Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Glires	ANCESTRAL SPECIES	8	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Hystricomorpha	ANCESTRAL SPECIES	69										ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000000816 #7	ENSHGLG00000039844 #8	ENSHGLG00000000948 #9	FNIP2 (ENSHGLG00000001014) #10	C4orf45 (ENSHGLG00000001205) #11	ENSHGLG00000001470 #12	ENSHGLG00000002047 #13	ENSHGLG00000007247 #14	ENSHGLG00000042019 #15	ENSHGLG00000026449 #16	ENSHGLG00000050368 #17	ENSHGLG00000003164 #18	LRBA (ENSHGLG00000000609) #19	ENSHGLG00000050059 #20	MAB21L2 (ENSHGLG00000036891) #21	RPS3A (ENSHGLG00000000392) #22	SH3D19 (ENSHGLG00000003213) #23	ENSHGLG00000050936 #24	PRSS48 (ENSHGLG00000033152) #25	FHIP1A (ENSHGLG00000000533) #26	GATB (ENSHGLG00000001316) #27	ENSHGLG00000032169 #28	ENSHGLG00000046788 #29	FBXW7 (ENSHGLG00000003387) #30	TMEM154 (ENSHGLG00000049888) #31	TIGD4 (ENSHGLG00000040305) #32	ARFIP1 (ENSHGLG00000033720) #33	FHDC1 (ENSHGLG00000001200) #34	ENSHGLG00000001732 #35	TRIM2 (ENSHGLG00000003722) #36	ENSHGLG00000000557 #37
Naked mole-rat female	MODERN SPECIES	1	PRKDC (ENSHGLG00000013287)	MCM4 (ENSHGLG00000018964)	UBE2V2 (ENSHGLG00000038834)	ENSHGLG00000034089	ENSHGLG00000034668	CLXN (ENSHGLG00000010454)	ENSHGLG00000009439	PPDPFL (ENSHGLG00000032230)	ENSHGLG00000050331	SNTG1 (ENSHGLG00000005037)	ENSHGLG00000044626	ENSHGLG00000048304	ENSHGLG00000045690	PCMTD1 (ENSHGLG00000045944)	ENSHGLG00000014452	ENSHGLG00000016233 ##22	ALKAL1 (ENSHGLG00000038780)	RB1CC1 (ENSHGLG00000018518)	ENSHGLG00000013146	NPBWR1 (ENSHGLG00000021373)	ENSHGLG00000015610	ENSHGLG00000003564	ENSHGLG00000046007	Oprk1 (ENSHGLG00000038296)	ATP6V1H (ENSHGLG00000018810)	ENSHGLG00000050091	ENSHGLG00000045461	ENSHGLG00000043019	TCEA1 (ENSHGLG00000036590)	ENSHGLG00000015507	MRPL15 (ENSHGLG00000038800)
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000162501	ENSGT00510000047351.b	ENSGT00940000156801	ENSGT00940000158403	ENSGT00940000157587	ENSGT00390000016264	ENSGT00390000017043	ENSGT00940000156171	ENSGT00940000157878	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Guinea pig	MODERN SPECIES	7	FREM3 (ENSCPOG00000038428)	LRAT (ENSCPOG00000034177)	GAB1 (ENSCPOG00000031770)	USP38 (ENSCPOG00000008971)	INPP4B (ENSCPOG00000026234)	IL15 (ENSCPOG00000008232)	ZNF330 (ENSCPOG00000011875)	RNF150 (ENSCPOG00000004096)	TBC1D9 (ENSCPOG00000007373)	ARHGAP10 (ENSCPOG00000007759)	NR3C2 (ENSCPOG00000007770)	IQCM (ENSCPOG00000022670) #16	DCLK2 (ENSCPOG00000008193) #18	LRBA (ENSCPOG00000008202) #19	MAB21L2 (ENSCPOG00000034419) #21	RPS3A (ENSCPOG00000015569) #22	SH3D19 (ENSCPOG00000008883) #23	PRSS48 (ENSCPOG00000000281) #25	FHIP1A (ENSCPOG00000005019) #26	GATB (ENSCPOG00000005023) #27	FBXW7 (ENSCPOG00000003804) #30	TMEM154 (ENSCPOG00000009024) #31	TIGD4 (ENSCPOG00000038321) #32	ARFIP1 (ENSCPOG00000010487) #33	FHDC1 (ENSCPOG00000038337) #34	TRIM2 (ENSCPOG00000006108) #36	MND1 (ENSCPOG00000013275) #37	TMEM131L (ENSCPOG00000000629)	TLR2 (ENSCPOG00000025374)	SFRP2 (ENSCPOG00000012235)	DCHS2 (ENSCPOG00000005282)
Hystricomorpha_b	ANCESTRAL SPECIES	89			ENSGT00940000156801	ENSGT00940000158403	ENSGT00940000157587	ENSGT00390000016264	ENSGT00390000017043	ENSGT00940000156171	ENSGT00940000157878	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Long-tailed chinchilla	MODERN SPECIES	178	USP38 (ENSCLAG00000014109)	INPP4B (ENSCLAG00000007216)	IL15 (ENSCLAG00000004056)	ZNF330 (ENSCLAG00000004258)	RNF150 (ENSCLAG00000004503)	TBC1D9 (ENSCLAG00000005220)	ENSCLAG00000005907	LRAT (ENSCLAG00000006584)	ENSCLAG00000006732	ARHGAP10 (ENSCLAG00000007081)	NR3C2 (ENSCLAG00000007723)	IQCM (ENSCLAG00000008040) #16	DCLK2 (ENSCLAG00000009217) #18	LRBA (ENSCLAG00000009578) #19	MAB21L2 (ENSCLAG00000017837) #21	RPS3A (ENSCLAG00000008053) #22	SH3D19 (ENSCLAG00000008133) #23	PRSS48 (ENSCLAG00000008636) #25	ENSCLAG00000015260	FHIP1A (ENSCLAG00000017338) #26	GATB (ENSCLAG00000005772) #27	FBXW7 (ENSCLAG00000006777) #30	TMEM154 (ENSCLAG00000004220) #31	TIGD4 (ENSCLAG00000004949) #32	ARFIP1 (ENSCLAG00000005358) #33	ENSCLAG00000006256 #34	TRIM2 (ENSCLAG00000006548) #36	MND1 (ENSCLAG00000013599) #37	TMEM131L (ENSCLAG00000011814)	TLR2 (ENSCLAG00000017621)	RNF175 (ENSCLAG00000004608)
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	113	TMEM97 (ENSODEG00000016145)	ENSODEG00000015253	TNFAIP1 (ENSODEG00000011070)	ENSODEG00000011713	TMEM199 (ENSODEG00000011129)	SEBOX (ENSODEG00000010900)	VTN (ENSODEG00000011194)	SARM1 (ENSODEG00000010810)	SLC46A1 (ENSODEG00000010157)	ENSODEG00000012254	SLC13A2 (ENSODEG00000011361)	FOXN1 (ENSODEG00000010852)	UNC119 (ENSODEG00000010971)	PIGS (ENSODEG00000012021)	ENSODEG00000010148	ENSODEG00000020008 #22	SPAG5 (ENSODEG00000010862)	RSKR (ENSODEG00000011417)	BLTP2 (ENSODEG00000014063)	SDF2 (ENSODEG00000011998)	SUPT6H (ENSODEG00000011930)	PROCA1 (ENSODEG00000011263)	RAB34 (ENSODEG00000012270)	ENSODEG00000014995	TLCD1 (ENSODEG00000014753)	NEK8 (ENSODEG00000010036)	TRAF4 (ENSODEG00000011454)	FAM222B (ENSODEG00000010451)	ENSODEG00000019697	ERAL1 (ENSODEG00000011337)	FLOT2 (ENSODEG00000011801)
Degu	MODERN SPECIES	245	ENSODEG00000018660	ENSODEG00000000841	ACP1 (ENSODEG00000000890)	ALKAL2 (ENSODEG00000000931)	TMEM18 (ENSODEG00000000266)	TPO (ENSODEG00000000292)	SNTG2 (ENSODEG00000000324)	MBOAT2 (ENSODEG00000000353)	KIDINS220 (ENSODEG00000000415)	ID2 (ENSODEG00000000480)	RNF144A (ENSODEG00000000489)	RSAD2 (ENSODEG00000000506)	CMPK2 (ENSODEG00000000539)	SOX11 (ENSODEG00000000568)	ENSODEG00000000593	ENSODEG00000018607 #22
Degu	MODERN SPECIES	275															NXPH1 (ENSODEG00000001425)	ENSODEG00000018727 #22	ENSODEG00000001385	ENSODEG00000001364	ENSODEG00000001744	UMAD1 (ENSODEG00000001683)	RPA3 (ENSODEG00000001607)	ENSODEG00000001526	ENSODEG00000001473	ENSODEG00000001444	COL28A1 (ENSODEG00000000965)	C1GALT1 (ENSODEG00000000888)	ENSODEG00000000873	ENSODEG00000000860	ENSODEG00000000846	TAC1 (ENSODEG00000000835)
Degu	MODERN SPECIES	94	TRMT9B (ENSODEG00000004422)	ENSODEG00000004736	LONRF1 (ENSODEG00000004254)	PRAG1 (ENSODEG00000004326)	CLDN23 (ENSODEG00000019489)	MFHAS1 (ENSODEG00000004525)	ERI1 (ENSODEG00000004586)	PPP1R3B (ENSODEG00000019115)	ENSODEG00000005017	TNKS (ENSODEG00000004893)	DUSP4 (ENSODEG00000005526)	SARAF (ENSODEG00000005565)	LEPROTL1 (ENSODEG00000005881)	MBOAT4 (ENSODEG00000006303)	ENSODEG00000006428	ENSODEG00000019309 #22	RBPMS (ENSODEG00000006700)	GTF2E2 (ENSODEG00000006742)	ENSODEG00000008593	GSR (ENSODEG00000008858)	UBXN8 (ENSODEG00000004381)	ENSODEG00000004425	ENSODEG00000004553	PURG (ENSODEG00000019280)	WRN (ENSODEG00000004076)	ENSODEG00000004757	ENSODEG00000005162	ENSODEG00000005245	ENSODEG00000018985	BOC (ENSODEG00000004266)	ENSODEG00000004506
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Eurasian red squirrel	MODERN SPECIES	18	LSM6 (ENSSVLG00005009971)	REELD1 (ENSSVLG00005010007)	SLC10A7 (ENSSVLG00005010105)	POU4F2 (ENSSVLG00005010171)	TTC29 (ENSSVLG00005010213)	EDNRA (ENSSVLG00005010545)	TMEM184C (ENSSVLG00005010646)	PRMT9 (ENSSVLG00005010674)	ARHGAP10 (ENSSVLG00005010815)	NR3C2 (ENSSVLG00005010872)	ENSSVLG00005011096	DCLK2 (ENSSVLG00005011376) #18	LRBA (ENSSVLG00005012409) #19	ENSSVLG00005013232	ENSSVLG00005013273 #19	RPS3A (ENSSVLG00005013409) #22	SH3D19 (ENSSVLG00005013694) #23	ENSSVLG00005013874	ENSSVLG00005013994	FHIP1A (ENSSVLG00005014177) #26	GATB (ENSSVLG00005014243) #27	FBXW7 (ENSSVLG00005014357) #30	ENSSVLG00005014649	TMEM154 (ENSSVLG00005014705) #31	TIGD4 (ENSSVLG00005014754) #32	ARFIP1 (ENSSVLG00005014796) #33	FHDC1 (ENSSVLG00005014939) #34	TRIM2 (ENSSVLG00005014985) #36	ENSSVLG00005015249	ENSSVLG00005015369 #37	TMEM131L (ENSSVLG00005015633)
Marmotini	ANCESTRAL SPECIES	45	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Alpin marmot	MODERN SPECIES	14	MMAA (ENSMMMG00000001552)	ZNF827 (ENSMMMG00000001587)	LSM6 (ENSMMMG00000001638)	REELD1 (ENSMMMG00000001660)	SLC10A7 (ENSMMMG00000001688)	ENSMMMG00000001799	ENSMMMG00000001810	EDNRA (ENSMMMG00000001819)	TMEM184C (ENSMMMG00000001829)	PRMT9 (ENSMMMG00000001857)	ARHGAP10 (ENSMMMG00000001915)	NR3C2 (ENSMMMG00000002054)	DCLK2 (ENSMMMG00000002234) #18	LRBA (ENSMMMG00000002285) #19	MAB21L2 (ENSMMMG00000002553) #21	RPS3A (ENSMMMG00000002563) #22	ENSMMMG00000002583	PRSS48 (ENSMMMG00000002611) #25	ENSMMMG00000002661 #29	FHIP1A (ENSMMMG00000002679) #26	GATB (ENSMMMG00000002702) #27	FBXW7 (ENSMMMG00000002767) #30	ENSMMMG00000002965	TIGD4 (ENSMMMG00000002976) #32	ARFIP1 (ENSMMMG00000002979) #33	FHDC1 (ENSMMMG00000003033) #34	TRIM2 (ENSMMMG00000003057) #36	MND1 (ENSMMMG00000003217) #37	TMEM131L (ENSMMMG00000003263)	TLR2 (ENSMMMG00000003813)	RNF175 (ENSMMMG00000003821)
Marmotini_b	ANCESTRAL SPECIES	119													ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Arctic ground squirrel	MODERN SPECIES	32													DCLK2 (ENSUPAG00010018923) #18	MAB21L2 (ENSUPAG00010018918) #21	LRBA (ENSUPAG00010018745) #19	RPS3A (ENSUPAG00010018732) #22	PRSS48 (ENSUPAG00010018630) #25	ENSUPAG00010018617 #29	SH3D19 (ENSUPAG00010018552) #23	ENSUPAG00010018537	FHIP1A (ENSUPAG00010018526) #26	GATB (ENSUPAG00010018482) #27	FBXW7 (ENSUPAG00010018370) #30	TMEM154 (ENSUPAG00010018356) #31	TIGD4 (ENSUPAG00010018343) #32	ARFIP1 (ENSUPAG00010018283) #33	ENSUPAG00010018268 #34	ENSUPAG00010018263	TRIM2 (ENSUPAG00010018052) #36	MND1 (ENSUPAG00010018038) #37	TMEM131L (ENSUPAG00010017965)
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	289													DCLK2 (ENSSTOG00000009551) #18	LRBA (ENSSTOG00000009572) #19	MAB21L2 (ENSSTOG00000012240) #21	RPS3A (ENSSTOG00000024203) #22	SH3D19 (ENSSTOG00000009638) #23	PRSS48 (ENSSTOG00000012642) #25	FHIP1A (ENSSTOG00000026038) #26	GATB (ENSSTOG00000005689) #27	FBXW7 (ENSSTOG00000021503) #30	TMEM154 (ENSSTOG00000030085) #31	TIGD4 (ENSSTOG00000020903) #32	ARFIP1 (ENSSTOG00000025144) #33	ENSSTOG00000025555	FHDC1 (ENSSTOG00000026663) #34
Squirrel	MODERN SPECIES	73	GALNT15 (ENSSTOG00000021175)	ENSSTOG00000033525	OXNAD1 (ENSSTOG00000000071)	RFTN1 (ENSSTOG00000000072)	ENSSTOG00000022122	PLCL2 (ENSSTOG00000000749)	TBC1D5 (ENSSTOG00000028034)	SATB1 (ENSSTOG00000010856)	KCNH8 (ENSSTOG00000023006)	RAB5A (ENSSTOG00000026229)	PP2D1 (ENSSTOG00000012388)	KAT2B (ENSSTOG00000002904)	SGO1 (ENSSTOG00000003766)	ENSSTOG00000031366	ZNF385D (ENSSTOG00000005742)	ENSSTOG00000028898 #22	ENSSTOG00000034552	UBE2E1 (ENSSTOG00000025799)	NKIRAS1 (ENSSTOG00000010538)	ENSSTOG00000011153	ENSSTOG00000022967	ENSSTOG00000002444	THRB (ENSSTOG00000005197)	RARB (ENSSTOG00000007994)	TOP2B (ENSSTOG00000008012)	NGLY1 (ENSSTOG00000000939)	OXSM (ENSSTOG00000004977)	LRRC3B (ENSSTOG00000010920)	NEK10 (ENSSTOG00000012142)	SLC4A7 (ENSSTOG00000012151)	ENSSTOG00000023565
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000001441	Mdm1 (ENSDORG00000001536)	Rap1b (ENSDORG00000001086)	Nup107 (ENSDORG00000005178)	Slc35e3 (ENSDORG00000029538)	Mdm2 (ENSDORG00000007222)	Cpm (ENSDORG00000008071)	Cpsf6 (ENSDORG00000002950)	ENSDORG00000004525	ENSDORG00000029604	Yeats4 (ENSDORG00000004942)	Frs2 (ENSDORG00000026974)	Cct2 (ENSDORG00000010325)	Lrrc10 (ENSDORG00000010326)	Best3 (ENSDORG00000010327)	ENSDORG00000029506 #22	ENSDORG00000024631	ENSDORG00000027759	Myrfl (ENSDORG00000000849)	ENSDORG00000026732	Cnot2 (ENSDORG00000011201)	Kcnmb4 (ENSDORG00000027718)	Ptprb (ENSDORG00000011204)	Ptprr (ENSDORG00000000928)	Tspan8 (ENSDORG00000003043)	Lgr5 (ENSDORG00000006266)	ENSDORG00000028010	ENSDORG00000028837	Thap2 (ENSDORG00000006270)	Tmem19 (ENSDORG00000001530)	ENSDORG00000004732
Myomorpha	ANCESTRAL SPECIES	41	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Lesser Egyptian jerboa	MODERN SPECIES	57	ENSJJAG00000013845	ENSJJAG00000019609	Mmaa (ENSJJAG00000012406)	ENSJJAG00000019141	Otud4 (ENSJJAG00000011777)	Hhip (ENSJJAG00000012058)	Prmt9 (ENSJJAG00000022258)	Arhgap10 (ENSJJAG00000024127)	Nr3c2 (ENSJJAG00000014359)	Iqcm (ENSJJAG00000001722) #16	Dclk2 (ENSJJAG00000021674) #18	ENSJJAG00000023104 #19	Mab21l2 (ENSJJAG00000009027) #21	ENSJJAG00000023999	ENSJJAG00000009645 #19	Rps3a1 (ENSJJAG00000021259) #22	Sh3d19 (ENSJJAG00000022007) #23	Fhip1a (ENSJJAG00000012235) #26	Gatb (ENSJJAG00000016979) #27	Fbxw7 (ENSJJAG00000014251) #30	Tmem154 (ENSJJAG00000022208) #31	Tigd4 (ENSJJAG00000006232) #32	Arfip1 (ENSJJAG00000023351) #33	Fhdc1 (ENSJJAG00000018260) #34	Trim2 (ENSJJAG00000023567) #36	Mnd1 (ENSJJAG00000012078) #37	Tmem131l (ENSJJAG00000023952)	Sfrp2 (ENSJJAG00000016453)	Dchs2 (ENSJJAG00000022152)	ENSJJAG00000023587	Plrg1 (ENSJJAG00000015731)
Muroidea	ANCESTRAL SPECIES	67													ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Upper Galilee mountains blind mole rat	MODERN SPECIES	1683												Dclk2 (ENSNGAG00000018789) #18	ENSNGAG00000016914 #19	Mab21l2 (ENSNGAG00000005574) #21	ENSNGAG00000022194 #19	Rps3a1 (ENSNGAG00000007978) #22	Sh3d19 (ENSNGAG00000022677) #23	Fhip1a (ENSNGAG00000020022) #26	Gatb (ENSNGAG00000002152) #27	ENSNGAG00000008115	Fbxw7 (ENSNGAG00000014171) #30	Tmem154 (ENSNGAG00000021478) #31	Tigd4 (ENSNGAG00000007390) #32	Arfip1 (ENSNGAG00000023842) #33	Fhdc1 (ENSNGAG00000006851) #34	Trim2 (ENSNGAG00000012398) #36	Mnd1 (ENSNGAG00000013459) #37	Tmem131l (ENSNGAG00000017189)	Tlr2 (ENSNGAG00000010468)	Sfrp2 (ENSNGAG00000018279)	Dchs2 (ENSNGAG00000019461)
Muroidea_A	DUPLICATION
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.a #22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.a #22
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00390000018433.s.b.i #22	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.h.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Prairie vole	MODERN SPECIES													Dclk2 (ENSMOCG00000013147) #18	ENSMOCG00000013544 #19	Mab21l2 (ENSMOCG00000008360) #21	ENSMOCG00000006642 #19	ENSMOCG00000020260 #22	Sh3d19 (ENSMOCG00000012871) #23	Prss48 (ENSMOCG00000020724) #25	Fhip1a (ENSMOCG00000018759) #26	Gatb (ENSMOCG00000017566) #27	Fbxw7 (ENSMOCG00000002987) #30	Tmem154 (ENSMOCG00000014987) #31	Tigd4 (ENSMOCG00000007422) #32	Arfip1 (ENSMOCG00000016057) #33	Fhdc1 (ENSMOCG00000022338) #34	Trim2 (ENSMOCG00000015197) #36	ENSMOCG00000015791	Mnd1 (ENSMOCG00000013449) #37	Tmem131l (ENSMOCG00000013745)	Tlr2 (ENSMOCG00000004015)	Sfrp2 (ENSMOCG00000006475)
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.h.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Chinese hamster chok1gshd	MODERN SPECIES	352	Arhgef11 (ENSCGRG00001018844)	ENSCGRG00001022805	Etv3 (ENSCGRG00001023444)	Fcrl5 (ENSCGRG00001024696)	Fcrl1 (ENSCGRG00001002734)	Cd5l (ENSCGRG00001024433)	ENSCGRG00001010645 #29	Fcrls (ENSCGRG00001023718)	Kirrel (ENSCGRG00001019106)	ENSCGRG00001024546	ENSCGRG00001001996	Dclk2 (ENSCGRG00001024523) #18	Lrba (ENSCGRG00001011663) #19	Mab21l2 (ENSCGRG00001011307) #21	ENSCGRG00001019518	Rps3a1 (ENSCGRG00001017462) #22	Sh3d19 (ENSCGRG00001000110) #23	Prss48 (ENSCGRG00001016837) #25	ENSCGRG00001000269	Fhip1a (ENSCGRG00001016327) #26	GATB (ENSCGRG00001024051) #27	Fbxw7 (ENSCGRG00001024605) #30	Tmem154 (ENSCGRG00001020221) #31	Tigd4 (ENSCGRG00001012439) #32	Arfip1 (ENSCGRG00001022813) #33	Fhdc1 (ENSCGRG00001002573) #34	Trim2 (ENSCGRG00001007113) #36	ENSCGRG00001024742 #37	Tmem131l (ENSCGRG00001007404)	Tlr2 (ENSCGRG00001013303)	Sfrp2 (ENSCGRG00001014141)
Murinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.a #22
Rat	MODERN SPECIES	2	Mb21d2 (ENSRNOG00000024040)	Fgf12 (ENSRNOG00000001931)	ENSRNOG00000067098 #20	Ccdc50 (ENSRNOG00000001930)	Uts2b (ENSRNOG00000038512)	Ostn (ENSRNOG00000030462)	Gmnc (ENSRNOG00000038505)	Il1rap (ENSRNOG00000001928)	Tmem207 (ENSRNOG00000064931)	Cldn16 (ENSRNOG00000055138)	Cldn1 (ENSRNOG00000001926)	P3h2 (ENSRNOG00000055751)	Tp63 (ENSRNOG00000001924)	Tprg1 (ENSRNOG00000063970)	Lpp (ENSRNOG00000031669)	LOC100365839 (ENSRNOG00000048109) #22	Bcl6 (ENSRNOG00000001843)	Gm37419 (ENSRNOG00000069169)	Rtp2 (ENSRNOG00000022160)	Sst (ENSRNOG00000001837)	Rtp4 (ENSRNOG00000066242)	Masp1 (ENSRNOG00000001827)	Rtp1 (ENSRNOG00000021992)	St6gal1 (ENSRNOG00000001823)	Adipoq (ENSRNOG00000001821)	Rfc4 (ENSRNOG00000001816)	Eif4a2 (ENSRNOG00000001815)	Kng1 (ENSRNOG00000030387)	Kng2 (ENSRNOG00000065935)	LOC681544 (ENSRNOG00000070559)	LOC681544 (ENSRNOG00000001809)
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.b #22
Cricetidae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.b #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.b #22
Prairie vole	MODERN SPECIES	15	Dbil5 (ENSMOCG00000004108)	Gemin4 (ENSMOCG00000016454)	Mrm3 (ENSMOCG00000018749)	Nxn (ENSMOCG00000014329)	Timm22 (ENSMOCG00000021862)	Abr (ENSMOCG00000017665)	ENSMOCG00000004581	Bhlha9 (ENSMOCG00000002327)	Trarg1 (ENSMOCG00000020924)	Gosr1 (ENSMOCG00000011008)	Cpd (ENSMOCG00000011977)	ENSMOCG00000008686	Blmh (ENSMOCG00000007175)	Slc6a4 (ENSMOCG00000004407)	Nsrp1 (ENSMOCG00000019716)	ENSMOCG00000016597 #22	Efcab5 (ENSMOCG00000006093)	ENSMOCG00000006899	Coro6 (ENSMOCG00000013111)	Ankrd13b (ENSMOCG00000008806)	Git1 (ENSMOCG00000011144)	Trp53i13 (ENSMOCG00000006130)	ENSMOCG00000012497	Abhd15 (ENSMOCG00000020292)	ENSMOCG00000002833	Taok1 (ENSMOCG00000007289)	Nufip2 (ENSMOCG00000022086)	Cryba1 (ENSMOCG00000009961)	ENSMOCG00000002378	Myo18a (ENSMOCG00000022942)	Pipox (ENSMOCG00000020266)
Murinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.h.b #22
Rat	MODERN SPECIES	11	Pear1 (ENSRNOG00000014243)	Lrrc71 (ENSRNOG00000014937)	Arhgef11 (ENSRNOG00000015026)	Etv3l (ENSRNOG00000043511)	Etv3 (ENSRNOG00000043095)	Fcrl5 (ENSRNOG00000043414)	Fcrl1 (ENSRNOG00000034230)	Elp4-ps1 (ENSRNOG00000016146)	Fcrl2 (ENSRNOG00000016164)	Kirrel1 (ENSRNOG00000016408)	ENSRNOG00000064959	Cd1d1 (ENSRNOG00000016451)	Dclk2 (ENSRNOG00000016550) #18	Mab21l2 (ENSRNOG00000031398) #21	Lrba (ENSRNOG00000023453) #19	Rps3a (ENSRNOG00000011893) #22	Prss48 (ENSRNOG00000024208) #25	Sh3d19 (ENSRNOG00000011752) #23	Fhip1a (ENSRNOG00000048256) #26	Gatb (ENSRNOG00000037655) #27	ENSRNOG00000070421	AABR07012054.1 (ENSRNOG00000049530)	Dear (ENSRNOG00000033147)	Fbxw7 (ENSRNOG00000010889) #30	Tmem154 (ENSRNOG00000010866) #31	Tigd4 (ENSRNOG00000010741) #32	Arfip1 (ENSRNOG00000010533) #33	Fhdc1 (ENSRNOG00000024594) #34	Trim2 (ENSRNOG00000010124) #36	Mnd1 (ENSRNOG00000024733) #37	Tmem131l (ENSRNOG00000009837)
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Cricetinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.i #22
Golden Hamster	MODERN SPECIES	621	Adat2 (ENSMAUG00000013019)	Pex3 (ENSMAUG00000010762)	Fuca2 (ENSMAUG00000021938)	Phactr2 (ENSMAUG00000022240)	Ltv1 (ENSMAUG00000021486)	Zc2hc1b (ENSMAUG00000019428)	ENSMAUG00000002849	Sf3b5 (ENSMAUG00000008283)	Stx11 (ENSMAUG00000002127)	ENSMAUG00000006284	Epm2a (ENSMAUG00000020519)	Fbxo30 (ENSMAUG00000005075)	ENSMAUG00000018968	ENSMAUG00000004780	Grm1 (ENSMAUG00000003741)	ENSMAUG00000007708 #22	ENSMAUG00000012160	Adgb (ENSMAUG00000018683)	Stxbp5 (ENSMAUG00000021149)	Samd5 (ENSMAUG00000011794)	ENSMAUG00000001554	ENSMAUG00000020795	ENSMAUG00000008799	Tab2 (ENSMAUG00000011287)	Zc3h12d (ENSMAUG00000015783)	Ppil4 (ENSMAUG00000015059)	Ginm1 (ENSMAUG00000008067)	ENSMAUG00000016471	ENSMAUG00000012301	Lats1 (ENSMAUG00000020092)	Nup43 (ENSMAUG00000018659)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000160437	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00390000018433.s.b.i #22	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.h.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323
Northern American deer mouse	MODERN SPECIES	19	Ntrk1 (ENSPEMG00000002759)	Pear1 (ENSPEMG00000009313)	Lrrc71 (ENSPEMG00000018998)	Arhgef11 (ENSPEMG00000029720)	ENSPEMG00000018038	Etv3 (ENSPEMG00000029165)	Fcrl5 (ENSPEMG00000007612)	Fcrl1 (ENSPEMG00000014268)	Fcrls (ENSPEMG00000011018)	Kirrel (ENSPEMG00000004718)	ENSPEMG00000006771	ENSPEMG00000013831	Dclk2 (ENSPEMG00000011194) #18	Mab21l2 (ENSPEMG00000027560) #21	Lrba (ENSPEMG00000001439) #19	Rps3a1 (ENSPEMG00000002589) #22	Sh3d19 (ENSPEMG00000012766) #23	Prss48 (ENSPEMG00000016792) #25	Fhip1a (ENSPEMG00000015915) #26	Gatb (ENSPEMG00000011096) #27	Fbxw7 (ENSPEMG00000009071) #30	Tmem154 (ENSPEMG00000027778) #31	Tigd4 (ENSPEMG00000000747) #32	Arfip1 (ENSPEMG00000010707) #33	Fhdc1 (ENSPEMG00000017047) #34	Trim2 (ENSPEMG00000011256) #36	Mnd1 (ENSPEMG00000010374) #37	Tmem131l (ENSPEMG00000027757)	Tlr2 (ENSPEMG00000009603)	Sfrp2 (ENSPEMG00000005587)	Dchs2 (ENSPEMG00000000300)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Mus	ANCESTRAL SPECIES	7	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00510000047493.f	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b.a #33	ENSGT00950000183040.A.b.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000161656	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Shrew mouse	MODERN SPECIES	17	Ntrk1 (MGP_PahariEiJ_G0026583)	MGP_PahariEiJ_G0026582	Lrrc71 (MGP_PahariEiJ_G0026581)	Arhgef11 (MGP_PahariEiJ_G0026580)	Etv3 (MGP_PahariEiJ_G0026579)	Fcrl5 (MGP_PahariEiJ_G0026578)	Fcrl1 (MGP_PahariEiJ_G0026577)	Cd5l (MGP_PahariEiJ_G0026576)	Fcrls (MGP_PahariEiJ_G0026575)	Kirrel (MGP_PahariEiJ_G0026574)	MGP_PahariEiJ_G0026573	MGP_PahariEiJ_G0026572	Dclk2 (MGP_PahariEiJ_G0026571) #18	Mab21l2 (MGP_PahariEiJ_G0026570) #21	Lrba (MGP_PahariEiJ_G0026569) #19	Rps3a1 (MGP_PahariEiJ_G0026568) #22	Prss48 (MGP_PahariEiJ_G0026567) #25	MGP_PahariEiJ_G0026566 #23	Glt28d2 (MGP_PahariEiJ_G0026565)	Fhip1a (MGP_PahariEiJ_G0026564) #26	Gatb (MGP_PahariEiJ_G0026563) #27	Fbxw7 (MGP_PahariEiJ_G0026562) #30	Tmem154 (MGP_PahariEiJ_G0026561) #31	Tigd4 (MGP_PahariEiJ_G0026560) #32	MGP_PahariEiJ_G0026559 #33	Arfip1 (MGP_PahariEiJ_G0026558) #33	Fhdc1 (MGP_PahariEiJ_G0026557) #34	MGP_PahariEiJ_G0026556	Trim2 (MGP_PahariEiJ_G0026555) #36	Mnd1 (MGP_PahariEiJ_G0026554) #37	Tmem131l (MGP_PahariEiJ_G0026553)
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00510000047493.f	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b.a #33	ENSGT00950000183040.A.b.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000161656	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00510000047493.f	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b.a #33	ENSGT00950000183040.A.b.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000161656	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000159412	ENSGT00940000154225.a	ENSGT00440000034367	ENSGT00940000158350	ENSGT00940000162271	ENSGT00940000160963	ENSGT01050000244808.D.fb.b.a.a.a.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000155795	ENSGT01100000263475.d.a.h	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.i #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00510000047493.f	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b.a #33	ENSGT00950000183040.A.b.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000161656	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Steppe mouse	MODERN SPECIES	3301	Arhgef11 (ENSMSIG00000022032)	ENSMSIG00000022013	Etv3 (ENSMSIG00000021999)	Fcrl5 (ENSMSIG00000021749)	Fcrl1 (ENSMSIG00000021600)	Cd5l (ENSMSIG00000021580)	Fcrls (ENSMSIG00000021565)	Kirrel (ENSMSIG00000021460)	ENSMSIG00000021446	ENSMSIG00000021403	ENSMSIG00000021384	ENSMSIG00000021374	Dclk2 (ENSMSIG00000021032) #18	Mab21l2 (ENSMSIG00000021015) #21	Lrba (ENSMSIG00000020600) #19	Rps3a1 (ENSMSIG00000020554) #22	Prss48 (ENSMSIG00000020531) #25	Sh3d19 (ENSMSIG00000020467) #23	Glt28d2 (ENSMSIG00000020437)	Fhip1a (ENSMSIG00000020416) #26	ENSMSIG00000020354 #27	ENSMSIG00000020319	ENSMSIG00000020316	Fbxw7 (ENSMSIG00000020233) #30	Tmem154 (ENSMSIG00000020217) #31	Tigd4 (ENSMSIG00000020213) #32	Arfip1 (ENSMSIG00000020145) #33	Fhdc1 (ENSMSIG00000020098) #34	ENSMSIG00000020078	Gm6525 (ENSMSIG00000020071)	Trim2 (ENSMSIG00000020008) #36
spretus	MODERN SPECIES	12	Insrr (MGP_SPRETEiJ_G0026082)	Ntrk1 (MGP_SPRETEiJ_G0026081)	MGP_SPRETEiJ_G0026080	Lrrc71 (MGP_SPRETEiJ_G0026079)	Arhgef11 (MGP_SPRETEiJ_G0026078)	Etv3 (MGP_SPRETEiJ_G0026077)	Fcrl5 (MGP_SPRETEiJ_G0026076)	Fcrl1 (MGP_SPRETEiJ_G0026075)	Cd5l (MGP_SPRETEiJ_G0026074)	Fcrls (MGP_SPRETEiJ_G0026073)	Kirrel (MGP_SPRETEiJ_G0026072)	MGP_SPRETEiJ_G0026071	Dclk2 (MGP_SPRETEiJ_G0026070) #18	Mab21l2 (MGP_SPRETEiJ_G0026069) #21	Lrba (MGP_SPRETEiJ_G0026068) #19	Rps3a1 (MGP_SPRETEiJ_G0026067) #22	Prss48 (MGP_SPRETEiJ_G0026066) #25	MGP_SPRETEiJ_G0026065 #23	Glt28d2 (MGP_SPRETEiJ_G0026064)	Fhip1a (MGP_SPRETEiJ_G0026063) #26	Gatb (MGP_SPRETEiJ_G0026062) #27	Fbxw7 (MGP_SPRETEiJ_G0026061) #30	Tmem154 (MGP_SPRETEiJ_G0026060) #31	Tigd4 (MGP_SPRETEiJ_G0026059) #32	MGP_SPRETEiJ_G0026058 #33	Arfip1 (MGP_SPRETEiJ_G0026057) #33	Fhdc1 (MGP_SPRETEiJ_G0026056) #34	Gm6525 (MGP_SPRETEiJ_G0026055)	Trim2 (MGP_SPRETEiJ_G0026054) #36	Mnd1 (MGP_SPRETEiJ_G0026053) #37	Tmem131l (MGP_SPRETEiJ_G0026052)
Mouse	MODERN SPECIES	12	Pear1 (ENSMUSG00000028073)	Lrrc71 (ENSMUSG00000023084)	Arhgef11 (ENSMUSG00000041977)	Etv3l (ENSMUSG00000118505)	Etv3 (ENSMUSG00000003382)	Fcrl5 (ENSMUSG00000048031)	Fcrl1 (ENSMUSG00000059994)	Cd5l (ENSMUSG00000015854)	Fcrls (ENSMUSG00000015852)	Kirrel (ENSMUSG00000041734)	Cd1d1 (ENSMUSG00000028076)	Cd1d2 (ENSMUSG00000041750)	Dclk2 (ENSMUSG00000028078) #18	Mab21l2 (ENSMUSG00000057777) #21	Lrba (ENSMUSG00000028080) #19	Rps3a1 (ENSMUSG00000028081) #22	Prss48 (ENSMUSG00000049013) #25	Sh3d19 (ENSMUSG00000028082) #23	Glt28d2 (ENSMUSG00000031286)	Fhip1a (ENSMUSG00000051000) #26	Gatb (ENSMUSG00000028085) #27	Fbxw7 (ENSMUSG00000028086) #30	Tmem154 (ENSMUSG00000056498) #31	Tigd4 (ENSMUSG00000047819) #32	Gm37240 (ENSMUSG00000102805)	Arfip1 (ENSMUSG00000074513) #33	Fhdc1 (ENSMUSG00000041842) #34	Gm6525 (ENSMUSG00000104043)	Trim2 (ENSMUSG00000027993) #36	Mnd1 (ENSMUSG00000033752) #37	Tmem131l (ENSMUSG00000033767)
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	523														ENSOCUG00000037540	ENSOCUG00000032330	ENSOCUG00000024968 #22	ENSOCUG00000021516	ENSOCUG00000036669
Rabbit	MODERN SPECIES	6											PCDH10 (ENSOCUG00000005826)	ENSOCUG00000005258	ENSOCUG00000021328	ENSOCUG00000030410	ENSOCUG00000038573	ENSOCUG00000027214 #22	ENSOCUG00000036708	C4orf33 (ENSOCUG00000015092)	SCLT1 (ENSOCUG00000015077)	JADE1 (ENSOCUG00000004521)	PGRMC2 (ENSOCUG00000002372)	LARP1B (ENSOCUG00000013330)	ABHD18 (ENSOCUG00000005526)	MFSD8 (ENSOCUG00000015003)	PLK4 (ENSOCUG00000005009)	ENSOCUG00000035820	HSPA4L (ENSOCUG00000027940)	SLC25A31 (ENSOCUG00000015617)	INTU (ENSOCUG00000001278)	FAT4 (ENSOCUG00000008710)	ANKRD50 (ENSOCUG00000006096)
Rabbit	MODERN SPECIES	15	TIMP3 (ENSOCUG00000008310)	FBXO7 (ENSOCUG00000008289)	ENSOCUG00000008280	PRDM4 (ENSOCUG00000012859)	PWP1 (ENSOCUG00000002724)	ABTB3 (ENSOCUG00000002716)	CRY1 (ENSOCUG00000013721)	MTERF2 (ENSOCUG00000009560)	TMEM263 (ENSOCUG00000009563)	RIC8B (ENSOCUG00000006126)	RFX4 (ENSOCUG00000028228)	POLR3B (ENSOCUG00000000884)	ENSOCUG00000034904	CKAP4 (ENSOCUG00000000187)	NUAK1 (ENSOCUG00000004958)	ENSOCUG00000022751 #22	ENSOCUG00000034454	APPL2 (ENSOCUG00000005042)	WASHC4 (ENSOCUG00000005030)	ALDH1L2 (ENSOCUG00000006962)	NOPCHAP1 (ENSOCUG00000006960)
Rabbit	MODERN SPECIES	1401	ENSOCUG00000010629	ENSOCUG00000010859	ENSOCUG00000010855	BTK (ENSOCUG00000010621)	ENSOCUG00000027477	TAF7L (ENSOCUG00000004497)	DRP2 (ENSOCUG00000004487)	CENPI (ENSOCUG00000011953)	TMEM35A (ENSOCUG00000011961)	TRMT2B (ENSOCUG00000011945)	ENSOCUG00000023605	ENSOCUG00000005963	XKRX (ENSOCUG00000005661)	NOX1 (ENSOCUG00000005652)	CSTF2 (ENSOCUG00000010468)	ENSOCUG00000023695 #22	SYTL4 (ENSOCUG00000011193)	SRPX2 (ENSOCUG00000011186)	TSPAN6 (ENSOCUG00000011184)	TNMD (ENSOCUG00000011179)	PCDH19 (ENSOCUG00000015865)	ENSOCUG00000003552	DIAPH2 (ENSOCUG00000007109)	ENSOCUG00000038471	ENSOCUG00000030699 #20	ENSOCUG00000033765	ENSOCUG00000025252	ENSOCUG00000013944	ENSOCUG00000029262	ZBTB33 (ENSOCUG00000004331)	TMEM255A (ENSOCUG00000004334)
Rabbit	MODERN SPECIES	14	CA3 (ENSOCUG00000011736)	CA2 (ENSOCUG00000011742)	ATP6V0D2 (ENSOCUG00000010247)	PSKH2 (ENSOCUG00000003992)	ENSOCUG00000026370	SLC7A13 (ENSOCUG00000017971)	WWP1 (ENSOCUG00000001081)	RMDN1 (ENSOCUG00000001086)	CPNE3 (ENSOCUG00000017961)	CNGB3 (ENSOCUG00000017962)	CNBD1 (ENSOCUG00000029386)	MMP16 (ENSOCUG00000011230)	ENSOCUG00000032504	ENSOCUG00000016091	RIPK2 (ENSOCUG00000001542)	ENSOCUG00000025532 #22	ENSOCUG00000030509 #20	OSGIN2 (ENSOCUG00000009931)	NBN (ENSOCUG00000009935)	ENSOCUG00000006333	ENSOCUG00000006341	ENSOCUG00000021479	ENSOCUG00000006890	NECAB1 (ENSOCUG00000001277)	ENSOCUG00000023574	ENSOCUG00000030280	ENSOCUG00000000723	OTUD6B (ENSOCUG00000000218)	LRRC69 (ENSOCUG00000028994)	SLC26A7 (ENSOCUG00000012527)	ENSOCUG00000027627
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	6034															LPIN2 (ENSTBEG00000009160)	ENSTBEG00000009032 #22	EMILIN2 (ENSTBEG00000008658)	ENSTBEG00000006736
Tree shrew	MODERN SPECIES	313																ENSTBEG00000002963 #22
Primates	ANCESTRAL SPECIES	10	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.a.b.b ##22	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Lemuriformes	ANCESTRAL SPECIES	38	ENSGT00940000154978.n	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.a.b.b ##22	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413.c.a #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a	ENSGT00940000162999
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	27	TMEM109 (ENSMICG00000037640)	TMEM132A (ENSMICG00000042560)	SLC15A3 (ENSMICG00000027981)	CD6 (ENSMICG00000011288)	CD5 (ENSMICG00000013628)	VPS37C (ENSMICG00000034100)	ENSMICG00000013645	VWCE (ENSMICG00000013662)	DDB1 (ENSMICG00000013703)	TKFC (ENSMICG00000013737)	CYB561A3 (ENSMICG00000013766)	TMEM138 (ENSMICG00000047581)	TMEM216 (ENSMICG00000013785)	CPSF7 (ENSMICG00000013788)	SDHAF2 (ENSMICG00000013808)	ENSMICG00000027025 #22	PPP1R32 (ENSMICG00000012749)	LRRC10B (ENSMICG00000030558)	SYT7 (ENSMICG00000013836)	DAGLA (ENSMICG00000013847)	MYRF (ENSMICG00000013870)	TMEM258 (ENSMICG00000013894)	ENSMICG00000029413	FADS1 (ENSMICG00000013915)	FADS2 (ENSMICG00000004145)	FADS3 (ENSMICG00000032887)	RAB3IL1 (ENSMICG00000005824)	BEST1 (ENSMICG00000005843)	ENSMICG00000035165	ENSMICG00000031901	ENSMICG00000044535
Mouse lemur	MODERN SPECIES	5	POU4F2 (ENSMICG00000034755)	TTC29 (ENSMICG00000036587)	EDNRA (ENSMICG00000000581)	TMEM184C (ENSMICG00000000582)	PRMT9 (ENSMICG00000000584)	ARHGAP10 (ENSMICG00000000588)	NR3C2 (ENSMICG00000041449)	ENSMICG00000027816	IQCM (ENSMICG00000039098) #16	ENSMICG00000036842	DCLK2 (ENSMICG00000006224) #18	MAB21L2 (ENSMICG00000045967) #21	ENSMICG00000044938	LRBA (ENSMICG00000006230) #19	ENSMICG00000045323	ENSMICG00000004921 #22	SH3D19 (ENSMICG00000004926) #23	FHIP1A (ENSMICG00000027501) #26	GATB (ENSMICG00000004311) #27	FBXW7 (ENSMICG00000012171) #30	TMEM154 (ENSMICG00000012190) #31	ENSMICG00000045022	ARFIP1 (ENSMICG00000009047) #33	FHDC1 (ENSMICG00000031284) #34	ENSMICG00000028535	TRIM2 (ENSMICG00000005722) #36	ENSMICG00000038652 #37	TMEM131L (ENSMICG00000003179)	RNF175 (ENSMICG00000003199)	SFRP2 (ENSMICG00000038719)	DCHS2 (ENSMICG00000038569)
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Tarsier	MODERN SPECIES	2125															ENSTSYG00000035569	RPS3A (ENSTSYG00000031843) #22	SH3D19 (ENSTSYG00000003764) #23
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00950000184824	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.a.b.b ##22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00950000184824	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000155657.db.a.b
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00950000184824	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000155657.db.a.b
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	19	HYAL3 (ENSNLEG00000006981)	NAA80 (ENSNLEG00000018540)	HYAL1 (ENSNLEG00000006983)	HYAL2 (ENSNLEG00000006986)	TUSC2 (ENSNLEG00000006988)	RASSF1 (ENSNLEG00000006991)	ZMYND10 (ENSNLEG00000006996)	NPRL2 (ENSNLEG00000007003)	CYB561D2 (ENSNLEG00000007006)	TMEM115 (ENSNLEG00000031055)	CACNA2D2 (ENSNLEG00000007008)	C3orf18 (ENSNLEG00000035502)	HEMK1 (ENSNLEG00000007025)	CISH (ENSNLEG00000007030)	MAPKAPK3 (ENSNLEG00000007011)	ENSNLEG00000034096 #22	DOCK3 (ENSNLEG00000007031)	ENSNLEG00000007033	RBM15B (ENSNLEG00000018541)	DCAF1 (ENSNLEG00000007035)	RAD54L2 (ENSNLEG00000007038)	ENSNLEG00000007040	GRM2 (ENSNLEG00000007044)	ENSNLEG00000007047	IQCF3 (ENSNLEG00000007049)	IQCF2 (ENSNLEG00000007050)	IQCF5 (ENSNLEG00000018542)	IQCF1 (ENSNLEG00000007053)	RRP9 (ENSNLEG00000007054)	PARP3 (ENSNLEG00000007058)	ENSNLEG00000007063
Gibbon	MODERN SPECIES	22	ENSNLEG00000036026	POU4F2 (ENSNLEG00000005619)	TTC29 (ENSNLEG00000005624)	EDNRA (ENSNLEG00000005640)	ENSNLEG00000005651	PRMT9 (ENSNLEG00000005657)	ARHGAP10 (ENSNLEG00000005671)	NR3C2 (ENSNLEG00000005677)	IQCM (ENSNLEG00000027154) #16	ENSNLEG00000027456	DCLK2 (ENSNLEG00000005691) #18	LRBA (ENSNLEG00000005731) #19	ENSNLEG00000033639	MAB21L2 (ENSNLEG00000035778) #21	ENSNLEG00000032859	ENSNLEG00000005815 #22	SH3D19 (ENSNLEG00000005818) #23	PRSS48 (ENSNLEG00000005825) #25	FHIP1A (ENSNLEG00000005829) #26	GATB (ENSNLEG00000005836) #27	FBXW7 (ENSNLEG00000005860) #30	TMEM154 (ENSNLEG00000032380) #31	TIGD4 (ENSNLEG00000005902) #32	ARFIP1 (ENSNLEG00000005906) #33	ENSNLEG00000005921	FHDC1 (ENSNLEG00000005922) #34	TRIM2 (ENSNLEG00000005924) #36	ENSNLEG00000005935	ENSNLEG00000030881	MND1 (ENSNLEG00000005936) #37	TMEM131L (ENSNLEG00000005942)
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000155657.db.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000155657.db.a.b
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000155657.db.a.b
Human	MODERN SPECIES	16	ZNF827 (ENSG00000151612)	LSM6 (ENSG00000164167)	REELD1 (ENSG00000250673)	SLC10A7 (ENSG00000120519)	POU4F2 (ENSG00000151615)	TTC29 (ENSG00000137473)	EDNRA (ENSG00000151617)	TMEM184C (ENSG00000164168)	PRMT9 (ENSG00000164169)	ARHGAP10 (ENSG00000071205)	NR3C2 (ENSG00000151623)	IQCM (ENSG00000234828) #16	DCLK2 (ENSG00000170390) #18	LRBA (ENSG00000198589) #19	MAB21L2 (ENSG00000181541) #21	RPS3A (ENSG00000145425) #22	SH3D19 (ENSG00000109686) #23	PRSS48 (ENSG00000189099) #25	FHIP1A (ENSG00000164142) #26	GATB (ENSG00000059691) #27	FBXW7 (ENSG00000109670) #30	TMEM154 (ENSG00000170006) #31	TIGD4 (ENSG00000169989) #32	ARFIP1 (ENSG00000164144) #33	FHDC1 (ENSG00000137460) #34	TRIM2 (ENSG00000109654) #36	ENSG00000288637	MND1 (ENSG00000121211) #37	TMEM131L (ENSG00000121210)	TLR2 (ENSG00000137462)	RNF175 (ENSG00000145428)
Pan	ANCESTRAL SPECIES	7	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000153230.B.b	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000155657.db.a.b
Bonobo	MODERN SPECIES	18	KCNN2 (ENSPPAG00000043586)	ENSPPAG00000012064	YTHDC2 (ENSPPAG00000018854)	MCC (ENSPPAG00000001501)	DCP2 (ENSPPAG00000042108)	ENSPPAG00000008683	ENSPPAG00000026840	SRP19 (ENSPPAG00000037062)	APC (ENSPPAG00000032467)	EPB41L4A (ENSPPAG00000040652)	ENSPPAG00000042559	ENSPPAG00000039695	ENSPPAG00000031387	STARD4 (ENSPPAG00000039524)	CAMK4 (ENSPPAG00000041231)	ENSPPAG00000029092 #22	WDR36 (ENSPPAG00000023560)	ENSPPAG00000043068	TSLP (ENSPPAG00000037495)	ENSPPAG00000029536	SLC25A46 (ENSPPAG00000042617)	TMEM232 (ENSPPAG00000039615)	ENSPPAG00000001922	ENSPPAG00000036482	MAN2A1 (ENSPPAG00000037961)	PJA2 (ENSPPAG00000039234)	ENSPPAG00000035716	ENSPPAG00000043941	FER (ENSPPAG00000039597)	ENSPPAG00000035591	ENSPPAG00000028652
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	17	EDNRA (ENSPTRG00000016494)	TMEM184C (ENSPTRG00000016495)	PRMT9 (ENSPTRG00000016496)	ENSPTRG00000045979	ARHGAP10 (ENSPTRG00000016497)	NR3C2 (ENSPTRG00000016499)	IQCM (ENSPTRG00000046099) #16	DCLK2 (ENSPTRG00000016504) #18	LRBA (ENSPTRG00000023095) #19	ENSPTRG00000043716	MAB21L2 (ENSPTRG00000038821) #21	ENSPTRG00000049102	ENSPTRG00000047882 #19	ENSPTRG00000052157 #19	ENSPTRG00000044700 #19	RPS3A (ENSPTRG00000046168) #22	SH3D19 (ENSPTRG00000016509) #23	PRSS48 (ENSPTRG00000016510) #25	FHIP1A (ENSPTRG00000016512) #26	GATB (ENSPTRG00000016513) #27	FBXW7 (ENSPTRG00000016514) #30	TIGD4 (ENSPTRG00000016518) #32	ARFIP1 (ENSPTRG00000016519) #33	ENSPTRG00000016520	FHDC1 (ENSPTRG00000016521) #34	TRIM2 (ENSPTRG00000016522) #36	ENSPTRG00000043478	MND1 (ENSPTRG00000016524) #37	TMEM131L (ENSPTRG00000016527)	ENSPTRG00000052408	TLR2 (ENSPTRG00000016528)
Chimpanzee	MODERN SPECIES	18	KCNN2 (ENSPTRG00000017144)	YTHDC2 (ENSPTRG00000017143)	MCC (ENSPTRG00000017140)	DCP2 (ENSPTRG00000050185)	ENSPTRG00000017138	REEP5 (ENSPTRG00000017137)	SRP19 (ENSPTRG00000017136)	ENSPTRG00000049857	APC (ENSPTRG00000017135)	ENSPTRG00000046651	EPB41L4A (ENSPTRG00000017133)	ENSPTRG00000050776	NREP (ENSPTRG00000017131)	STARD4 (ENSPTRG00000047777)	CAMK4 (ENSPTRG00000017129)	ENSPTRG00000046092 #22	WDR36 (ENSPTRG00000017128)	ENSPTRG00000044276	TSLP (ENSPTRG00000043950)	ENSPTRG00000049886	SLC25A46 (ENSPTRG00000017126)	TMEM232 (ENSPTRG00000017123)	ENSPTRG00000046139	ENSPTRG00000042761	MAN2A1 (ENSPTRG00000017122)	PJA2 (ENSPTRG00000022820)	ENSPTRG00000051898	FER (ENSPTRG00000017117)	ENSPTRG00000052594	FBXL17 (ENSPTRG00000017116)	ENSPTRG00000051006
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	17	ENSGGOG00000034808	POU4F2 (ENSGGOG00000001836)	TTC29 (ENSGGOG00000004691)	EDNRA (ENSGGOG00000000619)	ENSGGOG00000038929	TMEM184C (ENSGGOG00000013660)	PRMT9 (ENSGGOG00000013668)	ARHGAP10 (ENSGGOG00000014936)	NR3C2 (ENSGGOG00000001102)	IQCM (ENSGGOG00000025100) #16	DCLK2 (ENSGGOG00000014019) #18	LRBA (ENSGGOG00000014034) #19	MAB21L2 (ENSGGOG00000014090) #21	ENSGGOG00000011073	ENSGGOG00000043224	RPS3A (ENSGGOG00000003182) #22	SH3D19 (ENSGGOG00000010733) #23	PRSS48 (ENSGGOG00000008111) #25	FHIP1A (ENSGGOG00000016578) #26	GATB (ENSGGOG00000011099) #27	FBXW7 (ENSGGOG00000024434) #30	TMEM154 (ENSGGOG00000024800) #31	TIGD4 (ENSGGOG00000011836) #32	ARFIP1 (ENSGGOG00000008153) #33	ENSGGOG00000043918	FHDC1 (ENSGGOG00000006436) #34	TRIM2 (ENSGGOG00000007303) #36	ENSGGOG00000027243	MND1 (ENSGGOG00000023104) #37	TMEM131L (ENSGGOG00000003778)	ENSGGOG00000043385
Gorilla	MODERN SPECIES	18	TRIM36 (ENSGGOG00000016765)	ENSGGOG00000039744	ENSGGOG00000015564	YTHDC2 (ENSGGOG00000014407)	MCC (ENSGGOG00000001631)	DCP2 (ENSGGOG00000014412)	REEP5 (ENSGGOG00000037456)	ENSGGOG00000027482	ENSGGOG00000038397	APC (ENSGGOG00000005972)	EPB41L4A (ENSGGOG00000011203)	ENSGGOG00000036761	ENSGGOG00000003725	STARD4 (ENSGGOG00000040002)	CAMK4 (ENSGGOG00000007589)	RPS3A (ENSGGOG00000002161) #22	WDR36 (ENSGGOG00000026914)	TSLP (ENSGGOG00000038272)	ENSGGOG00000042018	SLC25A46 (ENSGGOG00000024980)	TMEM232 (ENSGGOG00000005241)	MAN2A1 (ENSGGOG00000001547)	ENSGGOG00000010526	FER (ENSGGOG00000010028)	FBXL17 (ENSGGOG00000015039)	ENSGGOG00000042159	EFNA5 (ENSGGOG00000000371)	ENSGGOG00000027503	NUDT12 (ENSGGOG00000023955)	MACIR (ENSGGOG00000040406)	PPIP5K2 (ENSGGOG00000012250)
Gorilla	MODERN SPECIES	9	ENSGGOG00000013730	ALPK2 (ENSGGOG00000013746)	MALT1 (ENSGGOG00000023405)	ZNF532 (ENSGGOG00000026498)	SEC11C (ENSGGOG00000007358)	ENSGGOG00000038737	GRP (ENSGGOG00000002670)	RAX (ENSGGOG00000006747)	CPLX4 (ENSGGOG00000006750)	LMAN1 (ENSGGOG00000006753)	CCBE1 (ENSGGOG00000016394)	ENSGGOG00000005394	ENSGGOG00000007170	ENSGGOG00000023935	ENSGGOG00000040955	RPS3A (ENSGGOG00000027455) #22	MC4R (ENSGGOG00000015011)	CDH20 (ENSGGOG00000006915)	ENSGGOG00000041434	ENSGGOG00000026693	PIGN (ENSGGOG00000005051)	RELCH (ENSGGOG00000015020)	TNFRSF11A (ENSGGOG00000004309)	ZCCHC2 (ENSGGOG00000002966)	PHLPP1 (ENSGGOG00000005176)	ENSGGOG00000024193	BCL2 (ENSGGOG00000037403)	KDSR (ENSGGOG00000013317)	VPS4B (ENSGGOG00000006727)	SERPINB5 (ENSGGOG00000025505)	ENSGGOG00000041777
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00390000006095.t	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Rhinopithecus	ANCESTRAL SPECIES	100											ENSGT00940000154895.a.a #18	ENSGT00940000154778.t #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00390000006095.t	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000168500	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37
Black snub-nosed monkey	MODERN SPECIES	358												MAB21L2 (ENSRBIG00000024882) #21	ENSRBIG00000016420	ENSRBIG00000044387 #19	ENSRBIG00000039102	RPS3A (ENSRBIG00000031506) #22	SH3D19 (ENSRBIG00000043149) #23	PRSS48 (ENSRBIG00000035216) #25	ENSRBIG00000039614	FHIP1A (ENSRBIG00000032166) #26	GATB (ENSRBIG00000006453) #27	FBXW7 (ENSRBIG00000035783) #30	TMEM154 (ENSRBIG00000039822) #31	TIGD4 (ENSRBIG00000014613) #32	ARFIP1 (ENSRBIG00000027072) #33	ENSRBIG00000043174	FHDC1 (ENSRBIG00000012007) #34	ENSRBIG00000038361	ENSRBIG00000041487	TRIM2 (ENSRBIG00000032464) #36	MND1 (ENSRBIG00000036568) #37
Golden snub-nosed monkey	MODERN SPECIES	1678										DCLK2 (ENSRROG00000009020) #18	MAB21L2 (ENSRROG00000005152) #21	ENSRROG00000024313	ENSRROG00000037134 #29	LRBA (ENSRROG00000039728) #19	ENSRROG00000030795	RPS3A (ENSRROG00000041672) #22	PRSS48 (ENSRROG00000035004) #25	SH3D19 (ENSRROG00000031648) #23	ENSRROG00000043903	FHIP1A (ENSRROG00000031149) #26	GATB (ENSRROG00000041575) #27
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00390000006095.t	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000153377.B.f	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37
Vervet Monkey	MODERN SPECIES	26	ENSCSAG00000003416	SLC10A7 (ENSCSAG00000003414)	POU4F2 (ENSCSAG00000003411)	TTC29 (ENSCSAG00000003409)	EDNRA (ENSCSAG00000003394)	TMEM184C (ENSCSAG00000003385)	PRMT9 (ENSCSAG00000003376)	ARHGAP10 (ENSCSAG00000003372)	ENSCSAG00000003366	DCLK2 (ENSCSAG00000003362) #18	ENSCSAG00000003358	MAB21L2 (ENSCSAG00000000389) #21	LRBA (ENSCSAG00000003355) #19	ENSCSAG00000003348	ENSCSAG00000000388	RPS3A (ENSCSAG00000003344) #22	SH3D19 (ENSCSAG00000003339) #23	PRSS48 (ENSCSAG00000003331) #25	FHIP1A (ENSCSAG00000003322) #26	GATB (ENSCSAG00000003318) #27	FBXW7 (ENSCSAG00000003313) #30	TMEM154 (ENSCSAG00000003309) #31	ENSCSAG00000000387	TIGD4 (ENSCSAG00000000386) #32	ARFIP1 (ENSCSAG00000003306) #33	FHDC1 (ENSCSAG00000003305) #34	ENSCSAG00000003303	TRIM2 (ENSCSAG00000003302) #36	MND1 (ENSCSAG00000003300) #37	TMEM131L (ENSCSAG00000003293)	TLR2 (ENSCSAG00000000385)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT00940000153314.a.a.l.b	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00390000006095.t	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000153377.B.f	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37
Macaca	ANCESTRAL SPECIES	18	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT00940000153314.a.a.l.b	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000153311.a.b.a.fb.a.a.a	ENSGT00940000153377.B.f	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	152		RIC1 (ENSMNEG00000022609)	ERMP1 (ENSMNEG00000028561)	MLANA (ENSMNEG00000031276)	ENSMNEG00000038006	IL33 (ENSMNEG00000041999)	TPD52L3 (ENSMNEG00000033267)	UHRF2 (ENSMNEG00000034080)	GLDC (ENSMNEG00000032546)	ENSMNEG00000033793	ENSMNEG00000031093	KDM4C (ENSMNEG00000029324)	DMAC1 (ENSMNEG00000044495)	ENSMNEG00000030132	PTPRD (ENSMNEG00000036506)	ENSMNEG00000036773 #22	TYRP1 (ENSMNEG00000035543)	LURAP1L (ENSMNEG00000029041)	ENSMNEG00000035930	MPDZ (ENSMNEG00000040228)	ENSMNEG00000035388	NFIB (ENSMNEG00000039065)	ENSMNEG00000005084	ZDHHC21 (ENSMNEG00000033895)	CER1 (ENSMNEG00000034249)	FREM1 (ENSMNEG00000034773)	TTC39B (ENSMNEG00000029192)	SNAPC3 (ENSMNEG00000002686)	ENSMNEG00000014509	PSIP1 (ENSMNEG00000030633)	CCDC171 (ENSMNEG00000042615)
Pig-tailed macaque	MODERN SPECIES	306	REELD1 (ENSMNEG00000028815)	SLC10A7 (ENSMNEG00000033881)	POU4F2 (ENSMNEG00000036356)	TTC29 (ENSMNEG00000034118)	ENSMNEG00000025155	EDNRA (ENSMNEG00000002624)	TMEM184C (ENSMNEG00000029579)	PRMT9 (ENSMNEG00000031467)	ARHGAP10 (ENSMNEG00000045536)	NR3C2 (ENSMNEG00000042813)	IQCM (ENSMNEG00000034863) #16	DCLK2 (ENSMNEG00000020553) #18	LRBA (ENSMNEG00000021813) #19	MAB21L2 (ENSMNEG00000002873) #21	ENSMNEG00000008812	ENSMNEG00000037276 #22	SH3D19 (ENSMNEG00000039541) #23	PRSS48 (ENSMNEG00000041329) #25	FHIP1A (ENSMNEG00000036401) #26	GATB (ENSMNEG00000040147) #27	FBXW7 (ENSMNEG00000034815) #30	TMEM154 (ENSMNEG00000043952) #31	TIGD4 (ENSMNEG00000019365) #32	ARFIP1 (ENSMNEG00000032244) #33	FHDC1 (ENSMNEG00000041726) #34	ENSMNEG00000028849	ENSMNEG00000020352	TRIM2 (ENSMNEG00000045339) #36	ENSMNEG00000028298	MND1 (ENSMNEG00000045163) #37	TMEM131L (ENSMNEG00000032766)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT00940000153314.a.a.l.b	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.a.b.d.b	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000161627.a.b.b.b.b.a.b.b	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000153311.a.b.a.fb.a.a.a	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b
Rhesus	MODERN SPECIES	15	ENSMMUG00000062288	EDNRA (ENSMMUG00000003659)	ENSMMUG00000063624	TMEM184C (ENSMMUG00000004977)	PRMT9 (ENSMMUG00000004979)	ARHGAP10 (ENSMMUG00000014953)	NR3C2 (ENSMMUG00000014955)	ENSMMUG00000056077	ENSMMUG00000062670	IQCM (ENSMMUG00000047563) #16	DCLK2 (ENSMMUG00000002211) #18	LRBA (ENSMMUG00000002212) #19	MAB21L2 (ENSMMUG00000039441) #21	ENSMMUG00000059101	ENSMMUG00000030101	RPS3A (ENSMMUG00000002676) #22	ENSMMUG00000059421	SH3D19 (ENSMMUG00000006026) #23	PRSS48 (ENSMMUG00000009680) #25	FHIP1A (ENSMMUG00000041800) #26	GATB (ENSMMUG00000011048) #27	FBXW7 (ENSMMUG00000020330) #30	ENSMMUG00000064587	ENSMMUG00000050880	TMEM154 (ENSMMUG00000039094) #31	ENSMMUG00000063665	ARFIP1 (ENSMMUG00000018490) #33	FHDC1 (ENSMMUG00000018493) #34	ENSMMUG00000065105	ENSMMUG00000039869	TMEM131L (ENSMMUG00000009001)
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000049451	RPL5 (ENSMFAG00000033619)	EVI5 (ENSMFAG00000003592)	ENSMFAG00000044701	ENSMFAG00000061073	GFI1 (ENSMFAG00000045801)	RPAP2 (ENSMFAG00000031837)	GLMN (ENSMFAG00000035560) #14	BTBD8 (ENSMFAG00000003189)	EPHX4 (ENSMFAG00000035355)	BRDT (ENSMFAG00000044939)	ENSMFAG00000047645	TGFBR3 (ENSMFAG00000002239)	ENSMFAG00000000474	ENSMFAG00000003649	ENSMFAG00000048501 #22	ENSMFAG00000060879	ENSMFAG00000062421	ZNF644 (ENSMFAG00000033902)	ENSMFAG00000047958	ENSMFAG00000064076	ENSMFAG00000062129	BARHL2 (ENSMFAG00000051984)	ENSMFAG00000062941	ENSMFAG00000057050	ZNF326 (ENSMFAG00000044308)	LRRC8D (ENSMFAG00000062678)	ENSMFAG00000051015	LRRC8C (ENSMFAG00000031732)	LRRC8B (ENSMFAG00000026599)	ENSMFAG00000035480
Crab-eating macaque	MODERN SPECIES	15	TTC29 (ENSMFAG00000046354)	ENSMFAG00000059767	EDNRA (ENSMFAG00000033903)	TMEM184C (ENSMFAG00000039107)	PRMT9 (ENSMFAG00000033194)	ARHGAP10 (ENSMFAG00000039963)	NR3C2 (ENSMFAG00000033681)	IQCM (ENSMFAG00000045917) #16	ENSMFAG00000049000	ENSMFAG00000057521	DCLK2 (ENSMFAG00000001654) #18	ENSMFAG00000053094	LRBA (ENSMFAG00000003797) #19	MAB21L2 (ENSMFAG00000015102) #21	ENSMFAG00000038836	ENSMFAG00000037658 #22	ENSMFAG00000062741	SH3D19 (ENSMFAG00000032402) #23	PRSS48 (ENSMFAG00000041886) #25	FHIP1A (ENSMFAG00000035212) #26	GATB (ENSMFAG00000045472) #27	FBXW7 (ENSMFAG00000045981) #30	TMEM154 (ENSMFAG00000003415) #31	ENSMFAG00000061648	TIGD4 (ENSMFAG00000007745) #32	ARFIP1 (ENSMFAG00000003342) #33	FHDC1 (ENSMFAG00000040830) #34	FKBP1C (ENSMFAG00000029622)	TRIM2 (ENSMFAG00000033003) #36	MND1 (ENSMFAG00000037778) #37	TMEM131L (ENSMFAG00000002070)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT00940000153314.a.a.l.b	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00390000006095.t	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000153377.B.f	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37
Olive baboon	MODERN SPECIES	13	REELD1 (ENSPANG00000019816)	SLC10A7 (ENSPANG00000019495)	POU4F2 (ENSPANG00000045314)	TTC29 (ENSPANG00000004758)	ENSPANG00000038735	EDNRA (ENSPANG00000006372)	TMEM184C (ENSPANG00000005233)	PRMT9 (ENSPANG00000019539)	ARHGAP10 (ENSPANG00000025442)	NR3C2 (ENSPANG00000004756)	IQCM (ENSPANG00000008512) #16	ENSPANG00000019538 #18	MAB21L2 (ENSPANG00000044410) #21	LRBA (ENSPANG00000018911) #19	ENSPANG00000032704	RPS3A (ENSPANG00000030994) #22	PRSS48 (ENSPANG00000021582) #25	ENSPANG00000041232	SH3D19 (ENSPANG00000013406) #23	FHIP1A (ENSPANG00000017864) #26	GATB (ENSPANG00000024036) #27	FBXW7 (ENSPANG00000025492) #30	ENSPANG00000049897	TMEM154 (ENSPANG00000016249) #31	TIGD4 (ENSPANG00000002290) #32	ARFIP1 (ENSPANG00000018884) #33	FHDC1 (ENSPANG00000008667) #34	ENSPANG00000043803	TRIM2 (ENSPANG00000023881) #36	MND1 (ENSPANG00000006139) #37	TMEM131L (ENSPANG00000006232)
Cercopithecinae_d	ANCESTRAL SPECIES	21	ENSGT00940000160339	ENSGT00390000008611	ENSGT00940000153314.a.a.l.b	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00910000148727	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000003245.i.a	ENSGT00940000154568.q.a.a.b.b	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00390000006095.t	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00500000044916.g.b	ENSGT00940000155128.a.b #34	ENSGT00940000153377.B.f	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413 #37
Drill	MODERN SPECIES	391			TTC29 (ENSMLEG00000029380)	ENSMLEG00000026540	EDNRA (ENSMLEG00000032003)	TMEM184C (ENSMLEG00000040036)	PRMT9 (ENSMLEG00000042508)	ARHGAP10 (ENSMLEG00000038597)	ENSMLEG00000035174	NR3C2 (ENSMLEG00000032090)	IQCM (ENSMLEG00000036248) #16	DCLK2 (ENSMLEG00000032964) #18	MAB21L2 (ENSMLEG00000001807) #21	LRBA (ENSMLEG00000029030) #19	ENSMLEG00000043812	RPS3A (ENSMLEG00000044224) #22	SH3D19 (ENSMLEG00000042981) #23	PRSS48 (ENSMLEG00000031832) #25	ENSMLEG00000042885	FHIP1A (ENSMLEG00000043501) #26	GATB (ENSMLEG00000042135) #27	FBXW7 (ENSMLEG00000035509) #30	TMEM154 (ENSMLEG00000042299) #31	TIGD4 (ENSMLEG00000008774) #32	ARFIP1 (ENSMLEG00000040124) #33	ENSMLEG00000043684	FHDC1 (ENSMLEG00000033276) #34	ENSMLEG00000004649
Sooty mangabey	MODERN SPECIES	575	SLC10A7 (ENSCATG00000038830)	POU4F2 (ENSCATG00000035415)	TTC29 (ENSCATG00000021611)	EDNRA (ENSCATG00000041941)	TMEM184C (ENSCATG00000044287)	PRMT9 (ENSCATG00000025314)	ARHGAP10 (ENSCATG00000029679)	ENSCATG00000029475	NR3C2 (ENSCATG00000031040)	IQCM (ENSCATG00000039219) #16	DCLK2 (ENSCATG00000034887) #18	MAB21L2 (ENSCATG00000015705) #21	ENSCATG00000035565	LRBA (ENSCATG00000036910) #19	ENSCATG00000009094	RPS3A (ENSCATG00000029484) #22	PRSS48 (ENSCATG00000033095) #25	SH3D19 (ENSCATG00000040234) #23	ENSCATG00000016011	FHIP1A (ENSCATG00000043916) #26	GATB (ENSCATG00000034281) #27	FBXW7 (ENSCATG00000040206) #30	TMEM154 (ENSCATG00000034714) #31	TIGD4 (ENSCATG00000023010) #32	ARFIP1 (ENSCATG00000036832) #33	ENSCATG00000025962	FHDC1 (ENSCATG00000041321) #34	ENSCATG00000022750	ENSCATG00000040320	TRIM2 (ENSCATG00000040189) #36	MND1 (ENSCATG00000041976) #37
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	269									ENSANAG00000025883	NR3C2 (ENSANAG00000021076)	IQCM (ENSANAG00000036171) #16	DCLK2 (ENSANAG00000037979) #18	LRBA (ENSANAG00000036178) #19	MAB21L2 (ENSANAG00000031618) #21	ENSANAG00000026622	RPS3A (ENSANAG00000022955) #22	SH3D19 (ENSANAG00000025505) #23	ENSANAG00000020141	PRSS48 (ENSANAG00000023765) #25	FHIP1A (ENSANAG00000031939) #26	GATB (ENSANAG00000020953) #27
Mas night monkey	MODERN SPECIES	1074		SLC25A38 (ENSANAG00000032913)	CX3CR1 (ENSANAG00000035425)	XIRP1 (ENSANAG00000023033)	CSRNP1 (ENSANAG00000031114)	TTC21A (ENSANAG00000035657)	GORASP1 (ENSANAG00000025911)	WDR48 (ENSANAG00000001805)	SCN11A (ENSANAG00000021625)	SCN10A (ENSANAG00000031852)	SCN5A (ENSANAG00000028084)	EXOG (ENSANAG00000025128)	ACVR2B (ENSANAG00000034446)	XYLB (ENSANAG00000033524)	ENSANAG00000031540	ENSANAG00000008213 #22	SLC22A13 (ENSANAG00000029827)	OXSR1 (ENSANAG00000021659)	MYD88 (ENSANAG00000023716)	ENSANAG00000021999	ACAA1 (ENSANAG00000023775)	DLEC1 (ENSANAG00000026994)	ENSANAG00000025014	PLCD1 (ENSANAG00000034450)	VILL (ENSANAG00000023408)	CTDSPL (ENSANAG00000029412)	ITGA9 (ENSANAG00000031547)	GOLGA4 (ENSANAG00000023104)	LRRFIP2 (ENSANAG00000020666)	ENSANAG00000028316	EPM2AIP1 (ENSANAG00000031695)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	624	ZP2 (ENSANAG00000034351)	ENSANAG00000022920	DNAH3 (ENSANAG00000035723)	LYRM1 (ENSANAG00000019455)	DCUN1D3 (ENSANAG00000022919)	REXO5 (ENSANAG00000034379)	ERI2 (ENSANAG00000035452)	ACSM3 (ENSANAG00000032099)	ENSANAG00000026882	ENSANAG00000022834	ACSM5 (ENSANAG00000032548)	PDILT (ENSANAG00000037890)	UMOD (ENSANAG00000028906)	GP2 (ENSANAG00000035235)	GPR139 (ENSANAG00000025906)	ENSANAG00000003708 #22	GPRC5B (ENSANAG00000030958)	IQCK (ENSANAG00000035421)	ENSANAG00000034483	VPS35L (ENSANAG00000028975)	CCP110 (ENSANAG00000020487)	GDE1 (ENSANAG00000033564)	TMC5 (ENSANAG00000033685)	CLEC19A (ENSANAG00000022307)	ENSANAG00000025959	SYT17 (ENSANAG00000035664)	ITPRIPL2 (ENSANAG00000007478) ##21	COQ7 (ENSANAG00000023469)	TMC7 (ENSANAG00000035990)	ENSANAG00000033039	SMG1 (ENSANAG00000035898)
Mas night monkey	MODERN SPECIES	273	TIMM9 (ENSANAG00000024267)	TOMM20L (ENSANAG00000022063)	ARID4A (ENSANAG00000037559)	PSMA3 (ENSANAG00000034210)	ACTR10 (ENSANAG00000036574)	ARMH4 (ENSANAG00000028979)	SLC35F4 (ENSANAG00000023234)	ENSANAG00000036820	CCDC198 (ENSANAG00000022556)	ENSANAG00000011004	NAA30 (ENSANAG00000025690)	ENSANAG00000019497	AP5M1 (ENSANAG00000027663)	EXOC5 (ENSANAG00000038073)	OTX2 (ENSANAG00000032626)	ENSANAG00000030036 #22	TMEM260 (ENSANAG00000038375)	ENSANAG00000016925	PELI2 (ENSANAG00000022899)	KTN1 (ENSANAG00000031174)	TBPL2 (ENSANAG00000023060)	ATG14 (ENSANAG00000024345)	DLGAP5 (ENSANAG00000035817)	LGALS3 (ENSANAG00000020743)	ENSANAG00000037823	SOCS4 (ENSANAG00000004973)	WDHD1 (ENSANAG00000033347)	GCH1 (ENSANAG00000026548)	SAMD4A (ENSANAG00000036651)	CGRRF1 (ENSANAG00000036449)	GMFB (ENSANAG00000033336)
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Marmoset	DUPLICATION
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	21	ANO2 (ENSCJAG00000000606)	NTF3 (ENSCJAG00000000605)	KCNA5 (ENSCJAG00000068399)	KCNA1 (ENSCJAG00000068371)	KCNA6 (ENSCJAG00000061475)	ENSCJAG00000075610	ENSCJAG00000001647	ENSCJAG00000001628	FGF6 (ENSCJAG00000001613)	FGF23 (ENSCJAG00000069632)	TIGAR (ENSCJAG00000040111)	CCND2 (ENSCJAG00000001593)	ENSCJAG00000001586	ENSCJAG00000021822	PARP11 (ENSCJAG00000001570)	ENSCJAG00000082222 #22	CRACR2A (ENSCJAG00000018917)	ENSCJAG00000063173	PRMT8 (ENSCJAG00000018891)	ENSCJAG00000018882	TEAD4 (ENSCJAG00000018796)	ENSCJAG00000085073	FOXM1 (ENSCJAG00000018781)	RHNO1 (ENSCJAG00000018790)	TEX52 (ENSCJAG00000018779)	NRIP2 (ENSCJAG00000083523)	ITFG2 (ENSCJAG00000018765)	FKBP4 (ENSCJAG00000018746)	ENSCJAG00000006744	ENSCJAG00000076932	ENSCJAG00000064493
Marmoset	MODERN SPECIES	5	SLC9A2 (ENSCJAG00000008193)	MFSD9 (ENSCJAG00000069979)	TMEM182 (ENSCJAG00000043937)	POU3F3 (ENSCJAG00000046410)	ENSCJAG00000008156	GPR45 (ENSCJAG00000022736)	TGFBRAP1 (ENSCJAG00000008126)	C2orf49 (ENSCJAG00000008106)	FHL2 (ENSCJAG00000008087)	ENSCJAG00000041815	NCK2 (ENSCJAG00000008073)	ENSCJAG00000069536	ENSCJAG00000074180	ENSCJAG00000085491	ENSCJAG00000085453	ENSCJAG00000074789 #22	ENSCJAG00000071602	ENSCJAG00000013467	ENSCJAG00000062858	ST6GAL2 (ENSCJAG00000039769)	SLC5A7 (ENSCJAG00000042583)	ENSCJAG00000072493	BUB1 (ENSCJAG00000013468)	ENSCJAG00000047282	ENSCJAG00000072970	MTLN (ENSCJAG00000069946)	NPHP1 (ENSCJAG00000040374)	ENSCJAG00000071887	SOWAHC (ENSCJAG00000017753)	SEPTIN10 (ENSCJAG00000017754)	ENSCJAG00000067359
Marmoset	MODERN SPECIES	15	SLC10A7 (ENSCJAG00000034934)	TTC29 (ENSCJAG00000002445)	ENSCJAG00000079464	EDNRA (ENSCJAG00000002424)	TMEM184C (ENSCJAG00000002418)	PRMT9 (ENSCJAG00000002411)	ENSCJAG00000085835	ARHGAP10 (ENSCJAG00000002375)	NR3C2 (ENSCJAG00000002360)	IQCM (ENSCJAG00000002355) #16	DCLK2 (ENSCJAG00000002343) #18	MAB21L2 (ENSCJAG00000077403) #21	LRBA (ENSCJAG00000002279) #19	ENSCJAG00000021814	ENSCJAG00000044805	ENSCJAG00000002268 #22	PRSS48 (ENSCJAG00000002204) #25	SH3D19 (ENSCJAG00000002215) #23	ENSCJAG00000070360	ENSCJAG00000072258	FHIP1A (ENSCJAG00000002164) #26	GATB (ENSCJAG00000002147) #27	FBXW7 (ENSCJAG00000002101) #30	ENSCJAG00000063252	TMEM154 (ENSCJAG00000043561) #31	TIGD4 (ENSCJAG00000021812) #32	ENSCJAG00000002085	ARFIP1 (ENSCJAG00000002029) #33	FHDC1 (ENSCJAG00000075233) #34	ENSCJAG00000002016	TRIM2 (ENSCJAG00000002004) #36
Cebidae_a	ANCESTRAL SPECIES	49	ENSGT00940000154978.h.a	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201.g.b	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00950000184824	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00950000182987.c.a.a.u.a.b	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00940000154257.i.a.a	ENSGT00490000043413.a.a.a #37	ENSGT00530000063614.a.b	ENSGT00940000156323
Capuchin	MODERN SPECIES	299	MARVELD1 (ENSCCAG00000008149)	AVPI1 (ENSCCAG00000023548)	PI4K2A (ENSCCAG00000027223)	MORN4 (ENSCCAG00000037340)	ANKRD2 (ENSCCAG00000017610)	UBTD1 (ENSCCAG00000033365)	MMS19 (ENSCCAG00000028150)	ZDHHC16 (ENSCCAG00000031734)	EXOSC1 (ENSCCAG00000023986)	PGAM1 (ENSCCAG00000033993)	ENSCCAG00000024088	ARHGAP19 (ENSCCAG00000025323)	SLIT1 (ENSCCAG00000023960)	ENSCCAG00000034650	LCOR (ENSCCAG00000022922)	RPS3A (ENSCCAG00000007510) #22	PIK3AP1 (ENSCCAG00000012039)	TM9SF3 (ENSCCAG00000034997)	TLL2 (ENSCCAG00000024393)	OPALIN (ENSCCAG00000022700)	DNTT (ENSCCAG00000037102)	BLNK (ENSCCAG00000037036)	CCNJ (ENSCCAG00000034523)	ENSCCAG00000032261
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	73	SPATA5L1 (ENSSBOG00000022681)	C15orf48 (ENSSBOG00000032988)	SLC30A4 (ENSSBOG00000022298)	BLOC1S6 (ENSSBOG00000030222)	SQOR (ENSSBOG00000027259)	SEMA6D (ENSSBOG00000028001)	ENSSBOG00000022686	SLC24A5 (ENSSBOG00000023885)	MYEF2 (ENSSBOG00000029634)	CTXN2 (ENSSBOG00000013318)	SLC12A1 (ENSSBOG00000022213)	ENSSBOG00000034018	FBN1 (ENSSBOG00000024272)	CEP152 (ENSSBOG00000031306)	ENSSBOG00000036086	ENSSBOG00000011389 #22	SHC4 (ENSSBOG00000011457)	SECISBP2L (ENSSBOG00000024354)	COPS2 (ENSSBOG00000024019)	GALK2 (ENSSBOG00000025258)	FGF7 (ENSSBOG00000029304)	FAM227B (ENSSBOG00000021531)	DTWD1 (ENSSBOG00000009376)	ENSSBOG00000020229	ATP8B4 (ENSSBOG00000034767)	ENSSBOG00000033334	SLC27A2 (ENSSBOG00000018319)	HDC (ENSSBOG00000029959)	GABPB1 (ENSSBOG00000023162)	USP8 (ENSSBOG00000028249)	USP50 (ENSSBOG00000023047)
Bolivian squirrel monkey	MODERN SPECIES	69	KDM4C (ENSSBOG00000025118)	ENSSBOG00000031698	ENSSBOG00000030559	PTPRD (ENSSBOG00000020960)	ENSSBOG00000033909	ENSSBOG00000019643	TYRP1 (ENSSBOG00000028887)	LURAP1L (ENSSBOG00000023028)	MPDZ (ENSSBOG00000032969)	NFIB (ENSSBOG00000032376)	ZDHHC21 (ENSSBOG00000031063)	CER1 (ENSSBOG00000015623)	FREM1 (ENSSBOG00000027449)	HPF1 (ENSSBOG00000025298)	TTC39B (ENSSBOG00000035178)	ENSSBOG00000033785 #22	ENSSBOG00000035820	PSIP1 (ENSSBOG00000033737)	ENSSBOG00000031033	CCDC171 (ENSSBOG00000026669)	ENSSBOG00000028687	BNC2 (ENSSBOG00000023250)	CNTLN (ENSSBOG00000034763)	SH3GL2 (ENSSBOG00000032645)	ENSSBOG00000034943	ADAMTSL1 (ENSSBOG00000023299)	SAXO1 (ENSSBOG00000026964)	ENSSBOG00000008170	ENSSBOG00000031312	HAUS6 (ENSSBOG00000026878)	PLIN2 (ENSSBOG00000030779)
Bolivian squirrel monkey	MODERN SPECIES	68	POU4F2 (ENSSBOG00000029758)	TTC29 (ENSSBOG00000018366)	EDNRA (ENSSBOG00000034230)	ENSSBOG00000024941	PRMT9 (ENSSBOG00000030455)	ARHGAP10 (ENSSBOG00000026002)	NR3C2 (ENSSBOG00000020377)	ENSSBOG00000023349	IQCM (ENSSBOG00000032471) #16	DCLK2 (ENSSBOG00000032668) #18	MAB21L2 (ENSSBOG00000013535) #21	ENSSBOG00000032936	ENSSBOG00000031656	ENSSBOG00000034372	LRBA (ENSSBOG00000032154) #19	ENSSBOG00000023852 #22	PRSS48 (ENSSBOG00000035708) #25	SH3D19 (ENSSBOG00000029208) #23	FHIP1A (ENSSBOG00000025309) #26	GATB (ENSSBOG00000022495) #27	ENSSBOG00000013483	FBXW7 (ENSSBOG00000028715) #30	TMEM154 (ENSSBOG00000020640) #31	TIGD4 (ENSSBOG00000019445) #32	ENSSBOG00000034828	ARFIP1 (ENSSBOG00000029200) #33	ENSSBOG00000022577	FHDC1 (ENSSBOG00000032341) #34	ENSSBOG00000019364	ENSSBOG00000019005	TRIM2 (ENSSBOG00000008537) #36
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Hedgehog	MODERN SPECIES	12209																RPS3A (ENSEEUG00000004994) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000153169.A.b.b.a.a.a.b.l	ENSGT00940000159336	ENSGT00550000074855	ENSGT00390000005270	ENSGT00940000155328.cb	ENSGT00940000154910.b.b	ENSGT00390000006367.d	ENSGT00950000182922.a.a.a.b.a.b.a.b.a	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l.a	ENSGT00950000183194.a.b	ENSGT00940000158780	ENSGT00390000018433.s.b #22	ENSGT00390000000221.A	ENSGT00940000157223	ENSGT00940000155456	ENSGT00940000162521	ENSGT00940000154675	ENSGT00390000005097	ENSGT00940000154429.w.b	ENSGT00530000063722.b	ENSGT00530000063822.a.b	ENSGT00390000003145	ENSGT00950000183011.c.a.b	ENSGT00940000154380.b	ENSGT00940000155385	ENSGT00950000183017.b.a	ENSGT00940000157939
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000153169.A.b.b.a.a.a.b.l	ENSGT00940000159336	ENSGT00550000074855	ENSGT00390000005270	ENSGT00940000155328.cb	ENSGT00940000154910.b.b	ENSGT00390000006367.d	ENSGT00950000182922.a.a.a.b.a.b.a.b.a	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l.a	ENSGT00950000183194.a.b	ENSGT00940000158780	ENSGT00390000018433.s.b #22	ENSGT00390000000221.A	ENSGT00940000157223	ENSGT00940000155456	ENSGT00940000162521	ENSGT00940000154675	ENSGT00390000005097	ENSGT00940000154429.w.b	ENSGT00530000063722.b	ENSGT00530000063822.a.b	ENSGT00390000003145	ENSGT00950000183011.c.a.b	ENSGT00940000154380.b	ENSGT00940000155385	ENSGT00950000183017.b.a	ENSGT00940000157939
Narwhal	MODERN SPECIES	314	ENSMMNG00015021034	PDE3B (ENSMMNG00015020953)	PSMA1 (ENSMMNG00015020868)	COPB1 (ENSMMNG00015020824)	ENSMMNG00015020802	SPON1 (ENSMMNG00015020782)	FAR1 (ENSMMNG00015020761)	ENSMMNG00015020752	PTH (ENSMMNG00015020742)	BTBD10 (ENSMMNG00015020698)	BMAL1 (ENSMMNG00015020613)	RASSF10 (ENSMMNG00015020589)	TEAD1 (ENSMMNG00015020545)	PARVA (ENSMMNG00015020501)	MICAL2 (ENSMMNG00015020388)	ENSMMNG00015020342 #22	DKK3 (ENSMMNG00015020327)	USP47 (ENSMMNG00015020112)	ENSMMNG00015020000	ENSMMNG00015019981	GALNT18 (ENSMMNG00015019950)	ZBED5 (ENSMMNG00015019924)	EIF4G2 (ENSMMNG00015019778)	CTR9 (ENSMMNG00015019690)	ENSMMNG00015019676	IRAG1 (ENSMMNG00015019550)	LYVE1 (ENSMMNG00015019456)	RNF141 (ENSMMNG00015019418)	AMPD3 (ENSMMNG00015019282)	ADM (ENSMMNG00015019215)	SBF2 (ENSMMNG00015019075)
Vaquita	MODERN SPECIES	19	ENSPSNG00000005706	PDE3B (ENSPSNG00000005620)	PSMA1 (ENSPSNG00000005548)	COPB1 (ENSPSNG00000005475)	ENSPSNG00000005427	SPON1 (ENSPSNG00000005398)	FAR1 (ENSPSNG00000005352)	ENSPSNG00000005319	PTH (ENSPSNG00000005298)	BTBD10 (ENSPSNG00000005248)	BMAL1 (ENSPSNG00000005165)	RASSF10 (ENSPSNG00000005115)	ENSPSNG00000005077	PARVA (ENSPSNG00000005015)	MICAL2 (ENSPSNG00000004843)	ENSPSNG00000004681 #22	DKK3 (ENSPSNG00000004657)	USP47 (ENSPSNG00000004502)	ENSPSNG00000004358	GALNT18 (ENSPSNG00000004318)	ZBED5 (ENSPSNG00000004281)	EIF4G2 (ENSPSNG00000004235)	CTR9 (ENSPSNG00000004180)	ENSPSNG00000004144	IRAG1 (ENSPSNG00000004067)	LYVE1 (ENSPSNG00000017631)	RNF141 (ENSPSNG00000017558)	AMPD3 (ENSPSNG00000017522)	ADM (ENSPSNG00000017463)	SBF2 (ENSPSNG00000017404)	SWAP70 (ENSPSNG00000017297)
Pecora	ANCESTRAL SPECIES	14	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Yarkand deer	MODERN SPECIES	19	APCDD1 (ENSCHYG00000022475)	ENSCHYG00000022539	VAPA (ENSCHYG00000022578)	PPP4R1 (ENSCHYG00000022849)	RALBP1 (ENSCHYG00000022911)	TWSG1 (ENSCHYG00000022972)	ANKRD12 (ENSCHYG00000023012)	ENSCHYG00000023192	MTCL1 (ENSCHYG00000023220)	RAB12 (ENSCHYG00000023329)	PTPRM (ENSCHYG00000023397)	LRRC30 (ENSCHYG00000024222)	LAMA1 (ENSCHYG00000024245)	ARHGAP28 (ENSCHYG00000024509)	EPB41L3 (ENSCHYG00000024994)	ENSCHYG00000025521 #22	ZBTB14 (ENSCHYG00000025527)	AKAIN1 (ENSCHYG00000025549)	ENSCHYG00000025565	ENSCHYG00000025583	ENSCHYG00000025600	DLGAP1 (ENSCHYG00000025662)	TGIF1 (ENSCHYG00000025940)	MYL12B (ENSCHYG00000025995)	ENSCHYG00000026009	MYOM1 (ENSCHYG00000014067)	ENSCHYG00000014825	ENSCHYG00000014880	EMILIN2 (ENSCHYG00000015216)	SMCHD1 (ENSCHYG00000015325)	NDC80 (ENSCHYG00000016070)
Percora_a	ANCESTRAL SPECIES	17	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Bovidae	DUPLICATION
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00390000018433.s.b.jb.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Bovinae	ANCESTRAL SPECIES	13	ENSGT00940000156063	ENSGT00940000154978.w.a	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Bos	ANCESTRAL SPECIES	14	ENSGT00940000156063	ENSGT00940000154978.w.a	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Bos_a	ANCESTRAL SPECIES	68	ENSGT00940000156063	ENSGT00940000154978.x	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Wild yak	MODERN SPECIES	1411													DCLK2 (ENSBMUG00000020272) #18	LRBA (ENSBMUG00000020346) #19	MAB21L2 (ENSBMUG00000020365) #21	RPS3A (ENSBMUG00000020374) #22	SH3D19 (ENSBMUG00000020463) #23	PRSS48 (ENSBMUG00000020508) #25
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000154978.w.a	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00390000018433.s.b.kb #22	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Hybrid Bos Indicus	MODERN SPECIES	8	ENSBIXG00005008414	POU4F2 (ENSBIXG00005008406)	TTC29 (ENSBIXG00005008379)	EDNRA (ENSBIXG00005008325)	TMEM184C (ENSBIXG00005008291)	PRMT9 (ENSBIXG00005008281)	ARHGAP10 (ENSBIXG00005008218)	ENSBIXG00005008146	NR3C2 (ENSBIXG00005008106)	ENSBIXG00005008005	ENSBIXG00005007998	IQCM (ENSBIXG00005029236) #16	DCLK2 (ENSBIXG00005029213) #18	LRBA (ENSBIXG00005001814) #19	MAB21L2 (ENSBIXG00005005193) #21	RPS3A (ENSBIXG00005005190) #22	SH3D19 (ENSBIXG00005029087) #23	ENSBIXG00005028995 #25	PRSS48 (ENSBIXG00005028978) #25	FHIP1A (ENSBIXG00005002163) #26	GATB (ENSBIXG00005005051) #27	FBXW7 (ENSBIXG00005002309) #30	ENSBIXG00005002357	ENSBIXG00005028668 #31	TIGD4 (ENSBIXG00005002381) #32	ARFIP1 (ENSBIXG00005004937) #33	ENSBIXG00005007791	FHDC1 (ENSBIXG00005028377) #34	TRIM2 (ENSBIXG00005028287) #36	TMEM131L (ENSBIXG00005028029)	TLR2 (ENSBIXG00005027951)
Caprinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.jb.a #22
Goat	MODERN SPECIES	9	ENSCHIG00000018879	ENSCHIG00000025874	TEX101 (ENSCHIG00000003537)	CD177 (ENSCHIG00000018582)	ENSCHIG00000023941	ENSCHIG00000021407	ENSCHIG00000012997	ENSCHIG00000015831	ENSCHIG00000006753	LYPD4 (ENSCHIG00000022395)	DMRTC2 (ENSCHIG00000020158)	ENSCHIG00000025321	CD79A (ENSCHIG00000013630)	ARHGEF1 (ENSCHIG00000022244)	ENSCHIG00000027270	ENSCHIG00000008355 #22	RABAC1 (ENSCHIG00000023419)	ATP1A3 (ENSCHIG00000020539)	GRIK5 (ENSCHIG00000025382)	ZNF574 (ENSCHIG00000009605)	POU2F2 (ENSCHIG00000025522)	DEDD2 (ENSCHIG00000020747)	ZNF526 (ENSCHIG00000018756)	GSK3A (ENSCHIG00000027180)	ERF (ENSCHIG00000019624)	CIC (ENSCHIG00000015534)	PAFAH1B3 (ENSCHIG00000019643)	ENSCHIG00000007871	PRR19 (ENSCHIG00000022284)	TMEM145 (ENSCHIG00000003376)	MEGF8 (ENSCHIG00000015019)
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00390000018433.s.b.jb.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.jb.b #22
American bison	MODERN SPECIES	3069				TLN2 (ENSBBBG00000007650)	VPS13C (ENSBBBG00000002901)	RORA (ENSBBBG00000013770)	ICE2 (ENSBBBG00000013793)	ENSBBBG00000008447	FOXB1 (ENSBBBG00000002959)	ENSBBBG00000013838	NR3C2 (ENSBBBG00000002997)	IQCM (ENSBBBG00000003010) #16	DCLK2 (ENSBBBG00000003070) #18	MAB21L2 (ENSBBBG00000002892) #21	LRBA (ENSBBBG00000003153) #19	RPS3A (ENSBBBG00000003169) #22	ENSBBBG00000003199 #25	SH3D19 (ENSBBBG00000003232) #23	FHIP1A (ENSBBBG00000014291) #26	GATB (ENSBBBG00000014330) #27	FBXW7 (ENSBBBG00000003325) #30	TMEM154 (ENSBBBG00000014446) #31	TIGD4 (ENSBBBG00000014451) #32	ARFIP1 (ENSBBBG00000014497) #33	FHDC1 (ENSBBBG00000014518) #34	TRIM2 (ENSBBBG00000007493) #36	MND1 (ENSBBBG00000014564) #37	TMEM131L (ENSBBBG00000003574)	TLR2 (ENSBBBG00000014757)	RNF175 (ENSBBBG00000003583)	SFRP2 (ENSBBBG00000014774)
Caprinae	ANCESTRAL SPECIES	17	ENSGT00940000156063	ENSGT00940000154978.y.b	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000167877	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.b #22	ENSGT00940000155694 #23	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a	ENSGT00940000164895
Goat	MODERN SPECIES	8	ZNF827 (ENSCHIG00000023405)	ENSCHIG00000010334	SLC10A7 (ENSCHIG00000008543)	POU4F2 (ENSCHIG00000012332)	TTC29 (ENSCHIG00000025715)	EDNRA (ENSCHIG00000019737)	ENSCHIG00000008113	PRMT9 (ENSCHIG00000011275)	ARHGAP10 (ENSCHIG00000002829)	ENSCHIG00000021047	ENSCHIG00000024151	IQCM (ENSCHIG00000023127) #16	DCLK2 (ENSCHIG00000010393) #18	LRBA (ENSCHIG00000020734) #19	MAB21L2 (ENSCHIG00000007330) #21	ENSCHIG00000016445 #22	SH3D19 (ENSCHIG00000011594) #23	FHIP1A (ENSCHIG00000011836) #26	GATB (ENSCHIG00000020111) #27	FBXW7 (ENSCHIG00000024373) #30	TMEM154 (ENSCHIG00000026757) #31	TIGD4 (ENSCHIG00000022621) #32	ARFIP1 (ENSCHIG00000015084) #33	FHDC1 (ENSCHIG00000011413) #34	TRIM2 (ENSCHIG00000020210) #36	MND1 (ENSCHIG00000016830) #37	TMEM131L (ENSCHIG00000020096)	TLR2 (ENSCHIG00000025899)	RNF175 (ENSCHIG00000021987)	SFRP2 (ENSCHIG00000022955)	PLRG1 (ENSCHIG00000014074)
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.kb #22
Caprinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.kb #22
Goat	MODERN SPECIES	23	FEZF1 (ENSCHIG00000012204)	CADPS2 (ENSCHIG00000022820)	SLC13A1 (ENSCHIG00000014530)	IQUB (ENSCHIG00000021401)	NDUFA5 (ENSCHIG00000014906)	ASB15 (ENSCHIG00000018758)	LMOD2 (ENSCHIG00000023924)	WASL (ENSCHIG00000016281)	HYAL4 (ENSCHIG00000003866)	ENSCHIG00000020009	ENSCHIG00000020486	ENSCHIG00000015094	TMEM229A (ENSCHIG00000011201)	GPR37 (ENSCHIG00000020618)	POT1 (ENSCHIG00000014866)	ENSCHIG00000011972 #22	ENSCHIG00000021887	ENSCHIG00000009077	ZNF800 (ENSCHIG00000018562)	GCC1 (ENSCHIG00000013724)	ARF5 (ENSCHIG00000018906)	FSCN3 (ENSCHIG00000011966)	PAX4 (ENSCHIG00000014419)	LRRC4 (ENSCHIG00000006081)	SND1 (ENSCHIG00000023390)	LEP (ENSCHIG00000019616)	RBM28 (ENSCHIG00000014146)	PRRT4 (ENSCHIG00000019622)	ENSCHIG00000017791	IMPDH1 (ENSCHIG00000017941)	HILPDA (ENSCHIG00000009991)
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.kb #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.kb #22
Bos_b	ANCESTRAL SPECIES	13	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978.w.a	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT00390000018433.s.b.kb #22	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b.jb.a #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323
Cow	MODERN SPECIES	8	ZNF827 (ENSBTAG00000012738)	LSM6 (ENSBTAG00000014060)	REELD1 (ENSBTAG00000054105)	SLC10A7 (ENSBTAG00000034522)	POU4F2 (ENSBTAG00000005648)	TTC29 (ENSBTAG00000004167)	ENSBTAG00000049121	EDNRA (ENSBTAG00000013674)	TMEM184C (ENSBTAG00000010376)	PRMT9 (ENSBTAG00000010381)	ARHGAP10 (ENSBTAG00000002531)	NR3C2 (ENSBTAG00000027182)	DCLK2 (ENSBTAG00000008098) #18	MAB21L2 (ENSBTAG00000047924) #21	LRBA (ENSBTAG00000018546) #19	RPS3A (ENSBTAG00000009908) #22	PRSS48 (ENSBTAG00000004633) #25	SH3D19 (ENSBTAG00000016813) #23	FHIP1A (ENSBTAG00000025263) #26	GATB (ENSBTAG00000013914) #27	FBXW7 (ENSBTAG00000007953) #30	ENSBTAG00000048983 #31	ARFIP1 (ENSBTAG00000008438) #33	FHDC1 (ENSBTAG00000043963) #34	TRIM2 (ENSBTAG00000008816) #36	MND1 (ENSBTAG00000000281) #37	TMEM131L (ENSBTAG00000016625)	TLR2 (ENSBTAG00000008008)	RNF175 (ENSBTAG00000019426)	SFRP2 (ENSBTAG00000018563)	DCHS2 (ENSBTAG00000024545)
Bos_a	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b.kb #22
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	69	ENSBGRG00000010944	IL1RAPL1 (ENSBGRG00000011049)	ENSBGRG00000011327	ENSBGRG00000011440	PPP4R3C (ENSBGRG00000011595)	ENSBGRG00000011648	MAGEB18 (ENSBGRG00000011730)	ENSBGRG00000011753	ENSBGRG00000011790	ARX (ENSBGRG00000011822)	POLA1 (ENSBGRG00000011903)	ENSBGRG00000012409	PCYT1B (ENSBGRG00000012447)	PDK3 (ENSBGRG00000012643)	ENSBGRG00000013003	ENSBGRG00000013035 #22	ENSBGRG00000013049	ENSBGRG00000013098	ENSBGRG00000013130	ENSBGRG00000013264	EIF2S3B (ENSBGRG00000013285)	KLHL15 (ENSBGRG00000007139)	CXorf58 (ENSBGRG00000007185)	APOO (ENSBGRG00000007291)	SAT1 (ENSBGRG00000007508)	ACOT9 (ENSBGRG00000007829)	PRDX4 (ENSBGRG00000008322)	PTCHD1 (ENSBGRG00000008455)	ENSBGRG00000008530	ENSBGRG00000008641	PHEX (ENSBGRG00000008681)
Domestic yak	MODERN SPECIES	7	POU4F2 (ENSBGRG00000008809)	TTC29 (ENSBGRG00000008877)	ENSBGRG00000009257	EDNRA (ENSBGRG00000009303)	ENSBGRG00000009466	TMEM184C (ENSBGRG00000010666)	PRMT9 (ENSBGRG00000010736)	ENSBGRG00000010968	ARHGAP10 (ENSBGRG00000011004)	NR3C2 (ENSBGRG00000011166)	IQCM (ENSBGRG00000011758) #16	DCLK2 (ENSBGRG00000011859) #18	LRBA (ENSBGRG00000012411) #19	ENSBGRG00000012712	MAB21L2 (ENSBGRG00000012737) #21	ENSBGRG00000012777 #22	ENSBGRG00000012970	SH3D19 (ENSBGRG00000013051) #23	ENSBGRG00000014152 #25	PRSS48 (ENSBGRG00000014226) #25	FHIP1A (ENSBGRG00000014393) #26	GATB (ENSBGRG00000014535) #27	FBXW7 (ENSBGRG00000015456) #30	TMEM154 (ENSBGRG00000015831) #31	TIGD4 (ENSBGRG00000015927) #32	ARFIP1 (ENSBGRG00000015983) #33	FHDC1 (ENSBGRG00000016413) #34	TRIM2 (ENSBGRG00000016560) #36	MND1 (ENSBGRG00000016798) #37	TMEM131L (ENSBGRG00000017247)	TLR2 (ENSBGRG00000017549)
Suina	ANCESTRAL SPECIES	22	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00940000156432.a	ENSGT00940000162999
Pig	MODERN SPECIES	16	ENSSSCG00000062405	TTC29 (ENSSSCG00000040272)	EDNRA (ENSSSCG00000009031)	TMEM184C (ENSSSCG00000030044)	PRMT9 (ENSSSCG00000009030)	ARHGAP10 (ENSSSCG00000009029)	ENSSSCG00000043522	NR3C2 (ENSSSCG00000037766)	ENSSSCG00000040704	IQCM (ENSSSCG00000035623) #16	DCLK2 (ENSSSCG00000009023) #18	MAB21L2 (ENSSSCG00000052676) #21	ENSSSCG00000058219	LRBA (ENSSSCG00000009021) #19	ENSSSCG00000048819	RPS3A (ENSSSCG00000009019) #22	PRSS48 (ENSSSCG00000009017) #25	SH3D19 (ENSSSCG00000009018) #23	ENSSSCG00000057111	ENSSSCG00000053923	FHIP1A (ENSSSCG00000020717) #26	ENSSSCG00000009015 #27	ENSSSCG00000054992 #27	ENSSSCG00000056838	FBXW7 (ENSSSCG00000020879) #30	TMEM154 (ENSSSCG00000009012) #31	TIGD4 (ENSSSCG00000038186) #32	ARFIP1 (ENSSSCG00000009010) #33	FHDC1 (ENSSSCG00000009011) #34	TRIM2 (ENSSSCG00000029200) #36	MND1 (ENSSSCG00000009009) #37
Chacoan peccary	MODERN SPECIES	120	C4orf51 (ENSCWAG00000010248)	ZNF827 (ENSCWAG00000010322)	LSM6 (ENSCWAG00000010564)	REELD1 (ENSCWAG00000010608)	SLC10A7 (ENSCWAG00000010694)	POU4F2 (ENSCWAG00000011402)	TTC29 (ENSCWAG00000011446)	EDNRA (ENSCWAG00000011919)	TMEM184C (ENSCWAG00000012073)	PRMT9 (ENSCWAG00000012146)	ARHGAP10 (ENSCWAG00000012206)	NR3C2 (ENSCWAG00000012270)	DCLK2 (ENSCWAG00000012779) #18	LRBA (ENSCWAG00000013328) #19	MAB21L2 (ENSCWAG00000013479) #21	RPS3A (ENSCWAG00000013495) #22	SH3D19 (ENSCWAG00000013644) #23	PRSS48 (ENSCWAG00000014066) #25	FHIP1A (ENSCWAG00000014155) #26	GATB (ENSCWAG00000014317) #27	FBXW7 (ENSCWAG00000014450) #30	TMEM154 (ENSCWAG00000014757) #31	TIGD4 (ENSCWAG00000014819) #32	ARFIP1 (ENSCWAG00000014843) #33	FHDC1 (ENSCWAG00000014936) #34	TRIM2 (ENSCWAG00000015057) #36	MND1 (ENSCWAG00000015242) #37	TMEM131L (ENSCWAG00000015375)	TLR2 (ENSCWAG00000015442)	SFRP2 (ENSCWAG00000015456)	DCHS2 (ENSCWAG00000015498)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Equus	ANCESTRAL SPECIES	24	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00920000150804	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Horse	MODERN SPECIES	11	C4orf51 (ENSECAG00000034055)	ZNF827 (ENSECAG00000021655)	REELD1 (ENSECAG00000033467)	SLC10A7 (ENSECAG00000026901)	POU4F2 (ENSECAG00000020754)	TTC29 (ENSECAG00000020287)	EDNRA (ENSECAG00000019798)	TMEM184C (ENSECAG00000019574)	PRMT9 (ENSECAG00000018097)	ARHGAP10 (ENSECAG00000016629)	NR3C2 (ENSECAG00000016605)	IQCM (ENSECAG00000033875) #16	DCLK2 (ENSECAG00000014313) #18	MAB21L2 (ENSECAG00000005046) #21	LRBA (ENSECAG00000010768) #19	RPS3A (ENSECAG00000009573) #22	ENSECAG00000035042 #25	PRSS48 (ENSECAG00000007494) #25	SH3D19 (ENSECAG00000007542) #23	FHIP1A (ENSECAG00000007395) #26	GATB (ENSECAG00000003539) #27	FBXW7 (ENSECAG00000022582) #30	TMEM154 (ENSECAG00000022568) #31	TIGD4 (ENSECAG00000004395) #32	ARFIP1 (ENSECAG00000022286) #33	FHDC1 (ENSECAG00000021646) #34	TRIM2 (ENSECAG00000020605) #36	MND1 (ENSECAG00000020362) #37	TMEM131L (ENSECAG00000018035)	ENSECAG00000033827	TLR2 (ENSECAG00000018028)
Donkey	MODERN SPECIES	22	ZNF827 (ENSEASG00005001543)	LSM6 (ENSEASG00005001533)	REELD1 (ENSEASG00005001529)	SLC10A7 (ENSEASG00005001510)	POU4F2 (ENSEASG00005001506)	TTC29 (ENSEASG00005001491)	EDNRA (ENSEASG00005001483)	TMEM184C (ENSEASG00005001471)	PRMT9 (ENSEASG00005001405)	ARHGAP10 (ENSEASG00005001168)	NR3C2 (ENSEASG00005000984)	IQCM (ENSEASG00005028644) #16	DCLK2 (ENSEASG00005000953) #18	MAB21L2 (ENSEASG00005036829) #21	LRBA (ENSEASG00005000458) #19	ENSEASG00005000256 #22	ENSEASG00005029135 #25	SH3D19 (ENSEASG00005000236) #23	FHIP1A (ENSEASG00005000086) #26	GATB (ENSEASG00005015868) #27	FBXW7 (ENSEASG00005015861) #30	ENSEASG00005026801	TMEM154 (ENSEASG00005015856) #31	TIGD4 (ENSEASG00005015855) #32	ARFIP1 (ENSEASG00005015853) #33	FHDC1 (ENSEASG00005015851) #34	TRIM2 (ENSEASG00005015849) #36	MND1 (ENSEASG00005015846) #37	TMEM131L (ENSEASG00005015844)	TLR2 (ENSEASG00005015843)	RNF175 (ENSEASG00005015842)
Chiroptera	ANCESTRAL SPECIES	36	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Microchiroptera	ANCESTRAL SPECIES	38	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Greater horseshoe bat	MODERN SPECIES	9	ZNF827 (ENSRFEG00010014952)	LSM6 (ENSRFEG00010015332)	SLC10A7 (ENSRFEG00010015418)	POU4F2 (ENSRFEG00010015642)	TTC29 (ENSRFEG00010015692)	EDNRA (ENSRFEG00010016295)	TMEM184C (ENSRFEG00010016470)	PRMT9 (ENSRFEG00010016544)	ARHGAP10 (ENSRFEG00010016589)	NR3C2 (ENSRFEG00010016644)	IQCM (ENSRFEG00010005407) #16	ENSRFEG00010005448	DCLK2 (ENSRFEG00010005563) #18	LRBA (ENSRFEG00010005750) #19	MAB21L2 (ENSRFEG00010005946) #21	RPS3A (ENSRFEG00010005967) #22	SH3D19 (ENSRFEG00010006184) #23	PRSS48 (ENSRFEG00010006450) #25	FHIP1A (ENSRFEG00010006614) #26	GATB (ENSRFEG00010006680) #27	ENSRFEG00010006737	FBXW7 (ENSRFEG00010006812) #30	TMEM154 (ENSRFEG00010007089) #31	TIGD4 (ENSRFEG00010007111) #32	ENSRFEG00010007138 #33	FHDC1 (ENSRFEG00010007242) #34	TRIM2 (ENSRFEG00010007313) #36	MND1 (ENSRFEG00010007455) #37	TMEM131L (ENSRFEG00010007681)	RNF175 (ENSRFEG00010007818)	SFRP2 (ENSRFEG00010007919)
Microbat	MODERN SPECIES	938	ZNF827 (ENSMLUG00000008100)	LSM6 (ENSMLUG00000026355)	ENSMLUG00000022646	ENSMLUG00000015165	POU4F2 (ENSMLUG00000015174)	TTC29 (ENSMLUG00000015176)	EDNRA (ENSMLUG00000002880)	TMEM184C (ENSMLUG00000014055)	PRMT9 (ENSMLUG00000014060)	ARHGAP10 (ENSMLUG00000008067)	NR3C2 (ENSMLUG00000008108)	DCLK2 (ENSMLUG00000016144) #18	ENSMLUG00000016161 #19	MAB21L2 (ENSMLUG00000016197) #21	ENSMLUG00000024397 #19	RPS3A (ENSMLUG00000014788) #22	SH3D19 (ENSMLUG00000001478) #23	PRSS48 (ENSMLUG00000002370) #25	FHIP1A (ENSMLUG00000008164) #26	GATB (ENSMLUG00000008194) #27	ENSMLUG00000027201	FBXW7 (ENSMLUG00000014672) #30	TIGD4 (ENSMLUG00000028008) #32	ARFIP1 (ENSMLUG00000002725) #33	FHDC1 (ENSMLUG00000002735) #34	TRIM2 (ENSMLUG00000002195) #36	MND1 (ENSMLUG00000002215) #37	TMEM131L (ENSMLUG00000010411)	TLR2 (ENSMLUG00000012813)	RNF175 (ENSMLUG00000012819)	ENSMLUG00000030163
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00950000182802.B.a.a.b.c	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182980.a.a.p	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Cat	MODERN SPECIES	235	REELD1 (ENSFCAG00000046759)	ENSFCAG00000028577	SLC10A7 (ENSFCAG00000003048)	POU4F2 (ENSFCAG00000003049)	TTC29 (ENSFCAG00000012370)	EDNRA (ENSFCAG00000045372)	TMEM184C (ENSFCAG00000015410)	PRMT9 (ENSFCAG00000008695)	ARHGAP10 (ENSFCAG00000001820)	NR3C2 (ENSFCAG00000027453)	IQCM (ENSFCAG00000022342) #16	DCLK2 (ENSFCAG00000009915) #18	MAB21L2 (ENSFCAG00000025743) #21	LRBA (ENSFCAG00000025294) #19	ENSFCAG00000024391	RPS3A (ENSFCAG00000031288) #22	ENSFCAG00000050463 #25	SH3D19 (ENSFCAG00000011212) #23	ENSFCAG00000039669	FHIP1A (ENSFCAG00000025713) #26	GATB (ENSFCAG00000003207) #27	FBXW7 (ENSFCAG00000000620) #30	TMEM154 (ENSFCAG00000035945) #31	TIGD4 (ENSFCAG00000028877) #32	ENSFCAG00000002796	ARFIP1 (ENSFCAG00000026832) #33	FHDC1 (ENSFCAG00000046337) #34	TRIM2 (ENSFCAG00000031235) #36	MND1 (ENSFCAG00000022084) #37	TMEM131L (ENSFCAG00000003011)	TLR2 (ENSFCAG00000029293)
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00950000182802.B.a.a.b.c	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182980.a.a.p	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
Tiger	MODERN SPECIES	197											IQCM (ENSPTIG00000020620) #16	DCLK2 (ENSPTIG00000021475) #18	LRBA (ENSPTIG00000006996) #19	MAB21L2 (ENSPTIG00000005332) #21	ENSPTIG00000015637	RPS3A (ENSPTIG00000015777) #22	SH3D19 (ENSPTIG00000016330) #23	ENSPTIG00000020404	FHIP1A (ENSPTIG00000020718) #26	GATB (ENSPTIG00000021433) #27	FBXW7 (ENSPTIG00000007915) #30	TMEM154 (ENSPTIG00000011311) #31	TIGD4 (ENSPTIG00000005744) #32	ARFIP1 (ENSPTIG00000013262) #33	FHDC1 (ENSPTIG00000017129) #34	TRIM2 (ENSPTIG00000019257) #36	MND1 (ENSPTIG00000020282) #37	TMEM131L (ENSPTIG00000021150)	TLR2 (ENSPTIG00000005924)	RNF175 (ENSPTIG00000006866)	SFRP2 (ENSPTIG00000007692)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00950000182802.B.a.a.b.c	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182980.a.a.p	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b
leopard	MODERN SPECIES	6							ENSPPRG00000023608	NR3C2 (ENSPPRG00000000130)	ENSPPRG00000000395 ##22	IQCM (ENSPPRG00000001385) #16	DCLK2 (ENSPPRG00000003879) #18	MAB21L2 (ENSPPRG00000017133) #21	ENSPPRG00000004503	LRBA (ENSPPRG00000012725) #19	ENSPPRG00000013249	RPS3A (ENSPPRG00000013732) #22	SH3D19 (ENSPPRG00000001261) #23	ENSPPRG00000017765	FHIP1A (ENSPPRG00000002729) #26	GATB (ENSPPRG00000004993) #27	FBXW7 (ENSPPRG00000006952) #30	TMEM154 (ENSPPRG00000009481) #31	TIGD4 (ENSPPRG00000017931) #32	ARFIP1 (ENSPPRG00000013285) #33	TRIM2 (ENSPPRG00000023428) #36	MND1 (ENSPPRG00000022675) #37	TMEM131L (ENSPPRG00000001439)	TLR2 (ENSPPRG00000018231)	RNF175 (ENSPPRG00000001999)	SFRP2 (ENSPPRG00000002110)	PLRG1 (ENSPPRG00000003918)
lion	MODERN SPECIES	4	LSM6 (ENSPLOG00000011387)	REELD1 (ENSPLOG00000011324)	SLC10A7 (ENSPLOG00000011188)	POU4F2 (ENSPLOG00000011107)	TTC29 (ENSPLOG00000010821)	EDNRA (ENSPLOG00000010653)	TMEM184C (ENSPLOG00000010571)	PRMT9 (ENSPLOG00000010474)	ARHGAP10 (ENSPLOG00000010380)	NR3C2 (ENSPLOG00000010318)	IQCM (ENSPLOG00000010221) #16	DCLK2 (ENSPLOG00000009806) #18	MAB21L2 (ENSPLOG00000009738) #21	LRBA (ENSPLOG00000009669) #19	ENSPLOG00000009622	RPS3A (ENSPLOG00000009578) #22	ENSPLOG00000009537 #25	SH3D19 (ENSPLOG00000009405) #23	ENSPLOG00000009336	FHIP1A (ENSPLOG00000009264) #26	GATB (ENSPLOG00000009163) #27	FBXW7 (ENSPLOG00000008895) #30	TMEM154 (ENSPLOG00000008799) #31	TIGD4 (ENSPLOG00000008774) #32	ENSPLOG00000008744	ARFIP1 (ENSPLOG00000008654) #33	FHDC1 (ENSPLOG00000008607) #34	TRIM2 (ENSPLOG00000008469) #36	ENSPLOG00000008449	MND1 (ENSPLOG00000008331) #37	TMEM131L (ENSPLOG00000007965)
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559	ENSGT00940000159333	ENSGT00390000010038 #16	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Canidae	ANCESTRAL SPECIES	3											ENSGT00510000049125	ENSGT00550000075071	ENSGT00390000002628	ENSGT00940000156278	ENSGT00390000009825	ENSGT00390000018433.s.b #22	ENSGT00390000015916	ENSGT00940000158623	ENSGT00940000163447	ENSGT00940000154590	ENSGT00940000162598	ENSGT00950000183213.a.a.b	ENSGT00530000063694.a	ENSGT00940000160198	ENSGT00390000006233.c.a.a	ENSGT00940000161859	ENSGT00940000156947	ENSGT00390000017359	ENSGT00940000160060	ENSGT00940000160286.n	ENSGT00940000153801.a
Red fox	MODERN SPECIES	200											ENSVVUG00000013640	POLR3K (ENSVVUG00000013638)	SNRNP25 (ENSVVUG00000013635)	RHBDF1 (ENSVVUG00000013624)	MPG (ENSVVUG00000013618)	ENSVVUG00000013617 #22	NPRL3 (ENSVVUG00000013503)	HBZ (ENSVVUG00000013485)	HBM (ENSVVUG00000013480)	ENSVVUG00000013465	LUC7L (ENSVVUG00000013448)	FAM234A (ENSVVUG00000013441)	ENSVVUG00000013438	ARHGDIG (ENSVVUG00000013427)	PDIA2 (ENSVVUG00000013425)	AXIN1 (ENSVVUG00000013419)	MRPL28 (ENSVVUG00000013414)	PGAP6 (ENSVVUG00000013413)	ENSVVUG00000013410	DECR2 (ENSVVUG00000013404)	ENSVVUG00000013356
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00390000017353	ENSGT01030000234578.B.b	ENSGT00950000183117.a.b	ENSGT00950000182931.A	ENSGT00940000154557.c.a	ENSGT00390000001017.g	ENSGT00940000163644.g.b	ENSGT00940000163644.g.a.b	ENSGT00390000010711.j	ENSGT00390000001958.f	ENSGT00510000049125	ENSGT00550000075071	ENSGT00390000002628	ENSGT00940000156278	ENSGT00390000009825	ENSGT00390000018433.s.b #22	ENSGT00390000015916	ENSGT00940000158623.p	ENSGT00940000158623.o	ENSGT00940000163447	ENSGT00940000154590	ENSGT00940000162598	ENSGT00950000183213.a.a.b	ENSGT01090000260046.e.b.b.a.b.a.a.a.b.b.a.a.b	ENSGT00530000063694.a	ENSGT00940000160198	ENSGT00390000006233.c.a.a	ENSGT00940000161859	ENSGT00940000156947	ENSGT00390000017359	ENSGT00940000160060
Dog	DUPLICATION
Dog	MODERN SPECIES	6	SLC10A7 (ENSCAFG00845012862)	POU4F2 (ENSCAFG00845013080)	TTC29 (ENSCAFG00845013144)	EDNRA (ENSCAFG00845013340)	TMEM184C (ENSCAFG00845013383)	PRMT9 (ENSCAFG00845013422)	ARHGAP10 (ENSCAFG00845013505)	NR3C2 (ENSCAFG00845013694)	IQCM (ENSCAFG00845013775) #16	ENSCAFG00845013810	DCLK2 (ENSCAFG00845013901) #18	LRBA (ENSCAFG00845014163) #19	ENSCAFG00845014213	MAB21L2 (ENSCAFG00845005729) #21	ENSCAFG00845005741	RPS3A (ENSCAFG00845005765) #22	SH3D19 (ENSCAFG00845005957) #23	PRSS48 (ENSCAFG00845006205) #25	ENSCAFG00845006404	FAM160A1 (ENSCAFG00845006461) #26	ATP5J2 (ENSCAFG00845006554)	GATB (ENSCAFG00845006707) #27	ENSCAFG00845006957	FBXW7 (ENSCAFG00845007020) #30	ENSCAFG00845007288	TMEM154 (ENSCAFG00845007673) #31	TIGD4 (ENSCAFG00845007856) #32	ARFIP1 (ENSCAFG00845007940) #33	ENSCAFG00845008099	FHDC1 (ENSCAFG00845008193) #34	TRIM2 (ENSCAFG00845008493) #36
Dog	MODERN SPECIES	22	WDR19 (ENSCAFG00845004729)	KLHL5 (ENSCAFG00845004801)	TMEM156 (ENSCAFG00845004925)	FAM114A1 (ENSCAFG00845004930)	TLR1 (ENSCAFG00845004950)	KLF3 (ENSCAFG00845004980)	TBC1D1 (ENSCAFG00845005015)	ENSCAFG00845005098	PGM2 (ENSCAFG00845005108)	RELL1 (ENSCAFG00845005126)	ENSCAFG00845005184	NWD2 (ENSCAFG00845005206)	ENSCAFG00845005226	DTHD1 (ENSCAFG00845005244)	ARAP2 (ENSCAFG00845005336)	ENSCAFG00845005487 #22	PCDH7 (ENSCAFG00845005515)	ENSCAFG00845005559	ENSCAFG00845005572	ENSCAFG00845005634	STIM2 (ENSCAFG00845005670)	TBC1D19 (ENSCAFG00845005743)	CAR1 (ENSCAFG00845005825)	CCKAR (ENSCAFG00845005880)	RBPJ (ENSCAFG00845005977)	ENSCAFG00845006105	SMIM20 (ENSCAFG00845006127)	SEL1L3 (ENSCAFG00845006276)	SLC34A2 (ENSCAFG00845006845)	ANAPC4 (ENSCAFG00845007014)	ZCCHC4 (ENSCAFG00845007308)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	342	ENSCAFG00020011681	ENSCAFG00020011679	CDKL2 (ENSCAFG00020011668)	G3BP2 (ENSCAFG00020011645)	USO1 (ENSCAFG00020011626)	PPEF2 (ENSCAFG00020011617)	ENSCAFG00020011610	SDAD1 (ENSCAFG00020011582)	CXCL10 (ENSCAFG00020011575)	ENSCAFG00020011570	ART3 (ENSCAFG00020011569)	NUP54 (ENSCAFG00020011564)	SCARB2 (ENSCAFG00020011560)	STBD1 (ENSCAFG00020011558)	CCDC158 (ENSCAFG00020011548)	ENSCAFG00020011546 #22	SHROOM3 (ENSCAFG00020011481)	SOWAHB (ENSCAFG00020011471)	SEPTIN11 (ENSCAFG00020011148)	CCNI (ENSCAFG00020011143)	AHCY (ENSCAFG00020011137)	CCNG2 (ENSCAFG00020011134)	ENSCAFG00020011129	ENSCAFG00020011123	CNOT6L (ENSCAFG00020011108)	ENSCAFG00020011079	ENSCAFG00020011074	FRAS1 (ENSCAFG00020011017)	ANXA3 (ENSCAFG00020010989)	ENSCAFG00020010985	BMP2K (ENSCAFG00020010964)
Dingo	MODERN SPECIES	172	LRIF1 (ENSCAFG00020009548)	DRAM2 (ENSCAFG00020009546)	CEPT1 (ENSCAFG00020009537)	DENND2D (ENSCAFG00020009529)	CHIA (ENSCAFG00020009486)	ENSCAFG00020009479	ENSCAFG00020009467	ENSCAFG00020009433	ENSCAFG00020009413	ATP5PB (ENSCAFG00020009409)	ENSCAFG00020009357	POLR3K (ENSCAFG00020009353)	SNRNP25 (ENSCAFG00020009344)	RHBDF1 (ENSCAFG00020009330)	MPG (ENSCAFG00020009328)	ENSCAFG00020009323 #22	NPRL3 (ENSCAFG00020009316)	ENSCAFG00020009312	ENSCAFG00020009310	HBM (ENSCAFG00020009308)	ENSCAFG00020009307	ENSCAFG00020009306	HBQ1 (ENSCAFG00020009300)	LUC7L (ENSCAFG00020009297)	ENSCAFG00020009273	FAM234A (ENSCAFG00020009271)	ENSCAFG00020009264	ARHGDIG (ENSCAFG00020009256)	PDIA2 (ENSCAFG00020009242)	AXIN1 (ENSCAFG00020009229)	MRPL28 (ENSCAFG00020009225)
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Mustelinae	ANCESTRAL SPECIES																	ENSGT00390000018433.s.b #22
Ferret	MODERN SPECIES	224	SLC10A7 (ENSMPUG00000006955)	POU4F2 (ENSMPUG00000006963)	TTC29 (ENSMPUG00000006968)	ENSMPUG00000006979	EDNRA (ENSMPUG00000006985)	TMEM184C (ENSMPUG00000006995)	PRMT9 (ENSMPUG00000007003)	ARHGAP10 (ENSMPUG00000007012)	NR3C2 (ENSMPUG00000007025)	ENSMPUG00000007034 #16	ENSMPUG00000007041 ##22	DCLK2 (ENSMPUG00000007082) #18	LRBA (ENSMPUG00000007098) #19	MAB21L2 (ENSMPUG00000019989) #21	ENSMPUG00000019992	RPS3A (ENSMPUG00000007139) #22	ENSMPUG00000019994	SH3D19 (ENSMPUG00000007143) #23	ENSMPUG00000007291 #25	PRSS48 (ENSMPUG00000007310) #25	FHIP1A (ENSMPUG00000007380) #26	GATB (ENSMPUG00000007394) #27	FBXW7 (ENSMPUG00000007404) #30	ENSMPUG00000007417	TMEM154 (ENSMPUG00000007425) #31	TIGD4 (ENSMPUG00000019997) #32	ARFIP1 (ENSMPUG00000007441) #33	FHDC1 (ENSMPUG00000007505) #34	TRIM2 (ENSMPUG00000007517) #36	MFAP3L (ENSMPUG00000007527)	ENSMPUG00000007531
Ursidae	ANCESTRAL SPECIES	17	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559.y.b	ENSGT00940000159333	ENSGT00940000154895.a.a #18	ENSGT01050000244827.C.c.a.a #21	ENSGT00940000154778 #19	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
Giant Panda	MODERN SPECIES	15	C4orf51 (ENSAMEG00000024155)	ZNF827 (ENSAMEG00000016667)	LSM6 (ENSAMEG00000016671)	REELD1 (ENSAMEG00000028424)	SLC10A7 (ENSAMEG00000016674)	POU4F2 (ENSAMEG00000016679)	TTC29 (ENSAMEG00000016681)	EDNRA (ENSAMEG00000002011)	TMEM184C (ENSAMEG00000002013)	PRMT9 (ENSAMEG00000002035)	ARHGAP10 (ENSAMEG00000002057)	NR3C2 (ENSAMEG00000002068)	DCLK2 (ENSAMEG00000009231) #18	MAB21L2 (ENSAMEG00000030266) #21	LRBA (ENSAMEG00000018421) #19	RPS3A (ENSAMEG00000018425) #22	PRSS48 (ENSAMEG00000018430) #25	SH3D19 (ENSAMEG00000018427) #23	FHIP1A (ENSAMEG00000018431) #26	GATB (ENSAMEG00000018434) #27	ENSAMEG00000025136	FBXW7 (ENSAMEG00000018436) #30	ENSAMEG00000029248	TIGD4 (ENSAMEG00000019149) #32	ARFIP1 (ENSAMEG00000023903) #33	FHDC1 (ENSAMEG00000023933) #34	TRIM2 (ENSAMEG00000018443) #36	MND1 (ENSAMEG00000018446) #37	TMEM131L (ENSAMEG00000018447)	TLR2 (ENSAMEG00000018451)	RNF175 (ENSAMEG00000018453)
Ursus	ANCESTRAL SPECIES	68	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472	ENSGT00940000159559.y.b	ENSGT00940000159333	ENSGT00940000154895.a.a #18	ENSGT00940000154778 #19	ENSGT01050000244827.C.c.a.a #21	ENSGT00390000018433.s.b #22	ENSGT00940000155694 #23	ENSGT00940000160791.A #25	ENSGT00950000182936.a.a.b #26	ENSGT00390000016644 #27	ENSGT00940000154986 #30	ENSGT00390000016183 #31	ENSGT00940000160195.b.b #32	ENSGT00950000183040.A.b #33	ENSGT00940000155128.a.b #34	ENSGT00940000155905.a #36	ENSGT00490000043413 #37	ENSGT00530000063614.a.b	ENSGT00940000156323	ENSGT00390000013075.b	ENSGT00940000156432.a
American black bear	MODERN SPECIES	7979																RPS3A (ENSUAMG00000007965) #22
Polar bear	MODERN SPECIES	122	SMAD1 (ENSUMAG00000015575)	MMAA (ENSUMAG00000015592)	ZNF827 (ENSUMAG00000015618)	LSM6 (ENSUMAG00000015727)	REELD1 (ENSUMAG00000015729)	SLC10A7 (ENSUMAG00000015740)	TTC29 (ENSUMAG00000015756)	EDNRA (ENSUMAG00000015775)	TMEM184C (ENSUMAG00000015782)	PRMT9 (ENSUMAG00000015791)	ARHGAP10 (ENSUMAG00000015810)	NR3C2 (ENSUMAG00000015845)	DCLK2 (ENSUMAG00000015931) #18	LRBA (ENSUMAG00000015985) #19	MAB21L2 (ENSUMAG00000016054) #21	RPS3A (ENSUMAG00000016064) #22	SH3D19 (ENSUMAG00000016073) #23	ENSUMAG00000016093	PRSS48 (ENSUMAG00000016100) #25	ENSUMAG00000016113	FHIP1A (ENSUMAG00000016125) #26	GATB (ENSUMAG00000016157) #27	FBXW7 (ENSUMAG00000016196) #30	ENSUMAG00000016214 #31	TIGD4 (ENSUMAG00000016226) #32	ARFIP1 (ENSUMAG00000016232) #33	FHDC1 (ENSUMAG00000016238) #34	TRIM2 (ENSUMAG00000016262) #36	MND1 (ENSUMAG00000016272) #37	TMEM131L (ENSUMAG00000016274)	TLR2 (ENSUMAG00000016289)