Tetrapoda	ANCESTRAL SPECIES	129	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000179440
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824
Theria	ANCESTRAL SPECIES	12	ENSGT00950000183142.a.b.a.b	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Eutheria	ANCESTRAL SPECIES		ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00660000097201	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084
Primates	ANCESTRAL SPECIES	7	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084
Haplorrhini	ANCESTRAL SPECIES	41	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37	ENSGT00940000160084
Simiiformes	ANCESTRAL SPECIES	31	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084
Catarrhini	ANCESTRAL SPECIES	27	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00910000146860.b.a.a #20	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084
Hominidae	ANCESTRAL SPECIES	6	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00910000146860.b.a.a #20	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #26	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00910000146860.b.a.a #20	ENSGT00940000155103.a.b.o #22	ENSGT00950000183059.b.a.b.m #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #26	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00910000146860.b.a.a #20	ENSGT00940000155103.a.b.o #22	ENSGT00950000183059.b.a.b.m #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #26	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084
Pan	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00390000005254.i.a.a.b.a #13	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00910000146860.b.a.a #20	ENSGT00940000155103.a.b.o #22	ENSGT00950000183059.b.a.b.m #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00950000183000.c.a.a.i.a.a.b.a.b #26	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000153386.B.b #36	ENSGT01030000235112 #37
Chimpanzee	MODERN SPECIES		SMYD3 (ENSPTRG00000002187) #7	ENSPTRG00000045241 #8	KIF26B (ENSPTRG00000002185) #9	EFCAB2 (ENSPTRG00000030083) #10	HNRNPU (ENSPTRG00000002182) #11	COX20 (ENSPTRG00000038758) #12	ENSPTRG00000049372 #13	DESI2 (ENSPTRG00000002180) #14	CATSPERE (ENSPTRG00000002179) #15	ADSS2 (ENSPTRG00000002178) #16	C1H1orf100 (ENSPTRG00000002177) #17	ZBTB18 (ENSPTRG00000002175) #18	AKT3 (ENSPTRG00000002174) #19	ENSPTRG00000049151 #20	SDCCAG8 (ENSPTRG00000002173) #21	CEP170 (ENSPTRG00000002172) #22	PLD5 (ENSPTRG00000002169) #23	ENSPTRG00000047329 #24	MAP1LC3C (ENSPTRG00000023346) #25	ENSPTRG00000050862 #26	BECN2 (ENSPTRG00000044975) #27	EXO1 (ENSPTRG00000002167) #28	WDR64 (ENSPTRG00000002166) #29	OPN3 (ENSPTRG00000002165) #30	KMO (ENSPTRG00000002164) #31	FH (ENSPTRG00000002163) #32	RGS7 (ENSPTRG00000002161) #33	GREM2 (ENSPTRG00000049478) #34	ENSPTRG00000045511 #35	ENSPTRG00000047391 #36	ENSPTRG00000002157 #37
Bonobo	MODERN SPECIES		TFB2M (ENSPPAG00000036577)	SMYD3 (ENSPPAG00000037519) #7	KIF26B (ENSPPAG00000036407) #9	ENSPPAG00000030892 #10	HNRNPU (ENSPPAG00000038652) #11	COX20 (ENSPPAG00000033034) #12	ENSPPAG00000027622 #13	DESI2 (ENSPPAG00000036240) #14	CATSPERE (ENSPPAG00000039497) #15	ADSS2 (ENSPPAG00000035584) #16	C1orf100 (ENSPPAG00000029380) #17	ZBTB18 (ENSPPAG00000035489) #18	AKT3 (ENSPPAG00000035578) #19	ENSPPAG00000041794 #20	SDCCAG8 (ENSPPAG00000041964) #21	CEP170 (ENSPPAG00000038692) #22	ENSPPAG00000031548 #23	ENSPPAG00000034254 ##24	MAP1LC3C (ENSPPAG00000026353) #25	ENSPPAG00000042191 #26	BECN2 (ENSPPAG00000016547) #27	EXO1 (ENSPPAG00000038555) #28	WDR64 (ENSPPAG00000015349) #29	OPN3 (ENSPPAG00000034935) #30	KMO (ENSPPAG00000030870) #31	FH (ENSPPAG00000029968) #32	RGS7 (ENSPPAG00000031922) #33	GREM2 (ENSPPAG00000011100) #34	ENSPPAG00000029823	ENSPPAG00000041841 #36	ENSPPAG00000036597 #37
Human	MODERN SPECIES		CNST (ENSG00000162852)	TFB2M (ENSG00000162851)	SMYD3 (ENSG00000185420) #7	KIF26B (ENSG00000162849) #9	EFCAB2 (ENSG00000203666) #10	HNRNPU (ENSG00000153187) #11	COX20 (ENSG00000203667) #12	ENSG00000284188	DESI2 (ENSG00000121644) #14	CATSPERE (ENSG00000179397) #15	ADSS2 (ENSG00000035687) #16	C1orf100 (ENSG00000173728) #17	ZBTB18 (ENSG00000179456) #18	AKT3 (ENSG00000117020) #19	SDCCAG8 (ENSG00000054282) #21	CEP170 (ENSG00000143702) #22	PLD5 (ENSG00000180287) #23	MAP1LC3C (ENSG00000197769) #25	BECN2 (ENSG00000196289) #27	EXO1 (ENSG00000174371) #28	WDR64 (ENSG00000162843) #29	CHML (ENSG00000203668)	OPN3 (ENSG00000054277) #30	KMO (ENSG00000117009) #31	FH (ENSG00000091483) #32	RGS7 (ENSG00000182901) #33	GREM2 (ENSG00000180875) #34	FMN2 (ENSG00000155816) #35	CHRM3 (ENSG00000133019)	ZP4 (ENSG00000116996)	RYR2 (ENSG00000198626)
Gorilla	MODERN SPECIES	17	NEUROG2 (ENSGGOG00000038276)	ZGRF1 (ENSGGOG00000022552)	ENSGGOG00000023567	ENSGGOG00000006438	ENSGGOG00000022391	ENSGGOG00000026585	ANK2 (ENSGGOG00000028608)	CAMK2D (ENSGGOG00000022729)	ARSJ (ENSGGOG00000012700)	UGT8 (ENSGGOG00000026542)	NDST4 (ENSGGOG00000000466)	TRAM1L1 (ENSGGOG00000000128)	ENSGGOG00000008099	NDST3 (ENSGGOG00000034831)	PRSS12 (ENSGGOG00000002810)	CEP170 (ENSGGOG00000016268) #22	METTL14 (ENSGGOG00000016449)	SEC24D (ENSGGOG00000002496)	SYNPO2 (ENSGGOG00000012942)	MYOZ2 (ENSGGOG00000010448)	USP53 (ENSGGOG00000006480)	C4orf3 (ENSGGOG00000006489)	FABP2 (ENSGGOG00000027841)	PDE5A (ENSGGOG00000013689)	MAD2L1 (ENSGGOG00000002516)	ENSGGOG00000016645	PRDM5 (ENSGGOG00000013562)	NDNF (ENSGGOG00000008613)	ENSGGOG00000012377	QRFPR (ENSGGOG00000008131)	ENSGGOG00000022210
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000155103.a.b.p ##22
Gorilla	MODERN SPECIES		SMYD3 (ENSGGOG00000034875) #7	ENSGGOG00000011667	KIF26B (ENSGGOG00000010397) #9	ENSGGOG00000040325 #10	HNRNPU (ENSGGOG00000004061) #11	COX20 (ENSGGOG00000028397) #12	ENSGGOG00000040495	DESI2 (ENSGGOG00000009797) #14	CATSPERE (ENSGGOG00000005744) #15	C1orf100 (ENSGGOG00000011106) #17	ADSS2 (ENSGGOG00000011109) #16	ZBTB18 (ENSGGOG00000028442) #18	AKT3 (ENSGGOG00000007722) #19	ENSGGOG00000022126	SDCCAG8 (ENSGGOG00000007709) #21	ENSGGOG00000043649 ##22	ENSGGOG00000028488	ENSGGOG00000007912	PLD5 (ENSGGOG00000011168) #23	MAP1LC3C (ENSGGOG00000000253) #25	ENSGGOG00000043532 #26	BECN2 (ENSGGOG00000008172) #27	EXO1 (ENSGGOG00000013563) #28	WDR64 (ENSGGOG00000015532) #29	CHML (ENSGGOG00000016322)	ENSGGOG00000042072 #30	KMO (ENSGGOG00000013897) #31	FH (ENSGGOG00000009996) #32	ENSGGOG00000040302	RGS7 (ENSGGOG00000010969) #33	GREM2 (ENSGGOG00000038654) #34
Orangutan	MODERN SPECIES		CNST (ENSPPYG00000000045)	TFB2M (ENSPPYG00000000046)	SMYD3 (ENSPPYG00000000047) #7	KIF26B (ENSPPYG00000000048) #9	EFCAB2 (ENSPPYG00000033790) #10	HNRNPU (ENSPPYG00000000052) #11	COX20 (ENSPPYG00000037954) #12	ENSPPYG00000041762 #13	DESI2 (ENSPPYG00000000055) #14	CATSPERE (ENSPPYG00000000056) #15	ADSS2 (ENSPPYG00000000057) #16	C1orf100 (ENSPPYG00000000058) #17	ZBTB18 (ENSPPYG00000000059) #18	AKT3 (ENSPPYG00000000060) #19	SDCCAG8 (ENSPPYG00000000061) #21	CEP170 (ENSPPYG00000000063) #22	PLD5 (ENSPPYG00000000064) #23	MAP1LC3C (ENSPPYG00000010665) #25	ENSPPYG00000037133 #26	BECN2 (ENSPPYG00000000066) #27	EXO1 (ENSPPYG00000000067) #28	WDR64 (ENSPPYG00000000068) #29	OPN3 (ENSPPYG00000000069) #30	KMO (ENSPPYG00000000070) #31	FH (ENSPPYG00000000071) #32	RGS7 (ENSPPYG00000000072) #33	GREM2 (ENSPPYG00000000073) #34	ENSPPYG00000032558 #35	CHRM3 (ENSPPYG00000000076)	ENSPPYG00000040859	ENSPPYG00000031844
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	20	SMYD3 (ENSNLEG00000004133) #7	ENSNLEG00000004117 #9	ENSNLEG00000004108 #10	ENSNLEG00000004046	COX20 (ENSNLEG00000004027) #12	ENSNLEG00000032561	ENSNLEG00000028968	DESI2 (ENSNLEG00000004019) #14	CATSPERE (ENSNLEG00000004005) #15	ADSS2 (ENSNLEG00000028310) #16	C1orf100 (ENSNLEG00000003983) #17	ZBTB18 (ENSNLEG00000003981) #18	AKT3 (ENSNLEG00000003927) #19	SDCCAG8 (ENSNLEG00000003873) #21	ENSNLEG00000034308 #20	ENSNLEG00000003866 #22	PLD5 (ENSNLEG00000003830) #23	MAP1LC3C (ENSNLEG00000003820) #25	ENSNLEG00000035007 #26	EXO1 (ENSNLEG00000003806) #28	WDR64 (ENSNLEG00000003772) #29	OPN3 (ENSNLEG00000003760) #30	ENSNLEG00000033151	KMO (ENSNLEG00000003718) #31	FH (ENSNLEG00000003677) #32	RGS7 (ENSNLEG00000003630) #33	ENSNLEG00000031828	GREM2 (ENSNLEG00000027574) #34	FMN2 (ENSNLEG00000003621) #35	ENSNLEG00000030766	ENSNLEG00000027607
Gibbon	MODERN SPECIES	128																ENSNLEG00000001251 #22	ENSNLEG00000033528
Cercopithecidae	ANCESTRAL SPECIES	33	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b.o	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b.o	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00910000147430	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00910000148055	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT01100000264485	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00910000147430	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00910000148055	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT01100000264485	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000155196.r	ENSGT00940000153386.B.b #36	ENSGT00940000160084
Olive baboon	MODERN SPECIES		KIF26B (ENSPANG00000009793) #9	ENSPANG00000049532	EFCAB2 (ENSPANG00000026471) #10	HNRNPU (ENSPANG00000011643) #11	COX20 (ENSPANG00000002384) #12	ENSPANG00000032745	DESI2 (ENSPANG00000012978) #14	CATSPERE (ENSPANG00000029860) #15	ADSS2 (ENSPANG00000006358) #16	ENSPANG00000004992 #17	ZBTB18 (ENSPANG00000021934) #18	ENSPANG00000044679	ENSPANG00000037188	AKT3 (ENSPANG00000010019) #19	SDCCAG8 (ENSPANG00000010168) #21	CEP170 (ENSPANG00000022781) #22	PLD5 (ENSPANG00000005955) #23	ENSPANG00000042045	MAP1LC3C (ENSPANG00000044045) #25	ENSPANG00000045430	ENSPANG00000049690	ENSPANG00000041812	ENSPANG00000037647	EXO1 (ENSPANG00000005526) #28	ENSPANG00000049821	WDR64 (ENSPANG00000021032) #29	OPN3 (ENSPANG00000019889) #30	KMO (ENSPANG00000025414) #31	FH (ENSPANG00000025415) #32	ENSPANG00000034101	RGS7 (ENSPANG00000009367) #33
Cercopithecinae_d	ANCESTRAL SPECIES	68	ENSGT00950000183142.a.b.a.b.o	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00910000147430	ENSGT00390000016158.v #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00910000148055	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000155196.r	ENSGT00940000153386.B.b #36	ENSGT00390000010721.a.a.a.b	ENSGT00940000161324	ENSGT00940000154906.C.d
Sooty mangabey	MODERN SPECIES	449	SMYD3 (ENSCATG00000041127) #7	KIF26B (ENSCATG00000040207) #9	ENSCATG00000033734 #10	HNRNPU (ENSCATG00000035273) #11	ENSCATG00000007496	COX20 (ENSCATG00000037050) #12	DESI2 (ENSCATG00000039396) #14	CATSPERE (ENSCATG00000040129) #15	ADSS2 (ENSCATG00000031646) #16	C1orf100 (ENSCATG00000043782) #17	ENSCATG00000003512	ZBTB18 (ENSCATG00000040414) #18	AKT3 (ENSCATG00000033494) #19	ENSCATG00000012672 #20	SDCCAG8 (ENSCATG00000039425) #21	CEP170 (ENSCATG00000031357) #22	PLD5 (ENSCATG00000021605) #23	MAP1LC3C (ENSCATG00000031341) #25	EXO1 (ENSCATG00000006511) #28	WDR64 (ENSCATG00000013569) #29	OPN3 (ENSCATG00000042188) #30	KMO (ENSCATG00000037464) #31	FH (ENSCATG00000044877) #32	ENSCATG00000044040	RGS7 (ENSCATG00000035083) #33	GREM2 (ENSCATG00000021508) #34	ENSCATG00000042350	ENSCATG00000017726 #36	FMN2 (ENSCATG00000045060) #35	ENSCATG00000034279	ENSCATG00000021919
Drill	MODERN SPECIES	807		KIF26B (ENSMLEG00000033132) #9	EFCAB2 (ENSMLEG00000032092) #10	HNRNPU (ENSMLEG00000040141) #11	ENSMLEG00000015197	COX20 (ENSMLEG00000034231) #12	DESI2 (ENSMLEG00000039449) #14	CATSPERE (ENSMLEG00000035016) #15	ADSS2 (ENSMLEG00000036094) #16	C1orf100 (ENSMLEG00000027336) #17	ENSMLEG00000005578	ZBTB18 (ENSMLEG00000023925) #18	AKT3 (ENSMLEG00000042542) #19	ENSMLEG00000041086	SDCCAG8 (ENSMLEG00000008647) #21	CEP170 (ENSMLEG00000029097) #22
Macaca	ANCESTRAL SPECIES		ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00910000147430	ENSGT00390000016158.v #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b.d #18	ENSGT00910000148055	ENSGT00940000155092.b.c #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852.o #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT01100000264485	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B
Pig-tailed macaque	MODERN SPECIES	530	SMYD3 (ENSMNEG00000034852) #7	KIF26B (ENSMNEG00000043221) #9	ENSMNEG00000033617 #10	ENSMNEG00000027013	HNRNPU (ENSMNEG00000043645) #11	ENSMNEG00000039700	COX20 (ENSMNEG00000016736) #12	DESI2 (ENSMNEG00000033512) #14	CATSPERE (ENSMNEG00000026147) #15	ADSS2 (ENSMNEG00000035852) #16	C1orf100 (ENSMNEG00000031871) #17	ENSMNEG00000016127	ZBTB18 (ENSMNEG00000024588) #18	AKT3 (ENSMNEG00000042335) #19	SDCCAG8 (ENSMNEG00000029839) #21	CEP170 (ENSMNEG00000016347) #22	PLD5 (ENSMNEG00000041098) #23	EXO1 (ENSMNEG00000032416) #28	WDR64 (ENSMNEG00000043406) #29	ENSMNEG00000027552	OPN3 (ENSMNEG00000039263) #30	KMO (ENSMNEG00000043449) #31	FH (ENSMNEG00000031503) #32	ENSMNEG00000043907	RGS7 (ENSMNEG00000036900) #33	GREM2 (ENSMNEG00000004273) #34	ENSMNEG00000028783	ENSMNEG00000020233 #36	FMN2 (ENSMNEG00000028795) #35	ENSMNEG00000028499	ENSMNEG00000039834
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b.o	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b.d #18	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.a.b.a.b.b.b.a.a.a.a.b.a.a	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT01100000263539.a.a.b.a.a.a.a.b.b	ENSGT00950000183059.b.a.b #23	ENSGT00940000161436.b ##24	ENSGT00940000161852.o #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.b.b.a.a.b.a.a.a.b.b.a.a.b.b.a.a.b.a.b.a.b.b.b.a.b	ENSGT01100000264485	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35
Rhesus	MODERN SPECIES		EFCAB2 (ENSMMUG00000011424) #10	ENSMMUG00000053368	HNRNPU (ENSMMUG00000021098) #11	COX20 (ENSMMUG00000031175) #12	ENSMMUG00000062648	DESI2 (ENSMMUG00000022310) #14	CATSPERE (ENSMMUG00000000021) #15	ENSMMUG00000062093	ADSS2 (ENSMMUG00000000016) #16	C1H1orf100 (ENSMMUG00000000015) #17	ZBTB18 (ENSMMUG00000015664) #18	ENSMMUG00000063991	ENSMMUG00000049847	AKT3 (ENSMMUG00000019995) #19	SDCCAG8 (ENSMMUG00000019994) #21	CEP170 (ENSMMUG00000019914) #22	ENSMMUG00000059561	ENSMMUG00000062759	PLD5 (ENSMMUG00000004265) #23	ENSMMUG00000053723 #25	BECN2 (ENSMMUG00000060345) #27	EXO1 (ENSMMUG00000008761) #28	WDR64 (ENSMMUG00000008763) #29	OPN3 (ENSMMUG00000005669) #30	KMO (ENSMMUG00000005668) #31	FH (ENSMMUG00000005667) #32	ENSMMUG00000054974	RGS7 (ENSMMUG00000010729) #33	GREM2 (ENSMMUG00000064824) #34	FMN2 (ENSMMUG00000059650) #35	CHRM3 (ENSMMUG00000021442)
Crab-eating macaque	MODERN SPECIES		SMYD3 (ENSMFAG00000045761) #7	EFCAB2 (ENSMFAG00000039610) #10	HNRNPU (ENSMFAG00000037308) #11	COX20 (ENSMFAG00000039162) #12	DESI2 (ENSMFAG00000032549) #14	ENSMFAG00000057921	CATSPERE (ENSMFAG00000033487) #15	ADSS2 (ENSMFAG00000032956) #16	C1orf100 (ENSMFAG00000037345) #17	ZBTB18 (ENSMFAG00000065061) #18	ENSMFAG00000063696	ENSMFAG00000047436	ENSMFAG00000063443	AKT3 (ENSMFAG00000033261) #19	SDCCAG8 (ENSMFAG00000045247) #21	CEP170 (ENSMFAG00000002285) #22	ENSMFAG00000064196	PLD5 (ENSMFAG00000038798) #23	ENSMFAG00000055286 ##24	ENSMFAG00000039495 #25	BECN2 (ENSMFAG00000060731) #27	EXO1 (ENSMFAG00000023098) #28	WDR64 (ENSMFAG00000032673) #29	OPN3 (ENSMFAG00000042077) #30	KMO (ENSMFAG00000044420) #31	FH (ENSMFAG00000045537) #32	ENSMFAG00000049382	RGS7 (ENSMFAG00000031055) #33	ENSMFAG00000060349	GREM2 (ENSMFAG00000052821) #34	ENSMFAG00000000367
Vervet Monkey	MODERN SPECIES	17	AHCTF1 (ENSCSAG00000009102)	SCCPDH (ENSCSAG00000009117)	CNST (ENSCSAG00000009127)	TFB2M (ENSCSAG00000009135)	KIF26B (ENSCSAG00000009182) #9	EFCAB2 (ENSCSAG00000009206) #10	HNRNPU (ENSCSAG00000009219) #11	COX20 (ENSCSAG00000009227) #12	DESI2 (ENSCSAG00000009236) #14	CATSPERE (ENSCSAG00000009285) #15	ADSS2 (ENSCSAG00000009306) #16	C1orf100 (ENSCSAG00000009313) #17	ZBTB18 (ENSCSAG00000009318) #18	AKT3 (ENSCSAG00000009327) #19	SDCCAG8 (ENSCSAG00000009336) #21	CEP170 (ENSCSAG00000009345) #22	PLD5 (ENSCSAG00000009359) #23	MAP1LC3C (ENSCSAG00000009372) #25	BECN2 (ENSCSAG00000019373) #27	ENSCSAG00000009385 #25	EXO1 (ENSCSAG00000009399) #28	WDR64 (ENSCSAG00000009423) #29	OPN3 (ENSCSAG00000009434) #30	KMO (ENSCSAG00000009486) #31	FH (ENSCSAG00000009513) #32	RGS7 (ENSCSAG00000009524) #33	GREM2 (ENSCSAG00000019372) #34	FMN2 (ENSCSAG00000009553) #35	CHRM3 (ENSCSAG00000019371)	ENSCSAG00000019370	ZP4 (ENSCSAG00000009624)
Rhinopithecus	ANCESTRAL SPECIES	63			ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.v #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A.v #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000155196.r	ENSGT00940000153386.B.b #36	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324
Golden snub-nosed monkey	MODERN SPECIES	2836						EFCAB2 (ENSRROG00000022255) #10	HNRNPU (ENSRROG00000041642) #11	COX20 (ENSRROG00000032327) #12	DESI2 (ENSRROG00000036662) #14	CATSPERE (ENSRROG00000028619) #15	ADSS2 (ENSRROG00000035892) #16	C1orf100 (ENSRROG00000043026) #17	ZBTB18 (ENSRROG00000040861) #18	AKT3 (ENSRROG00000034576) #19	SDCCAG8 (ENSRROG00000031685) #21	CEP170 (ENSRROG00000038486) #22
Black snub-nosed monkey	MODERN SPECIES	1359														AKT3 (ENSRBIG00000040845) #19	SDCCAG8 (ENSRBIG00000031769) #21	CEP170 (ENSRBIG00000037096) #22	PLD5 (ENSRBIG00000032911) #23	MAP1LC3C (ENSRBIG00000027745) #25	EXO1 (ENSRBIG00000036604) #28	WDR64 (ENSRBIG00000007151) #29	OPN3 (ENSRBIG00000034420) #30	KMO (ENSRBIG00000041269) #31	ENSRBIG00000032971 #32	ENSRBIG00000038076	RGS7 (ENSRBIG00000041312) #33	ENSRBIG00000042889	AFF3 (ENSRBIG00000029993)	LONRF2 (ENSRBIG00000037046)	CHST10 (ENSRBIG00000039203)	ENSRBIG00000041087	NMS (ENSRBIG00000037420)
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.l.a #11	ENSGT00390000016158.w.a #12	ENSGT00910000147125	ENSGT00390000016158.w.b #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b.fb.a #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00910000147185	ENSGT00390000000747 #31	ENSGT00950000183122.A.x.a #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Cebidae	ANCESTRAL SPECIES	23	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.l.a #11	ENSGT00390000016158.w.a #12	ENSGT00910000147125	ENSGT00390000016158.w.b #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b.fb.a #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A.x.a #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.l.a #11	ENSGT00390000016158.w.a #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b.fb.a #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A.x.a #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a
Capuchin	MODERN SPECIES	75	KIF26B (ENSCCAG00000031008) #9	ENSCCAG00000032757 #10	ENSCCAG00000037859 #11	ENSCCAG00000035009 #12	ENSCCAG00000029940	DESI2 (ENSCCAG00000032727) #14	CATSPERE (ENSCCAG00000024353) #15	ADSS (ENSCCAG00000019985) #16	C1orf100 (ENSCCAG00000026529) #17	ENSCCAG00000034313	ENSCCAG00000012153	ZBTB18 (ENSCCAG00000027386) #18	AKT3 (ENSCCAG00000022873) #19	SDCCAG8 (ENSCCAG00000024200) #21	ENSCCAG00000035019	CEP170 (ENSCCAG00000030281) #22	PLD5 (ENSCCAG00000033339) #23	MAP1LC3C (ENSCCAG00000015684) #25	EXO1 (ENSCCAG00000021808) #28	WDR64 (ENSCCAG00000027334) #29	OPN3 (ENSCCAG00000030966) #30	KMO (ENSCCAG00000036275) #31	FH (ENSCCAG00000031699) #32	RGS7 (ENSCCAG00000025701) #33	ENSCCAG00000032322	MED11 (ENSCCAG00000021433)	GREM2 (ENSCCAG00000020252) #34	FMN2 (ENSCCAG00000032440) #35	CHRM3 (ENSCCAG00000020014)	ENSCCAG00000022440
Bolivian squirrel monkey	MODERN SPECIES	114	TFB2M (ENSSBOG00000033950)	ENSSBOG00000035160	SMYD3 (ENSSBOG00000026164) #7	KIF26B (ENSSBOG00000034697) #9	EFCAB2 (ENSSBOG00000034755) #10	HNRNPU (ENSSBOG00000026500) #11	COX20 (ENSSBOG00000029804) #12	DESI2 (ENSSBOG00000021690) #14	CATSPERE (ENSSBOG00000034772) #15	ENSSBOG00000019992	ENSSBOG00000021320 #16	C1orf100 (ENSSBOG00000025161) #17	ZBTB18 (ENSSBOG00000023273) #18	AKT3 (ENSSBOG00000029542) #19	SDCCAG8 (ENSSBOG00000017248) #21	CEP170 (ENSSBOG00000026709) #22	PLD5 (ENSSBOG00000031034) #23	MAP1LC3C (ENSSBOG00000032837) #25	EXO1 (ENSSBOG00000023658) #28	WDR64 (ENSSBOG00000024836) #29	ENSSBOG00000031868 #30	KMO (ENSSBOG00000028370) #31	ENSSBOG00000031759 #32	RGS7 (ENSSBOG00000005787) #33	ENSSBOG00000028764	GREM2 (ENSSBOG00000018825) #34	ENSSBOG00000030391 #35	ENSSBOG00000028772	ZP4 (ENSSBOG00000028231)	RYR2 (ENSSBOG00000024698)	ENSSBOG00000017446
Marmoset	MODERN SPECIES	10	ENSCJAG00000085469	ENSCJAG00000086913	ENSCJAG00000076624	HNRNPU (ENSCJAG00000016914) #11	ENSCJAG00000048443 #12	DESI2 (ENSCJAG00000017043) #14	CATSPERE (ENSCJAG00000017054) #15	ADSS2 (ENSCJAG00000017069) #16	C1orf100 (ENSCJAG00000017074) #17	ENSCJAG00000085383	ZBTB18 (ENSCJAG00000040735) #18	ENSCJAG00000076464	AKT3 (ENSCJAG00000017090) #19	ENSCJAG00000086445	SDCCAG8 (ENSCJAG00000017112) #21	CEP170 (ENSCJAG00000017155) #22	ENSCJAG00000077919	PLD5 (ENSCJAG00000017218) #23	MAP1LC3C (ENSCJAG00000080978) #25	BECN2 (ENSCJAG00000021914) #27	EXO1 (ENSCJAG00000017241) #28	WDR64 (ENSCJAG00000017281) #29	ENSCJAG00000079675	OPN3 (ENSCJAG00000017298) #30	KMO (ENSCJAG00000017333) #31	ENSCJAG00000080318	FH (ENSCJAG00000017359) #32	RGS7 (ENSCJAG00000017379) #33	ENSCJAG00000074870	GREM2 (ENSCJAG00000040319) #34	FMN2 (ENSCJAG00000077453) #35
Mas night monkey	MODERN SPECIES	1115	ENSANAG00000037652	SMYD3 (ENSANAG00000032109) #7	KIF26B (ENSANAG00000030464) #9	EFCAB2 (ENSANAG00000033282) #10	ENSANAG00000033895 #11	ENSANAG00000029422 #12	ENSANAG00000028263	DESI2 (ENSANAG00000036524) #14	CATSPERE (ENSANAG00000038006) #15	ENSANAG00000033603 #16	C1orf100 (ENSANAG00000029438) #17	ZBTB18 (ENSANAG00000037877) #18	AKT3 (ENSANAG00000031454) #19	ENSANAG00000022761	SDCCAG8 (ENSANAG00000022837) #21	CEP170 (ENSANAG00000023200) #22	PLD5 (ENSANAG00000022321) #23	MAP1LC3C (ENSANAG00000021613) #25	EXO1 (ENSANAG00000020445) #28	WDR64 (ENSANAG00000022900) #29	ENSANAG00000028678	OPN3 (ENSANAG00000037150) #30	KMO (ENSANAG00000032312) #31	ENSANAG00000034794 #32	RGS7 (ENSANAG00000035979) #33	ENSANAG00000024783	GREM2 (ENSANAG00000019563) #34	ENSANAG00000027532	ZP4 (ENSANAG00000034287)
Tarsier	MODERN SPECIES	6340															SDCCAG8 (ENSTSYG00000011015) #21	CEP170 (ENSTSYG00000028366) #22	DNAJB12 (ENSTSYG00000014740)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b.d #34	ENSGT00940000154209.a.b.c #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b.c #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824
Mouse lemur	MODERN SPECIES	8	CNST (ENSMICG00000036496)	TFB2M (ENSMICG00000016790)	SMYD3 (ENSMICG00000005665) #7	KIF26B (ENSMICG00000005649) #9	EFCAB2 (ENSMICG00000041551) #10	HNRNPU (ENSMICG00000004616) #11	COX20 (ENSMICG00000043634) #12	DESI2 (ENSMICG00000034096) #14	ENSMICG00000030505	CATSPERE (ENSMICG00000007626) #15	ADSS2 (ENSMICG00000035421) #16	C1orf100 (ENSMICG00000042924) #17	ZBTB18 (ENSMICG00000007600) #18	AKT3 (ENSMICG00000015514) #19	SDCCAG8 (ENSMICG00000015485) #21	CEP170 (ENSMICG00000011831) #22	PLD5 (ENSMICG00000003488) #23	MAP1LC3C (ENSMICG00000041705) #25	EXO1 (ENSMICG00000042831) #28	WDR64 (ENSMICG00000003466) #29	OPN3 (ENSMICG00000003465) #30	KMO (ENSMICG00000003459) #31	ENSMICG00000003451 #32	RGS7 (ENSMICG00000003443) #33	GALNT2 (ENSMICG00000004134)	PGBD5 (ENSMICG00000004140)	COG2 (ENSMICG00000004171)	AGT (ENSMICG00000028058)	CAPN9 (ENSMICG00000004194)	C1orf198 (ENSMICG00000037972)	TTC13 (ENSMICG00000004208)
Lemuriformes_a	ANCESTRAL SPECIES	113	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b.c #34	ENSGT00940000161899 #35
Coquerels sifaka	MODERN SPECIES	304	TFB2M (ENSPCOG00000017595)	ENSPCOG00000018802	SMYD3 (ENSPCOG00000019858) #7	KIF26B (ENSPCOG00000022607) #9	EFCAB2 (ENSPCOG00000019391) #10	ENSPCOG00000018655 #11	ENSPCOG00000020107 #12	ENSPCOG00000023802	DESI2 (ENSPCOG00000026547) #14	CATSPERE (ENSPCOG00000011368) #15	ADSS2 (ENSPCOG00000024381) #16	C1orf100 (ENSPCOG00000005357) #17	ZBTB18 (ENSPCOG00000027655) #18	AKT3 (ENSPCOG00000026902) #19	SDCCAG8 (ENSPCOG00000023982) #21	CEP170 (ENSPCOG00000024128) #22	PLD5 (ENSPCOG00000013665) #23	MAP1LC3C (ENSPCOG00000017365) #25	EXO1 (ENSPCOG00000003699) #28	WDR64 (ENSPCOG00000013811) #29	OPN3 (ENSPCOG00000025862) #30	KMO (ENSPCOG00000017846) #31	ENSPCOG00000021373 #32	RGS7 (ENSPCOG00000023989) #33	GREM2 (ENSPCOG00000008595) #34	FMN2 (ENSPCOG00000018209) #35
Greater bamboo lemur	MODERN SPECIES	75	CNST (ENSPSMG00000021909)	TFB2M (ENSPSMG00000021950)	SMYD3 (ENSPSMG00000021959) #7	KIF26B (ENSPSMG00000021984) #9	EFCAB2 (ENSPSMG00000021989) #10	HNRNPU (ENSPSMG00000022205) #11	COX20 (ENSPSMG00000022388) #12	ENSPSMG00000022414 #14	CATSPERE (ENSPSMG00000022446) #15	ADSS2 (ENSPSMG00000022472) #16	C1orf100 (ENSPSMG00000022478) #17	ENSPSMG00000022482	ZBTB18 (ENSPSMG00000022492) #18	AKT3 (ENSPSMG00000022616) #19	SDCCAG8 (ENSPSMG00000022738) #21	CEP170 (ENSPSMG00000022916) #22	PLD5 (ENSPSMG00000023045) #23	MAP1LC3C (ENSPSMG00000023056) #25	BECN2 (ENSPSMG00000023064) #27	EXO1 (ENSPSMG00000023090) #28	WDR64 (ENSPSMG00000023125) #29	OPN3 (ENSPSMG00000023132) #30	KMO (ENSPSMG00000023160) #31	FH (ENSPSMG00000023173) #32	RGS7 (ENSPSMG00000023203) #33	ENSPSMG00000023210	GREM2 (ENSPSMG00000023211) #34	ENSPSMG00000023214 #35	ENSPSMG00000023215	EXOC8 (ENSPSMG00000023216)	SPRTN (ENSPSMG00000023220)
Bushbaby	MODERN SPECIES	256	CDC42BPA (ENSOGAG00000016679)	AHCTF1 (ENSOGAG00000003786)	SCCPDH (ENSOGAG00000007830)	CNST (ENSOGAG00000007827)	TFB2M (ENSOGAG00000007823)	ENSOGAG00000030964 #7	ENSOGAG00000010891 #7	KIF26B (ENSOGAG00000027006) #9	HNRNPU (ENSOGAG00000014024) #11	CATSPERE (ENSOGAG00000006168) #15	ADSS2 (ENSOGAG00000006165) #16	C1orf100 (ENSOGAG00000006163) #17	ZBTB18 (ENSOGAG00000013580) #18	AKT3 (ENSOGAG00000016417) #19	SDCCAG8 (ENSOGAG00000016400) #21	CEP170 (ENSOGAG00000024170) #22	PLD5 (ENSOGAG00000032441) #23	MAP1LC3C (ENSOGAG00000005130) #25	ENSOGAG00000025244 #27
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Glires	ANCESTRAL SPECIES		ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Rodentia	ANCESTRAL SPECIES		ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00660000097201	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37
Rodentia_B	ANCESTRAL SPECIES	45	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00660000097201	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00660000097201	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT01060000248581.B	ENSGT00940000161831
Muroidea	ANCESTRAL SPECIES	9	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT01060000248581.B	ENSGT00940000161831	ENSGT00940000162983
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT01060000248581.B	ENSGT00940000161831	ENSGT00940000162983
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT01060000248581.B	ENSGT00940000161831	ENSGT00940000162983
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT01060000248581.B	ENSGT00940000161831	ENSGT00940000162983
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	697	Sccpdh (ENSMAUG00000014050)	Cnst (ENSMAUG00000014643)	Tfb2m (ENSMAUG00000015170)	ENSMAUG00000014687	ENSMAUG00000015084 #7	Kif26b (ENSMAUG00000000950) #9	Efcab2 (ENSMAUG00000002894) #10	Hnrnpu (ENSMAUG00000008842) #11	Cox20 (ENSMAUG00000009696) #12	Desi2 (ENSMAUG00000015341) #14	Adss (ENSMAUG00000017188) #16	1700016C15Rik (ENSMAUG00000020005) #17	Zbtb18 (ENSMAUG00000020134) #18	Akt3 (ENSMAUG00000016204) #19	Sdccag8 (ENSMAUG00000000358) #21	ENSMAUG00000001243 #22	ENSMAUG00000001856 #22	Pld5 (ENSMAUG00000006656) #23	ENSMAUG00000017315 #28	Wdr64 (ENSMAUG00000000597) #29	Opn3 (ENSMAUG00000010182) #30	Chml (ENSMAUG00000011591)	Kmo (ENSMAUG00000000461) #31	Fh1 (ENSMAUG00000003139) #32	Rgs7 (ENSMAUG00000010632) #33	Grem2 (ENSMAUG00000018477) #34	ENSMAUG00000010198	Spta1 (ENSMAUG00000000194)	Or6k2 (ENSMAUG00000018299)	Or6k8-ps1 (ENSMAUG00000018076)	Or6k6 (ENSMAUG00000018183)
Golden Hamster	MODERN SPECIES	697	Cnst (ENSMAUG00000014643)	Tfb2m (ENSMAUG00000015170)	ENSMAUG00000014687	ENSMAUG00000015084 #7	Kif26b (ENSMAUG00000000950) #9	Efcab2 (ENSMAUG00000002894) #10	Hnrnpu (ENSMAUG00000008842) #11	Cox20 (ENSMAUG00000009696) #12	Desi2 (ENSMAUG00000015341) #14	Adss (ENSMAUG00000017188) #16	1700016C15Rik (ENSMAUG00000020005) #17	Zbtb18 (ENSMAUG00000020134) #18	Akt3 (ENSMAUG00000016204) #19	Sdccag8 (ENSMAUG00000000358) #21	ENSMAUG00000001243 #22	ENSMAUG00000001856 #22	Pld5 (ENSMAUG00000006656) #23	ENSMAUG00000017315 #28	Wdr64 (ENSMAUG00000000597) #29	Opn3 (ENSMAUG00000010182) #30	Chml (ENSMAUG00000011591)	Kmo (ENSMAUG00000000461) #31	Fh1 (ENSMAUG00000003139) #32	Rgs7 (ENSMAUG00000010632) #33	Grem2 (ENSMAUG00000018477) #34	ENSMAUG00000010198	Spta1 (ENSMAUG00000000194)	Or6k2 (ENSMAUG00000018299)	Or6k8-ps1 (ENSMAUG00000018076)	Or6k6 (ENSMAUG00000018183)	Or6n2 (ENSMAUG00000018276)
Chinese hamster chok1gshd	MODERN SPECIES	2	Smyd3 (ENSCGRG00001018690) #7	ENSCGRG00001024111	Kif26b (ENSCGRG00001021166) #9	Efcab2 (ENSCGRG00001014735) #10	Hnrnpu (ENSCGRG00001020525) #11	Cox20 (ENSCGRG00001024606) #12	Desi2 (ENSCGRG00001024954) #14	ENSCGRG00001002328	ENSCGRG00001025052	ADSS (ENSCGRG00001007265) #16	1700016C15Rik (ENSCGRG00001021462) #17	Zbtb18 (ENSCGRG00001000848) #18	Akt3 (ENSCGRG00001014427) #19	ENSCGRG00001022350	Sdccag8 (ENSCGRG00001012298) #21	Cep170 (ENSCGRG00001008216) #22	Pld5 (ENSCGRG00001018809) #23	Becn2 (ENSCGRG00001004210) #27	Exo1 (ENSCGRG00001014562) #28	Wdr64 (ENSCGRG00001024578) #29	Opn3 (ENSCGRG00001006852) #30	KMO (ENSCGRG00001021105) #31	Fh1 (ENSCGRG00001016572) #32	Rgs7 (ENSCGRG00001018878) #33	Grem2 (ENSCGRG00001002244) #34	ENSCGRG00001006655	ENSCGRG00001003844	Or6y1 (ENSCGRG00001004751)	ENSCGRG00001013002	ENSCGRG00001012371	Or10z1 (ENSCGRG00001012508)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT01060000248581.B	ENSGT00940000161831	ENSGT00940000162983	ENSGT00940000161240
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	14	Cnst (ENSMOCG00000006613)	Tfb2m (ENSMOCG00000016864)	Smyd3 (ENSMOCG00000019317) #7	Kif26b (ENSMOCG00000018386) #9	Efcab2 (ENSMOCG00000016106) #10	Hnrnpu (ENSMOCG00000015623) #11	Cox20 (ENSMOCG00000020586) #12	Desi2 (ENSMOCG00000017452) #14	ENSMOCG00000017731	Adss (ENSMOCG00000021076) #16	1700016C15Rik (ENSMOCG00000022902) #17	Zbtb18 (ENSMOCG00000018289) #18	Akt3 (ENSMOCG00000010696) #19	Sdccag8 (ENSMOCG00000022174) #21	ENSMOCG00000007828	ENSMOCG00000002769 #22	ENSMOCG00000018239 #22	ENSMOCG00000020684	Pld5 (ENSMOCG00000012598) #23	ENSMOCG00000011680
Prairie vole	MODERN SPECIES	14	Tfb2m (ENSMOCG00000016864)	Smyd3 (ENSMOCG00000019317) #7	Kif26b (ENSMOCG00000018386) #9	Efcab2 (ENSMOCG00000016106) #10	Hnrnpu (ENSMOCG00000015623) #11	Cox20 (ENSMOCG00000020586) #12	Desi2 (ENSMOCG00000017452) #14	ENSMOCG00000017731	Adss (ENSMOCG00000021076) #16	1700016C15Rik (ENSMOCG00000022902) #17	Zbtb18 (ENSMOCG00000018289) #18	Akt3 (ENSMOCG00000010696) #19	Sdccag8 (ENSMOCG00000022174) #21	ENSMOCG00000007828	ENSMOCG00000002769 #22	ENSMOCG00000018239 #22	ENSMOCG00000020684	Pld5 (ENSMOCG00000012598) #23	ENSMOCG00000011680
Northern American deer mouse	MODERN SPECIES	2	Tfb2m (ENSPEMG00000018713)	Smyd3 (ENSPEMG00000002180) #7	Kif26b (ENSPEMG00000007146) #9	ENSPEMG00000008954 #10	Hnrnpu (ENSPEMG00000009568) #11	ENSPEMG00000029548	Cox20 (ENSPEMG00000010346) #12	Desi2 (ENSPEMG00000010913) #14	ENSPEMG00000024531 #15	Adss (ENSPEMG00000012013) #16	Zbtb18 (ENSPEMG00000025154) #18	ENSPEMG00000013477	Akt3 (ENSPEMG00000019381) #19	ENSPEMG00000028582	Sdccag8 (ENSPEMG00000019543) #21	Cep170 (ENSPEMG00000020234) #22	Pld5 (ENSPEMG00000020103) #23	Becn2 (ENSPEMG00000016424) #27	Exo1 (ENSPEMG00000019110) #28	ENSPEMG00000027400	Wdr64 (ENSPEMG00000015374) #29	Opn3 (ENSPEMG00000018829) #30	Kmo (ENSPEMG00000010016) #31	Fh1 (ENSPEMG00000012348) #32	Rgs7 (ENSPEMG00000015345) #33	Grem2 (ENSPEMG00000029383) #34	Fmn2 (ENSPEMG00000023904) #35	ENSPEMG00000024636	Or6y1 (ENSPEMG00000005776)	ENSPEMG00000027517	ENSPEMG00000024888
Murinae	ANCESTRAL SPECIES	11	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.d #11	ENSGT01050000248390	ENSGT00940000156546.c #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT00940000161831	ENSGT00940000162983	ENSGT00940000161240
Mus	ANCESTRAL SPECIES	5	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.c #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT00940000161831.eb	ENSGT00940000162983	ENSGT00940000161240
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.c #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00730000111185.n.b	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01060000248581.B	ENSGT00940000161831.db	ENSGT00940000161831.eb
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.c #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00730000111185.n.b	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT00940000161831.db	ENSGT00940000161831.eb
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546.c #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01090000260024.A.a.b.a.b.a.a.b	ENSGT00940000161831.eb	ENSGT01100000263515.a.b.a.b.b.h.a.a.a	ENSGT00940000162983
Steppe mouse	MODERN SPECIES	2903										Adss (ENSMSIG00000008712) #16	1700016C15Rik (ENSMSIG00000008684) #17	Zbtb18 (ENSMSIG00000008641) #18	Akt3 (ENSMSIG00000008489) #19	ENSMSIG00000008464	Sdccag8 (ENSMSIG00000008255) #21	Cep170 (ENSMSIG00000007906) #22
spretus	MODERN SPECIES		Cnst (MGP_SPRETEiJ_G0015767)	MGP_SPRETEiJ_G0015766	MGP_SPRETEiJ_G0015765	Smyd3 (MGP_SPRETEiJ_G0015764) #7	Kif26b (MGP_SPRETEiJ_G0015763) #9	Efcab2 (MGP_SPRETEiJ_G0015762) #10	Hnrnpu (MGP_SPRETEiJ_G0015761) #11	MGP_SPRETEiJ_G0015760 #11	Cox20 (MGP_SPRETEiJ_G0015759) #12	Desi2 (MGP_SPRETEiJ_G0015758) #14	Adss (MGP_SPRETEiJ_G0015757) #16	1700016C15Rik (MGP_SPRETEiJ_G0015756) #17	Zbtb18 (MGP_SPRETEiJ_G0015755) #18	Akt3 (MGP_SPRETEiJ_G0015754) #19	Sdccag8 (MGP_SPRETEiJ_G0015753) #21	Cep170 (MGP_SPRETEiJ_G0015752) #22	MGP_SPRETEiJ_G0015751	Pld5 (MGP_SPRETEiJ_G0015750) #23	Becn2 (MGP_SPRETEiJ_G0015749) #27	Exo1 (MGP_SPRETEiJ_G0015748) #28	Wdr64 (MGP_SPRETEiJ_G0015747) #29	Chml (MGP_SPRETEiJ_G0015746)	Opn3 (MGP_SPRETEiJ_G0015745) #30	Kmo (MGP_SPRETEiJ_G0015744) #31	Fh1 (MGP_SPRETEiJ_G0015743) #32	Rgs7 (MGP_SPRETEiJ_G0015742) #33	Grem2 (MGP_SPRETEiJ_G0015741) #34	Fmn2 (MGP_SPRETEiJ_G0015740) #35	Or6y1 (MGP_SPRETEiJ_G0015739)	Or6p1 (MGP_SPRETEiJ_G0015738)	Or10x1 (MGP_SPRETEiJ_G0015737)
Mouse	MODERN SPECIES		Cnst (ENSMUSG00000038949)	Tfb2m (ENSMUSG00000026492)	Smyd3 (ENSMUSG00000055067) #7	Kif26b (ENSMUSG00000026494) #9	Efcab2 (ENSMUSG00000026495) #10	Hnrnpu (ENSMUSG00000039630) #11	Cox20 (ENSMUSG00000026500) #12	Desi2 (ENSMUSG00000026502) #14	Catspere2 (ENSMUSG00000091476) #15	Catspere1 (ENSMUSG00000102483) #15	Adss (ENSMUSG00000015961) #16	1700016C15Rik (ENSMUSG00000015962) #17	Zbtb18 (ENSMUSG00000063659) #18	Akt3 (ENSMUSG00000019699) #19	Sdccag8 (ENSMUSG00000026504) #21	Cep170 (ENSMUSG00000057335) #22	Rbm8a2 (ENSMUSG00000078184)	Pld5 (ENSMUSG00000055214) #23	Becn2 (ENSMUSG00000104158) #27	Exo1 (ENSMUSG00000039748) #28	Wdr64 (ENSMUSG00000026523) #29	Chml (ENSMUSG00000078185)	Opn3 (ENSMUSG00000026525) #30	Kmo (ENSMUSG00000039783) #31	Fh1 (ENSMUSG00000026526) #32	Rgs7 (ENSMUSG00000026527) #33	Grem2 (ENSMUSG00000050069) #34	Fmn2 (ENSMUSG00000028354) #35	Or6y1 (ENSMUSG00000066671)	Or6p1 (ENSMUSG00000051509)	Or10x4 (ENSMUSG00000059503)
Ryukyu mouse	MODERN SPECIES		MGP_CAROLIEiJ_G0014967	MGP_CAROLIEiJ_G0014966	Smyd3 (MGP_CAROLIEiJ_G0014965) #7	Kif26b (MGP_CAROLIEiJ_G0014964) #9	Efcab2 (MGP_CAROLIEiJ_G0014963) #10	Hnrnpu (MGP_CAROLIEiJ_G0014962) #11	MGP_CAROLIEiJ_G0014961 #11	Cox20 (MGP_CAROLIEiJ_G0014960) #12	Desi2 (MGP_CAROLIEiJ_G0014959) #14	MGP_CAROLIEiJ_G0014958	Adss (MGP_CAROLIEiJ_G0014957) #16	1700016C15Rik (MGP_CAROLIEiJ_G0014956) #17	Zbtb18 (MGP_CAROLIEiJ_G0014955) #18	Akt3 (MGP_CAROLIEiJ_G0014954) #19	Sdccag8 (MGP_CAROLIEiJ_G0014953) #21	Cep170 (MGP_CAROLIEiJ_G0014952) #22	Rbm8a2 (MGP_CAROLIEiJ_G0014951)	Pld5 (MGP_CAROLIEiJ_G0014950) #23	Becn2 (MGP_CAROLIEiJ_G0014949) #27	Exo1 (MGP_CAROLIEiJ_G0014948) #28	Wdr64 (MGP_CAROLIEiJ_G0014947) #29	Chml (MGP_CAROLIEiJ_G0014946)	Opn3 (MGP_CAROLIEiJ_G0014945) #30	Kmo (MGP_CAROLIEiJ_G0014944) #31	Fh1 (MGP_CAROLIEiJ_G0014943) #32	Rgs7 (MGP_CAROLIEiJ_G0014942) #33	Grem2 (MGP_CAROLIEiJ_G0014941) #34	MGP_CAROLIEiJ_G0014940	Or6y1 (MGP_CAROLIEiJ_G0014939)	Or6p1 (MGP_CAROLIEiJ_G0014938)	Or10x4 (MGP_CAROLIEiJ_G0014937)
Shrew mouse	MODERN SPECIES	18	Cnst (MGP_PahariEiJ_G0028199)	MGP_PahariEiJ_G0028198	MGP_PahariEiJ_G0028197	Smyd3 (MGP_PahariEiJ_G0028196) #7	Kif26b (MGP_PahariEiJ_G0028195) #9	Efcab2 (MGP_PahariEiJ_G0028194) #10	Hnrnpu (MGP_PahariEiJ_G0028193) #11	MGP_PahariEiJ_G0028192 #11	Cox20 (MGP_PahariEiJ_G0028191) #12	MGP_PahariEiJ_G0028190 #14	Adss (MGP_PahariEiJ_G0028189) #16	1700016C15Rik (MGP_PahariEiJ_G0028188) #17	Zbtb18 (MGP_PahariEiJ_G0028187) #18	Akt3 (MGP_PahariEiJ_G0028186) #19	Sdccag8 (MGP_PahariEiJ_G0028185) #21	Cep170 (MGP_PahariEiJ_G0028184) #22	Pld5 (MGP_PahariEiJ_G0028183) #23	Becn2 (MGP_PahariEiJ_G0028182) #27	Exo1 (MGP_PahariEiJ_G0028181) #28	Wdr64 (MGP_PahariEiJ_G0028180) #29	Chml (MGP_PahariEiJ_G0028179)	Opn3 (MGP_PahariEiJ_G0028178) #30	Kmo (MGP_PahariEiJ_G0028177) #31	Fh1 (MGP_PahariEiJ_G0028176) #32	Rgs7 (MGP_PahariEiJ_G0028175) #33	Grem2 (MGP_PahariEiJ_G0028174) #34	MGP_PahariEiJ_G0028173 #35	Or6y1 (MGP_PahariEiJ_G0028172)	Or6p1 (MGP_PahariEiJ_G0028171)	MGP_PahariEiJ_G0028170	MGP_PahariEiJ_G0028169
Rat	MODERN SPECIES	4	Tfb2m (ENSRNOG00000002695)	Smyd3 (ENSRNOG00000066304) #7	Kif26b (ENSRNOG00000028624) #9	Efcab2 (ENSRNOG00000042201) #10	Hnrnpu (ENSRNOG00000033790) #11	ENSRNOG00000066591	Btf3-ps1 (ENSRNOG00000031864)	Desi2 (ENSRNOG00000004524) #14	Catspere (ENSRNOG00000056537) #15	Adss (ENSRNOG00000004481) #16	C13h1orf100 (ENSRNOG00000021411) #17	Zbtb18 (ENSRNOG00000004423) #18	Rpl30l1 (ENSRNOG00000057677)	Akt3 (ENSRNOG00000021497) #19	Sdccag8 (ENSRNOG00000004181) #21	Cep170 (ENSRNOG00000004127) #22	Pld5 (ENSRNOG00000003997) #23	Becn2 (ENSRNOG00000038076) #27	Exo1 (ENSRNOG00000056209) #28	ENSRNOG00000064024	Wdr64 (ENSRNOG00000038083) #29	Opn3 (ENSRNOG00000003778) #30	Chml (ENSRNOG00000067369)	Kmo (ENSRNOG00000003709) #31	Fh (ENSRNOG00000003653) #32	Rgs7 (ENSRNOG00000021984) #33	Grem2 (ENSRNOG00000003616) #34	Fmn2 (ENSRNOG00000061764) #35	Or6y1 (ENSRNOG00000022063)	Or6p1 (ENSRNOG00000069658)	Or10x1 (ENSRNOG00000066161)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1473	Cnst (ENSNGAG00000001157)	Tfb2m (ENSNGAG00000018240)	ENSNGAG00000005247	Smyd3 (ENSNGAG00000014029) #7	ENSNGAG00000013762 #9	Efcab2 (ENSNGAG00000017119) #10	Hnrnpu (ENSNGAG00000019075) #11	Cox20 (ENSNGAG00000002776) #12	Desi2 (ENSNGAG00000017919) #14	ENSNGAG00000000401	Adss (ENSNGAG00000003132) #16	ENSNGAG00000006928	Zbtb18 (ENSNGAG00000008361) #18	Akt3 (ENSNGAG00000013336) #19	Sdccag8 (ENSNGAG00000015552) #21	Cep170 (ENSNGAG00000019300) #22	ENSNGAG00000014315	Pld5 (ENSNGAG00000020901) #23	Becn2 (ENSNGAG00000015212) #27	ENSNGAG00000018547 #28	Wdr64 (ENSNGAG00000002915) #29	Opn3 (ENSNGAG00000013479) #30	Kmo (ENSNGAG00000017177) #31	Fh1 (ENSNGAG00000013874) #32
Lesser Egyptian jerboa	MODERN SPECIES	51	Kif28 (ENSJJAG00000009428)	Sccpdh (ENSJJAG00000016528)	Cnst (ENSJJAG00000019924)	Tfb2m (ENSJJAG00000019285)	Smyd3 (ENSJJAG00000024434) #7	Kif26b (ENSJJAG00000021322) #9	Efcab2 (ENSJJAG00000001490) #10	Hnrnpu (ENSJJAG00000011371) #11	ENSJJAG00000019395 #12	ENSJJAG00000024194 #14	Adss (ENSJJAG00000021726) #16	1700016C15Rik (ENSJJAG00000024007) #17	Zbtb18 (ENSJJAG00000021234) #18	Akt3 (ENSJJAG00000010899) #19	Sdccag8 (ENSJJAG00000021886) #21	Cep170 (ENSJJAG00000014809) #22	ENSJJAG00000022798	Pld5 (ENSJJAG00000011744) #23	Wdr64 (ENSJJAG00000016288) #29	Opn3 (ENSJJAG00000020588) #30	Kmo (ENSJJAG00000018020) #31	Fh1 (ENSJJAG00000004989) #32	Rgs7 (ENSJJAG00000011876) #33	Grem2 (ENSJJAG00000010680) #34	ENSJJAG00000018468 #35	Ube2w (ENSJJAG00000005058)	Stau2 (ENSJJAG00000020228)	ENSJJAG00000020804	Rdh10 (ENSJJAG00000016046)	ENSJJAG00000005973	ENSJJAG00000022218
Kangaroo rat	MODERN SPECIES	354	Sccpdh (ENSDORG00000005002)	ENSDORG00000009570	Tfb2m (ENSDORG00000026012)	Smyd3 (ENSDORG00000001030) #7	Kif26b (ENSDORG00000027986) #9	Efcab2 (ENSDORG00000027552) #10	Hnrnpu (ENSDORG00000015491) #11	Cox20 (ENSDORG00000023905) #12	Desi2 (ENSDORG00000002787) #14	Adss (ENSDORG00000010974) #16	1700016C15Rik (ENSDORG00000010973) #17	ENSDORG00000029972 #18	Akt3 (ENSDORG00000004303) #19	Sdccag8 (ENSDORG00000000842) #21	ENSDORG00000029309	Cep170 (ENSDORG00000029922) #22	Uchl5 (ENSDORG00000013932)	Ro60 (ENSDORG00000006152)	ENSDORG00000006154	Cdc73 (ENSDORG00000000552)	B3galt2 (ENSDORG00000023725)	Kcnt2 (ENSDORG00000008155)	ENSDORG00000008157	F13b (ENSDORG00000001410)	Aspm (ENSDORG00000001415)	Zbtb41 (ENSDORG00000001433)	ENSDORG00000024261	Lhx9 (ENSDORG00000002192)	Nek7 (ENSDORG00000011235)	Atp6v1g3 (ENSDORG00000025262)	Ptprc (ENSDORG00000016235)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT01030000235112 #37
Hystricomorpha	ANCESTRAL SPECIES	49	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000157923	ENSGT00940000156484.b	ENSGT00960000186787	ENSGT00940000156989	ENSGT00950000182836.b.a.b	ENSGT00390000011724	ENSGT00530000064210	ENSGT01030000234620.a.b.b.b	ENSGT00390000017528	ENSGT00940000162504	ENSGT00940000156376	ENSGT00940000162770	ENSGT00940000161120	ENSGT00390000001374.d
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	16	ENSHGLG00000034325 #10	ENSHGLG00000042794	ENSHGLG00000010594 #11	COX20 (ENSHGLG00000015836) #12	ENSHGLG00000043796	ENSHGLG00000015935	ENSHGLG00000035202 #14	ENSHGLG00000041745 #15	ENSHGLG00000009917 #17	ADSS (ENSHGLG00000007672) #16	ZBTB18 (ENSHGLG00000003880) #18	ENSHGLG00000043051	AKT3 (ENSHGLG00000006424) #19	ENSHGLG00000004271 #21	ENSHGLG00000038674 #22	ENSHGLG00000006465 #22	ENSHGLG00000011191	ENSHGLG00000043505	ENSHGLG00000006833	ENSHGLG00000040176	ENSHGLG00000004656 #23	MAP1LC3C (ENSHGLG00000037027) #25	ENSHGLG00000032112	ENSHGLG00000005464	ENSHGLG00000037874	ENSHGLG00000028910	NEK2 (ENSHGLG00000004280)	LPGAT1 (ENSHGLG00000008115)	INTS7 (ENSHGLG00000005372)	DTL (ENSHGLG00000006063)	ENSHGLG00000003379
Naked mole-rat female	MODERN SPECIES	16	ENSHGLG00000015928 #9	ENSHGLG00000034325 #10	ENSHGLG00000042794	ENSHGLG00000010594 #11	COX20 (ENSHGLG00000015836) #12	ENSHGLG00000043796	ENSHGLG00000015935	ENSHGLG00000035202 #14	ENSHGLG00000041745 #15	ENSHGLG00000009917 #17	ADSS (ENSHGLG00000007672) #16	ZBTB18 (ENSHGLG00000003880) #18	ENSHGLG00000043051	AKT3 (ENSHGLG00000006424) #19	ENSHGLG00000004271 #21	ENSHGLG00000038674 #22	ENSHGLG00000006465 #22	ENSHGLG00000011191	ENSHGLG00000043505	ENSHGLG00000006833	ENSHGLG00000040176	ENSHGLG00000004656 #23	MAP1LC3C (ENSHGLG00000037027) #25	ENSHGLG00000032112	ENSHGLG00000005464	ENSHGLG00000037874	ENSHGLG00000028910	NEK2 (ENSHGLG00000004280)	LPGAT1 (ENSHGLG00000008115)	INTS7 (ENSHGLG00000005372)	DTL (ENSHGLG00000006063)
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000157923	ENSGT00940000156484.b	ENSGT00940000156989	ENSGT00950000182836.b.a.b	ENSGT00390000011724	ENSGT00530000064210	ENSGT01030000234620.a.b.b.b	ENSGT00390000017528	ENSGT00940000162504	ENSGT00940000156376	ENSGT00940000162770	ENSGT00940000161120	ENSGT00390000001374.d	ENSGT00720000108846.a
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	13	SCCPDH (ENSCPOG00000029999)	CNST (ENSCPOG00000012012)	ENSCPOG00000013225	SMYD3 (ENSCPOG00000002655) #7	KIF26B (ENSCPOG00000001048) #9	EFCAB2 (ENSCPOG00000024335) #10	HNRNPU (ENSCPOG00000011887) #11	COX20 (ENSCPOG00000032295) #12	DESI2 (ENSCPOG00000002091) #14	ADSS2 (ENSCPOG00000002342) #16	C1orf100 (ENSCPOG00000002339) #17	ZBTB18 (ENSCPOG00000035384) #18	AKT3 (ENSCPOG00000015504) #19	SDCCAG8 (ENSCPOG00000015503) #21	ENSCPOG00000034860 #22	ENSCPOG00000002683 #22	ENSCPOG00000002221	PLD5 (ENSCPOG00000033411) #23	PSEN2 (ENSCPOG00000001827)	SLC30A1 (ENSCPOG00000013692)	NEK2 (ENSCPOG00000011264)	LPGAT1 (ENSCPOG00000011269)	INTS7 (ENSCPOG00000014960)	DTL (ENSCPOG00000014965)	PPP2R5A (ENSCPOG00000040049)	PACC1 (ENSCPOG00000009329)	ENSCPOG00000033847	ATF3 (ENSCPOG00000034947)	BATF3 (ENSCPOG00000032323)	NSL1 (ENSCPOG00000002451)	TATDN3 (ENSCPOG00000002454)
Guinea pig	MODERN SPECIES	13	ENSCPOG00000036159	SCCPDH (ENSCPOG00000029999)	CNST (ENSCPOG00000012012)	ENSCPOG00000013225	SMYD3 (ENSCPOG00000002655) #7	KIF26B (ENSCPOG00000001048) #9	EFCAB2 (ENSCPOG00000024335) #10	HNRNPU (ENSCPOG00000011887) #11	COX20 (ENSCPOG00000032295) #12	DESI2 (ENSCPOG00000002091) #14	ADSS2 (ENSCPOG00000002342) #16	C1orf100 (ENSCPOG00000002339) #17	ZBTB18 (ENSCPOG00000035384) #18	AKT3 (ENSCPOG00000015504) #19	SDCCAG8 (ENSCPOG00000015503) #21	ENSCPOG00000034860 #22	ENSCPOG00000002683 #22	ENSCPOG00000002221	PLD5 (ENSCPOG00000033411) #23	PSEN2 (ENSCPOG00000001827)	SLC30A1 (ENSCPOG00000013692)	NEK2 (ENSCPOG00000011264)	LPGAT1 (ENSCPOG00000011269)	INTS7 (ENSCPOG00000014960)	DTL (ENSCPOG00000014965)	PPP2R5A (ENSCPOG00000040049)	PACC1 (ENSCPOG00000009329)	ENSCPOG00000033847	ATF3 (ENSCPOG00000034947)	BATF3 (ENSCPOG00000032323)	NSL1 (ENSCPOG00000002451)
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00660000097201	ENSGT00950000183059.b.a.b #23	ENSGT00940000157923	ENSGT00940000156484.b	ENSGT00940000156989	ENSGT00950000182836.b.a.b	ENSGT00390000011724	ENSGT00530000064210	ENSGT01030000234620.a.b.b.b	ENSGT00390000017528	ENSGT00940000162504	ENSGT00940000156376	ENSGT00940000162770	ENSGT00940000161120	ENSGT00390000001374.d
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	58	KIF26B (ENSODEG00000013218) #9	EFCAB2 (ENSODEG00000013516) #10	ENSODEG00000014131	ENSODEG00000014016	ENSODEG00000014458 #11	ENSODEG00000013336 #12	ENSODEG00000013410	ENSODEG00000013295 #14	ADSS2 (ENSODEG00000015411) #16	C1orf100 (ENSODEG00000012902) #17	ZBTB18 (ENSODEG00000014080) #18	AKT3 (ENSODEG00000013255) #19	ENSODEG00000013767	SDCCAG8 (ENSODEG00000013437) #21	ENSODEG00000014847 #22	ENSODEG00000016144 #22	ENSODEG00000013620 #22	ENSODEG00000014979	ENSODEG00000014152	PLD5 (ENSODEG00000013817) #23	PSEN2 (ENSODEG00000013898)	SLC30A1 (ENSODEG00000014581)	ENSODEG00000013939	ENSODEG00000014021	LPGAT1 (ENSODEG00000013429)	INTS7 (ENSODEG00000013809)	DTL (ENSODEG00000016385)	PPP2R5A (ENSODEG00000014272)	PACC1 (ENSODEG00000013328)	NENF (ENSODEG00000016432)	ATF3 (ENSODEG00000013598)
Degu	MODERN SPECIES	58	SMYD3 (ENSODEG00000012912) #7	KIF26B (ENSODEG00000013218) #9	EFCAB2 (ENSODEG00000013516) #10	ENSODEG00000014131	ENSODEG00000014016	ENSODEG00000014458 #11	ENSODEG00000013336 #12	ENSODEG00000013410	ENSODEG00000013295 #14	ADSS2 (ENSODEG00000015411) #16	C1orf100 (ENSODEG00000012902) #17	ZBTB18 (ENSODEG00000014080) #18	AKT3 (ENSODEG00000013255) #19	ENSODEG00000013767	SDCCAG8 (ENSODEG00000013437) #21	ENSODEG00000014847 #22	ENSODEG00000016144 #22	ENSODEG00000013620 #22	ENSODEG00000014979	ENSODEG00000014152	PLD5 (ENSODEG00000013817) #23	PSEN2 (ENSODEG00000013898)	SLC30A1 (ENSODEG00000014581)	ENSODEG00000013939	ENSODEG00000014021	LPGAT1 (ENSODEG00000013429)	INTS7 (ENSODEG00000013809)	DTL (ENSODEG00000016385)	PPP2R5A (ENSODEG00000014272)	PACC1 (ENSODEG00000013328)	NENF (ENSODEG00000016432)
Degu	MODERN SPECIES	58	EFCAB2 (ENSODEG00000013516) #10	ENSODEG00000014131	ENSODEG00000014016	ENSODEG00000014458 #11	ENSODEG00000013336 #12	ENSODEG00000013410	ENSODEG00000013295 #14	ADSS2 (ENSODEG00000015411) #16	C1orf100 (ENSODEG00000012902) #17	ZBTB18 (ENSODEG00000014080) #18	AKT3 (ENSODEG00000013255) #19	ENSODEG00000013767	SDCCAG8 (ENSODEG00000013437) #21	ENSODEG00000014847 #22	ENSODEG00000016144 #22	ENSODEG00000013620 #22	ENSODEG00000014979	ENSODEG00000014152	PLD5 (ENSODEG00000013817) #23	PSEN2 (ENSODEG00000013898)	SLC30A1 (ENSODEG00000014581)	ENSODEG00000013939	ENSODEG00000014021	LPGAT1 (ENSODEG00000013429)	INTS7 (ENSODEG00000013809)	DTL (ENSODEG00000016385)	PPP2R5A (ENSODEG00000014272)	PACC1 (ENSODEG00000013328)	NENF (ENSODEG00000016432)	ATF3 (ENSODEG00000013598)	GARIN4 (ENSODEG00000013574)
Long-tailed chinchilla	MODERN SPECIES	113	SCCPDH (ENSCLAG00000009869)	CNST (ENSCLAG00000008046)	TFB2M (ENSCLAG00000008614)	SMYD3 (ENSCLAG00000010031) #7	KIF26B (ENSCLAG00000012108) #9	EFCAB2 (ENSCLAG00000008343) #10	ENSCLAG00000007770 #12	HNRNPU (ENSCLAG00000007100) #11	DESI2 (ENSCLAG00000011829) #14	CATSPERE (ENSCLAG00000009169) #15	ADSS2 (ENSCLAG00000008748) #16	C1orf100 (ENSCLAG00000007599) #17	ZBTB18 (ENSCLAG00000015788) #18	ENSCLAG00000009649 #19	SDCCAG8 (ENSCLAG00000011676) #21	CEP170 (ENSCLAG00000015564) #22	ENSCLAG00000010377	PLD5 (ENSCLAG00000014400) #23	PSEN2 (ENSCLAG00000013788)	SLC30A1 (ENSCLAG00000009695)	NEK2 (ENSCLAG00000010880)	LPGAT1 (ENSCLAG00000011509)	INTS7 (ENSCLAG00000011748)	DTL (ENSCLAG00000014236)	PPP2R5A (ENSCLAG00000012816)	PACC1 (ENSCLAG00000009570)	ENSCLAG00000007912	ATF3 (ENSCLAG00000013767)	NSL1 (ENSCLAG00000015217)	TATDN3 (ENSCLAG00000008909)	SPATA45 (ENSCLAG00000008856)
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590.k #10	ENSGT00940000160590.l #10	ENSGT00940000156546 #11	ENSGT00390000016158.i #12	ENSGT00910000147125	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747.h #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B
Marmotini	ANCESTRAL SPECIES	21	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590.k #10	ENSGT00940000156546 #11	ENSGT00390000016158.i #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT01030000235784	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747.h #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492	ENSGT00390000001775.B.t
Marmotini_b	ANCESTRAL SPECIES	84	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590.k #10	ENSGT00940000156546 #11	ENSGT00390000016158.i #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT01030000235784	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747.h #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35
Arctic ground squirrel	MODERN SPECIES	79	CNST (ENSUPAG00010018148)	ENSUPAG00010018160	SMYD3 (ENSUPAG00010018170) #7	KIF26B (ENSUPAG00010018207) #9	EFCAB2 (ENSUPAG00010018238) #10	HNRNPU (ENSUPAG00010018254) #11	ENSUPAG00010018307 #12	DESI2 (ENSUPAG00010018313) #14	ENSUPAG00010018323 #15	ADSS2 (ENSUPAG00010018358) #16	C1orf100 (ENSUPAG00010018380) #17	ENSUPAG00010018394	ZBTB18 (ENSUPAG00010018400) #18	AKT3 (ENSUPAG00010018428) #19	SDCCAG8 (ENSUPAG00010018478) #21	CEP170 (ENSUPAG00010018567) #22	PLD5 (ENSUPAG00010018694) #23	MAP1LC3C (ENSUPAG00010018734) #25	BECN2 (ENSUPAG00010018741) #27	ENSUPAG00010018744 #25	EXO1 (ENSUPAG00010018752) #28	ENSUPAG00010018764	WDR64 (ENSUPAG00010018776) #29	OPN3 (ENSUPAG00010018902) #30	KMO (ENSUPAG00010018908) #31	FH (ENSUPAG00010018928) #32	RGS7 (ENSUPAG00010018948) #33	GREM2 (ENSUPAG00010018995) #34	FMN2 (ENSUPAG00010018998) #35	ENSUPAG00010019027
Squirrel	MODERN SPECIES	126	ENSSTOG00000025585	CNST (ENSSTOG00000000432)	TFB2M (ENSSTOG00000034162)	SMYD3 (ENSSTOG00000028065) #7	KIF26B (ENSSTOG00000028101) #9	ENSSTOG00000031476 #10	ENSSTOG00000000153 #11	COX20 (ENSSTOG00000000151) #12	DESI2 (ENSSTOG00000004752) #14	ADSS2 (ENSSTOG00000004376) #16	C1orf100 (ENSSTOG00000022394) #17	ZBTB18 (ENSSTOG00000004290) #18	AKT3 (ENSSTOG00000010595) #19	ENSSTOG00000030430	SDCCAG8 (ENSSTOG00000010585) #21	CEP170 (ENSSTOG00000008203) #22	PLD5 (ENSSTOG00000031877) #23	MAP1LC3C (ENSSTOG00000010423) #25	BECN2 (ENSSTOG00000027748) #27	ENSSTOG00000012715 #29	OPN3 (ENSSTOG00000012707) #30	KMO (ENSSTOG00000012690) #31	FH (ENSSTOG00000012681) #32	RGS7 (ENSSTOG00000006862) #33	GREM2 (ENSSTOG00000007628) #34	FMN2 (ENSSTOG00000025339) #35
Alpin marmot	MODERN SPECIES	12	CNST (ENSMMMG00000024021)	TFB2M (ENSMMMG00000024017)	SMYD3 (ENSMMMG00000024012) #7	KIF26B (ENSMMMG00000024009) #9	EFCAB2 (ENSMMMG00000024005) #10	HNRNPU (ENSMMMG00000023721) #11	COX20 (ENSMMMG00000023713) #12	DESI2 (ENSMMMG00000023711) #14	ENSMMMG00000023709 #15	ADSS2 (ENSMMMG00000023707) #16	C1orf100 (ENSMMMG00000023704) #17	ENSMMMG00000023703	ENSMMMG00000023698 #18	AKT3 (ENSMMMG00000023693) #19	SDCCAG8 (ENSMMMG00000023689) #21	CEP170 (ENSMMMG00000023685) #22	PLD5 (ENSMMMG00000023675) #23	MAP1LC3C (ENSMMMG00000023673) #25	BECN2 (ENSMMMG00000023671) #27	ENSMMMG00000023670 #25	EXO1 (ENSMMMG00000023668) #28	WDR64 (ENSMMMG00000023654) #29	OPN3 (ENSMMMG00000023648) #30	KMO (ENSMMMG00000023641) #31	FH (ENSMMMG00000023640) #32	RGS7 (ENSMMMG00000023632) #33	GREM2 (ENSMMMG00000023631) #34	FMN2 (ENSMMMG00000023630) #35	ENSMMMG00000023628	OPTN (ENSMMMG00000023620)	MCM10 (ENSMMMG00000023613)
Eurasian red squirrel	MODERN SPECIES	3	SMYD3 (ENSSVLG00005023822) #7	ENSSVLG00005023802	ENSSVLG00005023779	KIF26B (ENSSVLG00005023636) #9	ENSSVLG00005023557 #10	HNRNPU (ENSSVLG00005023262) #11	ENSSVLG00005023185 #12	ENSSVLG00005023149	DESI2 (ENSSVLG00005023102) #14	CATSPERE (ENSSVLG00005022809) #15	ENSSVLG00005022682 #16	C1orf100 (ENSSVLG00005022598) #17	ZBTB18 (ENSSVLG00005022559) #18	AKT3 (ENSSVLG00005022494) #19	SDCCAG8 (ENSSVLG00005022441) #21	CEP170 (ENSSVLG00005022337) #22	ENSSVLG00005022301	PLD5 (ENSSVLG00005022151) #23	MAP1LC3C (ENSSVLG00005022067) #25	BECN2 (ENSSVLG00005022043) #27	ENSSVLG00005022002 #25	EXO1 (ENSSVLG00005021837) #28	WDR64 (ENSSVLG00005021468) #29	OPN3 (ENSSVLG00005021384) #30	KMO (ENSSVLG00005021004) #31	FH (ENSSVLG00005020886) #32	RGS7 (ENSSVLG00005020300) #33	ENSSVLG00005020174	ENSSVLG00005020137	ENSSVLG00005020122	ENSSVLG00005020073
Lagomorpha	ANCESTRAL SPECIES	243									ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060.t #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27
Rabbit	MODERN SPECIES	7	EFCAB2 (ENSOCUG00000029593) #10	HNRNPU (ENSOCUG00000014469) #11	ENSOCUG00000039107 #12	ENSOCUG00000023897	ENSOCUG00000038233	ENSOCUG00000033583	DESI2 (ENSOCUG00000012551) #14	CATSPERE (ENSOCUG00000012540) #15	ENSOCUG00000017531	ADSS2 (ENSOCUG00000013982) #16	C1orf100 (ENSOCUG00000030082) #17	ZBTB18 (ENSOCUG00000007968) #18	AKT3 (ENSOCUG00000015901) #19	ENSOCUG00000037452	SDCCAG8 (ENSOCUG00000015881) #21	CEP170 (ENSOCUG00000000173) #22	PLD5 (ENSOCUG00000009192) #23	ENSOCUG00000034818	ENSOCUG00000027414 #25	BECN2 (ENSOCUG00000017468) #27	ENSOCUG00000007716 #29	ENSOCUG00000025961 #30	ENSOCUG00000028015	GPR137B (ENSOCUG00000012779)	ERO1B (ENSOCUG00000012789)	EDARADD (ENSOCUG00000022288)	ENSOCUG00000025911	LGALS8 (ENSOCUG00000013996)	HEATR1 (ENSOCUG00000014007)	ACTN2 (ENSOCUG00000017871)	MTR (ENSOCUG00000009762)
Pika	MODERN SPECIES	1224															ENSOPRG00000018706	ENSOPRG00000009427 #22
Tree shrew	MODERN SPECIES	2141																CEP170 (ENSTBEG00000009464) #22
Laurasiatheria	ANCESTRAL SPECIES	28	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34
Suina	ANCESTRAL SPECIES	55	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005.k #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28
Pig	MODERN SPECIES	1	KIF26B (ENSSSCG00000010879) #9	ENSSSCG00000063102	EFCAB2 (ENSSSCG00000010878) #10	HNRNPU (ENSSSCG00000010877) #11	COX20 (ENSSSCG00000039618) #12	ENSSSCG00000059887	ENSSSCG00000059272	ENSSSCG00000044211	DESI2 (ENSSSCG00000010876) #14	CATSPERE (ENSSSCG00000035850) #15	ADSS2 (ENSSSCG00000010874) #16	C1orf100 (ENSSSCG00000053143) #17	ZBTB18 (ENSSSCG00000060083) #18	AKT3 (ENSSSCG00000010872) #19	SDCCAG8 (ENSSSCG00000035136) #21	CEP170 (ENSSSCG00000030502) #22	PLD5 (ENSSSCG00000021132) #23	BECN2 (ENSSSCG00000010868) #27	MAP1LC3C (ENSSSCG00000054590) #25	ENSSSCG00000060649	EXO1 (ENSSSCG00000010865) #28	ENSSSCG00000051937	SCCPDH (ENSSSCG00000010866)	ENSSSCG00000060854	AHCTF1 (ENSSSCG00000010863)	CDC42BPA (ENSSSCG00000010862)	COQ8A (ENSSSCG00000010861)	PSEN2 (ENSSSCG00000010860)	ENSSSCG00000040100	ENSSSCG00000046588	STUM (ENSSSCG00000024288)
Chacoan peccary	MODERN SPECIES	81	SCCPDH (ENSCWAG00000002496)	CNST (ENSCWAG00000002475)	TFB2M (ENSCWAG00000002455)	SMYD3 (ENSCWAG00000002432) #7	KIF26B (ENSCWAG00000002398) #9	EFCAB2 (ENSCWAG00000002370) #10	HNRNPU (ENSCWAG00000002240) #11	COX20 (ENSCWAG00000002207) #12	ENSCWAG00000002184 #14	CATSPERE (ENSCWAG00000002042) #15	ADSS2 (ENSCWAG00000001982) #16	C1orf100 (ENSCWAG00000001960) #17	ZBTB18 (ENSCWAG00000001944) #18	AKT3 (ENSCWAG00000001916) #19	SDCCAG8 (ENSCWAG00000001897) #21	CEP170 (ENSCWAG00000001838) #22	PLD5 (ENSCWAG00000001768) #23	ENSCWAG00000001728 #27	MAP1LC3C (ENSCWAG00000001710) #25	EXO1 (ENSCWAG00000001682) #28
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34
Camelidae	ANCESTRAL SPECIES	42	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34
Arabian camel	MODERN SPECIES	15	ENSCDRG00005010260	TFB2M (ENSCDRG00005010290)	SMYD3 (ENSCDRG00005010356) #7	KIF26B (ENSCDRG00005010480) #9	EFCAB2 (ENSCDRG00005010782) #10	HNRNPU (ENSCDRG00005010945) #11	COX20 (ENSCDRG00005012045) #12	DESI2 (ENSCDRG00005012108) #14	CATSPERE (ENSCDRG00005012216) #15	ENSCDRG00005012892	ADSS (ENSCDRG00005012920) #16	C1orf100 (ENSCDRG00005013003) #17	ENSCDRG00005013085 #18	ENSCDRG00005013167 #19	SDCCAG8 (ENSCDRG00005013241) #21	CEP170 (ENSCDRG00005013439) #22	PLD5 (ENSCDRG00005013810) #23	BECN2 (ENSCDRG00005014073) #27	EXO1 (ENSCDRG00005014129) #28	WDR64 (ENSCDRG00005014181) #29	CHML (ENSCDRG00005014383)	KMO (ENSCDRG00005014408) #31	FH (ENSCDRG00005014551) #32	RGS7 (ENSCDRG00005014699) #33	GREM2 (ENSCDRG00005015158) #34	RNF2 (ENSCDRG00005015182)	TRMT1L (ENSCDRG00005015223)	SWT1 (ENSCDRG00005015345)	IVNS1ABP (ENSCDRG00005015575)	HMCN1 (ENSCDRG00005015717)	ENSCDRG00005015910
Alpaca	MODERN SPECIES	2290														AKT3 (ENSVPAG00000003098) #19	SDCCAG8 (ENSVPAG00000003092) #21	CEP170 (ENSVPAG00000003087) #22	PLD5 (ENSVPAG00000003083) #23	EXO1 (ENSVPAG00000003078) #28	WDR64 (ENSVPAG00000003070) #29	KMO (ENSVPAG00000003064) #31	FH (ENSVPAG00000003061) #32	RGS7 (ENSVPAG00000003057) #33	GREM2 (ENSVPAG00000003056) #34
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00960000192543	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33
Cetacea	ANCESTRAL SPECIES	23	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00960000192543	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000167085.b.a	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00960000192543	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000167085.b.a	ENSGT00940000156546 #11	ENSGT00410000028378	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00960000192543	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33
Dolphin	MODERN SPECIES	783																CEP170 (ENSTTRG00000006914) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000156992 #9	ENSGT00940000157251.gb.a.b	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000167085.b.a	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00970000198226	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00940000174587	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00960000192543	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000157251.gb.a.b	ENSGT00940000160590 #10	ENSGT00940000167085.b.a	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00970000198226	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00940000174587	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00390000008496.j.a.a.b	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00960000192543	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000156422.z	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a
Narwhal	MODERN SPECIES	304	ENSMMNG00015001589	SMYD3 (ENSMMNG00015001622) #7	KIF26B (ENSMMNG00015001645) #9	ENSMMNG00015001686	EFCAB2 (ENSMMNG00015001711) #10	ENSMMNG00015001758	HNRNPU (ENSMMNG00015001837) #11	COX20 (ENSMMNG00015002034) #12	DESI2 (ENSMMNG00015002070) #14	ENSMMNG00015002116	CATSPERE (ENSMMNG00015002177) #15	ADSS2 (ENSMMNG00015002323) #16	ZBTB18 (ENSMMNG00015002362) #18	AKT3 (ENSMMNG00015002390) #19	SDCCAG8 (ENSMMNG00015002446) #21	CEP170 (ENSMMNG00015002570) #22	ENSMMNG00015002619	PLD5 (ENSMMNG00015002650) #23	ENSMMNG00015002712 #27	ENSMMNG00015002733	MAP1LC3C (ENSMMNG00015002739) #25	EXO1 (ENSMMNG00015002760) #28	WDR64 (ENSMMNG00015002862) #29	ENSMMNG00015002941	CHML (ENSMMNG00015002946)	KMO (ENSMMNG00015002991) #31	FH (ENSMMNG00015003102) #32	RGS7 (ENSMMNG00015003213) #33	ENSMMNG00015003390	TMEM183A (ENSMMNG00015003415)	PPFIA4 (ENSMMNG00015003458)
Beluga whale	MODERN SPECIES	21	ENSDLEG00000012311	KIF26B (ENSDLEG00000012323) #9	ENSDLEG00000012364	EFCAB2 (ENSDLEG00000012377) #10	ENSDLEG00000012400	HNRNPU (ENSDLEG00000012413) #11	ENSDLEG00000012436 #12	DESI2 (ENSDLEG00000012443) #14	ENSDLEG00000012464	ENSDLEG00000012469 #15	ADSS (ENSDLEG00000012482) #16	C1orf100 (ENSDLEG00000012503) #17	ENSDLEG00000012518 #18	AKT3 (ENSDLEG00000012542) #19	SDCCAG8 (ENSDLEG00000012672) #21	CEP170 (ENSDLEG00000012739) #22	PLD5 (ENSDLEG00000012909) #23	ENSDLEG00000012921 #27	ENSDLEG00000012926	MAP1LC3C (ENSDLEG00000012929) #25	EXO1 (ENSDLEG00000012936) #28	WDR64 (ENSDLEG00000012993) #29	CHML (ENSDLEG00000013107)	KMO (ENSDLEG00000013114) #31	FH (ENSDLEG00000013143) #32	RGS7 (ENSDLEG00000013175) #33	ENSDLEG00000013242
Vaquita	MODERN SPECIES		KIF26B (ENSPSNG00000002808) #9	ENSPSNG00000002787	ENSPSNG00000002773	ENSPSNG00000002754	EFCAB2 (ENSPSNG00000002698) #10	HNRNPU (ENSPSNG00000002595) #11	COX20 (ENSPSNG00000002553) #12	DESI2 (ENSPSNG00000002454) #14	ENSPSNG00000002432	CATSPERE (ENSPSNG00000002409) #15	ADSS2 (ENSPSNG00000002341) #16	ZBTB18 (ENSPSNG00000002322) #18	ENSPSNG00000002237 #19	SDCCAG8 (ENSPSNG00000002144) #21	ENSPSNG00000002116	CEP170 (ENSPSNG00000002060) #22	ENSPSNG00000002004	PLD5 (ENSPSNG00000001962) #23	ENSPSNG00000001933 #27	ENSPSNG00000001924	MAP1LC3C (ENSPSNG00000001915) #25	EXO1 (ENSPSNG00000001879) #28	WDR64 (ENSPSNG00000001764) #29	ENSPSNG00000001713	CHML (ENSPSNG00000001704)	KMO (ENSPSNG00000001618) #31	FH (ENSPSNG00000001550) #32	RGS7 (ENSPSNG00000001350) #33	ENSPSNG00000001221	ENSPSNG00000001209	ENSPSNG00000001192
Sperm whale	MODERN SPECIES	15	ENSPCTG00005021473	SMYD3 (ENSPCTG00005021502) #7	KIF26B (ENSPCTG00005000340) #9	EFCAB2 (ENSPCTG00005000430) #10	ENSPCTG00005000456	HNRNPU (ENSPCTG00005000493) #11	ENSPCTG00005000694 #12	DESI2 (ENSPCTG00005000724) #14	ENSPCTG00005000757	CATSPERE (ENSPCTG00005000795) #15	ADSS (ENSPCTG00005000901) #16	C1orf100 (ENSPCTG00005000925) #17	ZBTB18 (ENSPCTG00005000940) #18	AKT3 (ENSPCTG00005000992) #19	SDCCAG8 (ENSPCTG00005001062) #21	CEP170 (ENSPCTG00005001113) #22	ENSPCTG00005001193	PLD5 (ENSPCTG00005001235) #23	ENSPCTG00005001305	ENSPCTG00005001333 #27	EXO1 (ENSPCTG00005001388) #28	WDR64 (ENSPCTG00005001451) #29	ENSPCTG00005001549	CHML (ENSPCTG00005001557)	KMO (ENSPCTG00005001590) #31	FH (ENSPCTG00005001704) #32	RGS7 (ENSPCTG00005001794) #33	UCK2 (ENSPCTG00005002066)	FAM78B (ENSPCTG00005002081)	POGK (ENSPCTG00005002092)	TADA1 (ENSPCTG00005002107)
Blue whale	MODERN SPECIES		KIF26B (ENSBMSG00010000697) #9	ENSBMSG00010000642	EFCAB2 (ENSBMSG00010000616) #10	HNRNPU (ENSBMSG00010000467) #11	COX20 (ENSBMSG00010000364) #12	ENSBMSG00010000350	DESI2 (ENSBMSG00010000280) #14	ENSBMSG00010000258	CATSPERE (ENSBMSG00010000070) #15	ENSBMSG00010000022 #16	C1orf100 (ENSBMSG00010003557) #17	ZBTB18 (ENSBMSG00010003552) #18	AKT3 (ENSBMSG00010003415) #19	ENSBMSG00010003399	SDCCAG8 (ENSBMSG00010003393) #21	CEP170 (ENSBMSG00010003367) #22	ENSBMSG00010003352	ENSBMSG00010003348	ENSBMSG00010003345	PLD5 (ENSBMSG00010003324) #23	ENSBMSG00010003312	ENSBMSG00010003296 #27	ENSBMSG00010003287	MAP1LC3C (ENSBMSG00010003275) #25	EXO1 (ENSBMSG00010003255) #28	WDR64 (ENSBMSG00010003150) #29	ENSBMSG00010003118 #30	KMO (ENSBMSG00010003065) #31	FH (ENSBMSG00010003027) #32	RGS7 (ENSBMSG00010002822) #33	ENSBMSG00010002782
Pecora	ANCESTRAL SPECIES	22	ENSGT00950000183142.a.b.a.b	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263557.A.b.b	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000009400	ENSGT00940000155052.e.b.b
Percora_a	ANCESTRAL SPECIES	15	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00390000001157.C.kc	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000010512.o.b
Bovidae	ANCESTRAL SPECIES	15	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00390000001157.C.kc	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000010512.o.b
Caprinae	ANCESTRAL SPECIES	12	ENSGT00950000183142.a.b.a.b	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00390000001157.C.kc	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661.j #33	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000010512.o.b	ENSGT00390000009400
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020003854	TFB2M (ENSOARG00020003896)	SMYD3 (ENSOARG00020003928) #7	ENSOARG00020004035	KIF26B (ENSOARG00020004096) #9	EFCAB2 (ENSOARG00020004432) #10	ENSOARG00020004467	HNRNPU (ENSOARG00020004518) #11	COX20 (ENSOARG00020004998) #12	DESI2 (ENSOARG00020005026) #14	ENSOARG00020005072 #15	ENSOARG00020005105 #16	C1orf100 (ENSOARG00020005127) #17	ZBTB18 (ENSOARG00020005168) #18	AKT3 (ENSOARG00020005210) #19	CEP170 (ENSOARG00020005464) #22	PLD5 (ENSOARG00020005705) #23	ENSOARG00020005851	MAP1LC3C (ENSOARG00020005910) #25	EXO1 (ENSOARG00020005940) #28	WDR64 (ENSOARG00020005994) #29	KMO (ENSOARG00020006259) #31	FH (ENSOARG00020006418) #32	RGS7 (ENSOARG00020006899) #33	ENSOARG00020007655	XCL1 (ENSOARG00020007666)	ENSOARG00020007688	DPT (ENSOARG00020007710)	ATP1B1 (ENSOARG00020007736)	NME7 (ENSOARG00020007807)	ENSOARG00020008009
Goat	MODERN SPECIES	7	ENSCHIG00000024072	ENSCHIG00000013167 #7	SMYD3 (ENSCHIG00000019856) #7	KIF26B (ENSCHIG00000026425) #9	EFCAB2 (ENSCHIG00000013755) #10	ENSCHIG00000011421	HNRNPU (ENSCHIG00000004900) #11	ENSCHIG00000014790 #12	DESI2 (ENSCHIG00000020086) #14	ENSCHIG00000010596 #15	ADSS2 (ENSCHIG00000019431) #16	C1orf100 (ENSCHIG00000003781) #17	ENSCHIG00000016215 #18	AKT3 (ENSCHIG00000025145) #19	SDCCAG8 (ENSCHIG00000017782) #21	CEP170 (ENSCHIG00000026612) #22	PLD5 (ENSCHIG00000017711) #23	MAP1LC3C (ENSCHIG00000024130) #25	EXO1 (ENSCHIG00000013001) #28	WDR64 (ENSCHIG00000018653) #29	CHML (ENSCHIG00000002071)	KMO (ENSCHIG00000018212) #31	FH (ENSCHIG00000003286) #32	ENSCHIG00000016226 #33	ENSCHIG00000024203 #33	ENSCHIG00000017060	ENSCHIG00000025827	DPT (ENSCHIG00000014401)	ATP1B1 (ENSCHIG00000023627)	NME7 (ENSCHIG00000009802)	ENSCHIG00000018251
Bovinae	ANCESTRAL SPECIES	12	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00960000190292	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000009400
Bos	ANCESTRAL SPECIES	12	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00960000190292	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000009400
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000160590 #10	ENSGT00510000048856.A	ENSGT00390000002172.A.b	ENSGT00940000161909	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00960000190292	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263480.a.b.a.a.b.a.a.a.b	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946
Domestic yak	MODERN SPECIES	5	EFCAB2 (ENSBGRG00000007527) #10	ENSBGRG00000007708	ENSBGRG00000007746	HNRNPU (ENSBGRG00000007853) #11	COX20 (ENSBGRG00000009065) #12	DESI2 (ENSBGRG00000009112) #14	CATSPERE (ENSBGRG00000009169) #15	ENSBGRG00000009367	ADSS2 (ENSBGRG00000009393) #16	C1orf100 (ENSBGRG00000009512) #17	ENSBGRG00000009623	ZBTB18 (ENSBGRG00000009638) #18	AKT3 (ENSBGRG00000009711) #19	SDCCAG8 (ENSBGRG00000010070) #21	ENSBGRG00000010418	CEP170 (ENSBGRG00000010480) #22	PLD5 (ENSBGRG00000010829) #23	BECN2 (ENSBGRG00000011233) #27	MAP1LC3C (ENSBGRG00000011311) #25	EXO1 (ENSBGRG00000011413) #28	WDR64 (ENSBGRG00000011821) #29	CHML (ENSBGRG00000012256)	KMO (ENSBGRG00000012289) #31	FH (ENSBGRG00000012621) #32	RGS7 (ENSBGRG00000012889) #33	ENSBGRG00000013968	ENSBGRG00000013992	ENSBGRG00000014009	ENSBGRG00000014108	DPT (ENSBGRG00000014147)	ATP1B1 (ENSBGRG00000014219)
Wild yak	MODERN SPECIES	887														AKT3 (ENSBMUG00000015228) #19	SDCCAG8 (ENSBMUG00000015191) #21	CEP170 (ENSBMUG00000015065) #22	ENSBMUG00000014982	PLD5 (ENSBMUG00000014954) #23	BECN2 (ENSBMUG00000014893) #27	ENSBMUG00000014890	MAP1LC3C (ENSBMUG00000014887) #25	EXO1 (ENSBMUG00000014876) #28	WDR64 (ENSBMUG00000014829) #29	ENSBMUG00000014753	KMO (ENSBMUG00000014741) #31	FH (ENSBMUG00000014690) #32	RGS7 (ENSBMUG00000014573) #33	ENSBMUG00000014407	ENSBMUG00000014397	DPT (ENSBMUG00000014388)
Bos_b	ANCESTRAL SPECIES	9	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.a	ENSGT00940000160590 #10	ENSGT01100000263481.n.a.b.a.a.a.a.a.b.a.a.b.a.a.b.a.b	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000008164.d #27	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT01100000263557.A.b.b.c	ENSGT01100000263557.A.b.b.d	ENSGT00390000010760	ENSGT01030000234579.C	ENSGT00940000158946	ENSGT00390000009400
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005026044	EFCAB2 (ENSBIXG00005026031) #10	ENSBIXG00005004429	ENSBIXG00005025963	HNRNPU (ENSBIXG00005025914) #11	COX20 (ENSBIXG00005025757) #12	DESI2 (ENSBIXG00005004387) #14	CATSPERE (ENSBIXG00005025657) #15	ENSBIXG00005025613	ENSBIXG00005025604	ADSS2 (ENSBIXG00005004358) #16	C1orf100 (ENSBIXG00005025567) #17	ZBTB18 (ENSBIXG00005004344) #18	AKT3 (ENSBIXG00005025439) #19	SDCCAG8 (ENSBIXG00005025302) #21	CEP170 (ENSBIXG00005025170) #22	PLD5 (ENSBIXG00005024812) #23	BECN2 (ENSBIXG00005024712) #27	MAP1LC3C (ENSBIXG00005024701) #25	EXO1 (ENSBIXG00005024677) #28	WDR64 (ENSBIXG00005024607) #29	CHML (ENSBIXG00005024458)	KMO (ENSBIXG00005024440) #31	FH (ENSBIXG00005004166) #32	RGS7 (ENSBIXG00005024288) #33	ENSBIXG00005024125	ENSBIXG00005024089	ENSBIXG00005024063	DPT (ENSBIXG00005024017)	ATP1B1 (ENSBIXG00005023955)	NME7 (ENSBIXG00005023880)
Cow	MODERN SPECIES	7	CNST (ENSBTAG00000000511)	TFB2M (ENSBTAG00000000072)	SMYD3 (ENSBTAG00000033180) #7	KIF26B (ENSBTAG00000012715) #9	EFCAB2 (ENSBTAG00000024555) #10	ENSBTAG00000047437	HNRNPU (ENSBTAG00000007606) #11	COX20 (ENSBTAG00000033136) #12	DESI2 (ENSBTAG00000001478) #14	ENSBTAG00000044066 #15	ADSS2 (ENSBTAG00000013885) #16	C16H1orf100 (ENSBTAG00000033127) #17	ZBTB18 (ENSBTAG00000000385) #18	AKT3 (ENSBTAG00000017788) #19	SDCCAG8 (ENSBTAG00000017775) #21	CEP170 (ENSBTAG00000007566) #22	PLD5 (ENSBTAG00000033056) #23	BECN2 (ENSBTAG00000013700) #27	MAP1LC3C (ENSBTAG00000012462) #25	EXO1 (ENSBTAG00000009396) #28	WDR64 (ENSBTAG00000005200) #29	CHML (ENSBTAG00000010803)	KMO (ENSBTAG00000014439) #31	FH (ENSBTAG00000021688) #32	RGS7 (ENSBTAG00000005410) #33	ENSBTAG00000053912	ENSBTAG00000009943	XCL1 (ENSBTAG00000009938)	DPT (ENSBTAG00000021211)	ATP1B1 (ENSBTAG00000002688)	NME7 (ENSBTAG00000002689)
American bison	MODERN SPECIES	2998															SDCCAG8 (ENSBBBG00000017231) #21	CEP170 (ENSBBBG00000017198) #22	ENSBBBG00000017077	PLD5 (ENSBBBG00000017060) #23	BECN2 (ENSBBBG00000004215) #27	MAP1LC3C (ENSBBBG00000017013) #25	EXO1 (ENSBBBG00000004208) #28	WDR64 (ENSBBBG00000016916) #29	ENSBBBG00000008338	KMO (ENSBBBG00000007307) #31	FH (ENSBBBG00000006850) #32	RGS7 (ENSBBBG00000000710) #33	ENSBBBG00000016601	DPT (ENSBBBG00000016591)	ATP1B1 (ENSBBBG00000000737)	NME7 (ENSBBBG00000016575)	ENSBBBG00000006997
Siberian musk deer	MODERN SPECIES	191	ENSMMSG00000002406	EFCAB2 (ENSMMSG00000002421) #10	ENSMMSG00000002446	HNRNPU (ENSMMSG00000002510) #11	ENSMMSG00000003138 #12	ENSMMSG00000003153 #14	CATSPERE (ENSMMSG00000003191) #15	ENSMMSG00000003290 #16	C1orf100 (ENSMMSG00000003308) #17	ENSMMSG00000003313	ENSMMSG00000003326	ZBTB18 (ENSMMSG00000003334) #18	AKT3 (ENSMMSG00000003359) #19	SDCCAG8 (ENSMMSG00000003417) #21	ENSMMSG00000003468	CEP170 (ENSMMSG00000003496) #22
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000012934 #10	ENSCHYG00000013023	ENSCHYG00000013042	HNRNPU (ENSCHYG00000013134) #11	COX20 (ENSCHYG00000014922) #12	ENSCHYG00000015006	DESI2 (ENSCHYG00000015061) #14	CATSPERE (ENSCHYG00000015191) #15	ADSS2 (ENSCHYG00000015582) #16	ENSCHYG00000015654	C1orf100 (ENSCHYG00000015712) #17	ZBTB18 (ENSCHYG00000015900) #18	AKT3 (ENSCHYG00000016172) #19	SDCCAG8 (ENSCHYG00000016893) #21	ENSCHYG00000017307	CEP170 (ENSCHYG00000017491) #22	PLD5 (ENSCHYG00000018377) #23	BECN2 (ENSCHYG00000018602) #27	MAP1LC3C (ENSCHYG00000018633) #25	EXO1 (ENSCHYG00000012020) #28	WDR64 (ENSCHYG00000012124) #29	ENSCHYG00000012605	KMO (ENSCHYG00000012655) #31	FH (ENSCHYG00000012784) #32	RGS7 (ENSCHYG00000012979) #33	ENSCHYG00000013793	DPT (ENSCHYG00000013923)	ATP1B1 (ENSCHYG00000014016)	NME7 (ENSCHYG00000014089)	BLZF1 (ENSCHYG00000014299)	CCDC181 (ENSCHYG00000014390)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.b	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824
Greater horseshoe bat	MODERN SPECIES	19	SCCPDH (ENSRFEG00010015433)	CNST (ENSRFEG00010015524)	TFB2M (ENSRFEG00010015650)	SMYD3 (ENSRFEG00010015677) #7	KIF26B (ENSRFEG00010015778) #9	EFCAB2 (ENSRFEG00010015981) #10	HNRNPU (ENSRFEG00010016043) #11	COX20 (ENSRFEG00010017225) #12	DESI2 (ENSRFEG00010017267) #14	CATSPERE (ENSRFEG00010017401) #15	ENSRFEG00010018000	ADSS2 (ENSRFEG00010018012) #16	C1orf100 (ENSRFEG00010018065) #17	ENSRFEG00010018172 #18	SDCCAG8 (ENSRFEG00010018345) #21	CEP170 (ENSRFEG00010018444) #22	PLD5 (ENSRFEG00010018644) #23	MAP1LC3C (ENSRFEG00010018764) #25	BECN2 (ENSRFEG00010018835) #27	EXO1 (ENSRFEG00010018853) #28	WDR64 (ENSRFEG00010019065) #29	OPN3 (ENSRFEG00010019426) #30	KMO (ENSRFEG00010019488) #31	FH (ENSRFEG00010019556) #32	RGS7 (ENSRFEG00010019674) #33	GREM2 (ENSRFEG00010020207) #34	ENSRFEG00010020220 #35	ENSRFEG00010020281 #35	CHRM3 (ENSRFEG00010020303)	ZP4 (ENSRFEG00010020315)	RYR2 (ENSRFEG00010020432)
Microbat	MODERN SPECIES	1368														AKT3 (ENSMLUG00000014204) #19	SDCCAG8 (ENSMLUG00000014195) #21	CEP170 (ENSMLUG00000014187) #22
Megabat	MODERN SPECIES	1063														AKT3 (ENSPVAG00000016770) #19	SDCCAG8 (ENSPVAG00000016767) #21	CEP170 (ENSPVAG00000016761) #22
Equus	ANCESTRAL SPECIES	41							ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.e #25	ENSGT00390000008164.d #27	ENSGT00940000161852.f #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT00940000156992 #9	ENSGT00940000156766 #7
Donkey	DUPLICATION
Donkey	MODERN SPECIES	23							ENSEASG00005003017 #11	COX20 (ENSEASG00005024069) #12	DESI2 (ENSEASG00005003022) #14	CATSPERE (ENSEASG00005036663) #15	ADSS2 (ENSEASG00005003054) #16	C1orf100 (ENSEASG00005026609) #17	ZBTB18 (ENSEASG00005030332) #18	AKT3 (ENSEASG00005003090) #19	SDCCAG8 (ENSEASG00005003097) #21	ENSEASG00005026305 #22	ENSEASG00005003123 #22	ENSEASG00005035739	PLD5 (ENSEASG00005003142) #23	ENSEASG00005030566 #25	BECN2 (ENSEASG00005003154) #27	EXO1 (ENSEASG00005003159) #28	WDR64 (ENSEASG00005003164) #29	CHML (ENSEASG00005037865)	OPN3 (ENSEASG00005003173) #30	KMO (ENSEASG00005003187) #31	FH (ENSEASG00005003252) #32	RGS7 (ENSEASG00005003257) #33	ENSEASG00005028275 #34	ENSEASG00005003276 #35	ENSEASG00005005717 #9
Donkey	MODERN SPECIES	23						ENSEASG00005003017 #11	COX20 (ENSEASG00005024069) #12	DESI2 (ENSEASG00005003022) #14	CATSPERE (ENSEASG00005036663) #15	ADSS2 (ENSEASG00005003054) #16	C1orf100 (ENSEASG00005026609) #17	ZBTB18 (ENSEASG00005030332) #18	AKT3 (ENSEASG00005003090) #19	SDCCAG8 (ENSEASG00005003097) #21	ENSEASG00005026305 #22	ENSEASG00005003123 #22	ENSEASG00005035739	PLD5 (ENSEASG00005003142) #23	ENSEASG00005030566 #25	BECN2 (ENSEASG00005003154) #27	EXO1 (ENSEASG00005003159) #28	WDR64 (ENSEASG00005003164) #29	CHML (ENSEASG00005037865)	OPN3 (ENSEASG00005003173) #30	KMO (ENSEASG00005003187) #31	FH (ENSEASG00005003252) #32	RGS7 (ENSEASG00005003257) #33	ENSEASG00005028275 #34	ENSEASG00005003276 #35	ENSEASG00005005717 #9	SMYD3 (ENSEASG00005005726) #7
Horse	MODERN SPECIES	23				ENSECAG00000052008	HNRNPU (ENSECAG00000007955) #11	COX20 (ENSECAG00000008125) #12	DESI2 (ENSECAG00000008142) #14	CATSPERE (ENSECAG00000008228) #15	ENSECAG00000056420	ENSECAG00000041634	ADSS2 (ENSECAG00000010744) #16	C30H1orf100 (ENSECAG00000016894) #17	ZBTB18 (ENSECAG00000033381) #18	AKT3 (ENSECAG00000019722) #19	SDCCAG8 (ENSECAG00000008477) #21	CEP170 (ENSECAG00000012163) #22	ENSECAG00000049767	ENSECAG00000052988	PLD5 (ENSECAG00000015845) #23	ENSECAG00000037253 #25	BECN2 (ENSECAG00000017996) #27	ENSECAG00000047917 #25	EXO1 (ENSECAG00000018322) #28	WDR64 (ENSECAG00000007512) #29	OPN3 (ENSECAG00000014947) #30	CHML (ENSECAG00000049917)	KMO (ENSECAG00000015341) #31	FH (ENSECAG00000020726) #32	ENSECAG00000046999	RGS7 (ENSECAG00000009422) #33	GREM2 (ENSECAG00000003167) #34
Carnivora	ANCESTRAL SPECIES	14	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.b	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00440000039028
Caniformia	ANCESTRAL SPECIES	10	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644
Canidae	ANCESTRAL SPECIES	1	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.d #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00390000009320.eb.a	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.d #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00390000009320.eb.a	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644
Dog	MODERN SPECIES	35	SCCPDH (ENSCAFG00845006130)	CNST (ENSCAFG00845005933)	TFB2M (ENSCAFG00845005847)	SMYD3 (ENSCAFG00845005785) #7	KIF26B (ENSCAFG00845005694) #9	ENSCAFG00845005646 #10	HNRNPU (ENSCAFG00845005509) #11	ENSCAFG00845005435 #12	DESI2 (ENSCAFG00845005415) #14	CATSPERE (ENSCAFG00845005306) #15	ADSS2 (ENSCAFG00845005250) #16	C7H1orf100 (ENSCAFG00845005216) #17	ZBTB18 (ENSCAFG00845004904) #18	AKT3 (ENSCAFG00845004858) #19	SDCCAG8 (ENSCAFG00845004779) #21	CEP170 (ENSCAFG00845004652) #22	ENSCAFG00845004592	PLD5 (ENSCAFG00845004571) #23	MAP1LC3C (ENSCAFG00845004557) #25	BECN2 (ENSCAFG00845004546) #27	EXO1 (ENSCAFG00845004521) #28	ENSCAFG00845004504	ENSCAFG00845004494	WDR64 (ENSCAFG00845004435) #29	CHML (ENSCAFG00845004391)	OPN3 (ENSCAFG00845004379) #30	KMO (ENSCAFG00845004366) #31	FH (ENSCAFG00845004348) #32	RGS7 (ENSCAFG00845004226) #33	GREM2 (ENSCAFG00845004033) #34	ENSCAFG00845003957 #35
Dingo	MODERN SPECIES	271	SCCPDH (ENSCAFG00020001113)	CNST (ENSCAFG00020001096)	TFB2M (ENSCAFG00020001084)	ENSCAFG00020001053 #7	KIF26B (ENSCAFG00020000955) #9	ENSCAFG00020000931 #10	HNRNPU (ENSCAFG00020000918) #11	COX20 (ENSCAFG00020000902) #12	DESI2 (ENSCAFG00020000895) #14	ENSCAFG00020000834 #15	ADSS2 (ENSCAFG00020000812) #16	C1orf100 (ENSCAFG00020000808) #17	ZBTB18 (ENSCAFG00020000800) #18	AKT3 (ENSCAFG00020000778) #19	SDCCAG8 (ENSCAFG00020000770) #21	CEP170 (ENSCAFG00020000490) #22	ENSCAFG00020000451	PLD5 (ENSCAFG00020000394) #23	MAP1LC3C (ENSCAFG00020000378) #25	ENSCAFG00020000314 #27	EXO1 (ENSCAFG00020000260) #28	ENSCAFG00020000198	ENSCAFG00020023286 #29	ENSCAFG00020023277 #30	ENSCAFG00020023269 #30	KMO (ENSCAFG00020023261) #31	FH (ENSCAFG00020023252) #32	RGS7 (ENSCAFG00020023079) #33	GREM2 (ENSCAFG00020023050) #34	FMN2 (ENSCAFG00020023044) #35	POGK (ENSCAFG00020023039)
Red fox	MODERN SPECIES	45	CNST (ENSVVUG00000000780)	ENSVVUG00000000650	ENSVVUG00000000542 #7	KIF26B (ENSVVUG00000000074) #9	EFCAB2 (ENSVVUG00000026538) #10	HNRNPU (ENSVVUG00000026524) #11	COX20 (ENSVVUG00000026522) #12	DESI2 (ENSVVUG00000026519) #14	CATSPERE (ENSVVUG00000026515) #15	ADSS (ENSVVUG00000026505) #16	C1orf100 (ENSVVUG00000026502) #17	ENSVVUG00000026500	ZBTB18 (ENSVVUG00000026495) #18	AKT3 (ENSVVUG00000026493) #19	SDCCAG8 (ENSVVUG00000026484) #21	CEP170 (ENSVVUG00000026459) #22	PLD5 (ENSVVUG00000026443) #23	MAP1LC3C (ENSVVUG00000026440) #25	EXO1 (ENSVVUG00000026435) #28	ENSVVUG00000026430	WDR64 (ENSVVUG00000026426) #29	OPN3 (ENSVVUG00000026420) #30	KMO (ENSVVUG00000026416) #31	FH (ENSVVUG00000026414) #32	RGS7 (ENSVVUG00000026398) #33	GREM2 (ENSVVUG00000026390) #34	ENSVVUG00000026387	ENSVVUG00000026384	POGK (ENSVVUG00000026381)	TADA1 (ENSVVUG00000026377)	ILDR2 (ENSVVUG00000026374)
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000161606.d	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644
Ursus	ANCESTRAL SPECIES	90	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158.z #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000161606.d	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644
Polar bear	MODERN SPECIES	99	SCCPDH (ENSUMAG00000013328)	ENSUMAG00000013325	TFB2M (ENSUMAG00000013324)	ENSUMAG00000013322	ENSUMAG00000013317 #7	EFCAB2 (ENSUMAG00000013304) #10	HNRNPU (ENSUMAG00000012322) #11	ENSUMAG00000012218 #12	DESI2 (ENSUMAG00000012207) #14	ENSUMAG00000012197 #15	ADSS2 (ENSUMAG00000011932) #16	C1orf100 (ENSUMAG00000011873) #17	ZBTB18 (ENSUMAG00000011860) #18	AKT3 (ENSUMAG00000011832) #19	SDCCAG8 (ENSUMAG00000011811) #21	CEP170 (ENSUMAG00000011791) #22	PLD5 (ENSUMAG00000011776) #23	ENSUMAG00000011763 #25	BECN2 (ENSUMAG00000011758) #27	ENSUMAG00000011753 #25	EXO1 (ENSUMAG00000011743) #28	ENSUMAG00000011733 #29	ENSUMAG00000011692 #29	ENSUMAG00000011686	ENSUMAG00000011682 #30	KMO (ENSUMAG00000011665) #31	FH (ENSUMAG00000011655) #32	RGS7 (ENSUMAG00000011615) #33	ENSUMAG00000011566 #35	POGK (ENSUMAG00000011541)	TADA1 (ENSUMAG00000011525)
American black bear	MODERN SPECIES	264													AKT3 (ENSUAMG00000009488) #19	SDCCAG8 (ENSUAMG00000009489) #21	ENSUAMG00000009490	CEP170 (ENSUAMG00000009492) #22
Giant Panda	MODERN SPECIES	18	CNST (ENSAMEG00000006589)	TFB2M (ENSAMEG00000006593)	SMYD3 (ENSAMEG00000006619) #7	KIF26B (ENSAMEG00000009119) #9	EFCAB2 (ENSAMEG00000009139) #10	HNRNPU (ENSAMEG00000009145) #11	COX20 (ENSAMEG00000026571) #12	DESI2 (ENSAMEG00000027766) #14	CATSPERE (ENSAMEG00000009228) #15	ADSS2 (ENSAMEG00000009234) #16	C1orf100 (ENSAMEG00000009269) #17	ZBTB18 (ENSAMEG00000019750) #18	AKT3 (ENSAMEG00000009273) #19	SDCCAG8 (ENSAMEG00000009331) #21	ENSAMEG00000024848	CEP170 (ENSAMEG00000018213) #22	PLD5 (ENSAMEG00000013913) #23	ENSAMEG00000013919 #25	BECN2 (ENSAMEG00000018816) #27	ENSAMEG00000013927 #25	EXO1 (ENSAMEG00000013934) #28	WDR64 (ENSAMEG00000013942) #29	OPN3 (ENSAMEG00000013961) #30	KMO (ENSAMEG00000013965) #31	FH (ENSAMEG00000013995) #32	RGS7 (ENSAMEG00000014028) #33	GREM2 (ENSAMEG00000030827) #34	ENSAMEG00000030686 #35	ENSAMEG00000014071	ENSAMEG00000000017	MAEL (ENSAMEG00000000018)
Mustelinae	ANCESTRAL SPECIES	88	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661.l #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00440000039028	ENSGT00390000011644	ENSGT00950000183058.A.a
American mink	MODERN SPECIES	43	SCCPDH (ENSNVIG00000003629)	CNST (ENSNVIG00000003578)	TFB2M (ENSNVIG00000003533)	SMYD3 (ENSNVIG00000003474) #7	KIF26B (ENSNVIG00000003416) #9	EFCAB2 (ENSNVIG00000003367) #10	HNRNPU (ENSNVIG00000003228) #11	COX20 (ENSNVIG00000003195) #12	DESI2 (ENSNVIG00000003153) #14	CATSPERE (ENSNVIG00000003022) #15	ADSS2 (ENSNVIG00000003006) #16	C1orf100 (ENSNVIG00000002977) #17	ZBTB18 (ENSNVIG00000002964) #18	AKT3 (ENSNVIG00000002948) #19	SDCCAG8 (ENSNVIG00000002442) #21	CEP170 (ENSNVIG00000002232) #22	PLD5 (ENSNVIG00000002170) #23	MAP1LC3C (ENSNVIG00000002161) #25	BECN2 (ENSNVIG00000002160) #27	EXO1 (ENSNVIG00000002104) #28	WDR64 (ENSNVIG00000002088) #29	CHML (ENSNVIG00000002080)	ENSNVIG00000002073 #30	KMO (ENSNVIG00000002024) #31	FH (ENSNVIG00000002008) #32	ENSNVIG00000001835 #33	GREM2 (ENSNVIG00000001817) #34
Ferret	MODERN SPECIES	217	CNST (ENSMPUG00000015813)	TFB2M (ENSMPUG00000015810)	ENSMPUG00000015808 #7	SMYD3 (ENSMPUG00000015806) #7	KIF26B (ENSMPUG00000015788) #9	EFCAB2 (ENSMPUG00000015784) #10	HNRNPU (ENSMPUG00000015752) #11	ENSMPUG00000015750 #12	DESI2 (ENSMPUG00000015748) #14	CATSPERE (ENSMPUG00000015745) #15	ADSS2 (ENSMPUG00000015741) #16	C1orf100 (ENSMPUG00000015737) #17	ZBTB18 (ENSMPUG00000015734) #18	AKT3 (ENSMPUG00000015730) #19	SDCCAG8 (ENSMPUG00000015725) #21	CEP170 (ENSMPUG00000015723) #22	ENSMPUG00000015722	ENSMPUG00000015721	PLD5 (ENSMPUG00000015720) #23	MAP1LC3C (ENSMPUG00000015717) #25	BECN2 (ENSMPUG00000015713) #27	EXO1 (ENSMPUG00000015709) #28	WDR64 (ENSMPUG00000015708) #29	OPN3 (ENSMPUG00000015703) #30	KMO (ENSMPUG00000015699) #31	FH (ENSMPUG00000015697) #32	RGS7 (ENSMPUG00000015695) #33	ENSMPUG00000015693	GREM2 (ENSMPUG00000015692) #34	ENSMPUG00000015690 #35	POGK (ENSMPUG00000015689)
Felidae	ANCESTRAL SPECIES	11	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.b	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00440000039028	ENSGT00390000011644
Panthera	ANCESTRAL SPECIES	19	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.b	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00440000039028	ENSGT00390000011644
Panthera_a	ANCESTRAL SPECIES	19	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000165019.b	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.c #25	ENSGT00390000008164.d #27	ENSGT00940000161852.d.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00440000039028	ENSGT00390000011644
lion	MODERN SPECIES	17	SCCPDH (ENSPLOG00000007254)	CNST (ENSPLOG00000007297)	TFB2M (ENSPLOG00000007355)	SMYD3 (ENSPLOG00000007373) #7	KIF26B (ENSPLOG00000007502) #9	EFCAB2 (ENSPLOG00000007794) #10	HNRNPU (ENSPLOG00000007884) #11	ENSPLOG00000008076 #12	DESI2 (ENSPLOG00000008117) #14	CATSPERE (ENSPLOG00000008156) #15	ADSS2 (ENSPLOG00000008393) #16	C1orf100 (ENSPLOG00000008471) #17	ZBTB18 (ENSPLOG00000008563) #18	AKT3 (ENSPLOG00000008604) #19	SDCCAG8 (ENSPLOG00000008743) #21	CEP170 (ENSPLOG00000008822) #22	PLD5 (ENSPLOG00000008930) #23	ENSPLOG00000009034 #25	BECN2 (ENSPLOG00000009097) #27	ENSPLOG00000009175 #25	EXO1 (ENSPLOG00000009218) #28	WDR64 (ENSPLOG00000009316) #29	OPN3 (ENSPLOG00000009576) #30	KMO (ENSPLOG00000009633) #31	FH (ENSPLOG00000009935) #32	RGS7 (ENSPLOG00000010068) #33	ENSPLOG00000010413	GREM2 (ENSPLOG00000010441) #34	ENSPLOG00000010460 #35	ENSPLOG00000010545	POGK (ENSPLOG00000010580)
leopard	MODERN SPECIES	4	CNST (ENSPPRG00000008188)	TFB2M (ENSPPRG00000007350)	SMYD3 (ENSPPRG00000007149) #7	KIF26B (ENSPPRG00000005611) #9	ENSPPRG00000005048	EFCAB2 (ENSPPRG00000003970) #10	HNRNPU (ENSPPRG00000002662) #11	ENSPPRG00000016002 #12	DESI2 (ENSPPRG00000015454) #14	CATSPERE (ENSPPRG00000013157) #15	ADSS2 (ENSPPRG00000009968) #16	C1orf100 (ENSPPRG00000009331) #17	ZBTB18 (ENSPPRG00000009151) #18	AKT3 (ENSPPRG00000008984) #19	SDCCAG8 (ENSPPRG00000006575) #21	CEP170 (ENSPPRG00000005786) #22	PLD5 (ENSPPRG00000004006) #23	ENSPPRG00000003284 #25	ENSPPRG00000002695 #25	EXO1 (ENSPPRG00000002261) #28	WDR64 (ENSPPRG00000000202) #29	OPN3 (ENSPPRG00000016394) #30	KMO (ENSPPRG00000015898) #31	FH (ENSPPRG00000012319) #32	RGS7 (ENSPPRG00000011889) #33	ENSPPRG00000009269	GREM2 (ENSPPRG00000018431) #34	FMN2 (ENSPPRG00000007138) #35	POGK (ENSPPRG00000005433)	TADA1 (ENSPPRG00000004853)	ILDR2 (ENSPPRG00000004118)
Tiger	MODERN SPECIES	95			SMYD3 (ENSPTIG00000017118) #7	KIF26B (ENSPTIG00000017769) #9	ENSPTIG00000018837	EFCAB2 (ENSPTIG00000019824) #10	HNRNPU (ENSPTIG00000020150) #11	COX20 (ENSPTIG00000011303) #12	DESI2 (ENSPTIG00000011692) #14	CATSPERE (ENSPTIG00000013424) #15	ADSS2 (ENSPTIG00000018415) #16	C1orf100 (ENSPTIG00000019529) #17	ZBTB18 (ENSPTIG00000020181) #18	AKT3 (ENSPTIG00000021068) #19	SDCCAG8 (ENSPTIG00000008829) #21	CEP170 (ENSPTIG00000011961) #22	PLD5 (ENSPTIG00000013519) #23	MAP1LC3C (ENSPTIG00000015165) #25	EXO1 (ENSPTIG00000015769) #28	WDR64 (ENSPTIG00000018586) #29	OPN3 (ENSPTIG00000007030) #30	KMO (ENSPTIG00000007560) #31	FH (ENSPTIG00000012588) #32	RGS7 (ENSPTIG00000014826) #33	GREM2 (ENSPTIG00000019773) #34	ENSPTIG00000020273 #35	POGK (ENSPTIG00000005898)	TADA1 (ENSPTIG00000008050)	ILDR2 (ENSPTIG00000008765)	MAEL (ENSPTIG00000011034)	GPA33 (ENSPTIG00000013953)
Cat	MODERN SPECIES	248	CNST (ENSFCAG00000028075)	TFB2M (ENSFCAG00000021951)	SMYD3 (ENSFCAG00000038120) #7	KIF26B (ENSFCAG00000022128) #9	EFCAB2 (ENSFCAG00000029971) #10	HNRNPU (ENSFCAG00000002156) #11	COX20 (ENSFCAG00000036373) #12	ENSFCAG00000049403	DESI2 (ENSFCAG00000026628) #14	CATSPERE (ENSFCAG00000042283) #15	ADSS2 (ENSFCAG00000025698) #16	C1orf100 (ENSFCAG00000041166) #17	ZBTB18 (ENSFCAG00000043987) #18	AKT3 (ENSFCAG00000003700) #19	SDCCAG8 (ENSFCAG00000038761) #21	CEP170 (ENSFCAG00000026540) #22	PLD5 (ENSFCAG00000009424) #23	ENSFCAG00000051650	ENSFCAG00000052716	ENSFCAG00000040996 #25	ENSFCAG00000013340 #27	ENSFCAG00000036292 #25	EXO1 (ENSFCAG00000013339) #28	WDR64 (ENSFCAG00000013338) #29	OPN3 (ENSFCAG00000034971) #30	KMO (ENSFCAG00000004150) #31	FH (ENSFCAG00000005490) #32	RGS7 (ENSFCAG00000001325) #33	ENSFCAG00000047292	GREM2 (ENSFCAG00000043713) #34	FMN2 (ENSFCAG00000029917) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155103.a.b #22
Common shrew	MODERN SPECIES	3079																CEP170 (ENSSARG00000006759) #22
Atlantogenata	ANCESTRAL SPECIES	44	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT00950000182994.A.n.b	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324
Xenarthra	ANCESTRAL SPECIES	1432																ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00510000047676 #28
Sloth	MODERN SPECIES	3582																CEP170 (ENSCHOG00000000806) #22
Armadillo	MODERN SPECIES	2015																CEP170 (ENSDNOG00000024805) #22	PLD5 (ENSDNOG00000010763) #23	EXO1 (ENSDNOG00000004289) #28
Afrotheria	ANCESTRAL SPECIES	47	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824
Afrotheria_a	DUPLICATION
Afrotheria_a	ANCESTRAL SPECIES	48	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00730000111198 #21	ENSGT00940000155103.a.b.`b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00390000008164.d #27	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d	ENSGT00420000029824
Elephant	MODERN SPECIES	126	SCCPDH (ENSLAFG00000001357)	CNST (ENSLAFG00000016089)	TFB2M (ENSLAFG00000015061)	ENSLAFG00000009695 #7	ENSLAFG00000027832	KIF26B (ENSLAFG00000016491) #9	EFCAB2 (ENSLAFG00000004376) #10	HNRNPU (ENSLAFG00000021377) #11	DESI2 (ENSLAFG00000005264) #14	CATSPERE (ENSLAFG00000015299) #15	ENSLAFG00000002097 #16	C1orf100 (ENSLAFG00000025946) #17	ZBTB18 (ENSLAFG00000002879) #18	AKT3 (ENSLAFG00000016937) #19	ENSLAFG00000016926 #21	CEP170 (ENSLAFG00000004889) #22	ENSLAFG00000012274	PLD5 (ENSLAFG00000015925) #23	ENSLAFG00000015922 #25	BECN2 (ENSLAFG00000001543) #27	ENSLAFG00000030313 #25	EXO1 (ENSLAFG00000001542) #28	WDR64 (ENSLAFG00000009998) #29	OPN3 (ENSLAFG00000009994) #30	KMO (ENSLAFG00000009991) #31	FH (ENSLAFG00000005727) #32	RGS7 (ENSLAFG00000009882) #33	GREM2 (ENSLAFG00000031925) #34	ENSLAFG00000001045	CHRM3 (ENSLAFG00000010801)	ZP4 (ENSLAFG00000004018)
Hyrax	MODERN SPECIES	4030																ENSPCAG00000002264 #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00940000155103.a.b.ab #22
Hyrax	MODERN SPECIES	3246																ENSPCAG00000002080 #22
Tenrec	MODERN SPECIES	3929																CEP170 (ENSETEG00000000476) #22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00910000148060	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766 #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852 #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000000747 #31	ENSGT00950000183122.A #32	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000161324	ENSGT00940000154906.C.d
koala	DUPLICATION
koala	MODERN SPECIES	12	ENSPCIG00000003253 #7	KIF26B (ENSPCIG00000016690) #9	EFCAB2 (ENSPCIG00000013082) #10	HNRNPU (ENSPCIG00000008657) #11	COX20 (ENSPCIG00000035475) #12	ENSPCIG00000035729	DESI2 (ENSPCIG00000008632) #14	ENSPCIG00000032232 #15	ADSS2 (ENSPCIG00000017074) #16	ENSPCIG00000017075	ENSPCIG00000017077 #17	ZBTB18 (ENSPCIG00000006967) #18	AKT3 (ENSPCIG00000006957) #19	ENSPCIG00000006946	ENSPCIG00000037006 #22	ENSPCIG00000022932 #22	PLD5 (ENSPCIG00000000048) #23	EXO1 (ENSPCIG00000000052) #28	WDR64 (ENSPCIG00000000053) #29	OPN3 (ENSPCIG00000000054) #30	KMO (ENSPCIG00000000055) #31	FH (ENSPCIG00000000056) #32	RGS7 (ENSPCIG00000003865) #33	GREM2 (ENSPCIG00000030902) #34	ENSPCIG00000030768 #35	ENSPCIG00000035163 #37	CHRM3 (ENSPCIG00000000352)
koala	MODERN SPECIES	12	ENSPCIG00000003263	ENSPCIG00000003253 #7	KIF26B (ENSPCIG00000016690) #9	EFCAB2 (ENSPCIG00000013082) #10	HNRNPU (ENSPCIG00000008657) #11	COX20 (ENSPCIG00000035475) #12	ENSPCIG00000035729	DESI2 (ENSPCIG00000008632) #14	ENSPCIG00000032232 #15	ADSS2 (ENSPCIG00000017074) #16	ENSPCIG00000017075	ENSPCIG00000017077 #17	ZBTB18 (ENSPCIG00000006967) #18	AKT3 (ENSPCIG00000006957) #19	ENSPCIG00000006946	ENSPCIG00000037006 #22	ENSPCIG00000022932 #22	PLD5 (ENSPCIG00000000048) #23	EXO1 (ENSPCIG00000000052) #28	WDR64 (ENSPCIG00000000053) #29	OPN3 (ENSPCIG00000000054) #30	KMO (ENSPCIG00000000055) #31	FH (ENSPCIG00000000056) #32	RGS7 (ENSPCIG00000003865) #33	GREM2 (ENSPCIG00000030902) #34	ENSPCIG00000030768 #35	ENSPCIG00000035163 #37	CHRM3 (ENSPCIG00000000352)
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1035	ENSVURG00010015938	ENSVURG00010015925	ENSVURG00010015915	ENSVURG00010015901	ENSVURG00010015887	ENSVURG00010015854 #9	ENSVURG00010015829 #10	ENSVURG00010015813 #11	ENSVURG00010015810 #12	ENSVURG00010015784 #14	ENSVURG00010015758 #16	ENSVURG00010015741 #18	ENSVURG00010015721 #19	ENSVURG00010015704	ENSVURG00010015668	ENSVURG00010015620 #22	ENSVURG00010015591 #23	ENSVURG00010015571 #25	ENSVURG00010015550 #28	ENSVURG00010015501 #29	ENSVURG00010015486 #30	ENSVURG00010015474 #30	ENSVURG00010015455 #31	ENSVURG00010015445 #32	ENSVURG00010015280 #33	ENSVURG00010015242 #34	ENSVURG00010015237	ENSVURG00010015215	ENSVURG00010015157	ENSVURG00010015117	ENSVURG00010015062
Common wonbat	MODERN SPECIES	1035	ENSVURG00010008267	ENSVURG00010008263	ENSVURG00010008261	ENSVURG00010008148 #7	ENSVURG00010008115 #9	ENSVURG00010008004 #10	ENSVURG00010007907 #11	ENSVURG00010007891 #12	ENSVURG00010007884	ENSVURG00010007837 #14	ENSVURG00010007786 #16	ENSVURG00010007765 #18	ENSVURG00010007733 #19	ENSVURG00010007701	ENSVURG00010007635	ENSVURG00010007584 #22	ENSVURG00010007551 #23	ENSVURG00010007529 #25	ENSVURG00010007516 #28	ENSVURG00010007423 #29	ENSVURG00010007372 #30	ENSVURG00010007345 #31	ENSVURG00010007331 #32	ENSVURG00010007185 #33	ENSVURG00010007138 #34	ENSVURG00010007131 #35	ENSVURG00010007108	ENSVURG00010007091 #37	ENSVURG00010007070	ENSVURG00010007049	ENSVURG00010006995
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000010044	ENSSHAG00000030450 #7	KIF26B (ENSSHAG00000015160) #9	EFCAB2 (ENSSHAG00000028679) #10	HNRNPU (ENSSHAG00000025408) #11	COX20 (ENSSHAG00000027143) #12	DESI2 (ENSSHAG00000023757) #14	ENSSHAG00000032055 #15	ENSSHAG00000004405 #15	ADSS2 (ENSSHAG00000000865) #16	ENSSHAG00000002954 #17	ENSSHAG00000022540	ZBTB18 (ENSSHAG00000025944) #18	AKT3 (ENSSHAG00000012342) #19	ENSSHAG00000013573	CEP170 (ENSSHAG00000014838) #22	PLD5 (ENSSHAG00000008868) #23	MAP1LC3C (ENSSHAG00000027962) #25	EXO1 (ENSSHAG00000010165) #28	WDR64 (ENSSHAG00000010684) #29	OPN3 (ENSSHAG00000030261) #30	KMO (ENSSHAG00000012201) #31	FH (ENSSHAG00000012494) #32	ENSSHAG00000029198	RGS7 (ENSSHAG00000008644) #33	GREM2 (ENSSHAG00000012022) #34	ENSSHAG00000024333	FMN2 (ENSSHAG00000020854) #35	CHRM3 (ENSSHAG00000014441)	ENSSHAG00000009185	RYR2 (ENSSHAG00000009656)
Opossum	MODERN SPECIES	1	ENSMODG00000040525	ENSMODG00000006404 #7	KIF26B (ENSMODG00000006420) #9	ENSMODG00000041630 #10	HNRNPU (ENSMODG00000006515) #11	COX20 (ENSMODG00000024669) #12	DESI2 (ENSMODG00000006533) #14	ENSMODG00000024668 #15	ENSMODG00000041647	ENSMODG00000006559 #16	ENSMODG00000006566 #17	ZBTB18 (ENSMODG00000006570) #18	ENSMODG00000041193	AKT3 (ENSMODG00000006626) #19	ENSMODG00000006642	CEP170 (ENSMODG00000006701) #22	ENSMODG00000051185	ENSMODG00000006765	PLD5 (ENSMODG00000006817) #23	MAP1LC3C (ENSMODG00000006842) #25	EXO1 (ENSMODG00000006877) #28	WDR64 (ENSMODG00000006929) #29	OPN3 (ENSMODG00000006943) #30	KMO (ENSMODG00000006989) #31	FH (ENSMODG00000007014) #32	ENSMODG00000007027	RGS7 (ENSMODG00000007084) #33	GREM2 (ENSMODG00000024656) #34	FMN2 (ENSMODG00000007102) #35	CHRM3 (ENSMODG00000024652)	ENSMODG00000042871
Platypus	MODERN SPECIES	10	AHCTF1 (ENSOANG00000010242)	SCCPDH (ENSOANG00000010244)	CNST (ENSOANG00000010245)	ENSOANG00000041467	SMYD3 (ENSOANG00000019760) #7	KIF26B (ENSOANG00000010247) #9	ENSOANG00000049283 #10	HNRNPU (ENSOANG00000010249) #11	COX20 (ENSOANG00000049445) #12	DESI2 (ENSOANG00000036528) #14	ADSS2 (ENSOANG00000010254) #16	ENSOANG00000010256 #17	ZBTB18 (ENSOANG00000047323) #18	AKT3 (ENSOANG00000010258) #19	ENSOANG00000010263	CEP170 (ENSOANG00000010265) #22	ENSOANG00000039486 #23	EXO1 (ENSOANG00000043018) #28	WDR64 (ENSOANG00000010268) #29	KMO (ENSOANG00000010271) #31	FH (ENSOANG00000010272) #32	PIGM (ENSOANG00000040171)	ENSOANG00000010273	RGS7 (ENSOANG00000010274) #33	GREM2 (ENSOANG00000010275) #34	ENSOANG00000045178	ENSOANG00000042159	CHRM3 (ENSOANG00000041832)	RYR2 (ENSOANG00000010281)	MTR (ENSOANG00000048280)	ACTN2 (ENSOANG00000009397)
Sauria	ANCESTRAL SPECIES	1	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
Lepidosauria	DUPLICATION
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000155103.a.b.a #22
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1838													ZBTB18 (ENSSPUG00000013479) #18	AKT3 (ENSSPUG00000013463) #19	ENSSPUG00000013443	ENSSPUG00000013431 #22	ENSSPUG00000013423 #22	ENSSPUG00000013417 #22
tuatara	MODERN SPECIES	1838											ZBTB18 (ENSSPUG00000013479) #18	AKT3 (ENSSPUG00000013463) #19	ENSSPUG00000013443	ENSSPUG00000013431 #22	ENSSPUG00000013423 #22	ENSSPUG00000013417 #22
tuatara	MODERN SPECIES	1838												ZBTB18 (ENSSPUG00000013479) #18	AKT3 (ENSSPUG00000013463) #19	ENSSPUG00000013443	ENSSPUG00000013431 #22	ENSSPUG00000013423 #22	ENSSPUG00000013417 #22
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000155103.a.b.a #22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000155103.a.b.a #22
Lizard	MODERN SPECIES	899	KIF26B (ENSACAG00000011771) #9	ENSACAG00000043643	EFCAB2 (ENSACAG00000040747) #10	ENSACAG00000037868 #11	HNRNPU (ENSACAG00000004511) #11	COX20 (ENSACAG00000043840) #12	DESI2 (ENSACAG00000004473) #14	ADSS2 (ENSACAG00000004299) #16	ENSACAG00000039315	ENSACAG00000043662	ENSACAG00000039475	ZBTB18 (ENSACAG00000004296) #18	ENSACAG00000034668	AKT3 (ENSACAG00000006720) #19	ENSACAG00000006805	ENSACAG00000039879 #22	ENSACAG00000041458	ENSACAG00000005222 #22	ENSACAG00000040328
Lepidosauria	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
Episquamata	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000006577	ENSPMRG00000006562 #11	ENSPMRG00000006536 #10	KIF26B (ENSPMRG00000006520) #9	ENSPMRG00000006500 #10	ENSPMRG00000006489	ENSPMRG00000006472 #11	COX20 (ENSPMRG00000006456) #12	DESI2 (ENSPMRG00000006448) #14	CATSPERE (ENSPMRG00000006426) #15	ADSS2 (ENSPMRG00000006407) #16	ENSPMRG00000006400	ZBTB18 (ENSPMRG00000006392) #18	AKT3 (ENSPMRG00000006354) #19	ENSPMRG00000006307	CEP170 (ENSPMRG00000006264) #22	PLD5 (ENSPMRG00000006234) #23	MAP1LC3C (ENSPMRG00000006225) #25	ENSPMRG00000006221	EXO1 (ENSPMRG00000006169) #28	WDR64 (ENSPMRG00000006118) #29	OPN3 (ENSPMRG00000006099) #30	RGS7 (ENSPMRG00000006063) #33	GREM2 (ENSPMRG00000006041) #34	FMN2 (ENSPMRG00000005976) #35	CHRM3 (ENSPMRG00000005958)	ENSPMRG00000005950	RYR2 (ENSPMRG00000005166)	MTR (ENSPMRG00000004938)	ACTN2 (ENSPMRG00000004915)	HEATR1 (ENSPMRG00000004862)
Argentine black and white tegu	MODERN SPECIES	2	TFB2M (ENSSMRG00000010075)	ENSSMRG00000010081 #7	ENSSMRG00000010087	ENSSMRG00000010103 #7	KIF26B (ENSSMRG00000010140) #9	ENSSMRG00000010142 #10	ENSSMRG00000010143	HNRNPU (ENSSMRG00000010145) #11	ENSSMRG00000010148	DESI2 (ENSSMRG00000010150) #14	ADSS2 (ENSSMRG00000010155) #16	ENSSMRG00000010156	ZBTB18 (ENSSMRG00000010157) #18	AKT3 (ENSSMRG00000010166) #19	ENSSMRG00000010174	CEP170 (ENSSMRG00000010175) #22	PLD5 (ENSSMRG00000010182) #23	MAP1LC3C (ENSSMRG00000010184) #25	EXO1 (ENSSMRG00000010199) #28	WDR64 (ENSSMRG00000010200) #29	ENSSMRG00000010201	OPN3 (ENSSMRG00000010202) #30	PIGM (ENSSMRG00000010223)	RGS7 (ENSSMRG00000010248) #33	GREM2 (ENSSMRG00000010254) #34	FMN2 (ENSSMRG00000010270) #35	CHRM3 (ENSSMRG00000010271)	ENSSMRG00000010277	RYR2 (ENSSMRG00000010394)	MTR (ENSSMRG00000021868)	ACTN2 (ENSSMRG00000021869)
Toxicofera	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Elapidae	ANCESTRAL SPECIES		ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00940000168267	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00940000168267	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a.a	ENSGT00390000015845	ENSGT00940000155727	ENSGT00940000165200
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00940000168267	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a.a	ENSGT00390000015845	ENSGT00940000155727	ENSGT00940000165200
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	28	TFB2M (ENSNSUG00000016750)	ENSNSUG00000016751 #7	ENSNSUG00000016752	KIF26B (ENSNSUG00000016753) #9	ENSNSUG00000016754	EFCAB2 (ENSNSUG00000016755) #10	HNRNPU (ENSNSUG00000016756) #11	ENSNSUG00000016757	DESI2 (ENSNSUG00000016758) #14	ADSS2 (ENSNSUG00000016760) #16	ZBTB18 (ENSNSUG00000016761) #18	AKT3 (ENSNSUG00000016762) #19	ENSNSUG00000016876	ENSNSUG00000016877 #22	ENSNSUG00000016878 #22	ENSNSUG00000016879 #22	ENSNSUG00000016880 #23	ENSNSUG00000016882 #23	MAP1LC3C (ENSNSUG00000016883) #25	EXO1 (ENSNSUG00000016884) #28	ENSNSUG00000016885 #29	ENSNSUG00000016886 #29	OPN3 (ENSNSUG00000016887) #30	RGS7 (ENSNSUG00000016888) #33	GREM2 (ENSNSUG00000016889) #34	ENSNSUG00000016890	CHRM3 (ENSNSUG00000016891)	RYR2 (ENSNSUG00000016892)	MTR (ENSNSUG00000016909)	ACTN2 (ENSNSUG00000017933)	ENSNSUG00000017934
Mainland tiger snake	MODERN SPECIES	28	SCCPDH (ENSNSUG00000016671)	CNST (ENSNSUG00000016673)	TFB2M (ENSNSUG00000016750)	ENSNSUG00000016751 #7	ENSNSUG00000016752	KIF26B (ENSNSUG00000016753) #9	ENSNSUG00000016754	EFCAB2 (ENSNSUG00000016755) #10	HNRNPU (ENSNSUG00000016756) #11	ENSNSUG00000016757	DESI2 (ENSNSUG00000016758) #14	ADSS2 (ENSNSUG00000016760) #16	ZBTB18 (ENSNSUG00000016761) #18	AKT3 (ENSNSUG00000016762) #19	ENSNSUG00000016876	ENSNSUG00000016877 #22	ENSNSUG00000016878 #22	ENSNSUG00000016879 #22	ENSNSUG00000016880 #23	ENSNSUG00000016882 #23	MAP1LC3C (ENSNSUG00000016883) #25	EXO1 (ENSNSUG00000016884) #28	ENSNSUG00000016885 #29	ENSNSUG00000016886 #29	OPN3 (ENSNSUG00000016887) #30	RGS7 (ENSNSUG00000016888) #33	GREM2 (ENSNSUG00000016889) #34	ENSNSUG00000016890	CHRM3 (ENSNSUG00000016891)	RYR2 (ENSNSUG00000016892)	MTR (ENSNSUG00000016909)
Mainland tiger snake	MODERN SPECIES	28	CNST (ENSNSUG00000016673)	TFB2M (ENSNSUG00000016750)	ENSNSUG00000016751 #7	ENSNSUG00000016752	KIF26B (ENSNSUG00000016753) #9	ENSNSUG00000016754	EFCAB2 (ENSNSUG00000016755) #10	HNRNPU (ENSNSUG00000016756) #11	ENSNSUG00000016757	DESI2 (ENSNSUG00000016758) #14	ADSS2 (ENSNSUG00000016760) #16	ZBTB18 (ENSNSUG00000016761) #18	AKT3 (ENSNSUG00000016762) #19	ENSNSUG00000016876	ENSNSUG00000016877 #22	ENSNSUG00000016878 #22	ENSNSUG00000016879 #22	ENSNSUG00000016880 #23	ENSNSUG00000016882 #23	MAP1LC3C (ENSNSUG00000016883) #25	EXO1 (ENSNSUG00000016884) #28	ENSNSUG00000016885 #29	ENSNSUG00000016886 #29	OPN3 (ENSNSUG00000016887) #30	RGS7 (ENSNSUG00000016888) #33	GREM2 (ENSNSUG00000016889) #34	ENSNSUG00000016890	CHRM3 (ENSNSUG00000016891)	RYR2 (ENSNSUG00000016892)	MTR (ENSNSUG00000016909)	ACTN2 (ENSNSUG00000017933)
Eastern brown snake	MODERN SPECIES	26												ADSS2 (ENSPTXG00000003073) #16	ZBTB18 (ENSPTXG00000003072) #18	AKT3 (ENSPTXG00000003071) #19	ENSPTXG00000003069	CEP170 (ENSPTXG00000003025) #22	ENSPTXG00000003018 #23	ENSPTXG00000003014 #23	MAP1LC3C (ENSPTXG00000003012) #25	EXO1 (ENSPTXG00000003000) #28	WDR64 (ENSPTXG00000002995) #29	OPN3 (ENSPTXG00000002985) #30	RGS7 (ENSPTXG00000002983) #33	ENSPTXG00000002982	GREM2 (ENSPTXG00000002980) #34	ENSPTXG00000002977 #35	CHRM3 (ENSPTXG00000002975)	RYR2 (ENSPTXG00000002954)	MTR (ENSPTXG00000002797)	ACTN2 (ENSPTXG00000001983)	HEATR1 (ENSPTXG00000001976)
Blue-lipped sea krait	MODERN SPECIES	4882																CEP170 (ENSLLTG00000003088) #22
Indian cobra	MODERN SPECIES		ENSNNAG00000000689	SCCPDH (ENSNNAG00000000723)	CNST (ENSNNAG00000000744)	TFB2M (ENSNNAG00000000762)	ENSNNAG00000000776 #7	KIF26B (ENSNNAG00000000789) #9	ENSNNAG00000000799	EFCAB2 (ENSNNAG00000000820) #10	HNRNPU (ENSNNAG00000000843) #11	DESI2 (ENSNNAG00000000863) #14	CATSPERE (ENSNNAG00000000905) #15	ADSS2 (ENSNNAG00000000962) #16	ZBTB18 (ENSNNAG00000001001) #18	AKT3 (ENSNNAG00000001025) #19	ENSNNAG00000001076	CEP170 (ENSNNAG00000001186) #22	ENSNNAG00000001285 #23	ENSNNAG00000001291 #23	ENSNNAG00000001300 #23	MAP1LC3C (ENSNNAG00000001315) #25	EXO1 (ENSNNAG00000001347) #28	WDR64 (ENSNNAG00000001381) #29	OPN3 (ENSNNAG00000001411) #30	RGS7 (ENSNNAG00000001452) #33	GREM2 (ENSNNAG00000001521) #34	ENSNNAG00000001538	ENSNNAG00000001549	ENSNNAG00000001564	CHRM3 (ENSNNAG00000001572)	RYR2 (ENSNNAG00000001714)	MTR (ENSNNAG00000002067)
Lizard	MODERN SPECIES	899	EFCAB2 (ENSACAG00000040747) #10	ENSACAG00000037868 #11	HNRNPU (ENSACAG00000004511) #11	COX20 (ENSACAG00000043840) #12	DESI2 (ENSACAG00000004473) #14	ADSS2 (ENSACAG00000004299) #16	ENSACAG00000039315	ENSACAG00000043662	ENSACAG00000039475	ZBTB18 (ENSACAG00000004296) #18	ENSACAG00000034668	AKT3 (ENSACAG00000006720) #19	ENSACAG00000006805	ENSACAG00000039879 #22	ENSACAG00000041458	ENSACAG00000005222 #22	ENSACAG00000040328
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1576											ARL5B (ENSSPUG00000014073)	NSUN6 (ENSSPUG00000014085)	ENSSPUG00000014105	CACNB2 (ENSSPUG00000014114)	ENSSPUG00000014130 #22	ENSSPUG00000014148 #22	ENSSPUG00000014166 #23	MAP1LC3C (ENSSPUG00000014173) #25	EXO1 (ENSSPUG00000014184) #28
tuatara	MODERN SPECIES	1576												ARL5B (ENSSPUG00000014073)	NSUN6 (ENSSPUG00000014085)	ENSSPUG00000014105	CACNB2 (ENSSPUG00000014114)	ENSSPUG00000014130 #22	ENSSPUG00000014148 #22	ENSSPUG00000014166 #23	MAP1LC3C (ENSSPUG00000014173) #25	EXO1 (ENSSPUG00000014184) #28
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT01100000263477.B	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT01100000263477.B	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a
Australian saltwater crocodile	MODERN SPECIES	60	CNST (ENSCPRG00005013810)	TFB2M (ENSCPRG00005013817)	ENSCPRG00005013821 #7	ENSCPRG00005013850 #7	KIF26B (ENSCPRG00005013894) #9	EFCAB2 (ENSCPRG00005013903) #10	HNRNPU (ENSCPRG00005013940) #11	COX20 (ENSCPRG00005014229) #12	ENSCPRG00005014235	DESI2 (ENSCPRG00005014238) #14	ADSS2 (ENSCPRG00005014241) #16	C1orf100 (ENSCPRG00005014243) #17	ZBTB18 (ENSCPRG00005014249) #18	AKT3 (ENSCPRG00005014254) #19	ENSCPRG00005014262	CEP170 (ENSCPRG00005014277) #22	ENSCPRG00005014303	PLD5 (ENSCPRG00005014316) #23	MAP1LC3C (ENSCPRG00005014326) #25	EXO1 (ENSCPRG00005014340) #28	WDR64 (ENSCPRG00005014354) #29	OPN3 (ENSCPRG00005014373) #30	PIGM (ENSCPRG00005014387)	RGS7 (ENSCPRG00005014452) #33	GREM2 (ENSCPRG00005014565) #34	ENSCPRG00005014566 #35	ENSCPRG00005014577	CHRM3 (ENSCPRG00005014581)	RYR2 (ENSCPRG00005014790)	MTR (ENSCPRG00005016487)	ACTN2 (ENSCPRG00005016507)
Aves	ANCESTRAL SPECIES	12	ENSGT00390000005861	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
African ostrich	MODERN SPECIES	935												ZBTB18 (ENSSCUG00000017992) #18	ENSSCUG00000017991	AKT3 (ENSSCUG00000017989) #19	ENSSCUG00000017982	CEP170 (ENSSCUG00000017975) #22
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00960000189424	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00960000189749	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00390000005861	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00960000189424	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00390000018900	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b	ENSGT01020000230401.a.a.a.j	ENSGT00940000157927	ENSGT00940000159120	ENSGT00390000013762.b.a	ENSGT00940000159341	ENSGT00940000158246	ENSGT00400000022349
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00390000018900	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b	ENSGT01020000230401.a.a.a.j	ENSGT00940000157927	ENSGT00940000159120	ENSGT00390000013762.b.a	ENSGT00940000159341	ENSGT00940000158246	ENSGT00400000022349
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00390000018900.j	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b	ENSGT01020000230401.a.a.a.j	ENSGT00940000157927	ENSGT00940000159120	ENSGT00390000013762.b.a	ENSGT00940000159341	ENSGT00940000158246	ENSGT00400000022349
Medium ground finch	MODERN SPECIES	2	AHCTF1 (ENSGFOG00000000080)	SCCPDH (ENSGFOG00000000059)	CNST (ENSGFOG00000000055)	ENSGFOG00000000051	ENSGFOG00000000048 #7	ENSGFOG00000000043 #7	KIF26B (ENSGFOG00000000039) #9	EFCAB2 (ENSGFOG00000000037) #10	HNRNPU (ENSGFOG00000009639) #11	COX20 (ENSGFOG00000009494) #12	DESI2 (ENSGFOG00000009482) #14	ADSS2 (ENSGFOG00000009201) #16	ZBTB18 (ENSGFOG00000009192) #18	AKT3 (ENSGFOG00000009182) #19	ENSGFOG00000009156	CEP170 (ENSGFOG00000009123) #22	PLD5 (ENSGFOG00000009114) #23	MRPS18A (ENSGFOG00000009108)	RSPH9 (ENSGFOG00000009102)	VEGFA (ENSGFOG00000008871)	MRPL14 (ENSGFOG00000008855)	TMEM63B (ENSGFOG00000008835)	CAPN11 (ENSGFOG00000008822)	SLC29A1 (ENSGFOG00000008809)	HSP90AB1 (ENSGFOG00000008726)	SLC35B2 (ENSGFOG00000008713)	NFKBIE (ENSGFOG00000008595)	TMEM151B (ENSGFOG00000008584)	TCTE1 (ENSGFOG00000008559)	AARS2 (ENSGFOG00000008529)	RNF8 (ENSGFOG00000008519)
Passeroidea	ANCESTRAL SPECIES		ENSGT00390000018900.j.b	ENSGT00390000018900.j.a	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00390000018686	ENSGT00390000006493	ENSGT00940000157284	ENSGT00390000001121	ENSGT00940000157084	ENSGT00940000158672	ENSGT00950000182898.a.a.a.a.b	ENSGT01020000230401.a.a.a.j	ENSGT00940000157927	ENSGT00940000159120	ENSGT00390000013762.b.a	ENSGT00940000159341	ENSGT00940000158246	ENSGT00400000022349
Zebra finch	MODERN SPECIES	23	ENSTGUG00000009224	ENSTGUG00000009240	ENSTGUG00000009271	CNST (ENSTGUG00000008403)	TFB2M (ENSTGUG00000008396)	ENSTGUG00000021382 #7	ENSTGUG00000029207 #7	KIF26B (ENSTGUG00000008377) #9	EFCAB2 (ENSTGUG00000019448) #10	HNRNPU (ENSTGUG00000008309) #11	DESI2 (ENSTGUG00000024880) #14	ADSS2 (ENSTGUG00000008252) #16	ZBTB18 (ENSTGUG00000008247) #18	AKT3 (ENSTGUG00000008212) #19	ENSTGUG00000008192	CEP170 (ENSTGUG00000008164) #22	PLD5 (ENSTGUG00000008155) #23	RSPH9 (ENSTGUG00000008150)	MRPS18A (ENSTGUG00000021976)	VEGFA (ENSTGUG00000008137)	MRPL14 (ENSTGUG00000008134)	TMEM63B (ENSTGUG00000008105)	CAPN11 (ENSTGUG00000008009)	SLC29A1 (ENSTGUG00000007972)	ENSTGUG00000026786	ENSTGUG00000026910	SLC35B2 (ENSTGUG00000007969)	TMEM151B (ENSTGUG00000007960)	TCTE1 (ENSTGUG00000007947)	AARS2 (ENSTGUG00000007880)	RNF8 (ENSTGUG00000018486)
Common canary	MODERN SPECIES	1	ENSSCAG00000012619	SCCPDH (ENSSCAG00000012649)	CNST (ENSSCAG00000012662)	ENSSCAG00000012664	ENSSCAG00000012669 #7	ENSSCAG00000012675 #7	KIF26B (ENSSCAG00000012689) #9	EFCAB2 (ENSSCAG00000012708) #10	HNRNPU (ENSSCAG00000012822) #11	COX20 (ENSSCAG00000013270) #12	DESI2 (ENSSCAG00000013277) #14	ADSS2 (ENSSCAG00000013319) #16	ZBTB18 (ENSSCAG00000013375) #18	AKT3 (ENSSCAG00000013390) #19	ENSSCAG00000013409	CEP170 (ENSSCAG00000013445) #22	PLD5 (ENSSCAG00000013478) #23	RSPH9 (ENSSCAG00000013509)	MRPS18A (ENSSCAG00000013545)	VEGFA (ENSSCAG00000013564)	MRPL14 (ENSSCAG00000013591)	TMEM63B (ENSSCAG00000013598)	CAPN11 (ENSSCAG00000013612)	SLC29A1 (ENSSCAG00000013635)	HSP90AB1 (ENSSCAG00000013643)	SLC35B2 (ENSSCAG00000013646)	NFKBIE (ENSSCAG00000013648)	TMEM151B (ENSSCAG00000013650)	ENSSCAG00000013653	AARS2 (ENSSCAG00000013661)	RNF8 (ENSSCAG00000013678)
Flycatcher	MODERN SPECIES	21	ENSFALG00000011625	ENSFALG00000027448	SCCPDH (ENSFALG00000023810)	CNST (ENSFALG00000011587)	TFB2M (ENSFALG00000011573)	ENSFALG00000023592 #7	ENSFALG00000011563 #7	KIF26B (ENSFALG00000011555) #9	EFCAB2 (ENSFALG00000011546) #10	HNRNPU (ENSFALG00000011528) #11	DESI2 (ENSFALG00000011507) #14	ADSS2 (ENSFALG00000011484) #16	ZBTB18 (ENSFALG00000011473) #18	AKT3 (ENSFALG00000011439) #19	ENSFALG00000011420	CEP170 (ENSFALG00000011398) #22	PLD5 (ENSFALG00000011379) #23	RSPH9 (ENSFALG00000025305)	MRPS18A (ENSFALG00000011356)	VEGFA (ENSFALG00000027112)	MRPL14 (ENSFALG00000011324)	TMEM63B (ENSFALG00000011313)	CAPN11 (ENSFALG00000011310)	SLC29A1 (ENSFALG00000011304)	HSP90AB1 (ENSFALG00000011300)	SLC35B2 (ENSFALG00000023207)	NFKBIE (ENSFALG00000011284)	TMEM151B (ENSFALG00000011278)	TCTE1 (ENSFALG00000011264)	AARS2 (ENSFALG00000011258)	RNF8 (ENSFALG00000011251)
Great tit	MODERN SPECIES	22	ENSPMJG00000015114	CEBPZ (ENSPMJG00000015113)	NDUFAF7 (ENSPMJG00000015112)	PRKD3 (ENSPMJG00000015111)	ENSPMJG00000015110	QPCT (ENSPMJG00000015109)	SLC30A6 (ENSPMJG00000015108)	ENSPMJG00000015107	SPAST (ENSPMJG00000015106)	DPY30 (ENSPMJG00000015105)	MEMO1 (ENSPMJG00000015104)	SRD5A2 (ENSPMJG00000015102)	ENSPMJG00000015100	AKT3 (ENSPMJG00000015099) #19	ENSPMJG00000015098	CEP170 (ENSPMJG00000015097) #22	PLD5 (ENSPMJG00000015095) #23	RSPH9 (ENSPMJG00000015094)	MRPS18A (ENSPMJG00000015093)	VEGFA (ENSPMJG00000015091)	ZBTB18 (ENSPMJG00000015085) #18	ENSPMJG00000015083	ENSPMJG00000015081	ADSS2 (ENSPMJG00000015080) #16	DESI2 (ENSPMJG00000015079) #14	COX20 (ENSPMJG00000015078) #12	HNRNPU (ENSPMJG00000015077) #11	EFCAB2 (ENSPMJG00000015075) #10	KIF26B (ENSPMJG00000015074) #9	ENSPMJG00000015073 #7	ENSPMJG00000015072 #7
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00390000005861	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00960000189424	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000170414	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
Kakapo	MODERN SPECIES	2	SCCPDH (ENSSHBG00005021115)	CNST (ENSSHBG00005021111)	ENSSHBG00005021110	TFB2M (ENSSHBG00005021109)	ENSSHBG00005021108 #7	ENSSHBG00005021106 #7	KIF26B (ENSSHBG00005021103) #9	EFCAB2 (ENSSHBG00005021101) #10	HNRNPU (ENSSHBG00005021100) #11	COX20 (ENSSHBG00005021099) #12	DESI2 (ENSSHBG00005021098) #14	ADSS2 (ENSSHBG00005021096) #16	ZBTB18 (ENSSHBG00005021093) #18	AKT3 (ENSSHBG00005021092) #19	ENSSHBG00005021079	CEP170 (ENSSHBG00005021076) #22	PLD5 (ENSSHBG00005021070) #23	MAP1LC3C (ENSSHBG00005021069) #25	EXO1 (ENSSHBG00005021067) #28	ENSSHBG00005021065 #29	OPN3 (ENSSHBG00005021063) #30	PIGM (ENSSHBG00005021062)	RGS7 (ENSSHBG00005021061) #33	GREM2 (ENSSHBG00005021059) #34	FMN2 (ENSSHBG00005021049) #35	RYR2 (ENSSHBG00005014250)	MTR (ENSSHBG00005011060)	ACTN2 (ENSSHBG00005010917)	HEATR1 (ENSSHBG00005010352)	LGALS8 (ENSSHBG00005010132)	ERO1B (ENSSHBG00005010097)
Golden eagle	MODERN SPECIES	4	CNST (ENSACCG00020008462)	TFB2M (ENSACCG00020008479)	ENSACCG00020008515 #7	ENSACCG00020008547 #7	KIF26B (ENSACCG00020008572) #9	EFCAB2 (ENSACCG00020008604) #10	HNRNPU (ENSACCG00020008633) #11	ENSACCG00020008665	COX20 (ENSACCG00020008679) #12	DESI2 (ENSACCG00020008693) #14	ADSS2 (ENSACCG00020008703) #16	ENSACCG00020008728	ZBTB18 (ENSACCG00020008740) #18	AKT3 (ENSACCG00020008750) #19	ENSACCG00020008818	CEP170 (ENSACCG00020008889) #22	PLD5 (ENSACCG00020008933) #23	ENSACCG00020008958	MAP1LC3C (ENSACCG00020008971) #25	EXO1 (ENSACCG00020008994) #28	WDR64 (ENSACCG00020009035) #29	OPN3 (ENSACCG00020009054) #30	PIGM (ENSACCG00020009063)	RGS7 (ENSACCG00020009103) #33	GREM2 (ENSACCG00020009170) #34	ENSACCG00020009194	CHRM3 (ENSACCG00020009211)	RYR2 (ENSACCG00020010478)	MTR (ENSACCG00020011388)	ACTN2 (ENSACCG00020011468)	HEATR1 (ENSACCG00020011571)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00960000189424	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00960000189749	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845
Anatidae	ANCESTRAL SPECIES	11	ENSGT00390000004799	ENSGT00390000005861	ENSGT00940000171704	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156766.s.b.a #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00730000111005 #14	ENSGT00390000015553.a.a.b #16	ENSGT00390000017364 #17	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Pink-footed goose	MODERN SPECIES	53											DESI2 (ENSABRG00000021358) #14	ADSS2 (ENSABRG00000021352) #16	ZBTB18 (ENSABRG00000021346) #18	AKT3 (ENSABRG00000021338) #19	ENSABRG00000021331	CEP170 (ENSABRG00000021318) #22	PLD5 (ENSABRG00000021308) #23	ENSABRG00000021304	MAP1LC3C (ENSABRG00000021300) #25	EXO1 (ENSABRG00000021292) #28	ENSABRG00000021279 #29	OPN3 (ENSABRG00000021276) #30	PIGM (ENSABRG00000021275)	RGS7 (ENSABRG00000021241) #33	GREM2 (ENSABRG00000021226) #34	FMN2 (ENSABRG00000021205) #35	CHRM3 (ENSABRG00000021192)	ENSABRG00000021176	ENSABRG00000021171	RYR2 (ENSABRG00000018175)	MTR (ENSABRG00000017015)
Duck	MODERN SPECIES	21	AHCTF1 (ENSAPLG00000005120)	ENSAPLG00000026920	SCCPDH (ENSAPLG00000004893)	CNST (ENSAPLG00000014445)	SMYD3 (ENSAPLG00000028273) #7	ENSAPLG00000019495	KIF26B (ENSAPLG00000012419) #9	EFCAB2 (ENSAPLG00000012390) #10	HNRNPU (ENSAPLG00000012268) #11	DESI2 (ENSAPLG00000012155) #14	ADSS2 (ENSAPLG00000011820) #16	ENSAPLG00000011818 #17	ZBTB18 (ENSAPLG00000002367) #18	AKT3 (ENSAPLG00000011477) #19	ENSAPLG00000011088	CEP170 (ENSAPLG00000010551) #22	PLD5 (ENSAPLG00000015142) #23	ENSAPLG00000030016	MAP1LC3C (ENSAPLG00000023202) #25	EXO1 (ENSAPLG00000015042) #28	OPN3 (ENSAPLG00000014871) #30	PIGM (ENSAPLG00000028189)	RGS7 (ENSAPLG00000014655) #33	GREM2 (ENSAPLG00000001754) #34	FMN2 (ENSAPLG00000014536) #35	CHRM3 (ENSAPLG00000014510)	ENSAPLG00000019479	RYR2 (ENSAPLG00000011026)	MTR (ENSAPLG00000009934)	ACTN2 (ENSAPLG00000008618)	HEATR1 (ENSAPLG00000008015)
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00960000189749	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Japanese quail	MODERN SPECIES	21	ENSCJPG00005013800	SCCPDH (ENSCJPG00005013801)	CNST (ENSCJPG00005013802)	TFB2M (ENSCJPG00005013803)	ENSCJPG00005013804 #7	ENSCJPG00005013805 #7	KIF26B (ENSCJPG00005013806) #9	ENSCJPG00005013807	HNRNPU (ENSCJPG00005013808) #11	COX20 (ENSCJPG00005013809) #12	DESI2 (ENSCJPG00005013810) #14	ADSS2 (ENSCJPG00005013811) #16	ZBTB18 (ENSCJPG00005013847) #18	AKT3 (ENSCJPG00005013848) #19	ENSCJPG00005013849	CEP170 (ENSCJPG00005013850) #22	PLD5 (ENSCJPG00005013854) #23	MAP1LC3C (ENSCJPG00005013857) #25	EXO1 (ENSCJPG00005013858) #28	ENSCJPG00005013860 #29	OPN3 (ENSCJPG00005013861) #30	PIGM (ENSCJPG00005013862)	RGS7 (ENSCJPG00005013863) #33	GREM2 (ENSCJPG00005013864) #34	ENSCJPG00005013865	CHRM3 (ENSCJPG00005013867)	RYR2 (ENSCJPG00005013886)	MTR (ENSCJPG00005016942)	ACTN2 (ENSCJPG00005017895)	HEATR1 (ENSCJPG00005019750)	LGALS8 (ENSCJPG00005019927)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000163104.e	ENSGT00390000004799	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.s.b.b #7	ENSGT00940000156992 #9	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00960000189749	ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824	ENSGT00940000153968.a.b.a	ENSGT00390000015845	ENSGT00940000155727
Chicken	DUPLICATION
Chicken	MODERN SPECIES	22	SCCPDH (ENSGALG00010010197)	CNST (ENSGALG00010010338)	TFB2M (ENSGALG00010010346)	SMYD3 (ENSGALG00010006922) #7	KIF26B (ENSGALG00010006958) #9	EFCAB2 (ENSGALG00010006865) #10	HNRNPU (ENSGALG00010008192) #11	COX20 (ENSGALG00010008226) #12	DESI2 (ENSGALG00010008257) #14	C1orf101 (ENSGALG00010008263)	ADSS2 (ENSGALG00010008285) #16	ZBTB18 (ENSGALG00010008312) #18	AKT3 (ENSGALG00010008323) #19	ENSGALG00010008348	ENSGALG00010008356 #22	ENSGALG00010010897 #22	ENSGALG00010008364	ENSGALG00010008367	PLD5 (ENSGALG00010008383) #23	MAP1LC3C (ENSGALG00010008400) #25	EXO1 (ENSGALG00010008422) #28	WDR64 (ENSGALG00010008442) #29	OPN3 (ENSGALG00010008451) #30	PIGM (ENSGALG00010010361)	RGS7 (ENSGALG00010008637) #33	GREM2 (ENSGALG00010008824) #34	FMN2 (ENSGALG00010008880)	CHRM3 (ENSGALG00010008996)	RYR2 (ENSGALG00010009054)	MTR (ENSGALG00010009104)	ACTN2 (ENSGALG00010009118)
Chicken	MODERN SPECIES	22	ENSGALG00010010164	SCCPDH (ENSGALG00010010197)	CNST (ENSGALG00010010338)	TFB2M (ENSGALG00010010346)	SMYD3 (ENSGALG00010006922) #7	KIF26B (ENSGALG00010006958) #9	EFCAB2 (ENSGALG00010006865) #10	HNRNPU (ENSGALG00010008192) #11	COX20 (ENSGALG00010008226) #12	DESI2 (ENSGALG00010008257) #14	C1orf101 (ENSGALG00010008263)	ADSS2 (ENSGALG00010008285) #16	ZBTB18 (ENSGALG00010008312) #18	AKT3 (ENSGALG00010008323) #19	ENSGALG00010008348	ENSGALG00010008356 #22	ENSGALG00010010897 #22	ENSGALG00010008364	ENSGALG00010008367	PLD5 (ENSGALG00010008383) #23	MAP1LC3C (ENSGALG00010008400) #25	EXO1 (ENSGALG00010008422) #28	WDR64 (ENSGALG00010008442) #29	OPN3 (ENSGALG00010008451) #30	PIGM (ENSGALG00010010361)	RGS7 (ENSGALG00010008637) #33	GREM2 (ENSGALG00010008824) #34	FMN2 (ENSGALG00010008880)	CHRM3 (ENSGALG00010008996)	RYR2 (ENSGALG00010009054)	MTR (ENSGALG00010009104)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	11	PPP1CB (ENSMGAG00000010432)	ENSMGAG00000010457	FOSL2 (ENSMGAG00000022391)	ENSMGAG00000011593	ENSMGAG00000017342	ENSMGAG00000015834 #34	ENSMGAG00000018471	ENSMGAG00000011557 #33	ENSMGAG00000011545 #30	ENSMGAG00000011527 #29	ENSMGAG00000021226 #29	ENSMGAG00000011525 #28	ENSMGAG00000023018 #25	ENSMGAG00000021812 #23	ENSMGAG00000021098	ENSMGAG00000011504 #22	ENSMGAG00000018116 #22	ENSMGAG00000018419	ENSMGAG00000011477 #19	ENSMGAG00000011487	ENSMGAG00000011476 #18	ENSMGAG00000011463 #16	ENSMGAG00000021050 #16	ENSMGAG00000021227 #15	ENSMGAG00000017863 #14	ENSMGAG00000011427 #11	ENSMGAG00000011449 #12	EFCAB2 (ENSMGAG00000011423) #10	ENSMGAG00000011412 #9	ENSMGAG00000011410 #7	ENSMGAG00000020397 #7
Turkey	MODERN SPECIES	11	ENSMGAG00000010457	FOSL2 (ENSMGAG00000022391)	ENSMGAG00000011593	ENSMGAG00000017342	ENSMGAG00000015834 #34	ENSMGAG00000018471	ENSMGAG00000011557 #33	ENSMGAG00000011545 #30	ENSMGAG00000011527 #29	ENSMGAG00000021226 #29	ENSMGAG00000011525 #28	ENSMGAG00000023018 #25	ENSMGAG00000021812 #23	ENSMGAG00000021098	ENSMGAG00000011504 #22	ENSMGAG00000018116 #22	ENSMGAG00000018419	ENSMGAG00000011477 #19	ENSMGAG00000011487	ENSMGAG00000011476 #18	ENSMGAG00000011463 #16	ENSMGAG00000021050 #16	ENSMGAG00000021227 #15	ENSMGAG00000017863 #14	ENSMGAG00000011427 #11	ENSMGAG00000011449 #12	EFCAB2 (ENSMGAG00000011423) #10	ENSMGAG00000011412 #9	ENSMGAG00000011410 #7	ENSMGAG00000020397 #7	ENSMGAG00000018106
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT01100000263477.B	ENSGT00950000183059.b.a.b #23	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000154289.B	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824
Chinese turtle	MODERN SPECIES	2036	ENSPSIG00000005576	SCCPDH (ENSPSIG00000005523)	CNST (ENSPSIG00000005514)	TFB2M (ENSPSIG00000005507)	ENSPSIG00000005502 #7	ENSPSIG00000005494 #7	KIF26B (ENSPSIG00000005452) #9	EFCAB2 (ENSPSIG00000005428) #10	HNRNPU (ENSPSIG00000005253) #11	DESI2 (ENSPSIG00000005222) #14	COX20 (ENSPSIG00000005206) #12	ADSS2 (ENSPSIG00000005131) #16	AKT3 (ENSPSIG00000005085) #19	ENSPSIG00000005057	ENSPSIG00000004976	CEP170 (ENSPSIG00000004932) #22	PLD5 (ENSPSIG00000004919) #23
Testudinoidea	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT01100000263477.B.a.a	ENSGT00950000183059.b.a.b #23	ENSGT01100000263477.B.a.b.a.b	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000160084	ENSGT00940000154906.C.d	ENSGT00420000029824
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT01100000263477.B.a.a	ENSGT00950000183059.b.a.b.i #23	ENSGT00950000183059.b.a.b.j #23	ENSGT01100000263477.B.a.b.a.b	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037 #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT01030000235112 #37	ENSGT00940000160084	ENSGT01050000246680
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2165	ENSCABG00000019112 #7	ENSCABG00000019116 #7	KIF26B (ENSCABG00000019123) #9	ENSCABG00000019128	EFCAB2 (ENSCABG00000019130) #10	HNRNPU (ENSCABG00000019135) #11	COX20 (ENSCABG00000019207) #12	DESI2 (ENSCABG00000019209) #14	ENSCABG00000019211	ADSS2 (ENSCABG00000019217) #16	ZBTB18 (ENSCABG00000019220) #18	AKT3 (ENSCABG00000019225) #19	ENSCABG00000019231	ENSCABG00000019240 #22	ENSCABG00000019241 #22	ENSCABG00000019243 #22	ENSCABG00000019244
Abingdon island giant tortoise	MODERN SPECIES	2165	ENSCABG00000019110	TFB2M (ENSCABG00000019111)	ENSCABG00000019112 #7	ENSCABG00000019116 #7	KIF26B (ENSCABG00000019123) #9	ENSCABG00000019128	EFCAB2 (ENSCABG00000019130) #10	HNRNPU (ENSCABG00000019135) #11	COX20 (ENSCABG00000019207) #12	DESI2 (ENSCABG00000019209) #14	ENSCABG00000019211	ADSS2 (ENSCABG00000019217) #16	ZBTB18 (ENSCABG00000019220) #18	AKT3 (ENSCABG00000019225) #19	ENSCABG00000019231	ENSCABG00000019240 #22	ENSCABG00000019241 #22	ENSCABG00000019243 #22	ENSCABG00000019244
Abingdon island giant tortoise	MODERN SPECIES	2165	TFB2M (ENSCABG00000019111)	ENSCABG00000019112 #7	ENSCABG00000019116 #7	KIF26B (ENSCABG00000019123) #9	ENSCABG00000019128	EFCAB2 (ENSCABG00000019130) #10	HNRNPU (ENSCABG00000019135) #11	COX20 (ENSCABG00000019207) #12	DESI2 (ENSCABG00000019209) #14	ENSCABG00000019211	ADSS2 (ENSCABG00000019217) #16	ZBTB18 (ENSCABG00000019220) #18	AKT3 (ENSCABG00000019225) #19	ENSCABG00000019231	ENSCABG00000019240 #22	ENSCABG00000019241 #22	ENSCABG00000019243 #22	ENSCABG00000019244
Goode s thornscrub tortoise	MODERN SPECIES	17	TFB2M (ENSGEVG00005008934)	ENSGEVG00005008911 #7	ENSGEVG00005008863 #7	KIF26B (ENSGEVG00005008743) #9	ENSGEVG00005008713	EFCAB2 (ENSGEVG00005008659) #10	HNRNPU (ENSGEVG00005008607) #11	COX20 (ENSGEVG00005008584) #12	DESI2 (ENSGEVG00005008575) #14	ENSGEVG00005008540 #15	ADSS2 (ENSGEVG00005008513) #16	ENSGEVG00005008494	ZBTB18 (ENSGEVG00005008483) #18	AKT3 (ENSGEVG00005008378) #19	ENSGEVG00005008314	CEP170 (ENSGEVG00005007486) #22	ENSGEVG00005007329	ENSGEVG00005007295 #23	ENSGEVG00005007282 #23	ENSGEVG00005007255	MAP1LC3C (ENSGEVG00005007218) #25	EXO1 (ENSGEVG00005007131) #28	WDR64 (ENSGEVG00005007015) #29	OPN3 (ENSGEVG00005006979) #30	PIGM (ENSGEVG00005006959)	RGS7 (ENSGEVG00005006882) #33	GREM2 (ENSGEVG00005006866) #34	ENSGEVG00005006835 #35	ENSGEVG00005006792 #37	CHRM3 (ENSGEVG00005006759)	ENSGEVG00005006736
Emydidae	ANCESTRAL SPECIES		ENSGT00950000183142.a.b.a.b	ENSGT00940000156766.t #7	ENSGT00940000156766.s #7	ENSGT00940000156992 #9	ENSGT00940000165019	ENSGT00940000160590 #10	ENSGT00940000156546 #11	ENSGT00390000016158 #12	ENSGT00730000111005 #14	ENSGT00940000162691 #15	ENSGT00390000015553.a.a.b #16	ENSGT01000000216868	ENSGT00940000155092.b #18	ENSGT00940000157060 #19	ENSGT00940000164292	ENSGT00940000155103.a.b #22	ENSGT01100000263477.B.a.a	ENSGT00950000183059.b.a.b #23	ENSGT01100000263477.B.a.b.a.b	ENSGT01100000263477.B.a.b.a.a	ENSGT01100000263477.B.a.b.b	ENSGT00940000161852.y.a #25	ENSGT00510000047676 #28	ENSGT00940000160037.g #29	ENSGT01100000263502.A.a.b #30	ENSGT00390000017728	ENSGT00940000156661 #33	ENSGT00940000154209.a.b #34	ENSGT00940000161899 #35	ENSGT00940000160084	ENSGT00940000154906.C.d
painted turtle	MODERN SPECIES	740				ENSCPBG00000009453 #7	KIF26B (ENSCPBG00000009439) #9	EFCAB2 (ENSCPBG00000009428) #10	HNRNPU (ENSCPBG00000009415) #11	COX20 (ENSCPBG00000009409) #12	DESI2 (ENSCPBG00000009405) #14	CATSPERE (ENSCPBG00000009395) #15	ADSS2 (ENSCPBG00000008911) #16	ENSCPBG00000008896	ZBTB18 (ENSCPBG00000008891) #18	AKT3 (ENSCPBG00000008877) #19	ENSCPBG00000008841	CEP170 (ENSCPBG00000008802) #22	ENSCPBG00000008793	PLD5 (ENSCPBG00000008770) #23	ENSCPBG00000008755	ENSCPBG00000008747	ENSCPBG00000008739	MAP1LC3C (ENSCPBG00000008734) #25	EXO1 (ENSCPBG00000008725) #28	ENSCPBG00000008720 #29	ENSCPBG00000008703 #30	PIGM (ENSCPBG00000008700)	RGS7 (ENSCPBG00000008651) #33	FMN2 (ENSCPBG00000008555) #35	CHRM3 (ENSCPBG00000008538)	ENSCPBG00000008533	ENSCPBG00000008528
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	31	ENSTMTG00000008323 #7	ENSTMTG00000008337 #7	KIF26B (ENSTMTG00000008353) #9	ENSTMTG00000008402	ENSTMTG00000008415	EFCAB2 (ENSTMTG00000008442) #10	HNRNPU (ENSTMTG00000008554) #11	COX20 (ENSTMTG00000008601) #12	DESI2 (ENSTMTG00000008608) #14	ENSTMTG00000008625	ADSS2 (ENSTMTG00000008677) #16	ZBTB18 (ENSTMTG00000008708) #18	AKT3 (ENSTMTG00000008734) #19	ENSTMTG00000008872	ENSTMTG00000009362 #22	ENSTMTG00000009377 #22	ENSTMTG00000009398 #22	ENSTMTG00000009425	PLD5 (ENSTMTG00000009450) #23	ENSTMTG00000009546	ENSTMTG00000009558	ENSTMTG00000009581	MAP1LC3C (ENSTMTG00000009592) #25	EXO1 (ENSTMTG00000009610) #28	ENSTMTG00000009584 #29	ENSTMTG00000009618 #29	OPN3 (ENSTMTG00000009640) #30	PIGM (ENSTMTG00000009659)	RGS7 (ENSTMTG00000009674) #33	GREM2 (ENSTMTG00000009736) #34	FMN2 (ENSTMTG00000009751) #35
Three-toed box turtle	MODERN SPECIES	31	ENSTMTG00000008337 #7	KIF26B (ENSTMTG00000008353) #9	ENSTMTG00000008402	ENSTMTG00000008415	EFCAB2 (ENSTMTG00000008442) #10	HNRNPU (ENSTMTG00000008554) #11	COX20 (ENSTMTG00000008601) #12	DESI2 (ENSTMTG00000008608) #14	ENSTMTG00000008625	ADSS2 (ENSTMTG00000008677) #16	ZBTB18 (ENSTMTG00000008708) #18	AKT3 (ENSTMTG00000008734) #19	ENSTMTG00000008872	ENSTMTG00000009362 #22	ENSTMTG00000009377 #22	ENSTMTG00000009398 #22	ENSTMTG00000009425	PLD5 (ENSTMTG00000009450) #23	ENSTMTG00000009546	ENSTMTG00000009558	ENSTMTG00000009581	MAP1LC3C (ENSTMTG00000009592) #25	EXO1 (ENSTMTG00000009610) #28	ENSTMTG00000009584 #29	ENSTMTG00000009618 #29	OPN3 (ENSTMTG00000009640) #30	PIGM (ENSTMTG00000009659)	RGS7 (ENSTMTG00000009674) #33	GREM2 (ENSTMTG00000009736) #34	FMN2 (ENSTMTG00000009751) #35	CHRM3 (ENSTMTG00000009823)
Three-toed box turtle	MODERN SPECIES	31	TFB2M (ENSTMTG00000008308)	ENSTMTG00000008323 #7	ENSTMTG00000008337 #7	KIF26B (ENSTMTG00000008353) #9	ENSTMTG00000008402	ENSTMTG00000008415	EFCAB2 (ENSTMTG00000008442) #10	HNRNPU (ENSTMTG00000008554) #11	COX20 (ENSTMTG00000008601) #12	DESI2 (ENSTMTG00000008608) #14	ENSTMTG00000008625	ADSS2 (ENSTMTG00000008677) #16	ZBTB18 (ENSTMTG00000008708) #18	AKT3 (ENSTMTG00000008734) #19	ENSTMTG00000008872	ENSTMTG00000009362 #22	ENSTMTG00000009377 #22	ENSTMTG00000009398 #22	ENSTMTG00000009425	PLD5 (ENSTMTG00000009450) #23	ENSTMTG00000009546	ENSTMTG00000009558	ENSTMTG00000009581	MAP1LC3C (ENSTMTG00000009592) #25	EXO1 (ENSTMTG00000009610) #28	ENSTMTG00000009584 #29	ENSTMTG00000009618 #29	OPN3 (ENSTMTG00000009640) #30	PIGM (ENSTMTG00000009659)	RGS7 (ENSTMTG00000009674) #33	GREM2 (ENSTMTG00000009736) #34
Anura	ANCESTRAL SPECIES	385													ENSGT00390000015553.a.a.b #16	ENSGT00940000155092.b #18	ENSGT00940000164292	ENSGT00940000155103.a.b #22
Frog	MODERN SPECIES	5	coa6 (ENSXETG00000016226)	ENSXETG00000044965	tarbp1 (ENSXETG00000016224)	ENSXETG00000044188	ero1b (ENSXETG00000016223)	gpr137b (ENSXETG00000016222)	nid1 (ENSXETG00000016220)	ENSXETG00000043277	rnaset2 (ENSXETG00000048600)	ENSXETG00000042751	ccr6 (ENSXETG00000036513)	cep43 (ENSXETG00000014534)	adss2 (ENSXETG00000014538) #16	zbtb18 (ENSXETG00000014541) #18	sdccag8 (ENSXETG00000014544)	cep170 (ENSXETG00000014548) #22	map1lc3c (ENSXETG00000032112) #32	slc35f3 (ENSXETG00000039979)	pcnx2 (ENSXETG00000014571)	ntpcr (ENSXETG00000014584)	ENSXETG00000045588	ENSXETG00000043235	sipa1l2 (ENSXETG00000033496)	ENSXETG00000044488	ENSXETG00000047644	acta1 (ENSXETG00000021417)	sprtn (ENSXETG00000021416)	egln1 (ENSXETG00000021414)	tsnax (ENSXETG00000026152)	exoc8 (ENSXETG00000021410)	sf3b5 (ENSXETG00000044607)