Archelosauria ANCESTRAL SPECIES 36 ENSGT00530000064424 ENSGT00940000161135 ENSGT00960000188719 ENSGT01090000260003.a.b.a ENSGT00940000163157 ENSGT00940000161485 #7 ENSGT00420000029926 ENSGT00990000204711 ENSGT00950000185347 ENSGT00940000166365 #11 ENSGT00940000166966 #18 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00940000161908 #24 ENSGT00390000001927.b #25 ENSGT00940000154404.a #26 ENSGT00940000161121 #27 ENSGT00940000161346 #28 ENSGT00390000009532.A.d.b ENSGT00940000161866 ENSGT01030000234588.b.b.b.b.b ENSGT00390000002069 ENSGT00940000161816 ENSGT00390000007101.d.a ENSGT00390000009899.a.c ENSGT00940000153909.a ENSGT00940000161254 Cryptodira ANCESTRAL SPECIES 40 ENSGT00390000007725.B.c ENSGT00940000153556.B ENSGT00390000018612.a.a ENSGT00950000182841.b.b.a ENSGT00960000188719 ENSGT01090000260003.a.b.a ENSGT00940000163157 ENSGT00940000161485 #7 ENSGT00990000204711 ENSGT00950000185347 ENSGT00940000166365 #11 ENSGT00530000064424 ENSGT00940000166966 #18 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00940000161908 #24 ENSGT00390000001927.b #25 ENSGT00940000154404.a #26 ENSGT00940000161121 #27 ENSGT00940000161346 #28 ENSGT00390000009532.A.d.b ENSGT00940000161866 ENSGT01030000234588.b.b.b.b.b ENSGT00390000002069 ENSGT00940000161816 ENSGT00390000007101.d.a ENSGT00390000009899.a.c ENSGT00940000153909.a ENSGT00940000161254 Testudinoidea ANCESTRAL SPECIES 35 ENSGT00940000153556.B ENSGT00390000018612.a.a ENSGT00950000182841.b.b.a.d ENSGT00960000188719 ENSGT01090000260003.a.b.a ENSGT00940000163157 ENSGT00940000161485 #7 ENSGT01030000237284 #8 ENSGT00410000026259 #10 ENSGT00940000166365 #11 ENSGT00530000064424 ENSGT00940000166966 #18 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000007946.e #21 ENSGT00390000010799 #22 ENSGT00390000007946.f #23 ENSGT00940000161908 #24 ENSGT00390000001927.b #25 ENSGT00940000154404.a #26 ENSGT00940000161121 #27 ENSGT00940000161346 #28 ENSGT00390000009532.A.d.b ENSGT00940000161866 ENSGT00390000001450.g.h.a.a.a.b.a ##13 ENSGT00390000001450.g.h.a.a.a.a.b #13 ENSGT01030000234588.b.b.b.b.b ENSGT00390000002069 ENSGT00940000161816 ENSGT00390000007101.d.a ENSGT00390000009899.a.c Emydidae ANCESTRAL SPECIES 108 ENSGT00940000161485 #7 ENSGT01030000237284 #8 ENSGT00410000026259 #10 ENSGT00940000166365.c #11 ENSGT00940000166966 #18 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000007946.e #21 ENSGT00390000010799 #22 ENSGT00390000007946.f #23 ENSGT00940000161908 #24 ENSGT00390000001927.b #25 ENSGT00940000154404.a #26 ENSGT00940000161121 #27 ENSGT00940000161346 #28 painted turtle MODERN SPECIES 1143 ENSCPBG00000015101 #7 ENSCPBG00000015099 #8 ENSCPBG00000015094 #9 PTH2 (ENSCPBG00000015091) #10 ENSCPBG00000015005 #11 ENSCPBG00000014986 #12 ENSCPBG00000014984 #13 ENSCPBG00000014979 #14 ENSCPBG00000014977 #15 ENSCPBG00000014975 #16 ENSCPBG00000014973 #17 ENSCPBG00000014969 #18 PIH1D1 (ENSCPBG00000014963) #19 SLC17A7 (ENSCPBG00000014951) #20 ENSCPBG00000014931 #21 RPL13A (ENSCPBG00000014922) #22 ENSCPBG00000014921 #23 ENSCPBG00000014920 #24 NUCB1 (ENSCPBG00000014918) #25 ENSCPBG00000014916 #26 ENSCPBG00000014914 #27 HSD17B14 (ENSCPBG00000014912) #28 Three-toed box turtle MODERN SPECIES 298 GYS1 (ENSTMTG00000008657) ENSTMTG00000008678 ENSTMTG00000008691 #7 ENSTMTG00000010285 #8 ENSTMTG00000010303 #9 ENSTMTG00000010321 #18 ENSTMTG00000010354 #19 SLC17A7 (ENSTMTG00000010503) #20 DHDH (ENSTMTG00000010559) #21 RPL13A (ENSTMTG00000010594) #22 Testudinidae ANCESTRAL SPECIES 47 ENSGT00390000007725.B.c ENSGT00940000153556.B ENSGT00390000018612.a.a ENSGT00950000182841.b.b.a.d ENSGT01090000260003.a.b.a ENSGT00940000163157 ENSGT00940000161485 #7 ENSGT01030000237284 #8 ENSGT00410000026259 #10 ENSGT00940000166365 #11 ENSGT00530000064424 ENSGT00940000166966 #18 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000007946.e #21 ENSGT00390000010799 #22 ENSGT00390000007946.f #23 ENSGT00940000161908 #24 ENSGT00390000001927.b #25 ENSGT00940000154404.a #26 ENSGT00940000161346 #28 ENSGT00390000009532.A.d.b ENSGT00940000161866 ENSGT00390000001450.g.h.a.a.a.b.a ##13 ENSGT00390000001450.g.h.a.a.a.a.b #13 ENSGT01030000234588.b.b.b.b.b ENSGT00390000002069 ENSGT00940000161816 ENSGT00390000007101.d.a ENSGT00390000009899.a.c ENSGT00940000153909.a Abingdon island giant tortoise MODERN SPECIES 2359 ENSCABG00000000825 ENSCABG00000000822 CD37 (ENSCABG00000000815) #7 ENSCABG00000000812 #8 ENSCABG00000000807 #9 PTH2 (ENSCABG00000000803) #10 ENSCABG00000000801 #11 ENSCABG00000000797 ##13 ENSCABG00000000795 ENSCABG00000000794 #15 ENSCABG00000000791 ##13 ENSCABG00000000776 #18 PIH1D1 (ENSCABG00000000768) #19 SLC17A7 (ENSCABG00000000757) #20 ENSCABG00000000628 #21 RPL13A (ENSCABG00000000617) #22 ENSCABG00000000613 #23 ENSCABG00000000609 #24 NUCB1 (ENSCABG00000000601) #25 ENSCABG00000000596 #26 ENSCABG00000000590 #28 BCAT2 (ENSCABG00000000570) ENSCABG00000000552 ENSCABG00000000548 ##13 ENSCABG00000000539 #13 TNNI3 (ENSCABG00000000503) DNAAF3 (ENSCABG00000000408) SYT5 (ENSCABG00000000370) ENSCABG00000000329 PPP6R1 (ENSCABG00000000259) HSPBP1 (ENSCABG00000000201) Goode s thornscrub tortoise MODERN SPECIES 138 BAX (ENSGEVG00005012003) ENSGEVG00005011952 ENSGEVG00005011899 #7 ENSGEVG00005011852 #9 ENSGEVG00005011832 ENSGEVG00005011801 ENSGEVG00005011031 #11 ENSGEVG00005010851 ENSGEVG00005010804 ENSGEVG00005010788 #15 ENSGEVG00005010773 ##13 ENSGEVG00005010725 #18 PIH1D1 (ENSGEVG00005016578) #19 SLC17A7 (ENSGEVG00005016456) #20 DHDH (ENSGEVG00005016429) #21 RPL13A (ENSGEVG00005016372) #22 ENSGEVG00005016341 ENSGEVG00005016325 #26 HSD17B14 (ENSGEVG00005016294) #28 BCAT2 (ENSGEVG00005016261) ENSGEVG00005016210 ENSGEVG00005016187 ##13 ENSGEVG00005016140 ##13 ENSGEVG00005016088 ##13 TNNI3 (ENSGEVG00005016040) DNAAF3 (ENSGEVG00005015900) SYT5 (ENSGEVG00005015820) ENSGEVG00005015794 TMEM86B (ENSGEVG00005015752) PPP6R1 (ENSGEVG00005015635) HSPBP1 (ENSGEVG00005015610) Chinese turtle MODERN SPECIES 588 PIH1D1 (ENSPSIG00000018190) #19 SLC17A7 (ENSPSIG00000018197) #20 RPL13A (ENSPSIG00000018234) #22 ENSPSIG00000003116 HSD17B14 (ENSPSIG00000003129) #28 Archosauria ANCESTRAL SPECIES 64 ENSGT00530000064424 ENSGT00940000161135 ENSGT00940000161485 #7 ENSGT00420000029926 ENSGT00990000204711 ENSGT00950000185347 ENSGT00940000166365 #11 ENSGT00940000166966 #18 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00940000161908 #24 ENSGT00390000001927.b #25 ENSGT00940000154404.a #26 ENSGT00940000161121 #27 ENSGT00940000161346 #28 ENSGT00390000009532.A.d.b ENSGT00940000161866 ENSGT00390000001450.g #13 Aves ANCESTRAL SPECIES 79 ENSGT00950000182841.b.b.b ENSGT01090000260003.a.b.a ENSGT00940000161485 #7 ENSGT00420000029926 ENSGT00530000064424 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 Neognathae ANCESTRAL SPECIES 61 ENSGT00950000182841.b.b.b ENSGT01090000260003.a.b.a ENSGT00940000161485 #7 ENSGT00420000029926 ENSGT00530000064424 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 Neognathae_b ANCESTRAL SPECIES 48 ENSGT01030000234564.a.b ENSGT00510000048131 ENSGT00390000014743 ENSGT00550000075069 ENSGT00940000169414 ENSGT00940000161219 ENSGT01050000244961.b ENSGT01050000244893.c.b.a ENSGT00940000160074 ENSGT00940000161485 #7 ENSGT00420000029926 ENSGT00530000064424 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 Passeriformes ANCESTRAL SPECIES 50 ENSGT01030000234564.a.b ENSGT00510000048131 ENSGT00390000014743 ENSGT00550000075069 ENSGT00940000169414 ENSGT00940000161219 ENSGT01050000244961.b ENSGT01050000244893.c.b.a ENSGT00940000160074 ENSGT00940000161485 #7 ENSGT00420000029926 ENSGT00530000064424 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00390000009532.A.d.b ENSGT00940000160072 ENSGT00390000006753.A ENSGT00940000157149 ENSGT00940000159441 Passeriformes_d ANCESTRAL SPECIES 46 ENSGT00390000003912 ENSGT01030000234564.a.b ENSGT00510000048131 ENSGT00390000014743 ENSGT00550000075069 ENSGT00940000169414 ENSGT00940000161219 ENSGT01050000244961.b ENSGT01050000244893.c.b.a ENSGT00940000160074 ENSGT00940000161485 #7 ENSGT00940000163690 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00390000009532.A.d.b ENSGT00940000160072 ENSGT00390000006753.A ENSGT00940000157149 ENSGT00940000159441 Passeriformes_g ANCESTRAL SPECIES 57 ENSGT00390000003912 ENSGT01030000234564.a.b ENSGT00510000048131 ENSGT00390000014743 ENSGT00550000075069 ENSGT00940000169414 ENSGT00940000161219 ENSGT01050000244961.b ENSGT01050000244893.c.b.a ENSGT00940000160074 ENSGT00940000161485 #7 ENSGT00940000163690 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00390000009532.A.d.b ENSGT00940000160072 ENSGT00390000006753.A ENSGT00940000157149 ENSGT00940000159441 Passeroidea ANCESTRAL SPECIES 57 ENSGT01030000234564.a.b ENSGT00510000048131 ENSGT00390000014743 ENSGT00550000075069 ENSGT00940000169414 ENSGT01010000222360.G ENSGT00940000161219 ENSGT01050000244961.b ENSGT01050000244893.c.b.a ENSGT00940000160074 ENSGT00940000161485 #7 ENSGT00940000163690 ENSGT00940000161135 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 ENSGT00390000007946 #21 ENSGT00390000009532.A.d.b ENSGT00940000160072 ENSGT00390000006753.A ENSGT00940000157149 ENSGT00940000159441 Zebra finch MODERN SPECIES 24 ENSTGUG00000029326 ENSTGUG00000004375 ENSTGUG00000025239 ENSTGUG00000019338 ENSTGUG00000027725 RPS9 (ENSTGUG00000022536) ENSTGUG00000020986 ENSTGUG00000027101 ENSTGUG00000015659 BAX (ENSTGUG00000015645) ENSTGUG00000020449 #7 ENSTGUG00000019509 ENSTGUG00000019271 PIH1D1 (ENSTGUG00000019254) #19 SLC17A7 (ENSTGUG00000023432) #20 RPL13A (ENSTGUG00000017025) #22 DHDH (ENSTGUG00000022809) #21 ENSTGUG00000029399 RASIP1 (ENSTGUG00000028587) ENSTGUG00000024568 ISOC2 (ENSTGUG00000022600) ENSTGUG00000027428 UBE2S (ENSTGUG00000024004) ENSTGUG00000028256 ENSTGUG00000021677 ENSTGUG00000028612 U2AF2 (ENSTGUG00000019395) LENG8 (ENSTGUG00000018887) ENSTGUG00000020983 KMT5C (ENSTGUG00000021288) HSPBP1 (ENSTGUG00000025040) Great tit MODERN SPECIES 322 ENSPMJG00000013407 ENSPMJG00000013408 #7 BAX (ENSPMJG00000013409) ENSPMJG00000013410 ENSPMJG00000013411 ALDH16A1 (ENSPMJG00000013414) PIH1D1 (ENSPMJG00000013417) #19 SLC17A7 (ENSPMJG00000013418) #20 RPL13A (ENSPMJG00000013426) #22 DHDH (ENSPMJG00000013429) #21 BCAT2 (ENSPMJG00000013430) RASIP1 (ENSPMJG00000013432) Neognathae_c ANCESTRAL SPECIES 49 ENSGT00940000153556.B ENSGT00390000018612.a.a ENSGT00940000160179 ENSGT00940000163131 ENSGT00940000159109 ENSGT00950000182933.A.b ENSGT00940000161219 ENSGT01050000244961.b ENSGT01050000244893.c.b.a ENSGT00940000160074 ENSGT00940000161485 #7 ENSGT00510000048192 #19 ENSGT00940000159110 #20 ENSGT00390000010799 #22 Kakapo MODERN SPECIES 34 ENSSHBG00005008563 KCNC3 (ENSSHBG00005008598) GRIN2D (ENSSHBG00005008608) ENSSHBG00005008630 ENSSHBG00005008636 PRKCG (ENSSHBG00005001102) CACNG7 (ENSSHBG00005001104) CACNG8 (ENSSHBG00005005818) CYTH2 (ENSSHBG00005005837) ENSSHBG00005005863 ENSSHBG00005005921 ENSSHBG00005005938 #7 ENSSHBG00005005963 PIH1D1 (ENSSHBG00005006003) #19 SLC17A7 (ENSSHBG00005006170) #20 RPL13A (ENSSHBG00005006471) #22 ENSSHBG00005006493 ENSSHBG00005006502 Australian saltwater crocodile MODERN SPECIES 64 ENSCPRG00005016522 ENSCPRG00005016538 BAX (ENSCPRG00005016545) ENSCPRG00005016546 CD37 (ENSCPRG00005016549) #7 TEAD2 (ENSCPRG00005016567) DKKL1 (ENSCPRG00005016673) ENSCPRG00005016679 #9 ENSCPRG00005016681 ENSCPRG00005016684 ENSCPRG00005016691 #11 ENSCPRG00005016701 #18 ENSCPRG00005016714 #19 SLC17A7 (ENSCPRG00005016730) #20 ENSCPRG00005016751 RPL13A (ENSCPRG00005016760) #22 DHDH (ENSCPRG00005016764) #21 TULP2 (ENSCPRG00005016777) #24 NUCB1 (ENSCPRG00005016812) #25 ENSCPRG00005016815 #26 PLEKHA4 (ENSCPRG00005016820) #27 HSD17B14 (ENSCPRG00005016823) #28 BCAT2 (ENSCPRG00005016829) ENSCPRG00005016835 ENSCPRG00005016838 #13 AP2A2 (ENSCPRG00005016849) MUC6 (ENSCPRG00005016873) ENSCPRG00005016890 ENSCPRG00005016897 ENSCPRG00005016920 ENSCPRG00005016925