Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Glires	ANCESTRAL SPECIES	21	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Rodentia	ANCESTRAL SPECIES	17	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Eurasian red squirrel	MODERN SPECIES	7	PLVAP (ENSSVLG00005024254) #7	CCDC194 (ENSSVLG00005024294) #8	MVB12A (ENSSVLG00005024325) #9	TMEM221 (ENSSVLG00005024354) #10	NXNL1 (ENSSVLG00005024380) #11	SLC27A1 (ENSSVLG00005024395) #12	PGLS (ENSSVLG00005024422) #13	NIBAN3 (ENSSVLG00005024462) #14	COLGALT1 (ENSSVLG00005024596) #15	ENSSVLG00005024786 #16	MAP1S (ENSSVLG00005024937) #17	FCHO1 (ENSSVLG00005025009) #18	B3GNT3 (ENSSVLG00005025078) #19	INSL3 (ENSSVLG00005025086) #20	JAK3 (ENSSVLG00005025159) #21	RPL18A (ENSSVLG00005025287) #22	SLC5A5 (ENSSVLG00005025310) #23	CCDC124 (ENSSVLG00005025323) #24	KCNN1 (ENSSVLG00005025333) #25	ARRDC2 (ENSSVLG00005025348) #26	IL12RB1 (ENSSVLG00005025373) #27	MAST3 (ENSSVLG00005025404) #28	PIK3R2 (ENSSVLG00005025434) #29	IFI30 (ENSSVLG00005025456) #30	MPV17L2 (ENSSVLG00005025463) #31	RAB3A (ENSSVLG00005025472) #32	PDE4C (ENSSVLG00005025492) #33	ENSSVLG00005025525 #34	JUND (ENSSVLG00005025531) #35	LSM4 (ENSSVLG00005025539) #36	PGPEP1 (ENSSVLG00005025546) #37
Marmotini	ANCESTRAL SPECIES	12	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489.u #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489.u #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Arctic ground squirrel	MODERN SPECIES	73	CCDC194 (ENSUPAG00010019435) #8	ENSUPAG00010019429	MVB12A (ENSUPAG00010019420) #9	TMEM221 (ENSUPAG00010019415) #10	NXNL1 (ENSUPAG00010019406) #11	SLC27A1 (ENSUPAG00010019392) #12	PGLS (ENSUPAG00010019382) #13	NIBAN3 (ENSUPAG00010019359) #14	COLGALT1 (ENSUPAG00010019345) #15	UNC13A (ENSUPAG00010019255)	MAP1S (ENSUPAG00010019249) #17	FCHO1 (ENSUPAG00010019128) #18	B3GNT3 (ENSUPAG00010019116) #19	INSL3 (ENSUPAG00010019100) #20	JAK3 (ENSUPAG00010019085) #21	RPL18A (ENSUPAG00010019065) #22	SLC5A5 (ENSUPAG00010019029) #23	CCDC124 (ENSUPAG00010019014) #24	KCNN1 (ENSUPAG00010018962) #25	ARRDC2 (ENSUPAG00010018949) #26	IL12RB1 (ENSUPAG00010018927) #27	MAST3 (ENSUPAG00010018814) #28	PIK3R2 (ENSUPAG00010018802) #29	IFI30 (ENSUPAG00010018797) #30	MPV17L2 (ENSUPAG00010018792) #31	RAB3A (ENSUPAG00010018778) #32	PDE4C (ENSUPAG00010018713) #33	ENSUPAG00010018681 #34	JUND (ENSUPAG00010018676) #35	ENSUPAG00010018660 #36	PGPEP1 (ENSUPAG00010018652) #37
Squirrel	MODERN SPECIES	196	DDA1 (ENSSTOG00000006258)	ANO8 (ENSSTOG00000006264)	GTPBP3 (ENSSTOG00000006318)	PLVAP (ENSSTOG00000012250) #7	ENSSTOG00000034881 #8	MVB12A (ENSSTOG00000003448) #9	ENSSTOG00000034053 #10	SLC27A1 (ENSSTOG00000026400) #12	PGLS (ENSSTOG00000000461) #13	NIBAN3 (ENSSTOG00000012712) #14	ENSSTOG00000000329 #15	UNC13A (ENSSTOG00000026062)	MAP1S (ENSSTOG00000021851) #17	ENSSTOG00000027473 #18	JAK3 (ENSSTOG00000007752) #21	RPL18A (ENSSTOG00000007788) #22	SLC5A5 (ENSSTOG00000001884) #23	CCDC124 (ENSSTOG00000019634) #24	KCNN1 (ENSSTOG00000010735) #25	ARRDC2 (ENSSTOG00000002995) #26	MAST3 (ENSSTOG00000023373) #28	PIK3R2 (ENSSTOG00000001921) #29	IFI30 (ENSSTOG00000001939) #30	MPV17L2 (ENSSTOG00000023670) #31	RAB3A (ENSSTOG00000002981) #32	PDE4C (ENSSTOG00000000320) #33	ENSSTOG00000033779	IQCN (ENSSTOG00000025440) #34	LSM4 (ENSSTOG00000016494) #36	PGPEP1 (ENSSTOG00000003948) #37	GDF15 (ENSSTOG00000022430)
Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT00730000111147	ENSGT00390000002505	ENSGT00950000182915.b.b.b.b	ENSGT00940000155438.b	ENSGT00940000163163	ENSGT00940000157924	ENSGT00390000013811	ENSGT00940000160466	ENSGT00940000161678	ENSGT00940000157246	ENSGT01030000234542.b.b.a.a.a.b	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00390000015797.d ##22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Hystricomorpha_a	ANCESTRAL SPECIES	55												ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	66												ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37	ENSGT00940000161872
Degu	MODERN SPECIES	78	PABPC1L (ENSODEG00000015482)	ENSODEG00000015183	RIMS4 (ENSODEG00000015319)	KCNK15 (ENSODEG00000015091)	ADA (ENSODEG00000015048)	PKIG (ENSODEG00000016126)	ENSODEG00000020242	SERINC3 (ENSODEG00000015456)	TTPAL (ENSODEG00000014738)	HNF4A (ENSODEG00000015535)	R3HDML (ENSODEG00000015328)	FITM2 (ENSODEG00000014756)	GDAP1L1 (ENSODEG00000014582)	OSER1 (ENSODEG00000014978)	JPH2 (ENSODEG00000014658)	ENSODEG00000020224 #22	TOX2 (ENSODEG00000015129)	MYBL2 (ENSODEG00000014783)	ENSODEG00000014562	SGK2 (ENSODEG00000014377)	ENSODEG00000015466	L3MBTL1 (ENSODEG00000014727)	ENSODEG00000016510	PTPRT (ENSODEG00000015540)	ENSODEG00000015100	ENSODEG00000016376	ENSODEG00000015660	ENSODEG00000014457	ENSODEG00000015358	EMILIN3 (ENSODEG00000014427)	LPIN3 (ENSODEG00000014914)
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	166	UGGT1 (ENSCLAG00000004844)	SAP130 (ENSCLAG00000002622)	AMMECR1L (ENSCLAG00000004252)	POLR2D (ENSCLAG00000004449)	WDR33 (ENSCLAG00000005199)	LIMS2 (ENSCLAG00000005260)	GPR17 (ENSCLAG00000005855)	MYO7B (ENSCLAG00000006979)	IWS1 (ENSCLAG00000008232)	PROC (ENSCLAG00000002690)	MAP3K2 (ENSCLAG00000002850)	ERCC3 (ENSCLAG00000002965)	BIN1 (ENSCLAG00000003943)	ENSCLAG00000004213	ENSCLAG00000002170	ENSCLAG00000002210 #22	CNTNAP5 (ENSCLAG00000002809)	ENSCLAG00000004414	TSN (ENSCLAG00000006171)	NIFK (ENSCLAG00000006296)	CLASP1 (ENSCLAG00000003845)	TFCP2L1 (ENSCLAG00000003321)	GLI2 (ENSCLAG00000003886)	INHBB (ENSCLAG00000002594)	RALB (ENSCLAG00000002612)	ENSCLAG00000002685	EPB41L5 (ENSCLAG00000002942)	PTPN4 (ENSCLAG00000002781)	TMEM177 (ENSCLAG00000002898)	CFAP221 (ENSCLAG00000003127)	SCTR (ENSCLAG00000003965)
Long-tailed chinchilla	MODERN SPECIES	231										ENSCLAG00000008768	ENSCLAG00000010339	FCHO1 (ENSCLAG00000008754) #18	B3GNT3 (ENSCLAG00000007898) #19	ENSCLAG00000007832 #20	JAK3 (ENSCLAG00000012380) #21	RPL18A (ENSCLAG00000010952) #22	ENSCLAG00000007225 #23	CCDC124 (ENSCLAG00000007029) #24	KCNN1 (ENSCLAG00000006176) #25	ARRDC2 (ENSCLAG00000005752) #26	MAST3 (ENSCLAG00000012903) #28	PIK3R2 (ENSCLAG00000014107) #29	IFI30 (ENSCLAG00000016108) #30	MPV17L2 (ENSCLAG00000015953) #31	RAB3A (ENSCLAG00000015642) #32	PDE4C (ENSCLAG00000016330) #33	LSM4 (ENSCLAG00000010828) #36	PGPEP1 (ENSCLAG00000010542) #37	GDF15 (ENSCLAG00000010045)	ENSCLAG00000009618	SSBP4 (ENSCLAG00000013009)
Rodentia_B	ANCESTRAL SPECIES	37	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000154929.B #16	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Kangaroo rat	MODERN SPECIES	427			Abhd8 (ENSDORG00000012739)	Mrpl34 (ENSDORG00000025245)	Dda1 (ENSDORG00000012740)	Ano8 (ENSDORG00000012741)	ENSDORG00000012745 #7	Mvb12a (ENSDORG00000003275) #9	Nxnl1 (ENSDORG00000028217) #11	Slc27a1 (ENSDORG00000007675) #12	Pgls (ENSDORG00000007681) #13	ENSDORG00000026507 #15	Unc13a (ENSDORG00000015298)	Fcho1 (ENSDORG00000007853) #18	Jak3 (ENSDORG00000012761) #21	ENSDORG00000012479 #22	Slc5a5 (ENSDORG00000012480) #23	Ccdc124 (ENSDORG00000029588) #24	Kcnn1 (ENSDORG00000028845) #25	ENSDORG00000028690 #28	ENSDORG00000004244 #29	Mpv17l2 (ENSDORG00000009072) #31	Rab3a (ENSDORG00000009070) #32	Lsm4 (ENSDORG00000024225) #36	ENSDORG00000014394	Isyna1 (ENSDORG00000025359)	Fkbp8 (ENSDORG00000010135)	ENSDORG00000025514	Gm11808 (ENSDORG00000026093)	Tmem59l (ENSDORG00000024894)	Klhl26 (ENSDORG00000000436)
Myomorpha	ANCESTRAL SPECIES	43	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000154929.B #16	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.d ##22	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Muroidea	ANCESTRAL SPECIES	47	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000161827 #21	ENSGT00940000163613 #20	ENSGT00940000159134 #19	ENSGT00940000160489 #18	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1870	Gtpbp3 (ENSNGAG00000017920)	Ccdc194 (ENSNGAG00000012696) #8	Mvb12a (ENSNGAG00000023447) #9	Tmem221 (ENSNGAG00000020235) #10	ENSNGAG00000012171 #11	Slc27a1 (ENSNGAG00000024289) #12	Pgls (ENSNGAG00000019777) #13	Niban3 (ENSNGAG00000007663) #14	Colgalt1 (ENSNGAG00000019615) #15	Unc13a (ENSNGAG00000022176)	Jak3 (ENSNGAG00000018897) #21	Insl3 (ENSNGAG00000014732) #20	B3gnt3 (ENSNGAG00000002028) #19	Fcho1 (ENSNGAG00000013678) #18	Map1s (ENSNGAG00000003824) #17	Rpl18a (ENSNGAG00000024087) #22	Slc5a5 (ENSNGAG00000001506) #23	Ccdc124 (ENSNGAG00000015814) #24	Kcnn1 (ENSNGAG00000021945) #25	ENSNGAG00000021441 #26	Il12rb1 (ENSNGAG00000005757) #27	ENSNGAG00000014676 #28	ENSNGAG00000022605 #29	ENSNGAG00000019677 #29	Ifi30 (ENSNGAG00000022275) #30	Mpv17l2 (ENSNGAG00000012070) #31	Rab3a (ENSNGAG00000020872) #32	Pde4c (ENSNGAG00000004214) #33	ENSNGAG00000014618	Iqcn (ENSNGAG00000014525) #34	Jund (ENSNGAG00000010099) #35
Muroidea_A	ANCESTRAL SPECIES	28	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000161827 #21	ENSGT00940000163613 #20	ENSGT00940000159134 #19	ENSGT00940000160489 #18	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34
Murinae	ANCESTRAL SPECIES	23	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000161827 #21	ENSGT00940000163613 #20	ENSGT00940000159134 #19	ENSGT00940000160489 #18	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Mus	ANCESTRAL SPECIES	6	ENSGT00390000006166 #7	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029.j	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000162475	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000006166 #7	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029.j	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000162475	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Ryukyu mouse	MODERN SPECIES	17	Gtpbp3 (MGP_CAROLIEiJ_G0031188)	Ano8 (MGP_CAROLIEiJ_G0031187)	Dda1 (MGP_CAROLIEiJ_G0031186)	Mrpl34 (MGP_CAROLIEiJ_G0031185)	Abhd8 (MGP_CAROLIEiJ_G0031184)	Ankle1 (MGP_CAROLIEiJ_G0031183)	Babam1 (MGP_CAROLIEiJ_G0031182)	Ushbp1 (MGP_CAROLIEiJ_G0031181)	Nr2f6 (MGP_CAROLIEiJ_G0031180)	Ocel1 (MGP_CAROLIEiJ_G0031179)	Use1 (MGP_CAROLIEiJ_G0031178)	Myo9b (MGP_CAROLIEiJ_G0031177)	Haus8 (MGP_CAROLIEiJ_G0031176)	MGP_CAROLIEiJ_G0031175	Map1s (MGP_CAROLIEiJ_G0031174) #17	MGP_CAROLIEiJ_G0031173 #22	Slc5a5 (MGP_CAROLIEiJ_G0031172) #23	Ccdc124 (MGP_CAROLIEiJ_G0031171) #24	Kcnn1 (MGP_CAROLIEiJ_G0031170) #25	Arrdc2 (MGP_CAROLIEiJ_G0031169) #26	Il12rb1 (MGP_CAROLIEiJ_G0031168) #27	Mast3 (MGP_CAROLIEiJ_G0031167) #28	Pik3r2 (MGP_CAROLIEiJ_G0031166) #29	Ifi30 (MGP_CAROLIEiJ_G0031165) #30	Mpv17l2 (MGP_CAROLIEiJ_G0031164) #31	Rab3a (MGP_CAROLIEiJ_G0031163) #32	Pde4c (MGP_CAROLIEiJ_G0031162) #33	Gm3336 (MGP_CAROLIEiJ_G0031161)	MGP_CAROLIEiJ_G0031160	Jund (MGP_CAROLIEiJ_G0031159) #35	Lsm4 (MGP_CAROLIEiJ_G0031158) #36
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000006166 #7	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029.j	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000162475	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00390000015797.d ##22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000006166 #7	ENSGT00390000016851	ENSGT00940000157019	ENSGT00390000007029.j	ENSGT00390000012240	ENSGT00390000007336	ENSGT00510000049316	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748	ENSGT00940000162475	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00680000100785
spretus	MODERN SPECIES	17	Gtpbp3 (MGP_SPRETEiJ_G0032307)	Ano8 (MGP_SPRETEiJ_G0032306)	Dda1 (MGP_SPRETEiJ_G0032305)	Mrpl34 (MGP_SPRETEiJ_G0032304)	Abhd8 (MGP_SPRETEiJ_G0032303)	Ankle1 (MGP_SPRETEiJ_G0032302)	Babam1 (MGP_SPRETEiJ_G0032301)	Ushbp1 (MGP_SPRETEiJ_G0032300)	Nr2f6 (MGP_SPRETEiJ_G0032299)	Ocel1 (MGP_SPRETEiJ_G0032298)	Use1 (MGP_SPRETEiJ_G0032297)	Myo9b (MGP_SPRETEiJ_G0032296)	Haus8 (MGP_SPRETEiJ_G0032295)	MGP_SPRETEiJ_G0032294	Map1s (MGP_SPRETEiJ_G0032293) #17	MGP_SPRETEiJ_G0032292 #22	Slc5a5 (MGP_SPRETEiJ_G0032291) #23	Ccdc124 (MGP_SPRETEiJ_G0032290) #24	MGP_SPRETEiJ_G0032289	Kcnn1 (MGP_SPRETEiJ_G0032288) #25	Arrdc2 (MGP_SPRETEiJ_G0032287) #26	Il12rb1 (MGP_SPRETEiJ_G0032286) #27	Mast3 (MGP_SPRETEiJ_G0032285) #28	Pik3r2 (MGP_SPRETEiJ_G0032284) #29	Ifi30 (MGP_SPRETEiJ_G0032283) #30	Mpv17l2 (MGP_SPRETEiJ_G0032282) #31	Rab3a (MGP_SPRETEiJ_G0032281) #32	Pde4c (MGP_SPRETEiJ_G0032280) #33	Gm3336 (MGP_SPRETEiJ_G0032279)	MGP_SPRETEiJ_G0032278	Jund (MGP_SPRETEiJ_G0032277) #35
Shrew mouse	MODERN SPECIES	10	Plvap (MGP_PahariEiJ_G0021654) #7	Gtpbp3 (MGP_PahariEiJ_G0021653)	Ano8 (MGP_PahariEiJ_G0021652)	Dda1 (MGP_PahariEiJ_G0021651)	Mrpl34 (MGP_PahariEiJ_G0021650)	Abhd8 (MGP_PahariEiJ_G0021649)	Ankle1 (MGP_PahariEiJ_G0021648)	Babam1 (MGP_PahariEiJ_G0021647)	Ushbp1 (MGP_PahariEiJ_G0021646)	Nr2f6 (MGP_PahariEiJ_G0021645)	Ocel1 (MGP_PahariEiJ_G0021644)	Use1 (MGP_PahariEiJ_G0021643)	Myo9b (MGP_PahariEiJ_G0021642)	MGP_PahariEiJ_G0021641	Map1s (MGP_PahariEiJ_G0021640) #17	MGP_PahariEiJ_G0021639 #22	Slc5a5 (MGP_PahariEiJ_G0021638) #23	Ccdc124 (MGP_PahariEiJ_G0021637) #24	MGP_PahariEiJ_G0021636	Kcnn1 (MGP_PahariEiJ_G0021635) #25	Arrdc2 (MGP_PahariEiJ_G0021634) #26	Il12rb1 (MGP_PahariEiJ_G0021633) #27	Mast3 (MGP_PahariEiJ_G0021632) #28	Pik3r2 (MGP_PahariEiJ_G0021631) #29	Ifi30 (MGP_PahariEiJ_G0021630) #30	Mpv17l2 (MGP_PahariEiJ_G0021629) #31	Rab3a (MGP_PahariEiJ_G0021628) #32	Pde4c (MGP_PahariEiJ_G0021627) #33	MGP_PahariEiJ_G0021626	MGP_PahariEiJ_G0021625	Jund (MGP_PahariEiJ_G0021624) #35
Cricetidae	ANCESTRAL SPECIES	30	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000161827 #21	ENSGT00940000163613 #20	ENSGT00940000159134 #19	ENSGT00940000160489 #18	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34
Cricetinae	ANCESTRAL SPECIES	36	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000161827 #21	ENSGT00940000163613 #20	ENSGT00940000159134 #19	ENSGT00940000160489 #18	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Golden Hamster	MODERN SPECIES	790									Tmem114 (ENSMAUG00000004886)	Mettl22 (ENSMAUG00000005394)	Abat (ENSMAUG00000006912)	Pmm2 (ENSMAUG00000008157)	Carhsp1 (ENSMAUG00000008339)	Litafd (ENSMAUG00000008595)	ENSMAUG00000008233	ENSMAUG00000008889 #22	Hapstr1 (ENSMAUG00000009053)	Grin2a (ENSMAUG00000009472)	Rpl39l (ENSMAUG00000015776)	Atf7ip2 (ENSMAUG00000010757)	Emp2 (ENSMAUG00000011940)	Tekt5 (ENSMAUG00000009817)	Nubp1 (ENSMAUG00000012383)	Tvp23a (ENSMAUG00000013344)	Ciita (ENSMAUG00000011847)	Dexi (ENSMAUG00000013713)	Clec16a (ENSMAUG00000015162)	Socs1 (ENSMAUG00000015623)	Tnp2 (ENSMAUG00000017042)	Prm3 (ENSMAUG00000015919)	Prm2 (ENSMAUG00000018158)
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Col2a1 (ENSCGRG00001000766)	Tmem106c (ENSCGRG00001001872)	Vdr (ENSCGRG00001003356)	Hdac7 (ENSCGRG00001023917)	Slc48a1 (ENSCGRG00001012997)	Rapgef3 (ENSCGRG00001008173)	Endou (ENSCGRG00001001419)	Rpap3 (ENSCGRG00001010868)	Pced1b (ENSCGRG00001009722)	Amigo2 (ENSCGRG00001009389)	ENSCGRG00001000597	Slc38a2 (ENSCGRG00001001349)	Slc38a1 (ENSCGRG00001013047)	Scaf11 (ENSCGRG00001000868)	Arid2 (ENSCGRG00001004106)	ENSCGRG00001023780 #22	Ano6 (ENSCGRG00001003724)	ENSCGRG00001001693	Dbx2 (ENSCGRG00001002554)	Nell2 (ENSCGRG00001001600)	Tmem117 (ENSCGRG00001004267)	Twf1 (ENSCGRG00001002511)	Irak4 (ENSCGRG00001008384)	Pus7l (ENSCGRG00001003122)	Adamts20 (ENSCGRG00001009652)	ENSCGRG00001010157	Prickle1 (ENSCGRG00001022837)	ENSCGRG00001022248	Zcrb1 (ENSCGRG00001023392)	ENSCGRG00001023638	ENSCGRG00001023773
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	184	ENSCGRG00001020018	ENSCGRG00001004203	Efhb (ENSCGRG00001007930)	ENSCGRG00001001002	Kcnh8 (ENSCGRG00001023448)	Satb1 (ENSCGRG00001012162)	Tbc1d5 (ENSCGRG00001012430)	Plcl2 (ENSCGRG00001019852)	Dazl (ENSCGRG00001021961)	Rftn1 (ENSCGRG00001005272)	ENSCGRG00001015490	Kif6 (ENSCGRG00001021327)	Daam2 (ENSCGRG00001016238)	Mocs1 (ENSCGRG00001021044)	Lrfn2 (ENSCGRG00001023899)	ENSCGRG00001016038 #22	Unc5cl (ENSCGRG00001020057)	Tspo2 (ENSCGRG00001011008)	Apobec2 (ENSCGRG00001014983)	Oard1 (ENSCGRG00001019722)	Nfya (ENSCGRG00001008539)	Treml1 (ENSCGRG00001003109)	Trem2 (ENSCGRG00001004763)	ENSCGRG00001010441	Treml2 (ENSCGRG00001017130)	Treml4 (ENSCGRG00001019063)	Trem1 (ENSCGRG00001010134)	ENSCGRG00001011186	1700067P10Rik (ENSCGRG00001013027)	1700122O11Rik (ENSCGRG00001018249)	ENSCGRG00001007941
Chinese hamster chok1gshd	MODERN SPECIES	144	Atp2b2 (ENSCGRG00001021784)	Sec13 (ENSCGRG00001019327)	Ghrl (ENSCGRG00001018358)	ENSCGRG00001017251	Irak2 (ENSCGRG00001011625)	Vhl (ENSCGRG00001007732)	Brk1 (ENSCGRG00001000410)	Fancd2os (ENSCGRG00001001402)	Fancd2 (ENSCGRG00001010709)	Emc3 (ENSCGRG00001022867)	Prrt3 (ENSCGRG00001018862)	Creld1 (ENSCGRG00001018363)	Il17rc (ENSCGRG00001020571)	Il17re (ENSCGRG00001013354)	ENSCGRG00001012137	ENSCGRG00001016149 #22	Cidec (ENSCGRG00001011026)	Rpusd3 (ENSCGRG00001004923)	Ttll3 (ENSCGRG00001000293)	Arpc4 (ENSCGRG00001021554)	ENSCGRG00001016793	Camk1 (ENSCGRG00001015471)	Ogg1 (ENSCGRG00001015167)	Brpf1 (ENSCGRG00001013167)	Cpne9 (ENSCGRG00001004481)	Mtmr14 (ENSCGRG00001016521)	Lhfpl4 (ENSCGRG00001014765)	Setd5 (ENSCGRG00001006430)	Thumpd3 (ENSCGRG00001024117)	Srgap3 (ENSCGRG00001010935)	ENSCGRG00001021718
Chinese hamster chok1gshd	MODERN SPECIES	111	Snapc3 (ENSCGRG00001021052)	Psip1 (ENSCGRG00001018077)	Ccdc171 (ENSCGRG00001012100)	Bnc2 (ENSCGRG00001021192)	ENSCGRG00001006130	Cntln (ENSCGRG00001005303)	Sh3gl2 (ENSCGRG00001022450)	Adamtsl1 (ENSCGRG00001004761)	Saxo1 (ENSCGRG00001017278)	Plin2 (ENSCGRG00001016267)	Dennd4c (ENSCGRG00001004609)	ENSCGRG00001022609	ENSCGRG00001022215	Acer2 (ENSCGRG00001023025)	Slc24a2 (ENSCGRG00001020424)	ENSCGRG00001002729 #22	ENSCGRG00001017031	Mllt3 (ENSCGRG00001021349)	Focad (ENSCGRG00001019342)	Hacd4 (ENSCGRG00001014653)	Ifnb1 (ENSCGRG00001002042)	ENSCGRG00001001577	ENSCGRG00001003697	ENSCGRG00001002928	ENSCGRG00001003121	ENSCGRG00001002533	ENSCGRG00001019024	ENSCGRG00001015592	ENSCGRG00001007554	ENSCGRG00001006905	ENSCGRG00001006765
Chinese hamster chok1gshd	MODERN SPECIES	184	Ccdc194 (ENSCGRG00001013325) #8	Bst2 (ENSCGRG00001013835)	Mvb12a (ENSCGRG00001014747) #9	Tmem221 (ENSCGRG00001015191) #10	Nxnl1 (ENSCGRG00001015557) #11	Slc27a1 (ENSCGRG00001023402) #12	Pgls (ENSCGRG00001024276) #13	Niban3 (ENSCGRG00001000261) #14	Colgalt1 (ENSCGRG00001017778) #15	Unc13a (ENSCGRG00001021038)	Jak3 (ENSCGRG00001021943) #21	Insl3 (ENSCGRG00001007450) #20	B3gnt3 (ENSCGRG00001011046) #19	Fcho1 (ENSCGRG00001016391) #18	Map1s (ENSCGRG00001007033) #17	ENSCGRG00001009476 #22	Slc5a5 (ENSCGRG00001018002) #23	Ccdc124 (ENSCGRG00001018768) #24	Kcnn1 (ENSCGRG00001014502) #25	Arrdc2 (ENSCGRG00001016751) #26	Il12rb1 (ENSCGRG00001020218) #27	Mast3 (ENSCGRG00001005931) #28	Pik3r2 (ENSCGRG00001017940) #29	Ifi30 (ENSCGRG00001020539) #30	Mpv17l2 (ENSCGRG00001017497) #31	Rab3a (ENSCGRG00001021376) #32	Pde4c (ENSCGRG00001018842) #33	Gm3336 (ENSCGRG00001023238)	Iqcn (ENSCGRG00001004411) #34	Jund (ENSCGRG00001010573) #35	Lsm4 (ENSCGRG00001014436) #36
Chinese hamster chok1gshd	MODERN SPECIES	303	Ppp1r18 (ENSCGRG00001003993)	Dhx16 (ENSCGRG00001008329)	2310061I04Rik (ENSCGRG00001011201)	ATAT1 (ENSCGRG00001013997)	Mrps18b (ENSCGRG00001018086)	Ppp1r10 (ENSCGRG00001020281)	Abcf1 (ENSCGRG00001018274)	Prr3 (ENSCGRG00001000806)	Gnl1 (ENSCGRG00001004986)	ENSCGRG00001011540	ENSCGRG00001012121	ENSCGRG00001018149	ENSCGRG00001013282	ENSCGRG00001018024	ENSCGRG00001020054	ENSCGRG00001001839 #22	ENSCGRG00001000045	ENSCGRG00001000484	Ring1 (ENSCGRG00001001992)	Hsd17b8 (ENSCGRG00001003834)	Slc39a7 (ENSCGRG00001022298)	Rxrb (ENSCGRG00001000192)	Col11a2 (ENSCGRG00001016209)	ENSCGRG00001007476	ENSCGRG00001009189	H2-Oa (ENSCGRG00001013616)	Brd2 (ENSCGRG00001018148)	H2-DMa (ENSCGRG00001000682)	ENSCGRG00001001555	Psmb9 (ENSCGRG00001007415)	Tap1 (ENSCGRG00001009114)
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000161827 #21	ENSGT00940000163613 #20	ENSGT00940000159134 #19	ENSGT00940000160489 #18	ENSGT00940000160221 #17	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00900000143617	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34
Northern American deer mouse	MODERN SPECIES	8	Ccdc194 (ENSPEMG00000010170) #8	Bst2 (ENSPEMG00000011254)	Mvb12a (ENSPEMG00000011177) #9	Tmem221 (ENSPEMG00000010509) #10	Nxnl1 (ENSPEMG00000008351) #11	Pgls (ENSPEMG00000013774) #13	Niban3 (ENSPEMG00000009042) #14	Colgalt1 (ENSPEMG00000010115) #15	ENSPEMG00000027274	Unc13a (ENSPEMG00000012160)	Jak3 (ENSPEMG00000010889) #21	ENSPEMG00000014585	B3gnt3 (ENSPEMG00000013579) #19	Fcho1 (ENSPEMG00000014923) #18	Map1s (ENSPEMG00000029387) #17	ENSPEMG00000014060 #22	Slc5a5 (ENSPEMG00000009527) #23	Ccdc124 (ENSPEMG00000018475) #24	ENSPEMG00000025541	Kcnn1 (ENSPEMG00000011392) #25	ENSPEMG00000005917 #26	Il12rb1 (ENSPEMG00000004871) #27	ENSPEMG00000018323 #28	ENSPEMG00000029300	Pik3r2 (ENSPEMG00000013483) #29	Ifi30 (ENSPEMG00000016976) #30	Rab3a (ENSPEMG00000021028) #32	ENSPEMG00000008172 #33	ENSPEMG00000010765	ENSPEMG00000025156 #34	Jund (ENSPEMG00000005556) #35
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	7	Fam162a (ENSMOCG00000000950)	Abi3bp (ENSMOCG00000017744)	Impg2 (ENSMOCG00000012977)	ENSMOCG00000001541	Senp7 (ENSMOCG00000014396)	Trmt10c (ENSMOCG00000020572)	ENSMOCG00000019825	Zbtb11 (ENSMOCG00000020592)	Rpl24 (ENSMOCG00000018924)	Cep97 (ENSMOCG00000006949)	Nxpe3 (ENSMOCG00000021355)	Nfkbiz (ENSMOCG00000001612)	Zpld1 (ENSMOCG00000021963)	ENSMOCG00000008717	ENSMOCG00000022599	ENSMOCG00000008918 #22	Alcam (ENSMOCG00000002858)	Cblb (ENSMOCG00000020762)	ENSMOCG00000011608	ENSMOCG00000009635	Bbx (ENSMOCG00000020041)	Cd47 (ENSMOCG00000020195)	Ift57 (ENSMOCG00000010591)	Myh15 (ENSMOCG00000006530)	Cip2a (ENSMOCG00000002988)	Dzip3 (ENSMOCG00000018620)	ENSMOCG00000016936	Trat1 (ENSMOCG00000012939)	Morc1 (ENSMOCG00000021646)	Gm5485 (ENSMOCG00000015659)	Dppa2 (ENSMOCG00000015361)
Prairie vole	MODERN SPECIES	16	Jak2 (ENSMOCG00000013580)	Insl6 (ENSMOCG00000015208)	Rln1 (ENSMOCG00000012108)	Plgrkt (ENSMOCG00000013870)	Cd274 (ENSMOCG00000016738)	Pdcd1lg2 (ENSMOCG00000002927)	Ric1 (ENSMOCG00000018339)	ENSMOCG00000019292	Mlana (ENSMOCG00000005161)	9930021J03Rik (ENSMOCG00000020946)	Ranbp6 (ENSMOCG00000010374)	Il33 (ENSMOCG00000012740)	Uhrf2 (ENSMOCG00000000695)	Gldc (ENSMOCG00000010831)	Mbl2 (ENSMOCG00000022089)	ENSMOCG00000000632 #22	Dkk1 (ENSMOCG00000003507)	Prkg1 (ENSMOCG00000008936)	Cstf2t (ENSMOCG00000020428)	A1cf (ENSMOCG00000021536)	Asah2 (ENSMOCG00000003980)	Sgms1 (ENSMOCG00000021620)	Minpp1 (ENSMOCG00000003112)	ENSMOCG00000001064	Papss2 (ENSMOCG00000001274)	Atad1 (ENSMOCG00000013771)	ENSMOCG00000002138	ENSMOCG00000002723	Rnls (ENSMOCG00000004956)	Lipf (ENSMOCG00000013237)	Lipk (ENSMOCG00000015423)
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Rabbit	MODERN SPECIES	435	STARD13 (ENSOCUG00000011808)	RFC3 (ENSOCUG00000003624)	ENSOCUG00000021047	ENSOCUG00000032178	NBEA (ENSOCUG00000017834)	MAB21L1 (ENSOCUG00000017845)	DCLK1 (ENSOCUG00000017848)	ENSOCUG00000039614	SOHLH2 (ENSOCUG00000017853)	CCDC169 (ENSOCUG00000026427)	SPART (ENSOCUG00000017748)	ENSOCUG00000025281	ENSOCUG00000022169	CCNA1 (ENSOCUG00000015876)	SERTM1 (ENSOCUG00000012125)	RPL18A (ENSOCUG00000024833) #22	ENSOCUG00000038429	ENSOCUG00000000059	RFXAP (ENSOCUG00000014234)	SMAD9 (ENSOCUG00000007453)	ALG5 (ENSOCUG00000007458)	EXOSC8 (ENSOCUG00000007465)	SUPT20H (ENSOCUG00000008436)
Primates	ANCESTRAL SPECIES	18	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Tarsier	MODERN SPECIES	4137												DCTN6 (ENSTSYG00000013306)	MBOAT4 (ENSTSYG00000006418)	LEPROTL1 (ENSTSYG00000026663)	SARAF (ENSTSYG00000003935)	ENSTSYG00000028226 #22
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Hominoidea	DUPLICATION
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00950000183138.a.a.a	ENSGT00950000183099.u.a.d.b.c.a	ENSGT00550000075117.g	ENSGT00910000146711	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a #22	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503
Hominidae	ANCESTRAL SPECIES	2	ENSGT00950000183138.a.a.a	ENSGT00950000183099.u.a.d.b.c.a.a	ENSGT00550000075117.g	ENSGT00910000146711	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a #22	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00950000183099.u.a.d.b.c.a.a	ENSGT00550000075117.g	ENSGT00910000146711	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00950000183000.c.a.b.r.a.a	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a #22	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00950000183138.a.a.b	ENSGT00910000147527	ENSGT00950000183138.a.a.a	ENSGT00950000183099.u.a.d.b.c.a.a	ENSGT00550000075117.g	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a #22	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503
Pan	ANCESTRAL SPECIES	2	ENSGT00950000183138.a.a.b	ENSGT00910000147527	ENSGT00950000183138.a.a.a	ENSGT00950000183099.u.a.d.b.c.a.a	ENSGT00550000075117.g	ENSGT00910000146711	ENSGT01020000230359.A	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a #22	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503
Chimpanzee	MODERN SPECIES	16	EIF1B (ENSPTRG00000014776)	MYRIP (ENSPTRG00000014775)	ENSPTRG00000048405	MOBP (ENSPTRG00000034021)	ENSPTRG00000022841	SLC25A38 (ENSPTRG00000014772)	CX3CR1 (ENSPTRG00000014771)	XIRP1 (ENSPTRG00000014770)	CSRNP1 (ENSPTRG00000014768)	TTC21A (ENSPTRG00000014767)	GORASP1 (ENSPTRG00000014766)	WDR48 (ENSPTRG00000014765)	SCN11A (ENSPTRG00000014764)	SCN10A (ENSPTRG00000014763)	SCN5A (ENSPTRG00000014762)	ENSPTRG00000048292 #22	EXOG (ENSPTRG00000014761)	ACVR2B (ENSPTRG00000014760)	XYLB (ENSPTRG00000014758)	SLC22A14 (ENSPTRG00000014757)	SLC22A13 (ENSPTRG00000014756)	OXSR1 (ENSPTRG00000014755)	ENSPTRG00000050479	MYD88 (ENSPTRG00000014754)	ACAA1 (ENSPTRG00000014753)	DLEC1 (ENSPTRG00000014752)	PLCD1 (ENSPTRG00000014751)	VILL (ENSPTRG00000014750)	CTDSPL (ENSPTRG00000014749)	ENSPTRG00000045219	ITGA9 (ENSPTRG00000014748)
Bonobo	MODERN SPECIES	16	MYRIP (ENSPPAG00000043257)	ENSPPAG00000040906	MOBP (ENSPPAG00000029626)	ENSPPAG00000040786	SLC25A38 (ENSPPAG00000030662)	ENSPPAG00000030080	CX3CR1 (ENSPPAG00000033528)	ENSPPAG00000030043	CSRNP1 (ENSPPAG00000040920)	TTC21A (ENSPPAG00000038751)	GORASP1 (ENSPPAG00000037140)	WDR48 (ENSPPAG00000029758)	SCN11A (ENSPPAG00000029217)	SCN10A (ENSPPAG00000042803)	SCN5A (ENSPPAG00000036665)	ENSPPAG00000022727 #22	EXOG (ENSPPAG00000032881)	ACVR2B (ENSPPAG00000043096)	XYLB (ENSPPAG00000024504)	SLC22A14 (ENSPPAG00000039391)	OXSR1 (ENSPPAG00000028571)	MYD88 (ENSPPAG00000037521)	ENSPPAG00000041044	ENSPPAG00000040424	ENSPPAG00000043368	DLEC1 (ENSPPAG00000041933)	PLCD1 (ENSPPAG00000026688)	VILL (ENSPPAG00000041495)	CTDSPL (ENSPPAG00000004964)	ENSPPAG00000037199	ITGA9 (ENSPPAG00000027284)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00390000017996.a	ENSGT00940000161490	ENSGT00390000009361	ENSGT00940000154994.a	ENSGT00940000157491	ENSGT00390000003245.i.b	ENSGT00940000153375.lb.qb	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000156949	ENSGT00390000007209	ENSGT00390000004923.A	ENSGT00940000158110	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00390000015797.c.b.a.b #22	ENSGT00940000154576.k.a	ENSGT00950000182995.e.a.a.b	ENSGT00940000158433	ENSGT00940000156275	ENSGT00950000182858.C	ENSGT00940000160840	ENSGT00940000161580	ENSGT00940000159768	ENSGT00940000162735	ENSGT00390000017672	ENSGT01030000234513.A.a.a.a.b.b	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.a	ENSGT01090000260070.B	ENSGT00390000009435
Hominidae	ANCESTRAL SPECIES	3	ENSGT00390000017996.a	ENSGT00940000161490	ENSGT00390000009361	ENSGT00940000154994.a	ENSGT00940000157491	ENSGT00390000003245.i.b	ENSGT00940000153375.lb.qb	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000156949	ENSGT00390000007209	ENSGT00390000004923.A	ENSGT00940000158110	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00390000015797.c.b.a.b #22	ENSGT00940000154576.k.a	ENSGT00950000182995.e.a.a.b	ENSGT00940000158433	ENSGT00940000156275	ENSGT00950000182858.C	ENSGT00940000160840	ENSGT00940000161580	ENSGT00940000159768	ENSGT00940000162735	ENSGT00390000017672	ENSGT01030000234513.A.a.a.a.b.b	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.a	ENSGT01090000260070.B	ENSGT00390000009435
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00390000017996.a	ENSGT00940000161490	ENSGT00390000009361	ENSGT00940000154994.a	ENSGT00940000157491	ENSGT00390000003245.i.b.c.a	ENSGT00940000153375.lb.qb	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000156949	ENSGT00390000007209	ENSGT00390000004923.A	ENSGT00940000158110	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00390000015797.c.b.a.b #22	ENSGT00940000154576.k.a	ENSGT00950000182995.e.a.a.b	ENSGT00940000158433	ENSGT00940000156275	ENSGT00950000182858.C	ENSGT00940000160840	ENSGT00940000161580	ENSGT00940000159768	ENSGT00940000162735	ENSGT00390000017672	ENSGT01030000234513.A.a.a.a.b.b	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.a	ENSGT01090000260070.B	ENSGT00390000009435
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00390000017996.a	ENSGT00940000161490	ENSGT00390000009361	ENSGT00940000154994.a	ENSGT00940000157491	ENSGT00390000003245.i.b.c.a	ENSGT00940000153375.lb.qb	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000156949	ENSGT00390000007209	ENSGT00390000004923.A	ENSGT00940000158110	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00390000015797.c.b.a.b #22	ENSGT00940000154576.k.a	ENSGT00950000182995.e.a.a.b	ENSGT00940000158433	ENSGT00940000156275	ENSGT00950000182858.C	ENSGT00940000160840	ENSGT00940000161580	ENSGT00940000159768	ENSGT00940000162735	ENSGT00390000017672	ENSGT01030000234513.A.a.a.a.b.b	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.a	ENSGT01090000260070.B	ENSGT00390000009435
Pan	ANCESTRAL SPECIES		ENSGT00390000017996.a	ENSGT00940000161490	ENSGT00390000009361	ENSGT00940000154994.a	ENSGT00940000157491	ENSGT00390000003245.i.b.c.a	ENSGT00940000153375.lb.qb	ENSGT00390000018108	ENSGT00950000182963.a.b	ENSGT00940000156949	ENSGT00390000007209	ENSGT00390000004923.A	ENSGT00940000158110	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00390000015797.c.b.a.b #22	ENSGT00940000154576.k.a	ENSGT00950000182995.e.a.a.b	ENSGT00940000158433	ENSGT00940000156275	ENSGT00950000182858.C	ENSGT00940000160840	ENSGT00940000161580	ENSGT00940000159768	ENSGT00390000017672	ENSGT01030000234513.A.a.a.a.b.b	ENSGT01030000234513.A.a.a.a.b.a	ENSGT00390000002480	ENSGT00390000009435	ENSGT00940000159513	ENSGT00650000093733
Chimpanzee	MODERN SPECIES		FAM229A (ENSPTRG00000049104)	TSSK3 (ENSPTRG00000000483)	BSDC1 (ENSPTRG00000000484)	ZBTB8B (ENSPTRG00000000485)	ZBTB8A (ENSPTRG00000034505)	ZBTB8OS (ENSPTRG00000044760)	RBBP4 (ENSPTRG00000050153)	SYNC (ENSPTRG00000000489)	KIAA1522 (ENSPTRG00000000490)	YARS1 (ENSPTRG00000000491)	S100PBP (ENSPTRG00000000492)	FNDC5 (ENSPTRG00000000493)	HPCA (ENSPTRG00000000494)	TMEM54 (ENSPTRG00000000495)	RNF19B (ENSPTRG00000000496)	ENSPTRG00000047651 #22	AK2 (ENSPTRG00000000499)	AZIN2 (ENSPTRG00000000501)	TRIM62 (ENSPTRG00000000502)	ZNF362 (ENSPTRG00000000503)	A3GALT2 (ENSPTRG00000051813)	PHC2 (ENSPTRG00000000505)	ZSCAN20 (ENSPTRG00000000506)	CSMD2 (ENSPTRG00000000507)	C1H1orf94 (ENSPTRG00000000512)	GJB5 (ENSPTRG00000023267)	GJB4 (ENSPTRG00000022950)	ENSPTRG00000000513	SMIM12 (ENSPTRG00000052685)	DLGAP3 (ENSPTRG00000000514)	ENSPTRG00000050496
Gibbon	MODERN SPECIES	2	FAM229A (ENSNLEG00000002630)	TSSK3 (ENSNLEG00000002640)	BSDC1 (ENSNLEG00000002642)	ZBTB8A (ENSNLEG00000002769)	ZBTB8OS (ENSNLEG00000033285)	ENSNLEG00000002805	SYNC (ENSNLEG00000002901)	KIAA1522 (ENSNLEG00000002918)	YARS1 (ENSNLEG00000002922)	S100PBP (ENSNLEG00000003023)	FNDC5 (ENSNLEG00000003033)	HPCA (ENSNLEG00000003047)	TMEM54 (ENSNLEG00000003054)	ENSNLEG00000003081	ENSNLEG00000029000	ENSNLEG00000028216 #22	AK2 (ENSNLEG00000003152)	ENSNLEG00000003217	TRIM62 (ENSNLEG00000003249)	ZNF362 (ENSNLEG00000003263)	A3GALT2 (ENSNLEG00000035336)	PHC2 (ENSNLEG00000003267)	ZSCAN20 (ENSNLEG00000003289)	CSMD2 (ENSNLEG00000003311)	HMGB4 (ENSNLEG00000018198)	C1orf94 (ENSNLEG00000003476)	GJB5 (ENSNLEG00000003498)	GJB4 (ENSNLEG00000018199)	ENSNLEG00000018200	SMIM12 (ENSNLEG00000018201)	DLGAP3 (ENSNLEG00000003515)
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES		ENSNLEG00000032695 #8	ENSNLEG00000005767	MVB12A (ENSNLEG00000005771) #9	ENSNLEG00000005784 #10	NXNL1 (ENSNLEG00000005785) #11	SLC27A1 (ENSNLEG00000005786) #12	PGLS (ENSNLEG00000005794) #13	NIBAN3 (ENSNLEG00000005804) #14	COLGALT1 (ENSNLEG00000005821) #15	UNC13A (ENSNLEG00000005828)	MAP1S (ENSNLEG00000005844) #17	ENSNLEG00000005847 #18	B3GNT3 (ENSNLEG00000005866) #19	ENSNLEG00000030836	JAK3 (ENSNLEG00000005873) #21	ENSNLEG00000005889 #22	SLC5A5 (ENSNLEG00000005904) #23	CCDC124 (ENSNLEG00000005911) #24	KCNN1 (ENSNLEG00000005913) #25	ARRDC2 (ENSNLEG00000005917) #26	ENSNLEG00000027772	ENSNLEG00000005925 #27	MAST3 (ENSNLEG00000031094) #28	ENSNLEG00000005931 #29	ENSNLEG00000005937 #30	RAB3A (ENSNLEG00000005947) #32	ENSNLEG00000005948 #33	IQCN (ENSNLEG00000005979) #34	ENSNLEG00000027702	PGPEP1 (ENSNLEG00000006017) #37	GDF15 (ENSNLEG00000028565)
Gibbon	MODERN SPECIES	13	CHMP2B (ENSNLEG00000027188)	POU1F1 (ENSNLEG00000011761)	ENSNLEG00000033668	HTR1F (ENSNLEG00000018632)	ZNF654 (ENSNLEG00000011749)	C3orf38 (ENSNLEG00000011744)	ENSNLEG00000034037	EPHA3 (ENSNLEG00000011707)	PROS1 (ENSNLEG00000001695)	STX19 (ENSNLEG00000001932)	ARL13B (ENSNLEG00000001772)	ENSNLEG00000031524	NSUN3 (ENSNLEG00000028997)	ENSNLEG00000031526	ENSNLEG00000031075	ENSNLEG00000033949 #22	ENSNLEG00000030210	EPHA6 (ENSNLEG00000001969)	ARL6 (ENSNLEG00000027577)	CRYBG3 (ENSNLEG00000002034)	RIOX2 (ENSNLEG00000002054)	GABRR3 (ENSNLEG00000002140)	ENSNLEG00000035793	ENSNLEG00000018430	OR5H2 (ENSNLEG00000018431)	ENSNLEG00000018429	OR5K4 (ENSNLEG00000002165)	OR5K1 (ENSNLEG00000018433)	CLDND1 (ENSNLEG00000002167)	GPR15 (ENSNLEG00000018436)	CPOX (ENSNLEG00000031110)
Hominidae	ANCESTRAL SPECIES		ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Orangutan	MODERN SPECIES	10	CCDC194 (ENSPPYG00000035415) #8	BST2 (ENSPPYG00000029692)	MVB12A (ENSPPYG00000009713) #9	TMEM221 (ENSPPYG00000009714) #10	NXNL1 (ENSPPYG00000009715) #11	SLC27A1 (ENSPPYG00000009716) #12	PGLS (ENSPPYG00000009717) #13	NIBAN3 (ENSPPYG00000009718) #14	COLGALT1 (ENSPPYG00000009719) #15	UNC13A (ENSPPYG00000009720)	MAP1S (ENSPPYG00000009721) #17	FCHO1 (ENSPPYG00000009722) #18	B3GNT3 (ENSPPYG00000009723) #19	INSL3 (ENSPPYG00000036188) #20	JAK3 (ENSPPYG00000009724) #21	RPL18A (ENSPPYG00000009725) #22	SLC5A5 (ENSPPYG00000009726) #23	CCDC124 (ENSPPYG00000009727) #24	KCNN1 (ENSPPYG00000010554) #25	ARRDC2 (ENSPPYG00000009728) #26	IL12RB1 (ENSPPYG00000009729) #27	MAST3 (ENSPPYG00000009730) #28	PIK3R2 (ENSPPYG00000009731) #29	IFI30 (ENSPPYG00000034245) #30	ENSPPYG00000009732 #31	RAB3A (ENSPPYG00000009575) #32	PDE4C (ENSPPYG00000009734) #33	ENSPPYG00000029846	IQCN (ENSPPYG00000009735) #34	JUND (ENSPPYG00000030870) #35	LSM4 (ENSPPYG00000009736) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00940000161158.e.a	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	10	PLVAP (ENSGGOG00000006691) #7	CCDC194 (ENSGGOG00000043328) #8	BST2 (ENSGGOG00000015278)	MVB12A (ENSGGOG00000027234) #9	ENSGGOG00000002347 #11	SLC27A1 (ENSGGOG00000004966) #12	ENSGGOG00000003926 #13	NIBAN3 (ENSGGOG00000011785) #14	COLGALT1 (ENSGGOG00000008031) #15	UNC13A (ENSGGOG00000009113)	MAP1S (ENSGGOG00000007237) #17	FCHO1 (ENSGGOG00000011134) #18	B3GNT3 (ENSGGOG00000009249) #19	ENSGGOG00000037078	JAK3 (ENSGGOG00000005727) #21	RPL18A (ENSGGOG00000002870) #22	SLC5A5 (ENSGGOG00000005541) #23	CCDC124 (ENSGGOG00000004373) #24	ENSGGOG00000005791 #25	ARRDC2 (ENSGGOG00000005798) #26	ENSGGOG00000042605	IL12RB1 (ENSGGOG00000003006) #27	MAST3 (ENSGGOG00000016175) #28	ENSGGOG00000016197 #29	IFI30 (ENSGGOG00000012247) #30	MPV17L2 (ENSGGOG00000008883) #31	RAB3A (ENSGGOG00000008890) #32	PDE4C (ENSGGOG00000010732) #33	IQCN (ENSGGOG00000015207) #34	ENSGGOG00000028553 #35	LSM4 (ENSGGOG00000012914) #36
Gorilla	MODERN SPECIES	218																ENSGGOG00000000067 #22
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00940000161158.e.a	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Human	MODERN SPECIES	10	BST2 (ENSG00000130303)	MVB12A (ENSG00000141971) #9	TMEM221 (ENSG00000188051) #10	ENSG00000269035	NXNL1 (ENSG00000171773) #11	SLC27A1 (ENSG00000130304) #12	PGLS (ENSG00000130313) #13	NIBAN3 (ENSG00000167483) #14	COLGALT1 (ENSG00000130309) #15	UNC13A (ENSG00000130477)	MAP1S (ENSG00000130479) #17	FCHO1 (ENSG00000130475) #18	B3GNT3 (ENSG00000179913) #19	INSL3 (ENSG00000248099) #20	JAK3 (ENSG00000105639) #21	RPL18A (ENSG00000105640) #22	SLC5A5 (ENSG00000105641) #23	CCDC124 (ENSG00000007080) #24	KCNN1 (ENSG00000105642) #25	ARRDC2 (ENSG00000105643) #26	IL12RB1 (ENSG00000096996) #27	MAST3 (ENSG00000099308) #28	PIK3R2 (ENSG00000105647) #29	IFI30 (ENSG00000216490) #30	MPV17L2 (ENSG00000254858) #31	RAB3A (ENSG00000105649) #32	ENSG00000285188	PDE4C (ENSG00000105650) #33	ENSG00000284797	IQCN (ENSG00000130518) #34	JUND (ENSG00000130522) #35
Pan	ANCESTRAL SPECIES	14	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000164830	ENSGT00940000161827 #21	ENSGT00390000015797.c.b.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00940000161158.e.a.a	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Chimpanzee	MODERN SPECIES	10	BST2 (ENSPTRG00000010672)	MVB12A (ENSPTRG00000010673) #9	TMEM221 (ENSPTRG00000046047) #10	NXNL1 (ENSPTRG00000010675) #11	SLC27A1 (ENSPTRG00000010676) #12	PGLS (ENSPTRG00000010677) #13	NIBAN3 (ENSPTRG00000049752) #14	COLGALT1 (ENSPTRG00000010680) #15	ENSPTRG00000043394	UNC13A (ENSPTRG00000010681)	MAP1S (ENSPTRG00000010682) #17	FCHO1 (ENSPTRG00000010683) #18	B3GNT3 (ENSPTRG00000010684) #19	JAK3 (ENSPTRG00000038873)	JAK3 (ENSPTRG00000010685) #21	RPL18A (ENSPTRG00000010686) #22	SLC5A5 (ENSPTRG00000010687) #23	CCDC124 (ENSPTRG00000010688) #24	KCNN1 (ENSPTRG00000010689) #25	ARRDC2 (ENSPTRG00000010690) #26	ENSPTRG00000049154	IL12RB1 (ENSPTRG00000010692) #27	MAST3 (ENSPTRG00000010693) #28	PIK3R2 (ENSPTRG00000010694) #29	IFI30 (ENSPTRG00000010695) #30	MPV17L2 (ENSPTRG00000010696) #31	RAB3A (ENSPTRG00000010697) #32	PDE4C (ENSPTRG00000010699) #33	IQCN (ENSPTRG00000010700) #34	JUND (ENSPTRG00000042879) #35	LSM4 (ENSPTRG00000031470) #36
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	18	FEM1C (ENSPPAG00000039455)	ENSPPAG00000036727	CCDC112 (ENSPPAG00000043596)	PGGT1B (ENSPPAG00000040814)	TRIM36 (ENSPPAG00000038087)	KCNN2 (ENSPPAG00000043586) ##25	ENSPPAG00000012064	YTHDC2 (ENSPPAG00000018854)	MCC (ENSPPAG00000001501)	DCP2 (ENSPPAG00000042108)	ENSPPAG00000008683	ENSPPAG00000026840	SRP19 (ENSPPAG00000037062)	APC (ENSPPAG00000032467)	EPB41L4A (ENSPPAG00000040652)	ENSPPAG00000042559 #22	ENSPPAG00000039695	ENSPPAG00000031387	STARD4 (ENSPPAG00000039524)	CAMK4 (ENSPPAG00000041231)	ENSPPAG00000029092	WDR36 (ENSPPAG00000023560)	ENSPPAG00000043068	TSLP (ENSPPAG00000037495)	ENSPPAG00000029536	SLC25A46 (ENSPPAG00000042617)	TMEM232 (ENSPPAG00000039615)	ENSPPAG00000001922	ENSPPAG00000036482	MAN2A1 (ENSPPAG00000037961)	PJA2 (ENSPPAG00000039234)
Bonobo	MODERN SPECIES	22	MLANA (ENSPPAG00000038099)	KIAA2026 (ENSPPAG00000011370)	ENSPPAG00000037216	ENSPPAG00000003096	IL33 (ENSPPAG00000029130)	TPD52L3 (ENSPPAG00000032443)	UHRF2 (ENSPPAG00000027921)	GLDC (ENSPPAG00000041686)	ENSPPAG00000024827	ENSPPAG00000042614	ENSPPAG00000026658	KDM4C (ENSPPAG00000042410)	ENSPPAG00000030064	DMAC1 (ENSPPAG00000040685)	PTPRD (ENSPPAG00000032905)	ENSPPAG00000016213 #22	TYRP1 (ENSPPAG00000032608)	LURAP1L (ENSPPAG00000031027)	ENSPPAG00000036271	MPDZ (ENSPPAG00000028619)	ENSPPAG00000008881	ENSPPAG00000030129	ZDHHC21 (ENSPPAG00000038407)	CER1 (ENSPPAG00000038199)	FREM1 (ENSPPAG00000034460)	ENSPPAG00000033450	ENSPPAG00000030164	TTC39B (ENSPPAG00000029769)	SNAPC3 (ENSPPAG00000015962)	PSIP1 (ENSPPAG00000030461)	CCDC171 (ENSPPAG00000042501)
Bonobo	MODERN SPECIES	10	BST2 (ENSPPAG00000035052)	MVB12A (ENSPPAG00000036251) #9	ENSPPAG00000042447 #10	NXNL1 (ENSPPAG00000027259) #11	SLC27A1 (ENSPPAG00000042030) #12	PGLS (ENSPPAG00000027380) #13	NIBAN3 (ENSPPAG00000033054) #14	COLGALT1 (ENSPPAG00000036352) #15	ENSPPAG00000038649	UNC13A (ENSPPAG00000030394)	MAP1S (ENSPPAG00000037035) #17	FCHO1 (ENSPPAG00000040810) #18	B3GNT3 (ENSPPAG00000039505) #19	ENSPPAG00000033781	JAK3 (ENSPPAG00000040942) #21	ENSPPAG00000035235 #22	SLC5A5 (ENSPPAG00000028320) #23	CCDC124 (ENSPPAG00000031286) #24	KCNN1 (ENSPPAG00000027691) #25	ARRDC2 (ENSPPAG00000030581) #26	ENSPPAG00000030988	IL12RB1 (ENSPPAG00000035617) #27	MAST3 (ENSPPAG00000037942) #28	PIK3R2 (ENSPPAG00000028206) #29	IFI30 (ENSPPAG00000034079) #30	MPV17L2 (ENSPPAG00000039781) #31	RAB3A (ENSPPAG00000028870) #32	PDE4C (ENSPPAG00000032992) #33	IQCN (ENSPPAG00000036393) #34	ENSPPAG00000044045 #36	PGPEP1 (ENSPPAG00000029656) #37
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Rhinopithecus	DUPLICATION
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000164830	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b.c.a #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37	ENSGT00940000161872
Golden snub-nosed monkey	MODERN SPECIES	975	CCDC194 (ENSRROG00000037197) #8	BST2 (ENSRROG00000041878)	MVB12A (ENSRROG00000031814) #9	TMEM221 (ENSRROG00000029901) #10	NXNL1 (ENSRROG00000035527) #11	SLC27A1 (ENSRROG00000034378) #12	PGLS (ENSRROG00000037348) #13	NIBAN3 (ENSRROG00000030135) #14	COLGALT1 (ENSRROG00000000077) #15	UNC13A (ENSRROG00000039940)	MAP1S (ENSRROG00000031854) #17	FCHO1 (ENSRROG00000028170) #18	B3GNT3 (ENSRROG00000033304) #19	ENSRROG00000041239	JAK3 (ENSRROG00000018975) #21	ENSRROG00000010826 #22	SLC5A5 (ENSRROG00000031166) #23	CCDC124 (ENSRROG00000036830) #24
Rhinopithecus	ANCESTRAL SPECIES	340																ENSGT00390000015797.c.b.c.b #22	ENSGT00390000000805.k.b	ENSGT00940000154490.b	ENSGT00940000156459	ENSGT00940000160816	ENSGT00390000000083.b	ENSGT00940000159906	ENSGT01090000260017.c.b.a.a.e.c	ENSGT01090000260017.c.b.b.d.e	ENSGT01090000260017.c.b.b.d.f	ENSGT00390000002596	ENSGT01050000244888.a.a	ENSGT00390000017311	ENSGT00940000154635.a.d	ENSGT00940000161415	ENSGT00940000158147
Black snub-nosed monkey	MODERN SPECIES	996														ENSRBIG00000029653	SASH1 (ENSRBIG00000034667)	ENSRBIG00000028921 #22	ENSRBIG00000014329	EPHA6 (ENSRBIG00000020757)	ARL6 (ENSRBIG00000031963)	CRYBG3 (ENSRBIG00000033783)	RIOX2 (ENSRBIG00000032952)	GABRR3 (ENSRBIG00000032119)
Golden snub-nosed monkey	MODERN SPECIES	3356																ENSRROG00000040784 #22
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT00940000162453	ENSGT00940000162120	ENSGT00450000040421	ENSGT00950000183135.A.a	ENSGT00940000161740	ENSGT00940000154133.B	ENSGT00940000161006	ENSGT00390000009557.B	ENSGT00390000017625.d	ENSGT00390000009557.A.a	ENSGT00940000155230.gd	ENSGT00390000009557.A.b	ENSGT00390000009557.C	ENSGT00940000161745	ENSGT00940000158785	ENSGT00390000015797.c.b.d #22	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.f.b.b	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT01100000263497.B.f	ENSGT00950000183181.B.b	ENSGT00950000183024.a.b.b	ENSGT00950000183095.a.b.a.b.a	ENSGT00390000017583	ENSGT00940000159485	ENSGT00970000193421.A	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000161295
Golden snub-nosed monkey	MODERN SPECIES	2027	FOXA3 (ENSRROG00000041934)	IRF2BP1 (ENSRROG00000024812)	MYPOP (ENSRROG00000031078)	NANOS2 (ENSRROG00000014903)	NOVA2 (ENSRROG00000037399)	CCDC61 (ENSRROG00000032654)	PGLYRP1 (ENSRROG00000035762)	IGFL4 (ENSRROG00000043261)	ENSRROG00000043631	IGFL3 (ENSRROG00000039749)	ENSRROG00000045549	IGFL2 (ENSRROG00000012003)	IGFL1 (ENSRROG00000029689)	HIF3A (ENSRROG00000032780)	PPP5C (ENSRROG00000027318)	ENSRROG00000038440 #22	PNMA8C (ENSRROG00000027253)	PNMA8A (ENSRROG00000013610)	ENSRROG00000035990	CALM3 (ENSRROG00000033594)	PTGIR (ENSRROG00000035701)	ENSRROG00000045208	DACT3 (ENSRROG00000044269)	PRKD2 (ENSRROG00000034944)	STRN4 (ENSRROG00000042099)	FKRP (ENSRROG00000007497)	SLC1A5 (ENSRROG00000038480)	AP2S1 (ENSRROG00000045451)	ARHGAP35 (ENSRROG00000035853)	NPAS1 (ENSRROG00000043828)	TMEM160 (ENSRROG00000043669)
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1473				ENSRBIG00000031276	SLC25A38 (ENSRBIG00000031291)	ENSRBIG00000030047	CX3CR1 (ENSRBIG00000042954)	XIRP1 (ENSRBIG00000017481)	CSRNP1 (ENSRBIG00000041880)	TTC21A (ENSRBIG00000038096)	GORASP1 (ENSRBIG00000036324)	WDR48 (ENSRBIG00000032906)	SCN11A (ENSRBIG00000008648)	SCN10A (ENSRBIG00000038186)	SCN5A (ENSRBIG00000029316)	ENSRBIG00000014824 #22	EXOG (ENSRBIG00000029194)	ACVR2B (ENSRBIG00000038341)
Black snub-nosed monkey	MODERN SPECIES	621	PLVAP (ENSRBIG00000038932) #7	CCDC194 (ENSRBIG00000036240) #8	BST2 (ENSRBIG00000014767)	MVB12A (ENSRBIG00000042313) #9	TMEM221 (ENSRBIG00000038861) #10	NXNL1 (ENSRBIG00000036669) #11	SLC27A1 (ENSRBIG00000030504) #12	PGLS (ENSRBIG00000027540) #13	NIBAN3 (ENSRBIG00000038396) #14	COLGALT1 (ENSRBIG00000000371) #15	UNC13A (ENSRBIG00000044817)	MAP1S (ENSRBIG00000044776) #17	FCHO1 (ENSRBIG00000036439) #18	INSL3 (ENSRBIG00000030880) #20	JAK3 (ENSRBIG00000037734) #21	ENSRBIG00000038597 #22	SLC5A5 (ENSRBIG00000020223) #23	CCDC124 (ENSRBIG00000035477) #24	KCNN1 (ENSRBIG00000039165) #25	ARRDC2 (ENSRBIG00000041831) #26	IL12RB1 (ENSRBIG00000033720) #27	MAST3 (ENSRBIG00000037301) #28	PIK3R2 (ENSRBIG00000031224) #29	IFI30 (ENSRBIG00000041792) #30	MPV17L2 (ENSRBIG00000033280) #31	RAB3A (ENSRBIG00000029506) #32	PDE4C (ENSRBIG00000028744) #33	IQCN (ENSRBIG00000029845) #34	LSM4 (ENSRBIG00000024717) #36	PGPEP1 (ENSRBIG00000043819) #37	GDF15 (ENSRBIG00000038712)
Black snub-nosed monkey	MODERN SPECIES	477	SYMPK (ENSRBIG00000040963)	FOXA3 (ENSRBIG00000037992)	IRF2BP1 (ENSRBIG00000025631)	MYPOP (ENSRBIG00000035669)	NANOS2 (ENSRBIG00000023726)	CCDC61 (ENSRBIG00000027796)	PGLYRP1 (ENSRBIG00000041217)	IGFL4 (ENSRBIG00000017354)	ENSRBIG00000026369	ENSRBIG00000041617	ENSRBIG00000037692	IGFL2 (ENSRBIG00000013672)	IGFL1 (ENSRBIG00000041594)	HIF3A (ENSRBIG00000037340)	PPP5C (ENSRBIG00000043486)	ENSRBIG00000041650 #22	PNMA8C (ENSRBIG00000007752)	PNMA8A (ENSRBIG00000032652)	PNMA8B (ENSRBIG00000043852)	ENSRBIG00000040350	PTGIR (ENSRBIG00000039814)	GNG8 (ENSRBIG00000040120)	ENSRBIG00000037645	PRKD2 (ENSRBIG00000002509)	STRN4 (ENSRBIG00000030977)	SLC1A5 (ENSRBIG00000032793)	AP2S1 (ENSRBIG00000041720)	ARHGAP35 (ENSRBIG00000030306)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00910000147458	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	227	TSSK3 (ENSCATG00000043974)	BSDC1 (ENSCATG00000014764)	ZBTB8B (ENSCATG00000042686)	ZBTB8A (ENSCATG00000043480)	ENSCATG00000043551	ENSCATG00000043676	ENSCATG00000044538	SYNC (ENSCATG00000014931)	KIAA1522 (ENSCATG00000044256)	YARS1 (ENSCATG00000044394)	S100PBP (ENSCATG00000043950)	FNDC5 (ENSCATG00000043774)	HPCA (ENSCATG00000043199)	TMEM54 (ENSCATG00000029359)	RNF19B (ENSCATG00000033356)	ENSCATG00000044005 #22	ENSCATG00000020052	AZIN2 (ENSCATG00000044645)	TRIM62 (ENSCATG00000043211)	ZNF362 (ENSCATG00000043543)	A3GALT2 (ENSCATG00000043548)	PHC2 (ENSCATG00000043790)	ZSCAN20 (ENSCATG00000042236)	HMGB4 (ENSCATG00000006414)	CSMD2 (ENSCATG00000029554)	C1orf94 (ENSCATG00000042668)	ENSCATG00000002279	GJB5 (ENSCATG00000003985)	GJB4 (ENSCATG00000004245)	GJB3 (ENSCATG00000006471)	ENSCATG00000006495
Sooty mangabey	MODERN SPECIES	347	BST2 (ENSCATG00000042329)	MVB12A (ENSCATG00000030035) #9	TMEM221 (ENSCATG00000043714) #10	NXNL1 (ENSCATG00000043719) #11	SLC27A1 (ENSCATG00000033569) #12	PGLS (ENSCATG00000029799) #13	NIBAN3 (ENSCATG00000030749) #14	COLGALT1 (ENSCATG00000041379) #15	ENSCATG00000022400	UNC13A (ENSCATG00000034254)	MAP1S (ENSCATG00000031132) #17	FCHO1 (ENSCATG00000031667) #18	B3GNT3 (ENSCATG00000030720) #19	ENSCATG00000031053	JAK3 (ENSCATG00000022241) #21	ENSCATG00000030485 #22	SLC5A5 (ENSCATG00000035823) #23	CCDC124 (ENSCATG00000043075) #24	KCNN1 (ENSCATG00000044072) #25	ARRDC2 (ENSCATG00000042338) #26	IL12RB1 (ENSCATG00000033199) #27	MAST3 (ENSCATG00000037793) #28	PIK3R2 (ENSCATG00000035498) #29	IFI30 (ENSCATG00000030819) #30	MPV17L2 (ENSCATG00000036815) #31	RAB3A (ENSCATG00000042078) #32	PDE4C (ENSCATG00000021874) #33	IQCN (ENSCATG00000029221) #34	JUND (ENSCATG00000041206) #35	LSM4 (ENSCATG00000029311) #36	PGPEP1 (ENSCATG00000033807) #37
Sooty mangabey	MODERN SPECIES	228	RSPH6A (ENSCATG00000031236)	SYMPK (ENSCATG00000045107)	FOXA3 (ENSCATG00000040589)	IRF2BP1 (ENSCATG00000019478)	MYPOP (ENSCATG00000044811)	NANOS2 (ENSCATG00000018951)	NOVA2 (ENSCATG00000045122)	CCDC61 (ENSCATG00000033104)	PGLYRP1 (ENSCATG00000018338)	IGFL4 (ENSCATG00000019969)	ENSCATG00000032983	IGFL3 (ENSCATG00000018431)	IGFL1 (ENSCATG00000040141)	HIF3A (ENSCATG00000013440)	PPP5C (ENSCATG00000031479)	ENSCATG00000021418 #22	CCDC8 (ENSCATG00000030098)	PNMA8C (ENSCATG00000016093)	PNMA8A (ENSCATG00000037135)	ENSCATG00000011877	CALM3 (ENSCATG00000036622)	PTGIR (ENSCATG00000044691)	GNG8 (ENSCATG00000038798)	DACT3 (ENSCATG00000028958)	PRKD2 (ENSCATG00000012657)	STRN4 (ENSCATG00000041998)	FKRP (ENSCATG00000015421)	SLC1A5 (ENSCATG00000041986)	AP2S1 (ENSCATG00000030501)	ARHGAP35 (ENSCATG00000025751)	NPAS1 (ENSCATG00000044490)
Drill	DUPLICATION
Drill	MODERN SPECIES	426	FAM229A (ENSMLEG00000030901)	TSSK3 (ENSMLEG00000032576)	BSDC1 (ENSMLEG00000030871)	ZBTB8B (ENSMLEG00000005706)	ZBTB8A (ENSMLEG00000027636)	ENSMLEG00000036545	ENSMLEG00000039081	SYNC (ENSMLEG00000017318)	KIAA1522 (ENSMLEG00000032889)	YARS1 (ENSMLEG00000041315)	S100PBP (ENSMLEG00000027569)	FNDC5 (ENSMLEG00000038542)	HPCA (ENSMLEG00000035897)	TMEM54 (ENSMLEG00000036781)	RNF19B (ENSMLEG00000041441)	ENSMLEG00000043347 #22	ENSMLEG00000025148	AZIN2 (ENSMLEG00000037479)	TRIM62 (ENSMLEG00000018754)
Drill	MODERN SPECIES	254													IGFL1 (ENSMLEG00000042082)	HIF3A (ENSMLEG00000030835)	PPP5C (ENSMLEG00000043928)	ENSMLEG00000029399 #22	CCDC8 (ENSMLEG00000038841)	PNMA8C (ENSMLEG00000012922)	PNMA8A (ENSMLEG00000037418)	ENSMLEG00000038995	CALM3 (ENSMLEG00000040728)	PTGIR (ENSMLEG00000039111)	GNG8 (ENSMLEG00000041963)	ENSMLEG00000042860	PRKD2 (ENSMLEG00000041161)	STRN4 (ENSMLEG00000039813)	SLC1A5 (ENSMLEG00000039768)	AP2S1 (ENSMLEG00000034145)	ARHGAP35 (ENSMLEG00000042586)	ENSMLEG00000038871	ZC3H4 (ENSMLEG00000007946)
Drill	MODERN SPECIES	270								EPOR (ENSMLEG00000031245)	RGL3 (ENSMLEG00000031455)	ODAD3 (ENSMLEG00000033551)	PRKCSH (ENSMLEG00000035238)	ENSMLEG00000009747	ELAVL3 (ENSMLEG00000013976)	ZNF653 (ENSMLEG00000017417)	ECSIT (ENSMLEG00000027742)	ENSMLEG00000028262 #22
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	12	RSPH6A (ENSPANG00000011597)	SYMPK (ENSPANG00000019930)	FOXA3 (ENSPANG00000034535)	IRF2BP1 (ENSPANG00000002641)	MYPOP (ENSPANG00000046784)	NANOS2 (ENSPANG00000009327)	NOVA2 (ENSPANG00000023868)	CCDC61 (ENSPANG00000009365)	PGLYRP1 (ENSPANG00000048485)	IGFL3 (ENSPANG00000019926)	ENSPANG00000038110	ENSPANG00000039314	ENSPANG00000044504	HIF3A (ENSPANG00000014598)	PPP5C (ENSPANG00000002966)	ENSPANG00000029483 #22	CCDC8 (ENSPANG00000020252)	PNMA8C (ENSPANG00000033741)	PNMA8A (ENSPANG00000018286)	PNMA8B (ENSPANG00000039504)	ENSPANG00000015474	PTGIR (ENSPANG00000019287)	GNG8 (ENSPANG00000029260)	DACT3 (ENSPANG00000021672)	PRKD2 (ENSPANG00000008367)	STRN4 (ENSPANG00000017664)	FKRP (ENSPANG00000003944)	SLC1A5 (ENSPANG00000024227)	AP2S1 (ENSPANG00000031161)	ARHGAP35 (ENSPANG00000018862)	NPAS1 (ENSPANG00000014704)
Olive baboon	MODERN SPECIES	12	BST2 (ENSPANG00000001190)	MVB12A (ENSPANG00000032663) #9	TMEM221 (ENSPANG00000029265) #10	NXNL1 (ENSPANG00000001191) #11	SLC27A1 (ENSPANG00000002670) #12	PGLS (ENSPANG00000004444) #13	NIBAN3 (ENSPANG00000004465) #14	COLGALT1 (ENSPANG00000017401) #15	ENSPANG00000042606	UNC13A (ENSPANG00000002534)	MAP1S (ENSPANG00000019796) #17	FCHO1 (ENSPANG00000015033) #18	B3GNT3 (ENSPANG00000038135) #19	INSL3 (ENSPANG00000008848) #20	JAK3 (ENSPANG00000004912) #21	RPL18A (ENSPANG00000033114) #22	SLC5A5 (ENSPANG00000023922) #23	ENSPANG00000037095	CCDC124 (ENSPANG00000004464) #24	KCNN1 (ENSPANG00000010107) #25	ARRDC2 (ENSPANG00000001630) #26	IL12RB1 (ENSPANG00000031075) #27	MAST3 (ENSPANG00000004443) #28	PIK3R2 (ENSPANG00000002533) #29	IFI30 (ENSPANG00000034060) #30	MPV17L2 (ENSPANG00000013957) #31	RAB3A (ENSPANG00000009376) #32	PDE4C (ENSPANG00000004911) #33	ENSPANG00000048218	IQCN (ENSPANG00000015622) #34	LSM4 (ENSPANG00000014399) #36
Macaca	ANCESTRAL SPECIES	21	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	217	FAM229A (ENSMNEG00000041646)	BSDC1 (ENSMNEG00000027802)	TSSK3 (ENSMNEG00000043746)	ZBTB8B (ENSMNEG00000036353)	ZBTB8A (ENSMNEG00000032216)	ZBTB8OS (ENSMNEG00000026646)	RBBP4 (ENSMNEG00000043935)	SYNC (ENSMNEG00000042084)	KIAA1522 (ENSMNEG00000037110)	YARS1 (ENSMNEG00000031865)	S100PBP (ENSMNEG00000031213)	FNDC5 (ENSMNEG00000036562)	HPCA (ENSMNEG00000038488)	TMEM54 (ENSMNEG00000034684)	RNF19B (ENSMNEG00000042794)	ENSMNEG00000031718 #22	ENSMNEG00000031527	AZIN2 (ENSMNEG00000045478)	TRIM62 (ENSMNEG00000043838)	ZNF362 (ENSMNEG00000009010)	A3GALT2 (ENSMNEG00000014340)	PHC2 (ENSMNEG00000008930)	ZSCAN20 (ENSMNEG00000015902)	CSMD2 (ENSMNEG00000040856)	HMGB4 (ENSMNEG00000025457)	C1orf94 (ENSMNEG00000015831)	GJB5 (ENSMNEG00000005315)	GJB4 (ENSMNEG00000006153)	ENSMNEG00000010043	SMIM12 (ENSMNEG00000015964)	ENSMNEG00000006704
Pig-tailed macaque	MODERN SPECIES	76	CCDC194 (ENSMNEG00000042860) #8	BST2 (ENSMNEG00000036358)	MVB12A (ENSMNEG00000041427) #9	TMEM221 (ENSMNEG00000034608) #10	NXNL1 (ENSMNEG00000035345) #11	SLC27A1 (ENSMNEG00000043128) #12	PGLS (ENSMNEG00000044836) #13	NIBAN3 (ENSMNEG00000017237) #14	COLGALT1 (ENSMNEG00000026844) #15	UNC13A (ENSMNEG00000043991)	MAP1S (ENSMNEG00000042105) #17	FCHO1 (ENSMNEG00000033986) #18	B3GNT3 (ENSMNEG00000033297) #19	ENSMNEG00000030211	JAK3 (ENSMNEG00000040637) #21	ENSMNEG00000038397 #22	SLC5A5 (ENSMNEG00000043123) #23	CCDC124 (ENSMNEG00000036237) #24	KCNN1 (ENSMNEG00000030766) #25	ARRDC2 (ENSMNEG00000043515) #26	IL12RB1 (ENSMNEG00000024389) #27	MAST3 (ENSMNEG00000038739) #28	PIK3R2 (ENSMNEG00000028516) #29	IFI30 (ENSMNEG00000031440) #30	MPV17L2 (ENSMNEG00000034679) #31	RAB3A (ENSMNEG00000030363) #32	PDE4C (ENSMNEG00000018173) #33	IQCN (ENSMNEG00000031188) #34	LSM4 (ENSMNEG00000042899) #36	PGPEP1 (ENSMNEG00000036180) #37	GDF15 (ENSMNEG00000012923)
Pig-tailed macaque	MODERN SPECIES	551	RSPH6A (ENSMNEG00000040843)	SYMPK (ENSMNEG00000019439)	FOXA3 (ENSMNEG00000040470)	IRF2BP1 (ENSMNEG00000017409)	MYPOP (ENSMNEG00000031648)	NANOS2 (ENSMNEG00000004633)	NOVA2 (ENSMNEG00000040253)	CCDC61 (ENSMNEG00000035233)	PGLYRP1 (ENSMNEG00000011734)	ENSMNEG00000023075	ENSMNEG00000041271	IGFL3 (ENSMNEG00000044243)	IGFL1 (ENSMNEG00000040374)	HIF3A (ENSMNEG00000038570)	PPP5C (ENSMNEG00000029801)	ENSMNEG00000039917 #22	CCDC8 (ENSMNEG00000035328)	PNMA8C (ENSMNEG00000013860)	PNMA8A (ENSMNEG00000028579)	ENSMNEG00000035646	CALM3 (ENSMNEG00000038313)	PTGIR (ENSMNEG00000037044)	GNG8 (ENSMNEG00000029400)	DACT3 (ENSMNEG00000005969)	PRKD2 (ENSMNEG00000038676)	STRN4 (ENSMNEG00000042544)	FKRP (ENSMNEG00000013306)	SLC1A5 (ENSMNEG00000040803)	AP2S1 (ENSMNEG00000036216)	ARHGAP35 (ENSMNEG00000029940)	NPAS1 (ENSMNEG00000038438)
Pig-tailed macaque	MODERN SPECIES	281	ENSMNEG00000037962	ALDH1A3 (ENSMNEG00000034012)	LRRK1 (ENSMNEG00000032623)	CHSY1 (ENSMNEG00000005874)	SELENOS (ENSMNEG00000038487)	SNRPA1 (ENSMNEG00000044916)	PCSK6 (ENSMNEG00000002880)	TM2D3 (ENSMNEG00000042388)	TARS3 (ENSMNEG00000034952)	ENSMNEG00000028238	OR4F6 (ENSMNEG00000028223)	OR4K17 (ENSMNEG00000003536)	OR4K15 (ENSMNEG00000029269)	OR4K2 (ENSMNEG00000000674)	OR4N2 (ENSMNEG00000021343)	ENSMNEG00000042268 #22	TTC5 (ENSMNEG00000031175)	CCNB1IP1 (ENSMNEG00000003014)	PARP2 (ENSMNEG00000036792)	TEP1 (ENSMNEG00000032040)	KLHL33 (ENSMNEG00000039764)	OSGEP (ENSMNEG00000035872)	APEX1 (ENSMNEG00000036944)	PIP4P1 (ENSMNEG00000027902)	PNP (ENSMNEG00000029067)	ENSMNEG00000012787
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000007686.a	ENSGT00500000044869.a.b	ENSGT00390000017045	ENSGT00940000162453	ENSGT00940000162120	ENSGT00450000040421	ENSGT00950000183135.A.a	ENSGT00940000161740	ENSGT00940000154133.B	ENSGT00940000161006	ENSGT00390000009557.B	ENSGT00390000009557.A.a	ENSGT00390000009557.C	ENSGT00940000161745	ENSGT00940000158785	ENSGT00390000015797.c.b #22	ENSGT01030000234522.C.b.f.a	ENSGT01030000234522.C.b.e.b.a.a.b	ENSGT01030000234522.C.b.f.b.a	ENSGT01030000234522.C.b.f.b.b	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00950000183181.B.b	ENSGT00950000183024.a.b.b	ENSGT00950000183095.a.b.a.b.a	ENSGT00390000017583	ENSGT00940000159485	ENSGT00970000193421.A	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000161295
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	10	RSPH6A (ENSMMUG00000006590)	ENSMMUG00000056347	SYMPK (ENSMMUG00000015428)	FOXA3 (ENSMMUG00000015438)	MYPOP (ENSMMUG00000049820)	NANOS2 (ENSMMUG00000008103)	NOVA2 (ENSMMUG00000004085)	CCDC61 (ENSMMUG00000008741)	PGLYRP1 (ENSMMUG00000008742)	ENSMMUG00000041352	IGFL3 (ENSMMUG00000063797)	ENSMMUG00000044928	IGFL1 (ENSMMUG00000020229)	HIF3A (ENSMMUG00000000215)	PPP5C (ENSMMUG00000000217)	ENSMMUG00000000218 #22	CCDC8 (ENSMMUG00000003190)	PNMA8C (ENSMMUG00000061795)	PNMA8A (ENSMMUG00000005827)	ENSMMUG00000053552	CALM3 (ENSMMUG00000017921)	PTGIR (ENSMMUG00000017922)	DACT3 (ENSMMUG00000017924)	ENSMMUG00000051115	PRKD2 (ENSMMUG00000017927)	STRN4 (ENSMMUG00000017930)	FKRP (ENSMMUG00000028743)	SLC1A5 (ENSMMUG00000022163)	AP2S1 (ENSMMUG00000000833)	ARHGAP35 (ENSMMUG00000011332)	NPAS1 (ENSMMUG00000011330)
Rhesus	MODERN SPECIES	17	OR4F6 (ENSMMUG00000055595)	OR4F15 (ENSMMUG00000052931)	ENSMMUG00000023314	OR4N5 (ENSMMUG00000061666)	OR4K17 (ENSMMUG00000001863)	OR4K13 (ENSMMUG00000060984)	OR4Q2 (ENSMMUG00000029455)	OR4K15 (ENSMMUG00000003034)	OR4K1 (ENSMMUG00000023047)	OR4K5 (ENSMMUG00000012852)	OR4K2 (ENSMMUG00000002855)	OR4N2 (ENSMMUG00000005702)	OR4N4 (ENSMMUG00000058348)	OR4M1 (ENSMMUG00000005704)	OR4Q3 (ENSMMUG00000059418)	ENSMMUG00000006283 #22	ENSMMUG00000065206	TTC5 (ENSMMUG00000016250)	CCNB1IP1 (ENSMMUG00000016251)	TEP1 (ENSMMUG00000016255)	PARP2 (ENSMMUG00000016253)	KLHL33 (ENSMMUG00000055905)	OSGEP (ENSMMUG00000006848)	APEX1 (ENSMMUG00000048039)	PIP4P1 (ENSMMUG00000056289)	PNP (ENSMMUG00000019126)	ENSMMUG00000049446	ENSMMUG00000046614	RNASE10 (ENSMMUG00000019128)	RNASE9 (ENSMMUG00000052204)	ENSMMUG00000058595
Rhesus	MODERN SPECIES	93														ENSMMUG00000059261 #20	ENSMMUG00000050201 #21	ENSMMUG00000062026 #22
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	10	DMPK (ENSMFAG00000037913)	DMWD (ENSMFAG00000033696)	RSPH6A (ENSMFAG00000029233)	SYMPK (ENSMFAG00000038558)	FOXA3 (ENSMFAG00000040557)	IRF2BP1 (ENSMFAG00000061076)	NANOS2 (ENSMFAG00000017215)	NOVA2 (ENSMFAG00000043672)	CCDC61 (ENSMFAG00000035042)	PGLYRP1 (ENSMFAG00000032464)	ENSMFAG00000001824	IGFL3 (ENSMFAG00000003659)	ENSMFAG00000057751	HIF3A (ENSMFAG00000025583)	PPP5C (ENSMFAG00000034179)	ENSMFAG00000036651 #22	CCDC8 (ENSMFAG00000041847)	PNMA8C (ENSMFAG00000029984)	PNMA8A (ENSMFAG00000006014)	ENSMFAG00000035539	CALM3 (ENSMFAG00000036156)	ENSMFAG00000002915	ENSMFAG00000044510	ENSMFAG00000030779	PRKD2 (ENSMFAG00000045883)	STRN4 (ENSMFAG00000035843)	SLC1A5 (ENSMFAG00000044927)	AP2S1 (ENSMFAG00000022670)	ARHGAP35 (ENSMFAG00000041192)	NPAS1 (ENSMFAG00000018045)	ENSMFAG00000001653
Crab-eating macaque	MODERN SPECIES	17	OR4F15 (ENSMFAG00000050806)	ENSMFAG00000060991	ENSMFAG00000056105	OR4N5 (ENSMFAG00000057395)	OR4K17 (ENSMFAG00000012628)	OR4K13 (ENSMFAG00000013050)	OR4Q2 (ENSMFAG00000000182)	OR4K15 (ENSMFAG00000031401)	OR4K1 (ENSMFAG00000062818)	OR4K5 (ENSMFAG00000051665)	OR4K2 (ENSMFAG00000015734)	OR4N2 (ENSMFAG00000015854)	ENSMFAG00000051827	OR11H7 (ENSMFAG00000059181)	OR4Q3 (ENSMFAG00000017541)	ENSMFAG00000040648 #22	OR11H4 (ENSMFAG00000048675)	ENSMFAG00000057301	TTC5 (ENSMFAG00000001282)	CCNB1IP1 (ENSMFAG00000037728)	PARP2 (ENSMFAG00000013069)	TEP1 (ENSMFAG00000001130)	KLHL33 (ENSMFAG00000042662)	OSGEP (ENSMFAG00000045591)	APEX1 (ENSMFAG00000002565)	PIP4P1 (ENSMFAG00000039203)	ENSMFAG00000000419	ENSMFAG00000053036	ENSMFAG00000052769	ENSMFAG00000051767	ENSMFAG00000031266
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	25	DMWD (ENSCSAG00000003130)	RSPH6A (ENSCSAG00000003122)	SYMPK (ENSCSAG00000003115)	FOXA3 (ENSCSAG00000003110)	IRF2BP1 (ENSCSAG00000019628)	MYPOP (ENSCSAG00000003108)	NANOS2 (ENSCSAG00000019629)	NOVA2 (ENSCSAG00000003105)	CCDC61 (ENSCSAG00000003098)	PGLYRP1 (ENSCSAG00000003083)	IGFL4 (ENSCSAG00000003076)	IGFL3 (ENSCSAG00000003072)	IGFL1 (ENSCSAG00000003071)	HIF3A (ENSCSAG00000003068)	PPP5C (ENSCSAG00000003061)	ENSCSAG00000019630 #22	ENSCSAG00000019631	CCDC8 (ENSCSAG00000019632)	PNMA8A (ENSCSAG00000003053)	PNMA8B (ENSCSAG00000019633)	ENSCSAG00000019634	CALM3 (ENSCSAG00000003050)	PTGIR (ENSCSAG00000003043)	GNG8 (ENSCSAG00000003040)	DACT3 (ENSCSAG00000003035)	PRKD2 (ENSCSAG00000003028)	STRN4 (ENSCSAG00000003022)	FKRP (ENSCSAG00000019635)	ENSCSAG00000003016	ENSCSAG00000019636	ARHGAP35 (ENSCSAG00000003015)
Vervet Monkey	MODERN SPECIES	25	ANO8 (ENSCSAG00000005616)	PLVAP (ENSCSAG00000005605) #7	BST2 (ENSCSAG00000005601)	MVB12A (ENSCSAG00000005599) #9	TMEM221 (ENSCSAG00000005595) #10	NXNL1 (ENSCSAG00000005592) #11	SLC27A1 (ENSCSAG00000005579) #12	PGLS (ENSCSAG00000005564) #13	COLGALT1 (ENSCSAG00000005562) #15	UNC13A (ENSCSAG00000005543)	MAP1S (ENSCSAG00000005503) #17	FCHO1 (ENSCSAG00000005496) #18	B3GNT3 (ENSCSAG00000005482) #19	INSL3 (ENSCSAG00000005480) #20	JAK3 (ENSCSAG00000005476) #21	RPL18A (ENSCSAG00000005467) #22	ENSCSAG00000005464 #23	CCDC124 (ENSCSAG00000005462) #24	KCNN1 (ENSCSAG00000005458) #25	ARRDC2 (ENSCSAG00000005446) #26	IL12RB1 (ENSCSAG00000005439) #27	MAST3 (ENSCSAG00000005430) #28	PIK3R2 (ENSCSAG00000005413) #29	IFI30 (ENSCSAG00000005389) #30	MPV17L2 (ENSCSAG00000005386) #31	RAB3A (ENSCSAG00000005381) #32	PDE4C (ENSCSAG00000005377) #33	ENSCSAG00000005372	JUND (ENSCSAG00000018498) #35	LSM4 (ENSCSAG00000005370) #36	PGPEP1 (ENSCSAG00000005365) #37
Platyrrhini	ANCESTRAL SPECIES	25	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Cebidae	ANCESTRAL SPECIES	8	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Marmoset	MODERN SPECIES	14	ENSCJAG00000009764	ENSCJAG00000078412	MVB12A (ENSCJAG00000013764) #9	TMEM221 (ENSCJAG00000036544) #10	NXNL1 (ENSCJAG00000013780) #11	SLC27A1 (ENSCJAG00000013783) #12	PGLS (ENSCJAG00000013798) #13	NIBAN3 (ENSCJAG00000013801) #14	COLGALT1 (ENSCJAG00000013838) #15	UNC13A (ENSCJAG00000013861)	MAP1S (ENSCJAG00000013920) #17	FCHO1 (ENSCJAG00000013943) #18	B3GNT3 (ENSCJAG00000011816) #19	INSL3 (ENSCJAG00000074898) #20	JAK3 (ENSCJAG00000038589) #21	RPL18A (ENSCJAG00000040183) #22	SLC5A5 (ENSCJAG00000014011) #23	CCDC124 (ENSCJAG00000039582) #24	KCNN1 (ENSCJAG00000014026) #25	ARRDC2 (ENSCJAG00000036002) #26	IL12RB1 (ENSCJAG00000014045) #27	ENSCJAG00000072185 #32	MAST3 (ENSCJAG00000014057) #28	PIK3R2 (ENSCJAG00000014073) #29	IFI30 (ENSCJAG00000014094) #30	MPV17L2 (ENSCJAG00000014104) #31	PDE4C (ENSCJAG00000042536) #33	ENSCJAG00000071787	ENSCJAG00000065876	IQCN (ENSCJAG00000014148) #34	JUND (ENSCJAG00000059058) #35
Cebidae_a	ANCESTRAL SPECIES	48	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	87			HS6ST1 (ENSSBOG00000018960)	ENSSBOG00000022226	UGGT1 (ENSSBOG00000028947)	ENSSBOG00000033515	SAP130 (ENSSBOG00000030158)	AMMECR1L (ENSSBOG00000034228)	ENSSBOG00000019068	WDR33 (ENSSBOG00000030950)	GPR17 (ENSSBOG00000012567)	LIMS2 (ENSSBOG00000027875)	MYO7B (ENSSBOG00000031257)	IWS1 (ENSSBOG00000021948)	ENSSBOG00000032508	ENSSBOG00000028881 #22	ENSSBOG00000027864	MAP3K2 (ENSSBOG00000025709)	BIN1 (ENSSBOG00000035776)	CYP27C1 (ENSSBOG00000030349)	ENSSBOG00000033926	ENSSBOG00000031426	ERCC3 (ENSSBOG00000023079)	ENSSBOG00000032595	ENSSBOG00000015719	TEX51 (ENSSBOG00000036266)	GYPC (ENSSBOG00000036265)	CNTNAP5 (ENSSBOG00000019984)	ENSSBOG00000030438	TSN (ENSSBOG00000028579)	NIFK (ENSSBOG00000033603)
Bolivian squirrel monkey	MODERN SPECIES	97		ZNF326 (ENSSBOG00000034170)	ENSSBOG00000025634	BARHL2 (ENSSBOG00000022168)	ZNF644 (ENSSBOG00000025807)	HFM1 (ENSSBOG00000027456)	CDC7 (ENSSBOG00000026796)	TGFBR3 (ENSSBOG00000034519)	ENSSBOG00000032704	ENSSBOG00000026362	BRDT (ENSSBOG00000020614)	EPHX4 (ENSSBOG00000029335)	ENSSBOG00000033324	BTBD8 (ENSSBOG00000033979)	C1orf146 (ENSSBOG00000017637)	ENSSBOG00000024802 #22	GLMN (ENSSBOG00000011268)	RPAP2 (ENSSBOG00000028835)	GFI1 (ENSSBOG00000031300)	EVI5 (ENSSBOG00000021898)	DIPK1A (ENSSBOG00000020486)	MTF2 (ENSSBOG00000021350)	TMED5 (ENSSBOG00000034141)	CCDC18 (ENSSBOG00000025896)	DR1 (ENSSBOG00000021041)	FNBP1L (ENSSBOG00000026856)	BCAR3 (ENSSBOG00000020011)	DNTTIP2 (ENSSBOG00000030305)	GCLM (ENSSBOG00000025418)	ENSSBOG00000019384	ABCA4 (ENSSBOG00000016235)
Bolivian squirrel monkey	MODERN SPECIES	199	PLVAP (ENSSBOG00000025435) #7	CCDC194 (ENSSBOG00000004159) #8	BST2 (ENSSBOG00000027062)	MVB12A (ENSSBOG00000030053) #9	TMEM221 (ENSSBOG00000020623) #10	SLC27A1 (ENSSBOG00000030744) #12	PGLS (ENSSBOG00000035551) #13	NIBAN3 (ENSSBOG00000029187) #14	COLGALT1 (ENSSBOG00000026374) #15	UNC13A (ENSSBOG00000023664)	MAP1S (ENSSBOG00000020295) #17	FCHO1 (ENSSBOG00000021051) #18	B3GNT3 (ENSSBOG00000001743) #19	INSL3 (ENSSBOG00000027898) #20	JAK3 (ENSSBOG00000030552) #21	RPL18A (ENSSBOG00000033088) #22	SLC5A5 (ENSSBOG00000026806) #23	CCDC124 (ENSSBOG00000034670) #24	KCNN1 (ENSSBOG00000002510) #25	ARRDC2 (ENSSBOG00000024827) #26	IL12RB1 (ENSSBOG00000023917) #27	MAST3 (ENSSBOG00000029746) #28	PIK3R2 (ENSSBOG00000034199) #29	IFI30 (ENSSBOG00000023021) #30	MPV17L2 (ENSSBOG00000027135) #31	RAB3A (ENSSBOG00000022908) #32	PDE4C (ENSSBOG00000030911) #33	IQCN (ENSSBOG00000025869) #34	LSM4 (ENSSBOG00000022455) #36	PGPEP1 (ENSSBOG00000026995) #37	GDF15 (ENSSBOG00000031274)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	280	CCDC194 (ENSCCAG00000035108) #8	BST2 (ENSCCAG00000015973)	MVB12A (ENSCCAG00000023490) #9	TMEM221 (ENSCCAG00000021655) #10	NXNL1 (ENSCCAG00000029830) #11	SLC27A1 (ENSCCAG00000009172) #12	PGLS (ENSCCAG00000030396) #13	NIBAN3 (ENSCCAG00000024357) #14	COLGALT1 (ENSCCAG00000037136) #15	UNC13A (ENSCCAG00000037679)	MAP1S (ENSCCAG00000035693) #17	FCHO1 (ENSCCAG00000034026) #18	B3GNT3 (ENSCCAG00000031182) #19	ENSCCAG00000025100	JAK3 (ENSCCAG00000032638) #21	RPL18A (ENSCCAG00000022396) #22	SLC5A5 (ENSCCAG00000036426) #23	CCDC124 (ENSCCAG00000003180) #24	KCNN1 (ENSCCAG00000021223) #25	ENSCCAG00000034197 #26	IL12RB1 (ENSCCAG00000001339) #27	MAST3 (ENSCCAG00000037603) #28	PIK3R2 (ENSCCAG00000036359) #29	IFI30 (ENSCCAG00000000030) #30	MPV17L2 (ENSCCAG00000030804) #31	RAB3A (ENSCCAG00000025412) #32	PDE4C (ENSCCAG00000034162) #33	IQCN (ENSCCAG00000021916) #34	JUND (ENSCCAG00000014839) #35	LSM4 (ENSCCAG00000036308) #36	PGPEP1 (ENSCCAG00000038062) #37
Capuchin	MODERN SPECIES	27	TNFAIP6 (ENSCCAG00000022288)	RIF1 (ENSCCAG00000024760)	NEB (ENSCCAG00000026566)	ARL5A (ENSCCAG00000023321)	CACNB4 (ENSCCAG00000036673)	STAM2 (ENSCCAG00000030900)	ENSCCAG00000007786	ENSCCAG00000020790	FMNL2 (ENSCCAG00000028051)	PRPF40A (ENSCCAG00000034856)	ARL6IP6 (ENSCCAG00000024457)	ENSCCAG00000019893	RPRM (ENSCCAG00000006984)	ENSCCAG00000019999	GALNT13 (ENSCCAG00000024645)	ENSCCAG00000025266 #22	KCNJ3 (ENSCCAG00000030138)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	446													ENSANAG00000033602	ENSANAG00000035603	ENSANAG00000019547	ENSANAG00000025961 #22	ENSANAG00000029772	NANOGNB (ENSANAG00000031517)	DPPA3 (ENSANAG00000028453)	GDF3 (ENSANAG00000023971)	APOBEC1 (ENSANAG00000027743)	ENSANAG00000019248	ENSANAG00000028978	ENSANAG00000001909	ENSANAG00000033982	ENSANAG00000030301	ENSANAG00000021598	ENSANAG00000030757	ENSANAG00000028357	ENSANAG00000031265	CD163 (ENSANAG00000029818)
Mas night monkey	MODERN SPECIES	958	NUCKS1 (ENSANAG00000026439)	SLC45A3 (ENSANAG00000024162)	ELK4 (ENSANAG00000026433)	MFSD4A (ENSANAG00000037917)	CDK18 (ENSANAG00000025867)	LEMD1 (ENSANAG00000021706)	KLHDC8A (ENSANAG00000020760)	NUAK2 (ENSANAG00000023561)	TMCC2 (ENSANAG00000021813)	DSTYK (ENSANAG00000026857)	RBBP5 (ENSANAG00000037817)	CNTN2 (ENSANAG00000021524)	NFASC (ENSANAG00000029118)	ENSANAG00000037474	LRRN2 (ENSANAG00000018254)	ENSANAG00000026599 #22	ENSANAG00000019407	ENSANAG00000036891	PIK3C2B (ENSANAG00000019718)	PPP1R15B (ENSANAG00000036947)	PLEKHA6 (ENSANAG00000037119)	GOLT1A (ENSANAG00000026267)	KISS1 (ENSANAG00000037472)	REN (ENSANAG00000034032)	ETNK2 (ENSANAG00000036760)	SOX13 (ENSANAG00000036193)	SNRPE (ENSANAG00000036379)	ENSANAG00000033622	ENSANAG00000034973	ZBED6 (ENSANAG00000017840)	LAX1 (ENSANAG00000034140)
Mas night monkey	MODERN SPECIES	1353	CCDC194 (ENSANAG00000022098) #8	BST2 (ENSANAG00000027867)	MVB12A (ENSANAG00000034548) #9	TMEM221 (ENSANAG00000038451) #10	NXNL1 (ENSANAG00000022891) #11	SLC27A1 (ENSANAG00000029973) #12	PGLS (ENSANAG00000029756) #13	NIBAN3 (ENSANAG00000034531) #14	COLGALT1 (ENSANAG00000023930) #15	UNC13A (ENSANAG00000030873)	MAP1S (ENSANAG00000032114) #17	FCHO1 (ENSANAG00000027781) #18	B3GNT3 (ENSANAG00000005235) #19	INSL3 (ENSANAG00000016622) #20	JAK3 (ENSANAG00000010485) #21	ENSANAG00000037640 #22	SLC5A5 (ENSANAG00000031185) #23	CCDC124 (ENSANAG00000020604) #24	KCNN1 (ENSANAG00000037378) #25	ARRDC2 (ENSANAG00000036755) #26	IL12RB1 (ENSANAG00000020938) #27	MAST3 (ENSANAG00000030335) #28	PIK3R2 (ENSANAG00000001008) #29	IFI30 (ENSANAG00000032341) #30	MPV17L2 (ENSANAG00000008820) #31	RAB3A (ENSANAG00000030989) #32	PDE4C (ENSANAG00000020146) #33	IQCN (ENSANAG00000024831) #34	LSM4 (ENSANAG00000034659) #36	PGPEP1 (ENSANAG00000025508) #37	GDF15 (ENSANAG00000030690)
Strepsirrhini	ANCESTRAL SPECIES	33	ENSGT00390000006166 #7	ENSGT00850000133633 #8	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Bushbaby	MODERN SPECIES	220	PLVAP (ENSOGAG00000032556) #7	MVB12A (ENSOGAG00000030761) #9	ENSOGAG00000027569	TMEM221 (ENSOGAG00000003706) #10	NXNL1 (ENSOGAG00000031624) #11	SLC27A1 (ENSOGAG00000000089) #12	PGLS (ENSOGAG00000000091) #13	NIBAN3 (ENSOGAG00000000092) #14	COLGALT1 (ENSOGAG00000000093) #15	UNC13A (ENSOGAG00000027473)	MAP1S (ENSOGAG00000025035) #17	FCHO1 (ENSOGAG00000006490) #18	B3GNT3 (ENSOGAG00000001205) #19	ENSOGAG00000029158	JAK3 (ENSOGAG00000009777) #21	RPL18A (ENSOGAG00000031828) #22	SLC5A5 (ENSOGAG00000012290) #23	CCDC124 (ENSOGAG00000012293) #24	KCNN1 (ENSOGAG00000012295) #25	ARRDC2 (ENSOGAG00000001138) #26	IL12RB1 (ENSOGAG00000001139) #27	MAST3 (ENSOGAG00000001141) #28	PIK3R2 (ENSOGAG00000001143) #29	IFI30 (ENSOGAG00000024708) #30	RAB3A (ENSOGAG00000010208) #32	PDE4C (ENSOGAG00000014301) #33	IQCN (ENSOGAG00000033156) #34	JUND (ENSOGAG00000025346) #35	LSM4 (ENSOGAG00000027992) #36	PGPEP1 (ENSOGAG00000014833) #37	ENSOGAG00000033959
Lemuriformes	ANCESTRAL SPECIES	45	ENSGT00390000006166 #7	ENSGT00850000133633 #8	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Lemuriformes_a	ANCESTRAL SPECIES	65	ENSGT00390000006166 #7	ENSGT00850000133633 #8	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000154929.B #16	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Coquerels sifaka	MODERN SPECIES	589	PLVAP (ENSPCOG00000025460) #7	CCDC194 (ENSPCOG00000017156) #8	MVB12A (ENSPCOG00000017574) #9	TMEM221 (ENSPCOG00000028289) #10	NXNL1 (ENSPCOG00000018562) #11	SLC27A1 (ENSPCOG00000015072) #12	PGLS (ENSPCOG00000028323) #13	NIBAN3 (ENSPCOG00000015603) #14	COLGALT1 (ENSPCOG00000020663) #15	ENSPCOG00000013636 #16	MAP1S (ENSPCOG00000017046) #17	FCHO1 (ENSPCOG00000023365) #18	B3GNT3 (ENSPCOG00000023429) #19	INSL3 (ENSPCOG00000027154) #20	JAK3 (ENSPCOG00000012079) #21	RPL18A (ENSPCOG00000024822) #22	SLC5A5 (ENSPCOG00000003964) #23	CCDC124 (ENSPCOG00000019143) #24	KCNN1 (ENSPCOG00000012840) #25	ARRDC2 (ENSPCOG00000013771) #26	IL12RB1 (ENSPCOG00000014526) #27	MAST3 (ENSPCOG00000013135) #28	PIK3R2 (ENSPCOG00000021064) #29	IFI30 (ENSPCOG00000015786) #30	MPV17L2 (ENSPCOG00000003636) #31	RAB3A (ENSPCOG00000013539) #32	PDE4C (ENSPCOG00000014383) #33	IQCN (ENSPCOG00000025626) #34	JUND (ENSPCOG00000014234) #35	LSM4 (ENSPCOG00000019837) #36	PGPEP1 (ENSPCOG00000022097) #37
Mouse lemur	MODERN SPECIES	16	NANOS3 (ENSMICG00000030950)	ZSWIM4 (ENSMICG00000037649)	ENSMICG00000033146	CCDC194 (ENSMICG00000045403) #8	MVB12A (ENSMICG00000043858) #9	SLC27A1 (ENSMICG00000003391) #12	PGLS (ENSMICG00000037868) #13	NIBAN3 (ENSMICG00000045861) #14	COLGALT1 (ENSMICG00000037557) #15	UNC13A (ENSMICG00000036952)	MAP1S (ENSMICG00000041940) #17	FCHO1 (ENSMICG00000028462) #18	B3GNT3 (ENSMICG00000031110) #19	ENSMICG00000045535	JAK3 (ENSMICG00000034333) #21	RPL18A (ENSMICG00000029204) #22	SLC5A5 (ENSMICG00000031990) #23	CCDC124 (ENSMICG00000008707) #24	KCNN1 (ENSMICG00000000005) #25	ARRDC2 (ENSMICG00000048039) #26	MAST3 (ENSMICG00000034292) #28	PIK3R2 (ENSMICG00000028339) #29	MPV17L2 (ENSMICG00000044224) #31	RAB3A (ENSMICG00000047037) #32	PDE4C (ENSMICG00000037741) #33	IQCN (ENSMICG00000044860) #34	ENSMICG00000032841 #35	LSM4 (ENSMICG00000000222) #36	ENSMICG00000043044	ENSMICG00000034758	ISYNA1 (ENSMICG00000017023)
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000174538	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Blue whale	MODERN SPECIES		SPTA1 (ENSBMSG00010003731)	ENSBMSG00010003703	ENSBMSG00010003699	OR10K2 (ENSBMSG00010003694)	OR10R2 (ENSBMSG00010003685)	ENSBMSG00010003679	CD1E (ENSBMSG00010003526)	ENSBMSG00010003495	ENSBMSG00010003489	ENSBMSG00010003480	ENSBMSG00010003471	KIRREL1 (ENSBMSG00010003396)	ENSBMSG00010003372	CD5L (ENSBMSG00010003369)	FCRL1 (ENSBMSG00010003353)	ENSBMSG00010003344 #22	FCRL3 (ENSBMSG00010003327)	FCRL4 (ENSBMSG00010003313)	ENSBMSG00010003295	ENSBMSG00010003284	ENSBMSG00010003274	ETV3 (ENSBMSG00010003261)	ETV3L (ENSBMSG00010003249)	ARHGEF11 (ENSBMSG00010001143)	LRRC71 (ENSBMSG00010000517)	PEAR1 (ENSBMSG00010000422)	NTRK1 (ENSBMSG00010000221)	INSRR (ENSBMSG00010000153)	SH2D2A (ENSBMSG00010000123)	PRCC (ENSBMSG00010000097)	HDGF (ENSBMSG00010000074)
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT01010000228911	ENSGT00940000154929.B #16	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173.a.a #36
Sperm whale	MODERN SPECIES	17	TWF1 (ENSPCTG00005016400)	IRAK4 (ENSPCTG00005016513)	PUS7L (ENSPCTG00005016614)	ADAMTS20 (ENSPCTG00005016684)	PRICKLE1 (ENSPCTG00005016771)	PPHLN1 (ENSPCTG00005016859)	ZCRB1 (ENSPCTG00005017161)	YAF2 (ENSPCTG00005017243)	GXYLT1 (ENSPCTG00005017447)	ENSPCTG00005017586	PDZRN4 (ENSPCTG00005017632)	CNTN1 (ENSPCTG00005017912)	LRRK2 (ENSPCTG00005018602)	ENSPCTG00005018859	SLC2A13 (ENSPCTG00005018911)	ENSPCTG00005019220 #22	ABCD2 (ENSPCTG00005019234)	KIF21A (ENSPCTG00005019438)	CPNE8 (ENSPCTG00005000264)
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT01010000228911	ENSGT00940000154929.B #16	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173.a.a #36	ENSGT00610000086173.b #36
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT01010000228911	ENSGT00940000154929.B #16	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173.b #36	ENSGT00390000015368.a.a #37
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	1	PUS7L (ENSPSNG00000019328)	ENSPSNG00000019362	ADAMTS20 (ENSPSNG00000019420)	PRICKLE1 (ENSPSNG00000019658)	PPHLN1 (ENSPSNG00000019732)	ZCRB1 (ENSPSNG00000019891)	YAF2 (ENSPSNG00000019968)	GXYLT1 (ENSPSNG00000020053)	ENSPSNG00000020133	PDZRN4 (ENSPSNG00000020173)	CNTN1 (ENSPSNG00000020359)	ENSPSNG00000020747	LRRK2 (ENSPSNG00000020867)	SLC2A13 (ENSPSNG00000020932)	C12orf40 (ENSPSNG00000020991)	ENSPSNG00000021130 #22	ABCD2 (ENSPSNG00000021149)	KIF21A (ENSPSNG00000021250)	ENSPSNG00000021336	ENSPSNG00000021353	CPNE8 (ENSPSNG00000004195)	ENSPSNG00000004229	SYT10 (ENSPSNG00000004264)	PKP2 (ENSPSNG00000004294)	ENSPSNG00000004323	YARS2 (ENSPSNG00000004339)	DNM1L (ENSPSNG00000004469)	ENSPSNG00000004600	FGD4 (ENSPSNG00000004764)	ENSPSNG00000004851	ENSPSNG00000004862
Vaquita	MODERN SPECIES	14	ENSPSNG00000000483	ENSPSNG00000000468	MVB12A (ENSPSNG00000000448) #9	TMEM221 (ENSPSNG00000000407) #10	NXNL1 (ENSPSNG00000000381) #11	SLC27A1 (ENSPSNG00000000343) #12	PGLS (ENSPSNG00000000313) #13	NIBAN3 (ENSPSNG00000000196) #14	COLGALT1 (ENSPSNG00000005159) #15	UNC13A (ENSPSNG00000004521)	ENSPSNG00000004125	MAP1S (ENSPSNG00000004112) #17	FCHO1 (ENSPSNG00000004056) #18	INSL3 (ENSPSNG00000003971) #20	JAK3 (ENSPSNG00000003933) #21	RPL18A (ENSPSNG00000003841) #22	SLC5A5 (ENSPSNG00000003806) #23	CCDC124 (ENSPSNG00000003776) #24	KCNN1 (ENSPSNG00000003747) #25	ARRDC2 (ENSPSNG00000003708) #26	IL12RB1 (ENSPSNG00000003645) #27	MAST3 (ENSPSNG00000003577) #28	PIK3R2 (ENSPSNG00000003482) #29	ENSPSNG00000003439 #30	MPV17L2 (ENSPSNG00000003411) #31	RAB3A (ENSPSNG00000003382) #32	PDE4C (ENSPSNG00000003220) #33	ENSPSNG00000003167 #34	JUND (ENSPSNG00000003153) #35	ENSPSNG00000003131 #36	PGPEP1 (ENSPSNG00000003067) #37
Pecora	ANCESTRAL SPECIES		ENSGT00390000013782.a	ENSGT00390000013782.b	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000017224	ENSCHYG00000017192	ENSCHYG00000017153	ENSCHYG00000017136	ENSCHYG00000016980	NIFK (ENSCHYG00000016920)	ENSCHYG00000016875	CLASP1 (ENSCHYG00000015532)	TFCP2L1 (ENSCHYG00000015196)	ENSCHYG00000023259	ENSCHYG00000023235	GLI2 (ENSCHYG00000023139)	INHBB (ENSCHYG00000023113)	RALB (ENSCHYG00000023064)	TMEM185B (ENSCHYG00000023047)	ENSCHYG00000023024 #22	EPB41L5 (ENSCHYG00000022604)	ENSCHYG00000022507	PTPN4 (ENSCHYG00000022126)	TMEM177 (ENSCHYG00000022080)	CFAP221 (ENSCHYG00000022009)	SCTR (ENSCHYG00000021920)	ENSCHYG00000021886	ENSCHYG00000021738	C2orf76 (ENSCHYG00000021650)	STEAP3 (ENSCHYG00000021528)	ENSCHYG00000021492	C1QL2 (ENSCHYG00000021464)	MARCO (ENSCHYG00000021328)	EN1 (ENSCHYG00000021284)	INSIG2 (ENSCHYG00000021229)
Percora_a	ANCESTRAL SPECIES		ENSGT00390000013782.a	ENSGT00390000013782.b	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Bovidae	ANCESTRAL SPECIES		ENSGT00390000013782.a	ENSGT00390000013782.b	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Caprinae	ANCESTRAL SPECIES	32	ENSGT00390000013782.a	ENSGT00390000013782.b	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT00390000015368.a.a #37
Rambouillet Sheep	MODERN SPECIES	21	Bst-2B (ENSOARG00020010913)	ENSOARG00020010745	MVB12A (ENSOARG00020010659) #9	TMEM221 (ENSOARG00020010608) #10	NXNL1 (ENSOARG00020010546) #11	SLC27A1 (ENSOARG00020010283) #12	PGLS (ENSOARG00020010182) #13	NIBAN3 (ENSOARG00020009944) #14	COLGALT1 (ENSOARG00020009873) #15	UNC13A (ENSOARG00020006998)	MAP1S (ENSOARG00020006765) #17	FCHO1 (ENSOARG00020006416) #18	B3GNT3 (ENSOARG00020006386) #19	INSL3 (ENSOARG00020006354) #20	JAK3 (ENSOARG00020006264) #21	RPL18A (ENSOARG00020006201) #22	SLC5A5 (ENSOARG00020006146) #23	CCDC124 (ENSOARG00020006131) #24	KCNN1 (ENSOARG00020006098) #25	ARRDC2 (ENSOARG00020006027) #26	IL12RB1 (ENSOARG00020005715) #27	MAST3 (ENSOARG00020005583) #28	PIK3R2 (ENSOARG00020005480) #29	IFI30 (ENSOARG00020005418) #30	MPV17L2 (ENSOARG00020005392) #31	RAB3A (ENSOARG00020005307) #32	PDE4C (ENSOARG00020004959) #33	ENSOARG00020004884 #34	JUND (ENSOARG00020004870) #35	LSM4 (ENSOARG00020004808) #36	PGPEP1 (ENSOARG00020004669) #37
Bovinae	ANCESTRAL SPECIES	34	ENSGT00390000013782.a	ENSGT00390000013782.b.a	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
American bison	MODERN SPECIES	3138	CCDC194 (ENSBBBG00000011597) #8	ENSBBBG00000007591	MVB12A (ENSBBBG00000011586) #9	TMEM221 (ENSBBBG00000011563) #10	NXNL1 (ENSBBBG00000002120) #11	SLC27A1 (ENSBBBG00000011543) #12	PGLS (ENSBBBG00000011494) #13	NIBAN3 (ENSBBBG00000011462) #14	COLGALT1 (ENSBBBG00000011416) #15	UNC13A (ENSBBBG00000011392)	MAP1S (ENSBBBG00000011114) #17	FCHO1 (ENSBBBG00000007395) #18	B3GNT3 (ENSBBBG00000011022) #19	INSL3 (ENSBBBG00000008094) #20	JAK3 (ENSBBBG00000007067) #21	RPL18A (ENSBBBG00000010950) #22	SLC5A5 (ENSBBBG00000010926) #23	CCDC124 (ENSBBBG00000010914) #24	KCNN1 (ENSBBBG00000010901) #25	ENSBBBG00000010896 #26	IL12RB1 (ENSBBBG00000010869) #27	MAST3 (ENSBBBG00000001901) #28	PIK3R2 (ENSBBBG00000010787) #29	IFI30 (ENSBBBG00000007643) #30	ENSBBBG00000010750 #31	RAB3A (ENSBBBG00000010744) #32	PDE4C (ENSBBBG00000001877) #33	ENSBBBG00000010662	ENSBBBG00000010659 #34
Bos	ANCESTRAL SPECIES	34	ENSGT00390000013782.b.b	ENSGT00390000013782.b.a.a	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Bos_b	ANCESTRAL SPECIES	36	ENSGT00390000013782.b.b	ENSGT00390000013782.b.a.a	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Hybrid Bos Indicus	MODERN SPECIES	26	CCDC194 (ENSBIXG00005015250) #8	ENSBIXG00005015223	MVB12A (ENSBIXG00005015169) #9	TMEM221 (ENSBIXG00005015132) #10	NXNL1 (ENSBIXG00005015113) #11	SLC27A1 (ENSBIXG00005015078) #12	PGLS (ENSBIXG00005015006) #13	NIBAN3 (ENSBIXG00005014979) #14	COLGALT1 (ENSBIXG00005014871) #15	UNC13A (ENSBIXG00005006743)	MAP1S (ENSBIXG00005014741) #17	FCHO1 (ENSBIXG00005014715) #18	B3GNT3 (ENSBIXG00005014673) #19	INSL3 (ENSBIXG00005002051) #20	JAK3 (ENSBIXG00005014624) #21	RPL18A (ENSBIXG00005014580) #22	SLC5A5 (ENSBIXG00005007535) #23	CCDC124 (ENSBIXG00005001974) #24	KCNN1 (ENSBIXG00005014447) #25	ARRDC2 (ENSBIXG00005001918) #26	IL12RB1 (ENSBIXG00005014340) #27	MAST3 (ENSBIXG00005001845) #28	PIK3R2 (ENSBIXG00005013908) #29	IFI30 (ENSBIXG00005013854) #30	MPV17L2 (ENSBIXG00005013844) #31	RAB3A (ENSBIXG00005013822) #32	PDE4C (ENSBIXG00005007314) #33	ENSBIXG00005013722	JUND (ENSBIXG00005013693) #35	LSM4 (ENSBIXG00005013676) #36	PGPEP1 (ENSBIXG00005001660) #37
Cow	DUPLICATION
Cow	MODERN SPECIES	11	MECR (ENSBTAG00000017253)	SRSF4 (ENSBTAG00000013309)	TMEM200B (ENSBTAG00000047524)	EPB41 (ENSBTAG00000006667)	OPRD1 (ENSBTAG00000003202)	YTHDF2 (ENSBTAG00000015771)	GMEB1 (ENSBTAG00000001160)	TAF12 (ENSBTAG00000026660)	RAB42 (ENSBTAG00000021525)	ENSBTAG00000052614	ENSBTAG00000048228	TRNAU1AP (ENSBTAG00000010393)	RCC1 (ENSBTAG00000003788)	PHACTR4 (ENSBTAG00000002727)	ENSBTAG00000003676	ENSBTAG00000040210 #22	MED18 (ENSBTAG00000002678)	SESN2 (ENSBTAG00000002363)	ATP5IF1 (ENSBTAG00000006342)	DNAJC8 (ENSBTAG00000018385)	PTAFR (ENSBTAG00000027051)	EYA3 (ENSBTAG00000043989)	XKR8 (ENSBTAG00000008800)	SMPDL3B (ENSBTAG00000012997)	RPA2 (ENSBTAG00000006225)	THEMIS2 (ENSBTAG00000006223)	PPP1R8 (ENSBTAG00000003866)	STX12 (ENSBTAG00000001192)	FAM76A (ENSBTAG00000019614)	IFI6 (ENSBTAG00000007554)	FGR (ENSBTAG00000011784)
Cow	MODERN SPECIES	26	ENSBTAG00000045588	MVB12A (ENSBTAG00000003914) #9	TMEM221 (ENSBTAG00000025767) #10	NXNL1 (ENSBTAG00000016773) #11	SLC27A1 (ENSBTAG00000016775) #12	PGLS (ENSBTAG00000016783) #13	NIBAN3 (ENSBTAG00000018946) #14	COLGALT1 (ENSBTAG00000012678) #15	UNC13A (ENSBTAG00000012682)	MAP1S (ENSBTAG00000020709) #17	FCHO1 (ENSBTAG00000002136) #18	B3GNT3 (ENSBTAG00000046750) #19	ENSBTAG00000050184	INSL3 (ENSBTAG00000025775) #20	JAK3 (ENSBTAG00000020904) #21	RPL18A (ENSBTAG00000015831) #22	SLC5A5 (ENSBTAG00000015830) #23	CCDC124 (ENSBTAG00000004604) #24	KCNN1 (ENSBTAG00000008626) #25	ARRDC2 (ENSBTAG00000039335) #26	IL12RB1 (ENSBTAG00000011481) #27	MAST3 (ENSBTAG00000002347) #28	PIK3R2 (ENSBTAG00000002350) #29	IFI30 (ENSBTAG00000018349) #30	MPV17L2 (ENSBTAG00000025788) #31	RAB3A (ENSBTAG00000010635) #32	PDE4C (ENSBTAG00000010652) #33	CIST1 (ENSBTAG00000033886)	ENSBTAG00000054700 #34	JUND (ENSBTAG00000052791) #35	LSM4 (ENSBTAG00000008578) #36
Bos_a	ANCESTRAL SPECIES	29	ENSGT00390000013782.b.b	ENSGT00390000013782.b.a.a	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994.a.a #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000162806 #35	ENSGT00610000086173 #36	ENSGT01100000263504.b.t
Domestic yak	MODERN SPECIES	27	ENSBGRG00000025144	ENSBGRG00000025149	ENSBGRG00000025154	MVB12A (ENSBGRG00000025173) #9	TMEM221 (ENSBGRG00000025218) #10	NXNL1 (ENSBGRG00000025231) #11	SLC27A1 (ENSBGRG00000025244) #12	PGLS (ENSBGRG00000025278) #13	COLGALT1 (ENSBGRG00000025384) #15	UNC13A (ENSBGRG00000025475)	MAP1S (ENSBGRG00000025913) #17	FCHO1 (ENSBGRG00000025931) #18	B3GNT3 (ENSBGRG00000025987) #19	INSL3 (ENSBGRG00000025999) #20	JAK3 (ENSBGRG00000026011) #21	RPL18A (ENSBGRG00000026043) #22	SLC5A5 (ENSBGRG00000026060) #23	CCDC124 (ENSBGRG00000026081) #24	KCNN1 (ENSBGRG00000026088) #25	ARRDC2 (ENSBGRG00000026092) #26	IL12RB1 (ENSBGRG00000026103) #27	MAST3 (ENSBGRG00000026128) #28	PIK3R2 (ENSBGRG00000026150) #29	ENSBGRG00000026165 #30	MPV17L2 (ENSBGRG00000026182) #31	RAB3A (ENSBGRG00000026189) #32	PDE4C (ENSBGRG00000026196) #33	ENSBGRG00000026213	JUND (ENSBGRG00000026238) #35	LSM4 (ENSBGRG00000026242) #36	ENSBGRG00000026247
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	762												RAB42 (ENSBMUG00000018007)	RCC1 (ENSBMUG00000017936)	PHACTR4 (ENSBMUG00000017790)	ENSBMUG00000017722	ENSBMUG00000017712 #22	MED18 (ENSBMUG00000017697)	SESN2 (ENSBMUG00000017686)	ATP5IF1 (ENSBMUG00000017659)	DNAJC8 (ENSBMUG00000017600)	PTAFR (ENSBMUG00000017560)	ENSBMUG00000017537	EYA3 (ENSBMUG00000017528)	XKR8 (ENSBMUG00000017423)	SMPDL3B (ENSBMUG00000017413)	ENSBMUG00000017390	THEMIS2 (ENSBMUG00000017367)	PPP1R8 (ENSBMUG00000017340)	STX12 (ENSBMUG00000017327)	FAM76A (ENSBMUG00000017312)	IFI6 (ENSBMUG00000017279)
Wild yak	MODERN SPECIES	944		ENSBMUG00000024817	MVB12A (ENSBMUG00000024828) #9	TMEM221 (ENSBMUG00000024834) #10	NXNL1 (ENSBMUG00000024840) #11	SLC27A1 (ENSBMUG00000024849) #12	PGLS (ENSBMUG00000024858) #13	NIBAN3 (ENSBMUG00000024895) #14	COLGALT1 (ENSBMUG00000024919) #15	UNC13A (ENSBMUG00000025022)	ENSBMUG00000025043 #17	FCHO1 (ENSBMUG00000025080) #18	B3GNT3 (ENSBMUG00000025094) #19	INSL3 (ENSBMUG00000025098) #20	JAK3 (ENSBMUG00000025470) #21	RPL18A (ENSBMUG00000025608) #22	SLC5A5 (ENSBMUG00000025624) #23	CCDC124 (ENSBMUG00000025643) #24	KCNN1 (ENSBMUG00000025662) #25	ENSBMUG00000025675 #26	IL12RB1 (ENSBMUG00000025709) #27	MAST3 (ENSBMUG00000025720) #28	PIK3R2 (ENSBMUG00000025742) #29	IFI30 (ENSBMUG00000025752) #30
Wild yak	MODERN SPECIES	605					LIN52 (ENSBMUG00000008498)	ALDH6A1 (ENSBMUG00000008513)	BBOF1 (ENSBMUG00000008532)	ENTPD5 (ENSBMUG00000008565)	COQ6 (ENSBMUG00000008582)	FAM161B (ENSBMUG00000008593)	ZNF410 (ENSBMUG00000008634)	PTGR2 (ENSBMUG00000008747)	MIDEAS (ENSBMUG00000008801)	PNMA1 (ENSBMUG00000008814)	DNAL1 (ENSBMUG00000008848)	ENSBMUG00000008866 #22	ENSBMUG00000008872	ENSBMUG00000008879	ENSBMUG00000008887	ENSBMUG00000008907	ENSBMUG00000008918	ENSBMUG00000008951	RIOX1 (ENSBMUG00000008961)	NUMB (ENSBMUG00000009175)	PAPLN (ENSBMUG00000009643)	PSEN1 (ENSBMUG00000009750)	RBM25 (ENSBMUG00000009795)	ZFYVE1 (ENSBMUG00000009820)	ENSBMUG00000009848	DPF3 (ENSBMUG00000009879)	ENSBMUG00000009890
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Felidae	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
leopard	MODERN SPECIES	18	KCNIP1 (ENSPPRG00000024956)	LCP2 (ENSPPRG00000024344)	C5orf58 (ENSPPRG00000024140)	FOXI1 (ENSPPRG00000024120)	INSYN2B (ENSPPRG00000024086)	DOCK2 (ENSPPRG00000002292)	SPDL1 (ENSPPRG00000003639)	SLIT3 (ENSPPRG00000008973)	PANK3 (ENSPPRG00000009464)	FBLL1 (ENSPPRG00000020963)	RARS1 (ENSPPRG00000009833)	WWC1 (ENSPPRG00000021000)	ENSPPRG00000022087	TENM2 (ENSPPRG00000023112)	ENSPPRG00000000296	ENSPPRG00000000591 #22	MAT2B (ENSPPRG00000001422)	HMMR (ENSPPRG00000003396)	NUDCD2 (ENSPPRG00000003513)	CCNG1 (ENSPPRG00000004940)	ENSPPRG00000021299	GABRG2 (ENSPPRG00000009334)	GABRA1 (ENSPPRG00000010417)	GABRA6 (ENSPPRG00000010740)	GABRB2 (ENSPPRG00000014982)
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Canidae	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Red fox	DUPLICATION
Red fox	MODERN SPECIES	252							HEPH (ENSVVUG00000022741)	ENSVVUG00000022739	VSIG4 (ENSVVUG00000022732)	ENSVVUG00000022727	MSN (ENSVVUG00000022717)	ENSVVUG00000022713	ENSVVUG00000022709	LAS1L (ENSVVUG00000022702)	ENSVVUG00000022700	ENSVVUG00000022698 #22	ZC3H12B (ENSVVUG00000022686)	ZC4H2 (ENSVVUG00000022682)
Red fox	MODERN SPECIES	9													TMCC3 (ENSVVUG00000012324)	CEP83 (ENSVVUG00000012315)	PLXNC1 (ENSVVUG00000011903)	ENSVVUG00000011872 #22	CRADD (ENSVVUG00000011866)	ENSVVUG00000011846	MRPL42 (ENSVVUG00000011842)	ENSVVUG00000011840	NUDT4 (ENSVVUG00000011834)	EEA1 (ENSVVUG00000011772)	ENSVVUG00000011745	BTG1 (ENSVVUG00000011741)	DCN (ENSVVUG00000011722)	LUM (ENSVVUG00000011715)	KERA (ENSVVUG00000011712)	EPYC (ENSVVUG00000011701)	CCER1 (ENSVVUG00000011693)	ATP2B1 (ENSVVUG00000011650)	ENSVVUG00000011636
Red fox	MODERN SPECIES	212	PEX11G (ENSVVUG00000028238)	TEX45 (ENSVVUG00000028234)	ZNF358 (ENSVVUG00000028228)	MCOLN1 (ENSVVUG00000028132)	PNPLA6 (ENSVVUG00000027123)	CAMSAP3 (ENSVVUG00000027095)	XAB2 (ENSVVUG00000027092)	PET100 (ENSVVUG00000027090)	PCP2 (ENSVVUG00000027086)	STXBP2 (ENSVVUG00000027084)	RETN (ENSVVUG00000027083)	ENSVVUG00000027082	ENSVVUG00000027080	ENSVVUG00000027079	CLEC4G (ENSVVUG00000027070)	ENSVVUG00000027068 #22	ENSVVUG00000027066	EVI5L (ENSVVUG00000027064)	PRR36 (ENSVVUG00000027061)	LRRC8E (ENSVVUG00000027058)	MAP2K7 (ENSVVUG00000027000)	SNAPC2 (ENSVVUG00000026998)	CTXN1 (ENSVVUG00000026995)	TIMM44 (ENSVVUG00000026990)	ENSVVUG00000026988	ENSVVUG00000026986	FBN3 (ENSVVUG00000025403)	CERS4 (ENSVVUG00000025222)	ENSVVUG00000025221	NDUFA7 (ENSVVUG00000025219)	RPS28 (ENSVVUG00000025217)
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00390000015797.c.b #22
Ursus	ANCESTRAL SPECIES	46	ENSGT00390000013853	ENSGT00390000004263.a	ENSGT00950000182995.e.b	ENSGT00940000159405	ENSGT00440000038909	ENSGT00940000156357.e	ENSGT00390000013305.a.b	ENSGT00940000158862	ENSGT00940000155788.e	ENSGT00940000155788.f	ENSGT00390000003465.b.b	ENSGT01090000260040.a.a.a	ENSGT00940000153773.a.b	ENSGT00950000183212.A	ENSGT00940000157094	ENSGT00390000015797.c.b #22	ENSGT00940000158703	ENSGT00940000154697.a.b	ENSGT00940000154697.b	ENSGT00390000008918.a.b	ENSGT00530000063692.a	ENSGT00500000044936	ENSGT00940000154612.m.b.c	ENSGT00950000186261	ENSGT00940000162275	ENSGT00940000154684	ENSGT00940000160530	ENSGT00940000154984.C	ENSGT00940000160344	ENSGT00940000159321	ENSGT00390000017478
American black bear	MODERN SPECIES	2895																ENSUAMG00000021240 #22	RNF19A (ENSUAMG00000021238)	ENSUAMG00000021233	ENSUAMG00000021230
Polar bear	MODERN SPECIES	157	ATP6V1C1 (ENSUMAG00000019776)	AZIN1 (ENSUMAG00000019764)	KLF10 (ENSUMAG00000019751)	ODF1 (ENSUMAG00000019739)	UBR5 (ENSUMAG00000017960)	RRM2B (ENSUMAG00000017611)	NCALD (ENSUMAG00000017598)	ENSUMAG00000017593	ENSUMAG00000017592	ENSUMAG00000017587	ZNF706 (ENSUMAG00000017579)	ENSUMAG00000017568	PABPC1 (ENSUMAG00000017554)	SNX31 (ENSUMAG00000017541)	ANKRD46 (ENSUMAG00000017536)	ENSUMAG00000017530 #22	RNF19A (ENSUMAG00000017523)	ENSUMAG00000017512	POLR2K (ENSUMAG00000017508)	FBXO43 (ENSUMAG00000017505)	ENSUMAG00000017503	RGS22 (ENSUMAG00000017490)	COX6C (ENSUMAG00000017482)	ENSUMAG00000017478	ENSUMAG00000017470	VPS13B (ENSUMAG00000017073)	OSR2 (ENSUMAG00000016994)	STK3 (ENSUMAG00000016985)	KCNS2 (ENSUMAG00000016978)	NIPAL2 (ENSUMAG00000016967)	POP1 (ENSUMAG00000016952)
Giant Panda	MODERN SPECIES	1265																ENSAMEG00000025738 #22
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Chiroptera	ANCESTRAL SPECIES	44	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Microchiroptera	ANCESTRAL SPECIES	43	ENSGT00850000133633 #8	ENSGT00390000013782	ENSGT00940000160542 #9	ENSGT00390000001907 #10	ENSGT00940000161246 #11	ENSGT00940000159323 #12	ENSGT00550000075110 #13	ENSGT00940000154149.b.b #14	ENSGT01030000234558.D.b #15	ENSGT00940000161905	ENSGT00940000160221 #17	ENSGT00940000160489 #18	ENSGT00940000159134 #19	ENSGT00940000163613 #20	ENSGT00940000161827 #21	ENSGT00390000015797.c.b #22	ENSGT00940000159489 #23	ENSGT00390000012482 #24	ENSGT00950000182904.a.b.b #25	ENSGT00940000159994 #26	ENSGT00390000012431 #27	ENSGT00940000157166 #28	ENSGT00940000157050 #29	ENSGT00390000010450 #30	ENSGT00940000160620 #31	ENSGT00940000158959.b #32	ENSGT00940000162285 #33	ENSGT01030000234883	ENSGT00940000156018.A #34	ENSGT00940000162806 #35	ENSGT00610000086173 #36
Greater horseshoe bat	MODERN SPECIES	9	CCDC194 (ENSRFEG00010016797) #8	ENSRFEG00010016869	MVB12A (ENSRFEG00010016936) #9	TMEM221 (ENSRFEG00010017033) #10	NXNL1 (ENSRFEG00010017098) #11	SLC27A1 (ENSRFEG00010017146) #12	PGLS (ENSRFEG00010017226) #13	NIBAN3 (ENSRFEG00010017286) #14	COLGALT1 (ENSRFEG00010017748) #15	UNC13A (ENSRFEG00010017824)	MAP1S (ENSRFEG00010018025) #17	FCHO1 (ENSRFEG00010018082) #18	B3GNT3 (ENSRFEG00010018164) #19	INSL3 (ENSRFEG00010018191) #20	JAK3 (ENSRFEG00010018227) #21	RPL18A (ENSRFEG00010018283) #22	SLC5A5 (ENSRFEG00010018368) #23	CCDC124 (ENSRFEG00010018511) #24	KCNN1 (ENSRFEG00010018547) #25	ARRDC2 (ENSRFEG00010018589) #26	IL12RB1 (ENSRFEG00010018741) #27	MAST3 (ENSRFEG00010019088) #28	PIK3R2 (ENSRFEG00010019200) #29	IFI30 (ENSRFEG00010019241) #30	MPV17L2 (ENSRFEG00010019303) #31	RAB3A (ENSRFEG00010019319) #32	PDE4C (ENSRFEG00010019392) #33	ENSRFEG00010019539	ENSRFEG00010019579 #34	JUND (ENSRFEG00010019678) #35	LSM4 (ENSRFEG00010019692) #36
Microbat	MODERN SPECIES	1868																RPL18A (ENSMLUG00000006701) #22	SLC5A5 (ENSMLUG00000016564) #23	ENSMLUG00000027236	CCDC124 (ENSMLUG00000007894) #24	KCNN1 (ENSMLUG00000007908) #25