Osteoglossocephalai	ANCESTRAL SPECIES		ENSGT00940000157771	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b #21	ENSGT00390000009995	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481 #24	ENSGT01000000215232	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00940000159833	ENSGT00940000165857 #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00510000048144	ENSGT00940000156346.c.a ##34
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.b	ENSGT00940000165481.a.a ##24	ENSGT01000000215232	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00940000159833	ENSGT00940000165857.a ##29	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165481.a.b ##24	ENSGT00940000165481.a.a ##24	ENSGT01000000215232	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.rb ##21	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Tiger tail seahorse	MODERN SPECIES	311	ENSHCOG00000011649	ENSHCOG00000011678	ENSHCOG00000011706	parietopsin (ENSHCOG00000011717)	NT5DC3 (ENSHCOG00000011744)	hsp90b1 (ENSHCOG00000011791)	ENSHCOG00000011864	hbp1 (ENSHCOG00000011877)	GPR22 (ENSHCOG00000011890) ##21	idh2 (ENSHCOG00000011933) #28	znf710a (ENSHCOG00000011956) #27	sema4ba (ENSHCOG00000011978) #26	zgc:162879 (ENSHCOG00000012026) #25	ENSHCOG00000012050 #24	ENSHCOG00000012065	pex11a (ENSHCOG00000012078) #22	slco3a1a (ENSHCOG00000012097) #19	kif5c (ENSHCOG00000012129)	kif5c (ENSHCOG00000012166)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Clown anemonefish	MODERN SPECIES	2761																pex11a (ENSAOCG00000006275) #22	ENSAOCG00000006259 #23	ENSAOCG00000006245 #24	zgc:162879 (ENSAOCG00000006210) #25
Orange clownfish	MODERN SPECIES	18	igf1ra (ENSAPEG00000015850)	PGPEP1L (ENSAPEG00000015958)	synm (ENSAPEG00000015974) #7	mef2aa (ENSAPEG00000016007) #9	ENSAPEG00000016136 #10	nr2f2 (ENSAPEG00000016561) #11	lysmd4 (ENSAPEG00000016599) #12	rgma (ENSAPEG00000016612) #13	ENSAPEG00000016637	chd2 (ENSAPEG00000016676) #15	fam174b (ENSAPEG00000016869) #17	st8sia2 (ENSAPEG00000016880) #18	slco3a1a (ENSAPEG00000016887) #19	si:dkeyp-59c12.1 (ENSAPEG00000016929) #20	gnrhr4 (ENSAPEG00000016962) #21	pex11a (ENSAPEG00000017406) #22	ENSAPEG00000017417 #23	ENSAPEG00000017438 #24	zgc:162879 (ENSAPEG00000017489) #25	sema4ba (ENSAPEG00000017616) #26	znf710a (ENSAPEG00000017816) #27	idh2 (ENSAPEG00000017839) #28	ENSAPEG00000017892 #29	ENSAPEG00000017919 #30	RASGRF1 (ENSAPEG00000017929) #31	ctsh (ENSAPEG00000018069) #32	ENSAPEG00000018105 #33	FRMD5 (ENSAPEG00000018154) #34	ENSAPEG00000018189 #34	ENSAPEG00000018202 #35	ENSAPEG00000018262 #36
Spiny chromis	MODERN SPECIES	103						nr2f2 (ENSAPOG00000009067) #11	lysmd4 (ENSAPOG00000009046) #12	rgma (ENSAPOG00000008997) #13	ENSAPOG00000008957	chd2 (ENSAPOG00000008913) #15	fam174b (ENSAPOG00000008724) #17	st8sia2 (ENSAPOG00000000227) #18	slco3a1a (ENSAPOG00000008676) #19	si:dkeyp-59c12.1 (ENSAPOG00000008629) #20	gnrhr4 (ENSAPOG00000008618) #21	pex11a (ENSAPOG00000008611) #22	ENSAPOG00000008587 #23	ENSAPOG00000008576 #24	zgc:162879 (ENSAPOG00000008539) #25	sema4ba (ENSAPOG00000008498) #26	znf710a (ENSAPOG00000008474) #27	idh2 (ENSAPOG00000008457) #28	ENSAPOG00000008411 #29	ENSAPOG00000008380 #30
Bicolor damselfish	MODERN SPECIES	2712															gnrhr4 (ENSSPAG00000016556) #21	pex11a (ENSSPAG00000017610) #22	ENSSPAG00000017627 #23
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00940000179042	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT01060000248766.b	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00940000179042	ENSGT00390000018044.a #35
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT01100000263664.b.a	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT01060000248766.b.b	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00940000179042	ENSGT00390000018044.a #35
Burton s mouthbrooder	MODERN SPECIES	368															gnrhr4 (ENSHBUG00000016376) #21	pex11a (ENSHBUG00000016368) #22	ENSHBUG00000016358 #23	ENSHBUG00000016343 #24	zgc:162879 (ENSHBUG00000016335) #25	sema4ba (ENSHBUG00000016246) #26	ENSHBUG00000016234	znf710a (ENSHBUG00000016225) #27	idh2 (ENSHBUG00000016211) #28	ENSHBUG00000016180 #29	ENSHBUG00000016129 #30	RASGRF1 (ENSHBUG00000016117) #31	ctsh (ENSHBUG00000015950) #32	BLM (ENSHBUG00000015943) #33	FRMD5 (ENSHBUG00000015930) #34	FRMD5 (ENSHBUG00000015923) #34	ENSHBUG00000001032
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT01100000263664.b.a	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT01060000248766.b.b	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00940000179042	ENSGT00390000018044.a #35
P. nyererei	MODERN SPECIES	330	synm (ENSPNYG00000009951) #7	mef2aa (ENSPNYG00000009994) #9	ENSPNYG00000010077 #10	nr2f2 (ENSPNYG00000010176) #11	ENSPNYG00000010203	lysmd4 (ENSPNYG00000010220) #12	rgma (ENSPNYG00000010229) #13	ENSPNYG00000010253	chd2 (ENSPNYG00000010273) #15	fam174b (ENSPNYG00000010335) #17	st8sia2 (ENSPNYG00000010345) #18	slco3a1a (ENSPNYG00000010413) #19	si:dkeyp-59c12.1 (ENSPNYG00000010458) #20	ENSPNYG00000010475	ENSPNYG00000010488 ##21	pex11a (ENSPNYG00000010500) #22	ENSPNYG00000010510 #23	zgc:162879 (ENSPNYG00000010530) #25	sema4ba (ENSPNYG00000010604) #26	znf710a (ENSPNYG00000010732) #27	idh2 (ENSPNYG00000010747) #28	ENSPNYG00000010783 #29	ENSPNYG00000010853 #30	RASGRF1 (ENSPNYG00000010890) #31	ctsh (ENSPNYG00000010936) #32	ENSPNYG00000010956 #33	ENSPNYG00000010999 #34	ENSPNYG00000011032	ENSPNYG00000011054 #35	ENSPNYG00000011100 #36	slc28a1 (ENSPNYG00000011137) #37
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT01100000263664.b.a	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT01100000264136	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT01060000248766.b.b	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00940000179042	ENSGT00390000018044.a #35
Zebra mbuna	MODERN SPECIES	1110	igf1ra (ENSMZEG00005021278)	ENSMZEG00005021285	synm (ENSMZEG00005021288) #7	mef2aa (ENSMZEG00005021299) #9	ENSMZEG00005021310 #10	nr2f2 (ENSMZEG00005021316) #11	ENSMZEG00005021320	lysmd4 (ENSMZEG00005021324) #12	rgma (ENSMZEG00005021329) #13	chd2 (ENSMZEG00005021333) #15	fam174b (ENSMZEG00005021342) #17	st8sia2 (ENSMZEG00005021348) #18	slco3a1a (ENSMZEG00005021357) #19	si:dkeyp-59c12.1 (ENSMZEG00005021361) #20	gnrhr4 (ENSMZEG00005021398) #21	pex11a (ENSMZEG00005022237) #22	ENSMZEG00005022247 #23	ENSMZEG00005022252 #24	zgc:162879 (ENSMZEG00005022256) #25	sema4ba (ENSMZEG00005022271) #26	znf710a (ENSMZEG00005022291) #27	idh2 (ENSMZEG00005022294) #28	ENSMZEG00005022295 #29	ENSMZEG00005022298 #30	RASGRF1 (ENSMZEG00005022309) #31	BLM (ENSMZEG00005022323) #33	FRMD5 (ENSMZEG00005022332) #34	ENSMZEG00005022334 #34	ENSMZEG00005022336	ENSMZEG00005022338 #35	ENSMZEG00005022340 #36
Eastern happy	MODERN SPECIES	19	synm (ENSACLG00000021881) #7	ENSACLG00000021871	mef2aa (ENSACLG00000021682) #9	ENSACLG00000021565 #10	nr2f2 (ENSACLG00000021486) #11	ENSACLG00000021472	lysmd4 (ENSACLG00000021463) #12	rgma (ENSACLG00000021451) #13	ENSACLG00000021440	chd2 (ENSACLG00000021370) #15	fam174b (ENSACLG00000021357) #17	st8sia2 (ENSACLG00000021303) #18	slco3a1a (ENSACLG00000021251) #19	si:dkeyp-59c12.1 (ENSACLG00000021245) #20	gnrhr4 (ENSACLG00000021236) #21	pex11a (ENSACLG00000021194) #22	ENSACLG00000021171 #23	ENSACLG00000021159 #24	zgc:162879 (ENSACLG00000021066) #25	ENSACLG00000021042	sema4ba (ENSACLG00000020921) #26	znf710a (ENSACLG00000020888) #27	idh2 (ENSACLG00000020847) #28	ENSACLG00000020838 #30	ENSACLG00000020834 #29	RASGRF1 (ENSACLG00000020568) #31	ctsh (ENSACLG00000020426) #32	BLM (ENSACLG00000020354) #33	FRMD5 (ENSACLG00000020212) #34	ENSACLG00000020204	ENSACLG00000020182 #35
Lyretail cichlid	MODERN SPECIES	305	PGPEP1L (ENSNBRG00000021032)	synm (ENSNBRG00000021019) #7	mef2aa (ENSNBRG00000020999) #9	ENSNBRG00000020791 #10	nr2f2 (ENSNBRG00000020733) #11	ENSNBRG00000020713	lysmd4 (ENSNBRG00000020700) #12	ENSNBRG00000020688	rgma (ENSNBRG00000020662) #13	chd2 (ENSNBRG00000020591) #15	fam174b (ENSNBRG00000020584) #17	st8sia2 (ENSNBRG00000020566) #18	slco3a1a (ENSNBRG00000020539) #19	si:dkeyp-59c12.1 (ENSNBRG00000020526) #20	gnrhr4 (ENSNBRG00000020258) #21	pex11a (ENSNBRG00000020182) #22	ENSNBRG00000020167 #23	ENSNBRG00000020153 #23	ENSNBRG00000020142 #24	zgc:162879 (ENSNBRG00000020110) #25	sema4ba (ENSNBRG00000019961) #26	ENSNBRG00000019915	znf710a (ENSNBRG00000019888) #27	idh2 (ENSNBRG00000019851) #28	ENSNBRG00000019844 #29	ENSNBRG00000019839 #30	RASGRF1 (ENSNBRG00000019779) #31	ctsh (ENSNBRG00000019749) #32	BLM (ENSNBRG00000019702) #33	FRMD5 (ENSNBRG00000019654) #34	ENSNBRG00000019631
Nile tilapia	MODERN SPECIES	19	cfap161 (ENSONIG00000039493)	igf1ra (ENSONIG00000015115)	synm (ENSONIG00000015124) #7	ENSONIG00000015122	mef2aa (ENSONIG00000015126) #9	ENSONIG00000015130 #10	nr2f2 (ENSONIG00000015133) #11	lysmd4 (ENSONIG00000015134) #12	rgma (ENSONIG00000033013) #13	chd2 (ENSONIG00000015136) #15	fam174b (ENSONIG00000015144) #17	st8sia2 (ENSONIG00000015145) #18	slco3a1a (ENSONIG00000015148) #19	si:dkeyp-59c12.1 (ENSONIG00000033192) #20	gnrhr4 (ENSONIG00000015155) #21	pex11a (ENSONIG00000039417) #22	ENSONIG00000015159 #23	ENSONIG00000015163 #24	zgc:162879 (ENSONIG00000015165) #25	sema4ba (ENSONIG00000015171) #26	znf710a (ENSONIG00000038097) #27	idh2 (ENSONIG00000015176) #28	ENSONIG00000020965 #30	ENSONIG00000015179 #29	RASGRF1 (ENSONIG00000015181) #31	ctsh (ENSONIG00000015188) #32	ENSONIG00000015193 #33	FRMD5 (ENSONIG00000015202) #34	ENSONIG00000029590	ENSONIG00000015206 #35	ENSONIG00000015209 #36
Midas cichlid	MODERN SPECIES	385	PGPEP1L (ENSACIG00000023469)	ENSACIG00000023484 #7	ENSACIG00000023488 #8	mef2aa (ENSACIG00000023491) #9	ENSACIG00000023507 #10	nr2f2 (ENSACIG00000023557) #11	lysmd4 (ENSACIG00000023559) #12	rgma (ENSACIG00000023566) #13	ENSACIG00000023571	chd2 (ENSACIG00000023575) #15	fam174b (ENSACIG00000023583) #17	st8sia2 (ENSACIG00000023584) #18	slco3a1a (ENSACIG00000023585) #19	si:dkeyp-59c12.1 (ENSACIG00000023588) #20	ENSACIG00000023595 #21	pex11a (ENSACIG00000023702) #22	ENSACIG00000023706 #23	ENSACIG00000023713 #24	zgc:162879 (ENSACIG00000023717) #25	ENSACIG00000023722 #26	znf710a (ENSACIG00000023728) #27	idh2 (ENSACIG00000023731) #28	ENSACIG00000023734 #29	ENSACIG00000023739 #30	RASGRF1 (ENSACIG00000023747) #31	BLM (ENSACIG00000023762) #33	ENSACIG00000000195 #34	ENSACIG00000000251 #36	slc28a1 (ENSACIG00000000262) #37	ENSACIG00000000386	ENSACIG00000000418
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00940000174630 #14	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.m #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Turquoise killifish	MODERN SPECIES	1622	ENSNFUG00015011164	ENSNFUG00015011150	ENSNFUG00015011138	LYSMD4 (ENSNFUG00015011126) #12	ENSNFUG00015011113	ENSNFUG00015011098 #14	rgma (ENSNFUG00015011084) #13	chd2 (ENSNFUG00015009919) #15	fam174b (ENSNFUG00015009833) #17	ST8SIA2 (ENSNFUG00015009804) #18	SLCO3A1 (ENSNFUG00015009739) #19	si:dkeyp-59c12.1 (ENSNFUG00015009720) #20	gnrhr4 (ENSNFUG00015009691) #21	ENSNFUG00015009682	COMMD6 (ENSNFUG00015009670)	PEX11A (ENSNFUG00015009659) #22	ENSNFUG00015009617 #23	ENSNFUG00015009647 #23	Nfu_g_1_008448 (ENSNFUG00015009590) #24	Nfu_g_1_008252 (ENSNFUG00015009534) #25	sema4ba (ENSNFUG00015009372) #26	ENSNFUG00015009338	znf710a (ENSNFUG00015009332) #27	IDH2 (ENSNFUG00015007968) #28	ENSNFUG00015007734 #29	ENSNFUG00015007715	RASGRF1 (ENSNFUG00015007625) #31	BLM (ENSNFUG00015006913) #33	ENSNFUG00015006722 #34	ENSNFUG00015006701 #35	ENSNFUG00015006696 #36
Mangrove rivulus	MODERN SPECIES	6	synm (ENSKMAG00000015444) #7	TTC23 (ENSKMAG00000015468) #8	mef2aa (ENSKMAG00000015546) #9	ENSKMAG00000015682 #10	nr2f2 (ENSKMAG00000015717) #11	lysmd4 (ENSKMAG00000015747) #12	ENSKMAG00000015760	rgma (ENSKMAG00000015791) #13	ENSKMAG00000015812 #14	chd2 (ENSKMAG00000015849) #15	fam174b (ENSKMAG00000015922) #17	st8sia2 (ENSKMAG00000015933) #18	slco3a1a (ENSKMAG00000015955) #19	si:dkeyp-59c12.1 (ENSKMAG00000015976) #20	gnrhr4 (ENSKMAG00000016030) #21	pex11a (ENSKMAG00000016138) #22	ENSKMAG00000016150 #23	ENSKMAG00000016184 #24	zgc:162879 (ENSKMAG00000016246) #25	sema4ba (ENSKMAG00000016286) #26	znf710a (ENSKMAG00000016329) #27	idh2 (ENSKMAG00000016352) #28	ENSKMAG00000016392 #29	ENSKMAG00000016413 #30	RASGRF1 (ENSKMAG00000016454) #31	ctsh (ENSKMAG00000016554) #32	BLM (ENSKMAG00000016608) #33	FRMD5 (ENSKMAG00000016657) #34	ENSKMAG00000016695 #36	slc28a1 (ENSKMAG00000016727) #37	znf592 (ENSKMAG00000016765)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Poecilia	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
NAME_6	ANCESTRAL SPECIES	38							ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g.c #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1615													slco3a1a (ENSPLAG00000014376) #19	si:dkeyp-59c12.1 (ENSPLAG00000014393) #20	ENSPLAG00000015153 #21	pex11a (ENSPLAG00000015191) #22	ENSPLAG00000015207 #23
Sailfin molly	MODERN SPECIES	575																pex11a (ENSPLAG00000020601) #22	ENSPLAG00000020636 #23	zgc:162879 (ENSPLAG00000020643) #25	sema4ba (ENSPLAG00000020782) #26	znf710a (ENSPLAG00000020833) #27	idh2 (ENSPLAG00000020843) #28	ENSPLAG00000020853 #29	ENSPLAG00000020856 #30	RASGRF1 (ENSPLAG00000020948) #31	ENSPLAG00000020981 #32
Amazon molly	MODERN SPECIES	441						nr2f2 (ENSPFOG00000007117) #11	lysmd4 (ENSPFOG00000007081) #12	rgma (ENSPFOG00000007056) #13	chd2 (ENSPFOG00000007050) #15	fam174b (ENSPFOG00000007045) #17	st8sia2 (ENSPFOG00000006977) #18	slco3a1a (ENSPFOG00000006866) #19	si:dkeyp-59c12.1 (ENSPFOG00000006808) #20	ENSPFOG00000006780 #21	ENSPFOG00000006748 #23	pex11a (ENSPFOG00000006711) #22	ENSPFOG00000006571 #23	ENSPFOG00000006489 #24	zgc:162879 (ENSPFOG00000006354) #25	sema4ba (ENSPFOG00000006184) #26	znf710a (ENSPFOG00000006142) #27	idh2 (ENSPFOG00000005967) #28	ENSPFOG00000019898 #30	ENSPFOG00000005904 #29	RASGRF1 (ENSPFOG00000005376) #31	ctsh (ENSPFOG00000024227) #32	ENSPFOG00000005059 #33	FRMD5 (ENSPFOG00000004591) #34	ENSPFOG00000004466 #35	ENSPFOG00000004343 #36	slc28a1 (ENSPFOG00000003979) #37
Guppy	MODERN SPECIES	458	TTC23 (ENSPREG00000006235) #8	mef2aa (ENSPREG00000006266) #9	ENSPREG00000006337 #10	nr2f2 (ENSPREG00000006395) #11	lysmd4 (ENSPREG00000006409) #12	rgma (ENSPREG00000006414) #13	ENSPREG00000006419 #14	ENSPREG00000006431 #15	ENSPREG00000006449 #15	ENSPREG00000006495 #15	fam174b (ENSPREG00000006508) #17	st8sia2 (ENSPREG00000006520) #18	slco3a1a (ENSPREG00000006530) #19	si:dkeyp-59c12.1 (ENSPREG00000006561) #20	gnrhr4 (ENSPREG00000006577) #21	pex11a (ENSPREG00000006584) #22	ENSPREG00000006598 #23	ENSPREG00000006618 #24	ENSPREG00000006636	sema4ba (ENSPREG00000006649) #26	znf710a (ENSPREG00000006685) #27	idh2 (ENSPREG00000006801) #28	ENSPREG00000007550 #29	ENSPREG00000007587 #30	RASGRF1 (ENSPREG00000007601) #31	ctsh (ENSPREG00000007676) #32	ENSPREG00000007715 #33	ENSPREG00000007770 #34	ENSPREG00000007813 #35	ENSPREG00000007837 #36	slc28a1 (ENSPREG00000007866) #37
Platyfish	MODERN SPECIES	11	ENSXMAG00000025552	synm (ENSXMAG00000003710) #7	TTC23 (ENSXMAG00000003704) #8	mef2aa (ENSXMAG00000029609) #9	ENSXMAG00000009271 #10	nr2f2 (ENSXMAG00000014103) #11	lysmd4 (ENSXMAG00000002703) #12	rgma (ENSXMAG00000002704) #13	ENSXMAG00000021398 #14	chd2 (ENSXMAG00000002707) #15	fam174b (ENSXMAG00000002779) #17	st8sia2 (ENSXMAG00000002780) #18	slco3a1a (ENSXMAG00000002787) #19	si:dkeyp-59c12.1 (ENSXMAG00000021988) #20	gnrhr4 (ENSXMAG00000002815) #21	pex11a (ENSXMAG00000002819) #22	ENSXMAG00000002826 #23	ENSXMAG00000002837 #24	zgc:162879 (ENSXMAG00000002846) #25	sema4ba (ENSXMAG00000002861) #26	znf710a (ENSXMAG00000004943) #27	idh2 (ENSXMAG00000002871) #28	ENSXMAG00000020319 #30	ENSXMAG00000002886 #29	RASGRF1 (ENSXMAG00000002892) #31	ctsh (ENSXMAG00000002937) #32	ENSXMAG00000002951 #33	FRMD5 (ENSXMAG00000002966) #34	ENSXMAG00000002975 #35	ENSXMAG00000026513 #36	slc28a1 (ENSXMAG00000002988) #37
NAME_4	ANCESTRAL SPECIES	39	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f.h #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Mummichog	MODERN SPECIES	691															gnrhr4 (ENSFHEG00000022489) #21	pex11a (ENSFHEG00000022518) #22	ENSFHEG00000000684 #23	ENSFHEG00000022535 #24	zgc:162879 (ENSFHEG00000022549) #25
Sheepshead minnow	MODERN SPECIES	1096																pex11a (ENSCVAG00000014481) #22	ENSCVAG00000014490 #23	ENSCVAG00000014501 #24	zgc:162879 (ENSCVAG00000014510) #25	sema4ba (ENSCVAG00000014520) #26	znf710a (ENSCVAG00000014579) #27	idh2 (ENSCVAG00000014620) #28	ENSCVAG00000014647 #29	ENSCVAG00000000374 #30
Oryzias	ANCESTRAL SPECIES	16	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Indian medaka	MODERN SPECIES	15	igf1ra (ENSOMEG00000006084)	ENSOMEG00000006018	synm (ENSOMEG00000006009) #7	mef2aa (ENSOMEG00000005995) #9	ENSOMEG00000005933 #10	nr2f2 (ENSOMEG00000005896) #11	lysmd4 (ENSOMEG00000005874) #12	rgma (ENSOMEG00000005850) #13	ENSOMEG00000005842 #14	chd2 (ENSOMEG00000005831) #15	fam174b (ENSOMEG00000005774) #17	st8sia2 (ENSOMEG00000005755) #18	slco3a1a (ENSOMEG00000005704) #19	si:dkeyp-59c12.1 (ENSOMEG00000005648) #20	gnrhr4 (ENSOMEG00000005623) #21	pex11a (ENSOMEG00000005595) #22	ENSOMEG00000005576 #23	ENSOMEG00000005554 #24	ENSOMEG00000005518	zgc:162879 (ENSOMEG00000005503) #25	sema4ba (ENSOMEG00000023701) #26	znf710a (ENSOMEG00000023678) #27	idh2 (ENSOMEG00000023667) #28	ENSOMEG00000023659 #29	ENSOMEG00000023648 #30	RASGRF1 (ENSOMEG00000023646) #31	ctsh (ENSOMEG00000023593) #32	BLM (ENSOMEG00000023545) #33	FRMD5 (ENSOMEG00000023513) #34	ENSOMEG00000023446 #35	ENSOMEG00000023433 #36
Javanese ricefish	MODERN SPECIES	20	ENSOJAG00000020194	igf1ra (ENSOJAG00000018672)	ENSOJAG00000018615	synm (ENSOJAG00000018610) #7	mef2aa (ENSOJAG00000018536) #9	nr2f2 (ENSOJAG00000018316) #11	lysmd4 (ENSOJAG00000018302) #12	ENSOJAG00000018293 #14	rgma (ENSOJAG00000018284) #13	chd2 (ENSOJAG00000017547) #15	fam174b (ENSOJAG00000017497) #17	st8sia2 (ENSOJAG00000017474) #18	slco3a1a (ENSOJAG00000017456) #19	si:dkeyp-59c12.1 (ENSOJAG00000017451) #20	gnrhr4 (ENSOJAG00000017443) #21	pex11a (ENSOJAG00000017438) #22	ENSOJAG00000017427 #23	ENSOJAG00000017394 #24	zgc:162879 (ENSOJAG00000017325) #25	sema4ba (ENSOJAG00000017256) #26	znf710a (ENSOJAG00000017241) #27	idh2 (ENSOJAG00000016393) #28	ENSOJAG00000016304 #29	ENSOJAG00000016295 #30	RASGRF1 (ENSOJAG00000016192) #31	ctsh (ENSOJAG00000015795) #32	BLM (ENSOJAG00000014939) #33	FRMD5 (ENSOJAG00000014374) #34	ENSOJAG00000014274 #35	ENSOJAG00000014093 #36	slc28a1 (ENSOJAG00000013373) #37
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800.j #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Chinese medaka	MODERN SPECIES	766	cers3b (ENSOSIG00000016891)	cfap161 (ENSOSIG00000016893)	ENSOSIG00000016898	igf1ra (ENSOSIG00000017019)	ENSOSIG00000020627	mef2aa (ENSOSIG00000020640) #9	ENSOSIG00000020669 #10	nr2f2 (ENSOSIG00000020674) #11	lysmd4 (ENSOSIG00000020686) #12	rgma (ENSOSIG00000000692) #13	fam174b (ENSOSIG00000002991) #17	st8sia2 (ENSOSIG00000002999) #18	slco3a1a (ENSOSIG00000003005) #19	si:dkeyp-59c12.1 (ENSOSIG00000003011) #20	gnrhr4 (ENSOSIG00000003019) #21	pex11a (ENSOSIG00000003040) #22	ENSOSIG00000003046 #23	ENSOSIG00000003053 #24	ENSOSIG00000003056 #24	zgc:162879 (ENSOSIG00000003062) #25	sema4ba (ENSOSIG00000003088) #26	znf710a (ENSOSIG00000003970) #27	idh2 (ENSOSIG00000004117) #28	ENSOSIG00000008162 #29	ENSOSIG00000008171 #30	RASGRF1 (ENSOSIG00000008179) #31	ctsh (ENSOSIG00000008183) #32	BLM (ENSOSIG00000008195) #33	ENSOSIG00000008781	FRMD5 (ENSOSIG00000008787) #34	ENSOSIG00000008798 #35
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000008549	igf1ra (ENSORLG00000008532)	ENSORLG00000024147	synm (ENSORLG00000008497) #7	mef2aa (ENSORLG00000008489) #9	ENSORLG00000008458 #10	nr2f2 (ENSORLG00000008429) #11	lysmd4 (ENSORLG00000022726) #12	rgma (ENSORLG00000008413) #13	chd2 (ENSORLG00000008403) #15	fam174b (ENSORLG00000029263) #17	st8sia2 (ENSORLG00000008368) #18	slco3a1a (ENSORLG00000008355) #19	si:dkeyp-59c12.1 (ENSORLG00000008337) #20	gnrhr4 (ENSORLG00000008335) #21	pex11a (ENSORLG00000008325) #22	ENSORLG00000008312 #23	ENSORLG00000008276 #24	zgc:162879 (ENSORLG00000008266) #25	sema4ba (ENSORLG00000008247) #26	znf710a (ENSORLG00000008229) #27	idh2 (ENSORLG00000008218) #28	ENSORLG00000008160 #30	ENSORLG00000008173 #29	ENSORLG00000008149 #31	ctsh (ENSORLG00000023479) #32	blm (ENSORLG00000008110) #33	ENSORLG00000008097 #34	ENSORLG00000029933 #35	ENSORLG00000008059 #36	slc28a1 (ENSORLG00000008050) #37
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00940000174630 #14	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a.f #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37	ENSGT00940000158357
Fugu	MODERN SPECIES	21	synm (ENSTRUG00000006904) #7	TTC23 (ENSTRUG00000023832) #8	ENSTRUG00000030755	mef2aa (ENSTRUG00000020953) #9	ENSTRUG00000007374 #10	nr2f2 (ENSTRUG00000007742) #11	lysmd4 (ENSTRUG00000022031) #12	ENSTRUG00000009310 #14	rgma (ENSTRUG00000029874) #13	chd2 (ENSTRUG00000008842) #15	fam174b (ENSTRUG00000026433) #17	st8sia2 (ENSTRUG00000025194) #18	slco3a1a (ENSTRUG00000008048) #19	si:dkeyp-59c12.1 (ENSTRUG00000007908) #20	ENSTRUG00000007711 #21	pex11a (ENSTRUG00000007632) #22	ENSTRUG00000007308 #23	ENSTRUG00000032361 #24	zgc:162879 (ENSTRUG00000006893) #25	sema4ba (ENSTRUG00000006523) #26	znf710a (ENSTRUG00000006452) #27	idh2 (ENSTRUG00000006159) #28	ENSTRUG00000025663 #30	RASGRF1 (ENSTRUG00000005281) #31	ctsh (ENSTRUG00000005261) #32	ENSTRUG00000019860 #33	FRMD5 (ENSTRUG00000004866) #34	ENSTRUG00000004620 #35	ENSTRUG00000004542 #36	slc28a1 (ENSTRUG00000003627) #37	znf592 (ENSTRUG00000003360)
Tetraodon	MODERN SPECIES	4	vwf (ENSTNIG00000019224)	ANO2 (ENSTNIG00000019225)	cers3b (ENSTNIG00000019226)	cfap161 (ENSTNIG00000001175)	igf1ra (ENSTNIG00000019227)	synm (ENSTNIG00000019228) #7	TTC23 (ENSTNIG00000019229) #8	ENSTNIG00000019230 ##9	mef2aa (ENSTNIG00000019231) #9	ENSTNIG00000019232 #10	nr2f2 (ENSTNIG00000001348) #11	nr2f2 (ENSTNIG00000000166) #11	ENSTNIG00000019233	si:dkeyp-59c12.1 (ENSTNIG00000019234) #20	ENSTNIG00000019235 ##21	pex11a (ENSTNIG00000019236) #22	ENSTNIG00000019237 #23	ENSTNIG00000001294 #24	ENSTNIG00000019238 #24	zgc:162879 (ENSTNIG00000019239) #25	sema4ba (ENSTNIG00000019240) #26	idh2 (ENSTNIG00000019241) #28	ENSTNIG00000019242	ENSTNIG00000019243 #30	RASGRF1 (ENSTNIG00000019244) #31	ctsh (ENSTNIG00000019245) #32	BLM (ENSTNIG00000019246) #33	FRMD5 (ENSTNIG00000019247) #34	ENSTNIG00000019248 #35	ENSTNIG00000019249 #36	slc28a1 (ENSTNIG00000019250) #37
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Ballan wrasse	MODERN SPECIES	546															gnrhr4 (ENSLBEG00000006912) #21	pex11a (ENSLBEG00000006900) #22	ENSLBEG00000006870 #23	ENSLBEG00000006815 #24	zgc:162879 (ENSLBEG00000006690) #25	sema4ba (ENSLBEG00000006639) #26	znf710a (ENSLBEG00000006594) #27	idh2 (ENSLBEG00000006568) #28	ENSLBEG00000006510 #29
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Perciformes	ANCESTRAL SPECIES	7	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000156682.e.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37	ENSGT00940000158357
Lumpfish	MODERN SPECIES	21	igf1ra (ENSCLMG00005011440)	synm (ENSCLMG00005011314) #7	TTC23 (ENSCLMG00005011312) #8	mef2aa (ENSCLMG00005011302) #9	ENSCLMG00005011300 #10	nr2f2 (ENSCLMG00005011191) #11	lysmd4 (ENSCLMG00005011187) #12	rgma (ENSCLMG00005011186) #13	ENSCLMG00005011185 #14	chd2 (ENSCLMG00005010810) #15	fam174b (ENSCLMG00005010805) #17	st8sia2 (ENSCLMG00005010804) #18	slco3a1a (ENSCLMG00005010803) #19	si:dkeyp-59c12.1 (ENSCLMG00005010802) #20	ENSCLMG00005010801 #21	pex11a (ENSCLMG00005010800) #22	ENSCLMG00005010799 #23	ENSCLMG00005010797 #24	zgc:162879 (ENSCLMG00005010795) #25	sema4ba (ENSCLMG00005010793) #26	znf710a (ENSCLMG00005010792) #27	idh2 (ENSCLMG00005008548) #28	ENSCLMG00005008529 #29	ENSCLMG00005008528 #30	RASGRF1 (ENSCLMG00005008519) #31	BLM (ENSCLMG00005007349) #33	ENSCLMG00005007337 #34	ENSCLMG00005007334 #35	ENSCLMG00005007329 #36	slc28a1 (ENSCLMG00005007325) #37	znf592 (ENSCLMG00005007323)
Stickleback	MODERN SPECIES	14	roraa (ENSGACG00000010672)	ICE2 (ENSGACG00000010682)	anxa2a (ENSGACG00000010689)	foxb1a (ENSGACG00000010700)	bnip2 (ENSGACG00000010705)	GCNT3 (ENSGACG00000010725)	GCNT3 (ENSGACG00000010729)	ENSGACG00000010732	OTUD7A (ENSGACG00000010734)	klf13 (ENSGACG00000010739)	fam174b (ENSGACG00000010742) #17	st8sia2 (ENSGACG00000010746) #18	slco3a1a (ENSGACG00000010749) #19	si:dkeyp-59c12.1 (ENSGACG00000010758) #20	gnrhr4 (ENSGACG00000010762) #21	pex11a (ENSGACG00000010771) #22	ENSGACG00000010775 #23	ENSGACG00000010785 #24	zgc:162879 (ENSGACG00000010798) #25	sema4ba (ENSGACG00000010807) #26	znf710a (ENSGACG00000010823) #27	idh2 (ENSGACG00000010827) #28	ENSGACG00000010857 #30	RASGRF1 (ENSGACG00000010861) #31	BLM (ENSGACG00000010863) #33	FRMD5 (ENSGACG00000010873) #34	ENSGACG00000010891 #35	ENSGACG00000010898 #36	slc28a1 (ENSGACG00000010911) #37	znf592 (ENSGACG00000010936)	agbl2 (ENSGACG00000010944)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Channel bull blenny	MODERN SPECIES	20	igf1ra (ENSCGOG00000004785)	ENSCGOG00000009411	ENSCGOG00000009416 #7	TTC23 (ENSCGOG00000009420) #8	mef2aa (ENSCGOG00000009429) #9	ENSCGOG00000009520 #10	nr2f2 (ENSCGOG00000009537) #11	lysmd4 (ENSCGOG00000009587) #12	rgma (ENSCGOG00000009589) #13	chd2 (ENSCGOG00000009639) #15	fam174b (ENSCGOG00000011366) #17	st8sia2 (ENSCGOG00000011367) #18	slco3a1a (ENSCGOG00000011372) #19	si:dkeyp-59c12.1 (ENSCGOG00000011400) #20	gnrhr4 (ENSCGOG00000011403) #21	pex11a (ENSCGOG00000011405) #22	ENSCGOG00000011410 #23	ENSCGOG00000011418 #24	zgc:162879 (ENSCGOG00000011419) #25	sema4ba (ENSCGOG00000011422) #26	znf710a (ENSCGOG00000011450) #27	idh2 (ENSCGOG00000011490) #28	ENSCGOG00000013605 #29	ENSCGOG00000013607 #30	RASGRF1 (ENSCGOG00000013624) #31	ctsh (ENSCGOG00000014591) #32	BLM (ENSCGOG00000015009) #33	FRMD5 (ENSCGOG00000015184) #34	ENSCGOG00000015439	ENSCGOG00000015441	ENSCGOG00000015446 #35
Pike perch	MODERN SPECIES	6						nr2f2 (ENSSLUG00000004732) #11	lysmd4 (ENSSLUG00000004800) #12	rgma (ENSSLUG00000004803) #13	ENSSLUG00000004808 #14	chd2 (ENSSLUG00000004931) #15	fam174b (ENSSLUG00000007234) #17	st8sia2 (ENSSLUG00000007242) #18	slco3a1a (ENSSLUG00000007254) #19	si:dkeyp-59c12.1 (ENSSLUG00000007262) #20	ENSSLUG00000007268 #21	pex11a (ENSSLUG00000007286) #22	ENSSLUG00000007293 #23	zgc:162879 (ENSSLUG00000007303) #25	sema4ba (ENSSLUG00000007335) #26	znf710a (ENSSLUG00000007368) #27	idh2 (ENSSLUG00000007447) #28	ENSSLUG00000008614 #30	RASGRF1 (ENSSLUG00000008647) #31	ctsh (ENSSLUG00000008729) #32	BLM (ENSSLUG00000009054) #33	FRMD5 (ENSSLUG00000009330) #34	ENSSLUG00000009336 #35	ENSSLUG00000009342 #36	slc28a1 (ENSSLUG00000009360) #37	ENSSLUG00000009750	ENSSLUG00000009752
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Gilthead seabream	MODERN SPECIES	22	PGPEP1L (ENSSAUG00010017586)	synm (ENSSAUG00010017588) #7	TTC23 (ENSSAUG00010017590) #8	mef2aa (ENSSAUG00010017596) #9	ENSSAUG00010017611 #10	nr2f2 (ENSSAUG00010017619) #11	lysmd4 (ENSSAUG00010017679) #12	rgma (ENSSAUG00010017683) #13	ENSSAUG00010017686 #14	chd2 (ENSSAUG00010017697) #15	fam174b (ENSSAUG00010019437) #17	st8sia2 (ENSSAUG00010019441) #18	slco3a1a (ENSSAUG00010019447) #19	si:dkeyp-59c12.1 (ENSSAUG00010019452) #20	gnrhr4 (ENSSAUG00010019454) #21	pex11a (ENSSAUG00010019457) #22	ENSSAUG00010019455 #24	ENSSAUG00010019461 #23	zgc:162879 (ENSSAUG00010019464) #25	sema4ba (ENSSAUG00010019479) #26	znf710a (ENSSAUG00010019608) #27	idh2 (ENSSAUG00010019613) #28	ENSSAUG00010021006 #29	ENSSAUG00010021007 #30	RASGRF1 (ENSSAUG00010021009) #31	ctsh (ENSSAUG00010021061) #32	ENSSAUG00010021147 #33	FRMD5 (ENSSAUG00010021333) #34	ENSSAUG00010021335 #35	ENSSAUG00010021337 #36	slc28a1 (ENSSAUG00010021340) #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
European seabass	MODERN SPECIES	19	PGPEP1L (ENSDLAG00005005911)	ENSDLAG00005005925	TTC23 (ENSDLAG00005029088) #8	mef2aa (ENSDLAG00005005967) #9	ENSDLAG00005006109 #10	nr2f2 (ENSDLAG00005006290) #11	lysmd4 (ENSDLAG00005006413) #12	rgma (ENSDLAG00005034032) #13	ENSDLAG00005006435 #14	chd2 (ENSDLAG00005006606) #15	fam174b (ENSDLAG00005032009) #17	st8sia2 (ENSDLAG00005010256) #18	slco3a1a (ENSDLAG00005010267) #19	si:dkeyp-59c12.1 (ENSDLAG00005010307) #20	ENSDLAG00005010318 #21	pex11a (ENSDLAG00005027327) #22	ENSDLAG00005010358 #23	ENSDLAG00005010372 #24	zgc:162879 (ENSDLAG00005010385) #25	sema4ba (ENSDLAG00005010467) #26	znf710a (ENSDLAG00005010547) #27	idh2 (ENSDLAG00005010584) #28	ENSDLAG00005011539 #29	ENSDLAG00005011551 #30	ENSDLAG00005011593 #31	ctsh (ENSDLAG00005034832) #32	ENSDLAG00005013079 #33	ENSDLAG00005013193 #34	ENSDLAG00005013246 #35	ENSDLAG00005013267 #37	znf592 (ENSDLAG00005013299)
Large yellow croaker	MODERN SPECIES	492	PGPEP1L (ENSLCRG00005022841)	synm (ENSLCRG00005022839) #7	TTC23 (ENSLCRG00005022837) #8	mef2aa (ENSLCRG00005022836) #9	ENSLCRG00005022834 #10	nr2f2 (ENSLCRG00005022833) #11	lysmd4 (ENSLCRG00005022831) #12	ENSLCRG00005022829 #14	rgma (ENSLCRG00005022828) #13	chd2 (ENSLCRG00005021750) #15	fam174b (ENSLCRG00005021722) #17	st8sia2 (ENSLCRG00005021721) #18	slco3a1a (ENSLCRG00005021719) #19	si:dkeyp-59c12.1 (ENSLCRG00005021713) #20	gnrhr4 (ENSLCRG00005021712) #21	pex11a (ENSLCRG00005021710) #22	ENSLCRG00005021708 #23	ENSLCRG00005021706 #24	zgc:162879 (ENSLCRG00005021703) #25	sema4ba (ENSLCRG00005021688) #26	znf710a (ENSLCRG00005021681) #27	idh2 (ENSLCRG00005021227) #28	ENSLCRG00005021214 #29	ENSLCRG00005021213 #30	RASGRF1 (ENSLCRG00005020963) #31	ctsh (ENSLCRG00005020855) #32	ENSLCRG00005020639 #33	FRMD5 (ENSLCRG00005020628) #34	ENSLCRG00005020625 #35	ENSLCRG00005020623 #36	slc28a1 (ENSLCRG00005020508) #37
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Zig-zag eel	MODERN SPECIES	20	TTC23 (ENSMAMG00000009502) #8	mef2aa (ENSMAMG00000009369) #9	ENSMAMG00000009351 #10	nr2f2 (ENSMAMG00000009329) #11	lysmd4 (ENSMAMG00000027150) #12	rgma (ENSMAMG00000009316) #13	ENSMAMG00000027194 #14	chd2 (ENSMAMG00000009082) #15	fam174b (ENSMAMG00000024575) #17	st8sia2 (ENSMAMG00000009044) #18	slco3a1a (ENSMAMG00000009001) #19	si:dkeyp-59c12.1 (ENSMAMG00000008987) #20	ENSMAMG00000028168 #21	ENSMAMG00000027074	ENSMAMG00000008945	pex11a (ENSMAMG00000008934) #22	ENSMAMG00000008917 #23	ENSMAMG00000024897 #23	ENSMAMG00000008908 #24	zgc:162879 (ENSMAMG00000008875) #25	sema4ba (ENSMAMG00000008846) #26	znf710a (ENSMAMG00000008834) #27	idh2 (ENSMAMG00000008807) #28	ENSMAMG00000008801 #30	ENSMAMG00000008753 #31	ctsh (ENSMAMG00000008738) #32	ENSMAMG00000008726 #33	ENSMAMG00000008670 #34	ENSMAMG00000008641 #35	ENSMAMG00000008604 #36	ENSMAMG00000008562 #37
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00980000202314	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Climbing perch	MODERN SPECIES	19	ENSATEG00000005043	synm (ENSATEG00000005115) #7	TTC23 (ENSATEG00000005128) #8	mef2aa (ENSATEG00000005135) #9	ENSATEG00000005182 #10	nr2f2 (ENSATEG00000003471) #11	lysmd4 (ENSATEG00000005221) #12	rgma (ENSATEG00000005223) #13	ENSATEG00000005225 #14	chd2 (ENSATEG00000005246) #15	fam174b (ENSATEG00000005411) #17	st8sia2 (ENSATEG00000005428) #18	slco3a1a (ENSATEG00000005441) #19	si:dkeyp-59c12.1 (ENSATEG00000005496) #20	ENSATEG00000005541 #21	pex11a (ENSATEG00000006047) #22	ENSATEG00000006067 #23	ENSATEG00000006095 #24	zgc:162879 (ENSATEG00000006102) #25	sema4ba (ENSATEG00000006115) #26	znf710a (ENSATEG00000006126) #27	idh2 (ENSATEG00000006165) #28	ENSATEG00000006230 #30	ENSATEG00000006250 #31	ctsh (ENSATEG00000006366) #32	ENSATEG00000006421 #33	ENSATEG00000006444 #34	ENSATEG00000026538	ENSATEG00000006523 #35	ENSATEG00000006530 #36	ENSATEG00000006546 #37
Siamese fighting fish	MODERN SPECIES	17	ENSBSLG00000018710	TTC23 (ENSBSLG00000018713) #8	mef2aa (ENSBSLG00000018715) #9	ENSBSLG00000018786 #10	ENSBSLG00000019192	nr2f2 (ENSBSLG00000019419) #11	lysmd4 (ENSBSLG00000019500) #12	rgma (ENSBSLG00000019763) #13	ENSBSLG00000019790 #14	chd2 (ENSBSLG00000019945) #15	fam174b (ENSBSLG00000020580) #17	st8sia2 (ENSBSLG00000020583) #18	slco3a1a (ENSBSLG00000021065) #19	si:dkeyp-59c12.1 (ENSBSLG00000021172) #20	gnrhr4 (ENSBSLG00000021190) #21	pex11a (ENSBSLG00000021219) #22	ENSBSLG00000021257 #23	ENSBSLG00000021333 #24	zgc:162879 (ENSBSLG00000021349) #25	sema4ba (ENSBSLG00000021451) #26	znf710a (ENSBSLG00000021665) #27	idh2 (ENSBSLG00000021688) #28	ENSBSLG00000022307 #30	RASGRF1 (ENSBSLG00000022397) #31	ctsh (ENSBSLG00000022657) #32	BLM (ENSBSLG00000023202) #33	FRMD5 (ENSBSLG00000023515) #34	ENSBSLG00000023715 #35	ENSBSLG00000023721 #36	slc28a1 (ENSBSLG00000023747) #37	znf592 (ENSBSLG00000023813)
Carangaria	ANCESTRAL SPECIES	6	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37	ENSGT00940000158357
Turbot	MODERN SPECIES	1	igf1ra (ENSSMAG00000002101)	ENSSMAG00000002044	synm (ENSSMAG00000002028) #7	mef2aa (ENSSMAG00000001961) #9	ENSSMAG00000001909 #10	ENSSMAG00000024931	nr2f2 (ENSSMAG00000001895) #11	lysmd4 (ENSSMAG00000001890) #12	rgma (ENSSMAG00000001869) #13	chd2 (ENSSMAG00000001726) #15	fam174b (ENSSMAG00000034579) #17	st8sia2 (ENSSMAG00000001692) #18	slco3a1a (ENSSMAG00000001670) #19	si:dkeyp-59c12.1 (ENSSMAG00000001651) #20	ENSSMAG00000001642 #21	pex11a (ENSSMAG00000001636) #22	ENSSMAG00000001611 #23	ENSSMAG00000001588 #24	zgc:162879 (ENSSMAG00000001513) #25	sema4ba (ENSSMAG00000001477) #26	znf710a (ENSSMAG00000001450) #27	idh2 (ENSSMAG00000001429) #28	ENSSMAG00000001426 #30	ENSSMAG00000001289 #31	ctsh (ENSSMAG00000001156) #32	ENSSMAG00000001120 #33	ENSSMAG00000001045 #34	ENSSMAG00000000995 #35	ENSSMAG00000025244 #36	ENSSMAG00000000944 #36	ENSSMAG00000000909 #37
Tongue sole	MODERN SPECIES	16	klhdc4 (ENSCSEG00000013965)	slc7a5 (ENSCSEG00000013947)	ca5a (ENSCSEG00000013942)	uba2 (ENSCSEG00000013918)	lcat (ENSCSEG00000013904)	pla2g15 (ENSCSEG00000013889)	usb1 (ENSCSEG00000013881)	ZNF319 (ENSCSEG00000013879)	CSNK2A2 (ENSCSEG00000013854)	ENSCSEG00000013848	fa2h (ENSCSEG00000013832)	ano10b (ENSCSEG00000013801)	snrkb (ENSCSEG00000013790)	ENSCSEG00000013787	gnrhr4 (ENSCSEG00000013740) #21	pex11a (ENSCSEG00000013733) #22	ENSCSEG00000013732 #23	ENSCSEG00000013722 #24	zgc:162879 (ENSCSEG00000013699) #25	sema4ba (ENSCSEG00000013664) #26	znf710a (ENSCSEG00000013650) #27	ENSCSEG00000013642 #30	idh2 (ENSCSEG00000013578) #28	RASGRF1 (ENSCSEG00000013532) #31	ctsh (ENSCSEG00000013517) #32	BLM (ENSCSEG00000013483) #33	FRMD5 (ENSCSEG00000013415) #34	ENSCSEG00000013397 #35	ENSCSEG00000013370 #36	slc28a1 (ENSCSEG00000013344) #37	znf592 (ENSCSEG00000013318)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Seriola	ANCESTRAL SPECIES	5	ENSGT00390000015368.a.b	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.f.b #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Greater amberjack	MODERN SPECIES	82	PGPEP1L (ENSSDUG00000012180)	synm (ENSSDUG00000012177) #7	TTC23 (ENSSDUG00000012169) #8	mef2aa (ENSSDUG00000012126) #9	MCTP2 (ENSSDUG00000012092) #10	nr2f2 (ENSSDUG00000012075) #11	lysmd4 (ENSSDUG00000012056) #12	rgma (ENSSDUG00000012034) #13	ENSSDUG00000012025 #14	chd2 (ENSSDUG00000011962) #15	fam174b (ENSSDUG00000011946) #17	st8sia2 (ENSSDUG00000011877) #18	slco3a1a (ENSSDUG00000011820) #19	si:dkeyp-59c12.1 (ENSSDUG00000011812) #20	gnrhr4 (ENSSDUG00000011599) #21	pex11a (ENSSDUG00000011540) #22	ENSSDUG00000011521 #23	ENSSDUG00000011503 #24	zgc:162879 (ENSSDUG00000011478) #25	sema4ba (ENSSDUG00000011456) #26	idh2 (ENSSDUG00000011184) #28	znf710a (ENSSDUG00000011142) #27	idh2 (ENSSDUG00000011097) #28	ENSSDUG00000011077 #29	ENSSDUG00000011069 #30	RASGRF1 (ENSSDUG00000011011) #31	ctsh (ENSSDUG00000010987) #32	ENSSDUG00000010955 #33	FRMD5 (ENSSDUG00000010904) #34	ENSSDUG00000010852 #35	ENSSDUG00000010790 #36
Yellowtail amberjack	MODERN SPECIES	3044						nr2f2 (ENSSLDG00000001337) #11	lysmd4 (ENSSLDG00000001320) #12	ENSSLDG00000001308 #14	rgma (ENSSLDG00000001279) #13	chd2 (ENSSLDG00000001146) #15	fam174b (ENSSLDG00000001123) #17	st8sia2 (ENSSLDG00000001087) #18	slco3a1a (ENSSLDG00000001038) #19	si:dkeyp-59c12.1 (ENSSLDG00000001033) #20	gnrhr4 (ENSSLDG00000001021) #21	pex11a (ENSSLDG00000001009) #22	ENSSLDG00000000993 #23	ENSSLDG00000000952 #24	zgc:162879 (ENSSLDG00000000877) #25	sema4ba (ENSSLDG00000000854) #26	znf710a (ENSSLDG00000000824) #27	idh2 (ENSSLDG00000000816) #28	ENSSLDG00000000810 #30	ENSSLDG00000000801 #29	RASGRF1 (ENSSLDG00000000687) #31	ctsh (ENSSLDG00000000645) #32	ENSSLDG00000000634 #33	FRMD5 (ENSSLDG00000000554) #34	ENSSLDG00000000546 #35	ENSSLDG00000000513 #36	slc28a1 (ENSSLDG00000000353) #37
Barramundi perch	MODERN SPECIES	97	PGPEP1L (ENSLCAG00010006729)	synm (ENSLCAG00010006725) #7	TTC23 (ENSLCAG00010006718) #8	mef2aa (ENSLCAG00010006701) #9	ENSLCAG00010006673 #10	nr2f2 (ENSLCAG00010006634) #11	lysmd4 (ENSLCAG00010006616) #12	ENSLCAG00010006609 #14	rgma (ENSLCAG00010006607) #13	chd2 (ENSLCAG00010006020) #15	fam174b (ENSLCAG00010005886) #17	st8sia2 (ENSLCAG00010005877) #18	slco3a1a (ENSLCAG00010005867) #19	si:dkeyp-59c12.1 (ENSLCAG00010005862) #20	gnrhr4 (ENSLCAG00010005856) #21	pex11a (ENSLCAG00010005853) #22	ENSLCAG00010005848 #23	ENSLCAG00010005841 #24	zgc:162879 (ENSLCAG00010005831) #25	sema4ba (ENSLCAG00010005820) #26	znf710a (ENSLCAG00010005813) #27	idh2 (ENSLCAG00010005797) #28	ENSLCAG00010005791 #29	ENSLCAG00010005786 #30	RASGRF1 (ENSLCAG00010005287) #31	ctsh (ENSLCAG00010005116) #32	ENSLCAG00010005093 #33	FRMD5 (ENSLCAG00010005072) #34	ENSLCAG00010005059 #35	ENSLCAG00010005050 #36	slc28a1 (ENSLCAG00010005040) #37
Pinecone sodierfish	MODERN SPECIES	20	ENSMMDG00005013265	synm (ENSMMDG00005013262) #7	ENSMMDG00005013143 #8	mef2aa (ENSMMDG00005012981) #9	MCTP2 (ENSMMDG00005012971) #10	nr2f2 (ENSMMDG00005012931) #11	lysmd4 (ENSMMDG00005012929) #12	ENSMMDG00005012928 #14	rgma (ENSMMDG00005012926) #13	chd2 (ENSMMDG00005002091) #15	fam174b (ENSMMDG00005001801) #17	st8sia2 (ENSMMDG00005001790) #18	slco3a1a (ENSMMDG00005001781) #19	si:dkeyp-59c12.1 (ENSMMDG00005001765) #20	gnrhr4 (ENSMMDG00005001760) #21	pex11a (ENSMMDG00005001753) #22	ENSMMDG00005001751 #23	ENSMMDG00005001741 #24	zgc:162879 (ENSMMDG00005001728) #25	sema4ba (ENSMMDG00005001718) #26	znf710a (ENSMMDG00005001714) #27	idh2 (ENSMMDG00005000828) #28	ENSMMDG00005000770 #29	ENSMMDG00005000769 #30	RASGRF1 (ENSMMDG00005000764) #31	ctsh (ENSMMDG00005000723) #32	ENSMMDG00005000284 #33	FRMD5 (ENSMMDG00005015691) #34	ENSMMDG00005015679 #35	ENSMMDG00005015675 #36	slc28a1 (ENSMMDG00005014889) #37
Cod	MODERN SPECIES	22	ENSGMOG00000023120	igf1ra (ENSGMOG00000015335)	ENSGMOG00000015381 #7	ENSGMOG00000026749 #8	mef2aa (ENSGMOG00000015431) #9	ENSGMOG00000032612 #10	nr2f2 (ENSGMOG00000015515) #11	lysmd4 (ENSGMOG00000026827) #12	rgma (ENSGMOG00000032458) #13	chd2 (ENSGMOG00000002890) #15	ENSGMOG00000034902	fam174b (ENSGMOG00000023113) #17	st8sia2 (ENSGMOG00000013018) #18	slco3a1a (ENSGMOG00000013029) #19	ENSGMOG00000013043 #21	pex11a (ENSGMOG00000025865) #22	ENSGMOG00000013055 #23	ENSGMOG00000013077 #24	zgc:162879 (ENSGMOG00000013096) #25	sema4ba (ENSGMOG00000013124) #26	znf710a (ENSGMOG00000029537) #27	idh2 (ENSGMOG00000013141) #28	ENSGMOG00000023312 #30	ENSGMOG00000016711 #31	ENSGMOG00000016431 #33	ENSGMOG00000016413 #34	ENSGMOG00000016300 #35	ENSGMOG00000006486 #36	ENSGMOG00000006500 #37	ENSGMOG00000023687	ENSGMOG00000006602
Protacanthopterygii	ANCESTRAL SPECIES	45	ENSGT00620000087961.b	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000158437	ENSGT00940000158203	ENSGT00940000156681	ENSGT01030000234595.B.c.b	ENSGT00940000154983.c.a	ENSGT00390000011228.b.b	ENSGT01020000230354.A.b	ENSGT00690000103052	ENSGT00390000005075	ENSGT00940000160687	ENSGT00940000156041.d	ENSGT00660000097187	ENSGT00940000156878.i.b.a.b	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.a.a ##24	ENSGT01000000215232	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a.e ##28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227.g #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Salmoninae	ANCESTRAL SPECIES	71	ENSGT00940000158437.f	ENSGT00940000158203.g	ENSGT00940000156681.n	ENSGT01030000234595.B.c.b.k.a	ENSGT00940000154983.c.a.c	ENSGT00390000011228.b.b.n	ENSGT00390000005075.i	ENSGT01100000263529.a.a.a.b.a.a.a.e.b	ENSGT00690000103052	ENSGT00390000005075.j	ENSGT00940000160687	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000156041.d	ENSGT00660000097187.c	ENSGT00940000156878.i.b.a.b.d	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.r #23	ENSGT00940000165481.a.a ##24	ENSGT01000000215232.a	ENSGT00940000165251.c #25	ENSGT00940000154870.D.a.a.c #26	ENSGT00940000161170.d.c #27	ENSGT00390000012547.a.e.a ##28	ENSGT00390000012355.B.a.f #30	ENSGT00940000157599.c.a.c #31	ENSGT00940000160227.g.b #32	ENSGT00940000156346.c.b.n.b #34	ENSGT00390000018044.a.f #35	ENSGT00940000158534.a.b.o #36
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000158203.g	ENSGT00940000156681.n	ENSGT01030000234595.B.c.b.k.a	ENSGT00940000154983.c.a.c	ENSGT00390000011228.b.b.n	ENSGT00940000160206.e.f.b	ENSGT01020000230354.A.b.m.b	ENSGT01100000263529.a.a.a.b.a.a.a.e.b	ENSGT00690000103052	ENSGT00390000005075.j	ENSGT00940000160687	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000156041.d	ENSGT00660000097187.c	ENSGT00940000156878.i.b.a.b.d	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.r #23	ENSGT00940000165481.a.a ##24	ENSGT01000000215232.a	ENSGT00940000165251.c #25	ENSGT00940000154870.D.a.a.c #26	ENSGT00940000161170.d.c #27	ENSGT00390000012547.a.e.a ##28	ENSGT00390000012355.B.a.f #30	ENSGT00940000157599.c.a.c #31	ENSGT00940000160227.g.b #32	ENSGT00940000156346.c.b.n.b #34	ENSGT00390000018044.a.f #35	ENSGT00940000158534.a.b.o #36	ENSGT00940000163793.A.b.j	ENSGT00940000154954.nb.a.d
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000158203.g	ENSGT00940000156681.n	ENSGT01030000234595.B.c.b.k.a	ENSGT00940000154983.c.a.c	ENSGT00390000011228.b.b.n	ENSGT00940000160206.e.f.b	ENSGT01020000230354.A.b.m.b	ENSGT01100000263529.a.a.a.b.a.a.a.e.b	ENSGT00690000103052	ENSGT00390000005075.j	ENSGT00940000160687	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000156041.d	ENSGT00660000097187.c	ENSGT00940000156878.i.b.a.b.d	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.r #23	ENSGT00940000165481.a.a ##24	ENSGT01000000215232.a	ENSGT00940000165251.c #25	ENSGT00940000154870.D.a.a.c.a.a #26	ENSGT00940000161170.d.c #27	ENSGT00390000012547.a.e.a ##28	ENSGT00390000012355.B.a.f #30	ENSGT00940000157599.c.a.c #31	ENSGT01000000221756	ENSGT00940000156346.c.b.n.b #34	ENSGT00390000018044.a.f #35	ENSGT00940000158534.a.b.o #36	ENSGT00940000163793.A.b.j	ENSGT00940000154954.nb.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000158203.g	ENSGT00940000156681.n	ENSGT01030000234595.B.c.b.k.a	ENSGT00940000154983.c.a.c	ENSGT00390000011228.b.b.n	ENSGT00940000160206.e.f.b	ENSGT01020000230354.A.b.m.b	ENSGT01100000263529.a.a.a.b.a.a.a.e.b	ENSGT00690000103052	ENSGT00390000005075.j	ENSGT00940000160687	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000156041.d	ENSGT00660000097187.c	ENSGT00940000156878.i.b.a.b.d	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.r #23	ENSGT00940000165481.a.a ##24	ENSGT01000000215232.a	ENSGT00940000165251.c #25	ENSGT00940000154870.D.a.a.c.a.a #26	ENSGT00940000161170.d.c #27	ENSGT00390000012547.a.e.a ##28	ENSGT00390000012355.B.a.f #30	ENSGT00940000157599.c.a.c #31	ENSGT00940000156346.c.b.n.b #34	ENSGT00390000018044.a.f #35	ENSGT00940000158534.a.b.o #36	ENSGT00940000163793.A.b.j	ENSGT00940000154954.nb.a.d	ENSGT00940000156932.b.c
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2903	sema3d (ENSOTSG00005028205)	grm3 (ENSOTSG00005029173)	elapor2a (ENSOTSG00005029190)	fam107b (ENSOTSG00005029684)	ENSOTSG00005029685	ENSOTSG00005029687	frmd4a (ENSOTSG00005029688)	ENSOTSG00005029690	si:dkey-30c15.13 (ENSOTSG00005029691)	ENSOTSG00005029692	pdp2 (ENSOTSG00005029693)	ENSOTSG00005029694	ENSOTSG00005029695	ENSOTSG00005029700	ENSOTSG00005029701	pex11a (ENSOTSG00005029704) #22	ENSOTSG00005029705 #23	ENSOTSG00005029706 ##24	ENSOTSG00005029707	zgc:162879 (ENSOTSG00005029708) #25	sema4ba (ENSOTSG00005029709) #26	znf710a (ENSOTSG00005029710) #27	idh2 (ENSOTSG00005029713) ##28	ENSOTSG00005030786 #30	RASGRF1 (ENSOTSG00005030789) #31
Chinook salmon	MODERN SPECIES	30	sema3d (ENSOTSG00005028773)	grm3 (ENSOTSG00005028769)	elapor2a (ENSOTSG00005028758)	fam107b (ENSOTSG00005028753)	ENSOTSG00005028742	ENSOTSG00005028667	frmd4a (ENSOTSG00005044164)	ENSOTSG00005044160	si:dkey-30c15.13 (ENSOTSG00005044158)	ENSOTSG00005044153	pdp2 (ENSOTSG00005044151)	ENSOTSG00005044147	ENSOTSG00005044143	ENSOTSG00005044140	ARF5 (ENSOTSG00005044138)	pex11a (ENSOTSG00005044136) #22	ENSOTSG00005044135 #23	ENSOTSG00005044132 ##24	ENSOTSG00005044130	zgc:162879 (ENSOTSG00005044129) #25	sema4ba (ENSOTSG00005044128) #26	znf710a (ENSOTSG00005044126) #27	idh2 (ENSOTSG00005043762) ##28	ENSOTSG00005043754 #30	RASGRF1 (ENSOTSG00005043523) #31	FRMD5 (ENSOTSG00005043507) #34	ENSOTSG00005043505 #35	ENSOTSG00005043504 #36	ENSOTSG00005043503	ch25hl1.1 (ENSOTSG00005043502)	tspan3a (ENSOTSG00005043501)
Coho salmon	MODERN SPECIES	24	sema3d (ENSOKIG00005022896)	grm3 (ENSOKIG00005022568)	elapor2a (ENSOKIG00005021902)	ENSOKIG00005021821	ENSOKIG00005021744	FRMD4A (ENSOKIG00005021509)	ENSOKIG00005021435	si:dkey-30c15.13 (ENSOKIG00005021424)	ENSOKIG00005021413	pdp2 (ENSOKIG00005021356)	ENSOKIG00005021340	NETO2 (ENSOKIG00005021102)	ENSOKIG00005021086	ENSOKIG00005021081	ARF5 (ENSOKIG00005021020)	pex11a (ENSOKIG00005021001) #22	ENSOKIG00005020971 #23	ENSOKIG00005020933	ENSOKIG00005020902 ##24	zgc:162879 (ENSOKIG00005020813) #25	sema4ba (ENSOKIG00005020719) #26	ENSOKIG00005020705	znf710a (ENSOKIG00005020695) #27	idh2 (ENSOKIG00005019136) ##28	ENSOKIG00005019045 #30	RASGRF1 (ENSOKIG00005018708) #31	FRMD5 (ENSOKIG00005018535) #34	ALPK3 (ENSOKIG00005018497) #36	ENSOKIG00005018488	ENSOKIG00005018479	pstpip1a (ENSOKIG00005018451)
Rainbow trout	MODERN SPECIES		grm3 (ENSOMYG00000004532)	elapor2a (ENSOMYG00000003439)	ENSOMYG00000074576	ENSOMYG00000002760	ENSOMYG00000002717	ENSOMYG00000002638	ENSOMYG00000065966	ENSOMYG00000002601	ENSOMYG00000002505	ENSOMYG00000002460	ENSOMYG00000002439	ENSOMYG00000002388	ENSOMYG00000002337	ENSOMYG00000002191	ENSOMYG00000002174	pex11a (ENSOMYG00000002140) #22	ENSOMYG00000002131 #23	ENSOMYG00000002057 ##24	ENSOMYG00000002093	zgc:162879 (ENSOMYG00000001790) #25	sema4ba (ENSOMYG00000001650) #26	znf710a (ENSOMYG00000001517) #27	idh2 (ENSOMYG00000001038) ##28	ENSOMYG00000051170	ENSOMYG00000000703 #31	ENSOMYG00000000534	ENSOMYG00000000456 #34	ENSOMYG00000000315 #35	ENSOMYG00000000274 #36	ENSOMYG00000000257	ENSOMYG00000000240
Salmo	ANCESTRAL SPECIES	9	ENSGT00940000156681.n	ENSGT01030000234595.B.c.b.k.a	ENSGT00940000154983.c.a.c	ENSGT00390000011228.b.b.n	ENSGT00940000160206.e.f.b	ENSGT01020000230354.A.b.m.b	ENSGT01100000263529.a.a.a.b.a.a.a.e.b.c	ENSGT01100000263529.a.a.a.b.a.a.a.e.b.d	ENSGT00690000103052	ENSGT00390000005075.j	ENSGT00940000160687	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.b	ENSGT00940000156041.d	ENSGT00660000097187.c	ENSGT00940000156878.i.b.a.b.d	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.r #23	ENSGT00940000165481.a.a ##24	ENSGT01000000215232.a	ENSGT00940000165251.c #25	ENSGT00940000154870.D.a.a.c #26	ENSGT00940000161170.d.c #27	ENSGT00390000012547.a.e.a ##28	ENSGT00390000012355.B.a.f #30	ENSGT00940000157599.c.a.c #31	ENSGT00940000160227.g.b #32	ENSGT00940000156346.c.b.n.b #34	ENSGT00390000018044.a.f #35	ENSGT00940000158534.a.b.o #36	ENSGT00940000163793.A.b.j	ENSGT00940000154954.nb.a.d
River trout	MODERN SPECIES	8	elapor2a (ENSSTUG00000031017)	fam107b (ENSSTUG00000030990)	ENSSTUG00000030988	ENSSTUG00000030985	ENSSTUG00000030919	ENSSTUG00000030914	frmd4a (ENSSTUG00000030866)	ENSSTUG00000030845	si:dkey-30c15.13 (ENSSTUG00000030836)	ENSSTUG00000030817	pdp2 (ENSSTUG00000030791)	ENSSTUG00000030762	si:dkey-30c15.2 (ENSSTUG00000030754)	ENSSTUG00000030749	ARF5 (ENSSTUG00000030706)	pex11a (ENSSTUG00000030700) #22	ENSSTUG00000030689 #23	ENSSTUG00000030682 ##24	ENSSTUG00000030652	zgc:162879 (ENSSTUG00000030639) #25	sema4ba (ENSSTUG00000030476) #26	znf710a (ENSSTUG00000030465) #27	idh2 (ENSSTUG00000028358) ##28	ENSSTUG00000028312 #30	RASGRF1 (ENSSTUG00000027866) #31	ctsh (ENSSTUG00000027624) #32	FRMD5 (ENSSTUG00000027304) #34	ENSSTUG00000027248 #35	ENSSTUG00000027228 #36	ENSSTUG00000027217	ch25hl1.1 (ENSSTUG00000027211)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000006140	ENSSSAG00000051489	ENSSSAG00000104466	ENSSSAG00000023022	ENSSSAG00000051545	ENSSSAG00000116411	ENSSSAG00000086282	ENSSSAG00000114399	ENSSSAG00000051616	ENSSSAG00000051628	ENSSSAG00000051636	ENSSSAG00000051649	ENSSSAG00000051820	ARF4 (ENSSSAG00000051837)	ENSSSAG00000119246	pex11a (ENSSSAG00000051856) #22	ENSSSAG00000051864 #23	ENSSSAG00000051875 ##24	ENSSSAG00000051891	sema4ba (ENSSSAG00000051954) #26	ENSSSAG00000121240	znf710a (ENSSSAG00000051985) #27	idh2 (ENSSSAG00000052047) ##28	ENSSSAG00000054253 #30	ENSSSAG00000054331 #31	ctsh (ENSSSAG00000059459) #32	ENSSSAG00000059646 #34	ENSSSAG00000114787 #35	ENSSSAG00000061381 #36	ENSSSAG00000084882	ENSSSAG00000061448
Huchen	MODERN SPECIES	1773							ENSHHUG00000000882	si:dkey-30c15.13 (ENSHHUG00000000873)	ENSHHUG00000000867	pdp2 (ENSHHUG00000000846)	ENSHHUG00000000832	ENSHHUG00000000806	ENSHHUG00000000800	si:dkey-30c15.2 (ENSHHUG00000000791)	ENSHHUG00000000747	pex11a (ENSHHUG00000000730) #22	ENSHHUG00000000718 #23	ENSHHUG00000000625	ENSHHUG00000000579 ##24	ENSHHUG00000000563	zgc:162879 (ENSHHUG00000000430) #25	sema4ba (ENSHHUG00000000427) #26
Northern pike	MODERN SPECIES	18	CACNA2D1 (ENSELUG00000020542)	ENSELUG00000020451	sema3e (ENSELUG00000020316)	sema3ab (ENSELUG00000020295)	sema3d (ENSELUG00000020193)	grm3 (ENSELUG00000020158)	elapor2a (ENSELUG00000020109)	fam107b (ENSELUG00000019987)	frmd4a (ENSELUG00000019955)	si:dkey-30c15.13 (ENSELUG00000019837)	ENSELUG00000019779	pdp2 (ENSELUG00000019667)	ENSELUG00000019654	ENSELUG00000019623	ENSELUG00000019582	pex11a (ENSELUG00000000859) #22	ENSELUG00000019537 #23	ENSELUG00000001284 ##24	ENSELUG00000019503	zgc:162879 (ENSELUG00000019483) #25	sema4ba (ENSELUG00000000831) #26	znf710a (ENSELUG00000000824) #27	idh2 (ENSELUG00000019359) ##28	ENSELUG00000019254 #30	RASGRF1 (ENSELUG00000019238) #31	ctsh (ENSELUG00000019169) #32	ENSELUG00000019098 #33	FRMD5 (ENSELUG00000019032) #34	ENSELUG00000026622	ENSELUG00000018905 #35	ENSELUG00000026633 #36
Otomorpha	ANCESTRAL SPECIES		ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.b	ENSGT00940000164082.a.a	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35
Clupeiformes	ANCESTRAL SPECIES	4	ENSGT00940000159268 #7	ENSGT00530000063847.a #8	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000174630 #14	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.a	ENSGT00940000165251.g #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00940000165857.b #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36
Denticle herring	MODERN SPECIES	8	TTC23 (ENSDCDG00000035522) #8	mef2aa (ENSDCDG00000035527) #9	ENSDCDG00000035536 #10	nr2f2 (ENSDCDG00000035539) #11	ARRDC4 (ENSDCDG00000035545)	lysmd4 (ENSDCDG00000035547) #12	rgma (ENSDCDG00000035548) #13	ENSDCDG00000035549 #14	chd2 (ENSDCDG00000035551) #15	fam174b (ENSDCDG00000035556) #17	st8sia2 (ENSDCDG00000035558) #18	slco3a1a (ENSDCDG00000035561) #19	si:dkeyp-59c12.1 (ENSDCDG00000035571) #20	ENSDCDG00000035573	gnrhr4 (ENSDCDG00000035575) #21	pex11a (ENSDCDG00000035576) #22	ENSDCDG00000035578 #23	ENSDCDG00000035580 #24	SERF2 (ENSDCDG00000005642)	zgc:162879 (ENSDCDG00000005650) #25	sema4ba (ENSDCDG00000005800) #26	sema4ba (ENSDCDG00000009066) #26	znf710a (ENSDCDG00000009083) #27	idh2 (ENSDCDG00000009186) #28	ENSDCDG00000009977 #29	ENSDCDG00000009985 #30	RASGRF1 (ENSDCDG00000010002) #31	ctsh (ENSDCDG00000010064) #32	ENSDCDG00000010556 #33	FRMD5 (ENSDCDG00000013073) #34	ENSDCDG00000013826 #35
Atlantic herring	MODERN SPECIES	19	igf1ra (ENSCHAG00000020214)	ENSCHAG00000023889	synm (ENSCHAG00000023897) #7	TTC23 (ENSCHAG00000023903) #8	mef2aa (ENSCHAG00000023932) #9	MCTP2 (ENSCHAG00000023968) #10	nr2f2 (ENSCHAG00000024060) #11	ARRDC4 (ENSCHAG00000024092)	lysmd4 (ENSCHAG00000024108) #12	ENSCHAG00000024112	rgma (ENSCHAG00000024121) #13	SLCO3A1 (ENSCHAG00000000652) ##19	si:dkeyp-59c12.1 (ENSCHAG00000000706) #20	ENSCHAG00000000735	gnrhr4 (ENSCHAG00000000753) #21	pex11a (ENSCHAG00000000785) #22	ENSCHAG00000000829 #23	ENSCHAG00000001002 #24	zgc:162879 (ENSCHAG00000001101) #25	sema4ba (ENSCHAG00000001253) #26	znf710a (ENSCHAG00000001672) #27	idh2 (ENSCHAG00000001837) #28	ENSCHAG00000005889 #29	ENSCHAG00000005905 #30	RASGRF1 (ENSCHAG00000005958) #31	ctsh (ENSCHAG00000006673) #32	FRMD5 (ENSCHAG00000007021) #34	ENSCHAG00000007785 #35	ENSCHAG00000007836 #36	slc28a1 (ENSCHAG00000007904) #37	ENSCHAG00000008054
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000155883.a.b.b	ENSGT00940000155883.a.b.a.a	ENSGT00390000018132	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.b	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000155883.a.b.a.a	ENSGT00390000018132	ENSGT00390000018637	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.a	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a.g #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00390000018637	ENSGT00940000156205.h #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00970000195554	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.c #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.a	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a.g #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b #36	ENSGT00390000016025.b #37
Characoidei	ANCESTRAL SPECIES	30	ENSGT00940000155883.a.b.a.a	ENSGT00390000018132	ENSGT00390000018637	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00970000195554	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a.c #23
Red-bellied piranha	MODERN SPECIES	99	fan1 (ENSPNAG00000016852)	ENSPNAG00000016835	ENSPNAG00000016819 #10	nr2f2 (ENSPNAG00000016803) #11	ARRDC4 (ENSPNAG00000016786)	lysmd4 (ENSPNAG00000016772) #12	rgma (ENSPNAG00000016762) #13	ENSPNAG00000016747	chd2 (ENSPNAG00000016719) #15	fam174b (ENSPNAG00000016601) #17	st8sia2 (ENSPNAG00000016583) #18	slco3a1a (ENSPNAG00000016517) #19	si:dkeyp-59c12.1 (ENSPNAG00000016465) #20	ENSPNAG00000016451	gnrhr4 (ENSPNAG00000016427) #21	pex11a (ENSPNAG00000016396) #22	ENSPNAG00000016371 #23	ENSPNAG00000016357 #24
Mexicana tetra	MODERN SPECIES	9	ENSAMXG00000031271	ENSAMXG00000020432 #10	ENSAMXG00000040393 #10	nr2f2 (ENSAMXG00000007395) #11	ARRDC4 (ENSAMXG00000007398)	lysmd4 (ENSAMXG00000039741) #12	rgma (ENSAMXG00000032282) #13	chd2 (ENSAMXG00000007404) #15	fam174b (ENSAMXG00000007408) #17	st8sia2 (ENSAMXG00000007410) #18	slco3a1a (ENSAMXG00000007411) #19	si:dkeyp-59c12.1 (ENSAMXG00000029968) #20	ENSAMXG00000042229	ENSAMXG00000037646	gnrhr4 (ENSAMXG00000040740) #21	pex11a (ENSAMXG00000007418) #22	ENSAMXG00000007420 #23	ENSAMXG00000033509	smtla (ENSAMXG00000008060)	ets1 (ENSAMXG00000029838)	fli1 (ENSAMXG00000040747)	KCNJ1 (ENSAMXG00000025909)	KCNJ1 (ENSAMXG00000025910)	ENSAMXG00000008167	ENSAMXG00000008116	ENSAMXG00000008233	ENSAMXG00000008269	itpkcb (ENSAMXG00000030446)	zgc:153119 (ENSAMXG00000033521)	snrpa (ENSAMXG00000032885)	ENSAMXG00000035143
Electric eel	MODERN SPECIES	80					nr2f2 (ENSEEEG00000017422) #11	ARRDC4 (ENSEEEG00000017421)	lysmd4 (ENSEEEG00000017420) #12	rgma (ENSEEEG00000017417) #13	chd2 (ENSEEEG00000017335) #15	fam174b (ENSEEEG00000017326) #17	st8sia2 (ENSEEEG00000017325) #18	slco3a1a (ENSEEEG00000017324) #19	si:dkeyp-59c12.1 (ENSEEEG00000017320) #20	ENSEEEG00000017319	gnrhr4 (ENSEEEG00000017220) #21	pex11a (ENSEEEG00000017209) #22	ENSEEEG00000017204 #23	ENSEEEG00000017202 #23	SERF2 (ENSEEEG00000017200)	zgc:162879 (ENSEEEG00000017196) #25	sema4ba (ENSEEEG00000017194) #26	ENSEEEG00000017192 #26	znf710a (ENSEEEG00000017191) #27	idh2 (ENSEEEG00000016730) #28	ENSEEEG00000016699 #30	RASGRF1 (ENSEEEG00000016690) #31	ctsh (ENSEEEG00000016665) #32	BLM (ENSEEEG00000016662) #33	FRMD5 (ENSEEEG00000016651) #34	ENSEEEG00000016645 #35	limk1a (ENSEEEG00000016424)
Channel catfish	MODERN SPECIES	11	ccdc47 (ENSIPUG00000012751)	Dcaf7 (ENSIPUG00000012819)	KCNH7 (ENSIPUG00000012866)	gfap (ENSIPUG00000012971)	map3k3 (ENSIPUG00000013028)	Limd2 (ENSIPUG00000013106)	zp3e (ENSIPUG00000013143)	zp3e (ENSIPUG00000013201)	ENSIPUG00000013246	zp3e (ENSIPUG00000013291)	zp3e (ENSIPUG00000013311)	ddx42 (ENSIPUG00000013327)	strada (ENSIPUG00000013408)	RNF113A (ENSIPUG00000013431)	ENSIPUG00000013519	pex11a (ENSIPUG00000013987) #22	snrnp70 (ENSIPUG00000013994)	Lin7b (ENSIPUG00000014024)	zgc:193811 (ENSIPUG00000014065)	kcnc3a (ENSIPUG00000014086)	ENSIPUG00000014140	ENSIPUG00000014226	tlr-20a (ENSIPUG00000014238)	ENSIPUG00000014259	ENSIPUG00000014438	Bax (ENSIPUG00000014452)	slc16a6b (ENSIPUG00000014470)	Wipi1 (ENSIPUG00000014481)	zgc:86896 (ENSIPUG00000014606)	prkar1a (ENSIPUG00000014651)	rac3 (ENSIPUG00000014714)
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00390000018132	ENSGT00940000156205.h.l #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A #11	ENSGT00940000160523	ENSGT00940000160583 #12	ENSGT00950000183112.a #13	ENSGT00940000155888 #15	ENSGT00980000203452 #16	ENSGT00730000111392 #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b #21	ENSGT00390000014273.a #22	ENSGT00940000164943.a.a #23	ENSGT00940000165481.b #24	ENSGT00940000164082.a.b.a	ENSGT00940000165251 #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.d #27	ENSGT00390000012547.a #28	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00940000160227 #32	ENSGT00940000156800 #33	ENSGT00940000156346.c.b #34	ENSGT00390000018044.a #35	ENSGT00940000158534.a.b.f #36	ENSGT00940000158534.a.b.e #36
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	30	ENSGT00940000158063.g.b	ENSGT00940000155883.a.b.a.a	ENSGT00390000018132.u.a	ENSGT00940000156205.h.l.b #9	ENSGT00940000156291.f.d #10	ENSGT00940000157540.A.h #11	ENSGT00940000160523	ENSGT00940000160583.e #12	ENSGT00950000183112.a.g #13	ENSGT00940000155888.fb #15	ENSGT00730000111392.d #17	ENSGT01030000234535.F.a.a #18	ENSGT01080000257410.A.f.m.b #19	ENSGT00940000164158.B.b #20	ENSGT01050000244841.A.a.b.qb.b.d #21	ENSGT00390000014273.a.k #22	ENSGT00940000164943.a.a.e #23	ENSGT00940000165481.b #24	ENSGT00940000165251.f #25	ENSGT00940000154870.D.a.a.i #26	ENSGT00940000161170.d.b #27	ENSGT00390000012547.a.h #28	ENSGT00390000012355.B.a.a #30	ENSGT00940000157599.c.a.a #31	ENSGT00940000160227.f #32	ENSGT00940000156800.k #33	ENSGT00940000156346.c.b.b #34	ENSGT00390000018044.a.d #35	ENSGT00940000158534.a.b.e #36	ENSGT00390000016025.b.b #37	ENSGT00940000158357.a
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00940000155883.a.a	ENSGT00390000018132.u.b	ENSGT00390000018132.u.a	ENSGT00940000156205.h.l.b #9	ENSGT00940000156291.f.d #10	ENSGT00940000157540.A.h #11	ENSGT00940000160523.n	ENSGT00940000160583.e #12	ENSGT00950000183112.a.g #13	ENSGT00940000155888.fb #15	ENSGT00730000111392.d #17	ENSGT01030000234535.F.a.a #18	ENSGT01080000257410.A.f.m.b #19	ENSGT00940000164158.B.b #20	ENSGT01050000244841.A.a.b.qb.b.d #21	ENSGT00390000014273.a.k #22	ENSGT00940000164943.a.a.e #23	ENSGT00940000165481.b #24	ENSGT00940000165251.f #25	ENSGT00940000154870.D.a.a.i #26	ENSGT00940000161170.d.b #27	ENSGT00390000012547.a.h #28	ENSGT00390000012355.B.a.a #30	ENSGT00940000157599.c.a.a #31	ENSGT00940000160227.f #32	ENSGT00940000156800.k #33	ENSGT00940000156346.c.b.b #34	ENSGT00390000018044.a.d #35	ENSGT00940000158534.a.b.e #36	ENSGT00390000016025.b.b #37	ENSGT00940000158357.a
Golden-line barbel	MODERN SPECIES	423						ENSSGRG00000028464	ADAM19 (ENSSGRG00000028676)	thg1l (ENSSGRG00000028765)	ENSSGRG00000028772	nipsnap3a (ENSSGRG00000028775)	ABCA1 (ENSSGRG00000028879)	SLC44A1 (ENSSGRG00000032273)	TBC1D2 (ENSSGRG00000032316)	ELP1 (ENSSGRG00000032353)	smu1a (ENSSGRG00000033025)	pex11a (ENSSGRG00000033124) #22	ENSSGRG00000033125 #23	ENSSGRG00000033127 ##24	ENSSGRG00000033130	sema4ba (ENSSGRG00000033132) #26	znf710a (ENSSGRG00000033133) #27	idh2 (ENSSGRG00000033134) #28	ENSSGRG00000033135 #30	RASGRF1 (ENSSGRG00000033137) #31	ctsh (ENSSGRG00000033430) #32	ENSSGRG00000033480 #33
Common carp reference	MODERN SPECIES	9	nudt21 (ENSCCRG00000010528)	hsf4 (ENSCCRG00000068174)	cbfb (ENSCCRG00000039259)	mef2aa (ENSCCRG00000022525) #9	ENSCCRG00000022328 #10	nr2f2 (ENSCCRG00000075284) #11	ENSCCRG00000017854	lysmd4 (ENSCCRG00000026903) #12	rgma (ENSCCRG00000053972) #13	chd2 (ENSCCRG00000026731) #15	fam174b (ENSCCRG00000002775) #17	st8sia2 (ENSCCRG00000057865) #18	slco3a1a (ENSCCRG00000026680) #19	si:dkeyp-59c12.1 (ENSCCRG00000029632) #20	ENSCCRG00000010649 #21	pex11a (ENSCCRG00000010547) #22	ENSCCRG00000010549 #23	ENSCCRG00000010844 #24	zgc:162879 (ENSCCRG00000081705) #25	ENSCCRG00000082841 #33	sema4ba (ENSCCRG00000010869) #26	znf710a (ENSCCRG00000080676) #27	idh2 (ENSCCRG00000019833) #28	ENSCCRG00000068317 #30	ENSCCRG00000014879 #31	ctsh (ENSCCRG00000039428) #32	ENSCCRG00000006323 #34	ENSCCRG00000043256 #35	ENSCCRG00000043631 #36	slc28a1 (ENSCCRG00000069981) #37	znf592 (ENSCCRG00000043900)
Goldfish	MODERN SPECIES	37	ENSCARG00000046373	mef2aa (ENSCARG00000046385) #9	ENSCARG00000046563 #10	nr2f2 (ENSCARG00000046594) #11	ENSCARG00000036339	lysmd4 (ENSCARG00000036343) #12	ENSCARG00000036346	rgma (ENSCARG00000036350) #13	chd2 (ENSCARG00000036702) #15	fam174b (ENSCARG00000049091) #17	ENSCARG00000049108	st8sia2 (ENSCARG00000049153) #18	slco3a1a (ENSCARG00000049223) #19	si:dkeyp-59c12.1 (ENSCARG00000049316) #20	gnrhr4 (ENSCARG00000049380) #21	pex11a (ENSCARG00000049398) #22	ENSCARG00000049411 #23	zgc:162879 (ENSCARG00000049449) #25	sema4ba (ENSCARG00000049594) #26	znf710a (ENSCARG00000049773) #27	idh2 (ENSCARG00000049841) #28	ENSCARG00000051619 #30	RASGRF1 (ENSCARG00000051724) #31	ctsh (ENSCARG00000053664) #32	BLM (ENSCARG00000053907) #33	FRMD5 (ENSCARG00000055332) #34	ENSCARG00000055405	ENSCARG00000055418 #35	ENSCARG00000055438 #36	slc28a1 (ENSCARG00000055499) #37	znf592 (ENSCARG00000055926)
Cyprininae	ANCESTRAL SPECIES	47	ENSGT00940000158063.g.a	ENSGT00940000155883.a.a	ENSGT00390000018132.u.b	ENSGT00940000156205.h.l.a #9	ENSGT00940000156291.f.c #10	ENSGT00940000157540.A.g #11	ENSGT00940000160583.f #12	ENSGT00950000183112.a.h #13	ENSGT00940000155888.gb #15	ENSGT00730000111392.c #17	ENSGT01030000234535.F.a.b #18	ENSGT01080000257410.A.f.m.a #19	ENSGT00940000164158.B.a #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b.c #21	ENSGT00390000014273.a.l #22	ENSGT00940000164943.a.a.f #23	ENSGT00940000164082.a.b.a	ENSGT00940000165251.e #25	ENSGT00940000154870.D.a.a.j #26	ENSGT00940000161170.d.a #27	ENSGT00390000012547.a.g #28	ENSGT00390000012355.B.a.b #30	ENSGT00940000157599.c.a.b #31	ENSGT00940000160227.e #32	ENSGT00940000156800.l #33	ENSGT00940000156346.c.b.a #34	ENSGT00390000018044.a.c #35	ENSGT00940000158534.a.b.f #36	ENSGT00390000016025.b.a #37	ENSGT00940000158357.b
Cyprininae_a	ANCESTRAL SPECIES	133			ENSGT00940000156205.h.l.a #9	ENSGT00940000156291.f.c #10	ENSGT00940000157540.A.g #11	ENSGT00940000160523.m	ENSGT00940000160583.f #12	ENSGT00950000183112.a.h #13	ENSGT00940000155888.gb #15	ENSGT00730000111392.c #17	ENSGT01030000234535.F.a.b #18	ENSGT01080000257410.A.f.m.a #19	ENSGT00940000164158.B.a #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b.qb.b.c #21	ENSGT00390000014273.a.l #22	ENSGT00940000164943.a.a.f #23	ENSGT00940000164082.a.b.a	ENSGT00940000165251.e #25	ENSGT00940000154870.D.a.a.j #26	ENSGT00940000161170.d.a #27	ENSGT00390000012547.a.g #28	ENSGT00390000012355.B.a.b #30	ENSGT00940000157599.c.a.b #31	ENSGT00940000160227.e #32	ENSGT00940000156800.l #33	ENSGT00940000156346.c.b.a #34	ENSGT00390000018044.a.c #35	ENSGT00940000158534.a.b.f #36	ENSGT00390000016025.b.a #37	ENSGT00940000158357.b
Golden-line barbel	MODERN SPECIES	561														ENSSGRG00000046380	gnrhr4 (ENSSGRG00000046379) #21	pex11a (ENSSGRG00000046378) #22	ENSSGRG00000046377 #23	ENSSGRG00000046375	zgc:162879 (ENSSGRG00000046373) #25	sema4ba (ENSSGRG00000046353) #26	znf710a (ENSSGRG00000046347) #27	idh2 (ENSSGRG00000045063) #28	ENSSGRG00000045053 #30	RASGRF1 (ENSSGRG00000044951) #31	ctsh (ENSSGRG00000044948) #32	ctsh (ENSSGRG00000044947) #32	ENSSGRG00000044945 #33	FRMD5 (ENSSGRG00000044773) #34
Common carp reference	MODERN SPECIES	19	cbfb (ENSCCRG00000040409)	mef2aa (ENSCCRG00000062903) #9	ENSCCRG00000022453	ENSCCRG00000022449 #10	nr2f2 (ENSCCRG00000057453) #11	lysmd4 (ENSCCRG00000047840) #12	rgma (ENSCCRG00000026700) #13	fam174b (ENSCCRG00000026685) #17	chd2 (ENSCCRG00000026693) #15	st8sia2 (ENSCCRG00000075703) #18	slco3a1a (ENSCCRG00000026671) #19	si:dkeyp-59c12.1 (ENSCCRG00000026676) #20	ENSCCRG00000054489	ENSCCRG00000002991	gnrhr4 (ENSCCRG00000010556) #21	pex11a (ENSCCRG00000064600) #22	ENSCCRG00000010558 #23	serf2a (ENSCCRG00000056808)	zgc:162879 (ENSCCRG00000010567) #25	sema4ba (ENSCCRG00000010579) #26	znf710a (ENSCCRG00000015181) #27	idh2 (ENSCCRG00000015188) #28	ENSCCRG00000071179 #30	ENSCCRG00000038256 #31	ctsh (ENSCCRG00000015996) #32	ENSCCRG00000043113 #33	ENSCCRG00000038537 #34	ENSCCRG00000021493 #35	ENSCCRG00000073857 #36	ENSCCRG00000056628 #36	ENSCCRG00000072118
Goldfish	MODERN SPECIES	716	cbfb (ENSCARG00000043762)	mef2aa (ENSCARG00000043518) #9	ENSCARG00000043469 #10	nr2f2 (ENSCARG00000043418) #11	lysmd4 (ENSCARG00000043394) #12	rgma (ENSCARG00000043367) #13	chd2 (ENSCARG00000034987) #15	fam174b (ENSCARG00000034768) #17	st8sia2 (ENSCARG00000034755) #18	slco3a1a (ENSCARG00000034723) #19	ENSCARG00000034718	ENSCARG00000034707	si:dkeyp-59c12.1 (ENSCARG00000034700) #20	ENSCARG00000034691	gnrhr4 (ENSCARG00000034683) #21	pex11a (ENSCARG00000034682) #22	ENSCARG00000034673 #23	ENSCARG00000034669 #24	serf2a (ENSCARG00000034660)	zgc:162879 (ENSCARG00000034653) #25	sema4ba (ENSCARG00000034020) #26	znf710a (ENSCARG00000033970) #27	idh2 (ENSCARG00000031292) #28	ENSCARG00000031192 #30	RASGRF1 (ENSCARG00000030217) #31	ctsh (ENSCARG00000029806) #32	FRMD5 (ENSCARG00000029722) #34	ENSCARG00000029684 #35	ENSCARG00000029668 #36	ENSCARG00000029654 #36	ENSCARG00000029597
Zebrafish	MODERN SPECIES	9	gnao1a (ENSDARG00000016676)	cbfb (ENSDARG00000040917)	mef2aa (ENSDARG00000031756) #9	ENSDARG00000001414 #10	nr2f2 (ENSDARG00000040926) #11	lysmd4 (ENSDARG00000068702) #12	rgma (ENSDARG00000012248) #13	chd2 (ENSDARG00000060687) #15	ENSDARG00000095451 #16	fam174b (ENSDARG00000068709) #17	st8sia2 (ENSDARG00000018788) #18	slco3a1a (ENSDARG00000018726) #19	si:dkeyp-59c12.1 (ENSDARG00000038112) #20	ENSDARG00000054048	gnrhr4 (ENSDARG00000038116) #21	pex11a (ENSDARG00000060707) #22	ENSDARG00000038121 #23	ENSDARG00000001976 #24	serf2a (ENSDARG00000075881)	zgc:162879 (ENSDARG00000074163) #25	sema4ba (ENSDARG00000074414) #26	znf710a (ENSDARG00000014680) #27	idh2 (ENSDARG00000003795) #28	ENSDARG00000093286 #30	RASGRF1 (ENSDARG00000073824) #31	ctsh (ENSDARG00000041108) #32	ENSDARG00000077089 #33	FRMD5 (ENSDARG00000075942) #34	ENSDARG00000068152 #35	ENSDARG00000078989 #36	kti12 (ENSDARG00000054301)
Osteoglossiformes	ANCESTRAL SPECIES	13	ENSGT00940000156682.d	ENSGT00940000159268 #7	ENSGT00940000157771	ENSGT00940000156205.h.r.b #9	ENSGT00940000156291.f #10	ENSGT00940000157540.A.a #11	ENSGT00940000160583 #12	ENSGT00950000183112.a.a #13	ENSGT00730000111392.b #17	ENSGT01030000234535.F.a #18	ENSGT01080000257410.A.f.l ##19	ENSGT01080000257410.A.f.m #19	ENSGT00940000164158.B #20	ENSGT00950000182920.a	ENSGT01050000244841.A.a.b #21	ENSGT00390000014273.a #22	ENSGT00390000009995	ENSGT00940000164943.a.a #23	ENSGT00940000165481 #24	ENSGT00940000164082.a.b	ENSGT00940000165251.a #25	ENSGT00940000154870.D.a.a #26	ENSGT00940000161170.c.j ##27	ENSGT00390000012547.a.c #28	ENSGT00940000159833	ENSGT00940000165857 #29	ENSGT00390000012355.B.a #30	ENSGT00940000157599.c.a #31	ENSGT00510000048144	ENSGT00940000156346.d ##34	ENSGT00940000156346.c.b #34
Asian bonytongue	MODERN SPECIES	22	ENSSFOG00015030175	FLOT1 (ENSSFOG00015029543)	znf384a (ENSSFOG00015023839)	gnb3b (ENSSFOG00015023815)	slc2a3a (ENSSFOG00015023809)	rcvrn2 (ENSSFOG00015023804)	rbm14b (ENSSFOG00015025672)	ENSSFOG00015023793	nit1 (ENSSFOG00015023792)	znf16l (ENSSFOG00015023789)	b4gat1 (ENSSFOG00015023787)	ENSSFOG00015023786	ccs (ENSSFOG00015026923)	ENSSFOG00015023779	zgc:162879 (ENSSFOG00015023774) #25	pex11a (ENSSFOG00015023773) #22	slco3a1a (ENSSFOG00015023771) #19	FAM174B (ENSSFOG00015029263) #17	chd2 (ENSSFOG00015023759) #15	septin15 (ENSSFOG00015023747)	ENSSFOG00015030797	ENSSFOG00015023742	ENSSFOG00015023739	ccl35.1 (ENSSFOG00015023736)	smpd3 (ENSSFOG00015023732)	ENSSFOG00015023731	ndrg4 (ENSSFOG00015029134)	gins3 (ENSSFOG00015023707)	znrf1 (ENSSFOG00015026525)	ldhd (ENSSFOG00015023699)	snrkb (ENSSFOG00015029307)
P. kingsleyae	MODERN SPECIES	148						ENSPKIG00000000577 #14	rgma (ENSPKIG00000000558) #13	chd2 (ENSPKIG00000000495) #15	fam174b (ENSPKIG00000000461) #17	ST8SIA2 (ENSPKIG00000000449) #18	ENSPKIG00000000443	slco3a1a (ENSPKIG00000000419) #19	si:dkeyp-59c12.1 (ENSPKIG00000000406) #20	ENSPKIG00000020761	ENSPKIG00000020748 #21	pex11a (ENSPKIG00000020730) #22	ENSPKIG00000020702 ##23	SERF2 (ENSPKIG00000020684)	zgc:162879 (ENSPKIG00000020661) #25	SEMA4B (ENSPKIG00000020599) ##26	ZNF710 (ENSPKIG00000020562) ##27	idh2 (ENSPKIG00000020516) #28	tmed3 (ENSPKIG00000020495)	si:ch211-107o10.3 (ENSPKIG00000020473) #29	ENSPKIG00000020414	ENSPKIG00000020390	arpin (ENSPKIG00000020365)	anpeplb (ENSPKIG00000020321)	si:dkey-12e7.1 (ENSPKIG00000020306)	ENSPKIG00000020299	ap3s2 (ENSPKIG00000020282)