Vertebrata	ANCESTRAL SPECIES	548																ENSGT00940000155391 #22	ENSGT00390000001443 #23
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	137						ENSGT00390000006758 #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268 #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28
Euteleostomi	ANCESTRAL SPECIES	19	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28
Sarcopterygii	ANCESTRAL SPECIES	21	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Amniota	ANCESTRAL SPECIES	20	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Mammalia	ANCESTRAL SPECIES	9	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Theria	ANCESTRAL SPECIES	8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Eutheria	ANCESTRAL SPECIES	3	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Primates	ANCESTRAL SPECIES		ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Simiiformes	ANCESTRAL SPECIES		ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00410000028070	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00940000160199	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.y.b #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.l #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Mas night monkey	MODERN SPECIES	349	FBXO3 (ENSANAG00000026400) #7	CD59 (ENSANAG00000033427) #8	C11orf91 (ENSANAG00000035705) #9	KIAA1549L (ENSANAG00000028969) #10	ENSANAG00000037529 #11	HIPK3 (ENSANAG00000034057) #12	CSTF3 (ENSANAG00000020699) #13	TCP11L1 (ENSANAG00000029283) #14	DEPDC7 (ENSANAG00000025421) #15	QSER1 (ENSANAG00000034582) #16	PRRG4 (ENSANAG00000033287) #17	CCDC73 (ENSANAG00000021031) #18	EIF3M (ENSANAG00000031661) #19	WT1 (ENSANAG00000025090) #20	RCN1 (ENSANAG00000027955) #21	PAX6 (ENSANAG00000033670) #22	ELP4 (ENSANAG00000025916) #23	IMMP1L (ENSANAG00000035404) #24	DNAJC24 (ENSANAG00000030586) #25	DCDC1 (ENSANAG00000032663) #26	MPPED2 (ENSANAG00000031909) #27	ENSANAG00000033548 #28	FSHB (ENSANAG00000031137) #29	ENSANAG00000023684 #30	KIF18A (ENSANAG00000029125) #31	BDNF (ENSANAG00000024997) #32	LIN7C (ENSANAG00000029538) #33	LGR4 (ENSANAG00000029728) #34	CCDC34 (ENSANAG00000031855) #35	BBOX1 (ENSANAG00000030801) #36	ENSANAG00000035077 #37
Cebidae	ANCESTRAL SPECIES		ENSGT00940000160199	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.y.b #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.l #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00940000153402.c.a.a.b.b.b	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.y.b #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.l #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00940000159545
Capuchin	MODERN SPECIES	195																PAX6 (ENSCCAG00000027337) #22	ELP4 (ENSCCAG00000024160) #23	IMMP1L (ENSCCAG00000026569) #24	DNAJC24 (ENSCCAG00000022237) #25	DCDC1 (ENSCCAG00000030308) #26	MPPED2 (ENSCCAG00000025105) #27	ARL14EP (ENSCCAG00000024703) #28	FSHB (ENSCCAG00000023183) #29	METTL15 (ENSCCAG00000021207) #30	KIF18A (ENSCCAG00000020570) #31
Bolivian squirrel monkey	MODERN SPECIES	42	FBXO3 (ENSSBOG00000023671) #7	CD59 (ENSSBOG00000022436) #8	C11orf91 (ENSSBOG00000020764) #9	KIAA1549L (ENSSBOG00000033426) #10	HIPK3 (ENSSBOG00000033538) #12	CSTF3 (ENSSBOG00000024764) #13	TCP11L1 (ENSSBOG00000022211) #14	DEPDC7 (ENSSBOG00000000510) #15	ENSSBOG00000022725	QSER1 (ENSSBOG00000030905) #16	PRRG4 (ENSSBOG00000021778) #17	CCDC73 (ENSSBOG00000026906) #18	EIF3M (ENSSBOG00000035716) #19	WT1 (ENSSBOG00000020662) #20	RCN1 (ENSSBOG00000028033) #21	PAX6 (ENSSBOG00000006775) #22	ELP4 (ENSSBOG00000020947) #23	ENSSBOG00000015478 #24	DNAJC24 (ENSSBOG00000031346) #25	ENSSBOG00000032005	ENSSBOG00000032797	ENSSBOG00000032990	MPPED2 (ENSSBOG00000000302) #27	ARL14EP (ENSSBOG00000021179) #28	FSHB (ENSSBOG00000034865) #29	ENSSBOG00000018245 #30	KIF18A (ENSSBOG00000028620) #31	BDNF (ENSSBOG00000027637) #32	LIN7C (ENSSBOG00000032877) #33	LGR4 (ENSSBOG00000016508) #34	CCDC34 (ENSSBOG00000032847) #35
Marmoset	MODERN SPECIES	2	ENSCJAG00000076270	LMO2 (ENSCJAG00000010531)	FBXO3 (ENSCJAG00000010459) #7	CD59 (ENSCJAG00000043097) #8	C11orf91 (ENSCJAG00000044908) #9	KIAA1549L (ENSCJAG00000010403) #10	HIPK3 (ENSCJAG00000010402) #12	CSTF3 (ENSCJAG00000005533) #13	TCP11L1 (ENSCJAG00000005638) #14	DEPDC7 (ENSCJAG00000005688) #15	QSER1 (ENSCJAG00000005754) #16	CCDC73 (ENSCJAG00000005803) #18	EIF3M (ENSCJAG00000005845) #19	WT1 (ENSCJAG00000005900) #20	RCN1 (ENSCJAG00000005925) #21	PAX6 (ENSCJAG00000005942) #22	ELP4 (ENSCJAG00000005994) #23	IMMP1L (ENSCJAG00000006042) ##24	DNAJC24 (ENSCJAG00000067145) #25	ENSCJAG00000006055	ENSCJAG00000077881	ENSCJAG00000086423	ENSCJAG00000006060	MPPED2 (ENSCJAG00000006095) #27	ARL14EP (ENSCJAG00000052482) #28	FSHB (ENSCJAG00000069180) #29	KCNA4 (ENSCJAG00000006129)	ENSCJAG00000071341	ENSCJAG00000077506	METTL15 (ENSCJAG00000042420) #30	KIF18A (ENSCJAG00000006149) #31
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00940000153305.c.e.a	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00390000005496.f	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.o.b #21	ENSGT00410000028070	ENSGT01010000222360.D.b.p #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00940000153305.c.e.a	ENSGT00390000007725.B.d #32	ENSGT00390000004856.w.a.a.a
Gibbon	MODERN SPECIES	5	ENSNLEG00000018183	FBXO3 (ENSNLEG00000017908) #7	ENSNLEG00000027673 #8	KIAA1549L (ENSNLEG00000026545) #10	HIPK3 (ENSNLEG00000017906) #12	CSTF3 (ENSNLEG00000017901) #13	ENSNLEG00000030363	TCP11L1 (ENSNLEG00000017899) #14	ENSNLEG00000017897 #15	QSER1 (ENSNLEG00000017896) #16	PRRG4 (ENSNLEG00000028029) #17	CCDC73 (ENSNLEG00000017894) #18	EIF3M (ENSNLEG00000029977) #19	ENSNLEG00000017890 #20	RCN1 (ENSNLEG00000017889) #21	ENSNLEG00000033407 #22	ELP4 (ENSNLEG00000017886) #23	IMMP1L (ENSNLEG00000017882) #24	DNAJC24 (ENSNLEG00000033486) #25	ENSNLEG00000017876	ENSNLEG00000017872	MPPED2 (ENSNLEG00000017871) #27	ARL14EP (ENSNLEG00000017870) #28	FSHB (ENSNLEG00000017869) #29	METTL15 (ENSNLEG00000033555) #30	KIF18A (ENSNLEG00000017861) #31	ENSNLEG00000033743	ENSNLEG00000017857 #32	ENSNLEG00000034013	LIN7C (ENSNLEG00000031840) #33	LGR4 (ENSNLEG00000017852) #34
Hominidae	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00390000005496.f	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070.d	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00390000004856.w.a.a.a	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Orangutan	MODERN SPECIES	2	FBXO3 (ENSPPYG00000003369) #7	CD59 (ENSPPYG00000003370) #8	C11orf91 (ENSPPYG00000038055) #9	KIAA1549L (ENSPPYG00000003373) #10	HIPK3 (ENSPPYG00000003374) #12	CSTF3 (ENSPPYG00000003375) #13	TCP11L1 (ENSPPYG00000003376) #14	DEPDC7 (ENSPPYG00000003377) #15	QSER1 (ENSPPYG00000003378) #16	PRRG4 (ENSPPYG00000003379) #17	CCDC73 (ENSPPYG00000003380) #18	EIF3M (ENSPPYG00000038184) #19	WT1 (ENSPPYG00000029822) #20	RCN1 (ENSPPYG00000003385) #21	ENSPPYG00000003384	ENSPPYG00000003386 #22	ENSPPYG00000003387 #23	IMMP1L (ENSPPYG00000003389) #24	DNAJC24 (ENSPPYG00000041456) #25	DCDC1 (ENSPPYG00000003391) #26	MPPED2 (ENSPPYG00000003395) #27	ARL14EP (ENSPPYG00000003396) #28	FSHB (ENSPPYG00000003397) #29	KCNA4 (ENSPPYG00000003398)	METTL15 (ENSPPYG00000003399) #30	KIF18A (ENSPPYG00000003400) #31	BDNF (ENSPPYG00000003401) #32	LIN7C (ENSPPYG00000003403) #33	LGR4 (ENSPPYG00000003405) #34	CCDC34 (ENSPPYG00000003406) #35	BBOX1 (ENSPPYG00000003407) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00390000005496.f	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070.d	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00390000004856.w.a.a.a	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Gorilla	MODERN SPECIES	2	FBXO3 (ENSGGOG00000001949) #7	ENSGGOG00000041311 #8	KIAA1549L (ENSGGOG00000004207) #10	HIPK3 (ENSGGOG00000025468) #12	CSTF3 (ENSGGOG00000026591) #13	ENSGGOG00000040397	TCP11L1 (ENSGGOG00000005771) #14	DEPDC7 (ENSGGOG00000024043) #15	QSER1 (ENSGGOG00000008849) #16	PRRG4 (ENSGGOG00000004991) #17	CCDC73 (ENSGGOG00000002801) #18	EIF3M (ENSGGOG00000002796) #19	WT1 (ENSGGOG00000011586) #20	ENSGGOG00000025051	RCN1 (ENSGGOG00000025038) #21	ENSGGOG00000010246 #22	ENSGGOG00000027818 #23	IMMP1L (ENSGGOG00000014897) #24	DNAJC24 (ENSGGOG00000022150) #25	DCDC1 (ENSGGOG00000002435) #26	MPPED2 (ENSGGOG00000010368) #27	ARL14EP (ENSGGOG00000014384) #28	FSHB (ENSGGOG00000009510) #29	ENSGGOG00000006919	METTL15 (ENSGGOG00000026989) #30	KIF18A (ENSGGOG00000000521) #31	ENSGGOG00000006038	ENSGGOG00000028388	ENSGGOG00000036607 #32	ENSGGOG00000002641	LIN7C (ENSGGOG00000026123) #33
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00390000005496.f	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070.d	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00390000004856.w.a.a.a	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Human	MODERN SPECIES	2	CD59 (ENSG00000085063) #8	ENSG00000284969	C11orf91 (ENSG00000205177) #9	KIAA1549L (ENSG00000110427) #10	HIPK3 (ENSG00000110422) #12	CSTF3 (ENSG00000176102) #13	TCP11L1 (ENSG00000176148) #14	DEPDC7 (ENSG00000121690) #15	QSER1 (ENSG00000060749) #16	PRRG4 (ENSG00000135378) #17	CCDC73 (ENSG00000186714) #18	EIF3M (ENSG00000149100) #19	WT1 (ENSG00000184937) #20	RCN1 (ENSG00000049449) #21	ENSG00000285283	PAX6 (ENSG00000007372) #22	ELP4 (ENSG00000109911) #23	IMMP1L (ENSG00000148950) #24	DNAJC24 (ENSG00000170946) #25	DCDC1 (ENSG00000170959) #26	MPPED2 (ENSG00000066382) #27	ARL14EP (ENSG00000152219) #28	FSHB (ENSG00000131808) #29	KCNA4 (ENSG00000182255)	METTL15 (ENSG00000169519) #30	KIF18A (ENSG00000121621) #31	BDNF (ENSG00000176697) #32	LIN7C (ENSG00000148943) #33	LGR4 (ENSG00000205213) #34	CCDC34 (ENSG00000109881) #35	BBOX1 (ENSG00000129151) #36
Pan	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00390000005496.f	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070.d	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00940000153305.c.e.a	ENSGT00390000007725.B.d #32	ENSGT00390000004856.w.a.a.a	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Bonobo	MODERN SPECIES	2	ENSPPAG00000016006	FBXO3 (ENSPPAG00000032146) #7	CD59 (ENSPPAG00000036733) #8	ENSPPAG00000033085 #10	HIPK3 (ENSPPAG00000042665) #12	CSTF3 (ENSPPAG00000027358) #13	ENSPPAG00000042143	TCP11L1 (ENSPPAG00000028485) #14	DEPDC7 (ENSPPAG00000039670) #15	QSER1 (ENSPPAG00000039290) #16	PRRG4 (ENSPPAG00000008783) #17	CCDC73 (ENSPPAG00000018334) #18	EIF3M (ENSPPAG00000029515) #19	WT1 (ENSPPAG00000033782) #20	ENSPPAG00000040558 #21	ENSPPAG00000043756 #22	ENSPPAG00000037785 #23	ENSPPAG00000038373 #23	IMMP1L (ENSPPAG00000043763) #24	DNAJC24 (ENSPPAG00000031696) #25	DCDC1 (ENSPPAG00000034560) #26	MPPED2 (ENSPPAG00000023523) #27	ARL14EP (ENSPPAG00000043692) #28	FSHB (ENSPPAG00000038796) #29	METTL15 (ENSPPAG00000028911) #30	KIF18A (ENSPPAG00000035021) #31	ENSPPAG00000039519	ENSPPAG00000036272	ENSPPAG00000029232 #32	ENSPPAG00000014750	LIN7C (ENSPPAG00000034836) #33
Chimpanzee	MODERN SPECIES	2	FBXO3 (ENSPTRG00000003490) #7	CD59 (ENSPTRG00000003489) #9	KIAA1549L (ENSPTRG00000003487) #10	HIPK3 (ENSPTRG00000003486) #12	CSTF3 (ENSPTRG00000003485) #13	ENSPTRG00000043490	TCP11L1 (ENSPTRG00000003483) #14	DEPDC7 (ENSPTRG00000003482) #15	QSER1 (ENSPTRG00000003481) #16	PRRG4 (ENSPTRG00000044460) #17	CCDC73 (ENSPTRG00000003479) #18	EIF3M (ENSPTRG00000003478) #19	WT1 (ENSPTRG00000003476) #20	ENSPTRG00000050578	RCN1 (ENSPTRG00000046292) #21	PAX6 (ENSPTRG00000003474) #22	ELP4 (ENSPTRG00000003473) #23	IMMP1L (ENSPTRG00000003472) #24	DNAJC24 (ENSPTRG00000003471) #25	DCDC1 (ENSPTRG00000003467) #26	MPPED2 (ENSPTRG00000003466) #27	ARL14EP (ENSPTRG00000003465) #28	FSHB (ENSPTRG00000003463) #29	METTL15 (ENSPTRG00000003461) #30	KIF18A (ENSPTRG00000003460) #31	ENSPTRG00000043934	ENSPTRG00000051301	BDNF (ENSPTRG00000040882) #32	ENSPTRG00000043690	LIN7C (ENSPTRG00000003457) #33	LGR4 (ENSPTRG00000028697) #34
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00910000148919	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00940000153305.c.e.a	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Rhinopithecus	ANCESTRAL SPECIES	111	ENSGT00390000016309 #8	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00910000148919	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT01010000222360.D.b.o.a.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586.c #28	ENSGT00940000160051 #29	ENSGT00390000003219.g
Golden snub-nosed monkey	MODERN SPECIES	3270	FBXO3 (ENSRROG00000040121) #7	CD59 (ENSRROG00000024041) #8	KIAA1549L (ENSRROG00000039380) #10	HIPK3 (ENSRROG00000043050) #12	CSTF3 (ENSRROG00000043450) #13	TCP11L1 (ENSRROG00000036609) #14	DEPDC7 (ENSRROG00000037551) #15	ENSRROG00000033898	QSER1 (ENSRROG00000041839) #16	PRRG4 (ENSRROG00000027600) #17	CCDC73 (ENSRROG00000029039) #18	EIF3M (ENSRROG00000041725) #19	WT1 (ENSRROG00000021147) #20	ENSRROG00000031511	ENSRROG00000001783 #21	PAX6 (ENSRROG00000035709) #22	ELP4 (ENSRROG00000023437) #23	IMMP1L (ENSRROG00000040703) #24	ENSRROG00000024614	DNAJC24 (ENSRROG00000033095) #25	DCDC1 (ENSRROG00000003321) #26	MPPED2 (ENSRROG00000033004) #27	ARL14EP (ENSRROG00000031136) #28
Black snub-nosed monkey	MODERN SPECIES	802																PAX6 (ENSRBIG00000033156) #22	ELP4 (ENSRBIG00000042707) #23	IMMP1L (ENSRBIG00000025829) #24	DNAJC24 (ENSRBIG00000030191) #25	ENSRBIG00000015247	ENSRBIG00000000044	ENSRBIG00000030640
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00910000148919	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.m.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Vervet Monkey	MODERN SPECIES		LMO2 (ENSCSAG00000005369)	FBXO3 (ENSCSAG00000005366) #7	CD59 (ENSCSAG00000005360) #8	C11orf91 (ENSCSAG00000005348) #9	KIAA1549L (ENSCSAG00000005316) #10	HIPK3 (ENSCSAG00000005298) #12	ENSCSAG00000005283	TCP11L1 (ENSCSAG00000005280) #14	DEPDC7 (ENSCSAG00000005274) #15	QSER1 (ENSCSAG00000005271) #16	PRRG4 (ENSCSAG00000005265) #17	CCDC73 (ENSCSAG00000005263) #18	EIF3M (ENSCSAG00000005261) #19	WT1 (ENSCSAG00000005257) #20	RCN1 (ENSCSAG00000005255) #21	PAX6 (ENSCSAG00000005253) #22	ELP4 (ENSCSAG00000005250) #23	IMMP1L (ENSCSAG00000005248) #24	DNAJC24 (ENSCSAG00000005245) #25	ENSCSAG00000005242	ENSCSAG00000005240	MPPED2 (ENSCSAG00000005239) #27	ARL14EP (ENSCSAG00000005237) #28	FSHB (ENSCSAG00000005235) #29	KCNA4 (ENSCSAG00000019316)	METTL15 (ENSCSAG00000005230) #30	ENSCSAG00000005219	KIF18A (ENSCSAG00000005218) #31	BDNF (ENSCSAG00000019317) #32	LIN7C (ENSCSAG00000005215) #33	LGR4 (ENSCSAG00000005209) #34
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00910000148919	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.m.a.a.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.m.a.a.a #30	ENSGT00940000159058 #31	ENSGT00940000153305.c.e.a	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00410000029507
Olive baboon	MODERN SPECIES	3	ENSPANG00000040901	CSTF3 (ENSPANG00000013722) #13	TCP11L1 (ENSPANG00000005094) #14	DEPDC7 (ENSPANG00000007554) #15	QSER1 (ENSPANG00000011445) #16	PRRG4 (ENSPANG00000014281) #17	ENSPANG00000023649	EIF3M (ENSPANG00000006540) #19	WT1 (ENSPANG00000019482) #20	ENSPANG00000043688	ENSPANG00000038077	ENSPANG00000031209	ENSPANG00000018409 #21	ENSPANG00000049611	ENSPANG00000047733	PAX6 (ENSPANG00000005448) #22	ELP4 (ENSPANG00000025795) #23	IMMP1L (ENSPANG00000030673) #24	ENSPANG00000043615	ENSPANG00000042363	ENSPANG00000037947	DCDC1 (ENSPANG00000019082) #26	MPPED2 (ENSPANG00000007977) #27	ARL14EP (ENSPANG00000035131) #28	FSHB (ENSPANG00000038639) #29	ENSPANG00000025704	KCNA4 (ENSPANG00000040485)	ENSPANG00000042193	METTL15 (ENSPANG00000008467) #30	KIF18A (ENSPANG00000007185) #31	ENSPANG00000042438
Cercopithecinae_d	ANCESTRAL SPECIES	61	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.m.a.a.a #30	ENSGT00940000159058 #31	ENSGT00390000009724.l.u.a.b.b	ENSGT00390000014756.m.a.b #30
Drill	MODERN SPECIES	1463	LMO2 (ENSMLEG00000029197)	FBXO3 (ENSMLEG00000041134) #7	CD59 (ENSMLEG00000037740) #8	KIAA1549L (ENSMLEG00000027768) #10	HIPK3 (ENSMLEG00000031846) #12	ENSMLEG00000038576	CSTF3 (ENSMLEG00000039594) #13	TCP11L1 (ENSMLEG00000042483) #14	DEPDC7 (ENSMLEG00000042787) #15	QSER1 (ENSMLEG00000027791) #16	PRRG4 (ENSMLEG00000039168) #17	CCDC73 (ENSMLEG00000039999) #18	EIF3M (ENSMLEG00000000401) #19	WT1 (ENSMLEG00000040206) #20	RCN1 (ENSMLEG00000041748) #21	PAX6 (ENSMLEG00000030045) #22	ELP4 (ENSMLEG00000028701) #23	IMMP1L (ENSMLEG00000017715) #24	DNAJC24 (ENSMLEG00000042215) #25	DCDC1 (ENSMLEG00000039147) #26	MPPED2 (ENSMLEG00000038736) #27	ARL14EP (ENSMLEG00000032547) #28	FSHB (ENSMLEG00000037161) #29	ENSMLEG00000005635	ENSMLEG00000028034
Sooty mangabey	MODERN SPECIES	660	LMO2 (ENSCATG00000035418)	FBXO3 (ENSCATG00000043919) #7	C11orf91 (ENSCATG00000038135) #9	KIAA1549L (ENSCATG00000036464) #10	HIPK3 (ENSCATG00000037808) #12	CSTF3 (ENSCATG00000007080) #13	TCP11L1 (ENSCATG00000038705) #14	DEPDC7 (ENSCATG00000014838) #15	QSER1 (ENSCATG00000002800) #16	PRRG4 (ENSCATG00000033395) #17	CCDC73 (ENSCATG00000033902) #18	EIF3M (ENSCATG00000014736) #19	WT1 (ENSCATG00000034786) #20	ENSCATG00000032474	RCN1 (ENSCATG00000008559) #21	PAX6 (ENSCATG00000036582) #22	ELP4 (ENSCATG00000030606) #23	IMMP1L (ENSCATG00000043671) #24	DNAJC24 (ENSCATG00000038226) #25	DCDC1 (ENSCATG00000021904) #26	MPPED2 (ENSCATG00000039565) #27	ARL14EP (ENSCATG00000038822) #28	FSHB (ENSCATG00000037981) #29	ENSCATG00000021392	METTL15 (ENSCATG00000039486) #30	KIF18A (ENSCATG00000031251) #31
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00910000148919	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT01010000222360.D.b.o.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025.`b.a #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.m.a.a.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.a.b
Pig-tailed macaque	MODERN SPECIES	485	LMO2 (ENSMNEG00000031732)	FBXO3 (ENSMNEG00000045464) #7	C11orf91 (ENSMNEG00000033587) #9	KIAA1549L (ENSMNEG00000040724) #10	HIPK3 (ENSMNEG00000030400) #12	CSTF3 (ENSMNEG00000021807) #13	TCP11L1 (ENSMNEG00000034850) #14	DEPDC7 (ENSMNEG00000010538) #15	QSER1 (ENSMNEG00000038918) #16	PRRG4 (ENSMNEG00000035106) #17	CCDC73 (ENSMNEG00000037225) #18	EIF3M (ENSMNEG00000002856) #19	WT1 (ENSMNEG00000010071) #20	ENSMNEG00000036921	RCN1 (ENSMNEG00000032501) #21	PAX6 (ENSMNEG00000035602) #22	ELP4 (ENSMNEG00000044060) #23	IMMP1L (ENSMNEG00000002551) #24	DNAJC24 (ENSMNEG00000038746) #25	DCDC1 (ENSMNEG00000028720) #26	MPPED2 (ENSMNEG00000033181) #27	ARL14EP (ENSMNEG00000027874) #28	FSHB (ENSMNEG00000009932) #29	ENSMNEG00000032978	ENSMNEG00000007805	METTL15 (ENSMNEG00000037173) #30	KIF18A (ENSMNEG00000036550) #31
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00910000148919	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT01100000263539.b.b.b.a.b.b.a.b	ENSGT00940000156734 #20	ENSGT01030000240314	ENSGT01010000222360.D.b.p #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00550000075025.`b.a #24	ENSGT00390000001443 #23	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00390000014756.m.a.a.a #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.a.b.b.b.a.a.c.b.a	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.a.b
Crab-eating macaque	MODERN SPECIES	5	CSTF3 (ENSMFAG00000029516) #13	ENSMFAG00000053275	TCP11L1 (ENSMFAG00000036174) #14	DEPDC7 (ENSMFAG00000030758) #15	ENSMFAG00000054564	QSER1 (ENSMFAG00000042029) #16	ENSMFAG00000050331	PRRG4 (ENSMFAG00000001744) #17	CCDC73 (ENSMFAG00000043757) #18	EIF3M (ENSMFAG00000040767) #19	ENSMFAG00000062574	WT1 (ENSMFAG00000030746) #20	ENSMFAG00000059799	RCN1 (ENSMFAG00000029569) #21	ENSMFAG00000044003	PAX6 (ENSMFAG00000019311) #22	ELP4 (ENSMFAG00000001333) #23	ENSMFAG00000059878	ENSMFAG00000060830	IMMP1L (ENSMFAG00000030415) #24	DCDC1 (ENSMFAG00000040936) #26	MPPED2 (ENSMFAG00000045441) #27	ARL14EP (ENSMFAG00000001165) #28	FSHB (ENSMFAG00000039808) #29	ENSMFAG00000001947	ENSMFAG00000049275	ENSMFAG00000050246	ENSMFAG00000062924	ENSMFAG00000004430	ENSMFAG00000054669	METTL15 (ENSMFAG00000043868) #30
Rhesus	MODERN SPECIES	5	KIAA1549L (ENSMMUG00000017218) #10	HIPK3 (ENSMMUG00000019988) #12	CSTF3 (ENSMMUG00000002542) #13	TCP11L1 (ENSMMUG00000002539) #14	DEPDC7 (ENSMMUG00000002535) #15	QSER1 (ENSMMUG00000001536) #16	ENSMMUG00000055352	PRRG4 (ENSMMUG00000049850) #17	CCDC73 (ENSMMUG00000009028) #18	EIF3M (ENSMMUG00000009026) #19	ENSMMUG00000060261	WT1 (ENSMMUG00000009881) #20	ENSMMUG00000041430	RCN1 (ENSMMUG00000018360) #21	ENSMMUG00000043127	PAX6 (ENSMMUG00000016810) #22	DNAJC24 (ENSMMUG00000016807) #23	IMMP1L (ENSMMUG00000016806) #24	ENSMMUG00000049710	ENSMMUG00000006842	MPPED2 (ENSMMUG00000017592) #27	ARL14EP (ENSMMUG00000017590) #28	FSHB (ENSMMUG00000042298) #29	ENSMMUG00000016472	KCNA4 (ENSMMUG00000055210)	ENSMMUG00000065335	METTL15 (ENSMMUG00000013616) #30	KIF18A (ENSMMUG00000013613) #31	BDNF (ENSMMUG00000008634) #32	ENSMMUG00000053553	LIN7C (ENSMMUG00000023119) #33
Tarsier	MODERN SPECIES	4432																PAX6 (ENSTSYG00000011965) #22	ELP4 (ENSTSYG00000011963) #23	IMMP1L (ENSTSYG00000009257) #24	DNAJC24 (ENSTSYG00000009243) #25	ENSTSYG00000006710	ENSTSYG00000004242 #27
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Mouse lemur	MODERN SPECIES	27	LMO2 (ENSMICG00000027826)	FBXO3 (ENSMICG00000012713) #7	CD59 (ENSMICG00000037109) #8	C11orf91 (ENSMICG00000042497) #9	KIAA1549L (ENSMICG00000012651) #10	HIPK3 (ENSMICG00000038979) #12	CSTF3 (ENSMICG00000004784) #13	TCP11L1 (ENSMICG00000004776) #14	DEPDC7 (ENSMICG00000004770) #15	QSER1 (ENSMICG00000035367) #16	PRRG4 (ENSMICG00000046080) #17	CCDC73 (ENSMICG00000027398) #18	EIF3M (ENSMICG00000035817) #19	WT1 (ENSMICG00000004097) #20	RCN1 (ENSMICG00000027735) #21	PAX6 (ENSMICG00000004089) #22	ELP4 (ENSMICG00000031183) #23	ENSMICG00000030529 #24	DNAJC24 (ENSMICG00000035987) #25	ENSMICG00000007547	ENSMICG00000011555	MPPED2 (ENSMICG00000033674) #27	ARL14EP (ENSMICG00000011547) #28	FSHB (ENSMICG00000011542) #29	METTL15 (ENSMICG00000005178) #30	KIF18A (ENSMICG00000005169) #31	BDNF (ENSMICG00000031803) #32	LIN7C (ENSMICG00000005165) #33	LGR4 (ENSMICG00000005157) #34	CCDC34 (ENSMICG00000005153) #35	BBOX1 (ENSMICG00000005143) #36
Lemuriformes_a	ANCESTRAL SPECIES	92	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000007888.c.b.e	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Greater bamboo lemur	MODERN SPECIES	280	LMO2 (ENSPSMG00000016253)	FBXO3 (ENSPSMG00000016164) #7	C11orf91 (ENSPSMG00000015950) #9	KIAA1549L (ENSPSMG00000015945) #10	HIPK3 (ENSPSMG00000015860) #12	CSTF3 (ENSPSMG00000015685) #13	TCP11L1 (ENSPSMG00000015633) #14	DEPDC7 (ENSPSMG00000015597) #15	ENSPSMG00000015560 #16	PRRG4 (ENSPSMG00000015554) #17	CCDC73 (ENSPSMG00000015536) #18	EIF3M (ENSPSMG00000015489) #19	WT1 (ENSPSMG00000015310) #20	ENSPSMG00000015171	RCN1 (ENSPSMG00000015166) #21	PAX6 (ENSPSMG00000014706) #22	ELP4 (ENSPSMG00000014343) #23	IMMP1L (ENSPSMG00000014225) #24	DNAJC24 (ENSPSMG00000014204) #25	DCDC1 (ENSPSMG00000014185) #26	MPPED2 (ENSPSMG00000014153) #27	ARL14EP (ENSPSMG00000014131) #28	ENSPSMG00000014117	FSHB (ENSPSMG00000014111) #29	ENSPSMG00000014098 #29	KCNA4 (ENSPSMG00000014085)	ENSPSMG00000014055	METTL15 (ENSPSMG00000014046) #30	KIF18A (ENSPSMG00000014031) #31	BDNF (ENSPSMG00000014018) #32	LIN7C (ENSPSMG00000013970) #33
Coquerels sifaka	MODERN SPECIES	425	C11orf91 (ENSPCOG00000023742) #9	KIAA1549L (ENSPCOG00000022400) #10	ENSPCOG00000018218	HIPK3 (ENSPCOG00000017859) #12	CSTF3 (ENSPCOG00000014417) #13	TCP11L1 (ENSPCOG00000027055) #14	DEPDC7 (ENSPCOG00000000072) #15	QSER1 (ENSPCOG00000015677) #16	ENSPCOG00000012591	PRRG4 (ENSPCOG00000017212) #17	CCDC73 (ENSPCOG00000019230) #18	EIF3M (ENSPCOG00000005374) #19	WT1 (ENSPCOG00000020436) #20	RCN1 (ENSPCOG00000028732) #21	ENSPCOG00000015851	PAX6 (ENSPCOG00000027283) #22	ELP4 (ENSPCOG00000026997) #23	IMMP1L (ENSPCOG00000013501) #24	DNAJC24 (ENSPCOG00000017556) #25	ENSPCOG00000025939	ENSPCOG00000027565	ENSPCOG00000020955	MPPED2 (ENSPCOG00000021931) #27	ARL14EP (ENSPCOG00000022743) #28	FSHB (ENSPCOG00000018340) #29	ENSPCOG00000024624	METTL15 (ENSPCOG00000016394) #30	KIF18A (ENSPCOG00000021853) #31	BDNF (ENSPCOG00000004782) #32	LIN7C (ENSPCOG00000023241) #33	LGR4 (ENSPCOG00000027962) #34
Bushbaby	MODERN SPECIES	116	CAPRIN1 (ENSOGAG00000016733)	LMO2 (ENSOGAG00000014321)	FBXO3 (ENSOGAG00000014318) #7	CD59 (ENSOGAG00000003325) #8	C11orf91 (ENSOGAG00000033539) #9	KIAA1549L (ENSOGAG00000003316) #10	HIPK3 (ENSOGAG00000008857) #12	CSTF3 (ENSOGAG00000010229) #13	TCP11L1 (ENSOGAG00000003835) #14	DEPDC7 (ENSOGAG00000009992) #15	QSER1 (ENSOGAG00000034265) #16	CCDC73 (ENSOGAG00000033579) #18	EIF3M (ENSOGAG00000015913) #19	WT1 (ENSOGAG00000007118) #20	RCN1 (ENSOGAG00000007861) #21	PAX6 (ENSOGAG00000007857) #22	ELP4 (ENSOGAG00000007855) #23	IMMP1L (ENSOGAG00000007853) #24	DNAJC24 (ENSOGAG00000007848) #25	ENSOGAG00000007847	ENSOGAG00000012348	MPPED2 (ENSOGAG00000008769) #27	ARL14EP (ENSOGAG00000008767) #28	ENSOGAG00000032601	ENSOGAG00000034776	FSHB (ENSOGAG00000013541) #29	KCNA4 (ENSOGAG00000033403)	ENSOGAG00000030085	METTL15 (ENSOGAG00000017074) #30	KIF18A (ENSOGAG00000017068) #31	BDNF (ENSOGAG00000017065) #32
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Tree shrew	MODERN SPECIES	321																PAX6 (ENSTBEG00000004748) #22	ELP4 (ENSTBEG00000004481) #23
Glires	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT01030000240070	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Rabbit	MODERN SPECIES		KIAA1549L (ENSOCUG00000029147) #10	HIPK3 (ENSOCUG00000001215) #12	CSTF3 (ENSOCUG00000015417) #13	ENSOCUG00000023635	TCP11L1 (ENSOCUG00000015409) #14	QSER1 (ENSOCUG00000015381) #16	PRRG4 (ENSOCUG00000012440) #17	ENSOCUG00000035878	CCDC73 (ENSOCUG00000004491) #18	ENSOCUG00000004483 #19	WT1 (ENSOCUG00000005882) #20	ENSOCUG00000033792	ENSOCUG00000031206	ENSOCUG00000029350	RCN1 (ENSOCUG00000016268) #21	PAX6 (ENSOCUG00000011075) #22	ELP4 (ENSOCUG00000001925) #23	IMMP1L (ENSOCUG00000029612) #24	DNAJC24 (ENSOCUG00000027642) #25	DCDC1 (ENSOCUG00000016555) #26	MPPED2 (ENSOCUG00000004904) #27	ARL14EP (ENSOCUG00000027628) #28	FSHB (ENSOCUG00000021932) #29	KCNA4 (ENSOCUG00000014475)	METTL15 (ENSOCUG00000014291) #30	KIF18A (ENSOCUG00000013950) #31	BDNF (ENSOCUG00000006731) #32	LIN7C (ENSOCUG00000004075) #33	LGR4 (ENSOCUG00000004061) #34	CCDC34 (ENSOCUG00000004054) #35	ENSOCUG00000037126
Pika	MODERN SPECIES	3347																PAX6 (ENSOPRG00000001678) #22	ELP4 (ENSOPRG00000001652) #23	IMMP1L (ENSOPRG00000001647) #24	DNAJC24 (ENSOPRG00000001638) #25
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Muroidea	ANCESTRAL SPECIES	2	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Cricetidae_B	ANCESTRAL SPECIES	34	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Northern American deer mouse	MODERN SPECIES	17	Fbxo3 (ENSPEMG00000018420) #7	ENSPEMG00000026456 #8	A930018P22Rik (ENSPEMG00000000170) #9	D430041D05Rik (ENSPEMG00000020969) #10	Hipk3 (ENSPEMG00000000900) #12	Cstf3 (ENSPEMG00000011481) #13	Tcp11l1 (ENSPEMG00000017123) #14	Depdc7 (ENSPEMG00000015544) #15	Qser1 (ENSPEMG00000008956) #16	Prrg4 (ENSPEMG00000017500) #17	ENSPEMG00000015426 #18	Eif3m (ENSPEMG00000011786) #19	Wt1 (ENSPEMG00000001292) #20	Them7 (ENSPEMG00000010578)	Rcn1 (ENSPEMG00000005747) #21	Pax6 (ENSPEMG00000017076) #22	Elp4 (ENSPEMG00000014413) #23	Immp1l (ENSPEMG00000012294) #24	Dnajc24 (ENSPEMG00000009627) #25	ENSPEMG00000028596	ENSPEMG00000027454	Mpped2 (ENSPEMG00000031263) #27	Arl14ep (ENSPEMG00000002547) #28	Fshb (ENSPEMG00000016453) #29	Kcna4 (ENSPEMG00000000419)	Mettl15 (ENSPEMG00000019783) #30	Kif18a (ENSPEMG00000019708) #31	Bdnf (ENSPEMG00000019659) #32	Lin7c (ENSPEMG00000019637) #33	Lgr4 (ENSPEMG00000019524) #34	Ccdc34 (ENSPEMG00000019443) #35
Prairie vole	MODERN SPECIES	81								Prrg4 (ENSMOCG00000021579) #17	ENSMOCG00000022602	ENSMOCG00000013836 #18	ENSMOCG00000012509	Eif3m (ENSMOCG00000020753) #19	Wt1 (ENSMOCG00000006225) #20	Them7 (ENSMOCG00000010419)	Rcn1 (ENSMOCG00000011897) #21	Pax6 (ENSMOCG00000017625) #22	Elp4 (ENSMOCG00000009942) #23	Immp1l (ENSMOCG00000000239) #24	Dnajc24 (ENSMOCG00000003631) #25	ENSMOCG00000009178	Mpped2 (ENSMOCG00000002797) #27	Arl14ep (ENSMOCG00000016817) #28	Fshb (ENSMOCG00000019709) #29	Kcna4 (ENSMOCG00000010908)	Mettl15 (ENSMOCG00000014905) #30	Kif18a (ENSMOCG00000019106) #31	ENSMOCG00000012556	BDNF (ENSMOCG00000000420) #32	Lin7c (ENSMOCG00000017113) #33	Lgr4 (ENSMOCG00000016806) #34	Ccdc34 (ENSMOCG00000007200) #35
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Chinese hamster chok1gshd	MODERN SPECIES	188	Fbxo3 (ENSCGRG00001019997) #7	ENSCGRG00001019416 #8	A930018P22Rik (ENSCGRG00001018837) #9	D430041D05Rik (ENSCGRG00001017776) #10	Hipk3 (ENSCGRG00001016245) #12	Cstf3 (ENSCGRG00001014773) #13	Tcp11l1 (ENSCGRG00001000909) #14	Depdc7 (ENSCGRG00001023950) #15	Qser1 (ENSCGRG00001023779) #16	Prrg4 (ENSCGRG00001023311) #17	ENSCGRG00001023007	EIF3M (ENSCGRG00001022289) #19	Wt1 (ENSCGRG00001005125) #20	Them7 (ENSCGRG00001001622)	Rcn1 (ENSCGRG00001000641) #21	Pax6 (ENSCGRG00001020702) #22	Elp4 (ENSCGRG00001019577) #23	Immp1l (ENSCGRG00001019289) #24	Dnajc24 (ENSCGRG00001018592) #25	ENSCGRG00001017684	ENSCGRG00001002326	Mpped2 (ENSCGRG00001024832) #27	Arl14ep (ENSCGRG00001024357) #28	Fshb (ENSCGRG00001023985) #29	ENSCGRG00001023822	Kcna4 (ENSCGRG00001001091)	ENSCGRG00001023034	ENSCGRG00001024320	Mettl15 (ENSCGRG00001023906) #30	Kif18a (ENSCGRG00001023500) #31	Bdnf (ENSCGRG00001022995) #32
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000005850 #7	ENSMAUG00000003722	A930018P22Rik (ENSMAUG00000002950) #9	D430041D05Rik (ENSMAUG00000010328) #10	Hipk3 (ENSMAUG00000006713) #12	Cstf3 (ENSMAUG00000002487) #13	Tcp11l1 (ENSMAUG00000021339) #14	Depdc7 (ENSMAUG00000004610) #15	Qser1 (ENSMAUG00000003616) #16	Prrg4 (ENSMAUG00000002732) #17	ENSMAUG00000009063 #18	Eif3m (ENSMAUG00000007848) #19	Wt1 (ENSMAUG00000008036) #20	Them7 (ENSMAUG00000004067)	Rcn1 (ENSMAUG00000003393) #21	Pax6 (ENSMAUG00000009509) #22	Elp4 (ENSMAUG00000004673) #23	Dnajc24 (ENSMAUG00000002785) #25	Mpped2 (ENSMAUG00000001559) #27	Fshb (ENSMAUG00000002330) #29	Kcna4 (ENSMAUG00000001742)	Mettl15 (ENSMAUG00000001233) #30	Kif18a (ENSMAUG00000001496) #31	Bdnf (ENSMAUG00000021360) #32	Lin7c (ENSMAUG00000021220) #33	Lgr4 (ENSMAUG00000008786) #34	Ccdc34 (ENSMAUG00000007534) #35	Bbox1 (ENSMAUG00000005985) #36	Fibin (ENSMAUG00000010806)	Slc5a12 (ENSMAUG00000004871)	Muc15 (ENSMAUG00000003135)
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Mus	ANCESTRAL SPECIES	1	ENSGT00940000153571.b #7	ENSGT00390000016309.j #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Mus_A	ANCESTRAL SPECIES		ENSGT00940000153571.b #7	ENSGT00390000016309.j #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000153571.b #7	ENSGT00390000016309.j #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153571.b #7	ENSGT00390000016309.j #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Steppe mouse	MODERN SPECIES	33								ENSMSIG00000014200 #18	ENSMSIG00000014230	Eif3m (ENSMSIG00000014235) #19	ENSMSIG00000014312	ENSMSIG00000014324	Wt1 (ENSMSIG00000014372) #20	Them7 (ENSMSIG00000014482)	ENSMSIG00000014497 #21	Pax6 (ENSMSIG00000014511) #22	Elp4 (ENSMSIG00000014816) #23	Immp1l (ENSMSIG00000014838) #24	ENSMSIG00000014856 #25	ENSMSIG00000014903	ENSMSIG00000015003	Mpped2 (ENSMSIG00000015026) #27	Arl14ep (ENSMSIG00000015063) #28	ENSMSIG00000015115	Fshb (ENSMSIG00000015133) #29
spretus	MODERN SPECIES	11	A930018P22Rik (MGP_SPRETEiJ_G0024935) #9	D430041D05Rik (MGP_SPRETEiJ_G0024936) #10	Hipk3 (MGP_SPRETEiJ_G0024937) #12	MGP_SPRETEiJ_G0024938	Cstf3 (MGP_SPRETEiJ_G0024939) #13	Tcp11l1 (MGP_SPRETEiJ_G0024940) #14	Pin1rt1 (MGP_SPRETEiJ_G0024941)	Depdc7 (MGP_SPRETEiJ_G0024942) #15	Qser1 (MGP_SPRETEiJ_G0024943) #16	Prrg4 (MGP_SPRETEiJ_G0024944) #17	Ccdc73 (MGP_SPRETEiJ_G0024945) #18	Eif3m (MGP_SPRETEiJ_G0024946) #19	Wt1 (MGP_SPRETEiJ_G0024947) #20	Them7 (MGP_SPRETEiJ_G0024948)	Rcn1 (MGP_SPRETEiJ_G0024949) #21	Pax6 (MGP_SPRETEiJ_G0024950) #22	Elp4 (MGP_SPRETEiJ_G0024951) #23	Immp1l (MGP_SPRETEiJ_G0024952) #24	Dnajc24 (MGP_SPRETEiJ_G0024953) #25	Mpped2 (MGP_SPRETEiJ_G0024954) #27	Arl14ep (MGP_SPRETEiJ_G0024955) #28	Fshb (MGP_SPRETEiJ_G0024956) #29	Kcna4 (MGP_SPRETEiJ_G0024957)	Trav4-2 (MGP_SPRETEiJ_G0002396)	Mettl15 (MGP_SPRETEiJ_G0024958) #30	Kif18a (MGP_SPRETEiJ_G0024959) #31	Bdnf (MGP_SPRETEiJ_G0024960) #32	Lin7c (MGP_SPRETEiJ_G0024961) #33	Lgr4 (MGP_SPRETEiJ_G0024962) #34	Ccdc34 (MGP_SPRETEiJ_G0024963) #35	MGP_SPRETEiJ_G0024964 #36
Mouse	MODERN SPECIES	11	Cd59a (ENSMUSG00000032679) #8	A930018P22Rik (ENSMUSG00000032671) #9	D430041D05Rik (ENSMUSG00000068373) #10	Hipk3 (ENSMUSG00000027177) #12	Cstf3 (ENSMUSG00000027176) #13	Tcp11l1 (ENSMUSG00000027175) #14	Pin1rt1 (ENSMUSG00000074997)	Depdc7 (ENSMUSG00000027173) #15	Qser1 (ENSMUSG00000074994) #16	Prrg4 (ENSMUSG00000027171) #17	Ccdc73 (ENSMUSG00000045106) #18	Eif3m (ENSMUSG00000027170) #19	Wt1 (ENSMUSG00000016458) #20	Them7 (ENSMUSG00000055312)	Rcn1 (ENSMUSG00000005973) #21	Pax6 (ENSMUSG00000027168) #22	Elp4 (ENSMUSG00000027167) #23	Immp1l (ENSMUSG00000042670) #24	Dnajc24 (ENSMUSG00000027166) #25	Mpped2 (ENSMUSG00000016386) #27	Arl14ep (ENSMUSG00000027122) #28	Fshb (ENSMUSG00000027120) #29	Kcna4 (ENSMUSG00000042604)	Mettl15 (ENSMUSG00000057234) #30	Kif18a (ENSMUSG00000027115) #31	Bdnf (ENSMUSG00000048482) #32	Lin7c (ENSMUSG00000027162) #33	Lgr4 (ENSMUSG00000050199) #34	Ccdc34 (ENSMUSG00000027160) #35	Bbox1 (ENSMUSG00000041660) #36	Fibin (ENSMUSG00000074971)
Ryukyu mouse	MODERN SPECIES	11	Fbxo3 (MGP_CAROLIEiJ_G0024022) #7	A930018P22Rik (MGP_CAROLIEiJ_G0024023) #9	MGP_CAROLIEiJ_G0024024 #10	Hipk3 (MGP_CAROLIEiJ_G0024025) #12	Cstf3 (MGP_CAROLIEiJ_G0024026) #13	Tcp11l1 (MGP_CAROLIEiJ_G0024027) #14	Pin1rt1 (MGP_CAROLIEiJ_G0024028)	Depdc7 (MGP_CAROLIEiJ_G0024029) #15	Qser1 (MGP_CAROLIEiJ_G0024030) #16	Prrg4 (MGP_CAROLIEiJ_G0024031) #17	Ccdc73 (MGP_CAROLIEiJ_G0024032) #18	Eif3m (MGP_CAROLIEiJ_G0024033) #19	Wt1 (MGP_CAROLIEiJ_G0024034) #20	Them7 (MGP_CAROLIEiJ_G0024035)	Rcn1 (MGP_CAROLIEiJ_G0024036) #21	Pax6 (MGP_CAROLIEiJ_G0024037) #22	Elp4 (MGP_CAROLIEiJ_G0024038) #23	Immp1l (MGP_CAROLIEiJ_G0024039) #24	Dnajc24 (MGP_CAROLIEiJ_G0024040) #25	Mpped2 (MGP_CAROLIEiJ_G0024041) #27	Arl14ep (MGP_CAROLIEiJ_G0024042) #28	Fshb (MGP_CAROLIEiJ_G0024043) #29	Kcna4 (MGP_CAROLIEiJ_G0024044)	Mettl15 (MGP_CAROLIEiJ_G0024045) #30	Kif18a (MGP_CAROLIEiJ_G0024046) #31	Bdnf (MGP_CAROLIEiJ_G0024047) #32	Lin7c (MGP_CAROLIEiJ_G0024048) #33	Lgr4 (MGP_CAROLIEiJ_G0024049) #34	Ccdc34 (MGP_CAROLIEiJ_G0024050) #35	Bbox1 (MGP_CAROLIEiJ_G0024051) #36	Fibin (MGP_CAROLIEiJ_G0024052)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025460 #8	A930018P22Rik (MGP_PahariEiJ_G0025461) #9	D430041D05Rik (MGP_PahariEiJ_G0025462) #10	Hipk3 (MGP_PahariEiJ_G0025463) #12	Cstf3 (MGP_PahariEiJ_G0025464) #13	Tcp11l1 (MGP_PahariEiJ_G0025465) #14	Pin1rt1 (MGP_PahariEiJ_G0025466)	Depdc7 (MGP_PahariEiJ_G0025467) #15	Qser1 (MGP_PahariEiJ_G0025468) #16	Prrg4 (MGP_PahariEiJ_G0025469) #17	Ccdc73 (MGP_PahariEiJ_G0025470) #18	Eif3m (MGP_PahariEiJ_G0025471) #19	Wt1 (MGP_PahariEiJ_G0025472) #20	Them7 (MGP_PahariEiJ_G0025473)	Rcn1 (MGP_PahariEiJ_G0025474) #21	Pax6 (MGP_PahariEiJ_G0025475) #22	Elp4 (MGP_PahariEiJ_G0025476) #23	Immp1l (MGP_PahariEiJ_G0025477) #24	Dnajc24 (MGP_PahariEiJ_G0025478) #25	Mpped2 (MGP_PahariEiJ_G0025479) #27	Arl14ep (MGP_PahariEiJ_G0025480) #28	Fshb (MGP_PahariEiJ_G0025481) #29	Kcna4 (MGP_PahariEiJ_G0025482)	Mettl15 (MGP_PahariEiJ_G0025483) #30	Kif18a (MGP_PahariEiJ_G0025484) #31	Bdnf (MGP_PahariEiJ_G0025485) #32	Lin7c (MGP_PahariEiJ_G0025486) #33	Lgr4 (MGP_PahariEiJ_G0025487) #34	Ccdc34 (MGP_PahariEiJ_G0025488) #35	Bbox1 (MGP_PahariEiJ_G0025489) #36	Fibin (MGP_PahariEiJ_G0025490)
Rat	MODERN SPECIES	13	RGD1563222 (ENSRNOG00000010963) #9	LOC100362814 (ENSRNOG00000011132) #10	Hipk3 (ENSRNOG00000011358) #12	Cstf3 (ENSRNOG00000012089) #13	Tcp11l1 (ENSRNOG00000042576) #14	Depdc7 (ENSRNOG00000012262) #15	Qser1 (ENSRNOG00000037514) #16	Prrg4 (ENSRNOG00000022710) #17	RGD1560017 (ENSRNOG00000029262)	Ccdc73 (ENSRNOG00000022660) #18	Eif3m (ENSRNOG00000012738) #19	ENSRNOG00000067112	Wt1 (ENSRNOG00000013074) #20	LOC691083 (ENSRNOG00000013437)	Rcn1 (ENSRNOG00000013452) #21	Pax6 (ENSRNOG00000004410) #22	AABR07053185.1 (ENSRNOG00000004787) #23	LOC108350427 (ENSRNOG00000031694)	Immp1l (ENSRNOG00000004829) #24	Dnajc24 (ENSRNOG00000004842) #25	Dcdc1-ps1 (ENSRNOG00000022178)	Mpped2 (ENSRNOG00000004863) #27	Arl14ep (ENSRNOG00000004891) #28	Fshb (ENSRNOG00000004898) #29	Kcna4 (ENSRNOG00000004918)	Mettl15 (ENSRNOG00000066683) #30	Kif18a (ENSRNOG00000005037) #31	Bdnf (ENSRNOG00000047466) #32	Lin7c (ENSRNOG00000062543) #33	AC135294.1 (ENSRNOG00000053696)	Lgr4 (ENSRNOG00000005715) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	492	ENSNGAG00000023376 #8	A930018P22Rik (ENSNGAG00000021497) #9	D430041D05Rik (ENSNGAG00000018241) #10	ENSNGAG00000013144 #12	Cstf3 (ENSNGAG00000010677) #13	Tcp11l1 (ENSNGAG00000020531) #14	Depdc7 (ENSNGAG00000021367) #15	Qser1 (ENSNGAG00000023077) #16	Prrg4 (ENSNGAG00000021040) #17	ENSNGAG00000023669	Eif3m (ENSNGAG00000006519) #19	Wt1 (ENSNGAG00000022234) #20	Them7 (ENSNGAG00000017585)	Rcn1 (ENSNGAG00000015767) #21	ENSNGAG00000014814	Pax6 (ENSNGAG00000017748) #22	Elp4 (ENSNGAG00000006201) #23	Immp1l (ENSNGAG00000023016) #24	ENSNGAG00000021710 #25	Mpped2 (ENSNGAG00000024208) #27	Arl14ep (ENSNGAG00000023974) #28	Fshb (ENSNGAG00000004419) #29	Kcna4 (ENSNGAG00000023446)	Mettl15 (ENSNGAG00000020743) #30	Kif18a (ENSNGAG00000024258) #31	Bdnf (ENSNGAG00000004750) #32	Lin7c (ENSNGAG00000003441) #33	ENSNGAG00000021530 #34	ENSNGAG00000021219 #34
Lesser Egyptian jerboa	MODERN SPECIES	79	ENSJJAG00000011063	Ehf (ENSJJAG00000023839)	Elf5 (ENSJJAG00000003357)	Cat (ENSJJAG00000012897)	Abtb2 (ENSJJAG00000014143)	Nat10 (ENSJJAG00000023042)	Lmo2 (ENSJJAG00000020848)	Fbxo3 (ENSJJAG00000022887) #7	D430041D05Rik (ENSJJAG00000019415) #10	Hipk3 (ENSJJAG00000000303) #12	Cstf3 (ENSJJAG00000018430) #13	Tcp11l1 (ENSJJAG00000002396) #14	Ccdc73 (ENSJJAG00000021731) #18	Eif3m (ENSJJAG00000011546) #19	ENSJJAG00000016942	Pax6 (ENSJJAG00000011854) #22	Elp4 (ENSJJAG00000020242) #23	Immp1l (ENSJJAG00000022649) #24	ENSJJAG00000023854 #25	ENSJJAG00000024039	Mpped2 (ENSJJAG00000003402) #27	Fshb (ENSJJAG00000011959) #29	Kcna4 (ENSJJAG00000017398)	ENSJJAG00000017907	Mettl15 (ENSJJAG00000019606) #30	Lgr4 (ENSJJAG00000019874) #34	ENSJJAG00000005395 #35	Bbox1 (ENSJJAG00000010708) #36	Fibin (ENSJJAG00000012158)	Slc5a12 (ENSJJAG00000015003)	Ano3 (ENSJJAG00000021499)
Kangaroo rat	MODERN SPECIES	365	A930018P22Rik (ENSDORG00000008868) #9	ENSDORG00000024985	D430041D05Rik (ENSDORG00000012272) #10	Hipk3 (ENSDORG00000008654) #12	Cstf3 (ENSDORG00000005898) #13	Tcp11l1 (ENSDORG00000005896) #14	Depdc7 (ENSDORG00000006010) #15	Qser1 (ENSDORG00000011190) #16	Prrg4 (ENSDORG00000011188) #17	Ccdc73 (ENSDORG00000004144) #18	ENSDORG00000004141 #19	Wt1 (ENSDORG00000013725) #20	Them7 (ENSDORG00000029154)	Rcn1 (ENSDORG00000006013) #21	ENSDORG00000025302	Pax6 (ENSDORG00000000254) #22	Elp4 (ENSDORG00000000252) #23	Immp1l (ENSDORG00000000250) #24	ENSDORG00000000248 #25	Mpped2 (ENSDORG00000030055) #27	Arl14ep (ENSDORG00000010212) #28	ENSDORG00000029216	Fshb (ENSDORG00000014836) #29	Kcna4 (ENSDORG00000027145)	ENSDORG00000001580 #30	Kif18a (ENSDORG00000010978) #31	Bdnf (ENSDORG00000026120) #32	Lin7c (ENSDORG00000024849) #33	Lgr4 (ENSDORG00000003213) #34	ENSDORG00000006760 #35	Bbox1 (ENSDORG00000009197) #36
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Hystricomorpha	ANCESTRAL SPECIES	50	ENSGT00940000160434	ENSGT00390000012069	ENSGT00950000182838.A.a.b	ENSGT00940000161708	ENSGT00940000156289	ENSGT00940000163661	ENSGT00940000156076.a.a.b	ENSGT00390000013104.l	ENSGT00940000157462.C	ENSGT01050000244956.a.a	ENSGT00940000160004	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.i #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Hystricomorpha_a	ANCESTRAL SPECIES	57	ENSGT00940000160434	ENSGT00390000012069	ENSGT00950000182838.A.a.b	ENSGT00940000161708	ENSGT00940000156289	ENSGT00940000163661	ENSGT00940000156076.a.a.b	ENSGT00390000013104.l	ENSGT00940000157462.C	ENSGT01050000244956.a.a	ENSGT00940000160004	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.i #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Hystricomorpha_b	ANCESTRAL SPECIES	69	ENSGT00940000160434	ENSGT00390000012069	ENSGT00950000182838.A.a.b	ENSGT00940000161708	ENSGT00940000156289	ENSGT00940000163661	ENSGT00940000156076.a.a.b	ENSGT00390000013104.l	ENSGT00940000157462.C	ENSGT01050000244956.a.a	ENSGT00940000160004	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.i #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Long-tailed chinchilla	MODERN SPECIES	183	TSPAN4 (ENSCLAG00000002061)	CHID1 (ENSCLAG00000001977)	AP2A2 (ENSCLAG00000001787)	ENSCLAG00000001717	ENSCLAG00000001697	MUC2 (ENSCLAG00000001620)	ENSCLAG00000001498	TOLLIP (ENSCLAG00000001459)	BRSK2 (ENSCLAG00000001376)	MOB2 (ENSCLAG00000001327)	DUSP8 (ENSCLAG00000001311)	CCDC73 (ENSCLAG00000001450) #18	EIF3M (ENSCLAG00000001396) #19	WT1 (ENSCLAG00000001374) #20	RCN1 (ENSCLAG00000001362) #21	PAX6 (ENSCLAG00000001303) #22	ELP4 (ENSCLAG00000001270) #23	IMMP1L (ENSCLAG00000001244) #24	DNAJC24 (ENSCLAG00000001222) #25	MPPED2 (ENSCLAG00000001209) #27	ARL14EP (ENSCLAG00000001182) #28	FSHB (ENSCLAG00000001148) #29	KCNA4 (ENSCLAG00000017433)	METTL15 (ENSCLAG00000001125) #30	KIF18A (ENSCLAG00000001083) #31	BDNF (ENSCLAG00000001053) #32	LIN7C (ENSCLAG00000001942) #33	LGR4 (ENSCLAG00000003211) #34	CCDC34 (ENSCLAG00000003164) #35	BBOX1 (ENSCLAG00000003118) #36	FIBIN (ENSCLAG00000003084)
Degu	MODERN SPECIES	134	CHID1 (ENSODEG00000014765)	AP2A2 (ENSODEG00000015034)	ENSODEG00000015762	MUC2 (ENSODEG00000015645)	ENSODEG00000015465	ENSODEG00000014796	ENSODEG00000015653	TOLLIP (ENSODEG00000015586)	BRSK2 (ENSODEG00000015187)	MOB2 (ENSODEG00000015616)	DUSP8 (ENSODEG00000015741)	ENSODEG00000015124	ENSODEG00000015300 #19	ENSODEG00000015471 #20	ENSODEG00000015443 #21	PAX6 (ENSODEG00000016035) #22	ELP4 (ENSODEG00000015514) #23	IMMP1L (ENSODEG00000015553) #24	DNAJC24 (ENSODEG00000015775) #25
Guinea pig	MODERN SPECIES	81											ENSCPOG00000024691	ENSCPOG00000038368	EIF3M (ENSCPOG00000003846) #19	WT1 (ENSCPOG00000033316) #20	RCN1 (ENSCPOG00000033869) #21	PAX6 (ENSCPOG00000007245) #22	ELP4 (ENSCPOG00000007237) #23	IMMP1L (ENSCPOG00000020043) #24	DNAJC24 (ENSCPOG00000005159) #25	MPPED2 (ENSCPOG00000034992) #27	ARL14EP (ENSCPOG00000007727) #28	FSHB (ENSCPOG00000007723) #29	KCNA4 (ENSCPOG00000039821)	ENSCPOG00000009931	GLRA1 (ENSCPOG00000013725)	G3BP1 (ENSCPOG00000006626)	ATOX1 (ENSCPOG00000034767)	SPARC (ENSCPOG00000025242)	FAT2 (ENSCPOG00000014431)	SLC36A1 (ENSCPOG00000014430)	ENSCPOG00000034856
Naked mole-rat female	MODERN SPECIES	24	OR52D1 (ENSHGLG00000020326)	UBQLN3 (ENSHGLG00000004972)	ENSHGLG00000006050	ENSHGLG00000020413	ENSHGLG00000020418	ENSHGLG00000040565	ENSHGLG00000033504	ENSHGLG00000008575	MOB2 (ENSHGLG00000007926)	ENSHGLG00000038023	ENSHGLG00000006208 #18	EIF3M (ENSHGLG00000005161) #19	ENSHGLG00000048619	WT1 (ENSHGLG00000004253) #20	RCN1 (ENSHGLG00000004070) #21	PAX6 (ENSHGLG00000010889) #22	ELP4 (ENSHGLG00000009198) #23	ENSHGLG00000040580	IMMP1L (ENSHGLG00000008856) #24	DNAJC24 (ENSHGLG00000008508) #25	MPPED2 (ENSHGLG00000008458) #27	ARL14EP (ENSHGLG00000008363) #28	FSHB (ENSHGLG00000043984) #29	KCNA4 (ENSHGLG00000011830)	METTL15 (ENSHGLG00000038346) #30	KIF18A (ENSHGLG00000010300) #31	ENSHGLG00000037469	BDNF (ENSHGLG00000008332) #32	ENSHGLG00000032654	LIN7C (ENSHGLG00000013510) #33	LGR4 (ENSHGLG00000010222) #34
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Marmotini	ANCESTRAL SPECIES	22	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b.j.b #21	ENSGT01010000222360.D.b.j.a #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a.f #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Marmotini_b	ANCESTRAL SPECIES	23	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b.j.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000166413	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a.f #33	ENSGT00940000157925 #34
Arctic ground squirrel	MODERN SPECIES	10	FBXO3 (ENSUPAG00010019358) #7	ENSUPAG00010019350 #8	C11orf91 (ENSUPAG00010019347) #9	KIAA1549L (ENSUPAG00010019291) #10	HIPK3 (ENSUPAG00010019217) #12	CSTF3 (ENSUPAG00010019186) #13	DEPDC7 (ENSUPAG00010019164) #15	QSER1 (ENSUPAG00010019111) #16	PRRG4 (ENSUPAG00010019105) #17	ENSUPAG00010019098	CCDC73 (ENSUPAG00010019088) #18	EIF3M (ENSUPAG00010019056) #19	WT1 (ENSUPAG00010018940) #20	ENSUPAG00010018932	RCN1 (ENSUPAG00010018924) #21	PAX6 (ENSUPAG00010018657) #22	ELP4 (ENSUPAG00010018640) #23	IMMP1L (ENSUPAG00010018631) #24	DNAJC24 (ENSUPAG00010018627) #25	ENSUPAG00010018615	ENSUPAG00010018602	MPPED2 (ENSUPAG00010018568) #27	ARL14EP (ENSUPAG00010018563) #28	FSHB (ENSUPAG00010018558) #29	KCNA4 (ENSUPAG00010018555)	ENSUPAG00010018551 #30
Squirrel	MODERN SPECIES	133	FBXO3 (ENSSTOG00000016405) #7	ENSSTOG00000011395 #8	C11orf91 (ENSSTOG00000026942) #9	KIAA1549L (ENSSTOG00000011381) #10	HIPK3 (ENSSTOG00000009714) #12	CSTF3 (ENSSTOG00000013306) #13	TCP11L1 (ENSSTOG00000013296) #14	DEPDC7 (ENSSTOG00000013289) #15	QSER1 (ENSSTOG00000027161) #16	PRRG4 (ENSSTOG00000002830) #17	ENSSTOG00000024817 #18	EIF3M (ENSSTOG00000010502) #19	WT1 (ENSSTOG00000023716) #20	ENSSTOG00000034266	ENSSTOG00000008930 #21	PAX6 (ENSSTOG00000003211) #22	ELP4 (ENSSTOG00000003187) #23	IMMP1L (ENSSTOG00000003179) #24	DNAJC24 (ENSSTOG00000003172) #25	ENSSTOG00000003155	MPPED2 (ENSSTOG00000015336) #27	ARL14EP (ENSSTOG00000022570) #28	FSHB (ENSSTOG00000000563) #29	KCNA4 (ENSSTOG00000020307)	METTL15 (ENSSTOG00000026358) #30	ENSSTOG00000029217	KIF18A (ENSSTOG00000013884) #31
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000008026 #8	C11orf91 (ENSMMMG00000008017) #9	KIAA1549L (ENSMMMG00000007942) #10	HIPK3 (ENSMMMG00000007810) #12	ENSMMMG00000007795	CSTF3 (ENSMMMG00000007765) #13	TCP11L1 (ENSMMMG00000007740) #14	QSER1 (ENSMMMG00000007677) #16	PRRG4 (ENSMMMG00000007662) #17	ENSMMMG00000007642	CCDC73 (ENSMMMG00000007616) #18	EIF3M (ENSMMMG00000007588) #19	WT1 (ENSMMMG00000007507) #20	ENSMMMG00000007498	ENSMMMG00000007458 #21	PAX6 (ENSMMMG00000007169) #22	ELP4 (ENSMMMG00000007140) #23	IMMP1L (ENSMMMG00000007121) #24	ENSMMMG00000007114 #25	ENSMMMG00000007096	ENSMMMG00000007066	MPPED2 (ENSMMMG00000007054) #27	ARL14EP (ENSMMMG00000007044) #28	FSHB (ENSMMMG00000007033) #29	KCNA4 (ENSMMMG00000006997)	METTL15 (ENSMMMG00000006976) #30	KIF18A (ENSMMMG00000006947) #31	BDNF (ENSMMMG00000006928) #32	ENSMMMG00000006917 #33	LGR4 (ENSMMMG00000006845) #34	CCDC34 (ENSMMMG00000006837) #35
Eurasian red squirrel	MODERN SPECIES	2	KIAA1549L (ENSSVLG00005005254) #10	HIPK3 (ENSSVLG00005005422) #12	ENSSVLG00005005475 ##37	CSTF3 (ENSSVLG00005005518) #13	TCP11L1 (ENSSVLG00005005675) #14	DEPDC7 (ENSSVLG00005005722) #15	QSER1 (ENSSVLG00005005823) #16	PRRG4 (ENSSVLG00005005895) #17	CCDC73 (ENSSVLG00005005944) #18	EIF3M (ENSSVLG00005006089) #19	WT1 (ENSSVLG00005006232) #20	ENSSVLG00005006549	RCN1 (ENSSVLG00005006575) #21	ENSSVLG00005006612	ENSSVLG00005006643	PAX6 (ENSSVLG00005006723) #22	ELP4 (ENSSVLG00005007005) #23	IMMP1L (ENSSVLG00005007051) #24	DNAJC24 (ENSSVLG00005007079) #25	DCDC1 (ENSSVLG00005007148) #26	ENSSVLG00005007367	MPPED2 (ENSSVLG00005007385) #27	ARL14EP (ENSSVLG00005007404) #28	FSHB (ENSSVLG00005007418) #29	KCNA4 (ENSSVLG00005007441)	METTL15 (ENSSVLG00005007460) #30	ENSSVLG00005007473	KIF18A (ENSSVLG00005007495) #31	BDNF (ENSSVLG00005007577) #32	ENSSVLG00005007614 #33	LGR4 (ENSSVLG00005007742) #34
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Suina	ANCESTRAL SPECIES	34	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Pig	MODERN SPECIES	10	ENSSSCG00000024791 #8	C11orf91 (ENSSSCG00000013310) #9	KIAA1549L (ENSSSCG00000013311) #10	HIPK3 (ENSSSCG00000013312) #12	CSTF3 (ENSSSCG00000040954) #13	TCP11L1 (ENSSSCG00000030326) #14	DEPDC7 (ENSSSCG00000042341) #15	QSER1 (ENSSSCG00000013314) #16	ENSSSCG00000042766	PRRG4 (ENSSSCG00000013313) #17	CCDC73 (ENSSSCG00000026433) #18	EIF3M (ENSSSCG00000013315) #19	WT1 (ENSSSCG00000013316) #20	ENSSSCG00000024950	RCN1 (ENSSSCG00000013318) #21	PAX6 (ENSSSCG00000013320) #22	ELP4 (ENSSSCG00000013321) #23	ENSSSCG00000041609	IMMP1L (ENSSSCG00000013322) #24	ENSSSCG00000051332	DNAJC24 (ENSSSCG00000026083) #25	DCDC1 (ENSSSCG00000013326) #26	MPPED2 (ENSSSCG00000013327) #27	ENSSSCG00000059744	ARL14EP (ENSSSCG00000039889) #28	FSHB (ENSSSCG00000013328) #29	KCNA4 (ENSSSCG00000013330)	ENSSSCG00000034018	ENSSSCG00000057311	METTL15 (ENSSSCG00000013331) #30	KIF18A (ENSSSCG00000013332) #31
Chacoan peccary	MODERN SPECIES	919	FBXO3 (ENSCWAG00000021882) #7	ENSCWAG00000021889 #8	C11orf91 (ENSCWAG00000021891) #9	KIAA1549L (ENSCWAG00000021895) #10	HIPK3 (ENSCWAG00000021902) #12	CSTF3 (ENSCWAG00000021904) #13	TCP11L1 (ENSCWAG00000021908) #14	DEPDC7 (ENSCWAG00000021910) #15	QSER1 (ENSCWAG00000021912) #16	PRRG4 (ENSCWAG00000021915) #17	ENSCWAG00000003968	EIF3M (ENSCWAG00000004093) #19	WT1 (ENSCWAG00000004225) #20	ENSCWAG00000004835	RCN1 (ENSCWAG00000004859) #21	PAX6 (ENSCWAG00000004896) #22	ELP4 (ENSCWAG00000005199) #23	IMMP1L (ENSCWAG00000005301) #24	DNAJC24 (ENSCWAG00000005348) #25	DCDC1 (ENSCWAG00000005401) #26	MPPED2 (ENSCWAG00000005645) #27	ARL14EP (ENSCWAG00000005680) #28	FSHB (ENSCWAG00000005697) #29	KCNA4 (ENSCWAG00000005719)	METTL15 (ENSCWAG00000005746) #30	KIF18A (ENSCWAG00000005809) #31	BDNF (ENSCWAG00000005893) #32	LIN7C (ENSCWAG00000005940) #33	LGR4 (ENSCWAG00000006018) #34	CCDC34 (ENSCWAG00000006126) #35	BBOX1 (ENSCWAG00000006153) #36
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Arabian camel	MODERN SPECIES	1	LMO2 (ENSCDRG00005018050)	FBXO3 (ENSCDRG00005018128) #7	C11orf91 (ENSCDRG00005018309) #9	KIAA1549L (ENSCDRG00005018372) #10	HIPK3 (ENSCDRG00005018642) #12	CSTF3 (ENSCDRG00005018752) #13	TCP11L1 (ENSCDRG00005018903) #14	DEPDC7 (ENSCDRG00005018963) #15	QSER1 (ENSCDRG00005019019) #16	PRRG4 (ENSCDRG00005019080) #17	CCDC73 (ENSCDRG00005019107) #18	EIF3M (ENSCDRG00005019201) #19	WT1 (ENSCDRG00005019279) #20	RCN1 (ENSCDRG00005019463) #21	ENSCDRG00005019471	PAX6 (ENSCDRG00005019478) #22	ELP4 (ENSCDRG00005019564) #23	IMMP1L (ENSCDRG00005019972) #24	DNAJC24 (ENSCDRG00005020002) #25	DCDC1 (ENSCDRG00005020030) #26	MPPED2 (ENSCDRG00005020111) #27	ENSCDRG00005020118	ARL14EP (ENSCDRG00005020128) #28	FSHB (ENSCDRG00005020139) #29	KCNA4 (ENSCDRG00005020142)	METTL15 (ENSCDRG00005006592) #30	KIF18A (ENSCDRG00005006694) #31	BDNF (ENSCDRG00005006820) #32	LIN7C (ENSCDRG00005006857) #33	LGR4 (ENSCDRG00005006913) #34	CCDC34 (ENSCDRG00005006981) #35
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000163780	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070.a.a	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.i #29	ENSGT00940000160051.j #29	ENSGT01100000263791.b.b	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070.a.a	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.i #29	ENSGT00940000160051.j #29	ENSGT01100000263791.b.b	ENSGT00940000162248	ENSGT00940000153112.E.f.a.a.b	ENSGT00390000014756 #30	ENSGT00940000159058 #31
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070.a.a	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.i #29	ENSGT00940000160051.j #29	ENSGT00940000162248	ENSGT00940000153112.E.f.a.a.b	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32
Dolphin	MODERN SPECIES	1855																PAX6 (ENSTTRG00000002399) #22	ELP4 (ENSTTRG00000002397) #23	IMMP1L (ENSTTRG00000002395) #24	DNAJC24 (ENSTTRG00000002394) #25
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070.a.a	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.i #29	ENSGT00940000160051.j #29	ENSGT00920000150779	ENSGT00940000162248	ENSGT00940000153112.E.f.a.a.b	ENSGT00390000014756 #30	ENSGT00940000159058 #31
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070.a.a	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.i #29	ENSGT00940000160051.j #29	ENSGT00920000150779	ENSGT00940000162248	ENSGT00940000153112.E.f.a.a.b	ENSGT00390000014756 #30	ENSGT00940000159058 #31
Beluga whale	MODERN SPECIES	32	CD59 (ENSDLEG00000013827) #8	CUNH11orf91 (ENSDLEG00000013835) #9	KIAA1549L (ENSDLEG00000013855) #10	HIPK3 (ENSDLEG00000013963) #12	CSTF3 (ENSDLEG00000014043) #13	TCP11L1 (ENSDLEG00000012541) #14	ENSDLEG00000012554 #15	QSER1 (ENSDLEG00000012566) #16	PRRG4 (ENSDLEG00000012601) #17	ENSDLEG00000012608	CCDC73 (ENSDLEG00000012619) #18	EIF3M (ENSDLEG00000012638) #19	WT1 (ENSDLEG00000012678) #20	ENSDLEG00000013019	RCN1 (ENSDLEG00000013030) #21	PAX6 (ENSDLEG00000013044) #22	ELP4 (ENSDLEG00000013063) #23	IMMP1L (ENSDLEG00000013097) #24	DNAJC24 (ENSDLEG00000013153) #25	ENSDLEG00000013169	ENSDLEG00000013195	MPPED2 (ENSDLEG00000013211) #27	ARL14EP (ENSDLEG00000013227) #28	FSHB (ENSDLEG00000013233) #29	ENSDLEG00000013244 #29	ENSDLEG00000013251	KCNA4 (ENSDLEG00000013264)	ENSDLEG00000013268	METTL15 (ENSDLEG00000013273) #30	KIF18A (ENSDLEG00000013284) #31	BDNF (ENSDLEG00000013310) #32
Narwhal	MODERN SPECIES	314	ENSMMNG00015019816 #8	C11orf91 (ENSMMNG00015019799) #9	KIAA1549L (ENSMMNG00015019709) #10	HIPK3 (ENSMMNG00015019654) #12	CSTF3 (ENSMMNG00015019509) #13	TCP11L1 (ENSMMNG00015019409) #14	DEPDC7 (ENSMMNG00015019350) #15	QSER1 (ENSMMNG00015019303) #16	PRRG4 (ENSMMNG00015019267) #17	CCDC73 (ENSMMNG00015019158) #18	EIF3M (ENSMMNG00015019072) #19	WT1 (ENSMMNG00015018931) #20	ENSMMNG00015018883	RCN1 (ENSMMNG00015018866) #21	ENSMMNG00015018848	PAX6 (ENSMMNG00015018671) #22	ELP4 (ENSMMNG00015018589) #23	IMMP1L (ENSMMNG00015018519) #24	DNAJC24 (ENSMMNG00015018498) #25	DCDC1 (ENSMMNG00015018365) #26	MPPED2 (ENSMMNG00015018327) #27	ARL14EP (ENSMMNG00015018311) #28	ENSMMNG00015018295 #29	ENSMMNG00015018272 #29	ENSMMNG00015018261	KCNA4 (ENSMMNG00015018252)	ENSMMNG00015018239	METTL15 (ENSMMNG00015018201) #30	KIF18A (ENSMMNG00015018163) #31	BDNF (ENSMMNG00015018131) #32	LIN7C (ENSMMNG00015018084) #33
Vaquita	MODERN SPECIES	19	ENSPSNG00000017059 #8	C11orf91 (ENSPSNG00000017031) #9	KIAA1549L (ENSPSNG00000016649) #10	HIPK3 (ENSPSNG00000016514) #12	CSTF3 (ENSPSNG00000016354) #13	TCP11L1 (ENSPSNG00000016253) #14	DEPDC7 (ENSPSNG00000016098) #15	ENSPSNG00000016011	QSER1 (ENSPSNG00000015773) #16	PRRG4 (ENSPSNG00000015680) #17	CCDC73 (ENSPSNG00000015385) #18	EIF3M (ENSPSNG00000015142) #19	WT1 (ENSPSNG00000014606) #20	ENSPSNG00000014483	RCN1 (ENSPSNG00000014435) #21	PAX6 (ENSPSNG00000014287) #22	ELP4 (ENSPSNG00000014087) #23	IMMP1L (ENSPSNG00000013988) #24	DNAJC24 (ENSPSNG00000013881) #25	DCDC1 (ENSPSNG00000013124) #26	MPPED2 (ENSPSNG00000012995) #27	ARL14EP (ENSPSNG00000012948) #28	ENSPSNG00000012904 #29	ENSPSNG00000012858 #29	ENSPSNG00000012815	KCNA4 (ENSPSNG00000012793)	ENSPSNG00000012775	METTL15 (ENSPSNG00000012699) #30	KIF18A (ENSPSNG00000012649) #31	BDNF (ENSPSNG00000012544) #32	LIN7C (ENSPSNG00000012453) #33
Sperm whale	MODERN SPECIES	7	C16H11orf91 (ENSPCTG00005016629) #9	KIAA1549L (ENSPCTG00005016154) #10	HIPK3 (ENSPCTG00005016025) #12	CSTF3 (ENSPCTG00005015434) #13	TCP11L1 (ENSPCTG00005015340) #14	DEPDC7 (ENSPCTG00005015057) #15	QSER1 (ENSPCTG00005014791) #16	ENSPCTG00005014763	PRRG4 (ENSPCTG00005014722) #17	CCDC73 (ENSPCTG00005014445) #18	EIF3M (ENSPCTG00005014201) #19	WT1 (ENSPCTG00005013164) #20	ENSPCTG00005013102	RCN1 (ENSPCTG00005013063) #21	ENSPCTG00005013016	PAX6 (ENSPCTG00005012818) #22	ELP4 (ENSPCTG00005012607) #23	IMMP1L (ENSPCTG00005012491) #24	DNAJC24 (ENSPCTG00005012456) #25	ENSPCTG00005012428	ENSPCTG00005012234	MPPED2 (ENSPCTG00005012156) #27	ARL14EP (ENSPCTG00005012121) #28	ENSPCTG00005012091 #29	ENSPCTG00005012055 #29	ENSPCTG00005012019	KCNA4 (ENSPCTG00005012001)	ENSPCTG00005011934	ENSPCTG00005011916	METTL15 (ENSPCTG00005011846) #30	KIF18A (ENSPCTG00005011764) #31
Blue whale	MODERN SPECIES	19	KIAA1549L (ENSBMSG00010012941) #10	HIPK3 (ENSBMSG00010012855) #12	CSTF3 (ENSBMSG00010012787) #13	TCP11L1 (ENSBMSG00010012759) #14	DEPDC7 (ENSBMSG00010012736) #15	QSER1 (ENSBMSG00010012662) #16	ENSBMSG00010012654	PRRG4 (ENSBMSG00010012641) #17	CCDC73 (ENSBMSG00010012604) #18	EIF3M (ENSBMSG00010012516) #19	WT1 (ENSBMSG00010012349) #20	ENSBMSG00010012175	RCN1 (ENSBMSG00010012165) #21	ENSBMSG00010012155	ENSBMSG00010012144	PAX6 (ENSBMSG00010012125) #22	ELP4 (ENSBMSG00010012038) #23	IMMP1L (ENSBMSG00010012015) #24	DNAJC24 (ENSBMSG00010011989) #25	ENSBMSG00010011976	ENSBMSG00010011962	MPPED2 (ENSBMSG00010011950) #27	ARL14EP (ENSBMSG00010011941) #28	ENSBMSG00010011934 #29	ENSBMSG00010011925 #29	ENSBMSG00010011921	ENSBMSG00010011912	ENSBMSG00010011898	METTL15 (ENSBMSG00010011883) #30	KIF18A (ENSBMSG00010011866) #31	BDNF (ENSBMSG00010011855) #32
Pecora	ANCESTRAL SPECIES	7	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000163780.f	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Yarkand deer	MODERN SPECIES		KIAA1549L (ENSCHYG00000009646) #10	HIPK3 (ENSCHYG00000009204) #12	ENSCHYG00000009147	CSTF3 (ENSCHYG00000008970) #13	ENSCHYG00000008683 #14	ENSCHYG00000008592 #16	ENSCHYG00000008567	ENSCHYG00000008538 #17	ENSCHYG00000008528	ENSCHYG00000008509	EIF3M (ENSCHYG00000008430) #19	WT1 (ENSCHYG00000008206) #20	ENSCHYG00000008166	RCN1 (ENSCHYG00000008136) #21	ENSCHYG00000008130	PAX6 (ENSCHYG00000007997) #22	ELP4 (ENSCHYG00000007588) #23	IMMP1L (ENSCHYG00000007517) #24	DNAJC24 (ENSCHYG00000007483) #25	DCDC1 (ENSCHYG00000007355) #26	MPPED2 (ENSCHYG00000007271) #27	ARL14EP (ENSCHYG00000007219) #28	ENSCHYG00000007199 #29	ENSCHYG00000007179	ENSCHYG00000007152 #29	KCNA4 (ENSCHYG00000007143)	ENSCHYG00000007126	ENSCHYG00000007105	METTL15 (ENSCHYG00000007039) #30	KIF18A (ENSCHYG00000006968) #31	ENSCHYG00000006950
Percora_a	ANCESTRAL SPECIES	6	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000163780.f	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Siberian musk deer	MODERN SPECIES	120	C11orf91 (ENSMMSG00000013918) #9	KIAA1549L (ENSMMSG00000013942) #10	HIPK3 (ENSMMSG00000014072) #12	CSTF3 (ENSMMSG00000014200) #13	TCP11L1 (ENSMMSG00000014300) #14	DEPDC7 (ENSMMSG00000014333) #15	QSER1 (ENSMMSG00000014389) #16	PRRG4 (ENSMMSG00000014458) #17	ENSMMSG00000014472	ENSMMSG00000014500 #19	WT1 (ENSMMSG00000014570) #20	ENSMMSG00000015458	RCN1 (ENSMMSG00000015474) #21	ENSMMSG00000015505	ENSMMSG00000015522	PAX6 (ENSMMSG00000015559) #22	ELP4 (ENSMMSG00000015874) #23	IMMP1L (ENSMMSG00000016058) #24	DNAJC24 (ENSMMSG00000016096) #25	DCDC1 (ENSMMSG00000000163) #26	ENSMMSG00000000304	MPPED2 (ENSMMSG00000000323) #27	ENSMMSG00000000355 #28	FSH-beta (ENSMMSG00000000367) #29	ENSMMSG00000000378 #29	ENSMMSG00000000387	KCNA4 (ENSMMSG00000000397)	ENSMMSG00000000417	METTL15 (ENSMMSG00000000430) #30	KIF18A (ENSMMSG00000000456) #31	BDNF (ENSMMSG00000000511) #32
Bovidae	ANCESTRAL SPECIES	6	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000163780.f	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.e #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Bovinae	ANCESTRAL SPECIES	26	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000005908.s.b	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586.i #28	ENSGT00940000160051.e #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Bos	ANCESTRAL SPECIES	25	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000005908.s.b	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586.i #28	ENSGT00940000160051.e #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Bos_b	ANCESTRAL SPECIES	12	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000005908.s.b	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586.i #28	ENSGT00940000160051.e #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Hybrid Bos Indicus	MODERN SPECIES	6	KIAA1549L (ENSBIXG00005014441) #10	HIPK3 (ENSBIXG00005001887) #12	CSTF3 (ENSBIXG00005001866) #13	TCP11L1 (ENSBIXG00005014197) #14	DEPDC7 (ENSBIXG00005014101) #15	QSER1 (ENSBIXG00005014048) #16	PRRG4 (ENSBIXG00005013948) #17	CCDC73 (ENSBIXG00005013923) #18	EIF3M (ENSBIXG00005013861) #19	WT1 (ENSBIXG00005005394) #20	ENSBIXG00005013578	RCN1 (ENSBIXG00005013559) #21	ENSBIXG00005005392	ENSBIXG00005001621	ELP4 (ENSBIXG00005013452) #23	PAX6 (ENSBIXG00005006118) #22	ENSBIXG00005013314	IMMP1L (ENSBIXG00005013302) #24	DNAJC24 (ENSBIXG00005013259) #25	DCDC1 (ENSBIXG00005005838) #26	MPPED2 (ENSBIXG00005012850) #27	ARL14EP (ENSBIXG00005012774) #28	FSHB (ENSBIXG00005012758) #29	KCNA4 (ENSBIXG00005012730)	METTL15 (ENSBIXG00005012653) #30	KIF18A (ENSBIXG00005006113) #31	BDNF (ENSBIXG00005012588) #32	LIN7C (ENSBIXG00005012533) #33	LGR4 (ENSBIXG00005001350) #34	CCDC34 (ENSBIXG00005012331) #35	BBOX1 (ENSBIXG00005000388) #36
Cow	MODERN SPECIES	6	C15H11orf91 (ENSBTAG00000027577) #9	KIAA1549L (ENSBTAG00000012846) #10	HIPK3 (ENSBTAG00000014884) #12	CSTF3 (ENSBTAG00000008617) #13	TCP11L1 (ENSBTAG00000008613) #14	DEPDC7 (ENSBTAG00000021809) #15	QSER1 (ENSBTAG00000014399) #16	PRRG4 (ENSBTAG00000020731) #17	ENSBTAG00000054030	ENSBTAG00000049128	EIF3M (ENSBTAG00000005338) #19	WT1 (ENSBTAG00000047268) #20	ENSBTAG00000052796	RCN1 (ENSBTAG00000047362) #21	ENSBTAG00000052762	PAX6 (ENSBTAG00000004561) #22	ELP4 (ENSBTAG00000023831) #23	IMMP1L (ENSBTAG00000000475) #24	DNAJC24 (ENSBTAG00000050888) #25	DCDC1 (ENSBTAG00000006060) #26	MPPED2 (ENSBTAG00000020956) #27	ARL14EP (ENSBTAG00000012417) #28	FSHB (ENSBTAG00000010889) #29	KCNA4 (ENSBTAG00000020793)	METTL15 (ENSBTAG00000003361) #30	KIF18A (ENSBTAG00000002117) #31	BDNF (ENSBTAG00000008134) #32	LIN7C (ENSBTAG00000001460) #33	LGR4 (ENSBTAG00000002606) #34	CCDC34 (ENSBTAG00000021346) #35	BBOX1 (ENSBTAG00000014847) #36
Bos_a	ANCESTRAL SPECIES	36	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000005908.s.b	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586.i #28	ENSGT00940000160051.e #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Domestic yak	MODERN SPECIES	4	C11orf91 (ENSBGRG00000018630) #9	KIAA1549L (ENSBGRG00000018177) #10	HIPK3 (ENSBGRG00000018060) #12	CSTF3 (ENSBGRG00000017836) #13	TCP11L1 (ENSBGRG00000017489) #14	DEPDC7 (ENSBGRG00000017219) #15	ENSBGRG00000017187	QSER1 (ENSBGRG00000016588) #16	PRRG4 (ENSBGRG00000016489) #17	CCDC73 (ENSBGRG00000015692) #18	EIF3M (ENSBGRG00000015042) #19	ENSBGRG00000014974	WT1 (ENSBGRG00000014474) #20	ENSBGRG00000014411	RCN1 (ENSBGRG00000014228) #21	PAX6 (ENSBGRG00000014058) #22	ELP4 (ENSBGRG00000012623) #23	IMMP1L (ENSBGRG00000012464) #24	DNAJC24 (ENSBGRG00000012396) #25	ENSBGRG00000012369	DCDC1 (ENSBGRG00000011881) #26	MPPED2 (ENSBGRG00000011746) #27	ENSBGRG00000011708 #28	ENSBGRG00000011682	FSHB (ENSBGRG00000011630) #29	KCNA4 (ENSBGRG00000011603)	METTL15 (ENSBGRG00000011464) #30	KIF18A (ENSBGRG00000011059) #31	BDNF (ENSBGRG00000010972) #32	LIN7C (ENSBGRG00000010637) #33	LGR4 (ENSBGRG00000020409) #34
Wild yak	MODERN SPECIES	353	ENSBMUG00000008356 #8	C11orf91 (ENSBMUG00000008344) #9	KIAA1549L (ENSBMUG00000008324) #10	HIPK3 (ENSBMUG00000008279) #12	CSTF3 (ENSBMUG00000008244) #13	TCP11L1 (ENSBMUG00000008189) #14	DEPDC7 (ENSBMUG00000008168) #15	QSER1 (ENSBMUG00000008156) #16	PRRG4 (ENSBMUG00000008106) #17	ENSBMUG00000008082	ENSBMUG00000008058	EIF3M (ENSBMUG00000008048) #19	WT1 (ENSBMUG00000007876) #20	ENSBMUG00000007811	ENSBMUG00000007800 #21	PAX6 (ENSBMUG00000007750) #22	ELP4 (ENSBMUG00000007669) #23	IMMP1L (ENSBMUG00000007643) #24	DNAJC24 (ENSBMUG00000007624) #25	ENSBMUG00000007617
American bison	MODERN SPECIES	3375	ENSBBBG00000012235 #8	C11orf91 (ENSBBBG00000012241) #9	KIAA1549L (ENSBBBG00000002311) #10	HIPK3 (ENSBBBG00000012315) #12	CSTF3 (ENSBBBG00000012345) #13	TCP11L1 (ENSBBBG00000012359) #14	DEPDC7 (ENSBBBG00000012370) #15	QSER1 (ENSBBBG00000012381) #16	PRRG4 (ENSBBBG00000012387) #17	ENSBBBG00000012391	ENSBBBG00000002355	EIF3M (ENSBBBG00000012413) #19	WT1 (ENSBBBG00000012437) #20	ENSBBBG00000012441	RCN1 (ENSBBBG00000012447) #21	PAX6 (ENSBBBG00000012730) #22	ELP4 (ENSBBBG00000012792) #23	IMMP1L (ENSBBBG00000002484) #24	DNAJC24 (ENSBBBG00000012813) #25	DCDC1 (ENSBBBG00000007887) #26	MPPED2 (ENSBBBG00000002499) #27	ARL14EP (ENSBBBG00000002503) #28	FSHB (ENSBBBG00000002507) #29	KCNA4 (ENSBBBG00000012840)	METTL15 (ENSBBBG00000002523) #30	KIF18A (ENSBBBG00000002525) #31	BDNF (ENSBBBG00000012862) #32	LIN7C (ENSBBBG00000012875) #33	LGR4 (ENSBBBG00000002549) #34	CCDC34 (ENSBBBG00000012927) #35	BBOX1 (ENSBBBG00000012954) #36
Caprinae	ANCESTRAL SPECIES	6	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000163780.f	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051.f #29	ENSGT00940000160051.e #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Goat	MODERN SPECIES	6	C11orf91 (ENSCHIG00000020265) #9	KIAA1549L (ENSCHIG00000010337) #10	HIPK3 (ENSCHIG00000022013) #12	CSTF3 (ENSCHIG00000016418) #13	TCP11L1 (ENSCHIG00000020989) #14	DEPDC7 (ENSCHIG00000027218) #15	QSER1 (ENSCHIG00000016327) #16	ENSCHIG00000025170	PRRG4 (ENSCHIG00000018240) #17	CCDC73 (ENSCHIG00000020414) #18	ENSCHIG00000012027 #19	WT1 (ENSCHIG00000013048) #20	ENSCHIG00000026487	RCN1 (ENSCHIG00000012978) #21	ENSCHIG00000019255	PAX6 (ENSCHIG00000023363) #22	ELP4 (ENSCHIG00000011057) #23	ENSCHIG00000011052 #24	DNAJC24 (ENSCHIG00000013207) #25	ENSCHIG00000013608	ENSCHIG00000013622	ENSCHIG00000025035	MPPED2 (ENSCHIG00000017309) #27	ENSCHIG00000020151	ARL14EP (ENSCHIG00000024817) #28	FSHB (ENSCHIG00000022859) #29	ENSCHIG00000023477 #29	KCNA4 (ENSCHIG00000001648)	METTL15 (ENSCHIG00000018028) #30	KIF18A (ENSCHIG00000002772) #31	BDNF (ENSCHIG00000006804) #32
Rambouillet Sheep	MODERN SPECIES	6	CD59 (ENSOARG00020011000) #8	C11orf91 (ENSOARG00020010944) #9	KIAA1549L (ENSOARG00020010529) #10	HIPK3 (ENSOARG00020010376) #12	CSTF3 (ENSOARG00020009771) #13	TCP11L1 (ENSOARG00020009692) #14	DEPDC7 (ENSOARG00020009610) #15	QSER1 (ENSOARG00020009269) #16	ENSOARG00020009223	PRRG4 (ENSOARG00020009169) #17	EIF3M (ENSOARG00020009058) #19	WT1 (ENSOARG00020008054) #20	ENSOARG00020007984	RCN1 (ENSOARG00020007939) #21	ENSOARG00020007894	PAX6 (ENSOARG00020007805) #22	ELP4 (ENSOARG00020011687) #23	IMMP1L (ENSOARG00020011578) #24	DNAJC24 (ENSOARG00020011539) #25	MPPED2 (ENSOARG00020011431) #27	ARL14EP (ENSOARG00020011384) #28	FSHB (ENSOARG00020011317) #29	ENSOARG00020011265 #29	ENSOARG00020011223	ENSOARG00020011181	ENSOARG00020011133	ENSOARG00020011107	ENSOARG00020011041	ENSOARG00020011017	ENSOARG00020010964	ENSOARG00020010947
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Carnivora	ANCESTRAL SPECIES	7	ENSGT00530000063472.b.b.a.b #10	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Felidae	ANCESTRAL SPECIES		ENSGT00530000063472.b.b.a.b #10	ENSGT00390000008610.a.b.a.a.a.a.b	ENSGT00940000155960.b #12	ENSGT00390000015489.r	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000002517.a.b.a	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Cat	MODERN SPECIES	241	KIAA1549L (ENSFCAG00000010134) #10	ENSFCAG00000048892	HIPK3 (ENSFCAG00000023639) #12	ENSFCAG00000045275	CSTF3 (ENSFCAG00000030711) #13	TCP11L1 (ENSFCAG00000026555) #14	DEPDC7 (ENSFCAG00000032004) #15	QSER1 (ENSFCAG00000015204) #16	PRRG4 (ENSFCAG00000015202) #17	CCDC73 (ENSFCAG00000025569) #18	EIF3M (ENSFCAG00000000310) #19	WT1 (ENSFCAG00000000308) #20	ENSFCAG00000035821	RCN1 (ENSFCAG00000029294) #21	ENSFCAG00000051580	PAX6 (ENSFCAG00000038150) #22	ELP4 (ENSFCAG00000030334) #23	IMMP1L (ENSFCAG00000028332) #24	DNAJC24 (ENSFCAG00000024845) #25	DCDC1 (ENSFCAG00000007915) #26	MPPED2 (ENSFCAG00000001706) #27	ARL14EP (ENSFCAG00000032975) #28	FSHB (ENSFCAG00000014631) #29	KCNA4 (ENSFCAG00000031951)	ENSFCAG00000006977	METTL15 (ENSFCAG00000025955) #30	KIF18A (ENSFCAG00000010217) #31	BDNF (ENSFCAG00000043571) #32	LIN7C (ENSFCAG00000034804) #33	LGR4 (ENSFCAG00000004891) #34	CCDC34 (ENSFCAG00000036696) #35
Panthera	ANCESTRAL SPECIES	13	ENSGT00990000213820	ENSGT00940000155960.b #12	ENSGT00390000015489.r	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000002517.a.b.a	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00930000152872	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Tiger	MODERN SPECIES	167	FBXO3 (ENSPTIG00000009375) #7	ENSPTIG00000009249	C11orf91 (ENSPTIG00000009247) #9	KIAA1549L (ENSPTIG00000008984) #10	HIPK3 (ENSPTIG00000008849) #12	CSTF3 (ENSPTIG00000008716) #13	TCP11L1 (ENSPTIG00000008558) #14	DEPDC7 (ENSPTIG00000008465) #15	QSER1 (ENSPTIG00000008208) #16	PRRG4 (ENSPTIG00000008151) #17	ENSPTIG00000008134	EIF3M (ENSPTIG00000007758) #19	WT1 (ENSPTIG00000007474) #20	ENSPTIG00000007330	RCN1 (ENSPTIG00000007248) #21	PAX6 (ENSPTIG00000006031) #22	ELP4 (ENSPTIG00000004445) #23	IMMP1L (ENSPTIG00000003292) #24	DNAJC24 (ENSPTIG00000002139) #25	ENSPTIG00000001756	DCDC1 (ENSPTIG00000021226) #26	MPPED2 (ENSPTIG00000021157) #27	ARL14EP (ENSPTIG00000021117) #28	FSHB (ENSPTIG00000021036) #29
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00390000008610.a.b.a.a.a.a.b	ENSGT00990000213820	ENSGT00940000155960.b #12	ENSGT00390000015489.r	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000002517.a.b.a	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00930000152872	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
lion	MODERN SPECIES	10	KIAA1549L (ENSPLOG00000006130) #10	ENSPLOG00000006097	HIPK3 (ENSPLOG00000006037) #12	ENSPLOG00000005985	CSTF3 (ENSPLOG00000005926) #13	TCP11L1 (ENSPLOG00000005895) #14	DEPDC7 (ENSPLOG00000005856) #15	QSER1 (ENSPLOG00000005797) #16	PRRG4 (ENSPLOG00000005765) #17	CCDC73 (ENSPLOG00000005703) #18	EIF3M (ENSPLOG00000005645) #19	WT1 (ENSPLOG00000005490) #20	ENSPLOG00000005418	ENSPLOG00000005402	RCN1 (ENSPLOG00000005388) #21	PAX6 (ENSPLOG00000005308) #22	ELP4 (ENSPLOG00000005266) #23	IMMP1L (ENSPLOG00000005227) #24	DNAJC24 (ENSPLOG00000005210) #25	DCDC1 (ENSPLOG00000005173) #26	MPPED2 (ENSPLOG00000005138) #27	ARL14EP (ENSPLOG00000005127) #28	FSHB (ENSPLOG00000005118) #29	KCNA4 (ENSPLOG00000005109)	ENSPLOG00000005087	METTL15 (ENSPLOG00000005061) #30	KIF18A (ENSPLOG00000005037) #31	ENSPLOG00000004982	BDNF (ENSPLOG00000004957) #32	LGR4 (ENSPLOG00000021734) #34	CCDC34 (ENSPLOG00000021675) #35
leopard	MODERN SPECIES	29	ENSPPRG00000013781	HIPK3 (ENSPPRG00000014334) #12	ENSPPRG00000014735	CSTF3 (ENSPPRG00000016852) #13	TCP11L1 (ENSPPRG00000018130) #14	DEPDC7 (ENSPPRG00000019342) #15	QSER1 (ENSPPRG00000024581) #16	PRRG4 (ENSPPRG00000024458) #17	ENSPPRG00000024407	ENSPPRG00000024223	EIF3M (ENSPPRG00000024020) #19	WT1 (ENSPPRG00000022915) #20	ENSPPRG00000022641	ENSPPRG00000000227	RCN1 (ENSPPRG00000000429) #21	PAX6 (ENSPPRG00000008832) #22	ELP4 (ENSPPRG00000013059) #23	IMMP1L (ENSPPRG00000014913) #24	DNAJC24 (ENSPPRG00000020110) #25	ENSPPRG00000020286	DCDC1 (ENSPPRG00000000758) #26	MPPED2 (ENSPPRG00000002081) #27	ARL14EP (ENSPPRG00000002303) #28	FSHB (ENSPPRG00000002537) #29	KCNA4 (ENSPPRG00000015146)	METTL15 (ENSPPRG00000003466) #30	KIF18A (ENSPPRG00000004106) #31	ENSPPRG00000004181	BDNF (ENSPPRG00000005556) #32	LIN7C (ENSPPRG00000006231) #33	LGR4 (ENSPPRG00000007559) #34
Caniformia	ANCESTRAL SPECIES	25	ENSGT00530000063472.b.b.a.b #10	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Canidae	ANCESTRAL SPECIES	32	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a.d #27	ENSGT00940000156586 #28	ENSGT01060000248581.A.a.a.b.a.a.a	ENSGT01060000248581.A.a.a.b.b	ENSGT01060000248581.A.a.a.b.a.b	ENSGT01060000248581.A.a.a.b.a.a.b	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00940000165220	ENSGT00940000164403	ENSGT00940000163523
Red fox	MODERN SPECIES	94	C11orf91 (ENSVVUG00000014887) #9	KIAA1549L (ENSVVUG00000014889) #10	HIPK3 (ENSVVUG00000014907) #12	CSTF3 (ENSVVUG00000014938) #13	TCP11L1 (ENSVVUG00000016160) #14	DEPDC7 (ENSVVUG00000016168) #15	QSER1 (ENSVVUG00000016190) #16	PRRG4 (ENSVVUG00000016211) #17	CCDC73 (ENSVVUG00000016222) #18	EIF3M (ENSVVUG00000016291) #19	WT1 (ENSVVUG00000016328) #20	ENSVVUG00000016450	ENSVVUG00000016451 #21	ENSVVUG00000016460	ENSVVUG00000016473	PAX6 (ENSVVUG00000016482) #22	ELP4 (ENSVVUG00000016492) #23	IMMP1L (ENSVVUG00000016517) #24	DNAJC24 (ENSVVUG00000016533) #25	DCDC1 (ENSVVUG00000016561) #26	MPPED2 (ENSVVUG00000016635) #27	ARL14EP (ENSVVUG00000016639) #28	ENSVVUG00000016643	ENSVVUG00000016645	OR10V1 (ENSVVUG00000016647)	ENSVVUG00000016653	PATL1 (ENSVVUG00000016668)	OSBP (ENSVVUG00000016806)	ENSVVUG00000016920	OR4D9 (ENSVVUG00000016923)	OR4D11 (ENSVVUG00000016934)
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a.c #27	ENSGT00390000007681.a.d #27	ENSGT00940000156586 #28	ENSGT01060000248581.A.a.a.b.a.a.a	ENSGT01060000248581.A.a.a.b.b	ENSGT01060000248581.A.a.a.b.a.b	ENSGT01060000248581.A.a.a.b.a.a.b	ENSGT00520000055649.a	ENSGT00940000156164	ENSGT00940000165220
Dingo	MODERN SPECIES	69	KIAA1549L (ENSCAFG00020004434) #10	ENSCAFG00020004425	ENSCAFG00020004418	HIPK3 (ENSCAFG00020003548) #12	CSTF3 (ENSCAFG00020002715) #13	TCP11L1 (ENSCAFG00020002659) #14	DEPDC7 (ENSCAFG00020002651) #15	QSER1 (ENSCAFG00020002643) #16	PRRG4 (ENSCAFG00020002639) #17	ENSCAFG00020002628	EIF3M (ENSCAFG00020002623) #19	WT1 (ENSCAFG00020002366) #20	ENSCAFG00020002349	RCN1 (ENSCAFG00020002342) #21	ENSCAFG00020002338	PAX6 (ENSCAFG00020002118) #22	ELP4 (ENSCAFG00020002097) #23	IMMP1L (ENSCAFG00020002087) #24	DNAJC24 (ENSCAFG00020002081) #25	ENSCAFG00020002073	ENSCAFG00020002035	ENSCAFG00020002028 #27	MPPED2 (ENSCAFG00020002024) #27	ARL14EP (ENSCAFG00020002022) #28	ENSCAFG00020002011	ENSCAFG00020002007	OR10V1 (ENSCAFG00020002002)	ENSCAFG00020001988	PATL1 (ENSCAFG00020001648)	OSBP (ENSCAFG00020001363)	ENSCAFG00020001346
Dog	MODERN SPECIES	9	KIAA1549L (ENSCAFG00845025341) #10	ENSCAFG00845025562	HIPK3 (ENSCAFG00845025615) #12	CSTF3 (ENSCAFG00845026044) #13	TCP11L1 (ENSCAFG00845026199) #14	ENSCAFG00845026364	DEPDC7 (ENSCAFG00845026430) #15	QSER1 (ENSCAFG00845026553) #16	PRRG4 (ENSCAFG00845026825) #17	CCDC73 (ENSCAFG00845026876) #18	EIF3M (ENSCAFG00845027029) #19	WT1 (ENSCAFG00845027359) #20	ENSCAFG00845027468	RCN1 (ENSCAFG00845027499) #21	ENSCAFG00845027550	PAX6 (ENSCAFG00845027665) #22	DNAJC24 (ENSCAFG00845028184) #23	IMMP1L (ENSCAFG00845028483) #24	DCDC1 (ENSCAFG00845028783) #26	ENSCAFG00845029393	MPPED2 (ENSCAFG00845029423) #27	ARL14EP (ENSCAFG00845016706) #28	ENSCAFG00845016748	ENSCAFG00845016778	OR10V1 (ENSCAFG00845016830)	OR10V4 (ENSCAFG00845016884)	PATL1 (ENSCAFG00845016925)	OSBP (ENSCAFG00845017001)	OR4D9D (ENSCAFG00845017092)	OR4D9 (ENSCAFG00845017124)	ENSCAFG00845017153
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Ursidae	ANCESTRAL SPECIES	2	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456.j #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Ursus	ANCESTRAL SPECIES	69	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456.j #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
American black bear	MODERN SPECIES	678													ENSUAMG00000000461	ENSUAMG00000000458 #21	ENSUAMG00000000377	ENSUAMG00000000105 #22
Polar bear	MODERN SPECIES	141	FBXO3 (ENSUMAG00000018845) #7	ENSUMAG00000018860 #8	KIAA1549L (ENSUMAG00000018865) #10	HIPK3 (ENSUMAG00000018921) #12	CSTF3 (ENSUMAG00000018971) #13	TCP11L1 (ENSUMAG00000019415) #14	DEPDC7 (ENSUMAG00000019420) #15	QSER1 (ENSUMAG00000019428) #16	PRRG4 (ENSUMAG00000019477) #17	ENSUMAG00000019484	ENSUMAG00000019488 #18	EIF3M (ENSUMAG00000019493) #19	WT1 (ENSUMAG00000019514) #20	ENSUMAG00000019525	RCN1 (ENSUMAG00000019528) #21	PAX6 (ENSUMAG00000019552) #22	ELP4 (ENSUMAG00000019620) #23	IMMP1L (ENSUMAG00000019633) #24	DNAJC24 (ENSUMAG00000019635) #25	ENSUMAG00000019640	ENSUMAG00000019643	ENSUMAG00000019647	MPPED2 (ENSUMAG00000019653) #27	ARL14EP (ENSUMAG00000019655) #28	FSHB (ENSUMAG00000019657) #29	KCNA4 (ENSUMAG00000019660)	METTL15 (ENSUMAG00000019671) #30	KIF18A (ENSUMAG00000019675) #31	LIN7C (ENSUMAG00000019709) #33	LGR4 (ENSUMAG00000019714) #34	ENSUMAG00000019734 #35
Giant Panda	MODERN SPECIES	7	C11orf91 (ENSAMEG00000007331) #9	KIAA1549L (ENSAMEG00000007317) #10	HIPK3 (ENSAMEG00000007251) #12	CSTF3 (ENSAMEG00000007187) #13	TCP11L1 (ENSAMEG00000007130) #14	DEPDC7 (ENSAMEG00000007096) #15	QSER1 (ENSAMEG00000007081) #16	PRRG4 (ENSAMEG00000025563) #17	ENSAMEG00000025855	ENSAMEG00000025566	ENSAMEG00000007045 #18	EIF3M (ENSAMEG00000007020) #19	WT1 (ENSAMEG00000006957) #20	ENSAMEG00000006954	ENSAMEG00000006937 #21	PAX6 (ENSAMEG00000006908) #22	ELP4 (ENSAMEG00000006893) #23	IMMP1L (ENSAMEG00000006876) #24	DNAJC24 (ENSAMEG00000006875) #25	DCDC1 (ENSAMEG00000003642) #26	MPPED2 (ENSAMEG00000003656) #27	ARL14EP (ENSAMEG00000030847) #28	FSHB (ENSAMEG00000030112) #29	KCNA4 (ENSAMEG00000015827)	METTL15 (ENSAMEG00000014575) #30	KIF18A (ENSAMEG00000014549) #31	BDNF (ENSAMEG00000014544) #32	LIN7C (ENSAMEG00000014531) #33	LGR4 (ENSAMEG00000014496) #34	CCDC34 (ENSAMEG00000014485) #35	BBOX1 (ENSAMEG00000014478) #36
Mustelinae	ANCESTRAL SPECIES	30	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Ferret	MODERN SPECIES	213	LMO2 (ENSMPUG00000011529)	FBXO3 (ENSMPUG00000011527) #7	ENSMPUG00000011525 #8	KIAA1549L (ENSMPUG00000011479) #10	HIPK3 (ENSMPUG00000011469) #12	CSTF3 (ENSMPUG00000011457) #13	TCP11L1 (ENSMPUG00000011348) #14	DEPDC7 (ENSMPUG00000011342) #15	QSER1 (ENSMPUG00000011334) #16	PRRG4 (ENSMPUG00000011329) #17	CCDC73 (ENSMPUG00000011318) #18	EIF3M (ENSMPUG00000011311) #19	WT1 (ENSMPUG00000011307) #20	ENSMPUG00000011303	RCN1 (ENSMPUG00000011298) #21	PAX6 (ENSMPUG00000011295) #22	ELP4 (ENSMPUG00000011290) #23	IMMP1L (ENSMPUG00000011284) #24	DNAJC24 (ENSMPUG00000011280) #25	DCDC1 (ENSMPUG00000011258) #26	ENSMPUG00000011248	MPPED2 (ENSMPUG00000011240) #27	ARL14EP (ENSMPUG00000011235) #28	FSHB (ENSMPUG00000011223) #29	KCNA4 (ENSMPUG00000019959)	METTL15 (ENSMPUG00000011218) #30	KIF18A (ENSMPUG00000011209) #31	BDNF (ENSMPUG00000011206) #32	LIN7C (ENSMPUG00000011201) #33	LGR4 (ENSMPUG00000011192) #34	CCDC34 (ENSMPUG00000011177) #35
American mink	MODERN SPECIES	151		ENSNVIG00000004263 #10	HIPK3 (ENSNVIG00000004290) #12	CSTF3 (ENSNVIG00000004364) #13	TCP11L1 (ENSNVIG00000004458) #14	DEPDC7 (ENSNVIG00000004469) #15	QSER1 (ENSNVIG00000004484) #16	PRRG4 (ENSNVIG00000004513) #17	CCDC73 (ENSNVIG00000004533) #18	EIF3M (ENSNVIG00000004595) #19	WT1 (ENSNVIG00000004664) #20	ENSNVIG00000004794	RCN1 (ENSNVIG00000004807) #21	ENSNVIG00000004817	ENSNVIG00000004822	PAX6 (ENSNVIG00000004848) #22	ELP4 (ENSNVIG00000005118) #23	ENSNVIG00000005197 #24	DNAJC24 (ENSNVIG00000005225) #25	ENSNVIG00000005251	DCDC1 (ENSNVIG00000005262) #26	MPPD2 (ENSNVIG00000005372) #27	ARL14EP (ENSNVIG00000005391) #28	FSHB (ENSNVIG00000005394) #29	KCNA4 (ENSNVIG00000005408)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Greater horseshoe bat	MODERN SPECIES	2	C11orf91 (ENSRFEG00010005190) #9	KIAA1549L (ENSRFEG00010005232) #10	HIPK3 (ENSRFEG00010005299) #12	ENSRFEG00010005340	CSTF3 (ENSRFEG00010005374) #13	TCP11L1 (ENSRFEG00010005436) #14	DEPDC7 (ENSRFEG00010005465) #15	QSER1 (ENSRFEG00010005548) #16	PRRG4 (ENSRFEG00010005637) #17	ENSRFEG00010005674	CCDC73 (ENSRFEG00010005732) #18	EIF3M (ENSRFEG00010005855) #19	WT1 (ENSRFEG00010006043) #20	ENSRFEG00010006334	RCN1 (ENSRFEG00010006353) #21	PAX6 (ENSRFEG00010006431) #22	ELP4 (ENSRFEG00010006621) #23	IMMP1L (ENSRFEG00010006767) #24	DNAJC24 (ENSRFEG00010006881) #25	DCDC1 (ENSRFEG00010006973) #26	MPPED2 (ENSRFEG00010010324) #27	ENSRFEG00010010397 #28	FSHB (ENSRFEG00010010479) #29	KCNA4 (ENSRFEG00010010528)	METTL15 (ENSRFEG00010010548) #30	KIF18A (ENSRFEG00010010630) #31	BDNF (ENSRFEG00010010710) #32	LIN7C (ENSRFEG00010010811) #33	LGR4 (ENSRFEG00010010922) #34	CCDC34 (ENSRFEG00010011266) #35	BBOX1 (ENSRFEG00010011317) #36
Microbat	MODERN SPECIES	1029					MS4A5 (ENSMLUG00000006587)	MS4A1 (ENSMLUG00000017521)	MS4A13 (ENSMLUG00000002656)	ENSMLUG00000009884	ENSMLUG00000029088	ENSMLUG00000023840	ENSMLUG00000024090	CCDC73 (ENSMLUG00000027187) #18	EIF3M (ENSMLUG00000014727) #19	WT1 (ENSMLUG00000027523) #20	RCN1 (ENSMLUG00000009140) #21	PAX6 (ENSMLUG00000006517) #22	ELP4 (ENSMLUG00000006507) #23	ENSMLUG00000006504 #24	DNAJC24 (ENSMLUG00000006498) #25	ENSMLUG00000012298	ENSMLUG00000012290 #27	ARL14EP (ENSMLUG00000012286) #28	FSHB (ENSMLUG00000015565) #29	KCNA4 (ENSMLUG00000015561)	ENSMLUG00000023302	ENSMLUG00000010965	METTL15 (ENSMLUG00000029456) #30	KIF18A (ENSMLUG00000003355) #31	BDNF (ENSMLUG00000015937) #32	LIN7C (ENSMLUG00000015928) #33	LGR4 (ENSMLUG00000015911) #34
Megabat	MODERN SPECIES	2881																PAX6 (ENSPVAG00000015538) #22	ENSPVAG00000015537 #23	IMMP1L (ENSPVAG00000015535) #24	DNAJC24 (ENSPVAG00000015534) #25	ENSPVAG00000015533
Equus	ANCESTRAL SPECIES	40									ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00410000028070	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Donkey	MODERN SPECIES	12					ENSEASG00005026387	ENSEASG00005030749	ENSEASG00005028007	ENSEASG00005037903	ENSEASG00005013549 #16	PRRG4 (ENSEASG00005028992) #17	CCDC73 (ENSEASG00005013539) #18	EIF3M (ENSEASG00005013531) #19	WT1 (ENSEASG00005013477) #20	RCN1 (ENSEASG00005013468) #21	ENSEASG00005034648	PAX6 (ENSEASG00005013453) #22	ELP4 (ENSEASG00005013447) #23	IMMP1L (ENSEASG00005013445) #24	DNAJC24 (ENSEASG00005031202) #25	DCDC1 (ENSEASG00005013436) #26	MPPED2 (ENSEASG00005013433) #27	ARL14EP (ENSEASG00005013428) #28	ENSEASG00005013426 #29	ENSEASG00005029412 #29	KCNA4 (ENSEASG00005036876)	METTL15 (ENSEASG00005013417) #30	KIF18A (ENSEASG00005013406) #31	BDNF (ENSEASG00005013402) #32	LIN7C (ENSEASG00005023753) #33	LGR4 (ENSEASG00005013389) #34	CCDC34 (ENSEASG00005013386) #35
Horse	MODERN SPECIES	28									QSER1 (ENSECAG00000007655) #16	PRRG4 (ENSECAG00000006554) #17	EIF3M (ENSECAG00000022640) #19	CCDC73 (ENSECAG00000006204) #18	WT1 (ENSECAG00000022308) #20	ENSECAG00000033892	RCN1 (ENSECAG00000022068) #21	PAX6 (ENSECAG00000021000) #22	ELP4 (ENSECAG00000020658) #23	IMMP1L (ENSECAG00000020512) #24	DNAJC24 (ENSECAG00000020499) #25	DCDC1 (ENSECAG00000020002) #26	MPPED2 (ENSECAG00000019460) #27	ARL14EP (ENSECAG00000019214) #28	ENSECAG00000052220	FSHB (ENSECAG00000019116) #29	ENSECAG00000019113 #29	KCNA4 (ENSECAG00000005252)	METTL15 (ENSECAG00000018326) #30	KIF18A (ENSECAG00000016155) #31	BDNF (ENSECAG00000015952) #32	LIN7C (ENSECAG00000015795) #33	LGR4 (ENSECAG00000013111) #34
Eulipotyphla	ANCESTRAL SPECIES	1005																ENSGT00940000155391.a #22	ENSGT00390000001443 #23
Common shrew	MODERN SPECIES	789																PAX6 (ENSSARG00000011424) #22	ELP4 (ENSSARG00000011414) #23
Hedgehog	MODERN SPECIES	1252																PAX6 (ENSEEUG00000014014) #22	ENSEEUG00000013872 #23
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000160199	ENSGT00940000153571.b #7	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000153438.a	ENSGT00940000160199	ENSGT00940000153571.b #7	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00940000153438.a	ENSGT00940000160199	ENSGT00940000153571.b #7	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Elephant	MODERN SPECIES	209	LMO2 (ENSLAFG00000008865)	ENSLAFG00000026975	FBXO3 (ENSLAFG00000004396) #7	C11orf91 (ENSLAFG00000006492) #9	KIAA1549L (ENSLAFG00000022670) #10	HIPK3 (ENSLAFG00000013962) #12	CSTF3 (ENSLAFG00000008712) #13	TCP11L1 (ENSLAFG00000008708) #14	DEPDC7 (ENSLAFG00000008704) #15	QSER1 (ENSLAFG00000029805) #16	PRRG4 (ENSLAFG00000005201) #17	CCDC73 (ENSLAFG00000009655) #18	EIF3M (ENSLAFG00000021669) #19	WT1 (ENSLAFG00000006160) #20	RCN1 (ENSLAFG00000010550) #21	PAX6 (ENSLAFG00000015520) #22	ELP4 (ENSLAFG00000011437) #23	ENSLAFG00000013448 #24	ENSLAFG00000001535	ENSLAFG00000032554	MPPED2 (ENSLAFG00000001426) #27	ARL14EP (ENSLAFG00000018240) #28	FSHB (ENSLAFG00000013498) #29	KCNA4 (ENSLAFG00000015672)	METTL15 (ENSLAFG00000014663) #30	KIF18A (ENSLAFG00000011529) #31	BDNF (ENSLAFG00000008144) #32	LIN7C (ENSLAFG00000010063) #33	LGR4 (ENSLAFG00000002256) #34	ENSLAFG00000021531 #35	BBOX1 (ENSLAFG00000018069) #36
Hyrax	MODERN SPECIES	910																PAX6 (ENSPCAG00000005165) #22	ENSPCAG00000005064 #23
Tenrec	MODERN SPECIES	8776																PAX6 (ENSETEG00000002655) #22
Xenarthra	ANCESTRAL SPECIES	30	ENSGT00940000153438.a	ENSGT00940000160199	ENSGT00940000153571.b #7	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29
Sloth	MODERN SPECIES	996																ENSCHOG00000001954 #22	ELP4 (ENSCHOG00000001945) #23
Armadillo	MODERN SPECIES	307	LMO2 (ENSDNOG00000032989)	FBXO3 (ENSDNOG00000006486) #7	C11orf91 (ENSDNOG00000048791) #9	KIAA1549L (ENSDNOG00000014287) #10	HIPK3 (ENSDNOG00000018007) #12	CSTF3 (ENSDNOG00000007366) #13	TCP11L1 (ENSDNOG00000012436) #14	QSER1 (ENSDNOG00000046771) #16	PRRG4 (ENSDNOG00000025156) #17	CCDC73 (ENSDNOG00000012922) #18	EIF3M (ENSDNOG00000012904) #19	ENSDNOG00000048344	WT1 (ENSDNOG00000003652) #20	ENSDNOG00000045369	ENSDNOG00000044782 #21	PAX6 (ENSDNOG00000000761) #22	ELP4 (ENSDNOG00000000757) #23	ENSDNOG00000035466 #24	DNAJC24 (ENSDNOG00000013512) #25	ENSDNOG00000018185	ENSDNOG00000034870	ENSDNOG00000041374	MPPED2 (ENSDNOG00000047492) #27	ENSDNOG00000043073	ARL14EP (ENSDNOG00000048452) #28	FSHB (ENSDNOG00000014139) #29
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.a #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.a #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Diprotodontia	ANCESTRAL SPECIES	46	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.a #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248
Diprotodontia_a	ANCESTRAL SPECIES	46	ENSGT00940000153571.b #7	ENSGT00390000016309 #8	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.a #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248
Common wonbat	MODERN SPECIES	1058	LMO2 (ENSVURG00010012705)	FBXO3 (ENSVURG00010012709) #7	ENSVURG00010012719 #8	KIAA1549L (ENSVURG00010012738) #10	HIPK3 (ENSVURG00010012975) #12	ENSVURG00010013024 #13	TCP11L1 (ENSVURG00010013070) #14	DEPDC7 (ENSVURG00010013084) #15	QSER1 (ENSVURG00010013101) #16	PRRG4 (ENSVURG00010013112) #17	ENSVURG00010013117	EIF3M (ENSVURG00010013122) #19	WT1 (ENSVURG00010013148) #20	RCN1 (ENSVURG00010013320) #21	ENSVURG00010013326	PAX6 (ENSVURG00010013364) #22	ELP4 (ENSVURG00010014242) #23	IMMP1L (ENSVURG00010014340) #24	DNAJC24 (ENSVURG00010014357) #25	ENSVURG00010014371	MPPED2 (ENSVURG00010014383) #27	ARL14EP (ENSVURG00010014405) #28	FSHB (ENSVURG00010014414) #29	KCNA4 (ENSVURG00010014424)
koala	MODERN SPECIES	148	FBXO3 (ENSPCIG00000026386) #7	ENSPCIG00000031932 #8	C11orf91 (ENSPCIG00000026389) #9	KIAA1549L (ENSPCIG00000026390) #10	HIPK3 (ENSPCIG00000026397) #12	ENSPCIG00000026406 #13	TCP11L1 (ENSPCIG00000033301) #14	DEPDC7 (ENSPCIG00000009976) #15	QSER1 (ENSPCIG00000024688) #16	PRRG4 (ENSPCIG00000024686) #17	ENSPCIG00000004235	ENSPCIG00000004250 #18	ENSPCIG00000004258 #19	WT1 (ENSPCIG00000034617) #20	RCN1 (ENSPCIG00000004288) #21	PAX6 (ENSPCIG00000012545) #22	ELP4 (ENSPCIG00000012543) #23	IMMP1L (ENSPCIG00000012542) #24	DNAJC24 (ENSPCIG00000012541) #25	ENSPCIG00000001554	MPPED2 (ENSPCIG00000001518) #27	ARL14EP (ENSPCIG00000001506) #28	FSHB (ENSPCIG00000001494) #29	KCNA4 (ENSPCIG00000009690)
Wallaby	MODERN SPECIES	615																PAX6 (ENSMEUG00000015900) #22
Tasmanian devil	MODERN SPECIES	5	CAPRIN1 (ENSSHAG00000002731)	LMO2 (ENSSHAG00000018647)	FBXO3 (ENSSHAG00000018609) #7	ENSSHAG00000031082	KIAA1549L (ENSSHAG00000018497) #10	HIPK3 (ENSSHAG00000018303) #12	CSTF3 (ENSSHAG00000018128) #13	TCP11L1 (ENSSHAG00000018104) #14	DEPDC7 (ENSSHAG00000026677) #15	QSER1 (ENSSHAG00000018007) #16	PRRG4 (ENSSHAG00000028281) #17	CCDC73 (ENSSHAG00000030516) #18	EIF3M (ENSSHAG00000017641) #19	WT1 (ENSSHAG00000027965) #20	RCN1 (ENSSHAG00000017010) #21	PAX6 (ENSSHAG00000016310) #22	ELP4 (ENSSHAG00000015701) #23	IMMP1L (ENSSHAG00000025017) #24	DNAJC24 (ENSSHAG00000025176) #25	ENSSHAG00000013701	MPPED2 (ENSSHAG00000011008) #27	ARL14EP (ENSSHAG00000025815) #28	FSHB (ENSSHAG00000009491) #29	KCNA4 (ENSSHAG00000031255)	ENSSHAG00000015956 #30	KIF18A (ENSSHAG00000015625) #31	BDNF (ENSSHAG00000014528) #32	LIN7C (ENSSHAG00000013710) #33	LGR4 (ENSSHAG00000013104) #34	ENSSHAG00000012905 #35	BBOX1 (ENSSHAG00000011451) #36
Opossum	MODERN SPECIES	4	ENSMODG00000009806 #9	KIAA1549L (ENSMODG00000009801) #10	HIPK3 (ENSMODG00000009781) #12	ENSMODG00000009745 #13	TCP11L1 (ENSMODG00000009728) #14	ENSMODG00000009718 #15	QSER1 (ENSMODG00000009706) #16	PRRG4 (ENSMODG00000042926) #17	CCDC73 (ENSMODG00000009690) #18	EIF3M (ENSMODG00000009678) #19	ENSMODG00000028501	WT1 (ENSMODG00000009646) #20	RCN1 (ENSMODG00000009625) #21	ENSMODG00000028948	ENSMODG00000041494	PAX6 (ENSMODG00000009611) #22	ELP4 (ENSMODG00000009596) #23	IMMP1L (ENSMODG00000009580) #24	ENSMODG00000009567 #25	ENSMODG00000009560	MPPED2 (ENSMODG00000009548) #27	ARL14EP (ENSMODG00000009529) #28	FSHB (ENSMODG00000009526) #29	ENSMODG00000049969	METTL15 (ENSMODG00000009478) #30	KIF18A (ENSMODG00000009475) #31	BDNF (ENSMODG00000009461) #32	LIN7C (ENSMODG00000009456) #33	LGR4 (ENSMODG00000009446) #34	ENSMODG00000029502 #35	BBOX1 (ENSMODG00000009421) #36
Platypus	MODERN SPECIES	14	PPFIBP2 (ENSOANG00000012061)	ENSOANG00000012060	SYT9 (ENSOANG00000015132)	SPON1 (ENSOANG00000015133)	C11orf91 (ENSOANG00000039291) #9	ENSOANG00000015134 #10	HIPK3 (ENSOANG00000015138) #12	CSTF3 (ENSOANG00000015140) #13	DEPDC7 (ENSOANG00000015142) #15	ENSOANG00000015143 #16	PRRG4 (ENSOANG00000015144) #17	ENSOANG00000015145 #18	EIF3M (ENSOANG00000015146) #19	WT1 (ENSOANG00000015147) #20	RCN1 (ENSOANG00000015148) #21	PAX6 (ENSOANG00000015149) #22	ELP4 (ENSOANG00000015151) #23	IMMP1L (ENSOANG00000021774) #24	ENSOANG00000009893 #25	DCDC1 (ENSOANG00000010703) #26	MPPED2 (ENSOANG00000028269) #27	ARL14EP (ENSOANG00000010707) #28	FSHB (ENSOANG00000038640) #29	KCNA4 (ENSOANG00000010709)	TEAD1 (ENSOANG00000021775)	PARVA (ENSOANG00000028613)	GALNT18 (ENSOANG00000050600)	USP47 (ENSOANG00000004734)	ENSOANG00000048353	MICAL2 (ENSOANG00000010397)	ENSOANG00000010395
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Episquamata	ANCESTRAL SPECIES		ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Common wall lizard	MODERN SPECIES		SPON1 (ENSPMRG00000001084)	ENSPMRG00000001052	C11orf91 (ENSPMRG00000001042) #9	KIAA1549L (ENSPMRG00000000918) #10	HIPK3 (ENSPMRG00000000806) #12	CSTF3 (ENSPMRG00000000761) #13	TCP11L1 (ENSPMRG00000000733) #14	DEPDC7 (ENSPMRG00000000712) #15	QSER1 (ENSPMRG00000000670) #16	PRRG4 (ENSPMRG00000000641) #17	ENSPMRG00000000627	CCDC73 (ENSPMRG00000000605) #18	EIF3M (ENSPMRG00000000575) #19	WT1 (ENSPMRG00000000534) #20	RCN1 (ENSPMRG00000000512) #21	PAX6 (ENSPMRG00000000481) #22	ENSPMRG00000000460	ELP4 (ENSPMRG00000000438) #23	IMMP1L (ENSPMRG00000000419) #24	DNAJC24 (ENSPMRG00000000395) #25	DCDC1 (ENSPMRG00000000206) #26	ENSPMRG00000000127	ENSPMRG00000000122	MPPED2 (ENSPMRG00000000109) #27	ARL14EP (ENSPMRG00000000093) #28	FSHB (ENSPMRG00000007482) #29	KCNA4 (ENSPMRG00000007478)	ENSPMRG00000007475	METTL15 (ENSPMRG00000007470) #30	KIF18A (ENSPMRG00000007454) #31	ENSPMRG00000007447
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000000823	SYT9 (ENSSMRG00000000834)	SPON1 (ENSSMRG00000000930)	C11orf91 (ENSSMRG00000000979) #9	KIAA1549L (ENSSMRG00000001010) #10	HIPK3 (ENSSMRG00000001108) #12	CSTF3 (ENSSMRG00000001133) #13	TCP11L1 (ENSSMRG00000001156) #14	DEPDC7 (ENSSMRG00000001221) #15	QSER1 (ENSSMRG00000001285) #16	PRRG4 (ENSSMRG00000001322) #17	ENSSMRG00000001329	EIF3M (ENSSMRG00000001337) #19	WT1 (ENSSMRG00000001443) #20	RCN1 (ENSSMRG00000001448) #21	PAX6 (ENSSMRG00000001465) #22	ELP4 (ENSSMRG00000001541) #23	IMMP1L (ENSSMRG00000001563) #24	DNAJC24 (ENSSMRG00000001608) #25	ENSSMRG00000001619	ENSSMRG00000001643	MPPED2 (ENSSMRG00000001730) #27	ARL14EP (ENSSMRG00000001742) #28	FSHB (ENSSMRG00000001765) #29	KCNA4 (ENSSMRG00000001789)	ENSSMRG00000001802	METTL15 (ENSSMRG00000001832) #30	KIF18A (ENSSMRG00000001851) #31	BDNF (ENSSMRG00000001884) #32	LIN7C (ENSSMRG00000001891) #33	LGR4 (ENSSMRG00000001949) #34
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Elapidae_a	ANCESTRAL SPECIES	4	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402.c #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Acanthophiinae	ANCESTRAL SPECIES	6	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402.c #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Eastern brown snake	MODERN SPECIES	1	OLFML1 (ENSPTXG00000002846)	SYT9 (ENSPTXG00000002849)	SPON1 (ENSPTXG00000002862)	C11orf91 (ENSPTXG00000002888) #9	KIAA1549L (ENSPTXG00000002896) #10	HIPK3 (ENSPTXG00000002902) #12	CSTF3 (ENSPTXG00000002909) #13	TCP11L1 (ENSPTXG00000003098) #14	DEPDC7 (ENSPTXG00000003100) #15	QSER1 (ENSPTXG00000003103) #16	PRRG4 (ENSPTXG00000003106) #17	ENSPTXG00000003107	EIF3M (ENSPTXG00000003110) #19	WT1 (ENSPTXG00000003113) #20	RCN1 (ENSPTXG00000003114) #21	PAX6 (ENSPTXG00000003116) #22	ELP4 (ENSPTXG00000003316) #23	IMMP1L (ENSPTXG00000003323) #24	DNAJC24 (ENSPTXG00000003324) #25	DCDC1 (ENSPTXG00000003325) #26	MPPED2 (ENSPTXG00000003328) #27	ARL14EP (ENSPTXG00000003329) #28	FSHB (ENSPTXG00000003330) #29	KCNA4 (ENSPTXG00000003332)	METTL15 (ENSPTXG00000003334) #30	KIF18A (ENSPTXG00000003336) #31	BDNF (ENSPTXG00000003342) #32	LIN7C (ENSPTXG00000003345) #33	LGR4 (ENSPTXG00000003347) #34	ENSPTXG00000003353 #35	BBOX1 (ENSPTXG00000003355) #36
Mainland tiger snake	MODERN SPECIES	9	SYT9 (ENSNSUG00000012588)	SPON1 (ENSNSUG00000012587)	C11orf91 (ENSNSUG00000012586) #9	KIAA1549L (ENSNSUG00000012584) #10	HIPK3 (ENSNSUG00000012471) #12	CSTF3 (ENSNSUG00000012169) #13	TCP11L1 (ENSNSUG00000012167) #14	DEPDC7 (ENSNSUG00000012166) #15	QSER1 (ENSNSUG00000012113) #16	PRRG4 (ENSNSUG00000012112) #17	ENSNSUG00000012111	EIF3M (ENSNSUG00000012110) #19	WT1 (ENSNSUG00000012108) #20	ENSNSUG00000012106 #21	ENSNSUG00000012105 #21	PAX6 (ENSNSUG00000011766) #22	ELP4 (ENSNSUG00000011765) #23	IMMP1L (ENSNSUG00000011764) #24	DNAJC24 (ENSNSUG00000011763) #25	ENSNSUG00000011762	ENSNSUG00000011761	MPPED2 (ENSNSUG00000011760) #27	ARL14EP (ENSNSUG00000011758) #28	FSHB (ENSNSUG00000011750) #29	KCNA4 (ENSNSUG00000011749)	METTL15 (ENSNSUG00000011746) #30	KIF18A (ENSNSUG00000011745) #31	BDNF (ENSNSUG00000011726) #32	LIN7C (ENSNSUG00000011718) #33	LGR4 (ENSNSUG00000011714) #34	ENSNSUG00000011712 #35
Blue-lipped sea krait	MODERN SPECIES	5175																PAX6 (ENSLLTG00000010774) #22
Indian cobra	MODERN SPECIES		SPON1 (ENSNNAG00000014425)	ENSNNAG00000014446	C11orf91 (ENSNNAG00000014453) #9	KIAA1549L (ENSNNAG00000014463) #10	HIPK3 (ENSNNAG00000014531) #12	CSTF3 (ENSNNAG00000014604) #13	TCP11L1 (ENSNNAG00000014828) #14	DEPDC7 (ENSNNAG00000014863) #15	QSER1 (ENSNNAG00000014885) #16	PRRG4 (ENSNNAG00000014924) #17	ENSNNAG00000014930	EIF3M (ENSNNAG00000014949) #19	WT1 (ENSNNAG00000015011) #20	RCN1 (ENSNNAG00000015034) #21	ENSNNAG00000015043	PAX6 (ENSNNAG00000015060) #22	ELP4 (ENSNNAG00000015262) #23	IMMP1L (ENSNNAG00000015285) #24	DNAJC24 (ENSNNAG00000015296) #25	ENSNNAG00000015309	MPPED2 (ENSNNAG00000015379) #27	ARL14EP (ENSNNAG00000015410) #28	FSHB (ENSNNAG00000015417) #29	KCNA4 (ENSNNAG00000015431)	ENSNNAG00000015444	METTL15 (ENSNNAG00000015455) #30	KIF18A (ENSNNAG00000015471) #31	BDNF (ENSNNAG00000015573) #32	LIN7C (ENSNNAG00000015603) #33	LGR4 (ENSNNAG00000015633) #34	CCDC34 (ENSNNAG00000015684) #35
Lizard	MODERN SPECIES		ENSACAG00000003197	ENSACAG00000043916	ENSACAG00000042634	ENSACAG00000043586	KIAA1549L (ENSACAG00000003156) #10	HIPK3 (ENSACAG00000003041) #12	CSTF3 (ENSACAG00000002823) #13	TCP11L1 (ENSACAG00000002746) #14	DEPDC7 (ENSACAG00000002702) #15	QSER1 (ENSACAG00000002670) #16	PRRG4 (ENSACAG00000029540) #17	EIF3M (ENSACAG00000002574) #19	WT1 (ENSACAG00000002480) #20	ENSACAG00000044574	RCN1 (ENSACAG00000002439) #21	PAX6 (ENSACAG00000002252) #22	ENSACAG00000043890	ELP4 (ENSACAG00000002184) #23	IMMP1L (ENSACAG00000002178) #24	DNAJC24 (ENSACAG00000002152) #25	ENSACAG00000002142	ENSACAG00000002118	ENSACAG00000044250	MPPED2 (ENSACAG00000022571) #27	ARL14EP (ENSACAG00000035377) #28	FSHB (ENSACAG00000001952) #29	ENSACAG00000041948	ENSACAG00000041117	KCNA4 (ENSACAG00000001936)	ENSACAG00000045286	GAS2 (ENSACAG00000015124)
tuatara	MODERN SPECIES	1034														WT1 (ENSSPUG00000004548) #20	RCN1 (ENSSPUG00000004587) #21	PAX6 (ENSSPUG00000004608) #22	ENSSPUG00000004916 #23	ENSSPUG00000004996 #23	IMMP1L (ENSSPUG00000005064) #24	DNAJC24 (ENSSPUG00000005075) #25	ENSSPUG00000005084	ENSSPUG00000005125	MPPED2 (ENSSPUG00000005183) #27	ARL14EP (ENSSPUG00000005204) #28	FSHB (ENSSPUG00000005220) #29
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Chinese turtle	MODERN SPECIES	1512							PRICKLE1 (ENSPSIG00000014878)	ENSPSIG00000001623	PPHLN1 (ENSPSIG00000014773)	ZCRB1 (ENSPSIG00000014606)	ENSPSIG00000014602 #18	EIF3M (ENSPSIG00000014035) #19	ENSPSIG00000014032	WT1 (ENSPSIG00000013679) #20	RCN1 (ENSPSIG00000013397) #21	PAX6 (ENSPSIG00000012748) #22	ELP4 (ENSPSIG00000012527) #23	IMMP1L (ENSPSIG00000012520) #24	DNAJC24 (ENSPSIG00000012487) #25	ENSPSIG00000012424	ENSPSIG00000001618	ENSPSIG00000012305	ENSPSIG00000012298	ENSPSIG00000012031	ENSPSIG00000011951	FER (ENSPSIG00000010925)	FBXL17 (ENSPSIG00000010798)	ENSPSIG00000010772	EFNA5 (ENSPSIG00000010663)	PRR16 (ENSPSIG00000010655)	SRFBP1 (ENSPSIG00000010650)
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000166699	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34
Emydidae	ANCESTRAL SPECIES	2	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT00730000111983	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Three-toed box turtle	MODERN SPECIES	40	SYT9 (ENSTMTG00000005920)	SPON1 (ENSTMTG00000005996)	C11orf91 (ENSTMTG00000006306) #9	KIAA1549L (ENSTMTG00000006330) #10	HIPK3 (ENSTMTG00000006480) #12	CSTF3 (ENSTMTG00000006542) #13	TCP11L1 (ENSTMTG00000006922) #14	DEPDC7 (ENSTMTG00000007040) #15	QSER1 (ENSTMTG00000007082) #16	PRRG4 (ENSTMTG00000000082) #17	ENSTMTG00000000109	EIF3M (ENSTMTG00000000134) #19	WT1 (ENSTMTG00000000206) #20	ENSTMTG00000000249	RCN1 (ENSTMTG00000000265) #21	PAX6 (ENSTMTG00000000334) #22	ELP4 (ENSTMTG00000000477) #23	IMMP1L (ENSTMTG00000000508) #24	DNAJC24 (ENSTMTG00000000537) #25	DCDC1 (ENSTMTG00000000565) #26	ENSTMTG00000000614 #27	ENSTMTG00000000622 #27	ARL14EP (ENSTMTG00000000641) #28	FSHB (ENSTMTG00000000650) #29	KCNA4 (ENSTMTG00000000657)	METTL15 (ENSTMTG00000000669) #30	KIF18A (ENSTMTG00000000705) #31	BDNF (ENSTMTG00000000769) #32	LIN7C (ENSTMTG00000000782) #33	LGR4 (ENSTMTG00000000809) #34	CCDC34 (ENSTMTG00000000834) #35
painted turtle	MODERN SPECIES	13	SHANK2 (ENSCPBG00000012482)	CTTN (ENSCPBG00000012477)	PPFIA1 (ENSCPBG00000012457)	FADD (ENSCPBG00000012452)	ANO1 (ENSCPBG00000011970)	FGF3 (ENSCPBG00000011841)	FGF4 (ENSCPBG00000011837)	FGF19 (ENSCPBG00000011830)	LTO1 (ENSCPBG00000011826)	CCND1 (ENSCPBG00000011823)	TPCN2 (ENSCPBG00000011800)	METTL15 (ENSCPBG00000011793) #30	KIF18A (ENSCPBG00000011783) #31	ENSCPBG00000011769	RCN1 (ENSCPBG00000011765) #21	PAX6 (ENSCPBG00000011750) #22	ELP4 (ENSCPBG00000011741) #23	IMMP1L (ENSCPBG00000011737) #24	DNAJC24 (ENSCPBG00000011734) #25	ENSCPBG00000011731	DCDC1 (ENSCPBG00000011700) #26	MPPED2 (ENSCPBG00000011688) #27	ARL14EP (ENSCPBG00000011685) #28	FSHB (ENSCPBG00000011683) #29	KCNA4 (ENSCPBG00000011682)	TBC1D22A (ENSCPBG00000011676)	CERK (ENSCPBG00000011667)	GRAMD4 (ENSCPBG00000011644)	CELSR1 (ENSCPBG00000011625)	TRMU (ENSCPBG00000011621)	GTSE1 (ENSCPBG00000011618)
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163628 #26	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005002836	SYT9 (ENSGEVG00005002769)	SPON1 (ENSGEVG00005002736)	C11orf91 (ENSGEVG00005002711) #9	KIAA1549L (ENSGEVG00005002647) #10	HIPK3 (ENSGEVG00005002576) #12	CSTF3 (ENSGEVG00005002193) #13	TCP11L1 (ENSGEVG00005001951) #14	DEPDC7 (ENSGEVG00005001924) #15	QSER1 (ENSGEVG00005001898) #16	PRRG4 (ENSGEVG00005001863) #17	ENSGEVG00005001841	EIF3M (ENSGEVG00005001825) #19	WT1 (ENSGEVG00005001813) #20	RCN1 (ENSGEVG00005001796) #21	PAX6 (ENSGEVG00005001714) #22	ELP4 (ENSGEVG00005001646) #23	IMMP1L (ENSGEVG00005001592) #24	DNAJC24 (ENSGEVG00005001548) #25	DCDC1 (ENSGEVG00005001496) #26	MPPED2 (ENSGEVG00005001462) #27	ARL14EP (ENSGEVG00005001455) #28	FSHB (ENSGEVG00005001441) #29	KCNA4 (ENSGEVG00005001429)	METTL15 (ENSGEVG00005001410) #30	KIF18A (ENSGEVG00005001376) #31	BDNF (ENSGEVG00005001354) #32	LIN7C (ENSGEVG00005001277) #33	LGR4 (ENSGEVG00005001210) #34	ENSGEVG00005001169 #35	BBOX1 (ENSGEVG00005001147) #36
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2105										QSER1 (ENSCABG00000012688) #16	PRRG4 (ENSCABG00000012685) #17	ENSCABG00000012681	EIF3M (ENSCABG00000012678) #19	WT1 (ENSCABG00000012669) #20	RCN1 (ENSCABG00000012666) #21	PAX6 (ENSCABG00000012614) #22	ENSCABG00000012608 #22
Abingdon island giant tortoise	MODERN SPECIES	2105									QSER1 (ENSCABG00000012688) #16	PRRG4 (ENSCABG00000012685) #17	ENSCABG00000012681	EIF3M (ENSCABG00000012678) #19	WT1 (ENSCABG00000012669) #20	RCN1 (ENSCABG00000012666) #21	PAX6 (ENSCABG00000012614) #22	ENSCABG00000012608 #22
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000016867	ENSGT00940000163542	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35
Aves	ANCESTRAL SPECIES	2	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	181										QSER1 (ENSSCUG00000002057) #16	PRRG4 (ENSSCUG00000002061) #17	ENSSCUG00000002064	EIF3M (ENSSCUG00000002068) #19	RCN1 (ENSSCUG00000002080) #21	ENSSCUG00000002082 #22	ENSSCUG00000002083 #22	ELP4 (ENSSCUG00000002088) #23	IMMP1L (ENSSCUG00000002090) #24	DNAJC24 (ENSSCUG00000002093) #25
African ostrich	MODERN SPECIES	181											QSER1 (ENSSCUG00000002057) #16	PRRG4 (ENSSCUG00000002061) #17	ENSSCUG00000002064	EIF3M (ENSSCUG00000002068) #19	RCN1 (ENSSCUG00000002080) #21	ENSSCUG00000002082 #22	ENSSCUG00000002083 #22	ELP4 (ENSSCUG00000002088) #23	IMMP1L (ENSSCUG00000002090) #24	DNAJC24 (ENSSCUG00000002093) #25
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT01070000256497	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00960000189422	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT01070000256497	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT01050000244951.a.b.a.a	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Kakapo	MODERN SPECIES	21	OLFML1 (ENSSHBG00005010210)	SYT9 (ENSSHBG00005010399)	SPON1 (ENSSHBG00005010434)	KIAA1549L (ENSSHBG00005010654) #10	C11orf91 (ENSSHBG00005011483) #9	HIPK3 (ENSSHBG00005011501) #12	CSTF3 (ENSSHBG00005011527) #13	TCP11L1 (ENSSHBG00005011554) #14	DEPDC7 (ENSSHBG00005011577) #15	QSER1 (ENSSHBG00005011608) #16	PRRG4 (ENSSHBG00005011645) #17	CCDC73 (ENSSHBG00005011670) #18	EIF3M (ENSSHBG00005011696) #19	WT1 (ENSSHBG00005011726) #20	RCN1 (ENSSHBG00005011763) #21	PAX6 (ENSSHBG00005011790) #22	ELP4 (ENSSHBG00005011823) #23	IMMP1L (ENSSHBG00005011845) #24	DNAJC24 (ENSSHBG00005011867) #25	MPPED2 (ENSSHBG00005011883) #27	ARL14EP (ENSSHBG00005011893) #28	FSHB (ENSSHBG00005011918) #29	KCNA4 (ENSSHBG00005011926)	METTL15 (ENSSHBG00005011935) #30	KIF18A (ENSSHBG00005011957) #31	BDNF (ENSSHBG00005011985) #32	LIN7C (ENSSHBG00005011996) #33	ENSSHBG00005012022	LGR4 (ENSSHBG00005012044) #34	CCDC34 (ENSSHBG00005012076) #35	BBOX1 (ENSSHBG00005012140) #36
Golden eagle	MODERN SPECIES	7	PPFIBP2 (ENSACCG00020016462)	OLFML1 (ENSACCG00020016481)	SYT9 (ENSACCG00020010047)	SPON1 (ENSACCG00020010057)	KIAA1549L (ENSACCG00020010154) #10	HIPK3 (ENSACCG00020010202) #12	CSTF3 (ENSACCG00020010215) #13	TCP11L1 (ENSACCG00020010224) #14	QSER1 (ENSACCG00020010249) #16	PRRG4 (ENSACCG00020010267) #17	CCDC73 (ENSACCG00020010284) #18	EIF3M (ENSACCG00020010307) #19	WT1 (ENSACCG00020010323) #20	ENSACCG00020010345	RCN1 (ENSACCG00020010354) #21	PAX6 (ENSACCG00020010371) #22	ELP4 (ENSACCG00020010390) #23	IMMP1L (ENSACCG00020010398) #24	DNAJC24 (ENSACCG00020010411) #25	MPPED2 (ENSACCG00020010418) #27	ARL14EP (ENSACCG00020010426) #28	FSHB (ENSACCG00020010434) #29	KCNA4 (ENSACCG00020010439)	METTL15 (ENSACCG00020010450) #30	KIF18A (ENSACCG00020010467) #31	BDNF (ENSACCG00020010477) #32	LIN7C (ENSACCG00020010487) #33	LGR4 (ENSACCG00020010498) #34	ENSACCG00020010515 #35	BBOX1 (ENSACCG00020010524) #36	FIBIN (ENSACCG00020010544)
Passeriformes	ANCESTRAL SPECIES	25	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00960000189422	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT01070000256497	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Great tit	MODERN SPECIES	25	SPON1 (ENSPMJG00000001329)	ENSPMJG00000001362	ENSPMJG00000001369	KIAA1549L (ENSPMJG00000001375) #10	HIPK3 (ENSPMJG00000001725) #12	CSTF3 (ENSPMJG00000001761) #13	TCP11L1 (ENSPMJG00000001775) #14	DEPDC7 (ENSPMJG00000001780) #15	QSER1 (ENSPMJG00000001792) #16	PRRG4 (ENSPMJG00000001905) #17	CCDC73 (ENSPMJG00000002071) #18	EIF3M (ENSPMJG00000002140) #19	WT1 (ENSPMJG00000002165) #20	RCN1 (ENSPMJG00000002184) #21	ENSPMJG00000002197	PAX6 (ENSPMJG00000002215) #22	ELP4 (ENSPMJG00000002249) #23	IMMP1L (ENSPMJG00000002362) #24	DNAJC24 (ENSPMJG00000002385) #25	MPPED2 (ENSPMJG00000002488) #27	ARL14EP (ENSPMJG00000002494) #28	FSHB (ENSPMJG00000002594) #29	KCNA4 (ENSPMJG00000002600)	METTL15 (ENSPMJG00000002757) #30	KIF18A (ENSPMJG00000002765) #31	BDNF (ENSPMJG00000002893) #32	LIN7C (ENSPMJG00000002900) #33	LGR4 (ENSPMJG00000002913) #34	CCDC34 (ENSPMJG00000002960) #35	BBOX1 (ENSPMJG00000002982) #36	SLC5A12 (ENSPMJG00000003022)
Passeriformes_d	ANCESTRAL SPECIES	24	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00960000189422	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.g #30	ENSGT00390000014756.h #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00960000189422	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.g #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00940000156257	ENSGT00940000159545
Medium ground finch	MODERN SPECIES	132																PAX6 (ENSGFOG00000011108) #22	ELP4 (ENSGFOG00000011182) #23	IMMP1L (ENSGFOG00000011186) #24	DNAJC24 (ENSGFOG00000011190) #25	ENSGFOG00000011194	ENSGFOG00000011199	MPPED2 (ENSGFOG00000011204) #27	ARL14EP (ENSGFOG00000011209) #28	FSHB (ENSGFOG00000011212) #29	KCNA4 (ENSGFOG00000011217)	METTL15 (ENSGFOG00000011221) #30	KIF18A (ENSGFOG00000011226) #31	BDNF (ENSGFOG00000011234) #32	LIN7C (ENSGFOG00000011238) #33	LGR4 (ENSGFOG00000011244) #34	CCDC34 (ENSGFOG00000011259) #35
Passeroidea	ANCESTRAL SPECIES	42	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00960000189422	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756.g #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00940000156257	ENSGT00940000159545
Common canary	MODERN SPECIES	45	PPFIBP2 (ENSSCAG00000008004)	OLFML1 (ENSSCAG00000007990)	SYT9 (ENSSCAG00000007985)	SPON1 (ENSSCAG00000007979)	KIAA1549L (ENSSCAG00000007949) #10	HIPK3 (ENSSCAG00000007942) #12	CSTF3 (ENSSCAG00000007929) #13	TCP11L1 (ENSSCAG00000007919) #14	DEPDC7 (ENSSCAG00000007915) #15	QSER1 (ENSSCAG00000007912) #16	PRRG4 (ENSSCAG00000007909) #17	CCDC73 (ENSSCAG00000007897) #18	EIF3M (ENSSCAG00000007893) #19	WT1 (ENSSCAG00000007879) #20	RCN1 (ENSSCAG00000007873) #21	PAX6 (ENSSCAG00000007861) #22	ELP4 (ENSSCAG00000007851) #23	IMMP1L (ENSSCAG00000007839) #24	DNAJC24 (ENSSCAG00000007831) #25	MPPED2 (ENSSCAG00000007825) #27	ARL14EP (ENSSCAG00000007813) #28	FSHB (ENSSCAG00000007810) #29	KCNA4 (ENSSCAG00000007805)	ENSSCAG00000007802	METTL15 (ENSSCAG00000007788) #30	KIF18A (ENSSCAG00000007780) #31	BDNF (ENSSCAG00000007771) #32	LIN7C (ENSSCAG00000007767) #33	LGR4 (ENSSCAG00000007758) #34	CCDC34 (ENSSCAG00000007753) #35	ANO3 (ENSSCAG00000007742)
Zebra finch	MODERN SPECIES	27	SYT9 (ENSTGUG00000005148)	ENSTGUG00000028253	SPON1 (ENSTGUG00000005111)	ENSTGUG00000026725	KIAA1549L (ENSTGUG00000005085) #10	HIPK3 (ENSTGUG00000005064) #12	CSTF3 (ENSTGUG00000005010) #13	TCP11L1 (ENSTGUG00000004982) #14	DEPDC7 (ENSTGUG00000004967) #15	QSER1 (ENSTGUG00000004954) #16	PRRG4 (ENSTGUG00000024032) #17	CCDC73 (ENSTGUG00000004942) #18	EIF3M (ENSTGUG00000004912) #19	WT1 (ENSTGUG00000004906) #20	RCN1 (ENSTGUG00000004868) #21	PAX6 (ENSTGUG00000004824) #22	ELP4 (ENSTGUG00000004816) #23	IMMP1L (ENSTGUG00000004811) #24	DNAJC24 (ENSTGUG00000019165) #25	MPPED2 (ENSTGUG00000004791) #27	ARL14EP (ENSTGUG00000004787) #28	FSHB (ENSTGUG00000029435) #29	ENSTGUG00000019401	METTL15 (ENSTGUG00000004772) #30	KIF18A (ENSTGUG00000004750) #31	BDNF (ENSTGUG00000004743) #32	LIN7C (ENSTGUG00000029569) #33	LGR4 (ENSTGUG00000004708) #34	CCDC34 (ENSTGUG00000004699) #35	ANO3 (ENSTGUG00000004669)	SLC5A12 (ENSTGUG00000004634)
Flycatcher	MODERN SPECIES	24	PPFIBP2 (ENSFALG00000010685)	OLFML1 (ENSFALG00000010695)	SYT9 (ENSFALG00000010701)	ENSFALG00000010710	KIAA1549L (ENSFALG00000010724) #10	HIPK3 (ENSFALG00000010731) #12	CSTF3 (ENSFALG00000010764) #13	TCP11L1 (ENSFALG00000010783) #14	DEPDC7 (ENSFALG00000010787) #15	QSER1 (ENSFALG00000010792) #16	PRRG4 (ENSFALG00000010797) #17	CCDC73 (ENSFALG00000010807) #18	EIF3M (ENSFALG00000023702) #19	WT1 (ENSFALG00000010820) #20	RCN1 (ENSFALG00000010824) #21	PAX6 (ENSFALG00000010839) #22	ELP4 (ENSFALG00000010865) #23	IMMP1L (ENSFALG00000010877) #24	DNAJC24 (ENSFALG00000023479) #25	MPPED2 (ENSFALG00000012225) #27	ARL14EP (ENSFALG00000025954) #28	FSHB (ENSFALG00000028706) #29	KCNA4 (ENSFALG00000012242)	ENSFALG00000014393 #30	ENSFALG00000012252 #30	KIF18A (ENSFALG00000012258) #31	BDNF (ENSFALG00000024798) #32	LIN7C (ENSFALG00000012273) #33	LGR4 (ENSFALG00000012293) #34	CCDC34 (ENSFALG00000028919) #35	BBOX1 (ENSFALG00000012335) #36
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT01070000256497	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Anatidae	ANCESTRAL SPECIES	33	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Pink-footed goose	MODERN SPECIES	33	SYT9 (ENSABRG00000017501)	SPON1 (ENSABRG00000017512)	ENSABRG00000017553 #9	KIAA1549L (ENSABRG00000017560) #10	HIPK3 (ENSABRG00000017587) #12	CSTF3 (ENSABRG00000017719) #13	TCP11L1 (ENSABRG00000017828) #14	DEPDC7 (ENSABRG00000017835) #15	QSER1 (ENSABRG00000017838) #16	PRRG4 (ENSABRG00000017851) #17	ENSABRG00000017856	EIF3M (ENSABRG00000017863) #19	WT1 (ENSABRG00000017888) #20	RCN1 (ENSABRG00000017896) #21	ELP4 (ENSABRG00000017920) #23	PAX6 (ENSABRG00000017954) #22	IMMP1L (ENSABRG00000017965) #24	DNAJC24 (ENSABRG00000017973) #25	MPPED2 (ENSABRG00000018012) #27	ENSABRG00000018015	ARL14EP (ENSABRG00000018023) #28	FSHB (ENSABRG00000018027) #29	KCNA4 (ENSABRG00000018030)	METTL15 (ENSABRG00000018042) #30	KIF18A (ENSABRG00000018045) #31	BDNF (ENSABRG00000018058) #32	LIN7C (ENSABRG00000018068) #33	LGR4 (ENSABRG00000018071) #34	ENSABRG00000018076 #35	BBOX1 (ENSABRG00000018084) #36	FIBIN (ENSABRG00000018087)
Duck	MODERN SPECIES	2807																PAX6 (ENSAPLG00000004928) #22
Phasianidae	ANCESTRAL SPECIES	26	ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00940000164881	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT01070000256497	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Japanese quail	MODERN SPECIES	23	METTL15 (ENSCJPG00005015315) #30	BBOX1 (ENSCJPG00005015317) #36	SPON1 (ENSCJPG00005015318)	ENSCJPG00005015319	KIAA1549L (ENSCJPG00005015320) #10	HIPK3 (ENSCJPG00005015327) #12	CSTF3 (ENSCJPG00005015332) #13	TCP11L1 (ENSCJPG00005015335) #14	DEPDC7 (ENSCJPG00005015337) #15	QSER1 (ENSCJPG00005015356) #16	PRRG4 (ENSCJPG00005015358) #17	ENSCJPG00005015359	EIF3M (ENSCJPG00005015362) #19	WT1 (ENSCJPG00005015366) #20	RCN1 (ENSCJPG00005015369) #21	PAX6 (ENSCJPG00005015377) #22	ELP4 (ENSCJPG00005015383) #23	IMMP1L (ENSCJPG00005015384) #24	DNAJC24 (ENSCJPG00005015385) #25	ENSCJPG00005015386	MPPED2 (ENSCJPG00005015393) #27	ARL14EP (ENSCJPG00005015394) #28	FSHB (ENSCJPG00005015395) #29	KCNA4 (ENSCJPG00005015399)	COMMD9 (ENSCJPG00005015405)	LDLRAD3 (ENSCJPG00005015406)	FJX1 (ENSCJPG00005015411)	PAMR1 (ENSCJPG00005015412)	SLC1A2 (ENSCJPG00005015413)	CD44 (ENSCJPG00005015414)	PDHX (ENSCJPG00005015416)
Phasianidae_b	ANCESTRAL SPECIES	39		ENSGT00940000154910.b.b	ENSGT00390000002169 #9	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT01070000256497	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Chicken	MODERN SPECIES	34	CSTF3 (ENSGALG00010022545) #13	HIPK3 (ENSGALG00010019335) #12	KIAA1549L (ENSGALG00010022569) #10	C11orf91 (ENSGALG00010022351) #9	SPON1 (ENSGALG00010022875)	ENSGALG00010022491	ENSGALG00010022254	ENSGALG00010023037	QSER1 (ENSGALG00010022472) #16	PRRG4 (ENSGALG00010023751) #17	ENSGALG00010023738	EIF3M (ENSGALG00010023714) #19	WT1 (ENSGALG00010023689) #20	RCN1 (ENSGALG00010023668) #21	ENSGALG00010023658	PAX6 (ENSGALG00010023642) #22	ELP4 (ENSGALG00010019458) #23	IMMP1L (ENSGALG00010019422) #24	DNAJC24 (ENSGALG00010019344) #25	MPPED2 (ENSGALG00010022622) #27	ARL14EP (ENSGALG00010022978) #28	FSHB (ENSGALG00010022961) #29	KCNA4 (ENSGALG00010022945)	ENSGALG00010022391	METTL15P1 (ENSGALG00010022379) #30	KIF18A (ENSGALG00010022363) #31	BDNF (ENSGALG00010020046) #32	LIN7C (ENSGALG00010019919) #33	LGR4 (ENSGALG00010019873) #34	BBOX1 (ENSGALG00010019820) #36	FIBIN (ENSGALG00010019801)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	25			ENSMGAG00000021452	ENSMGAG00000001171	KIAA1549L (ENSMGAG00000001190) #10	HIPK3 (ENSMGAG00000001207) #12	CSTF3 (ENSMGAG00000001383) #13	TCP11L1 (ENSMGAG00000001302) #14	DEPDC7 (ENSMGAG00000001332) #15	QSER1 (ENSMGAG00000001361) #16	PRRG4 (ENSMGAG00000001417) #17	CCDC73 (ENSMGAG00000001437) #18	EIF3M (ENSMGAG00000001453) #19	WT1 (ENSMGAG00000001489) #20	RCN1 (ENSMGAG00000001504) #21	ENSMGAG00000020587 #22	ENSMGAG00000001533 #22	ELP4 (ENSMGAG00000001583) #23	IMMP1L (ENSMGAG00000001595) #24	DNAJC24 (ENSMGAG00000001602) #25	MPPED2 (ENSMGAG00000001615) #27	ARL14EP (ENSMGAG00000001621) #28	FSHB (ENSMGAG00000001649) #29	KCNA4 (ENSMGAG00000001634)	METTL15 (ENSMGAG00000001653) #30	KIF18A (ENSMGAG00000001660) #31	BDNF (ENSMGAG00000015359) #32	LIN7C (ENSMGAG00000012808) #33	CCDC34 (ENSMGAG00000001764) #35	BBOX1 (ENSMGAG00000001772) #36	FIBIN (ENSMGAG00000018379)
Turkey	MODERN SPECIES	25		ENSMGAG00000021452	ENSMGAG00000001171	KIAA1549L (ENSMGAG00000001190) #10	HIPK3 (ENSMGAG00000001207) #12	CSTF3 (ENSMGAG00000001383) #13	TCP11L1 (ENSMGAG00000001302) #14	DEPDC7 (ENSMGAG00000001332) #15	QSER1 (ENSMGAG00000001361) #16	PRRG4 (ENSMGAG00000001417) #17	CCDC73 (ENSMGAG00000001437) #18	EIF3M (ENSMGAG00000001453) #19	WT1 (ENSMGAG00000001489) #20	RCN1 (ENSMGAG00000001504) #21	ENSMGAG00000020587 #22	ENSMGAG00000001533 #22	ELP4 (ENSMGAG00000001583) #23	IMMP1L (ENSMGAG00000001595) #24	DNAJC24 (ENSMGAG00000001602) #25	MPPED2 (ENSMGAG00000001615) #27	ARL14EP (ENSMGAG00000001621) #28	FSHB (ENSMGAG00000001649) #29	KCNA4 (ENSMGAG00000001634)	METTL15 (ENSMGAG00000001653) #30	KIF18A (ENSMGAG00000001660) #31	BDNF (ENSMGAG00000015359) #32	LIN7C (ENSMGAG00000012808) #33	CCDC34 (ENSMGAG00000001764) #35	BBOX1 (ENSMGAG00000001772) #36	FIBIN (ENSMGAG00000018379)	SLC5A12 (ENSMGAG00000001798)
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	31	ADAL (ENSCPRG00005009337)	TM2D3 (ENSCPRG00005009334)	TARS3 (ENSCPRG00005009190)	TJP1 (ENSCPRG00005009117)	ENTREP2 (ENSCPRG00005009096)	ENSCPRG00005009073	ENSCPRG00005009066	ENSCPRG00005008952	ENSCPRG00005008835	ENSCPRG00005008820	ENSCPRG00005008808	ENSCPRG00005008760	ENSCPRG00005008746	ENSCPRG00005008739	ENSCPRG00005008730	ENSCPRG00005008724 #22	ENSCPRG00005008713	ENSCPRG00005008700	ENSCPRG00005008687	ENSCPRG00005008682	ENSCPRG00005008629	ENSCPRG00005008618	ENSCPRG00005008617	ENSCPRG00005008600	ENSCPRG00005008586	ENSCPRG00005008583	ENSCPRG00005008572	ENSCPRG00005008566	ENSCPRG00005008563	ENSCPRG00005008550	ENSCPRG00005008528
Australian saltwater crocodile	MODERN SPECIES	64	SYT9 (ENSCPRG00005006495)	SPON1 (ENSCPRG00005006526)	KIAA1549L (ENSCPRG00005006560) #10	HIPK3 (ENSCPRG00005006578) #12	CSTF3 (ENSCPRG00005006608) #13	ENSCPRG00005006616	TCP11L1 (ENSCPRG00005006620) #14	DEPDC7 (ENSCPRG00005006628) #15	QSER1 (ENSCPRG00005006635) #16	PRRG4 (ENSCPRG00005006678) #17	ENSCPRG00005006698	EIF3M (ENSCPRG00005006702) #19	WT1 (ENSCPRG00005006725) #20	CAMK2N2 (ENSCPRG00005006737)	RCN1 (ENSCPRG00005006760) #21	PAX6 (ENSCPRG00005006810) #22	ELP4 (ENSCPRG00005007256) #23	ENSCPRG00005007270	IMMP1L (ENSCPRG00005007272) #24	DNAJC24 (ENSCPRG00005007276) #25	ENSCPRG00005007281	ENSCPRG00005007289	MPPED2 (ENSCPRG00005007313) #27	ARL14EP (ENSCPRG00005007328) #28	FSHB (ENSCPRG00005007332) #29	KCNA4 (ENSCPRG00005007339)	METTL15 (ENSCPRG00005007354) #30	KIF18A (ENSCPRG00005007382) #31	BDNF (ENSCPRG00005007419) #32	LIN7C (ENSCPRG00005007421) #33	LGR4 (ENSCPRG00005007448) #34
Anura	ANCESTRAL SPECIES	98												ENSGT00390000013482 #18	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.a #27	ENSGT00940000156586 #28	ENSGT00940000160051 #29	ENSGT00940000162248	ENSGT00390000014756 #30	ENSGT00940000159058 #31	ENSGT00390000007725.B.d #32	ENSGT00940000153222.a.b.b.a #33	ENSGT00940000157925 #34	ENSGT00730000111271 #35	ENSGT00530000063582.b #36	ENSGT00390000007623
Leishan spiny toad	MODERN SPECIES	1	TCP11L1 (ENSLLEG00000027023) #14	ENSLLEG00000027004	DEPDC7 (ENSLLEG00000026960) #15	QSER1 (ENSLLEG00000026759) #16	PRRG4 (ENSLLEG00000026675) #17	ENSLLEG00000026653	ENSLLEG00000026408	ENSLLEG00000026128 #18	EIF3M (ENSLLEG00000025808) #19	ENSLLEG00000025767	WT1 (ENSLLEG00000025648) #20	ENSLLEG00000025636	ENSLLEG00000025629	ENSLLEG00000025614	RCN1 (ENSLLEG00000025475) #21	PAX6 (ENSLLEG00000025047) #22	ELP4 (ENSLLEG00000024953) #23	IMMP1L (ENSLLEG00000024872) #24	DNAJC24 (ENSLLEG00000024820) #25	ENSLLEG00000024798	ENSLLEG00000024526	DCDC1 (ENSLLEG00000022495) #26	ENSLLEG00000022407	ENSLLEG00000022277	MPPED2 (ENSLLEG00000022136) #27	ARL14EP (ENSLLEG00000022089) #28	FSHB (ENSLLEG00000022038) #29	KCNA4 (ENSLLEG00000022007)	ENSLLEG00000021983	METTL15 (ENSLLEG00000021914) #30	KIF18A (ENSLLEG00000021206) #31
Frog	MODERN SPECIES	4	ENSXETG00000041673 #13	ENSXETG00000042637 ##13	ENSXETG00000043258 #13	hipk3 (ENSXETG00000017947) #12	ENSXETG00000045992	tcp11l1 (ENSXETG00000017957) #14	depdc7 (ENSXETG00000017967) #15	qser1 (ENSXETG00000026639) #16	prrg4 (ENSXETG00000043581) #17	ENSXETG00000046163	slc13a4l (ENSXETG00000008163)	eif3m (ENSXETG00000008167) #19	ENSXETG00000044044	wt1 (ENSXETG00000040519) #20	rcn1 (ENSXETG00000008174) #21	pax6 (ENSXETG00000008175) #22	dnajc24 (ENSXETG00000008176) #23	immp1l (ENSXETG00000008178) #24	mpped2 (ENSXETG00000021376) #27	arl14ep (ENSXETG00000025348) #28	ENSXETG00000042398	fshb (ENSXETG00000047533) #29	kcna4 (ENSXETG00000036788)	ENSXETG00000045467	ENSXETG00000046796	mettl15 (ENSXETG00000004281) #30	ENSXETG00000047891	kif18a (ENSXETG00000004282) #31	bdnf (ENSXETG00000049139) #32	lin7c (ENSXETG00000000264) #33	lgr4 (ENSXETG00000030403) #34
Coelacanth	MODERN SPECIES	313				C11orf91 (ENSLACG00000022648) #9	KIAA1549L (ENSLACG00000017680) #10	ENSLACG00000017645	HIPK3 (ENSLACG00000017446) #12	CSTF3 (ENSLACG00000017296) #13	DEPDC7 (ENSLACG00000017210) #15	QSER1 (ENSLACG00000017112) #16	PRRG4 (ENSLACG00000016967) #17	ENSLACG00000016810	EIF3M (ENSLACG00000016705) #19	WT1 (ENSLACG00000016378) #20	RCN1 (ENSLACG00000015894) #21	PAX6 (ENSLACG00000015337) #22	ELP4 (ENSLACG00000014448) #23	IMMP1L (ENSLACG00000014092) #24	DNAJC24 (ENSLACG00000013886) #25	ENSLACG00000013512	ENSLACG00000012395 #26	ENSLACG00000011490	MPPED2 (ENSLACG00000009621) #27	ARL14EP (ENSLACG00000009077) #28
Actinopterygii	ANCESTRAL SPECIES	12	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT01060000248747	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000156019	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00940000153201	ENSGT00940000153903.a.a	ENSGT00940000164122	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663	ENSGT00950000183093.B	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963
Reedfish	MODERN SPECIES	10	OLFML1 (ENSECRG00000004652)	syt9b (ENSECRG00000004641)	ENSECRG00000004632	spon1a (ENSECRG00000004609)	ENSECRG00000004594 #10	hipk3b (ENSECRG00000004575) #12	cstf3 (ENSECRG00000004530) #13	tcp11l1 (ENSECRG00000004499) #14	depdc7a (ENSECRG00000004474) #15	QSER1 (ENSECRG00000004434) #16	ENSECRG00000004412 #17	ENSECRG00000004398	eif3m (ENSECRG00000004359) #19	wt1a (ENSECRG00000004326) #20	RCN1 (ENSECRG00000004293) #21	pax6a (ENSECRG00000004255) #22	elp4 (ENSECRG00000004221) #23	immp1l (ENSECRG00000004204) #24	DNAJC24 (ENSECRG00000004182) #25	DCDC1 (ENSECRG00000004133) #26	MPPED2 (ENSECRG00000004102) #27	ENSECRG00000003828	zdhhc13 (ENSECRG00000003789)	csrp3 (ENSECRG00000003783)	e2f8 (ENSECRG00000003773)	NAV2 (ENSECRG00000002365)	dbx1a (ENSECRG00000001922)	htatip2 (ENSECRG00000001904)	prmt3 (ENSECRG00000001827)	slc6a5 (ENSECRG00000001477)	ckap5 (ENSECRG00000001122)
Neopterygii	ANCESTRAL SPECIES	4	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT01060000248747	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000165785	ENSGT00940000156019	ENSGT00940000155391.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00940000164122	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663	ENSGT00950000183093.B	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00390000014757	ENSGT00940000158287
Spotted gar	MODERN SPECIES	666	OLFML1 (ENSLOCG00000004309)	syt9b (ENSLOCG00000004325)	spon1a (ENSLOCG00000004343)	KIAA1549L (ENSLOCG00000004360) #10	hipk3b (ENSLOCG00000004380) #12	cstf3 (ENSLOCG00000004415) #13	tcp11l1 (ENSLOCG00000004434) #14	depdc7a (ENSLOCG00000004444) #15	ENSLOCG00000004459	QSER1 (ENSLOCG00000004471) #16	prrg4 (ENSLOCG00000004488) #17	ENSLOCG00000004505	eif3m (ENSLOCG00000004520) #19	wt1a (ENSLOCG00000004537) #20	RCN1 (ENSLOCG00000004562) #21	pax6a (ENSLOCG00000004578) #22	elp4 (ENSLOCG00000004617) #23	immp1l (ENSLOCG00000004632) #24	dnajc24 (ENSLOCG00000004654) #25	ENSLOCG00000004669	ENSLOCG00000004683	ENSLOCG00000004698 ##27	ENSLOCG00000004766	zdhhc13 (ENSLOCG00000004798)	csrp3 (ENSLOCG00000004817)	e2f8 (ENSLOCG00000004831)	NAV2 (ENSLOCG00000004849)	dbx1a (ENSLOCG00000004886)	htatip2 (ENSLOCG00000004900)	prmt3 (ENSLOCG00000004922)	slc6a5 (ENSLOCG00000004950)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155391.a.a #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155391.a.a #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155391.a.a #22
Acanthomorphata	ANCESTRAL SPECIES	550																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25
Euacanthomorphacea	ANCESTRAL SPECIES	145										ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00940000159189	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.p
Percomorphaceae	ANCESTRAL SPECIES	98							ENSGT00390000009663	ENSGT00940000163363	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00950000182983.B.b	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT00940000165568	ENSGT00950000183008.a.b	ENSGT00940000166017
Percomorphaceae_B	ANCESTRAL SPECIES	5															ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Ovalentaria	ANCESTRAL SPECIES	34															ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Ovalentaria_B	ANCESTRAL SPECIES	53															ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
Pomacentridae	ANCESTRAL SPECIES	68	ENSGT00390000010961.d	ENSGT00940000156519.p	ENSGT00940000157021	ENSGT00420000029847	ENSGT00390000009456	ENSGT01100000265728	ENSGT00940000156469.a	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000158339	ENSGT00940000164138	ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B
Pomacentridae_A	ANCESTRAL SPECIES	127											ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000159572.a.b	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000154856.A.a.c.a.b.a.a.a	ENSGT00940000154189.B	ENSGT00940000158686	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b.c	ENSGT00390000017767.a.b
Amphiprion	ANCESTRAL SPECIES	155											ENSGT00390000017697.a	ENSGT00390000016791	ENSGT00940000154617.B.d	ENSGT00940000159572.a.b	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000154856.A.a.c.a.b.a.a.a	ENSGT00940000154189.B	ENSGT00940000158686	ENSGT00940000160208	ENSGT00940000159701	ENSGT00940000160974.b.c	ENSGT00390000017767.a.b
Clown anemonefish	MODERN SPECIES	404															ENSAOCG00000015022	ENSAOCG00000015069 #22	ENSAOCG00000015090 #25	ENSAOCG00000015114	ENSAOCG00000015127
Orange clownfish	MODERN SPECIES	18	ENSAPEG00000018532	KLHL25 (ENSAPEG00000018584)	ENSAPEG00000018615	znf277 (ENSAPEG00000018688)	immp2l (ENSAPEG00000018890)	LRRN3 (ENSAPEG00000018924)	ENSAPEG00000018957	ENSAPEG00000019054	ENSAPEG00000019070	ENSAPEG00000019103	ENSAPEG00000019148	ciao2a (ENSAPEG00000019160)	spg11 (ENSAPEG00000019225)	ENSAPEG00000019257	CHST1 (ENSAPEG00000019304)	ENSAPEG00000019338 #22	ENSAPEG00000019374 #25	ripor1 (ENSAPEG00000019408)	ctcf (ENSAPEG00000019469)	carmil2 (ENSAPEG00000019493)	ric8a (ENSAPEG00000019582)	ppp6r3 (ENSAPEG00000019617)	tmem170a (ENSAPEG00000019765)	ENSAPEG00000019779	ENSAPEG00000019806	gtse1 (ENSAPEG00000020013)	ENSAPEG00000020032	BET1L (ENSAPEG00000020078)	deaf1 (ENSAPEG00000020093)	drd4a (ENSAPEG00000020130)	ENSAPEG00000020141
Spiny chromis	MODERN SPECIES	2061													ENSAPOG00000005300	ENSAPOG00000005244	CHST1 (ENSAPOG00000005220)	ENSAPOG00000005176 #22
Bicolor damselfish	MODERN SPECIES	476			ENSSPAG00000003671	ENSSPAG00000003693	faap24 (ENSSPAG00000003760)	SLC7A10 (ENSSPAG00000003776)	DUS2 (ENSSPAG00000003814)	ENSSPAG00000003883	pdcd2l (ENSSPAG00000003903)	ENSSPAG00000003921	ciao2a (ENSSPAG00000003933)	spg11 (ENSSPAG00000003974)	ENSSPAG00000004104	ENSSPAG00000004133	CHST1 (ENSSPAG00000004167)	ENSSPAG00000004222 #22	ENSSPAG00000004245 #25
Cichlidae	ANCESTRAL SPECIES	72						ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000163363	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00970000193473	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000165190.B	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT01020000230364.a.b	ENSGT00730000110895.b.a.o.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000165190.B	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000165785	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c
Lyretail cichlid	MODERN SPECIES	293	pard6a (ENSNBRG00000012021)	ENSNBRG00000012005	NTRK3 (ENSNBRG00000011960)	ENSNBRG00000011919	ska1 (ENSNBRG00000011900)	ENSNBRG00000011883	KLHL25 (ENSNBRG00000011855)	ENSNBRG00000011823	ENSNBRG00000011808	ANO1 (ENSNBRG00000011766)	ENSNBRG00000011575	bcar1 (ENSNBRG00000011533)	ENSNBRG00000011507	CHST1 (ENSNBRG00000011484)	ENSNBRG00000011464	ENSNBRG00000011435 #22	ENSNBRG00000011424 #25	ripor1 (ENSNBRG00000011411)	ctcf (ENSNBRG00000011394)	carmil2 (ENSNBRG00000011303)	ric8a (ENSNBRG00000011102)	ppp6r3 (ENSNBRG00000010904)	tmem170a (ENSNBRG00000010868)	ENSNBRG00000010863	ENSNBRG00000010858	lrp5 (ENSNBRG00000010783)	CCND1 (ENSNBRG00000010664)	PRR5L (ENSNBRG00000010633)	commd9 (ENSNBRG00000010620)	zgc:114188 (ENSNBRG00000010579)	cart3 (ENSNBRG00000010561)
Haplochromini	ANCESTRAL SPECIES		ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a.o.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000165190.B	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c
Burton s mouthbrooder	MODERN SPECIES	427	HYAL4 (ENSHBUG00000004605)	hyal6 (ENSHBUG00000004623)	wasla (ENSHBUG00000000113)	pard6a (ENSHBUG00000004677)	NTRK3 (ENSHBUG00000004723)	ska1 (ENSHBUG00000004756)	ENSHBUG00000004776	KLHL25 (ENSHBUG00000004809)	ENSHBUG00000004900	ENSHBUG00000004932	ANO1 (ENSHBUG00000004961)	zgc:158868 (ENSHBUG00000004976)	bcar1 (ENSHBUG00000005041)	ENSHBUG00000005057	CHST1 (ENSHBUG00000005078)	ENSHBUG00000005120 #22	ENSHBUG00000005133 #25	ripor1 (ENSHBUG00000005258)	ctcf (ENSHBUG00000005300)	carmil2 (ENSHBUG00000005370)	ric8a (ENSHBUG00000005440)	ppp6r3 (ENSHBUG00000005469)	tmem170a (ENSHBUG00000005485)	ENSHBUG00000005495	ENSHBUG00000005506	lrp5 (ENSHBUG00000005660)	CCND1 (ENSHBUG00000005679)	PRR5L (ENSHBUG00000005691)	commd9 (ENSHBUG00000005699)	cart3 (ENSHBUG00000005716)	zgc:114188 (ENSHBUG00000005728)
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a.o.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000165190.B	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c
P. nyererei	MODERN SPECIES	503						ENSPNYG00000019027	KLHL25 (ENSPNYG00000018997)	ENSPNYG00000018923	ENSPNYG00000018880	ENSPNYG00000018862	zgc:158868 (ENSPNYG00000018849)	bcar1 (ENSPNYG00000018808)	ENSPNYG00000018778	CHST1 (ENSPNYG00000018759)	ENSPNYG00000018748	ENSPNYG00000018726 #22	ENSPNYG00000018716 #25	ripor1 (ENSPNYG00000018637)	ctcf (ENSPNYG00000018607)	carmil2 (ENSPNYG00000018519)	ric8a (ENSPNYG00000018320)	ppp6r3 (ENSPNYG00000018285)	tmem170a (ENSPNYG00000018267)	ENSPNYG00000018256	ENSPNYG00000018236	lrp5 (ENSPNYG00000018131)	CCND1 (ENSPNYG00000017992)	PRR5L (ENSPNYG00000017964)	COMMD9 (ENSPNYG00000017898)	zgc:114188 (ENSPNYG00000017858)	cart3 (ENSPNYG00000017849)
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a.o.a	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000165190.B	ENSGT00940000157182.g.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00940000161262.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00530000063981.b	ENSGT00390000006218	ENSGT00390000006548.a.b.b	ENSGT00390000018319.a.a.a.b.c
Eastern happy	MODERN SPECIES	19	wasla (ENSACLG00000014652)	ENSACLG00000014747	pard6a (ENSACLG00000014754)	NTRK3 (ENSACLG00000014805)	ENSACLG00000014900	ska1 (ENSACLG00000014957)	ENSACLG00000014996	KLHL25 (ENSACLG00000015031)	ENSACLG00000015087	ANO1 (ENSACLG00000015169)	ENSACLG00000015207	bcar1 (ENSACLG00000015225)	ENSACLG00000015284	CHST1 (ENSACLG00000015312)	ENSACLG00000015360	ENSACLG00000015426 #22	ENSACLG00000015477 #25	ripor1 (ENSACLG00000015504)	ctcf (ENSACLG00000015731)	carmil2 (ENSACLG00000015775)	ric8a (ENSACLG00000015894)	ppp6r3 (ENSACLG00000015972)	tmem170a (ENSACLG00000016088)	ENSACLG00000016109	ENSACLG00000016116	ENSACLG00000016130	ENSACLG00000016146	lrp5 (ENSACLG00000016173)	CCND1 (ENSACLG00000016341)	PRR5L (ENSACLG00000016367)	commd9 (ENSACLG00000016394)
Zebra mbuna	MODERN SPECIES	1110	wasla (ENSMZEG00005022653)	ENSMZEG00005022660	pard6a (ENSMZEG00005022661)	NTRK3 (ENSMZEG00005022664)	ENSMZEG00005022669	ska1 (ENSMZEG00005022685)	ENSMZEG00005022692	KLHL25 (ENSMZEG00005022697)	ENSMZEG00005022707	ANO1 (ENSMZEG00005022711)	zgc:158868 (ENSMZEG00005022712)	bcar1 (ENSMZEG00005022717)	ENSMZEG00005022720	CHST1 (ENSMZEG00005022721)	ENSMZEG00005022725	ENSMZEG00005022727 #22	ENSMZEG00005022731 #25	ripor1 (ENSMZEG00005022734)	ctcf (ENSMZEG00005022737)	carmil2 (ENSMZEG00005022744)	ric8a (ENSMZEG00005022749)	ppp6r3 (ENSMZEG00005022754)	tmem170a (ENSMZEG00005022757)	ENSMZEG00005022760	ENSMZEG00005022761	ENSMZEG00005022762	lrp5 (ENSMZEG00005022764)	CCND1 (ENSMZEG00005022773)	commd9 (ENSMZEG00005022782)	zgc:114188 (ENSMZEG00005022785)	cart3 (ENSMZEG00005022793)
Nile tilapia	MODERN SPECIES	19	pard6a (ENSONIG00000004016)	NTRK3 (ENSONIG00000004021)	ENSONIG00000004029	ENSONIG00000029453	ska1 (ENSONIG00000004038)	ENSONIG00000042658	ENSONIG00000037952	KLHL25 (ENSONIG00000004042)	ENSONIG00000004045	ANO1 (ENSONIG00000004053)	zgc:158868 (ENSONIG00000004065)	bcar1 (ENSONIG00000004066)	ENSONIG00000004069	ENSONIG00000030672	CHST1 (ENSONIG00000039191)	ENSONIG00000004074 #22	ENSONIG00000031548 #25	ripor1 (ENSONIG00000004084)	ctcf (ENSONIG00000004097)	carmil2 (ENSONIG00000030089)	ric8a (ENSONIG00000004103)	ppp6r3 (ENSONIG00000004106)	tmem170a (ENSONIG00000039755)	ENSONIG00000039463	ENSONIG00000028547	lrp5 (ENSONIG00000004121)	CCND1 (ENSONIG00000004126)	PRR5L (ENSONIG00000004131)	commd9 (ENSONIG00000004136)	cart3 (ENSONIG00000035649)	zgc:193812 (ENSONIG00000004140)
Midas cichlid	MODERN SPECIES	1256								ENSACIG00000019155	ENSACIG00000019149	ENSACIG00000018663	KLHL25 (ENSACIG00000018615)	ANO1 (ENSACIG00000018582)	bcar1 (ENSACIG00000018562)	cfdp1 (ENSACIG00000018553)	CHST1 (ENSACIG00000018539)	ENSACIG00000017830 #22	ENSACIG00000017766 #25	ripor1 (ENSACIG00000017608)	ctcf (ENSACIG00000017577)	carmil2 (ENSACIG00000017518)	ENSACIG00000017507	ric8a (ENSACIG00000017482)	ppp6r3 (ENSACIG00000017446)	si:ch73-130a3.4 (ENSACIG00000017428)	tmem170a (ENSACIG00000017419)	ENSACIG00000017412	lrp5 (ENSACIG00000017339)	CCND1 (ENSACIG00000017197)	PRR5L (ENSACIG00000017175)	commd9 (ENSACIG00000017148)	zgc:114188 (ENSACIG00000017108)
Atherinomorphae	ANCESTRAL SPECIES	32															ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263924	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
Cyprinodontiformes	ANCESTRAL SPECIES	34															ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263924	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
Aplocheiloidei	ANCESTRAL SPECIES	167																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a.f	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263924	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663	ENSGT00950000183211.a.a.b
Mangrove rivulus	MODERN SPECIES	592																ENSKMAG00000005795 #22	ENSKMAG00000005775	ENSKMAG00000005761 #25
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015016148	ENSNFUG00015016146	CADPS2 (ENSNFUG00015013246)	slc13a1 (ENSNFUG00015012971)	IQUB (ENSNFUG00015012926)	ASB15 (ENSNFUG00015012906)	ENSNFUG00015012893	tnni2a.1 (ENSNFUG00015012880)	TNNI2 (ENSNFUG00015012847)	BX004812.1 (ENSNFUG00015012831)	ENSNFUG00015012822	TNNT3A (ENSNFUG00015012775)	ENSNFUG00015012762	ANO1 (ENSNFUG00015011844)	ENSNFUG00015011772	ENSNFUG00015011757 #22	ENSNFUG00015011747 #25	ENSNFUG00015011739	ripor1 (ENSNFUG00015011725)	ctcf (ENSNFUG00015011705)	ENSNFUG00015011697	carmil2 (ENSNFUG00015011647)	RIC8A (ENSNFUG00015011583)	ppp6r3 (ENSNFUG00015011328)	ftsj1 (ENSNFUG00015011183)	XKR7 (ENSNFUG00015011160)	CABLES2A (ENSNFUG00015011135)	ADRM1 (ENSNFUG00015011063)	OSBPL2 (ENSNFUG00015010702)	ENSNFUG00015010666	EPHA3 (ENSNFUG00015010521)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01020000230364.a.a.b.a.z	ENSGT01020000230364.a.a.b.a.y.b	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a.o.a	ENSGT00390000014326	ENSGT01030000234550.a.a.d.a.a	ENSGT00590000083094.a.b.p	ENSGT00590000083094.a.b.o.a	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Poeciliinae	ANCESTRAL SPECIES	43					ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01010000222336.b.a.b.b	ENSGT00730000111146	ENSGT00940000157236.j	ENSGT00940000160682.b.c.a	ENSGT00590000083094.a.b.o.a	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c.d	ENSGT00940000155112.A.c.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
Poecilia	ANCESTRAL SPECIES	65	ENSGT00730000110895.b.a.o.a	ENSGT01020000230364.a.b	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.a.b.a.y.b	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01010000222336.b.a.b.b	ENSGT00730000111146	ENSGT00940000157236.j	ENSGT00940000160682.b.c.a	ENSGT00590000083094.a.b.o.a	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c.d	ENSGT00940000155112.A.c.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263924	ENSGT00940000170837	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000155391.a.a #22
Sailfin molly	MODERN SPECIES	2528																ENSPLAG00000014853 #22
Amazon molly	MODERN SPECIES	1319																ENSPFOG00000006769 #22
Guppy	MODERN SPECIES	458	NET1 (ENSPREG00000007925)	ENSPREG00000007903	ENSPREG00000007856	ENSPREG00000007836	taf3 (ENSPREG00000007825)	CELF2 (ENSPREG00000007795)	camk1db (ENSPREG00000007769)	ENSPREG00000007736	ENSPREG00000007730	ENSPREG00000007714	CADPS2 (ENSPREG00000007623)	fezf1 (ENSPREG00000007572)	aass (ENSPREG00000007411)	PTPRZ1 (ENSPREG00000007262)	ANO1 (ENSPREG00000007191)	ENSPREG00000007154 #22	ENSPREG00000007142 #25	ripor1 (ENSPREG00000007095)	ctcf (ENSPREG00000007042)	ENSPREG00000007003	ric8a (ENSPREG00000006957)	ppp6r3 (ENSPREG00000006795)	tmem170a (ENSPREG00000006737)	ENSPREG00000006721	ENSPREG00000006700	lrp5 (ENSPREG00000006550)	bcar1 (ENSPREG00000006436)	cfdp1 (ENSPREG00000006417)	gal (ENSPREG00000006400)	pard6a (ENSPREG00000006370)	NTRK3 (ENSPREG00000006328)
Platyfish	MODERN SPECIES	11															ANO1 (ENSXMAG00000016443)	ENSXMAG00000016421 #22	ENSXMAG00000025586 #25	ripor1 (ENSXMAG00000016390)	ctcf (ENSXMAG00000016342)	carmil2 (ENSXMAG00000016328)	ric8a (ENSXMAG00000016293)	ppp6r3 (ENSXMAG00000016259)	tmem170a (ENSXMAG00000026093)	ENSXMAG00000027585	ENSXMAG00000016233	lrp5 (ENSXMAG00000016162)	zgc:158868 (ENSXMAG00000016149)	bcar1 (ENSXMAG00000020876)	ENSXMAG00000016131	gal (ENSXMAG00000016121)	ENSXMAG00000021748
NAME_4	ANCESTRAL SPECIES	72	ENSGT00390000018285	ENSGT01100000263518.B.b.b.a	ENSGT01020000230364.a.a.b.a.z	ENSGT01020000230364.a.a.b.a.y.b	ENSGT01020000230364.a.a.b.b	ENSGT01020000230364.a.b	ENSGT00730000110895.b.a.o.a	ENSGT00390000014326	ENSGT01030000234550.a.a.d.a.a	ENSGT00590000083094.a.b.p	ENSGT00590000083094.a.b.o.a	ENSGT00940000159477	ENSGT00390000013249	ENSGT00940000155529.A	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a
Mummichog	MODERN SPECIES	2340	pot1 (ENSFHEG00000019966)	GPR37 (ENSFHEG00000019972)	SPAM1 (ENSFHEG00000020119)	ENSFHEG00000020134	HYAL4 (ENSFHEG00000020145)	hyal6 (ENSFHEG00000020171)	wasla (ENSFHEG00000020219)	IQUB (ENSFHEG00000020243)	slc13a1 (ENSFHEG00000020339)	ENSFHEG00000020350	CADPS2 (ENSFHEG00000020416)	fezf1 (ENSFHEG00000020444)	aass (ENSFHEG00000020618)	PTPRZ1 (ENSFHEG00000020707)	ANO1 (ENSFHEG00000020741)	ENSFHEG00000020785 #22	ENSFHEG00000020806
Sheepshead minnow	MODERN SPECIES	505									IQUB (ENSCVAG00000003616)	slc13a1 (ENSCVAG00000003568)	CADPS2 (ENSCVAG00000003547)	fezf1 (ENSCVAG00000003505)	aass (ENSCVAG00000003499)	PTPRZ1 (ENSCVAG00000003484)	ANO1 (ENSCVAG00000003438)	ENSCVAG00000003413 #22	arpc1a (ENSCVAG00000003359)	ENSCVAG00000003290 #25	ENSCVAG00000003278	ctcf (ENSCVAG00000003265)
Oryzias	ANCESTRAL SPECIES	143																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000153901.a.b.b	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b	ENSGT00390000008931	ENSGT00390000011262.e.a	ENSGT00940000165218.b	ENSGT00940000153229.A.a.a.a	ENSGT00940000160625.r.a	ENSGT00390000010852	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000158339	ENSGT00550000075044	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000155465.j	ENSGT00390000008748.b.h	ENSGT00940000154617.B.d	ENSGT00940000166216	ENSGT00940000155645.i.a	ENSGT00950000183211.a.a.b	ENSGT00980000202268	ENSGT00940000168375	ENSGT00940000163363	ENSGT00390000009663	ENSGT00940000165568	ENSGT00950000183008.a.b	ENSGT00940000166017	ENSGT00940000156574.C
Indian medaka	MODERN SPECIES	15	tnnt3a (ENSOMEG00000020063)	myod1 (ENSOMEG00000020091)	CACNA2D4 (ENSOMEG00000000936)	ENSOMEG00000020139	ENSOMEG00000020159	RFWD3 (ENSOMEG00000020218)	GLG1 (ENSOMEG00000020401)	ENSOMEG00000020438	urahb (ENSOMEG00000020448)	ENSOMEG00000020489	znf277 (ENSOMEG00000020520)	DUS2 (ENSOMEG00000020631)	ENSOMEG00000020663	ENSOMEG00000020675	immp2l (ENSOMEG00000000549)	ENSOMEG00000020736 #22	ENSOMEG00000020776 #25	ENSOMEG00000020830	ENSOMEG00000020854	ENSOMEG00000020889	ENSOMEG00000020901	ENSOMEG00000020929	ska1 (ENSOMEG00000020958)	NTRK3 (ENSOMEG00000000685)	pard6a (ENSOMEG00000021008)	ENSOMEG00000021024	gal (ENSOMEG00000021088)	ENSOMEG00000021106	bcar1 (ENSOMEG00000021126)	zgc:158868 (ENSOMEG00000021143)	lrp5 (ENSOMEG00000021239)
Javanese ricefish	MODERN SPECIES	20	ENSOJAG00000003563	ENSOJAG00000003546	tnnt3a (ENSOJAG00000003454)	myod1 (ENSOJAG00000003402)	ENSOJAG00000003382	RFWD3 (ENSOJAG00000003173)	GLG1 (ENSOJAG00000002985)	ENSOJAG00000002895	urahb (ENSOJAG00000002909)	ENSOJAG00000002852	znf277 (ENSOJAG00000002400)	DUS2 (ENSOJAG00000002235)	ENSOJAG00000002187	ENSOJAG00000002177	immp2l (ENSOJAG00000002152)	ENSOJAG00000001977 #22	ENSOJAG00000001918 #25	ENSOJAG00000001357	ENSOJAG00000001231	ENSOJAG00000001123	ska1 (ENSOJAG00000001070)	ENSOJAG00000001064	ENSOJAG00000001060	NTRK3 (ENSOJAG00000001012)	pard6a (ENSOJAG00000000984)	ENSOJAG00000000975	ENSOJAG00000000966	ENSOJAG00000000959	gal (ENSOJAG00000000949)	ENSOJAG00000000940	bcar1 (ENSOJAG00000000933)
Oryzias_a	ANCESTRAL SPECIES	1																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000155870.a.b	ENSGT00940000155323.a	ENSGT00940000166219	ENSGT00940000160121	ENSGT00940000157633	ENSGT00390000015016	ENSGT00940000155352.hb	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00730000112205	ENSGT00950000183017.b.a.a	ENSGT00940000157939	ENSGT00940000157584.a.a	ENSGT00950000182999.b.a.b
Chinese medaka	MODERN SPECIES	472																ENSOSIG00000004742 #22	ENSOSIG00000004747 #25	slc2a13b (ENSOSIG00000004752)	ENSOSIG00000005018	ENSOSIG00000015003	ENSOSIG00000015353
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000000721	ENSORLG00000027522	ENSORLG00000025119	RFWD3 (ENSORLG00000000737)	GLG1 (ENSORLG00000000767)	ENSORLG00000024437	ENSORLG00000000773	ENSORLG00000024074	urahb (ENSORLG00000029953)	ENSORLG00000000787	znf277 (ENSORLG00000000804)	immp2l (ENSORLG00000000811)	pdcd2l (ENSORLG00000000817)	ENSORLG00000027634	DUS2 (ENSORLG00000000833)	ENSORLG00000000847 #22	ENSORLG00000000851 #25	slc2a13b (ENSORLG00000000864)	KIF21A (ENSORLG00000000921)	ENSORLG00000030119	ENSORLG00000000955	cpa4 (ENSORLG00000000965)	smc1b (ENSORLG00000001003)	borcs5 (ENSORLG00000001021)	ENSORLG00000023297	ENSORLG00000001022	rnf141 (ENSORLG00000001041)	ENSORLG00000001060	admb (ENSORLG00000024948)	swap70b (ENSORLG00000001090)	wee1 (ENSORLG00000001112)
Percomorphaceae_C	ANCESTRAL SPECIES	5															ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Eupercaria	ANCESTRAL SPECIES	33	ENSGT00390000018141	ENSGT00390000009663	ENSGT00940000165046.a	ENSGT00940000168375	ENSGT00980000202268	ENSGT00950000183211.a.a.b	ENSGT00940000155645.i.a	ENSGT00940000160936	ENSGT00940000166216	ENSGT00940000154146.b.b.b	ENSGT00950000182983.B.b	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000165568	ENSGT00950000183008.a.b	ENSGT00940000166017	ENSGT00940000157816.a.a	ENSGT00940000156574.C	ENSGT00940000170837
Tetraodontidae	ANCESTRAL SPECIES	153													ENSGT00940000166216	ENSGT00950000182983.B.b	ENSGT00940000157182.g.a	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627
Fugu	MODERN SPECIES	21										ENSTRUG00000030030	zc3h18 (ENSTRUG00000027014)	ska1 (ENSTRUG00000017348)	KLHL25 (ENSTRUG00000033145)	lrp5 (ENSTRUG00000017350)	ANO1 (ENSTRUG00000017361)	ENSTRUG00000017375 #22	ENSTRUG00000017382 #25	ENSTRUG00000030938	ric8a (ENSTRUG00000017385)	ppp6r3 (ENSTRUG00000004409)	tmem170a (ENSTRUG00000021185)	ENSTRUG00000023672	ENSTRUG00000021272	ENSTRUG00000027879	ENSTRUG00000026522	ENSTRUG00000031943	ENSTRUG00000031291	psme3ip1 (ENSTRUG00000002671)	ENSTRUG00000003072	necab2 (ENSTRUG00000003910)	SLC38A8 (ENSTRUG00000004695)
Tetraodon	MODERN SPECIES	26	socs4 (ENSTNIG00000018804)	ENSTNIG00000002434	fam98b (ENSTNIG00000002436)	ndrg2 (ENSTNIG00000002441)	neurod4 (ENSTNIG00000002442)	ENSTNIG00000002443	ENSTNIG00000002447	ENSTNIG00000001596	ENSTNIG00000002457	ARSD (ENSTNIG00000002458)	ENSTNIG00000001271	ENSTNIG00000000880	ENSTNIG00000002468	ENSTNIG00000002469	ENSTNIG00000002470	ENSTNIG00000002471 #22	HCK (ENSTNIG00000002534)	slc18a2 (ENSTNIG00000002535)	PDZD8 (ENSTNIG00000000196)	ATP8B1 (ENSTNIG00000002536)	txnl1 (ENSTNIG00000002537)	ENSTNIG00000002208	naif1 (ENSTNIG00000002538)	TECTA (ENSTNIG00000002539)	ENSTNIG00000002545	SYDE1 (ENSTNIG00000002546)	ENSTNIG00000001261	ENSTNIG00000002555	ENSTNIG00000002556	ENSTNIG00000002557	ENSTNIG00000002558
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000165568	ENSGT00950000183008.a.b	ENSGT00940000166017	ENSGT00940000157816.a.a	ENSGT00940000156574.C	ENSGT00940000170837
Ballan wrasse	MODERN SPECIES	392	ENSLBEG00000007517	ENSLBEG00000007731	ENSLBEG00000008112	cstpp1 (ENSLBEG00000008134)	ckap5 (ENSLBEG00000008181)	ENSLBEG00000008292	dnaaf4 (ENSLBEG00000008328)	anpepb.1 (ENSLBEG00000008347)	ANPEP (ENSLBEG00000008432)	ENSLBEG00000008494	CHST1 (ENSLBEG00000008571)	zgc:101566 (ENSLBEG00000008613)	ANO1 (ENSLBEG00000008646)	ENSLBEG00000008733	ENSLBEG00000008751	ENSLBEG00000008792 #22	ENSLBEG00000008866 #25
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Eupecaria_C	ANCESTRAL SPECIES	29	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000165568	ENSGT00950000183008.a.b	ENSGT00940000166017	ENSGT00940000157816.a.a	ENSGT00940000156574.C
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	36	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000161262.b	ENSGT00390000013899.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT00390000018141	ENSGT00950000183008.a.b	ENSGT00940000166017	ENSGT00940000157816.a.a	ENSGT00940000156574.C	ENSGT00940000153377.B	ENSGT01100000263627
European seabass	MODERN SPECIES	19	cstpp1 (ENSDLAG00005019599)	ckap5 (ENSDLAG00005019622)	ENSDLAG00005001342	ENSDLAG00005033357	ENSDLAG00005026900	ENSDLAG00005032759	ENSDLAG00005001580	ENSDLAG00005005089	ENSDLAG00005005102	ENSDLAG00005004831	ENSDLAG00005031021	ENSDLAG00005005136	ENSDLAG00005005139	ENSDLAG00005005243	ENSDLAG00005026515	ENSDLAG00005008609 #22	ENSDLAG00005011483	ENSDLAG00005034975 #25	ripor1 (ENSDLAG00005009217)	ENSDLAG00005009429	carmil2 (ENSDLAG00005009458)	ENSDLAG00005027262	ppp6r3 (ENSDLAG00005009527)	ENSDLAG00005027123	ENSDLAG00005021727	ENSDLAG00005005586	ENSDLAG00005002566	ENSDLAG00005011302	ENSDLAG00005029008	ENSDLAG00005027769	ENSDLAG00005011271
Large yellow croaker	MODERN SPECIES	492											ENSLCRG00005012925	CHST1 (ENSLCRG00005012923)	zgc:101566 (ENSLCRG00005012921)	ANO1 (ENSLCRG00005012886)	ENSLCRG00005012877	ENSLCRG00005011974 #22	ENSLCRG00005011922 #25	ENSLCRG00005011920	ENSLCRG00005011919	ripor1 (ENSLCRG00005011887)	ENSLCRG00005011884	carmil2 (ENSLCRG00005011876)	ric8a (ENSLCRG00005011628)	ppp6r3 (ENSLCRG00005011587)	tmem170a (ENSLCRG00005011554)	ENSLCRG00005011552	ENSLCRG00005011550	ENSLCRG00005011548	ENSLCRG00005011546	cfdp1 (ENSLCRG00005011543)	bcar1 (ENSLCRG00005011537)
Gilthead seabream	MODERN SPECIES	22	ENSSAUG00010019533	cstpp1 (ENSSAUG00010019534)	ENSSAUG00010019536	cry2 (ENSSAUG00010019549)	ENSSAUG00010019898	KLHL25 (ENSSAUG00010019905)	ENSSAUG00010019906	ENSSAUG00010019908	has3 (ENSSAUG00010019910)	CHST1 (ENSSAUG00010019912)	ENSSAUG00010019913	zgc:101566 (ENSSAUG00010019914)	ENSSAUG00010019915	ANO1 (ENSSAUG00010019940)	ENSSAUG00010020658	ENSSAUG00010020697 #22	ENSSAUG00010021767 #25	ENSSAUG00010021769	ENSSAUG00010021770	ripor1 (ENSSAUG00010021781)	ctcf (ENSSAUG00010021787)	ENSSAUG00010021792	ENSSAUG00010021799	ENSSAUG00010021800	ric8a (ENSSAUG00010021803)	ppp6r3 (ENSSAUG00010021811)	tmem170a (ENSSAUG00010021867)	COX8b (ENSSAUG00010021868)	ENSSAUG00010021870	ENSSAUG00010021872	NTRK3 (ENSSAUG00010021890)
Perciformes	ANCESTRAL SPECIES	28	ENSGT00980000198638	ENSGT00400000022168.b	ENSGT00940000165829	ENSGT00940000165415.i	ENSGT00950000182872.f.b.a.e	ENSGT00390000001622	ENSGT00940000159278	ENSGT00940000158705	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00950000182939.a.b.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Cottioidei	ANCESTRAL SPECIES	32	ENSGT01100000263545.a.b.d.a	ENSGT00940000155044.B	ENSGT00940000155456.f.g	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000170472	ENSGT00390000007975.a.b.b	ENSGT00940000157523.g.b	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000159028	ENSGT00940000153962.a	ENSGT00940000157791	ENSGT00390000006367.d	ENSGT00390000000221.A.d	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a	ENSGT01100000263484.B.a	ENSGT00730000111190
Lumpfish	MODERN SPECIES	21	mbtps1 (ENSCLMG00005002718)	SLC38A8 (ENSCLMG00005002726)	necab2 (ENSCLMG00005002727)	KLHL25 (ENSCLMG00005002729)	ENSCLMG00005002731	cetp (ENSCLMG00005002732)	slc12a3 (ENSCLMG00005002734)	zgc:162634 (ENSCLMG00005003115)	PIGY (ENSCLMG00005003118)	btbd10a (ENSCLMG00005003128)	bmal1a (ENSCLMG00005003168)	PPFIBP2 (ENSCLMG00005003777)	poglut3 (ENSCLMG00005005235)	ENSCLMG00005005236	ENSCLMG00005005237	ENSCLMG00005005240 #22	ENSCLMG00005005869 #25	ripor1 (ENSCLMG00005005870)	ctcf (ENSCLMG00005005872)	ric8a (ENSCLMG00005005890)	ppp6r3 (ENSCLMG00005005924)	CMIP (ENSCLMG00005006136)	GAN (ENSCLMG00005006232)	ENSCLMG00005006242	foxl1 (ENSCLMG00005006244)	kiaa0513 (ENSCLMG00005006245)	ces3 (ENSCLMG00005006249)	zfpm1 (ENSCLMG00005006630)	trhr2 (ENSCLMG00005006632)	zc3h18 (ENSCLMG00005006641)	ENSCLMG00005006656
Stickleback	MODERN SPECIES	14	ANO1 (ENSGACG00000002381)	cry2 (ENSGACG00000002398)	cetp (ENSGACG00000002410)	slc12a3 (ENSGACG00000002419)	galnt18a (ENSGACG00000002430)	zgc:162634 (ENSGACG00000002434)	ENSGACG00000002436	btbd10a (ENSGACG00000002437)	bmal1a (ENSGACG00000002445)	PPFIBP2 (ENSGACG00000002452)	poglut3 (ENSGACG00000002456)	cyb5r2 (ENSGACG00000002457)	OVCH2 (ENSGACG00000002468)	far1 (ENSGACG00000002476)	ENSGACG00000002487	ENSGACG00000002490 #22	ENSGACG00000002495 #25	ripor1 (ENSGACG00000002497)	ctcf (ENSGACG00000002504)	carmil2 (ENSGACG00000002509)	ENSGACG00000002513	ric8a (ENSGACG00000002515)	ppp6r3 (ENSGACG00000002520)	ENSGACG00000002527	ENSGACG00000002528	GAN (ENSGACG00000002529)	ENSGACG00000002537	kiaa0513 (ENSGACG00000002538)	ces3 (ENSGACG00000002541)	zfpm1 (ENSGACG00000002554)	trhr2 (ENSGACG00000002560)
Perciformes_a	ANCESTRAL SPECIES	30	ENSGT00980000198638	ENSGT00400000022168.b	ENSGT00940000165829	ENSGT00940000165415.i	ENSGT00950000182872.f.b.a.e	ENSGT00390000001622	ENSGT00940000159278	ENSGT00940000158705	ENSGT00510000048902.b	ENSGT00530000064251	ENSGT00940000164605	ENSGT00390000013269	ENSGT00950000182939.a.b.b	ENSGT00940000157182.g.a	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Channel bull blenny	MODERN SPECIES	20	smpd3 (ENSCGOG00000008645)	ENSCGOG00000008654	ENSCGOG00000008655	ndrg4 (ENSCGOG00000008677)	gins3 (ENSCGOG00000009532)	znrf1 (ENSCGOG00000009546)	ENSCGOG00000009553	ldhd (ENSCGOG00000009557)	ENSCGOG00000009781	arpin (ENSCGOG00000009794)	anpeplb (ENSCGOG00000009810)	si:dkey-12e7.1 (ENSCGOG00000009918)	chka (ENSCGOG00000009935)	ANO1 (ENSCGOG00000010581)	ENSCGOG00000012139	ENSCGOG00000012142 #22	ENSCGOG00000012167 #25	ripor1 (ENSCGOG00000012180)	carmil2 (ENSCGOG00000012360)	ENSCGOG00000012365	slc12a3 (ENSCGOG00000012366)	ric8a (ENSCGOG00000012373)	ENSCGOG00000012429	ppp6r3 (ENSCGOG00000012430)	ENSCGOG00000012433	lrp5 (ENSCGOG00000012460)	CCND1 (ENSCGOG00000013654)	zgc:158868 (ENSCGOG00000013655)	bcar1 (ENSCGOG00000013656)	cfdp1 (ENSCGOG00000013658)	gal (ENSCGOG00000013660)
Pike perch	MODERN SPECIES	67	gins3 (ENSSLUG00000001927)	znrf1 (ENSSLUG00000001917)	ldhd (ENSSLUG00000001869)	ENSSLUG00000001838	arpin (ENSSLUG00000001826)	anpeplb (ENSSLUG00000001714)	si:dkey-12e7.1 (ENSSLUG00000001627)	chka (ENSSLUG00000001575)	ENSSLUG00000001502	ENSSLUG00000001497	ENSSLUG00000001481	ENSSLUG00000001472	ENSSLUG00000017936	ENSSLUG00000017933	ENSSLUG00000017931	ENSSLUG00000017753 #22	ENSSLUG00000017744 #25	POGK (ENSSLUG00000017738)	ripor1 (ENSSLUG00000017484)	ctcf (ENSSLUG00000017393)	ENSSLUG00000017377	carmil2 (ENSSLUG00000017354)	zgc:113625 (ENSSLUG00000017346)	ric8a (ENSSLUG00000017255)	ppp6r3 (ENSSLUG00000016881)	tmem170a (ENSSLUG00000016823)	ENSSLUG00000016818	ENSSLUG00000016815	lrp5 (ENSSLUG00000013018)	CCND1 (ENSSLUG00000012894)	zgc:158868 (ENSSLUG00000012885)
Percomorphaceae_D	ANCESTRAL SPECIES	5															ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Carangaria	ANCESTRAL SPECIES	36															ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Pleuronectoidei	ANCESTRAL SPECIES	91																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Turbot	MODERN SPECIES	1	ABHD2 (ENSSMAG00000004568)	rlbp1b (ENSSMAG00000004552)	ENSSMAG00000004520	pdia3 (ENSSMAG00000004475)	ENSSMAG00000004451	ENSSMAG00000004425	ENSSMAG00000037494	si:ch1073-281m9.1 (ENSSMAG00000004421)	alkbh3 (ENSSMAG00000004404)	hsd17b12a (ENSSMAG00000004377)	api5 (ENSSMAG00000004332)	ENSSMAG00000031849	ENSSMAG00000004289	ENSSMAG00000004277	ENSSMAG00000004259	ENSSMAG00000004243 #22	ENSSMAG00000004223 #25	ripor1 (ENSSMAG00000004172)	ENSSMAG00000004154	carmil2 (ENSSMAG00000004112)	ENSSMAG00000004083	ENSSMAG00000003943	ENSSMAG00000034988	ENSSMAG00000003916	ENSSMAG00000034370	ENSSMAG00000003833	ENSSMAG00000003806	ENSSMAG00000003794	ENSSMAG00000003746	ENSSMAG00000003724	ENSSMAG00000035143
Tongue sole	MODERN SPECIES	16	ENSCSEG00000021223	setd6 (ENSCSEG00000021220)	wt1a (ENSCSEG00000021216) #20	ENSCSEG00000021214 #15	tcp11l1 (ENSCSEG00000021212) #14	hipk3a (ENSCSEG00000021210) ##12	drd4a (ENSCSEG00000021206)	deaf1 (ENSCSEG00000021204)	BET1L (ENSCSEG00000021203)	atp2b1b (ENSCSEG00000021198)	ENSCSEG00000021196	ENSCSEG00000021191	ENSCSEG00000021190	kitlga (ENSCSEG00000021184)	ENSCSEG00000021136	ENSCSEG00000021135 #22	ENSCSEG00000021134 #25	ripor1 (ENSCSEG00000021133)	ctcf (ENSCSEG00000021131)	carmil2 (ENSCSEG00000021128)	ric8a (ENSCSEG00000021127)	ppp6r3 (ENSCSEG00000021125)	tmem170a (ENSCSEG00000021124)	ENSCSEG00000021123	ENSCSEG00000021122	ENSCSEG00000021121	lrp5 (ENSCSEG00000021120)	necab2 (ENSCSEG00000021020)	ENSCSEG00000021016	pnp6 (ENSCSEG00000021014)	calb2a (ENSCSEG00000021011)
Carangaria_A	ANCESTRAL SPECIES	87															ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT01100000263627	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141	ENSGT00390000009663
Barramundi perch	MODERN SPECIES	7								ENSLCAG00010001116	ENSLCAG00010001109	ENSLCAG00010001030	ENSLCAG00010001015	ENSLCAG00010000773	WFIKKN2 (ENSLCAG00010000612)	ENSLCAG00010000605	ENSLCAG00010000594	ENSLCAG00010000501 #22	ENSLCAG00010000464 #25	ripor1 (ENSLCAG00010000438)	ENSLCAG00010000421	carmil2 (ENSLCAG00010000393)	ric8a (ENSLCAG00010000369)	ppp6r3 (ENSLCAG00010000235)	tmem170a (ENSLCAG00010000143)	ENSLCAG00010025811	ENSLCAG00010025808	lrp5 (ENSLCAG00010025409)	CCND1 (ENSLCAG00010025075)	ENSLCAG00010025070	bcar1 (ENSLCAG00010025054)	cfdp1 (ENSLCAG00010025045)	gal (ENSLCAG00010025039)
Seriola	ANCESTRAL SPECIES	121										ENSGT00400000022168.b	ENSGT00940000165829	ENSGT00940000165415.i	ENSGT00390000010067	ENSGT00940000160728.i	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000159189	ENSGT00940000168817.u	ENSGT01100000263627	ENSGT00940000170837	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00390000018141
Yellowtail amberjack	MODERN SPECIES	3283	KLHL25 (ENSSLDG00000001445)	ENSSLDG00000001523	ANO1 (ENSSLDG00000001538)	ENSSLDG00000001639	zgc:101566 (ENSSLDG00000001654)	CHST1 (ENSSLDG00000001664)	smpd3 (ENSSLDG00000001704)	ENSSLDG00000001714	ENSSLDG00000001741	pop4 (ENSSLDG00000001763)	PLEKHF1 (ENSSLDG00000001801)	ENSSLDG00000001827	ENSSLDG00000001850	ENSSLDG00000001860	ENSSLDG00000001894	ENSSLDG00000001910 #22	ENSSLDG00000001945 #25	ripor1 (ENSSLDG00000001962)	ENSSLDG00000002045	ENSSLDG00000002062	carmil2 (ENSSLDG00000002091)	ric8a (ENSSLDG00000002223)	ppp6r3 (ENSSLDG00000002277)	tmem170a (ENSSLDG00000002446)	ENSSLDG00000002468	ENSSLDG00000002475	ENSSLDG00000002485	lrp5 (ENSSLDG00000002497)	ENSSLDG00000002623	CCND1 (ENSSLDG00000002651)	zgc:158868 (ENSSLDG00000002661)
Greater amberjack	MODERN SPECIES	144					ENSSDUG00000019731	ENSSDUG00000019773	ENSSDUG00000019788	smpd3 (ENSSDUG00000019796)	ENSSDUG00000019820	ENSSDUG00000019827	pop4 (ENSSDUG00000019865)	PLEKHF1 (ENSSDUG00000019888)	ENSSDUG00000019890	ENSSDUG00000019901	ENSSDUG00000019911	ENSSDUG00000019922 #22	ENSSDUG00000019945 #25	ripor1 (ENSSDUG00000019954)	ENSSDUG00000020012	ctcf (ENSSDUG00000020026)	carmil2 (ENSSDUG00000020088)	ric8a (ENSSDUG00000020163)	ppp6r3 (ENSSDUG00000020348)	tmem170a (ENSSDUG00000020432)	ENSSDUG00000020450	ENSSDUG00000020533	ENSSDUG00000020537	lrp5 (ENSSDUG00000020552)	CCND1 (ENSSDUG00000020651)	zgc:158868 (ENSSDUG00000020658)	bcar1 (ENSSDUG00000020666)
Anabantaria	ANCESTRAL SPECIES	5																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00940000153377.B	ENSGT01100000263627	ENSGT00940000159189	ENSGT00940000156574.C	ENSGT00940000157816.a.a	ENSGT00940000166017	ENSGT00950000183008.a.b	ENSGT00940000165568	ENSGT00390000018141
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000012010	zc3h18 (ENSMAMG00000011979)	ENSMAMG00000011967	UTP4 (ENSMAMG00000011957)	chtf8 (ENSMAMG00000024260)	HAS3 (ENSMAMG00000011817)	TANGO6 (ENSMAMG00000011798)	cry2 (ENSMAMG00000011756)	ENSMAMG00000011713	cstpp1 (ENSMAMG00000011696)	ckap5 (ENSMAMG00000011652)	ENSMAMG00000011633	ENSMAMG00000011543	ENSMAMG00000011489	ENSMAMG00000011461	ENSMAMG00000011442 #22	ENSMAMG00000011435 #25	ENSMAMG00000011432	ripor1 (ENSMAMG00000011408)	ENSMAMG00000011357	carmil2 (ENSMAMG00000011349)	ENSMAMG00000011327	ENSMAMG00000011235	ENSMAMG00000024413	ENSMAMG00000011203	ENSMAMG00000011195	lrp5 (ENSMAMG00000011108)	ENSMAMG00000011083	ENSMAMG00000011067	ENSMAMG00000011047	ENSMAMG00000011032
Anabantoidei	ANCESTRAL SPECIES	79																ENSGT00940000155391.a.a #22	ENSGT00390000005430 #25
Climbing perch	MODERN SPECIES	19															ENSATEG00000027403	ENSATEG00000003391 #22	ENSATEG00000007671	ENSATEG00000003425 #25	ENSATEG00000003489	ENSATEG00000003530	carmil2 (ENSATEG00000003884)	ENSATEG00000003920	ripor1 (ENSATEG00000003983)	tmem170a (ENSATEG00000004279)	ENSATEG00000004298	ENSATEG00000028027	lrp5 (ENSATEG00000004330)	ENSATEG00000004455	ENSATEG00000004461	ENSATEG00000004489	ENSATEG00000004519
Siamese fighting fish	MODERN SPECIES	17	polr2c (ENSBSLG00000007101)	wwp2 (ENSBSLG00000007268)	adat1 (ENSBSLG00000009123)	gabarapl2 (ENSBSLG00000009199)	tmem231 (ENSBSLG00000009249)	chst6 (ENSBSLG00000009301)	ENSBSLG00000009313	ENSBSLG00000009319	ENSBSLG00000009322	ripor1 (ENSBSLG00000009335)	ENSBSLG00000009411	ctcf (ENSBSLG00000009419)	carmil2 (ENSBSLG00000009476)	ric8a (ENSBSLG00000009558)	ppp6r3 (ENSBSLG00000009581)	ENSBSLG00000010711 #22	ENSBSLG00000011073 #25	ENSBSLG00000011081	ENSBSLG00000011085	tmem170a (ENSBSLG00000011092)	lrp5 (ENSBSLG00000012094)	bcar1 (ENSBSLG00000016700)	ENSBSLG00000016882	cfdp1 (ENSBSLG00000016889)	gal (ENSBSLG00000000523)	pard6a (ENSBSLG00000000593)	NTRK3 (ENSBSLG00000000671)	ENSBSLG00000000758	ENSBSLG00000000761	ENSBSLG00000000776	setd6 (ENSBSLG00000000802)
Tiger tail seahorse	MODERN SPECIES	113	chst6 (ENSHCOG00000006848)	ENSHCOG00000006864	ENSHCOG00000006883	ENSHCOG00000006911	pdf (ENSHCOG00000006928)	tat (ENSHCOG00000006957)	polr2c (ENSHCOG00000007066)	coq9 (ENSHCOG00000000212)	ciapin1 (ENSHCOG00000007096)	prmt7 (ENSHCOG00000007157)	exoc3l1 (ENSHCOG00000007196)	meak7 (ENSHCOG00000007211)	plcg2 (ENSHCOG00000007237)	ANO1 (ENSHCOG00000007282)	KLHL25 (ENSHCOG00000007319)	ENSHCOG00000007340 #22	ENSHCOG00000007348 #25	lamb1a (ENSHCOG00000007401)	ENSHCOG00000000251	ENSHCOG00000007453	ENSHCOG00000007458	ENSHCOG00000007482	ENSHCOG00000007501	ENSHCOG00000007511
Pinecone sodierfish	MODERN SPECIES	20	ccl35.1 (ENSMMDG00005017169)	smpd3 (ENSMMDG00005017171)	ENSMMDG00005017175	ENSMMDG00005017181	ndrg4 (ENSMMDG00005017184)	gins3 (ENSMMDG00005017188)	znrf1 (ENSMMDG00005017189)	ldhd (ENSMMDG00005017196)	ENSMMDG00005017374	arpin (ENSMMDG00005017377)	anpeplb (ENSMMDG00005017379)	si:dkey-12e7.1 (ENSMMDG00005017388)	chka (ENSMMDG00005017389)	ENSMMDG00005017392	ANO1 (ENSMMDG00005017393)	ENSMMDG00005017410 #22	ENSMMDG00005017669 #25	FGF4 (ENSMMDG00005017679)	ripor1 (ENSMMDG00005017706)	ctcf (ENSMMDG00005017993)	carmil2 (ENSMMDG00005018001)	tmem170a (ENSMMDG00005018010)	ENSMMDG00005018011	bcar1 (ENSMMDG00005018015)	zgc:158868 (ENSMMDG00005018019)	ENSMMDG00005000137	ENSMMDG00005000154	pnp6 (ENSMMDG00005000173)	calb2a (ENSMMDG00005000195)	si:dkey-12e7.4 (ENSMMDG00005000223)	ENSMMDG00005000253
Cod	MODERN SPECIES	22	ENSGMOG00000007003	ENSGMOG00000006995	ENSGMOG00000006977	ENSGMOG00000006960	ENSGMOG00000024261	tspan33b (ENSGMOG00000004617)	ttc38 (ENSGMOG00000004593)	mical3a (ENSGMOG00000004543)	ENSGMOG00000004511 ##10	ENSGMOG00000004450	parp12a (ENSGMOG00000009778)	parp12a (ENSGMOG00000016384)	ENSGMOG00000016398	ENSGMOG00000002146	ENSGMOG00000001705	ENSGMOG00000019087 #22	ENSGMOG00000019094 #25	ENSGMOG00000031857	zgc:77752 (ENSGMOG00000025842)	ENSGMOG00000019109	ENSGMOG00000002614	ENSGMOG00000003720	ENSGMOG00000034918	ENSGMOG00000022829	ENSGMOG00000029283	ENSGMOG00000003787	ENSGMOG00000020282	erc1a (ENSGMOG00000018675)	ENSGMOG00000034982	rad52 (ENSGMOG00000018563)	ENSGMOG00000018550
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155391.a.b.a #22
Osteoglossiformes	ANCESTRAL SPECIES	68	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000160055	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a.h #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a.i #17	ENSGT01060000248747	ENSGT00390000004456.a #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.a #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00390000007681.b.a.a ##27	ENSGT00940000164122.a.a	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663	ENSGT00950000183093.B	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00390000014757
Asian bonytongue	MODERN SPECIES	2	OLFML1 (ENSSFOG00015022031)	SYT9 (ENSSFOG00015022038)	spon1a (ENSSFOG00015022054)	hipk3b (ENSSFOG00015022090) #12	cstf3 (ENSSFOG00015022133) #13	tcp11l1 (ENSSFOG00015022158) #14	depdc7a (ENSSFOG00015022174) #15	QSER1 (ENSSFOG00015022192) #16	prrg4 (ENSSFOG00015022201) #17	ENSSFOG00015022219	EIF3M (ENSSFOG00015022250) #19	wt1a (ENSSFOG00015022275) #20	ENSSFOG00015026198	RCN1 (ENSSFOG00015031829) #21	elp4 (ENSSFOG00015022306) #23	pax6a (ENSSFOG00015022354) #22	immp1l (ENSSFOG00015022420) #24	dnajc24 (ENSSFOG00015022427) #25	mpped2a (ENSSFOG00015022438) ##27	ENSSFOG00015022457	zdhhc13 (ENSSFOG00015022492)	csrp3 (ENSSFOG00015022509)	e2f8 (ENSSFOG00015022531)	NAV2 (ENSSFOG00015022588)	dbx1a (ENSSFOG00015022794)	htatip2 (ENSSFOG00015027816)	prmt3 (ENSSFOG00015022824)	slc6a5 (ENSSFOG00015022864)	NELL1 (ENSSFOG00015022874)	ckap5 (ENSSFOG00015022916)	lrp4 (ENSSFOG00015022948)
P. kingsleyae	MODERN SPECIES	1313																pax6a (ENSPKIG00000019558) #22
Clupeocephala	ANCESTRAL SPECIES	31	ENSGT00940000163017	ENSGT00530000063702.a.b	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00950000182976.a.b.c #15	ENSGT01060000248747.b	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00940000155663.f.a	ENSGT00950000183093.B.b
Euteleosteomorpha	ANCESTRAL SPECIES	20	ENSGT00390000000221.A.d	ENSGT00390000006367.d	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00940000155663.f.a	ENSGT00950000183093.B.b
Protacanthopterygii	ANCESTRAL SPECIES	29	ENSGT00390000000221.A.d	ENSGT00390000006367.d	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402.i #14	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00390000007681.b.a.a ##27	ENSGT00940000155663.f.a	ENSGT00950000183093.B.b	ENSGT00390000003145	ENSGT00950000183011.c.a.b.f	ENSGT00940000162514	ENSGT00940000156003.l.a	ENSGT00390000010382	ENSGT00390000005941.d	ENSGT00390000010852	ENSGT00940000164174	ENSGT00940000160513.b	ENSGT00550000075044	ENSGT00940000156482.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	822															ENSGT00940000156734.a.d #20	ENSGT00940000155391.a.b.a.a #22	ENSGT00390000005430.v #25	ENSGT00970000197520	ENSGT00390000007681.b.a.a.t.b ##27	ENSGT00940000155663.f.a.c	ENSGT00950000183093.B.b.c	ENSGT00390000003145.t	ENSGT00950000183011.c.a.b.f.c
Huchen	MODERN SPECIES	225								spon1b (ENSHHUG00000033037)	ENSHHUG00000033028 #10	ENSHHUG00000033019 #10	ENSHHUG00000033011 #10	ENSHHUG00000033010 #10	ENSHHUG00000032997 ##12	tcp11l1 (ENSHHUG00000032985) #14	wt1a (ENSHHUG00000032965) #20	pax6a (ENSHHUG00000032701) #22	dnajc24 (ENSHHUG00000032694) #25	ENSHHUG00000032692	mpped2 (ENSHHUG00000032674) ##27	NAV2 (ENSHHUG00000032382)	dbx1b (ENSHHUG00000032361)	rnf141 (ENSHHUG00000032358)	AMPD3 (ENSHHUG00000032047)
Salmoninae_a	ANCESTRAL SPECIES	83															ENSGT00940000156734.a.d #20	ENSGT00940000155391.a.b.a.a #22	ENSGT00990000213553	ENSGT00970000197520	ENSGT00390000007681.b.a.a.t.b ##27	ENSGT00940000155663.f.a.c	ENSGT00950000183093.B.b.c	ENSGT00390000003145.t	ENSGT00950000183011.c.a.b.f.c	ENSGT00940000162514	ENSGT00940000156003.l.a.q	ENSGT00390000010382.d	ENSGT00550000075044.c.a	ENSGT00940000160513.b.a	ENSGT00940000156131.a.a.e	ENSGT00940000156469.a.a	ENSGT00390000009456.p
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00390000007975.a.b.b.d	ENSGT00940000157523.g.b.d	ENSGT00950000182839.A.d.a.a.d	ENSGT00950000182956.b.b.a.a.c.b.e	ENSGT00950000183194.a.b.e.b.b	ENSGT00940000158780.e.c	ENSGT00390000006367.d.e.a	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a.g.a.a	ENSGT00940000155948.b.b.c	ENSGT00940000154910.b.a.c	ENSGT00530000063472.b.b.a.b.a.b.c.a.a #10	ENSGT00940000155960.a.a.a ##12	ENSGT00940000157402.i #14	ENSGT00940000156734.a.d #20	ENSGT00940000155391.a.b.a.a #22	ENSGT00990000213553	ENSGT01000000220439	ENSGT00390000007681.b.a.a.t.b ##27	ENSGT00940000155663.f.a.c	ENSGT00950000183093.B.b.c	ENSGT00390000003145.t	ENSGT00950000183011.c.a.b.f.c	ENSGT00940000162514	ENSGT00940000156003.l.a.q	ENSGT00390000010382.d	ENSGT00550000075044.d	ENSGT00940000160513.b.a	ENSGT00940000156131.a.a.e	ENSGT00940000156469.a.a	ENSGT00390000009456.p
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00390000007975.a.b.b.d	ENSGT00940000157523.g.b.d	ENSGT00950000182839.A.d.a.a.d	ENSGT00950000182956.b.b.a.a.c.b.e	ENSGT00950000183194.a.b.e.b.b	ENSGT00940000158780.e.c	ENSGT00390000006367.d.e.a	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a.g.a.a	ENSGT00940000155948.b.b.c	ENSGT00940000154910.b.a.c	ENSGT00530000063472.b.b.a.b.a.b.c.a.a #10	ENSGT00940000155960.a.a.a ##12	ENSGT00940000157402.i #14	ENSGT00940000156734.a.d #20	ENSGT00940000155391.a.b.a.a #22	ENSGT00390000005430.v #25	ENSGT01000000220439	ENSGT00390000007681.b.a.a.t.b ##27	ENSGT00940000155663.f.a.c	ENSGT00950000183093.B.b.c	ENSGT00390000003145.t	ENSGT00950000183011.c.a.b.f.c	ENSGT00940000162514	ENSGT00940000156003.l.a.q	ENSGT00390000010382.d	ENSGT00550000075044.d	ENSGT00940000160513.b.a	ENSGT00940000156131.a.a.e	ENSGT00940000156469.a.a	ENSGT00390000009456.p
Coho salmon	MODERN SPECIES	24	bmal1a (ENSOKIG00005045944)	RASSF10 (ENSOKIG00005046837)	tead1a (ENSOKIG00005046864)	PARVA (ENSOKIG00005047034)	mical2b (ENSOKIG00005047163)	far1 (ENSOKIG00005047345)	ENSOKIG00005047429	cyb5r2 (ENSOKIG00005047440)	PPFIBP2 (ENSOKIG00005047557)	syt9b (ENSOKIG00005047903)	spon1b (ENSOKIG00005047935)	ENSOKIG00005048081 #10	hipk3a (ENSOKIG00005048108) ##12	tcp11l1 (ENSOKIG00005048276) #14	wt1a (ENSOKIG00005048293) #20	pax6a (ENSOKIG00005048391) #22	dnajc24 (ENSOKIG00005049040) #25	ENSOKIG00005049056	ENSOKIG00005049070 ##27	NAV2 (ENSOKIG00005049089)	DBX1 (ENSOKIG00005049177)	RNF141 (ENSOKIG00005049179)	AMPD3 (ENSOKIG00005006881)	lamb4 (ENSOKIG00005007077)	lamb1a (ENSOKIG00005007399)	BMT2 (ENSOKIG00005008359)	immp2l (ENSOKIG00005008371)	LRRN3 (ENSOKIG00005008415)	ENSOKIG00005008423	SLC7A10 (ENSOKIG00005008505)	faap24 (ENSOKIG00005009164)
Chinook salmon	MODERN SPECIES	30	btbd10a (ENSOTSG00005044653)	bmal1a (ENSOTSG00005044663)	RASSF10 (ENSOTSG00005045241)	tead1a (ENSOTSG00005045242)	PARVA (ENSOTSG00005045260)	mical2b (ENSOTSG00005045283)	far1 (ENSOTSG00005045344)	cyb5r2 (ENSOTSG00005045347)	PPFIBP2 (ENSOTSG00005045351)	syt9b (ENSOTSG00005011422)	spon1b (ENSOTSG00005011423)	ENSOTSG00005011465 #10	hipk3a (ENSOTSG00005011471) ##12	tcp11l1 (ENSOTSG00005011745) #14	wt1a (ENSOTSG00005011765) #20	pax6a (ENSOTSG00005011797) #22	dnajc24 (ENSOTSG00005014044) #25	ENSOTSG00005014046	mpped2 (ENSOTSG00005014048) ##27	NAV2 (ENSOTSG00005014066)	dbx1b (ENSOTSG00005014949)	rnf141 (ENSOTSG00005014950)	AMPD3 (ENSOTSG00005014953)	lamb4 (ENSOTSG00005015132)	lamb1a (ENSOTSG00005015167)	bmt2 (ENSOTSG00005027947)	immp2l (ENSOTSG00005027949)	LRRN3 (ENSOTSG00005027951)	ENSOTSG00005027952	SLC7A10 (ENSOTSG00005027957)	faap24 (ENSOTSG00005028368)
Rainbow trout	MODERN SPECIES		RASSF10 (ENSOMYG00000020802)	tead1a (ENSOMYG00000020914)	PARVA (ENSOMYG00000021220)	mical2b (ENSOMYG00000021444)	ENSOMYG00000076958	ENSOMYG00000021700	cyb5r2 (ENSOMYG00000021819)	PPFIBP2 (ENSOMYG00000021921)	syt9b (ENSOMYG00000022041)	spon1b (ENSOMYG00000022280)	ENSOMYG00000000915 #10	ENSOMYG00000000059 #10	hipk3a (ENSOMYG00000000267) ##12	tcp11l1 (ENSOMYG00000000327) #14	wt-t1a (ENSOMYG00000000386) #20	pax6a (ENSOMYG00000000804) #22	ENSOMYG00000001017	ENSOMYG00000001021	ENSOMYG00000001049 ##27	ENSOMYG00000002216	ENSOMYG00000002727	ENSOMYG00000002781	ENSOMYG00000003221	ENSOMYG00000004239	ENSOMYG00000007827	ENSOMYG00000014559	ENSOMYG00000063722	ENSOMYG00000014586	ENSOMYG00000014599	ENSOMYG00000062053	ENSOMYG00000014603
Salmo	ANCESTRAL SPECIES	65															ENSGT00940000156734.a.d #20	ENSGT00940000155391.a.b.a.a #22	ENSGT00990000213553	ENSGT00970000197520	ENSGT00390000007681.b.a.a.t.b ##27	ENSGT00940000155663.f.a.c	ENSGT00950000183093.B.b.c	ENSGT00390000003145.t	ENSGT00950000183011.c.a.b.f.c	ENSGT00940000162514	ENSGT00940000156003.l.a.q	ENSGT00390000010382.d	ENSGT00940000160513.b.a	ENSGT00550000075044.c.a	ENSGT00940000156482.c.h	ENSGT00940000156131.a.a.e	ENSGT00940000156469.a.a
River trout	MODERN SPECIES	8	bmal1a (ENSSTUG00000014773)	RASSF10 (ENSSTUG00000016079)	tead1a (ENSSTUG00000016101)	PARVA (ENSSTUG00000016399)	mical2b (ENSSTUG00000016752)	far1 (ENSSTUG00000016897)	cyb5r2 (ENSSTUG00000017388)	sb:cb470 (ENSSTUG00000017410)	PPFIBP2 (ENSSTUG00000017433)	syt9b (ENSSTUG00000017672)	ENSSTUG00000017680	spon1b (ENSSTUG00000017713)	ENSSTUG00000018447 #10	hipk3a (ENSSTUG00000018504) ##12	wt1a (ENSSTUG00000020303) #20	pax6a (ENSSTUG00000020447) #22	ENSSTUG00000022479	ENSSTUG00000022499	ENSSTUG00000022501	mpped2 (ENSSTUG00000022517) ##27	NAV2 (ENSSTUG00000022582)	dbx1b (ENSSTUG00000023293)	ENSSTUG00000023303	rnf141 (ENSSTUG00000023307)	AMPD3 (ENSSTUG00000023365)	lamb4 (ENSSTUG00000025200)	lamb1a (ENSSTUG00000025697)	bmt2 (ENSSTUG00000033838)	immp2l (ENSSTUG00000033854)	LRRN3 (ENSSTUG00000033874)	amfra (ENSSTUG00000033901)
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000107156	BTBD10 (ENSSSAG00000059382)	ENSSSAG00000101052	ENSSSAG00000066737	facr1 (ENSSSAG00000054319)	cyb5r2 (ENSSSAG00000054290)	sb:cb470 (ENSSSAG00000054287)	PPFIBP2 (ENSSSAG00000043522)	syt9b (ENSSSAG00000043180)	spon1b (ENSSSAG00000042254)	ENSSSAG00000091406 #10	hipk3a (ENSSSAG00000040541) ##12	ENSSSAG00000089464	tcp11l1 (ENSSSAG00000039947) #14	wt1 (ENSSSAG00000039650) #20	pax6a (ENSSSAG00000075546) #22	ENSSSAG00000075493	ENSSSAG00000075484	ENSSSAG00000075471 ##27	ENSSSAG00000075370	ENSSSAG00000075353	ENSSSAG00000092085	ENSSSAG00000120486	ampd3 (ENSSSAG00000074381)	ENSSSAG00000113909	ENSSSAG00000118686	ENSSSAG00000096633	ENSSSAG00000106537	ENSSSAG00000048641	ENSSSAG00000102267	ENSSSAG00000106237
Salmoninae	ANCESTRAL SPECIES	711								ENSGT00940000155948.b.b.c	ENSGT00940000154910.b.a.c	ENSGT00530000063472.b.b.a.b.a.b.c.a.a #10	ENSGT00940000155960.a.a.a ##12	ENSGT00940000157402.i #14	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a.c #20	ENSGT00940000155391.a.b.a.b #22	ENSGT00390000005430.u #25	ENSGT00390000007681.b.a.a.t.a ##27	ENSGT00940000155663.f.a.d
Huchen	MODERN SPECIES	98	ENSHHUG00000006198	ENSHHUG00000006184	sb:cb470 (ENSHHUG00000006171)	PPFIBP2 (ENSHHUG00000006154)	OLFML1 (ENSHHUG00000006150)	syt9b (ENSHHUG00000006123)	spon1b (ENSHHUG00000006059)	ENSHHUG00000006054	ENSHHUG00000006044 #10	ENSHHUG00000006037 #10	ENSHHUG00000005994 ##12	tcp11l1 (ENSHHUG00000005976) #14	DEPDC7 (ENSHHUG00000005974) #15	ENSHHUG00000005958 #18	wt1a (ENSHHUG00000005719) #20	pax6a (ENSHHUG00000005623) #22	dnajc24 (ENSHHUG00000005607) #25	ENSHHUG00000005605	ENSHHUG00000005599	mpped2 (ENSHHUG00000005559) ##27	ENSHHUG00000005215	NAV2 (ENSHHUG00000004860)
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00950000182839.A.d.a.a.d	ENSGT00950000182956.b.b.a.a.c.b.e	ENSGT00950000183194.a.b.e.b.b	ENSGT00940000158780.e.c	ENSGT00390000006367.d.e	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a.g.a.a	ENSGT00940000155948.b.b.c	ENSGT00940000154910.b.a.c	ENSGT00530000063472.b.b.a.b.a.b.c.a.a #10	ENSGT00940000155960.a.a.a ##12	ENSGT00940000157402.i #14	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a.c #20	ENSGT00940000155391.a.b.a.b #22	ENSGT00390000005430.u #25	ENSGT00390000007681.b.a.a.t.a ##27	ENSGT00940000155663.f.a.d	ENSGT00950000183093.B.b.d	ENSGT00390000003145.s	ENSGT00950000183011.c.a.b.f.d	ENSGT00950000182774.b.b.b	ENSGT00940000156003.l.a.r	ENSGT00390000010382.c	ENSGT00390000005941.d	ENSGT00390000010852	ENSGT00550000075044.c.b	ENSGT00940000164174	ENSGT00940000160513.b.b	ENSGT00940000156482.c
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00940000158780.e.d	ENSGT00390000000221.A.d	ENSGT00390000006367.d.f	ENSGT01010000222294.c.b.b.b.c.a.a.a.a.b	ENSGT00940000157791	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a.b	ENSGT00940000160055	ENSGT00940000155948.b.b.d	ENSGT00940000154910.b.a.d	ENSGT00530000063472.b.b.a.b.a.b.c.a.b #10	ENSGT00940000155960.a.a.b ##12	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a.c #20	ENSGT00940000155391.a.b.a.b #22	ENSGT00390000005430.u #25	ENSGT00390000007681.b.a.a.t.a ##27	ENSGT00940000155663.f.a.d	ENSGT00950000183093.B.b.d	ENSGT00390000003145.s	ENSGT00950000183011.c.a.b.f.d	ENSGT00950000182774.b.b.b	ENSGT00940000156003.l.a.r	ENSGT00390000010382.c	ENSGT00390000005941.d	ENSGT00390000010852	ENSGT00940000164174	ENSGT00940000160513.b.b	ENSGT00940000156482.c	ENSGT00940000156131.a.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000158780.e.d	ENSGT00390000000221.A.d	ENSGT00390000006367.d.f	ENSGT01010000222294.c.b.b.b.c.a.a.a.a.b	ENSGT00940000157791	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a.b	ENSGT00940000160055	ENSGT00940000155948.b.b.d	ENSGT00940000154910.b.a.d	ENSGT00530000063472.b.b.a.b.a.b.c.a.b #10	ENSGT00940000155960.a.a.b ##12	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a.c #20	ENSGT00940000155391.a.b.a.b #22	ENSGT00390000005430.u #25	ENSGT00390000007681.b.a.a.t.a ##27	ENSGT00940000155663.f.a.d	ENSGT00950000183093.B.b.d	ENSGT00390000003145.s	ENSGT00950000183011.c.a.b.f.d	ENSGT00950000182774.b.b.b	ENSGT00940000156003.l.a.r	ENSGT00390000010382.c	ENSGT00390000005941.d	ENSGT00390000010852	ENSGT00940000164174	ENSGT00940000160513.b.b	ENSGT00940000156482.c	ENSGT00940000156131.a.a.f
Chinook salmon	MODERN SPECIES	3042															gas1a (ENSOTSG00005035799)	pax6a (ENSOTSG00005035822) #22
Coho salmon	MODERN SPECIES	14	mical2b (ENSOKIG00005020706)	dkk3b (ENSOKIG00005020788)	FAR1 (ENSOKIG00005020812)	ENSOKIG00005020869	OVCH2 (ENSOKIG00005020877)	sb:cb470 (ENSOKIG00005020919)	PPFIBP2 (ENSOKIG00005017642)	OLFML1 (ENSOKIG00005017776)	syt9b (ENSOKIG00005017782)	spon1b (ENSOKIG00005017828)	ENSOKIG00005018215 #10	hipk3a (ENSOKIG00005018233) ##12	DEPDC7 (ENSOKIG00005018270) #15	ENSOKIG00005018279 #18	wt1a (ENSOKIG00005018290) #20	pax6a (ENSOKIG00005018556) #22	dnajc24 (ENSOKIG00005020188) #25	mpped2 (ENSOKIG00005020205) ##27	NAV2 (ENSOKIG00005020538)	ENSOKIG00005025280	dbx1b (ENSOKIG00005025291)	AMPD3 (ENSOKIG00005025479)	rnf141 (ENSOKIG00005028186)	ENSOKIG00005028196	LAMB1 (ENSOKIG00005028611)	bmt2 (ENSOKIG00005036356)	TMEM168 (ENSOKIG00005036370)	znf277 (ENSOKIG00005036447)	ENSOKIG00005037513	ENSOKIG00005037540	ENSOKIG00005037550
Rainbow trout	MODERN SPECIES	11	mical2b (ENSOMYG00000023356)	dkk3b (ENSOMYG00000023503)	ENSOMYG00000023586	ENSOMYG00000063151	OVCH2 (ENSOMYG00000074535)	sb:cb470 (ENSOMYG00000023706)	PPFIBP2 (ENSOMYG00000000430)	ENSOMYG00000070334	OLFML1 (ENSOMYG00000000519)	syt9b (ENSOMYG00000000528)	spon1b (ENSOMYG00000000797)	hipk3a (ENSOMYG00000000928) ##12	ENSOMYG00000000939 #15	ENSOMYG00000000969 #18	wt-t1b (ENSOMYG00000000994) #20	pax6a (ENSOMYG00000001171) #22	dnajc24 (ENSOMYG00000001335) #25	ENSOMYG00000074028	ENSOMYG00000058278	ENSOMYG00000001368 ##27	ENSOMYG00000002919	ENSOMYG00000004404	ENSOMYG00000004918	ENSOMYG00000004751	ENSOMYG00000004933	ENSOMYG00000005620	bmt2 (ENSOMYG00000006000)	TMEM168 (ENSOMYG00000006022)	znf277 (ENSOMYG00000006558)	ENSOMYG00000006825	ENSOMYG00000006835
Salmo	ANCESTRAL SPECIES	45	ENSGT00950000182956.b.b.a.a.c.b.e	ENSGT00950000183194.a.b.e.b.b	ENSGT00940000158780.e.c	ENSGT00390000006367.d.e	ENSGT00940000153962.a.g	ENSGT00940000171216.a	ENSGT01050000244951.a.b.a.a.g.a.a	ENSGT00940000155948.b.b.c	ENSGT00940000154910.b.a.c	ENSGT00530000063472.b.b.a.b.a.b.c.a.a #10	ENSGT00940000155960.a.a.a ##12	ENSGT00940000157402.i #14	ENSGT00950000182976.a.b.c #15	ENSGT00390000013482 #18	ENSGT00940000156734.a.c #20	ENSGT00940000155391.a.b.a.b #22	ENSGT00390000005430.u #25	ENSGT00390000007681.b.a.a.t.a ##27	ENSGT00940000155663.f.a.d	ENSGT00950000183093.B.b.d	ENSGT00390000003145.s	ENSGT00950000183011.c.a.b.f.d	ENSGT00950000182774.b.b.b	ENSGT00940000156003.l.a.r	ENSGT00390000010382.c	ENSGT00390000005941.d	ENSGT00390000010852	ENSGT00550000075044.c.b	ENSGT00940000160513.b.b	ENSGT00940000156482.c.g	ENSGT00940000156131.a.a.f
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000121118	ENSSSAG00000004139	PPFIBP2 (ENSSSAG00000004197)	ENSSSAG00000004335	SYT9 (ENSSSAG00000004346)	spon1b (ENSSSAG00000004443)	ENSSSAG00000097022	ENSSSAG00000112473	ENSSSAG00000118663	ENSSSAG00000085242	ENSSSAG00000042123 #10	hipk3a (ENSSSAG00000004843) ##12	depdc7 (ENSSSAG00000004865) #15	ENSSSAG00000004891 #18	wt1a (ENSSSAG00000004932) #20	pax6a (ENSSSAG00000005278) #22	dnajc24 (ENSSSAG00000008492) #25	mpped2 (ENSSSAG00000008501) ##27	ENSSSAG00000008692	ENSSSAG00000103869	ENSSSAG00000111352	ENSSSAG00000039669	ENSSSAG00000117326	ENSSSAG00000047819	ENSSSAG00000103236	ENSSSAG00000094080	ENSSSAG00000095349	ENSSSAG00000107694	ENSSSAG00000111823	ENSSSAG00000068297	bmt2 (ENSSSAG00000121522)
River trout	MODERN SPECIES	37	far1 (ENSSTUG00000012662)	ENSSTUG00000012691	OVCH2 (ENSSTUG00000012699)	cyb5r2 (ENSSTUG00000012710)	sb:cb470 (ENSSTUG00000012791)	PPFIBP2 (ENSSTUG00000012854)	OLFML1 (ENSSTUG00000014143)	syt9b (ENSSTUG00000014163)	spon1b (ENSSTUG00000014205)	ENSSTUG00000015069 #10	hipk3a (ENSSTUG00000015074) ##12	tcp11l1 (ENSSTUG00000015124) #14	DEPDC7 (ENSSTUG00000015176) #15	ENSSTUG00000015195 #18	wt1a (ENSSTUG00000015216) #20	pax6a (ENSSTUG00000015309) #22	dnajc24 (ENSSTUG00000016925) #25	mpped2 (ENSSTUG00000016936) ##27	NAV2 (ENSSTUG00000017089)	dbx1b (ENSSTUG00000021000)	rnf141 (ENSSTUG00000021007)	AMPD3 (ENSSTUG00000021067)	ENSSTUG00000023676	lamb1a (ENSSTUG00000023755)	ENSSTUG00000026124	bmt2 (ENSSTUG00000026133)	TMEM168 (ENSSTUG00000026146)	znf277 (ENSSTUG00000026168)	ENSSTUG00000026527	LRRN3 (ENSSTUG00000026556)	amfra (ENSSTUG00000026580)
Northern pike	MODERN SPECIES	18	dkk3b (ENSELUG00000015598)	far1 (ENSELUG00000015674)	OVCH2 (ENSELUG00000015748)	cyb5r2 (ENSELUG00000015781)	sb:cb470 (ENSELUG00000033296)	PPFIBP2 (ENSELUG00000015986)	OLFML1 (ENSELUG00000016079)	syt9b (ENSELUG00000016099)	spon1b (ENSELUG00000001480)	ENSELUG00000016214	hipk3a (ENSELUG00000016322) ##12	tcp11l1 (ENSELUG00000016354) #14	DEPDC7 (ENSELUG00000016369) #15	ENSELUG00000016429 #18	wt1a (ENSELUG00000016479) #20	pax6a (ENSELUG00000016565) #22	ENSELUG00000025495	ENSELUG00000025201	dnajc24 (ENSELUG00000016623) #25	mpped2 (ENSELUG00000016653) ##27	NAV2 (ENSELUG00000016740)	dbx1b (ENSELUG00000016773)	rnf141 (ENSELUG00000016802)	AMPD3 (ENSELUG00000016872)	lamb4 (ENSELUG00000016958)	lamb1a (ENSELUG00000017039)	bmt2 (ENSELUG00000017078)	TMEM168 (ENSELUG00000017110)	ENSELUG00000026447	znf277 (ENSELUG00000017157)	LRRN3 (ENSELUG00000024807)
Otomorpha	ANCESTRAL SPECIES	270	ENSGT00940000163017	ENSGT00530000063702.a.b	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00950000182976.a.b.c #15	ENSGT01060000248747.b	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00940000155663.f.a	ENSGT00950000183093.B.b
Otophysi	ANCESTRAL SPECIES	19	ENSGT00940000158780.e	ENSGT00390000000221.A.d	ENSGT00390000006367.d	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT01030000234613.a.b	ENSGT00940000156879	ENSGT00390000011417	ENSGT00390000009328	ENSGT00950000183100.A	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361	ENSGT00730000111007.a.b	ENSGT00940000165480.b	ENSGT00940000157530.b.a	ENSGT00940000157530.b.b	ENSGT00390000013899.b
Cyprinoidei	ANCESTRAL SPECIES	75	ENSGT00940000158780.e	ENSGT00390000000221.A.d	ENSGT00390000006367.d.d	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT00940000160055	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a.b	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a.h.a ##12	ENSGT00940000157402 #14	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	213						ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a.m	ENSGT00940000160055.b	ENSGT00940000155948.b.b.b	ENSGT00940000154910.b.a.b.a	ENSGT00530000063472.b.b.a.b.a.b.a #10	ENSGT00940000155960.a.h.a.a ##12	ENSGT00940000157402.g #14	ENSGT00390000013482 #18	ENSGT00940000156734.a.a #20	ENSGT00940000155391.a.b.a.c #22	ENSGT00390000005430.o #25	ENSGT00390000007681.b.a.a.n.a ##27	ENSGT00940000155663.f.a.a	ENSGT00950000183093.B.b.a	ENSGT01030000234613.a.b.f	ENSGT00940000156879.i.a.a	ENSGT00390000011417.a	ENSGT00390000009328.e	ENSGT00950000183100.A.h	ENSGT00940000153561.b.a.a.b.t.b.a.a	ENSGT00940000164361.g.a	ENSGT00940000165480.b.a	ENSGT00390000013899.b.f	ENSGT00940000161262.a.b	ENSGT00940000159073.c
Cyprininae_a	ANCESTRAL SPECIES	234							ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a.m	ENSGT00940000160055.b	ENSGT00940000155948.b.b.b	ENSGT00940000154910.b.a.b.a	ENSGT00530000063472.b.b.a.b.a.b.a #10	ENSGT00940000155960.a.h.a.a ##12	ENSGT00940000157402.g #14	ENSGT00940000156734.a.a #20	ENSGT00940000155391.a.b.a.c #22	ENSGT00390000005430.o #25	ENSGT00390000007681.b.a.a.n.a ##27	ENSGT00940000155663.f.a.a	ENSGT00950000183093.B.b.a	ENSGT01030000234613.a.b.f	ENSGT00940000156879.i.b	ENSGT00390000011417.a	ENSGT00390000009328.e	ENSGT00950000183100.A.h	ENSGT00940000153561.b.a.a.b.t.b.a.a	ENSGT00940000153561.b.a.a.b.t.b.b	ENSGT00940000164361.g.a	ENSGT00940000165480.b.a	ENSGT00390000013899.b.f	ENSGT00940000161262.a.b
Common carp reference	MODERN SPECIES	37	tead1a (ENSCCRG00000025026)	parvaa (ENSCCRG00000019915)	mical2b (ENSCCRG00000019308)	dkk3b (ENSCCRG00000019357)	OVCH2 (ENSCCRG00000019293)	far1 (ENSCCRG00000071600)	cyb5r2 (ENSCCRG00000019245)	PPFIBP2 (ENSCCRG00000073269)	syt9b (ENSCCRG00000017705)	ENSCCRG00000024627	ENSCCRG00000062174 #10	hipk3a (ENSCCRG00000030750) ##12	ENSCCRG00000053009 #18	tcp11l1 (ENSCCRG00000030852) #14	wt1a (ENSCCRG00000030964) #20	pax6a (ENSCCRG00000019106) #22	dnajc24 (ENSCCRG00000071070) #25	mpped2 (ENSCCRG00000066005) ##27	ENSCCRG00000064442	ENSCCRG00000030728	dbx1b (ENSCCRG00000030714)	exoc3l1 (ENSCCRG00000006561)	prmt7 (ENSCCRG00000006642)	ciapin1 (ENSCCRG00000009324)	coq9 (ENSCCRG00000062261)	polr2c (ENSCCRG00000009384)	shank2b (ENSCCRG00000009423)	acte1 (ENSCCRG00000032675)	guca1g (ENSCCRG00000032639)	zgc:101566 (ENSCCRG00000081489)	chst1 (ENSCCRG00000074409)
Golden-line barbel	MODERN SPECIES	29	tead1a (ENSSGRG00000036625)	parvaa (ENSSGRG00000036461)	mical2b (ENSSGRG00000036440)	dkk3b (ENSSGRG00000036437)	far1 (ENSSGRG00000036314)	OVCH2 (ENSSGRG00000036308)	cyb5r2 (ENSSGRG00000036171)	sb:cb470 (ENSSGRG00000036167)	PPFIBP2 (ENSSGRG00000034114)	OLFML1 (ENSSGRG00000034052)	syt9b (ENSSGRG00000034049)	ENSSGRG00000033896	hipk3a (ENSSGRG00000033094) ##12	tcp11l1 (ENSSGRG00000033066) #14	wt1a (ENSSGRG00000033056) #20	pax6a (ENSSGRG00000032472) #22	dnajc24 (ENSSGRG00000032441) #25	mpped2 (ENSSGRG00000032437) ##27	NAV2 (ENSSGRG00000032414)	dbx1b (ENSSGRG00000032412)	exoc3l1 (ENSSGRG00000032411)	prmt7 (ENSSGRG00000032396)	ciapin1 (ENSSGRG00000032367)	coq9 (ENSSGRG00000032330)	polr2c (ENSSGRG00000032329)	shank2b (ENSSGRG00000032305)	acte1 (ENSSGRG00000030299)	guca1g (ENSSGRG00000030262)	zgc:101566 (ENSSGRG00000030260)	chst1 (ENSSGRG00000030259)	cry2 (ENSSGRG00000030166)
Goldfish	MODERN SPECIES	17	klhdc4 (ENSCARG00000003955)	jph3b (ENSCARG00000003913)	ENSCARG00000018128	map1lc3b (ENSCARG00000018110)	det1 (ENSCARG00000018094)	map1lc3b (ENSCARG00000018081)	ENSCARG00000018072	septin15 (ENSCARG00000017656)	ENSCARG00000017631	ENSCARG00000017626	uba2 (ENSCARG00000017501)	hipk3a (ENSCARG00000017482) ##12	ENSCARG00000017469 #14	ENSCARG00000017456 #18	wt1a (ENSCARG00000016998) #20	pax6a (ENSCARG00000014982) #22	dnajc24 (ENSCARG00000014905) #25	mpped2 (ENSCARG00000014895) ##27	dbx1b (ENSCARG00000014785)	zgc:77158 (ENSCARG00000014780)	fgf6a (ENSCARG00000014771)	tigara (ENSCARG00000014766)	ccnd2a (ENSCARG00000014746)	ENSCARG00000014742	ENSCARG00000014618	syt9b (ENSCARG00000014596)	OLFML1 (ENSCARG00000014592)	PPFIBP2 (ENSCARG00000014478)	sb:cb470 (ENSCARG00000014460)	cyb5r2 (ENSCARG00000014359)	far1 (ENSCARG00000014292)
Cyprininae	ANCESTRAL SPECIES	108	ENSGT00950000182956.b.b.a.a.c.b.c	ENSGT00950000183194.a.b.f.h	ENSGT00940000158780.e.a	ENSGT00390000000221.A.d.b	ENSGT00390000006367.d.d.a	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a.g.a.n	ENSGT00940000160055.a	ENSGT00940000155948.b.b.a	ENSGT00940000154910.b.a.b.b	ENSGT00530000063472.b.b.a.b.a.b.b #10	ENSGT00940000155960.a.h.a.b ##12	ENSGT00940000157402.h #14	ENSGT00940000156734.a.b #20	ENSGT00940000155391.a.b.a.d #22	ENSGT00390000005430.p #25	ENSGT00390000007681.b.a.a.n.b ##27
Cyprininae_a	ANCESTRAL SPECIES	73	ENSGT00950000182956.b.b.a.a.c.b.c	ENSGT00950000183194.a.b.f.h	ENSGT00940000158780.e.a	ENSGT00390000000221.A.d.b	ENSGT00390000006367.d.d.a	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT01050000244951.a.b.a.a.g.a.n	ENSGT00940000160055.a	ENSGT00940000155948.b.b.a	ENSGT00940000154910.b.a.b.b	ENSGT00530000063472.b.b.a.b.a.b.b #10	ENSGT00940000155960.a.h.a.b ##12	ENSGT00940000157402.h #14	ENSGT00940000156734.a.b #20	ENSGT00940000155391.a.b.a.d #22	ENSGT00390000005430.p #25	ENSGT00390000007681.b.a.a.n.b ##27	ENSGT00940000155663.f.a.b	ENSGT00950000183093.B.b.b	ENSGT01030000234613.a.b.e	ENSGT00940000156879.j	ENSGT00390000011417.b	ENSGT00390000009328.f	ENSGT00950000183100.A.g	ENSGT00940000153561.b.a.a.b.t.a	ENSGT00940000164361.g.b	ENSGT00940000165480.b.b	ENSGT00390000013899.b.e	ENSGT00940000161262.a.a	ENSGT00940000159073.d
Common carp reference	MODERN SPECIES	33	ENSCCRG00000051923	ENSCCRG00000073447	tead1a (ENSCCRG00000021555)	mical2b (ENSCCRG00000019365)	ENSCCRG00000019298	far1 (ENSCCRG00000017127)	ENSCCRG00000065098	ENSCCRG00000019349	PPFIBP2 (ENSCCRG00000017729)	ENSCCRG00000019324	SYT9 (ENSCCRG00000045376)	ENSCCRG00000045409	hipk3a (ENSCCRG00000063748) ##12	tcp11l1 (ENSCCRG00000049958) #14	wt1a (ENSCCRG00000049820) #20	pax6a (ENSCCRG00000019228) #22	dnajc24 (ENSCCRG00000078518) #25	mpped2 (ENSCCRG00000070175) ##27	ENSCCRG00000038850	dbx1b (ENSCCRG00000061310)	exoc3l1 (ENSCCRG00000066343)	prmt7 (ENSCCRG00000030960)	ciapin1 (ENSCCRG00000031179)	coq9 (ENSCCRG00000009358)	polr2c (ENSCCRG00000079644)	shank2b (ENSCCRG00000038807)	acte1 (ENSCCRG00000037131)	guca1g (ENSCCRG00000082055)	zgc:101566 (ENSCCRG00000068295)	chst1 (ENSCCRG00000066553)	chst1 (ENSCCRG00000068173)
Golden-line barbel	MODERN SPECIES	112		mical2b (ENSSGRG00000037529)	dkk3b (ENSSGRG00000037730)	far1 (ENSSGRG00000037731)	ENSSGRG00000037744	cyb5r2 (ENSSGRG00000037745)	ppfibp2b (ENSSGRG00000037750)	OLFML1 (ENSSGRG00000037751)	syt9b (ENSSGRG00000037752)	ENSSGRG00000037753	ENSSGRG00000037758	ENSSGRG00000038172 #10	hipk3a (ENSSGRG00000038184) ##12	tcp11l1 (ENSSGRG00000038564) #14	wt1a (ENSSGRG00000038568) #20	pax6a (ENSSGRG00000038637) #22	dnajc24 (ENSSGRG00000038834) #25	mpped2 (ENSSGRG00000038836) ##27	NAV2 (ENSSGRG00000038951)	dbx1b (ENSSGRG00000040290)	exoc3l1 (ENSSGRG00000040291)	prmt7 (ENSSGRG00000040294)	shank2b (ENSSGRG00000040493)	acte1 (ENSSGRG00000040581)	guca1g (ENSSGRG00000043160)	zgc:101566 (ENSSGRG00000043162)	chst1 (ENSSGRG00000043163)	cry2 (ENSSGRG00000043164)	mapk8ip1a (ENSSGRG00000043165)	cstpp1 (ENSSGRG00000043173)	ckap5 (ENSSGRG00000043177)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1113														ENSCARG00000064589 #14	wt1a (ENSCARG00000064314) #20	pax6a (ENSCARG00000061768) #22	dnajc24 (ENSCARG00000061621) #25	mpped2 (ENSCARG00000061550) ##27
Goldfish	MODERN SPECIES	339																pax6a (ENSCARG00000047370) #22
Zebrafish	MODERN SPECIES	17	ENSDARG00000102823	cyb5r2 (ENSDARG00000051925)	sb:cb470 (ENSDARG00000111983)	ppfibp2b (ENSDARG00000029168)	syt9b (ENSDARG00000029239)	spon1b (ENSDARG00000023694)	ENSDARG00000111173	ENSDARG00000091890	ENSDARG00000113513	ENSDARG00000073947	ENSDARG00000062477 #10	hipk3a (ENSDARG00000062469) ##12	tcp11l1 (ENSDARG00000031890) #14	ENSDARG00000093805 #18	wt1a (ENSDARG00000031420) #20	pax6a (ENSDARG00000103379) #22	dnajc24 (ENSDARG00000023927) #25	mpped2 (ENSDARG00000034443) ##27	NAV2 (ENSDARG00000001879)	dbx1b (ENSDARG00000001859)	exoc3l1 (ENSDARG00000051899)	prmt7 (ENSDARG00000051902)	ciapin1 (ENSDARG00000045733)	coq9 (ENSDARG00000023583)	polr2c (ENSDARG00000033596)	shank2b (ENSDARG00000062325)	guca1g (ENSDARG00000045737)	acte1 (ENSDARG00000079111)	zgc:101566 (ENSDARG00000086342)	chst1 (ENSDARG00000088593)	cry2 (ENSDARG00000102403)
Characiphysae	ANCESTRAL SPECIES	44	ENSGT00940000158780.e	ENSGT00390000000221.A.d	ENSGT00390000006367.d.b	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00940000155663.f.a	ENSGT00950000183093.B.b	ENSGT01030000234613.a.b	ENSGT00940000156879	ENSGT00390000011417	ENSGT00390000009328	ENSGT00950000183100.A	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361.c	ENSGT00940000165480.b	ENSGT00940000157530.b.a	ENSGT00940000157530.b.b
Channel catfish	MODERN SPECIES	27	dkk3b (ENSIPUG00000010819)	far2 (ENSIPUG00000010783)	ENSIPUG00000010744	cyb5r2 (ENSIPUG00000010723)	sb:cb470 (ENSIPUG00000010716)	PPFIBP2 (ENSIPUG00000010585)	olfml1 (ENSIPUG00000010566)	SYT9 (ENSIPUG00000010536)	SPON1 (ENSIPUG00000010421)	ENSIPUG00000010395	ENSIPUG00000010342 #10	hipk3 (ENSIPUG00000010307) ##12	tcp11l1 (ENSIPUG00000010295) #14	ccdc73 (ENSIPUG00000010277) #18	wt1 (ENSIPUG00000010239) #20	pax6 (ENSIPUG00000010089) #22	dnajc24 (ENSIPUG00000010058) #25	ENSIPUG00000010039	MPPED2 (ENSIPUG00000009995) ##27	NAV2 (ENSIPUG00000009687)	dbx1b (ENSIPUG00000009557)	exoc3l1 (ENSIPUG00000009486)	prmt7 (ENSIPUG00000009390)	ciapin1 (ENSIPUG00000009290)	coq9 (ENSIPUG00000009245)	polr2c (ENSIPUG00000009231)	shank2b (ENSIPUG00000009192)	acte1 (ENSIPUG00000009130)	zgc:101566 (ENSIPUG00000009110)	chst1 (ENSIPUG00000009099)	cry2 (ENSIPUG00000009030)
Characiphysae_b	ANCESTRAL SPECIES	62	ENSGT00940000158780.e	ENSGT00390000000221.A.d	ENSGT00390000006367.d.b	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00940000155663.f.a	ENSGT00950000183093.B.a.a	ENSGT00950000183093.B.b	ENSGT01030000234613.a.b	ENSGT00940000156879	ENSGT00390000011417	ENSGT00390000009328	ENSGT00950000183100.A	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b	ENSGT00940000164361.c	ENSGT00940000165480.b	ENSGT00940000157530.b.a
Electric eel	MODERN SPECIES	517											ENSEEEG00000007278	ENSEEEG00000007275 #10	hipk3a (ENSEEEG00000007274) ##12	tcp11l1 (ENSEEEG00000007269) #14	wt1a (ENSEEEG00000007256) #20	pax6a (ENSEEEG00000007225) #22	dnajc24 (ENSEEEG00000007220) #25
Characoidei	ANCESTRAL SPECIES	129	ENSGT00940000158780.e	ENSGT00390000000221.A.d	ENSGT00390000006367.d.b	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00390000013482 #18	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00390000007681.b.a.a ##27	ENSGT00940000155663.f.a	ENSGT00950000183093.B.a.a	ENSGT01030000234613.a.b	ENSGT00940000156879	ENSGT00390000011417	ENSGT00390000009328	ENSGT00950000183100.A
Red-bellied piranha	MODERN SPECIES	549																pax6a (ENSPNAG00000023770) #22	dnajc24 (ENSPNAG00000005339) #25	ENSPNAG00000003789
Mexicana tetra	MODERN SPECIES	16	dkk3b (ENSAMXG00000034093)	far1 (ENSAMXG00000013060)	ENSAMXG00000035837	cyb5r2 (ENSAMXG00000013056)	sb:cb470 (ENSAMXG00000040501)	ENSAMXG00000013041	ppfibp2b (ENSAMXG00000029892)	OLFML1 (ENSAMXG00000028279)	syt9b (ENSAMXG00000013035)	spon1b (ENSAMXG00000013029)	ENSAMXG00000013026 #10	hipk3a (ENSAMXG00000013024) ##12	tcp11l1 (ENSAMXG00000013021) #14	ENSAMXG00000013019 #18	wt1a (ENSAMXG00000039834) #20	pax6a (ENSAMXG00000013008) #22	dnajc24 (ENSAMXG00000030900) #25	mpped2 (ENSAMXG00000001248) ##27	NAV2 (ENSAMXG00000012935)	DBX1 (ENSAMXG00000039570)	exoc3l1 (ENSAMXG00000012894)	prmt7 (ENSAMXG00000012862)	ciapin1 (ENSAMXG00000012839)	coq9 (ENSAMXG00000012821)	polr2c (ENSAMXG00000012805)	shank2b (ENSAMXG00000012762)	acte1 (ENSAMXG00000001148)	guca1g (ENSAMXG00000033079)	zgc:101566 (ENSAMXG00000026280)	dnai7 (ENSAMXG00000032132)	chst1 (ENSAMXG00000026281)
Clupeiformes	ANCESTRAL SPECIES	108	ENSGT00390000000221.A.d	ENSGT00390000006367.d	ENSGT00940000157791	ENSGT00940000153962.a	ENSGT00940000171216	ENSGT01050000244951.a.b.a.a.g.a	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000154910.b.a	ENSGT00530000063472.b.b.a.b.a.b #10	ENSGT00940000155960.a ##12	ENSGT00940000157402 #14	ENSGT00950000182976.a.b.c #15	ENSGT01060000248747.b	ENSGT00940000156734.a #20	ENSGT00940000155391.a.b.a #22	ENSGT00390000005430 #25	ENSGT00940000163542
Denticle herring	MODERN SPECIES	8						ENSDCDG00000024075	spon1b (ENSDCDG00000024049)	ENSDCDG00000024044	ENSDCDG00000024041 #10	hipk3a (ENSDCDG00000023446) ##12	tcp11l1 (ENSDCDG00000023418) #14	ENSDCDG00000023415	DEPDC7 (ENSDCDG00000023414) #15	ENSDCDG00000023413	wt1a (ENSDCDG00000023390) #20	pax6a (ENSDCDG00000023364) #22	ENSDCDG00000023357	dnajc24 (ENSDCDG00000023356) #25	mpped2 (ENSDCDG00000023339) ##27	ENSDCDG00000023337	ENSDCDG00000023333	KLHL25 (ENSDCDG00000023331)	ENSDCDG00000023320	ENSDCDG00000023315	ntrk3a (ENSDCDG00000023312)	ENSDCDG00000023308	ntrk3a (ENSDCDG00000023260)	det1 (ENSDCDG00000023247)	fa2h (ENSDCDG00000023244)	ccdc113 (ENSDCDG00000023239)	ZNF319 (ENSDCDG00000023237)
Atlantic herring	MODERN SPECIES	19	parvaa (ENSCHAG00000026128)	mical2b (ENSCHAG00000026253)	dkk3b (ENSCHAG00000026303)	far1 (ENSCHAG00000026306)	OVCH2 (ENSCHAG00000026316)	cyb5r2 (ENSCHAG00000026326)	PPFIBP2 (ENSCHAG00000026362)	OLFML1 (ENSCHAG00000026424)	syt9b (ENSCHAG00000026428)	spon1b (ENSCHAG00000026448)	ENSCHAG00000026527 #10	hipk3a (ENSCHAG00000026538) ##12	tcp11l1 (ENSCHAG00000026586) #14	DEPDC7 (ENSCHAG00000026603) #15	wt1a (ENSCHAG00000026615) #20	pax6a (ENSCHAG00000026679) #22	dnajc24 (ENSCHAG00000026992) #25	ENSCHAG00000000132	mpped2 (ENSCHAG00000000165) ##27	PTPRB (ENSCHAG00000000796)	LGR5 (ENSCHAG00000003994)	ENSCHAG00000004609	ENSCHAG00000004648	znf276 (ENSCHAG00000004681)	ENSCHAG00000004707	slc10a3 (ENSCHAG00000004809)	chmp1a (ENSCHAG00000004816)	cdk10 (ENSCHAG00000004886)	vps4a (ENSCHAG00000005324)	SNTB2 (ENSCHAG00000005775)	spire2 (ENSCHAG00000005788)
Osteoglossocephalai	ANCESTRAL SPECIES	81	ENSGT00940000160055	ENSGT00940000155948.b.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00940000157402 #14	ENSGT00950000182976.a.b #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT01060000248747	ENSGT00390000004456 #19	ENSGT00940000156734 #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000005430 #25	ENSGT00940000163542	ENSGT00940000164122.a.a	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663	ENSGT00950000183093.B	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00390000014757
Clupeocephala	ANCESTRAL SPECIES	16	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00390000014757	ENSGT00940000158287	ENSGT00940000157089.B
Otomorpha	ANCESTRAL SPECIES	6	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b	ENSGT00940000154146.b.a	ENSGT00950000182940.b.a.a.g.b	ENSGT00530000063712.a.a.o.b	ENSGT00530000063712.a.a.o.a	ENSGT00940000164605.e	ENSGT00940000154876.a.a.a.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.g	ENSGT00940000156291.e	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00390000014757	ENSGT00940000158287	ENSGT00940000157089.B
Clupeiformes	ANCESTRAL SPECIES	60	ENSGT00390000017730	ENSGT00390000010125	ENSGT00940000155706	ENSGT00940000158043	ENSGT00940000155938.b.a	ENSGT00390000018123.a.a	ENSGT00940000160934.c	ENSGT00440000033589.c	ENSGT00950000183170.a	ENSGT00940000159096	ENSGT00940000158301	ENSGT00940000157771	ENSGT00940000156205.h	ENSGT00940000156291.e	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a.l	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT01050000244857.A.a.b.f	ENSGT00940000157661.e.b	ENSGT00940000157462.C.c.a.m	ENSGT00940000153903.a.b.a.a
Denticle herring	MODERN SPECIES	7	aktip (ENSDCDG00000031379)	CHD9 (ENSDCDG00000024568)	TOX3 (ENSDCDG00000024124)	sall1a (ENSDCDG00000024120)	CYLD (ENSDCDG00000024116)	nod2 (ENSDCDG00000024103)	nkd1 (ENSDCDG00000024098)	brd7 (ENSDCDG00000024096)	adcy7 (ENSDCDG00000020745)	tent4b (ENSDCDG00000020649)	LRRC28 (ENSDCDG00000020645)	ENSDCDG00000020644	MCTP2 (ENSDCDG00000020302)	ENSDCDG00000020295	RCN1 (ENSDCDG00000035906) #21	pax6b (ENSDCDG00000035904) #22	elp4 (ENSDCDG00000035901) #23	immp1l (ENSDCDG00000035900) #24	mpped2a (ENSDCDG00000035899) ##27	ENSDCDG00000035898	ENSDCDG00000035897	csrp3 (ENSDCDG00000035896)	e2f8 (ENSDCDG00000035895)	mpped2a (ENSDCDG00000035894) ##27	ZDHHC13 (ENSDCDG00000035893)	csrp3 (ENSDCDG00000035892)	NAV2 (ENSDCDG00000035886)	dbx1a (ENSDCDG00000035870)	htatip2 (ENSDCDG00000035869)	ENSDCDG00000035868	ENSDCDG00000035867
Atlantic herring	MODERN SPECIES	22	rpl23a (ENSCHAG00000020512) #37	aktip (ENSCHAG00000020457)	CHD9 (ENSCHAG00000014665)	TOX3 (ENSCHAG00000014380)	sall1a (ENSCHAG00000014333)	CYLD (ENSCHAG00000014127)	nod2 (ENSCHAG00000014031)	nkd1 (ENSCHAG00000014022)	brd7 (ENSCHAG00000013986)	adcy7 (ENSCHAG00000013738)	tent4b (ENSCHAG00000013423)	LRRC28 (ENSCHAG00000013392)	ENSCHAG00000013316	MCTP2 (ENSCHAG00000013087)	RCN1 (ENSCHAG00000013051) #21	pax6b (ENSCHAG00000011631) #22	elp4 (ENSCHAG00000011336) #23	immp1l (ENSCHAG00000011318) #24	mpped2a (ENSCHAG00000011281) ##27	zdhhc13 (ENSCHAG00000011141)	csrp3 (ENSCHAG00000011105)	NAV2 (ENSCHAG00000006526)	dbx1a (ENSCHAG00000006362)	ENSCHAG00000006161	ENSCHAG00000005977	ABTB2 (ENSCHAG00000005811)	BRSK2 (ENSCHAG00000005308)	ENSCHAG00000005272	ENSCHAG00000005238	ENSCHAG00000005214	ENSCHAG00000005104
Otophysi	ANCESTRAL SPECIES	72	ENSGT00940000155645.i.b	ENSGT00940000154146.b.a	ENSGT00950000182940.b.a.a.g.b	ENSGT00530000063712.a.a.o.b.a.a	ENSGT00530000063712.a.a.o.a	ENSGT00940000164605.e	ENSGT00940000154876.a.a.a.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.g	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000156291.e	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00950000183093.B.b	ENSGT00940000155663.f.a	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00390000014757
Characiphysae	ANCESTRAL SPECIES	131															ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00390000014757	ENSGT00940000158287	ENSGT00940000157089.B
Characiphysae_b	ANCESTRAL SPECIES	221															ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963
Characoidei	ANCESTRAL SPECIES	423															ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24
Red-bellied piranha	MODERN SPECIES	646	tmppe (ENSPNAG00000001028)	exosc6 (ENSPNAG00000008453)	mtbl (ENSPNAG00000005481)	gnao1b (ENSPNAG00000001010)	tradd (ENSPNAG00000008435)	ogfod1 (ENSPNAG00000000994)	fbxl8 (ENSPNAG00000000986)	acd (ENSPNAG00000000982)	vrk3 (ENSPNAG00000000967)	ENSPNAG00000008396	gfod2 (ENSPNAG00000008389)	ENSPNAG00000000944	thap11 (ENSPNAG00000005009)	cog4 (ENSPNAG00000008359)	RCN1 (ENSPNAG00000008346) #21	pax6b (ENSPNAG00000008341) #22	elp4 (ENSPNAG00000000885) #23	ENSPNAG00000000837	immp1l (ENSPNAG00000000833) #24
Mexicana tetra	MODERN SPECIES	20		ENSAMXG00000036426	MARK1 (ENSAMXG00000004609)	ENSAMXG00000004646	ENSAMXG00000004662	ENSAMXG00000004677	kcnh1b (ENSAMXG00000039836)	ENSAMXG00000004706	commd2 (ENSAMXG00000030801)	wwtr1 (ENSAMXG00000004716)	tm4sf4 (ENSAMXG00000004720)	ENSAMXG00000004727	TM4SF1 (ENSAMXG00000036405)	cp (ENSAMXG00000004739)	hps3 (ENSAMXG00000004755)	pax6b (ENSAMXG00000001228) #22	elp4 (ENSAMXG00000001232) #23	ENSAMXG00000029924 #24	snrpa1 (ENSAMXG00000031397)	PCSK6 (ENSAMXG00000002828)	ENSAMXG00000036606	ankdd1a (ENSAMXG00000002868)	spg21 (ENSAMXG00000002888)	clpxa (ENSAMXG00000002914)	pdcd7 (ENSAMXG00000002916)	UBAP1L (ENSAMXG00000042348)	KBTBD13 (ENSAMXG00000025781)	rasl12 (ENSAMXG00000002924)	abhd2a (ENSAMXG00000038834)	AP2A2 (ENSAMXG00000002953)	ENSAMXG00000031349
Electric eel	MODERN SPECIES	1202																pax6b (ENSEEEG00000018138) #22
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.i.b	ENSGT00940000154146.b.a	ENSGT00950000182940.b.a.a.g.b	ENSGT00530000063712.a.a.o.b.a.a	ENSGT00530000063712.a.a.o.b.a.b	ENSGT00530000063712.a.a.o.a	ENSGT00940000154876.a.a.a.b	ENSGT00940000154876.a.a.a.a	ENSGT00940000156682.e.a	ENSGT00940000157771	ENSGT00940000156205.h.k.a	ENSGT00940000156291.e	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b	ENSGT00950000183093.B.b	ENSGT00940000155663.f.a	ENSGT00390000007681.b.a.a ##27	ENSGT00530000063074.b.a	ENSGT00940000159533	ENSGT00940000158651	ENSGT00940000155663.f.b	ENSGT00950000183093.B.a.b	ENSGT00390000008184	ENSGT00940000156825	ENSGT00940000154963	ENSGT00940000162676.a.a.l
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	228	ENSGT00390000016068.b	ENSGT00390000015400.j	ENSGT00940000155645.i.b.a	ENSGT00940000154146.b.a.x.b	ENSGT00950000182940.b.a.a.g.b.b	ENSGT00530000063712.a.a.o.b.a.a.a.b	ENSGT00530000063712.a.a.o.a.k.a	ENSGT00940000154876.a.a.a.b.f	ENSGT00940000154876.a.a.a.a.b	ENSGT00940000156682.e.a.a	ENSGT00940000157771.t	ENSGT00940000156205.h.k.a.b	ENSGT00940000156205.h.k.b.a	ENSGT00940000156291.e.a	ENSGT01010000222360.D.b.f #21	ENSGT00940000155391.a.b.b.a #22	ENSGT00390000001443.a #23	ENSGT00550000075025.d #24	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.a	ENSGT00390000007681.b.a.a.m.b ##27	ENSGT00530000063074.b.a.j	ENSGT00940000159533.o	ENSGT00940000158651.c	ENSGT00940000155663.f.b.c	ENSGT00950000183093.B.a.b.d.a.a	ENSGT00390000008184.a	ENSGT00940000156825.h	ENSGT00940000154963.f	ENSGT00920000150729.A.a	ENSGT00940000162676.b.a.b.a.a
Goldfish	MODERN SPECIES	47	mrpl46 (ENSCARG00000066075)	NTRK3 (ENSCARG00000065763)	ENSCARG00000065715	ENSCARG00000065677	sv2ba (ENSCARG00000065653)	mespba (ENSCARG00000065645)	mespaa (ENSCARG00000065640)	ENSCARG00000064612	ANPEP (ENSCARG00000064330)	igf1rb (ENSCARG00000057409)	LRRC28 (ENSCARG00000057035)	ENSCARG00000057020	ENSCARG00000057010	ENSCARG00000056603	RCN1 (ENSCARG00000056482) #21	pax6b (ENSCARG00000054974) #22	elp4 (ENSCARG00000054681) #23	immp1l (ENSCARG00000054630) #24	ENSCARG00000054586	ENSCARG00000054449	mpped2a (ENSCARG00000054421) ##27	zdhhc13 (ENSCARG00000054036)	csrp3 (ENSCARG00000053989)	NAV2 (ENSCARG00000049872)	dbx1a (ENSCARG00000049641)	htatip2 (ENSCARG00000049617)	prmt3 (ENSCARG00000049364)	slc6a5 (ENSCARG00000049048)	ENSCARG00000048993	ENSCARG00000048977	ENSCARG00000048968
Cyprininae_a	ANCESTRAL SPECIES	185	ENSGT00390000016068.b.a	ENSGT00390000015400.j	ENSGT00940000155645.i.b.a	ENSGT00940000154146.b.a.x.b	ENSGT00950000182940.b.a.a.g.b.b	ENSGT00530000063712.a.a.o.b.a.a.a.b	ENSGT00530000063712.a.a.o.a.k.a	ENSGT00940000154876.a.a.a.b.f	ENSGT00940000154876.a.a.a.a.b	ENSGT00940000156682.e.a.a	ENSGT00940000157771.t	ENSGT00940000156205.h.k.a.b	ENSGT00940000156205.h.k.b.a	ENSGT00940000156291.e.a	ENSGT01010000222360.D.b.f #21	ENSGT00940000155391.a.b.b.a #22	ENSGT00390000001443.a #23	ENSGT00550000075025.d #24	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.b	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.a	ENSGT00390000007681.b.a.a.m.b ##27	ENSGT00530000063074.b.a.j	ENSGT00940000159533.o	ENSGT00940000158651.c	ENSGT00940000155663.f.b.c	ENSGT00950000183093.B.a.b.d.b	ENSGT00950000183093.B.a.b.d.a.a	ENSGT00390000008184.a	ENSGT00940000156825.h	ENSGT00940000154963.f	ENSGT00920000150729.A.a
Common carp reference	MODERN SPECIES		mrpl46 (ENSCCRG00000017353)	NTRK3 (ENSCCRG00000074988)	ENSCCRG00000080887	si:dkey-172h23.2 (ENSCCRG00000062760)	sv2ba (ENSCCRG00000010713)	mespba (ENSCCRG00000059314)	ENSCCRG00000046283	ENSCCRG00000079481	igf1rb (ENSCCRG00000014052)	ENSCCRG00000066581	ENSCCRG00000027348	ENSCCRG00000060414	ENSCCRG00000026815	ENSCCRG00000044124 #21	elp4 (ENSCCRG00000000438) #23	pax6b (ENSCCRG00000028477) #22	immp1l (ENSCCRG00000000536) #24	ENSCCRG00000069413	ENSCCRG00000031150	mpped2a (ENSCCRG00000079412) ##27	zdhhc13 (ENSCCRG00000019248)	csrp3 (ENSCCRG00000019258)	e2f8 (ENSCCRG00000000111)	NAV2 (ENSCCRG00000000970)	dbx1a (ENSCCRG00000079124)	htatip2 (ENSCCRG00000061029)	prmt3 (ENSCCRG00000000806)	slc6a5 (ENSCCRG00000078373)	ENSCCRG00000055324	ENSCCRG00000071278	ENSCCRG00000013007
Golden-line barbel	MODERN SPECIES	859											igf1rb (ENSSGRG00000031721)	LRRC28 (ENSSGRG00000031718)	ENSSGRG00000031716	ENSSGRG00000031715	RCN1 (ENSSGRG00000031711) #21	pax6b (ENSSGRG00000030341) #22	elp4 (ENSSGRG00000030316) #23	immp1l (ENSSGRG00000030315) #24	ENSSGRG00000030215	ENSSGRG00000030208
Cyprininae	ANCESTRAL SPECIES	161	ENSGT00940000159749.d	ENSGT00390000016068.a	ENSGT00390000015400.i	ENSGT00940000155645.i.b.b	ENSGT00940000154146.b.a.x.a	ENSGT00950000182940.b.a.a.g.b.a	ENSGT00530000063712.a.a.o.b.a.a.a.a	ENSGT00530000063712.a.a.o.a.k.b	ENSGT00940000154876.a.a.a.b.e	ENSGT00940000154876.a.a.a.a.a	ENSGT00940000156682.e.a.b	ENSGT00940000157771.s	ENSGT00940000156205.h.k.a.a	ENSGT00940000156291.e.b	ENSGT01010000222360.D.b.e #21	ENSGT00940000155391.a.b.b.b #22	ENSGT00390000001443.b #23	ENSGT00550000075025.c #24	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.a.a.a.b	ENSGT00390000007681.b.a.a.m.a.b.b ##27
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	25	rhcga (ENSCARG00000014595)	kif7 (ENSCARG00000014768)	mrps11 (ENSCARG00000014953)	mrpl46 (ENSCARG00000014990)	NTRK3 (ENSCARG00000015022)	ENSCARG00000015128	sv2ba (ENSCARG00000015152)	mespba (ENSCARG00000015180)	mespaa (ENSCARG00000015187)	ENSCARG00000015208	igf1rb (ENSCARG00000015482)	LRRC28 (ENSCARG00000005854)	ENSCARG00000005874	ENSCARG00000005902	RCN1 (ENSCARG00000006002) #21	pax6b (ENSCARG00000006174) #22	elp4 (ENSCARG00000008441) #23	immp1l (ENSCARG00000008452) #24	ENSCARG00000008468	CEMIP (ENSCARG00000008591)	mesd (ENSCARG00000011791)	TLNRD1 (ENSCARG00000011803)	asb7 (ENSCARG00000011809)	ENSCARG00000011819	ADAMTS17 (ENSCARG00000011853)	MINAR1 (ENSCARG00000011964)	fah (ENSCARG00000011976)	mthfs (ENSCARG00000012009)	arnt2 (ENSCARG00000012046)	abhd17c (ENSCARG00000013120)	CEMIP (ENSCARG00000013223)
Goldfish	MODERN SPECIES	25	cd82a (ENSCARG00000020816)	tspan18a (ENSCARG00000020794)	ext2 (ENSCARG00000020731)	ENSCARG00000020708	caprin1a (ENSCARG00000018084)	nucb2a (ENSCARG00000017575)	rps13 (ENSCARG00000017545)	PLEKHA7 (ENSCARG00000016728)	sox6 (ENSCARG00000015974)	ENSCARG00000015925	calca (ENSCARG00000015916)	CYP2R1 (ENSCARG00000015886)	PDE3B (ENSCARG00000015859)	copb1 (ENSCARG00000015845)	rras2 (ENSCARG00000015838)	pax6b (ENSCARG00000015650) #22	elp4 (ENSCARG00000015584) #23	immp1l (ENSCARG00000015570) #24	ENSCARG00000015559	mpped2a (ENSCARG00000015552) ##27	TMC3 (ENSCARG00000015501)	ENSCARG00000015497	IL16 (ENSCARG00000015479)	mesd (ENSCARG00000015467)	CEMIP (ENSCARG00000013223)	abhd17c (ENSCARG00000013120)	arnt2 (ENSCARG00000012046)	mthfs (ENSCARG00000012009)	fah (ENSCARG00000011976)	MINAR1 (ENSCARG00000011964)	ADAMTS17 (ENSCARG00000011853)
Cyprininae_a	ANCESTRAL SPECIES	248	ENSGT00390000016068.a	ENSGT00390000015400.i	ENSGT00960000189817	ENSGT00940000155645.i.b.b	ENSGT00940000154146.b.a.x.a	ENSGT00950000182940.b.a.a.g.b.a	ENSGT00530000063712.a.a.o.b.a.a.a.a	ENSGT00530000063712.a.a.o.a.k.b	ENSGT00940000154876.a.a.a.b.e	ENSGT00940000154876.a.a.a.a.a	ENSGT00940000156682.e.a.b	ENSGT00940000157771.s	ENSGT00940000156205.h.k.a.a	ENSGT00940000156291.e.b	ENSGT01010000222360.D.b.e #21	ENSGT00940000155391.a.b.b.b #22	ENSGT00390000001443.b #23	ENSGT00550000075025.c #24	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.b
Common carp reference	MODERN SPECIES	6	kif7 (ENSCCRG00000017349)	mrps11 (ENSCCRG00000017355)	mrpl46 (ENSCCRG00000067215)	NTRK3 (ENSCCRG00000005300)	si:dkey-172h23.2 (ENSCCRG00000021605)	sv2ba (ENSCCRG00000021601)	mespba (ENSCCRG00000021596)	mespaa (ENSCCRG00000021594)	ENSCCRG00000061982	ENSCCRG00000045382	igf1rb (ENSCCRG00000002287)	ENSCCRG00000079595	ENSCCRG00000021133	ENSCCRG00000021147	RCN1 (ENSCCRG00000077682) #21	pax6b (ENSCCRG00000045912) #22	elp4 (ENSCCRG00000068491) #23	immp1l (ENSCCRG00000024529) #24	ENSCCRG00000065816	mpped2a (ENSCCRG00000007213) ##27	zdhhc13 (ENSCCRG00000079798)	csrp3 (ENSCCRG00000065216)	e2f8 (ENSCCRG00000055364)	NAV2 (ENSCCRG00000000859)	ENSCCRG00000074396	ENSCCRG00000056021	dbx1a (ENSCCRG00000000835)	htatip2 (ENSCCRG00000000812)	prmt3 (ENSCCRG00000047050)	slc6a5 (ENSCCRG00000012923)	ENSCCRG00000028084
Golden-line barbel	MODERN SPECIES	189	mrps11 (ENSSGRG00000037364)	ENSSGRG00000037367	NTRK3 (ENSSGRG00000037372)	ENSSGRG00000037380	sv2ba (ENSSGRG00000037385)	mespba (ENSSGRG00000037917)	mespaa (ENSSGRG00000037918)	ENSSGRG00000037919	ANPEP (ENSSGRG00000037924)	ANPEP (ENSSGRG00000038984)	igf1rb (ENSSGRG00000039057)	ENSSGRG00000042028	ENSSGRG00000042030	ENSSGRG00000042036	RCN1 (ENSSGRG00000042120) #21	pax6b (ENSSGRG00000042121) #22	elp4 (ENSSGRG00000042292) #23	immp1l (ENSSGRG00000042293) #24	ENSSGRG00000042294	ENSSGRG00000042295	mpped2a (ENSSGRG00000042297) ##27	mpped2a (ENSSGRG00000042298) ##27
Zebrafish	MODERN SPECIES	22	kif7 (ENSDARG00000033099)	mrps11 (ENSDARG00000075129)	mrpl46 (ENSDARG00000016307)	NTRK3 (ENSDARG00000086214)	si:dkey-172h23.2 (ENSDARG00000023868)	sv2ba (ENSDARG00000057427)	mespaa (ENSDARG00000017078)	mespba (ENSDARG00000030347)	ENSDARG00000089706	ANPEP (ENSDARG00000036809)	igf1rb (ENSDARG00000034434)	LRRC28 (ENSDARG00000057477)	ENSDARG00000057527	ENSDARG00000073970	RCN1 (ENSDARG00000070006) #21	pax6b (ENSDARG00000045936) #22	elp4 (ENSDARG00000008852) #23	immp1l (ENSDARG00000045935) #24	ENSDARG00000105564	ENSDARG00000060962	btr05 (ENSDARG00000074813)	btr06 (ENSDARG00000054184)	ENSDARG00000105558	mpped2a (ENSDARG00000006889) ##27	zdhhc13 (ENSDARG00000101144)	csrp3 (ENSDARG00000101706)	e2f8 (ENSDARG00000057323)	NAV2 (ENSDARG00000073688)	dbx1a (ENSDARG00000086393)	htatip2 (ENSDARG00000028386)	prmt3 (ENSDARG00000019791)
Euteleosteomorpha	ANCESTRAL SPECIES	94	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24
Acanthomorphata	ANCESTRAL SPECIES	18	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00970000197915	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Cod	MODERN SPECIES	5	tnni2b.1 (ENSGMOG00000018981)	ENSGMOG00000028561	TNNT3 (ENSGMOG00000011393)	ENSGMOG00000035611	ENSGMOG00000011350	ENSGMOG00000011343	ENSGMOG00000013397	spon1a (ENSGMOG00000013410)	ENSGMOG00000012262 #10	hipk3b (ENSGMOG00000012267) #12	cstf3 (ENSGMOG00000012275) #13	QSER1 (ENSGMOG00000024870) #16	prrg4 (ENSGMOG00000012288) #17	eif3m (ENSGMOG00000012291) #19	wt1b (ENSGMOG00000012296) #20	pax6b (ENSGMOG00000012304) #22	ELP4 (ENSGMOG00000012307) #23	immp1l (ENSGMOG00000012313) #24	ENSGMOG00000012317	ENSGMOG00000012328	ENSGMOG00000012331	ENSGMOG00000012337	ENSGMOG00000036663	ENSGMOG00000012354	ENSGMOG00000030849	ENSGMOG00000010414	ENSGMOG00000012375	ENSGMOG00000028340	kifbp (ENSGMOG00000012380)	ENSGMOG00000030625	vps26a (ENSGMOG00000012384)
Euacanthomorphacea	ANCESTRAL SPECIES	23	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Pinecone sodierfish	MODERN SPECIES	17	MAF (ENSMMDG00005009726)	ENSMMDG00005009724	ENSMMDG00005009723	ENSMMDG00005009719	SYT9 (ENSMMDG00005009603)	spon1a (ENSMMDG00005009581)	ENSMMDG00005009576 #10	hipk3b (ENSMMDG00005009570) #12	cstf3 (ENSMMDG00005003515) #13	depdc7a (ENSMMDG00005003431) #15	QSER1 (ENSMMDG00005003426) #16	prrg4 (ENSMMDG00005003425) #17	eif3m (ENSMMDG00005003423) #19	wt1b (ENSMMDG00005003422) #20	RCN1 (ENSMMDG00005003419) #21	pax6b (ENSMMDG00005002827) #22	elp4 (ENSMMDG00005002731) #23	immp1l (ENSMMDG00005024908) #24	ENSMMDG00005024907	ENSMMDG00005024906	ENSMMDG00005024905	rnaset2 (ENSMMDG00005024904)	MYOM2 (ENSMMDG00005024902)	ENSMMDG00005024901	ENSMMDG00005024900	ENSMMDG00005024899	csmd1a (ENSMMDG00005024897)	ENSMMDG00005024896	ddx21 (ENSMMDG00005024837)	mpc1 (ENSMMDG00005024836)	kifbp (ENSMMDG00005024835)
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Tiger tail seahorse	MODERN SPECIES	461	cmc2 (ENSHCOG00000015383)	CDYL2 (ENSHCOG00000015376)	MAF (ENSHCOG00000015343)	ENSHCOG00000015338	SYT9 (ENSHCOG00000015317)	spon1a (ENSHCOG00000015295)	ENSHCOG00000015268 #10	hipk3b (ENSHCOG00000015255) #12	cstf3 (ENSHCOG00000015218) #13	depdc7a (ENSHCOG00000015179) #15	QSER1 (ENSHCOG00000000582) #16	prrg4 (ENSHCOG00000015096) #17	eif3m (ENSHCOG00000015089) #19	wt1b (ENSHCOG00000015039) #20	RCN1 (ENSHCOG00000015012) #21	pax6b (ENSHCOG00000014993) #22	elp4 (ENSHCOG00000014971) #23	immp1l (ENSHCOG00000014965) #24	ENSHCOG00000014954	ENSHCOG00000014938	ENSHCOG00000014900	ENSHCOG00000014893	CSMD1 (ENSHCOG00000000408)	ENSHCOG00000014557	ddx21 (ENSHCOG00000014503)	psmc3 (ENSHCOG00000014492)	tbp (ENSHCOG00000014488)	pdcd2 (ENSHCOG00000014463)	ENSHCOG00000014456	ppm1g (ENSHCOG00000014448)	ENSHCOG00000014401
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Aplocheiloidei	ANCESTRAL SPECIES	16	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b
Mangrove rivulus	MODERN SPECIES	5	cmc2 (ENSKMAG00000010445)	CDYL2 (ENSKMAG00000010456)	MAF (ENSKMAG00000010484)	PPFIBP2 (ENSKMAG00000010500)	SYT9 (ENSKMAG00000010557)	spon1a (ENSKMAG00000010630)	ENSKMAG00000010699 #10	hipk3b (ENSKMAG00000010769) #12	cstf3 (ENSKMAG00000010916) #13	depdc7a (ENSKMAG00000011001) #15	QSER1 (ENSKMAG00000011034) #16	prrg4 (ENSKMAG00000011059) #17	eif3m (ENSKMAG00000011080) #19	wt1b (ENSKMAG00000011114) #20	RCN1 (ENSKMAG00000011140) #21	pax6b (ENSKMAG00000011173) #22	elp4 (ENSKMAG00000011224) #23	immp1l (ENSKMAG00000011237) #24	ENSKMAG00000011256
Turquoise killifish	MODERN SPECIES	1616	nr1h3 (ENSNFUG00015007447)	ARL14EP (ENSNFUG00015007596) #28	Nfu_g_1_020666 (ENSNFUG00015007607)	KCNA4 (ENSNFUG00015007610)	TNFAIP8L3 (ENSNFUG00015007618)	LYSMD2 (ENSNFUG00015007627)	tmod2 (ENSNFUG00015007636)	ENSNFUG00015007659	leo1 (ENSNFUG00015007664)	ENSNFUG00015007671	ENSNFUG00015007677	ENSNFUG00015007680	EIF3M (ENSNFUG00015007690) #19	wt1b (ENSNFUG00015007705) #20	RCN1 (ENSNFUG00015007713) #21	PAX-6 (ENSNFUG00015007841) #22	elp4 (ENSNFUG00015008700) #23	immp1l (ENSNFUG00015008708) #24	ENSNFUG00015008713	RPS6KA2 (ENSNFUG00015008798)	ENSNFUG00015009798	CTSD (ENSNFUG00015009863)	ENSNFUG00015010089	drd4b (ENSNFUG00015010122)	SIRT3 (ENSNFUG00015010188)	psmd13 (ENSNFUG00015010218)	ENSNFUG00015010300	JPH3 (ENSNFUG00015010309)	AL929115.2 (ENSNFUG00015010318)	CK2A2A (ENSNFUG00015010357)	MATCAP1 (ENSNFUG00015010480)
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00390000001960	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00390000001960	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Poecilia	ANCESTRAL SPECIES	4	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00390000001960	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
NAME_6	ANCESTRAL SPECIES	5	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00390000001960	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Amazon molly	MODERN SPECIES	285	cmc2 (ENSPFOG00000017476)	CDYL2 (ENSPFOG00000017464)	MAF (ENSPFOG00000017458)	PPFIBP2 (ENSPFOG00000017438)	SYT9 (ENSPFOG00000017418)	spon1a (ENSPFOG00000017357)	KIAA1549L (ENSPFOG00000017319) #10	hipk3b (ENSPFOG00000017272) #12	cstf3 (ENSPFOG00000017239) #13	depdc7a (ENSPFOG00000017193) #15	QSER1 (ENSPFOG00000017170) #16	prrg4 (ENSPFOG00000017161) #17	eif3m (ENSPFOG00000017134) #19	wt1b (ENSPFOG00000017089) #20	RCN1 (ENSPFOG00000017041) #21	pax6b (ENSPFOG00000016987) #22	elp4 (ENSPFOG00000016964) #23	elp4 (ENSPFOG00000016896) #23	immp1l (ENSPFOG00000016879) #24	ENSPFOG00000016735	ENSPFOG00000016747	ENSPFOG00000016720	MYOM2 (ENSPFOG00000016548)	CSMD1 (ENSPFOG00000016334)	ENSPFOG00000016305	ddx21 (ENSPFOG00000016196)	ENSPFOG00000016123	rrp15 (ENSPFOG00000020596)	mpc1 (ENSPFOG00000016111)	kifbp (ENSPFOG00000016039)	vps26a (ENSPFOG00000016032)
Sailfin molly	MODERN SPECIES	395			MAF (ENSPLAG00000009152)	ENSPLAG00000000200	SYT9 (ENSPLAG00000009225)	spon1a (ENSPLAG00000009302)	ENSPLAG00000009327 #10	hipk3b (ENSPLAG00000009376) #12	cstf3 (ENSPLAG00000009456) #13	depdc7a (ENSPLAG00000009494) #15	QSER1 (ENSPLAG00000009508) #16	prrg4 (ENSPLAG00000009512) #17	eif3m (ENSPLAG00000009551) #19	wt1b (ENSPLAG00000009581) #20	RCN1 (ENSPLAG00000009605) #21	pax6b (ENSPLAG00000009633) #22
Guppy	MODERN SPECIES	455	CDYL2 (ENSPREG00000013176)	MAF (ENSPREG00000013215)	PPFIBP2 (ENSPREG00000013251)	SYT9 (ENSPREG00000013318)	spon1a (ENSPREG00000013355)	ENSPREG00000013412 #10	hipk3b (ENSPREG00000013469) #12	cstf3 (ENSPREG00000013549) #13	depdc7a (ENSPREG00000013622) #15	QSER1 (ENSPREG00000013652) #16	prrg4 (ENSPREG00000013678) #17	wt1b (ENSPREG00000013693) #20	eif3m (ENSPREG00000013722) #19	RCN1 (ENSPREG00000013777) #21	ENSPREG00000013792	pax6b (ENSPREG00000013812) #22	elp4 (ENSPREG00000013896) #23	immp1l (ENSPREG00000013930) #24	ENSPREG00000014009	rnaset2 (ENSPREG00000014091)	ENSPREG00000014117	CSMD1 (ENSPREG00000014261)	ENSPREG00000014410	ENSPREG00000014468	ENSPREG00000014480	rrp15 (ENSPREG00000014485)	mpc1 (ENSPREG00000014499)	kifbp (ENSPREG00000014599)	ENSPREG00000014684	vps26a (ENSPREG00000014691)	supv3l1 (ENSPREG00000014702)
Platyfish	MODERN SPECIES	18	ENSXMAG00000026596	MAF (ENSXMAG00000021980)	PPFIBP2 (ENSXMAG00000003151)	SYT9 (ENSXMAG00000007022)	spon1a (ENSXMAG00000006973)	ENSXMAG00000009515 #10	hipk3b (ENSXMAG00000009517) #12	ENSXMAG00000029360	cstf3 (ENSXMAG00000009545) #13	depdc7a (ENSXMAG00000014170) #15	QSER1 (ENSXMAG00000014179) #16	prrg4 (ENSXMAG00000014189) #17	eif3m (ENSXMAG00000014190) #19	wt1b (ENSXMAG00000014221) #20	RCN1 (ENSXMAG00000014239) #21	pax6b (ENSXMAG00000014260) #22	elp4 (ENSXMAG00000014304) #23	ENSXMAG00000026444	immp1l (ENSXMAG00000014310) #24	ENSXMAG00000014312	ENSXMAG00000022893	MYOM2 (ENSXMAG00000014385)	CSMD1 (ENSXMAG00000014430)	ENSXMAG00000026336	ddx21 (ENSXMAG00000008199)	ENSXMAG00000014479	mpc1 (ENSXMAG00000023209)	rrp15 (ENSXMAG00000020298)	kifbp (ENSXMAG00000014516)	vps26a (ENSXMAG00000014529)	supv3l1 (ENSXMAG00000014547)
NAME_4	ANCESTRAL SPECIES	53	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00390000001960	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Mummichog	MODERN SPECIES	692	cmc2 (ENSFHEG00000020988)	CDYL2 (ENSFHEG00000020976)	MAF (ENSFHEG00000020937)	PPFIBP2 (ENSFHEG00000020934)	SYT9 (ENSFHEG00000020908)	spon1a (ENSFHEG00000020876)	ENSFHEG00000020777 #10	hipk3b (ENSFHEG00000020712) #12	cstf3 (ENSFHEG00000020623) #13	depdc7a (ENSFHEG00000020541) #15	QSER1 (ENSFHEG00000020534) #16	prrg4 (ENSFHEG00000020524) #17	eif3m (ENSFHEG00000020507) #19	wt1b (ENSFHEG00000020493) #20	RCN1 (ENSFHEG00000020440) #21	pax6b (ENSFHEG00000020408) #22	elp4 (ENSFHEG00000020375) #23	immp1l (ENSFHEG00000020365) #24	ENSFHEG00000020310	rnaset2 (ENSFHEG00000020292)	MYOM2 (ENSFHEG00000020245)	CSMD1 (ENSFHEG00000019491)	ENSFHEG00000019292	ENSFHEG00000019272	ddx21 (ENSFHEG00000019089)	rrp15 (ENSFHEG00000019028)	mpc1 (ENSFHEG00000019017)	kifbp (ENSFHEG00000019010)	ENSFHEG00000018965	rab27a (ENSFHEG00000018951)	pigb (ENSFHEG00000018928)
Sheepshead minnow	MODERN SPECIES	117	cmc2 (ENSCVAG00000020107)	CDYL2 (ENSCVAG00000020092)	MAF (ENSCVAG00000020060)	PPFIBP2 (ENSCVAG00000020050)	SYT9 (ENSCVAG00000020030)	spon1a (ENSCVAG00000019987)	ENSCVAG00000019913 #10	hipk3b (ENSCVAG00000019874) #12	cstf3 (ENSCVAG00000019739) #13	depdc7a (ENSCVAG00000019668) #15	QSER1 (ENSCVAG00000019657) #16	prrg4 (ENSCVAG00000019583) #17	eif3m (ENSCVAG00000019573) #19	wt1b (ENSCVAG00000019529) #20	RCN1 (ENSCVAG00000019506) #21	pax6b (ENSCVAG00000000505) #22	elp4 (ENSCVAG00000019394) #23	immp1l (ENSCVAG00000019383) #24	ENSCVAG00000019362	rnaset2 (ENSCVAG00000019247)	ENSCVAG00000019232	CSMD1 (ENSCVAG00000018638)	ENSCVAG00000018421	ddx21 (ENSCVAG00000018333)	DNAH5 (ENSCVAG00000000479)
Oryzias	ANCESTRAL SPECIES	13	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Japanese Medaka HdrR	MODERN SPECIES	17	ENSORLG00000009654	ENSORLG00000009678	spon1a (ENSORLG00000026461)	ENSORLG00000028061	ENSORLG00000030034	ENSORLG00000029752 #10	hipk3b (ENSORLG00000009737) #12	cstf3 (ENSORLG00000009762) #13	depdc7a (ENSORLG00000009791) #15	QSER1 (ENSORLG00000009814) #16	prrg4 (ENSORLG00000009819) #17	EIF3M (ENSORLG00000009848) #19	wt1b (ENSORLG00000009859) #20	RCN1 (ENSORLG00000029091) #21	ENSORLG00000009881	pax6b (ENSORLG00000009913) #22	elp4 (ENSORLG00000009918) #23	ENSORLG00000027973	immp1l (ENSORLG00000009928) #24	ENSORLG00000009979	rnaset2 (ENSORLG00000029310)	ENSORLG00000010005	CSMD1 (ENSORLG00000010058)	ENSORLG00000025681	ddx21 (ENSORLG00000010122)	ENSORLG00000010140	mpc1 (ENSORLG00000010164)	kifbp (ENSORLG00000010186)	vps26a (ENSORLG00000010208)	supv3l1 (ENSORLG00000010240)	hkdc1 (ENSORLG00000010258)
Chinese medaka	MODERN SPECIES	888	cmc2 (ENSOSIG00000016423)	CDYL2 (ENSOSIG00000016419)	MAF (ENSOSIG00000016409)	ENSOSIG00000016407	SYT9 (ENSOSIG00000016406)	spon1a (ENSOSIG00000015176)	hipk3b (ENSOSIG00000014734) #12	cstf3 (ENSOSIG00000014498) #13	depdc7a (ENSOSIG00000014494) #15	QSER1 (ENSOSIG00000014492) #16	prrg4 (ENSOSIG00000014489) #17	eif3m (ENSOSIG00000014485) #19	wt1b (ENSOSIG00000014475) #20	ENSOSIG00000014473	RCN1 (ENSOSIG00000014472) #21	pax6b (ENSOSIG00000012208) #22	elp4 (ENSOSIG00000012186) #23	immp1l (ENSOSIG00000012182) #24	ENSOSIG00000004038	rnaset2 (ENSOSIG00000003642)	ENSOSIG00000003441	CSMD1 (ENSOSIG00000003240)
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT00940000174513	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Javanese ricefish	MODERN SPECIES	17	ATMIN (ENSOJAG00000010900)	cenpn (ENSOJAG00000010913)	cmc2 (ENSOJAG00000010974)	CDYL2 (ENSOJAG00000010983)	MAF (ENSOJAG00000010995)	PPFIBP2 (ENSOJAG00000011033)	ENSOJAG00000011291	spon1a (ENSOJAG00000011311)	hipk3b (ENSOJAG00000011499) #12	cstf3 (ENSOJAG00000011914) #13	depdc7a (ENSOJAG00000012470) #15	prrg4 (ENSOJAG00000012680) #17	EIF3M (ENSOJAG00000012699) #19	wt1b (ENSOJAG00000012762) #20	RCN1 (ENSOJAG00000012811) #21	pax6b (ENSOJAG00000012869) #22	elp4 (ENSOJAG00000013244) #23	immp1l (ENSOJAG00000013264) #24	ENSOJAG00000013629	rnaset2 (ENSOJAG00000017762)	ENSOJAG00000017875	CSMD1 (ENSOJAG00000019928)	ENSOJAG00000021726	DDX50 (ENSOJAG00000021738)	ENSOJAG00000021749	mpc1 (ENSOJAG00000021768)	kifbp (ENSOJAG00000021785)	ENSOJAG00000021804	vps26a (ENSOJAG00000021829)	supv3l1 (ENSOJAG00000021909)	HK1 (ENSOJAG00000022059)
Indian medaka	MODERN SPECIES	26	CDYL2 (ENSOMEG00000003527)	MAF (ENSOMEG00000003546)	PPFIBP2 (ENSOMEG00000003605)	ENSOMEG00000003636	spon1a (ENSOMEG00000003700)	ENSOMEG00000000080 #10	hipk3b (ENSOMEG00000003788) #12	cstf3 (ENSOMEG00000003848) #13	depdc7a (ENSOMEG00000003873) #15	QSER1 (ENSOMEG00000003899) #16	prrg4 (ENSOMEG00000003908) #17	eif3m (ENSOMEG00000003931) #19	wt1b (ENSOMEG00000003946) #20	ENSOMEG00000003957	RCN1 (ENSOMEG00000003979) #21	pax6b (ENSOMEG00000004025) #22	elp4 (ENSOMEG00000004065) #23	immp1l (ENSOMEG00000004086) #24	ENSOMEG00000004177	rnaset2 (ENSOMEG00000004209)	ENSOMEG00000004277	CSMD1 (ENSOMEG00000004461)	ENSOMEG00000004501	ddx21 (ENSOMEG00000004523)	ENSOMEG00000004539	mpc1 (ENSOMEG00000004608)	kifbp (ENSOMEG00000004639)	ENSOMEG00000004662	vps26a (ENSOMEG00000004688)	supv3l1 (ENSOMEG00000004719)	hkdc1 (ENSOMEG00000004753)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT01100000263553.a.a.a.d.f	ENSGT00390000003100	ENSGT00950000182787.B
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	MODERN SPECIES	278	CDYL2 (ENSHBUG00000016282)	MAF (ENSHBUG00000016288)	PPFIBP2 (ENSHBUG00000016313)	SYT9 (ENSHBUG00000016364)	spon1a (ENSHBUG00000016418)	ENSHBUG00000016455 #10	hipk3b (ENSHBUG00000016572) #12	cstf3 (ENSHBUG00000016656) #13	depdc7a (ENSHBUG00000016687) #15	QSER1 (ENSHBUG00000016751) #16	prrg4 (ENSHBUG00000016765) #17	eif3m (ENSHBUG00000016804) #19	wt1b (ENSHBUG00000016837) #20	RCN1 (ENSHBUG00000016873) #21	pax6b (ENSHBUG00000016898) #22	pax6b (ENSHBUG00000016922) #22	elp4 (ENSHBUG00000016935) #23	immp1l (ENSHBUG00000016960) #24	ENSHBUG00000017069	rnaset2 (ENSHBUG00000000503)	ENSHBUG00000017099	CSMD1 (ENSHBUG00000017516)	ENSHBUG00000017627	ddx21 (ENSHBUG00000017638)	mpc1 (ENSHBUG00000017645)	kifbp (ENSHBUG00000017664)	ENSHBUG00000017685	vps26a (ENSHBUG00000017715)	ENSHBUG00000017720	supv3l1 (ENSHBUG00000017736)	hkdc1 (ENSHBUG00000017819)
Burton s mouthbrooder	MODERN SPECIES	278	cmc2 (ENSHBUG00000016271)	CDYL2 (ENSHBUG00000016282)	MAF (ENSHBUG00000016288)	PPFIBP2 (ENSHBUG00000016313)	SYT9 (ENSHBUG00000016364)	spon1a (ENSHBUG00000016418)	ENSHBUG00000016455 #10	hipk3b (ENSHBUG00000016572) #12	cstf3 (ENSHBUG00000016656) #13	depdc7a (ENSHBUG00000016687) #15	QSER1 (ENSHBUG00000016751) #16	prrg4 (ENSHBUG00000016765) #17	eif3m (ENSHBUG00000016804) #19	wt1b (ENSHBUG00000016837) #20	RCN1 (ENSHBUG00000016873) #21	pax6b (ENSHBUG00000016898) #22	pax6b (ENSHBUG00000016922) #22	elp4 (ENSHBUG00000016935) #23	immp1l (ENSHBUG00000016960) #24	ENSHBUG00000017069	rnaset2 (ENSHBUG00000000503)	ENSHBUG00000017099	CSMD1 (ENSHBUG00000017516)	ENSHBUG00000017627	ddx21 (ENSHBUG00000017638)	mpc1 (ENSHBUG00000017645)	kifbp (ENSHBUG00000017664)	ENSHBUG00000017685	vps26a (ENSHBUG00000017715)	ENSHBUG00000017720	supv3l1 (ENSHBUG00000017736)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT01100000263553.a.a.a.d.f	ENSGT00390000003100	ENSGT00950000182787.B
P. nyererei	MODERN SPECIES	461	cmc2 (ENSPNYG00000018581)	CDYL2 (ENSPNYG00000018560)	MAF (ENSPNYG00000018546)	PPFIBP2 (ENSPNYG00000018525)	SYT9 (ENSPNYG00000018498)	spon1a (ENSPNYG00000018447)	ENSPNYG00000018405 #10	hipk3b (ENSPNYG00000018333) #12	cstf3 (ENSPNYG00000018259) #13	depdc7a (ENSPNYG00000018203) #15	QSER1 (ENSPNYG00000018141) #16	prrg4 (ENSPNYG00000018114) #17	eif3m (ENSPNYG00000018073) #19	wt1b (ENSPNYG00000018035) #20	RCN1 (ENSPNYG00000018011) #21	pax6b (ENSPNYG00000017990) #22	elp4 (ENSPNYG00000017971) #23	immp1l (ENSPNYG00000017951) #24	ENSPNYG00000017881	rnaset2 (ENSPNYG00000017856)	MYOM2 (ENSPNYG00000017678)	CSMD1 (ENSPNYG00000017512)
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT01100000263553.a.a.a.d.f	ENSGT00390000003100	ENSGT00950000182787.B
Zebra mbuna	MODERN SPECIES	1091	CDYL2 (ENSMZEG00005012284)	ENSMZEG00005012272	MAF (ENSMZEG00005012264)	PPFIBP2 (ENSMZEG00005012230)	SYT9 (ENSMZEG00005012208)	spon1a (ENSMZEG00005012177)	ENSMZEG00005012152 #10	hipk3b (ENSMZEG00005012127) #12	cstf3 (ENSMZEG00005012082) #13	depdc7a (ENSMZEG00005012062) #15	QSER1 (ENSMZEG00005012029) #16	prrg4 (ENSMZEG00005012014) #17	eif3m (ENSMZEG00005011988) #19	wt1b (ENSMZEG00005011978) #20	RCN1 (ENSMZEG00005011965) #21	pax6b (ENSMZEG00005011922) #22	elp4 (ENSMZEG00005011879) #23	immp1l (ENSMZEG00005011865) #24	ENSMZEG00005011843	rnaset2 (ENSMZEG00005011825)	ENSMZEG00005011796	CSMD1 (ENSMZEG00005011703)	ENSMZEG00005011629	ddx21 (ENSMZEG00005011618)	mpc1 (ENSMZEG00005011609)	kifbp (ENSMZEG00005011605)	ENSMZEG00005011597	vps26a (ENSMZEG00005011581)	supv3l1 (ENSMZEG00005011568)	hkdc1 (ENSMZEG00005011532)	HK1 (ENSMZEG00005011481)
Eastern happy	MODERN SPECIES		CDYL2 (ENSACLG00000007151)	rpl30 (ENSACLG00000007160)	MAF (ENSACLG00000007176)	PPFIBP2 (ENSACLG00000007184)	SYT9 (ENSACLG00000007253)	spon1a (ENSACLG00000007296)	ENSACLG00000007789 #10	hipk3b (ENSACLG00000007796) #12	cstf3 (ENSACLG00000007820) #13	depdc7a (ENSACLG00000007858) #15	QSER1 (ENSACLG00000007880) #16	prrg4 (ENSACLG00000007910) #17	eif3m (ENSACLG00000007918) #19	wt1b (ENSACLG00000007937) #20	RCN1 (ENSACLG00000007963) #21	pax6b (ENSACLG00000007980) #22	elp4 (ENSACLG00000008037) #23	immp1l (ENSACLG00000008043) #24	ENSACLG00000008055	rnaset2 (ENSACLG00000008102)	MYOM2 (ENSACLG00000008114)	CSMD1 (ENSACLG00000008146)	ENSACLG00000008228	ddx21 (ENSACLG00000008248)	mpc1 (ENSACLG00000008261)	kifbp (ENSACLG00000008269)	ENSACLG00000008278	vps26a (ENSACLG00000008286)	ENSACLG00000008296	supv3l1 (ENSACLG00000008303)	hkdc1 (ENSACLG00000008310)
Lyretail cichlid	MODERN SPECIES	290	ENSNBRG00000007652	ENSNBRG00000007625	SYT9 (ENSNBRG00000007601)	spon1a (ENSNBRG00000007540)	ENSNBRG00000007502 #10	hipk3b (ENSNBRG00000007420) #12	ENSNBRG00000007388 #13	cstf3 (ENSNBRG00000007345) #13	depdc7a (ENSNBRG00000007303) #15	QSER1 (ENSNBRG00000007269) #16	prrg4 (ENSNBRG00000007240) #17	eif3m (ENSNBRG00000007198) #19	wt1b (ENSNBRG00000007171) #20	ENSNBRG00000007154	RCN1 (ENSNBRG00000006950) #21	pax6b (ENSNBRG00000006915) #22	elp4 (ENSNBRG00000006907) #23	immp1l (ENSNBRG00000006896) #24	ENSNBRG00000006841	rnaset2 (ENSNBRG00000006817)	MYOM2 (ENSNBRG00000006590)	CSMD1 (ENSNBRG00000006349)	ENSNBRG00000006320	ENSNBRG00000006220	ddx21 (ENSNBRG00000006198)	mpc1 (ENSNBRG00000006186)	kifbp (ENSNBRG00000006176)	ENSNBRG00000006160	vps26a (ENSNBRG00000006124)	supv3l1 (ENSNBRG00000006022)	hkdc1 (ENSNBRG00000005193)
Nile tilapia	MODERN SPECIES		cmc2 (ENSONIG00000035642)	CDYL2 (ENSONIG00000005598)	MAF (ENSONIG00000005596)	PPFIBP2 (ENSONIG00000005589)	SYT9 (ENSONIG00000005585)	spon1a (ENSONIG00000005578)	KIAA1549L (ENSONIG00000005573) #10	hipk3b (ENSONIG00000005569) #12	cstf3 (ENSONIG00000005563) #13	depdc7a (ENSONIG00000005559) #15	QSER1 (ENSONIG00000005555) #16	prrg4 (ENSONIG00000005554) #17	eif3m (ENSONIG00000005547) #19	wt1b (ENSONIG00000005545) #20	RCN1 (ENSONIG00000005543) #21	pax6b (ENSONIG00000005541) #22	elp4 (ENSONIG00000005538) #23	immp1l (ENSONIG00000005537) #24	ENSONIG00000005527	MYOM2 (ENSONIG00000005516)	rnaset2 (ENSONIG00000005526)	CSMD1 (ENSONIG00000005500)	ENSONIG00000040721	ddx21 (ENSONIG00000005499)	mpc1 (ENSONIG00000030716)	supv3l1 (ENSONIG00000005497)	ENSONIG00000031725	vps26a (ENSONIG00000005493)	ENSONIG00000028635	kifbp (ENSONIG00000005490)	supv3l1 (ENSONIG00000040683)
Midas cichlid	MODERN SPECIES	313	MAF (ENSACIG00000005335)	ENSACIG00000005349	ENSACIG00000005384	SYT9 (ENSACIG00000005401)	spon1a (ENSACIG00000005420)	ENSACIG00000005451 #10	hipk3b (ENSACIG00000005485) #12	ENSACIG00000005527 #13	cstf3 (ENSACIG00000005539) #13	depdc7a (ENSACIG00000005574) #15	QSER1 (ENSACIG00000005596) #16	prrg4 (ENSACIG00000005633) #17	eif3m (ENSACIG00000005650) #19	wt1b (ENSACIG00000005676) #20	RCN1 (ENSACIG00000005714) #21	pax6b (ENSACIG00000005867) #22	elp4 (ENSACIG00000005887) #23	immp1l (ENSACIG00000005907) #24	ENSACIG00000005924	MYOM2 (ENSACIG00000005981)	CSMD1 (ENSACIG00000006166)	ENSACIG00000006339	ddx21 (ENSACIG00000006429)	mpc1 (ENSACIG00000006477)	kifbp (ENSACIG00000006652)	ENSACIG00000006728	vps26a (ENSACIG00000006733)	supv3l1 (ENSACIG00000006824)	hkdc1 (ENSACIG00000006866)	HK1 (ENSACIG00000006924)	tacr2 (ENSACIG00000006986)
Pomacentridae	ANCESTRAL SPECIES	49	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Pomacentridae_A	ANCESTRAL SPECIES	47	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Amphiprion	ANCESTRAL SPECIES	39	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b.k	ENSGT00950000182858.A.b.b.g.b.l	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Orange clownfish	MODERN SPECIES		CDYL2 (ENSAPEG00000008292)	MAF (ENSAPEG00000008264)	ENSAPEG00000008213	ENSAPEG00000008193	SYT9 (ENSAPEG00000008163)	spon1a (ENSAPEG00000008111)	ENSAPEG00000008076 #10	hipk3b (ENSAPEG00000007989) #12	cstf3 (ENSAPEG00000007903) #13	depdc7a (ENSAPEG00000007876) #15	QSER1 (ENSAPEG00000007862) #16	prrg4 (ENSAPEG00000007850) #17	eif3m (ENSAPEG00000007816) #19	wt1b (ENSAPEG00000007784) #20	RCN1 (ENSAPEG00000007754) #21	pax6b (ENSAPEG00000007722) #22	elp4 (ENSAPEG00000007707) #23	immp1l (ENSAPEG00000007674) #24	ENSAPEG00000007588	rnaset2 (ENSAPEG00000007551)	MYOM2 (ENSAPEG00000007506)	ENSAPEG00000007469	CSMD1 (ENSAPEG00000007239)	ENSAPEG00000007124	ddx21 (ENSAPEG00000007108)	ENSAPEG00000007086	ENSAPEG00000007013	ENSAPEG00000006943	ENSAPEG00000006909	mpc1 (ENSAPEG00000006888)	kifbp (ENSAPEG00000006873)
Clown anemonefish	MODERN SPECIES	1611							ENSAOCG00000010798 #10	hipk3b (ENSAOCG00000010862) #12	cstf3 (ENSAOCG00000010930) #13	depdc7a (ENSAOCG00000010952) #15	QSER1 (ENSAOCG00000010970) #16	prrg4 (ENSAOCG00000010978) #17	eif3m (ENSAOCG00000011010) #19	wt1b (ENSAOCG00000011027) #20	RCN1 (ENSAOCG00000011045) #21	pax6b (ENSAOCG00000011096) #22	elp4 (ENSAOCG00000011131) #23	immp1l (ENSAOCG00000011165) #24
Spiny chromis	MODERN SPECIES	121											QSER1 (ENSAPOG00000011288) #16	prrg4 (ENSAPOG00000011307) #17	eif3m (ENSAPOG00000011373) #19	wt1b (ENSAPOG00000011422) #20	RCN1 (ENSAPOG00000011456) #21	pax6b (ENSAPOG00000011519) #22	elp4 (ENSAPOG00000011551) #23	immp1l (ENSAPOG00000011575) #24	ENSAPOG00000011673	rnaset2 (ENSAPOG00000011704)	MYOM2 (ENSAPOG00000011733)	ENSAPOG00000011772	CSMD1 (ENSAPOG00000001095)	ENSAPOG00000012062	ENSAPOG00000012199	ENSAPOG00000012229
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	722						spon1a (ENSSPAG00000004809)	ENSSPAG00000004825 #10	hipk3b (ENSSPAG00000004853) #12	cstf3 (ENSSPAG00000004958) #13	depdc7a (ENSSPAG00000005023) #15	QSER1 (ENSSPAG00000005037) #16	prrg4 (ENSSPAG00000005066) #17	eif3m (ENSSPAG00000005083) #19	wt1b (ENSSPAG00000005131) #20	RCN1 (ENSSPAG00000005169) #21	pax6b (ENSSPAG00000005243) #22	PAX6 (ENSSPAG00000006392) #22
Bicolor damselfish	MODERN SPECIES	722					spon1a (ENSSPAG00000004809)	ENSSPAG00000004825 #10	hipk3b (ENSSPAG00000004853) #12	cstf3 (ENSSPAG00000004958) #13	depdc7a (ENSSPAG00000005023) #15	QSER1 (ENSSPAG00000005037) #16	prrg4 (ENSSPAG00000005066) #17	eif3m (ENSSPAG00000005083) #19	wt1b (ENSSPAG00000005131) #20	RCN1 (ENSSPAG00000005169) #21	pax6b (ENSSPAG00000005243) #22	PAX6 (ENSSPAG00000006392) #22
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f.e	ENSGT00940000155701.D	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b	ENSGT00940000155512.r	ENSGT00940000157973
Tetraodon	MODERN SPECIES	20	cmc2 (ENSTNIG00000000544)	CDYL2 (ENSTNIG00000009276)	MAF (ENSTNIG00000005526)	ENSTNIG00000013816	SYT9 (ENSTNIG00000013815)	spon1a (ENSTNIG00000013814)	ENSTNIG00000013813 #10	hipk3b (ENSTNIG00000013812) #12	cstf3 (ENSTNIG00000013811) #13	depdc7a (ENSTNIG00000013810) #15	QSER1 (ENSTNIG00000013809) #16	prrg4 (ENSTNIG00000013808) #17	eif3m (ENSTNIG00000013807) #19	wt1b (ENSTNIG00000013806) #20	RCN1 (ENSTNIG00000013805) #21	pax6b (ENSTNIG00000013804) #22	elp4 (ENSTNIG00000013803) #23	ENSTNIG00000013802	rnaset2 (ENSTNIG00000013801)	MYOM2 (ENSTNIG00000013800)	CSMD1 (ENSTNIG00000013799)	ddx21 (ENSTNIG00000013798)	mpc1 (ENSTNIG00000013797)	kifbp (ENSTNIG00000013796)	vps26a (ENSTNIG00000013795)	supv3l1 (ENSTNIG00000013794)	hkdc1 (ENSTNIG00000013793)	HK1 (ENSTNIG00000013792)	tacr2 (ENSTNIG00000013791)	tspan15 (ENSTNIG00000013790)	ENSTNIG00000013789
Fugu	MODERN SPECIES	4	cmc2 (ENSTRUG00000018261)	CDYL2 (ENSTRUG00000018265)	MAF (ENSTRUG00000018285)	PPFIBP2 (ENSTRUG00000018289)	SYT9 (ENSTRUG00000008469)	spon1a (ENSTRUG00000003204)	KIAA1549L (ENSTRUG00000004096) #10	hipk3b (ENSTRUG00000004241) #12	cstf3 (ENSTRUG00000004959) #13	depdc7a (ENSTRUG00000005631) #15	QSER1 (ENSTRUG00000005934) #16	prrg4 (ENSTRUG00000006147) #17	eif3m (ENSTRUG00000006300) #19	wt1b (ENSTRUG00000006559) #20	RCN1 (ENSTRUG00000006760) #21	pax6b (ENSTRUG00000006935) #22	elp4 (ENSTRUG00000007181) #23	immp1l (ENSTRUG00000007368) #24	rnaset2 (ENSTRUG00000028924)	MYOM2 (ENSTRUG00000030555)	ENSTRUG00000026976	ENSTRUG00000027454	ENSTRUG00000033307	ENSTRUG00000029162	ENSTRUG00000026178
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Ballan wrasse	MODERN SPECIES		cmc2 (ENSLBEG00000002711)	CDYL2 (ENSLBEG00000002675)	MAF (ENSLBEG00000002648)	ENSLBEG00000002602	SYT9 (ENSLBEG00000002539)	spon1a (ENSLBEG00000002479)	ENSLBEG00000002459 #10	hipk3b (ENSLBEG00000002394) #12	cstf3 (ENSLBEG00000002306) #13	depdc7a (ENSLBEG00000002276) #15	QSER1 (ENSLBEG00000002233) #16	prrg4 (ENSLBEG00000002213) #17	eif3m (ENSLBEG00000002143) #19	wt1b (ENSLBEG00000002082) #20	RCN1 (ENSLBEG00000002031) #21	pax6b (ENSLBEG00000001965) #22	elp4 (ENSLBEG00000001913) #23	immp1l (ENSLBEG00000001884) #24	ENSLBEG00000001771	rnaset2 (ENSLBEG00000001745)	MYOM2 (ENSLBEG00000001678)	CSMD1 (ENSLBEG00000001403)	ENSLBEG00000001278	ddx21 (ENSLBEG00000001244)	ENSLBEG00000001218	ENSLBEG00000001209	mpc1 (ENSLBEG00000001184)	kifbp (ENSLBEG00000001158)	trpm7 (ENSLBEG00000000986)	ENSLBEG00000000864	sdr42e1 (ENSLBEG00000000843)
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Large yellow croaker	MODERN SPECIES	480	cenpn (ENSLCRG00005001349)	ENSLCRG00005001353	CDYL2 (ENSLCRG00005001354)	MAF (ENSLCRG00005001355)	PPFIBP2 (ENSLCRG00005001376)	SYT9 (ENSLCRG00005003571)	spon1a (ENSLCRG00005003595)	hipk3b (ENSLCRG00005004657) #12	cstf3 (ENSLCRG00005004821) #13	depdc7a (ENSLCRG00005005739) #15	QSER1 (ENSLCRG00005005740) #16	prrg4 (ENSLCRG00005005743) #17	eif3m (ENSLCRG00005005744) #19	wt1b (ENSLCRG00005005746) #20	RCN1 (ENSLCRG00005005748) #21	pax6b (ENSLCRG00005005758) #22	elp4 (ENSLCRG00005005777) #23	immp1l (ENSLCRG00005005799) #24	ENSLCRG00005005817	ENSLCRG00005006969	MYOM2 (ENSLCRG00005006994)	CSMD1 (ENSLCRG00005008485)	ENSLCRG00005008539	ddx21 (ENSLCRG00005008554)	ENSLCRG00005009453	mpc1 (ENSLCRG00005009454)	mpc1 (ENSLCRG00005009456)	kifbp (ENSLCRG00005009459)	ENSLCRG00005009460	vps26a (ENSLCRG00005009466)	supv3l1 (ENSLCRG00005009539)
European seabass	MODERN SPECIES	18	cmc2 (ENSDLAG00005030968)	ENSDLAG00005032416	ENSDLAG00005027773	ENSDLAG00005016453	ENSDLAG00005016407	spon1a (ENSDLAG00005015885)	KIAA1549L (ENSDLAG00005015824) #10	hipk3b (ENSDLAG00005014821) #12	cstf3 (ENSDLAG00005014611) #13	depdc7a (ENSDLAG00005014596) #15	QSER1 (ENSDLAG00005014586) #16	prrg4 (ENSDLAG00005014553) #17	eif3m (ENSDLAG00005014522) #19	wt1b (ENSDLAG00005032362) #20	RCN1 (ENSDLAG00005014488) #21	pax6b (ENSDLAG00005013674) #22	elp4 (ENSDLAG00005013497) #23	immp1l (ENSDLAG00005013467) #24	ENSDLAG00005012545	ENSDLAG00005031897	ENSDLAG00005012143	ENSDLAG00005010694	ENSDLAG00005012130	ENSDLAG00005027401	ENSDLAG00005010490	ENSDLAG00005010054	ENSDLAG00005009906	ENSDLAG00005030424	kifbp (ENSDLAG00005009813)	ENSDLAG00005009799	vps26a (ENSDLAG00005033936)
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010008820	MAF (ENSSAUG00010008824)	ENSSAUG00010008829	PPFIBP2 (ENSSAUG00010008841)	SYT9 (ENSSAUG00010009616)	spon1a (ENSSAUG00010009633)	KIAA1549L (ENSSAUG00010009724) #10	hipk3b (ENSSAUG00010009741) #12	cstf3 (ENSSAUG00010011355) #13	depdc7a (ENSSAUG00010011410) #15	QSER1 (ENSSAUG00010011413) #16	prrg4 (ENSSAUG00010011414) #17	eif3m (ENSSAUG00010011415) #19	wt1b (ENSSAUG00010011416) #20	RCN1 (ENSSAUG00010011418) #21	pax6b (ENSSAUG00010011439) #22	elp4 (ENSSAUG00010012830) #23	immp1l (ENSSAUG00010012834) #24	ENSSAUG00010012920	rnaset2 (ENSSAUG00010023732)	MYOM2 (ENSSAUG00010023769)	CSMD1 (ENSSAUG00010023825)	ENSSAUG00010023844	ddx21 (ENSSAUG00010023853)	ENSSAUG00010023914	ENSSAUG00010023916	ENSSAUG00010023919	ENSSAUG00010023920	mpc1 (ENSSAUG00010023922)	kifbp (ENSSAUG00010023932)	ENSSAUG00010023938
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000166312.b.a	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b
Pike perch	MODERN SPECIES	29	CDYL2 (ENSSLUG00000011968)	MAF (ENSSLUG00000011971)	PPFIBP2 (ENSSLUG00000011972)	ENSSLUG00000011977	SYT9 (ENSSLUG00000011988)	spon1a (ENSSLUG00000012035)	ENSSLUG00000012077 #10	hipk3b (ENSSLUG00000012086) #12	cstf3 (ENSSLUG00000012145) #13	depdc7a (ENSSLUG00000012360) #15	QSER1 (ENSSLUG00000012383) #16	prrg4 (ENSSLUG00000012393) #17	eif3m (ENSSLUG00000012405) #19	wt1b (ENSSLUG00000012427) #20	RCN1 (ENSSLUG00000012476) #21	pax6b (ENSSLUG00000012533) #22	elp4 (ENSSLUG00000013716) #23	immp1l (ENSSLUG00000013727) #24	ENSSLUG00000013816	rnaset2 (ENSSLUG00000014335)	MYOM2 (ENSSLUG00000014461)	ENSSLUG00000016621	ENSSLUG00000016633	csmd1a (ENSSLUG00000016638)	ENSSLUG00000016642	ddx21 (ENSSLUG00000016681)	gbgt1l5 (ENSSLUG00000017471)	mpc1 (ENSSLUG00000017492)	kifbp (ENSSLUG00000017511)	ENSSLUG00000017526	vps26a (ENSSLUG00000017543)
Channel bull blenny	MODERN SPECIES	17	CDYL2 (ENSCGOG00000020740)	ENSCGOG00000020746	MAF (ENSCGOG00000020750)	PPFIBP2 (ENSCGOG00000020761)	SYT9 (ENSCGOG00000021015)	ENSCGOG00000021016	ENSCGOG00000021018	spon1a (ENSCGOG00000021031)	hipk3b (ENSCGOG00000021259) #12	cstf3 (ENSCGOG00000021343) #13	depdc7a (ENSCGOG00000021464) #15	prrg4 (ENSCGOG00000002620) #17	eif3m (ENSCGOG00000002728) #19	wt1b (ENSCGOG00000003193) #20	RCN1 (ENSCGOG00000003291) #21	pax6b (ENSCGOG00000003354) #22	elp4 (ENSCGOG00000004976) #23	immp1l (ENSCGOG00000004982) #24	ENSCGOG00000005124	rnaset2 (ENSCGOG00000011342)	ENSCGOG00000011345	MYOM2 (ENSCGOG00000011370)	ENSCGOG00000011849	ENSCGOG00000011852	ENSCGOG00000011856	ENSCGOG00000011861	csmd1a (ENSCGOG00000011865)	ENSCGOG00000011873	ddx21 (ENSCGOG00000011916)	mpc1 (ENSCGOG00000012486)	kifbp (ENSCGOG00000012532)
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b
Lumpfish	MODERN SPECIES	18	CDYL2 (ENSCLMG00005000980)	MAF (ENSCLMG00005000983)	PPFIBP2 (ENSCLMG00005000991)	SYT9 (ENSCLMG00005001827)	spon1a (ENSCLMG00005001862)	ENSCLMG00005001863 #10	hipk3b (ENSCLMG00005001874) #12	cstf3 (ENSCLMG00005002598) #13	depdc7a (ENSCLMG00005002714) #15	QSER1 (ENSCLMG00005002715) #16	prrg4 (ENSCLMG00005002716) #17	eif3m (ENSCLMG00005002719) #19	wt1b (ENSCLMG00005002720) #20	RCN1 (ENSCLMG00005002721) #21	ENSCLMG00005002723	pax6b (ENSCLMG00005002725) #22	elp4 (ENSCLMG00005003205) #23	immp1l (ENSCLMG00005003526) #24	ENSCLMG00005003534	rnaset2 (ENSCLMG00005004154)	MYOM2 (ENSCLMG00005004158)	ENSCLMG00005004259	ENSCLMG00005004287	ENSCLMG00005004304	ENSCLMG00005004332	csmd1a (ENSCLMG00005004362)	ENSCLMG00005004421	ddx21 (ENSCLMG00005004553)	mpc1 (ENSCLMG00005004669)	kifbp (ENSCLMG00005004697)	ENSCLMG00005004776
Stickleback	MODERN SPECIES	1	cmc2 (ENSGACG00000015977)	CDYL2 (ENSGACG00000015978)	MAF (ENSGACG00000015980)	PPFIBP2 (ENSGACG00000015982)	SYT9 (ENSGACG00000015987)	spon1a (ENSGACG00000015990)	ENSGACG00000015992 #10	hipk3b (ENSGACG00000015995) #12	cstf3 (ENSGACG00000015997) #13	depdc7a (ENSGACG00000016001) #15	QSER1 (ENSGACG00000016002) #16	prrg4 (ENSGACG00000016006) #17	eif3m (ENSGACG00000016009) #19	wt1b (ENSGACG00000016020) #20	RCN1 (ENSGACG00000016025) #21	pax6b (ENSGACG00000016030) #22	elp4 (ENSGACG00000016032) #23	immp1l (ENSGACG00000016034) #24	ENSGACG00000016035	rnaset2 (ENSGACG00000016041)	ENSGACG00000016045	CSMD1 (ENSGACG00000016050)	ENSGACG00000016059	ddx21 (ENSGACG00000016060)	dnai7 (ENSGACG00000016061)	ENSGACG00000016064	mpc1 (ENSGACG00000016067)	kifbp (ENSGACG00000016068)	ENSGACG00000016070	vps26a (ENSGACG00000016072)	supv3l1 (ENSGACG00000016077)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000020542	ENSMAMG00000020532	ENSMAMG00000020516	ENSMAMG00000026817	ENSMAMG00000025356	spon1a (ENSMAMG00000020500)	ENSMAMG00000026873 #10	hipk3b (ENSMAMG00000020443) #12	cstf3 (ENSMAMG00000020423) #13	depdc7a (ENSMAMG00000020418) #15	QSER1 (ENSMAMG00000020414) #16	prrg4 (ENSMAMG00000020402) #17	eif3m (ENSMAMG00000020390) #19	wt1b (ENSMAMG00000020379) #20	RCN1 (ENSMAMG00000028018) #21	pax6b (ENSMAMG00000020361) #22	elp4 (ENSMAMG00000020352) #23	immp1l (ENSMAMG00000020345) #24	ENSMAMG00000020329	ENSMAMG00000020321	ENSMAMG00000024537	ENSMAMG00000020260	ENSMAMG00000019635	ENSMAMG00000019683	ENSMAMG00000019694	ENSMAMG00000024952	ENSMAMG00000019707	ENSMAMG00000019726	rufy2 (ENSMAMG00000020120)	ENSMAMG00000020155	pbld (ENSMAMG00000020177)
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00940000164318	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100
Climbing perch	MODERN SPECIES	16	ATMIN (ENSATEG00000026624)	cenpn (ENSATEG00000000720)	cmc2 (ENSATEG00000000716)	ENSATEG00000000664	ENSATEG00000000651	ENSATEG00000028145	ENSATEG00000000520	spon1a (ENSATEG00000000456)	hipk3b (ENSATEG00000000285) #12	cstf3 (ENSATEG00000000190) #13	DEPDC7 (ENSATEG00000000182) #15	ENSATEG00000000029 #16	ENSATEG00000022520 #19	WT1 (ENSATEG00000022506) #20	RCN1 (ENSATEG00000022490) #21	pax6b (ENSATEG00000022478) #22	elp4 (ENSATEG00000022468) #23	immp1l (ENSATEG00000022459) #24	ENSATEG00000022422	rnaset2 (ENSATEG00000022393)	ENSATEG00000022345	ENSATEG00000022268	csmd1a (ENSATEG00000026451)	ENSATEG00000022212	ENSATEG00000022194	ENSATEG00000021858	ENSATEG00000021746	ENSATEG00000021741	ENSATEG00000021731	kifbp (ENSATEG00000021720)	ENSATEG00000027333
Siamese fighting fish	MODERN SPECIES	14	CDYL2 (ENSBSLG00000022316)	MAF (ENSBSLG00000022278)	PPFIBP2 (ENSBSLG00000022250)	SYT9 (ENSBSLG00000022233)	spon1a (ENSBSLG00000021854)	KIAA1549L (ENSBSLG00000021777) #10	hipk3b (ENSBSLG00000021675) #12	cstf3 (ENSBSLG00000021420) #13	depdc7a (ENSBSLG00000021362) #15	QSER1 (ENSBSLG00000021331) #16	prrg4 (ENSBSLG00000021321) #17	eif3m (ENSBSLG00000021132) #19	wt1b (ENSBSLG00000020925) #20	RCN1 (ENSBSLG00000020924) #21	ENSBSLG00000020923	pax6b (ENSBSLG00000020851) #22	elp4 (ENSBSLG00000020842) #23	immp1l (ENSBSLG00000020840) #24	ENSBSLG00000020464	ENSBSLG00000019380	rnaset2 (ENSBSLG00000019341)	CSMD1 (ENSBSLG00000016512)	ENSBSLG00000016452	ddx21 (ENSBSLG00000016332)	ENSBSLG00000016311	mpc1 (ENSBSLG00000016304)	kifbp (ENSBSLG00000016264)	ENSBSLG00000016257	vps26a (ENSBSLG00000016217)	supv3l1 (ENSBSLG00000016169)	HK1 (ENSBSLG00000016009)
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Carangaria_A	ANCESTRAL SPECIES	20	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Barramundi perch	MODERN SPECIES	107	cenpn (ENSLCAG00010003881)	cmc2 (ENSLCAG00010003885)	CDYL2 (ENSLCAG00010003889)	MAF (ENSLCAG00010003892)	PPFIBP2 (ENSLCAG00010003923)	SYT9 (ENSLCAG00010004031)	spon1a (ENSLCAG00010004082)	hipk3b (ENSLCAG00010004305) #12	cstf3 (ENSLCAG00010004427) #13	depdc7a (ENSLCAG00010004732) #15	QSER1 (ENSLCAG00010004740) #16	prrg4 (ENSLCAG00010004747) #17	eif3m (ENSLCAG00010004753) #19	wt1b (ENSLCAG00010004762) #20	RCN1 (ENSLCAG00010004771) #21	pax6b (ENSLCAG00010004795) #22	elp4 (ENSLCAG00010004854) #23	immp1l (ENSLCAG00010004867) #24	ENSLCAG00010005087	rnaset2 (ENSLCAG00010005745)	MYOM2 (ENSLCAG00010005920)	CSMD1 (ENSLCAG00010006698)
Seriola	ANCESTRAL SPECIES	13	ENSGT00390000016908	ENSGT00940000159646	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00950000182858.A.b.b.g.b	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B
Yellowtail amberjack	MODERN SPECIES	3246					ENSSLDG00000025645	spon1a (ENSSLDG00000025646)	ENSSLDG00000025647 #10	hipk3b (ENSSLDG00000025648) #12	cstf3 (ENSSLDG00000025649) #13	depdc7a (ENSSLDG00000025650) #15	QSER1 (ENSSLDG00000025651) #16	prrg4 (ENSSLDG00000025652) #17	eif3m (ENSSLDG00000025653) #19	wt1b (ENSSLDG00000025654) #20	RCN1 (ENSSLDG00000025655) #21	pax6b (ENSSLDG00000025656) #22	elp4 (ENSSLDG00000025657) #23	immp1l (ENSSLDG00000025658) #24	ENSSLDG00000025659	rnaset2 (ENSSLDG00000025660)	MYOM2 (ENSSLDG00000025661)	CSMD1 (ENSSLDG00000025662)	ENSSLDG00000025663	ENSSLDG00000025664	ddx21 (ENSSLDG00000025665)	ENSSLDG00000025666	mpc1 (ENSSLDG00000025667)	kifbp (ENSSLDG00000025668)	ENSSLDG00000025669	vps26a (ENSSLDG00000025670)	supv3l1 (ENSSLDG00000025671)
Greater amberjack	MODERN SPECIES	1	CDYL2 (ENSSDUG00000020205)	MAF (ENSSDUG00000020239)	PPFIBP2 (ENSSDUG00000020253)	SYT9 (ENSSDUG00000020276)	spon1a (ENSSDUG00000020296)	ENSSDUG00000020333 #10	hipk3b (ENSSDUG00000020362) #12	cstf3 (ENSSDUG00000020426) #13	depdc7a (ENSSDUG00000020479) #15	depdc7a (ENSSDUG00000020535) #15	QSER1 (ENSSDUG00000020555) #16	prrg4 (ENSSDUG00000020592) #17	eif3m (ENSSDUG00000020604) #19	wt1b (ENSSDUG00000020629) #20	RCN1 (ENSSDUG00000020648) #21	pax6b (ENSSDUG00000020665) #22	elp4 (ENSSDUG00000020753) #23	immp1l (ENSSDUG00000020771) #24	ENSSDUG00000020786	rnaset2 (ENSSDUG00000020833)	MYOM2 (ENSSDUG00000020883)	CSMD1 (ENSSDUG00000021170)	ENSSDUG00000021379	ddx21 (ENSSDUG00000021420)	ENSSDUG00000021443	mpc1 (ENSSDUG00000021513)	kifbp (ENSSDUG00000021573)	ENSSDUG00000021579	vps26a (ENSSDUG00000021583)	supv3l1 (ENSSDUG00000021594)	hkdc1 (ENSSDUG00000021637)
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00940000161531.a.a	ENSGT01050000244951.a.b.a.a.g.b	ENSGT01050000244951.a.b.a.a.h	ENSGT00940000155948.b.a	ENSGT00940000154910.b.b	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.l #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000174513	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00940000159956	ENSGT00640000091563.a	ENSGT00940000157057.f	ENSGT00940000155701.D	ENSGT00530000064569.b	ENSGT00940000155043	ENSGT00510000046988	ENSGT00390000013819	ENSGT00940000176953	ENSGT00950000183064.a.b.b	ENSGT00390000003100	ENSGT00950000182787.B	ENSGT00950000182787.A.b
Tongue sole	MODERN SPECIES	15	HK1 (ENSCSEG00000014119)	tacr2 (ENSCSEG00000014151)	tspan15 (ENSCSEG00000014162)	ENSCSEG00000014177	pbld (ENSCSEG00000014200)	HNRNPH3 (ENSCSEG00000014207)	KIAA1549L (ENSCSEG00000014217) #10	hipk3b (ENSCSEG00000014238) #12	cstf3 (ENSCSEG00000014283) #13	depdc7a (ENSCSEG00000014319) #15	QSER1 (ENSCSEG00000014329) #16	prrg4 (ENSCSEG00000014352) #17	eif3m (ENSCSEG00000014358) #19	wt1b (ENSCSEG00000014378) #20	RCN1 (ENSCSEG00000014384) #21	pax6b (ENSCSEG00000014397) #22	elp4 (ENSCSEG00000014446) #23	immp1l (ENSCSEG00000014509) #24	irf8 (ENSCSEG00000014526)	dusp22a (ENSCSEG00000014548)	cox4i1 (ENSCSEG00000014570)	emc8 (ENSCSEG00000014587)	gins2 (ENSCSEG00000014601)	gse1b (ENSCSEG00000014621)	ENSCSEG00000014689	ATMIN (ENSCSEG00000014693)	cenpn (ENSCSEG00000014700)	cmc2 (ENSCSEG00000014703)	CDYL2 (ENSCSEG00000014709)	MAF (ENSCSEG00000014730)	ENSCSEG00000014739
Turbot	MODERN SPECIES	17	ENSSMAG00000001851	ENSSMAG00000001864	ENSSMAG00000001882	ENSSMAG00000001973	spon1a (ENSSMAG00000001982)	KIAA1549L (ENSSMAG00000002034) #10	hipk3b (ENSSMAG00000002060) #12	cstf3 (ENSSMAG00000002197) #13	depdc7a (ENSSMAG00000002286) #15	QSER1 (ENSSMAG00000002320) #16	prrg4 (ENSSMAG00000002342) #17	EIF3M (ENSSMAG00000002377) #19	wt1b (ENSSMAG00000002419) #20	RCN1 (ENSSMAG00000002459) #21	ENSSMAG00000002482	pax6b (ENSSMAG00000002493) #22	elp4 (ENSSMAG00000002597) #23	immp1l (ENSSMAG00000002620) #24	ENSSMAG00000002729	ENSSMAG00000003316	ENSSMAG00000003332	ENSSMAG00000003491	ENSSMAG00000021457	ENSSMAG00000003796	ENSSMAG00000003932	ENSSMAG00000035401	kifbp (ENSSMAG00000003974)	ENSSMAG00000003993	vps26a (ENSSMAG00000004002)	supv3l1 (ENSSMAG00000004035)	hkdc1 (ENSSMAG00000004095)
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00940000160363	ENSGT01050000244857.C.a.a.g	ENSGT00940000166109	ENSGT00940000153289.b	ENSGT00940000157530.b.b	ENSGT00940000175917.c	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.k.a #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456 #19	ENSGT00940000156734.b #20	ENSGT01010000222360.D.b #21	ENSGT00940000155391.a.b.b #22	ENSGT00390000001443 #23	ENSGT00550000075025 #24	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000166520.i.b	ENSGT00940000158086.a.a	ENSGT00940000155524.f	ENSGT00390000006548.b	ENSGT00940000164795	ENSGT00390000018319.a.a.a.b.c	ENSGT00390000006548.a.b.b	ENSGT00940000155628
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000153289.b.ib	ENSGT00940000154311.a.b.cb.a.a.b	ENSGT00940000153289.b.hb	ENSGT00940000157530.b.b	ENSGT00940000175917.c	ENSGT00530000063472.b.b.a.b.a.a #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.k.a #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456.c #19	ENSGT00940000156734.b.d.a.a #20	ENSGT00940000156734.b.c #20	ENSGT01010000222360.D.b.d #21	ENSGT00940000155391.a.b.b.g #22	ENSGT00390000001443.g #23	ENSGT00550000075025 #24	ENSGT00390000007681.b.a.a.s.b.a ##27	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000157725.q.b	ENSGT00940000166520.i.b	ENSGT00940000157725.q.a	ENSGT00940000158086.a.a.b	ENSGT00940000155524.f	ENSGT00390000006548.a.b.a.b	ENSGT00940000155628.cb.a.b
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000157530.b.a	ENSGT00940000165480.b	ENSGT00940000165480.a	ENSGT00730000111007.a.b	ENSGT00940000175917.c	ENSGT00530000063472.b.b.a.b.a.a.d #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.k.a #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456.c #19	ENSGT00940000156734.b.d.a.a #20	ENSGT00940000156734.b.c #20	ENSGT01010000222360.D.b.d #21	ENSGT00940000155391.a.b.b.g #22	ENSGT00390000001443.g #23	ENSGT00550000075025.a.a #24	ENSGT00390000007681.b.a.a.s.b.a ##27	ENSGT01100000263521.a.a.b.a.a.d.b.b.b	ENSGT01100000263507.A	ENSGT00390000017361.w	ENSGT00940000155491.d	ENSGT00940000159422.a.b.a.a.a	ENSGT00940000159422.a.b.a.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000157725.q.b	ENSGT00940000166520.i.b	ENSGT00940000158086.a.a.b.b	ENSGT00940000157725.q.a
Oncorhynchus	ANCESTRAL SPECIES	210																ENSGT00940000155391.a.b.b.g #22	ENSGT00390000001443.g #23	ENSGT00550000075025.a.a #24	ENSGT00390000007681.b.a.a.s.b.a ##27	ENSGT01100000263521.a.a.b.a.a.d.b.b.a	ENSGT01100000263507.D.e.a
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000061487	ENSOMYG00000033826	KIAA1549L (ENSOMYG00000060127) #10	HIPK3 (ENSOMYG00000070793) #12	ENSOMYG00000059792	cstf3 (ENSOMYG00000034222) #13	depdc7a (ENSOMYG00000034304) #15	ENSOMYG00000054737	QSER1 (ENSOMYG00000034518) #16	prrg4 (ENSOMYG00000034434) #17	CSN7 (ENSOMYG00000034561) #19	ENSOMYG00000077334	wt1b (ENSOMYG00000034551) #20	ENSOMYG00000068908	RCN1 (ENSOMYG00000034570) #21	pax6b (ENSOMYG00000020892) #22	elp4 (ENSOMYG00000034580) #23	ENSOMYG00000071880	immp1l (ENSOMYG00000034591) #24	ENSOMYG00000077872	ENSOMYG00000058789	mpped2a (ENSOMYG00000068669) ##27	ENSOMYG00000065576	ENSOMYG00000067043	ENSOMYG00000076959	ENSOMYG00000066154	ENSOMYG00000020385	ENSOMYG00000020482	crabp1b (ENSOMYG00000062647)	slc25a44b (ENSOMYG00000027293)	ENSOMYG00000021936
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000155391.a.b.b.g #22
Chinook salmon	MODERN SPECIES	3					ENSOTSG00005013890	ENSOTSG00005013889	ENSOTSG00005013887	hsd17b12b (ENSOTSG00005013884)	ENSOTSG00005013883	LRRC4C (ENSOTSG00005013882)	neo1a (ENSOTSG00005013502)	BBS4 (ENSOTSG00005013478)	SCAMP2 (ENSOTSG00005013476)	myo9aa (ENSOTSG00005013468)	glceb (ENSOTSG00005013464)	PAX6 (ENSOTSG00005013463) #22	ENSOTSG00005013462	selenos (ENSOTSG00005013460)	chsy1 (ENSOTSG00005013458)	aldh1a3 (ENSOTSG00005013455)	asb7 (ENSOTSG00005013453)	ENSOTSG00005013451	ENSOTSG00005013448	PPIP5K1 (ENSOTSG00005012992)	ENSOTSG00005012990	HAPLN3 (ENSOTSG00005012989)	mfge8a (ENSOTSG00005012988)	ABHD2 (ENSOTSG00005012987)	ENSOTSG00005021952	CTXN2 (ENSOTSG00005021951)	ENSOTSG00005021948
Coho salmon	MODERN SPECIES	956																PAX6 (ENSOKIG00005040053) #22
Salmo	ANCESTRAL SPECIES	198					ENSGT00940000164679.f.b	ENSGT00940000157530.b.a.d	ENSGT00940000175917.c	ENSGT00530000063472.b.b.a.b.a.a.d #10	ENSGT00940000155960.b #12	ENSGT00390000006758.b.k.a.c #13	ENSGT00950000182976.a.b.d #15	ENSGT00440000037417.A #16	ENSGT00940000158268.a #17	ENSGT00390000004456.c #19	ENSGT00940000156734.b.d.a.a #20	ENSGT00940000155391.a.b.b.g #22	ENSGT00390000001443.g #23	ENSGT00550000075025.a.a #24	ENSGT00390000007681.b.a.a.s.b.a ##27
River trout	DUPLICATION
River trout	MODERN SPECIES	21	ENSSTUG00000046673	ENSSTUG00000046599	ENSSTUG00000046575	guca1g (ENSSTUG00000046562)	ENSSTUG00000046516	ENSSTUG00000046509	ENSSTUG00000046496	KIAA1549L (ENSSTUG00000046459) #10	hipk3b (ENSSTUG00000044956) #12	cstf3 (ENSSTUG00000044239) #13	depdc7a (ENSSTUG00000044227) #15	QSER1 (ENSSTUG00000044213) #16	prrg4 (ENSSTUG00000044208) #17	eif3m (ENSSTUG00000044185) #19	wt1b (ENSSTUG00000044183) #20	pax6b (ENSSTUG00000044165) #22	elp4 (ENSSTUG00000044112) #23	immp1l (ENSSTUG00000044099) #24	ENSSTUG00000044095	ENSSTUG00000044092	ENSSTUG00000044087	taldo1 (ENSSTUG00000044076)	ENSSTUG00000043955	CRABP1 (ENSSTUG00000043937)	slc25a44b (ENSSTUG00000043930)	PSMA4 (ENSSTUG00000043904)	OAZ2 (ENSSTUG00000043891)	ENSSTUG00000043867	rbpms2b (ENSSTUG00000043809)	cpeb1b (ENSSTUG00000043475)	ENSSTUG00000043427
River trout	MODERN SPECIES	3	SNX1 (ENSSTUG00000029890)	csnk1g1 (ENSSTUG00000029446)	ENSSTUG00000029419	cpeb1b (ENSSTUG00000029274)	rbpms2b (ENSSTUG00000029225)	ENSSTUG00000029196	ENSSTUG00000029189	PSMA4 (ENSSTUG00000029163)	slc25a44b (ENSSTUG00000029150)	CRABP1 (ENSSTUG00000029135)	ENSSTUG00000028420	taldo1 (ENSSTUG00000028319)	ENSSTUG00000028310	ENSSTUG00000028306	ENSSTUG00000028295	pax6b (ENSSTUG00000027911) #22	RCN1 (ENSSTUG00000027892) #21	wt1b (ENSSTUG00000027833) #20	eif3m (ENSSTUG00000027790) #19	prrg4 (ENSSTUG00000027777) #17	QSER1 (ENSSTUG00000027726) #16	ENSSTUG00000027713	depdc7a (ENSSTUG00000027695) #15	ENSSTUG00000027686	cstf3 (ENSSTUG00000027245) #13	hipk3b (ENSSTUG00000025260) #12	KIAA1549L (ENSSTUG00000025094) #10	ENSSTUG00000025007	ENSSTUG00000024976	guca1g (ENSSTUG00000024959)	ENSSTUG00000024923
Atlantic salmon	MODERN SPECIES	18	U2A (ENSSSAG00000055526)	ENSSSAG00000042106	ENSSSAG00000090585	ENSSSAG00000092321	ENSSSAG00000118813	ENSSSAG00000061446 #10	HIPK3 (ENSSSAG00000109727) #12	cstf3 (ENSSSAG00000063183) #13	ENSSSAG00000109686	depdc7a (ENSSSAG00000073012) #15	ENSSSAG00000107426	QSER1 (ENSSSAG00000088263) #16	eif3m (ENSSSAG00000120807) #19	wt1b (ENSSSAG00000023980) #20	RCN1 (ENSSSAG00000106046) #21	pax6b (ENSSSAG00000036952) #22	elp4 (ENSSSAG00000092465) #23	immp1l (ENSSSAG00000004002) #24	mpped2a (ENSSSAG00000106136) ##27	ENSSSAG00000115797	ENSSSAG00000087634	ENSSSAG00000116047	ENSSSAG00000065246	ENSSSAG00000075948	ENSSSAG00000076000	ENSSSAG00000009605	slc25a44b (ENSSSAG00000104090)	psa4 (ENSSSAG00000099440)	ENSSSAG00000077048	RBPMS (ENSSSAG00000077072)	cpeb1b (ENSSSAG00000077105)
Salmoninae	ANCESTRAL SPECIES	1086													ENSGT00390000004456.d #19	ENSGT00940000156734.b.d.b #20	ENSGT01010000222360.D.b.c.a #21	ENSGT00940000155391.a.b.b.h #22	ENSGT00390000001443.h #23
Huchen	MODERN SPECIES	6858																pax6b (ENSHHUG00000006676) #22
Salmoninae_a	ANCESTRAL SPECIES	258													ENSGT00390000004456.d #19	ENSGT00940000156734.b.d.b #20	ENSGT01010000222360.D.b.c.a #21	ENSGT00940000155391.a.b.b.h #22	ENSGT00390000001443.h #23
Salmo	ANCESTRAL SPECIES	110													ENSGT00390000004456.d #19	ENSGT00940000156734.b.d.b #20	ENSGT01010000222360.D.b.d #21	ENSGT00940000155391.a.b.b.h #22	ENSGT01100000263521.a.a.b.a.a.d.b.b.b	ENSGT01100000263507.A	ENSGT00390000017361.w.a	ENSGT00940000155491.d.a	ENSGT00940000159422.a.b.a.a.a	ENSGT00940000156734.b.c #20	ENSGT00940000159422.a.b.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000157725.q.a	ENSGT00940000166520.i.b.d	ENSGT00940000158086.a.a.b.b	ENSGT00940000158086.a.a.b.a	ENSGT00940000155524.f	ENSGT00390000006548.a.b.a.b.a
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000105270	ENSSSAG00000009724	ENSSSAG00000061437	ENSSSAG00000064881	ENSSSAG00000087024	ENSSSAG00000091414	ENSSSAG00000015942	KIAA1549L (ENSSSAG00000118563) #10	HIPK3 (ENSSSAG00000061679) #12	cstf3 (ENSSSAG00000061719) #13	depdc7a (ENSSSAG00000009980) #15	QSER1 (ENSSSAG00000005641) #16	eif3m (ENSSSAG00000113858) #19	wt1b (ENSSSAG00000099229) #20	RCN1 (ENSSSAG00000109606) #21	pax6b (ENSSSAG00000009913) #22	elp4 (ENSSSAG00000111445) #23	immp1l (ENSSSAG00000052305) #24	mpped2a (ENSSSAG00000110120) ##27	ENSSSAG00000113325	ENSSSAG00000087820	ENSSSAG00000084273	ENSSSAG00000089039	ENSSSAG00000077027	slc25a44b (ENSSSAG00000077033)	psma4 (ENSSSAG00000091971)	ENSSSAG00000099295	ENSSSAG00000077067	RBPMS (ENSSSAG00000072843)	cpeb1b (ENSSSAG00000072480)	ENSSSAG00000105721
Oncorhynchus	ANCESTRAL SPECIES	227													ENSGT00390000004456.d #19	ENSGT00940000156734.b.d.b #20	ENSGT01010000222360.D.b.c.a #21	ENSGT00940000155391.a.b.b.h #22	ENSGT00390000001443.h #23
Oncorhynchus_a	ANCESTRAL SPECIES	381														ENSGT00940000156734.b.d.a.b #20	ENSGT01010000222360.D.b.c.a #21	ENSGT00940000155391.a.b.b.h #22	ENSGT00390000001443.g.a #23
Coho salmon	MODERN SPECIES	32	ENSOKIG00005047526	ENSOKIG00005047562	ENSOKIG00005047605	ENSOKIG00005047652	ENSOKIG00005047667	guca1g (ENSOKIG00005047698)	ENSOKIG00005047706	ENSOKIG00005047717 #10	cstf3 (ENSOKIG00005047736) #13	depdc7a (ENSOKIG00005047815) #15	QSER1 (ENSOKIG00005047824) #16	prrg4 (ENSOKIG00005047836) #17	eif3m (ENSOKIG00005047839) #19	wt1b (ENSOKIG00005047867) #20	RCN1 (ENSOKIG00005047926) #21	pax6b (ENSOKIG00005047942) #22	elp4 (ENSOKIG00005047988) #23	immp1l (ENSOKIG00005048001) #24	mpped2a (ENSOKIG00005048010) ##27	ENSOKIG00005048024	ENSOKIG00005048025	ENSOKIG00005048028	ENSOKIG00005048053	CRABP1 (ENSOKIG00005048126)	slc25a44b (ENSOKIG00005048140)	PSMA4 (ENSOKIG00005048148)	ENSOKIG00005048158	ENSOKIG00005048165	rbpms2b (ENSOKIG00005048170)	cpeb1b (ENSOKIG00005048186)	RPS17 (ENSOKIG00005048223)
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000062535	ENSOMYG00000051810	ENSOMYG00000033772	ENSOMYG00000033777	ENSOMYG00000033790	ENSOMYG00000061549	KIAA1549L (ENSOMYG00000020428) #10	HIPK3 (ENSOMYG00000020440) #12	cstf3 (ENSOMYG00000034267) #13	depdc7a (ENSOMYG00000034242) #15	QSER1 (ENSOMYG00000034331) #16	prrg4 (ENSOMYG00000047957) #17	eif3m (ENSOMYG00000034491) #19	wt1b (ENSOMYG00000050310) #20	RCN1 (ENSOMYG00000072716) #21	pax6b (ENSOMYG00000020469) #22	elp4 (ENSOMYG00000021230) #23	immp1l (ENSOMYG00000021274) #24	ENSOMYG00000072378	mpped2a (ENSOMYG00000072518) ##27	ENSOMYG00000020377	ENSOMYG00000021311	ENSOMYG00000021335	ENSOMYG00000021569	crabp1b (ENSOMYG00000052225)	slc25a44b (ENSOMYG00000021912)	ENSOMYG00000002105	ENSOMYG00000021945	ENSOMYG00000068055	cpeb1b (ENSOMYG00000001868)	ENSOMYG00000001633
Northern pike	MODERN SPECIES	1	snrpa1 (ENSELUG00000023898)	ENSELUG00000023862	ENSELUG00000027767	ENSELUG00000023845	ENSELUG00000026057	KIAA1549L (ENSELUG00000023667) #10	ENSELUG00000031037	hipk3b (ENSELUG00000023600) #12	cstf3 (ENSELUG00000023393) #13	depdc7a (ENSELUG00000023332) #15	QSER1 (ENSELUG00000023313) #16	prrg4 (ENSELUG00000023276) #17	eif3m (ENSELUG00000023267) #19	wt1b (ENSELUG00000023224) #20	RCN1 (ENSELUG00000001389) #21	pax6b (ENSELUG00000023162) #22	elp4 (ENSELUG00000023049) #23	immp1l (ENSELUG00000023040) #24	mpped2a (ENSELUG00000023009) ##27	ENSELUG00000022965	taldo1 (ENSELUG00000022943)	ENSELUG00000022896	slc25a44b (ENSELUG00000022784)	psma4 (ENSELUG00000022757)	ENSELUG00000000962	glceb (ENSELUG00000022679)	anp32a (ENSELUG00000022663)	CORO2B (ENSELUG00000022650)	itga11a (ENSELUG00000022609)	ENSELUG00000022589	calml4a (ENSELUG00000022560)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1493	zgc:101566 (ENSCMIG00000017734)	chst1 (ENSCMIG00000017735)	slc35c1 (ENSCMIG00000017736)	cry2 (ENSCMIG00000017807)	cstf3 (ENSCMIG00000017909) #13	TCP11L1 (ENSCMIG00000017981) #14	depdc7a (ENSCMIG00000017984) #15	ENSCMIG00000017988	QSER1 (ENSCMIG00000017989) #16	ENSCMIG00000017995 #17	ENSCMIG00000017997 #18	eif3m (ENSCMIG00000018018) #19	wt1a (ENSCMIG00000018077) #20	ENSCMIG00000018081	RCN1 (ENSCMIG00000018083) #21	ENSCMIG00000018190 #22	elp4 (ENSCMIG00000018323) #23	immp1l (ENSCMIG00000018332) #24	dnajc24 (ENSCMIG00000018333) #25	ENSCMIG00000018334	ENSCMIG00000018337	ENSCMIG00000018339	MPPED2 (ENSCMIG00000018343) #27	arl14ep (ENSCMIG00000018345) #28	MAPK8IP1 (ENSCMIG00000018349)	hipk3b (ENSCMIG00000018357) #12	KIAA1549L (ENSCMIG00000018366) #10	spon1a (ENSCMIG00000018390)	syt9b (ENSCMIG00000000189)	OLFML1 (ENSCMIG00000000202)	ENSCMIG00000000207
Elephant shark	MODERN SPECIES	1197																ENSCMIG00000001507 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000155391.b ##22
Euteleostomi	ANCESTRAL SPECIES	404								ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000158268.b ##17	ENSGT00440000037417.B ##16	ENSGT00940000160972	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22
Sarcopterygii	ANCESTRAL SPECIES	193	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000167404	ENSGT00940000158268.b ##17	ENSGT00440000037417.B ##16	ENSGT00940000160972	ENSGT00990000203615.a.a.a.a	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160569	ENSGT00390000014700.b.a.b	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22
Tetrapoda	ANCESTRAL SPECIES	103	ENSGT00940000160261	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00390000014700.b.a.b	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00990000203615.a.a.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT01030000235305	ENSGT00950000182841.a	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000153556.B	ENSGT00940000161285	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000167404	ENSGT00730000111459	ENSGT00940000158693.C
Anura	ANCESTRAL SPECIES	360																ENSGT00940000155391.b ##22	ENSGT00390000004520	ENSGT00950000183186.A	ENSGT00940000153561.b.a.b	ENSGT00940000161770
Frog	MODERN SPECIES	7	ENSXETG00000039733	igf3 (ENSXETG00000002876)	ENSXETG00000002872	ric8a (ENSXETG00000002868)	ENSXETG00000039807	irf3 (ENSXETG00000002863)	ENSXETG00000033198	SCAF1 (ENSXETG00000040627)	kcnj11 (ENSXETG00000002854)	rras (ENSXETG00000031241)	prr12 (ENSXETG00000002852) ##16	prrg2 (ENSXETG00000017647) ##17	chuk (ENSXETG00000017643)	znf484 (ENSXETG00000017642)	rcn3 (ENSXETG00000017641) ##21	ENSXETG00000032534 ##22	emc10 (ENSXETG00000024985)	ENSXETG00000044070	ENSXETG00000017638	clec11a (ENSXETG00000039670)	ENSXETG00000000210	ENSXETG00000035068	ENSXETG00000049198	syt3 (ENSXETG00000000204)	ENSXETG00000000199	cxcr3 (ENSXETG00000024989)	klk15 (ENSXETG00000016931)	ENSXETG00000043371	mgc147172 (ENSXETG00000031647)	ENSXETG00000040768	prss1.2 (ENSXETG00000041324)
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000026511	ENSLLEG00000026530	ENSLLEG00000026573	ENSLLEG00000026616	ENSLLEG00000026696	ENSLLEG00000026910	ENSLLEG00000026942	ENSLLEG00000027025	ENSLLEG00000027262	ENSLLEG00000027468	ENSLLEG00000027501	ENSLLEG00000027651	ENSLLEG00000027684	CXCR3 (ENSLLEG00000027728)	ENSLLEG00000027737	ENSLLEG00000027754 ##22	ENSLLEG00000027793	ENSLLEG00000027803	EMC10 (ENSLLEG00000027819)	ENSLLEG00000027870	ENSLLEG00000027904	CLEC11A (ENSLLEG00000027961)	SHANK1 (ENSLLEG00000027988)	ENSLLEG00000028075	ENSLLEG00000028091	SYT3 (ENSLLEG00000028100)	ENSLLEG00000028133	ENSLLEG00000028142	ENSLLEG00000028164	ENSLLEG00000028181	ENSLLEG00000028206
Amniota	ANCESTRAL SPECIES	52	ENSGT00390000009228.a	ENSGT00390000011694	ENSGT00940000157783	ENSGT00530000063801.b	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00940000158693.C	ENSGT00730000111459	ENSGT01050000244900.a.b	ENSGT00940000153222.a.b.a ##33	ENSGT00940000160292	ENSGT00940000164717	ENSGT00390000007725.B.c ##32	ENSGT00390000012322	ENSGT00940000161285	ENSGT00940000153556.B	ENSGT00390000018612.a.a	ENSGT01090000260003.a.b.a	ENSGT00940000163157	ENSGT00940000161485	ENSGT00950000182956.b.a
Sauria	ANCESTRAL SPECIES	38	ENSGT00530000063801.b	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT01100000267133	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000012322	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00730000111459
Lepidosauria	ANCESTRAL SPECIES	82								ENSGT00940000158268.b ##17	ENSGT00440000037417.B ##16	ENSGT00940000160972	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160569	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT01100000267133	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000012322	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00730000111459
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000164841	ENSGT00390000000221.B	ENSGT00940000163066	ENSGT00440000033408.b	ENSGT00390000014175	ENSGT00950000183492	ENSGT00940000154775.c.a	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000012322	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00730000111459	ENSGT00940000158693.C
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000164841	ENSGT00390000000221.B	ENSGT00940000163066	ENSGT00440000033408.b	ENSGT00390000014175	ENSGT00950000183492	ENSGT00940000154775.c.a	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000007725.B.c.g ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000168281	ENSGT00940000158693.C	ENSGT00940000159302
Common wall lizard	MODERN SPECIES	4	CCDC47 (ENSPMRG00000011007)	DDX42 (ENSPMRG00000010913)	ENSPMRG00000010798	ARL5C (ENSPMRG00000010764)	PLXDC1 (ENSPMRG00000010725)	FBXO47 (ENSPMRG00000010711)	ENSPMRG00000010706	LASP1NB (ENSPMRG00000010702)	LASP1 (ENSPMRG00000010695)	IRF3 (ENSPMRG00000010624)	ENSPMRG00000010586	RRAS (ENSPMRG00000015853)	ENSPMRG00000015798 ##17	NOSIP (ENSPMRG00000015774)	ENSPMRG00000015736 ##21	ENSPMRG00000015719 ##22	ENSPMRG00000015713	ENSPMRG00000015707	CPT1C (ENSPMRG00000014624)	TSKS (ENSPMRG00000014466)	AP2A1 (ENSPMRG00000013681)	ENSPMRG00000013593	MED25 (ENSPMRG00000013348)	ENSPMRG00000013301	ENSPMRG00000013293 ##32	ENSPMRG00000013290 ##32	ENSPMRG00000013287	SNRNP70 (ENSPMRG00000013280)	LIN7B (ENSPMRG00000013272) ##33	PPFIA3 (ENSPMRG00000013176)	ENSPMRG00000013145
Argentine black and white tegu	MODERN SPECIES	32	DDX42 (ENSSMRG00000021758)	ENSSMRG00000021755	ENSSMRG00000021752	ARL5C (ENSSMRG00000021750)	PLXDC1 (ENSSMRG00000021749)	FBXO47 (ENSSMRG00000021746)	LASP1 (ENSSMRG00000021745)	IRF3 (ENSSMRG00000021744)	SCAF1 (ENSSMRG00000021743)	RRAS (ENSSMRG00000021742)	PRR12 (ENSSMRG00000021741) ##16	ENSSMRG00000021740 ##17	NOSIP (ENSSMRG00000021739)	ENSSMRG00000021738 ##21	ENSSMRG00000021737	ENSSMRG00000021735 ##22	ENSSMRG00000021734	CPT1C (ENSSMRG00000021733)	TSKS (ENSSMRG00000021732)	ENSSMRG00000021731	AP2A1 (ENSSMRG00000021501)	FUZ (ENSSMRG00000021500)	MED25 (ENSSMRG00000021499)	ENSSMRG00000021492	NTF4 (ENSSMRG00000021490) ##32	ENSSMRG00000021489	SNRNP70 (ENSSMRG00000021488)	LIN7B (ENSSMRG00000021487) ##33	PPFIA3 (ENSSMRG00000021486)	ENSSMRG00000021485	ENSSMRG00000021484
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000156559	ENSGT00940000164841	ENSGT00390000000221.B	ENSGT00940000163066	ENSGT00440000033408.b	ENSGT00390000014175	ENSGT00950000183492	ENSGT00940000154775.c.a	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000012322	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00730000111459	ENSGT00940000158693.C
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000156559	ENSGT00940000164841	ENSGT00940000163066	ENSGT00440000033408.b	ENSGT00390000014175	ENSGT00950000183492	ENSGT00940000154775.c.a.l	ENSGT00940000160569.i	ENSGT00940000160569.j	ENSGT00950000183205.b.a.b.a.a.j	ENSGT00940000160972	ENSGT00440000037417.B.z ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000158693.C.l	ENSGT00940000168281	ENSGT00940000158693.C.k.b	ENSGT00940000159302
Elapidae_a	ANCESTRAL SPECIES	62	ENSGT00940000156559	ENSGT00940000164841	ENSGT00940000163066	ENSGT00440000033408.b	ENSGT00390000014175	ENSGT00950000183492	ENSGT00940000154775.c.a.l	ENSGT00940000160569.i	ENSGT00940000160569.j	ENSGT00950000183205.b.a.b.a.a.j	ENSGT00940000160972	ENSGT00440000037417.B.z.a ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000158693.C.k.a	ENSGT00940000158693.C.k.b	ENSGT00940000159302	ENSGT00940000153556.B
Acanthophiinae	ANCESTRAL SPECIES	59	ENSGT00940000156559	ENSGT00940000164841	ENSGT00940000163066	ENSGT00440000033408.b	ENSGT00390000014175	ENSGT00950000183492	ENSGT00940000154775.c.a.l	ENSGT00940000160569.i	ENSGT00940000160569.j	ENSGT00950000183205.b.a.b.a.a.j	ENSGT00940000160972	ENSGT00440000037417.B.z.a ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000161285	ENSGT00390000007725.B.c ##32	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT01050000244900.a.b	ENSGT00940000158693.C.k.a	ENSGT00940000158693.C.k.b	ENSGT00940000159302	ENSGT00940000153556.B
Eastern brown snake	MODERN SPECIES	49	DDX42 (ENSPTXG00000013816)	ENSPTXG00000013815	ARL5C (ENSPTXG00000013814)	PLXDC1 (ENSPTXG00000013813)	FBXO47 (ENSPTXG00000013812)	LASP1NB (ENSPTXG00000013811)	ENSPTXG00000016959	ENSPTXG00000016954	ENSPTXG00000016948	ENSPTXG00000016939	RRAS (ENSPTXG00000016935)	ENSPTXG00000016929 ##16	ENSPTXG00000016925 ##17	NOSIP (ENSPTXG00000016921)	ENSPTXG00000016914 ##21	ENSPTXG00000016905 ##22	ENSPTXG00000016898	CPT1C (ENSPTXG00000016882)	AP2A1 (ENSPTXG00000016872)	FUZ (ENSPTXG00000016866)	MED25 (ENSPTXG00000016863)	ENSPTXG00000016861	NTF4 (ENSPTXG00000016859) ##32	ENSPTXG00000016857	SNRNP70 (ENSPTXG00000016845)	LIN7B (ENSPTXG00000016841) ##33	PPFIA3 (ENSPTXG00000016831)	TRPM4 (ENSPTXG00000016830)	ENSPTXG00000016828	RUVBL2 (ENSPTXG00000016826)	ENSPTXG00000016824
Mainland tiger snake	MODERN SPECIES	29	HDAC5 (ENSNSUG00000005793)	CCDC47 (ENSNSUG00000005785)	DDX42 (ENSNSUG00000005343)	ENSNSUG00000005339	ARL5C (ENSNSUG00000005335)	PLXDC1 (ENSNSUG00000005330)	FBXO47 (ENSNSUG00000005329)	LASP1 (ENSNSUG00000005328)	ENSNSUG00000005327	SCAF1 (ENSNSUG00000005326)	RRAS (ENSNSUG00000005311)	ENSNSUG00000005306 ##16	ENSNSUG00000005304 ##17	NOSIP (ENSNSUG00000005303)	ENSNSUG00000005302 ##21	ENSNSUG00000005299 ##22	ENSNSUG00000005298	CPT1C (ENSNSUG00000005260)	AP2A1 (ENSNSUG00000005255)	FUZ (ENSNSUG00000005253)	MED25 (ENSNSUG00000005247)	ENSNSUG00000005182	NTF4 (ENSNSUG00000005181) ##32	ENSNSUG00000005180	SNRNP70 (ENSNSUG00000005179)	LIN7B (ENSNSUG00000005178) ##33	ENSNSUG00000005177	ENSNSUG00000005175	ENSNSUG00000005174	ENSNSUG00000005173	ENSNSUG00000005165
Blue-lipped sea krait	MODERN SPECIES	5964														NOSIP (ENSLLTG00000003314)	ENSLLTG00000003346 ##21	ENSLLTG00000003423 ##22
Indian cobra	MODERN SPECIES	337	DDX42 (ENSNNAG00000004829)	ENSNNAG00000004982	ARL5C (ENSNNAG00000005031)	PLXDC1 (ENSNNAG00000005068)	FBXO47 (ENSNNAG00000005442)	LASP1NB (ENSNNAG00000005476)	LASP1 (ENSNNAG00000005488)	ENSNNAG00000005502	ENSNNAG00000005518	SCAF1 (ENSNNAG00000005544)	RRAS (ENSNNAG00000005587)	ENSNNAG00000005675 ##16	ENSNNAG00000005698 ##17	NOSIP (ENSNNAG00000005749)	ENSNNAG00000005777 ##21	ENSNNAG00000005805 ##22	ENSNNAG00000005901	CPT1C (ENSNNAG00000005953)	AP2A1 (ENSNNAG00000006414)	FUZ (ENSNNAG00000010896)	MED25 (ENSNNAG00000010939)	ENSNNAG00000010982	NTF4 (ENSNNAG00000011015) ##32	ENSNNAG00000011044	SNRNP70 (ENSNNAG00000011160)	LIN7B (ENSNNAG00000011190) ##33	ENSNNAG00000011235	ENSNNAG00000011303	ENSNNAG00000011320	ENSNNAG00000011341	ENSNNAG00000011372
Lizard	MODERN SPECIES	5					FBXO47 (ENSACAG00000014090)	ENSACAG00000036563	LASP1 (ENSACAG00000036048)	ENSACAG00000037412	IRF3 (ENSACAG00000014027)	SCAF1 (ENSACAG00000043506)	RRAS (ENSACAG00000013955)	ENSACAG00000027532	ENSACAG00000040934 ##17	NOSIP (ENSACAG00000013921)	ENSACAG00000013873 ##21	ENSACAG00000013797 ##22	ENSACAG00000039373	ENSACAG00000035338	ENSACAG00000041038	CPT1C (ENSACAG00000013620)	ENSACAG00000013575	ENSACAG00000039655	AP2A1 (ENSACAG00000013405)	ENSACAG00000028153	ENSACAG00000013334	ENSACAG00000013327	ENSACAG00000031249	NTF4 (ENSACAG00000013323) ##32	kcna7 (ENSACAG00000037947)	SNRNP70 (ENSACAG00000040300)	LIN7B (ENSACAG00000013247) ##33
tuatara	MODERN SPECIES	120					ENSSPUG00000009068	PRMT1 (ENSSPUG00000009087)	ENSSPUG00000009115	BAX (ENSSPUG00000009144)	ENSSPUG00000009194 ##17	PRR12 (ENSSPUG00000009219) ##16	RRAS (ENSSPUG00000009262)	SCAF1 (ENSSPUG00000009311)	ENSSPUG00000009329	ENSSPUG00000009344	ENSSPUG00000009352	ENSSPUG00000009367 ##22	ENSSPUG00000009388
Archelosauria	ANCESTRAL SPECIES	43	ENSGT00530000063801.b	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000159302	ENSGT00940000158693.C	ENSGT01050000244900.a.b	ENSGT00940000153222.a.b.a ##33	ENSGT00940000160292	ENSGT00940000164717	ENSGT00390000007725.B.c ##32	ENSGT00940000161285	ENSGT00940000153556.B
Cryptodira	ANCESTRAL SPECIES	40	ENSGT00530000063801.b	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000159302	ENSGT00940000158693.C	ENSGT01050000244900.a.b	ENSGT00940000153222.a.b.a ##33	ENSGT00940000160292	ENSGT00940000164717	ENSGT00390000007725.B.c ##32	ENSGT00940000153556.B	ENSGT00390000018612.a.a
Testudinoidea	ANCESTRAL SPECIES	35	ENSGT00940000164903	ENSGT00940000158989	ENSGT00390000017397	ENSGT00940000165851	ENSGT00940000168900	ENSGT00940000154700	ENSGT00940000154318.B	ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000159302	ENSGT00940000158693.C	ENSGT01050000244900.a.b	ENSGT00940000153222.a.b.a ##33	ENSGT00940000160292	ENSGT00940000164717	ENSGT00390000007725.B.c ##32	ENSGT00940000153556.B	ENSGT00390000018612.a.a
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000155391.b ##22
Goode s thornscrub tortoise	MODERN SPECIES	44															ENSGEVG00005016299	ENSGEVG00005015897 ##22	CPT1C (ENSGEVG00005015572)	TSKS (ENSGEVG00005015399)	AP2A1 (ENSGEVG00005015340)
Emydidae	ANCESTRAL SPECIES	83									ENSGT00940000160569	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000160972	ENSGT00940000158268.b ##17	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT01070000256721	ENSGT00940000155391.b ##22	ENSGT00950000186131	ENSGT01060000248595.b.a.b.b	ENSGT00390000002611	ENSGT00950000182838.A.a.a	ENSGT00390000010727	ENSGT00940000160439	ENSGT00940000159302	ENSGT00940000158693.C	ENSGT01050000244900.a.b	ENSGT00940000153222.a.b.a ##33	ENSGT00940000160292	ENSGT00940000164717	ENSGT00940000153556.B	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a.c
painted turtle	MODERN SPECIES	1021	ATF5 (ENSCPBG00000006547)	TBC1D17 (ENSCPBG00000006560)	AKT1S1 (ENSCPBG00000006590)	ENSCPBG00000006631	ENSCPBG00000006637	PRMT1 (ENSCPBG00000006644)	ENSCPBG00000006651	ENSCPBG00000006655	IRF3 (ENSCPBG00000006661)	ENSCPBG00000006673	RRAS (ENSCPBG00000006694)	ENSCPBG00000006710 ##17	ENSCPBG00000006720	ENSCPBG00000006743 ##21	ENSCPBG00000006756	ENSCPBG00000006771 ##22	ENSCPBG00000006791	CPT1C (ENSCPBG00000006801)	TSKS (ENSCPBG00000006818)	AP2A1 (ENSCPBG00000006964)	FUZ (ENSCPBG00000007582)	MED25 (ENSCPBG00000007588)	ENSCPBG00000007599	PNKP (ENSCPBG00000007612)	ENSCPBG00000007646	ENSCPBG00000007658	ENSCPBG00000007727	ENSCPBG00000007905	ENSCPBG00000008056	ENSCPBG00000008177
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000155391.b ##22
Platypus	MODERN SPECIES	1	AP2A1 (ENSOANG00000042299)	TSKS (ENSOANG00000047454)	CPT1C (ENSOANG00000045910)	ENSOANG00000051300	PRMT1 (ENSOANG00000037078)	ENSOANG00000042777	ENSOANG00000046499	ENSOANG00000040732	RRAS (ENSOANG00000038998)	ENSOANG00000041740 ##16	ENSOANG00000037579 ##16	ENSOANG00000037549	NOSIP (ENSOANG00000049297)	RCN3 (ENSOANG00000004103) ##21	ENSOANG00000050286	ENSOANG00000038288 ##22	TRPM4 (ENSOANG00000005782)	ENSOANG00000040618	PPFIA3 (ENSOANG00000000395)	ENSOANG00000048566 ##33	SNRNP70 (ENSOANG00000005213)	KCNA7 (ENSOANG00000005212)	NTF4 (ENSOANG00000039091) ##32	ENSOANG00000049948	RUVBL2 (ENSOANG00000051054)	GYS1 (ENSOANG00000004219)	FTL (ENSOANG00000045435)	ENSOANG00000047614	BAX (ENSOANG00000039128)	ENSOANG00000002021	ENSOANG00000013934
Actinopterygii	ANCESTRAL SPECIES	339														ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00940000154700	ENSGT00950000182838.A.a.a	ENSGT00940000167194	ENSGT00940000160972	ENSGT00440000037417.B ##16	ENSGT00940000158268.b ##17
Neopterygii	ANCESTRAL SPECIES	319														ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00940000160292	ENSGT00940000153222.a.b.a ##33	ENSGT00940000158268.b ##17	ENSGT00440000037417.B ##16	ENSGT00940000160569
Osteoglossocephalai	ANCESTRAL SPECIES	83	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000154700	ENSGT00950000182838.A.a.a	ENSGT00940000167194	ENSGT00940000160972	ENSGT00940000158268.b ##17	ENSGT00440000037417.B.a ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183205.b.a.b.a.a	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00940000165867.B	ENSGT00940000167070	ENSGT00390000015278	ENSGT00940000166574	ENSGT00390000001557	ENSGT00940000164039.b.b	ENSGT00940000159512	ENSGT00940000166391	ENSGT00940000160215	ENSGT00940000157421
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	216	ENSGT00940000167630	ENSGT00940000166481.h	ENSGT00390000002069	ENSGT00940000160609.e	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000164511.C.r.b	ENSGT00950000182818.A.n	ENSGT00940000154700.d	ENSGT00950000182838.A.a.a.h	ENSGT00940000158268.b ##17	ENSGT00440000037417.B.a.l ##16	ENSGT00940000160569	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000158693.A	ENSGT00390000015505	ENSGT00940000155391.b.a ##22	ENSGT00940000154318.B	ENSGT00940000165867.A	ENSGT00940000166574.a	ENSGT00940000164039.a	ENSGT00940000164039.b.b
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015015694	ENSSFOG00015021033	dnaaf3 (ENSSFOG00015028239)	ENSSFOG00015021050	ENSSFOG00015021063	ENSSFOG00015021108	prl (ENSSFOG00015021124)	prmt1 (ENSSFOG00015021136)	AP2A1 (ENSSFOG00015021159)	prrg2 (ENSSFOG00015021179) ##17	PRR12 (ENSSFOG00015021192) ##16	irf3 (ENSSFOG00015021223)	ENSSFOG00015021240	trpm4a (ENSSFOG00015021283)	nosip (ENSSFOG00015021355)	pax10 (ENSSFOG00015029735) ##22	ENSSFOG00015021391	ENSSFOG00015021407	ENSSFOG00015021448	ENSSFOG00015026156	ENSSFOG00015021472	ENSSFOG00015021511	ENSSFOG00015032809	ENSSFOG00015021892	ENSSFOG00015028051	aldoaa (ENSSFOG00015021877)	ppp4ca (ENSSFOG00015021844)	eif3c (ENSSFOG00015021823)	zgc:92040 (ENSSFOG00015021814)	tbx6 (ENSSFOG00015021809)	mapk3 (ENSSFOG00015027966)
P. kingsleyae	MODERN SPECIES	22			ENSPKIG00000007186	ENSPKIG00000007073	ENSPKIG00000007039	ENSPKIG00000006597	prmt1 (ENSPKIG00000006428)	AP2A1 (ENSPKIG00000006280)	ENSPKIG00000006220 ##17	PRR12 (ENSPKIG00000006170) ##16	irf3 (ENSPKIG00000006099)	ENSPKIG00000005962	trpm4a (ENSPKIG00000005865)	ENSPKIG00000005849	nosip (ENSPKIG00000005790)	pax10 (ENSPKIG00000005751) ##22	ENSPKIG00000005725	ENSPKIG00000005705	ENSPKIG00000005686	ENSPKIG00000005677	cbl (ENSPKIG00000005649)	ccdc153 (ENSPKIG00000005633)	GRIK4 (ENSPKIG00000005602)	ARHGEF12 (ENSPKIG00000005443)	tlcd5a (ENSPKIG00000005367)	POU2F3 (ENSPKIG00000005310)	OAF (ENSPKIG00000005284)	HEPACAM (ENSPKIG00000005249)	ENSPKIG00000005216	SPA17 (ENSPKIG00000005201)	ENSPKIG00000005187
Osteoglossiformes	ANCESTRAL SPECIES	187	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.r.a	ENSGT00980000198607	ENSGT00950000182818.A.m	ENSGT00940000154700.c	ENSGT00950000182838.A.a.a.g	ENSGT00940000167194	ENSGT00940000160972	ENSGT00440000037417.B.a.k ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000158693.C	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b.b ##22	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00940000165867.B	ENSGT00940000167070	ENSGT00390000015278	ENSGT00940000166574.b	ENSGT00390000001557	ENSGT00940000159512	ENSGT00940000166391	ENSGT00940000160215	ENSGT00940000157421	ENSGT00940000157290
Asian bonytongue	MODERN SPECIES	23	tnnt1 (ENSSFOG00015005622)	pih1d1 (ENSSFOG00015005655)	ENSSFOG00015029154	ENSSFOG00015032473	prl (ENSSFOG00015005709)	prmt1 (ENSSFOG00015005748)	AP2A1 (ENSSFOG00015005800)	ENSSFOG00015005892	rras (ENSSFOG00015005953)	PRR12 (ENSSFOG00015024563) ##16	ENSSFOG00015005993	ENSSFOG00015031511	TRPM4 (ENSSFOG00015006159)	ENSSFOG00015024852	rcn3 (ENSSFOG00015030940) ##21	ENSSFOG00015032063 ##22	tspan4b (ENSSFOG00015006281)	ENSSFOG00015029212	ENSSFOG00015006309	ENSSFOG00015006326	srrm2 (ENSSFOG00015027130)	thoc6 (ENSSFOG00015006385)	ENSSFOG00015006414	rnf25 (ENSSFOG00015026146)	kat8 (ENSSFOG00015006636)	mapk7 (ENSSFOG00015006670)	vkorc1 (ENSSFOG00015024706)	fus (ENSSFOG00015030804)	zgc:100868 (ENSSFOG00015006793)	zgc:100868 (ENSSFOG00015007389)	ATP6V0C (ENSSFOG00015031277)
Clupeocephala	ANCESTRAL SPECIES	211	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16
Otomorpha	ANCESTRAL SPECIES	213	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000164679.db	ENSGT01060000248786	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16
Otophysi	ANCESTRAL SPECIES	63	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163852.c.a.b.a.a.g	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.e	ENSGT00940000164039.a.f	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00530000063688.b.nb.a	ENSGT01030000234570.d.b.a.b.b.a.b	ENSGT00940000166534	ENSGT00940000167352	ENSGT00730000111991	ENSGT01090000260598
Cyprinoidei	ANCESTRAL SPECIES	29	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb.g	ENSGT00940000154838.B.i.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.e	ENSGT00940000164039.a.f	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00940000154380.a.b	ENSGT00390000014700.b.a.b.b.b.a	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00530000063688.b.nb.a	ENSGT01030000234570.d.b.a.b.b.a.b	ENSGT00940000166534	ENSGT00940000154363.B	ENSGT01090000260598
Zebrafish	MODERN SPECIES	18	ENSDARG00000077545	si:dkey-16p21.8 (ENSDARG00000096849)	prl (ENSDARG00000037946)	prmt1 (ENSDARG00000010246)	AP2A1 (ENSDARG00000054320)	ENSDARG00000094836	rras (ENSDARG00000006553)	prrg2 (ENSDARG00000087193) ##17	PRR12 (ENSDARG00000075849) ##16	ENSDARG00000017579	ENSDARG00000054010	trpm4a (ENSDARG00000059993)	ENSDARG00000096257	nosip (ENSDARG00000037958)	rcn3 (ENSDARG00000037961) ##21	pax10 (ENSDARG00000053364) ##22	ENSDARG00000090625	tspan4b (ENSDARG00000070391)	ENSDARG00000004459	ENSDARG00000096331	ENSDARG00000110163	ENSDARG00000088283	ENSDARG00000077290	srrm2 (ENSDARG00000037965)	thoc6 (ENSDARG00000037966)	ENSDARG00000037967	rnf25 (ENSDARG00000027182)	kat8 (ENSDARG00000027187)	ENSDARG00000027196	fus (ENSDARG00000037968)	ENSDARG00000060030
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155391.b.c ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155391.b.c ##22
Golden-line barbel	MODERN SPECIES	490	prl (ENSSGRG00000037313)	prl (ENSSGRG00000037318)	prmt1 (ENSSGRG00000037335)	AP2A1 (ENSSGRG00000037418)	ENSSGRG00000041088	rras (ENSSGRG00000041089)	prrg2 (ENSSGRG00000041091) ##17	ENSSGRG00000041093 ##16	ENSSGRG00000041097	ENSSGRG00000041112	ENSSGRG00000041154	trpm4a (ENSSGRG00000041159)	ENSSGRG00000041164	nosip (ENSSGRG00000041169)	rcn3 (ENSSGRG00000041258) ##21	pax10 (ENSSGRG00000041323) ##22	ENSSGRG00000041325	tspan4b (ENSSGRG00000041327)	ENSSGRG00000041330	ENSSGRG00000041331	srrm2 (ENSSGRG00000041332)	ENSSGRG00000041362	rnf25 (ENSSGRG00000041363)	kat8 (ENSSGRG00000041366)	ENSSGRG00000041513	fus (ENSSGRG00000041515)	ENSSGRG00000041519	hsd3b7 (ENSSGRG00000041527)	tbc1d10b (ENSSGRG00000041564)	mylpfa (ENSSGRG00000041569)	pheta2 (ENSSGRG00000041570)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.h.a	ENSGT00940000154076.C.d	ENSGT00940000156854.s.c	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i.a.b	ENSGT00940000157510.f	ENSGT00940000167542	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00940000154838.B.i.a.b	ENSGT00940000163852.c.a.b.a.b.c.b	ENSGT00940000157421	ENSGT00940000160215.a.b	ENSGT00940000166391.o.a.b	ENSGT00940000155391.b.d.a.a ##22	ENSGT00940000165867.A.c	ENSGT00940000164039.a.e.a	ENSGT00940000164039.a.e.b	ENSGT00940000164039.a.f.h	ENSGT00940000168281	ENSGT00940000158693.B.h	ENSGT00940000164039.a.f.g.b	ENSGT00940000158693.B.g	ENSGT01090000260230.a	ENSGT00390000014700.b.a.b.b.b.a.b	ENSGT00940000160569.d	ENSGT00440000037417.B.b.d ##16	ENSGT00940000164511.C.q.d.b.a	ENSGT00530000063688.b.nb.a.b	ENSGT00940000155494.j.n.b.b
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.h.a	ENSGT00940000154076.C.d	ENSGT00940000156854.s.c	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i.a.b	ENSGT00940000157510.f	ENSGT00940000167542	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00940000154838.B.i.a.b	ENSGT00940000163852.c.a.b.a.b.c.b	ENSGT00940000157421.c	ENSGT00940000160215.a.b	ENSGT00940000166391.o.a.b	ENSGT00940000155391.b.d.a.a ##22	ENSGT00940000165867.A.c	ENSGT00940000164039.a.e.a.a	ENSGT00940000164039.a.e.b	ENSGT00940000164039.a.f.h	ENSGT00940000168281	ENSGT00940000158693.B.h	ENSGT00940000164039.a.f.g.b	ENSGT00940000158693.B.g	ENSGT00940000154380.a.b	ENSGT00390000014700.b.a.b.b.b.a.b	ENSGT00940000160569.d	ENSGT00440000037417.B.b.d ##16	ENSGT00940000164511.C.q.d.b.a	ENSGT00530000063688.b.nb.a.b	ENSGT00940000155494.j.m
Common carp reference	MODERN SPECIES	25	ENSCCRG00000010906	ENSCCRG00000012043	foxk2a (ENSCCRG00000046915)	ENSCCRG00000070681	wdr45b (ENSCCRG00000057028)	mrpl58 (ENSCCRG00000059847)	ENSCCRG00000060040	ENSCCRG00000035449	ENSCCRG00000069160	ENSCCRG00000023568	ENSCCRG00000023589	vkorc1 (ENSCCRG00000027759)	mapk7 (ENSCCRG00000067371)	zgc:92313 (ENSCCRG00000082478)	ENSCCRG00000056314	ENSCCRG00000027768 ##22	ENSCCRG00000069593	ca15b (ENSCCRG00000057005)	ca15b (ENSCCRG00000080452)	ENSCCRG00000065511	ENSCCRG00000047081	ENSCCRG00000078723	ENSCCRG00000056525	irf3 (ENSCCRG00000030888)	ENSCCRG00000077074 ##16	ENSCCRG00000030861	ENSCCRG00000064582	ENSCCRG00000075659	scn4aa (ENSCCRG00000052355)	ENSCCRG00000053457	ENSCCRG00000068144
Goldfish	MODERN SPECIES	3	DNAH17 (ENSCARG00000033789)	SHISA6 (ENSCARG00000033257)	ENSCARG00000033247	foxk2a (ENSCARG00000033024)	wdr45b (ENSCARG00000032942)	mrpl58 (ENSCARG00000032918)	ENSCARG00000032912	ENSCARG00000032887	ENSCARG00000032870	ENSCARG00000032860	ENSCARG00000032852	ENSCARG00000032806	vkorc1 (ENSCARG00000032791)	mapk7 (ENSCARG00000032778)	zgc:92313 (ENSCARG00000032737)	ENSCARG00000032719 ##22	ENSCARG00000032701	ENSCARG00000032631	ENSCARG00000032611	ENSCARG00000032605	trpm4b.2 (ENSCARG00000032260)	ENSCARG00000032208	irf3 (ENSCARG00000032175)	PRR12 (ENSCARG00000032163) ##16	ENSCARG00000032101	ENSCARG00000031948	ENSCARG00000031888	zgc:163073 (ENSCARG00000031850)	scn4aa (ENSCARG00000031600)	ENSCARG00000031556	ifnphi4 (ENSCARG00000031533)
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00390000016049.g	ENSGT01010000222313.A.b.b.a.a.b.b	ENSGT00940000158525.t	ENSGT00940000159991.B.c	ENSGT00940000160506.a.c	ENSGT00940000160732.b	ENSGT00390000006265.a	ENSGT00390000017900.w	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163009.b.a.b.d	ENSGT00950000182987.c.a.a.lb.g.a	ENSGT00940000154838.B.i.b.b	ENSGT00940000160215.b	ENSGT00940000166391.o.a.a	ENSGT00940000155391.b.d.a.b ##22	ENSGT00940000165867.A.d	ENSGT00940000164039.a.f.g.a.a	ENSGT01090000260230.b	ENSGT00390000014700.b.a.b.b.b.a.a	ENSGT00940000160569.c	ENSGT00440000037417.B.b.c ##16	ENSGT00940000164511.C.q.d.b.b	ENSGT00980000198607	ENSGT00530000063688.b.nb.a.a	ENSGT00940000155494.j.n.b.a	ENSGT01100000264681	ENSGT01030000234570.d.b.a.b.b.a.b.b	ENSGT00940000166534	ENSGT00940000167352.a	ENSGT00730000111991
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00390000016262	ENSGT00940000159871.b.a.a.d	ENSGT00390000016049.g	ENSGT00940000158525.t	ENSGT00940000159991.B.c	ENSGT00940000160506.a.c	ENSGT00940000160732.b	ENSGT00390000006265.a	ENSGT00390000017900.w	ENSGT00930000151040.a.a.a	ENSGT00950000182987.c.a.a.lb.g.a	ENSGT00940000154838.B.i.b.b	ENSGT00940000157421.d	ENSGT00940000160215.b	ENSGT00940000166391.o.a.a	ENSGT00940000155391.b.d.a.b ##22	ENSGT00940000165867.A.d	ENSGT00940000164039.a.e.a.b	ENSGT00940000164039.a.f.g.a.b	ENSGT00940000162972.f	ENSGT00730000111459.b	ENSGT01090000260230.b	ENSGT00390000014700.b.a.b.b.b.a.a	ENSGT00940000160569.c	ENSGT00440000037417.B.b.c ##16	ENSGT00940000164511.C.q.d.b.b	ENSGT00980000198607	ENSGT00530000063688.b.nb.a.a	ENSGT00940000155494.j.n.b.a	ENSGT01100000264681	ENSGT01030000234570.d.b.a.b.b.a.b.b
Common carp reference	MODERN SPECIES	44	ENSCCRG00000064007	ENSCCRG00000018179	ENSCCRG00000061172	cabp5a (ENSCCRG00000003035)	nif3l1 (ENSCCRG00000003053)	ENSCCRG00000012472	tbx6 (ENSCCRG00000012493)	eif3c (ENSCCRG00000012533)	ppp4cb (ENSCCRG00000059069)	aldoab (ENSCCRG00000064750)	ENSCCRG00000079323	ENSCCRG00000057221	ENSCCRG00000018517	mapk7 (ENSCCRG00000027734)	zgc:92313 (ENSCCRG00000027746)	ENSCCRG00000081338 ##22	ENSCCRG00000039173	ca15b (ENSCCRG00000039175)	ENSCCRG00000039182	ENSCCRG00000039556	ENSCCRG00000064102	ENSCCRG00000039552	ENSCCRG00000064497	ENSCCRG00000068986	ENSCCRG00000044322	irf3 (ENSCCRG00000025004)	ENSCCRG00000025015 ##16	ENSCCRG00000030824	ENSCCRG00000057904	KANSL1 (ENSCCRG00000079899)	ENSCCRG00000027024
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	22	ENSGT00940000164511.C.q.d.a.a	ENSGT00950000182818.A.u	ENSGT00940000154700.k	ENSGT00950000182838.A.a.a.m.a	ENSGT00940000167194	ENSGT00940000160972.c	ENSGT00940000158268.b.c ##17	ENSGT00440000037417.B.a.i ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00970000194335.a.b	ENSGT00950000183205.b.a.b.a.a.l	ENSGT00940000158693.A.b	ENSGT01040000240919.d	ENSGT00390000015505.a.a	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b.d.b.a ##22	ENSGT00940000154318.B.b	ENSGT00940000165851.b	ENSGT00940000171190	ENSGT00940000166574.c	ENSGT00390000001557.d	ENSGT00940000166391.o.b.b	ENSGT00940000157290.hb	ENSGT00940000162290.ab	ENSGT00940000160236.d	ENSGT00940000159805.e	ENSGT00940000159038.a.b.a.a	ENSGT00940000164923.a.b.a	ENSGT00390000012483.i	ENSGT00520000055626.b.l	ENSGT00630000091000
Cyprininae_a	ANCESTRAL SPECIES	54	ENSGT00950000182818.A.u	ENSGT00940000154700.k	ENSGT00950000182838.A.a.a.m.a	ENSGT00950000182838.A.a.a.n	ENSGT00940000167194	ENSGT00940000160972.c	ENSGT00940000158268.b.c ##17	ENSGT00440000037417.B.a.i ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00970000194335.a.b	ENSGT00950000183205.b.a.b.a.a.l	ENSGT00940000158693.A.b	ENSGT01040000240919.d	ENSGT00390000015505.a.a	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b.d.b.a ##22	ENSGT00940000154318.B.b	ENSGT00940000165851.b	ENSGT00390000014595.a.b.h	ENSGT00940000165867.B.b	ENSGT00940000167070.d	ENSGT00390000015278.n	ENSGT00940000166574.c	ENSGT00390000001557.d	ENSGT00940000166391.o.b.b	ENSGT00940000157290.hb	ENSGT00940000162290.ab	ENSGT00940000160236.d	ENSGT00940000159805.e	ENSGT00940000159038.a.b.a.a	ENSGT00940000164923.a.b.a.a
Common carp reference	MODERN SPECIES	1	ENSCCRG00000065959	ENSCCRG00000017212	ENSCCRG00000076554	ENSCCRG00000063545	prmt1 (ENSCCRG00000053120)	ENSCCRG00000002072	ENSCCRG00000057760	prrg2 (ENSCCRG00000001919) ##17	ENSCCRG00000074234 ##16	ENSCCRG00000056333	ENSCCRG00000067038	trpm4a (ENSCCRG00000081298)	ENSCCRG00000077824	nosip (ENSCCRG00000030912)	rcn3 (ENSCCRG00000018568) ##21	pax10 (ENSCCRG00000018561) ##22	ENSCCRG00000057407	ENSCCRG00000052987	srrm2 (ENSCCRG00000067112)	thoc6 (ENSCCRG00000018421)	ENSCCRG00000071800	rnf25 (ENSCCRG00000018157)	fus (ENSCCRG00000065074)	ENSCCRG00000054069	hsd3b7 (ENSCCRG00000017958)	tbc1d10b (ENSCCRG00000018014)	mylpfa (ENSCCRG00000017709)	pheta2 (ENSCCRG00000075166)	ENSCCRG00000015331	ENSCCRG00000071035	rusf1 (ENSCCRG00000017991)
Goldfish	MODERN SPECIES	20	ENSCARG00000024400	rpl28 (ENSCARG00000024408)	ENSCARG00000024414	ENSCARG00000024438	pdcl (ENSCARG00000024620)	ENSCARG00000024646	ENSCARG00000024662	ENSCARG00000024673	ENSCARG00000024680 ##16	ENSCARG00000024733	ENSCARG00000024831	trpm4a (ENSCARG00000024879)	ENSCARG00000024966	nosip (ENSCARG00000024973)	rcn3 (ENSCARG00000025005) ##21	pax10 (ENSCARG00000025015) ##22	ENSCARG00000025027	tspan4b (ENSCARG00000025037)	ENSCARG00000025059	ENSCARG00000025118	rnf25 (ENSCARG00000025152)	kat8 (ENSCARG00000025283)	ENSCARG00000025591	fus (ENSCARG00000025604)	ENSCARG00000025627	tbc1d10b (ENSCARG00000025652)	mylpfa (ENSCARG00000025685)	pheta2 (ENSCARG00000025714)	cd2bp2 (ENSCARG00000025721)	ENSCARG00000025730	rusf1 (ENSCARG00000025740)
Cyprininae	ANCESTRAL SPECIES	548																ENSGT00940000155391.b.d.b.b ##22	ENSGT00940000154318.B.a	ENSGT00940000165851.a	ENSGT00390000014595.a.b	ENSGT00940000165867.B.a	ENSGT00940000167070.c	ENSGT00390000015278.m	ENSGT00940000166574.d	ENSGT00390000001557.c	ENSGT00940000159512	ENSGT00940000166391.o.b.a	ENSGT00940000157290.ib	ENSGT00940000162290.`b	ENSGT00940000160236.c	ENSGT00940000159805.f	ENSGT00940000159038.a.b.a.b
Cyprininae_a	ANCESTRAL SPECIES	253																ENSGT00940000155391.b.d.b.b ##22	ENSGT00940000154318.B.a	ENSGT00940000165851.a	ENSGT00390000014595.a.b.g	ENSGT00940000165867.B.a	ENSGT00940000167070.c	ENSGT00390000015278.m	ENSGT00940000166574.d	ENSGT00390000001557.c	ENSGT00940000159512	ENSGT00940000166391.o.b.a	ENSGT00940000157290.ib	ENSGT00940000162290.`b	ENSGT00940000160236.c	ENSGT00940000159805.f	ENSGT00940000159038.a.b.a.b
Common carp reference	MODERN SPECIES	3	syt5a (ENSCCRG00000041410)	tnnt1 (ENSCCRG00000041423)	ENSCCRG00000061134	pih1d1 (ENSCCRG00000020730)	ENSCCRG00000019205	ENSCCRG00000082324	prl (ENSCCRG00000019084)	prmt1 (ENSCCRG00000072979)	ENSCCRG00000049726	ENSCCRG00000066330 ##16	ENSCCRG00000000319	ENSCCRG00000000300	trpm4a (ENSCCRG00000000199)	nosip (ENSCCRG00000082623)	rcn3 (ENSCCRG00000030906) ##21	pax10 (ENSCCRG00000058694) ##22	ENSCCRG00000030893	tspan4b (ENSCCRG00000030887)	ENSCCRG00000062436	srrm2 (ENSCCRG00000075317)	thoc6 (ENSCCRG00000018542)	ENSCCRG00000018412	rnf25 (ENSCCRG00000080225)	kat8 (ENSCCRG00000043309)	ENSCCRG00000063566	fus (ENSCCRG00000043288)	ENSCCRG00000057657	hsd3b7 (ENSCCRG00000018139)	tbc1d10b (ENSCCRG00000069567)	mylpfa (ENSCCRG00000058291)	pheta2 (ENSCCRG00000053574)
Goldfish	MODERN SPECIES	22	ENSCARG00000003076	ENSCARG00000002958	prl (ENSCARG00000002943)	prmt1 (ENSCARG00000002648)	AP2A1 (ENSCARG00000001111)	rras (ENSCARG00000000899)	prrg2 (ENSCARG00000000893) ##17	ENSCARG00000000865 ##16	ENSCARG00000000849	ENSCARG00000000839	trpm4a (ENSCARG00000000770)	ENSCARG00000000743	ENSCARG00000000736	nosip (ENSCARG00000000721)	rcn3 (ENSCARG00000000697) ##21	pax10 (ENSCARG00000000677) ##22	ENSCARG00000000669	tspan4b (ENSCARG00000000663)	ENSCARG00000000620	srrm2 (ENSCARG00000000595)	thoc6 (ENSCARG00000000566)	ENSCARG00000000544	rnf25 (ENSCARG00000000510)	ENSCARG00000000491	ENSCARG00000000484	hsd3b7 (ENSCARG00000000474)	tbc1d10b (ENSCARG00000000428)	mylpfa (ENSCARG00000000401)	pheta2 (ENSCARG00000000393)	cd2bp2 (ENSCARG00000000391)	ENSCARG00000000379
Characiphysae	ANCESTRAL SPECIES	72	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732.c	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.e	ENSGT00940000164039.a.f	ENSGT00730000111459	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.C.p.a	ENSGT00530000063688.b.nb.a	ENSGT00940000155494.j	ENSGT01030000234570.d.b.a.b.b.a.b	ENSGT01090000260598
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	4	DCXR (ENSIPUG00000017215)	lrrc45 (ENSIPUG00000017166)	CABP5 (ENSIPUG00000017119)	nif3l1 (ENSIPUG00000017090)	gdpd3 (ENSIPUG00000017046)	tbx6 (ENSIPUG00000017013)	prodh2 (ENSIPUG00000016967)	eif3c (ENSIPUG00000016878)	ppp4c (ENSIPUG00000016847)	ENSIPUG00000016839	Aldoa (ENSIPUG00000016805)	ENSIPUG00000016728	vkorc1 (ENSIPUG00000016700)	mapk7 (ENSIPUG00000016681)	zgc:92313 (ENSIPUG00000016664)	ENSIPUG00000016645 ##22	ENSIPUG00000016628	ENSIPUG00000016559	ENSIPUG00000016541	ENSIPUG00000016529	CA4 (ENSIPUG00000016480)	ENSIPUG00000016467	trpm4b.2 (ENSIPUG00000016410)	ENSIPUG00000016399	IRF3 (ENSIPUG00000016345)	ENSIPUG00000016196 ##16	ENSIPUG00000016130	ENSIPUG00000016113	ENSIPUG00000016081	ENSIPUG00000015774	zgc:163073 (ENSIPUG00000015634)
Channel catfish	MODERN SPECIES	11	prl (ENSIPUG00000006425)	ENSIPUG00000006450	prmt1 (ENSIPUG00000006472)	AP2A1 (ENSIPUG00000006589)	ENSIPUG00000006683	rras (ENSIPUG00000006702)	Prrg2 (ENSIPUG00000006739) ##17	PRR12 (ENSIPUG00000006794) ##16	ENSIPUG00000006814	ENSIPUG00000006849	scaf1 (ENSIPUG00000006965)	trpm4a (ENSIPUG00000006995)	ENSIPUG00000007036	nosip (ENSIPUG00000007055)	rcn3 (ENSIPUG00000007133) ##21	pax10 (ENSIPUG00000007187) ##22	ENSIPUG00000007192	ENSIPUG00000007202	rnf25 (ENSIPUG00000007223)	KAT8 (ENSIPUG00000007291)	ENSIPUG00000007342	setd1a (ENSIPUG00000007413)	hsd3b7 (ENSIPUG00000007436)	ENSIPUG00000007452	neu3.5 (ENSIPUG00000007468)	tspan4b (ENSIPUG00000007479)	ENSIPUG00000007492	srrm2 (ENSIPUG00000007551)	thoc6 (ENSIPUG00000007615)	SYT17 (ENSIPUG00000007642)	clec19a (ENSIPUG00000007735)
Characiphysae_b	ANCESTRAL SPECIES	80	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732.c	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.e	ENSGT00940000164039.a.f	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.C.p.a	ENSGT00530000063688.b.nb.a	ENSGT00940000155494.j	ENSGT01030000234570.d.b.a.b.b.a.b	ENSGT00940000166534	ENSGT00940000167352
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	1078												ENSEEEG00000020013	vkorc1 (ENSEEEG00000020052)	mapk7 (ENSEEEG00000020076)	zgc:92313 (ENSEEEG00000020227)	ENSEEEG00000020229 ##22	ENSEEEG00000020230	ca15b (ENSEEEG00000020233)	zgc:153760 (ENSEEEG00000020239)
Electric eel	MODERN SPECIES	245											ENSEEEG00000013731	ENSEEEG00000013732	ENSEEEG00000013733	nosip (ENSEEEG00000013735)	rcn3 (ENSEEEG00000013739) ##21	pax10 (ENSEEEG00000013749) ##22	ENSEEEG00000013751	tspan4b (ENSEEEG00000013753)	ENSEEEG00000013755	ENSEEEG00000013756	ENSEEEG00000013758	ENSEEEG00000013760	thoc6 (ENSEEEG00000013761)	ENSEEEG00000013768	rnf25 (ENSEEEG00000013770)	kat8 (ENSEEEG00000013771)	ENSEEEG00000013778	ENSEEEG00000013831	ENSEEEG00000013832	ENSEEEG00000013855	ENSEEEG00000013854
Characoidei	ANCESTRAL SPECIES	70	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732.c	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.e	ENSGT00940000164039.a.f	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00530000063688.b.nb.a	ENSGT00940000155494.j	ENSGT01030000234570.d.b.a.b.b.a.b	ENSGT00940000166534	ENSGT00940000167352	ENSGT01090000260598
Mexicana tetra	MODERN SPECIES	19	cabp5a (ENSAMXG00000020870)	nif3l1 (ENSAMXG00000020876)	ENSAMXG00000020890	tbx6 (ENSAMXG00000009333)	zgc:92040 (ENSAMXG00000020919)	eif3c (ENSAMXG00000020949)	ppp4cb (ENSAMXG00000020968)	ENSAMXG00000020995	ENSAMXG00000043422	aldoaa (ENSAMXG00000021020)	ENSAMXG00000021044	ENSAMXG00000021066	vkorc1 (ENSAMXG00000037562)	mapk7 (ENSAMXG00000042526)	zgc:92313 (ENSAMXG00000038114)	pax10 (ENSAMXG00000044102) ##22	ENSAMXG00000021113	ca15b (ENSAMXG00000034756)	ENSAMXG00000021131	ENSAMXG00000032303	ENSAMXG00000021148	trpm4b.2 (ENSAMXG00000021168)	ENSAMXG00000021209	ENSAMXG00000021218	irf3 (ENSAMXG00000021232)	ENSAMXG00000033423 ##16	ENSAMXG00000021253	ENSAMXG00000040184	ENSAMXG00000021275	ENSAMXG00000021280	zgc:163073 (ENSAMXG00000021284)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	390													vkorc1 (ENSPNAG00000022513)	mapk7 (ENSPNAG00000022508)	zgc:92313 (ENSPNAG00000022475)	ENSPNAG00000022464 ##22	ENSPNAG00000022453	ENSPNAG00000022410	ca15b (ENSPNAG00000022383)	ENSPNAG00000022348	ENSPNAG00000022327	trpm4b.2 (ENSPNAG00000022304)	ENSPNAG00000022122	ENSPNAG00000022112	irf3 (ENSPNAG00000022095)	ENSPNAG00000022066 ##16	ENSPNAG00000021926	ENSPNAG00000021809	ENSPNAG00000021792	ENSPNAG00000021720	zgc:163073 (ENSPNAG00000003692)
Red-bellied piranha	MODERN SPECIES	50	prl (ENSPNAG00000018032)	ENSPNAG00000018039	prmt1 (ENSPNAG00000018063)	AP2A1 (ENSPNAG00000018303)	ENSPNAG00000018339	rras (ENSPNAG00000018361)	prrg2 (ENSPNAG00000018372) ##17	PRR12 (ENSPNAG00000018387) ##16	ENSPNAG00000018402	ENSPNAG00000018665	ENSPNAG00000018695	trpm4a (ENSPNAG00000018714)	ENSPNAG00000018730	nosip (ENSPNAG00000018761)	rcn3 (ENSPNAG00000018800) ##21	pax10 (ENSPNAG00000018834) ##22	ENSPNAG00000018839	tspan4b (ENSPNAG00000018861)	ENSPNAG00000018885	ENSPNAG00000018893	ENSPNAG00000018911	thoc6 (ENSPNAG00000018959)	ENSPNAG00000018986	rnf25 (ENSPNAG00000018994)	kat8 (ENSPNAG00000019033)	ENSPNAG00000019039	ENSPNAG00000019045	fus (ENSPNAG00000019122)	ENSPNAG00000019136	ENSPNAG00000019151	ENSPNAG00000019165
Clupeiformes	ANCESTRAL SPECIES	84	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.q	ENSGT00950000182818.A	ENSGT00940000154700	ENSGT00950000182838.A.a.a	ENSGT00940000167194	ENSGT00940000160972	ENSGT00940000158268.b ##17	ENSGT00440000037417.B.a ##16	ENSGT00970000194335	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000158693.A	ENSGT00990000207765	ENSGT00390000015505	ENSGT01010000222360.D.a ##21	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00800000125268	ENSGT00390000014595.a.b	ENSGT00940000165867.B	ENSGT00940000167070	ENSGT00390000015278	ENSGT00940000166574	ENSGT00390000001557
Denticle herring	MODERN SPECIES	17	ENSDCDG00000005302	ENSDCDG00000005294	ENSDCDG00000005291	ENSDCDG00000005279	AP2A1 (ENSDCDG00000005259)	ENSDCDG00000005245	rras (ENSDCDG00000005242)	prrg2 (ENSDCDG00000005240) ##17	ENSDCDG00000005236 ##16	ENSDCDG00000005221	ENSDCDG00000005214	trpm4a (ENSDCDG00000005208)	ENSDCDG00000005205	nosip (ENSDCDG00000005200)	rcn3 (ENSDCDG00000005197) ##21	pax10 (ENSDCDG00000005194) ##22	ENSDCDG00000005192	tspan4b (ENSDCDG00000005191)	ENSDCDG00000005188	ENSDCDG00000005178	ENSDCDG00000005170	thoc6 (ENSDCDG00000005157)	ENSDCDG00000005143	rnf25 (ENSDCDG00000005140)	tescb (ENSDCDG00000005137)	ENSDCDG00000005130	ENSDCDG00000005124	ENSDCDG00000005119	SEZ6L2 (ENSDCDG00000004939)	kctd13 (ENSDCDG00000004928)	hirip3 (ENSDCDG00000004917)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	15	CPXM2 (ENSCHAG00000004242)	oat (ENSCHAG00000005645)	bub3 (ENSCHAG00000006489)	ENSCHAG00000006576	ENSCHAG00000006707	ENSCHAG00000007158	ENSCHAG00000007279	ENSCHAG00000007292	zgc:92313 (ENSCHAG00000007297)	mapk7 (ENSCHAG00000007309)	vkorc1 (ENSCHAG00000007318)	ENSCHAG00000007329	ENSCHAG00000007607	ENSCHAG00000008541	ENSCHAG00000008897	ENSCHAG00000008920 ##22	ENSCHAG00000008935	ENSCHAG00000008953	ENSCHAG00000009065	ENSCHAG00000009106	ENSCHAG00000009127	ENSCHAG00000009302	ENSCHAG00000009307	irf3 (ENSCHAG00000009319)	PRR12 (ENSCHAG00000009327) ##16	ENSCHAG00000009442	SBK1 (ENSCHAG00000009462)	LRRC4B (ENSCHAG00000009467)	mybpc2b (ENSCHAG00000009509)	ZNF385C (ENSCHAG00000011688)	RAB5C (ENSCHAG00000011699)
Atlantic herring	MODERN SPECIES		ENSCHAG00000000091	prl (ENSCHAG00000000101)	prmt1 (ENSCHAG00000001278)	AP2A1 (ENSCHAG00000006529)	ENSCHAG00000006985	rras (ENSCHAG00000006991)	prrg2 (ENSCHAG00000007015) ##17	PRR12 (ENSCHAG00000007076) ##16	ENSCHAG00000007089 ##16	ENSCHAG00000007134	ENSCHAG00000007398	trpm4a (ENSCHAG00000007576)	ENSCHAG00000008482	nosip (ENSCHAG00000008489)	rcn3 (ENSCHAG00000008580) ##21	pax10 (ENSCHAG00000008615) ##22	ENSCHAG00000008630	tspan4b (ENSCHAG00000008650)	ENSCHAG00000008692	ENSCHAG00000008711	ENSCHAG00000008720	NUP85 (ENSCHAG00000008801)	ENSCHAG00000009368	ENSCHAG00000009481	helz (ENSCHAG00000009524)	CACNG1 (ENSCHAG00000010660)	ENSCHAG00000010671	cacng4b (ENSCHAG00000010673)	aimp2 (ENSCHAG00000010682)	pvalb8 (ENSCHAG00000010687)	pvalb4 (ENSCHAG00000010695)
Euteleosteomorpha	ANCESTRAL SPECIES	73	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00930000151040.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16
Acanthomorphata	ANCESTRAL SPECIES	60	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT01090000260230	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630	ENSGT00940000165368
Cod	MODERN SPECIES	9	ENSGMOG00000031941	ENSGMOG00000012800	ENSGMOG00000032351	ENSGMOG00000026426	ENSGMOG00000024268	ENSGMOG00000001503	ENSGMOG00000001496	ENSGMOG00000001481	ENSGMOG00000036982	ENSGMOG00000001460	ENSGMOG00000035922	ENSGMOG00000017330	vkorc1 (ENSGMOG00000009953)	mapk7 (ENSGMOG00000031595)	zgc:92313 (ENSGMOG00000036940)	ENSGMOG00000007260 ##22	ENSGMOG00000007269	ca15b (ENSGMOG00000006635)	ENSGMOG00000022620	ENSGMOG00000002392	ENSGMOG00000035324	ENSGMOG00000022764	ENSGMOG00000022482	osbpl7 (ENSGMOG00000001971)	tbx21 (ENSGMOG00000025536)	ENSGMOG00000025195	ENSGMOG00000003034	ENSGMOG00000012703	ENSGMOG00000029400	ENSGMOG00000016130	ENSGMOG00000016093
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	10	ENSMMDG00005003436	ENSMMDG00005003444	cabp5a (ENSMMDG00005003598)	nif3l1 (ENSMMDG00005003612)	TBX6 (ENSMMDG00005003614)	zgc:92040 (ENSMMDG00005003620)	eif3c (ENSMMDG00005003629)	aldoaa (ENSMMDG00005003639)	ENSMMDG00005003657	ENSMMDG00005003683	ENSMMDG00005003735	ENSMMDG00005003904	vkorc1 (ENSMMDG00005003977)	mapk7 (ENSMMDG00005003978)	zgc:92313 (ENSMMDG00005003985)	ENSMMDG00005003990 ##22	ENSMMDG00005003999	ca15b (ENSMMDG00005004011)	ENSMMDG00005004017	trpm4b.2 (ENSMMDG00005004065)	ENSMMDG00005004461	ENSMMDG00005004468	irf3 (ENSMMDG00005004510)	PRR12 (ENSMMDG00005005398) ##16	ENSMMDG00005005402	CPT1C (ENSMMDG00005005442)	ENSMMDG00005006474	ENSMMDG00005006476	ENSMMDG00005006483	dnaaf3 (ENSMMDG00005006602)	syt5b (ENSMMDG00005006605)
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005024213	ENSMMDG00005024211	ABCC1 (ENSMMDG00005020742)	hao1 (ENSMMDG00005020376)	lin7b (ENSMMDG00005020348) ##33	snrnp70 (ENSMMDG00005020341)	ENSMMDG00005020340	AP2A1 (ENSMMDG00005020195)	prmt1 (ENSMMDG00005017385)	prrg2 (ENSMMDG00005017360) ##17	ENSMMDG00005017359	trpm4a (ENSMMDG00005017351)	ENSMMDG00005017349	nosip (ENSMMDG00005017347)	rcn3 (ENSMMDG00005017346) ##21	pax10 (ENSMMDG00005017345) ##22	ENSMMDG00005017344	tspan4b (ENSMMDG00005017341)	ENSMMDG00005017340	ENSMMDG00005017339	ENSMMDG00005017337	ENSMMDG00005017335	clec19a (ENSMMDG00005017332)	smg1 (ENSMMDG00005017012)	rbfox1 (ENSMMDG00005016997)	ENSMMDG00005016994	ENSMMDG00005014513	fbxl16 (ENSMMDG00005014487)	rab11fip4a (ENSMMDG00005014480)	coil (ENSMMDG00005014466)	scpep1 (ENSMMDG00005013459)
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Tiger tail seahorse	MODERN SPECIES	330	chst3b (ENSHCOG00000019760)	pax2b (ENSHCOG00000019743)	fbxl15 (ENSHCOG00000019722)	ENSHCOG00000019710	zgc:92040 (ENSHCOG00000019700)	eif3c (ENSHCOG00000019694)	ENSHCOG00000019666	aldoaa (ENSHCOG00000019659)	ENSHCOG00000019638	ENSHCOG00000019623	ENSHCOG00000019505	ENSHCOG00000019288	vkorc1 (ENSHCOG00000000509)	mapk7 (ENSHCOG00000019263)	zgc:92313 (ENSHCOG00000019241)	pax10 (ENSHCOG00000019236) ##22	ENSHCOG00000000786	ca15b (ENSHCOG00000019161)	ENSHCOG00000019144	trpm4b.2 (ENSHCOG00000019127)	ENSHCOG00000019086	ENSHCOG00000019054	irf3 (ENSHCOG00000018749)	PRR12 (ENSHCOG00000018578) ##16	ENSHCOG00000018570	ENSHCOG00000018566	CPT1C (ENSHCOG00000018552)	TNNT1 (ENSHCOG00000018496)	dnaaf3 (ENSHCOG00000018355)	syt5b (ENSHCOG00000018330)	zgc:56095 (ENSHCOG00000018301)
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000179572	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000179572	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000179572	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000179572	ENSGT00940000167101	ENSGT00940000173513.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00730000111459	ENSGT00940000158693.B	ENSGT00940000154380.a.b	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Fugu	MODERN SPECIES		cabp5a (ENSTRUG00000008562)	nif3l1 (ENSTRUG00000008678)	tbx6 (ENSTRUG00000008789)	zgc:92040 (ENSTRUG00000008804)	eif3c (ENSTRUG00000008951)	ENSTRUG00000031001	ENSTRUG00000009277	ENSTRUG00000009290	aldoaa (ENSTRUG00000009525)	ENSTRUG00000009659	ENSTRUG00000026021	ENSTRUG00000010471	vkorc1 (ENSTRUG00000010748)	mapk7 (ENSTRUG00000020107)	zgc:92313 (ENSTRUG00000010967)	pax10 (ENSTRUG00000020030) ##22	ENSTRUG00000011072	ENSTRUG00000027601	ENSTRUG00000032563	ENSTRUG00000011367	ENSTRUG00000033203	trpm4b.2 (ENSTRUG00000011382)	adm5 (ENSTRUG00000011816)	ENSTRUG00000025407	irf3 (ENSTRUG00000012031)	PRR12 (ENSTRUG00000020947) ##16	ENSTRUG00000012372	ENSTRUG00000012539	ENSTRUG00000029270	ENSTRUG00000023320	TNNT1 (ENSTRUG00000024762)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Ballan wrasse	MODERN SPECIES	5	ENSLBEG00000023455	ENSLBEG00000023513	ENSLBEG00000023561	aldoaa (ENSLBEG00000023581)	ENSLBEG00000023734	ENSLBEG00000024101	ENSLBEG00000024118	ENSLBEG00000024174	ENSLBEG00000024233	ENSLBEG00000024256	ENSLBEG00000024301	ENSLBEG00000024366	vkorc1 (ENSLBEG00000024408)	mapk7 (ENSLBEG00000024459)	zgc:92313 (ENSLBEG00000024481)	pax10 (ENSLBEG00000024502) ##22	ENSLBEG00000024526	ca15b (ENSLBEG00000024566)	ENSLBEG00000024602	trpm4b.2 (ENSLBEG00000024684)	ENSLBEG00000024826	ENSLBEG00000024797	irf3 (ENSLBEG00000024845)	ENSLBEG00000024885 ##16	ENSLBEG00000024960	ENSLBEG00000025092	TNNT1 (ENSLBEG00000025200)	dnaaf3 (ENSLBEG00000025241)	syt5b (ENSLBEG00000025271)	zgc:56095 (ENSLBEG00000025282)	ENSLBEG00000025307
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163009.b.a.b	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Perciformes	ANCESTRAL SPECIES	9	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000174097	ENSGT00940000179572	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Channel bull blenny	MODERN SPECIES	10	nif3l1 (ENSCGOG00000018018)	tbx6 (ENSCGOG00000018021)	zgc:92040 (ENSCGOG00000018042)	eif3c (ENSCGOG00000018051)	ENSCGOG00000018455	ENSCGOG00000018456	ENSCGOG00000018457	ENSCGOG00000018460	ENSCGOG00000018464	aldoaa (ENSCGOG00000018536)	ENSCGOG00000018555	ENSCGOG00000018562	vkorc1 (ENSCGOG00000018642)	mapk7 (ENSCGOG00000018645)	zgc:92313 (ENSCGOG00000018650)	pax10 (ENSCGOG00000018653) ##22	ENSCGOG00000018663	ENSCGOG00000018667	ca15b (ENSCGOG00000018670)	ENSCGOG00000018682	ENSCGOG00000018683	trpm4b.2 (ENSCGOG00000018691)	ENSCGOG00000018705	ENSCGOG00000018707	irf3 (ENSCGOG00000018714)	PRR12 (ENSCGOG00000018746) ##16	ENSCGOG00000018767	CPT1C (ENSCGOG00000019104)	ENSCGOG00000022279	TNNT1 (ENSCGOG00000022282)	dnaaf3 (ENSCGOG00000022284)
Pike perch	MODERN SPECIES	3	nif3l1 (ENSSLUG00000021295)	tbx6 (ENSSLUG00000021299)	zgc:92040 (ENSSLUG00000021303)	eif3c (ENSSLUG00000021315)	ENSSLUG00000003358	ENSSLUG00000003370	ENSSLUG00000003381	ENSSLUG00000003400	ENSSLUG00000003421	aldoaa (ENSSLUG00000003458)	ENSSLUG00000003501	ENSSLUG00000003591	vkorc1 (ENSSLUG00000003769)	mapk7 (ENSSLUG00000003780)	zgc:92313 (ENSSLUG00000003795)	pax10 (ENSSLUG00000003803) ##22	ENSSLUG00000003818	ENSSLUG00000003830	ENSSLUG00000003837	trpm4b.2 (ENSSLUG00000003859)	ENSSLUG00000003956	ENSSLUG00000003963	irf3 (ENSSLUG00000004008)	PRR12 (ENSSLUG00000004023) ##16	ENSSLUG00000004085	CPT1C (ENSSLUG00000004915)	TNNT1 (ENSSLUG00000006181)	dnaaf3 (ENSSLUG00000006568)	syt5b (ENSSLUG00000006573)	zgc:56095 (ENSSLUG00000006577)	ENSSLUG00000006582
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000159991.A.b	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000174097	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Stickleback	MODERN SPECIES	5	eif3c (ENSGACG00000007652)	ENSGACG00000007666	ENSGACG00000007671	ENSGACG00000007673	ENSGACG00000007675	aldoaa (ENSGACG00000007727)	ENSGACG00000007748	ENSGACG00000007750	ENSGACG00000007767	ENSGACG00000007782	ENSGACG00000007789	ENSGACG00000007794	vkorc1 (ENSGACG00000007797)	mapk7 (ENSGACG00000007803)	zgc:92313 (ENSGACG00000007820)	pax10 (ENSGACG00000007835) ##22	ENSGACG00000007839	ca15b (ENSGACG00000007849)	ENSGACG00000007888	ENSGACG00000007890	ENSGACG00000007899	trpm4b.2 (ENSGACG00000007901)	ENSGACG00000007920	irf3 (ENSGACG00000007945)	PRR12 (ENSGACG00000007964) ##16	ENSGACG00000007972	ENSGACG00000007987	ENSGACG00000008003	ENSGACG00000008009	dnaaf3 (ENSGACG00000008014)	ENSGACG00000008019
Lumpfish	MODERN SPECIES	10	ENSCLMG00005002397	ENSCLMG00005002395	ENSCLMG00005002393	kif22 (ENSCLMG00005002391)	pagr1 (ENSCLMG00005002388)	tlcd3ba (ENSCLMG00005002382)	ENSCLMG00005002378	ENSCLMG00005002373	ENSCLMG00005002372	ENSCLMG00005002371	aldoaa (ENSCLMG00005002370)	ENSCLMG00005002364	vkorc1 (ENSCLMG00005002362)	mapk7 (ENSCLMG00005002361)	zgc:92313 (ENSCLMG00005002349)	pax10 (ENSCLMG00005002345) ##22	ENSCLMG00005002341	ca15b (ENSCLMG00005002313)	ENSCLMG00005002310	trpm4b.2 (ENSCLMG00005002267)	ENSCLMG00005002263	ENSCLMG00005002262	irf3 (ENSCLMG00005002258)	PRR12 (ENSCLMG00005002256) ##16	ENSCLMG00005002254	ENSCLMG00005001775	ENSCLMG00005001634	ENSCLMG00005001538	dnaaf3 (ENSCLMG00005001503)	syt5b (ENSCLMG00005001483)	zgc:56095 (ENSCLMG00005001468)
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT01100000263473.a.b.g.a.a.b.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Gilthead seabream	MODERN SPECIES	12	tbx6 (ENSSAUG00010025038)	zgc:92040 (ENSSAUG00010025036)	eif3c (ENSSAUG00010025029)	ENSSAUG00010025024	ENSSAUG00010025023	zgc:123217 (ENSSAUG00010025021)	ENSSAUG00010025020	zgc:123217 (ENSSAUG00010025018)	aldoaa (ENSSAUG00010025017)	ENSSAUG00010025009	ENSSAUG00010025002	ENSSAUG00010024990	vkorc1 (ENSSAUG00010024988)	mapk7 (ENSSAUG00010024984)	zgc:92313 (ENSSAUG00010024981)	pax10 (ENSSAUG00010024979) ##22	ENSSAUG00010024972	ca15b (ENSSAUG00010024969)	ENSSAUG00010024966	ENSSAUG00010024960	trpm4b.2 (ENSSAUG00010024952)	ENSSAUG00010024942	ENSSAUG00010024940	irf3 (ENSSAUG00010024935)	PRR12 (ENSSAUG00010024933) ##16	ENSSAUG00010024534	ENSSAUG00010024159	ENSSAUG00010024148	TNNT1 (ENSSAUG00010024138)	dnaaf3 (ENSSAUG00010024137)	syt5b (ENSSAUG00010024136)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Large yellow croaker	MODERN SPECIES	488	tbx6 (ENSLCRG00005006511)	zgc:92040 (ENSLCRG00005006512)	eif3c (ENSLCRG00005006515)	ENSLCRG00005006517	ENSLCRG00005006520	zgc:123217 (ENSLCRG00005006522)	aldoaa (ENSLCRG00005006523)	ENSLCRG00005006551	ENSLCRG00005006555	ENSLCRG00005006561	ENSLCRG00005006564	ENSLCRG00005006567	vkorc1 (ENSLCRG00005006736)	mapk7 (ENSLCRG00005006737)	zgc:92313 (ENSLCRG00005006740)	pax10 (ENSLCRG00005006742) ##22	ENSLCRG00005006743	ca15b (ENSLCRG00005006744)	ENSLCRG00005006745	ENSLCRG00005006747	trpm4b.2 (ENSLCRG00005006750)	ENSLCRG00005006752	ENSLCRG00005006754	irf3 (ENSLCRG00005006756)	PRR12 (ENSLCRG00005006761) ##16	ENSLCRG00005006766	CPT1C (ENSLCRG00005006838)	TNNT1 (ENSLCRG00005006984)	dnaaf3 (ENSLCRG00005006987)	syt5b (ENSLCRG00005006992)	zgc:56095 (ENSLCRG00005007004)
European seabass	MODERN SPECIES	11	ENSDLAG00005005537	ENSDLAG00005029642	eif3c (ENSDLAG00005005062)	ENSDLAG00005004992	ENSDLAG00005004981	aldoab (ENSDLAG00005004302)	ENSDLAG00005004666	ENSDLAG00005019790	ENSDLAG00005033115	ENSDLAG00005028961	ENSDLAG00005032624	ENSDLAG00005026835	VKORC1L1 (ENSDLAG00005029622)	mapk7 (ENSDLAG00005004613)	zgc:92313 (ENSDLAG00005026333)	ENSDLAG00005004566 ##22	MMP17 (ENSDLAG00005004456)	ENSDLAG00005029781	ENSDLAG00005004436	ENSDLAG00005004392	ENSDLAG00005004362	trpm4b.2 (ENSDLAG00005013728)	ENSDLAG00005030026	ENSDLAG00005013619	irf3 (ENSDLAG00005013577)	ENSDLAG00005013523 ##16	ENSDLAG00005012025	ENSDLAG00005010849	ENSDLAG00005010898	ENSDLAG00005033768	ENSDLAG00005010782
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630	ENSGT00940000165368
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000012817	ENSMAMG00000012736	cabp5a (ENSMAMG00000012625)	nif3l1 (ENSMAMG00000012598)	tbx6 (ENSMAMG00000012579)	ENSMAMG00000012566	eif3c (ENSMAMG00000012512)	ENSMAMG00000012481	zgc:123217 (ENSMAMG00000012470)	aldoab (ENSMAMG00000012441)	ENSMAMG00000012380	ENSMAMG00000012311	vkorc1 (ENSMAMG00000012297)	mapk7 (ENSMAMG00000012265)	zgc:92313 (ENSMAMG00000012252)	ENSMAMG00000012228 ##22	ENSMAMG00000012188	ca15b (ENSMAMG00000012175)	ENSMAMG00000028120	ENSMAMG00000012140	ENSMAMG00000012119	trpm4b.2 (ENSMAMG00000012102)	ENSMAMG00000012087	ENSMAMG00000012075	irf3 (ENSMAMG00000012012)	ENSMAMG00000011988 ##16	ENSMAMG00000011944	ENSMAMG00000011901	ENSMAMG00000011510	ENSMAMG00000011490	ENSMAMG00000011463
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.x.b	ENSGT00940000164039.a.x.a	ENSGT00940000164039.b.a	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Climbing perch	MODERN SPECIES	10	ENSATEG00000019028	eif3c (ENSATEG00000019001)	ENSATEG00000027260	ENSATEG00000029350	ENSATEG00000028205	ENSATEG00000029674	aldoab (ENSATEG00000018866)	ENSATEG00000018847	ENSATEG00000018703	ENSATEG00000018627	ENSATEG00000018548	ENSATEG00000018354	vkorc1 (ENSATEG00000018326)	mapk7 (ENSATEG00000018301)	zgc:92313 (ENSATEG00000018315)	ENSATEG00000018271 ##22	ENSATEG00000018256	ENSATEG00000018202	ENSATEG00000018185	ENSATEG00000018124	trpm4b.2 (ENSATEG00000018084)	ENSATEG00000026222	ENSATEG00000018056	irf3 (ENSATEG00000018045)	ENSATEG00000018028 ##16	ENSATEG00000017961	ENSATEG00000017909	ENSATEG00000017822	ENSATEG00000017786	ENSATEG00000017759	ENSATEG00000017743
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000015092	ENSBSLG00000015031	ENSBSLG00000015011	ENSBSLG00000014984	ENSBSLG00000014976	ENSBSLG00000014970	ENSBSLG00000014910	ENSBSLG00000014900	ENSBSLG00000014869	ENSBSLG00000014861	aldoaa (ENSBSLG00000014659)	ENSBSLG00000014363	vkorc1 (ENSBSLG00000014348)	mapk7 (ENSBSLG00000014329)	zgc:92313 (ENSBSLG00000014317)	pax10 (ENSBSLG00000014302) ##22	ENSBSLG00000014261	ENSBSLG00000014234	ENSBSLG00000014217	ENSBSLG00000014182	ENSBSLG00000014074	trpm4b.2 (ENSBSLG00000013344)	ENSBSLG00000013253	ENSBSLG00000013124	irf3 (ENSBSLG00000011912)	PRR12 (ENSBSLG00000011664) ##16	ENSBSLG00000010366	ENSBSLG00000009551	ENSBSLG00000009427	dnaaf3 (ENSBSLG00000009408)	syt5b (ENSBSLG00000009252)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163160.b.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630	ENSGT00940000165368
Tongue sole	MODERN SPECIES	18	ENSCSEG00000019698	rsl1d1 (ENSCSEG00000019693)	SNX29 (ENSCSEG00000019675)	shisa9a (ENSCSEG00000019672)	cpped1 (ENSCSEG00000019665)	ercc4 (ENSCSEG00000019658)	MRTFB (ENSCSEG00000019654)	dlx4b (ENSCSEG00000019648)	dlx3b (ENSCSEG00000019645)	itga3b (ENSCSEG00000019633)	ENSCSEG00000019613	ENSCSEG00000019607	vkorc1 (ENSCSEG00000019605)	mapk7 (ENSCSEG00000019596)	zgc:92313 (ENSCSEG00000019589)	pax10 (ENSCSEG00000019587) ##22	ENSCSEG00000019583	ENSCSEG00000019581	ENSCSEG00000019566	ENSCSEG00000019562	ENSCSEG00000019561	ENSCSEG00000019552	trpm4b.2 (ENSCSEG00000019535)	ENSCSEG00000019530	irf3 (ENSCSEG00000019505)	ENSCSEG00000019486 ##16	ENSCSEG00000019481	ppp1r3b (ENSCSEG00000019470)	ENSCSEG00000019457	ENSCSEG00000019452	ENSCSEG00000019439
Turbot	MODERN SPECIES	9	cabp5a (ENSSMAG00000016698)	nif3l1 (ENSSMAG00000016686)	ENSSMAG00000016673	ENSSMAG00000016664	EIF3C (ENSSMAG00000016638)	ENSSMAG00000032226	ENSSMAG00000016602	aldoab (ENSSMAG00000016591)	ENSSMAG00000016504	ENSSMAG00000016572	ENSSMAG00000027982	ENSSMAG00000016485	vkorc1 (ENSSMAG00000016474)	mapk7 (ENSSMAG00000016400)	zgc:92313 (ENSSMAG00000016449)	ENSSMAG00000016375 ##22	ENSSMAG00000016244	ca15b (ENSSMAG00000016186)	ENSSMAG00000016146	trpm4b.2 (ENSSMAG00000016074)	ENSSMAG00000016041	ENSSMAG00000016007	irf3 (ENSSMAG00000015932)	ENSSMAG00000015848 ##16	ENSSMAG00000015760	ENSSMAG00000015683	ENSSMAG00000015667	ENSSMAG00000015583	ENSSMAG00000015555	ENSSMAG00000015541	ENSSMAG00000015523
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Barramundi perch	MODERN SPECIES	76	TAOK2 (ENSLCAG00010027621)	cabp5a (ENSLCAG00010027601)	nif3l1 (ENSLCAG00010027598)	tbx6 (ENSLCAG00010027596)	zgc:92040 (ENSLCAG00010027591)	eif3c (ENSLCAG00010027580)	ENSLCAG00010027570	ENSLCAG00010027569	aldoaa (ENSLCAG00010027563)	ENSLCAG00010027554	ENSLCAG00010027521	ENSLCAG00010027506	vkorc1 (ENSLCAG00010027504)	mapk7 (ENSLCAG00010027503)	zgc:92313 (ENSLCAG00010027502)	pax10 (ENSLCAG00010027500) ##22	ENSLCAG00010027497	ca15b (ENSLCAG00010027495)	ENSLCAG00010027494	ENSLCAG00010027491	ENSLCAG00010027489	trpm4b.2 (ENSLCAG00010027483)	ENSLCAG00010027481	ENSLCAG00010027479	irf3 (ENSLCAG00010027474)	PRR12 (ENSLCAG00010027470) ##16	ENSLCAG00010027391	CPT1C (ENSLCAG00010027344)	ENSLCAG00010027328	ENSLCAG00010027325	ENSLCAG00010027303
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Yellowtail amberjack	MODERN SPECIES	2878	ENSSLDG00000009471	ENSSLDG00000009503	cabp5a (ENSSLDG00000009561)	nif3l1 (ENSSLDG00000009595)	tbx6 (ENSSLDG00000009611)	zgc:92040 (ENSSLDG00000009647)	eif3c (ENSSLDG00000009706)	ENSSLDG00000009805	zgc:123217 (ENSSLDG00000009839)	aldoaa (ENSSLDG00000009872)	ENSSLDG00000009900	ENSSLDG00000009976	vkorc1 (ENSSLDG00000010013)	mapk7 (ENSSLDG00000010030)	zgc:92313 (ENSSLDG00000010051)	pax10 (ENSSLDG00000010081) ##22	ENSSLDG00000010120	ca15b (ENSSLDG00000010158)	ENSSLDG00000010192	ENSSLDG00000010236	trpm4b.2 (ENSSLDG00000010288)	ENSSLDG00000010497	ENSSLDG00000010526	irf3 (ENSSLDG00000010554)	PRR12 (ENSSLDG00000010595) ##16	ENSSLDG00000010703	ENSSLDG00000010783	ENSSLDG00000010825	ENSSLDG00000010842	dnaaf3 (ENSSLDG00000010866)	ENSSLDG00000010927
Greater amberjack	MODERN SPECIES	27	ENSSDUG00000023069	TAOK2 (ENSSDUG00000023076)	cabp5a (ENSSDUG00000023085)	nif3l1 (ENSSDUG00000023089)	ENSSDUG00000023094	zgc:92040 (ENSSDUG00000023099)	eif3c (ENSSDUG00000023117)	ENSSDUG00000023132	ENSSDUG00000023135	aldoaa (ENSSDUG00000023137)	ENSSDUG00000023147	ENSSDUG00000023186	vkorc1 (ENSSDUG00000023205)	mapk7 (ENSSDUG00000023207)	zgc:92313 (ENSSDUG00000023211)	pax10 (ENSSDUG00000023213) ##22	ENSSDUG00000023218	ca15b (ENSSDUG00000023228)	ENSSDUG00000023234	trpm4b.2 (ENSSDUG00000023246)	ENSSDUG00000023267	ENSSDUG00000023271	irf3 (ENSSDUG00000023276)	PRR12 (ENSSDUG00000023295) ##16	ENSSDUG00000023301	ENSSDUG00000023311	ENSSDUG00000023321	TNNT1 (ENSSDUG00000023324)	dnaaf3 (ENSSDUG00000023328)	syt5b (ENSSDUG00000023331)	zgc:56095 (ENSSDUG00000023333)
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.c.a	ENSGT00940000173513	ENSGT00940000179572	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.l	ENSGT00940000154838.B.k	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900.ab.a	ENSGT00390000017900.ab.b	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.l.a.a.b	ENSGT00940000154838.B.l.a.a.a.a	ENSGT00940000163009.b.a.a.b.a.y	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.i.b.b	ENSGT00940000164039.b.a.b.a	ENSGT00940000164039.a.i.b.a.b	ENSGT00940000164039.a.i.b.a.a	ENSGT00940000164039.b.a.b.b	ENSGT00940000168281	ENSGT00940000158693.B.a.b	ENSGT00940000158693.B.a.a	ENSGT00940000158693.B.b	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00390000006265.a	ENSGT00390000017900.ab.a	ENSGT00390000017900.ab.b	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.l.a.a.b	ENSGT00940000154838.B.l.b.a.a.b	ENSGT00940000154838.B.l.b.a.a.a.b	ENSGT00940000154838.B.l.a.a.a.a.b	ENSGT00940000154838.B.l.a.a.a.a.a.a	ENSGT00940000163009.b.a.a.b.a.y	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.i.b.b	ENSGT00940000164039.b.a.b.a	ENSGT00940000164039.b.b	ENSGT00940000158693.B.b	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Haplochromini	ANCESTRAL SPECIES	17	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.l.a.a.b	ENSGT00940000154838.B.l.b.a.a.b	ENSGT00940000154838.B.l.b.a.a.a.b	ENSGT00940000154838.B.l.a.a.a.a.b	ENSGT00940000154838.B.l.a.a.a.a.a.b	ENSGT00940000154838.B.k	ENSGT00940000163009.b.a.a.b.a.z	ENSGT00940000163852.c.a.b.a.b.j	ENSGT00940000163852.c.a.b.a.b.i	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.i.b.b	ENSGT00940000164039.b.a.b.a	ENSGT00940000164039.b.b	ENSGT00940000164039.a.i.b.a.b	ENSGT00940000164039.a.i.b.a.a	ENSGT00940000164039.b.a.b.b	ENSGT00940000168281	ENSGT00940000158693.B.a.b	ENSGT00940000158693.B.a.a.a.b	ENSGT00940000158693.B.a.a.a.a	ENSGT00940000158693.B.b	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.l.a.a.b	ENSGT00940000154838.B.l.b.a.a.b	ENSGT00940000154838.B.l.b.a.a.a.b	ENSGT00940000154838.B.l.a.a.a.a.b	ENSGT00940000164039.a.j	ENSGT00940000154838.B.l.a.a.a.a.a.b	ENSGT00940000154838.B.k	ENSGT00940000163009.b.a.a.b.a.z	ENSGT00940000163852.c.a.b.a.b.j	ENSGT00940000163852.c.a.b.a.b.i	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.i.b.b	ENSGT00940000164039.b.a.b.a	ENSGT00940000164039.a.i.b.a.b	ENSGT00940000164039.a.i.b.a.a	ENSGT00940000164039.b.a.b.b	ENSGT00940000168281	ENSGT00940000158693.B.a.b	ENSGT00940000158693.B.a.a.a.b	ENSGT00940000158693.B.a.a.a.a	ENSGT00940000158693.B.a.a.b	ENSGT00940000158693.B.b	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.l.b.a.a.b	ENSGT00940000154838.B.l.b.a.a.a.b.a	ENSGT00940000154838.B.l.a.a.a.a.b	ENSGT00940000164039.a.j	ENSGT00940000154838.B.l.a.a.a.a.a.b	ENSGT00940000154838.B.k	ENSGT00940000163009.b.a.a.b.a.z	ENSGT00940000165368.v	ENSGT00940000163852.c.a.b.a.b.i	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.i.b.b	ENSGT00940000164039.b.a.b.a	ENSGT00940000164039.a.i.b.a.b	ENSGT00940000164039.a.i.b.a.a	ENSGT00940000164039.b.a.b.b	ENSGT00940000168281	ENSGT00940000158693.B.a.b	ENSGT00940000158693.B.a.a.a.b	ENSGT00940000158693.B.a.a.a.a	ENSGT00940000158693.B.a.a.b	ENSGT00940000158693.B.b	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569
Eastern happy	MODERN SPECIES	15	ENSACLG00000009120	ENSACLG00000009031	ENSACLG00000008498	ENSACLG00000008490	ENSACLG00000008452	ENSACLG00000008421	ENSACLG00000007676	ENSACLG00000007628	ENSACLG00000007585	ENSACLG00000007566	ENSACLG00000007542	ENSACLG00000006961	vkorc1 (ENSACLG00000006943)	mapk7 (ENSACLG00000006936)	zgc:92313 (ENSACLG00000006924)	pax10 (ENSACLG00000006904) ##22	ENSACLG00000006827	ENSACLG00000006811	ENSACLG00000006796	ENSACLG00000006788	ENSACLG00000006574	ENSACLG00000006554	ENSACLG00000006519	ENSACLG00000006481	ENSACLG00000006431	ENSACLG00000006391	ENSACLG00000006373	ENSACLG00000006346	ENSACLG00000006338	ENSACLG00000006326	irf3 (ENSACLG00000006295)
Zebra mbuna	MODERN SPECIES	1111	ENSMZEG00005013530	ENSMZEG00005013505	ENSMZEG00005013493	ENSMZEG00005013490	ALDOA (ENSMZEG00005013474)	ENSMZEG00005013447	ENSMZEG00005013426	ENSMZEG00005013403	ENSMZEG00005013390	ENSMZEG00005013385	ENSMZEG00005013370	ENSMZEG00005013007	vkorc1 (ENSMZEG00005012961)	mapk7 (ENSMZEG00005012953)	zgc:92313 (ENSMZEG00005012947)	pax10 (ENSMZEG00005012932) ##22	ENSMZEG00005012905	ENSMZEG00005012888	ENSMZEG00005012867	ENSMZEG00005012850	ENSMZEG00005012837	ENSMZEG00005012816	ENSMZEG00005012775	ENSMZEG00005012739	ENSMZEG00005012716	ENSMZEG00005012655	ENSMZEG00005012635	ENSMZEG00005012626	irf3 (ENSMZEG00005012604)	PRR12 (ENSMZEG00005012585) ##16	ENSMZEG00005012549
P. nyererei	MODERN SPECIES	694						ENSPNYG00000021465	ENSPNYG00000021418	ENSPNYG00000021364	ENSPNYG00000021302	ENSPNYG00000021234	ENSPNYG00000021205	ENSPNYG00000021188	ENSPNYG00000020635	vkorc1 (ENSPNYG00000020498)	mapk7 (ENSPNYG00000020479)	pax10 (ENSPNYG00000020454) ##22	ENSPNYG00000020445	ENSPNYG00000020426	ENSPNYG00000020363
Burton s mouthbrooder	MODERN SPECIES	1518														vkorc1 (ENSHBUG00000003442)	MAPK7 (ENSHBUG00000003430)	pax10 (ENSHBUG00000000074) ##22
Lyretail cichlid	MODERN SPECIES	436	ENSNBRG00000012647	ENSNBRG00000012725	ENSNBRG00000012782	ENSNBRG00000012848	ENSNBRG00000012905	ENSNBRG00000012993	ENSNBRG00000013073	ENSNBRG00000013143	ENSNBRG00000013169	ENSNBRG00000013227	vkorc1 (ENSNBRG00000013244)	mapk7 (ENSNBRG00000013269)	ENSNBRG00000013364	ENSNBRG00000013383	zgc:92313 (ENSNBRG00000013431)	pax10 (ENSNBRG00000013579) ##22	ENSNBRG00000013599	ENSNBRG00000013622	ENSNBRG00000013646	ENSNBRG00000013662	ENSNBRG00000013681	ENSNBRG00000013828	ENSNBRG00000013846	ENSNBRG00000013866	ENSNBRG00000013941	irf3 (ENSNBRG00000013957)	PRR12 (ENSNBRG00000013989) ##16	ENSNBRG00000014032	ENSNBRG00000014091	ENSNBRG00000014120	ENSNBRG00000014136
Nile tilapia	MODERN SPECIES	20	ENSONIG00000027186	ENSONIG00000037067	ENSONIG00000042562	ENSONIG00000020086	ENSONIG00000033854	ENSONIG00000004788	ENSONIG00000020080	ENSONIG00000020088	ENSONIG00000035079	ENSONIG00000009437	ENSONIG00000009432	ENSONIG00000009431	vkorc1 (ENSONIG00000020085)	mapk7 (ENSONIG00000030731)	zgc:92313 (ENSONIG00000038670)	pax10 (ENSONIG00000031567) ##22	ENSONIG00000020081	ENSONIG00000004754	ENSONIG00000028430	ENSONIG00000020079	ENSONIG00000020078	ENSONIG00000020077	ENSONIG00000031618	ENSONIG00000020076	ENSONIG00000020075	ENSONIG00000020074	ENSONIG00000020073	ENSONIG00000020072	irf3 (ENSONIG00000020071)	PRR12 (ENSONIG00000037953) ##16	ENSONIG00000020069
Midas cichlid	MODERN SPECIES	378										ENSACIG00000016946	ENSACIG00000017018	ENSACIG00000017064	ENSACIG00000017095	mapk7 (ENSACIG00000017132)	zgc:92313 (ENSACIG00000017170)	pax10 (ENSACIG00000017337) ##22	ENSACIG00000017351	ENSACIG00000017378	trpm4b.2 (ENSACIG00000017441)	ENSACIG00000017563	ENSACIG00000017570	irf3 (ENSACIG00000017587)	PRR12 (ENSACIG00000017612) ##16	ENSACIG00000017698	ENSACIG00000017734	ENSACIG00000017777	ENSACIG00000017786	TNNT1 (ENSACIG00000017801)	dnaaf3 (ENSACIG00000017967)	syt5b (ENSACIG00000017995)	zgc:56095 (ENSACIG00000018102)
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.c.a	ENSGT00940000173513	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Bicolor damselfish	MODERN SPECIES	542												ENSSPAG00000005920	vkorc1 (ENSSPAG00000005932)	mapk7 (ENSSPAG00000005941)	zgc:92313 (ENSSPAG00000005955)	pax10 (ENSSPAG00000005963) ##22	ENSSPAG00000005982	ca15b (ENSSPAG00000005998)	ENSSPAG00000006019	trpm4b.2 (ENSSPAG00000006064)	ENSSPAG00000006110	ENSSPAG00000006125	irf3 (ENSSPAG00000006159)	PRR12 (ENSSPAG00000006196) ##16	ENSSPAG00000006250	ENSSPAG00000006441	ENSSPAG00000006519	ENSSPAG00000006551	TNNT1 (ENSSPAG00000006593)	dnaaf3 (ENSSPAG00000007012)	syt5b (ENSSPAG00000007041)
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.c.a	ENSGT00940000173513	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b.g	ENSGT00940000163852.c.a.b.a.b.h	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Spiny chromis	MODERN SPECIES	46												ENSAPOG00000020571	vkorc1 (ENSAPOG00000020523)	mapk7 (ENSAPOG00000020503)	zgc:92313 (ENSAPOG00000020460)	pax10 (ENSAPOG00000000581) ##22	ENSAPOG00000020398	ca15b (ENSAPOG00000020307)	ENSAPOG00000020296	ENSAPOG00000020188	trpm4b.2 (ENSAPOG00000019956)	ENSAPOG00000019927	ENSAPOG00000019896	irf3 (ENSAPOG00000019868)	PRR12 (ENSAPOG00000019853) ##16	ENSAPOG00000019763	ENSAPOG00000019649	TNNT1 (ENSAPOG00000000558)	dnaaf3 (ENSAPOG00000019420)	syt5b (ENSAPOG00000019354)	zgc:56095 (ENSAPOG00000019339)
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.c.a	ENSGT00940000173513	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b.g	ENSGT00940000163852.c.a.b.a.b.h	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a.m	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000177536	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Orange clownfish	MODERN SPECIES	10	cabp5a (ENSAPEG00000010689)	nif3l1 (ENSAPEG00000010674)	tbx6 (ENSAPEG00000010655)	zgc:92040 (ENSAPEG00000010612)	eif3c (ENSAPEG00000010521)	ENSAPEG00000010502	ENSAPEG00000010477	aldoaa (ENSAPEG00000010449)	ENSAPEG00000010309	ENSAPEG00000010279	ENSAPEG00000010217	ENSAPEG00000010185	vkorc1 (ENSAPEG00000010183)	mapk7 (ENSAPEG00000010152)	zgc:92313 (ENSAPEG00000010140)	pax10 (ENSAPEG00000010103) ##22	ENSAPEG00000010048	ca15b (ENSAPEG00000010029)	ENSAPEG00000010025	ENSAPEG00000010008	trpm4b.2 (ENSAPEG00000009983)	ENSAPEG00000009957	ENSAPEG00000009937	irf3 (ENSAPEG00000009893)	PRR12 (ENSAPEG00000009803) ##16	ENSAPEG00000009714	ENSAPEG00000009640	ENSAPEG00000009611	ENSAPEG00000009505	ENSAPEG00000009411	dnaaf3 (ENSAPEG00000009358)
Clown anemonefish	MODERN SPECIES	2063	ENSAOCG00000021053	ENSAOCG00000021160	cabp5a (ENSAOCG00000021285)	nif3l1 (ENSAOCG00000021304)	tbx6 (ENSAOCG00000021325)	zgc:92040 (ENSAOCG00000021380)	eif3c (ENSAOCG00000021466)	ENSAOCG00000021533	ENSAOCG00000021567	aldoaa (ENSAOCG00000021595)	ENSAOCG00000021713	ENSAOCG00000021848	vkorc1 (ENSAOCG00000021862)	mapk7 (ENSAOCG00000021896)	zgc:92313 (ENSAOCG00000021973)	pax10 (ENSAOCG00000022010) ##22	ENSAOCG00000022063	ENSAOCG00000022076
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.t	ENSGT00940000154838.B.s	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.t	ENSGT00940000154838.B.s	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000026305	ENSORLG00000006342	ENSORLG00000006351	aldoab (ENSORLG00000006367)	ENSORLG00000006425	ENSORLG00000022047	ENSORLG00000027636	ENSORLG00000030517	ENSORLG00000022076	ENSORLG00000029203	ENSORLG00000027663	ENSORLG00000006549	vkorc1 (ENSORLG00000006556)	mapk7 (ENSORLG00000006580)	zgc:92313 (ENSORLG00000006587)	pax10 (ENSORLG00000022202) ##22	ENSORLG00000006594	ca15b (ENSORLG00000006603)	ENSORLG00000006612	ENSORLG00000029954	trpm4b.2 (ENSORLG00000006658)	am5 (ENSORLG00000027886)	ENSORLG00000006692	irf3 (ENSORLG00000006703)	ENSORLG00000026683 ##16	ENSORLG00000006753	ENSORLG00000006807	TNNT1 (ENSORLG00000006832)	dnaaf3 (ENSORLG00000006843)	syt5b (ENSORLG00000006860)	zgc:56095 (ENSORLG00000025196)
Chinese medaka	MODERN SPECIES	177														vkorc1 (ENSOSIG00000007847)	mapk7 (ENSOSIG00000007849)	pax10 (ENSOSIG00000007854) ##22	ENSOSIG00000007856
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900.y	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.t	ENSGT00940000154838.B.s	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Javanese ricefish	MODERN SPECIES	10	cabp5a (ENSOJAG00000023764)	nif3l1 (ENSOJAG00000023765)	ENSOJAG00000023766	zgc:92040 (ENSOJAG00000023774)	EIF3C (ENSOJAG00000023784)	ENSOJAG00000023786	ENSOJAG00000023794	ENSOJAG00000023795	aldoaa (ENSOJAG00000023797)	ENSOJAG00000023804	ENSOJAG00000023833	ENSOJAG00000011928	vkorc1 (ENSOJAG00000011971)	mapk7 (ENSOJAG00000011984)	zgc:92313 (ENSOJAG00000011991)	pax10 (ENSOJAG00000012004) ##22	ENSOJAG00000012068	ca15b (ENSOJAG00000012075)	ENSOJAG00000012085	ENSOJAG00000012100	trpm4b.2 (ENSOJAG00000012133)	ENSOJAG00000012556	irf3 (ENSOJAG00000012580)	PRR12 (ENSOJAG00000012600) ##16	ENSOJAG00000012739	ENSOJAG00000013459	ENSOJAG00000014228	dnaaf3 (ENSOJAG00000014525)	syt5b (ENSOJAG00000014542)	zgc:56095 (ENSOJAG00000014550)	ENSOJAG00000014559
Indian medaka	MODERN SPECIES	17	TAOK2 (ENSOMEG00000020670)	cabp5a (ENSOMEG00000020576)	nif3l1 (ENSOMEG00000020535)	ENSOMEG00000020516	zgc:92040 (ENSOMEG00000020500)	eif3c (ENSOMEG00000020450)	ENSOMEG00000020393	ENSOMEG00000020358	aldoaa (ENSOMEG00000020310)	ENSOMEG00000020269	ENSOMEG00000020169	ENSOMEG00000019924	vkorc1 (ENSOMEG00000019448)	mapk7 (ENSOMEG00000019435)	zgc:92313 (ENSOMEG00000019411)	pax10 (ENSOMEG00000019358) ##22	ENSOMEG00000019333	ca15b (ENSOMEG00000019318)	ENSOMEG00000019299	ENSOMEG00000019275	ENSOMEG00000019259	trpm4b.2 (ENSOMEG00000019187)	ENSOMEG00000018905	ENSOMEG00000018887	irf3 (ENSOMEG00000018875)	PRR12 (ENSOMEG00000018859) ##16	ENSOMEG00000018776	ENSOMEG00000018675	dnaaf3 (ENSOMEG00000018585)	ENSOMEG00000018552	syt5b (ENSOMEG00000018516)
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
NAME_4	ANCESTRAL SPECIES	15	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.B	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481
Mummichog	MODERN SPECIES	2201												ENSFHEG00000003317	vkorc1 (ENSFHEG00000002981)	mapk7 (ENSFHEG00000002976)	zgc:92313 (ENSFHEG00000002969)	pax10 (ENSFHEG00000002957) ##22	ENSFHEG00000002942	ca15b (ENSFHEG00000002927)	ENSFHEG00000002919	ENSFHEG00000002907	trpm4b.2 (ENSFHEG00000002896)	ENSFHEG00000000081	ENSFHEG00000002871	irf3 (ENSFHEG00000002859)	PRR12 (ENSFHEG00000002828) ##16	ENSFHEG00000002792	ENSFHEG00000002753	TNNT1 (ENSFHEG00000002673)	dnaaf3 (ENSFHEG00000002524)	syt5b (ENSFHEG00000002516)	zgc:56095 (ENSFHEG00000002467)
Sheepshead minnow	MODERN SPECIES	789			nif3l1 (ENSCVAG00000005224)	tbx6 (ENSCVAG00000005247)	zgc:92040 (ENSCVAG00000005330)	eif3c (ENSCVAG00000005402)	ENSCVAG00000005419	zgc:123217 (ENSCVAG00000005424)	aldoaa (ENSCVAG00000005448)	ENSCVAG00000005501	ENSCVAG00000005545	ENSCVAG00000005580	vkorc1 (ENSCVAG00000005598)	mapk7 (ENSCVAG00000005609)	zgc:92313 (ENSCVAG00000005616)	pax10 (ENSCVAG00000000162) ##22	ENSCVAG00000005704	ca15b (ENSCVAG00000005719)	ENSCVAG00000005769	ENSCVAG00000005795	ENSCVAG00000005808	trpm4b.2 (ENSCVAG00000005822)	ENSCVAG00000005830	ENSCVAG00000005840	irf3 (ENSCVAG00000005848)	PRR12 (ENSCVAG00000005857) ##16	ENSCVAG00000005907	ENSCVAG00000005948	TNNT1 (ENSCVAG00000005961)	ENSCVAG00000006049	ENSCVAG00000006102
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000174097	ENSGT00940000167101.d	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.n	ENSGT00940000154838.B.m	ENSGT00940000163009.b.a.a.b.a.w	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000174097	ENSGT00940000167101.d	ENSGT00940000163009.b.a.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B.n	ENSGT00940000154838.B.m.a	ENSGT00940000154838.B.m.b	ENSGT00940000163009.b.a.a.b.a.w	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000164039.b.b	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e.c	ENSGT00390000002069	ENSGT00940000166481
NAME_6	ANCESTRAL SPECIES	118										ENSGT00940000154838.B.m.b	ENSGT00940000163009.b.a.a.b.a.w	ENSGT00940000163852.c.a.b.a.b	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000168281	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e.c	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630
Sailfin molly	MODERN SPECIES	2381																pax10 (ENSPLAG00000000450) ##22	ENSPLAG00000020722	ca15a (ENSPLAG00000020807)	ENSPLAG00000020848	ENSPLAG00000020909
Amazon molly	MODERN SPECIES	753									ENSPFOG00000023043	ENSPFOG00000022747	ENSPFOG00000004738	ENSPFOG00000004506	vkorc1 (ENSPFOG00000004704)	mapk7 (ENSPFOG00000004596)	zgc:92313 (ENSPFOG00000023554)	pax10 (ENSPFOG00000004477) ##22	ENSPFOG00000004315	ca15b (ENSPFOG00000004124)	ENSPFOG00000004049	ENSPFOG00000021676	trpm4b.2 (ENSPFOG00000003259)	ENSPFOG00000003219	ENSPFOG00000003053	irf3 (ENSPFOG00000002906)	PRR12 (ENSPFOG00000002783) ##16	ENSPFOG00000002510	ENSPFOG00000002310	ENSPFOG00000002294
Guppy	MODERN SPECIES	449	zgc:92040 (ENSPREG00000023135)	eif3c (ENSPREG00000023139)	ADPRH (ENSPREG00000023144)	ENSPREG00000023149	ENSPREG00000023152	zgc:123217 (ENSPREG00000023154)	aldoaa (ENSPREG00000023156)	ENSPREG00000023158	ENSPREG00000023163	ENSPREG00000023166	ENSPREG00000023170	ENSPREG00000023176	vkorc1 (ENSPREG00000023181)	mapk7 (ENSPREG00000023182)	zgc:92313 (ENSPREG00000023183)	pax10 (ENSPREG00000023186) ##22	ENSPREG00000023187	ca15b (ENSPREG00000023192)	ENSPREG00000023196	ENSPREG00000023198	trpm4b.2 (ENSPREG00000023199)	ENSPREG00000023202	MED1 (ENSPREG00000023204)	neurod2 (ENSPREG00000023206)	PPP1R1B (ENSPREG00000023208)	PNMT (ENSPREG00000023209)	ENSPREG00000023210	aldh18a1 (ENSPREG00000000574)	ENSPREG00000000668	crygmxl2 (ENSPREG00000000690)	tcf7l2 (ENSPREG00000000741)
Platyfish	MODERN SPECIES	1	ENSXMAG00000025641	zgc:92040 (ENSXMAG00000013800)	eif3c (ENSXMAG00000013796)	ADPRH (ENSXMAG00000024877)	ENSXMAG00000028781	ENSXMAG00000024988	aldoaa (ENSXMAG00000013788)	ENSXMAG00000013787	ENSXMAG00000010673	ENSXMAG00000013785	ENSXMAG00000013783	ENSXMAG00000025167	vkorc1 (ENSXMAG00000025141)	mapk7 (ENSXMAG00000013778)	zgc:92313 (ENSXMAG00000026359)	pax10 (ENSXMAG00000020826) ##22	ENSXMAG00000025902	ENSXMAG00000021743	ENSXMAG00000010346	ENSXMAG00000010353	trpm4b.2 (ENSXMAG00000010357)	ENSXMAG00000005958	ENSXMAG00000013760	irf3 (ENSXMAG00000013755)	PRR12 (ENSXMAG00000028710) ##16	ENSXMAG00000013739	CPT1C (ENSXMAG00000013733)	ENSXMAG00000013729	dnaaf3 (ENSXMAG00000013722)	syt5b (ENSXMAG00000013704)	zgc:56095 (ENSXMAG00000026717)
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00940000158525.t	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00940000167101.d	ENSGT00940000163160.a	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000165867.A	ENSGT00940000164039.a	ENSGT00940000164039.b.a	ENSGT00940000158693.B	ENSGT00940000169535	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569	ENSGT00440000037417.B.b ##16	ENSGT00940000164511.A	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481	ENSGT00940000167630	ENSGT00940000165368
Mangrove rivulus	MODERN SPECIES	43												ENSKMAG00000016113	vkorc1 (ENSKMAG00000016095)	mapk7 (ENSKMAG00000016055)	zgc:92313 (ENSKMAG00000016040)	pax10 (ENSKMAG00000016028) ##22	ENSKMAG00000016014	ca15b (ENSKMAG00000015991)	ENSKMAG00000015970	ENSKMAG00000015953	trpm4b.2 (ENSKMAG00000015862)	ENSKMAG00000015825	ENSKMAG00000015798	irf3 (ENSKMAG00000015661)	ENSKMAG00000015609 ##16	ENSKMAG00000015527	ENSKMAG00000015476	TNNT1 (ENSKMAG00000015319)	dnaaf3 (ENSKMAG00000015240)	syt5b (ENSKMAG00000015219)	zgc:56095 (ENSKMAG00000015185)
Turquoise killifish	MODERN SPECIES	1621	TAOK2 (ENSNFUG00015009525)	cabp5a (ENSNFUG00015009881)	nif3l1 (ENSNFUG00015009899)	ENSNFUG00015009908	zgc:92040 (ENSNFUG00015009928)	EIF3C (ENSNFUG00015009980)	NCR3LG1 (ENSNFUG00015010057)	ENSNFUG00015010092	ALDOAA (ENSNFUG00015010155)	ENSNFUG00015010198	Nfu_g_1_022803 (ENSNFUG00015010382)	ENSNFUG00015010653	VKORC1 (ENSNFUG00015011282)	MAPK7 (ENSNFUG00015011295)	PRSS22 (ENSNFUG00015011301)	pax10 (ENSNFUG00015011310) ##22	CABZ01030094.1 (ENSNFUG00015011316)	ca15b (ENSNFUG00015011337)	ENSNFUG00015011362	trpm4b.2 (ENSNFUG00015011475)	CABZ01030107.1 (ENSNFUG00015012043)	ENSNFUG00015012056	irf3 (ENSNFUG00015012079)	PRR12 (ENSNFUG00015012083) ##16	ENSNFUG00015012146	CABZ01055343.2 (ENSNFUG00015012632)	TNNT1 (ENSNFUG00015013522)	DNAAF3 (ENSNFUG00015013718)	SYT5B (ENSNFUG00015013733)	OLA.3497 (ENSNFUG00015013739)	ENSNFUG00015013756
Protacanthopterygii	ANCESTRAL SPECIES	69	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900	ENSGT00930000151040.a.a	ENSGT00940000167101	ENSGT00930000151040.b	ENSGT00950000182987.c.a.a.lb	ENSGT00940000154838.B	ENSGT00940000163009.b.a.a.b.a	ENSGT00940000157421	ENSGT00940000160215	ENSGT00940000166391	ENSGT00940000155391.b ##22	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00800000125268	ENSGT00390000014595.a.b	ENSGT00940000165867.B	ENSGT00940000165867.A
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	4	cabp5a (ENSELUG00000022390)	nif3l1 (ENSELUG00000022359)	tbx6 (ENSELUG00000022346)	zgc:92040 (ENSELUG00000022325)	eif3c (ENSELUG00000022257)	ppp4cb (ENSELUG00000022067)	ENSELUG00000022061	ALDOA (ENSELUG00000022034)	ENSELUG00000021962	ENSELUG00000027193	ENSELUG00000029364	ENSELUG00000004359	vkorc1 (ENSELUG00000004329)	mapk7 (ENSELUG00000004315)	zgc:92313 (ENSELUG00000001255)	ENSELUG00000004278 ##22	ENSELUG00000030839	ENSELUG00000004258	trpm4b.2 (ENSELUG00000004233)	ENSELUG00000004190	ENSELUG00000004176	irf3 (ENSELUG00000004147)	PRR12 (ENSELUG00000004113) ##16	cpn1 (ENSELUG00000004075)	ENSELUG00000004059	dnmbp (ENSELUG00000004038)	nrap (ENSELUG00000024627)	casp7 (ENSELUG00000001036)	dclre1a (ENSELUG00000024586)	NHLRC2 (ENSELUG00000001035)	ENSELUG00000034213
Northern pike	MODERN SPECIES	10	AP2A1 (ENSELUG00000005335)	prmt1 (ENSELUG00000027996)	ENSELUG00000005091	rras (ENSELUG00000005079)	prrg2 (ENSELUG00000005038) ##17	PRR12 (ENSELUG00000004989) ##16	ENSELUG00000004937	ENSELUG00000004916	trpm4a (ENSELUG00000004871)	trpm4a (ENSELUG00000006005)	trpm4a (ENSELUG00000006106)	ENSELUG00000006041	ENSELUG00000006046	nosip (ENSELUG00000031072)	rcn3 (ENSELUG00000029871) ##21	pax10 (ENSELUG00000029054) ##22	ENSELUG00000006261	tspan4b (ENSELUG00000029818)	ENSELUG00000006296	ENSELUG00000006320	ENSELUG00000006348	ENSELUG00000024998	ENSELUG00000030881	ENSELUG00000022116	ENSELUG00000005640	ENSELUG00000033346	ENSELUG00000011940
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	409	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b	ENSGT00940000160972.a	ENSGT00940000158268.b.a ##17	ENSGT00440000037417.B.a.e.a ##16	ENSGT00950000183205.b.a.b.a.a.m	ENSGT00730000111459	ENSGT00390000015505	ENSGT01010000222360.D.a.h ##21	ENSGT00940000155391.b.q.a ##22	ENSGT00940000154318.B	ENSGT00940000165851.e
Salmoninae_a	ANCESTRAL SPECIES	60			ENSGT00940000154700.e	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000167194.a	ENSGT00940000160972.b	ENSGT00940000158268.b.b ##17	ENSGT00440000037417.B.a.f ##16	ENSGT00440000037417.B.a.e.b ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183205.b.a.b.a.a.n	ENSGT00940000158693.A.e.a	ENSGT00940000158693.A.e.b	ENSGT00390000015505	ENSGT01010000222360.D.a.h ##21	ENSGT00940000155391.b.q.a ##22	ENSGT00940000154318.B	ENSGT00940000165851.e	ENSGT00940000165867.B	ENSGT00930000151040.b.b	ENSGT00390000003249.k	ENSGT00940000163009.a	ENSGT00950000182987.c.a.a.lb.e.b	ENSGT01030000235138	ENSGT00940000163852.c.a.b.b.b.b	ENSGT00940000163009.b.a.a.b.b.f.b	ENSGT00940000157290.jb	ENSGT00940000159512.e.b	ENSGT00940000157290.kb	ENSGT00940000163009.b.a.a.b.b.f.a	ENSGT00940000159512.e.a.a
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000180096.b	ENSGT00940000154700.e	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000167194.a	ENSGT00940000160972.b	ENSGT00940000158268.b.b ##17	ENSGT00440000037417.B.a.f ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT01020000232005	ENSGT00950000183205.b.a.b.a.a.m.b	ENSGT00940000158693.A.e.a	ENSGT00940000158693.A.e.b	ENSGT01040000240919	ENSGT00390000015505	ENSGT01010000222360.D.a.h ##21	ENSGT00940000155391.b.q.a ##22	ENSGT00940000154318.B	ENSGT00940000165851.e	ENSGT00940000165867.B	ENSGT00930000151040.b.b	ENSGT00950000182987.c.a.a.lb.e.b	ENSGT01030000235138	ENSGT00940000163852.c.a.b.b.b.b	ENSGT00940000163009.b.a.a.b.b.f.b	ENSGT00940000157290.jb	ENSGT00940000157290.kb	ENSGT00940000163009.b.a.a.b.b.f.a	ENSGT00940000159512.e.a.a	ENSGT00940000164039.b.b	ENSGT00390000001557.g	ENSGT00940000166574.f
Atlantic salmon	MODERN SPECIES	22	prmt1 (ENSSSAG00000000712)	ENSSSAG00000065016	ENSSSAG00000001232	rras (ENSSSAG00000098374)	ENSSSAG00000117289	ENSSSAG00000072342 ##16	ENSSSAG00000001275	ENSSSAG00000001297	ENSSSAG00000103476	trpm4a (ENSSSAG00000121637)	trpm4a (ENSSSAG00000001367)	ENSSSAG00000108063	ENSSSAG00000089935	nosip (ENSSSAG00000083323)	rcn3 (ENSSSAG00000121730) ##21	pax10 (ENSSSAG00000001502) ##22	bcl2l12 (ENSSSAG00000001510)	ENSSSAG00000001521	ENSSSAG00000072405	aldoaa (ENSSSAG00000001563)	ENSSSAG00000001571	ENSSSAG00000104291	fus (ENSSSAG00000001599)	ENSSSAG00000090251	kat8 (ENSSSAG00000001624)	ENSSSAG00000001665	rnf25 (ENSSSAG00000001686)	ENSSSAG00000001707	thoc6 (ENSSSAG00000001724)	srrm2 (ENSSSAG00000119729)	ENSSSAG00000110590
River trout	MODERN SPECIES	25	ENSSTUG00000021245	lin7b (ENSSTUG00000021278) ##33	ENSSTUG00000021474	prmt1 (ENSSTUG00000021688)	AP2A1 (ENSSTUG00000022231)	ENSSTUG00000023056	rras (ENSSTUG00000023069)	prrg2 (ENSSTUG00000023086) ##17	PRR12 (ENSSTUG00000023092) ##16	ENSSTUG00000023108	ENSSTUG00000023142	ENSSTUG00000023150	trpm4a (ENSSTUG00000023198)	nosip (ENSSTUG00000023601)	rcn3 (ENSSTUG00000023629) ##21	pax10 (ENSSTUG00000023656) ##22	ENSSTUG00000023671	tspan4b (ENSSTUG00000023690)	ENSSTUG00000023711	PPP4C (ENSSTUG00000023757)	cln3 (ENSSTUG00000023774)	ENSSTUG00000023797	ALDOA (ENSSTUG00000023807)	ENSSTUG00000023824	zgc:100868 (ENSSTUG00000023851)	ENSSTUG00000023967	ENSSTUG00000024029	fus (ENSSTUG00000024048)	kat8 (ENSSTUG00000024153)	ENSSTUG00000024390	rnf25 (ENSSTUG00000024416)
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000153222.a.b.a ##33	ENSGT00940000180096.b	ENSGT00940000154700.e	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000167194.a	ENSGT00940000160972.b	ENSGT00940000158268.b.b ##17	ENSGT00440000037417.B.a.f ##16	ENSGT00440000037417.B.a.e.b.a ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183205.b.a.b.a.a.n	ENSGT00940000158693.A.e.a	ENSGT00940000158693.A.e.b	ENSGT00390000015505	ENSGT01010000222360.D.a.h ##21	ENSGT00940000155391.b.q.a ##22	ENSGT00940000154318.B	ENSGT00940000165851.e	ENSGT00940000165867.B	ENSGT00930000151040.b.b	ENSGT00390000003249.k	ENSGT00940000163009.a	ENSGT00950000182987.c.a.a.lb.e.b	ENSGT01030000235138	ENSGT00940000163009.b.a.a.b.b.f.b	ENSGT00940000157290.kb	ENSGT00940000163009.b.a.a.b.b.f.a	ENSGT01100000263742	ENSGT00940000157290.jb	ENSGT00940000159512.e.b	ENSGT00940000164039.b.b
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000026079	ENSOMYG00000076201	ENSOMYG00000027569	rras (ENSOMYG00000075383)	prrg2 (ENSOMYG00000016315) ##17	ENSOMYG00000016325 ##16	ENSOMYG00000016334 ##16	ENSOMYG00000016361	ENSOMYG00000073247	ENSOMYG00000070569	trpm4a (ENSOMYG00000016478)	ENSOMYG00000050375	trpm4a (ENSOMYG00000016667)	nosip (ENSOMYG00000016738)	rcn3 (ENSOMYG00000016807) ##21	pax10 (ENSOMYG00000016835) ##22	ENSOMYG00000016852	tspan4b (ENSOMYG00000016868)	ENSOMYG00000016888	ENSOMYG00000069699	pp4c (ENSOMYG00000017028)	ENSOMYG00000017049	ENSOMYG00000017054	ENSOMYG00000017084	ENSOMYG00000057768	ENSOMYG00000057550	ENSOMYG00000017110	ENSOMYG00000017191	ENSOMYG00000017207	ENSOMYG00000017235	ENSOMYG00000061135
Oncorhynchus_a	ANCESTRAL SPECIES	49	ENSGT00940000155286.m.b	ENSGT00940000153222.a.b.a ##33	ENSGT00940000180096.b	ENSGT00940000154700.e	ENSGT00950000182838.A.a.a.k.a	ENSGT00940000167194.a	ENSGT00940000160972.b	ENSGT00940000158268.b.b ##17	ENSGT00440000037417.B.a.f ##16	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183205.b.a.b.a.a.n	ENSGT00940000158693.A.e.a	ENSGT00940000158693.A.e.b	ENSGT00390000015505	ENSGT01010000222360.D.a.h ##21	ENSGT00940000155391.b.q.a ##22	ENSGT00940000154318.B	ENSGT00940000165851.e	ENSGT00940000165867.B	ENSGT00930000151040.b.b	ENSGT00390000003249.k.a	ENSGT00940000163009.a	ENSGT00950000182987.c.a.a.lb.e.b	ENSGT01030000235138	ENSGT00940000163009.b.a.a.b.b.f.b	ENSGT00940000157290.kb	ENSGT00940000163009.b.a.a.b.b.f.a	ENSGT01100000263742	ENSGT00940000157290.jb	ENSGT00940000159512.e.b	ENSGT00940000164039.b.b
Coho salmon	MODERN SPECIES	26	ENSOKIG00005027113	ENSOKIG00005027124	prmt1 (ENSOKIG00005027306)	AP2A1 (ENSOKIG00005030654)	ENSOKIG00005031078	rras (ENSOKIG00005031098)	prrg2 (ENSOKIG00005031121) ##17	ENSOKIG00005031150 ##16	ENSOKIG00005031203	ENSOKIG00005031480	trpm4a (ENSOKIG00005031512)	ENSOKIG00005031621	ENSOKIG00005031626	rcn3 (ENSOKIG00005031634) ##21	nosip (ENSOKIG00005031656)	pax10 (ENSOKIG00005031686) ##22	ENSOKIG00005031703	tspan4b (ENSOKIG00005031719)	ENSOKIG00005031752	ENSOKIG00005031760	PPP4C (ENSOKIG00005031768)	CLN3 (ENSOKIG00005031790)	ENSOKIG00005031810	ENSOKIG00005031826	CLN3 (ENSOKIG00005031852)	ENSOKIG00005031898	ALDOA (ENSOKIG00005031930)	ENSOKIG00005031964	ENSOKIG00005031985	ENSOKIG00005032076	fus (ENSOKIG00005032146)
Salmoninae	ANCESTRAL SPECIES	987															ENSGT01010000222360.D.a.g.a ##21	ENSGT00940000155391.b.q.b ##22	ENSGT00940000165851.f	ENSGT00800000125268	ENSGT00930000151040.b.a	ENSGT00950000182987.c.a.a.lb.e.a
Salmoninae_a	ANCESTRAL SPECIES	120	ENSGT00940000153496.a.a.r.b.a	ENSGT00940000153496.a.a.r.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b	ENSGT00940000160972.a	ENSGT00940000158268.b.a ##17	ENSGT00440000037417.B.a.e.a ##16	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT01010000222360.D.a.g.a ##21	ENSGT00940000155391.b.q.b ##22	ENSGT00940000165851.f	ENSGT00930000151040.b.a	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00940000166574.e	ENSGT00390000015278.l	ENSGT00940000167070.b	ENSGT00970000197626	ENSGT00940000161514.a	ENSGT00940000160759.d	ENSGT00940000160691.a	ENSGT00390000017405.h	ENSGT00500000045140.a.a.e	ENSGT00940000164922.g.a.d	ENSGT00530000063743.a.h	ENSGT00950000183191.a.a.e.a.b
Oncorhynchus	ANCESTRAL SPECIES		ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.b.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT00940000158837.g.b.b	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b	ENSGT00940000160972.a	ENSGT00940000158268.b.a ##17	ENSGT00440000037417.B.a.e.a ##16	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00940000155391.b.q.b ##22	ENSGT00940000165851.f	ENSGT00930000151040.b.a	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00940000159512.f	ENSGT00940000166574.e	ENSGT00940000161127	ENSGT00940000161514.a	ENSGT00940000160759.d	ENSGT00940000160691.a	ENSGT00390000017405.h	ENSGT00500000045140.a.a.e	ENSGT00940000164922.g.a.d	ENSGT00530000063743.a.h	ENSGT00950000183191.a.a.e.a.b	ENSGT00940000157795.g.b.f
Rainbow trout	MODERN SPECIES	22	tmem11 (ENSOMYG00000046436)	ENSOMYG00000046434	ENSOMYG00000046426	ENSOMYG00000074210	ENSOMYG00000071171	ENSOMYG00000046415	prmt1 (ENSOMYG00000024072)	ENSOMYG00000046268	ENSOMYG00000046218	rras (ENSOMYG00000050105)	tmg2 (ENSOMYG00000046212) ##17	ENSOMYG00000062437 ##16	ENSOMYG00000069771	ENSOMYG00000046206	ENSOMYG00000050339	ENSOMYG00000046188 ##22	ENSOMYG00000046180	ENSOMYG00000046168	ENSOMYG00000046145	ENSOMYG00000052713	ENSOMYG00000046091	ENSOMYG00000046063	ENSOMYG00000046052	ENSOMYG00000071681	ypel3 (ENSOMYG00000067517)	gdpd3a (ENSOMYG00000046033)	mapk3 (ENSOMYG00000045959)	nudt9 (ENSOMYG00000045938)	ENSOMYG00000018174	ENSOMYG00000059308	ENSOMYG00000045914
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.b.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT00940000158837.g.b.b	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b	ENSGT00940000160972.a	ENSGT00940000158268.b.a ##17	ENSGT00440000037417.B.a.e.a ##16	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT00940000155391.b.q.b ##22	ENSGT00940000165851.f	ENSGT00970000197626	ENSGT00930000151040.b.a	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00940000159512.f	ENSGT00940000166574.e	ENSGT00940000161127	ENSGT00940000161514.a	ENSGT00940000160759.d	ENSGT00940000160691.a	ENSGT00390000017405.h	ENSGT00500000045140.a.a.e	ENSGT00940000164922.g.a.d	ENSGT00530000063743.a.h	ENSGT00950000183191.a.a.e.b
Coho salmon	MODERN SPECIES	1	ENSOKIG00005029815	jpt2 (ENSOKIG00005029781)	CRAMP1 (ENSOKIG00005029739)	tmem11 (ENSOKIG00005029724)	ENSOKIG00005029359	ENSOKIG00005029333	ENSOKIG00005029316	prmt1 (ENSOKIG00005026770)	AP2A1 (ENSOKIG00005026192)	ENSOKIG00005026159	rras (ENSOKIG00005026149)	ENSOKIG00005026144	prrg2 (ENSOKIG00005026133) ##17	PRR12 (ENSOKIG00005026008) ##16	ENSOKIG00005025977	ENSOKIG00005025951 ##22	ENSOKIG00005025936	ENSOKIG00005025926	PPP4C (ENSOKIG00005025908)	ALDOA (ENSOKIG00005025885)	KAT8 (ENSOKIG00005025304)	ENSOKIG00005025205	ENSOKIG00005025163	ypel3 (ENSOKIG00005025129)	gdpd3a (ENSOKIG00005025099)	mapk3 (ENSOKIG00005024341)	nudt9 (ENSOKIG00005024258)	ENSOKIG00005024209	ENSOKIG00005024048	ENSOKIG00005023931	sh2b1 (ENSOKIG00005023894)
Chinook salmon	MODERN SPECIES		spsb3a (ENSOTSG00005009412)	mapk8ip3 (ENSOTSG00005009375)	CRAMP1 (ENSOTSG00005009373)	tmem11 (ENSOTSG00005009371)	ENSOTSG00005009357	ENSOTSG00005009356	ENSOTSG00005009346	prmt1 (ENSOTSG00005008317)	AP2A1 (ENSOTSG00005007807)	ENSOTSG00005007801	rras (ENSOTSG00005007799)	prrg2 (ENSOTSG00005007797) ##17	PRR12 (ENSOTSG00005007728) ##16	ENSOTSG00005007726	ENSOTSG00005007724	pax10 (ENSOTSG00005007722) ##22	tspan4b (ENSOTSG00005007721)	ENSOTSG00005007719	PPP4C (ENSOTSG00005007716)	ALDOA (ENSOTSG00005007379)	ENSOTSG00005007377	ENSOTSG00005007375	ypel3 (ENSOTSG00005007374)	gdpd3a (ENSOTSG00005007372)	mapk3 (ENSOTSG00005006178)	nudt9 (ENSOTSG00005006165)	ENSOTSG00005006163	ENSOTSG00005006162	rabep2 (ENSOTSG00005006154)	ENSOTSG00005006153	ENSOTSG00005006152
Salmo	ANCESTRAL SPECIES	64	ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b	ENSGT00940000160972.a	ENSGT00940000158268.b.a ##17	ENSGT00440000037417.B.a.e.a ##16	ENSGT00950000183205.b.a.b.a.a.m.a	ENSGT01010000222360.D.a.g.a ##21	ENSGT00940000155391.b.q.b ##22	ENSGT00940000165851.f	ENSGT00930000151040.b.a	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00940000159512.e.a.b	ENSGT00390000001557.h	ENSGT00940000166574.e	ENSGT00390000015278.l	ENSGT00940000167070.b	ENSGT00970000197626	ENSGT00940000161514.a	ENSGT00940000160759.d	ENSGT00940000160691.a	ENSGT00390000017405.h	ENSGT00500000045140.a.a.e	ENSGT00940000164922.g.a.d
Atlantic salmon	MODERN SPECIES	15	jpt2 (ENSSSAG00000095240)	ENSSSAG00000061415	tmem11 (ENSSSAG00000000270)	ENSSSAG00000105245	ENSSSAG00000095953	ENSSSAG00000097370	prmt1 (ENSSSAG00000061870)	ENSSSAG00000001001	ENSSSAG00000072315	rras (ENSSSAG00000072324)	prrg2 (ENSSSAG00000072333) ##17	ENSSSAG00000072339 ##16	ENSSSAG00000102493	ENSSSAG00000100366	rcn3 (ENSSSAG00000072371) ##21	pax10 (ENSSSAG00000099454) ##22	ENSSSAG00000082459	ENSSSAG00000118112	ALDOA (ENSSSAG00000072436)	kat8 (ENSSSAG00000072454)	rnf25 (ENSSSAG00000072594)	ENSSSAG00000087917	thoc6 (ENSSSAG00000072614)	srrm2 (ENSSSAG00000072620)	ENSSSAG00000072625	ypel3 (ENSSSAG00000095818)	gdpd3a (ENSSSAG00000119028)	mk03 (ENSSSAG00000072637)	nudt9 (ENSSSAG00000072771)	ENSSSAG00000072774	ENSSSAG00000072851
River trout	MODERN SPECIES	33	mapk8ip3 (ENSSTUG00000029202)	jpt2 (ENSSTUG00000029523)	CRAMP1 (ENSSTUG00000029545)	tmem11 (ENSSTUG00000029578)	ENSSTUG00000029582	ENSSTUG00000029588	prmt1 (ENSSTUG00000029625)	AP2A1 (ENSSTUG00000030784)	ENSSTUG00000031326	rras (ENSSTUG00000031339)	ENSSTUG00000031349	prrg2 (ENSSTUG00000031352) ##17	PRR12 (ENSSTUG00000031372) ##16	ENSSTUG00000031441	rcn3 (ENSSTUG00000031504) ##21	pax10 (ENSSTUG00000031563) ##22	tspan4b (ENSSTUG00000031578)	PPP4C (ENSSTUG00000031613)	ALDOA (ENSSTUG00000031661)	kat8 (ENSSTUG00000031761)	ENSSTUG00000032561	rnf25 (ENSSTUG00000032563)	ENSSTUG00000032581	thoc6 (ENSSTUG00000032616)	srrm2 (ENSSTUG00000033001)	ENSSTUG00000033038	ypel3 (ENSSTUG00000033047)	gdpd3a (ENSSTUG00000033054)	nudt9 (ENSSTUG00000033588)	ENSSTUG00000033737	atp2a1 (ENSSTUG00000033861)
Huchen	MODERN SPECIES	148														zranb2 (ENSHHUG00000034778)	rcn3 (ENSHHUG00000034789) ##21	pax10 (ENSHHUG00000034800) ##22	tspan4b (ENSHHUG00000034812)	ENSHHUG00000034816	PPP4C (ENSHHUG00000034819)	ALDOA (ENSHHUG00000034863)	kat8 (ENSHHUG00000034994)	rnf25 (ENSHHUG00000035036)	ENSHHUG00000035058	ENSHHUG00000035072	srrm2 (ENSHHUG00000035086)	ENSHHUG00000035124	ypel3 (ENSHHUG00000035129)	gdpd3a (ENSHHUG00000035142)	mapk3 (ENSHHUG00000035192)	ENSHHUG00000035286	atp2a1 (ENSHHUG00000035305)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155391.b.r ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155391.b.r ##22
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00940000157795.g.a	ENSGT00530000063627.b	ENSGT00940000159141.j.b	ENSGT00940000161103.b	ENSGT00940000159632	ENSGT00390000016049	ENSGT01010000222313.A.b.b.a.a.b	ENSGT00940000158525.t.g.b	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00390000017900.hb.b	ENSGT00940000167101	ENSGT00940000154838.B	ENSGT00950000182987.c.a.a.lb.f.a	ENSGT00940000155391.b.r ##22	ENSGT00950000183067.a.b.b.wb	ENSGT00940000160595.a.b.d	ENSGT00940000156754.a.b.b.g	ENSGT00440000037417.B.b.a ##16	ENSGT00940000160569	ENSGT00940000158693.B
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000074671	ENSOMYG00000045436	ENSOMYG00000045442	pagr1 (ENSOMYG00000045449)	ENSOMYG00000068558	ENSOMYG00000045460	ENSOMYG00000045468	ENSOMYG00000045506	cabp5a (ENSOMYG00000010987)	nif3l1 (ENSOMYG00000011007)	ENSOMYG00000011073	ENSOMYG00000072263	ENSOMYG00000011178	ENSOMYG00000011263	ENSOMYG00000011371	ENSOMYG00000011386 ##22	ENSOMYG00000075007	ENSOMYG00000011404	ENSOMYG00000059882	ENSOMYG00000011417	ENSOMYG00000064065	ENSOMYG00000011433	ENSOMYG00000011439	ENSOMYG00000054784	ENSOMYG00000051678	ENSOMYG00000011448 ##16	ENSOMYG00000011453	ENSOMYG00000048550	trpm4b.2 (ENSOMYG00000011505)	ENSOMYG00000064183	ENSOMYG00000011628
Oncorhynchus_a	ANCESTRAL SPECIES	84	ENSGT00940000157795.g.a	ENSGT00530000063627.b	ENSGT00940000159141.j.b	ENSGT00940000161103.b	ENSGT00940000159632	ENSGT00390000016049	ENSGT01010000222313.A.b.b.a.a.b	ENSGT00940000158525.t.g.b	ENSGT00940000159991.B	ENSGT00940000160506.a	ENSGT00390000003590	ENSGT00390000017900.hb.b	ENSGT00940000167101	ENSGT00940000154838.B	ENSGT00950000182987.c.a.a.lb.f.a	ENSGT00940000155391.b.r ##22	ENSGT00950000183067.a.b.b.wb	ENSGT00940000160595.a.b.d	ENSGT00940000156754.a.b.b.g	ENSGT00440000037417.B.b.a ##16	ENSGT00940000160569	ENSGT00940000158693.B
Chinook salmon	MODERN SPECIES	16	ENSOTSG00005003277	adprh (ENSOTSG00005003274)	DOC2A (ENSOTSG00005003215)	ENSOTSG00005002659	kif22 (ENSOTSG00005046231)	pagr1 (ENSOTSG00005046230)	tlcd3ba (ENSOTSG00005046229)	ENSOTSG00005046228	TAOK2 (ENSOTSG00005046212)	cabp5a (ENSOTSG00005046207)	nif3l1 (ENSOTSG00005046206)	eif3c (ENSOTSG00005046192)	ENSOTSG00005046188	ENSOTSG00005046173	ALDOA (ENSOTSG00005046150)	ENSOTSG00005046148 ##22	ENSOTSG00005046145	ENSOTSG00005046141	ENSOTSG00005046140	ASF1B (ENSOTSG00005046139)	ENSOTSG00005046138	slc4a1b (ENSOTSG00005046057)	ENSOTSG00005046055	atxn7l3b (ENSOTSG00005046052)	SMARCD2 (ENSOTSG00005045885)	psmc5 (ENSOTSG00005045358)	MPP3 (ENSOTSG00005045211)	ENSOTSG00005045147	ENSOTSG00005045146	znf281b (ENSOTSG00005045145)	ENSOTSG00005045144
Huchen	MODERN SPECIES	666	ENSHHUG00000018206	ENSHHUG00000018226	lin7b (ENSHHUG00000018278) ##33	prmt1 (ENSHHUG00000018309)	AP2A1 (ENSHHUG00000018395)	ENSHHUG00000018515	rras (ENSHHUG00000018521)	prrg2 (ENSHHUG00000018527) ##17	PRR12 (ENSHHUG00000018541) ##16	ENSHHUG00000018598	ENSHHUG00000018686	trpm4a (ENSHHUG00000018702)	ENSHHUG00000018755	nosip (ENSHHUG00000018762)	rcn3 (ENSHHUG00000018780) ##21	pax10 (ENSHHUG00000018827) ##22
Spotted gar	MODERN SPECIES	674													trpm4a (ENSLOCG00000017174)	nosip (ENSLOCG00000017172)	rcn3 (ENSLOCG00000017170) ##21	pax10 (ENSLOCG00000017168) ##22	ENSLOCG00000017166	tspan4b (ENSLOCG00000017164)	ENSLOCG00000017162	ENSLOCG00000017154	ENSLOCG00000017145	ENSLOCG00000017144	ENSLOCG00000017142 ##16	ENSLOCG00000017141 ##16	ENSLOCG00000017140 ##16	ENSLOCG00000017139	ENSLOCG00000017137	ENSLOCG00000017135	ENSLOCG00000017348	ENSLOCG00000017134	ENSLOCG00000017132
Reedfish	MODERN SPECIES	2	ENSECRG00000008699	zgc:100829 (ENSECRG00000008708)	PSD2 (ENSECRG00000008723)	ENSECRG00000008735	nrg2b (ENSECRG00000008744)	ENSECRG00000008781	dedd (ENSECRG00000008793)	ENSECRG00000008806	ENSECRG00000008824	ENSECRG00000008836	ENSECRG00000008848	ENSECRG00000008859	ENSECRG00000008878	nosip (ENSECRG00000008906)	rcn3 (ENSECRG00000008930) ##21	pax10 (ENSECRG00000008974) ##22	ENSECRG00000009022	tspan4b (ENSECRG00000009036)	prmt1 (ENSECRG00000009071)	AP2A1 (ENSECRG00000009158)	ENSECRG00000009232	ENSECRG00000009269	SYT5 (ENSECRG00000009287)	dnaaf3 (ENSECRG00000009302)	tnnt1 (ENSECRG00000009322)	ENSECRG00000009335	pih1d1 (ENSECRG00000009346)	ENSECRG00000009368	ENSECRG00000009406	ENSECRG00000009422	NR1H2 (ENSECRG00000009444)
Cyclostomata	ANCESTRAL SPECIES	699																ENSGT00940000155391 #22	ENSGT00390000001443 #23
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	504											tefa (ENSEBUG00000003127)	ENSEBUG00000002467	TEAD1 (ENSEBUG00000015798)	ENSEBUG00000012001 ##21	ENSEBUG00000000492	PAX6 (ENSEBUG00000015684) #22	ENSEBUG00000009510 #25	lrp5 (ENSEBUG00000010078)	tbxas1 (ENSEBUG00000009344)	hipk2 (ENSEBUG00000002902)	ENSEBUG00000014956 #10	syt9b (ENSEBUG00000003394)
Hagfish	MODERN SPECIES	146													ENSEBUG00000009034	ENSEBUG00000008645	ENSEBUG00000006399 #12	ENSEBUG00000004233 #22	ENSEBUG00000015011 #23	ENSEBUG00000014394 ##21	eif3m (ENSEBUG00000000825) #19	ENSEBUG00000011663	ENSEBUG00000001144	dera (ENSEBUG00000010084)	tmem138 (ENSEBUG00000012759)	strap (ENSEBUG00000016082)	ENSEBUG00000012696	ENSEBUG00000010474	ENSEBUG00000010724