Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154396 #22
Gnathostomata	ANCESTRAL SPECIES	527													ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396 #22	ENSGT00940000155640	ENSGT00940000155120	ENSGT00390000013443.d
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES	61	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Sarcopterygii	ANCESTRAL SPECIES	88	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Amniota	ANCESTRAL SPECIES	9	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Mammalia	ANCESTRAL SPECIES	5	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00980000202328	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Theria	ANCESTRAL SPECIES	3	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00980000202328	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Eutheria	ANCESTRAL SPECIES		ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b
Primates	ANCESTRAL SPECIES	4	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000156262	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000156262	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000156262	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000156262	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00940000154430.e.a	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d.d
Macaca	ANCESTRAL SPECIES		ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00940000154430.e.a	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d.d	ENSGT00940000155542.b
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000156262	ENSGT00390000016438.l	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT01100000263493.a.a.b.b.b.d.a.a #16	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b	ENSGT00390000015466
Rhesus	MODERN SPECIES		DEPDC1 (ENSMMUG00000017766) #7	RPE65 (ENSMMUG00000002752) #8	WLS (ENSMMUG00000022908) #9	DIRAS3 (ENSMMUG00000013333) #10	GNG12 (ENSMMUG00000014807) #11	GADD45A (ENSMMUG00000056103) #12	SERBP1 (ENSMMUG00000000652) #13	ENSMMUG00000054458 #14	IL12RB2 (ENSMMUG00000000651) #15	ENSMMUG00000060609 #16	IL23R (ENSMMUG00000000648) #17	C1H1orf141 (ENSMMUG00000000647) #18	SLC35D1 (ENSMMUG00000000645) #19	MIER1 (ENSMMUG00000000643) #20	DNAI4 (ENSMMUG00000000641) #21	INSL5 (ENSMMUG00000051044) #22	DYNLT5 (ENSMMUG00000000638) #23	SGIP1 (ENSMMUG00000000637) #24	PDE4B (ENSMMUG00000007490) #25	LEPR (ENSMMUG00000003265) #26	LEPROT (ENSMMUG00000003264) #27	DNAJC6 (ENSMMUG00000017259) #28	AK4 (ENSMMUG00000053254) #29	JAK1 (ENSMMUG00000018566) #30	RAVER2 (ENSMMUG00000018565) #31	ENSMMUG00000064480 #32	CACHD1 (ENSMMUG00000007577) #33	UBE2U (ENSMMUG00000012538) #34	ENSMMUG00000056799 #35	ROR1 (ENSMMUG00000004668) #36	ENSMMUG00000061816 #37
Crab-eating macaque	MODERN SPECIES		ENSMFAG00000036815	DEPDC1 (ENSMFAG00000036197) #7	RPE65 (ENSMFAG00000043407) #8	WLS (ENSMFAG00000030065) #9	DIRAS3 (ENSMFAG00000059613) #10	GADD45A (ENSMFAG00000043026) #12	SERBP1 (ENSMFAG00000036635) #13	IL12RB2 (ENSMFAG00000044595) #15	ENSMFAG00000064282 #16	IL23R (ENSMFAG00000003679) #17	C1orf141 (ENSMFAG00000044140) #18	SLC35D1 (ENSMFAG00000025789) #19	ENSMFAG00000048772 ##37	MIER1 (ENSMFAG00000043942) #20	DNAI4 (ENSMFAG00000033193) #21	INSL5 (ENSMFAG00000003313) #22	DYNLT5 (ENSMFAG00000044785) #23	SGIP1 (ENSMFAG00000045356) #24	PDE4B (ENSMFAG00000000162) #25	LEPR (ENSMFAG00000001122) #26	LEPROT (ENSMFAG00000033874) #27	DNAJC6 (ENSMFAG00000044659) #28	AK4 (ENSMFAG00000029324) #29	JAK1 (ENSMFAG00000003493) #30	RAVER2 (ENSMFAG00000031436) #31	CACHD1 (ENSMFAG00000037670) #33	UBE2U (ENSMFAG00000024825) #34	ROR1 (ENSMFAG00000041091) #36	ENSMFAG00000022559	EFCAB7 (ENSMFAG00000001765)	ENSMFAG00000040062
Pig-tailed macaque	MODERN SPECIES	266						GNG12 (ENSMNEG00000044463)	ENSMNEG00000035312 #11	GADD45A (ENSMNEG00000028909) #12	SERBP1 (ENSMNEG00000027600) #13	IL12RB2 (ENSMNEG00000032662) #15	IL23R (ENSMNEG00000041313) #17	C1orf141 (ENSMNEG00000038606) #18	SLC35D1 (ENSMNEG00000041724) #19	MIER1 (ENSMNEG00000038429) #20	DNAI4 (ENSMNEG00000035999) #21	INSL5 (ENSMNEG00000035290) #22	DYNLT5 (ENSMNEG00000043428) #23	SGIP1 (ENSMNEG00000030767) #24	PDE4B (ENSMNEG00000042008) #25	LEPR (ENSMNEG00000033137) #26	LEPROT (ENSMNEG00000033772) #27	DNAJC6 (ENSMNEG00000029908) #28	ENSMNEG00000035202 ##29	JAK1 (ENSMNEG00000008188) #30	RAVER2 (ENSMNEG00000033127) #31	CACHD1 (ENSMNEG00000030755) #33	UBE2U (ENSMNEG00000037903) #34
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00940000154430.e.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Olive baboon	MODERN SPECIES		RPE65 (ENSPANG00000007871) #8	WLS (ENSPANG00000022426) #9	DIRAS3 (ENSPANG00000038255) #10	ENSPANG00000039979 ##35	GNG12 (ENSPANG00000050175)	GADD45A (ENSPANG00000005666) #12	SERBP1 (ENSPANG00000005883) #13	IL12RB2 (ENSPANG00000025662) #15	IL23R (ENSPANG00000000873) #17	ENSPANG00000049986	ENSPANG00000044457	C1orf141 (ENSPANG00000010612) #18	SLC35D1 (ENSPANG00000010289) #19	MIER1 (ENSPANG00000022218) #20	DNAI4 (ENSPANG00000005715) #21	INSL5 (ENSPANG00000023469) #22	DYNLT5 (ENSPANG00000016821) #23	SGIP1 (ENSPANG00000020215) #24	ENSPANG00000039640 ##32	PDE4B (ENSPANG00000008973) #25	ENSPANG00000047632 #26	ENSPANG00000017953 #26	LEPROT (ENSPANG00000003123) #27	DNAJC6 (ENSPANG00000006287) #28	AK4 (ENSPANG00000012980) #29	JAK1 (ENSPANG00000001284) #30	RAVER2 (ENSPANG00000003396) #31	CACHD1 (ENSPANG00000010808) #33	UBE2U (ENSPANG00000020216) #34	ENSPANG00000031367	ENSPANG00000049418
Cercopithecinae_d	ANCESTRAL SPECIES	19	ENSGT00940000156262	ENSGT00940000165544	ENSGT00950000182976.b.a.l #7	ENSGT00950000182913.B #8	ENSGT00940000154430.e.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.b.a ##29	ENSGT00940000162491.b.b	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b
Sooty mangabey	MODERN SPECIES	238	DEPDC1 (ENSCATG00000004444) #7	RPE65 (ENSCATG00000021512) #8	WLS (ENSCATG00000002594) #9	ENSCATG00000040157	GNG12 (ENSCATG00000012440)	GADD45A (ENSCATG00000040913) #12	SERBP1 (ENSCATG00000041393) #13	IL12RB2 (ENSCATG00000018629) #15	ENSCATG00000030460	ENSCATG00000031536	IL23R (ENSCATG00000043155) #17	C1orf141 (ENSCATG00000030751) #18	SLC35D1 (ENSCATG00000044973) #19	MIER1 (ENSCATG00000040832) #20	DNAI4 (ENSCATG00000039576) #21	INSL5 (ENSCATG00000029366) #22	DYNLT5 (ENSCATG00000010584) #23	SGIP1 (ENSCATG00000038351) #24	PDE4B (ENSCATG00000039238) #25	ENSCATG00000034318	LEPR (ENSCATG00000032495) #26	LEPROT (ENSCATG00000035075) #27	DNAJC6 (ENSCATG00000034774) #28	AK4 (ENSCATG00000029189) #29	ENSCATG00000041319	JAK1 (ENSCATG00000041174) #30	RAVER2 (ENSCATG00000040658) #31	ENSCATG00000001153	CACHD1 (ENSCATG00000036728) #33	UBE2U (ENSCATG00000040169) #34	ROR1 (ENSCATG00000032220) #36
Drill	MODERN SPECIES	1151			DEPDC1 (ENSMLEG00000033775) #7	RPE65 (ENSMLEG00000031729) #8	ENSMLEG00000029003	WLS (ENSMLEG00000038942) #9	GNG12 (ENSMLEG00000038713)	GADD45A (ENSMLEG00000033790) #12	SERBP1 (ENSMLEG00000035841) #13	IL12RB2 (ENSMLEG00000035295) #15	IL23R (ENSMLEG00000036045) #17	C1orf141 (ENSMLEG00000032420) #18	SLC35D1 (ENSMLEG00000024346) #19	MIER1 (ENSMLEG00000041550) #20	DNAI4 (ENSMLEG00000042641) #21	INSL5 (ENSMLEG00000030103) #22	DYNLT5 (ENSMLEG00000039935) #23	SGIP1 (ENSMLEG00000023612) #24	PDE4B (ENSMLEG00000039969) #25
Vervet Monkey	MODERN SPECIES	12	LRRC7 (ENSCSAG00000001373)	ENSCSAG00000001372	DEPDC1 (ENSCSAG00000001371) #7	RPE65 (ENSCSAG00000001370) #8	WLS (ENSCSAG00000001369) #9	DIRAS3 (ENSCSAG00000000151) #10	GNG12 (ENSCSAG00000001367)	GADD45A (ENSCSAG00000001366) #12	SERBP1 (ENSCSAG00000001365) #13	IL12RB2 (ENSCSAG00000001364) #15	IL23R (ENSCSAG00000001363) #17	C1orf141 (ENSCSAG00000001362) #18	SLC35D1 (ENSCSAG00000001361) #19	MIER1 (ENSCSAG00000001360) #20	DNAI4 (ENSCSAG00000001359) #21	INSL5 (ENSCSAG00000001358) #22	DYNLT5 (ENSCSAG00000001357) #23	SGIP1 (ENSCSAG00000001356) #24	PDE4B (ENSCSAG00000001355) #25	LEPR (ENSCSAG00000001354) #26	LEPROT (ENSCSAG00000001353) #27	DNAJC6 (ENSCSAG00000001352) #28	JAK1 (ENSCSAG00000001351) #30	RAVER2 (ENSCSAG00000001350) #31	CACHD1 (ENSCSAG00000001349) #33	UBE2U (ENSCSAG00000001348) #34	ROR1 (ENSCSAG00000001347) #36	PGM1 (ENSCSAG00000001346)	EFCAB7 (ENSCSAG00000001345)	ITGB3BP (ENSCSAG00000001344)	ALG6 (ENSCSAG00000001343)
Rhinopithecus	ANCESTRAL SPECIES	10	ENSGT00390000005897 #9	ENSGT00940000154430.e.a	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000154095.b.a	ENSGT00940000154205.h	ENSGT00940000156321	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148334	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b
Black snub-nosed monkey	MODERN SPECIES	569	RPE65 (ENSRBIG00000017984) #8	WLS (ENSRBIG00000033595) #9	ENSRBIG00000034757	DIRAS3 (ENSRBIG00000008401) #10	GNG12 (ENSRBIG00000039245)	GADD45A (ENSRBIG00000042903) #12	ENSRBIG00000040591 #13	IL12RB2 (ENSRBIG00000044278) #15	ENSRBIG00000040301	ENSRBIG00000031720	IL23R (ENSRBIG00000030662) #17	C1orf141 (ENSRBIG00000032392) #18	SLC35D1 (ENSRBIG00000037258) #19	MIER1 (ENSRBIG00000036441) #20	DNAI4 (ENSRBIG00000031969) #21	INSL5 (ENSRBIG00000044118) #22	DYNLT5 (ENSRBIG00000030373) #23	SGIP1 (ENSRBIG00000012071) #24	PDE4B (ENSRBIG00000043330) #25	ENSRBIG00000035828	LEPR (ENSRBIG00000038066) #26	LEPROT (ENSRBIG00000032071) #27	DNAJC6 (ENSRBIG00000036399) #28	AK4 (ENSRBIG00000035967) #29	JAK1 (ENSRBIG00000010792) #30	RAVER2 (ENSRBIG00000044090) #31	CACHD1 (ENSRBIG00000044274) #33	UBE2U (ENSRBIG00000044579) #34	ROR1 (ENSRBIG00000029149) #36	ENSRBIG00000004039	PGM1 (ENSRBIG00000035757)
Golden snub-nosed monkey	MODERN SPECIES	3150		WLS (ENSRROG00000044981) #9	ENSRROG00000028816	DIRAS3 (ENSRROG00000028393) #10	GNG12 (ENSRROG00000044260)	GADD45A (ENSRROG00000032533) #12	SERBP1 (ENSRROG00000041079) #13	IL12RB2 (ENSRROG00000038878) #15	ENSRROG00000034482	IL23R (ENSRROG00000043794) #17	C1orf141 (ENSRROG00000040890) #18	SLC35D1 (ENSRROG00000037180) #19	MIER1 (ENSRROG00000030126) #20	DNAI4 (ENSRROG00000037211) #21	ENSRROG00000006379	INSL5 (ENSRROG00000036668) #22	DYNLT5 (ENSRROG00000037150) #23	SGIP1 (ENSRROG00000042341) #24	PDE4B (ENSRROG00000023516) #25
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d
Hominidae	ANCESTRAL SPECIES	3	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.u #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00390000012628.a.a.d
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.u #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b
Gorilla	MODERN SPECIES		DEPDC1 (ENSGGOG00000016316) #7	RPE65 (ENSGGOG00000009677) #8	ENSGGOG00000039762	WLS (ENSGGOG00000015460) #9	DIRAS3 (ENSGGOG00000043773) #10	GNG12 (ENSGGOG00000042148)	GADD45A (ENSGGOG00000010780) #12	SERBP1 (ENSGGOG00000010396) #13	IL12RB2 (ENSGGOG00000006395) #15	ENSGGOG00000041169	IL23R (ENSGGOG00000006543) #17	C1orf141 (ENSGGOG00000002630) #18	SLC35D1 (ENSGGOG00000009038) #19	MIER1 (ENSGGOG00000008663) #20	DNAI4 (ENSGGOG00000022093) #21	INSL5 (ENSGGOG00000027684) #22	DYNLT5 (ENSGGOG00000002407) #23	SGIP1 (ENSGGOG00000022052) #24	ENSGGOG00000042676	PDE4B (ENSGGOG00000006774) #25	LEPR (ENSGGOG00000000076) #26	LEPROT (ENSGGOG00000036673) #27	DNAJC6 (ENSGGOG00000010799) #28	AK4 (ENSGGOG00000026644) ##29	ENSGGOG00000025825	JAK1 (ENSGGOG00000016456) #30	RAVER2 (ENSGGOG00000016447) #31	CACHD1 (ENSGGOG00000007691) #33	UBE2U (ENSGGOG00000001480) #34	ENSGGOG00000043317	ROR1 (ENSGGOG00000013797) #36
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00640000091578.m.a	ENSGT00950000182976.b.a.l.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.u #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00390000012628.a.a.d	ENSGT00940000155542.b
Pan	ANCESTRAL SPECIES		ENSGT00950000182913.B #8	ENSGT00390000014122.i.a.a	ENSGT00940000154430.e.a.a	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.u #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT01100000263543.a.g.a	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.b ##29	ENSGT00940000162491.b.b	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36
Bonobo	MODERN SPECIES		ENSPPAG00000033442	ENSPPAG00000032814	WLS (ENSPPAG00000033112) #9	DIRAS3 (ENSPPAG00000024921) #10	GNG12 (ENSPPAG00000036419)	ENSPPAG00000018008 #11	GADD45A (ENSPPAG00000042185) #12	IL12RB2 (ENSPPAG00000029198) #15	SERBP1 (ENSPPAG00000027596) #13	ENSPPAG00000018218	IL23R (ENSPPAG00000019836) #17	C1orf141 (ENSPPAG00000023141) #18	SLC35D1 (ENSPPAG00000027327) #19	MIER1 (ENSPPAG00000036218) #20	DNAI4 (ENSPPAG00000030982) #21	INSL5 (ENSPPAG00000024922) #22	DYNLT5 (ENSPPAG00000043796) #23	SGIP1 (ENSPPAG00000041547) #24	ENSPPAG00000032121	PDE4B (ENSPPAG00000033320) #25	LEPR (ENSPPAG00000034852) #26	ENSPPAG00000030271	LEPROT (ENSPPAG00000026304) #27	DNAJC6 (ENSPPAG00000027682) #28	AK4 (ENSPPAG00000038137) #29	ENSPPAG00000009778	ENSPPAG00000040529	JAK1 (ENSPPAG00000015344) #30	RAVER2 (ENSPPAG00000039189) #31	CACHD1 (ENSPPAG00000012742) #33	UBE2U (ENSPPAG00000040025) #34
Chimpanzee	MODERN SPECIES		RPE65 (ENSPTRG00000000846) #8	ENSPTRG00000048041	ENSPTRG00000050855	WLS (ENSPTRG00000000845) #9	DIRAS3 (ENSPTRG00000046970) #10	GNG12 (ENSPTRG00000048598)	GADD45A (ENSPTRG00000000842) #12	SERBP1 (ENSPTRG00000023560) #13	IL12RB2 (ENSPTRG00000000840) #15	ENSPTRG00000050354	IL23R (ENSPTRG00000000839) #17	C1H1orf141 (ENSPTRG00000030574) #18	SLC35D1 (ENSPTRG00000000838) #19	MIER1 (ENSPTRG00000000837) #20	DNAI4 (ENSPTRG00000043837) #21	INSL5 (ENSPTRG00000000835) #22	DYNLT5 (ENSPTRG00000050524) #23	SGIP1 (ENSPTRG00000000832) #24	ENSPTRG00000046740	PDE4B (ENSPTRG00000000831) #25	LEPR (ENSPTRG00000034314) #26	ENSPTRG00000052596	LEPROT (ENSPTRG00000046978) #27	DNAJC6 (ENSPTRG00000000829) #28	AK4 (ENSPTRG00000000827) ##29	ENSPTRG00000048144	JAK1 (ENSPTRG00000000825) #30	RAVER2 (ENSPTRG00000000824) #31	CACHD1 (ENSPTRG00000000823) #33	UBE2U (ENSPTRG00000000822) #34	ENSPTRG00000045538
Human	MODERN SPECIES		LRRC40 (ENSG00000066557)	LRRC7 (ENSG00000033122)	DEPDC1 (ENSG00000024526) #7	RPE65 (ENSG00000116745) #8	WLS (ENSG00000116729) #9	DIRAS3 (ENSG00000162595) #10	GNG12 (ENSG00000172380)	GADD45A (ENSG00000116717) #12	SERBP1 (ENSG00000142864) #13	IL12RB2 (ENSG00000081985) #15	IL23R (ENSG00000162594) #17	C1orf141 (ENSG00000203963) #18	SLC35D1 (ENSG00000116704) #19	MIER1 (ENSG00000198160) #20	DNAI4 (ENSG00000152763) #21	INSL5 (ENSG00000172410) #22	DYNLT5 (ENSG00000152760) #23	SGIP1 (ENSG00000118473) #24	PDE4B (ENSG00000184588) #25	LEPR (ENSG00000116678) #26	LEPROT (ENSG00000213625) #27	DNAJC6 (ENSG00000116675) #28	AK4 (ENSG00000162433) #29	JAK1 (ENSG00000162434) #30	RAVER2 (ENSG00000162437) #31	CACHD1 (ENSG00000158966) #33	UBE2U (ENSG00000177414) #34	ROR1 (ENSG00000185483) #36	PGM1 (ENSG00000079739)	EFCAB7 (ENSG00000203965)	ITGB3BP (ENSG00000142856)
Orangutan	MODERN SPECIES		SRSF11 (ENSPPYG00000001245)	LRRC40 (ENSPPYG00000001246)	LRRC7 (ENSPPYG00000001247)	DEPDC1 (ENSPPYG00000001248) #7	RPE65 (ENSPPYG00000001249) #8	WLS (ENSPPYG00000001251) #9	DIRAS3 (ENSPPYG00000001252) #10	GADD45A (ENSPPYG00000001254) #12	ENSPPYG00000001256 #13	IL12RB2 (ENSPPYG00000001257) #15	IL23R (ENSPPYG00000001258) #17	C1orf141 (ENSPPYG00000001259) #18	SLC35D1 (ENSPPYG00000041264) #19	MIER1 (ENSPPYG00000001261) #20	DNAI4 (ENSPPYG00000001262) #21	INSL5 (ENSPPYG00000001263) #22	DYNLT5 (ENSPPYG00000001264) #23	SGIP1 (ENSPPYG00000001265) #24	PDE4B (ENSPPYG00000001266) #25	LEPR (ENSPPYG00000001267) #26	LEPROT (ENSPPYG00000035587) #27	DNAJC6 (ENSPPYG00000010671) #28	AK4 (ENSPPYG00000001269) #29	JAK1 (ENSPPYG00000001270) #30	RAVER2 (ENSPPYG00000001271) #31	CACHD1 (ENSPPYG00000001272) #33	ENSPPYG00000001273 #34	ROR1 (ENSPPYG00000001274) #36	ENSPPYG00000040176	PGM1 (ENSPPYG00000029788)	EFCAB7 (ENSPPYG00000001275)
Gibbon	MODERN SPECIES	20	TCEANC2 (ENSNLEG00000003408)	TMEM59 (ENSNLEG00000003413)	LRRC42 (ENSNLEG00000003438)	ENSNLEG00000033229	DIO1 (ENSNLEG00000003472)	ENSNLEG00000027525	ENSNLEG00000003495	NDC1 (ENSNLEG00000003509)	GLIS1 (ENSNLEG00000003533)	DMRTB1 (ENSNLEG00000003538)	ENSNLEG00000030083	ENSNLEG00000034319 #18	SLC35D1 (ENSNLEG00000015317) #19	MIER1 (ENSNLEG00000015283) #20	DNAI4 (ENSNLEG00000015267) #21	INSL5 (ENSNLEG00000015264) #22	DYNLT5 (ENSNLEG00000015262) #23	ENSNLEG00000015235 #24	PDE4B (ENSNLEG00000015222) #25	LEPR (ENSNLEG00000015182) #26	LEPROT (ENSNLEG00000029367) #27	DNAJC6 (ENSNLEG00000015165) #28	AK4 (ENSNLEG00000033489) #29	ENSNLEG00000031560	ENSNLEG00000035125	JAK1 (ENSNLEG00000015149) #30	RAVER2 (ENSNLEG00000015145) #31	CACHD1 (ENSNLEG00000015119) #33	UBE2U (ENSNLEG00000015108) #34	ENSNLEG00000032734	ENSNLEG00000031572
Platyrrhini	ANCESTRAL SPECIES		ENSGT00950000182913.B #8	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000154205.h.ab.b	ENSGT00530000064198 #17	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.a #29	ENSGT00940000154568.q.a.a.b ##29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b
Cebidae	ANCESTRAL SPECIES	1	ENSGT00950000182913.B #8	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000154205.h.ab.b	ENSGT00530000064198 #17	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.a.b ##29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b	ENSGT00390000015466
Cebidae_a	ANCESTRAL SPECIES		ENSGT00950000182913.B #8	ENSGT00940000155162.c.a.b	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00910000147273 #11	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.q #13	ENSGT00940000159829 #15	ENSGT00940000154205.h.ab.b	ENSGT00530000064198 #17	ENSGT00390000004428.a.g.b.e.a	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.q.a.b ##29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.b	ENSGT00940000155542.b	ENSGT00390000015466
Bolivian squirrel monkey	MODERN SPECIES	45	LRRC7 (ENSSBOG00000023202)	ENSSBOG00000024654	DEPDC1 (ENSSBOG00000032526) #7	RPE65 (ENSSBOG00000020711) #8	ENSSBOG00000017047	WLS (ENSSBOG00000029071) #9	GNG12 (ENSSBOG00000023413)	GADD45A (ENSSBOG00000026960) #12	SERBP1 (ENSSBOG00000034290) #13	IL12RB2 (ENSSBOG00000033618) #15	IL23R (ENSSBOG00000031496) #17	C1orf141 (ENSSBOG00000020938) #18	SLC35D1 (ENSSBOG00000033454) #19	MIER1 (ENSSBOG00000023688) #20	DNAI4 (ENSSBOG00000021867) #21	INSL5 (ENSSBOG00000021914) #22	DYNLT5 (ENSSBOG00000026948) #23	SGIP1 (ENSSBOG00000032865) #24	PDE4B (ENSSBOG00000028805) #25	LEPR (ENSSBOG00000024199) #26	ENSSBOG00000012974	LEPROT (ENSSBOG00000027406) #27	DNAJC6 (ENSSBOG00000032291) #28	ENSSBOG00000015490 ##29	ENSSBOG00000022771	JAK1 (ENSSBOG00000024631) #30	RAVER2 (ENSSBOG00000023706) #31	CACHD1 (ENSSBOG00000028299) #33	UBE2U (ENSSBOG00000023301) #34	ROR1 (ENSSBOG00000019997) #36	ENSSBOG00000021546
Capuchin	MODERN SPECIES	3	ENSCCAG00000035780	WLS (ENSCCAG00000031004) #9	GNG12 (ENSCCAG00000035811)	ENSCCAG00000022553 #11	GADD45A (ENSCCAG00000037220) #12	ENSCCAG00000018061 #13	IL12RB2 (ENSCCAG00000018901) #15	ENSCCAG00000031024	IL23R (ENSCCAG00000026286) #17	ENSCCAG00000028263	C1orf141 (ENSCCAG00000037706) #18	ENSCCAG00000032359	SLC35D1 (ENSCCAG00000029977) #19	MIER1 (ENSCCAG00000031798) #20	DNAI4 (ENSCCAG00000028639) #21	INSL5 (ENSCCAG00000030022) #22	DYNLT5 (ENSCCAG00000030457) #23	SGIP1 (ENSCCAG00000024793) #24
Mas night monkey	MODERN SPECIES	1222	RPE65 (ENSANAG00000038489) #8	ENSANAG00000037963	WLS (ENSANAG00000035453) #9	GNG12 (ENSANAG00000036464)	ENSANAG00000033493 #11	GADD45A (ENSANAG00000024828) #12	ENSANAG00000022432 #13	IL12RB2 (ENSANAG00000033363) #15	ENSANAG00000035913	IL23R (ENSANAG00000036542) #17	ENSANAG00000024382	C1orf141 (ENSANAG00000029861) #18	SLC35D1 (ENSANAG00000035895) #19	MIER1 (ENSANAG00000036304) #20	DNAI4 (ENSANAG00000035289) #21	INSL5 (ENSANAG00000038322) #22	DYNLT5 (ENSANAG00000025126) #23	SGIP1 (ENSANAG00000035883) #24	PDE4B (ENSANAG00000035391) #25	LEPR (ENSANAG00000003036) #26	ENSANAG00000022325	LEPROT (ENSANAG00000022539) #27	DNAJC6 (ENSANAG00000021991) #28	AK4 (ENSANAG00000003723) #29	ENSANAG00000018683	ENSANAG00000035974	JAK1 (ENSANAG00000036647) #30	ENSANAG00000032030	RAVER2 (ENSANAG00000025857) #31	CACHD1 (ENSANAG00000033660) #33	UBE2U (ENSANAG00000033933) #34
Tarsier	MODERN SPECIES	6934													MIER1 (ENSTSYG00000011489) #20	ENSTSYG00000007735	WDR78 (ENSTSYG00000014357) #21	INSL5 (ENSTSYG00000007415) #22	DYNLT5 (ENSTSYG00000033248) #23	SGIP1 (ENSTSYG00000006232) #24
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.l.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.l.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00910000148214	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Lemuriformes_a	ANCESTRAL SPECIES	20			ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.l.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Coquerels sifaka	MODERN SPECIES	577				DEPDC1 (ENSPCOG00000023927) #7	RPE65 (ENSPCOG00000017897) #8	WLS (ENSPCOG00000023967) #9	ENSPCOG00000003500	GADD45A (ENSPCOG00000023251) #12	SERBP1 (ENSPCOG00000022373) #13	IL12RB2 (ENSPCOG00000016862) #15	IL23R (ENSPCOG00000028626) #17	C1orf141 (ENSPCOG00000019432) #18	SLC35D1 (ENSPCOG00000005606) #19	MIER1 (ENSPCOG00000015234) #20	DNAI4 (ENSPCOG00000019993) #21	INSL5 (ENSPCOG00000000197) #22	DYNLT5 (ENSPCOG00000014105) #23	SGIP1 (ENSPCOG00000027133) #24	PDE4B (ENSPCOG00000024642) #25
Greater bamboo lemur	MODERN SPECIES	647										IL12RB2 (ENSPSMG00000005445) #15	IL23R (ENSPSMG00000005526) #17	C1orf141 (ENSPSMG00000005542) #18	SLC35D1 (ENSPSMG00000005559) #19	MIER1 (ENSPSMG00000005586) #20	DNAI4 (ENSPSMG00000005717) #21	INSL5 (ENSPSMG00000005723) #22	DYNLT5 (ENSPSMG00000005736) #23	SGIP1 (ENSPSMG00000005876) #24	PDE4B (ENSPSMG00000006182) #25	LEPR (ENSPSMG00000006503) #26	LEPROT (ENSPSMG00000006583) #27	DNAJC6 (ENSPSMG00000006640) #28	ENSPSMG00000006649 #29	JAK1 (ENSPSMG00000006700) #30	RAVER2 (ENSPSMG00000006729) #31	CACHD1 (ENSPSMG00000006786) #33	UBE2U (ENSPSMG00000006796) #34	ROR1 (ENSPSMG00000006825) #36	PGM1 (ENSPSMG00000006861)	EFCAB7 (ENSPSMG00000006885)	ITGB3BP (ENSPSMG00000006890)
Mouse lemur	MODERN SPECIES	11	LRRC7 (ENSMICG00000005504)	DEPDC1 (ENSMICG00000002794) #7	RPE65 (ENSMICG00000002782) #8	WLS (ENSMICG00000010218) #9	ENSMICG00000026786	GNG12 (ENSMICG00000045755)	GADD45A (ENSMICG00000037822) #12	ENSMICG00000017733 #13	IL12RB2 (ENSMICG00000017732) #15	ENSMICG00000046171	IL23R (ENSMICG00000000494) #17	C1orf141 (ENSMICG00000004483) #18	SLC35D1 (ENSMICG00000004473) #19	MIER1 (ENSMICG00000004461) #20	ENSMICG00000043215 #21	INSL5 (ENSMICG00000047927) #22	DYNLT5 (ENSMICG00000046099) #23	ENSMICG00000035331	SGIP1 (ENSMICG00000004414) #24	ENSMICG00000044205	PDE4B (ENSMICG00000008570) #25	ENSMICG00000028091	LEPR (ENSMICG00000012143) #26	LEPROT (ENSMICG00000032518) #27	DNAJC6 (ENSMICG00000006518) #28	ENSMICG00000028934	ENSMICG00000013794 #29	JAK1 (ENSMICG00000013750) #30	RAVER2 (ENSMICG00000029259) #31	CACHD1 (ENSMICG00000013692) #33	UBE2U (ENSMICG00000035220) #34
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Glires	ANCESTRAL SPECIES		ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Rodentia	ANCESTRAL SPECIES		ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Myomorpha	ANCESTRAL SPECIES	55												ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Muroidea	ANCESTRAL SPECIES	3	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.g.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.g.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000030987	Bsnd (ENSPEMG00000006993)	Pcsk9 (ENSPEMG00000014728)	Usp24 (ENSPEMG00000014199)	Plpp3 (ENSPEMG00000031102)	Prkaa2 (ENSPEMG00000016917)	Fyb2 (ENSPEMG00000000327)	C8a (ENSPEMG00000001782)	C8b (ENSPEMG00000015696)	Dab1 (ENSPEMG00000009115)	Oma1 (ENSPEMG00000024136)	ENSPEMG00000012355 #18	Slc35d1 (ENSPEMG00000024230) #19	Mier1 (ENSPEMG00000018047) #20	Dnai4 (ENSPEMG00000023810) #21	Insl5 (ENSPEMG00000007310) #22	Dynlt5 (ENSPEMG00000031134) #23	Sgip1 (ENSPEMG00000023234) #24	Pde4b (ENSPEMG00000021904) #25	ENSPEMG00000021391	ENSPEMG00000029823	ENSPEMG00000005306	Lepr (ENSPEMG00000013702) #26	Leprot (ENSPEMG00000016339) #27	Dnajc6 (ENSPEMG00000010017) #28	Ak4 (ENSPEMG00000016088) #29	Jak1 (ENSPEMG00000004628) #30	Raver2 (ENSPEMG00000001332) #31	Cachd1 (ENSPEMG00000018442) #33	ENSPEMG00000024764	ENSPEMG00000028140 #34
Prairie vole	MODERN SPECIES	1	Dhcr24 (ENSMOCG00000013412)	Bsnd (ENSMOCG00000005609)	Pcsk9 (ENSMOCG00000014339)	Usp24 (ENSMOCG00000022245)	Plpp3 (ENSMOCG00000013244)	Prkaa2 (ENSMOCG00000013455)	Fyb2 (ENSMOCG00000012363)	C8a (ENSMOCG00000009752)	C8b (ENSMOCG00000001170)	Dab1 (ENSMOCG00000006254)	Oma1 (ENSMOCG00000017366)	4921539E11Rik (ENSMOCG00000012861) #18	Slc35d1 (ENSMOCG00000011734) #19	Mier1 (ENSMOCG00000004857) #20	Dnai4 (ENSMOCG00000022543) #21	Insl5 (ENSMOCG00000017365) #22	Dynlt5 (ENSMOCG00000016376) #23	Sgip1 (ENSMOCG00000020243) #24	ENSMOCG00000007698	Pde4b (ENSMOCG00000017467) #25	Lepr (ENSMOCG00000014570) #26	Leprot (ENSMOCG00000019296) #27	Dnajc6 (ENSMOCG00000018708) #28	Ak4 (ENSMOCG00000014444) #29	Jak1 (ENSMOCG00000011865) #30	Raver2 (ENSMOCG00000018087) #31	Cachd1 (ENSMOCG00000020004) #33	ENSMOCG00000013769 #34	ENSMOCG00000009548	Ror1 (ENSMOCG00000010797) #36	Pgm1 (ENSMOCG00000011278)
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00390000008338	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.g.a #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001015179	ENSCGRG00001015633	Plpp3 (ENSCGRG00001018283)	Prkaa2 (ENSCGRG00001019125)	Fyb2 (ENSCGRG00001024683)	C8a (ENSCGRG00001003120)	C8b (ENSCGRG00001009616)	Dab1 (ENSCGRG00001020473)	ENSCGRG00001011317	ENSCGRG00001022662	Oma1 (ENSCGRG00001019711)	4921539E11Rik (ENSCGRG00001020618) #18	Slc35d1 (ENSCGRG00001022056) #19	Mier1 (ENSCGRG00001002839) #20	Dnai4 (ENSCGRG00001013824) #21	Insl5 (ENSCGRG00001018011) #22	Dynlt5 (ENSCGRG00001018434) #23	Sgip1 (ENSCGRG00001006459) #24	Pde4b (ENSCGRG00001000502) #25	Lepr (ENSCGRG00001013297) #26	Leprot (ENSCGRG00001018267) #27	Dnajc6 (ENSCGRG00001021227) #28	ENSCGRG00001024354	ENSCGRG00001003307 #29	Jak1 (ENSCGRG00001008727) #30	Raver2 (ENSCGRG00001011852) #31	Cachd1 (ENSCGRG00001024125) #33	Ube2u (ENSCGRG00001024744) #34	ENSCGRG00001023231	Ror1 (ENSCGRG00001015667) #36	Pgm1 (ENSCGRG00001024185)
Golden Hamster	MODERN SPECIES	648	Dhcr24 (ENSMAUG00000010063)	Bsnd (ENSMAUG00000021088)	Pcsk9 (ENSMAUG00000021824)	ENSMAUG00000016142	Plpp3 (ENSMAUG00000003549)	Prkaa2 (ENSMAUG00000006545)	Fyb2 (ENSMAUG00000013449)	C8a (ENSMAUG00000011874)	C8b (ENSMAUG00000001377)	Dab1 (ENSMAUG00000008898)	Oma1 (ENSMAUG00000015220)	ENSMAUG00000005226 #18	Slc35d1 (ENSMAUG00000011926) #19	Mier1 (ENSMAUG00000010939) #20	Dnai4 (ENSMAUG00000008194) #21	Insl5 (ENSMAUG00000002720) #22	Dynlt5 (ENSMAUG00000008063) #23	Sgip1 (ENSMAUG00000013637) #24	Pde4b (ENSMAUG00000018697) #25	ENSMAUG00000020650
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Mus	ANCESTRAL SPECIES	3	ENSGT00390000007464	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00860000135728	ENSGT00940000157568 #33
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00950000183087.A.a.b.b.g.m.a.b.b.b.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.a.a	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00860000135728
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00950000183087.A.a.b.b.g.m.a.b.b.b.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.a.a	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00860000135728
Mouse	MODERN SPECIES	13	Tmem61 (ENSMUSG00000085933)	Bsnd (ENSMUSG00000025418)	Pcsk9 (ENSMUSG00000044254)	Usp24 (ENSMUSG00000028514)	Plpp3 (ENSMUSG00000028517)	Prkaa2 (ENSMUSG00000028518)	Fyb2 (ENSMUSG00000078612)	C8a (ENSMUSG00000035031)	C8b (ENSMUSG00000029656)	Dab1 (ENSMUSG00000028519)	Oma1 (ENSMUSG00000035069)	4921539E11Rik (ENSMUSG00000028520) #18	Slc35d1 (ENSMUSG00000028521) #19	Mier1 (ENSMUSG00000028522) #20	Dnai4 (ENSMUSG00000035126) #21	Insl5 (ENSMUSG00000066090) #22	Dynlt5 (ENSMUSG00000028523) #23	Sgip1 (ENSMUSG00000028524) #24	Pde4b (ENSMUSG00000028525) #25	Gm12789 (ENSMUSG00000078625)	Gm12790 (ENSMUSG00000078626)	Pramel19 (ENSMUSG00000070890)	Pramel18 (ENSMUSG00000037028)	C130073F10Rik (ENSMUSG00000046133)	Pramel17 (ENSMUSG00000035201)	Lepr (ENSMUSG00000057722) #26	Leprot (ENSMUSG00000035212) #27	Dnajc6 (ENSMUSG00000028528) #28	Ak4 (ENSMUSG00000028527) #29	Jak1 (ENSMUSG00000028530) #30	Raver2 (ENSMUSG00000035275) #31
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000008549	ENSGT00490000043472	ENSGT00940000159474	ENSGT00950000183087.A.a.b.b.g.m.a.b.b.b.b	ENSGT00940000156450	ENSGT00940000156945	ENSGT00530000063460.A.a	ENSGT00940000160126	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00860000135728	ENSGT00940000157568 #33	ENSGT00940000162256 #34
spretus	MODERN SPECIES	13	Pcsk9 (MGP_SPRETEiJ_G0027200)	Usp24 (MGP_SPRETEiJ_G0027199)	MGP_SPRETEiJ_G0027198	Plpp3 (MGP_SPRETEiJ_G0027197)	Prkaa2 (MGP_SPRETEiJ_G0027196)	Fyb2 (MGP_SPRETEiJ_G0027195)	MGP_SPRETEiJ_G0027194	C8a (MGP_SPRETEiJ_G0027193)	C8b (MGP_SPRETEiJ_G0027192)	Dab1 (MGP_SPRETEiJ_G0027191)	Oma1 (MGP_SPRETEiJ_G0027190)	4921539E11Rik (MGP_SPRETEiJ_G0027189) #18	Slc35d1 (MGP_SPRETEiJ_G0027188) #19	Mier1 (MGP_SPRETEiJ_G0027187) #20	Dnai4 (MGP_SPRETEiJ_G0027186) #21	Insl5 (MGP_SPRETEiJ_G0027185) #22	Dynlt5 (MGP_SPRETEiJ_G0027184) #23	Sgip1 (MGP_SPRETEiJ_G0027183) #24	Pde4b (MGP_SPRETEiJ_G0027182) #25	MGP_SPRETEiJ_G0027181	MGP_SPRETEiJ_G0027180	MGP_SPRETEiJ_G0027179	C130073F10Rik (MGP_SPRETEiJ_G0027178)	MGP_SPRETEiJ_G0027177	Lepr (MGP_SPRETEiJ_G0027176) #26	Leprot (MGP_SPRETEiJ_G0027175) #27	Dnajc6 (MGP_SPRETEiJ_G0027174) #28	Ak4 (MGP_SPRETEiJ_G0027173) #29	Jak1 (MGP_SPRETEiJ_G0027172) #30	Raver2 (MGP_SPRETEiJ_G0027171) #31	MGP_SPRETEiJ_G0027170
Steppe mouse	MODERN SPECIES	3163										ENSMSIG00000009455	Oma1 (ENSMSIG00000009542)	4921539E11Rik (ENSMSIG00000009567) #18	Slc35d1 (ENSMSIG00000009628) #19	Mier1 (ENSMSIG00000009650) #20	ENSMSIG00000009834 #21	Insl5 (ENSMSIG00000009849) #22	Dynlt5 (ENSMSIG00000009866) #23	Sgip1 (ENSMSIG00000009987) #24	Pde4b (ENSMSIG00000010360) #25	Gm12789 (ENSMSIG00000010531)	ENSMSIG00000010553
Ryukyu mouse	MODERN SPECIES	13	Pcsk9 (MGP_CAROLIEiJ_G0026231)	Usp24 (MGP_CAROLIEiJ_G0026230)	MGP_CAROLIEiJ_G0026229	Plpp3 (MGP_CAROLIEiJ_G0026228)	Prkaa2 (MGP_CAROLIEiJ_G0026227)	Fyb2 (MGP_CAROLIEiJ_G0026226)	MGP_CAROLIEiJ_G0026225	C8a (MGP_CAROLIEiJ_G0026224)	C8b (MGP_CAROLIEiJ_G0026223)	Dab1 (MGP_CAROLIEiJ_G0026222)	Oma1 (MGP_CAROLIEiJ_G0026221)	4921539E11Rik (MGP_CAROLIEiJ_G0026220) #18	Slc35d1 (MGP_CAROLIEiJ_G0026219) #19	Mier1 (MGP_CAROLIEiJ_G0026218) #20	Dnai4 (MGP_CAROLIEiJ_G0026217) #21	Insl5 (MGP_CAROLIEiJ_G0026216) #22	MGP_CAROLIEiJ_G0026215 #23	Sgip1 (MGP_CAROLIEiJ_G0026214) #24	Pde4b (MGP_CAROLIEiJ_G0026213) #25	Gm12789 (MGP_CAROLIEiJ_G0026212)	MGP_CAROLIEiJ_G0026211	MGP_CAROLIEiJ_G0026210	C130073F10Rik (MGP_CAROLIEiJ_G0026209)	MGP_CAROLIEiJ_G0026208	Lepr (MGP_CAROLIEiJ_G0026207) #26	Leprot (MGP_CAROLIEiJ_G0026206) #27	Dnajc6 (MGP_CAROLIEiJ_G0026205) #28	Ak4 (MGP_CAROLIEiJ_G0026204) #29	Jak1 (MGP_CAROLIEiJ_G0026203) #30	Raver2 (MGP_CAROLIEiJ_G0026202) #31	MGP_CAROLIEiJ_G0026201
Shrew mouse	MODERN SPECIES	19	Dhcr24 (MGP_PahariEiJ_G0028567)	Bsnd (MGP_PahariEiJ_G0028566)	Pcsk9 (MGP_PahariEiJ_G0028565)	Usp24 (MGP_PahariEiJ_G0028564)	Plpp3 (MGP_PahariEiJ_G0028563)	Prkaa2 (MGP_PahariEiJ_G0028562)	Fyb2 (MGP_PahariEiJ_G0028561)	C8a (MGP_PahariEiJ_G0028560)	C8b (MGP_PahariEiJ_G0028559)	Dab1 (MGP_PahariEiJ_G0028558)	Oma1 (MGP_PahariEiJ_G0028557)	4921539E11Rik (MGP_PahariEiJ_G0028556) #18	Slc35d1 (MGP_PahariEiJ_G0028555) #19	Mier1 (MGP_PahariEiJ_G0028554) #20	Dnai4 (MGP_PahariEiJ_G0028553) #21	Insl5 (MGP_PahariEiJ_G0028552) #22	MGP_PahariEiJ_G0028551 #23	Sgip1 (MGP_PahariEiJ_G0028550) #24	Pde4b (MGP_PahariEiJ_G0028549) #25	MGP_PahariEiJ_G0028548	MGP_PahariEiJ_G0028547	MGP_PahariEiJ_G0028546	Pramel17 (MGP_PahariEiJ_G0028545)	Lepr (MGP_PahariEiJ_G0028544) #26	Leprot (MGP_PahariEiJ_G0028543) #27	Dnajc6 (MGP_PahariEiJ_G0028542) #28	Ak4 (MGP_PahariEiJ_G0028541) #29	Jak1 (MGP_PahariEiJ_G0028540) #30	Raver2 (MGP_PahariEiJ_G0028539) #31	MGP_PahariEiJ_G0028538	Cachd1 (MGP_PahariEiJ_G0028537) #33
Lesser Egyptian jerboa	MODERN SPECIES	85	Fbxl8 (ENSJJAG00000021256)	Tradd (ENSJJAG00000008375)	B3gnt9 (ENSJJAG00000023578)	ENSJJAG00000012442	Cbfb (ENSJJAG00000013223)	ENSJJAG00000010970	Ak4 (ENSJJAG00000014122) #29	ENSJJAG00000014277	ENSJJAG00000023828 #28	ENSJJAG00000024179 #27	Lepr (ENSJJAG00000001138) #26	Pde4b (ENSJJAG00000015966) #25	ENSJJAG00000011111	ENSJJAG00000023231	Sgip1 (ENSJJAG00000011912) #24	ENSJJAG00000001836 #22	Dnai4 (ENSJJAG00000013132) #21	Mier1 (ENSJJAG00000014161) #20	Slc35d1 (ENSJJAG00000018167) #19	Insr (ENSJJAG00000023697)	ENSJJAG00000013191	Arhgef18 (ENSJJAG00000007633)	Pex11g (ENSJJAG00000019745)	Tex45 (ENSJJAG00000017920)	Zfp358 (ENSJJAG00000021547)	Mcoln1 (ENSJJAG00000014530)	Pnpla6 (ENSJJAG00000024045)	ENSJJAG00000010945	ENSJJAG00000018948	Xab2 (ENSJJAG00000021187)	Pet100 (ENSJJAG00000005595)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Marmotini	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Marmotini_b	ANCESTRAL SPECIES	105	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26
Squirrel	MODERN SPECIES	191	LRRC40 (ENSSTOG00000008649)	LRRC7 (ENSSTOG00000008618)	ENSSTOG00000032513	DEPDC1 (ENSSTOG00000001673) #7	RPE65 (ENSSTOG00000001659) #8	WLS (ENSSTOG00000008145) #9	GNG12 (ENSSTOG00000004502)	GADD45A (ENSSTOG00000024503) #12	SERBP1 (ENSSTOG00000026587) #13	ENSSTOG00000016126 #15	IL23R (ENSSTOG00000005238) #17	SLC35D1 (ENSSTOG00000010086) #19	MIER1 (ENSSTOG00000011394) #20	ENSSTOG00000011383 #21	ENSSTOG00000031556	INSL5 (ENSSTOG00000016330) #22	ENSSTOG00000016329	SGIP1 (ENSSTOG00000016322) #24	PDE4B (ENSSTOG00000028938) #25	LEPR (ENSSTOG00000022005) #26
Arctic ground squirrel	MODERN SPECIES	14	LRRC7 (ENSUPAG00010014242)	DEPDC1 (ENSUPAG00010014188) #7	RPE65 (ENSUPAG00010014157) #8	WLS (ENSUPAG00010014142) #9	ENSUPAG00010014133 #10	GNG12 (ENSUPAG00010014121)	GADD45A (ENSUPAG00010014109) #12	SERBP1 (ENSUPAG00010013929) #13	IL12RB2 (ENSUPAG00010013900) #15	IL23R (ENSUPAG00010013875) #17	ENSUPAG00010013858 #18	SLC35D1 (ENSUPAG00010013821) #19	MIER1 (ENSUPAG00010013780) #20	ENSUPAG00010013759 #21	ENSUPAG00010013745 #21	INSL5 (ENSUPAG00010013736) #22	DYNLT5 (ENSUPAG00010013722) #23	SGIP1 (ENSUPAG00010013307) #24	PDE4B (ENSUPAG00010013188) #25
Alpin marmot	MODERN SPECIES	15									ENSMMMG00000012126 #15	IL23R (ENSMMMG00000012144) #17	C1orf141 (ENSMMMG00000012198) #18	SLC35D1 (ENSMMMG00000012219) #19	MIER1 (ENSMMMG00000012235) #20	ENSMMMG00000012275 #21	ENSMMMG00000012281 #21	INSL5 (ENSMMMG00000012294) #22	DYNLT5 (ENSMMMG00000012298) #23	SGIP1 (ENSMMMG00000012312) #24	PDE4B (ENSMMMG00000012777) #25	LEPR (ENSMMMG00000013253) #26	LEPROT (ENSMMMG00000013361) #27	DNAJC6 (ENSMMMG00000013392) #28	ENSMMMG00000013457	ENSMMMG00000013460 #29	JAK1 (ENSMMMG00000013495) #30	RAVER2 (ENSMMMG00000013548) #31	CACHD1 (ENSMMMG00000013619) #33	UBE2U (ENSMMMG00000013711) #34	ROR1 (ENSMMMG00000013738) #36	PGM1 (ENSMMMG00000013759)	EFCAB7 (ENSMMMG00000013790)
Eurasian red squirrel	MODERN SPECIES		DEPDC1 (ENSSVLG00005015797) #7	RPE65 (ENSSVLG00005015624) #8	WLS (ENSSVLG00005015479) #9	DIRAS3 (ENSSVLG00005015456) #10	GNG12 (ENSSVLG00005015424)	GADD45A (ENSSVLG00005015298) #12	SERBP1 (ENSSVLG00005015184) #13	IL12RB2 (ENSSVLG00005014564) #15	IL23R (ENSSVLG00005014294) #17	ENSSVLG00005014261	C1orf141 (ENSSVLG00005014047) #18	ENSSVLG00005013884	ENSSVLG00005013815 #19	ENSSVLG00005013677 #20	DNAI4 (ENSSVLG00005013339) #21	INSL5 (ENSSVLG00005013170) #22	DYNLT5 (ENSSVLG00005013092) #23	SGIP1 (ENSSVLG00005012998) #24	PDE4B (ENSSVLG00005012364) #25	LEPR (ENSSVLG00005011511) #26	ENSSVLG00005011368	ENSSVLG00005011213 #27	DNAJC6 (ENSSVLG00005010809) #28	ENSSVLG00005010654 #29	ENSSVLG00005010636	ENSSVLG00005010609	JAK1 (ENSSVLG00005010529) #30	RAVER2 (ENSSVLG00005008615) #31	CACHD1 (ENSSVLG00005008345) #33	ENSSVLG00005008279 #34	ROR1 (ENSSVLG00005008154) #36
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000032766	ENSHGLG00000044082	DEPDC1 (ENSHGLG00000010030) #7	RPE65 (ENSHGLG00000010215) #8	WLS (ENSHGLG00000004340) #9	GNG12 (ENSHGLG00000004433)	GADD45A (ENSHGLG00000004470) #12	ENSHGLG00000047078	IL12RB2 (ENSHGLG00000005676) #15	IL23R (ENSHGLG00000006341) #17	ENSHGLG00000050506	SLC35D1 (ENSHGLG00000007417) #19	MIER1 (ENSHGLG00000008072) #20	DNAI4 (ENSHGLG00000008391) #21	ENSHGLG00000037538	INSL5 (ENSHGLG00000038941) #22	DYNLT5 (ENSHGLG00000011534) #23	SGIP1 (ENSHGLG00000012915) #24	PDE4B (ENSHGLG00000015509) #25	ENSHGLG00000041770	ENSHGLG00000042860	LEPR (ENSHGLG00000017191) #26	LEPROT (ENSHGLG00000017601) #27	DNAJC6 (ENSHGLG00000018610) #28	ENSHGLG00000047181	ENSHGLG00000038659 #29	JAK1 (ENSHGLG00000018566) #30	RAVER2 (ENSHGLG00000018409) #31	ENSHGLG00000020728	CACHD1 (ENSHGLG00000018425) #33	ENSHGLG00000040093
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Guinea pig	MODERN SPECIES	2	ANKRD13C (ENSCPOG00000009559)	SRSF11 (ENSCPOG00000009554)	LRRC40 (ENSCPOG00000009536)	LRRC7 (ENSCPOG00000009529)	ENSCPOG00000024331	DEPDC1 (ENSCPOG00000013839) #7	RPE65 (ENSCPOG00000013831) #8	WLS (ENSCPOG00000012423) #9	GNG12 (ENSCPOG00000036301)	GADD45A (ENSCPOG00000005810) #12	SERBP1 (ENSCPOG00000020069) #13	ENSCPOG00000027017 #18	SLC35D1 (ENSCPOG00000030853) #19	MIER1 (ENSCPOG00000014165) #20	ENSCPOG00000014157 #21	INSL5 (ENSCPOG00000011735) #22	DYNLT5 (ENSCPOG00000014156) #23	SGIP1 (ENSCPOG00000012044) #24	PDE4B (ENSCPOG00000011698) #25	LEPR (ENSCPOG00000015030) #26	LEPROT (ENSCPOG00000033712) #27	DNAJC6 (ENSCPOG00000008733) #28	ENSCPOG00000037978 #29	JAK1 (ENSCPOG00000005991) #30	RAVER2 (ENSCPOG00000005986) #31	CACHD1 (ENSCPOG00000011700) #33	ENSCPOG00000010304 #34	ROR1 (ENSCPOG00000034531) #36	PGM1 (ENSCPOG00000022261)	EFCAB7 (ENSCPOG00000015458)	ITGB3BP (ENSCPOG00000034564)
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Rabbit	MODERN SPECIES	4	WLS (ENSOCUG00000000532) #9	ENSOCUG00000024881 #10	GNG12 (ENSOCUG00000024324)	GADD45A (ENSOCUG00000008954) #12	SERBP1 (ENSOCUG00000008946) #13	IL12RB2 (ENSOCUG00000008934) #15	ENSOCUG00000008927	IL23R (ENSOCUG00000008918) #17	ENSOCUG00000035679	ENSOCUG00000037276	C1orf141 (ENSOCUG00000012268) #18	SLC35D1 (ENSOCUG00000015456) #19	MIER1 (ENSOCUG00000015438) #20	DNAI4 (ENSOCUG00000021747) #21	ENSOCUG00000034617	INSL5 (ENSOCUG00000004666) #22	DYNLT5 (ENSOCUG00000004662) #23	SGIP1 (ENSOCUG00000027478) #24	PDE4B (ENSOCUG00000006508) #25	ENSOCUG00000027060	LEPR (ENSOCUG00000017347) #26	LEPROT (ENSOCUG00000022449) #27	DNAJC6 (ENSOCUG00000010020) #28	ENSOCUG00000010012 #29	JAK1 (ENSOCUG00000006227) #30	RAVER2 (ENSOCUG00000006221) #31	CACHD1 (ENSOCUG00000015532) #33	ENSOCUG00000003109	UBE2U (ENSOCUG00000000932) #34	ROR1 (ENSOCUG00000023790) #36	ENSOCUG00000031933
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Suina	ANCESTRAL SPECIES	27	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00940000153733.B
Chacoan peccary	MODERN SPECIES	54	LRRC7 (ENSCWAG00000007628)	DEPDC1 (ENSCWAG00000008223) #7	RPE65 (ENSCWAG00000005759) #8	WLS (ENSCWAG00000005902) #9	DIRAS3 (ENSCWAG00000006110) #10	GNG12 (ENSCWAG00000006121)	GADD45A (ENSCWAG00000006162) #12	SERBP1 (ENSCWAG00000006245) #13	IL12RB2 (ENSCWAG00000006311) #15	IL23R (ENSCWAG00000006836) #17	ENSCWAG00000006960 #18	SLC35D1 (ENSCWAG00000006999) #19	MIER1 (ENSCWAG00000007093) #20	ENSCWAG00000007755	ENSCWAG00000007769 #21	INSL5 (ENSCWAG00000007785) #22	DYNLT5 (ENSCWAG00000007809) #23	SGIP1 (ENSCWAG00000007878) #24	PDE4B (ENSCWAG00000008615) #25	LEPR (ENSCWAG00000009654) #26	LEPROT (ENSCWAG00000009749) #27	DNAJC6 (ENSCWAG00000009899) #28	ENSCWAG00000010175 #29	JAK1 (ENSCWAG00000010234) #30	RAVER2 (ENSCWAG00000010298) #31	CACHD1 (ENSCWAG00000010433) #33	ENSCWAG00000010798 #34	ROR1 (ENSCWAG00000010877) #36	PGM1 (ENSCWAG00000011042)	EFCAB7 (ENSCWAG00000011246)	ALG6 (ENSCWAG00000011295)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Cetacea	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000154169.A.l	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Odontoceti	ANCESTRAL SPECIES	55															ENSGT00910000148039.a.b	ENSGT00940000154396.b.b #22
Odontoceti_a	ANCESTRAL SPECIES	58															ENSGT00910000148039.a.b	ENSGT00940000154396.b.b #22
Odontoceti_b	ANCESTRAL SPECIES	44															ENSGT00910000148039.a.b	ENSGT00940000154396.b.b #22
Vaquita	MODERN SPECIES		LRRC7 (ENSPSNG00000000776)	DEPDC1 (ENSPSNG00000000663) #7	RPE65 (ENSPSNG00000000590) #8	WLS (ENSPSNG00000000517) #9	DIRAS3 (ENSPSNG00000000480) #10	GNG12 (ENSPSNG00000000467)	GADD45A (ENSPSNG00000000436) #12	SERBP1 (ENSPSNG00000000393) #13	IL12RB2 (ENSPSNG00000000245) #15	IL23R (ENSPSNG00000000116) #17	ENSPSNG00000000087	SLC35D1 (ENSPSNG00000000078) #19	MIER1 (ENSPSNG00000000044) #20	ENSPSNG00000000018	DNAI4 (ENSPSNG00000003982) #21	INSL5 (ENSPSNG00000003955) #22	DYNLT5 (ENSPSNG00000003942) #23	SGIP1 (ENSPSNG00000003872) #24	ENSPSNG00000003826	PDE4B (ENSPSNG00000003736) #25	LEPR (ENSPSNG00000003546) #26	LEPROT (ENSPSNG00000003475) #27	DNAJC6 (ENSPSNG00000003393) #28	ENSPSNG00000003320	ENSPSNG00000003300	ENSPSNG00000003289 #29	ENSPSNG00000003270	ENSPSNG00000003242	JAK1 (ENSPSNG00000003215) #30	RAVER2 (ENSPSNG00000003159) #31	CACHD1 (ENSPSNG00000003080) #33
Monodontidae	ANCESTRAL SPECIES	53															ENSGT00910000148039.a.b	ENSGT00940000154396.b.b #22
Narwhal	MODERN SPECIES	304	LRRC7 (ENSMMNG00015008751)	DEPDC1 (ENSMMNG00015010717) #7	RPE65 (ENSMMNG00015011109) #8	WLS (ENSMMNG00015011864) #9	DIRAS3 (ENSMMNG00015012826) #10	GNG12 (ENSMMNG00015012942)	GADD45A (ENSMMNG00015013267) #12	SERBP1 (ENSMMNG00015013615) #13	IL12RB2 (ENSMMNG00015014038) #15	IL23R (ENSMMNG00015014588) #17	ENSMMNG00015015024	SLC35D1 (ENSMMNG00015015256) #19	MIER1 (ENSMMNG00015015671) #20	DNAI4 (ENSMMNG00015017222) #21	ENSMMNG00015018080	INSL5 (ENSMMNG00015018236) #22	DYNLT5 (ENSMMNG00015018432) #23	SGIP1 (ENSMMNG00015018941) #24	PDE4B (ENSMMNG00015020127) #25	ENSMMNG00015021196	LEPR (ENSMMNG00015021685) #26	ENSMMNG00015021954 #27	DNAJC6 (ENSMMNG00015022012) #28	ENSMMNG00015022054 #29	ENSMMNG00015022062	ENSMMNG00015022063	ENSMMNG00015022064	ENSMMNG00015022065	JAK1 (ENSMMNG00015022067) #30	RAVER2 (ENSMMNG00015022068) #31	CACHD1 (ENSMMNG00015022069) #33
Dolphin	MODERN SPECIES	3645											IL23R (ENSTTRG00000009453) #17	C1orf141 (ENSTTRG00000009449) #18	SLC35D1 (ENSTTRG00000009447) #19	MIER1 (ENSTTRG00000009439) #20	DNAI4 (ENSTTRG00000009427) #21	INSL5 (ENSTTRG00000009424) #22	DYNLT5 (ENSTTRG00000009420) #23	SGIP1 (ENSTTRG00000009390) #24
Sperm whale	MODERN SPECIES	15	LRRC7 (ENSPCTG00005010553)	DEPDC1 (ENSPCTG00005012486) #7	RPE65 (ENSPCTG00005013056) #8	WLS (ENSPCTG00005013653) #9	DIRAS3 (ENSPCTG00005014188) #10	GNG12 (ENSPCTG00005014267)	GADD45A (ENSPCTG00005014488) #12	SERBP1 (ENSPCTG00005014874) #13	IL12RB2 (ENSPCTG00005015758) #15	IL23R (ENSPCTG00005017307) #17	ENSPCTG00005017739	SLC35D1 (ENSPCTG00005017949) #19	MIER1 (ENSPCTG00005018555) #20	DNAI4 (ENSPCTG00005019453) #21	ENSPCTG00005019975	INSL5 (ENSPCTG00005020021) #22	TCTEX1D1 (ENSPCTG00005020131) #23	SGIP1 (ENSPCTG00005020468) #24	ENSPCTG00005020806	PDE4B (ENSPCTG00005021109) #25	LEPR (ENSPCTG00005022108) #26	LEPROT (ENSPCTG00005022488) #27	DNAJC6 (ENSPCTG00005022551) #28	AK4 (ENSPCTG00005022622) #29	ENSPCTG00005022639	JAK1 (ENSPCTG00005022651) #30	RAVER2 (ENSPCTG00005022653) #31	CACHD1 (ENSPCTG00005022667) #33	UBE2U (ENSPCTG00005022676) #34	ROR1 (ENSPCTG00005022678) #36	EFCAB7 (ENSPCTG00005022682)
Blue whale	MODERN SPECIES		LRRC40 (ENSBMSG00010004930)	LRRC7 (ENSBMSG00010004781)	DEPDC1 (ENSBMSG00010004720) #7	RPE65 (ENSBMSG00010004694) #8	WLS (ENSBMSG00010004687) #9	ENSBMSG00010004680 #10	GNG12 (ENSBMSG00010004664)	GADD45A (ENSBMSG00010004628) #12	ENSBMSG00010004579 #13	IL12RB2 (ENSBMSG00010004316) #15	IL23R (ENSBMSG00010004266) #17	ENSBMSG00010004253	SLC35D1 (ENSBMSG00010004244) #19	MIER1 (ENSBMSG00010004136) #20	DNAI4 (ENSBMSG00010004008) #21	INSL5 (ENSBMSG00010003985) #22	DYNLT5 (ENSBMSG00010003974) #23	SGIP1 (ENSBMSG00010003712) #24	PDE4B (ENSBMSG00010003487) #25	LEPR (ENSBMSG00010003228) #26	LEPROT (ENSBMSG00010003180) #27	DNAJC6 (ENSBMSG00010003114) #28	ENSBMSG00010003088	ENSBMSG00010003064 #29	ENSBMSG00010003053	ENSBMSG00010003046	JAK1 (ENSBMSG00010002874) #30	RAVER2 (ENSBMSG00010002835) #31	CACHD1 (ENSBMSG00010002730) #33	UBE2U (ENSBMSG00010002698) #34	ROR1 (ENSBMSG00010002655) #36
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	ENSCHYG00000024521 #21	ENSCHYG00000024658 #22	ENSCHYG00000024671 #23	ENSCHYG00000024702 #24	ENSCHYG00000024798 #25	ENSCHYG00000025006	ENSCHYG00000025023	GADD45A (ENSCHYG00000025045) #12	ENSCHYG00000025061 #13	ENSCHYG00000025088 #15	ENSCHYG00000025152 #17	C1orf141 (ENSCHYG00000025159) #18	ENSCHYG00000025173 #19	ENSCHYG00000025223 #20	ENSCHYG00000025382 #21	ENSCHYG00000025570 #22	ENSCHYG00000025582 #23	ENSCHYG00000025647 #24	ENSCHYG00000025882 #25	ENSCHYG00000025911	ENSCHYG00000025927	ENSCHYG00000025967 #26	ENSCHYG00000026022 #27	ENSCHYG00000026111 #28	ENSCHYG00000026535 #29	ENSCHYG00000026545	ENSCHYG00000007291 #30	ENSCHYG00000007379 #31	ENSCHYG00000007533 #33	ENSCHYG00000007738 #26	ENSCHYG00000007822 #27
Yarkand deer	MODERN SPECIES	12	DEPDC1 (ENSCHYG00000022371) #7	RPE65 (ENSCHYG00000022637) #8	ENSCHYG00000022731	WLS (ENSCHYG00000022810) #9	DIRAS3 (ENSCHYG00000023484) #10	ENSCHYG00000023503	ENSCHYG00000023560 #12	ENSCHYG00000023662 #13	ENSCHYG00000023866 #15	ENSCHYG00000023995 #17	ENSCHYG00000024006 #17	ENSCHYG00000024039	ENSCHYG00000024060 #19	ENSCHYG00000024134 #20	ENSCHYG00000024521 #21	ENSCHYG00000024658 #22	ENSCHYG00000024671 #23	ENSCHYG00000024702 #24	ENSCHYG00000024798 #25	ENSCHYG00000025006	ENSCHYG00000025023	GADD45A (ENSCHYG00000025045) #12	ENSCHYG00000025061 #13	ENSCHYG00000025088 #15	ENSCHYG00000025152 #17	C1orf141 (ENSCHYG00000025159) #18	ENSCHYG00000025173 #19	ENSCHYG00000025223 #20	ENSCHYG00000025382 #21	ENSCHYG00000025570 #22	ENSCHYG00000025582 #23
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Rambouillet Sheep	MODERN SPECIES		LRRC40 (ENSOARG00020012472)	LRRC7 (ENSOARG00020011350)	DEPDC1 (ENSOARG00020010867) #7	RPE65 (ENSOARG00020010689) #8	WLS (ENSOARG00020010326) #9	DIRAS3 (ENSOARG00020010267) #10	GNG12 (ENSOARG00020010213)	GADD45A (ENSOARG00020009930) #12	SERBP1 (ENSOARG00020009805) #13	IL12RB2 (ENSOARG00020009558) #15	IL23R (ENSOARG00020009278) #17	C1orf141 (ENSOARG00020009212) #18	SLC35D1 (ENSOARG00020009073) #19	MIER1 (ENSOARG00020008644) #20	DNAI4 (ENSOARG00020008367) #21	INSL5 (ENSOARG00020008319) #22	DYNLT5 (ENSOARG00020008255) #23	ENSOARG00020008215	SGIP1 (ENSOARG00020007630) #24	PDE4B (ENSOARG00020007182) #25	LEPR (ENSOARG00020006509) #26	LEPROT (ENSOARG00020026025) #27	DNAJC6 (ENSOARG00020025984) #28	ENSOARG00020025972 #29	JAK1 (ENSOARG00020025959) #30	RAVER2 (ENSOARG00020025947) #31	CACHD1 (ENSOARG00020025918) #33	UBE2U (ENSOARG00020025900) #34	ROR1 (ENSOARG00020025892) #36	ITGB3BP (ENSOARG00020025849)	ALG6 (ENSOARG00020025843)
Goat	MODERN SPECIES	22	LRRC7 (ENSCHIG00000026785)	DEPDC1 (ENSCHIG00000010008) #7	RPE65 (ENSCHIG00000023075) #8	ENSCHIG00000008135	WLS (ENSCHIG00000015817) #9	GNG12 (ENSCHIG00000015506)	GADD45A (ENSCHIG00000025537) #12	ENSCHIG00000011544	SERBP1 (ENSCHIG00000026670) #13	IL12RB2 (ENSCHIG00000026777) #15	IL23R (ENSCHIG00000023744) #17	C1orf141 (ENSCHIG00000027076) #18	SLC35D1 (ENSCHIG00000026528) #19	MIER1 (ENSCHIG00000017898) #20	DNAI4 (ENSCHIG00000003835) #21	INSL5 (ENSCHIG00000016279) #22	DYNLT5 (ENSCHIG00000025637) #23	SGIP1 (ENSCHIG00000011387) #24	ENSCHIG00000026828	PDE4B (ENSCHIG00000007288) #25	ENSCHIG00000026640	LEPR (ENSCHIG00000023226) #26	LEPROT (ENSCHIG00000010872) #27	DNAJC6 (ENSCHIG00000027196) #28	ENSCHIG00000007647 #29	ENSCHIG00000003262	JAK1 (ENSCHIG00000012708) #30	ENSCHIG00000022704	RAVER2 (ENSCHIG00000005514) #31	CACHD1 (ENSCHIG00000012365) #33	UBE2U (ENSCHIG00000018663) #34
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198.c #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Bos	ANCESTRAL SPECIES		ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00940000161805.p.a.b	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198.c #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568.u #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000182976.b.a #7	ENSGT00940000161805.p.a.b	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b.e	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198.c #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00400000022103.a.jb.a	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a.i.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.u #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Cow	MODERN SPECIES	22	DEPDC1 (ENSBTAG00000001343) #7	ENSBTAG00000030890	RPE65 (ENSBTAG00000020494) #8	WLS (ENSBTAG00000012976) #9	DIRAS3 (ENSBTAG00000012182) #10	GNG12 (ENSBTAG00000054533)	GADD45A (ENSBTAG00000013860) #12	SERBP1 (ENSBTAG00000012957) #13	IL12RB2 (ENSBTAG00000009455) #15	IL23R (ENSBTAG00000014983) #17	C3H1orf141 (ENSBTAG00000030809) #18	SLC35D1 (ENSBTAG00000005445) #19	MIER1 (ENSBTAG00000005443) #20	DNAI4 (ENSBTAG00000005442) #21	ENSBTAG00000049696	INSL5 (ENSBTAG00000003850) #22	DYNLT5 (ENSBTAG00000011097) #23	SGIP1 (ENSBTAG00000011091) #24	PDE4B (ENSBTAG00000008636) #25	MGC137454 (ENSBTAG00000030852)	LEPR (ENSBTAG00000005910) #26	LEPROT (ENSBTAG00000005909) #27	DNAJC6 (ENSBTAG00000030749) #28	AK4 (ENSBTAG00000030674) #29	JAK1 (ENSBTAG00000003147) #30	RAVER2 (ENSBTAG00000030686) #31	CACHD1 (ENSBTAG00000016455) #33	UBE2U (ENSBTAG00000040268) #34	ROR1 (ENSBTAG00000012312) #36	PGM1 (ENSBTAG00000019011)	EFCAB7 (ENSBTAG00000002600)
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005006675	DEPDC1 (ENSBIXG00005023771) #7	ENSBIXG00005023720	RPE65 (ENSBIXG00005023709) #8	WLS (ENSBIXG00005023640) #9	DIRAS3 (ENSBIXG00005023520) #10	GADD45A (ENSBIXG00005023475) #12	SERBP1 (ENSBIXG00005023375) #13	IL12RB2 (ENSBIXG00005023295) #15	ENSBIXG00005023212 #18	IL23R (ENSBIXG00005023197) #17	SLC35D1 (ENSBIXG00005023139) #19	MIER1 (ENSBIXG00005003930) #20	DNAI4 (ENSBIXG00005022849) #21	ENSBIXG00005022763	INSL5 (ENSBIXG00005022735) #22	DYNLT5 (ENSBIXG00005003891) #23	SGIP1 (ENSBIXG00005022689) #24	ENSBIXG00005022613	PDE4B (ENSBIXG00005022555) #25	LEPR (ENSBIXG00005006516) #26	ENSBIXG00005005878 #27	DNAJC6 (ENSBIXG00005022150) #28	ENSBIXG00005022063 #29	ENSBIXG00005022017	JAK1 (ENSBIXG00005021985) #30	RAVER2 (ENSBIXG00005003691) #31	ENSBIXG00005006461	CACHD1 (ENSBIXG00005021823) #33	UBE2U (ENSBIXG00005021577) #34	ENSBIXG00005000011
Bos_a	ANCESTRAL SPECIES	1	ENSGT00390000005897 #9	ENSGT01100000263497.E.b.e	ENSGT00940000164094 #10	ENSGT00390000001618.cb.b	ENSGT00390000000378.d.b.fb.b.c.h	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198.c #17	ENSGT00530000064198.d #17	ENSGT00390000014549.g	ENSGT00990000205383	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00390000017491.t.t.a.b	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a.j #27	ENSGT00940000158755 #28	ENSGT00940000154568.u #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Wild yak	MODERN SPECIES	754	ENSBMUG00000010359	ENSBMUG00000010367	GADD45A (ENSBMUG00000010401) #12	SERBP1 (ENSBMUG00000010422) #13	IL12RB2 (ENSBMUG00000010519) #15	ENSBMUG00000010553 #17	ENSBMUG00000010567 #17	ENSBMUG00000010583	ENSBMUG00000010602	ENSBMUG00000010632	SLC35D1 (ENSBMUG00000010661) #19	MIER1 (ENSBMUG00000010808) #20	ENSBMUG00000010837 #21	ENSBMUG00000010843	ENSBMUG00000010869 #21	INSL5 (ENSBMUG00000010885) #22	DYNLT5 (ENSBMUG00000010909) #23	SGIP1 (ENSBMUG00000011032) #24	ENSBMUG00000011048	PDE4B (ENSBMUG00000011107) #25
Domestic yak	MODERN SPECIES	22	ENSBGRG00000008894	ENSBGRG00000008913	ENSBGRG00000008938	GADD45A (ENSBGRG00000008972) #12	SERBP1 (ENSBGRG00000009099) #13	IL12RB2 (ENSBGRG00000009248) #15	ENSBGRG00000009394	ENSBGRG00000009413 #17	ENSBGRG00000009440 #17	ENSBGRG00000009539	ENSBGRG00000009599	SLC35D1 (ENSBGRG00000009631) #19	MIER1 (ENSBGRG00000009812) #20	ENSBGRG00000010112	DNAI4 (ENSBGRG00000010128) #21	INSL5 (ENSBGRG00000010455) #22	DYNLT5 (ENSBGRG00000010507) #23	SGIP1 (ENSBGRG00000010617) #24	ENSBGRG00000011976	ENSBGRG00000012022	PDE4B (ENSBGRG00000012087) #25	LEPR (ENSBGRG00000012855) #26	LEPROT (ENSBGRG00000013090) #27	DNAJC6 (ENSBGRG00000013298) #28	ENSBGRG00000013984	ENSBGRG00000014003	ENSBGRG00000014022 #29	ENSBGRG00000014156	JAK1 (ENSBGRG00000014206) #30	RAVER2 (ENSBGRG00000014623) #31	CACHD1 (ENSBGRG00000014987) #33
American bison	MODERN SPECIES	3205					ENSBBBG00000001748	GADD45A (ENSBBBG00000008738) #12	SERBP1 (ENSBBBG00000012876) #13	IL12RB2 (ENSBBBG00000012971) #15	ENSBBBG00000002584 #17	ENSBBBG00000013005 #17	ENSBBBG00000013013	SLC35D1 (ENSBBBG00000013026) #19	MIER1 (ENSBBBG00000002617) #20	ENSBBBG00000013078	DNAI4 (ENSBBBG00000013096) #21	INSL5 (ENSBBBG00000002632) #22	DYNLT5 (ENSBBBG00000001674) #23	ENSBBBG00000013111	SGIP1 (ENSBBBG00000002670) #24	PDE4B (ENSBBBG00000002710) #25	LEPR (ENSBBBG00000013462) #26	LEPROT (ENSBBBG00000013493) #27	DNAJC6 (ENSBBBG00000013528) #28	ENSBBBG00000007935	ENSBBBG00000013538	ENSBBBG00000013550 #29
Siberian musk deer	MODERN SPECIES	339	LRRC7 (ENSMMSG00000004578)	DEPDC1 (ENSMMSG00000005154) #7	RPE65 (ENSMMSG00000005215) #8	ENSMMSG00000005268	WLS (ENSMMSG00000005308) #9	DIRAS3 (ENSMMSG00000005467) #10	GNG12 (ENSMMSG00000005481)	GADD45A (ENSMMSG00000005535) #12	ENSMMSG00000005637 #13	IL12RB2 (ENSMMSG00000005957) #15	IL23R (ENSMMSG00000006578) #17	ENSMMSG00000006661	SLC35D1 (ENSMMSG00000006681) #19	MIER1 (ENSMMSG00000006725) #20	DNAI4 (ENSMMSG00000006873) #21	INSL5 (ENSMMSG00000007080) #22	DYNLT5 (ENSMMSG00000007108) #23	SGIP1 (ENSMMSG00000007149) #24	ENSMMSG00000007256	PDE4B (ENSMMSG00000007306) #25	LEPR (ENSMMSG00000007649) #26	LEPROT (ENSMMSG00000007926) #27	ENSMMSG00000007989 #28	ENSMMSG00000008200 #29	ENSMMSG00000008256	JAK1 (ENSMMSG00000008290) #30	RAVER2 (ENSMMSG00000008514) #31	CACHD1 (ENSMMSG00000008645) #33	UBE2U (ENSMMSG00000008852) #34	ROR1 (ENSMMSG00000008912) #36	PGM1 (ENSMMSG00000009049)
Camelidae	ANCESTRAL SPECIES	11	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00990000205383	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Arabian camel	MODERN SPECIES	4	LRRC40 (ENSCDRG00005008600)	LRRC7 (ENSCDRG00005008143)	DEPDC1 (ENSCDRG00005008010) #7	RPE65 (ENSCDRG00005007822) #8	WLS (ENSCDRG00005007433) #9	DIRAS3 (ENSCDRG00005007399) #10	GNG12 (ENSCDRG00005007385)	GADD45A (ENSCDRG00005007265) #12	SERBP1 (ENSCDRG00005007209) #13	IL12RB2 (ENSCDRG00005006997) #15	IL23R (ENSCDRG00005006826) #17	ENSCDRG00005006792	SLC35D1 (ENSCDRG00005006715) #19	MIER1 (ENSCDRG00005006406) #20	DNAI4 (ENSCDRG00005006212) #21	INSL5 (ENSCDRG00005006189) #22	DYNLT5 (ENSCDRG00005006169) #23	SGIP1 (ENSCDRG00005005920) #24	PDE4B (ENSCDRG00005005526) #25	ENSCDRG00005005483	LEPR (ENSCDRG00005005388) #26	LEPROT (ENSCDRG00005005302) #27	DNAJC6 (ENSCDRG00005004711) #28	ENSCDRG00005004652 #29	JAK1 (ENSCDRG00005004601) #30	ENSCDRG00005004583	RAVER2 (ENSCDRG00005004547) #31	CACHD1 (ENSCDRG00005004143) #33	UBE2U (ENSCDRG00005003953) #34	ROR1 (ENSCDRG00005003848) #36	PGM1 (ENSCDRG00005003722)
Alpaca	MODERN SPECIES	50									SERBP1 (ENSVPAG00000000923) #13	IL12RB2 (ENSVPAG00000000922) #15	IL23R (ENSVPAG00000000921) #17	ENSVPAG00000000920	SLC35D1 (ENSVPAG00000000919) #19	MIER1 (ENSVPAG00000000918) #20	DNAI4 (ENSVPAG00000000917) #21	INSL5 (ENSVPAG00000000916) #22	DYNLT5 (ENSVPAG00000000915) #23	SGIP1 (ENSVPAG00000000914) #24
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Greater horseshoe bat	MODERN SPECIES	27	LRRC7 (ENSRFEG00010004869)	ENSRFEG00010004831	ENSRFEG00010004819	DEPDC1 (ENSRFEG00010004806) #7	RPE65 (ENSRFEG00010004778) #8	WLS (ENSRFEG00010004748) #9	DIRAS3 (ENSRFEG00010004732) #10	GADD45A (ENSRFEG00010004705) #12	ENSRFEG00010004678 #13	IL12RB2 (ENSRFEG00010004653) #15	IL23R (ENSRFEG00010004610) #17	C1orf141 (ENSRFEG00010004583) #18	SLC35D1 (ENSRFEG00010004543) #19	MIER1 (ENSRFEG00010004493) #20	DNAI4 (ENSRFEG00010004457) #21	INSL5 (ENSRFEG00010004442) #22	DYNLT5 (ENSRFEG00010004431) #23	SGIP1 (ENSRFEG00010004327) #24	ENSRFEG00010004239	PDE4B (ENSRFEG00010004177) #25	LEPR (ENSRFEG00010004114) #26	LEPROT (ENSRFEG00010004090) #27	DNAJC6 (ENSRFEG00010003981) #28	ENSRFEG00010003929 #29	JAK1 (ENSRFEG00010003864) #30	RAVER2 (ENSRFEG00010003831) #31	CACHD1 (ENSRFEG00010003774) #33	ENSRFEG00010003748 #34	ROR1 (ENSRFEG00010003713) #36	PGM1 (ENSRFEG00010003661)	EFCAB7 (ENSRFEG00010003607)
Megabat	MODERN SPECIES	1419											IL23R (ENSPVAG00000017656) #17	C1orf141 (ENSPVAG00000017655) #18	SLC35D1 (ENSPVAG00000017653) #19	MIER1 (ENSPVAG00000017652) #20	DNAI4 (ENSPVAG00000017650) #21	INSL5 (ENSPVAG00000017649) #22	DYNLT5 (ENSPVAG00000017648) #23
Equus	ANCESTRAL SPECIES	3	ENSGT00940000165286	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665.j #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Donkey	MODERN SPECIES	7	ENSEASG00005007851	ENSEASG00005007856	DEPDC1 (ENSEASG00005007861) #7	RPE65 (ENSEASG00005007863) #8	WLS (ENSEASG00005007867) #9	DIRAS3 (ENSEASG00005038197) #10	GNG12 (ENSEASG00005007872)	GADD45A (ENSEASG00005024228) #12	SERBP1 (ENSEASG00005007881) #13	IL12RB2 (ENSEASG00005007885) #15	IL23R (ENSEASG00005007895) #17	C1orf141 (ENSEASG00005007907) #18	SLC35D1 (ENSEASG00005028888) #19	MIER1 (ENSEASG00005007916) #20	DNAI4 (ENSEASG00005007939) #21	INSL5 (ENSEASG00005024533) #22	DYNLT5 (ENSEASG00005037593) #23	SGIP1 (ENSEASG00005007954) #24	PDE4B (ENSEASG00005007980) #25	ENSEASG00005026002 #25	LEPR (ENSEASG00005008026) #26	LEPROT (ENSEASG00005037559) #27	DNAJC6 (ENSEASG00005008132) #28	ENSEASG00005008138 #29	JAK1 (ENSEASG00005008150) #30	RAVER2 (ENSEASG00005008158) #31	CACHD1 (ENSEASG00005008161) #33	ENSEASG00005008165	ENSEASG00005020139	ENSEASG00005008168 #34	ROR1 (ENSEASG00005008170) #36
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Xenarthra	ANCESTRAL SPECIES	39	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00950000183297	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36
Sloth	MODERN SPECIES	11324																INSL5 (ENSCHOG00000009863) #22
Armadillo	MODERN SPECIES	4628	LRRC40 (ENSDNOG00000001807)	LRRC7 (ENSDNOG00000001801)	DEPDC1 (ENSDNOG00000040135) #7	RPE65 (ENSDNOG00000037707) #8	WLS (ENSDNOG00000003500) #9	DIRAS3 (ENSDNOG00000039860) #10	GNG12 (ENSDNOG00000040556)	GADD45A (ENSDNOG00000038488) #12	SERBP1 (ENSDNOG00000014249) #13	IL12RB2 (ENSDNOG00000007767) #15	IL23R (ENSDNOG00000008682) #17	C1orf141 (ENSDNOG00000031369) #18	SLC35D1 (ENSDNOG00000013582) #19	ENSDNOG00000013550 #20	DNAI4 (ENSDNOG00000015107) #21	INSL5 (ENSDNOG00000045210) #22	DYNLT5 (ENSDNOG00000039350) #23	SGIP1 (ENSDNOG00000015078) #24	PDE4B (ENSDNOG00000034108) #25	ENSDNOG00000033832	ENSDNOG00000044101	LEPR (ENSDNOG00000004616) #26	LEPROT (ENSDNOG00000024822) #27	DNAJC6 (ENSDNOG00000004371) #28	ENSDNOG00000006630 #29	JAK1 (ENSDNOG00000012151) #30	RAVER2 (ENSDNOG00000012130) #31	CACHD1 (ENSDNOG00000012097) #33	ENSDNOG00000044951	UBE2U (ENSDNOG00000042797) #34	ROR1 (ENSDNOG00000033892) #36
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00390000005897 #9	ENSGT00940000164094 #10	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00390000010146 #18	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00940000153733.B
Hyrax	MODERN SPECIES	1516														MIER1 (ENSPCAG00000010858) #20	DNAI4 (ENSPCAG00000010710) #21	INSL5 (ENSPCAG00000010668) #22	DYNLT5 (ENSPCAG00000010608) #23	SGIP1 (ENSPCAG00000010436) #24
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897.c #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897.c #9	ENSGT00390000005897.d #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190.m.a #25	ENSGT00950000183297	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b
Emydidae	ANCESTRAL SPECIES	22	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897.c #9	ENSGT00390000005897.d #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190.m.a #25	ENSGT00950000183297	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	98	ENSTMTG00000009190	ENSTMTG00000009545 #7	ENSTMTG00000009586 #8	ENSTMTG00000009639	ENSTMTG00000009688 #9	ENSTMTG00000009792 #9	ENSTMTG00000009811	ENSTMTG00000009824	ENSTMTG00000009844 #12	ENSTMTG00000009876 #13	ENSTMTG00000009954 #15	ENSTMTG00000010078 #17	ENSTMTG00000010362 #19	ENSTMTG00000010406 #20	ENSTMTG00000010442 #21	ENSTMTG00000010523 #22	ENSTMTG00000010570 #23	ENSTMTG00000010614 #24	ENSTMTG00000010706 #25	ENSTMTG00000010870	ENSTMTG00000011103 #26	ENSTMTG00000012656 #27	ENSTMTG00000013045 #28	ENSTMTG00000016067 #29	ENSTMTG00000016096 #30	ENSTMTG00000016139 #31	ENSTMTG00000016205 #33	ENSTMTG00000016442 #34	ENSTMTG00000016476 #36	ENSTMTG00000016515	ENSTMTG00000016529
Three-toed box turtle	MODERN SPECIES	97	ENSTMTG00000017770	ENSTMTG00000018021 #7	ENSTMTG00000018043 #8	ENSTMTG00000018066	ENSTMTG00000018084 #9	ENSTMTG00000018147 #9	ENSTMTG00000018157	ENSTMTG00000018159	ENSTMTG00000018165 #12	ENSTMTG00000018169 #13	ENSTMTG00000018185 #15	ENSTMTG00000018248 #17	ENSTMTG00000018319 #19	ENSTMTG00000018339 #20	ENSTMTG00000018360 #21	ENSTMTG00000018437 #22	ENSTMTG00000018459 #23	ENSTMTG00000018482 #24	ENSTMTG00000018590 #25	ENSTMTG00000019383	ENSTMTG00000019457 #26	ENSTMTG00000020147 #27	ENSTMTG00000020247 #28	ENSTMTG00000021372 #29	ENSTMTG00000021386 #30	ENSTMTG00000021399 #31	ENSTMTG00000021422 #33	ENSTMTG00000021492 #34	ENSTMTG00000021497 #36	ENSTMTG00000021506	ENSTMTG00000021518
painted turtle	MODERN SPECIES	17	PGGT1B (ENSCPBG00000001628)	TRIM36 (ENSCPBG00000001598)	DEPDC1 (ENSCPBG00000001578) #7	RPE65 (ENSCPBG00000001561) #8	ENSCPBG00000001531	WLS (ENSCPBG00000001513) #9	ENSCPBG00000001504	GADD45A (ENSCPBG00000001491) #12	GNG12 (ENSCPBG00000001480)	SERBP1 (ENSCPBG00000001466) #13	ENSCPBG00000001453 #15	IL23R (ENSCPBG00000001413) #17	SLC35D1 (ENSCPBG00000001385) #19	MIER1 (ENSCPBG00000001361) #20	DNAI4 (ENSCPBG00000001333) #21	ENSCPBG00000001269 #22	DYNLT5 (ENSCPBG00000001257) #23	SGIP1 (ENSCPBG00000001245) #24	PDE4B (ENSCPBG00000001215) #25	ENSCPBG00000001200	ENSCPBG00000001197	LEPR (ENSCPBG00000001180) #26	LEPROT (ENSCPBG00000001162) #27	DNAJC6 (ENSCPBG00000001130) #28	ENSCPBG00000001084 #29	JAK1 (ENSCPBG00000001053) #30	RAVER2 (ENSCPBG00000001015) #31	CACHD1 (ENSCPBG00000000916) #33	UBE2U (ENSCPBG00000000879) #34	ROR1 (ENSCPBG00000000862) #36	TTLL7 (ENSCPBG00000000823)
Testudinidae	ANCESTRAL SPECIES	33												ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190.m.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Goode s thornscrub tortoise	MODERN SPECIES	22	LRRC7 (ENSGEVG00005005345)	DEPDC1 (ENSGEVG00005005637) #7	RPE65 (ENSGEVG00005005697) #8	ENSGEVG00005005750	ENSGEVG00005005805 #9	ENSGEVG00005005866 #9	ENSGEVG00005005887	GNG12 (ENSGEVG00005005904)	GADD45A (ENSGEVG00005005928) #12	SERBP1 (ENSGEVG00005005956) #13	ENSGEVG00005006067 #15	IL23R (ENSGEVG00005006310) #17	SLC35D1 (ENSGEVG00005006506) #19	MIER1 (ENSGEVG00005006531) #20	DNAI4 (ENSGEVG00005006591) #21	ENSGEVG00005006742 #22	DYNLT5 (ENSGEVG00005006764) #23	SGIP1 (ENSGEVG00005006796) #24	ENSGEVG00005006876 #25	ENSGEVG00005006928 #25	ENSGEVG00005006958	LEPR (ENSGEVG00005007099) #26	LEPROT (ENSGEVG00005007695) #27	DNAJC6 (ENSGEVG00005008265) #28	ENSGEVG00005011475 #29	JAK1 (ENSGEVG00005011508) #30	RAVER2 (ENSGEVG00005011582) #31	CACHD1 (ENSGEVG00005011807) #33	UBE2U (ENSGEVG00005012901) #34	ROR1 (ENSGEVG00005012980) #36	PGM1 (ENSGEVG00005013164)
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Aves	ANCESTRAL SPECIES	7	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Neognathae	ANCESTRAL SPECIES	8	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00730000110872.b.d	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00950000183297	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00730000110872.b.d	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00950000183297	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Great tit	MODERN SPECIES	28	SRSF11 (ENSPMJG00000012694)	ANKRD13C (ENSPMJG00000012634)	DEPDC1 (ENSPMJG00000012631) #7	RPE65 (ENSPMJG00000012367) #8	ENSPMJG00000012366	WLS (ENSPMJG00000012364) #9	ENSPMJG00000012363	GNG12 (ENSPMJG00000012362)	GADD45A (ENSPMJG00000012361) #12	SERBP1 (ENSPMJG00000012358) #13	ENSPMJG00000012357	ENSPMJG00000012356 #17	SLC35D1 (ENSPMJG00000012355) #19	MIER1 (ENSPMJG00000012354) #20	DNAI4 (ENSPMJG00000012353) #21	ENSPMJG00000012352 #22	DYNLT5 (ENSPMJG00000012351) #23	SGIP1 (ENSPMJG00000012350) #24	PDE4B (ENSPMJG00000012349) #25	LEPR (ENSPMJG00000012348) #26	LEPROT (ENSPMJG00000012347) #27	DNAJC6 (ENSPMJG00000012346) #28	ENSPMJG00000012345 #29	JAK1 (ENSPMJG00000012343) #30	RAVER2 (ENSPMJG00000012342) #31	CACHD1 (ENSPMJG00000012341) #33	ENSPMJG00000012339	ROR1 (ENSPMJG00000012338) #36	ENSPMJG00000012337	PGM1 (ENSPMJG00000012336)	EFCAB7 (ENSPMJG00000012335)
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.g.b #13	ENSGT00520000055591.a.h #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00950000183297	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.f #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00390000000312.r	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.g.b #13	ENSGT00520000055591.a.h #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00990000204555	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568.f #29	ENSGT00940000154568.e #29	ENSGT00940000157092.g #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.g.b #13	ENSGT00520000055591.a.h #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00990000204555	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755.o #28	ENSGT00940000154568.f #29	ENSGT00940000154568.e #29	ENSGT00940000157092.g #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Common canary	MODERN SPECIES	9	SRSF11 (ENSSCAG00000007908)	LRRC40 (ENSSCAG00000007651)	LRRC7 (ENSSCAG00000007607)	ENSSCAG00000007605 #8	DEPDC1 (ENSSCAG00000007602) #7	ENSSCAG00000007598	ENSSCAG00000007591	WLS (ENSSCAG00000007589) #9	ENSSCAG00000007587	GNG12 (ENSSCAG00000007586)	SERBP1 (ENSSCAG00000007585) #13	ENSSCAG00000007581 #15	SLC35D1 (ENSSCAG00000007571) #19	MIER1 (ENSSCAG00000007527) #20	ENSSCAG00000007520	ENSSCAG00000007516 #22	DYNLT5 (ENSSCAG00000007509) #23	SGIP1 (ENSSCAG00000007499) #24	PDE4B (ENSSCAG00000007072) #25	LEPR (ENSSCAG00000007012) #26	ENSSCAG00000007007 #36	LEPROT (ENSSCAG00000007003) #27	DNAJC6 (ENSSCAG00000006996) #28	ENSSCAG00000006982 #29	ROR1 (ENSSCAG00000006973) #36	ENSSCAG00000006966 #30	RAVER2 (ENSSCAG00000006952) #31	CACHD1 (ENSSCAG00000006858) #33	ENSSCAG00000006829 #30	ENSSCAG00000006819	PGM1 (ENSSCAG00000006814)
Flycatcher	MODERN SPECIES	27	LRRC40 (ENSFALG00000001226)	SRSF11 (ENSFALG00000001217)	ANKRD13C (ENSFALG00000028454)	ENSFALG00000013034	DEPDC1 (ENSFALG00000013009) #7	RPE65 (ENSFALG00000012996) #8	ENSFALG00000012976	WLS (ENSFALG00000012942) #9	ENSFALG00000023313	GNG12 (ENSFALG00000012927)	SERBP1 (ENSFALG00000028513) #13	ENSFALG00000020272	SLC35D1 (ENSFALG00000012853) #19	MIER1 (ENSFALG00000012825) #20	DNAI4 (ENSFALG00000012813) #21	ENSFALG00000014310 #22	SGIP1 (ENSFALG00000012810) #24	ENSFALG00000012778 #25	ENSFALG00000028654 #25	ENSFALG00000025173	LEPR (ENSFALG00000012729) #26	LEPROT (ENSFALG00000012714) #27	ENSFALG00000024596	DNAJC6 (ENSFALG00000012679) #28	ENSFALG00000027823 #29	JAK1 (ENSFALG00000012645) #30	ENSFALG00000024415 #31	ENSFALG00000026307 #31	CACHD1 (ENSFALG00000012622) #33	ROR1 (ENSFALG00000012605) #36	PGM1 (ENSFALG00000025774)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000160050.l	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000160050.l	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092.e #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00390000004336
Japanese quail	MODERN SPECIES	26	SRSF11 (ENSCJPG00005014523)	LRRC40 (ENSCJPG00005014522)	LRRC7 (ENSCJPG00005014521)	DEPDC1 (ENSCJPG00005014520) #7	RPE65 (ENSCJPG00005014519) #8	ENSCJPG00005014518	WLS (ENSCJPG00005014517) #9	GNG12 (ENSCJPG00005014515)	GADD45A (ENSCJPG00005014514) #12	SERBP1 (ENSCJPG00005014513) #13	ENSCJPG00005014511	IL12RB2 (ENSCJPG00005014510) #15	SLC35D1 (ENSCJPG00005014509) #19	MIER1 (ENSCJPG00005014508) #20	DNAI4 (ENSCJPG00005014507) #21	ENSCJPG00005014506 #22	DYNLT5 (ENSCJPG00005014505) #23	SGIP1 (ENSCJPG00005014504) #24	PDE4B (ENSCJPG00005014503) #25	LEPR (ENSCJPG00005014502) #26	LEPROT (ENSCJPG00005014501) #27	DNAJC6 (ENSCJPG00005014500) #28	ENSCJPG00005014499 #29	ENSCJPG00005014497	JAK1 (ENSCJPG00005014496) #30	RAVER2 (ENSCJPG00005014495) #31	CACHD1 (ENSCJPG00005014494) #33	ROR1 (ENSCJPG00005014492) #36	PGM1 (ENSCJPG00005014491)	EFCAB7 (ENSCJPG00005014490)	ENSCJPG00005014489
African ostrich	MODERN SPECIES	220	LRRC40 (ENSSCUG00000004277)	ENSSCUG00000004276	LRRC7 (ENSSCUG00000004275)	DEPDC1 (ENSSCUG00000004271) #7	RPE65 (ENSSCUG00000004270) #8	ENSSCUG00000004269	ENSSCUG00000004267 #9	ENSSCUG00000004266 #9	ENSSCUG00000004265	GNG12 (ENSSCUG00000004262)	SERBP1 (ENSSCUG00000004259) #13	IL12RB2 (ENSSCUG00000004258) #15	SLC35D1 (ENSSCUG00000004256) #19	MIER1 (ENSSCUG00000004254) #20	DNAI4 (ENSSCUG00000004248) #21	ENSSCUG00000004247 #22	ENSSCUG00000004241	PDE4B (ENSSCUG00000004240) #25	ENSSCUG00000004237	LEPR (ENSSCUG00000004230) #26	LEPROT (ENSSCUG00000004226) #27	DNAJC6 (ENSSCUG00000004221) #28	JAK1 (ENSSCUG00000004212) #30	RAVER2 (ENSSCUG00000004209) #31	CACHD1 (ENSSCUG00000004203) #33	UBE2U (ENSSCUG00000004193) #34	ROR1 (ENSSCUG00000004189) #36	PGM1 (ENSSCUG00000004179)	EFCAB7 (ENSSCUG00000004175)	ALG6 (ENSSCUG00000004174)	ITGB3BP (ENSSCUG00000004172)
Australian saltwater crocodile	MODERN SPECIES	28	DEPDC1 (ENSCPRG00005011831) #7	RPE65 (ENSCPRG00005011721) #8	ENSCPRG00005011710	WLS (ENSCPRG00005011645) #9	ENSCPRG00005011639	ENSCPRG00005011633	ENSCPRG00005011630	GNG12 (ENSCPRG00005011605)	GADD45A (ENSCPRG00005011603) #12	SERBP1 (ENSCPRG00005011598) #13	IL12RB2 (ENSCPRG00005011590) #15	IL23R (ENSCPRG00005011584) #17	SLC35D1 (ENSCPRG00005011523) #19	MIER1 (ENSCPRG00005011341) #20	DNAI4 (ENSCPRG00005011316) #21	ENSCPRG00005011307 #22	DYNLT5 (ENSCPRG00005011304) #23	SGIP1 (ENSCPRG00005011289) #24	PDE4B (ENSCPRG00005011137) #25	ENSCPRG00005011105	LEPR (ENSCPRG00005011098) #26	LEPROT (ENSCPRG00005011093) #27	DNAJC6 (ENSCPRG00005011081) #28	ENSCPRG00005011074 #29	JAK1 (ENSCPRG00005011063) #30	RAVER2 (ENSCPRG00005011054) #31	CACHD1 (ENSCPRG00005011034) #33	UBE2U (ENSCPRG00005011024) #34	ROR1 (ENSCPRG00005011020) #36	PGM1 (ENSCPRG00005011014)	EFCAB7 (ENSCPRG00005011001)
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Episquamata	ANCESTRAL SPECIES	1	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Laterata	ANCESTRAL SPECIES	3	ENSGT00730000110872.b.c	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a.e #13	ENSGT00940000159829 #15	ENSGT00530000064198 #17	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Argentine black and white tegu	MODERN SPECIES	31	LRRC40 (ENSSMRG00000020088)	LRRC7 (ENSSMRG00000020087)	DEPDC1 (ENSSMRG00000020085) #7	RPE65 (ENSSMRG00000019976) #8	ENSSMRG00000019975	WLS (ENSSMRG00000019974) #9	ENSSMRG00000019973	GNG12 (ENSSMRG00000019972)	GADD45A (ENSSMRG00000019971) #12	ENSSMRG00000019970 #13	ENSSMRG00000019969 #15	IL23R (ENSSMRG00000019968) #17	SLC35D1 (ENSSMRG00000019967) #19	MIER1 (ENSSMRG00000019966) #20	DNAI4 (ENSSMRG00000019965) #21	INSL5 (ENSSMRG00000019962) #22	DYNLT5 (ENSSMRG00000019961) #23	SGIP1 (ENSSMRG00000019959) #24	PDE4B (ENSSMRG00000019958) #25	ENSSMRG00000019957	LEPR (ENSSMRG00000019956) #26	LEPROT (ENSSMRG00000019955) #27	DNAJC6 (ENSSMRG00000019954) #28	ENSSMRG00000019953 #29	JAK1 (ENSSMRG00000018281) #30	RAVER2 (ENSSMRG00000018280) #31	CACHD1 (ENSSMRG00000018279) #33	ROR1 (ENSSMRG00000018278) #36	PGM1 (ENSSMRG00000018277)	EFCAB7 (ENSSMRG00000018276)	ITGB3BP (ENSSMRG00000018275)
Anura	ANCESTRAL SPECIES	17	ENSGT00950000182928.B.d.b	ENSGT00730000110872.b	ENSGT00940000156968	ENSGT00940000156262	ENSGT00950000182976.b.a #7	ENSGT00950000182913.B #8	ENSGT00940000164186.a	ENSGT00390000005897 #9	ENSGT01100000263497.E.b	ENSGT00950000182964.a.a #12	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466	ENSGT00940000153733.B
Frog	MODERN SPECIES	4	lrrc7 (ENSXETG00000012373)	depdc1 (ENSXETG00000012376) #7	rpe65 (ENSXETG00000012377) #8	XB5906919 [provisional:mccc2] (ENSXETG00000012378)	ENSXETG00000045331	wls (ENSXETG00000012387) #9	diras3 (ENSXETG00000012389)	gng12 (ENSXETG00000045302)	gadd45a (ENSXETG00000012392) #12	serbp1 (ENSXETG00000012394) #13	ENSXETG00000043084 #15	ENSXETG00000044095 #15	slc35d1 (ENSXETG00000043386) #19	mier1 (ENSXETG00000012401) #20	dnai4 (ENSXETG00000020368) #21	insl5 (ENSXETG00000036496) #22	dynlt5 (ENSXETG00000006790) #23	sgip1 (ENSXETG00000020369) #24	ENSXETG00000020373	pde4b (ENSXETG00000020374) #25	ENSXETG00000048079	lepr (ENSXETG00000020387) #26	ENSXETG00000047321	leprot (ENSXETG00000025603) #27	dnajc6 (ENSXETG00000020390) #28	ak4 (ENSXETG00000020392) #29	jak1 (ENSXETG00000020396) #30	raver2 (ENSXETG00000020406) #31	cachd1 (ENSXETG00000020410) #33	ENSXETG00000041559	ube2u (ENSXETG00000035592) #34
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000023950	WLS (ENSLLEG00000023556) #9	ENSLLEG00000023508	ENSLLEG00000023487	ENSLLEG00000023467	ENSLLEG00000023451	ENSLLEG00000023374	GADD45A (ENSLLEG00000023325) #12	ENSLLEG00000023300	ENSLLEG00000023073 #13	ENSLLEG00000022915 #15	ENSLLEG00000022648 #15	ENSLLEG00000022555	MIER1 (ENSLLEG00000022252) #20	DNAI4 (ENSLLEG00000021583) #21	INSL5 (ENSLLEG00000021504) #22	DYNLT5 (ENSLLEG00000021465) #23	SGIP1 (ENSLLEG00000021112) #24	ENSLLEG00000021059	PDE4B (ENSLLEG00000020498) #25	ENSLLEG00000020419	ENSLLEG00000020368	LEPR (ENSLLEG00000020168) #26	DNAJC6 (ENSLLEG00000019316) #28	ENSLLEG00000019202 #29	ENSLLEG00000019174	JAK1 (ENSLLEG00000018907) #30	RAVER2 (ENSLLEG00000018414) #31	ENSLLEG00000018275	CACHD1 (ENSLLEG00000017578) #33	UBE2U (ENSLLEG00000017423) #34
Coelacanth	MODERN SPECIES	689							GNG12 (ENSLACG00000000356)	GADD45A (ENSLACG00000003888) #12	SERBP1 (ENSLACG00000005639) #13	IL12RB2 (ENSLACG00000007034) #15	ENSLACG00000008559	ENSLACG00000009246 #17	SLC35D1 (ENSLACG00000010864) #19	MIER1 (ENSLACG00000011600) #20	DNAI4 (ENSLACG00000012131) #21	insl5a (ENSLACG00000012605) #22	DYNLT5 (ENSLACG00000012948) #23	SGIP1 (ENSLACG00000013174) #24	PDE4B (ENSLACG00000014460) #25	ENSLACG00000015586
Actinopterygii	ANCESTRAL SPECIES	8	ENSGT00940000154304.C	ENSGT00940000164081	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Neopterygii	ANCESTRAL SPECIES	8	ENSGT00940000154304.C	ENSGT00940000164081	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b	ENSGT00390000013340	ENSGT00520000055591.a #13	ENSGT00940000159829 #15	ENSGT00940000155665 #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301 #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000162256 #34	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00390000015466
Osteoglossocephalai	ANCESTRAL SPECIES	9	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00520000055591.a.a #13	ENSGT00940000159829.c.a #15	ENSGT00940000159829.d #15	ENSGT00940000155665.b #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000156209 #21	ENSGT00940000154396.b.b #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190 #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00390000006503.a #27	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.b	ENSGT00940000155542.a	ENSGT00390000015466
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	108		ENSGT00950000183036.a.a.g	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00390000017398	ENSGT00940000157892	ENSGT00940000155151.b.d	ENSGT00390000017201	ENSGT00940000163583	ENSGT00940000177205	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00390000015466	ENSGT00940000153733.B	ENSGT00940000161645.b
Otomorpha	ANCESTRAL SPECIES	281											ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00390000015466	ENSGT00940000153733.B	ENSGT00940000161645.b
Otophysi	ANCESTRAL SPECIES	32	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00390000015466	ENSGT00940000153733.B	ENSGT00940000161645.b
Cyprinoidei	ANCESTRAL SPECIES	2	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00960000186843	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00950000183297	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00390000015466	ENSGT00800000125311	ENSGT00940000153733.B	ENSGT00940000161645.b
Cyprininae	ANCESTRAL SPECIES	41	ENSGT00390000000263.i.a.a	ENSGT00950000183070.a.a.mb.b.h.b	ENSGT00980000198724	ENSGT00940000164867.b.t	ENSGT00940000159265.b	ENSGT00940000156968.m	ENSGT00940000156262.x	ENSGT00940000155212.ab.b.a.e	ENSGT00390000005717.t.c	ENSGT00940000164897.a.a.b	ENSGT00410000025556.a.b.a	ENSGT00530000063790.a.a.b	ENSGT00390000007658.a	ENSGT00390000010922.f	ENSGT00940000156209.q #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000156301.a.a.b #24	ENSGT00940000155190.bb.a.i #25	ENSGT00730000111209.o #26	ENSGT00940000158755.f #28	ENSGT00940000154568.db #29	ENSGT00940000157092.y.b #30	ENSGT00940000158648.f #31	ENSGT00940000157568.e #33	ENSGT00940000153947.B.l #36	ENSGT00940000155542.a.b	ENSGT00940000153733.B.g	ENSGT00940000161645.b.f	ENSGT00940000155661.y	ENSGT00940000156746.a.a	ENSGT00910000144243.m
Cyprininae_a	ANCESTRAL SPECIES	10	ENSGT00390000000263.i.a.a	ENSGT00950000183070.a.a.mb.b.h.b	ENSGT00980000198724	ENSGT00940000164867.b.t	ENSGT00940000159265.b	ENSGT00940000156968.m	ENSGT00940000156262.x	ENSGT00940000155212.ab.b.a.e	ENSGT00390000005717.t.c	ENSGT00940000164897.a.a.b	ENSGT00410000025556.a.b.a	ENSGT00530000063790.a.a.b	ENSGT00390000007658.a	ENSGT00390000010922.f	ENSGT00940000156209.q #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000156301.a.a.b #24	ENSGT00940000155190.bb.a.i #25	ENSGT00730000111209.o #26	ENSGT00940000158755.f #28	ENSGT00940000154568.db #29	ENSGT00940000157092.y.b #30	ENSGT00940000158648.f #31	ENSGT00940000157568.e #33	ENSGT00940000153947.B.l #36	ENSGT00940000155542.a.b	ENSGT00390000015466.b	ENSGT00940000153733.B.g	ENSGT00940000161645.b.f	ENSGT00530000063000.a.a.a.b	ENSGT00940000155661.y
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	137	phb2b (ENSSGRG00000013668)	ptmaa (ENSSGRG00000013737)	dlg1a (ENSSGRG00000013782)	MELTF (ENSSGRG00000017020)	lrrc40 (ENSSGRG00000017021)	ENSSGRG00000017023	SHROOM2 (ENSSGRG00000017024)	ENSSGRG00000017025	cldn33b (ENSSGRG00000017026)	wwc3 (ENSSGRG00000017027)	lurap1 (ENSSGRG00000017028)	TTC22 (ENSSGRG00000017029)	ttc4 (ENSSGRG00000017030)	pars2 (ENSSGRG00000017054)	ENSSGRG00000017055 #21	insl5a (ENSSGRG00000017056) #22	SGIP1 (ENSSGRG00000017057) #24	PDE4B (ENSSGRG00000017059) #25	lepr (ENSSGRG00000017923) #26	DNAJC6 (ENSSGRG00000017991) #28	ak4 (ENSSGRG00000017992) #29	jak1 (ENSSGRG00000018024) #30	ENSSGRG00000022753 #31	CACHD1 (ENSSGRG00000022754) #33	ROR1 (ENSSGRG00000022800) #36	pgm1 (ENSSGRG00000022805)	alg6 (ENSSGRG00000022972)	foxd3 (ENSSGRG00000022973)	ENSSGRG00000022975	atg4c (ENSSGRG00000022981)	DOCK7 (ENSSGRG00000023133)
Golden-line barbel	MODERN SPECIES	130	dlg1a (ENSSGRG00000015001)	MELTF (ENSSGRG00000014988)	lrrc40 (ENSSGRG00000014843)	ENSSGRG00000014842	ENSSGRG00000014837	ENSSGRG00000014832	ENSSGRG00000014830	cldn33b (ENSSGRG00000014829)	wwc3 (ENSSGRG00000014682)	lurap1 (ENSSGRG00000014681)	TTC22 (ENSSGRG00000014680)	ttc4 (ENSSGRG00000014675)	pars2 (ENSSGRG00000014679)	dnai4 (ENSSGRG00000014673) #21	ENSSGRG00000014672	insl5a (ENSSGRG00000014671) #22	SGIP1 (ENSSGRG00000014669) #24	ENSSGRG00000014668	PDE4B (ENSSGRG00000013773) #25	lepr (ENSSGRG00000013763) #26	DNAJC6 (ENSSGRG00000013417) #28	ak4 (ENSSGRG00000013416) #29
Common carp reference	MODERN SPECIES	16	phb2b (ENSCCRG00000037333)	ptmaa (ENSCCRG00000080418)	dlg1a (ENSCCRG00000037322)	ENSCCRG00000023992	ENSCCRG00000051679	lrrc40 (ENSCCRG00000068853)	SHROOM2 (ENSCCRG00000000133)	ENSCCRG00000069041	cldn33b (ENSCCRG00000053773)	wwc3 (ENSCCRG00000082360)	lurap1 (ENSCCRG00000022178)	ENSCCRG00000022180	ENSCCRG00000071260	pars2 (ENSCCRG00000060048)	dnai4 (ENSCCRG00000081904) #21	insl5a (ENSCCRG00000022189) #22	SGIP1 (ENSCCRG00000022192) #24	PDE4B (ENSCCRG00000022216) #25	lepr (ENSCCRG00000033711) #26	DNAJC6 (ENSCCRG00000033726) #28	jak1 (ENSCCRG00000033813) #30	ak4 (ENSCCRG00000071599) #29	RAVER2 (ENSCCRG00000045941) #31	CACHD1 (ENSCCRG00000017861) #33	ROR1 (ENSCCRG00000014885) #36	pgm1 (ENSCCRG00000073057)	efcab7 (ENSCCRG00000077091)	alg6 (ENSCCRG00000004859)	foxd3 (ENSCCRG00000042366)	atg4c (ENSCCRG00000065393)	DOCK7 (ENSCCRG00000003567)
Goldfish	MODERN SPECIES	24	ndufb5 (ENSCARG00000066950)	usp13 (ENSCARG00000066836)	PEX5L (ENSCARG00000066782)	pde6d (ENSCARG00000066742)	phb2b (ENSCARG00000066629)	ENSCARG00000066606	dlg1a (ENSCARG00000061653)	ENSCARG00000061347	LRRC7 (ENSCARG00000059223)	SHROOM2 (ENSCARG00000059073)	cldn33b (ENSCARG00000059055)	wwc3 (ENSCARG00000059019)	lurap1 (ENSCARG00000059010)	TTC22 (ENSCARG00000058991)	ENSCARG00000058958	insl5a (ENSCARG00000058937) #22	SGIP1 (ENSCARG00000058810) #24	ENSCARG00000058778	PDE4B (ENSCARG00000058317) #25	ENSCARG00000058288	lepr (ENSCARG00000057638) #26	DNAJC6 (ENSCARG00000057535) #28	ak4 (ENSCARG00000057519) #29	jak1 (ENSCARG00000051008) #30	RAVER2 (ENSCARG00000050820) #31	CACHD1 (ENSCARG00000050340) #33	ROR1 (ENSCARG00000050251) #36	efcab7 (ENSCARG00000049399)	foxd3 (ENSCARG00000049356)	angptl3 (ENSCARG00000049322)	DOCK7 (ENSCARG00000029753)
Zebrafish	MODERN SPECIES	21	phb2b (ENSDARG00000017728)	ptmaa (ENSDARG00000021113)	dlg1a (ENSDARG00000009677)	MELTF (ENSDARG00000075159)	lrrc40 (ENSDARG00000017708)	LRRC7 (ENSDARG00000079670)	ENSDARG00000076416	ENSDARG00000087805	cldn33b (ENSDARG00000015964)	wwc3 (ENSDARG00000061654)	lurap1 (ENSDARG00000115301)	TTC22 (ENSDARG00000077836)	ttc4 (ENSDARG00000044405)	pars2 (ENSDARG00000044404)	dnai4 (ENSDARG00000044400) #21	insl5a (ENSDARG00000070966) #22	SGIP1 (ENSDARG00000097897) #24	PDE4B (ENSDARG00000032868) #25	lepr (ENSDARG00000070961) #26	DNAJC6 (ENSDARG00000079891) #28	ak4 (ENSDARG00000006546) #29	jak1 (ENSDARG00000020625) #30	RAVER2 (ENSDARG00000075034) #31	CACHD1 (ENSDARG00000061590) #33	ROR1 (ENSDARG00000015176) #36	ENSDARG00000095914	pgm1 (ENSDARG00000013561)	efcab7 (ENSDARG00000020279)	itgb3bp (ENSDARG00000097493)	alg6 (ENSDARG00000017617)	foxd3 (ENSDARG00000021032)
Characiphysae	ANCESTRAL SPECIES	2	ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00800000125311	ENSGT00940000153733.B	ENSGT00940000161645.b
Characiphysae_b	ANCESTRAL SPECIES		ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00800000125311	ENSGT00940000153733.B	ENSGT00940000161645.b
Characoidei	ANCESTRAL SPECIES		ENSGT00950000183070.a.a.mb.b.h	ENSGT00980000198724	ENSGT00940000164867.b	ENSGT00940000159265	ENSGT00940000156968	ENSGT00940000156262	ENSGT00940000155212.ab.b.a	ENSGT00390000005717.t	ENSGT00940000164897.a.a	ENSGT00410000025556.a.b	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00800000125311	ENSGT00940000153733.B	ENSGT00940000161645.b
Red-bellied piranha	MODERN SPECIES	54	ENSPNAG00000026360	ptmaa (ENSPNAG00000026323)	dlg1a (ENSPNAG00000026060)	ENSPNAG00000025929	lrrc40 (ENSPNAG00000025844)	LRRC7 (ENSPNAG00000005806)	SHROOM2 (ENSPNAG00000025506)	ENSPNAG00000025474	cldn33b (ENSPNAG00000025451)	wwc3 (ENSPNAG00000025423)	lurap1 (ENSPNAG00000025167)	TTC22 (ENSPNAG00000025142)	ttc4 (ENSPNAG00000025124)	pars2 (ENSPNAG00000003869)	dnai4 (ENSPNAG00000025049) #21	insl5a (ENSPNAG00000025031) #22	SGIP1 (ENSPNAG00000025017) #24	lepr (ENSPNAG00000024985) #26	DNAJC6 (ENSPNAG00000024918) #28
Channel catfish	MODERN SPECIES	2	ENSIPUG00000008784	ptmaa (ENSIPUG00000008760)	dlg1a (ENSIPUG00000008544)	MFI2 (ENSIPUG00000008433)	lrrc40 (ENSIPUG00000008369)	LRRC7 (ENSIPUG00000008103)	shroom2 (ENSIPUG00000008031)	ENSIPUG00000008014	CLDN22 (ENSIPUG00000008005)	wwc3 (ENSIPUG00000007911)	lurap1 (ENSIPUG00000007889)	TTC22 (ENSIPUG00000007868)	Ttc4 (ENSIPUG00000007842)	pars2 (ENSIPUG00000007836)	wdr78 (ENSIPUG00000007816) #21	Rln3 (ENSIPUG00000007802) #22	ENSIPUG00000007788	SGIP1 (ENSIPUG00000007747) #24	pde4b (ENSIPUG00000007480) #25	lepr (ENSIPUG00000007420) #26	dnajc6 (ENSIPUG00000007320) #28	AK4 (ENSIPUG00000007289) #29	jak1 (ENSIPUG00000007138) #30	raver2 (ENSIPUG00000007082) #31	CACHD1 (ENSIPUG00000006905) #33	ROR1 (ENSIPUG00000006822) #36	PGM1 (ENSIPUG00000006772)	itgb3bp (ENSIPUG00000006746)	alg6 (ENSIPUG00000006720)	foxd3 (ENSIPUG00000006701)	ATG4C (ENSIPUG00000006632)
Euteleosteomorpha	ANCESTRAL SPECIES	70	ENSGT00950000183036.a.a.g	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00990000211775	ENSGT00390000017398	ENSGT00940000157892	ENSGT00940000155151.b.d	ENSGT00390000017201	ENSGT00940000163583	ENSGT00940000177205	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00390000015466	ENSGT00940000153733.B	ENSGT00940000161645.b
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Ballan wrasse	MODERN SPECIES	455			jak1 (ENSLBEG00000006464) #30	ak4 (ENSLBEG00000006419) #29	DNAJC6 (ENSLBEG00000006219) #28	lepr (ENSLBEG00000006119) #26	lurap1 (ENSLBEG00000006084)	TTC22 (ENSLBEG00000006059)	ENSLBEG00000006028	ENSLBEG00000006000	ENSLBEG00000005965	ENSLBEG00000005938	ENSLBEG00000005915	ttc4 (ENSLBEG00000005881)	pars2 (ENSLBEG00000005842)	insl5a (ENSLBEG00000005826) #22	SGIP1 (ENSLBEG00000005662) #24
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000155542.a	ENSGT00940000153947.B #36	ENSGT00940000157568 #33	ENSGT00940000158648.l #31	ENSGT00940000157092 #30	ENSGT00940000154568 #29	ENSGT00940000158755 #28	ENSGT00960000186686	ENSGT00730000111209 #26	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000154396.b.b.a #22	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00940000159865.j	ENSGT00440000033720.b	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000160489	ENSGT01050000244879.a.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000155542.a	ENSGT00940000153947.B #36	ENSGT00940000157568 #33	ENSGT00940000158648.l #31	ENSGT00940000157092 #30	ENSGT00940000154568 #29	ENSGT00940000158755 #28	ENSGT00960000186686	ENSGT00730000111209 #26	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000154396.b.b.a #22	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00940000159865.j	ENSGT00440000033720.b	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000160489	ENSGT01050000244879.a.a.a
Large yellow croaker	MODERN SPECIES	489	ROR1 (ENSLCRG00005006204) #36	CACHD1 (ENSLCRG00005005618) #33	RAVER2 (ENSLCRG00005005602) #31	jak1 (ENSLCRG00005005113) #30	ak4 (ENSLCRG00005005102) #29	ENSLCRG00005005101	DNAJC6 (ENSLCRG00005005100) #28	lepr (ENSLCRG00005002140) #26	lurap1 (ENSLCRG00005002102)	TTC22 (ENSLCRG00005002092)	ENSLCRG00005002076	ENSLCRG00005002043	ENSLCRG00005002037	ttc4 (ENSLCRG00005002021)	pars2 (ENSLCRG00005002011)	insl5a (ENSLCRG00005002006) #22	SGIP1 (ENSLCRG00005001965) #24	PDE4B (ENSLCRG00005000943) #25	ENSLCRG00005000911	anos1b (ENSLCRG00005000904)	ENSLCRG00005000892	ivns1abpa (ENSLCRG00005000863)	arpc5b (ENSLCRG00005020758)	ENSLCRG00005020756	pla2g4ab (ENSLCRG00005020242)	ptgs2b (ENSLCRG00005019646)	pdcb (ENSLCRG00005019636)	tprb (ENSLCRG00005019552)	prg4b (ENSLCRG00005019540)	ENSLCRG00005019531	rfx2 (ENSLCRG00005019466)
European seabass	MODERN SPECIES	17	alg6 (ENSDLAG00005024933)	efcab7 (ENSDLAG00005024938)	ROR1 (ENSDLAG00005024991) #36	CACHD1 (ENSDLAG00005025014) #33	RAVER2 (ENSDLAG00005025087) #31	jak1 (ENSDLAG00005025117) #30	ak4 (ENSDLAG00005025351) #29	DNAJC6 (ENSDLAG00005025352) #28	ENSDLAG00005025356	lepr (ENSDLAG00005025384) #26	lurap1 (ENSDLAG00005032468)	ENSDLAG00005025606	ENSDLAG00005027686	ENSDLAG00005025607	pars2 (ENSDLAG00005033834)	insl5a (ENSDLAG00005025637) #22	ENSDLAG00005025643 #24	ENSDLAG00005025650	PDE4B (ENSDLAG00005025655) #25	ENSDLAG00005025673	ENSDLAG00005025675	ENSDLAG00005025676	ivns1abpa (ENSDLAG00005025680)	HMCN1 (ENSDLAG00005028325)	arpc5b (ENSDLAG00005033907)	PLA2G4A (ENSDLAG00005025706)	ptgs2b (ENSDLAG00005025759)	pdcb (ENSDLAG00005025788)	tprb (ENSDLAG00005025812)	prg4b (ENSDLAG00005025912)	ENSDLAG00005025925
Gilthead seabream	MODERN SPECIES	2	pex11g (ENSSAUG00010010953)	APBA3 (ENSSAUG00010010954)	ABCA7 (ENSSAUG00010011007)	r3hdm4 (ENSSAUG00010011830)	ENSSAUG00010011839	ENSSAUG00010011840	ENSSAUG00010011842	ENSSAUG00010011843	ENSSAUG00010011856 #26	lurap1 (ENSSAUG00010012286)	TTC22 (ENSSAUG00010012288)	ENSSAUG00010012291	ENSSAUG00010012294	ttc4 (ENSSAUG00010012298)	pars2 (ENSSAUG00010012303)	insl5a (ENSSAUG00010012304) #22	SGIP1 (ENSSAUG00010012331) #24	PDE4B (ENSSAUG00010013697) #25	ENSSAUG00010013740	anos1b (ENSSAUG00010013743)	ENSSAUG00010013754	ivns1abpa (ENSSAUG00010013758)	HMCN1 (ENSSAUG00010013809)	arpc5b (ENSSAUG00010014121)	PLA2G4A (ENSSAUG00010014156)	ptgs2b (ENSSAUG00010014303)	pdcb (ENSSAUG00010014430)	tprb (ENSSAUG00010014516)	prg4b (ENSSAUG00010016066)	ENSSAUG00010016090	rfx2 (ENSSAUG00010016250)
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000155542.a	ENSGT00940000153947.B #36	ENSGT00940000157568 #33	ENSGT00940000158648 #31	ENSGT00940000157092 #30	ENSGT00940000154568 #29	ENSGT00960000186686	ENSGT00940000158755 #28	ENSGT00730000111209 #26	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00940000163701.b.a.a.a.b.c.b	ENSGT00940000163701.b.a.a.a.b.c.a	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000154396.b.b.a #22	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT00940000156309.A.l	ENSGT00440000033720.b	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000154614	ENSGT00940000160489	ENSGT01050000244879.a.a.a
Fugu	MODERN SPECIES	12	alg6 (ENSTRUG00000018524)	efcab7 (ENSTRUG00000018532)	ROR1 (ENSTRUG00000003110) #36	CACHD1 (ENSTRUG00000018536) #33	RAVER2 (ENSTRUG00000018541) #31	jak1 (ENSTRUG00000018544) #30	ak4 (ENSTRUG00000023333) #29	ENSTRUG00000022954	DNAJC6 (ENSTRUG00000018550) #28	lepr (ENSTRUG00000018553) #26	lurap1 (ENSTRUG00000026447)	TTC22 (ENSTRUG00000018557)	ENSTRUG00000025886	ENSTRUG00000025652	pars2 (ENSTRUG00000018560)	insl5a (ENSTRUG00000032631) #22	SGIP1 (ENSTRUG00000018561) #24	PDE4B (ENSTRUG00000018562) #25	ENSTRUG00000006795	anos1b (ENSTRUG00000006504)	ivns1abpa (ENSTRUG00000006013)	ENSTRUG00000006420	ARPC5 (ENSTRUG00000032458)	PLA2G4A (ENSTRUG00000004829)	ptgs2b (ENSTRUG00000004240)	pdcb (ENSTRUG00000004109)	tprb (ENSTRUG00000002419)	prg4b (ENSTRUG00000002244)	FCHO1 (ENSTRUG00000009109)	rfx2 (ENSTRUG00000008788)	acsbg2 (ENSTRUG00000008229)
Tetraodon	MODERN SPECIES		alg6 (ENSTNIG00000018101)	ENSTNIG00000018102	efcab7 (ENSTNIG00000018103)	pgm1 (ENSTNIG00000018104)	ROR1 (ENSTNIG00000018105) #36	RAVER2 (ENSTNIG00000018106) #31	jak1 (ENSTNIG00000018107) #30	ak4 (ENSTNIG00000018108) #29	DNAJC6 (ENSTNIG00000018109) #28	lepr (ENSTNIG00000001810) #26	lurap1 (ENSTNIG00000018110)	TTC22 (ENSTNIG00000018111)	ENSTNIG00000000173	ttc4 (ENSTNIG00000018112)	pars2 (ENSTNIG00000018113)	insl5a (ENSTNIG00000000230) #22	SGIP1 (ENSTNIG00000018114) #24	PDE4B (ENSTNIG00000018115) #25	ENSTNIG00000018116	anos1b (ENSTNIG00000018117)	ENSTNIG00000018118	ivns1abpa (ENSTNIG00000018119)	ENSTNIG00000018120	prg4b (ENSTNIG00000018121)	tprb (ENSTNIG00000018122)	pdcb (ENSTNIG00000018123)	ptgs2b (ENSTNIG00000018124)	PLA2G4A (ENSTNIG00000018125)	arpc5b (ENSTNIG00000018126)	FCHO1 (ENSTNIG00000018127)	rfx2 (ENSTNIG00000018128)
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.a #22
Sailfin molly	MODERN SPECIES	1777									ENSPLAG00000022769	ENSPLAG00000022751	ENSPLAG00000022697	ENSPLAG00000022655	ENSPLAG00000022621	ttc4 (ENSPLAG00000022595)	pars2 (ENSPLAG00000022589)	insl5a (ENSPLAG00000022579) #22	SGIP1 (ENSPLAG00000022558) #24
Protacanthopterygii	ANCESTRAL SPECIES	30	ENSGT00940000154667.b.a	ENSGT00950000183036.a.a.g	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00990000211775	ENSGT00390000017398	ENSGT00940000157892	ENSGT00940000155151.b.d	ENSGT00390000017201	ENSGT00940000163583	ENSGT00530000063790.a.a	ENSGT00390000007658	ENSGT00510000049371	ENSGT00390000010922	ENSGT00940000156209 #21	ENSGT00940000154396.b.b.a #22	ENSGT00940000174981	ENSGT00940000156301.a.a #24	ENSGT00940000155190.bb.a #25	ENSGT01060000248530.C.d	ENSGT00390000018600	ENSGT00730000111209 #26	ENSGT00940000158755 #28	ENSGT00940000154568 #29	ENSGT00940000157092 #30	ENSGT00940000158648 #31	ENSGT00940000157568 #33	ENSGT00940000153947.B #36	ENSGT00940000155542.a	ENSGT00390000015466	ENSGT00940000153733.B
Northern pike	MODERN SPECIES	7	stxbp3 (ENSELUG00000023333)	ENSELUG00000023255	MCOLN3 (ENSELUG00000023196)	DNAI3 (ENSELUG00000023142)	SYDE2 (ENSELUG00000023134)	zgc:65873 (ENSELUG00000023125)	DDAH1 (ENSELUG00000023108)	ccn1 (ENSELUG00000023051)	ZNHIT6 (ENSELUG00000023035)	ENSELUG00000022977	ENSELUG00000031759	lurap1 (ENSELUG00000022952)	TTC22 (ENSELUG00000022941)	ttc4 (ENSELUG00000022921)	dnai4 (ENSELUG00000022844) #21	insl5a (ENSELUG00000022758) #22	SGIP1 (ENSELUG00000022736) #24	PDE4B (ENSELUG00000022680) #25	ENSELUG00000025775	lepr (ENSELUG00000022567) #26	DNAJC6 (ENSELUG00000022502) #28	ak4 (ENSELUG00000022480) #29	jak1 (ENSELUG00000022457) #30	RAVER2 (ENSELUG00000022384) #31	CACHD1 (ENSELUG00000022312) #33	ROR1 (ENSELUG00000022236) #36	efcab7 (ENSELUG00000001058)	alg6 (ENSELUG00000022163)	foxd3 (ENSELUG00000022126)	ENSELUG00000022104	atg4c (ENSELUG00000022092)
Clupeocephala	ANCESTRAL SPECIES	159	ENSGT00390000006200	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340	ENSGT00520000055591.a.b #13	ENSGT00940000155776.a	ENSGT00940000159829.d #15	ENSGT00940000155665.a #19	ENSGT00940000155665.b #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000162256 #34	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00940000161912
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.b #22
Otophysi	ANCESTRAL SPECIES	101	ENSGT00950000182903.a.a.d	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00940000166991	ENSGT00960000186677	ENSGT00940000154811.B.a.b	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.a	ENSGT00390000018059.b.b	ENSGT00940000163540	ENSGT00940000156311.b.b	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00390000014984	ENSGT00620000088018	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b	ENSGT00940000154327.a
Cyprinoidei	ANCESTRAL SPECIES	61	ENSGT00950000182903.a.a.d	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00940000166991	ENSGT00960000186677	ENSGT00940000154811.B.a.b	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.a	ENSGT00390000018059.b.b	ENSGT00940000163540	ENSGT00940000156311.b.b	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00390000014984	ENSGT00620000088018	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b	ENSGT00940000154327.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	66	ENSGT00940000173998.b	ENSGT00950000182930.C.e.d	ENSGT00950000182903.a.a.d.g	ENSGT00940000157384.a.g	ENSGT00940000166991.f	ENSGT00940000154811.B.a.b.f	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g.a.a	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.a.d	ENSGT00390000018059.b.b.a	ENSGT00940000163540.g	ENSGT00940000156311.b.b.b	ENSGT00940000154396.b.b.b.a #22
Goldfish	MODERN SPECIES	11	ENSCARG00000018055	camk2n1a (ENSCARG00000018068)	mul1a (ENSCARG00000018076)	ENSCARG00000047083	mier1b (ENSCARG00000047087) #20	ENSCARG00000047098	ENSCARG00000047100	ENSCARG00000047104	ENSCARG00000047106	sec22ba (ENSCARG00000047129)	imp3 (ENSCARG00000047140)	slc35a3b (ENSCARG00000047163)	FAM78B (ENSCARG00000047175)	CMPK1 (ENSCARG00000047179)	bcl6ab (ENSCARG00000047184)	insl5b (ENSCARG00000047196) #22	dynlt5 (ENSCARG00000047213) #23	SGIP1 (ENSCARG00000047237) #24	PDE4B (ENSCARG00000047436) #25	ENSCARG00000051725	ENSCARG00000051745	LEPROT (ENSCARG00000051754) #27	JAK1 (ENSCARG00000051834) #30	PGM1 (ENSCARG00000052861)	ENSCARG00000053213	LRP8 (ENSCARG00000053240)	ENSCARG00000053360	ENSCARG00000053366	ENSCARG00000053370	tex261 (ENSCARG00000053380)	ENSCARG00000053415
Cyprininae_a	ANCESTRAL SPECIES	98	ENSGT00950000182930.C.e.d	ENSGT00950000182903.a.a.d.g	ENSGT00940000157384.a.g	ENSGT00940000159223.d.d	ENSGT00940000166991.f	ENSGT00940000154811.B.a.b.f	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g.a.a	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.a.d	ENSGT00390000018059.b.b.a	ENSGT00940000163540.g	ENSGT00940000156311.b.b.b	ENSGT00940000154396.b.b.b.a #22	ENSGT00940000156301.a.b.b #24	ENSGT00940000155190.bb.b.a #25	ENSGT00390000006503.a.u #27	ENSGT00940000157092.z.b #30	ENSGT00940000155542.b.l	ENSGT00940000156746.b.c	ENSGT00940000158468.a.a.d	ENSGT00940000154819.a.a.b.d	ENSGT00990000204738.b
Common carp reference	MODERN SPECIES	21	ENSCCRG00000077614	ENSCCRG00000050634	dvl3a (ENSCCRG00000065423)	pcyt1aa (ENSCCRG00000050680)	ap2m1a (ENSCCRG00000050685)	anxa13l (ENSCCRG00000001295)	abi1b (ENSCCRG00000062063)	tsen15 (ENSCCRG00000003761)	ENSCCRG00000082225	sec22ba (ENSCCRG00000003713)	imp3 (ENSCCRG00000060439)	slc35a3b (ENSCCRG00000017455)	ENSCCRG00000028949	cmpk (ENSCCRG00000017448)	bcl6ab (ENSCCRG00000003393)	insl5b (ENSCCRG00000061274) #22	dynlt5 (ENSCCRG00000003376) #23	SGIP1 (ENSCCRG00000038434) #24	PDE4B (ENSCCRG00000025507) #25	LEPROT (ENSCCRG00000003902) #27	ENSCCRG00000045196 #30	ENSCCRG00000013103	ENSCCRG00000056615	ENSCCRG00000082520	ENSCCRG00000080626	ENSCCRG00000076849	ENSCCRG00000056163	ENSCCRG00000047080	ENSCCRG00000010870	ENSCCRG00000047085	slc1a7a (ENSCCRG00000024582)
Golden-line barbel	MODERN SPECIES	175	ENSSGRG00000053459	ENSSGRG00000053460	ZBTB41 (ENSSGRG00000053462)	dvl3a (ENSSGRG00000053463)	pcyt1aa (ENSSGRG00000053466)	ap2m1a (ENSSGRG00000053486)	abi1b (ENSSGRG00000053540)	tsen15 (ENSSGRG00000053547)	zgc:55943 (ENSSGRG00000053548)	sec22ba (ENSSGRG00000053550)	imp3 (ENSSGRG00000053552)	slc35a3b (ENSSGRG00000053566)	FAM78B (ENSSGRG00000053568)	cmpk (ENSSGRG00000053569)	bcl6ab (ENSSGRG00000053570)	insl5b (ENSSGRG00000053571) #22	dynlt5 (ENSSGRG00000053572) #23	ENSSGRG00000053573 #24	PDE4B (ENSSGRG00000053585) #25	LEPROT (ENSSGRG00000053714) #27	JAK1 (ENSSGRG00000053731) #30	PGM1 (ENSSGRG00000053907)	ENSSGRG00000053981	ENSSGRG00000053983	ENSSGRG00000053984	ENSSGRG00000053985	ebna1bp2 (ENSSGRG00000053986)	CFAP57 (ENSSGRG00000053989)	tmem125b (ENSSGRG00000053992)	slc1a7a (ENSSGRG00000053999)	scp2a (ENSSGRG00000054015)
Cyprininae	ANCESTRAL SPECIES	118												ENSGT00950000182827.C.a.c	ENSGT00390000018059.b.b.b	ENSGT00940000163540.h	ENSGT00940000156311.b.b.a	ENSGT00940000154396.b.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b.b #24	ENSGT00940000155190.bb.b.a #25	ENSGT00390000006503.a.u #27	ENSGT00940000157092.z.b #30	ENSGT00940000155542.b.l	ENSGT00940000156746.b	ENSGT00940000158468.a.a.d	ENSGT00940000154819.a.a.b.d	ENSGT00990000204738.b	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b.f	ENSGT00390000001523.r	ENSGT01020000230412.A.c.b.c.b.a.b	ENSGT00940000154277.a.e
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154396.b.b.b.b #22
Golden-line barbel	MODERN SPECIES	680	ENSSGRG00000033992	ahsg2 (ENSSGRG00000033990)	ENSSGRG00000033987	ENSSGRG00000033985	dvl3a (ENSSGRG00000033332)	pcyt1aa (ENSSGRG00000033313)	ap2m1a (ENSSGRG00000033250)	anxa13l (ENSSGRG00000033096)	abi1b (ENSSGRG00000032874)	zgc:55943 (ENSSGRG00000032871)	sec22ba (ENSSGRG00000032866)	slc35a3b (ENSSGRG00000032865)	FAM78B (ENSSGRG00000032864)	cmpk (ENSSGRG00000032863)	ENSSGRG00000032862	insl5b (ENSSGRG00000032860) #22	ENSSGRG00000032859	SGIP1 (ENSSGRG00000032842) #24	PDE4B (ENSSGRG00000032092) #25	LEPROT (ENSSGRG00000032086) #27	JAK1 (ENSSGRG00000030767) #30	PGM1 (ENSSGRG00000030598)	ENSSGRG00000030583	ENSSGRG00000030582	LRP8 (ENSSGRG00000030576)	ENSSGRG00000030569	ENSSGRG00000030566	SLC1A7 (ENSSGRG00000030565)	ENSSGRG00000030564	ENSSGRG00000030563
Goldfish	MODERN SPECIES	19	NMUR1 (ENSCARG00000009833)	ENSCARG00000009826	ahsg2 (ENSCARG00000009813)	PFN2 (ENSCARG00000009804)	dvl3a (ENSCARG00000009773)	pcyt1aa (ENSCARG00000009743)	ap2m1a (ENSCARG00000009725)	anxa13l (ENSCARG00000009702)	abi1b (ENSCARG00000009653)	tsen15 (ENSCARG00000009634)	zgc:55943 (ENSCARG00000009622)	slc35a3b (ENSCARG00000009610)	FAM78B (ENSCARG00000009594)	cmpk (ENSCARG00000009584)	bcl6ab (ENSCARG00000009566)	insl5b (ENSCARG00000009558) #22	ENSCARG00000009551	ENSCARG00000009546	SGIP1 (ENSCARG00000009508) #24	PDE4B (ENSCARG00000007469) #25	ENSCARG00000007373	LEPROT (ENSCARG00000007364) #27	JAK1 (ENSCARG00000005027) #30	ENSCARG00000004902	ANGPTL3 (ENSCARG00000004892)	ENSCARG00000004878	LRP8 (ENSCARG00000004835)	ENSCARG00000004824	ebna1bp2 (ENSCARG00000004817)	CFAP57 (ENSCARG00000004382)	tmem125b (ENSCARG00000004339)
Zebrafish	MODERN SPECIES	11	pcyt1aa (ENSDARG00000011233)	ap2m1a (ENSDARG00000002790)	anxa13l (ENSDARG00000013613)	ENSDARG00000097535	abi1b (ENSDARG00000062991)	ENSDARG00000058410	tsen15 (ENSDARG00000069280)	zgc:55943 (ENSDARG00000029292)	ENSDARG00000111651	sec22ba (ENSDARG00000030108)	imp3 (ENSDARG00000115266)	slc35a3b (ENSDARG00000020981)	FAM78B (ENSDARG00000063018)	cmpk (ENSDARG00000019924)	bcl6ab (ENSDARG00000069295)	insl5b (ENSDARG00000069294) #22	ahsg2 (ENSDARG00000069293)	pfn2a (ENSDARG00000012682)	nsun4 (ENSDARG00000021324)	dmbx1a (ENSDARG00000009922)	gadd45aa (ENSDARG00000043581) #12	gng12a (ENSDARG00000003375)	wls (ENSDARG00000009534) #9	scinlb (ENSDARG00000058348)	ccdc18 (ENSDARG00000078822)	ENSDARG00000098557	mtf2 (ENSDARG00000005590)	dipk1aa (ENSDARG00000062955)	rpl5a (ENSDARG00000020197)	ENSDARG00000077666	gfi1aa (ENSDARG00000020746)
Characiphysae	ANCESTRAL SPECIES	35	ENSGT00950000182903.a.a.d	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00940000166991	ENSGT00960000186677	ENSGT00940000154811.B.a.b	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.a	ENSGT00390000018059.b.b	ENSGT00940000163540	ENSGT00940000156311.b.b	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00940000161912	ENSGT00990000204738	ENSGT00390000014984	ENSGT00620000088018	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b
Characiphysae_b	ANCESTRAL SPECIES	33	ENSGT00950000182903.a.a.d	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00940000166991	ENSGT00960000186677	ENSGT00940000154811.B.a.b	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00940000156349.d	ENSGT00550000075090	ENSGT00950000182827.C.a	ENSGT00390000018059.b.b	ENSGT00940000163540	ENSGT00940000156311.b.b	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00390000014984	ENSGT00620000088018	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b	ENSGT00940000154327.a
Characoidei	ANCESTRAL SPECIES	20	ENSGT00940000155918.c.b	ENSGT00950000182903.a.a.d	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00940000166991	ENSGT00960000186677	ENSGT00940000154811.B.a.b	ENSGT00940000156350.g	ENSGT00390000014781	ENSGT00940000164993.g	ENSGT00550000075090	ENSGT00950000182827.C.a	ENSGT00390000018059.b.b	ENSGT00940000163540	ENSGT00940000156311.b.b	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00390000014984	ENSGT00620000088018	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b	ENSGT00940000154327.a
Red-bellied piranha	MODERN SPECIES	91	GPR158 (ENSPNAG00000016692)	dvl3a (ENSPNAG00000016757)	pcyt1aa (ENSPNAG00000003446)	ap2m1a (ENSPNAG00000006812)	anxa13l (ENSPNAG00000016925)	ENSPNAG00000016940	abi1b (ENSPNAG00000005183)	ENSPNAG00000017047	tsen15 (ENSPNAG00000017061)	ENSPNAG00000017087	imp3 (ENSPNAG00000017113)	slc35a3b (ENSPNAG00000017158)	FAM78B (ENSPNAG00000017171)	cmpk (ENSPNAG00000017200)	bcl6ab (ENSPNAG00000017299)	insl5b (ENSPNAG00000017317) #22	dynlt5 (ENSPNAG00000017335) #23	SGIP1 (ENSPNAG00000017405) #24	PDE4B (ENSPNAG00000017476) #25	LEPROT (ENSPNAG00000017500) #27	JAK1 (ENSPNAG00000017528) #30	PGM1 (ENSPNAG00000003486)	ENSPNAG00000003487	ENSPNAG00000017613	LRP8 (ENSPNAG00000017633)	ENSPNAG00000017646	ebna1bp2 (ENSPNAG00000017674)	CFAP57 (ENSPNAG00000017746)	tmem125b (ENSPNAG00000003492)	ENSPNAG00000017794	SHISAL2A (ENSPNAG00000003496)
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #13	ENSGT00940000155665.b #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000162256 #34	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00620000088018	ENSGT00390000003015.d	ENSGT00940000161304.a.b	ENSGT00940000156073.c.a.b	ENSGT00940000154327.a
Protacanthopterygii	ANCESTRAL SPECIES	38	ENSGT00940000155117.f.b	ENSGT00390000001114	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00510000046975.a	ENSGT00940000154842.a.b.f	ENSGT00390000013340.c	ENSGT00520000055591.a.b #13	ENSGT00940000155665.b #19	ENSGT01030000234573.A.b.a #20	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190.bb.b #25	ENSGT00390000006503.a #27	ENSGT00940000162256 #34	ENSGT00940000155542.b	ENSGT00940000156746.b	ENSGT00940000158468.a.a	ENSGT00940000154819.a.a.b	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT00390000003015.d	ENSGT01000000216646	ENSGT00390000002757	ENSGT00940000160075
Salmoninae	ANCESTRAL SPECIES	610													ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #13	ENSGT01030000234573.A.b.a.f #20	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b.d #24	ENSGT00940000156301.a.a.d #24	ENSGT00940000155190.bb.b.d #25	ENSGT00390000006503.a.w #27	ENSGT00940000157092.v.b.a #30	ENSGT00940000162256 #34	ENSGT00940000155542.b.j.b	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000158746.k.a	ENSGT00940000155117.f.b.f	ENSGT00390000001114.j	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298.d	ENSGT00940000165058.b.d	ENSGT00940000164081.a.f	ENSGT00940000157380.d	ENSGT00510000046975.a.c	ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #13	ENSGT01030000234573.A.b.a.f #20	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b.d #24	ENSGT00940000155190.bb.b.d #25	ENSGT00390000006503.a.w #27	ENSGT00940000157092.v.b.a #30	ENSGT00940000162256 #34	ENSGT00940000155542.b.j.b	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT01000000216646.b	ENSGT00940000161304.a.b.b.b	ENSGT00950000182977.B.b.a.c.b
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000158746.k.a	ENSGT00390000001114.j	ENSGT00940000155117.f.b.f	ENSGT00390000006200	ENSGT00940000157937.a	ENSGT00940000158520.e.a.a	ENSGT00940000157316.e.a.d	ENSGT00940000166298.d	ENSGT00940000165058.b.d	ENSGT00940000164081.a.f	ENSGT00940000157380.d	ENSGT00510000046975.a.c	ENSGT00390000013340.c.c	ENSGT00520000055591.a.b.e #13	ENSGT01030000234573.A.b.a.f #20	ENSGT00940000154396.b.b.b #22	ENSGT00940000160185 #23	ENSGT00940000157105.c	ENSGT00940000156301.a.a.d #24	ENSGT00940000155190.bb.b.d #25	ENSGT00390000006503.a.w #27	ENSGT00940000157092.v.b.a #30	ENSGT00940000162256 #34	ENSGT00940000155542.b.j.b	ENSGT00940000156746.b.b	ENSGT00940000158468.a.a.e	ENSGT00940000154819.a.a.b.f	ENSGT00990000204738	ENSGT00620000088018.u	ENSGT01000000216646.b	ENSGT00940000161304.a.b.b.b
River trout	MODERN SPECIES	24	ENSSTUG00000038538	ENSSTUG00000038602	cdc73 (ENSSTUG00000040157)	ENSSTUG00000040769	ro60 (ENSSTUG00000040774)	RGS2 (ENSSTUG00000040790)	rgs13 (ENSSTUG00000040807)	RGS1 (ENSSTUG00000040832)	rgs18 (ENSSTUG00000040873)	ENSSTUG00000040891	rgs5b (ENSSTUG00000040917)	RGS5 (ENSSTUG00000040945)	ENSSTUG00000040988	ENSSTUG00000040999 #13	mier1b (ENSSTUG00000041021) #20	insl5b (ENSSTUG00000041253) #22	dynlt5 (ENSSTUG00000041268) #23	ENSSTUG00000041291	PDE4B (ENSSTUG00000041543) #25	LEPROT (ENSSTUG00000043920) #27	JAK1 (ENSSTUG00000043980) #30	ENSSTUG00000045334 #34	ENSSTUG00000045340	ANGPTL3 (ENSSTUG00000045350)	ENSSTUG00000003317	LRP8 (ENSSTUG00000005280)	ENSSTUG00000005416	CFAP57 (ENSSTUG00000005442)	ENSSTUG00000005550	SHISAL2A (ENSSTUG00000005559)	ENSSTUG00000005594
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000050207	ENSSSAG00000099644	ENSSSAG00000115579	kcnt2 (ENSSSAG00000048768)	trove2 (ENSSSAG00000048653)	ENSSSAG00000086998	RGS2 (ENSSSAG00000048638)	ENSSSAG00000098668	ENSSSAG00000048591	rgs5b (ENSSSAG00000048583)	RGS5 (ENSSSAG00000048532)	rgs18 (ENSSSAG00000048618)	ENSSSAG00000048525	ENSSSAG00000048503	ENSSSAG00000048488 #13	ENSSSAG00000099417 #22	ENSSSAG00000048473 #20	SGIP1 (ENSSSAG00000048430) #24	PDE4B (ENSSSAG00000045031) #25	LEPROT (ENSSSAG00000083964) #27	ENSSSAG00000005686 #30	ENSSSAG00000005273 #34	ENSSSAG00000081771	ENSSSAG00000005265	ENSSSAG00000005245	ENSSSAG00000005192	ENSSSAG00000113012	ENSSSAG00000005180	ENSSSAG00000005062	ENSSSAG00000005028	ENSSSAG00000116616
Huchen	MODERN SPECIES	1998														ENSHHUG00000014504 #13	mier1b (ENSHHUG00000014473) #20	insl5b (ENSHHUG00000014470) #22	dynlt5 (ENSHHUG00000014465) #23	SGIP1 (ENSHHUG00000014461) #24	fbxl7 (ENSHHUG00000014417)	impa1 (ENSHHUG00000014396)
Osteoglossiformes	ANCESTRAL SPECIES	51	ENSGT00940000157937.b	ENSGT00940000158520.e.a	ENSGT00940000157316	ENSGT00940000166298	ENSGT00940000165058.b	ENSGT00940000164081.a	ENSGT00940000157380	ENSGT00940000159036.b	ENSGT00940000153464.A.b.t	ENSGT00940000154842.a.b.f	ENSGT00390000013340	ENSGT00520000055591.a.b #13	ENSGT00940000159829.c.b #15	ENSGT00940000155665.a #19	ENSGT01030000234573.A.b.a.a #20	ENSGT00940000154396.b.b #22	ENSGT00940000160185 #23	ENSGT00940000156301.a.b #24	ENSGT00940000155190 #25	ENSGT00730000111209.k #26	ENSGT00940000158755.b #28	ENSGT00940000157092.r #30	ENSGT00940000158648.d #31	ENSGT00940000157568.d #33	ENSGT00940000153947.B.b #36	ENSGT00940000155542.b
Asian bonytongue	MODERN SPECIES	18	rgs13 (ENSSFOG00015012027)	RGS1 (ENSSFOG00015012047)	rgs18 (ENSSFOG00015012080)	ENSSFOG00015012096	rgs5b (ENSSFOG00015012140)	rgs5a (ENSSFOG00015025128)	rgs4 (ENSSFOG00015012181)	ENSSFOG00015012194	UAP1 (ENSSFOG00015012249)	DDR2 (ENSSFOG00015012278)	hsd17b7 (ENSSFOG00015012348)	SERBP1 (ENSSFOG00015026486) #13	ENSSFOG00015012402 #15	slc35d1a (ENSSFOG00015012432) #19	mier1a (ENSSFOG00015012453) #20	insl5b (ENSSFOG00015012465) #22	dynlt5 (ENSSFOG00015012485) #23	SGIP1 (ENSSFOG00015012521) #24	PDE4B (ENSSFOG00015012694) #25	LEPR (ENSSFOG00015012782) #26	ENSSFOG00015012808	LEPROT (ENSSFOG00015025521) #27	DNAJC6 (ENSSFOG00015012857) #28	jak1 (ENSSFOG00015012910) #30	RAVER2 (ENSSFOG00015013015) #31	CACHD1 (ENSSFOG00015013065) #33	ROR1 (ENSSFOG00015013171) #36	PGM1 (ENSSFOG00015013197)	ENSSFOG00015013235	ENSSFOG00015013250	ENSSFOG00015033095
Spotted gar	MODERN SPECIES	648	rgs5b (ENSLOCG00000007246)	rgs5a (ENSLOCG00000007218)	rgs4 (ENSLOCG00000007206)	H4C7 (ENSLOCG00000017741)	ENSLOCG00000007192	uhmk1 (ENSLOCG00000007180)	uap1 (ENSLOCG00000007170)	DDR2 (ENSLOCG00000007142)	hsd17b7 (ENSLOCG00000007122)	serbp1a (ENSLOCG00000007107) #13	ENSLOCG00000007083 #15	ENSLOCG00000007069 #15	slc35d1b (ENSLOCG00000007054) #19	mier1a (ENSLOCG00000007038) #20	dnai4 (ENSLOCG00000007005) #21	insl5a (ENSLOCG00000006990) #22	dynlt5 (ENSLOCG00000006973) #23	SGIP1 (ENSLOCG00000006955) #24	PDE4B (ENSLOCG00000006922) #25	lepr (ENSLOCG00000006903) #26	LEPROT (ENSLOCG00000006886) #27	DNAJC6 (ENSLOCG00000006853) #28	ak4 (ENSLOCG00000006837) #29	jak1 (ENSLOCG00000006806) #30	RAVER2 (ENSLOCG00000006773) #31	CACHD1 (ENSLOCG00000006750) #33	UBE2U (ENSLOCG00000006744) #34	ROR1 (ENSLOCG00000006711) #36	PGM1 (ENSLOCG00000006665)	alg6 (ENSLOCG00000006645)	foxd3 (ENSLOCG00000017740)
Reedfish	MODERN SPECIES	1	rgs5a (ENSECRG00000011534)	rgs4 (ENSECRG00000011519)	rpl27 (ENSECRG00000011509)	ENSECRG00000011494	ENSECRG00000011482	ENSECRG00000011471	uhmk1 (ENSECRG00000011461)	uap1 (ENSECRG00000011438)	ENSECRG00000011414	hsd17b7 (ENSECRG00000011393)	serbp1a (ENSECRG00000011358) #13	IL12RB2 (ENSECRG00000011310) #15	slc35d1b (ENSECRG00000009488) #19	mier1b (ENSECRG00000009470) #20	dnai4 (ENSECRG00000009439) #21	insl5a (ENSECRG00000009426) #22	dynlt5 (ENSECRG00000009416) #23	SGIP1 (ENSECRG00000009386) #24	PDE4B (ENSECRG00000009352) #25	lepr (ENSECRG00000009304) #26	LEPROT (ENSECRG00000009275) #27	DNAJC6 (ENSECRG00000009249) #28	ak4 (ENSECRG00000009230) #29	jak1 (ENSECRG00000009148) #30	RAVER2 (ENSECRG00000009085) #31	CACHD1 (ENSECRG00000009038) #33	UBE2U (ENSECRG00000009018) #34	ROR1 (ENSECRG00000008992) #36	PGM1 (ENSECRG00000008950)	efcab7 (ENSECRG00000008920)	alg6 (ENSECRG00000008901)
Euteleostomi	ANCESTRAL SPECIES	94								ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000153846.a.b	ENSGT00940000156166.b	ENSGT00530000063861.a	ENSGT00940000158914	ENSGT00940000165798	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000009916	ENSGT00940000159979
Actinopterygii	ANCESTRAL SPECIES	151								ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000165798	ENSGT00940000154912	ENSGT00940000159311.d.a.a	ENSGT00940000153846.a.b
Neopterygii	ANCESTRAL SPECIES	122										ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000159428	ENSGT00940000156051	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00940000159016	ENSGT00390000002121	ENSGT00940000165172	ENSGT00940000154912	ENSGT00940000159311.d.a.a	ENSGT00940000153846.a.b
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	9	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000155764.A.b	ENSGT00940000158445.e	ENSGT01060000248544.a.a.b.a.a.e	ENSGT00740000117176	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000158520.f	ENSGT00940000156099	ENSGT00940000165058.a	ENSGT00950000183022.a.a.b.b	ENSGT00940000154304.C	ENSGT00940000164081.b	ENSGT00940000157380	ENSGT00940000159036	ENSGT00510000046975.b	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000153464.A.b	ENSGT00940000154842.a.b.e	ENSGT00520000055591.a.a #13
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	293					ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.b	ENSGT00390000010157.b.l	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a.a ##22	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00990000206722
Asian bonytongue	MODERN SPECIES	11	ticam1 (ENSSFOG00015018422)	ENSSFOG00015018446	dohh (ENSSFOG00015018452)	ENSSFOG00015018470	ENSSFOG00015024674	carm1 (ENSSFOG00015018537)	ENSSFOG00015018583	CC2D1A (ENSSFOG00015018607)	mri1 (ENSSFOG00015028669)	zgc:136864 (ENSSFOG00015018661)	ENSSFOG00015018666	ENSSFOG00015018689	khsrp (ENSSFOG00015018719)	DCAF15 (ENSSFOG00015018822)	RFX1 (ENSSFOG00015018885)	rln3a (ENSSFOG00015018918) ##22	TNPO2 (ENSSFOG00015018955)	ENSSFOG00015019040	NTHL1 (ENSSFOG00015019054)	TSC2 (ENSSFOG00015019126)	ENSSFOG00015019494	ENSSFOG00015019623	tekt4 (ENSSFOG00015019634)	ENSSFOG00015033018	snx21 (ENSSFOG00015025990)	srsf6a (ENSSFOG00015019681)	L3MBTL1 (ENSSFOG00015019701)	sgk2a (ENSSFOG00015019734)	ENSSFOG00015019760	ENSSFOG00015019810	ENSSFOG00015019933
P. kingsleyae	MODERN SPECIES	362	carm1 (ENSPKIG00000003610)	YIPF2 (ENSPKIG00000003554)	TMEM150C (ENSPKIG00000003524)	ENSPKIG00000003492	ENSPKIG00000003474	CC2D1A (ENSPKIG00000003419)	mri1 (ENSPKIG00000003387)	zgc:136864 (ENSPKIG00000003368)	ENSPKIG00000003352	ENSPKIG00000003325	ENSPKIG00000003290	ENSPKIG00000003254	khsrp (ENSPKIG00000003200)	DCAF15 (ENSPKIG00000003156)	rfx1a (ENSPKIG00000003056)	rln3a (ENSPKIG00000003018) ##22	TNPO2 (ENSPKIG00000002899)	ENSPKIG00000002848	NHERF2 (ENSPKIG00000002804)	NTHL1 (ENSPKIG00000002768)	TSC2 (ENSPKIG00000002534)	ENSPKIG00000002348	ENSPKIG00000002314	ENSPKIG00000002285	tekt4 (ENSPKIG00000002264)	ENSPKIG00000002238	ENSPKIG00000002220	ENSPKIG00000002189	ENSPKIG00000002168	ENSPKIG00000002144
Osteoglossiformes	ANCESTRAL SPECIES	102								ENSGT00940000155904	ENSGT00390000005830	ENSGT01100000263525.a.b.a.b	ENSGT00940000160377.a	ENSGT00390000010157.b.k	ENSGT00390000018541	ENSGT00940000159428.e.b	ENSGT00940000156051.c.a	ENSGT00940000154396.b.a.a.a.b ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.a	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b	ENSGT00950000182933.B.a.b	ENSGT00940000165523.b	ENSGT00940000159473.b	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00940000168750	ENSGT00940000155830.c	ENSGT00940000159039.a	ENSGT00940000157513
P. kingsleyae	MODERN SPECIES	99	GPR139 (ENSPKIG00000005512)	nme2b.2 (ENSPKIG00000005485)	UTP18 (ENSPKIG00000005441)	ENSPKIG00000005416	ENSPKIG00000005393	ENSPKIG00000005379	aldh3b1 (ENSPKIG00000005351)	clpp (ENSPKIG00000005333)	si:ch211-286b5.5 (ENSPKIG00000005300)	carm1 (ENSPKIG00000005227)	yipf2 (ENSPKIG00000005186)	timm29 (ENSPKIG00000005175)	slc25a23b (ENSPKIG00000005137)	KHSRP (ENSPKIG00000005077)	rfx1a (ENSPKIG00000005038)	ENSPKIG00000005016 ##22	ENSPKIG00000004960	ENSPKIG00000004824	ENSPKIG00000004759	ENSPKIG00000004715	ENSPKIG00000004702	dhps (ENSPKIG00000004683)	ENSPKIG00000004668	NHERF2 (ENSPKIG00000004643)	zgc:77748 (ENSPKIG00000004632)	ENSPKIG00000004613	NACC1 (ENSPKIG00000004578)	ier2a (ENSPKIG00000004550)	CACNA1A (ENSPKIG00000004288)	gtf2f1 (ENSPKIG00000004185)	ENSPKIG00000004147
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015032236	ENSSFOG00015027744	ENSSFOG00015028342	ENSSFOG00015029912	ENSSFOG00015028073	ENSSFOG00015032348	aldh3b1 (ENSSFOG00015030068)	clpp (ENSSFOG00015031877)	carm1 (ENSSFOG00015033308)	yipf2 (ENSSFOG00015029708)	timm29 (ENSSFOG00015032616)	slc25a23b (ENSSFOG00015010366)	ENSSFOG00015024812	KHSRP (ENSSFOG00015010767)	rfx1a (ENSSFOG00015010801)	ENSSFOG00015010849 ##22	ENSSFOG00015010879	ENSSFOG00015010934	ENSSFOG00015026046	ENSSFOG00015011044	slc25a17 (ENSSFOG00015011106)	dhps (ENSSFOG00015011150)	ENSSFOG00015011195	ENSSFOG00015011250	josd1 (ENSSFOG00015011264)	EP300 (ENSSFOG00015011294)	xpnpep3 (ENSSFOG00015011312)	st13 (ENSSFOG00015011345)	rbx1 (ENSSFOG00015011402)	ENSSFOG00015011414	rangap1a (ENSSFOG00015011432)
Clupeocephala	ANCESTRAL SPECIES	170	ENSGT01090000259993.B.c.c.a.b	ENSGT01020000230358.h.d.b.a	ENSGT01100000263566.b	ENSGT01020000230358.h.d.b.b	ENSGT01090000259993.B.c.b.a.a.a	ENSGT01090000259993.A.a.b	ENSGT00940000155904	ENSGT00390000005830	ENSGT01100000263525.a.b.a.b	ENSGT00940000160377	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00940000159428.e.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b	ENSGT00940000155366.b.a.a	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00390000007907
Otomorpha	ANCESTRAL SPECIES	185	ENSGT00940000158256.h	ENSGT00940000160433	ENSGT01100000263687	ENSGT00940000156867	ENSGT00510000048008	ENSGT00940000154883.e.b	ENSGT00390000012918.c	ENSGT00940000161294	ENSGT00390000008825.b.b	ENSGT00940000164514.b	ENSGT00390000004214	ENSGT00940000163471.a	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.a.b
Otophysi	ANCESTRAL SPECIES	8	ENSGT00390000014852.b	ENSGT00840000129970	ENSGT00940000157625.a.a	ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000156708.b	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j	ENSGT00940000157140.b.b.b	ENSGT00940000165343.c.b	ENSGT00390000012436.g	ENSGT00940000157805	ENSGT00640000091519	ENSGT00390000017673.b.l	ENSGT01050000244824.G	ENSGT00940000155729	ENSGT00940000156865.b
Characiphysae	ANCESTRAL SPECIES	33	ENSGT00940000161924	ENSGT00940000153514.a.a	ENSGT00390000014852.b	ENSGT00840000129970	ENSGT00940000157625.a.b.d	ENSGT00940000157625.a.a	ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000156708.b	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j	ENSGT00940000157140.b.b.b	ENSGT00940000165343.c.b	ENSGT00390000012436.g	ENSGT00940000157805	ENSGT00640000091519	ENSGT00390000017673.b.l	ENSGT01050000244824.G	ENSGT00940000155729	ENSGT00940000164726.a
Characiphysae_b	ANCESTRAL SPECIES	24	ENSGT00940000153514.a.a	ENSGT00390000014852.b	ENSGT00840000129970	ENSGT00940000157625.a.a	ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000156708.b	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j	ENSGT00940000157140.b.b.b	ENSGT00940000165343.c.b	ENSGT00390000012436.g	ENSGT00940000157805	ENSGT00640000091519	ENSGT00390000017673.b.l	ENSGT01050000244824.G	ENSGT00940000155729	ENSGT00940000164726.a
Characoidei	ANCESTRAL SPECIES	97	ENSGT00390000014852.b	ENSGT00840000129970	ENSGT00940000157625.a.a	ENSGT00940000157690	ENSGT00940000156201.a.b	ENSGT00940000165638.a.a	ENSGT00390000001390.a.b	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355	ENSGT00940000156708.b	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j	ENSGT00940000157140.b.b.a	ENSGT00940000165343.c.b	ENSGT00390000012436.g	ENSGT00940000157805	ENSGT00640000091519	ENSGT00390000017673.b.l	ENSGT01050000244824.G	ENSGT00940000155729	ENSGT00940000164726.a
Mexicana tetra	MODERN SPECIES	11	nucb1 (ENSAMXG00000032702)	GRID2IP (ENSAMXG00000013193)	slc5a11 (ENSAMXG00000040127)	arhgap17b (ENSAMXG00000007770)	aqp8a.1 (ENSAMXG00000037498)	aqp8b (ENSAMXG00000029940)	ENSAMXG00000035064	ENSAMXG00000043344	cbx4 (ENSAMXG00000035979)	tbc1d16 (ENSAMXG00000041524)	GAA (ENSAMXG00000031791)	ENSAMXG00000010246	TMEM104 (ENSAMXG00000025606)	GRIN2C (ENSAMXG00000039510)	rfx1a (ENSAMXG00000021077)	rln3a (ENSAMXG00000034611) ##22	ENSAMXG00000042598	smarca4a (ENSAMXG00000021023)	ldlra (ENSAMXG00000034717)	kri1 (ENSAMXG00000031825)	spc24 (ENSAMXG00000041119)	s1pr5a (ENSAMXG00000025307)	ENSAMXG00000038286	si:dkeyp-69e1.8 (ENSAMXG00000029085)	ENSAMXG00000031937	hmgxb4a (ENSAMXG00000030681)	ankrd54 (ENSAMXG00000020927)	foxred2 (ENSAMXG00000020917)	hmox1a (ENSAMXG00000042453)	mcm5 (ENSAMXG00000034157)	gcat (ENSAMXG00000020893)
Red-bellied piranha	MODERN SPECIES	114	GRID2IP (ENSPNAG00000003933)	slc5a11 (ENSPNAG00000025534)	arhgap17b (ENSPNAG00000025392)	AQP8 (ENSPNAG00000005421)	aqp8b (ENSPNAG00000025087)	ENSPNAG00000024658	cbx8a (ENSPNAG00000024649)	cbx4 (ENSPNAG00000024618)	tbc1d16 (ENSPNAG00000024605)	ENSPNAG00000024556	ENSPNAG00000024526	ENSPNAG00000024491	TMEM104 (ENSPNAG00000024346)	GRIN2C (ENSPNAG00000005556)	rfx1a (ENSPNAG00000024242)	rln3a (ENSPNAG00000003813) ##22	ENSPNAG00000024161	smarca4a (ENSPNAG00000024136)	ldlra (ENSPNAG00000024016)	kri1 (ENSPNAG00000023903)	spc24 (ENSPNAG00000023892)	s1pr5a (ENSPNAG00000023881)	ENSPNAG00000003795	si:dkeyp-69e1.8 (ENSPNAG00000023855)	hmgxb4a (ENSPNAG00000023830)	ankrd54 (ENSPNAG00000023810)	foxred2 (ENSPNAG00000023787)	hmox1a (ENSPNAG00000023750)	mcm5 (ENSPNAG00000023704)	gcat (ENSPNAG00000023604)	radil2a (ENSPNAG00000023548)
Electric eel	MODERN SPECIES	68	e4f1 (ENSEEEG00000004667)	GRID2IP (ENSEEEG00000004671)	slc5a11 (ENSEEEG00000004705)	arhgap17b (ENSEEEG00000005117)	AQP8 (ENSEEEG00000005210)	aqp8b (ENSEEEG00000005569)	ENSEEEG00000005585	cbx8a (ENSEEEG00000005588)	cbx4 (ENSEEEG00000005589)	tbc1d16 (ENSEEEG00000005592)	GAA (ENSEEEG00000005594)	ENSEEEG00000005610	TMEM104 (ENSEEEG00000005800)	GRIN2C (ENSEEEG00000005802)	rfx1a (ENSEEEG00000005804)	rln3a (ENSEEEG00000005857) ##22	ENSEEEG00000005861	smarca4a (ENSEEEG00000005959)	ldlra (ENSEEEG00000008019)	kri1 (ENSEEEG00000008024)	spc24 (ENSEEEG00000008027)	s1pr5a (ENSEEEG00000008028)	foxd7 (ENSEEEG00000008029)	si:dkeyp-69e1.8 (ENSEEEG00000008030)	hmgxb4a (ENSEEEG00000008031)	ankrd54 (ENSEEEG00000008033)	foxred2 (ENSEEEG00000008035)	hmox1a (ENSEEEG00000008040)	mcm5 (ENSEEEG00000008042)	gcat (ENSEEEG00000008048)	radil2a (ENSEEEG00000008073)
Channel catfish	MODERN SPECIES	11	e4f1 (ENSIPUG00000005379)	ENSIPUG00000005420	GRID2IP (ENSIPUG00000005427)	Slc5a11 (ENSIPUG00000005479)	arhgap17b (ENSIPUG00000005536)	AQP8 (ENSIPUG00000005591)	ENSIPUG00000005614	Cbx8 (ENSIPUG00000005650)	Cbx4 (ENSIPUG00000005679)	TBC1D16 (ENSIPUG00000005710)	gaa (ENSIPUG00000005743)	tnpo2 (ENSIPUG00000005768)	tmem104 (ENSIPUG00000005918)	grin2c (ENSIPUG00000005977)	rfx1a (ENSIPUG00000006017)	rln3a (ENSIPUG00000006077) ##22	ENSIPUG00000006087	smarca4a (ENSIPUG00000006107)	LDLR (ENSIPUG00000006346)	kri1 (ENSIPUG00000006407)	ENSIPUG00000006442	fbxw9 (ENSIPUG00000006454)	antkmt (ENSIPUG00000006474)	xpo6 (ENSIPUG00000006516)	NME4 (ENSIPUG00000006600)	nfix (ENSIPUG00000006654)	gadd45gip1 (ENSIPUG00000006827)	zgc:158403 (ENSIPUG00000006835)	Tspan1 (ENSIPUG00000006854)	znf653 (ENSIPUG00000006870)	swsap1 (ENSIPUG00000006880)
Cyprinoidei	ANCESTRAL SPECIES	77	ENSGT00390000014852.b	ENSGT00840000129970	ENSGT01030000235046	ENSGT00940000157625.a.a	ENSGT00940000157690	ENSGT00940000156201.a.b.a	ENSGT00940000165638.a.a	ENSGT00940000158476.b	ENSGT00940000160081.c.b	ENSGT00940000158541	ENSGT00940000159355.c	ENSGT00940000156708.b	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j	ENSGT00940000157140.b.b.b	ENSGT00940000165343.c.b	ENSGT00390000012436.g	ENSGT00940000157805	ENSGT00640000091519	ENSGT00390000017673.b.l	ENSGT01050000244824.G	ENSGT00940000155729.s.a	ENSGT00940000156865.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	73	ENSGT00940000159176.g	ENSGT00390000014852.b.a	ENSGT00840000129970.b	ENSGT01030000235046	ENSGT00940000157625.a.a.b	ENSGT00940000157690	ENSGT00940000156201.a.b.a.a	ENSGT00940000165638.a.a.a	ENSGT00940000158476.b.a	ENSGT00940000160081.c.b.a	ENSGT00940000158541.b	ENSGT00940000156708.b.b	ENSGT00390000001244.d	ENSGT00940000156964.B.b	ENSGT01050000244879.a.b.e.f	ENSGT00940000154396.b.a.a.a.c ##22	ENSGT00940000155603.B.a	ENSGT00940000156887.a.b	ENSGT00940000154819.a.b.c.a.b	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a.j.a	ENSGT00940000157140.b.b.b.f	ENSGT00940000165343.c.b.a.b	ENSGT00390000012436.g.a	ENSGT00940000157805.b	ENSGT00640000091519.d	ENSGT00390000017673.b.l.c	ENSGT01050000244824.G.g	ENSGT00940000155729.s.a	ENSGT00940000156865.b.b
Goldfish	MODERN SPECIES	22	msrb1a (ENSCARG00000010451)	fahd1 (ENSCARG00000010447)	hagh (ENSCARG00000009936)	zgc:113333 (ENSCARG00000009905)	e4f1 (ENSCARG00000009892)	GRID2IP (ENSCARG00000009870)	slc5a11 (ENSCARG00000009864)	ENSCARG00000009381	aqp8b (ENSCARG00000009266)	cbx8a (ENSCARG00000009252)	cbx4 (ENSCARG00000009243)	tnpo2a (ENSCARG00000009157)	TMEM104 (ENSCARG00000009121)	GRIN2C (ENSCARG00000009070)	rfx1a (ENSCARG00000009027)	rln3a (ENSCARG00000009010) ##22	smarca4a (ENSCARG00000008929)	ldlra (ENSCARG00000007959)	kri1 (ENSCARG00000007775)	spc24 (ENSCARG00000007745)	s1pr5a (ENSCARG00000007740)	foxd7 (ENSCARG00000007735)	hmgxb4a (ENSCARG00000007705)	ankrd54 (ENSCARG00000007691)	hmox1a (ENSCARG00000007675)	mcm5 (ENSCARG00000007468)	gcat (ENSCARG00000007389)	tom1 (ENSCARG00000007345)	zgc:171844 (ENSCARG00000007326)	ENSCARG00000063219	cdip1 (ENSCARG00000063212)
Cyprininae_a	ANCESTRAL SPECIES	93	ENSGT00940000159176.g	ENSGT00390000014852.b.a	ENSGT00840000129970.b	ENSGT01030000235046	ENSGT00940000157625.a.a.b	ENSGT00940000157690	ENSGT00940000156201.a.b.a.a	ENSGT00940000165638.a.a.a	ENSGT00940000158476.b.a	ENSGT00940000160081.c.b.a	ENSGT00940000158541.b	ENSGT00940000156708.b.b	ENSGT00390000001244.d	ENSGT00940000156964.B.b	ENSGT01050000244879.a.b.e.f	ENSGT00940000154396.b.a.a.a.c ##22	ENSGT00940000155603.B.a	ENSGT00940000156887.a.b	ENSGT00400000024875.d.e	ENSGT00940000154819.a.b.c.a.b	ENSGT01050000244887.A.a.a.a.j.a	ENSGT00390000005605.d	ENSGT00390000005584	ENSGT00940000157140.b.b.b.f	ENSGT00940000165343.c.b.a.b	ENSGT00390000012436.g.a	ENSGT00940000157805.b	ENSGT00640000091519.d	ENSGT00390000017673.b.l.c	ENSGT01050000244824.G.g	ENSGT00940000156865.b.b
Common carp reference	MODERN SPECIES	3	hagh (ENSCCRG00000078582)	zgc:113333 (ENSCCRG00000036100)	ENSCCRG00000081625	slc5a11 (ENSCCRG00000046398)	ENSCCRG00000046269	aqp8b (ENSCCRG00000039607)	cbx8a (ENSCCRG00000073016)	ENSCCRG00000036111	cbx4 (ENSCCRG00000058350)	tbc1d16 (ENSCCRG00000047509)	tbc1d16 (ENSCCRG00000074539)	tnpo2a (ENSCCRG00000016423)	ENSCCRG00000016400	ENSCCRG00000016386	rfx1a (ENSCCRG00000016380)	rln3a (ENSCCRG00000016377) ##22	ENSCCRG00000016343	smarca4a (ENSCCRG00000005852)	ENSCCRG00000005753	ldlra (ENSCCRG00000005451)	s1pr5a (ENSCCRG00000077475)	kri1 (ENSCCRG00000057189)	foxd7 (ENSCCRG00000076821)	ENSCCRG00000059448	hmgxb4a (ENSCCRG00000001001)	ENSCCRG00000056915	gcat (ENSCCRG00000071612)	mcm5 (ENSCCRG00000000956)	tom1 (ENSCCRG00000000946)	zgc:171844 (ENSCCRG00000000941)	mfsd6l (ENSCCRG00000054768)
Golden-line barbel	MODERN SPECIES	1224												tnpo2a (ENSSGRG00000041594)	TMEM104 (ENSSGRG00000041576)	ENSSGRG00000041575	rfx1a (ENSSGRG00000041507)	rln3a (ENSSGRG00000041506) ##22	ENSSGRG00000041505	smarca4a (ENSSGRG00000040309)	ENSSGRG00000040297	ENSSGRG00000040295	ldlra (ENSSGRG00000037473)	kri1 (ENSSGRG00000037461)	spc24 (ENSSGRG00000037450)	foxd7 (ENSSGRG00000037449)
Cyprininae	ANCESTRAL SPECIES	56	ENSGT00940000159176.h	ENSGT00940000153514.a.a	ENSGT00390000014852.b.b	ENSGT00840000129970.a	ENSGT00940000157625.a.a.a	ENSGT00940000156201.a.b.a.b	ENSGT00940000165638.a.a.b	ENSGT00940000158476.b.b	ENSGT00940000160081.c.b.b	ENSGT00940000158541.a	ENSGT00940000159355.c	ENSGT00940000156708.b.a.b	ENSGT00390000001244.c	ENSGT00940000156964.B.a	ENSGT01050000244879.a.b.e.e	ENSGT00940000154396.b.a.a.a.d ##22	ENSGT00940000155603.B.b	ENSGT00940000156887.a.a	ENSGT00940000154819.a.b.c.a.a	ENSGT01050000244887.A.a.a.a.j.b	ENSGT00940000157140.b.b.b.e	ENSGT00940000165343.c.b.a.a	ENSGT00390000012436.g.b	ENSGT00940000157805.a.a	ENSGT00640000091519.c	ENSGT00390000017673.b.l.d	ENSGT01050000244824.G.h	ENSGT00940000155729.s.b	ENSGT01030000235499.B	ENSGT00510000050089.b.d	ENSGT00950000182860.a.a.a.ub.a.e
Goldfish	MODERN SPECIES	20	ndufb10 (ENSCARG00000015423)	fahd1 (ENSCARG00000015455)	hagh (ENSCARG00000015462)	zgc:113333 (ENSCARG00000015651)	e4f1 (ENSCARG00000015677)	GRID2IP (ENSCARG00000015710)	ENSCARG00000015792	cbx8a (ENSCARG00000016326)	cbx4 (ENSCARG00000016344)	tbc1d16 (ENSCARG00000016367)	GAA (ENSCARG00000016425)	tnpo2a (ENSCARG00000016894)	TMEM104 (ENSCARG00000017021)	GRIN2C (ENSCARG00000017054)	rfx1a (ENSCARG00000017113)	rln3a (ENSCARG00000017398) ##22	ENSCARG00000017413	smarca4a (ENSCARG00000017563)	ldlra (ENSCARG00000017938)	spc24 (ENSCARG00000019829)	ENSCARG00000019840	s1pr5a (ENSCARG00000019861)	foxd7 (ENSCARG00000019863)	si:dkeyp-69e1.8 (ENSCARG00000019866)	hmgxb4a (ENSCARG00000019870)	ankrd54 (ENSCARG00000019881)	foxred2 (ENSCARG00000019900)	hmox1a (ENSCARG00000019905)	mcm5 (ENSCARG00000019928)	GCAT (ENSCARG00000020146)	ENSCARG00000020258
Cyprininae_a	ANCESTRAL SPECIES	12	ENSGT00940000159176.h	ENSGT00940000153514.a.a	ENSGT00390000014852.b.b	ENSGT00840000129970.a	ENSGT00940000157625.a.a.a	ENSGT00940000156201.a.b.a.b	ENSGT00940000165638.a.a.b	ENSGT00940000158476.b.b	ENSGT00940000160081.c.b.b	ENSGT00940000158541.a	ENSGT00940000159355.c	ENSGT00940000156708.b.a.b	ENSGT00390000001244.c	ENSGT00940000156964.B.a	ENSGT01050000244879.a.b.e.e	ENSGT00940000154396.b.a.a.a.d ##22	ENSGT00940000155603.B.b	ENSGT00940000156887.a.a	ENSGT00940000154819.a.b.c.a.a	ENSGT00390000005605.c	ENSGT01050000244887.A.a.a.a.j.b	ENSGT00940000157140.b.b.b.e	ENSGT00940000165343.c.b.a.a	ENSGT01030000234881.d	ENSGT00940000157805.a.a	ENSGT00640000091519.c	ENSGT00390000017673.b.l.d	ENSGT01050000244824.G.h	ENSGT00940000155729.s.b	ENSGT01030000235499.B	ENSGT00510000050089.b.d
Golden-line barbel	MODERN SPECIES	677		zgc:113333 (ENSSGRG00000021641)	e4f1 (ENSSGRG00000021638)	GRID2IP (ENSSGRG00000021633)	ENSSGRG00000021389	ENSSGRG00000021381	cbx8a (ENSSGRG00000021378)	cbx4 (ENSSGRG00000021373)	tbc1d16 (ENSSGRG00000021356)	GAA (ENSSGRG00000020971)	ENSSGRG00000020842	TMEM104 (ENSSGRG00000020827)	ENSSGRG00000020824	GRIN2C (ENSSGRG00000020822)	rfx1a (ENSSGRG00000020708)	rln3a (ENSSGRG00000020704) ##22	ENSSGRG00000020702	smarca4a (ENSSGRG00000019601)	ENSSGRG00000019590	ENSSGRG00000019587	kri1 (ENSSGRG00000019586)	foxd7 (ENSSGRG00000019585)	si:dkeyp-69e1.8 (ENSSGRG00000019584)	hmgxb4a (ENSSGRG00000019583)	foxred2 (ENSSGRG00000019573)	hmox1a (ENSSGRG00000019570)	mcm5 (ENSSGRG00000019544)	ENSSGRG00000019542
Common carp reference	MODERN SPECIES	1	ENSCCRG00000064945	zgc:113333 (ENSCCRG00000038612)	e4f1 (ENSCCRG00000029009)	ENSCCRG00000036117	ENSCCRG00000036125	aqp8b (ENSCCRG00000036138)	cbx8a (ENSCCRG00000070578)	cbx4 (ENSCCRG00000067339)	tbc1d16 (ENSCCRG00000036164)	ENSCCRG00000076899	ENSCCRG00000036192	tnpo2a (ENSCCRG00000036218)	ENSCCRG00000033769	ENSCCRG00000036592	rfx1a (ENSCCRG00000051836)	rln3a (ENSCCRG00000024488) ##22	ENSCCRG00000024491	smarca4a (ENSCCRG00000001090)	ENSCCRG00000071569	ldlra (ENSCCRG00000040492)	kri1 (ENSCCRG00000005433)	ENSCCRG00000005420	s1pr5a (ENSCCRG00000078650)	ENSCCRG00000078920	si:dkeyp-69e1.8 (ENSCCRG00000056356)	ENSCCRG00000064452	ankrd54 (ENSCCRG00000005008)	foxred2 (ENSCCRG00000004995)	hmox1a (ENSCCRG00000071293)	mcm5 (ENSCCRG00000000832)	ENSCCRG00000063496
Zebrafish	MODERN SPECIES	18	arhgap17b (ENSDARG00000062263)	ENSDARG00000092455	slc5a11 (ENSDARG00000019932)	GRID2IP (ENSDARG00000076103)	e4f1 (ENSDARG00000038243)	zgc:113333 (ENSDARG00000038242)	narfl (ENSDARG00000062216)	hagh (ENSDARG00000025338)	fahd1 (ENSDARG00000031657)	msrb1a (ENSDARG00000025436)	tnpo2a (ENSDARG00000038239)	TMEM104 (ENSDARG00000088560)	si:ch211-198m1.1 (ENSDARG00000093192)	GRIN2C (ENSDARG00000078149)	rfx1a (ENSDARG00000005883)	rln3a (ENSDARG00000070780) ##22	ENSDARG00000074850	smarca4a (ENSDARG00000077226)	ldlra (ENSDARG00000029476)	kri1 (ENSDARG00000075380)	spc24 (ENSDARG00000093622)	s1pr5a (ENSDARG00000040526)	zgc:123297 (ENSDARG00000056798)	pde6ga (ENSDARG00000056791)	ENSDARG00000031534	ENSDARG00000101990	ENSDARG00000101956	zgc:163079 (ENSDARG00000056773)	rprml (ENSDARG00000056768)	itgb3a (ENSDARG00000056767)	mettl2a (ENSDARG00000008105)
Clupeiformes	ANCESTRAL SPECIES	142	ENSGT00940000158256.h	ENSGT00940000160433	ENSGT01100000263687	ENSGT00940000156867	ENSGT00510000048008	ENSGT00940000154883.e.b	ENSGT00940000154883.e.a.f	ENSGT00390000012918.c	ENSGT00390000008825.b.b	ENSGT00940000164514.b	ENSGT00390000004214	ENSGT00940000163471.a	ENSGT00390000001244	ENSGT00940000156964.B	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a.j	ENSGT00940000165523.b	ENSGT00940000155366.b.a.a	ENSGT00940000159473.k	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00940000168750
Denticle herring	MODERN SPECIES	17	NHERF1 (ENSDCDG00000011616)	CASKIN2 (ENSDCDG00000011649)	ST6GALNAC2 (ENSDCDG00000011679)	ENSDCDG00000011685	jmjd6 (ENSDCDG00000011698)	mettl23 (ENSDCDG00000011721)	ENSDCDG00000011722	mfsd11 (ENSDCDG00000011727)	ubald2 (ENSDCDG00000011734)	ENSDCDG00000011737	tsen54 (ENSDCDG00000011744)	ENSDCDG00000011778	TMEM104 (ENSDCDG00000011813)	GRIN2C (ENSDCDG00000011930)	rfx1a (ENSDCDG00000014180)	rln3a (ENSDCDG00000015355) ##22	ENSDCDG00000015356	ENSDCDG00000015362	ENSDCDG00000015378	ENSDCDG00000015379	dhps (ENSDCDG00000015387)	NHERF2 (ENSDCDG00000015641)	ENSDCDG00000015647	ENSDCDG00000015648	sstr5 (ENSDCDG00000015653)	ENSDCDG00000015656	GPR139 (ENSDCDG00000015659)	proza (ENSDCDG00000015663)	gprc5ba (ENSDCDG00000015668)	iqck (ENSDCDG00000015670)	ENSDCDG00000015671
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT00390000000204	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000235061	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b	ENSGT00940000155366.b.a.a	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00390000007907	ENSGT00940000168750
Acanthomorphata	ANCESTRAL SPECIES	2	ENSGT00940000157333.b	ENSGT00390000000204	ENSGT00950000182895.a.a.a.b	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT00390000008063	ENSGT01100000263497.E.a.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT01030000235004	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.a	ENSGT00940000162556.E.b.a	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000157195.m	ENSGT00730000111690.A.a.b	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.a	ENSGT00940000162556.E.b.a	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Tiger tail seahorse	MODERN SPECIES	373										ENSHCOG00000006159	zgc:153240 (ENSHCOG00000006152)	rhot1a (ENSHCOG00000006138)	ENSHCOG00000006093	ENSHCOG00000006085	rfx1a (ENSHCOG00000006033)	ENSHCOG00000005939 ##22	ENSHCOG00000005932 #15	ENSHCOG00000005914	ENSHCOG00000005869	dhps (ENSHCOG00000005834)	NHERF2 (ENSHCOG00000005817)	sstr5 (ENSHCOG00000005798)	ENSHCOG00000005760	ENSHCOG00000005753	spag9a (ENSHCOG00000005724)	tob1a (ENSHCOG00000005514)	ENSHCOG00000005509	ANKRD40 (ENSHCOG00000005501)	luc7l3 (ENSHCOG00000000181)	ENSHCOG00000000819	ENSHCOG00000005448
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000164904.b	ENSGT00730000111690.A.a.a.a.a	ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Cyprinodontoidei	ANCESTRAL SPECIES	18	ENSGT00730000111690.A.a.a.a.a.c.a.a	ENSGT00730000111690.A.a.a.a.a.c.a.b	ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00390000013973.B.g.a	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.b.a.e.b.b	ENSGT00940000162556.E.b.a.e.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00940000165833
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00730000111690.A.a.b	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00390000013973.B.g.a	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b.a	ENSGT00940000162556.A.a.b	ENSGT00940000162556.E.b.a.e.b.b	ENSGT00940000162556.E.b.a.e.a.b	ENSGT00940000162556.E.b.a.e.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a.d	ENSGT00940000155366.b.a.a.c	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Poecilia	ANCESTRAL SPECIES	8	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00390000013973.B.g.a	ENSGT00390000005481	ENSGT00940000155641.g.a.c	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b.a	ENSGT00940000162556.A.a.b	ENSGT00940000162556.E.b.a.e.b.b.a	ENSGT00940000162556.E.b.a.e.a.b	ENSGT00940000162556.E.b.a.e.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a.d	ENSGT00940000155366.b.a.a.c	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Guppy	MODERN SPECIES	460	ENSPREG00000001555	ENSPREG00000001550	ENSPREG00000001530	ENSPREG00000001521	zgc:153240 (ENSPREG00000001448)	rhot1a (ENSPREG00000001396)	ENSPREG00000001366	ENSPREG00000001331	ENSPREG00000001307	ENSPREG00000001296	ENSPREG00000001276	ENSPREG00000001267	ENSPREG00000001250	ENSPREG00000001245	rfx1a (ENSPREG00000001226)	rln3a (ENSPREG00000001209) ##22	ENSPREG00000001195	ENSPREG00000001121	ENSPREG00000001103	ENSPREG00000001056	dhps (ENSPREG00000001012)	NHERF2 (ENSPREG00000000959)	ENSPREG00000000935	sstr5 (ENSPREG00000000924)	ENSPREG00000000919	ENSPREG00000000902	ENSPREG00000000882	ENSPREG00000000876	ENSPREG00000000866	ENSPREG00000000850	ENSPREG00000000822
NAME_6	ANCESTRAL SPECIES	124												ENSGT00940000162556.D.b.b.a.c	ENSGT00940000162556.A.a.b	ENSGT00940000162556.E.b.a.e.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000163228.cb	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.k.b	ENSGT00950000182933.B.a.b.b.k.a	ENSGT00940000155366.b.a.a.d	ENSGT00950000182933.B.a.b.b.l	ENSGT00940000155366.b.a.a.c	ENSGT00940000153496.a.b.b
Amazon molly	MODERN SPECIES	392														ENSPFOG00000012732	rfx1a (ENSPFOG00000012660)	rln3a (ENSPFOG00000012657) ##22	ENSPFOG00000012652	ENSPFOG00000012466	ENSPFOG00000012452	ENSPFOG00000022052	dhps (ENSPFOG00000012375)	NHERF2 (ENSPFOG00000012348)	hydin (ENSPFOG00000012208)	sstr5 (ENSPFOG00000012182)	ENSPFOG00000020772	ENSPFOG00000012163	ENSPFOG00000012170	ENSPFOG00000022434	ENSPFOG00000022815	ENSPFOG00000012155	spag9a (ENSPFOG00000012040)
Sailfin molly	MODERN SPECIES	1358												ENSPLAG00000018664	ENSPLAG00000018681	ENSPLAG00000018692	rfx1a (ENSPLAG00000018708)	rln3a (ENSPLAG00000018750) ##22	ENSPLAG00000018791	ENSPLAG00000018842	ENSPLAG00000018851	ENSPLAG00000018875	dhps (ENSPLAG00000018904)	NHERF2 (ENSPLAG00000018921)	ENSPLAG00000018954
Platyfish	MODERN SPECIES	7	septin9a (ENSXMAG00000014393)	ENSXMAG00000022463	ENSXMAG00000025561	ENSXMAG00000026645	TNRC6C (ENSXMAG00000025971)	ENSXMAG00000014374	ENSXMAG00000014373	zgc:153240 (ENSXMAG00000014368)	rhot1a (ENSXMAG00000014316)	ENSXMAG00000014302	ENSXMAG00000014293	ENSXMAG00000014290	ENSXMAG00000023360	ENSXMAG00000022278	rfx1a (ENSXMAG00000014267)	rln3a (ENSXMAG00000014265) ##22	ENSXMAG00000014262	ENSXMAG00000014217	ENSXMAG00000029407	ENSXMAG00000024593	dhps (ENSXMAG00000014181)	NHERF2 (ENSXMAG00000014174)	sstr5 (ENSXMAG00000014160)	ENSXMAG00000020151	ENSXMAG00000009044	ENSXMAG00000009042	ENSXMAG00000024450	spag9a (ENSXMAG00000014104)	tob1a (ENSXMAG00000019792)	ENSXMAG00000014100	ANKRD40 (ENSXMAG00000014096)
NAME_4	ANCESTRAL SPECIES	49	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT00730000111690.A.a.a.a.a.d	ENSGT00730000111690.A.a.a.a.a.c.a.a	ENSGT00730000111690.A.a.a.a.a.c.a.b	ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00390000013973.B.g.a	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b
Mummichog	MODERN SPECIES	758														ENSFHEG00000016200	rfx1a (ENSFHEG00000016377)	RLN3 (ENSFHEG00000016400) ##22	ENSFHEG00000016405	ENSFHEG00000016501	ENSFHEG00000016514	ENSFHEG00000016523	dhps (ENSFHEG00000016542)	ENSFHEG00000016570
Sheepshead minnow	MODERN SPECIES	439	ENSCVAG00000002993	septin9a (ENSCVAG00000002992)	TNRC6C (ENSCVAG00000002977)	ENSCVAG00000002947	ENSCVAG00000002932	zgc:153240 (ENSCVAG00000002923)	rhot1a (ENSCVAG00000002888)	ENSCVAG00000002808	ENSCVAG00000002796	ENSCVAG00000002785	ENSCVAG00000002782	ENSCVAG00000002779	ENSCVAG00000002777	ENSCVAG00000002774	rfx1a (ENSCVAG00000002770)	rln3a (ENSCVAG00000002766) ##22	ENSCVAG00000002763 #15	ENSCVAG00000002750	ENSCVAG00000000940	ENSCVAG00000002730	dhps (ENSCVAG00000002725)	NHERF2 (ENSCVAG00000002714)	ENSCVAG00000002709	sstr5 (ENSCVAG00000002705)	ENSCVAG00000002703	ENSCVAG00000002700	ENSCVAG00000002695	ENSCVAG00000002689	ENSCVAG00000002682	spag9a (ENSCVAG00000002675)	tob1a (ENSCVAG00000002658)
Aplocheiloidei	ANCESTRAL SPECIES	7	ENSGT00940000157333.b	ENSGT00390000000204	ENSGT00940000164904.b	ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Mangrove rivulus	MODERN SPECIES	61	septin9a (ENSKMAG00000020917)	ENSKMAG00000020986	ENSKMAG00000020994	TNRC6C (ENSKMAG00000021023)	ENSKMAG00000021100	ENSKMAG00000021112	ENSKMAG00000021122	zgc:153240 (ENSKMAG00000021128)	rhot1a (ENSKMAG00000021143)	ADAP2 (ENSKMAG00000021176)	ENSKMAG00000021200	ENSKMAG00000021220	ENSKMAG00000021230	ENSKMAG00000021236	rfx1a (ENSKMAG00000021241)	rln3a (ENSKMAG00000021259) ##22	ENSKMAG00000021263	ENSKMAG00000021274	ENSKMAG00000000149	ENSKMAG00000000183	dhps (ENSKMAG00000000196)	NHERF2 (ENSKMAG00000000277)	sstr5 (ENSKMAG00000000287)	ENSKMAG00000000297	ENSKMAG00000000310	ENSKMAG00000000319	ENSKMAG00000000325	ENSKMAG00000000369	spag9a (ENSKMAG00000000392)	tob1a (ENSKMAG00000000536)	ENSKMAG00000000550
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015008445	ENSNFUG00015008451	ENSNFUG00015008456	LUC7L3 (ENSNFUG00015008466)	ANKRD40 (ENSNFUG00015008504)	ENSNFUG00015008508	ENSNFUG00015008512	TOB1 (ENSNFUG00015008514)	SPAG9A (ENSNFUG00015008543)	ENSNFUG00015008866	Nfu_g_1_019538 (ENSNFUG00015008868)	ENSNFUG00015008873	ENSNFUG00015008880	FAM195A (ENSNFUG00015008894)	rfx1a (ENSNFUG00015009098)	RLN3A (ENSNFUG00015010134) ##22	IL12RB2L (ENSNFUG00015010151)	ENSNFUG00015010170	FBXW9 (ENSNFUG00015010217)	ENSNFUG00015010222	dhps (ENSNFUG00015010246)	SLC9A3R2 (ENSNFUG00015010352)	ENSNFUG00015010360	sstr5 (ENSNFUG00015010363)	ENSNFUG00015010370	ENSNFUG00015010378	ENSNFUG00015010393	ENSNFUG00015010425	rhot1a (ENSNFUG00015010680)	C3H17ORF75 (ENSNFUG00015011835)	PYCR1 (ENSNFUG00015011868)
Oryzias	ANCESTRAL SPECIES		ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e.p	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.o	ENSGT00950000182933.B.a.b.b.p	ENSGT01030000234810	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b
Oryzias_b	ANCESTRAL SPECIES	11	ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000162556.E.a.n.a	ENSGT00940000162556.E.b.a	ENSGT01050000244879.a.b.e.p	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.o	ENSGT00950000182933.B.a.b.b.p	ENSGT01030000234810	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b
Indian medaka	MODERN SPECIES	9	ENSOMEG00000014111	ENSOMEG00000014124	septin9a (ENSOMEG00000014214)	TNRC6C (ENSOMEG00000000357)	ENSOMEG00000014388	ENSOMEG00000014435	ENSOMEG00000014453	znf207a (ENSOMEG00000014474)	zgc:153240 (ENSOMEG00000014513)	rhot1a (ENSOMEG00000014577)	ENSOMEG00000014605	ENSOMEG00000014687	ENSOMEG00000014731	ENSOMEG00000014738	rfx1a (ENSOMEG00000014767)	rln3a (ENSOMEG00000014778) ##22	ENSOMEG00000014806	ENSOMEG00000014877	dhps (ENSOMEG00000014905)	NHERF2 (ENSOMEG00000014926)	sstr5 (ENSOMEG00000014936)	ENSOMEG00000014953	ENSOMEG00000014971	ENSOMEG00000000374	ENSOMEG00000014998	spag9a (ENSOMEG00000015271)	tob1a (ENSOMEG00000015327)	ENSOMEG00000015354	ANKRD40 (ENSOMEG00000015372)	luc7l3 (ENSOMEG00000015396)	ENSOMEG00000015666
Javanese ricefish	MODERN SPECIES	22	ENSOJAG00000007060	ENSOJAG00000007040	znf207a (ENSOJAG00000006969)	zgc:153240 (ENSOJAG00000006947)	ENSOJAG00000006141	ENSOJAG00000006101	ENSOJAG00000006040	rfx1a (ENSOJAG00000005927)	ENSOJAG00000005832	rhot1a (ENSOJAG00000005748)	ADAP2 (ENSOJAG00000005700)	ENSOJAG00000015830	ENSOJAG00000015812	ENSOJAG00000015823	RFX1 (ENSOJAG00000015800)	rln3a (ENSOJAG00000015784) ##22	ENSOJAG00000015673	ENSOJAG00000015167	dhps (ENSOJAG00000015104)	ENSOJAG00000015093	NHERF2 (ENSOJAG00000015078)	sstr5 (ENSOJAG00000015072)	ENSOJAG00000015065	ENSOJAG00000015059	ENSOJAG00000015056	ENSOJAG00000014977	tob1a (ENSOJAG00000014375)	ENSOJAG00000014368	ANKRD40 (ENSOJAG00000014362)	luc7l3 (ENSOJAG00000014345)	ENSOJAG00000014332
Oryzias_a	ANCESTRAL SPECIES	10	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT00730000111690.A.a.a.a.a	ENSGT00730000111690.A.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT01050000244879.a.b.e.p	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.o	ENSGT00950000182933.B.a.b.b.p	ENSGT01030000234810	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792	ENSGT00950000183213.a.b
Japanese Medaka HdrR	MODERN SPECIES	22	NUP85 (ENSORLG00000009756)	sumo2b (ENSORLG00000009773)	jpt1b (ENSORLG00000028408)	septin9a (ENSORLG00000009803)	ENSORLG00000021937	TNRC6C (ENSORLG00000009837)	ENSORLG00000009853	ENSORLG00000009867	ENSORLG00000009880	znf207a (ENSORLG00000023077)	zgc:153240 (ENSORLG00000025939)	rhot1a (ENSORLG00000010097)	ENSORLG00000010192	ENSORLG00000010214	rfx1a (ENSORLG00000010273)	rln3a (ENSORLG00000027728) ##22	ENSORLG00000026757	ENSORLG00000010363	ENSORLG00000029272	dhps (ENSORLG00000010415)	ENSORLG00000027854	sstr5 (ENSORLG00000010452)	ENSORLG00000027535	ENSORLG00000029028	ENSORLG00000010458	ENSORLG00000029819	ENSORLG00000027081	ENSORLG00000010577	tob1a (ENSORLG00000010600)	ENSORLG00000010607	ANKRD40 (ENSORLG00000010622)
Chinese medaka	MODERN SPECIES	686	NUP85 (ENSOSIG00000014825)	ENSOSIG00000015208	jpt1b (ENSOSIG00000015226)	septin9a (ENSOSIG00000015233)	ENSOSIG00000015257	ENSOSIG00000015258	ENSOSIG00000015319	ENSOSIG00000015321	ENSOSIG00000015323	znf207a (ENSOSIG00000015327)	zgc:153240 (ENSOSIG00000015330)	rhot1a (ENSOSIG00000015339)	ENSOSIG00000015803	ENSOSIG00000015806	rfx1a (ENSOSIG00000015827)	rln3a (ENSOSIG00000016452) ##22	ENSOSIG00000016455	ENSOSIG00000016459	ENSOSIG00000016483	dhps (ENSOSIG00000016486)	NHERF2 (ENSOSIG00000016492)	sstr5 (ENSOSIG00000016493)	ENSOSIG00000016494	ENSOSIG00000016498	ENSOSIG00000016499	ENSOSIG00000016502	spag9a (ENSOSIG00000016519)	tob1a (ENSOSIG00000016941)	ENSOSIG00000016943	ANKRD40 (ENSOSIG00000016946)	luc7l3 (ENSOSIG00000016951)
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000157195.m	ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a.a.b	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00730000111690.A.a.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Pomacentridae_A	ANCESTRAL SPECIES	40	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00730000111690.A.a.a.b.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.q	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Amphiprion	ANCESTRAL SPECIES	31	ENSGT00940000157333.b	ENSGT00390000000204	ENSGT00940000164904.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.q	ENSGT00940000155366.b.a.a.e	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000155366.b.a.a.f	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Clown anemonefish	MODERN SPECIES	913							ENSAOCG00000009814	ENSAOCG00000009824	znf207a (ENSAOCG00000009894)	zgc:153240 (ENSAOCG00000009929)	rhot1a (ENSAOCG00000002190)	ENSAOCG00000001836	ENSAOCG00000010142	KHSRP (ENSAOCG00000010189)	rfx1a (ENSAOCG00000010235)	RLN3 (ENSAOCG00000010249) ##22	ENSAOCG00000010268	ENSAOCG00000010374	ENSAOCG00000010396	ENSAOCG00000010406	dhps (ENSAOCG00000010437)
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000009224	ENSAPEG00000009202	septin9a (ENSAPEG00000009133)	TNRC6C (ENSAPEG00000009020)	ENSAPEG00000009002	ENSAPEG00000008962	ENSAPEG00000008925	ENSAPEG00000008911	znf207a (ENSAPEG00000008888)	zgc:153240 (ENSAPEG00000008841)	rhot1a (ENSAPEG00000008727)	ENSAPEG00000008673	ENSAPEG00000008653	KHSRP (ENSAPEG00000008575)	rfx1a (ENSAPEG00000008546)	rln3a (ENSAPEG00000008528) ##22	ENSAPEG00000008511	ENSAPEG00000008429	ENSAPEG00000008404	ENSAPEG00000008389	dhps (ENSAPEG00000008349)	NHERF2 (ENSAPEG00000008333)	sstr5 (ENSAPEG00000008314)	ENSAPEG00000008296	ENSAPEG00000008284	ENSAPEG00000008276	ENSAPEG00000008261	ENSAPEG00000008248	spag9a (ENSAPEG00000008205)	tob1a (ENSAPEG00000008187)	ENSAPEG00000008172
Spiny chromis	MODERN SPECIES	1540									rhot1a (ENSAPOG00000012822)	ADAP2 (ENSAPOG00000012927)	ENSAPOG00000012943	ENSAPOG00000012961	ENSAPOG00000012976	KHSRP (ENSAPOG00000012989)	rfx1a (ENSAPOG00000013003)	rln3a (ENSAPOG00000013015) ##22	ENSAPOG00000013100	ENSAPOG00000013185
Bicolor damselfish	MODERN SPECIES	695							ENSSPAG00000007696	ENSSPAG00000007897	znf207a (ENSSPAG00000007908)	zgc:153240 (ENSSPAG00000008052)	rhot1a (ENSSPAG00000008078)	ADAP2 (ENSSPAG00000008125)	ENSSPAG00000008156	KHSRP (ENSSPAG00000008244)	rfx1a (ENSSPAG00000008305)	RLN3 (ENSSPAG00000008460) ##22	ENSSPAG00000008464	ENSSPAG00000008512	GNA13 (ENSSPAG00000008595)	rgs9a (ENSSPAG00000008623)	ENSSPAG00000008690	ENSSPAG00000008753	MOSMO (ENSSPAG00000008779)	SDR42E2 (ENSSPAG00000008789)	ENSSPAG00000008815	mfsd13al (ENSSPAG00000008830)	ENSSPAG00000008846	KDELR2 (ENSSPAG00000008853)	ENSSPAG00000008872	GPR139 (ENSSPAG00000008885)	proza (ENSSPAG00000008896)
Cichlidae	ANCESTRAL SPECIES	16	ENSGT00730000111690.A.a.a.a.b	ENSGT00730000111690.A.a.a.a.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00730000111690.A.a.a.a.a.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.a.a	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	12	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.a.a	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Lyretail cichlid	MODERN SPECIES	310	ENSNBRG00000005420	ENSNBRG00000005534	ENSNBRG00000005552	ENSNBRG00000005568	ENSNBRG00000005584	ENSNBRG00000005602	znf207a (ENSNBRG00000005625)	zgc:153240 (ENSNBRG00000005635)	rhot1a (ENSNBRG00000005687)	ENSNBRG00000005785	ENSNBRG00000005804	ENSNBRG00000005818	ENSNBRG00000005851	KHSRP (ENSNBRG00000005876)	rfx1a (ENSNBRG00000006011)	ENSNBRG00000006159 ##22	ENSNBRG00000006205	ENSNBRG00000006242	ENSNBRG00000006314	dhps (ENSNBRG00000006341)	NHERF2 (ENSNBRG00000006388)	sstr5 (ENSNBRG00000006418)	ENSNBRG00000006467	ENSNBRG00000006475	ENSNBRG00000006495	spag9a (ENSNBRG00000006506)	tob1a (ENSNBRG00000006626)	ENSNBRG00000006634	ANKRD40 (ENSNBRG00000006650)	luc7l3 (ENSNBRG00000006654)	ENSNBRG00000006696
Haplochromini	ANCESTRAL SPECIES	12	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.a.a	ENSGT00730000111690.A.a.a.a.b.b.a.a.a	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a.a.a	ENSGT00390000008063.k.a.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a.a.b	ENSGT00940000160560.b.f.a.b.a.a.b	ENSGT00940000153496.a.b.b.h
Burton s mouthbrooder	MODERN SPECIES	842							ENSHBUG00000014507	znf207a (ENSHBUG00000014526)	zgc:153240 (ENSHBUG00000014547)	rhot1a (ENSHBUG00000014661)	ADAP2 (ENSHBUG00000014673)	ENSHBUG00000014685	ENSHBUG00000014693	KHSRP (ENSHBUG00000014760)	rfx1a (ENSHBUG00000014773)	rln3a (ENSHBUG00000000433) ##22	ENSHBUG00000014786	ENSHBUG00000014849	ENSHBUG00000014860	ENSHBUG00000014871	dhps (ENSHBUG00000014931)	NHERF2 (ENSHBUG00000014977)	sstr5 (ENSHBUG00000015019)	ENSHBUG00000015033	ENSHBUG00000015041	ENSHBUG00000015056
Haplochromini_A	ANCESTRAL SPECIES	14	ENSGT00730000111690.A.a.a.a.b.b.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.a.a	ENSGT00730000111690.A.a.a.a.b.b.a.a.a	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT01050000245616	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b.g.a	ENSGT00940000160560.b.f.a.b.a.a.a.a.b	ENSGT00940000160560.b.f.a.b.a.a.a.a.a	ENSGT00940000153496.a.b.b.h
P. nyererei	MODERN SPECIES	354	ENSPNYG00000014385	ENSPNYG00000014369	ENSPNYG00000014346	znf207a (ENSPNYG00000014312)	zgc:153240 (ENSPNYG00000014279)	ENSPNYG00000014263	rhot1a (ENSPNYG00000014164)	ADAP2 (ENSPNYG00000014086)	ENSPNYG00000014069	ENSPNYG00000014058	ENSPNYG00000014049	ENSPNYG00000014046	ENSPNYG00000014036	KHSRP (ENSPNYG00000014008)	rfx1a (ENSPNYG00000013918)	ENSPNYG00000013860 ##22	ENSPNYG00000013833	ENSPNYG00000013748	ENSPNYG00000013729	ENSPNYG00000013720	dhps (ENSPNYG00000013697)	NHERF2 (ENSPNYG00000013622)	sstr5 (ENSPNYG00000013600)	ENSPNYG00000013547	ENSPNYG00000013535	ENSPNYG00000013515	ENSPNYG00000013473	ENSPNYG00000013452	ENSPNYG00000013411	spag9a (ENSPNYG00000013345)	tob1a (ENSPNYG00000013333)
Haplochromini_B	ANCESTRAL SPECIES	33	ENSGT00730000111690.A.a.a.a.b.b.a.b.a	ENSGT00730000111690.A.a.a.a.b.b.b	ENSGT00730000111690.A.a.a.a.b.a.a	ENSGT00730000111690.A.a.a.a.b.b.a.a.a	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT01050000245616	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT01040000241353	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a.a.a.b	ENSGT00940000160560.b.f.a.b.a.a.a.a.a	ENSGT00940000153496.a.b.b.h	ENSGT00940000154208.c.a
Eastern happy	MODERN SPECIES	16	ENSACLG00000000899	ENSACLG00000000921	ENSACLG00000000929	ENSACLG00000000949	ENSACLG00000000957	znf207a (ENSACLG00000000961)	zgc:153240 (ENSACLG00000000977)	ENSACLG00000001088	rhot1a (ENSACLG00000001110)	ENSACLG00000001246	ENSACLG00000001283	ENSACLG00000001396	ENSACLG00000001409	KHSRP (ENSACLG00000001424)	rfx1a (ENSACLG00000001622)	rln3a (ENSACLG00000001794) ##22	ENSACLG00000001853	ENSACLG00000001908	ENSACLG00000001925	dhps (ENSACLG00000001931)	NHERF2 (ENSACLG00000001982)	sstr5 (ENSACLG00000001989)	ENSACLG00000002000	ENSACLG00000002007	ENSACLG00000002013	ENSACLG00000002020	ENSACLG00000002053	ENSACLG00000002110	spag9a (ENSACLG00000002141)	tob1a (ENSACLG00000002374)	ENSACLG00000002467
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	474													ENSMZEG00005022965	KHSRP (ENSMZEG00005022974)	RFX1 (ENSMZEG00005023963)	rln3a (ENSMZEG00005023964) ##22	ENSMZEG00005023965	ENSMZEG00005023968	ENSMZEG00005023969	dhps (ENSMZEG00005023970)
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005011000	ENSMZEG00005011011	ENSMZEG00005011016	ENSMZEG00005011025	ENSMZEG00005011037	ENSMZEG00005011045	znf207a (ENSMZEG00005011055)	zgc:153240 (ENSMZEG00005011093)	rhot1a (ENSMZEG00005011127)	ENSMZEG00005011167	ENSMZEG00005011189	ENSMZEG00005011213	ENSMZEG00005011218	KHSRP (ENSMZEG00005011227)	rfx1a (ENSMZEG00005011253)	ENSMZEG00005011272 ##22	ENSMZEG00005011280	ENSMZEG00005011298	ENSMZEG00005011335	ENSMZEG00005011350	dhps (ENSMZEG00005011357)	NHERF2 (ENSMZEG00005011395)	sstr5 (ENSMZEG00005011416)	ENSMZEG00005011429	ENSMZEG00005011437	ENSMZEG00005011446	ENSMZEG00005011457	ENSMZEG00005011467	ENSMZEG00005011487	spag9a (ENSMZEG00005011543)	tob1a (ENSMZEG00005011637)
Nile tilapia	MODERN SPECIES	16	ENSONIG00000002205	ENSONIG00000042637	ENSONIG00000038827	ENSONIG00000002204	ENSONIG00000041549	ENSONIG00000002203	znf207a (ENSONIG00000002200)	zgc:153240 (ENSONIG00000002199)	rhot1a (ENSONIG00000002188)	ENSONIG00000002183	ENSONIG00000002178	ENSONIG00000039820	ENSONIG00000002176	KHSRP (ENSONIG00000002163)	rfx1a (ENSONIG00000002158)	rln3a (ENSONIG00000002154) ##22	ENSONIG00000002150	ENSONIG00000002147	ENSONIG00000002146	ENSONIG00000002145	dhps (ENSONIG00000002141)	NHERF2 (ENSONIG00000029228)	sstr5 (ENSONIG00000002138)	ENSONIG00000040919	ENSONIG00000037613	ENSONIG00000040254	ENSONIG00000002130	ENSONIG00000042915	ENSONIG00000002128	spag9a (ENSONIG00000002119)	tob1a (ENSONIG00000020854)
Midas cichlid	MODERN SPECIES	859		septin9a (ENSACIG00000008111)	TNRC6C (ENSACIG00000008075)	ENSACIG00000008053	ENSACIG00000008003	ENSACIG00000007980	znf207a (ENSACIG00000007962)	ENSACIG00000007952	zgc:153240 (ENSACIG00000007929)	rhot1a (ENSACIG00000007890)	ADAP2 (ENSACIG00000007785)	ENSACIG00000007671	ENSACIG00000007647	ENSACIG00000007641	rfx1a (ENSACIG00000007590)	RLN3 (ENSACIG00000007584) ##22	ENSACIG00000007560 #15	ENSACIG00000007518	ENSACIG00000007497	ENSACIG00000007487	ENSACIG00000007476	dhps (ENSACIG00000007456)	NHERF2 (ENSACIG00000007413)	sstr5 (ENSACIG00000007398)
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Tetraodontidae	ANCESTRAL SPECIES	8	ENSGT00390000000204	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806.p	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Fugu	MODERN SPECIES	17	GGA3 (ENSTRUG00000011006)	nup85 (ENSTRUG00000011208)	ENSTRUG00000011501	ENSTRUG00000011545	ENSTRUG00000031612	ENSTRUG00000024287	ENSTRUG00000011678	septin9a (ENSTRUG00000011554)	ENSTRUG00000011825	ENSTRUG00000024364	zgc:153240 (ENSTRUG00000011918)	rhot1a (ENSTRUG00000011952)	ENSTRUG00000012209	ENSTRUG00000012294	rfx1a (ENSTRUG00000012387)	rln3a (ENSTRUG00000012677) ##22	ENSTRUG00000020793	ENSTRUG00000012698	dhps (ENSTRUG00000028032)	ENSTRUG00000013001	ENSTRUG00000023143	dhps (ENSTRUG00000013039)	NHERF2 (ENSTRUG00000025428)	ENSTRUG00000019995	ENSTRUG00000020713	ENSTRUG00000013211	ENSTRUG00000022050	ENSTRUG00000023969	ENSTRUG00000022059	spag9a (ENSTRUG00000008729)	tob1a (ENSTRUG00000030892)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Ballan wrasse	MODERN SPECIES	741							ENSLBEG00000007870	ENSLBEG00000008015	ENSLBEG00000008544	znf207a (ENSLBEG00000008702)	zgc:153240 (ENSLBEG00000008779)	rhot1a (ENSLBEG00000008846)	ENSLBEG00000008946	ENSLBEG00000009124	rfx1a (ENSLBEG00000009191)	ENSLBEG00000009219 ##22
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00730000111690.A.a.a.f	ENSGT00940000157195.m	ENSGT00730000111690.A.a.a.e.b	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00390000000204	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT00940000157195.m	ENSGT00730000111690.A.a.a.e.a	ENSGT00940000157598	ENSGT01030000237991	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Lumpfish	MODERN SPECIES	23	ENSCLMG00005005210	ENSCLMG00005004127	ENSCLMG00005003868	ENSCLMG00005003833	ENSCLMG00005003828	ENSCLMG00005003826	ENSCLMG00005003824	zgc:153240 (ENSCLMG00005003820)	rhot1a (ENSCLMG00005003303)	ENSCLMG00005003285	ENSCLMG00005003281	ENSCLMG00005003279	ENSCLMG00005003278	KHSRP (ENSCLMG00005003277)	rfx1a (ENSCLMG00005013826)	rln3a (ENSCLMG00005013825) ##22	ENSCLMG00005013824	ENSCLMG00005013823	NHERF2 (ENSCLMG00005013822)	ENSCLMG00005013821	ENSCLMG00005013820	ENSCLMG00005013819	ENSCLMG00005013817	spag9a (ENSCLMG00005013119)	tob1a (ENSCLMG00005013111)	ENSCLMG00005013110	ANKRD40 (ENSCLMG00005013108)	luc7l3 (ENSCLMG00005013106)	ENSCLMG00005013103	lgals2a (ENSCLMG00005013101)	gtpbp1 (ENSCLMG00005011293)
Stickleback	MODERN SPECIES	10	ENSGACG00000012319	TNRC6C (ENSGACG00000012320)	ENSGACG00000012329	ENSGACG00000012332	ENSGACG00000012338	ENSGACG00000012343	ENSGACG00000012344	ENSGACG00000012347	ENSGACG00000012352	zgc:153240 (ENSGACG00000012357)	rhot1a (ENSGACG00000012363)	ENSGACG00000012403	ENSGACG00000012409	KHSRP (ENSGACG00000012422)	rfx1a (ENSGACG00000012429)	rln3a (ENSGACG00000012435) ##22	ENSGACG00000012437	ENSGACG00000012446	ENSGACG00000012449	dhps (ENSGACG00000012455)	ENSGACG00000012460	ENSGACG00000012468	dhps (ENSGACG00000012472)	NHERF2 (ENSGACG00000012529)	sstr5 (ENSGACG00000012535)	ENSGACG00000012543	ENSGACG00000012544	ENSGACG00000012548	ENSGACG00000012554	ENSGACG00000012556	ENSGACG00000012558
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00730000111690.A.a.a.f	ENSGT00940000157195.m	ENSGT00730000111690.A.a.a.e.b	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
Pike perch	MODERN SPECIES	27	septin9a (ENSSLUG00000021543)	ENSSLUG00000021663	ENSSLUG00000005285	ENSSLUG00000005303	TNRC6C (ENSSLUG00000005318)	ENSSLUG00000005341	ENSSLUG00000005350	ENSSLUG00000005365	znf207a (ENSSLUG00000005385)	zgc:153240 (ENSSLUG00000005408)	rhot1a (ENSSLUG00000005698)	ADAP2 (ENSSLUG00000010022)	ENSSLUG00000010040	KHSRP (ENSSLUG00000010074)	rfx1a (ENSSLUG00000010141)	RLN3 (ENSSLUG00000010337) ##22	ENSSLUG00000010342	ENSSLUG00000010351	ENSSLUG00000010378	ENSSLUG00000010381	dhps (ENSSLUG00000010396)	NHERF2 (ENSSLUG00000010426)	sstr5 (ENSSLUG00000010436)	ENSSLUG00000010441	ENSSLUG00000010450	ENSSLUG00000010456	ENSSLUG00000010466
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00940000164904.b	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	29	ENSGT00940000164904.b	ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a	ENSGT00940000157195.m	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d
European seabass	MODERN SPECIES	21	ENSDLAG00005001690	ENSDLAG00005026473	ENSDLAG00005001685	ENSDLAG00005001559	ENSDLAG00005001422	ENSDLAG00005029032	ENSDLAG00005029701	ENSDLAG00005032055	ZNF207 (ENSDLAG00005026047)	zgc:153240 (ENSDLAG00005029628)	rhot1a (ENSDLAG00005025953)	ENSDLAG00005025922	ENSDLAG00005028667	ENSDLAG00005025917	ENSDLAG00005025913	rln3a (ENSDLAG00005031564) ##22	ENSDLAG00005025902	ENSDLAG00005025893	ENSDLAG00005025885	ENSDLAG00005025869	ENSDLAG00005030145	ENSDLAG00005025854	ENSDLAG00005031880	ENSDLAG00005025835	ENSDLAG00005025834	ENSDLAG00005025832	ENSDLAG00005025830	ENSDLAG00005025822	ENSDLAG00005025815	ENSDLAG00005012738	ENSDLAG00005025827
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005007141	ENSLCRG00005007140	ENSLCRG00005007139	septin9a (ENSLCRG00005007132)	ENSLCRG00005006922	ENSLCRG00005006919	znf207a (ENSLCRG00005006912)	zgc:153240 (ENSLCRG00005006910)	rhot1a (ENSLCRG00005002676)	ENSLCRG00005002537	ENSLCRG00005001296	ENSLCRG00005001287	ENSLCRG00005001284	KHSRP (ENSLCRG00005001222)	rfx1a (ENSLCRG00005000728)	rln3a (ENSLCRG00005000700) ##22	ENSLCRG00005000683	ENSLCRG00005000612	ENSLCRG00005000604	ENSLCRG00005000599	ENSLCRG00005000593	ENSLCRG00005000591	dhps (ENSLCRG00005012350)	NHERF2 (ENSLCRG00005012342)	sstr5 (ENSLCRG00005012341)	ENSLCRG00005012340	ENSLCRG00005012339	ENSLCRG00005012337	ENSLCRG00005012336	spag9a (ENSLCRG00005012110)	ENSLCRG00005012105
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010020134	ENSSAUG00010020132	ENSSAUG00010020131	septin9a (ENSSAUG00010018913)	TNRC6C (ENSSAUG00010018845)	ENSSAUG00010018843	ENSSAUG00010018841	ENSSAUG00010018839	znf207a (ENSSAUG00010018831)	zgc:153240 (ENSSAUG00010018829)	rhot1a (ENSSAUG00010018702)	ADAP2 (ENSSAUG00010018678)	ENSSAUG00010018672	KHSRP (ENSSAUG00010017646)	rfx1a (ENSSAUG00010017627)	rln3a (ENSSAUG00010017622) ##22	ENSSAUG00010017621	ENSSAUG00010017569	dhps (ENSSAUG00010017564)	dhps (ENSSAUG00010017553)	ENSSAUG00010017551	ENSSAUG00010017550	dhps (ENSSAUG00010017548)	NHERF2 (ENSSAUG00010017544)	sstr5 (ENSSAUG00010018344)	ENSSAUG00010018343	ENSSAUG00010018341	ENSSAUG00010018339	ENSSAUG00010018337	foxm1 (ENSSAUG00010018334)	ENSSAUG00010018331
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00730000111690.A.a.a	ENSGT00730000111690.A.b	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Carangaria	ANCESTRAL SPECIES	4	ENSGT00730000111690.A.b	ENSGT00730000111690.A.a.a.o.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000164904.b	ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a.o.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00440000038032	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Tongue sole	MODERN SPECIES	8	ENSCSEG00000013092	ANKRD40 (ENSCSEG00000013083)	luc7l3 (ENSCSEG00000013074)	ENSCSEG00000013035	lgals2a (ENSCSEG00000013016)	gtpbp1 (ENSCSEG00000013001)	sgsm3 (ENSCSEG00000012982)	ELFN2 (ENSCSEG00000012975)	ENSCSEG00000012958	ENSCSEG00000012923	ENSCSEG00000012912	rhot1a (ENSCSEG00000012850)	ENSCSEG00000012838	ENSCSEG00000012827	rfx1a (ENSCSEG00000012797)	rln3a (ENSCSEG00000012788) ##22	zgc:153240 (ENSCSEG00000012781)	ENSCSEG00000012759	TNRC6C (ENSCSEG00000012744)	ENSCSEG00000012736	ENSCSEG00000012727	septin9a (ENSCSEG00000012690)	jpt1b (ENSCSEG00000012678)	ENSCSEG00000012671	NUP85 (ENSCSEG00000012637)	GGA3 (ENSCSEG00000012604)	mrps7 (ENSCSEG00000012596)	mif4gda (ENSCSEG00000012580)	ENSCSEG00000012574	slc25a19 (ENSCSEG00000012562)	ENSCSEG00000012555
Turbot	MODERN SPECIES	10	jpt1b (ENSSMAG00000013368)	ENSSMAG00000013353	ENSSMAG00000013352	ENSSMAG00000013351	septin9a (ENSSMAG00000012833)	ENSSMAG00000012761	ENSSMAG00000012713	ENSSMAG00000012616	ENSSMAG00000012606	znf207a (ENSSMAG00000012468)	zgc:153240 (ENSSMAG00000012435)	RHOT1 (ENSSMAG00000012315)	ENSSMAG00000012215	ENSSMAG00000012166	rfx1a (ENSSMAG00000012149)	ENSSMAG00000012141 ##22	ENSSMAG00000012132	ENSSMAG00000012008	ENSSMAG00000011977	dhps (ENSSMAG00000021752)	dhps (ENSSMAG00000011728)	ENSSMAG00000011703	ENSSMAG00000011719	dhps (ENSSMAG00000011656)	ENSSMAG00000030303	ENSSMAG00000011632	ENSSMAG00000011631	ENSSMAG00000011620	ENSSMAG00000011605	ENSSMAG00000025055	spag9a (ENSSMAG00000011346)
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00730000111690.A.a.a.p	ENSGT00730000111690.A.a.a.o.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000008063.k.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Barramundi perch	MODERN SPECIES	41	ENSLCAG00010013900	jpt1b (ENSLCAG00010013906)	septin9a (ENSLCAG00010013913)	TNRC6C (ENSLCAG00010013926)	ENSLCAG00010013930	ENSLCAG00010013941	ENSLCAG00010013944	znf207a (ENSLCAG00010013952)	zgc:153240 (ENSLCAG00010013954)	rhot1a (ENSLCAG00010013978)	ADAP2 (ENSLCAG00010014022)	ENSLCAG00010014029	ENSLCAG00010014038	KHSRP (ENSLCAG00010014044)	rfx1a (ENSLCAG00010014057)	rln3a (ENSLCAG00010014082) ##22	ENSLCAG00010014085	ENSLCAG00010014132	dhps (ENSLCAG00010014306)	ENSLCAG00010014329	ENSLCAG00010014330	dhps (ENSLCAG00010014333)	ENSLCAG00010014336	NHERF2 (ENSLCAG00010014339)	ENSLCAG00010014343	ENSLCAG00010014345	ENSLCAG00010014347	ENSLCAG00010014349	ENSLCAG00010014353	ENSLCAG00010014360	ENSLCAG00010014366
Seriola	ANCESTRAL SPECIES	26	ENSGT00730000111690.A.a.a.o.b	ENSGT00730000111690.A.a.a.o.a	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00390000013973.B.g.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b.u	ENSGT00950000182933.B.a.b.b.v	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000160560.b.f.a.b.a.a	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a
Yellowtail amberjack	MODERN SPECIES	3245	ENSSLDG00000025610	ENSSLDG00000025611	ENSSLDG00000025612	TNRC6C (ENSSLDG00000025613)	ENSSLDG00000025614	ENSSLDG00000025615	ENSSLDG00000025616	znf207a (ENSSLDG00000025617)	zgc:153240 (ENSSLDG00000025618)	rhot1a (ENSSLDG00000025619)	ADAP2 (ENSSLDG00000025622)	ENSSLDG00000025623	ENSSLDG00000025624	KHSRP (ENSSLDG00000025625)	rfx1a (ENSSLDG00000025626)	rln3a (ENSSLDG00000025627) ##22	ENSSLDG00000025628	ENSSLDG00000025629	ENSSLDG00000025630	ENSSLDG00000025631	dhps (ENSSLDG00000025632)	NHERF2 (ENSSLDG00000025636)	sstr5 (ENSSLDG00000025637)	ENSSLDG00000025638	ENSSLDG00000025639	ENSSLDG00000025640	ENSSLDG00000025641	ENSSLDG00000025642	ENSSLDG00000025643	spag9a (ENSSLDG00000025644)
Greater amberjack	MODERN SPECIES	70	ENSSDUG00000002620	ENSSDUG00000002606	ENSSDUG00000002594	septin9a (ENSSDUG00000002476)	TNRC6C (ENSSDUG00000002366)	ENSSDUG00000002336	ENSSDUG00000002325	znf207a (ENSSDUG00000002295)	zgc:153240 (ENSSDUG00000002278)	rhot1a (ENSSDUG00000002206)	ADAP2 (ENSSDUG00000002190)	ENSSDUG00000002156	ENSSDUG00000002144	KHSRP (ENSSDUG00000002110)	rfx1a (ENSSDUG00000002037)	rln3a (ENSSDUG00000001960) ##22	ENSSDUG00000001938	ENSSDUG00000001767	ENSSDUG00000001741	ENSSDUG00000001728	dhps (ENSSDUG00000001702)	NHERF2 (ENSSDUG00000001661)	sstr5 (ENSSDUG00000001641)	ENSSDUG00000001611	ENSSDUG00000001600	ENSSDUG00000001586	ENSSDUG00000001554	ENSSDUG00000001534	ENSSDUG00000001507	ENSSDUG00000001491	ENSSDUG00000001403
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT00940000157195.m	ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT00940000157195.m	ENSGT00730000111690.A.a.b	ENSGT00730000111690.A.a.a	ENSGT00940000157598	ENSGT01030000234567.B.a.b.a.b.a	ENSGT00730000111057.c	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000162556.D.b.b	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063.k.a	ENSGT00950000182849.B.c.a.b.b	ENSGT00940000165523.b	ENSGT00950000182933.B.a.b.a	ENSGT00950000182933.B.a.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000160560.b.f.a.b.b	ENSGT00940000153496.a.b.b	ENSGT00940000154208.c.a	ENSGT00940000158031.d	ENSGT00390000007792
Climbing perch	MODERN SPECIES	21	jpt1b (ENSATEG00000024679)	septin9a (ENSATEG00000024685)	ENSATEG00000024698	ENSATEG00000028605	ENSATEG00000029804	ENSATEG00000024708	ENSATEG00000024713	znf207a (ENSATEG00000024717)	zgc:153240 (ENSATEG00000024721)	rhot1a (ENSATEG00000024726)	ENSATEG00000024734	ENSATEG00000024736	ENSATEG00000024741	ENSATEG00000024744	rfx1a (ENSATEG00000024750)	ENSATEG00000024753 ##22	ENSATEG00000024755	ENSATEG00000024761	ENSATEG00000024766	ENSATEG00000024767	dhps (ENSATEG00000024768)	ENSATEG00000024771	ENSATEG00000024772	ENSATEG00000024773	ENSATEG00000024774	ENSATEG00000024775	ENSATEG00000024776	spag9a (ENSATEG00000024779)	tob1a (ENSATEG00000024786)	ENSATEG00000024787	ENSATEG00000024790
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000009314	ENSBSLG00000009295	ENSBSLG00000009284	ENSBSLG00000009269	ENSBSLG00000009267	septin9a (ENSBSLG00000009212)	TNRC6C (ENSBSLG00000009172)	ENSBSLG00000009144	znf207a (ENSBSLG00000009087)	zgc:153240 (ENSBSLG00000009024)	rhot1a (ENSBSLG00000007978)	ENSBSLG00000007790	ENSBSLG00000007726	KHSRP (ENSBSLG00000007610)	rfx1a (ENSBSLG00000007448)	rln3a (ENSBSLG00000007422) ##22	ENSBSLG00000007417	ENSBSLG00000007002	ENSBSLG00000006936	ENSBSLG00000006914	dhps (ENSBSLG00000006517)	ENSBSLG00000006149	ENSBSLG00000006145	ENSBSLG00000006143	ENSBSLG00000006141	ENSBSLG00000006139	ENSBSLG00000006136	CACNA1A (ENSBSLG00000005686)	alkbh7 (ENSBSLG00000005542)	gtf2f1 (ENSBSLG00000004891)	ENSBSLG00000004736
Zig-zag eel	MODERN SPECIES	22	NUP85 (ENSMAMG00000023593)	ENSMAMG00000027918	jpt1b (ENSMAMG00000024870)	septin9a (ENSMAMG00000023602)	ENSMAMG00000023609	ENSMAMG00000023610	ENSMAMG00000023611	ENSMAMG00000023613	znf207a (ENSMAMG00000023620)	zgc:153240 (ENSMAMG00000023624)	rhot1a (ENSMAMG00000023627)	ENSMAMG00000027701	ENSMAMG00000023633	ENSMAMG00000023639	rfx1a (ENSMAMG00000023645)	ENSMAMG00000023651 ##22	ENSMAMG00000023654	TNPO2 (ENSMAMG00000023658)	ENSMAMG00000023669	ENSMAMG00000023670	dhps (ENSMAMG00000023673)	ENSMAMG00000023679	ENSMAMG00000023682	ENSMAMG00000025234	ENSMAMG00000023689	ENSMAMG00000023690	ENSMAMG00000023691	tob1a (ENSMAMG00000023693)	ENSMAMG00000023694	ENSMAMG00000023696	ENSMAMG00000023698
Pinecone sodierfish	MODERN SPECIES	22	jpt1b (ENSMMDG00005007001)	ENSMMDG00005006999	ENSMMDG00005006996	septin9a (ENSMMDG00005006031)	TNRC6C (ENSMMDG00005005790)	ENSMMDG00005005755	ENSMMDG00005005744	znf207a (ENSMMDG00005005689)	zgc:153240 (ENSMMDG00005005682)	rhot1a (ENSMMDG00005000761)	ENSMMDG00005000644	ENSMMDG00005000632	ENSMMDG00005000626	KHSRP (ENSMMDG00005000383)	rfx1a (ENSMMDG00005000302)	ENSMMDG00005016355 ##22	ENSMMDG00005016348	ENSMMDG00005016338	dhps (ENSMMDG00005016323)	dhps (ENSMMDG00005016149)	ENSMMDG00005016138	ENSMMDG00005016134	dhps (ENSMMDG00005016126)	NHERF2 (ENSMMDG00005016122)	sstr5 (ENSMMDG00005016114)	ENSMMDG00005016107	ENSMMDG00005016105	ENSMMDG00005016103	ENSMMDG00005016101	spag9a (ENSMMDG00005013693)	tob1a (ENSMMDG00005013678)
Cod	MODERN SPECIES	11	ENSGMOG00000004559	ENSGMOG00000023825	ENSGMOG00000030547	SLC25A19 (ENSGMOG00000010671)	MIF4GD (ENSGMOG00000004643)	MRPS7 (ENSGMOG00000004658)	GGA3 (ENSGMOG00000004669)	NUP85 (ENSGMOG00000004717)	ENSGMOG00000033576	jpt1b (ENSGMOG00000004770)	ENSGMOG00000028415	ENSGMOG00000016164	ENSGMOG00000024748	ENSGMOG00000028659	rfx1a (ENSGMOG00000008963)	ENSGMOG00000008989 ##22	ENSGMOG00000009005	ENSGMOG00000023928	ENSGMOG00000009021	ENSGMOG00000009046	ENSGMOG00000032485	ENSGMOG00000009067	ENSGMOG00000004891	ENSGMOG00000004909	ENSGMOG00000020108	ENSGMOG00000014599	ENSGMOG00000014572	ENSGMOG00000028863	ENSGMOG00000023028	ENSGMOG00000014277	ENSGMOG00000020093
Protacanthopterygii	ANCESTRAL SPECIES	8	ENSGT00940000157333.b	ENSGT00390000000204	ENSGT00950000182895.b.b	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00940000157195.m	ENSGT00940000157598	ENSGT01030000235061	ENSGT00390000013973.B.g.a.a	ENSGT00390000005481	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b	ENSGT00940000155366.b.a.a	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00940000168750	ENSGT00940000155830.e.b
Salmoninae	ANCESTRAL SPECIES		ENSGT00950000182895.a.b.v.k	ENSGT00950000182895.b.b.h	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00940000157195.m	ENSGT00940000157598.p	ENSGT00940000157598.o.a	ENSGT01030000235061	ENSGT00390000013973.B.g.a.a	ENSGT00390000005481.s	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a.d	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b.i.a	ENSGT00940000171402	ENSGT00940000156708.a.b.j	ENSGT00390000006806	ENSGT01100000263497.E.a.a.c.b	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT01100000263497.E.a.a.c.a	ENSGT00950000182849.B.c.a.b.b.d	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b.b	ENSGT00940000155366.b.a.a
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.g.a ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.g.a ##22
Atlantic salmon	MODERN SPECIES	25	GGA3 (ENSSSAG00000093533)	nup85 (ENSSSAG00000065503)	SUMO2 (ENSSSAG00000007811)	jpt1b (ENSSSAG00000120156)	ENSSSAG00000008435	ENSSSAG00000045893	ENSSSAG00000007755	ENSSSAG00000046161	zgc:153240 (ENSSSAG00000046180)	ENSSSAG00000109160	rhot1a (ENSSSAG00000086003)	ENSSSAG00000046377	ENSSSAG00000046332	ENSSSAG00000046236	rfx1a (ENSSSAG00000091311)	ENSSSAG00000114334 ##22	ENSSSAG00000073493	ENSSSAG00000098978	ENSSSAG00000106532	ENSSSAG00000040422	dhps (ENSSSAG00000045270)	ENSSSAG00000119138	ENSSSAG00000107730	ENSSSAG00000087327	ENSSSAG00000092135	ENSSSAG00000042293	ENSSSAG00000065225	ENSSSAG00000063719	ENSSSAG00000113041	proza (ENSSSAG00000004105)	ENSSSAG00000045525
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.g.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES	237							ENSGT00940000157598.p	ENSGT01030000235061	ENSGT00390000013973.B.g.a.b	ENSGT00390000005481.s	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a.d	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a.e	ENSGT01050000244879.a.b.e.k	ENSGT00940000154396.b.a.a.a.g.a ##22
Coho salmon	MODERN SPECIES	1	ENSOKIG00005004140	EMP1 (ENSOKIG00005004123)	GSG1 (ENSOKIG00005004117)	ENSOKIG00005004110	ENSOKIG00005004103	GRIN2B (ENSOKIG00005004091)	ENSOKIG00005004049	ENSOKIG00005004029	ENSOKIG00005004024	zgc:153240 (ENSOKIG00005004008)	rhot1a (ENSOKIG00005002611)	ADAP2 (ENSOKIG00005002327)	ENSOKIG00005002320	KHSRP (ENSOKIG00005002280)	RFX1 (ENSOKIG00005002035)	ENSOKIG00005001989 ##22	ENSOKIG00005001981	ENSOKIG00005001946	ENSOKIG00005018835	ENSOKIG00005018829	wbp2nl (ENSOKIG00005018818)	ENSOKIG00005018795	rrp7a (ENSOKIG00005018776)	POLDIP3 (ENSOKIG00005018750)	fam234b (ENSOKIG00005018738)	ENSOKIG00005018727	ndufa6 (ENSOKIG00005018713)	triobpb (ENSOKIG00005018662)	nol12 (ENSOKIG00005018635)	srebf2 (ENSOKIG00005018550)	ENSOKIG00005018525
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	52	ENSGT00390000000204	ENSGT00950000182895.a.b.v.k	ENSGT00940000164904.b	ENSGT01030000235004	ENSGT00940000157195.m	ENSGT00940000157598.p	ENSGT00940000157598.o.a	ENSGT01030000235061	ENSGT00390000013973.B.g.a.b	ENSGT00390000005481.s	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a.d	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a.g.b.a ##22	ENSGT00940000155603.B	ENSGT00940000156708.a.b.i.a	ENSGT00940000171402	ENSGT00940000156708.a.b.j	ENSGT00390000006806	ENSGT01100000263497.E.a.a.c.b	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT01100000263497.E.a.a.c.a	ENSGT00950000182849.B.c.a.b.b.d	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b.b	ENSGT00940000155366.b.a.a
Oncorhynchus	ANCESTRAL SPECIES	44	ENSGT00390000000204.q	ENSGT00950000182895.a.b.v.k.c.a	ENSGT00940000164904.b	ENSGT00990000213620	ENSGT01030000235004	ENSGT00940000157195.m.h	ENSGT00940000157598.p	ENSGT01030000235061	ENSGT00390000013973.B.g.a.b	ENSGT00390000005481.s	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a.d	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a.e	ENSGT01050000244879.a.b.e.k	ENSGT00940000154396.b.a.a.a.g.b.a ##22	ENSGT00940000154396.b.a.a.a.g.b.b.a ##22	ENSGT00940000155603.B.e	ENSGT00940000156708.a.b.j.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a.c.b	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d
Oncorhynchus_a	ANCESTRAL SPECIES	584															ENSGT01050000244879.a.b.e.l	ENSGT00940000154396.b.a.a.a.g.b.a ##22
Coho salmon	MODERN SPECIES	812															rfx1a (ENSOKIG00005048670)	RLN3 (ENSOKIG00005048650) ##22
Rainbow trout	MODERN SPECIES	4	MRPS7 (ENSOMYG00000032763)	ENSOMYG00000031890	NUP85 (ENSOMYG00000033670)	sumo2 (ENSOMYG00000034243)	jpt1b (ENSOMYG00000032596)	ENSOMYG00000034384	ENSOMYG00000046057	ENSOMYG00000025310	ENSOMYG00000034436	zgc:153240 (ENSOMYG00000034444)	rhot1a (ENSOMYG00000034480)	ENSOMYG00000034542	ENSOMYG00000034616	ENSOMYG00000034657	rfx1a (ENSOMYG00000034707)	rln3a (ENSOMYG00000034796) ##22	ENSOMYG00000034824	ENSOMYG00000034914	ENSOMYG00000034947	ENSOMYG00000069096	dhps (ENSOMYG00000034989)	ENSOMYG00000074218	ENSOMYG00000034887	ENSOMYG00000075043	ENSOMYG00000034904	ENSOMYG00000069229	ENSOMYG00000035055	ENSOMYG00000035060	proza (ENSOMYG00000035089)	ENSOMYG00000035127	iqck (ENSOMYG00000051349)
Salmo	ANCESTRAL SPECIES	103	ENSGT00390000000204.p	ENSGT00950000182895.b.b.h	ENSGT00940000164904.b	ENSGT01030000235004.c	ENSGT00940000157195.m.e	ENSGT00940000167317.d.b	ENSGT00940000157598.o.a	ENSGT01030000235061	ENSGT00390000013973.B.g.a.b	ENSGT00390000005481.s	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a.c.a.a	ENSGT00940000153469.a.a.k.e	ENSGT00940000156051.c.a.d	ENSGT01050000244879.a.b.e	ENSGT00940000154396.b.a.a.a.g.b.a ##22	ENSGT00940000155603.B.d	ENSGT00390000008063.e	ENSGT00950000182849.B.c.a.b.b.d	ENSGT01090000260418	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b.b	ENSGT00940000159473.e	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d.h	ENSGT00940000154311.a.b.cb.a.a.a.c	ENSGT01000000220522	ENSGT00940000155830.e.b.i	ENSGT00390000007091.v.a.a.a.b
Atlantic salmon	MODERN SPECIES	22	SUMO2 (ENSSSAG00000005757)	ENSSSAG00000084392	ENSSSAG00000108256	ENSSSAG00000082746	ENSSSAG00000001037	ENSSSAG00000118062	ENSSSAG00000000948	ENSSSAG00000000943	zgc:153240 (ENSSSAG00000000925)	ENSSSAG00000088970	rhot1a (ENSSSAG00000046570)	ENSSSAG00000042346	ENSSSAG00000042368	ENSSSAG00000042417	rfx1 (ENSSSAG00000042502)	ENSSSAG00000115094 ##22	ENSSSAG00000043192	ENSSSAG00000005630	ENSSSAG00000003464	dhys (ENSSSAG00000087202)	ENSSSAG00000045230	ENSSSAG00000101385	ENSSSAG00000023283	ENSSSAG00000114708	ENSSSAG00000045411	ENSSSAG00000045421	ENSSSAG00000042285	ENSSSAG00000091157	fa10 (ENSSSAG00000045461)	ENSSSAG00000084501	ENSSSAG00000090307
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.g.b.b.a ##22
Salmo	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.g.b.b.a ##22
River trout	MODERN SPECIES	25	GGA3 (ENSSTUG00000043872)	NUP85 (ENSSTUG00000044160)	sumo2b (ENSSTUG00000044286)	jpt1b (ENSSTUG00000044386)	septin9a (ENSSTUG00000044473)	ENSSTUG00000046361	ENSSTUG00000046538	zgc:153240 (ENSSTUG00000046545)	ENSSTUG00000046552	rhot1a (ENSSTUG00000046644)	ADAP2 (ENSSTUG00000047599)	ENSSTUG00000047605	KHSRP (ENSSTUG00000047614)	rfx1a (ENSSTUG00000047651)	ENSSTUG00000047756	ENSSTUG00000047758 ##22	ENSSTUG00000047765	ENSSTUG00000047807	ENSSTUG00000047862	ENSSTUG00000047873	dhps (ENSSTUG00000047880)	ENSSTUG00000047915	ENSSTUG00000047933	ENSSTUG00000047937	sstr5 (ENSSTUG00000047942)	ENSSTUG00000047953	GPR139 (ENSSTUG00000047968)	ENSSTUG00000047982	proza (ENSSTUG00000047987)	gprc5ba (ENSSTUG00000048006)	iqck (ENSSTUG00000048013)
Oncorhynchus	ANCESTRAL SPECIES	44	ENSGT00950000182895.a.b.v.k.c.a	ENSGT00940000164904.b	ENSGT00990000213620	ENSGT01030000235004	ENSGT00940000157195.m.h	ENSGT00940000157598.p	ENSGT01030000235061	ENSGT00390000013973.B.g.a.b	ENSGT00390000005481.s	ENSGT00940000155641.g.a	ENSGT00940000156498.g.a.d	ENSGT00940000153469.a.a.k	ENSGT00940000156051.c.a.e	ENSGT01050000244879.a.b.e.k	ENSGT00940000154396.b.a.a.a.g.b.a ##22	ENSGT00940000154396.b.a.a.a.g.b.b.a ##22	ENSGT00940000155603.B.e	ENSGT00940000156708.a.b.j.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a.c.b	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b.c.a	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00940000168750
Oncorhynchus_a	ANCESTRAL SPECIES	98																ENSGT00940000154396.b.a.a.a.g.b.b.a ##22	ENSGT00940000155603.B.e	ENSGT00940000156708.a.b.j.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a.c.a	ENSGT01100000263497.E.a.a.c.b	ENSGT00390000008063	ENSGT00950000182849.B.c.a.b.b.c.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a	ENSGT00940000165523.b.b	ENSGT00940000155366.b.a.a	ENSGT00940000159473	ENSGT00940000154505.A.d	ENSGT00950000182961.b.d	ENSGT00940000168750
Coho salmon	MODERN SPECIES	779																rln3a (ENSOKIG00005022702) ##22	ENSOKIG00005022608
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.g.b.b.b ##22
Salmo	ANCESTRAL SPECIES	211											ENSGT00940000157195.m.f	ENSGT00940000167317.d.a	ENSGT00940000156498.g.a.c.b	ENSGT00940000153469.a.a.k.f	ENSGT00940000156051.c.a.c	ENSGT00940000154396.b.a.a.a.g.b.b.b ##22	ENSGT00940000155603.B.c	ENSGT00940000156708.a.b.i.a	ENSGT00940000156708.a.b.i.b	ENSGT00390000006806	ENSGT01100000263497.E.a.a.c.b	ENSGT01100000263497.E.a.a.c.a	ENSGT00390000008063.f
River trout	MODERN SPECIES		GGA3 (ENSSTUG00000009742)	NUP85 (ENSSTUG00000009936)	sumo2b (ENSSTUG00000011137)	jpt1b (ENSSTUG00000011207)	ENSSTUG00000011234	septin9a (ENSSTUG00000011357)	ENSSTUG00000011991	ENSSTUG00000012024	ENSSTUG00000012254	zgc:153240 (ENSSTUG00000000080)	rhot1a (ENSSTUG00000000088)	ENSSTUG00000000242	ENSSTUG00000000273	KHSRP (ENSSTUG00000000285)	rfx1a (ENSSTUG00000000321)	rln3a (ENSSTUG00000000335) ##22	ENSSTUG00000000341	ENSSTUG00000000364	ENSSTUG00000000413	ENSSTUG00000000438	dhps (ENSSTUG00000000450)	NHERF2 (ENSSTUG00000000505)	ENSSTUG00000000528	ENSSTUG00000000535	ENSSTUG00000000541	ENSSTUG00000000543	ENSSTUG00000000549	ENSSTUG00000000556	GPR139 (ENSSTUG00000000566)	proza (ENSSTUG00000000578)	gprc5ba (ENSSTUG00000000599)
Oncorhynchus	ANCESTRAL SPECIES	272														ENSGT00940000156051.c.a.f	ENSGT01050000244879.a.b.e.l	ENSGT00940000154396.b.a.a.a.g.b.b.b ##22	ENSGT00940000155603.B.f
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000071972	noxo1a (ENSOMYG00000019561)	GID4 (ENSOMYG00000053419)	ENSOMYG00000061879	drc3 (ENSOMYG00000062666)	TOM1L2 (ENSOMYG00000019472)	srebf1 (ENSOMYG00000042611)	ENSOMYG00000065184	ENSOMYG00000011212	zgc:153240 (ENSOMYG00000011230)	rhot1a (ENSOMYG00000010565)	ENSOMYG00000010291	ENSOMYG00000010219	ENSOMYG00000063839	rfx1a (ENSOMYG00000010127)	ENSOMYG00000010049 ##22	ENSOMYG00000010019	ENSOMYG00000011315	ENSOMYG00000011359	ENSOMYG00000052432	dhps (ENSOMYG00000011391)	ENSOMYG00000069098	ENSOMYG00000055536	ENSOMYG00000065482	ENSOMYG00000072837	ENSOMYG00000050121	ENSOMYG00000035069	proza (ENSOMYG00000069843)	ENSOMYG00000028774	iqck (ENSOMYG00000029764)	ENSOMYG00000060946
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.h ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.h ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.a.a.h ##22
Coho salmon	MODERN SPECIES	1015																ENSOKIG00005043121 ##22	ENSOKIG00005043171	ENSOKIG00005043178
Huchen	DUPLICATION
Huchen	MODERN SPECIES	308						septin9a (ENSHHUG00000028088)	TNRC6C (ENSHHUG00000028004)	ENSHHUG00000028001	ENSHHUG00000027998	zgc:153240 (ENSHHUG00000027990)	rhot1a (ENSHHUG00000027712)	ENSHHUG00000027686	ENSHHUG00000027676	KHSRP (ENSHHUG00000027630)	rfx1a (ENSHHUG00000027619)	rln3a (ENSHHUG00000027616) ##22	ENSHHUG00000027614	ENSHHUG00000027537	ENSHHUG00000027528	ENSHHUG00000027517	dhps (ENSHHUG00000027508)	ENSHHUG00000027501	NHERF2 (ENSHHUG00000027493)	ENSHHUG00000027491	ENSHHUG00000027490	sstr5 (ENSHHUG00000027489)	ENSHHUG00000027487	GPR139 (ENSHHUG00000027484)	proza (ENSHHUG00000027483)	gprc5ba (ENSHHUG00000027482)	iqck (ENSHHUG00000027476)
Huchen	MODERN SPECIES	2266										rhot1a (ENSHHUG00000048123)	ENSHHUG00000048119	ENSHHUG00000048117	ENSHHUG00000048108	KHSRP (ENSHHUG00000048081)	rfx1a (ENSHHUG00000048070)	rln3a (ENSHHUG00000048069) ##22	ENSHHUG00000048051	ENSHHUG00000048011	ENSHHUG00000047996	ENSHHUG00000047990	dhps (ENSHHUG00000047984)	ENSHHUG00000047936
Northern pike	MODERN SPECIES	10	jpt1b (ENSELUG00000007880)	ENSELUG00000009521	ENSELUG00000033718	ENSELUG00000009533	ENSELUG00000029208	septin9a (ENSELUG00000008019)	TNRC6C (ENSELUG00000008149)	ENSELUG00000008190	zgc:153240 (ENSELUG00000008217)	rhot1a (ENSELUG00000008308)	ADAP2 (ENSELUG00000008375)	ENSELUG00000008399	KHSRP (ENSELUG00000008445)	ENSELUG00000032366	rfx1a (ENSELUG00000008531)	rln3a (ENSELUG00000008560) ##22	ENSELUG00000008601	ENSELUG00000008680	rasd4 (ENSELUG00000008706)	PRPSAP1 (ENSELUG00000008735)	CYGB (ENSELUG00000008813)	ENSELUG00000008950	SPHK1 (ENSELUG00000008992)	AANAT (ENSELUG00000009012)	ENSELUG00000009065	ddx5 (ENSELUG00000009107)	smurf2 (ENSELUG00000009222)	kpna2 (ENSELUG00000009253)	BPTF (ENSELUG00000009441)	grb2b (ENSELUG00000009534)	ENSELUG00000001614
Osteoglossocephalai	ANCESTRAL SPECIES	312															ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000167543	ENSGT00940000159473	ENSGT00950000182961.b.c	ENSGT00500000044955
Clupeocephala	ANCESTRAL SPECIES	97															ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT01030000234810	ENSGT00940000159473	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00940000166659	ENSGT00390000010434.b
Euteleosteomorpha	ANCESTRAL SPECIES	68		ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000176048	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a
Protacanthopterygii	ANCESTRAL SPECIES	67	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b.c	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000176048	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a
Salmoninae	ANCESTRAL SPECIES	172	ENSGT01100000263525.a.b.a.a	ENSGT00940000160377.g.a	ENSGT00390000007688.b	ENSGT00950000183135.A.b.q.a	ENSGT00990000206034	ENSGT00950000183135.A.b.r	ENSGT00390000009595.b.g	ENSGT00390000009595.b.h.a.a	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.c	ENSGT00940000158786	ENSGT00940000156051.c.b.c	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.d	ENSGT00950000182849.B.c.a.a.c	ENSGT00510000047513.h	ENSGT00950000183139.C.i.b.a	ENSGT00940000167012.d	ENSGT00940000165523.a	ENSGT00950000182894.B.i.a.b	ENSGT00940000155366.b.a.b	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.b	ENSGT00390000015287.a.a
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000166522.b	ENSGT00530000063936.a.a	ENSGT00940000166147.f.a	ENSGT00390000018759.l	ENSGT00950000182886.a.a.b.s.c.a	ENSGT00940000164566.a	ENSGT00990000204179.b.a.b.a.a	ENSGT00390000009595.b.h.a.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.c	ENSGT00940000158786.mb	ENSGT00940000156051.c.b.c	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.c	ENSGT00510000047513.h	ENSGT00950000183139.C.i.b.a	ENSGT00940000167012.d	ENSGT00940000165523.a	ENSGT00950000182894.B.i.a.b	ENSGT00940000155366.b.a.b	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00940000166659	ENSGT00390000010434.b.c.b
Oncorhynchus	ANCESTRAL SPECIES	68	ENSGT00530000063936.a.a	ENSGT00940000166147.f.a	ENSGT00390000018759.l	ENSGT00950000182886.a.a.b.s.c.a	ENSGT00940000164566.a	ENSGT00990000204179.b.a.b.a.a	ENSGT00390000009595.b.h.a.b	ENSGT00390000013732	ENSGT00390000011740.e.a	ENSGT00940000161004.c	ENSGT00940000158786.lb	ENSGT00940000158786.mb	ENSGT00940000156051.c.b.c	ENSGT00390000011987.g	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.d	ENSGT00940000162996.u.b.b.a	ENSGT00510000047513.h	ENSGT00950000183139.C.i.b.a.a	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.e	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b.c.a	ENSGT00390000015287.b.c.b	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00940000166659	ENSGT00390000010434.b.c.b
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000077591	ENSOMYG00000058636	nanos3 (ENSOMYG00000056380)	nanos3 (ENSOMYG00000054328)	nanos3 (ENSOMYG00000067935)	ENSOMYG00000005126	ENSOMYG00000058002	CC2D1A (ENSOMYG00000048915)	mri1 (ENSOMYG00000076834)	L10K (ENSOMYG00000058705)	ENSOMYG00000058360	ENSOMYG00000050175	khsrp (ENSOMYG00000005087)	DCAF15 (ENSOMYG00000059287)	ENSOMYG00000048738	rln3b (ENSOMYG00000073855) ##22	ENSOMYG00000076576	ENSOMYG00000049505	ENSOMYG00000073673	ENSOMYG00000077569	ENSOMYG00000052314	ENSOMYG00000048917	ENSOMYG00000075416	ENSOMYG00000063838	ENSOMYG00000071858	ENSOMYG00000075393	THUMPD1 (ENSOMYG00000056954)	ENSOMYG00000067117	ENSOMYG00000049784	ENSOMYG00000071089	ENSOMYG00000072050
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000075563	ENSOMYG00000067018	nanos3 (ENSOMYG00000076039)	nanos3 (ENSOMYG00000067904)	ENSOMYG00000034206	ENSOMYG00000054937	mri1 (ENSOMYG00000065715)	L10K (ENSOMYG00000005223)	ENSOMYG00000076202	ENSOMYG00000053619	ENSOMYG00000068107	ENSOMYG00000072694	khsrp (ENSOMYG00000060752)	DCAF15 (ENSOMYG00000060337)	ENSOMYG00000053627	rln3b (ENSOMYG00000035854) ##22	ENSOMYG00000009981	ENSOMYG00000058288	ENSOMYG00000066790	ENSOMYG00000058941	ENSOMYG00000049380	ENSOMYG00000069404	ENSOMYG00000056379	ENSOMYG00000007118	ENSOMYG00000065745	gprc5bb (ENSOMYG00000006913)	ENSOMYG00000038480	exosc1 (ENSOMYG00000056293)	pgam1b (ENSOMYG00000006701)	cdc25d (ENSOMYG00000061294)	pi4k2a (ENSOMYG00000063390)
Oncorhynchus_a	ANCESTRAL SPECIES	165										ENSGT00390000011740.e.a	ENSGT00940000161004.c	ENSGT00940000158786.lb	ENSGT00940000156051.c.b.c	ENSGT00390000011987.g	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.c.d	ENSGT00950000183139.C.i.b.a.b	ENSGT00940000167012.d	ENSGT00940000165523.a	ENSGT00940000176048	ENSGT00950000182894.B.j	ENSGT00940000155366.b.a.b.f	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b.c.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	282											ENSOKIG00005022078	ENSOKIG00005022065	KHSRP (ENSOKIG00005022042)	DCAF15 (ENSOKIG00005021958)	ENSOKIG00005021948	ENSOKIG00005021943 ##22	ENSOKIG00005021830
Coho salmon	MODERN SPECIES	30	ENSOKIG00005049548	ENSOKIG00005049538	CARM1 (ENSOKIG00005049288)	ENSOKIG00005049243	nanos3 (ENSOKIG00005049238)	ENSOKIG00005049227	CC2D1A (ENSOKIG00005049204)	mri1 (ENSOKIG00005049192)	zgc:136864 (ENSOKIG00005049185)	ENSOKIG00005049183	ENSOKIG00005049158	khsrp (ENSOKIG00005049126)	DCAF15 (ENSOKIG00005049117)	ENSOKIG00005049116	RFX1 (ENSOKIG00005049109)	rln3b (ENSOKIG00005049103) ##22	TNPO2 (ENSOKIG00005049074)	ENSOKIG00005049048	ENSOKIG00005049043	ENSOKIG00005048949	TSC2 (ENSOKIG00005042605)	ENSOKIG00005041722	ENSOKIG00005041659	ENSOKIG00005041632	tekt4 (ENSOKIG00005041620)	ENSOKIG00005041593	ENSOKIG00005041571	gprc5bb (ENSOKIG00005041558)	ENSOKIG00005041529	ENSOKIG00005041513	exosc1 (ENSOKIG00005041419)
Chinook salmon	MODERN SPECIES	29	pdcb (ENSOTSG00005027644)	ptgs2b (ENSOTSG00005025813)	ENSOTSG00005025794	ENSOTSG00005025791	ivns1abpa (ENSOTSG00005025576)	ENSOTSG00005025575	TRMT1L (ENSOTSG00005025574)	niban1a (ENSOTSG00005025549)	kifap3a (ENSOTSG00005025515)	ntmt2 (ENSOTSG00005025507)	gorab (ENSOTSG00005025505)	prrx1b (ENSOTSG00005025504)	ENSOTSG00005025503	ENSOTSG00005025502	mrpl46 (ENSOTSG00005025501)	rln3b (ENSOTSG00005025500) ##22	ENSOTSG00005025499	prpf38a (ENSOTSG00005025498)	ENSOTSG00005025497	ENSOTSG00005025496	ENSOTSG00005025495	ENSOTSG00005023224	si:ch73-185c24.2 (ENSOTSG00005025494)	TMEM125 (ENSOTSG00005023213)	cfap144 (ENSOTSG00005024993)	ebna1bp2 (ENSOTSG00005024992)	ENSOTSG00005024990	dmrt2b (ENSOTSG00005024989)	ENSOTSG00005024986	ENSOTSG00005023264	usp1 (ENSOTSG00005023261)
Salmo	ANCESTRAL SPECIES	143	ENSGT00950000183135.A.b.q.b.a	ENSGT00950000183135.A.b.r.d	ENSGT00990000206034	ENSGT00950000183135.A.b.q.a	ENSGT00390000009595.b.g.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004.d	ENSGT00940000161004.c	ENSGT00940000158786.mb	ENSGT00940000156051.c.b.c.b	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b.c.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.c.a	ENSGT00510000047513.g	ENSGT00950000183139.C.i.b.b.a.a
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000120073	ENSSSAG00000005987	nanos3 (ENSSSAG00000005994)	nanos3 (ENSSSAG00000091901)	ENSSSAG00000025650	nanos3 (ENSSSAG00000101547)	ENSSSAG00000000244	ENSSSAG00000094029	mri1 (ENSSSAG00000093663)	ENSSSAG00000005297	ENSSSAG00000113524	ENSSSAG00000040421	khsrp (ENSSSAG00000111558)	DCAF15 (ENSSSAG00000119795)	ENSSSAG00000114259	rln3b (ENSSSAG00000009959) ##22	ENSSSAG00000107317	ENSSSAG00000094752	ENSSSAG00000096309	ENSSSAG00000083657	NTHL1 (ENSSSAG00000097563)	ENSSSAG00000096854	ENSSSAG00000106567	ENSSSAG00000004221	tekt4 (ENSSSAG00000103017)	ENSSSAG00000117368	tekt4 (ENSSSAG00000101639)	ENSSSAG00000062557	ENSSSAG00000101938	ENSSSAG00000000516	si:ch211-202h22.9 (ENSSSAG00000008178)
Northern pike	MODERN SPECIES	8	ENSELUG00000015827	ENSELUG00000025639	ENSELUG00000015473	ENSELUG00000027126	ENSELUG00000026523	CARM1 (ENSELUG00000015993)	nanos3 (ENSELUG00000016082)	CC2D1A (ENSELUG00000016141)	mri1 (ENSELUG00000016174)	zgc:136864 (ENSELUG00000016187)	ENSELUG00000029327	ENSELUG00000016247	khsrp (ENSELUG00000016310)	DCAF15 (ENSELUG00000016361)	RFX1 (ENSELUG00000001108)	rln3b (ENSELUG00000027504) ##22	TNPO2 (ENSELUG00000016542)	NHERF2 (ENSELUG00000016566)	ENSELUG00000016582	ENSELUG00000016626	ENSELUG00000016602	NTHL1 (ENSELUG00000016661)	TSC2 (ENSELUG00000016788)	ENSELUG00000017103	ENSELUG00000017164	tekt4 (ENSELUG00000017199)	ENSELUG00000017204	ENSELUG00000028826	ENSELUG00000028858	ENSELUG00000017248	litaf (ENSELUG00000017282)
Acanthomorphata	ANCESTRAL SPECIES	39												ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000176048	ENSGT00940000167543	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000176048	ENSGT00940000167543	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Tetraodontidae	ANCESTRAL SPECIES	33	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01080000257510	ENSGT00390000013298
Tetraodon	MODERN SPECIES	10	pcyt2 (ENSTNIG00000014056)	gnav1 (ENSTNIG00000014057)	npb (ENSTNIG00000014058)	sgsh (ENSTNIG00000014059)	slc26a11 (ENSTNIG00000014060)	ENSTNIG00000014061	ENSTNIG00000014062	nanos3 (ENSTNIG00000014063)	CC2D1A (ENSTNIG00000014064)	mri1 (ENSTNIG00000014065)	ENSTNIG00000000780	ENSTNIG00000014066	khsrp (ENSTNIG00000014067)	DCAF15 (ENSTNIG00000014068)	RFX1 (ENSTNIG00000014069)	rln3b (ENSTNIG00000014070) ##22	TNPO2 (ENSTNIG00000014071)	NHERF2 (ENSTNIG00000014072)	NTHL1 (ENSTNIG00000014073)	TSC2 (ENSTNIG00000014074)	ENSTNIG00000014075	ENSTNIG00000014076	si:ch211-202h22.8 (ENSTNIG00000014077)	gprc5bb (ENSTNIG00000014078)	ENSTNIG00000001675	exosc1 (ENSTNIG00000014079)	ENSTNIG00000014080	pi4k2a (ENSTNIG00000014081)	zfyve27 (ENSTNIG00000014082)	crtac1a (ENSTNIG00000014083)	ENSTNIG00000004459
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b
Ballan wrasse	MODERN SPECIES	662			ENSLBEG00000004760	ENSLBEG00000004804	ENSLBEG00000004837	nanos3 (ENSLBEG00000004936)	CC2D1A (ENSLBEG00000004956)	mri1 (ENSLBEG00000004998)	zgc:136864 (ENSLBEG00000005030)	ENSLBEG00000005056	ENSLBEG00000005125	ENSLBEG00000005167	khsrp (ENSLBEG00000005191)	DCAF15 (ENSLBEG00000005227)	RFX1 (ENSLBEG00000005257)	rln3b (ENSLBEG00000005282) ##22	TNPO2 (ENSLBEG00000005301)	ENSLBEG00000005386	NTHL1 (ENSLBEG00000005413)	TSC2 (ENSLBEG00000005560)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183145.B.a.a.b.e.a	ENSGT00940000156038.a.a.d.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Lumpfish	MODERN SPECIES		pcyt2 (ENSCLMG00005014576)	gnav1 (ENSCLMG00005014568)	npb (ENSCLMG00005014567)	sgsh (ENSCLMG00005014565)	slc26a11 (ENSCLMG00005014361)	ENSCLMG00005014360	ENSCLMG00005014359	CC2D1A (ENSCLMG00005014346)	mri1 (ENSCLMG00005014341)	zgc:136864 (ENSCLMG00005014340)	ENSCLMG00005014339	ENSCLMG00005013535	khsrp (ENSCLMG00005013530)	DCAF15 (ENSCLMG00005013512)	RFX1 (ENSCLMG00005013511)	rln3b (ENSCLMG00005013510) ##22	TNPO2 (ENSCLMG00005013504)	ENSCLMG00005013490	NTHL1 (ENSCLMG00005013479)	TSC2 (ENSCLMG00005009758)	ENSCLMG00005009707	ENSCLMG00005009694	si:ch211-202h22.8 (ENSCLMG00005009691)	gprc5bb (ENSCLMG00005009689)	ENSCLMG00005009688	exosc1 (ENSCLMG00005009687)	ENSCLMG00005009684	pi4k2a (ENSCLMG00005009679)	ENSCLMG00005009678	ENSCLMG00005009677	ENSCLMG00005009676
Stickleback	MODERN SPECIES	4	gnav1 (ENSGACG00000019015)	npb (ENSGACG00000019013)	sgsh (ENSGACG00000019010)	slc26a11 (ENSGACG00000019006)	ENSGACG00000019004	nanos3 (ENSGACG00000019003)	ENSGACG00000019002	CC2D1A (ENSGACG00000018999)	mri1 (ENSGACG00000018995)	zgc:136864 (ENSGACG00000018994)	ENSGACG00000018993	ENSGACG00000018992	khsrp (ENSGACG00000018990)	ENSGACG00000018989	RFX1 (ENSGACG00000018987)	rln3b (ENSGACG00000018985) ##22	TNPO2 (ENSGACG00000018968)	ENSGACG00000018966	NTHL1 (ENSGACG00000018961)	TSC2 (ENSGACG00000018952)	ENSGACG00000018946	ENSGACG00000018944	ENSGACG00000018941	gprc5bb (ENSGACG00000018939)	ENSGACG00000018937	exosc1 (ENSGACG00000018936)	ENSGACG00000018928	pi4k2a (ENSGACG00000018925)	zfyve27 (ENSGACG00000018920)	golga7ba (ENSGACG00000018915)	crtac1a (ENSGACG00000018906)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Channel bull blenny	MODERN SPECIES		npb (ENSCGOG00000002012)	sgsh (ENSCGOG00000001955)	slc26a11 (ENSCGOG00000001722)	ENSCGOG00000001690	ENSCGOG00000001688	ENSCGOG00000001687	ENSCGOG00000001685	CC2D1A (ENSCGOG00000001637)	mri1 (ENSCGOG00000001616)	zgc:136864 (ENSCGOG00000001596)	ENSCGOG00000001581	ENSCGOG00000001549	khsrp (ENSCGOG00000001537)	DCAF15 (ENSCGOG00000001536)	RFX1 (ENSCGOG00000001533)	rln3b (ENSCGOG00000001529) ##22	TNPO2 (ENSCGOG00000001070)	ENSCGOG00000001050	ENSCGOG00000001048	NTHL1 (ENSCGOG00000001046)	TSC2 (ENSCGOG00000000669)	ENSCGOG00000000436	ENSCGOG00000000431	si:ch211-202h22.8 (ENSCGOG00000000427)	gprc5bb (ENSCGOG00000000426)	ENSCGOG00000000423	exosc1 (ENSCGOG00000000415)	ENSCGOG00000000399	pi4k2a (ENSCGOG00000000347)	ENSCGOG00000000340	ENSCGOG00000000338
Pike perch	MODERN SPECIES	8	sgsh (ENSSLUG00000011945)	slc26a11 (ENSSLUG00000011974)	ENSSLUG00000012234	ENSSLUG00000012239	ENSSLUG00000012243	ENSSLUG00000012248	ENSSLUG00000012252	nanos3 (ENSSLUG00000012257)	CC2D1A (ENSSLUG00000012303)	mri1 (ENSSLUG00000012957)	ENSSLUG00000012981	ENSSLUG00000013195	khsrp (ENSSLUG00000013199)	DCAF15 (ENSSLUG00000013203)	RFX1 (ENSSLUG00000013210)	rln3b (ENSSLUG00000013218) ##22	TNPO2 (ENSSLUG00000013231)	ENSSLUG00000013256	NHERF2 (ENSSLUG00000013266)	NTHL1 (ENSSLUG00000013306)	TSC2 (ENSSLUG00000013501)	ENSSLUG00000014303	ENSSLUG00000000103	ENSSLUG00000000109	ENSSLUG00000000118	ENSSLUG00000000122	si:ch211-202h22.8 (ENSSLUG00000000125)	gprc5bb (ENSSLUG00000000130)	ENSSLUG00000000134	exosc1 (ENSSLUG00000000138)	ENSSLUG00000000141
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b	ENSGT00390000013298
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b	ENSGT00390000013298
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005018173	CUL7 (ENSLCRG00005018184)	ENSLCRG00005018562	ENSLCRG00005018569	ENSLCRG00005018571	ENSLCRG00005018575	nanos3 (ENSLCRG00005018578)	ENSLCRG00005018583	mri1 (ENSLCRG00005018589)	zgc:136864 (ENSLCRG00005018591)	ENSLCRG00005018593	ENSLCRG00005018602	khsrp (ENSLCRG00005018659)	DCAF15 (ENSLCRG00005018661)	RFX1 (ENSLCRG00005018665)	rln3b (ENSLCRG00005018676) ##22	TNPO2 (ENSLCRG00005018678)	ENSLCRG00005018718	NTHL1 (ENSLCRG00005018720)	TSC2 (ENSLCRG00005018730)	ENSLCRG00005018854	ENSLCRG00005018859	si:ch211-202h22.8 (ENSLCRG00005000211)	ENSLCRG00005000226	gprc5bb (ENSLCRG00005000231)	ENSLCRG00005000236	exosc1 (ENSLCRG00005000252)	ENSLCRG00005000264	pi4k2a (ENSLCRG00005000270)	ENSLCRG00005000279	ENSLCRG00005000285
Gilthead seabream	MODERN SPECIES		npb (ENSSAUG00010001011)	sgsh (ENSSAUG00010001010)	slc26a11 (ENSSAUG00010001004)	ENSSAUG00010001000	ENSSAUG00010000997	ENSSAUG00010000995	nanos3 (ENSSAUG00010000994)	CC2D1A (ENSSAUG00010000990)	mri1 (ENSSAUG00010000989)	zgc:136864 (ENSSAUG00010000988)	ENSSAUG00010000987	ENSSAUG00010000972	khsrp (ENSSAUG00010000961)	DCAF15 (ENSSAUG00010000956)	RFX1 (ENSSAUG00010000722)	rln3b (ENSSAUG00010000707) ##22	NHERF2 (ENSSAUG00010000692)	NTHL1 (ENSSAUG00010000688)	ENSSAUG00010000684	TSC2 (ENSSAUG00010000535)	ENSSAUG00010000455	ENSSAUG00010000443	si:ch211-202h22.8 (ENSSAUG00010000435)	gprc5bb (ENSSAUG00010000431)	ENSSAUG00010000428	exosc1 (ENSSAUG00010000416)	ENSSAUG00010000406	pi4k2a (ENSSAUG00010000394)	ENSSAUG00010000386	ENSSAUG00010000382	zfyve27 (ENSSAUG00010000371)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510
Anabantaria	ANCESTRAL SPECIES	1	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.E	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.E	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Climbing perch	MODERN SPECIES		sgsh (ENSATEG00000019621)	slc26a11 (ENSATEG00000019534)	ENSATEG00000019521	ENSATEG00000019502	ENSATEG00000026831	ENSATEG00000025501	nanos3 (ENSATEG00000027158)	CC2D1A (ENSATEG00000019431)	mri1 (ENSATEG00000019410)	zgc:136864 (ENSATEG00000025205)	ENSATEG00000019388	ENSATEG00000019353	khsrp (ENSATEG00000019332)	DCAF15 (ENSATEG00000019319)	ENSATEG00000019287	rln3b (ENSATEG00000019231) ##22	ENSATEG00000019171	ENSATEG00000019157	NTHL1 (ENSATEG00000019126)	ENSATEG00000019014	ENSATEG00000018872	ENSATEG00000018855	ENSATEG00000018835	ENSATEG00000018761	ENSATEG00000026213	gprc5bb (ENSATEG00000018727)	ENSATEG00000018717	exosc1 (ENSATEG00000029576)	ENSATEG00000018664	pi4k2a (ENSATEG00000018646)	ENSATEG00000018623
Zig-zag eel	MODERN SPECIES		sgsh (ENSMAMG00000011541)	slc26a11 (ENSMAMG00000011585)	ENSMAMG00000028201	ENSMAMG00000028311	ENSMAMG00000011614	ENSMAMG00000011634	ENSMAMG00000026081	ENSMAMG00000011670	ENSMAMG00000011686	ENSMAMG00000011710	ENSMAMG00000011719	ENSMAMG00000011734	ENSMAMG00000011746	DCAF15 (ENSMAMG00000011813)	ENSMAMG00000011826	rln3b (ENSMAMG00000011852) ##22	ENSMAMG00000011862	ENSMAMG00000011928	NTHL1 (ENSMAMG00000011946)	ENSMAMG00000011960	ENSMAMG00000012069	ENSMAMG00000012152	si:ch211-202h22.8 (ENSMAMG00000012162)	gprc5bb (ENSMAMG00000012178)	ENSMAMG00000026091	exosc1 (ENSMAMG00000012200)	ENSMAMG00000012220	pi4k2a (ENSMAMG00000012224)	ENSMAMG00000012261	zfyve27 (ENSMAMG00000012278)	golga7ba (ENSMAMG00000012305)
Carangaria	ANCESTRAL SPECIES		ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b
Carangaria_A	ANCESTRAL SPECIES	24	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b
Seriola	ANCESTRAL SPECIES	11	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a	ENSGT00950000183145.B.a.a.b.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00950000182849.B.d	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b
Greater amberjack	MODERN SPECIES	84	slc26a11 (ENSSDUG00000001983)	ENSSDUG00000002038	ENSSDUG00000002044	ENSSDUG00000002055	ENSSDUG00000002066	ENSSDUG00000002094	nanos3 (ENSSDUG00000002131)	CC2D1A (ENSSDUG00000002160)	mri1 (ENSSDUG00000002275)	zgc:136864 (ENSSDUG00000002291)	ENSSDUG00000002326	ENSSDUG00000002348	khsrp (ENSSDUG00000002390)	DCAF15 (ENSSDUG00000002448)	RFX1 (ENSSDUG00000002511)	rln3b (ENSSDUG00000002552) ##22	TNPO2 (ENSSDUG00000002607)	NHERF2 (ENSSDUG00000002671)	ENSSDUG00000002684	NTHL1 (ENSSDUG00000002707)	TSC2 (ENSSDUG00000002733)	ENSSDUG00000002829	ENSSDUG00000002933	si:ch211-202h22.8 (ENSSDUG00000002946)	gprc5bb (ENSSDUG00000002956)	ENSSDUG00000002977	exosc1 (ENSSDUG00000002993)	ENSSDUG00000003026	pi4k2a (ENSSDUG00000003046)	ENSSDUG00000003075	ENSSDUG00000003088
Yellowtail amberjack	MODERN SPECIES	3041	sgsh (ENSSLDG00000012536)	slc26a11 (ENSSLDG00000012566)	ENSSLDG00000012608	ENSSLDG00000012617	ENSSLDG00000012628	ENSSLDG00000012639	nanos3 (ENSSLDG00000012674)	CC2D1A (ENSSLDG00000012710)	mri1 (ENSSLDG00000012900)	zgc:136864 (ENSSLDG00000012924)	ENSSLDG00000012935	ENSSLDG00000012965	khsrp (ENSSLDG00000012993)	DCAF15 (ENSSLDG00000013026)	RFX1 (ENSSLDG00000013063)	rln3b (ENSSLDG00000013091) ##22	TNPO2 (ENSSLDG00000013107)	NHERF2 (ENSSLDG00000013152)	NTHL1 (ENSSLDG00000013160)	TSC2 (ENSSLDG00000013236)
Barramundi perch	MODERN SPECIES	123	slc26a11 (ENSLCAG00010005458)	ENSLCAG00010005489	ENSLCAG00010005494	ENSLCAG00010005497	ENSLCAG00010005499	ENSLCAG00010005503	nanos3 (ENSLCAG00010005507)	CC2D1A (ENSLCAG00010005511)	mri1 (ENSLCAG00010005517)	zgc:136864 (ENSLCAG00010005524)	ENSLCAG00010005525	ENSLCAG00010005528	khsrp (ENSLCAG00010005531)	DCAF15 (ENSLCAG00010005539)	RFX1 (ENSLCAG00010005546)	rln3b (ENSLCAG00010005555) ##22	TNPO2 (ENSLCAG00010005579)	ENSLCAG00010005697	ENSLCAG00010005699	NTHL1 (ENSLCAG00010005701)	TSC2 (ENSLCAG00010005725)	ENSLCAG00010005790	si:ch211-202h22.8 (ENSLCAG00010005793)	gprc5bb (ENSLCAG00010005800)	ENSLCAG00010005806	ENSLCAG00010005821	pi4k2a (ENSLCAG00010005882)	ENSLCAG00010005928	zfyve27 (ENSLCAG00010005935)	golga7ba (ENSLCAG00010005949)	crtac1a (ENSLCAG00010006005)
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT00390000013298	ENSGT00390000000134.a.c	ENSGT00390000013726.d	ENSGT00530000063711.b
Turbot	MODERN SPECIES	20	sgsh (ENSSMAG00000005370)	slc26a11 (ENSSMAG00000005312)	ENSSMAG00000036348	ENSSMAG00000032899	ENSSMAG00000031859	ENSSMAG00000024312	nanos3 (ENSSMAG00000037642)	CC2D1A (ENSSMAG00000004649)	MRI1 (ENSSMAG00000004636)	zgc:136864 (ENSSMAG00000029034)	ENSSMAG00000004626	ENSSMAG00000004382	khsrp (ENSSMAG00000004167)	DCAF15 (ENSSMAG00000004136)	ENSSMAG00000004130	rln3b (ENSSMAG00000004103) ##22	ENSSMAG00000004050	ENSSMAG00000004029	ENSSMAG00000004015	ENSSMAG00000003898	ENSSMAG00000003770	si:ch211-202h22.8 (ENSSMAG00000027722)	gprc5bb (ENSSMAG00000003751)	ENSSMAG00000003742	exosc1 (ENSSMAG00000003721)	ENSSMAG00000003705	pi4k2a (ENSSMAG00000003697)	zfyve27 (ENSSMAG00000003635)	golga7ba (ENSSMAG00000003611)	crtac1a (ENSSMAG00000003585)	LOXL4 (ENSSMAG00000003548)
Ovalentaria	ANCESTRAL SPECIES		ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a.j	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT01030000234810	ENSGT00940000167543	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT01030000234810	ENSGT00940000155366.b.a.b	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.i	ENSGT00940000167543	ENSGT00940000155366.b.a.b.j	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000158204.d	ENSGT00390000013080.e.a	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.i	ENSGT00940000167543	ENSGT00940000155366.b.a.b.j	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b
NAME_6	ANCESTRAL SPECIES	96	ENSGT00940000158204.d	ENSGT00390000013080.e.a	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.i	ENSGT00940000155366.b.a.b.j	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b
Sailfin molly	MODERN SPECIES	1178	npb (ENSPLAG00000011025)	sgsh (ENSPLAG00000010981)	slc26a11 (ENSPLAG00000010935)	ENSPLAG00000010919	ENSPLAG00000010903	ENSPLAG00000010888	nanos3 (ENSPLAG00000010871)	ENSPLAG00000010861	mri1 (ENSPLAG00000010852)	zgc:136864 (ENSPLAG00000010829)	ENSPLAG00000010822	ENSPLAG00000010802	khsrp (ENSPLAG00000010763)	DCAF15 (ENSPLAG00000010739)	RFX1 (ENSPLAG00000010727)	rln3b (ENSPLAG00000010703) ##22	TNPO2 (ENSPLAG00000010687)
Guppy	MODERN SPECIES	439	gnav1 (ENSPREG00000000431)	npb (ENSPREG00000000430)	sgsh (ENSPREG00000000429)	slc26a11 (ENSPREG00000000428)	ENSPREG00000000427	ENSPREG00000000426	nanos3 (ENSPREG00000000425)	ENSPREG00000000424	zgc:136864 (ENSPREG00000000423)	mri1 (ENSPREG00000000422)	ENSPREG00000000421	ENSPREG00000000420	khsrp (ENSPREG00000000419)	DCAF15 (ENSPREG00000000418)	RFX1 (ENSPREG00000000417)	rln3b (ENSPREG00000000416) ##22	TNPO2 (ENSPREG00000000415)	NTHL1 (ENSPREG00000000414)	TSC2 (ENSPREG00000000413)	ENSPREG00000000412	ENSPREG00000000411	si:ch211-202h22.8 (ENSPREG00000000410)	si:ch211-202h22.9 (ENSPREG00000000409)	ENSPREG00000000408	gprc5bb (ENSPREG00000000407)	ENSPREG00000000406	exosc1 (ENSPREG00000000405)	ENSPREG00000000404	pi4k2a (ENSPREG00000000403)	ENSPREG00000000402	ENSPREG00000000401
Platyfish	MODERN SPECIES	19	sgsh (ENSXMAG00000012930)	slc26a11 (ENSXMAG00000012920)	ENSXMAG00000022142	ENSXMAG00000021826	ENSXMAG00000023241	nanos3 (ENSXMAG00000023751)	ENSXMAG00000012904	mri1 (ENSXMAG00000027505)	zgc:136864 (ENSXMAG00000027120)	ENSXMAG00000026840	ENSXMAG00000029368	ENSXMAG00000012893	khsrp (ENSXMAG00000012876)	DCAF15 (ENSXMAG00000012868)	RFX1 (ENSXMAG00000012853)	rln3b (ENSXMAG00000012850) ##22	TNPO2 (ENSXMAG00000012793)	ENSXMAG00000012783	NTHL1 (ENSXMAG00000012778)	TSC2 (ENSXMAG00000012749)	ENSXMAG00000012736	ENSXMAG00000023143	ENSXMAG00000012731	ENSXMAG00000024512	ENSXMAG00000021027	ENSXMAG00000028535	gprc5bb (ENSXMAG00000012722)	ENSXMAG00000012720	exosc1 (ENSXMAG00000023382)	ENSXMAG00000012705	pi4k2a (ENSXMAG00000027594)
NAME_4	ANCESTRAL SPECIES	28	ENSGT00550000075065.b	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT01030000234810	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01080000257510
Sheepshead minnow	MODERN SPECIES	901								CC2D1A (ENSCVAG00000023178)	mri1 (ENSCVAG00000023215)	zgc:136864 (ENSCVAG00000023223)	ENSCVAG00000023248	ENSCVAG00000023320	khsrp (ENSCVAG00000001873)	DCAF15 (ENSCVAG00000001882)	RFX1 (ENSCVAG00000001888)	rln3b (ENSCVAG00000001892) ##22	TNPO2 (ENSCVAG00000001908)	ENSCVAG00000001913	NTHL1 (ENSCVAG00000001917)	TSC2 (ENSCVAG00000001933)	ENSCVAG00000001961	ENSCVAG00000001966
Mummichog	MODERN SPECIES	455								CC2D1A (ENSFHEG00000000216)	mri1 (ENSFHEG00000009358)	zgc:136864 (ENSFHEG00000009364)	ENSFHEG00000009384	ENSFHEG00000009440	khsrp (ENSFHEG00000009577)	DCAF15 (ENSFHEG00000009594)	RFX1 (ENSFHEG00000009616)	rln3b (ENSFHEG00000009632) ##22	TNPO2 (ENSFHEG00000009734)	ENSFHEG00000009779	NTHL1 (ENSFHEG00000009806)	TSC2 (ENSFHEG00000010273)	ENSFHEG00000010477	ENSFHEG00000000821	si:ch211-202h22.8 (ENSFHEG00000010616)	ENSFHEG00000010652
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j.e.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a
Mangrove rivulus	MODERN SPECIES	38	npb (ENSKMAG00000018891)	sgsh (ENSKMAG00000018856)	slc26a11 (ENSKMAG00000018831)	ENSKMAG00000018812	ENSKMAG00000018799	ENSKMAG00000018776	nanos3 (ENSKMAG00000018767)	CC2D1A (ENSKMAG00000018726)	mri1 (ENSKMAG00000018700)	zgc:136864 (ENSKMAG00000018691)	ENSKMAG00000018665	ENSKMAG00000018627	khsrp (ENSKMAG00000018579)	DCAF15 (ENSKMAG00000018543)	RFX1 (ENSKMAG00000018514)	rln3b (ENSKMAG00000018499) ##22	TNPO2 (ENSKMAG00000018430)	NHERF2 (ENSKMAG00000018408)	NTHL1 (ENSKMAG00000018365)	TSC2 (ENSKMAG00000018301)	ENSKMAG00000018176	ENSKMAG00000018141
Oryzias	ANCESTRAL SPECIES	28	ENSGT00940000164753.b	ENSGT00940000158204.d	ENSGT00390000013080.h	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.c.b.a.b.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT00390000013298	ENSGT00390000000134.a.c
Oryzias_b	ANCESTRAL SPECIES	25	ENSGT00550000075065.b	ENSGT00940000158204.d	ENSGT00390000013080.h	ENSGT01070000253775.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.c.b.a.b.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00390000010434.b	ENSGT01030000234958
Indian medaka	MODERN SPECIES	35	pcyt2 (ENSOMEG00000012760)	npb (ENSOMEG00000012783)	sgsh (ENSOMEG00000012828)	slc26a11 (ENSOMEG00000012886)	ENSOMEG00000012910	ENSOMEG00000012941	nanos3 (ENSOMEG00000000922)	CC2D1A (ENSOMEG00000013087)	mri1 (ENSOMEG00000013120)	zgc:136864 (ENSOMEG00000013133)	ENSOMEG00000013152	ENSOMEG00000013195	khsrp (ENSOMEG00000013233)	DCAF15 (ENSOMEG00000013277)	RFX1 (ENSOMEG00000013316)	rln3b (ENSOMEG00000013338) ##22	ENSOMEG00000013373	TNPO2 (ENSOMEG00000013440)	ENSOMEG00000013466	NTHL1 (ENSOMEG00000013509)	TSC2 (ENSOMEG00000013613)	ENSOMEG00000013652	ENSOMEG00000013668	ENSOMEG00000013710	gprc5bb (ENSOMEG00000013737)	ENSOMEG00000013753	ENSOMEG00000013776	ENSOMEG00000013812	ENSOMEG00000013834	pi4k2a (ENSOMEG00000013871)	exosc1 (ENSOMEG00000013907)
Javanese ricefish	MODERN SPECIES		sgsh (ENSOJAG00000001709)	slc26a11 (ENSOJAG00000001781)	ENSOJAG00000001814	nanos3 (ENSOJAG00000001818)	ENSOJAG00000001824	ENSOJAG00000001831	ENSOJAG00000001839	ENSOJAG00000001868	MRI1 (ENSOJAG00000001910)	zgc:136864 (ENSOJAG00000001924)	ENSOJAG00000001931	ENSOJAG00000001948	khsrp (ENSOJAG00000002078)	DCAF15 (ENSOJAG00000002171)	RFX1 (ENSOJAG00000002186)	rln3b (ENSOJAG00000002242) ##22	ENSOJAG00000002252	NHERF2 (ENSOJAG00000002322)	NTHL1 (ENSOJAG00000002343)	ENSOJAG00000002633	si:ch211-202h22.9 (ENSOJAG00000002649)	gprc5bb (ENSOJAG00000002661)	ENSOJAG00000002674	exosc1 (ENSOJAG00000002681)	pi4k2a (ENSOJAG00000002690)	ENSOJAG00000002715	ENSOJAG00000003603	b3gntl1 (ENSOJAG00000009506)	zgc:172091 (ENSOJAG00000009712)	ENSOJAG00000009847	crb3b (ENSOJAG00000009880)
Oryzias_a	ANCESTRAL SPECIES	34	ENSGT00940000158204.d	ENSGT00390000013080.h	ENSGT01070000253775.b.g	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000159428.e.a	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.a.c.b.a.b.b	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00390000010434.b	ENSGT00390000013298	ENSGT00390000000134.a.c	ENSGT00390000013726.d
Chinese medaka	MODERN SPECIES	326	SIRT7 (ENSOSIG00000005960)	pcyt2 (ENSOSIG00000005964)	gnav1 (ENSOSIG00000005967)	npb (ENSOSIG00000005970)	sgsh (ENSOSIG00000005972)	slc26a11 (ENSOSIG00000005980)	ENSOSIG00000006170	ENSOSIG00000006171	mri1 (ENSOSIG00000006178)	zgc:136864 (ENSOSIG00000006180)	ENSOSIG00000006181	ENSOSIG00000006185	khsrp (ENSOSIG00000006193)	DCAF15 (ENSOSIG00000006196)	RFX1 (ENSOSIG00000006201)	rln3b (ENSOSIG00000006472) ##22	ENSOSIG00000006475	NTHL1 (ENSOSIG00000006486)	TSC2 (ENSOSIG00000006511)
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000028837	ENSORLG00000026002	slc26a11 (ENSORLG00000012068)	ENSORLG00000012039	ENSORLG00000022735	ENSORLG00000012029	nanos3 (ENSORLG00000012018)	CC2D1A (ENSORLG00000012008)	MRI1 (ENSORLG00000011911)	zgc:136864 (ENSORLG00000011899)	ENSORLG00000011895	ENSORLG00000025305	khsrp (ENSORLG00000011882)	DCAF15 (ENSORLG00000011832)	RFX1 (ENSORLG00000011800)	rln3b (ENSORLG00000011777) ##22	ENSORLG00000025394	TNPO2 (ENSORLG00000011763)	TNPO2 (ENSORLG00000022095)	ENSORLG00000011708	NTHL1 (ENSORLG00000011679)	ENSORLG00000023371	TSC2 (ENSORLG00000011670)	pkd1a (ENSORLG00000019755)	ENSORLG00000024107	si:ch211-202h22.9 (ENSORLG00000011630)	gprc5bb (ENSORLG00000011627)	ENSORLG00000022315	exosc1 (ENSORLG00000011595)	pi4k2a (ENSORLG00000011548)	zfyve27 (ENSORLG00000011526)
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000156038.a.a.d.a.i.a	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a.j	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510
Pomacentridae	ANCESTRAL SPECIES	20	ENSGT00950000183145.B.a.a.b.f	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.e.a	ENSGT00940000156038.a.a.d.a.i.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a.r	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510	ENSGT00940000181970
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a.r	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01080000257510	ENSGT00940000181970
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000158204.d	ENSGT00390000013080	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.f.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a.r	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958	ENSGT01100000263491.a.b.b.c.a.b	ENSGT00390000013298
Clown anemonefish	MODERN SPECIES	1275	ENSAOCG00000009779	ENSAOCG00000009794	ENSAOCG00000009806	ENSAOCG00000009827	ENSAOCG00000009839	ENSAOCG00000009862	nanos3 (ENSAOCG00000009870)	CC2D1A (ENSAOCG00000009895)	mri1 (ENSAOCG00000009931)	zgc:136864 (ENSAOCG00000009948)	ENSAOCG00000009971	ENSAOCG00000010018	khsrp (ENSAOCG00000010049)	DCAF15 (ENSAOCG00000010062)	RFX1 (ENSAOCG00000010080)	rln3b (ENSAOCG00000002481) ##22	TNPO2 (ENSAOCG00000010152)	NHERF2 (ENSAOCG00000010288)	NTHL1 (ENSAOCG00000010339)	TSC2 (ENSAOCG00000010454)	ENSAOCG00000010604	ENSAOCG00000010628	si:ch211-202h22.8 (ENSAOCG00000010638)	gprc5bb (ENSAOCG00000010656)	ENSAOCG00000010666	exosc1 (ENSAOCG00000010699)	ENSAOCG00000010722	pi4k2a (ENSAOCG00000010764)	ENSAOCG00000010777	ENSAOCG00000010799	ENSAOCG00000010812
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000013787	ENSAPEG00000013771	ENSAPEG00000013757	ENSAPEG00000013741	nanos3 (ENSAPEG00000013733)	CC2D1A (ENSAPEG00000013670)	ENSAPEG00000013610	ENSAPEG00000013584	mri1 (ENSAPEG00000013553)	zgc:136864 (ENSAPEG00000013516)	ENSAPEG00000013491	ENSAPEG00000013438	khsrp (ENSAPEG00000013411)	DCAF15 (ENSAPEG00000013391)	RFX1 (ENSAPEG00000013349)	rln3b (ENSAPEG00000013377) ##22	TNPO2 (ENSAPEG00000013268)	NHERF2 (ENSAPEG00000013156)	NTHL1 (ENSAPEG00000013130)	TSC2 (ENSAPEG00000012998)	ENSAPEG00000012844	ENSAPEG00000012772	si:ch211-202h22.8 (ENSAPEG00000012749)	gprc5bb (ENSAPEG00000012739)	ENSAPEG00000012723	exosc1 (ENSAPEG00000012690)	ENSAPEG00000012667	pi4k2a (ENSAPEG00000012639)	ENSAPEG00000012617	ENSAPEG00000012605	zfyve27 (ENSAPEG00000012565)
Spiny chromis	MODERN SPECIES	26	npb (ENSAPOG00000009877)	sgsh (ENSAPOG00000009865)	slc26a11 (ENSAPOG00000000758)	ENSAPOG00000009799	ENSAPOG00000009794	ENSAPOG00000009778	nanos3 (ENSAPOG00000009762)	CC2D1A (ENSAPOG00000009737)	mri1 (ENSAPOG00000009673)	zgc:136864 (ENSAPOG00000009647)	ENSAPOG00000009638	ENSAPOG00000009597	khsrp (ENSAPOG00000009524)	DCAF15 (ENSAPOG00000009405)	RFX1 (ENSAPOG00000009380)	rln3b (ENSAPOG00000009352) ##22	TNPO2 (ENSAPOG00000009339)	ENSAPOG00000009241	NTHL1 (ENSAPOG00000009229)	TSC2 (ENSAPOG00000009130)	ENSAPOG00000008133	ENSAPOG00000007898	si:ch211-202h22.8 (ENSAPOG00000007861)	gprc5bb (ENSAPOG00000007837)	ENSAPOG00000007832	exosc1 (ENSAPOG00000007822)	ENSAPOG00000007805	pi4k2a (ENSAPOG00000007792)	ENSAPOG00000007739	ENSAPOG00000007723	ENSAPOG00000007711
Bicolor damselfish	MODERN SPECIES	425	sgsh (ENSSPAG00000008059)	slc26a11 (ENSSPAG00000008077)	ENSSPAG00000008128	ENSSPAG00000008135	ENSSPAG00000008149	ENSSPAG00000008164	nanos3 (ENSSPAG00000008183)	CC2D1A (ENSSPAG00000008203)	mri1 (ENSSPAG00000008235)	zgc:136864 (ENSSPAG00000008281)	ENSSPAG00000008256	ENSSPAG00000008297	khsrp (ENSSPAG00000008349)	DCAF15 (ENSSPAG00000008417)	ENSSPAG00000008441	rln3b (ENSSPAG00000008492) ##22	TNPO2 (ENSSPAG00000008511)	NHERF2 (ENSSPAG00000008551)	NTHL1 (ENSSPAG00000008561)	TSC2 (ENSSPAG00000008590)
Cichlidae	ANCESTRAL SPECIES	3	ENSGT01070000253775.b	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.n	ENSGT00940000167543	ENSGT00940000155366.b.a.b.m	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000155366.b.a.b.n	ENSGT00940000167543	ENSGT00940000155366.b.a.b.m	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01030000234958
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT00940000155366.b.a.b.m	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000156038.a.a.d.a.j	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543	ENSGT00940000155366.b.a.b.m	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT01070000253775.b	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543.i	ENSGT00940000155366.b.a.b.m	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00950000183145.B.a.a.b.e.b	ENSGT00950000183145.B.a.a.b.f.e.a.b	ENSGT00950000183145.A.a	ENSGT00950000183145.B.a.a.b.f.e.a.a	ENSGT01100000263525.a.b.a.a	ENSGT00940000177102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000161004	ENSGT00940000158786	ENSGT00940000156051.c.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00940000167543.i	ENSGT00940000167543.j	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.b	ENSGT00390000010434.b	ENSGT01080000257510	ENSGT01100000263491.a.b.b.c.a.b
Zebra mbuna	MODERN SPECIES	1109	slc26a11 (ENSMZEG00005007858)	ENSMZEG00005007843	ENSMZEG00005007755	ENSMZEG00005007722	ENSMZEG00005007712	ENSMZEG00005007707	ENSMZEG00005007701	nanos3 (ENSMZEG00005007690)	CC2D1A (ENSMZEG00005007673)	mri1 (ENSMZEG00005007657)	zgc:136864 (ENSMZEG00005007631)	ENSMZEG00005007622	ENSMZEG00005007598	DCAF15 (ENSMZEG00005007530)	RFX1 (ENSMZEG00005007468)	rln3b (ENSMZEG00005007510) ##22	TNPO2 (ENSMZEG00005007408)	NHERF2 (ENSMZEG00005007390)	NTHL1 (ENSMZEG00005007375)	TSC2 (ENSMZEG00005007304)	ENSMZEG00005007255	ENSMZEG00005007208	si:ch211-202h22.9 (ENSMZEG00005007175)	ENSMZEG00005007160	si:ch211-202h22.9 (ENSMZEG00005007105)	gprc5bb (ENSMZEG00005007079)	ENSMZEG00005007069	exosc1 (ENSMZEG00005007042)	ENSMZEG00005007028	pi4k2a (ENSMZEG00005006999)	ENSMZEG00005006989
Eastern happy	MODERN SPECIES	18	gnav1 (ENSACLG00000020120)	npb (ENSACLG00000020145)	sgsh (ENSACLG00000020155)	slc26a11 (ENSACLG00000020208)	ENSACLG00000020227	ENSACLG00000020319	nanos3 (ENSACLG00000020332)	ENSACLG00000020352	mri1 (ENSACLG00000020412)	zgc:136864 (ENSACLG00000020422)	ENSACLG00000020439	ENSACLG00000020456	khsrp (ENSACLG00000020487)	DCAF15 (ENSACLG00000020575)	RFX1 (ENSACLG00000020623)	rln3b (ENSACLG00000020651) ##22	TNPO2 (ENSACLG00000020672)	NHERF2 (ENSACLG00000020749)	NTHL1 (ENSACLG00000020790)	TSC2 (ENSACLG00000020810)	ENSACLG00000020920	ENSACLG00000021043	si:ch211-202h22.9 (ENSACLG00000021163)	si:ch211-202h22.9 (ENSACLG00000021189)	gprc5bb (ENSACLG00000021197)	ENSACLG00000021223	exosc1 (ENSACLG00000021243)	ENSACLG00000021276	pi4k2a (ENSACLG00000021296)	ENSACLG00000021348	ENSACLG00000021361
P. nyererei	MODERN SPECIES	360	npb (ENSPNYG00000002038)	sgsh (ENSPNYG00000002001)	slc26a11 (ENSPNYG00000001883)	ENSPNYG00000001850	ENSPNYG00000001825	ENSPNYG00000001814	nanos3 (ENSPNYG00000001788)	CC2D1A (ENSPNYG00000001590)	mri1 (ENSPNYG00000001542)	zgc:136864 (ENSPNYG00000001528)	ENSPNYG00000001504	ENSPNYG00000001464	khsrp (ENSPNYG00000001374)	DCAF15 (ENSPNYG00000001330)	RFX1 (ENSPNYG00000001317)	rln3b (ENSPNYG00000001301) ##22	TNPO2 (ENSPNYG00000001235)	NHERF2 (ENSPNYG00000001179)	NTHL1 (ENSPNYG00000001147)	TSC2 (ENSPNYG00000001025)	ENSPNYG00000000805	ENSPNYG00000000748	si:ch211-202h22.9 (ENSPNYG00000000704)	si:ch211-202h22.8 (ENSPNYG00000000691)	gprc5bb (ENSPNYG00000021774)	ENSPNYG00000021765	exosc1 (ENSPNYG00000021745)	ENSPNYG00000021726	pi4k2a (ENSPNYG00000021702)	ENSPNYG00000021670	ENSPNYG00000021660
Burton s mouthbrooder	MODERN SPECIES	337	sgsh (ENSHBUG00000018877)	slc26a11 (ENSHBUG00000018824)	ENSHBUG00000018807	ENSHBUG00000018798	ENSHBUG00000018759	ENSHBUG00000018742	nanos3 (ENSHBUG00000018730)	ENSHBUG00000018697	mri1 (ENSHBUG00000018620)	zgc:136864 (ENSHBUG00000018596)	ENSHBUG00000000556	ENSHBUG00000018567	khsrp (ENSHBUG00000018543)	DCAF15 (ENSHBUG00000001095)	RFX1 (ENSHBUG00000001083)	rln3b (ENSHBUG00000018339) ##22	TNPO2 (ENSHBUG00000018317)	NHERF2 (ENSHBUG00000018254)	NTHL1 (ENSHBUG00000018223)	TSC2 (ENSHBUG00000018185)	ENSHBUG00000018076	ENSHBUG00000017920	ENSHBUG00000017892	gprc5bb (ENSHBUG00000017884)	ENSHBUG00000017874	exosc1 (ENSHBUG00000017857)	ENSHBUG00000017828	pi4k2a (ENSHBUG00000017804)
Lyretail cichlid	MODERN SPECIES	308	gnav1 (ENSNBRG00000023676)	npb (ENSNBRG00000023685)	sgsh (ENSNBRG00000023693)	slc26a11 (ENSNBRG00000023707)	ENSNBRG00000023723	ENSNBRG00000023734	nanos3 (ENSNBRG00000023737)	ENSNBRG00000023750	mri1 (ENSNBRG00000023766)	zgc:136864 (ENSNBRG00000023771)	ENSNBRG00000023777	ENSNBRG00000023782	khsrp (ENSNBRG00000023797)	DCAF15 (ENSNBRG00000023810)	RFX1 (ENSNBRG00000023821)	rln3b (ENSNBRG00000023834) ##22	TNPO2 (ENSNBRG00000023849)	ENSNBRG00000023866	NTHL1 (ENSNBRG00000023880)	TSC2 (ENSNBRG00000023922)	ENSNBRG00000023974	ENSNBRG00000023992	ENSNBRG00000023995	gprc5bb (ENSNBRG00000024001)	ENSNBRG00000024005	exosc1 (ENSNBRG00000024007)	ENSNBRG00000024011	ENSNBRG00000024018	pi4k2a (ENSNBRG00000024021)	ENSNBRG00000024028	ENSNBRG00000024031
Nile tilapia	MODERN SPECIES	18	sgsh (ENSONIG00000017748)	slc26a11 (ENSONIG00000017745)	ENSONIG00000017739	ENSONIG00000028581	ENSONIG00000039217	ENSONIG00000026626	nos (ENSONIG00000020588)	CC2D1A (ENSONIG00000017736)	mri1 (ENSONIG00000017732)	zgc:136864 (ENSONIG00000043085)	ENSONIG00000041822	ENSONIG00000017723	khsrp (ENSONIG00000017713)	DCAF15 (ENSONIG00000017709)	RFX1 (ENSONIG00000028286)	rln3b (ENSONIG00000017708) ##22	TNPO2 (ENSONIG00000017706)	ENSONIG00000028869	ENSONIG00000016474	METRNL (ENSONIG00000016472)	b3gntl1 (ENSONIG00000016471)	EPN3 (ENSONIG00000016470)	ENSONIG00000016467	ENSONIG00000016466	ENSONIG00000016464	ENSONIG00000042030	ENSONIG00000027908	ENSONIG00000037618	ENSONIG00000021119	slc25a10b (ENSONIG00000016462)	ENSONIG00000016459
Midas cichlid	MODERN SPECIES	1113	sgsh (ENSACIG00000008934)	slc26a11 (ENSACIG00000008967)	ENSACIG00000009044	ENSACIG00000009065	ENSACIG00000009077	ENSACIG00000009089	nanos3 (ENSACIG00000009111)	ENSACIG00000009129	mri1 (ENSACIG00000009199)	zgc:136864 (ENSACIG00000009222)	ENSACIG00000009257	ENSACIG00000009273	khsrp (ENSACIG00000009298)	DCAF15 (ENSACIG00000009425)	RFX1 (ENSACIG00000009456)	rln3b (ENSACIG00000009521) ##22	TNPO2 (ENSACIG00000009586)	ENSACIG00000009640	NTHL1 (ENSACIG00000009673)	TSC2 (ENSACIG00000009718)	ENSACIG00000009849	ENSACIG00000009985
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005017358	ENSMMDG00005017357	ENSMMDG00005017356	ENSMMDG00005017355	ENSMMDG00005017354	ENSMMDG00005017353	nanos3 (ENSMMDG00005017352)	CC2D1A (ENSMMDG00005017343)	mri1 (ENSMMDG00005017336)	zgc:136864 (ENSMMDG00005017334)	ENSMMDG00005017333	ENSMMDG00005017330	khsrp (ENSMMDG00005017285)	DCAF15 (ENSMMDG00005017280)	RFX1 (ENSMMDG00005016937)	rln3b (ENSMMDG00005016933) ##22	TNPO2 (ENSMMDG00005016900)	NHERF2 (ENSMMDG00005016890)	NTHL1 (ENSMMDG00005016888)	TSC2 (ENSMMDG00005015317)	ENSMMDG00005015280	ENSMMDG00005015270	tekt4 (ENSMMDG00005015265)	si:ch211-202h22.9 (ENSMMDG00005015185)	gprc5bb (ENSMMDG00005015179)	ENSMMDG00005015174	exosc1 (ENSMMDG00005015172)	pgam1b (ENSMMDG00005015171)	pi4k2a (ENSMMDG00005015133)	zgc:171482 (ENSMMDG00005015125)	zfyve27 (ENSMMDG00005015119)
Cod	MODERN SPECIES	16	pcyt2 (ENSGMOG00000006137)	npb (ENSGMOG00000015073)	sgsh (ENSGMOG00000015050)	slc26a11 (ENSGMOG00000015014)	ENSGMOG00000008025	ENSGMOG00000029654	ENSGMOG00000026600	Nanos (ENSGMOG00000034060)	ENSGMOG00000016500	mri1 (ENSGMOG00000002273)	ENSGMOG00000034889	ENSGMOG00000002224	ENSGMOG00000002166	DCAF15 (ENSGMOG00000014339)	ENSGMOG00000014293	rln3b (ENSGMOG00000014285) ##22	ENSGMOG00000014237	ENSGMOG00000035316	ENSGMOG00000010665	NTHL1 (ENSGMOG00000010658)	ENSGMOG00000010614	ENSGMOG00000024694	ENSGMOG00000033613	ENSGMOG00000010560	ENSGMOG00000018538
Otomorpha	ANCESTRAL SPECIES	254														ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000155366.b.a.b.a	ENSGT00940000167543.d	ENSGT00940000167543.c	ENSGT00950000182849.B.c.a.b.b	ENSGT00950000182933.B.a.b.b	ENSGT00950000182933.B.a.b.a.j	ENSGT00940000165523.b	ENSGT00940000155366.b.a.a
Otophysi	ANCESTRAL SPECIES	28	ENSGT01100000263977	ENSGT00990000204616	ENSGT00390000002789	ENSGT00980000199991	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.b.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000176048	ENSGT00940000167543.c	ENSGT00940000155366.b.a.b.a	ENSGT00940000167543.d	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a
Characiphysae	ANCESTRAL SPECIES	32	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000156461	ENSGT00940000167000	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000162977	ENSGT00390000011529	ENSGT00940000156048.e.b.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000176048	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00940000166659	ENSGT00390000010434.b
Channel catfish	MODERN SPECIES	18	BTBD3 (ENSIPUG00000006570)	esf1 (ENSIPUG00000006507)	ENSIPUG00000006494	ENSIPUG00000006477	ndufaf5 (ENSIPUG00000006437)	ENSIPUG00000006313	nup133 (ENSIPUG00000006226)	acta1a (ENSIPUG00000006203)	ENSIPUG00000006186	RHOU (ENSIPUG00000006151)	dla (ENSIPUG00000006099)	ENSIPUG00000006062	smdt1b (ENSIPUG00000006057)	dcaf15 (ENSIPUG00000006001)	RFX1 (ENSIPUG00000005967)	rln3 (ENSIPUG00000005954) ##22	spast (ENSIPUG00000005926)	UGP2 (ENSIPUG00000005867)	mdh1aa (ENSIPUG00000005818)	otx1 (ENSIPUG00000005796)	ENSIPUG00000005709	pus10 (ENSIPUG00000005627)	cct4 (ENSIPUG00000024407)	ENSIPUG00000024406	ENSIPUG00000024404	XPO1 (ENSIPUG00000024394)	USP34 (ENSIPUG00000024387)	ENSIPUG00000024386	Commd1 (ENSIPUG00000024384)	b3gnt2a (ENSIPUG00000024378)	ENSIPUG00000024377
Characiphysae_b	ANCESTRAL SPECIES	49	ENSGT01100000263833	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000167000	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000162838.g.a	ENSGT00390000011529	ENSGT00940000156048.e.b.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00990000206722	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a.i	ENSGT00940000166659	ENSGT00390000010434.b
Characoidei	ANCESTRAL SPECIES	54	ENSGT00950000182886.b.a.b	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000167000	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000162838.g.a	ENSGT00390000011529	ENSGT00940000156048.e.b.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00990000206722	ENSGT01030000234810	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00950000182926.b.d.a.a.a.a.i	ENSGT00940000166659	ENSGT00390000010434.b
Red-bellied piranha	MODERN SPECIES	544														DCAF15 (ENSPNAG00000026063)	RFX1 (ENSPNAG00000004000)	rln3b (ENSPNAG00000006610) ##22	TNPO2 (ENSPNAG00000026208)	NHERF2 (ENSPNAG00000026232)	NTHL1 (ENSPNAG00000026245)	TSC2 (ENSPNAG00000028438)	ENSPNAG00000028562
Mexicana tetra	MODERN SPECIES	3	nup133 (ENSAMXG00000032478)	acta1a (ENSAMXG00000003516)	ENSAMXG00000040470	RHOU (ENSAMXG00000031485)	dla (ENSAMXG00000001138)	ENSAMXG00000001130	smdt1b (ENSAMXG00000032854)	ENSAMXG00000030826	ENSAMXG00000036745	ENSAMXG00000039685	ENSAMXG00000034135	ENSAMXG00000030715	ENSAMXG00000024930	DCAF15 (ENSAMXG00000010080)	RFX1 (ENSAMXG00000010111)	rln3b (ENSAMXG00000031174) ##22	TNPO2 (ENSAMXG00000010427)	NHERF2 (ENSAMXG00000010367)	ENSAMXG00000032994	NTHL1 (ENSAMXG00000010412)	TSC2 (ENSAMXG00000010507)	ENSAMXG00000010725	ENSAMXG00000037908	tekt4 (ENSAMXG00000040608)	ENSAMXG00000011050	ENSAMXG00000041397	ENSAMXG00000030328	gprc5bb (ENSAMXG00000011098)	ENSAMXG00000031746	exosc1 (ENSAMXG00000011116)	pgam1b (ENSAMXG00000011124)
Electric eel	MODERN SPECIES	970													smdt1b (ENSEEEG00000018428)	DCAF15 (ENSEEEG00000018426)	RFX1 (ENSEEEG00000018424)	rln3b (ENSEEEG00000018423) ##22	TNPO2 (ENSEEEG00000018336)	NHERF2 (ENSEEEG00000018320)	NTHL1 (ENSEEEG00000018316)	TSC2 (ENSEEEG00000014271)	ENSEEEG00000014074
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT00940000166495	ENSGT01100000263977	ENSGT00990000204616	ENSGT00390000002789	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00940000156048.e.b.b	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00990000206722	ENSGT00940000167543.c.a	ENSGT00940000155366.b.a.b.a.a	ENSGT00940000155366.b.a.b.a.b	ENSGT00940000167543.d	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b
Cyprininae	ANCESTRAL SPECIES	139	ENSGT00940000155345.r.e	ENSGT00940000153408.B.s.b.p	ENSGT00550000074956.d	ENSGT00390000007529.h	ENSGT00940000166495.f	ENSGT00990000204616.c.b	ENSGT00940000158966.c	ENSGT00940000156048.e.b.b.a	ENSGT00390000003512.r.f	ENSGT00940000156644.e.a.b	ENSGT00940000159781.b.a	ENSGT00940000157340.k.a.f	ENSGT00390000017489.b.q.a	ENSGT00390000011987.i	ENSGT01050000244879.a.b.f.a	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a.e	ENSGT00950000183139.C.d	ENSGT00940000167012.a	ENSGT00940000165523.a.a	ENSGT00950000182849.B.c.a.a.f	ENSGT00510000047513	ENSGT00950000183139.C.c	ENSGT00940000167012.b	ENSGT00940000165523.a.b	ENSGT00950000182894.B	ENSGT00990000206722	ENSGT00940000167543.c.a	ENSGT00940000155366.b.a.b.a.a	ENSGT00940000155366.b.a.b.a.b
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00550000074956.d	ENSGT00390000007529.g	ENSGT00940000166495.f	ENSGT00990000204616.c.b	ENSGT00940000158966.c	ENSGT00940000153342.b.y	ENSGT00390000011529.g.a	ENSGT00940000156048.e.b.b.a	ENSGT00390000003512.r.f	ENSGT00940000156644.e.a.b	ENSGT00940000159781.b.a	ENSGT00940000157340.k.a.f	ENSGT00390000017489.b.q.a	ENSGT00390000011987.i	ENSGT01050000244879.a.b.f.a	ENSGT00940000154396.b.a.a.b.e ##22	ENSGT00940000156708.a.a.l	ENSGT00950000182849.B.c.a.a.f	ENSGT00510000047513	ENSGT00950000183139.C.c	ENSGT00940000167012.b	ENSGT00940000165523.a.b	ENSGT00950000182894.B	ENSGT00940000155366.b.a.b.a.b.a	ENSGT00940000167543.d	ENSGT00950000182961.b.c.b	ENSGT00390000015287.b.a.b	ENSGT00950000182926.b.d.a.a.a.a.h	ENSGT00940000166659.i.a	ENSGT00390000010434.b.m	ENSGT00510000049872
Golden-line barbel	MODERN SPECIES	180	cct4 (ENSSGRG00000044841)	pus10 (ENSSGRG00000044675)	ENSSGRG00000043969	ENSSGRG00000043959	ENSSGRG00000043957	taf5l (ENSSGRG00000043955)	acta1a (ENSSGRG00000043144)	nup133 (ENSSGRG00000043133)	ENSSGRG00000043130	RHOU (ENSSGRG00000043128)	dla (ENSSGRG00000043123)	ENSSGRG00000043120	smdt1b (ENSSGRG00000043119)	DCAF15 (ENSSGRG00000043118)	RFX1 (ENSSGRG00000042959)	rln3b (ENSSGRG00000042951) ##22	TNPO2 (ENSSGRG00000042225)	ENSSGRG00000042208	NTHL1 (ENSSGRG00000042207)	TSC2 (ENSSGRG00000042070)	ENSSGRG00000042068	ENSSGRG00000042067	ENSSGRG00000042066	ENSSGRG00000042065	si:ch211-202h22.9 (ENSSGRG00000042063)	si:ch211-202h22.8 (ENSSGRG00000042062)	ENSSGRG00000042061	gprc5bb (ENSSGRG00000042059)	ENSSGRG00000042057	exosc1 (ENSSGRG00000042009)	cdc25d (ENSSGRG00000042007)
Common carp reference	MODERN SPECIES	22	ENSCCRG00000015458	ltv1 (ENSCCRG00000079639)	ifngr1 (ENSCCRG00000016308)	ENSCCRG00000074183	capn9 (ENSCCRG00000058378)	taf5l (ENSCCRG00000057032)	nup133 (ENSCCRG00000057119)	acta1a (ENSCCRG00000073206)	ENSCCRG00000029468	RHOU (ENSCCRG00000029462)	dla (ENSCCRG00000029431)	ENSCCRG00000029424	smdt1b (ENSCCRG00000062741)	DCAF15 (ENSCCRG00000039912)	ENSCCRG00000039923	rln3b (ENSCCRG00000039926) ##22	ENSCCRG00000039976	ENSCCRG00000077985	NTHL1 (ENSCCRG00000025300)	ENSCCRG00000081340	ENSCCRG00000039008	ENSCCRG00000081325	ENSCCRG00000024536	ENSCCRG00000060345	ENSCCRG00000024541	si:ch211-202h22.8 (ENSCCRG00000059845)	gprc5bb (ENSCCRG00000055467)	exosc1 (ENSCCRG00000024520)	pgam1b (ENSCCRG00000065548)	ENSCCRG00000081744	cdc25d (ENSCCRG00000024507)
Cyprininae_a	ANCESTRAL SPECIES	381	ENSGT00990000204616.c.a	ENSGT00390000002789.k	ENSGT01040000243168	ENSGT00940000158966.d	ENSGT00940000153342.b.z	ENSGT00390000011529.g.b	ENSGT00940000156048.e.b.b.b	ENSGT00390000003512.r.e	ENSGT00940000156644.e.a.a	ENSGT00940000159781.b.b	ENSGT00940000157340.k.a.e	ENSGT00390000017489.b.q.b	ENSGT00390000011987.j	ENSGT01050000244879.a.b.f.b	ENSGT01030000235265	ENSGT00940000154396.b.a.a.b.f ##22	ENSGT00940000156708.a.a.k	ENSGT00950000182849.B.c.a.a.e	ENSGT00950000183139.C.d	ENSGT00940000167012.a	ENSGT00940000165523.a.a
Golden-line barbel	MODERN SPECIES	251	ENSSGRG00000027971	cct4 (ENSSGRG00000027455)	ENSSGRG00000027449	ENSSGRG00000027445	ltv1 (ENSSGRG00000027443)	capn9 (ENSSGRG00000027376)	acta1a (ENSSGRG00000026618)	CCSAP (ENSSGRG00000026610)	RHOU (ENSSGRG00000026606)	dla (ENSSGRG00000026601)	ENSSGRG00000026598	smdt1b (ENSSGRG00000026600)	DCAF15 (ENSSGRG00000026595)	ENSSGRG00000026594	ENSSGRG00000026593	rln3b (ENSSGRG00000026592) ##22	TNPO2 (ENSSGRG00000026522)	ENSSGRG00000026518	TSC2 (ENSSGRG00000026083)	ENSSGRG00000026081	ENSSGRG00000026080	ENSSGRG00000026079	tekt4 (ENSSGRG00000026075)	ENSSGRG00000026068	gprc5bb (ENSSGRG00000026066)	exosc1 (ENSSGRG00000026000)	pgam1b (ENSSGRG00000025996)	cdc25d (ENSSGRG00000025995)	pi4k2a (ENSSGRG00000025968)	ENSSGRG00000025966	zfyve27 (ENSSGRG00000025965)
Common carp reference	MODERN SPECIES	27	cct4 (ENSCCRG00000063170)	pus10 (ENSCCRG00000041553)	ENSCCRG00000040789	ifngr1 (ENSCCRG00000040763)	ltv1 (ENSCCRG00000071069)	ENSCCRG00000040759	capn9 (ENSCCRG00000077170)	taf5l (ENSCCRG00000082336)	nup133 (ENSCCRG00000077497)	acta1a (ENSCCRG00000060597)	ENSCCRG00000057480	dla (ENSCCRG00000027776)	ENSCCRG00000018620	DCAF15 (ENSCCRG00000018616)	ENSCCRG00000010256	rln3b (ENSCCRG00000074572) ##22	ENSCCRG00000018506	ENSCCRG00000079627	ENSCCRG00000073825	ENSCCRG00000031975	ENSCCRG00000055869	ENSCCRG00000080661	ENSCCRG00000013923	ENSCCRG00000013932	ENSCCRG00000070636	ENSCCRG00000057864	ENSCCRG00000013926	ENSCCRG00000013921	ENSCCRG00000031315	ENSCCRG00000012540	ENSCCRG00000070687
Goldfish	MODERN SPECIES		cct4 (ENSCARG00000001396)	ENSCARG00000001326	ENSCARG00000001302	ENSCARG00000001289	ifngr1 (ENSCARG00000001275)	capn9 (ENSCARG00000001166)	taf5l (ENSCARG00000001144)	nup133 (ENSCARG00000001124)	acta1a (ENSCARG00000001114)	ENSCARG00000001113	RHOU (ENSCARG00000001110)	dla (ENSCARG00000001070)	ENSCARG00000001059	smdt1b (ENSCARG00000001055)	RFX1 (ENSCARG00000001045)	rln3b (ENSCARG00000001042) ##22	ENSCARG00000001027	NTHL1 (ENSCARG00000001022)	TSC2 (ENSCARG00000000987)	ENSCARG00000000910	ENSCARG00000000855	ENSCARG00000000853	ENSCARG00000000845	ENSCARG00000000841	ENSCARG00000000833	si:ch211-202h22.8 (ENSCARG00000000830)	ENSCARG00000000825	gprc5bb (ENSCARG00000000823)	exosc1 (ENSCARG00000000811)	pgam1b (ENSCARG00000000796)	cdc25d (ENSCARG00000000785)
Zebrafish	MODERN SPECIES		pus10 (ENSDARG00000079973)	ENSDARG00000087205	ifngr1 (ENSDARG00000074771)	ltv1 (ENSDARG00000008490)	capn9 (ENSDARG00000012341)	taf5l (ENSDARG00000025808)	nup133 (ENSDARG00000010078)	acta1a (ENSDARG00000036371)	CCSAP (ENSDARG00000025325)	RHOU (ENSDARG00000005626)	dla (ENSDARG00000010791)	ENSDARG00000075870	smdt1b (ENSDARG00000098852)	DCAF15 (ENSDARG00000077790)	RFX1 (ENSDARG00000075904)	rln3b (ENSDARG00000116898) ##22	ENSDARG00000113296	TNPO2 (ENSDARG00000042887)	ENSDARG00000113474	NTHL1 (ENSDARG00000042881)	ENSDARG00000116122	TSC2 (ENSDARG00000103125)	ENSDARG00000030417	ENSDARG00000111601	ENSDARG00000087290	tekt4 (ENSDARG00000028899)	si:ch211-202h22.9 (ENSDARG00000079980)	si:ch211-202h22.8 (ENSDARG00000078138)	ENSDARG00000073912	gprc5bb (ENSDARG00000075141)	ENSDARG00000077721
Clupeiformes	ANCESTRAL SPECIES	263														ENSGT00390000011987	ENSGT01050000244879.a.b.f	ENSGT00940000154396.b.a.a.b ##22	ENSGT00940000156708.a.a	ENSGT00950000182849.B.c.a.a	ENSGT00510000047513	ENSGT00950000183139.C	ENSGT00940000167012	ENSGT00940000165523.a	ENSGT00950000182894.B	ENSGT00940000155366.b.a.b.a	ENSGT00940000167543.c	ENSGT00940000159473.l	ENSGT00950000182961.b.c	ENSGT00500000044955	ENSGT00390000015287.b	ENSGT00940000166659	ENSGT00390000010434.b.o
Atlantic herring	MODERN SPECIES	18	pvalb7 (ENSCHAG00000007266)	pla2g6 (ENSCHAG00000007281)	cbx6a (ENSCHAG00000007811)	nptxrb (ENSCHAG00000007834)	ENSCHAG00000007855	ENSCHAG00000008295	ENSCHAG00000008312	ENSCHAG00000008383	ENSCHAG00000008496	ENSCHAG00000008563	ENSCHAG00000008619	ENSCHAG00000008668	ENSCHAG00000008693	DCAF15 (ENSCHAG00000008698)	RFX1 (ENSCHAG00000008717)	rln3b (ENSCHAG00000008973) ##22	TNPO2 (ENSCHAG00000009010)	NHERF2 (ENSCHAG00000009103)	NTHL1 (ENSCHAG00000009107)	TSC2 (ENSCHAG00000009136)	ENSCHAG00000009620	ENSCHAG00000009929	tekt4 (ENSCHAG00000009938)	si:ch211-202h22.9 (ENSCHAG00000009953)	GPR139 (ENSCHAG00000010044)	gprc5bb (ENSCHAG00000010126)	ENSCHAG00000010140	exosc1 (ENSCHAG00000010158)	pgam1b (ENSCHAG00000010262)	pi4k2a (ENSCHAG00000010291)	ENSCHAG00000010349
Denticle herring	MODERN SPECIES	13	ELFN2 (ENSDCDG00000000293)	ENSDCDG00000000273	mfng (ENSDCDG00000000265)	golga7ba (ENSDCDG00000000246)	zfyve27 (ENSDCDG00000000220)	ENSDCDG00000031986	ENSDCDG00000031984	pi4k2a (ENSDCDG00000031949)	cdc25d (ENSDCDG00000031935)	aftpha (ENSDCDG00000031930)	lgalsla (ENSDCDG00000031927)	ENSDCDG00000031925	vps54 (ENSDCDG00000031751)	DCAF15 (ENSDCDG00000031736)	RFX1 (ENSDCDG00000031412)	rln3b (ENSDCDG00000031382) ##22	TNPO2 (ENSDCDG00000031306)	NHERF2 (ENSDCDG00000031293)	NTHL1 (ENSDCDG00000031283)	TSC2 (ENSDCDG00000027385)	ENSDCDG00000027326	ENSDCDG00000027316	tekt4 (ENSDCDG00000027315)	si:ch211-202h22.8 (ENSDCDG00000027312)	GPR139 (ENSDCDG00000027311)	gprc5bb (ENSDCDG00000027310)	ENSDCDG00000027309	exosc1 (ENSDCDG00000027306)	pgam1b (ENSDCDG00000027302)	ENSDCDG00000027300	ENSDCDG00000027274
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.b ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.b ##22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00940000154396.b.a.b ##22
Atlantic herring	MODERN SPECIES	15	ENSCHAG00000010030	ENSCHAG00000010021	mvp (ENSCHAG00000009698)	nlk1 (ENSCHAG00000009646)	ENSCHAG00000009604	ENSCHAG00000009576	ENSCHAG00000009308	ENSCHAG00000009184	ENSCHAG00000009152	ENSCHAG00000009144	hirip3 (ENSCHAG00000009067)	kctd13 (ENSCHAG00000009040)	ENSCHAG00000007285	ENSCHAG00000007146	ENSCHAG00000006764	ENSCHAG00000006718 ##22	ENSCHAG00000006635	ENSCHAG00000006615	ENSCHAG00000006566	dhps (ENSCHAG00000006250)	ENSCHAG00000005453	ENSCHAG00000005423	ENSCHAG00000005395	ENSCHAG00000005375	ENSCHAG00000005370	ENSCHAG00000005342	ENSCHAG00000005110	ENSCHAG00000005058	ENSCHAG00000005030	ENSCHAG00000004996	ENSCHAG00000004978
Reedfish	MODERN SPECIES	8	ENSECRG00000017695	wdr83os (ENSECRG00000017737)	wdr83 (ENSECRG00000017814)	yju2b (ENSECRG00000017845)	gtf2f1 (ENSECRG00000017878)	ENSECRG00000017916	alkbh7 (ENSECRG00000017937)	dhps (ENSECRG00000017948)	ENSECRG00000017971	FBXW9 (ENSECRG00000017989)	NANOS3 (ENSECRG00000018002)	CC2D1A (ENSECRG00000018031)	PODNL1 (ENSECRG00000018134)	DCAF15 (ENSECRG00000018254)	rfx1a (ENSECRG00000018307)	rln3b (ENSECRG00000018369) ##22	ENSECRG00000018392	TNPO2 (ENSECRG00000018514)	ENSECRG00000018738	khsrp (ENSECRG00000018811)	ENSECRG00000019007	ENSECRG00000019032	mri1 (ENSECRG00000019066)	zgc:136864 (ENSECRG00000019080)	ZSWIM4 (ENSECRG00000019119)	ENSECRG00000019184	ENSECRG00000019222	LRRC8E (ENSECRG00000019247)	EVI5L (ENSECRG00000019273)	ENSECRG00000019322	ddx39aa (ENSECRG00000019356)
Sarcopterygii	ANCESTRAL SPECIES	391								ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22
Tetrapoda	ANCESTRAL SPECIES	8				ENSGT00940000161573	ENSGT00950000183101.a.b.a	ENSGT00940000159428	ENSGT00940000156051	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00950000182993.B.b	ENSGT00390000014585	ENSGT00440000038032	ENSGT00530000063615.b	ENSGT00530000064123	ENSGT00390000018038	ENSGT00940000156518.C	ENSGT00900000141021.b.b	ENSGT00940000163101	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a	ENSGT00390000002121	ENSGT00940000159016	ENSGT00390000008063
Amniota	ANCESTRAL SPECIES	31	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00940000167422	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT01030000234559.a.a.b.a	ENSGT00940000166147	ENSGT00390000009916	ENSGT00940000154990	ENSGT00940000154912	ENSGT00940000160578	ENSGT00940000159684	ENSGT00390000004692.d.a	ENSGT00940000163111.a.b.a	ENSGT00530000063936.a
Sauria	ANCESTRAL SPECIES	22	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000167422	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT01030000234559.a.a.b.a	ENSGT00940000166147
Lepidosauria	ANCESTRAL SPECIES	81	ENSGT00390000002121	ENSGT00900000141021.b.b.d	ENSGT00940000163101	ENSGT00940000159327	ENSGT00530000063646.b	ENSGT01030000234638.b.a.a	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.b.a.a.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000165414	ENSGT00950000183047.c.a
Episquamata	ANCESTRAL SPECIES	6	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000165414	ENSGT00950000183047.c.a
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000156051	ENSGT00940000173726	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000165414
Elapidae	ANCESTRAL SPECIES	21	ENSGT00940000160550	ENSGT00940000159869.a	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700.f	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a.k	ENSGT00940000154394.b.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b.qb.a	ENSGT00940000154063.C.a.b.pb	ENSGT00940000165414
Elapidae_a	ANCESTRAL SPECIES	23	ENSGT00940000159869.a	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700.f	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a.k	ENSGT00940000154394.b.a.a.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b.qb.a
Acanthophiinae	ANCESTRAL SPECIES	23	ENSGT00940000159869.a	ENSGT00390000013443.c	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00960000192617	ENSGT00940000157700.f	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a.k	ENSGT00940000154394.b.a.a.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b.qb.a
Eastern brown snake	MODERN SPECIES	52	CDC37 (ENSPTXG00000004068)	PDE4A (ENSPTXG00000004066)	KEAP1 (ENSPTXG00000004065)	SPC24 (ENSPTXG00000004063)	MAST1 (ENSPTXG00000004059)	ENSPTXG00000004057	ENSPTXG00000004054	YJU2B (ENSPTXG00000004050)	C19orf53 (ENSPTXG00000004048)	ZSWIM4 (ENSPTXG00000004034)	NANOS3 (ENSPTXG00000004029)	CC2D1A (ENSPTXG00000004028)	PODNL1 (ENSPTXG00000004027)	DCAF15 (ENSPTXG00000004026)	RFX1 (ENSPTXG00000004025)	RLN3 (ENSPTXG00000003968) ##22	ENSPTXG00000003932	CLPP (ENSPTXG00000003924)	PSPN (ENSPTXG00000006836)	ALKBH7 (ENSPTXG00000006835)	GTF2F1 (ENSPTXG00000006834)	ENSPTXG00000006833	KHSRP (ENSPTXG00000006832)	SLC25A23 (ENSPTXG00000006831)	CRB3 (ENSPTXG00000006829)	ENSPTXG00000006828	ENSPTXG00000006827	ENSPTXG00000006826	TNFSF14 (ENSPTXG00000006825)
Mainland tiger snake	MODERN SPECIES	167		PDE4A (ENSNSUG00000012535)	KEAP1 (ENSNSUG00000013264)	ENSNSUG00000013265	MAST1 (ENSNSUG00000013266)	ENSNSUG00000013267	ENSNSUG00000013268	YJU2B (ENSNSUG00000013269)	C19orf53 (ENSNSUG00000013270)	ENSNSUG00000013271	NANOS3 (ENSNSUG00000013277)	CC2D1A (ENSNSUG00000013279)	PODNL1 (ENSNSUG00000013309)	DCAF15 (ENSNSUG00000013311)	RFX1 (ENSNSUG00000013312)	RLN3 (ENSNSUG00000013313) ##22	ENSNSUG00000013319	ENSNSUG00000013321	CLPP (ENSNSUG00000013322)	ALKBH7 (ENSNSUG00000013323)	PSPN (ENSNSUG00000013324)	GTF2F1 (ENSNSUG00000013325)	ENSNSUG00000013327	KHSRP (ENSNSUG00000013328)	SLC25A23 (ENSNSUG00000013332)	CRB3 (ENSNSUG00000013333)	ENSNSUG00000013334	ENSNSUG00000013335	ENSNSUG00000013337	TNFSF14 (ENSNSUG00000013338)	ENSNSUG00000013339
Blue-lipped sea krait	MODERN SPECIES	10491																RLN3 (ENSLLTG00000008791) ##22
Indian cobra	MODERN SPECIES	1	CDC37 (ENSNNAG00000018973)	PDE4A (ENSNNAG00000018976)	KEAP1 (ENSNNAG00000018979)	ENSNNAG00000018981	ENSNNAG00000018984	ENSNNAG00000018987	ENSNNAG00000018988	ENSNNAG00000018990	YJU2B (ENSNNAG00000018993)	C19orf53 (ENSNNAG00000018996)	ZSWIM4 (ENSNNAG00000018999)	CC2D1A (ENSNNAG00000019016)	PODNL1 (ENSNNAG00000019023)	DCAF15 (ENSNNAG00000019025)	RFX1 (ENSNNAG00000019027)	RLN3 (ENSNNAG00000019028) ##22	ENSNNAG00000019030 #15	ENSNNAG00000007120	CLPP (ENSNNAG00000007375)	ALKBH7 (ENSNNAG00000007389)	PSPN (ENSNNAG00000007400)	GTF2F1 (ENSNNAG00000007411)	ENSNNAG00000007441	KHSRP (ENSNNAG00000007484)	ENSNNAG00000007536	CRB3 (ENSNNAG00000007632)	ENSNNAG00000007666	ENSNNAG00000007760	ENSNNAG00000007830	ENSNNAG00000008112	ENSNNAG00000008178
Lizard	MODERN SPECIES	1	ENSACAG00000017106	ENSACAG00000041002	ENSACAG00000017141	FARSA (ENSACAG00000017166)	ENSACAG00000040519	ENSACAG00000039335	ENSACAG00000014786	ENSACAG00000028697	ENSACAG00000017334	ENSACAG00000038237	CC2D1A (ENSACAG00000015805)	PODNL1 (ENSACAG00000015752)	ENSACAG00000041903	DCAF15 (ENSACAG00000015723)	RFX1 (ENSACAG00000015671)	RLN3 (ENSACAG00000034808) ##22	ENSACAG00000015657 #15	ENSACAG00000043208	ENSACAG00000044213	ENSACAG00000035115	ENSACAG00000015627	CLPP (ENSACAG00000015591)	ENSACAG00000015559	PSPN (ENSACAG00000015501)	ENSACAG00000040096	GTF2F1 (ENSACAG00000015503)	ENSACAG00000015548	KHSRP (ENSACAG00000015398)	SLC25A23 (ENSACAG00000015342)	ENSACAG00000015247	ENSACAG00000036871
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000159788.b	ENSGT00940000159543	ENSGT00390000005584	ENSGT00960000192617	ENSGT00940000157700	ENSGT00940000164623.C	ENSGT00940000164108.a	ENSGT00530000063615.b	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000159428	ENSGT00950000183101.a.b.a	ENSGT00940000154394.b.a.a.a.a.b	ENSGT00940000164486	ENSGT01060000248544.a.a.b.a.a	ENSGT00940000154063.C.a.b	ENSGT00940000165414	ENSGT00950000183047.c.a
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	8	PDE4A (ENSPMRG00000023910)	KEAP1 (ENSPMRG00000023908)	SPC24 (ENSPMRG00000023907)	MAST1 (ENSPMRG00000023904)	ENSPMRG00000023902	ENSPMRG00000023901	ENSPMRG00000023900	YJU2B (ENSPMRG00000023899)	C19orf53 (ENSPMRG00000023898)	ZSWIM4 (ENSPMRG00000023897)	NANOS3 (ENSPMRG00000023896)	CC2D1A (ENSPMRG00000023894)	PODNL1 (ENSPMRG00000023893)	DCAF15 (ENSPMRG00000023890)	RFX1 (ENSPMRG00000023885)	ENSPMRG00000023881 ##22	ENSPMRG00000023879 ##22	ENSPMRG00000023878	CLPP (ENSPMRG00000023877)	ALKBH7 (ENSPMRG00000023875)	PSPN (ENSPMRG00000023874)	GTF2F1 (ENSPMRG00000023873)	ENSPMRG00000023872	ENSPMRG00000023871	ENSPMRG00000023870	ENSPMRG00000023869	ENSPMRG00000023868	SLC25A23 (ENSPMRG00000023867)	ENSPMRG00000023866	ENSPMRG00000023865	ENSPMRG00000023864
Common wall lizard	MODERN SPECIES	8	KEAP1 (ENSPMRG00000023908)	SPC24 (ENSPMRG00000023907)	MAST1 (ENSPMRG00000023904)	ENSPMRG00000023902	ENSPMRG00000023901	ENSPMRG00000023900	YJU2B (ENSPMRG00000023899)	C19orf53 (ENSPMRG00000023898)	ZSWIM4 (ENSPMRG00000023897)	NANOS3 (ENSPMRG00000023896)	CC2D1A (ENSPMRG00000023894)	PODNL1 (ENSPMRG00000023893)	DCAF15 (ENSPMRG00000023890)	RFX1 (ENSPMRG00000023885)	ENSPMRG00000023881 ##22	ENSPMRG00000023879 ##22	ENSPMRG00000023878	CLPP (ENSPMRG00000023877)	ALKBH7 (ENSPMRG00000023875)	PSPN (ENSPMRG00000023874)	GTF2F1 (ENSPMRG00000023873)	ENSPMRG00000023872	ENSPMRG00000023871	ENSPMRG00000023870	ENSPMRG00000023869	ENSPMRG00000023868	SLC25A23 (ENSPMRG00000023867)	ENSPMRG00000023866	ENSPMRG00000023865	ENSPMRG00000023864	ENSPMRG00000023863
Argentine black and white tegu	MODERN SPECIES	85	KEAP1 (ENSSMRG00000016807)	ENSSMRG00000016809	MAST1 (ENSSMRG00000016813)	ENSSMRG00000016824	ENSSMRG00000016825	ENSSMRG00000016826	YJU2B (ENSSMRG00000016828)	C19orf53 (ENSSMRG00000016829)	ZSWIM4 (ENSSMRG00000016830)	NANOS3 (ENSSMRG00000016836)	CC2D1A (ENSSMRG00000016838)	PODNL1 (ENSSMRG00000017021)	ENSSMRG00000017032	DCAF15 (ENSSMRG00000017041)	RFX1 (ENSSMRG00000017045)	RLN3 (ENSSMRG00000017065) ##22	ENSSMRG00000017066 #15	ENSSMRG00000017068	ENSSMRG00000017070	CLPP (ENSSMRG00000017071)	ALKBH7 (ENSSMRG00000017074)	PSPN (ENSSMRG00000017075)	GTF2F1 (ENSSMRG00000017079)	ENSSMRG00000017080	KHSRP (ENSSMRG00000017081)	SLC25A23 (ENSSMRG00000017083)	CRB3 (ENSSMRG00000017085)	ENSSMRG00000017088	ENSSMRG00000017091	ENSSMRG00000017093	TNFSF14 (ENSSMRG00000017096)
Archelosauria	ANCESTRAL SPECIES	28	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000167422	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT01030000234559.a.a.b.a	ENSGT00940000166147	ENSGT00390000009916	ENSGT00940000154990
Cryptodira	ANCESTRAL SPECIES	45	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000164506	ENSGT00940000159313	ENSGT00940000161012	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541	ENSGT00390000010157.b
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000164506	ENSGT00940000159313	ENSGT00940000161012.a	ENSGT00940000161012.b.b	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541
Testudinidae	ANCESTRAL SPECIES	41	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00940000159829 #15	ENSGT00520000055591.a #13	ENSGT00950000182964.a.a #12	ENSGT01100000263497.E.b	ENSGT00390000005897.d #9	ENSGT00390000005897.c #9	ENSGT00940000164186.a	ENSGT00950000182913.B #8	ENSGT00950000182976.b.a #7	ENSGT00940000156262	ENSGT00940000156968	ENSGT00730000110872.b.c.a	ENSGT00910000148470	ENSGT00730000110872.b.d	ENSGT00950000182928.B.d.b
Abingdon island giant tortoise	MODERN SPECIES	727	ENSCABG00000004079	ENSCABG00000004084	ENSCABG00000004094	ENSCABG00000004100	ENSCABG00000004105	YJU2B (ENSCABG00000004109)	MRI1 (ENSCABG00000004149)	ENSCABG00000004150	ZSWIM4 (ENSCABG00000004152)	NANOS3 (ENSCABG00000004162)	CC2D1A (ENSCABG00000004166)	PODNL1 (ENSCABG00000004175)	ENSCABG00000004181	DCAF15 (ENSCABG00000004186)	RFX1 (ENSCABG00000004196)	RLN3 (ENSCABG00000004208) ##22	ENSCABG00000004209 #15	ENSCABG00000004216	CLPP (ENSCABG00000004220)	ALKBH7 (ENSCABG00000004236)	PSPN (ENSCABG00000004239)	GTF2F1 (ENSCABG00000004243)	ENSCABG00000004276	KHSRP (ENSCABG00000004282)	ENSCABG00000004297	ENSCABG00000004298	ENSCABG00000004305	ENSCABG00000004307	ENSCABG00000004309	ENSCABG00000004311	ENSCABG00000004312
Goode s thornscrub tortoise	MODERN SPECIES	152	ENSGEVG00005016432	ENSGEVG00005016394	ENSGEVG00005016311	ENSGEVG00005016258	YJU2B (ENSGEVG00005016237)	ENSGEVG00005016207	ENSGEVG00005016117	ZSWIM4 (ENSGEVG00005016081)	NANOS3 (ENSGEVG00005016038)	CC2D1A (ENSGEVG00005015986)	ENSGEVG00005015952	PODNL1 (ENSGEVG00005015827)	ENSGEVG00005015785	DCAF15 (ENSGEVG00005015747)	RFX1 (ENSGEVG00005015668)	RLN3 (ENSGEVG00005015644) ##22	ENSGEVG00005015561 #15	ENSGEVG00005015467	CLPP (ENSGEVG00005015438)	ENSGEVG00005015422	ALKBH7 (ENSGEVG00005015413)	PSPN (ENSGEVG00005015375)	GTF2F1 (ENSGEVG00005014890)	ENSGEVG00005014840	KHSRP (ENSGEVG00005014355)	ENSGEVG00005014207	DOCK6 (ENSGEVG00005013294)	KANK2 (ENSGEVG00005013171)	LDLR (ENSGEVG00005013119)	SMARCA4 (ENSGEVG00005013014)	TIMM29 (ENSGEVG00005012977)
Emydidae	ANCESTRAL SPECIES	48	ENSGT01030000234638.b.a.a	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b.d	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00990000205655	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000005830	ENSGT00390000014585	ENSGT00950000182993.B.b	ENSGT00440000038032	ENSGT00940000163693	ENSGT00940000156051	ENSGT00940000164506	ENSGT00940000159313	ENSGT00940000161012.b.a	ENSGT00940000161046	ENSGT00940000156887	ENSGT00390000018541	ENSGT00390000010157.b
painted turtle	MODERN SPECIES	2403	MAN2B1 (ENSCPBG00000023871)	TRMT1 (ENSCPBG00000023866)	NACC1 (ENSCPBG00000023862)	STX10 (ENSCPBG00000023860)	IER2 (ENSCPBG00000023859)	CACNA1A (ENSCPBG00000023849)	ENSCPBG00000023837	YJU2B (ENSCPBG00000023832)	ENSCPBG00000023829	ZSWIM4 (ENSCPBG00000023828)	NANOS3 (ENSCPBG00000023819)	CC2D1A (ENSCPBG00000023818)	PODNL1 (ENSCPBG00000023814)	DCAF15 (ENSCPBG00000023812)	RFX1 (ENSCPBG00000023811)	RLN3 (ENSCPBG00000023809) ##22	ENSCPBG00000023805 #15	ENSCPBG00000023801
Three-toed box turtle	MODERN SPECIES	382	ENSTMTG00000018786	WDR83 (ENSTMTG00000018797)	WDR83OS (ENSTMTG00000018813)	MAN2B1 (ENSTMTG00000018824)	TRMT1 (ENSTMTG00000018872)	NACC1 (ENSTMTG00000018902)	CACNA1A (ENSTMTG00000019100)	ENSTMTG00000020857	YJU2B (ENSTMTG00000020864)	MRI1 (ENSTMTG00000020868)	ENSTMTG00000020875	NANOS3 (ENSTMTG00000020886)	CC2D1A (ENSTMTG00000020919)	DCAF15 (ENSTMTG00000021152)	RFX1 (ENSTMTG00000021207)	RLN3 (ENSTMTG00000021380) ##22	ENSTMTG00000021394	ENSTMTG00000021405	ENSTMTG00000021407	ALKBH7 (ENSTMTG00000021414)	PSPN (ENSTMTG00000021420)	GTF2F1 (ENSTMTG00000021428)	ENSTMTG00000021440	KHSRP (ENSTMTG00000021461)	ENSTMTG00000021479	DOCK6 (ENSTMTG00000021579)	ENSTMTG00000022102	ENSTMTG00000022110	ENSTMTG00000022117	LDLR (ENSTMTG00000022131)	SMARCA4 (ENSTMTG00000022193)
Chinese turtle	MODERN SPECIES	343												CC2D1A (ENSPSIG00000014965)	ENSPSIG00000015794	DCAF15 (ENSPSIG00000015945)	RFX1 (ENSPSIG00000016113)	RLN3 (ENSPSIG00000016585) ##22	ENSPSIG00000016734 #15	CLPP (ENSPSIG00000006977)	ALKBH7 (ENSPSIG00000007204)	PSPN (ENSPSIG00000000151)	GTF2F1 (ENSPSIG00000007557)	ENSPSIG00000008162	KHSRP (ENSPSIG00000008244)
Mammalia	ANCESTRAL SPECIES	42	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00390000018038	ENSGT00530000064123	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Theria	ANCESTRAL SPECIES	29	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Opossum	MODERN SPECIES	2	TRMT1 (ENSMODG00000011619)	ENSMODG00000011626	IER2 (ENSMODG00000023954)	CACNA1A (ENSMODG00000011749)	ENSMODG00000011755	YJU2B (ENSMODG00000011863)	MRI1 (ENSMODG00000011870)	C19orf53 (ENSMODG00000011876)	ZSWIM4 (ENSMODG00000011902)	ENSMODG00000023964	ENSMODG00000050577	CC2D1A (ENSMODG00000011949)	PODNL1 (ENSMODG00000011977)	ENSMODG00000012004	RFX1 (ENSMODG00000012044)	RLN3 (ENSMODG00000038451) ##22	ENSMODG00000012066	ENSMODG00000041791	C19orf67 (ENSMODG00000012075)	SAMD1 (ENSMODG00000011961)	PRKACA (ENSMODG00000012087)	ASF1B (ENSMODG00000012099)	ENSMODG00000048905	ADGRL1 (ENSMODG00000012145)	ADGRE5 (ENSMODG00000002432)	DDX39A (ENSMODG00000002448)	PKN1 (ENSMODG00000002524)	PTGER1 (ENSMODG00000002532)	GIPC1 (ENSMODG00000002551)	DNAJB1 (ENSMODG00000045899)	TECR (ENSMODG00000002590)
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT01050000246822	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT01050000246822	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b.q
koala	MODERN SPECIES	58	TRMT1 (ENSPCIG00000019273)	NACC1 (ENSPCIG00000019270)	IER2 (ENSPCIG00000019269)	CACNA1A (ENSPCIG00000019267)	ENSPCIG00000019264	YJU2B (ENSPCIG00000019033)	MRI1 (ENSPCIG00000019032)	C19orf53 (ENSPCIG00000019031)	ZSWIM4 (ENSPCIG00000019028)	ENSPCIG00000033468	ENSPCIG00000018374	CC2D1A (ENSPCIG00000029766)	PODNL1 (ENSPCIG00000029767)	DCAF15 (ENSPCIG00000029768)	RFX1 (ENSPCIG00000029769)	RLN3 (ENSPCIG00000005101) ##22	ENSPCIG00000029770	ENSPCIG00000029772	ENSPCIG00000029773	C19orf67 (ENSPCIG00000033975)	ENSPCIG00000029775	ENSPCIG00000029776	ASF1B (ENSPCIG00000029777)	ADGRL1 (ENSPCIG00000029778)
Common wonbat	MODERN SPECIES	580	TRMT1 (ENSVURG00010012721)	NACC1 (ENSVURG00010012733)	ENSVURG00010012740	CACNA1A (ENSVURG00010013847)	ENSVURG00010024168	ENSVURG00010024170	MRI1 (ENSVURG00010024173)	C19orf53 (ENSVURG00010024176)	ZSWIM4 (ENSVURG00010024179)	ENSVURG00010024197	ENSVURG00010024198	CC2D1A (ENSVURG00010024206)	PODNL1 (ENSVURG00010024211)	DCAF15 (ENSVURG00010024215)	RFX1 (ENSVURG00010024218)	RLN3 (ENSVURG00010024221) ##22	ENSVURG00010024222	ENSVURG00010024226	ENSVURG00010024229	C19orf67 (ENSVURG00010024230)	SAMD1 (ENSVURG00010024236)	ENSVURG00010024240	ASF1B (ENSVURG00010024248)	ADGRL1 (ENSVURG00010024253)	ENSVURG00010024260	DDX39A (ENSVURG00010024264)	PKN1 (ENSVURG00010024275)	PTGER1 (ENSVURG00010024284)	GIPC1 (ENSVURG00010024287)	DNAJB1 (ENSVURG00010024288)	ENSVURG00010024291
Wallaby	MODERN SPECIES	1427															RFX1 (ENSMEUG00000009014)	RLN3 (ENSMEUG00000009042) ##22	ENSMEUG00000009051
Tasmanian devil	MODERN SPECIES		ENSSHAG00000030868	TRMT1 (ENSSHAG00000014381)	IER2 (ENSSHAG00000022046)	CACNA1A (ENSSHAG00000013591)	ENSSHAG00000031108	YJU2B (ENSSHAG00000011586)	MRI1 (ENSSHAG00000011531)	C19orf53 (ENSSHAG00000027685)	ZSWIM4 (ENSSHAG00000011275)	ENSSHAG00000026160	ENSSHAG00000021049	CC2D1A (ENSSHAG00000010380)	PODNL1 (ENSSHAG00000010334)	DCAF15 (ENSSHAG00000010157)	RFX1 (ENSSHAG00000009998)	ENSSHAG00000025486 ##22	ENSSHAG00000009701	ENSSHAG00000009514	ENSSHAG00000023995	C19orf67 (ENSSHAG00000027453)	ENSSHAG00000024156	ENSSHAG00000009246	ASF1B (ENSSHAG00000009083)	ADGRL1 (ENSSHAG00000008368)	ADGRE5 (ENSSHAG00000005642)	DDX39A (ENSSHAG00000005494)	PKN1 (ENSSHAG00000004829)	PTGER1 (ENSSHAG00000029759)	GIPC1 (ENSSHAG00000004295)	DNAJB1 (ENSSHAG00000003951)	TECR (ENSSHAG00000001027)
Eutheria	ANCESTRAL SPECIES	27	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Primates	ANCESTRAL SPECIES	18	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Bushbaby	MODERN SPECIES	242	NACC1 (ENSOGAG00000031864)	STX10 (ENSOGAG00000025310)	IER2 (ENSOGAG00000032686)	CACNA1A (ENSOGAG00000001691)	ENSOGAG00000033117	YJU2B (ENSOGAG00000001102)	MRI1 (ENSOGAG00000007183)	C19orf53 (ENSOGAG00000007185)	ZSWIM4 (ENSOGAG00000007186)	NANOS3 (ENSOGAG00000007190)	BRME1 (ENSOGAG00000027547)	CC2D1A (ENSOGAG00000007192)	PODNL1 (ENSOGAG00000007200)	DCAF15 (ENSOGAG00000026882)	RFX1 (ENSOGAG00000007203)	RLN3 (ENSOGAG00000002457) ##22	IL27RA (ENSOGAG00000002458)	PALM3 (ENSOGAG00000031926)	MISP3 (ENSOGAG00000002460)	C19orf67 (ENSOGAG00000002463)	SAMD1 (ENSOGAG00000032909)	PRKACA (ENSOGAG00000011842)	ASF1B (ENSOGAG00000005034)	ADGRL1 (ENSOGAG00000005032)	ADGRE5 (ENSOGAG00000010273)	ENSOGAG00000010280	PKN1 (ENSOGAG00000010285)	PTGER1 (ENSOGAG00000033700)	GIPC1 (ENSOGAG00000014019)	DNAJB1 (ENSOGAG00000014022)	TECR (ENSOGAG00000024886)
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Mouse lemur	MODERN SPECIES	16	UNC13A (ENSMICG00000036952)	COLGALT1 (ENSMICG00000037557)	NIBAN3 (ENSMICG00000045861)	PGLS (ENSMICG00000037868)	SLC27A1 (ENSMICG00000003391)	MVB12A (ENSMICG00000043858)	CCDC194 (ENSMICG00000045403)	ENSMICG00000033146	ZSWIM4 (ENSMICG00000037649)	NANOS3 (ENSMICG00000030950)	BRME1 (ENSMICG00000013478)	CC2D1A (ENSMICG00000013491)	PODNL1 (ENSMICG00000027429)	DCAF15 (ENSMICG00000012026)	RFX1 (ENSMICG00000012036)	RLN3 (ENSMICG00000035223) ##22	IL27RA (ENSMICG00000003469)	MISP3 (ENSMICG00000046673)	C19orf67 (ENSMICG00000008731)	SAMD1 (ENSMICG00000030168)	PRKACA (ENSMICG00000036023)	ASF1B (ENSMICG00000000574)	ADGRL1 (ENSMICG00000027529)	ENSMICG00000032629	ENSMICG00000046227	DDX39A (ENSMICG00000015325)	PKN1 (ENSMICG00000035009)	PTGER1 (ENSMICG00000045048)	GIPC1 (ENSMICG00000004336)	DNAJB1 (ENSMICG00000047161)	TECR (ENSMICG00000009818)
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Greater bamboo lemur	MODERN SPECIES	1098	NACC1 (ENSPSMG00000004448)	STX10 (ENSPSMG00000004413)	IER2 (ENSPSMG00000004370)	CACNA1A (ENSPSMG00000002497)	ENSPSMG00000001179	YJU2B (ENSPSMG00000001159)	MRI1 (ENSPSMG00000001122)	C19orf53 (ENSPSMG00000001107)	ZSWIM4 (ENSPSMG00000001098)	NANOS3 (ENSPSMG00000001065)	BRME1 (ENSPSMG00000001047)	CC2D1A (ENSPSMG00000000896)	PODNL1 (ENSPSMG00000000734)	DCAF15 (ENSPSMG00000000694)	RFX1 (ENSPSMG00000000677)	RLN3 (ENSPSMG00000000667) ##22	IL27RA (ENSPSMG00000000656)	PALM3 (ENSPSMG00000000637)	MISP3 (ENSPSMG00000000627)	C19orf67 (ENSPSMG00000000620)	ENSPSMG00000000615	PRKACA (ENSPSMG00000000531)	ASF1B (ENSPSMG00000000448)	ENSPSMG00000000417	ADGRL1 (ENSPSMG00000000369)
Coquerels sifaka	MODERN SPECIES	226	TRMT1 (ENSPCOG00000008653)	NACC1 (ENSPCOG00000028443)	STX10 (ENSPCOG00000027677)	CACNA1A (ENSPCOG00000017466)	ENSPCOG00000024786	YJU2B (ENSPCOG00000014499)	MRI1 (ENSPCOG00000021500)	C19orf53 (ENSPCOG00000014098)	ZSWIM4 (ENSPCOG00000024403)	NANOS3 (ENSPCOG00000018814)	BRME1 (ENSPCOG00000010238)	CC2D1A (ENSPCOG00000016820)	PODNL1 (ENSPCOG00000007369)	DCAF15 (ENSPCOG00000016926)	RFX1 (ENSPCOG00000021114)	RLN3 (ENSPCOG00000022698) ##22	IL27RA (ENSPCOG00000022860)	PALM3 (ENSPCOG00000024665)	MISP3 (ENSPCOG00000015918)	C19orf67 (ENSPCOG00000023801)	SAMD1 (ENSPCOG00000016370)	PRKACA (ENSPCOG00000027066)	ASF1B (ENSPCOG00000001102)	ADGRL1 (ENSPCOG00000025675)	ADGRE5 (ENSPCOG00000020208)	ENSPCOG00000024047	ENSPCOG00000018928	PKN1 (ENSPCOG00000023124)	PTGER1 (ENSPCOG00000016929)	GIPC1 (ENSPCOG00000019419)	DNAJB1 (ENSPCOG00000018620)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Tarsier	MODERN SPECIES	2053															RFX1 (ENSTSYG00000028449)	RLN3 (ENSTSYG00000026515) ##22
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912.e	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Cebidae	ANCESTRAL SPECIES	20	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a.c.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912.e	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732.m	ENSGT00390000011740.o.a.c.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912.e	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Capuchin	MODERN SPECIES	234	TRMT1 (ENSCCAG00000022263)	NACC1 (ENSCCAG00000033562)	STX10 (ENSCCAG00000035795)	CACNA1A (ENSCCAG00000025667)	ENSCCAG00000005128	YJU2B (ENSCCAG00000022524)	MRI1 (ENSCCAG00000014292)	ENSCCAG00000036550	ZSWIM4 (ENSCCAG00000014810)	NANOS3 (ENSCCAG00000036253)	BRME1 (ENSCCAG00000033537)	CC2D1A (ENSCCAG00000028774)	PODNL1 (ENSCCAG00000034546)	ENSCCAG00000020314	RFX1 (ENSCCAG00000037933)	RLN3 (ENSCCAG00000034851) ##22	IL27RA (ENSCCAG00000025599)	PALM3 (ENSCCAG00000030648)	MISP3 (ENSCCAG00000021278)	C19orf67 (ENSCCAG00000036582)	SAMD1 (ENSCCAG00000036021)	PRKACA (ENSCCAG00000034581)	ASF1B (ENSCCAG00000013180)	ADGRL1 (ENSCCAG00000032871)	ADGRE5 (ENSCCAG00000037285)	DDX39A (ENSCCAG00000034932)	PKN1 (ENSCCAG00000024115)	PTGER1 (ENSCCAG00000024809)	GIPC1 (ENSCCAG00000030796)	DNAJB1 (ENSCCAG00000003556)
Bolivian squirrel monkey	MODERN SPECIES	192	TRMT1 (ENSSBOG00000028861)	NACC1 (ENSSBOG00000029763)	STX10 (ENSSBOG00000028486)	CACNA1A (ENSSBOG00000024258)	ENSSBOG00000028928	YJU2B (ENSSBOG00000022718)	ENSSBOG00000034840	C19orf53 (ENSSBOG00000024373)	ZSWIM4 (ENSSBOG00000010394)	NANOS3 (ENSSBOG00000020970)	BRME1 (ENSSBOG00000005665)	CC2D1A (ENSSBOG00000030926)	PODNL1 (ENSSBOG00000016931)	DCAF15 (ENSSBOG00000028396)	RFX1 (ENSSBOG00000022420)	RLN3 (ENSSBOG00000034704) ##22	IL27RA (ENSSBOG00000034131)	PALM3 (ENSSBOG00000029866)	ENSSBOG00000032680	ENSSBOG00000031891	ENSSBOG00000029114	PRKACA (ENSSBOG00000028189)	ASF1B (ENSSBOG00000023101)	ADGRL1 (ENSSBOG00000032464)	ADGRE5 (ENSSBOG00000000810)	DDX39A (ENSSBOG00000034939)	PKN1 (ENSSBOG00000030578)	ENSSBOG00000026379	GIPC1 (ENSSBOG00000021931)	DNAJB1 (ENSSBOG00000032537)	ENSSBOG00000029630
Marmoset	MODERN SPECIES	14	TRMT1 (ENSCJAG00000004566)	NACC1 (ENSCJAG00000043018)	STX10 (ENSCJAG00000004519)	IER2 (ENSCJAG00000045878)	CACNA1A (ENSCJAG00000004458)	YJU2B (ENSCJAG00000004443)	MRI1 (ENSCJAG00000044187)	ENSCJAG00000083863	ZSWIM4 (ENSCJAG00000004397)	NANOS3 (ENSCJAG00000004388)	ENSCJAG00000004372	CC2D1A (ENSCJAG00000004333)	PODNL1 (ENSCJAG00000004297)	DCAF15 (ENSCJAG00000005014)	RFX1 (ENSCJAG00000004970)	RLN3 (ENSCJAG00000004965) ##22	IL27RA (ENSCJAG00000004940)	PALM3 (ENSCJAG00000004935)	MISP3 (ENSCJAG00000004926)	C19orf67 (ENSCJAG00000004924)	SAMD1 (ENSCJAG00000035248)	PRKACA (ENSCJAG00000004906)	ASF1B (ENSCJAG00000004898)	ADGRL1 (ENSCJAG00000004850)	ADGRE5 (ENSCJAG00000054003)	DDX39A (ENSCJAG00000004760)	PKN1 (ENSCJAG00000004713)	PTGER1 (ENSCJAG00000004706)	GIPC1 (ENSCJAG00000004679)	DNAJB1 (ENSCJAG00000004666)	TECR (ENSCJAG00000004626)
Mas night monkey	MODERN SPECIES	251				CACNA1A (ENSANAG00000024174)	ENSANAG00000030087	YJU2B (ENSANAG00000001642)	ENSANAG00000020896	ENSANAG00000033248	ZSWIM4 (ENSANAG00000032728)	NANOS3 (ENSANAG00000025042)	BRME1 (ENSANAG00000034942)	CC2D1A (ENSANAG00000024276)	PODNL1 (ENSANAG00000033018)	DCAF15 (ENSANAG00000026170)	RFX1 (ENSANAG00000022687)	RLN3 (ENSANAG00000028354) ##22	IL27RA (ENSANAG00000028857)	ENSANAG00000027531	ENSANAG00000028790	C19orf67 (ENSANAG00000021995)	SAMD1 (ENSANAG00000036958)	PRKACA (ENSANAG00000024197)	ASF1B (ENSANAG00000034025)	ADGRL1 (ENSANAG00000034947)	ADGRE5 (ENSANAG00000033446)	ENSANAG00000036829	PKN1 (ENSANAG00000030511)	PTGER1 (ENSANAG00000034925)	GIPC1 (ENSANAG00000032969)	DNAJB1 (ENSANAG00000031367)	TECR (ENSANAG00000030591)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.p
Hominidae	ANCESTRAL SPECIES		ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.p
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.o.b
Gorilla	MODERN SPECIES	10	NACC1 (ENSGGOG00000022388)	STX10 (ENSGGOG00000009480)	IER2 (ENSGGOG00000043951)	ENSGGOG00000008660	ENSGGOG00000042836	YJU2B (ENSGGOG00000006623)	MRI1 (ENSGGOG00000006628)	C19orf53 (ENSGGOG00000027024)	ENSGGOG00000011452	NANOS3 (ENSGGOG00000000964)	BRME1 (ENSGGOG00000000965)	CC2D1A (ENSGGOG00000004396)	PODNL1 (ENSGGOG00000004407)	DCAF15 (ENSGGOG00000000384)	RFX1 (ENSGGOG00000000385)	RLN3 (ENSGGOG00000042442) ##22	IL27RA (ENSGGOG00000011506)	PALM3 (ENSGGOG00000023236)	ENSGGOG00000002337	C19orf67 (ENSGGOG00000002339)	PRKACA (ENSGGOG00000013294)	ASF1B (ENSGGOG00000013302)	ADGRL1 (ENSGGOG00000015214)	ADGRE5 (ENSGGOG00000005405)	DDX39A (ENSGGOG00000005414)	PKN1 (ENSGGOG00000015787)	PTGER1 (ENSGGOG00000023671)	GIPC1 (ENSGGOG00000012043)	DNAJB1 (ENSGGOG00000024610)	ENSGGOG00000037664	CLEC17A (ENSGGOG00000013092)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.o.b
Pan	ANCESTRAL SPECIES	14	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.o.b
Chimpanzee	MODERN SPECIES	10	NACC1 (ENSPTRG00000010558)	STX10 (ENSPTRG00000010559)	IER2 (ENSPTRG00000049474)	CACNA1A (ENSPTRG00000010561)	ENSPTRG00000047800	YJU2B (ENSPTRG00000010562)	MRI1 (ENSPTRG00000010563)	C19H19orf53 (ENSPTRG00000010565)	ZSWIM4 (ENSPTRG00000010567)	NANOS3 (ENSPTRG00000010568)	BRME1 (ENSPTRG00000010569)	CC2D1A (ENSPTRG00000010571)	PODNL1 (ENSPTRG00000010572)	DCAF15 (ENSPTRG00000010573)	RFX1 (ENSPTRG00000010574)	RLN3 (ENSPTRG00000010576) ##22	IL27RA (ENSPTRG00000010578)	PALM3 (ENSPTRG00000010579)	ENSPTRG00000010581	C19H19orf67 (ENSPTRG00000010582)	SAMD1 (ENSPTRG00000010583)	PRKACA (ENSPTRG00000010585)	ASF1B (ENSPTRG00000010586)	ADGRL1 (ENSPTRG00000010588)	ENSPTRG00000050521	ADGRE5 (ENSPTRG00000010589)	DDX39A (ENSPTRG00000010590)	PKN1 (ENSPTRG00000010591)	PTGER1 (ENSPTRG00000045625)	GIPC1 (ENSPTRG00000010593)	DNAJB1 (ENSPTRG00000010594)
Bonobo	MODERN SPECIES	10	NACC1 (ENSPPAG00000033614)	STX10 (ENSPPAG00000042146)	IER2 (ENSPPAG00000008761)	CACNA1A (ENSPPAG00000017516)	ENSPPAG00000033516	YJU2B (ENSPPAG00000028983)	MRI1 (ENSPPAG00000033346)	C19orf53 (ENSPPAG00000039375)	ZSWIM4 (ENSPPAG00000025698)	NANOS3 (ENSPPAG00000032168)	BRME1 (ENSPPAG00000041052)	ENSPPAG00000013237	PODNL1 (ENSPPAG00000017952)	DCAF15 (ENSPPAG00000042487)	RFX1 (ENSPPAG00000029817)	RLN3 (ENSPPAG00000022669) ##22	IL27RA (ENSPPAG00000037229)	PALM3 (ENSPPAG00000039534)	ENSPPAG00000021210	C19orf67 (ENSPPAG00000038468)	ENSPPAG00000029269	PRKACA (ENSPPAG00000014020)	ASF1B (ENSPPAG00000024377)	ADGRL1 (ENSPPAG00000024209)	ADGRE5 (ENSPPAG00000043912)	DDX39A (ENSPPAG00000040065)	PKN1 (ENSPPAG00000039292)	GIPC1 (ENSPPAG00000041834)	DNAJB1 (ENSPPAG00000030563)	TECR (ENSPPAG00000031488)	NDUFB7 (ENSPPAG00000043940)
Human	MODERN SPECIES	10	TRMT1 (ENSG00000104907)	NACC1 (ENSG00000160877)	STX10 (ENSG00000104915)	IER2 (ENSG00000160888)	CACNA1A (ENSG00000141837)	YJU2B (ENSG00000104957)	MRI1 (ENSG00000037757)	C19orf53 (ENSG00000104979)	ZSWIM4 (ENSG00000132003)	NANOS3 (ENSG00000187556)	BRME1 (ENSG00000132016)	CC2D1A (ENSG00000132024)	PODNL1 (ENSG00000132000)	DCAF15 (ENSG00000132017)	RFX1 (ENSG00000132005)	RLN3 (ENSG00000171136) ##22	IL27RA (ENSG00000104998)	PALM3 (ENSG00000187867)	MISP3 (ENSG00000141854)	C19orf67 (ENSG00000188032)	SAMD1 (ENSG00000141858)	PRKACA (ENSG00000072062)	SMIM46 (ENSG00000289762)	ASF1B (ENSG00000105011)	ADGRL1 (ENSG00000072071)	ADGRE5 (ENSG00000123146)	DDX39A (ENSG00000123136)	PKN1 (ENSG00000123143)	PTGER1 (ENSG00000160951)	GIPC1 (ENSG00000123159)	DNAJB1 (ENSG00000132002)
Orangutan	MODERN SPECIES	10	TRMT1 (ENSPPYG00000009622)	NACC1 (ENSPPYG00000009623)	STX10 (ENSPPYG00000009624)	IER2 (ENSPPYG00000009625)	CACNA1A (ENSPPYG00000009626)	YJU2B (ENSPPYG00000010569)	MRI1 (ENSPPYG00000010570)	C19H19orf53 (ENSPPYG00000010571)	ZSWIM4 (ENSPPYG00000039708)	NANOS3 (ENSPPYG00000009627)	BRME1 (ENSPPYG00000009628)	CC2D1A (ENSPPYG00000009629)	PODNL1 (ENSPPYG00000030919)	DCAF15 (ENSPPYG00000009630)	RFX1 (ENSPPYG00000009631)	ENSPPYG00000009632 ##22	IL27RA (ENSPPYG00000009633)	PALM3 (ENSPPYG00000009634)	ENSPPYG00000009635	C19orf67 (ENSPPYG00000009636)	ENSPPYG00000009637	PRKACA (ENSPPYG00000009638)	ENSPPYG00000009639	ENSPPYG00000009640	ENSPPYG00000009641	DDX39A (ENSPPYG00000009642)	PKN1 (ENSPPYG00000009643)	PTGER1 (ENSPPYG00000009644)	GIPC1 (ENSPPYG00000009645)	ENSPPYG00000009646	DNAJB1 (ENSPPYG00000009647)
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01050000245449	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.o.a.a.a	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.p
Black snub-nosed monkey	MODERN SPECIES	1520					ENSRBIG00000035577	YJU2B (ENSRBIG00000041995)	MRI1 (ENSRBIG00000028556)	ENSRBIG00000007721	ZSWIM4 (ENSRBIG00000037112)	NANOS3 (ENSRBIG00000037377)	ENSRBIG00000034812	CC2D1A (ENSRBIG00000016734)	PODNL1 (ENSRBIG00000042216)	DCAF15 (ENSRBIG00000036812)	RFX1 (ENSRBIG00000039951)	RLN3 (ENSRBIG00000022931) ##22	IL27RA (ENSRBIG00000030882)	PALM3 (ENSRBIG00000035709)	MISP3 (ENSRBIG00000029000)	C19orf67 (ENSRBIG00000036921)	SAMD1 (ENSRBIG00000014470)	PRKACA (ENSRBIG00000030568)	ASF1B (ENSRBIG00000031074)	ADGRL1 (ENSRBIG00000043709)	ADGRE5 (ENSRBIG00000027106)	DDX39A (ENSRBIG00000036352)	PKN1 (ENSRBIG00000037783)	PTGER1 (ENSRBIG00000039678)	GIPC1 (ENSRBIG00000032760)	DNAJB1 (ENSRBIG00000034353)	TECR (ENSRBIG00000041354)
Golden snub-nosed monkey	MODERN SPECIES	975	NACC1 (ENSRROG00000040733)	STX10 (ENSRROG00000040598)	IER2 (ENSRROG00000024202)	CACNA1A (ENSRROG00000037736)	ENSRROG00000044068	YJU2B (ENSRROG00000039770)	MRI1 (ENSRROG00000031188)	ENSRROG00000032872	ZSWIM4 (ENSRROG00000032947)	NANOS3 (ENSRROG00000032642)	BRME1 (ENSRROG00000024917)	CC2D1A (ENSRROG00000043482)	PODNL1 (ENSRROG00000036501)	DCAF15 (ENSRROG00000033775)	RFX1 (ENSRROG00000038209)	RLN3 (ENSRROG00000032423) ##22	IL27RA (ENSRROG00000036450)	PALM3 (ENSRROG00000032410)	ENSRROG00000021104	C19orf67 (ENSRROG00000045746)	SAMD1 (ENSRROG00000043288)	PRKACA (ENSRROG00000030096)	ASF1B (ENSRROG00000032473)	ADGRL1 (ENSRROG00000041016)	ADGRE5 (ENSRROG00000036165)	DDX39A (ENSRROG00000027985)	PKN1 (ENSRROG00000014720)	PTGER1 (ENSRROG00000035503)	GIPC1 (ENSRROG00000031568)	DNAJB1 (ENSRROG00000035637)	TECR (ENSRROG00000040562)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Vervet Monkey	MODERN SPECIES	25	LYL1 (ENSCSAG00000006504)	TRMT1 (ENSCSAG00000006500)	NACC1 (ENSCSAG00000006493)	STX10 (ENSCSAG00000006490)	IER2 (ENSCSAG00000018839)	CACNA1A (ENSCSAG00000006482)	YJU2B (ENSCSAG00000006473)	MRI1 (ENSCSAG00000006463)	C19orf53 (ENSCSAG00000006444)	ZSWIM4 (ENSCSAG00000006437)	NANOS3 (ENSCSAG00000006428)	BRME1 (ENSCSAG00000006425)	CC2D1A (ENSCSAG00000006407)	PODNL1 (ENSCSAG00000006396)	DCAF15 (ENSCSAG00000006394)	RLN3 (ENSCSAG00000006390) ##22	IL27RA (ENSCSAG00000006388)	PALM3 (ENSCSAG00000006381)	MISP3 (ENSCSAG00000006375)	C19orf67 (ENSCSAG00000006372)	PRKACA (ENSCSAG00000006367)	SAMD1 (ENSCSAG00000006358)	ASF1B (ENSCSAG00000006355)	ADGRL1 (ENSCSAG00000006349)	ADGRE5 (ENSCSAG00000006346)	DDX39A (ENSCSAG00000006342)	PKN1 (ENSCSAG00000006339)	PTGER1 (ENSCSAG00000006336)	GIPC1 (ENSCSAG00000006331)	DNAJB1 (ENSCSAG00000006329)	TECR (ENSCSAG00000006324)
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000162404	ENSGT00530000063646.b.v.a	ENSGT00940000159327	ENSGT00940000163101	ENSGT00940000156518.C	ENSGT01100000263539.b.a.a.a.a.a.a.a.a.a.a.a.a	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e	ENSGT00950000182886.a.a.b.p
Crab-eating macaque	MODERN SPECIES	10	LYL1 (ENSMFAG00000032986)	TRMT1 (ENSMFAG00000033143)	ENSMFAG00000047628	NACC1 (ENSMFAG00000036952)	STX10 (ENSMFAG00000039740)	CACNA1A (ENSMFAG00000040043)	ENSMFAG00000053174	ENSMFAG00000064308	ENSMFAG00000055985 ##37	YJU2B (ENSMFAG00000038616)	MRI1 (ENSMFAG00000044250)	ZSWIM4 (ENSMFAG00000041230)	NANOS3 (ENSMFAG00000040009)	BRME1 (ENSMFAG00000036981)	CC2D1A (ENSMFAG00000043969)	RLN3 (ENSMFAG00000000848) ##22	IL27RA (ENSMFAG00000038013)	MISP3 (ENSMFAG00000030676)	C19orf67 (ENSMFAG00000042255)	ENSMFAG00000001195	PRKACA (ENSMFAG00000004590)	ASF1B (ENSMFAG00000044347)	ADGRE5 (ENSMFAG00000000614)	DDX39A (ENSMFAG00000044174)	PKN1 (ENSMFAG00000003990)	ENSMFAG00000059444	GIPC1 (ENSMFAG00000042501)	DNAJB1 (ENSMFAG00000042314)	CALR3 (ENSMFAG00000049437)	NDUFB7 (ENSMFAG00000043529)	CLEC17A (ENSMFAG00000043558)
Rhesus	MODERN SPECIES	10	NACC1 (ENSMMUG00000017971)	STX10 (ENSMMUG00000011427)	CACNA1A (ENSMMUG00000003555)	ENSMMUG00000054395	ENSMMUG00000053476	ENSMMUG00000063226 ##37	MRI1 (ENSMMUG00000018068)	ZSWIM4 (ENSMMUG00000017645)	NANOS3 (ENSMMUG00000049716)	ENSMMUG00000049316	BRME1 (ENSMMUG00000008317)	CC2D1A (ENSMMUG00000008320)	PODNL1 (ENSMMUG00000008324)	DCAF15 (ENSMMUG00000008326)	RFX1 (ENSMMUG00000018966)	RLN3 (ENSMMUG00000060189) ##22	IL27RA (ENSMMUG00000013538)	PALM3 (ENSMMUG00000013539)	ENSMMUG00000061407 ##37	MISP3 (ENSMMUG00000059667)	C19H19orf67 (ENSMMUG00000045865)	ENSMMUG00000058960	PRKACA (ENSMMUG00000014132)	ASF1B (ENSMMUG00000014135)	ADGRL1 (ENSMMUG00000014137)	ENSMMUG00000051365	ADGRE5 (ENSMMUG00000005722)	DDX39A (ENSMMUG00000005723)	PKN1 (ENSMMUG00000005727)	PTGER1 (ENSMMUG00000005728)	GIPC1 (ENSMMUG00000005729)
Pig-tailed macaque	MODERN SPECIES	76	NACC1 (ENSMNEG00000001897)	STX10 (ENSMNEG00000039402)	IER2 (ENSMNEG00000005809)	CACNA1A (ENSMNEG00000045532)	ENSMNEG00000032415	YJU2B (ENSMNEG00000032777)	MRI1 (ENSMNEG00000002628)	C19orf53 (ENSMNEG00000030499)	ZSWIM4 (ENSMNEG00000040630)	NANOS3 (ENSMNEG00000028898)	BRME1 (ENSMNEG00000042593)	CC2D1A (ENSMNEG00000044902)	PODNL1 (ENSMNEG00000029074)	DCAF15 (ENSMNEG00000031487)	RFX1 (ENSMNEG00000038388)	RLN3 (ENSMNEG00000008264) ##22	IL27RA (ENSMNEG00000044658)	PALM3 (ENSMNEG00000039886)	MISP3 (ENSMNEG00000043349)	C19orf67 (ENSMNEG00000035055)	SAMD1 (ENSMNEG00000014090)	PRKACA (ENSMNEG00000043476)	ASF1B (ENSMNEG00000028854)	ENSMNEG00000030430	ADGRL1 (ENSMNEG00000012530)	ADGRE5 (ENSMNEG00000027579)	DDX39A (ENSMNEG00000044292)	PKN1 (ENSMNEG00000018025)	PTGER1 (ENSMNEG00000029342)	GIPC1 (ENSMNEG00000044957)	DNAJB1 (ENSMNEG00000010488)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT01100000266868	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.p	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312.e
Sooty mangabey	MODERN SPECIES	347	NACC1 (ENSCATG00000035045)	STX10 (ENSCATG00000030837)	IER2 (ENSCATG00000021750)	CACNA1A (ENSCATG00000031790)	ENSCATG00000029680	YJU2B (ENSCATG00000031922)	MRI1 (ENSCATG00000029747)	C19orf53 (ENSCATG00000035863)	ZSWIM4 (ENSCATG00000024862)	NANOS3 (ENSCATG00000034885)	BRME1 (ENSCATG00000029619)	CC2D1A (ENSCATG00000040032)	PODNL1 (ENSCATG00000025145)	DCAF15 (ENSCATG00000041636)	RFX1 (ENSCATG00000041901)	RLN3 (ENSCATG00000040582) ##22	IL27RA (ENSCATG00000041637)	PALM3 (ENSCATG00000044550)	MISP3 (ENSCATG00000044272)	C19orf67 (ENSCATG00000044669)	SAMD1 (ENSCATG00000044018)	PRKACA (ENSCATG00000044336)	ASF1B (ENSCATG00000044100)	ADGRL1 (ENSCATG00000042135)	ADGRE5 (ENSCATG00000039127)	DDX39A (ENSCATG00000044440)	PKN1 (ENSCATG00000031225)	PTGER1 (ENSCATG00000040988)	GIPC1 (ENSCATG00000041252)	DNAJB1 (ENSCATG00000042394)	ENSCATG00000043025
Drill	MODERN SPECIES	833						YJU2B (ENSMLEG00000014204)	MRI1 (ENSMLEG00000035138)	C19orf53 (ENSMLEG00000043893)	ZSWIM4 (ENSMLEG00000030165)	NANOS3 (ENSMLEG00000033135)	BRME1 (ENSMLEG00000018878)	CC2D1A (ENSMLEG00000038654)	PODNL1 (ENSMLEG00000040267)	DCAF15 (ENSMLEG00000043946)	RFX1 (ENSMLEG00000030212)	RLN3 (ENSMLEG00000043479) ##22	PALM3 (ENSMLEG00000031068)	ENSMLEG00000032173	C19orf67 (ENSMLEG00000042564)	SAMD1 (ENSMLEG00000032102)	PRKACA (ENSMLEG00000034529)	ASF1B (ENSMLEG00000037143)	ENSMLEG00000039513	ADGRL1 (ENSMLEG00000040752)	ADGRE5 (ENSMLEG00000014705)	DDX39A (ENSMLEG00000007602)	PKN1 (ENSMLEG00000010292)	PTGER1 (ENSMLEG00000043291)	GIPC1 (ENSMLEG00000042964)	DNAJB1 (ENSMLEG00000037135)	TECR (ENSMLEG00000033027)
Olive baboon	MODERN SPECIES	12	STX10 (ENSPANG00000012122)	IER2 (ENSPANG00000014006)	CACNA1A (ENSPANG00000009077)	ENSPANG00000044374	YJU2B (ENSPANG00000009961)	MRI1 (ENSPANG00000010977)	C19orf53 (ENSPANG00000038691)	ZSWIM4 (ENSPANG00000018289)	ENSPANG00000048009	NANOS3 (ENSPANG00000015037)	BRME1 (ENSPANG00000017976)	CC2D1A (ENSPANG00000019934)	PODNL1 (ENSPANG00000017712)	DCAF15 (ENSPANG00000011700)	RFX1 (ENSPANG00000009789)	ENSPANG00000005369 ##22	IL27RA (ENSPANG00000015627)	PALM3 (ENSPANG00000005117)	MISP3 (ENSPANG00000001631)	C19orf67 (ENSPANG00000019962)	ENSPANG00000014189	PRKACA (ENSPANG00000018288)	ASF1B (ENSPANG00000031048)	ADGRL1 (ENSPANG00000007386)	PKN1 (ENSPANG00000004240)	PTGER1 (ENSPANG00000010976)	GIPC1 (ENSPANG00000008550)	DNAJB1 (ENSPANG00000015164)	TECR (ENSPANG00000004446)	NDUFB7 (ENSPANG00000011699)	CLEC17A (ENSPANG00000026252)
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Glires	ANCESTRAL SPECIES	21	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Rodentia	ANCESTRAL SPECIES	17	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Rodentia_B	ANCESTRAL SPECIES	43	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Myomorpha	ANCESTRAL SPECIES	52	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Muroidea	ANCESTRAL SPECIES	60	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Mus	ANCESTRAL SPECIES	6	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186.c	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Ryukyu mouse	MODERN SPECIES	17	Nacc1 (MGP_CAROLIEiJ_G0031303)	Ier2 (MGP_CAROLIEiJ_G0031302)	Cacna1a (MGP_CAROLIEiJ_G0031301)	MGP_CAROLIEiJ_G0031300	Mri1 (MGP_CAROLIEiJ_G0031299)	D8Ertd738e (MGP_CAROLIEiJ_G0031298)	Zswim4 (MGP_CAROLIEiJ_G0031297)	Nanos3 (MGP_CAROLIEiJ_G0031296)	Brme1 (MGP_CAROLIEiJ_G0031295)	Cc2d1a (MGP_CAROLIEiJ_G0031294)	Podnl1 (MGP_CAROLIEiJ_G0031293)	Dcaf15 (MGP_CAROLIEiJ_G0031292)	Rfx1 (MGP_CAROLIEiJ_G0031291)	MGP_CAROLIEiJ_G0031290	MGP_CAROLIEiJ_G0031289	Rln3 (MGP_CAROLIEiJ_G0031288) ##22	Il27ra (MGP_CAROLIEiJ_G0031287)	Palm3 (MGP_CAROLIEiJ_G0031286)	Misp3 (MGP_CAROLIEiJ_G0031285)	1700067K01Rik (MGP_CAROLIEiJ_G0031284)	MGP_CAROLIEiJ_G0031283	Prkaca (MGP_CAROLIEiJ_G0031282)	Asf1b (MGP_CAROLIEiJ_G0031281)	MGP_CAROLIEiJ_G0031280	Adgrl1 (MGP_CAROLIEiJ_G0031279)	Adgre5 (MGP_CAROLIEiJ_G0031278)	Ddx39a (MGP_CAROLIEiJ_G0031277)	Pkn1 (MGP_CAROLIEiJ_G0031276)	Ptger1 (MGP_CAROLIEiJ_G0031275)	Gipc1 (MGP_CAROLIEiJ_G0031274)	Dnajb1 (MGP_CAROLIEiJ_G0031273)
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952	ENSGT00940000162186.c	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Mouse	MODERN SPECIES	17	Trmt1 (ENSMUSG00000001909)	Nacc1 (ENSMUSG00000001910)	Ier2 (ENSMUSG00000053560)	Cacna1a (ENSMUSG00000034656)	Ccdc130 (ENSMUSG00000004994)	Mri1 (ENSMUSG00000004996)	D8Ertd738e (ENSMUSG00000019362)	Zswim4 (ENSMUSG00000035671)	Nanos3 (ENSMUSG00000056155)	Brme1 (ENSMUSG00000008129)	Cc2d1a (ENSMUSG00000036686)	Podnl1 (ENSMUSG00000012889)	Dcaf15 (ENSMUSG00000037103)	Rfx1 (ENSMUSG00000031706)	Gm10643 (ENSMUSG00000074215)	Rln3 (ENSMUSG00000045232) ##22	Il27ra (ENSMUSG00000005465)	Palm3 (ENSMUSG00000047986)	Misp3 (ENSMUSG00000074217)	1700067K01Rik (ENSMUSG00000046408)	Samd1 (ENSMUSG00000079003)	SMIM46 (ENSMUSG00000121579)	Prkaca (ENSMUSG00000005469)	Asf1b (ENSMUSG00000005470)	Adgrl1 (ENSMUSG00000013033)	Adgre5 (ENSMUSG00000002885)	Ddx39a (ENSMUSG00000005481)	Ptger1 (ENSMUSG00000019464)	Pkn1 (ENSMUSG00000057672)	Gipc1 (ENSMUSG00000019433)	Dnajb1 (ENSMUSG00000005483)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00900000143265	ENSGT00950000183929	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186.c	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Steppe mouse	MODERN SPECIES	2936				Cacna1a (ENSMSIG00000013335)	Ccdc130 (ENSMSIG00000013278)	Mri1 (ENSMSIG00000013255)	D8Ertd738e (ENSMSIG00000013244)	Zswim4 (ENSMSIG00000013176)	Nanos3 (ENSMSIG00000013144)	Brme1 (ENSMSIG00000013081)	Cc2d1a (ENSMSIG00000013019)	Podnl1 (ENSMSIG00000012995)	Dcaf15 (ENSMSIG00000012945)	Rfx1 (ENSMSIG00000012789)	ENSMSIG00000012780	Rln3 (ENSMSIG00000012772) ##22	Il27ra (ENSMSIG00000012734)	Palm3 (ENSMSIG00000012709)	ENSMSIG00000012685	1700067K01Rik (ENSMSIG00000012658)	ENSMSIG00000012646	Prkaca (ENSMSIG00000012589)	Asf1b (ENSMSIG00000012561)	Adgrl1 (ENSMSIG00000012147)	Adgre5 (ENSMSIG00000011871)	Ddx39a (ENSMSIG00000011831)	Pkn1 (ENSMSIG00000011733)	Ptger1 (ENSMSIG00000011721)	Gipc1 (ENSMSIG00000011710)	Dnajb1 (ENSMSIG00000011684)	ENSMSIG00000011638
spretus	MODERN SPECIES	17	MGP_SPRETEiJ_G0032421	Ier2 (MGP_SPRETEiJ_G0032420)	Cacna1a (MGP_SPRETEiJ_G0032419)	Ccdc130 (MGP_SPRETEiJ_G0032418)	Mri1 (MGP_SPRETEiJ_G0032417)	D8Ertd738e (MGP_SPRETEiJ_G0032416)	Zswim4 (MGP_SPRETEiJ_G0032415)	Nanos3 (MGP_SPRETEiJ_G0032414)	Brme1 (MGP_SPRETEiJ_G0032413)	Cc2d1a (MGP_SPRETEiJ_G0032412)	Podnl1 (MGP_SPRETEiJ_G0032411)	Dcaf15 (MGP_SPRETEiJ_G0032410)	Rfx1 (MGP_SPRETEiJ_G0032409)	MGP_SPRETEiJ_G0032408	Gm10643 (MGP_SPRETEiJ_G0032407)	Rln3 (MGP_SPRETEiJ_G0032406) ##22	Il27ra (MGP_SPRETEiJ_G0032405)	Palm3 (MGP_SPRETEiJ_G0032404)	Misp3 (MGP_SPRETEiJ_G0032403)	1700067K01Rik (MGP_SPRETEiJ_G0032402)	Prkaca (MGP_SPRETEiJ_G0032401)	Asf1b (MGP_SPRETEiJ_G0032400)	MGP_SPRETEiJ_G0032399	Adgrl1 (MGP_SPRETEiJ_G0032398)	Adgre5 (MGP_SPRETEiJ_G0032397)	Ddx39a (MGP_SPRETEiJ_G0032396)	Pkn1 (MGP_SPRETEiJ_G0032395)	Ptger1 (MGP_SPRETEiJ_G0032394)	Gipc1 (MGP_SPRETEiJ_G0032393)	Dnajb1 (MGP_SPRETEiJ_G0032392)	Tecr (MGP_SPRETEiJ_G0032391)
Shrew mouse	MODERN SPECIES	12	Nacc1 (MGP_PahariEiJ_G0022909)	Ier2 (MGP_PahariEiJ_G0022908)	Cacna1a (MGP_PahariEiJ_G0022907)	Ccdc130 (MGP_PahariEiJ_G0022906)	Mri1 (MGP_PahariEiJ_G0022905)	D8Ertd738e (MGP_PahariEiJ_G0022904)	Zswim4 (MGP_PahariEiJ_G0022903)	Nanos3 (MGP_PahariEiJ_G0022902)	Brme1 (MGP_PahariEiJ_G0022901)	Cc2d1a (MGP_PahariEiJ_G0022900)	Podnl1 (MGP_PahariEiJ_G0022899)	Dcaf15 (MGP_PahariEiJ_G0022898)	Rfx1 (MGP_PahariEiJ_G0022897)	MGP_PahariEiJ_G0022896	MGP_PahariEiJ_G0022895	Rln3 (MGP_PahariEiJ_G0022894) ##22	Il27ra (MGP_PahariEiJ_G0022893)	Palm3 (MGP_PahariEiJ_G0022892)	Misp3 (MGP_PahariEiJ_G0022891)	1700067K01Rik (MGP_PahariEiJ_G0022890)	MGP_PahariEiJ_G0022889	Prkaca (MGP_PahariEiJ_G0022888)	Asf1b (MGP_PahariEiJ_G0022887)	MGP_PahariEiJ_G0022886	Adgrl1 (MGP_PahariEiJ_G0022885)	Adgre5 (MGP_PahariEiJ_G0022884)	Ddx39a (MGP_PahariEiJ_G0022883)	Ptger1 (MGP_PahariEiJ_G0022882)	Pkn1 (MGP_PahariEiJ_G0022881)	Gipc1 (MGP_PahariEiJ_G0022880)	Dnajb1 (MGP_PahariEiJ_G0022879)
Rat	MODERN SPECIES	10	Nfix (ENSRNOG00000002983)	Lyl1 (ENSRNOG00000002950)	Trmt1 (ENSRNOG00000002914)	Nacc1 (ENSRNOG00000002864)	Ier2 (ENSRNOG00000067274)	Cacna1a (ENSRNOG00000052707)	Yju2b (ENSRNOG00000008319)	Mri1 (ENSRNOG00000026211)	LOC288913 (ENSRNOG00000049931)	Nanos3 (ENSRNOG00000031593)	Brme1 (ENSRNOG00000025796)	Cc2d1a (ENSRNOG00000006747)	Podnl1 (ENSRNOG00000006741)	Dcaf15 (ENSRNOG00000006551)	Rfx1 (ENSRNOG00000006049)	Rln3 (ENSRNOG00000005911) ##22	Il27ra (ENSRNOG00000005747)	Il27ra (ENSRNOG00000005729)	Misp3 (ENSRNOG00000005619)	LOC686013 (ENSRNOG00000005533)	Samd1 (ENSRNOG00000065861)	Prkaca (ENSRNOG00000005257)	Asf1b (ENSRNOG00000005115)	Adgrl1 (ENSRNOG00000029134)	AABR07043167.1 (ENSRNOG00000039252)	Adgre5 (ENSRNOG00000004489)	Ddx39a (ENSRNOG00000004373)	Pkn1 (ENSRNOG00000004131)	Gipc1 (ENSRNOG00000003864)	Ptger1 (ENSRNOG00000004094)	Dnajb1 (ENSRNOG00000021824)
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Cricetinae	ANCESTRAL SPECIES	40	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Chinese hamster chok1gshd	MODERN SPECIES	347	Lyl1 (ENSCGRG00001020161)	Trmt1 (ENSCGRG00001022594)	Nacc1 (ENSCGRG00001016498)	Ier2 (ENSCGRG00001015864)	Cacna1a (ENSCGRG00001015728)	Ccdc130 (ENSCGRG00001021573)	MRI1 (ENSCGRG00001015655)	D8Ertd738e (ENSCGRG00001019898)	Zswim4 (ENSCGRG00001022171)	Nanos3 (ENSCGRG00001023851)	Brme1 (ENSCGRG00001007024)	Cc2d1a (ENSCGRG00001014304)	Podnl1 (ENSCGRG00001020503)	Dcaf15 (ENSCGRG00001023898)	Rfx1 (ENSCGRG00001011068)	Rln3 (ENSCGRG00001018325) ##22	Il27ra (ENSCGRG00001019895)	Palm3 (ENSCGRG00001015020)	Misp3 (ENSCGRG00001015443)	1700067K01Rik (ENSCGRG00001015825)	Samd1 (ENSCGRG00001016469)	PRKACA (ENSCGRG00001017184)	Asf1b (ENSCGRG00001018098)	Adgrl1 (ENSCGRG00001022080)	ENSCGRG00001000091	Adgre5 (ENSCGRG00001000548)	Ddx39a (ENSCGRG00001001611)	Pkn1 (ENSCGRG00001009026)	Ptger1 (ENSCGRG00001012182)	Gipc1 (ENSCGRG00001013034)	Dnajb1 (ENSCGRG00001013728)
Golden Hamster	MODERN SPECIES	893							Ccdc130 (ENSMAUG00000020315)	Mri1 (ENSMAUG00000003451)	Zswim4 (ENSMAUG00000021623)	Nanos3 (ENSMAUG00000008396)	Brme1 (ENSMAUG00000021597)	Cc2d1a (ENSMAUG00000003818)	Podnl1 (ENSMAUG00000010711)	Dcaf15 (ENSMAUG00000010865)	Rfx1 (ENSMAUG00000018885)	Rln3 (ENSMAUG00000016189) ##22	Il27ra (ENSMAUG00000004460)	Palm3 (ENSMAUG00000020501)	Misp3 (ENSMAUG00000015004)	1700067K01Rik (ENSMAUG00000017815)	ENSMAUG00000011537	Prkaca (ENSMAUG00000004842)	Asf1b (ENSMAUG00000020077)	Adgrl1 (ENSMAUG00000000445)	Adgre5 (ENSMAUG00000018404)	Ddx39a (ENSMAUG00000008459)	Pkn1 (ENSMAUG00000012228)	Ptger1 (ENSMAUG00000012479)	ENSMAUG00000009614	Dnajb1 (ENSMAUG00000005728)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Northern American deer mouse	MODERN SPECIES	18	Trmt1 (ENSPEMG00000016247)	Nacc1 (ENSPEMG00000003314)	ENSPEMG00000028317	Ier2 (ENSPEMG00000005842)	ENSPEMG00000030103	ENSPEMG00000031086	Ccdc130 (ENSPEMG00000013906)	Mri1 (ENSPEMG00000006105)	D8Ertd738e (ENSPEMG00000027807)	Zswim4 (ENSPEMG00000009048)	Nanos3 (ENSPEMG00000030151)	Brme1 (ENSPEMG00000000718)	Podnl1 (ENSPEMG00000018883)	Dcaf15 (ENSPEMG00000012514)	Rfx1 (ENSPEMG00000014245)	Rln3 (ENSPEMG00000005926) ##22	Il27ra (ENSPEMG00000011917)	Palm3 (ENSPEMG00000000570)	Misp3 (ENSPEMG00000017574)	1700067K01Rik (ENSPEMG00000008680)	ENSPEMG00000017586	Prkaca (ENSPEMG00000002089)	Asf1b (ENSPEMG00000026306)	Adgrl1 (ENSPEMG00000008075)	ENSPEMG00000028964	Adgre5 (ENSPEMG00000012912)	ENSPEMG00000017767	Pkn1 (ENSPEMG00000018704)	Ptger1 (ENSPEMG00000027389)	Gipc1 (ENSPEMG00000008496)	Dnajb1 (ENSPEMG00000007843)
Prairie vole	MODERN SPECIES	173	ENSMOCG00000018653	Ier2 (ENSMOCG00000001243)	Cacna1a (ENSMOCG00000014432)	ENSMOCG00000010484	ENSMOCG00000009861	Mri1 (ENSMOCG00000009591)	D8Ertd738e (ENSMOCG00000000560)	Zswim4 (ENSMOCG00000013310)	Nanos3 (ENSMOCG00000000059)	Brme1 (ENSMOCG00000019462)	Cc2d1a (ENSMOCG00000009561)	Podnl1 (ENSMOCG00000019920)	ENSMOCG00000019700	Dcaf15 (ENSMOCG00000017126)	Rfx1 (ENSMOCG00000009461)	Rln3 (ENSMOCG00000011994) ##22	Il27ra (ENSMOCG00000015066)	Palm3 (ENSMOCG00000019944)	Misp3 (ENSMOCG00000012756)	1700067K01Rik (ENSMOCG00000012915)	ENSMOCG00000000409	Prkaca (ENSMOCG00000009319)	Asf1b (ENSMOCG00000019691)	ENSMOCG00000016743	Adgrl1 (ENSMOCG00000019230)	Adgre5 (ENSMOCG00000015102)	Ddx39a (ENSMOCG00000016890)	Pkn1 (ENSMOCG00000001118)	Ptger1 (ENSMOCG00000012350)	Gipc1 (ENSMOCG00000008417)	ENSMOCG00000017692
Upper Galilee mountains blind mole rat	MODERN SPECIES	1738	Nfix (ENSNGAG00000016724)	Lyl1 (ENSNGAG00000014673)	Trmt1 (ENSNGAG00000022486)	Nacc1 (ENSNGAG00000021982)	Cacna1a (ENSNGAG00000000916)	ENSNGAG00000011971	Mri1 (ENSNGAG00000022102)	D8Ertd738e (ENSNGAG00000016091)	Zswim4 (ENSNGAG00000001121)	Nanos3 (ENSNGAG00000020486)	ENSNGAG00000007857	Cc2d1a (ENSNGAG00000020333)	Podnl1 (ENSNGAG00000000890)	Dcaf15 (ENSNGAG00000009961)	Rfx1 (ENSNGAG00000015296)	Rln3 (ENSNGAG00000014225) ##22	Il27ra (ENSNGAG00000012078)	Palm3 (ENSNGAG00000000694)	Misp3 (ENSNGAG00000007990)	1700067K01Rik (ENSNGAG00000022697)	Samd1 (ENSNGAG00000014280)	Prkaca (ENSNGAG00000004941)	Asf1b (ENSNGAG00000019502)	ENSNGAG00000021731	Adgrl1 (ENSNGAG00000013398)	Adgre5 (ENSNGAG00000021625)	Ddx39a (ENSNGAG00000010734)	Pkn1 (ENSNGAG00000018524)	Ptger1 (ENSNGAG00000015906)	Gipc1 (ENSNGAG00000001250)	Dnajb1 (ENSNGAG00000023791)
Lesser Egyptian jerboa	MODERN SPECIES	234	Lyl1 (ENSJJAG00000015977)	Trmt1 (ENSJJAG00000017154)	Nacc1 (ENSJJAG00000000199)	ENSJJAG00000012119	Ier2 (ENSJJAG00000015305)	Cacna1a (ENSJJAG00000020086)	ENSJJAG00000015193	Mri1 (ENSJJAG00000018104)	D8Ertd738e (ENSJJAG00000019133)	Zswim4 (ENSJJAG00000019795)	Nanos3 (ENSJJAG00000000545)	Cc2d1a (ENSJJAG00000011117)	Podnl1 (ENSJJAG00000019479)	Dcaf15 (ENSJJAG00000020594)	Rfx1 (ENSJJAG00000007901)	Rln3 (ENSJJAG00000016021) ##22	Il27ra (ENSJJAG00000016724)	ENSJJAG00000019152	Misp3 (ENSJJAG00000019250)	1700067K01Rik (ENSJJAG00000019559)	Prkaca (ENSJJAG00000021581)	Asf1b (ENSJJAG00000022179)	Adgrl1 (ENSJJAG00000010567)
Kangaroo rat	MODERN SPECIES	502	Farsa (ENSDORG00000010118)	Calr (ENSDORG00000010117)	Rad23a (ENSDORG00000010116)	Dand5 (ENSDORG00000007059)	Nfix (ENSDORG00000012235)	Lyl1 (ENSDORG00000029482)	Trmt1 (ENSDORG00000014298)	Nacc1 (ENSDORG00000003988)	Cacna1a (ENSDORG00000010862)	Ccdc130 (ENSDORG00000010877)	Mri1 (ENSDORG00000010875)	D8Ertd738e (ENSDORG00000023743)	Zswim4 (ENSDORG00000016139)	Cc2d1a (ENSDORG00000016499)	Rfx1 (ENSDORG00000016506)	Rln3 (ENSDORG00000013264) ##22	Il27ra (ENSDORG00000013261)	1700067K01Rik (ENSDORG00000027830)	Prkaca (ENSDORG00000014936)	Asf1b (ENSDORG00000029005)	ENSDORG00000014805	ENSDORG00000029791	Adgre5 (ENSDORG00000013039)	Ddx39a (ENSDORG00000013041)	Pkn1 (ENSDORG00000012299)	ENSDORG00000015209	Dnajb1 (ENSDORG00000015210)	Tecr (ENSDORG00000015212)	Ndufb7 (ENSDORG00000015213)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Marmotini	ANCESTRAL SPECIES	41	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Marmotini_b	ANCESTRAL SPECIES	40	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Squirrel	MODERN SPECIES	259	TRMT1 (ENSSTOG00000012531)	NACC1 (ENSSTOG00000007865)	STX10 (ENSSTOG00000007880)	IER2 (ENSSTOG00000007900)	CACNA1A (ENSSTOG00000024862)	YJU2B (ENSSTOG00000006281)	MRI1 (ENSSTOG00000020750)	C19orf53 (ENSSTOG00000011602)	ZSWIM4 (ENSSTOG00000021055)	NANOS3 (ENSSTOG00000024797)	BRME1 (ENSSTOG00000028732)	CC2D1A (ENSSTOG00000019980)	PODNL1 (ENSSTOG00000021014)	DCAF15 (ENSSTOG00000024329)	RFX1 (ENSSTOG00000025432)	RLN3 (ENSSTOG00000024302) ##22	IL27RA (ENSSTOG00000008690)	PALM3 (ENSSTOG00000023133)	C19orf67 (ENSSTOG00000001321)	PRKACA (ENSSTOG00000002327)	ASF1B (ENSSTOG00000002335)	ADGRL1 (ENSSTOG00000024713)	ENSSTOG00000021516	ADGRE5 (ENSSTOG00000013742)	DDX39A (ENSSTOG00000013762)	PKN1 (ENSSTOG00000029002)	PTGER1 (ENSSTOG00000013787)	GIPC1 (ENSSTOG00000013788)	DNAJB1 (ENSSTOG00000026438)	TECR (ENSSTOG00000013803)	NDUFB7 (ENSSTOG00000013808)
Arctic ground squirrel	MODERN SPECIES	217	TRMT1 (ENSUPAG00010008343)	NACC1 (ENSUPAG00010008354)	STX10 (ENSUPAG00010008362)	IER2 (ENSUPAG00010008375)	CACNA1A (ENSUPAG00010008388)	YJU2B (ENSUPAG00010011639)	MRI1 (ENSUPAG00010011651)	C19orf53 (ENSUPAG00010011656)	ZSWIM4 (ENSUPAG00010011666)	NANOS3 (ENSUPAG00010011697)	BRME1 (ENSUPAG00010011699)	CC2D1A (ENSUPAG00010011706)	PODNL1 (ENSUPAG00010011723)	DCAF15 (ENSUPAG00010011735)	RFX1 (ENSUPAG00010011748)	RLN3 (ENSUPAG00010011794) ##22	IL27RA (ENSUPAG00010011800)	PALM3 (ENSUPAG00010011814)	MISP3 (ENSUPAG00010011828)	C19orf67 (ENSUPAG00010011838)	ENSUPAG00010011851	PRKACA (ENSUPAG00010011860)	ASF1B (ENSUPAG00010011900)	ADGRL1 (ENSUPAG00010011915)	ADGRE5 (ENSUPAG00010012057)	DDX39A (ENSUPAG00010012095)	PKN1 (ENSUPAG00010012107)	PTGER1 (ENSUPAG00010012165)	GIPC1 (ENSUPAG00010012168)	DNAJB1 (ENSUPAG00010012186)	TECR (ENSUPAG00010012195)
Alpin marmot	MODERN SPECIES	24	DAND5 (ENSMMMG00000021038)	NFIX (ENSMMMG00000021044)	LYL1 (ENSMMMG00000021069)	TRMT1 (ENSMMMG00000021080)	NACC1 (ENSMMMG00000021510)	STX10 (ENSMMMG00000021518)	ENSMMMG00000021534	YJU2B (ENSMMMG00000021549)	ENSMMMG00000021583	ZSWIM4 (ENSMMMG00000021589)	NANOS3 (ENSMMMG00000021601)	ENSMMMG00000021612	PODNL1 (ENSMMMG00000021701)	DCAF15 (ENSMMMG00000021706)	RFX1 (ENSMMMG00000021740)	RLN3 (ENSMMMG00000021867) ##22	IL27RA (ENSMMMG00000021869)	C19orf67 (ENSMMMG00000021884)	ENSMMMG00000021895	PRKACA (ENSMMMG00000021903)	ASF1B (ENSMMMG00000021930)	ADGRL1 (ENSMMMG00000021934)	ENSMMMG00000021974	ADGRE5 (ENSMMMG00000021978)	DDX39A (ENSMMMG00000021991)	PKN1 (ENSMMMG00000021999)	DNAJB1 (ENSMMMG00000022072)	TECR (ENSMMMG00000022077)	NDUFB7 (ENSMMMG00000022088)	ADGRE3 (ENSMMMG00000022100)	ENSMMMG00000022105
Eurasian red squirrel	MODERN SPECIES	7	IER2 (ENSSVLG00005018745)	CACNA1A (ENSSVLG00005020388)	ENSSVLG00005024893	ENSSVLG00005024924	ENSSVLG00005024939	ENSSVLG00005024956	YJU2B (ENSSVLG00005024977)	MRI1 (ENSSVLG00005025000)	C19orf53 (ENSSVLG00005025010)	ZSWIM4 (ENSSVLG00005025031)	NANOS3 (ENSSVLG00005025060)	ENSSVLG00005025075	PODNL1 (ENSSVLG00005025116)	DCAF15 (ENSSVLG00005025150)	RFX1 (ENSSVLG00005025184)	RLN3 (ENSSVLG00005025204) ##22	IL27RA (ENSSVLG00005025225)	PALM3 (ENSSVLG00005025246)	MISP3 (ENSSVLG00005025270)	C19orf67 (ENSSVLG00005025279)	ENSSVLG00005025298	PRKACA (ENSSVLG00005025328)	ASF1B (ENSSVLG00005025369)	ENSSVLG00005025395	ENSSVLG00005025403	ADGRE5 (ENSSVLG00005025449)	DDX39A (ENSSVLG00005025506)	PKN1 (ENSSVLG00005025535)	PTGER1 (ENSSVLG00005025557)	GIPC1 (ENSSVLG00005025566)	DNAJB1 (ENSSVLG00005025574)
Hystricomorpha	ANCESTRAL SPECIES	55	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000163111.a.b.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000045273	NFIX (ENSHGLG00000010071)	LYL1 (ENSHGLG00000046929)	NACC1 (ENSHGLG00000008369)	ENSHGLG00000050447	IER2 (ENSHGLG00000050933)	YJU2B (ENSHGLG00000008180)	MRI1 (ENSHGLG00000010969)	C19orf53 (ENSHGLG00000035084)	ZSWIM4 (ENSHGLG00000019264)	NANOS3 (ENSHGLG00000019378)	ENSHGLG00000003199	PODNL1 (ENSHGLG00000008104)	DCAF15 (ENSHGLG00000010729)	RFX1 (ENSHGLG00000013500)	RLN3 (ENSHGLG00000006860) ##22	IL27RA (ENSHGLG00000008513)	ENSHGLG00000038000	MISP3 (ENSHGLG00000004102)	C19orf67 (ENSHGLG00000004595)	ENSHGLG00000041868	ENSHGLG00000007137	ENSHGLG00000009203	ADGRL1 (ENSHGLG00000011314)	ENSHGLG00000042784	DDX39A (ENSHGLG00000018263)	PKN1 (ENSHGLG00000015605)	PTGER1 (ENSHGLG00000015428)	GIPC1 (ENSHGLG00000035217)	DNAJB1 (ENSHGLG00000016171)	ENSHGLG00000018607
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Guinea pig	MODERN SPECIES	42	GADD45GIP1 (ENSCPOG00000024072)	RAD23A (ENSCPOG00000037407)	NFIX (ENSCPOG00000022563)	LYL1 (ENSCPOG00000036111)	TRMT1 (ENSCPOG00000011754)	NACC1 (ENSCPOG00000022222)	CACNA1A (ENSCPOG00000025184)	YJU2B (ENSCPOG00000006545)	MRI1 (ENSCPOG00000013191)	C19orf53 (ENSCPOG00000013192)	NANOS3 (ENSCPOG00000020727)	CC2D1A (ENSCPOG00000004231)	PODNL1 (ENSCPOG00000021831)	DCAF15 (ENSCPOG00000010084)	RFX1 (ENSCPOG00000010089)	RLN3 (ENSCPOG00000013564) ##22	IL27RA (ENSCPOG00000013567)	IFITM10 (ENSCPOG00000019284)	CTSD (ENSCPOG00000008493)	SYT8 (ENSCPOG00000036706)	TNNI2 (ENSCPOG00000008658)	ENSCPOG00000038479	TNNT3 (ENSCPOG00000005480)	ENSCPOG00000035162	IGF2 (ENSCPOG00000038983)	INS (ENSCPOG00000031250)	TH (ENSCPOG00000012591)	ENSCPOG00000038059	ASCL2 (ENSCPOG00000035275)	TSPAN32 (ENSCPOG00000020601)	CD81 (ENSCPOG00000010241)
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Long-tailed chinchilla	MODERN SPECIES	122	LYL1 (ENSCLAG00000014483)	TRMT1 (ENSCLAG00000015295)	NACC1 (ENSCLAG00000016122)	IER2 (ENSCLAG00000015309)	CACNA1A (ENSCLAG00000013282)	YJU2B (ENSCLAG00000011790)	MRI1 (ENSCLAG00000013025)	C19orf53 (ENSCLAG00000011489)	ZSWIM4 (ENSCLAG00000011642)	NANOS3 (ENSCLAG00000015139)	ENSCLAG00000015002	CC2D1A (ENSCLAG00000012998)	PODNL1 (ENSCLAG00000013361)	DCAF15 (ENSCLAG00000015146)	RFX1 (ENSCLAG00000013348)	RLN3 (ENSCLAG00000013074) ##22	IL27RA (ENSCLAG00000013752)	PALM3 (ENSCLAG00000016217)	C19orf67 (ENSCLAG00000014973)	PRKACA (ENSCLAG00000015604)	ASF1B (ENSCLAG00000011839)	ADGRL1 (ENSCLAG00000013543)	ENSCLAG00000013773	ADGRE5 (ENSCLAG00000014267)	DDX39A (ENSCLAG00000015069)	PKN1 (ENSCLAG00000016252)	PTGER1 (ENSCLAG00000015236)	GIPC1 (ENSCLAG00000016614)	DNAJB1 (ENSCLAG00000014789)	NDUFB7 (ENSCLAG00000015228)	TECR (ENSCLAG00000015751)
Degu	MODERN SPECIES	114	TRMT1 (ENSODEG00000010323)	ENSODEG00000019786	NACC1 (ENSODEG00000009255)	IER2 (ENSODEG00000013532)	CACNA1A (ENSODEG00000009256)	YJU2B (ENSODEG00000009976)	ENSODEG00000010083	C19orf53 (ENSODEG00000009270)	ZSWIM4 (ENSODEG00000009901)	NANOS3 (ENSODEG00000008907)	CC2D1A (ENSODEG00000009306)	PODNL1 (ENSODEG00000009051)	ENSODEG00000011425	DCAF15 (ENSODEG00000010421)	RFX1 (ENSODEG00000011025)	RLN3 (ENSODEG00000009268) ##22	IL27RA (ENSODEG00000009893)	PALM3 (ENSODEG00000008820)	MISP3 (ENSODEG00000009732)	C19orf67 (ENSODEG00000010090)	PRKACA (ENSODEG00000009087)	ASF1B (ENSODEG00000009467)	ENSODEG00000009258	ADGRL1 (ENSODEG00000008624)	ENSODEG00000019750	ADGRE5 (ENSODEG00000009226)	ENSODEG00000009068	PKN1 (ENSODEG00000008829)	PTGER1 (ENSODEG00000010144)	ENSODEG00000008921	DNAJB1 (ENSODEG00000008741)
Lagomorpha	ANCESTRAL SPECIES	328																ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186
Pika	MODERN SPECIES	3361																RLN3 (ENSOPRG00000007508) ##22	IL27RA (ENSOPRG00000007515)	ENSOPRG00000007535	C19orf67 (ENSOPRG00000007552)	ENSOPRG00000007570	PRKACA (ENSOPRG00000007574)
Rabbit	MODERN SPECIES	1193															ENSOCUG00000023815	RLN3 (ENSOCUG00000013451) ##22	IL27RA (ENSOCUG00000014513)
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Equus	ANCESTRAL SPECIES	55	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00960000191218	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a
Donkey	MODERN SPECIES	12	TRMT1 (ENSEASG00005004050)	NACC1 (ENSEASG00005004040)	ENSEASG00005004032	IER2 (ENSEASG00005034811)	CACNA1A (ENSEASG00005000422)	YJU2B (ENSEASG00005000166)	MRI1 (ENSEASG00005000151)	C19orf53 (ENSEASG00005025989)	ZSWIM4 (ENSEASG00005015317)	NANOS3 (ENSEASG00005015313)	ENSEASG00005032947	CC2D1A (ENSEASG00005015309)	PODNL1 (ENSEASG00005015307)	DCAF15 (ENSEASG00005015306)	RFX1 (ENSEASG00005015303)	RLN3 (ENSEASG00005038338) ##22	IL27RA (ENSEASG00005015299)	PALM3 (ENSEASG00005015298)	MISP3 (ENSEASG00005015296)	C19orf67 (ENSEASG00005015293)	ENSEASG00005015288	PRKACA (ENSEASG00005015286)	ASF1B (ENSEASG00005015285)	ENSEASG00005015284	ADGRL1 (ENSEASG00005015282)	ENSEASG00005015277	ADGRE5 (ENSEASG00005023556)	DDX39A (ENSEASG00005015272)	PKN1 (ENSEASG00005015248)	PTGER1 (ENSEASG00005035659)	GIPC1 (ENSEASG00005015241)
Chiroptera	ANCESTRAL SPECIES	60	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Megabat	MODERN SPECIES	544									ZSWIM4 (ENSPVAG00000017533)	NANOS3 (ENSPVAG00000017538)	ENSPVAG00000017540	CC2D1A (ENSPVAG00000017544)	PODNL1 (ENSPVAG00000017547)	DCAF15 (ENSPVAG00000017548)	RFX1 (ENSPVAG00000017549)	RLN3 (ENSPVAG00000017551) ##22	IL27RA (ENSPVAG00000017552)	ENSPVAG00000017553	MISP3 (ENSPVAG00000017554)	C19orf67 (ENSPVAG00000017555)	PRKACA (ENSPVAG00000017556)	ASF1B (ENSPVAG00000017558)	ADGRL1 (ENSPVAG00000017560)
Microchiroptera	ANCESTRAL SPECIES	51	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Microbat	MODERN SPECIES	1247					CACNA1A (ENSMLUG00000010292)	ENSMLUG00000029452	YJU2B (ENSMLUG00000004757)	MRI1 (ENSMLUG00000004766)	C19orf53 (ENSMLUG00000004751)	NANOS3 (ENSMLUG00000012971)	BRME1 (ENSMLUG00000025695)	CC2D1A (ENSMLUG00000012974)	PODNL1 (ENSMLUG00000012982)	DCAF15 (ENSMLUG00000012992)	RFX1 (ENSMLUG00000013002)	RLN3 (ENSMLUG00000013013) ##22	IL27RA (ENSMLUG00000013014)	PALM3 (ENSMLUG00000013023)	MISP3 (ENSMLUG00000017771)	C19orf67 (ENSMLUG00000024756)	PRKACA (ENSMLUG00000008255)	ASF1B (ENSMLUG00000000537)	ADGRL1 (ENSMLUG00000000503)	ADGRE5 (ENSMLUG00000009235)	ENSMLUG00000009280	PKN1 (ENSMLUG00000008347)	PTGER1 (ENSMLUG00000008382)	GIPC1 (ENSMLUG00000008387)	DNAJB1 (ENSMLUG00000012065)	TECR (ENSMLUG00000008415)	ENSMLUG00000008446
Greater horseshoe bat	MODERN SPECIES	9	TRMT1 (ENSRFEG00010020964)	NACC1 (ENSRFEG00010020944)	STX10 (ENSRFEG00010020918)	IER2 (ENSRFEG00010020910)	CACNA1A (ENSRFEG00010012402)	YJU2B (ENSRFEG00010011786)	MRI1 (ENSRFEG00010011758)	C19orf53 (ENSRFEG00010011715)	ZSWIM4 (ENSRFEG00010011662)	NANOS3 (ENSRFEG00010011622)	ENSRFEG00010011572	CC2D1A (ENSRFEG00010010723)	PODNL1 (ENSRFEG00010010558)	DCAF15 (ENSRFEG00010010497)	RFX1 (ENSRFEG00010010442)	RLN3 (ENSRFEG00010010382) ##22	IL27RA (ENSRFEG00010010284)	PALM3 (ENSRFEG00010010244)	MISP3 (ENSRFEG00010010210)	C19orf67 (ENSRFEG00010010158)	ENSRFEG00010009981	PRKACA (ENSRFEG00010009863)	ASF1B (ENSRFEG00010009782)	ADGRL1 (ENSRFEG00010009604)	ADGRE5 (ENSRFEG00010009510)	DDX39A (ENSRFEG00010009438)	PKN1 (ENSRFEG00010009333)	PTGER1 (ENSRFEG00010009300)	GIPC1 (ENSRFEG00010009204)	DNAJB1 (ENSRFEG00010009149)	TECR (ENSRFEG00010009075)
Carnivora	ANCESTRAL SPECIES	6	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Caniformia	ANCESTRAL SPECIES	4	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952.b	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Ursidae	ANCESTRAL SPECIES	20	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000164104	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Ursus	ANCESTRAL SPECIES	91	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00940000164104	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162952.b	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990.g	ENSGT00390000003420.a.a	ENSGT00940000160312
Polar bear	MODERN SPECIES	464	LYL1 (ENSUMAG00000006035)	TRMT1 (ENSUMAG00000006027)	ENSUMAG00000006026	ENSUMAG00000006021	ENSUMAG00000006017	CACNA1A (ENSUMAG00000004898)	YJU2B (ENSUMAG00000004756)	MRI1 (ENSUMAG00000004743)	ENSUMAG00000004739	ZSWIM4 (ENSUMAG00000004723)	NANOS3 (ENSUMAG00000004703)	ENSUMAG00000004697	CC2D1A (ENSUMAG00000004689)	DCAF15 (ENSUMAG00000004671)	RFX1 (ENSUMAG00000004593)	RLN3 (ENSUMAG00000004584) ##22	IL27RA (ENSUMAG00000004578)	PALM3 (ENSUMAG00000004555)	C19orf67 (ENSUMAG00000004533)	ENSUMAG00000004525	PRKACA (ENSUMAG00000004434)	ASF1B (ENSUMAG00000004416)	ENSUMAG00000004412	ADGRL1 (ENSUMAG00000004364)	ADGRE5 (ENSUMAG00000004331)	DDX39A (ENSUMAG00000004317)	PKN1 (ENSUMAG00000003471)	ENSUMAG00000003324	DNAJB1 (ENSUMAG00000003319)	TECR (ENSUMAG00000003206)	CLEC17A (ENSUMAG00000003197)
American black bear	MODERN SPECIES	1007										NANOS3 (ENSUAMG00000006804)	ENSUAMG00000006807	CC2D1A (ENSUAMG00000006829)	PODNL1 (ENSUAMG00000007176)	DCAF15 (ENSUAMG00000007182)	RFX1 (ENSUAMG00000007187)	RLN3 (ENSUAMG00000007195) ##22	IL27RA (ENSUAMG00000007215)	PALM3 (ENSUAMG00000007276)	MISP3 (ENSUAMG00000007282)	C19orf67 (ENSUAMG00000007285)	ENSUAMG00000007288
Giant Panda	MODERN SPECIES	14	TRMT1 (ENSAMEG00000012598)	NACC1 (ENSAMEG00000012634)	STX10 (ENSAMEG00000012641)	IER2 (ENSAMEG00000020275)	CACNA1A (ENSAMEG00000012670)	YJU2B (ENSAMEG00000012903)	C19orf53 (ENSAMEG00000012918)	ZSWIM4 (ENSAMEG00000012935)	NANOS3 (ENSAMEG00000012972)	ENSAMEG00000029005	ENSAMEG00000012974	CC2D1A (ENSAMEG00000012975)	PODNL1 (ENSAMEG00000013040)	DCAF15 (ENSAMEG00000013062)	RFX1 (ENSAMEG00000013075)	RLN3 (ENSAMEG00000027838) ##22	IL27RA (ENSAMEG00000013118)	PALM3 (ENSAMEG00000030397)	MISP3 (ENSAMEG00000027357)	C19orf67 (ENSAMEG00000013133)	ENSAMEG00000013143	PRKACA (ENSAMEG00000013145)	ASF1B (ENSAMEG00000026497)	ADGRL1 (ENSAMEG00000013217)	ENSAMEG00000028371	ADGRE5 (ENSAMEG00000013296)	DDX39A (ENSAMEG00000013379)	PKN1 (ENSAMEG00000013411)	DNAJB1 (ENSAMEG00000013494)	TECR (ENSAMEG00000011444)	ENSAMEG00000027886
Mustelinae	ANCESTRAL SPECIES	45	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952.b	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
American mink	MODERN SPECIES	233	NACC1 (ENSNVIG00000004197)	STX10 (ENSNVIG00000004211)	IER2 (ENSNVIG00000004234)	CACNA1A (ENSNVIG00000004318)	YJU2B (ENSNVIG00000006150)	MRI1 (ENSNVIG00000006189)	C19orf53 (ENSNVIG00000006202)	ZSWIM4 (ENSNVIG00000006210)	NANOS3 (ENSNVIG00000006232)	ENSNVIG00000006245	ENSNVIG00000006254	CC2D1A (ENSNVIG00000006255)	PODNL1 (ENSNVIG00000006307)	DCAF15 (ENSNVIG00000006385)	RFX1 (ENSNVIG00000006441)	RLN3 (ENSNVIG00000006699) ##22	IL27RA (ENSNVIG00000006724)	PALM3 (ENSNVIG00000006881)	MISP3 (ENSNVIG00000006906)	PRKACA (ENSNVIG00000006918)	C19orf67 (ENSNVIG00000006983)	SAMD1 (ENSNVIG00000006996)	ASF1B (ENSNVIG00000007013)	ADGRL1 (ENSNVIG00000007029)	ADGRE5 (ENSNVIG00000007145)	DDX39A (ENSNVIG00000007480)	PKN1 (ENSNVIG00000007512)	PTGER1 (ENSNVIG00000007621)	GIPC1 (ENSNVIG00000007643)	DNAJB1 (ENSNVIG00000007668)	TECR (ENSNVIG00000007685)
Ferret	MODERN SPECIES	185	TRMT1 (ENSMPUG00000004210)	NACC1 (ENSMPUG00000004203)	STX10 (ENSMPUG00000004133)	IER2 (ENSMPUG00000018705)	CACNA1A (ENSMPUG00000003358)	YJU2B (ENSMPUG00000003348)	MRI1 (ENSMPUG00000003316)	C19orf53 (ENSMPUG00000003300)	ZSWIM4 (ENSMPUG00000003286)	NANOS3 (ENSMPUG00000003282)	ENSMPUG00000003271	CC2D1A (ENSMPUG00000003255)	PODNL1 (ENSMPUG00000003251)	RFX1 (ENSMPUG00000003132)	DCAF15 (ENSMPUG00000003126)	RLN3 (ENSMPUG00000003123) ##22	IL27RA (ENSMPUG00000003119)	PALM3 (ENSMPUG00000003113)	MISP3 (ENSMPUG00000003110)	C19orf67 (ENSMPUG00000003089)	ENSMPUG00000003082	PRKACA (ENSMPUG00000003076)	ASF1B (ENSMPUG00000003072)	ADGRL1 (ENSMPUG00000003065)	ADGRE5 (ENSMPUG00000003059)	DDX39A (ENSMPUG00000003051)	PKN1 (ENSMPUG00000003038)	PTGER1 (ENSMPUG00000003008)	GIPC1 (ENSMPUG00000002983)	DNAJB1 (ENSMPUG00000002977)	ENSMPUG00000018704
Canidae	ANCESTRAL SPECIES		ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a.d	ENSGT00940000159684	ENSGT00520000059915	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a.d	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Dingo	MODERN SPECIES	112	NACC1 (ENSCAFG00020005901)	ENSCAFG00020005909	ENSCAFG00020005912	IER2 (ENSCAFG00020005915)	CACNA1A (ENSCAFG00020005960)	YJU2B (ENSCAFG00020006657)	MRI1 (ENSCAFG00020006659)	C19orf53 (ENSCAFG00020006664)	ZSWIM4 (ENSCAFG00020006666)	NANOS3 (ENSCAFG00020006694)	ENSCAFG00020006696	CC2D1A (ENSCAFG00020006705)	PODNL1 (ENSCAFG00020006719)	DCAF15 (ENSCAFG00020006741)	RFX1 (ENSCAFG00020006758)	RLN3 (ENSCAFG00020006880) ##22	IL27RA (ENSCAFG00020006884)	PALM3 (ENSCAFG00020006907)	MISP3 (ENSCAFG00020006913)	C19orf67 (ENSCAFG00020006921)	ENSCAFG00020006932	PRKACA (ENSCAFG00020006939)	ENSCAFG00020006946	ADGRL1 (ENSCAFG00020006957)	ENSCAFG00020007285	ENSCAFG00020007287	ADGRE5 (ENSCAFG00020007373)	DDX39A (ENSCAFG00020007399)	PKN1 (ENSCAFG00020007410)	PTGER1 (ENSCAFG00020007434)	GIPC1 (ENSCAFG00020007439)
Dog	MODERN SPECIES	12	TRMT1 (ENSCAFG00845030492)	NACC1 (ENSCAFG00845030474)	STX10 (ENSCAFG00845030435)	IER2 (ENSCAFG00845030405)	CACNA1A (ENSCAFG00845028149)	CCDC130 (ENSCAFG00845027226)	MRI1 (ENSCAFG00845027181)	C20H19orf53 (ENSCAFG00845027143)	ZSWIM4 (ENSCAFG00845026936)	NANOS3 (ENSCAFG00845026758)	ENSCAFG00845026724	CC2D1A (ENSCAFG00845026441)	PODNL1 (ENSCAFG00845026152)	DCAF15 (ENSCAFG00845026029)	RFX1 (ENSCAFG00845025462)	RLN3 (ENSCAFG00845025377) ##22	IL27RA (ENSCAFG00845025289)	PALM3 (ENSCAFG00845025220)	MISP3 (ENSCAFG00845025166)	C19orf67 (ENSCAFG00845025095)	ENSCAFG00845025014	PRKACA (ENSCAFG00845024723)	ASF1B (ENSCAFG00845024582)	ENSCAFG00845024540	ADGRL1 (ENSCAFG00845023599)	ADGRE5 (ENSCAFG00845022971)	DDX39A (ENSCAFG00845022719)	PKN1 (ENSCAFG00845022295)	GIPC1 (ENSCAFG00845022090)	DNAJB1 (ENSCAFG00845022007)	TECR (ENSCAFG00845021824)
Red fox	MODERN SPECIES	182	NACC1 (ENSVVUG00000024182)	ENSVVUG00000024185	IER2 (ENSVVUG00000024187)	CACNA1A (ENSVVUG00000024251)	ENSVVUG00000026589	CCDC130 (ENSVVUG00000026733)	MRI1 (ENSVVUG00000026734)	CUNH19orf53 (ENSVVUG00000026738)	ZSWIM4 (ENSVVUG00000026745)	NANOS3 (ENSVVUG00000026757)	CUNH19orf57 (ENSVVUG00000026758)	CC2D1A (ENSVVUG00000026759)	PODNL1 (ENSVVUG00000026761)	DCAF15 (ENSVVUG00000026764)	RFX1 (ENSVVUG00000026765)	RLN3 (ENSVVUG00000026766) ##22	IL27RA (ENSVVUG00000026768)	PALM3 (ENSVVUG00000026777)	CUNH19orf67 (ENSVVUG00000026783)	ENSVVUG00000026786	PRKACA (ENSVVUG00000026789)	ENSVVUG00000026791	ADGRL1 (ENSVVUG00000026800)	ENSVVUG00000026816	ADGRE5 (ENSVVUG00000026826)	DDX39A (ENSVVUG00000026939)	PKN1 (ENSVVUG00000026944)	GIPC1 (ENSVVUG00000026950)	DNAJB1 (ENSVVUG00000026955)	TECR (ENSVVUG00000026956)	NDUFB7 (ENSVVUG00000026960)
Felidae	ANCESTRAL SPECIES	21	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Panthera	ANCESTRAL SPECIES	15	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Tiger	MODERN SPECIES	580	CALR (ENSPTIG00000011152)	RAD23A (ENSPTIG00000010565)	ENSPTIG00000010514	DAND5 (ENSPTIG00000010336)	NFIX (ENSPTIG00000009075)	TRMT1 (ENSPTIG00000008833)	STX10 (ENSPTIG00000008273)	ENSPTIG00000008052	YJU2B (ENSPTIG00000005555)	MRI1 (ENSPTIG00000005216)	C19orf53 (ENSPTIG00000004139)	ZSWIM4 (ENSPTIG00000001122)	NANOS3 (ENSPTIG00000000325)	ENSPTIG00000000031	CC2D1A (ENSPTIG00000021588)	RLN3 (ENSPTIG00000021464) ##22	ENSPTIG00000021368	C19orf67 (ENSPTIG00000021323)	PRKACA (ENSPTIG00000021292)	ASF1B (ENSPTIG00000021042)	ENSPTIG00000020966	ADGRL1 (ENSPTIG00000018453)	ADGRE5 (ENSPTIG00000017854)	DDX39A (ENSPTIG00000017287)	GIPC1 (ENSPTIG00000016866)	DNAJB1 (ENSPTIG00000016803)	ENSPTIG00000016780	CLEC17A (ENSPTIG00000016638)	ADGRE3 (ENSPTIG00000016203)	ZNF333 (ENSPTIG00000016059)	ENSPTIG00000014492
Panthera_a	ANCESTRAL SPECIES		ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102.b	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
leopard	MODERN SPECIES	110	TRMT1 (ENSPPRG00000012117)	NACC1 (ENSPPRG00000012438)	STX10 (ENSPPRG00000014043)	IER2 (ENSPPRG00000021487)	CACNA1A (ENSPPRG00000002365)	YJU2B (ENSPPRG00000005736)	MRI1 (ENSPPRG00000006539)	C19orf53 (ENSPPRG00000006905)	ZSWIM4 (ENSPPRG00000009270)	NANOS3 (ENSPPRG00000009573)	ENSPPRG00000009886	CC2D1A (ENSPPRG00000010376)	PODNL1 (ENSPPRG00000010654)	DCAF15 (ENSPPRG00000011956)	RFX1 (ENSPPRG00000012284)	RLN3 (ENSPPRG00000012695) ##22	IL27RA (ENSPPRG00000013931)	MISP3 (ENSPPRG00000018582)	C19orf67 (ENSPPRG00000020108)	SAMD1 (ENSPPRG00000021562)	PRKACA (ENSPPRG00000023771)	ASF1B (ENSPPRG00000023372)	ENSPPRG00000023219	ADGRL1 (ENSPPRG00000000803)	ADGRE5 (ENSPPRG00000002663)	DDX39A (ENSPPRG00000003506)	PKN1 (ENSPPRG00000005767)	PTGER1 (ENSPPRG00000006114)	GIPC1 (ENSPPRG00000006660)	DNAJB1 (ENSPPRG00000008135)	ENSPPRG00000008632
lion	MODERN SPECIES	2	TRMT1 (ENSPLOG00000016470)	NACC1 (ENSPLOG00000016708)	STX10 (ENSPLOG00000016759)	IER2 (ENSPLOG00000016822)	CACNA1A (ENSPLOG00000017530)	YJU2B (ENSPLOG00000021795)	MRI1 (ENSPLOG00000021817)	C19orf53 (ENSPLOG00000021831)	ZSWIM4 (ENSPLOG00000021842)	NANOS3 (ENSPLOG00000021885)	ENSPLOG00000021891	CC2D1A (ENSPLOG00000022083)	PODNL1 (ENSPLOG00000022445)	DCAF15 (ENSPLOG00000022465)	RFX1 (ENSPLOG00000022475)	RLN3 (ENSPLOG00000022484) ##22	IL27RA (ENSPLOG00000022499)	PALM3 (ENSPLOG00000022520)	MISP3 (ENSPLOG00000022524)	C19orf67 (ENSPLOG00000022526)	ENSPLOG00000022530	PRKACA (ENSPLOG00000022536)	ASF1B (ENSPLOG00000022545)	ADGRL1 (ENSPLOG00000022557)	ADGRE5 (ENSPLOG00000022577)	DDX39A (ENSPLOG00000022592)	PKN1 (ENSPLOG00000022596)	PTGER1 (ENSPLOG00000022603)	GIPC1 (ENSPLOG00000022605)	DNAJB1 (ENSPLOG00000022608)	ENSPLOG00000022614
Cat	MODERN SPECIES	1	ENSFCAG00000000482	TRMT1 (ENSFCAG00000000483)	NACC1 (ENSFCAG00000025613)	STX10 (ENSFCAG00000000484)	IER2 (ENSFCAG00000000485)	CACNA1A (ENSFCAG00000000486)	MRI1 (ENSFCAG00000011508)	ENSFCAG00000044597	ZSWIM4 (ENSFCAG00000003715)	NANOS3 (ENSFCAG00000003717)	BRME1 (ENSFCAG00000003718)	CC2D1A (ENSFCAG00000003719)	PODNL1 (ENSFCAG00000003720)	DCAF15 (ENSFCAG00000014364)	RFX1 (ENSFCAG00000003721)	RLN3 (ENSFCAG00000027164) ##22	PALM3 (ENSFCAG00000041444)	IL27RA (ENSFCAG00000003723)	MISP3 (ENSFCAG00000040950)	CA2H19orf67 (ENSFCAG00000009466)	ENSFCAG00000026810	PRKACA (ENSFCAG00000025137)	ASF1B (ENSFCAG00000023314)	ADGRL1 (ENSFCAG00000003727)	ENSFCAG00000035484	ADGRE5 (ENSFCAG00000013486)	DDX39A (ENSFCAG00000013488)	PKN1 (ENSFCAG00000013492)	PTGER1 (ENSFCAG00000044590)	GIPC1 (ENSFCAG00000013495)	DNAJB1 (ENSFCAG00000033551)
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Suina	ANCESTRAL SPECIES	16	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b
Chacoan peccary	MODERN SPECIES	769	TRMT1 (ENSCWAG00000001026)	NACC1 (ENSCWAG00000001107)	STX10 (ENSCWAG00000001131)	IER2 (ENSCWAG00000001159)	CACNA1A (ENSCWAG00000001583)	YJU2B (ENSCWAG00000005691)	MRI1 (ENSCWAG00000005715)	C19orf53 (ENSCWAG00000005735)	ZSWIM4 (ENSCWAG00000005771)	NANOS3 (ENSCWAG00000005863)	ENSCWAG00000005882	CC2D1A (ENSCWAG00000005927)	PODNL1 (ENSCWAG00000005980)	DCAF15 (ENSCWAG00000006021)	RFX1 (ENSCWAG00000006056)	RLN3 (ENSCWAG00000006130) ##22	IL27RA (ENSCWAG00000006159)	PALM3 (ENSCWAG00000006223)	MISP3 (ENSCWAG00000006355)	C19orf67 (ENSCWAG00000006377)	ENSCWAG00000006416	PRKACA (ENSCWAG00000006513)	ASF1B (ENSCWAG00000006659)	ADGRL1 (ENSCWAG00000006767)	ADGRE5 (ENSCWAG00000006860)	DDX39A (ENSCWAG00000006956)	PKN1 (ENSCWAG00000007028)	GIPC1 (ENSCWAG00000007165)	DNAJB1 (ENSCWAG00000007194)	TECR (ENSCWAG00000007221)	NDUFB7 (ENSCWAG00000007289)
Pig	MODERN SPECIES	10	NACC1 (ENSSSCG00000013751)	STX10 (ENSSSCG00000013752)	IER2 (ENSSSCG00000013753)	CACNA1A (ENSSSCG00000013754)	YJU2B (ENSSSCG00000013755)	MRI1 (ENSSSCG00000013756)	C19orf53 (ENSSSCG00000013757)	ZSWIM4 (ENSSSCG00000013758)	NANOS3 (ENSSSCG00000013759)	ENSSSCG00000013760	CC2D1A (ENSSSCG00000013761)	PODNL1 (ENSSSCG00000013762)	DCAF15 (ENSSSCG00000013763)	RFX1 (ENSSSCG00000013764)	ENSSSCG00000045290	RLN3 (ENSSSCG00000013765) ##22	IL27RA (ENSSSCG00000013766)	PALM3 (ENSSSCG00000013767)	ENSSSCG00000013768	C19orf67 (ENSSSCG00000013769)	ENSSSCG00000033298	PRKACA (ENSSSCG00000013771)	ASF1B (ENSSSCG00000013772)	ADGRL1 (ENSSSCG00000013773)	ADGRE5 (ENSSSCG00000013775)	DDX39A (ENSSSCG00000013776)	PKN1 (ENSSSCG00000013779)	PTGER1 (ENSSSCG00000013782)	GIPC1 (ENSSSCG00000032842)	DNAJB1 (ENSSSCG00000013784)	ENSSSCG00000031299
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Camelidae	ANCESTRAL SPECIES	69	ENSGT00940000162404	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759
Arabian camel	MODERN SPECIES	14	TRMT1 (ENSCDRG00005022165)	NACC1 (ENSCDRG00005022164)	STX10 (ENSCDRG00005022163)	IER2 (ENSCDRG00005022160)	CACNA1A (ENSCDRG00005018624)	YJU2B (ENSCDRG00005017211)	MRI1 (ENSCDRG00005017143)	C19orf53 (ENSCDRG00005017111)	ZSWIM4 (ENSCDRG00005017026)	NANOS3 (ENSCDRG00005016971)	ENSCDRG00005016955	ENSCDRG00005016926	PODNL1 (ENSCDRG00005016538)	DCAF15 (ENSCDRG00005016473)	RFX1 (ENSCDRG00005016416)	RLN3 (ENSCDRG00005016381) ##22	IL27RA (ENSCDRG00005016180)	PALM3 (ENSCDRG00005016115)	MISP3 (ENSCDRG00005016060)	C19orf67 (ENSCDRG00005016012)	PRKACA (ENSCDRG00005015856)	ASF1B (ENSCDRG00005015788)	ADGRL1 (ENSCDRG00005015480)	ADGRE5 (ENSCDRG00005015305)	DDX39A (ENSCDRG00005015189)	ENSCDRG00005014465	ENSCDRG00005014338	PTGER1 (ENSCDRG00005014294)	GIPC1 (ENSCDRG00005014240)	DNAJB1 (ENSCDRG00005014177)	TECR (ENSCDRG00005014045)
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Pecora	ANCESTRAL SPECIES		ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Percora_a	ANCESTRAL SPECIES		ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Bovidae	ANCESTRAL SPECIES		ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Caprinae	ANCESTRAL SPECIES	3	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a.e	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Goat	MODERN SPECIES	26	TRMT1 (ENSCHIG00000013569)	NACC1 (ENSCHIG00000023771)	STX10 (ENSCHIG00000018262)	IER2 (ENSCHIG00000007994)	CACNA1A (ENSCHIG00000016788)	YJU2B (ENSCHIG00000013694)	MRI1 (ENSCHIG00000019343)	C19orf53 (ENSCHIG00000018093)	ZSWIM4 (ENSCHIG00000007749)	NANOS3 (ENSCHIG00000007837)	ENSCHIG00000014143	CC2D1A (ENSCHIG00000018476)	PODNL1 (ENSCHIG00000021297)	DCAF15 (ENSCHIG00000014809)	RFX1 (ENSCHIG00000025598)	RLN3 (ENSCHIG00000003595) ##22	IL27RA (ENSCHIG00000014900)	PALM3 (ENSCHIG00000021116)	MISP3 (ENSCHIG00000009281)	ENSCHIG00000015338	PRKACA (ENSCHIG00000016501)	ENSCHIG00000016998	ADGRL1 (ENSCHIG00000025611)	ADGRE5 (ENSCHIG00000010425)	DDX39A (ENSCHIG00000019059)	PTGER1 (ENSCHIG00000024064)	PKN1 (ENSCHIG00000009176)	GIPC1 (ENSCHIG00000016305)	ENSCHIG00000023424	NDUFB7 (ENSCHIG00000013480)	TECR (ENSCHIG00000020365)
Rambouillet Sheep	MODERN SPECIES	21	PRKACA (ENSOARG00020001194)	ASF1B (ENSOARG00020001159)	ADGRL1 (ENSOARG00020000968)	ADGRE5 (ENSOARG00020000826)	DDX39A (ENSOARG00020000763)	PKN1 (ENSOARG00020000687)	PTGER1 (ENSOARG00020000667)	GIPC1 (ENSOARG00020000647)	DNAJB1 (ENSOARG00020000632)	ENSOARG00020000617	TECR (ENSOARG00020000551)	NDUFB7 (ENSOARG00020000517)	ENSOARG00020000495	ZNF333 (ENSOARG00020000475)	ENSOARG00020000456	ENSOARG00020000443 ##22	ENSOARG00020000434	ENSOARG00020000429	ENSOARG00020000417	ENSOARG00020000355	ENSOARG00020000328	ENSOARG00020000315	ENSOARG00020000301	ENSOARG00020000281	ENSOARG00020000254	OR7C2 (ENSOARG00020000235)	ENSOARG00020000217	ENSOARG00020000201	ENSOARG00020000148	ENSOARG00020000121	ENSOARG00020018966
Bovinae	ANCESTRAL SPECIES	2	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00390000010799.u.b.a.a.b	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Bos	ANCESTRAL SPECIES	3	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00940000161793.`b.b
Bos_a	ANCESTRAL SPECIES	57	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00940000161793.`b.b
Wild yak	MODERN SPECIES	122						YJU2B (ENSBMUG00000000597)	MRI1 (ENSBMUG00000000585)	ENSBMUG00000000557	ZSWIM4 (ENSBMUG00000000467)	NANOS3 (ENSBMUG00000000389)	ENSBMUG00000000366	CC2D1A (ENSBMUG00000000347)	PODNL1 (ENSBMUG00000000274)	DCAF15 (ENSBMUG00000000150)	RFX1 (ENSBMUG00000000093)	RLN3 (ENSBMUG00000018814) ##22	ENSBMUG00000018788	IL27RA (ENSBMUG00000018770)	PALM3 (ENSBMUG00000018718)	MISP3 (ENSBMUG00000018697)	C19orf67 (ENSBMUG00000018686)	ENSBMUG00000018679	PRKACA (ENSBMUG00000018657)	ASF1B (ENSBMUG00000018603)	ADGRL1 (ENSBMUG00000018535)	ADGRE5 (ENSBMUG00000018450)	DDX39A (ENSBMUG00000018158)	PKN1 (ENSBMUG00000017913)	GIPC1 (ENSBMUG00000017872)	DNAJB1 (ENSBMUG00000017852)	ENSBMUG00000017844
Domestic yak	MODERN SPECIES	27	ENSBGRG00000008808	NACC1 (ENSBGRG00000008843)	STX10 (ENSBGRG00000008914)	IER2 (ENSBGRG00000009223)	CACNA1A (ENSBGRG00000009642)	YJU2B (ENSBGRG00000021535)	MRI1 (ENSBGRG00000021573)	C19orf53 (ENSBGRG00000021611)	ZSWIM4 (ENSBGRG00000021668)	NANOS3 (ENSBGRG00000021964)	ENSBGRG00000021979	CC2D1A (ENSBGRG00000022053)	PODNL1 (ENSBGRG00000022916)	DCAF15 (ENSBGRG00000023126)	RFX1 (ENSBGRG00000023159)	RLN3 (ENSBGRG00000023271) ##22	IL27RA (ENSBGRG00000023291)	PALM3 (ENSBGRG00000023457)	MISP3 (ENSBGRG00000023479)	C19orf67 (ENSBGRG00000023503)	ENSBGRG00000023541	PRKACA (ENSBGRG00000023559)	ASF1B (ENSBGRG00000000398)	ENSBGRG00000000445	ADGRL1 (ENSBGRG00000000453)	ADGRE5 (ENSBGRG00000000526)	DDX39A (ENSBGRG00000000785)	PTGER1 (ENSBGRG00000000899)	GIPC1 (ENSBGRG00000000915)	ENSBGRG00000000944	ENSBGRG00000000966
Bos_b	ANCESTRAL SPECIES	2	ENSGT00530000063646.b.r	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740.s	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00530000063936.a	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00940000161793.`b.b
Hybrid Bos Indicus	MODERN SPECIES	26	TRMT1 (ENSBIXG00005022272)	STX10 (ENSBIXG00005006889)	IER2 (ENSBIXG00005003732)	CACNA1A (ENSBIXG00005021956)	ENSBIXG00005007354	YJU2B (ENSBIXG00005021066)	MRI1 (ENSBIXG00005021041)	ENSBIXG00005007352	ZSWIM4 (ENSBIXG00005021000)	NANOS3 (ENSBIXG00005020898)	ENSBIXG00005020888	CC2D1A (ENSBIXG00005020848)	PODNL1 (ENSBIXG00005020725)	DCAF15 (ENSBIXG00005003473)	RFX1 (ENSBIXG00005003471)	RLN3 (ENSBIXG00005020471) ##22	IL27RA (ENSBIXG00005020455)	PALM3 (ENSBIXG00005020377)	C19orf67 (ENSBIXG00005007724)	ENSBIXG00005020339	PRKACA (ENSBIXG00005003422)	ASF1B (ENSBIXG00005003397)	ADGRL1 (ENSBIXG00005003365)	ADGRE5 (ENSBIXG00005020089)	DDX39A (ENSBIXG00005020009)	PKN1 (ENSBIXG00005019962)	PTGER1 (ENSBIXG00005005530)	GIPC1 (ENSBIXG00005019893)	DNAJB1 (ENSBIXG00005003246)	ENSBIXG00005000030	TECR (ENSBIXG00005006594)
Cow	MODERN SPECIES	26	TRMT1 (ENSBTAG00000019325)	NACC1 (ENSBTAG00000016350)	STX10 (ENSBTAG00000016352)	IER2 (ENSBTAG00000016354)	CACNA1A (ENSBTAG00000014828)	YJU2B (ENSBTAG00000002516)	MRI1 (ENSBTAG00000002524)	C7H19orf53 (ENSBTAG00000002525)	ZSWIM4 (ENSBTAG00000002527)	NANOS3 (ENSBTAG00000000399)	BRME1 (ENSBTAG00000006064)	CC2D1A (ENSBTAG00000006068)	PODNL1 (ENSBTAG00000006073)	DCAF15 (ENSBTAG00000008841)	RFX1 (ENSBTAG00000008854)	RLN3 (ENSBTAG00000038437) ##22	IL27RA (ENSBTAG00000016933)	PALM3 (ENSBTAG00000046744)	MISP3 (ENSBTAG00000016936)	C7H19orf67 (ENSBTAG00000016937)	PRKACA (ENSBTAG00000006642)	ASF1B (ENSBTAG00000004085)	ADGRL1 (ENSBTAG00000003675)	ADGRE5 (ENSBTAG00000021818)	DDX39A (ENSBTAG00000021820)	PKN1 (ENSBTAG00000017037)	PTGER1 (ENSBTAG00000017041)	GIPC1 (ENSBTAG00000000764)	DNAJB1 (ENSBTAG00000016874)	ENSBTAG00000048525	TECR (ENSBTAG00000012632)
American bison	MODERN SPECIES	3279	LYL1 (ENSBBBG00000019215)	TRMT1 (ENSBBBG00000019284)	NACC1 (ENSBBBG00000019295)	STX10 (ENSBBBG00000005006)	IER2 (ENSBBBG00000005013)	CACNA1A (ENSBBBG00000019380)	YJU2B (ENSBBBG00000005153)	MRI1 (ENSBBBG00000019433)	C19orf53 (ENSBBBG00000019446)	ZSWIM4 (ENSBBBG00000007955)	ENSBBBG00000019499	CC2D1A (ENSBBBG00000019553)	PODNL1 (ENSBBBG00000019637)	DCAF15 (ENSBBBG00000005189)	RFX1 (ENSBBBG00000005338)	RLN3 (ENSBBBG00000005169) ##22	ENSBBBG00000019803	IL27RA (ENSBBBG00000005137)	PALM3 (ENSBBBG00000005373)	C19orf67 (ENSBBBG00000019858)	ENSBBBG00000019866	PRKACA (ENSBBBG00000005394)	ASF1B (ENSBBBG00000019950)	ADGRL1 (ENSBBBG00000005411)	ADGRE5 (ENSBBBG00000020124)	DDX39A (ENSBBBG00000005075)	PKN1 (ENSBBBG00000020183)	PTGER1 (ENSBBBG00000020190)	GIPC1 (ENSBBBG00000020208)	DNAJB1 (ENSBBBG00000020214)	ENSBBBG00000020221
Siberian musk deer	MODERN SPECIES	34	TRMT1 (ENSMMSG00000018011)	NACC1 (ENSMMSG00000018197)	STX10 (ENSMMSG00000018243)	IER2 (ENSMMSG00000018376)	CACNA1A (ENSMMSG00000019062)	YJU2B (ENSMMSG00000024343)	MRI1 (ENSMMSG00000024345)	C19orf53 (ENSMMSG00000024346)	ZSWIM4 (ENSMMSG00000024347)	NANOS3 (ENSMMSG00000024352)	ENSMMSG00000024353	CC2D1A (ENSMMSG00000024357)	PODNL1 (ENSMMSG00000024362)	DCAF15 (ENSMMSG00000024364)	RFX1 (ENSMMSG00000024366)	RLN3 (ENSMMSG00000007549) ##22	IL27RA (ENSMMSG00000007566)	PALM3 (ENSMMSG00000007601)	MISP3 (ENSMMSG00000007622)	C19orf67 (ENSMMSG00000007644)	ENSMMSG00000007697	PRKACA (ENSMMSG00000007781)	ASF1B (ENSMMSG00000007873)	ADGRL1 (ENSMMSG00000007939)	ADGRE5 (ENSMMSG00000008090)	DDX39A (ENSMMSG00000008311)	PKN1 (ENSMMSG00000008406)	PTGER1 (ENSMMSG00000008566)	GIPC1 (ENSMMSG00000008589)	DNAJB1 (ENSMMSG00000008644)	ENSMMSG00000008667
Yarkand deer	MODERN SPECIES	32	TRMT1 (ENSCHYG00000016033)	NACC1 (ENSCHYG00000015883)	STX10 (ENSCHYG00000015356)	IER2 (ENSCHYG00000015316)	CACNA1A (ENSCHYG00000009142)	YJU2B (ENSCHYG00000008722)	MRI1 (ENSCHYG00000008660)	C19orf53 (ENSCHYG00000008638)	ZSWIM4 (ENSCHYG00000008457)	NANOS3 (ENSCHYG00000008374)	ENSCHYG00000008348	CC2D1A (ENSCHYG00000008230)	PODNL1 (ENSCHYG00000008102)	DCAF15 (ENSCHYG00000007994)	RFX1 (ENSCHYG00000007922)	RLN3 (ENSCHYG00000007881) ##22	ENSCHYG00000007859	PALM3 (ENSCHYG00000007837)	IL27RA (ENSCHYG00000007720)	MISP3 (ENSCHYG00000007695)	C19orf67 (ENSCHYG00000007667)	ENSCHYG00000007646	PRKACA (ENSCHYG00000007558)	ASF1B (ENSCHYG00000007484)	ADGRL1 (ENSCHYG00000007185)	ADGRE5 (ENSCHYG00000006893)	DDX39A (ENSCHYG00000006844)	PKN1 (ENSCHYG00000006584)	PTGER1 (ENSCHYG00000006535)	GIPC1 (ENSCHYG00000006503)	ENSCHYG00000006485
Cetacea	ANCESTRAL SPECIES	1	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Vaquita	MODERN SPECIES	14	TRMT1 (ENSPSNG00000005699)	NACC1 (ENSPSNG00000005645)	STX10 (ENSPSNG00000005596)	IER2 (ENSPSNG00000005553)	CACNA1A (ENSPSNG00000003893)	YJU2B (ENSPSNG00000003221)	C19orf53 (ENSPSNG00000003199)	MRI1 (ENSPSNG00000003184)	ZSWIM4 (ENSPSNG00000003154)	NANOS3 (ENSPSNG00000003112)	ENSPSNG00000003101	CC2D1A (ENSPSNG00000002978)	PODNL1 (ENSPSNG00000002942)	DCAF15 (ENSPSNG00000002892)	RFX1 (ENSPSNG00000002816)	RLN3 (ENSPSNG00000002774) ##22	IL27RA (ENSPSNG00000002738)	PALM3 (ENSPSNG00000002710)	MISP3 (ENSPSNG00000002687)	C19orf67 (ENSPSNG00000002664)	ENSPSNG00000002646	PRKACA (ENSPSNG00000002590)	ASF1B (ENSPSNG00000002544)	ENSPSNG00000002523	ADGRL1 (ENSPSNG00000002424)	ADGRE5 (ENSPSNG00000002347)	DDX39A (ENSPSNG00000002289)	PKN1 (ENSPSNG00000002181)	PTGER1 (ENSPSNG00000002125)	GIPC1 (ENSPSNG00000002103)	DNAJB1 (ENSPSNG00000002073)
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00530000063646.b	ENSGT00940000159327	ENSGT00940000163101	ENSGT00900000141021.b.b	ENSGT00940000156518.C	ENSGT00530000063615.b	ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000016855	ENSGT00390000009595.b	ENSGT00940000162059	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00700000104610	ENSGT00390000009016	ENSGT00940000154739.A	ENSGT00390000009916	ENSGT00940000162952	ENSGT00940000162186	ENSGT00390000004692.d.a	ENSGT00520000059915	ENSGT00940000159684	ENSGT00940000160578	ENSGT00940000154912	ENSGT00940000154990	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312
Narwhal	MODERN SPECIES	298	TRMT1 (ENSMMNG00015005352)	NACC1 (ENSMMNG00015005326)	STX10 (ENSMMNG00015005279)	IER2 (ENSMMNG00015005251)	CACNA1A (ENSMMNG00015004782)	YJU2B (ENSMMNG00015004541)	MRI1 (ENSMMNG00015004525)	C19orf53 (ENSMMNG00015004514)	ZSWIM4 (ENSMMNG00015004504)	NANOS3 (ENSMMNG00015004460)	ENSMMNG00015004453	CC2D1A (ENSMMNG00015004418)	PODNL1 (ENSMMNG00015004384)	DCAF15 (ENSMMNG00015004359)	RFX1 (ENSMMNG00015004291)	RLN3 (ENSMMNG00015004256) ##22	IL27RA (ENSMMNG00015004231)	PALM3 (ENSMMNG00015004214)	ENSMMNG00015004199	C19orf67 (ENSMMNG00015004181)	SAMD1 (ENSMMNG00015004164)	PRKACA (ENSMMNG00015004129)	ASF1B (ENSMMNG00015004096)	ENSMMNG00015004077	ADGRL1 (ENSMMNG00015004047)	ADGRE5 (ENSMMNG00015003986)	DDX39A (ENSMMNG00015003930)	PKN1 (ENSMMNG00015003762)	PTGER1 (ENSMMNG00015003715)	GIPC1 (ENSMMNG00015003691)	DNAJB1 (ENSMMNG00015003664)
Blue whale	MODERN SPECIES	14	TRMT1 (ENSBMSG00010006254)	NACC1 (ENSBMSG00010006289)	STX10 (ENSBMSG00010006307)	IER2 (ENSBMSG00010006332)	CACNA1A (ENSBMSG00010007066)	YJU2B (ENSBMSG00010011086)	MRI1 (ENSBMSG00010011099)	C19orf53 (ENSBMSG00010011111)	ZSWIM4 (ENSBMSG00010011126)	NANOS3 (ENSBMSG00010011182)	ENSBMSG00010011193	CC2D1A (ENSBMSG00010011212)	PODNL1 (ENSBMSG00010011253)	DCAF15 (ENSBMSG00010011283)	RFX1 (ENSBMSG00010011328)	RLN3 (ENSBMSG00010011363) ##22	IL27RA (ENSBMSG00010011379)	PALM3 (ENSBMSG00010011405)	ENSBMSG00010011429	C19orf67 (ENSBMSG00010011438)	ENSBMSG00010011456	PRKACA (ENSBMSG00010011474)	ASF1B (ENSBMSG00010011510)	ADGRL1 (ENSBMSG00010011541)	ENSBMSG00010011582	ADGRE5 (ENSBMSG00010011593)	DDX39A (ENSBMSG00010011608)	PKN1 (ENSBMSG00010011639)	PTGER1 (ENSBMSG00010011682)	GIPC1 (ENSBMSG00010011689)	DNAJB1 (ENSBMSG00010011696)
Anura	ANCESTRAL SPECIES	162									ENSGT00390000013732	ENSGT00390000011740	ENSGT00940000162102	ENSGT00950000183135.A.b	ENSGT00390000009595.b	ENSGT00390000011987	ENSGT01050000244879.a.b	ENSGT00940000154396.b.a ##22	ENSGT00990000204330	ENSGT01100000266472	ENSGT00390000005830	ENSGT00390000007688	ENSGT01050000244941.B.d	ENSGT00950000183036.a.a	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00490000043442	ENSGT00940000157892.b	ENSGT00940000155151.b	ENSGT00390000017201	ENSGT00940000163583	ENSGT00530000063497.b	ENSGT00940000154682.C.s.a.b
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1316																ENSLLEG00000028579 ##22
Leishan spiny toad	MODERN SPECIES	6	TRIR (ENSLLEG00000018682)	GET3 (ENSLLEG00000018363)	TNPO2 (ENSLLEG00000017229)	ENSLLEG00000017146	FBXW9 (ENSLLEG00000017029)	DHPS (ENSLLEG00000016722)	WDR83 (ENSLLEG00000016542)	WDR83OS (ENSLLEG00000016451)	ENSLLEG00000016042	TRMT1 (ENSLLEG00000015821)	ALKBH7 (ENSLLEG00000015770)	PSPN (ENSLLEG00000015735)	CC2D1A (ENSLLEG00000015232)	DCAF15 (ENSLLEG00000015084)	RFX1 (ENSLLEG00000014605)	ENSLLEG00000014549 ##22	ENSLLEG00000014272 #15	ENSLLEG00000014216	ENSLLEG00000014097	ENSLLEG00000013954	ENSLLEG00000013870	ENSLLEG00000013842	NACC1 (ENSLLEG00000013805)	STX10 (ENSLLEG00000013744)	IER2 (ENSLLEG00000013715)	YJU2B (ENSLLEG00000013539)	ENSLLEG00000013312	ENSLLEG00000013269	CACNA1A (ENSLLEG00000013048)	ENSLLEG00000012941	ENSLLEG00000012514
Frog	MODERN SPECIES	3	c3p1 (ENSXETG00000048045)	ENSXETG00000042646	tubb4a (ENSXETG00000021860)	dennd1c (ENSXETG00000024511)	crb3 (ENSXETG00000024510)	slc25a23 (ENSXETG00000024509)	khsrp (ENSXETG00000021862)	mri1 (ENSXETG00000021867)	c19orf53 (ENSXETG00000038713)	zswim4 (ENSXETG00000021870)	NANOS3 (ENSXETG00000021874)	cc2d1a (ENSXETG00000005556)	ENSXETG00000037742	dcaf15 (ENSXETG00000005570)	rfx1 (ENSXETG00000005567)	rln3 (ENSXETG00000033085) ##22	ENSXETG00000035478 #15	palm3 (ENSXETG00000005574)	misp3 (ENSXETG00000038750)	clpp (ENSXETG00000005576)	ENSXETG00000032234	alkbh7 (ENSXETG00000005578)	PSPN (ENSXETG00000038258)	gtf2f1 (ENSXETG00000005579)	yju2b (ENSXETG00000025830)	surf4.1 (ENSXETG00000005583)	ENSXETG00000046242	cacna1a (ENSXETG00000005585)	ier2 (ENSXETG00000041552)	stx10 (ENSXETG00000005589)	nacc1 (ENSXETG00000005594)
Coelacanth	MODERN SPECIES	419	GADD45GIP1 (ENSLACG00000015380)	zgc:158403 (ENSLACG00000015276)	RAD23A (ENSLACG00000014966)	ENSLACG00000022668	RFX1 (ENSLACG00000022433)	DCAF15 (ENSLACG00000014304)	PODNL1 (ENSLACG00000014115)	CC2D1A (ENSLACG00000013556)	ENSLACG00000013365	NANOS3 (ENSLACG00000013286)	ENSLACG00000011962	ENSLACG00000010478	ENSLACG00000010459	SLC44A2 (ENSLACG00000005761)	ILF3 (ENSLACG00000003810)	rln3b (ENSLACG00000003121) ##22
Euteleostomi	ANCESTRAL SPECIES	88	ENSGT00950000182916.a.b.a.b	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d
Sarcopterygii	ANCESTRAL SPECIES	81	ENSGT00950000182916.a.b.a.b	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420
Coelacanth	MODERN SPECIES	1006										GNG7 (ENSLACG00000006783)	GADD45B (ENSLACG00000009526) ##12	ENSLACG00000009808	ENSLACG00000010224	ENSLACG00000010584	FCHO1 (ENSLACG00000011956)	ENSLACG00000022123 ##22	ENSLACG00000013591
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00950000182916.a.b.a.b	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a
Anura	ANCESTRAL SPECIES	125											ENSGT00390000018319.a.b.b.b	ENSGT00940000160221	ENSGT00940000159134.w.b	ENSGT00940000160489	ENSGT00940000159134.w.a	ENSGT00940000154396.a ##22	ENSGT00940000159489	ENSGT00390000012482	ENSGT00950000182904.a.b.b	ENSGT00940000165052	ENSGT00940000160748	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399	ENSGT01050000244840.A.b.a.s	ENSGT00940000159560	ENSGT00940000168675
Frog	MODERN SPECIES		ENSXETG00000046313	cplx1 (ENSXETG00000034866)	pcgf3 (ENSXETG00000004916)	ENSXETG00000049183	slc49a3 (ENSXETG00000004914)	dgkq (ENSXETG00000004913)	ENSXETG00000043669	ENSXETG00000034955	ENSXETG00000004912	ENSXETG00000037896	MAP1S (ENSXETG00000036392)	b3gnt3.1 (ENSXETG00000040687)	fcho1 (ENSXETG00000016431)	b3gnt3.2 (ENSXETG00000016436)	ENSXETG00000042436	rflcii (ENSXETG00000038097) ##22	jak3 (ENSXETG00000016438)	slc5a5 (ENSXETG00000013546)	ccdc124 (ENSXETG00000013543)	kcnn1 (ENSXETG00000013542)	ocel1 (ENSXETG00000013539)	ocel1.2 (ENSXETG00000013536)	nr2f6 (ENSXETG00000013531)	ENSXETG00000046959	babam1 (ENSXETG00000025571)	insr (ENSXETG00000013518)	use1 (ENSXETG00000013513)	nwd1 (ENSXETG00000038824)	sin3b (ENSXETG00000013501)	f2rl3 (ENSXETG00000013500)	cpamd8 (ENSXETG00000032091)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000016350	ENSLLEG00000016374	ENSLLEG00000016392	CORO2A (ENSLLEG00000016450)	ANP32B (ENSLLEG00000017044)	ENSLLEG00000017169	TRMO (ENSLLEG00000017189)	ENSLLEG00000017235	MAP1S (ENSLLEG00000017253)	ENSLLEG00000017343	ENSLLEG00000017370	ENSLLEG00000017424	ENSLLEG00000017467	ENSLLEG00000018257	ENSLLEG00000018308	ENSLLEG00000018377 ##22	ENSLLEG00000018419	SLC5A5 (ENSLLEG00000018890)	ENSLLEG00000019036	ENSLLEG00000019057	ENSLLEG00000019079	CCDC124 (ENSLLEG00000019104)	KCNN1 (ENSLLEG00000019159)	ENSLLEG00000019293	ENSLLEG00000019333	ENSLLEG00000019417	ENSLLEG00000019464	NR2F6 (ENSLLEG00000019522)	ENSLLEG00000019608	BABAM1 (ENSLLEG00000020048)	INSR (ENSLLEG00000020146)
Amniota	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Aves	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00950000182916.a.b.a.b.b	ENSGT00940000155586.B	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489
Anatidae	ANCESTRAL SPECIES	20						ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000154886.a.a
Pink-footed goose	MODERN SPECIES	226				ENSABRG00000021796	KDM4C (ENSABRG00000021794)	GLDC (ENSABRG00000021793)	UHRF2 (ENSABRG00000021791)	KIAA2026 (ENSABRG00000021786)	MLANA (ENSABRG00000021784)	ENSABRG00000021780	ERMP1 (ENSABRG00000021779)	RIC1 (ENSABRG00000021746)	PDCD1LG2 (ENSABRG00000021731)	ENSABRG00000021729	PLGRKT (ENSABRG00000021727)	ENSABRG00000021725 ##22	JAK2 (ENSABRG00000021718)	RCL1 (ENSABRG00000021715)	AK3 (ENSABRG00000021713)	CDC37L1 (ENSABRG00000021710)
Duck	MODERN SPECIES	4281	BNC2 (ENSAPLG00000008295)	PTPRD (ENSAPLG00000012170)	ENSAPLG00000023506	KDM4C (ENSAPLG00000012301)	GLDC (ENSAPLG00000012359)	UHRF2 (ENSAPLG00000013042)	KIAA2026 (ENSAPLG00000003748)	MLANA (ENSAPLG00000003877)	ENSAPLG00000003923	ENSAPLG00000030581	ENSAPLG00000028854	RIC1 (ENSAPLG00000004154)	PDCD1LG2 (ENSAPLG00000004593)	ENSAPLG00000004669	PLGRKT (ENSAPLG00000018947)	ENSAPLG00000011419 ##22	JAK2 (ENSAPLG00000004748)	RCL1 (ENSAPLG00000006031)	AK3 (ENSAPLG00000006356)	CDC37L1 (ENSAPLG00000006614)	SLC1A1 (ENSAPLG00000015022)	GLIS3 (ENSAPLG00000014844)	RFX3 (ENSAPLG00000011096)	ENSAPLG00000019362	PUM3 (ENSAPLG00000002920)	KCNV2 (ENSAPLG00000018126)	ENSAPLG00000015474	SMARCA2 (ENSAPLG00000013873)	DMRT2 (ENSAPLG00000013872)	DMRT3 (ENSAPLG00000013743)	KANK1 (ENSAPLG00000020411)
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b	ENSGT00940000155586.B.jb	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a.db.b
Japanese quail	MODERN SPECIES	699	TYRP1 (ENSCJPG00005003297)	ENSCJPG00005003289	ENSCJPG00005003285	PTPRD (ENSCJPG00005003278)	ENSCJPG00005003265	ENSCJPG00005003260	GLDC (ENSCJPG00005003257)	UHRF2 (ENSCJPG00005003255)	KIAA2026 (ENSCJPG00005003247)	MLANA (ENSCJPG00005003245)	ENSCJPG00005003242	ERMP1 (ENSCJPG00005003237)	RIC1 (ENSCJPG00005003232)	PDCD1LG2 (ENSCJPG00005003231)	ENSCJPG00005003230	ENSCJPG00005003229 ##22	JAK2 (ENSCJPG00005003214)	RCL1 (ENSCJPG00005003205)	AK3 (ENSCJPG00005003204)	CDC37L1 (ENSCJPG00005003200)	SLC1A1 (ENSCJPG00005003195)	GLIS3 (ENSCJPG00005003188)	RFX3 (ENSCJPG00005003180)	PUM3 (ENSCJPG00005003170)	KCNV2 (ENSCJPG00005003166)	VLDLR (ENSCJPG00005002212)	SMARCA2 (ENSCJPG00005002199)	DMRT2 (ENSCJPG00005002194)	DMRT3 (ENSCJPG00005002191)	DMRT1 (ENSCJPG00005002189)	KANK1 (ENSCJPG00005002171)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b.b	ENSGT00940000155586.B.jb	ENSGT00530000063790.b	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000154886.a.a.db.a	ENSGT00940000155876.e.a
Chicken	MODERN SPECIES	131	MPDZ (ENSGALG00010016251)	LURAP1L (ENSGALG00010016139)	TYRP1 (ENSGALG00010014092)	ENSGALG00010015966	PTPRD (ENSGALG00010012063)	KDM4C (ENSGALG00010011253)	GLDC (ENSGALG00010012973)	UHRF2 (ENSGALG00010012965)	KIAA2026 (ENSGALG00010012952)	MLANA (ENSGALG00010012923)	ENSGALG00010012919	ERMP1 (ENSGALG00010012904)	RIC1 (ENSGALG00010012889)	PDCD1LG2 (ENSGALG00010013312)	CD274 (ENSGALG00010012871)	RLN3 (ENSGALG00010012847) ##22	JAK2 (ENSGALG00010012833)	RCL1 (ENSGALG00010011222)	AK3 (ENSGALG00010011143)	CDC37L1 (ENSGALG00010011133)	SLC1A1 (ENSGALG00010011937)	GLIS3 (ENSGALG00010010147)	RFX3 (ENSGALG00010011873)	PUM3 (ENSGALG00010011384)	KCNV2 (ENSGALG00010010198)	VLDLR (ENSGALG00010011837)	SMARCA2 (ENSGALG00010011808)	DMRT2 (ENSGALG00010011482)	ENSGALG00010011462	DMRT1 (ENSGALG00010011437)	KANK1 (ENSGALG00010011351)
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000154396.a ##22
Platypus	MODERN SPECIES	84	ENSOANG00000044008 ##20	PLPP2 (ENSOANG00000048271)	ENSOANG00000039271	ENSOANG00000008780	ENSOANG00000043023	ENSOANG00000039193	GNA15 (ENSOANG00000001318)	S1PR4 (ENSOANG00000007015)	NCLN (ENSOANG00000003212)	CELF5 (ENSOANG00000043136)	ENSOANG00000037797	ENSOANG00000006364	ENSOANG00000038182	FCHO1 (ENSOANG00000050662)	ENSOANG00000002522	RFLCII (ENSOANG00000050111) ##22	JAK3 (ENSOANG00000005345)	SLC5A5 (ENSOANG00000042719)	ENSOANG00000046007	KCNN1 (ENSOANG00000015602)	ENSOANG00000043276	ENSOANG00000040234	NR2F6 (ENSOANG00000010421)	ENSOANG00000008074	BABAM1 (ENSOANG00000041344)	ENSOANG00000039006	ABHD8 (ENSOANG00000014712)	ENSOANG00000050876	ENSOANG00000040368	ENSOANG00000037822	ANO8 (ENSOANG00000013731)
Actinopterygii	ANCESTRAL SPECIES	249							ENSGT00940000166601	ENSGT00390000017970	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000159527	ENSGT00940000156266
Neopterygii	ANCESTRAL SPECIES	183	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000153771.B	ENSGT00940000157066	ENSGT00940000166601	ENSGT00390000017970	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000159527	ENSGT01030000234626.D	ENSGT00940000159394
Osteoglossocephalai	ANCESTRAL SPECIES	202	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000157066.p	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00390000006843	ENSGT00950000186109	ENSGT00940000155640.a	ENSGT00940000161928	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158646	ENSGT00390000009349
Osteoglossiformes	ANCESTRAL SPECIES	306								ENSGT00940000166601	ENSGT00390000008296.b.b.e	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955.e	ENSGT00940000161373.bb	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00390000006843	ENSGT00940000161928	ENSGT01100000263580	ENSGT00940000158646	ENSGT00390000009349
Asian bonytongue	MODERN SPECIES	21	nop14 (ENSSFOG00015022736)	ENSSFOG00015022750	klf4 (ENSSFOG00015022762)	RAD23B (ENSSFOG00015022776)	ZNF462 (ENSSFOG00015022798)	TMEM38B (ENSSFOG00015022812)	PRAG1 (ENSSFOG00015022815)	oaz1b (ENSSFOG00015031885)	UHRF2 (ENSSFOG00015022837)	KIAA2026 (ENSSFOG00015022871)	MLANA (ENSSFOG00015022879)	ERMP1 (ENSSFOG00015022882)	RIC1 (ENSSFOG00015022905)	ENSSFOG00015022947	plgrkt (ENSSFOG00015025421)	ENSSFOG00015022964 ##22	jak2a (ENSSFOG00015022973)	rcl1 (ENSSFOG00015023020)	ak3 (ENSSFOG00015023033)	cdc37l1 (ENSSFOG00015032511)	ENSSFOG00015023063	nrarpa (ENSSFOG00015025355)	ENSSFOG00015023097	lcn15 (ENSSFOG00015024244)	slc27a4 (ENSSFOG00015000115)	swi5 (ENSSFOG00015000214)	ADAMTSL2 (ENSSFOG00015000229)	FAM163B (ENSSFOG00015000438)	dbh (ENSSFOG00015000449)	sardh (ENSSFOG00015000505)	CERCAM (ENSSFOG00015000611)
P. kingsleyae	MODERN SPECIES	269					ENSPKIG00000020648	PRAG1 (ENSPKIG00000020654)	oaz1b (ENSPKIG00000020671)	ENSPKIG00000020691	KIAA2026 (ENSPKIG00000020722)	MLANA (ENSPKIG00000020736)	ERMP1 (ENSPKIG00000020759)	RIC1 (ENSPKIG00000020816)	ENSPKIG00000020903	ENSPKIG00000020916	plgrkt (ENSPKIG00000020935)	rln1 (ENSPKIG00000020961) ##22	jak2a (ENSPKIG00000020986)	rcl1 (ENSPKIG00000021022)	ak3 (ENSPKIG00000021048)	cdc37l1 (ENSPKIG00000021068)	ENSPKIG00000021103	nrarpa (ENSPKIG00000021164)	lcn15 (ENSPKIG00000021204)	slc27a4 (ENSPKIG00000021232)	swi5 (ENSPKIG00000021253)	ADAMTSL2 (ENSPKIG00000021270)	FAM163B (ENSPKIG00000021301)	dbh (ENSPKIG00000021325)	sardh (ENSPKIG00000021365)	ENSPKIG00000021418	CERCAM (ENSPKIG00000021433)
Clupeocephala	ANCESTRAL SPECIES	8	ENSGT00940000166449	ENSGT00950000183175.B.b	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000157066.p	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00390000006843	ENSGT00950000186109	ENSGT00940000164450.a	ENSGT00940000155640.a	ENSGT00940000161928	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158646	ENSGT00390000009349	ENSGT00940000159387.f	ENSGT00530000063085.B
Otomorpha	ANCESTRAL SPECIES	17	ENSGT00940000158581	ENSGT00390000017459	ENSGT00940000166449	ENSGT00950000183175.B.b	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000157066.p	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00940000156354.p	ENSGT00510000046704.b.a.c	ENSGT00390000003122.a.a.a	ENSGT00940000158176	ENSGT00940000158270	ENSGT00990000203589.b.b	ENSGT00940000157310	ENSGT00940000157603	ENSGT00390000009710	ENSGT00940000159952.a.b	ENSGT00390000017026	ENSGT00940000157817
Otophysi	ANCESTRAL SPECIES	413														ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867
Characiphysae	ANCESTRAL SPECIES	79	ENSGT00870000136493.c	ENSGT00940000164655	ENSGT00940000159028	ENSGT00940000156685	ENSGT00940000159136	ENSGT00940000156722.a	ENSGT00940000154245.A.kb	ENSGT00940000158396.g	ENSGT00940000156818	ENSGT00940000158185	ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000177481	ENSGT00940000153181	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00390000012762.u	ENSGT00940000158491.b	ENSGT00940000163584.a	ENSGT00940000154900	ENSGT01090000261095	ENSGT00510000047097	ENSGT00940000156125	ENSGT00940000154851.B.b	ENSGT00940000156873	ENSGT00940000160524	ENSGT00530000063340	ENSGT00940000154437.f
Characiphysae_b	ANCESTRAL SPECIES	86						ENSGT00940000158396.g	ENSGT00940000156818	ENSGT00940000164716.C.d	ENSGT00390000016221	ENSGT00940000158185	ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000177481	ENSGT00940000153181	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00390000012762.u	ENSGT00940000158491.b	ENSGT00940000163584.a	ENSGT00940000154900	ENSGT01090000261095	ENSGT00510000047097	ENSGT00940000156125	ENSGT00940000154851.B.b	ENSGT00940000156873	ENSGT00940000160524	ENSGT00530000063340	ENSGT00940000154437.f
Characoidei	ANCESTRAL SPECIES	300											ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000177481	ENSGT00940000153181	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00390000012762.u	ENSGT00940000158491.b
Red-bellied piranha	MODERN SPECIES	1018																rln1 (ENSPNAG00000017498) ##22	jak2a (ENSPNAG00000017477)	DTWD2 (ENSPNAG00000017344)	ENSPNAG00000017304
Mexicana tetra	MODERN SPECIES	5	ube2g1b (ENSAMXG00000016275)	arpc3 (ENSAMXG00000042266)	gpn3 (ENSAMXG00000016293)	BCR (ENSAMXG00000016321)	GFI1B (ENSAMXG00000037544)	SH3PXD2B (ENSAMXG00000016359)	stk10 (ENSAMXG00000016383)	ENSAMXG00000038847	ENSAMXG00000016406	ENSAMXG00000042150	zer1 (ENSAMXG00000016425)	TBC1D13 (ENSAMXG00000033986)	ENSAMXG00000034143	ralgds (ENSAMXG00000016474)	plgrkt (ENSAMXG00000029991)	rln1 (ENSAMXG00000039024) ##22	jak2a (ENSAMXG00000016504)	stard4 (ENSAMXG00000039662)	stard4 (ENSAMXG00000037985)	DTWD2 (ENSAMXG00000016515)	ENSAMXG00000016517	rtknb (ENSAMXG00000016518)	ENSAMXG00000034937	arid6 (ENSAMXG00000043853)	ubap1 (ENSAMXG00000031763)	ube2r2 (ENSAMXG00000006620)	nudt2 (ENSAMXG00000037843)	rfesd (ENSAMXG00000042782)	glrx (ENSAMXG00000031301)	ENSAMXG00000006642	ell2 (ENSAMXG00000006661)
Channel catfish	MODERN SPECIES	9	rx3 (ENSIPUG00000016474)	CPLX4 (ENSIPUG00000016489)	lman1 (ENSIPUG00000016515)	ccbe1 (ENSIPUG00000016569)	HCN1 (ENSIPUG00000016616)	gabra1 (ENSIPUG00000016648)	GABRA6 (ENSIPUG00000016689)	GABRB2 (ENSIPUG00000016801)	sh3pxd2b (ENSIPUG00000016846)	stk10 (ENSIPUG00000016982)	ENSIPUG00000017052	ZER1 (ENSIPUG00000017121)	TBC1D13 (ENSIPUG00000017179)	ralgds (ENSIPUG00000017222)	plgrkt (ENSIPUG00000017297)	rln1 (ENSIPUG00000017354) ##22	jak2 (ENSIPUG00000017375)	stard4 (ENSIPUG00000017479)	DTWD2 (ENSIPUG00000017499)	ENSIPUG00000017534	ENSIPUG00000017597	aurka (ENSIPUG00000017618)	dnajc21 (ENSIPUG00000017629)	NEDD4L (ENSIPUG00000017643)	wdr55 (ENSIPUG00000017695)	chm (ENSIPUG00000017705)	ENSIPUG00000017766	dacha (ENSIPUG00000017771)	ENSIPUG00000017795	alg13 (ENSIPUG00000017821)	p4ha2 (ENSIPUG00000017927)
Cyprinoidei	ANCESTRAL SPECIES	253														ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000154396.a.a ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154396.a.a ##22
Golden-line barbel	MODERN SPECIES	1950													zer1 (ENSSGRG00000013113)	TBC1D13 (ENSSGRG00000013244)	RALGDS (ENSSGRG00000013264)	rln1 (ENSSGRG00000013266) ##22
Goldfish	MODERN SPECIES	1195																rln1 (ENSCARG00000056544) ##22	bxdc2 (ENSCARG00000055918)	gsdf (ENSCARG00000055889)	ENSCARG00000055867	klhl8 (ENSCARG00000055737)
Cyprininae	ANCESTRAL SPECIES	518											ENSGT00530000063187.A	ENSGT00940000158674	ENSGT00940000177481.a	ENSGT00940000153181.d	ENSGT00390000000375	ENSGT00940000154396.a.b ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00390000014467.b	ENSGT00390000013620	ENSGT00940000157870.a.a.g	ENSGT00400000024763.d.a.a	ENSGT00950000182974.a.b.d	ENSGT01050000244842.b	ENSGT01100000263568.b.b	ENSGT00940000157870.a.a.h	ENSGT00400000024763.c	ENSGT00950000182974.a.b.c.a	ENSGT00940000157583	ENSGT00900000143450
Goldfish	MODERN SPECIES	1563														RALGDS (ENSCARG00000034015)	plgrkt (ENSCARG00000033967)	rln1 (ENSCARG00000033942) ##22	jak2a (ENSCARG00000032168)	stard4 (ENSCARG00000032114)	ENSCARG00000032097	NUP54 (ENSCARG00000031424)	PPEF2 (ENSCARG00000031297)	gsdf (ENSCARG00000031291)	ENSCARG00000031188	ENSCARG00000031064	ENSCARG00000031047	ENSCARG00000031038	klhl8 (ENSCARG00000030674)
Cyprininae_a	ANCESTRAL SPECIES	428											ENSGT00530000063187.A.e	ENSGT00940000158674	ENSGT00940000177481.a	ENSGT00940000153181.d	ENSGT00390000000375	ENSGT00940000154396.a.b ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00390000014467.b	ENSGT00390000013620	ENSGT00940000157870.a.a.g	ENSGT00400000024763.d.a.a	ENSGT00950000182974.a.b.d	ENSGT01050000244842.b	ENSGT00940000166846	ENSGT00940000157870.a.a.h	ENSGT00400000024763.c	ENSGT00950000182974.a.b.c.a	ENSGT00940000157583	ENSGT00900000143450
Common carp reference	MODERN SPECIES	38	ENSCCRG00000049201	TMEM38B (ENSCCRG00000077001)	ZNF462 (ENSCCRG00000064466)	RAD23B (ENSCCRG00000046888)	ENSCCRG00000035607	klf4 (ENSCCRG00000046905)	ARSB (ENSCCRG00000066183)	LHFPL2 (ENSCCRG00000062784)	DMGDH (ENSCCRG00000058708)	bhmt (ENSCCRG00000065069)	JMY (ENSCCRG00000063565)	ENSCCRG00000018744	ENSCCRG00000055387	ENSCCRG00000025041	plgrkt (ENSCCRG00000082850)	rln1 (ENSCCRG00000025047) ##22	jak2a (ENSCCRG00000060024)	stard4 (ENSCCRG00000076701)	ENSCCRG00000069813	bxdc2 (ENSCCRG00000015805)	ENSCCRG00000025156	ENSCCRG00000043951	ENSCCRG00000058894	ENSCCRG00000059305	ENSCCRG00000062122	ENSCCRG00000047825	ENSCCRG00000080810	ENSCCRG00000074843	ENSCCRG00000073341	ENSCCRG00000047602
Golden-line barbel	MODERN SPECIES	2382															plgrkt (ENSSGRG00000008942)	rln1 (ENSSGRG00000008941) ##22	stard4 (ENSSGRG00000008899)	stard4 (ENSSGRG00000008897)	DTWD2 (ENSSGRG00000008894)
Zebrafish	MODERN SPECIES	13	ENSDARG00000113371	ENSDARG00000110653	ENSDARG00000102894	ENSDARG00000089844	NARS1 (ENSDARG00000061100)	txnl1 (ENSDARG00000011921)	oaz1b (ENSDARG00000104782)	ENSDARG00000100549	ENSDARG00000068589	nop14 (ENSDARG00000098859)	klf4 (ENSDARG00000079922)	rad23b (ENSDARG00000021550)	ZNF462 (ENSDARG00000112909)	lhfpl2a (ENSDARG00000009653)	plgrkt (ENSDARG00000100789)	rln1 (ENSDARG00000103762) ##22	jak2a (ENSDARG00000104808)	stard4 (ENSDARG00000102477)	ENSDARG00000101873	bxdc2 (ENSDARG00000098935)	nup54 (ENSDARG00000103296)	ENSDARG00000111699	gsdf (ENSDARG00000075301)	klhl8 (ENSDARG00000101270)	ENSDARG00000100353	zer1 (ENSDARG00000105123)	ARSB (ENSDARG00000108788)	DMGDH (ENSDARG00000025703)	bhmt (ENSDARG00000013430)	JMY (ENSDARG00000114796)
Clupeiformes	ANCESTRAL SPECIES	12	ENSGT00390000017459	ENSGT00940000166449	ENSGT00950000183175.B.b	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000157066.p	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000159243	ENSGT00390000006867	ENSGT00940000156354.p	ENSGT00510000046704.b.a.c	ENSGT00390000003122.a.a.a	ENSGT00940000158176	ENSGT00940000158270	ENSGT00990000203589.b.b	ENSGT00940000157310	ENSGT00940000157603	ENSGT00390000009710	ENSGT00940000159952.a.a	ENSGT00390000001362.a	ENSGT00950000182772.B.a.a
Denticle herring	MODERN SPECIES	13	ENSDCDG00000016141	ENSDCDG00000016145	klf4 (ENSDCDG00000016149)	rad23b (ENSDCDG00000016163)	ZNF462 (ENSDCDG00000016214)	TMEM38B (ENSDCDG00000016231)	PRAG1 (ENSDCDG00000016238)	oaz1b (ENSDCDG00000016243)	UHRF2 (ENSDCDG00000016272)	KIAA2026 (ENSDCDG00000016419)	MLANA (ENSDCDG00000016424)	ERMP1 (ENSDCDG00000016428)	RIC1 (ENSDCDG00000016468)	ENSDCDG00000017819	plgrkt (ENSDCDG00000017824)	rln1 (ENSDCDG00000017828) ##22	jak2a (ENSDCDG00000017853)	stard4 (ENSDCDG00000018062)	DTWD2 (ENSDCDG00000018065)	HOMER1 (ENSDCDG00000018077)	JMY (ENSDCDG00000018277)	bhmt (ENSDCDG00000018312)	DMGDH (ENSDCDG00000018398)	ARSB (ENSDCDG00000020316)	lhfpl2a (ENSDCDG00000020317)	scamp1 (ENSDCDG00000020319)	AP3B1 (ENSDCDG00000020440)	tbca (ENSDCDG00000027202)	otpa (ENSDCDG00000027203)	wdr41 (ENSDCDG00000027205)	PDE8B (ENSDCDG00000027214)
Atlantic herring	MODERN SPECIES	3	SHROOM3 (ENSCHAG00000014395)	ENSCHAG00000014356	ccni (ENSCHAG00000014086)	ccng2 (ENSCHAG00000014054)	ENSCHAG00000014023	ENSCHAG00000014013	ENSCHAG00000013995	ENSCHAG00000013951	oaz1b (ENSCHAG00000013807)	ENSCHAG00000013789	UHRF2 (ENSCHAG00000013421)	KIAA2026 (ENSCHAG00000013322)	ENSCHAG00000013305	ERMP1 (ENSCHAG00000012730)	RIC1 (ENSCHAG00000011451)	rln1 (ENSCHAG00000011415) ##22	jak2a (ENSCHAG00000008676)	DTWD2 (ENSCHAG00000008583)	HOMER1 (ENSCHAG00000008500)	JMY (ENSCHAG00000008365)	bhmt (ENSCHAG00000008253)	tbca (ENSCHAG00000008227)	scamp1 (ENSCHAG00000008150)	ARSB (ENSCHAG00000007970)	ARSB (ENSCHAG00000007889)	ENSCHAG00000007860	wdr41 (ENSCHAG00000007850)	aggf1 (ENSCHAG00000007708)	s100z (ENSCHAG00000007692)	ch25hl2 (ENSCHAG00000007670)	f2rl1.2 (ENSCHAG00000007661)
Euteleosteomorpha	ANCESTRAL SPECIES	27	ENSGT00940000166449	ENSGT00950000183175.B.b	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000157066.p	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00390000006843	ENSGT00950000186109	ENSGT00940000161928	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158646	ENSGT00390000009349	ENSGT00940000159387.f	ENSGT00530000063085.B	ENSGT00940000166736	ENSGT00940000157589
Acanthomorphata	ANCESTRAL SPECIES	33	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	4322																ENSOSIG00000002700 ##22
Chinese medaka	MODERN SPECIES	199	rai14 (ENSOSIG00000017616)	fgf10a (ENSOSIG00000000082)	nnt (ENSOSIG00000000343)	ENSOSIG00000008419	ENSOSIG00000008423	atp5mea (ENSOSIG00000008424)	PDE6B (ENSOSIG00000008485)	rbp4l (ENSOSIG00000017385)	ndufa8 (ENSOSIG00000017387)	morn5 (ENSOSIG00000017392)	lhx6a (ENSOSIG00000017399)	rbm18 (ENSOSIG00000017402)	mrrf (ENSOSIG00000017408)	ENSOSIG00000017413	plgrkt (ENSOSIG00000017418)	ENSOSIG00000017421 ##22	jak2a (ENSOSIG00000017472)	ENSOSIG00000018643	ENSOSIG00000018649	RABGAP1 (ENSOSIG00000018721)	GPR21 (ENSOSIG00000019269)	STRBP (ENSOSIG00000019288)	SH2D3C (ENSOSIG00000019528)	CERCAM (ENSOSIG00000019777)	sardh (ENSOSIG00000019797)	dbh (ENSOSIG00000019814)	FAM163B (ENSOSIG00000019816)	swi5 (ENSOSIG00000019818)	ENSOSIG00000019819	slc27a4 (ENSOSIG00000019880)
Japanese Medaka HdrR	MODERN SPECIES	3	ENSORLG00000025096	atp5mea (ENSORLG00000026970)	ENSORLG00000009868	rbp4l (ENSORLG00000009897)	si:ch211-243g18.2 (ENSORLG00000009927)	ndufa8 (ENSORLG00000009940)	morn5 (ENSORLG00000009943)	ENSORLG00000029716	ENSORLG00000030169	lhx6a (ENSORLG00000009953)	rbm18 (ENSORLG00000009962)	mrrf (ENSORLG00000009966)	ENSORLG00000025440	plgrkt (ENSORLG00000022984)	jak2a (ENSORLG00000010002)	rln1 (ENSORLG00000023074) ##22	ENSORLG00000024849	ENSORLG00000019255	ENSORLG00000010018	RABGAP1 (ENSORLG00000010095)	GPR21 (ENSORLG00000010105)	STRBP (ENSORLG00000010162)	ENSORLG00000029576	SH2D3C (ENSORLG00000010207)	urm1 (ENSORLG00000024432)	ENSORLG00000028712	CERCAM (ENSORLG00000024859)	sardh (ENSORLG00000010220)	dbh (ENSORLG00000010252)	FAM163B (ENSORLG00000029662)	swi5 (ENSORLG00000025400)
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640.b	ENSGT00940000154396.a ##22	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000175176
Javanese ricefish	MODERN SPECIES	3	fgf10a (ENSOJAG00000003571)	nnt (ENSOJAG00000002554)	ENSOJAG00000002207	ENSOJAG00000002185	atp5mea (ENSOJAG00000002176)	PDE6B (ENSOJAG00000001880)	rbp4l (ENSOJAG00000001788)	si:ch211-243g18.2 (ENSOJAG00000001774)	ndufa8 (ENSOJAG00000001750)	morn5 (ENSOJAG00000001713)	lhx6a (ENSOJAG00000001671)	rbm18 (ENSOJAG00000001653)	mrrf (ENSOJAG00000023109)	ENSOJAG00000023102	plgrkt (ENSOJAG00000023098)	ENSOJAG00000023092 ##22	ENSOJAG00000023089	jak2a (ENSOJAG00000022479)	RC3H2 (ENSOJAG00000022355)	GPR21 (ENSOJAG00000022340)	RABGAP1 (ENSOJAG00000022105)	STRBP (ENSOJAG00000022044)	SH2D3C (ENSOJAG00000021935)	urm1 (ENSOJAG00000021885)	CERCAM (ENSOJAG00000021765)	sardh (ENSOJAG00000021315)	dbh (ENSOJAG00000021194)	FAM163B (ENSOJAG00000021183)	swi5 (ENSOJAG00000021180)	slc27a4 (ENSOJAG00000020602)	ptgdsa (ENSOJAG00000020518)
Indian medaka	MODERN SPECIES	30	nnt (ENSOMEG00000001608)	ENSOMEG00000001597	ENSOMEG00000001584	atp5mea (ENSOMEG00000001536)	PDE6B (ENSOMEG00000001559)	rbp4l (ENSOMEG00000001529)	si:ch211-243g18.2 (ENSOMEG00000001522)	ndufa8 (ENSOMEG00000001509)	morn5 (ENSOMEG00000001503)	lhx6a (ENSOMEG00000001499)	rbm18 (ENSOMEG00000001492)	mrrf (ENSOMEG00000001486)	ENSOMEG00000001480	plgrkt (ENSOMEG00000001473)	jak2a (ENSOMEG00000023623)	rln1 (ENSOMEG00000023578) ##22	ENSOMEG00000023570	RC3H2 (ENSOMEG00000023540)	RABGAP1 (ENSOMEG00000023491)	STRBP (ENSOMEG00000023400)	GPR21 (ENSOMEG00000023327)	SH2D3C (ENSOMEG00000023311)	urm1 (ENSOMEG00000023257)	CERCAM (ENSOMEG00000023247)	sardh (ENSOMEG00000023214)	dbh (ENSOMEG00000023184)	FAM163B (ENSOMEG00000023158)	swi5 (ENSOMEG00000023144)	slc27a4 (ENSOMEG00000023133)	ptgdsa (ENSOMEG00000023098)	ambp (ENSOMEG00000000624)
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Poecilia	ANCESTRAL SPECIES	12	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Guppy	MODERN SPECIES	442	nnt (ENSPREG00000009508)	ENSPREG00000009450	ENSPREG00000009378	atp5mea (ENSPREG00000009362)	PDE6B (ENSPREG00000009300)	rbp4l (ENSPREG00000009283)	si:ch211-243g18.2 (ENSPREG00000009265)	ndufa8 (ENSPREG00000009243)	morn5 (ENSPREG00000009221)	lhx6a (ENSPREG00000009198)	rbm18 (ENSPREG00000009157)	mrrf (ENSPREG00000009134)	ENSPREG00000009120	ENSPREG00000009109	plgrkt (ENSPREG00000009087)	rln1 (ENSPREG00000009095) ##22	jak2a (ENSPREG00000009040)	ENSPREG00000009012	RC3H2 (ENSPREG00000008979)	ENSPREG00000008947	GPR21 (ENSPREG00000008933)	RABGAP1 (ENSPREG00000008819)	STRBP (ENSPREG00000008696)	SH2D3C (ENSPREG00000008644)	urm1 (ENSPREG00000008611)	CERCAM (ENSPREG00000008544)	sardh (ENSPREG00000008464)	dbh (ENSPREG00000008394)	ENSPREG00000008361	FAM163B (ENSPREG00000008343)	swi5 (ENSPREG00000008320)
NAME_6	ANCESTRAL SPECIES	12	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216.g	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Amazon molly	MODERN SPECIES	258	rai14 (ENSPFOG00000019717)	fgf10a (ENSPFOG00000019716)	nnt (ENSPFOG00000019715)	ENSPFOG00000019714	ENSPFOG00000019713	PDE6B (ENSPFOG00000019711)	rbp4l (ENSPFOG00000019710)	si:ch211-243g18.2 (ENSPFOG00000021672)	ndufa8 (ENSPFOG00000019709)	morn5 (ENSPFOG00000019708)	lhx6a (ENSPFOG00000019707)	rbm18 (ENSPFOG00000019706)	mrrf (ENSPFOG00000019705)	ENSPFOG00000019704	plgrkt (ENSPFOG00000019703)	ENSPFOG00000019702 ##22	jak2a (ENSPFOG00000019701)	ENSPFOG00000019700	ENSPFOG00000019699	GPR21 (ENSPFOG00000019698)	RABGAP1 (ENSPFOG00000019697)	STRBP (ENSPFOG00000019696)	SH2D3C (ENSPFOG00000019695)	urm1 (ENSPFOG00000019694)	CERCAM (ENSPFOG00000019693)	sardh (ENSPFOG00000019692)	dbh (ENSPFOG00000019691)	FAM163B (ENSPFOG00000019690)	swi5 (ENSPFOG00000019689)	slc27a4 (ENSPFOG00000019688)	ptgdsa (ENSPFOG00000019687)
Platyfish	MODERN SPECIES	22	fgf10a (ENSXMAG00000023995)	nnt (ENSXMAG00000003631)	ENSXMAG00000024281	ENSXMAG00000003627	atp5mea (ENSXMAG00000003626)	PDE6B (ENSXMAG00000003582)	rbp4l (ENSXMAG00000003574)	si:ch211-243g18.2 (ENSXMAG00000003560)	ndufa8 (ENSXMAG00000003556)	morn5 (ENSXMAG00000029911)	lhx6a (ENSXMAG00000003545)	rbm18 (ENSXMAG00000003538)	mrrf (ENSXMAG00000023463)	ENSXMAG00000003530	plgrkt (ENSXMAG00000003524)	ENSXMAG00000025293 ##22	jak2a (ENSXMAG00000003465)	ENSXMAG00000003457	ENSXMAG00000024102	PHF24 (ENSXMAG00000026879)	ENSXMAG00000019949	ENSXMAG00000026567	ENSXMAG00000021536	ENSXMAG00000006088	lpar1 (ENSXMAG00000006126)	MUSK (ENSXMAG00000004125)	ENSXMAG00000027233	si:busm1-57f23.1 (ENSXMAG00000024627)	rassf6 (ENSXMAG00000004159)	si:busm1-57f23.1 (ENSXMAG00000024574)	ENSXMAG00000004122
NAME_4	ANCESTRAL SPECIES		ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Sheepshead minnow	MODERN SPECIES	339						rbp4l (ENSCVAG00000012551)	si:ch211-243g18.2 (ENSCVAG00000012536)	ndufa8 (ENSCVAG00000012512)	morn5 (ENSCVAG00000012492)	lhx6a (ENSCVAG00000012474)	rbm18 (ENSCVAG00000012436)	mrrf (ENSCVAG00000012428)	ENSCVAG00000012417	ENSCVAG00000012397	plgrkt (ENSCVAG00000012390)	ENSCVAG00000012225 ##22	jak2a (ENSCVAG00000012367)	ENSCVAG00000012217	ENSCVAG00000012202	RABGAP1 (ENSCVAG00000012167)	GPR21 (ENSCVAG00000012010)	STRBP (ENSCVAG00000011985)	SH2D3C (ENSCVAG00000011887)	urm1 (ENSCVAG00000011864)	CERCAM (ENSCVAG00000011857)	sardh (ENSCVAG00000011808)	dbh (ENSCVAG00000011701)	FAM163B (ENSCVAG00000011664)	swi5 (ENSCVAG00000011656)	slc27a4 (ENSCVAG00000011645)	ptgdsa (ENSCVAG00000011584)
Mummichog	MODERN SPECIES	2283									ndufa8 (ENSFHEG00000012551)	morn5 (ENSFHEG00000012528)	lhx6a (ENSFHEG00000012509)	rbm18 (ENSFHEG00000012457)	mrrf (ENSFHEG00000012439)	ENSFHEG00000012400	plgrkt (ENSFHEG00000012395)	ENSFHEG00000012376 ##22	jak2a (ENSFHEG00000012363)	ENSFHEG00000000274	ENSFHEG00000012272	RABGAP1 (ENSFHEG00000012247)	GPR21 (ENSFHEG00000012059)	STRBP (ENSFHEG00000012035)	SH2D3C (ENSFHEG00000011891)	ENSFHEG00000011865	ENSFHEG00000011823	sardh (ENSFHEG00000011729)	dbh (ENSFHEG00000011605)	FAM163B (ENSFHEG00000011498)	ENSFHEG00000011488	slc27a4 (ENSFHEG00000011478)	ptgdsa (ENSFHEG00000011405)
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Mangrove rivulus	MODERN SPECIES	16	nnt (ENSKMAG00000010311)	ENSKMAG00000010388	ENSKMAG00000010420	ENSKMAG00000010437	ENSKMAG00000010444	PDE6B (ENSKMAG00000010467)	rbp4l (ENSKMAG00000010541)	si:ch211-243g18.2 (ENSKMAG00000010576)	ndufa8 (ENSKMAG00000010616)	morn5 (ENSKMAG00000010642)	lhx6a (ENSKMAG00000010657)	rbm18 (ENSKMAG00000010679)	mrrf (ENSKMAG00000010695)	ENSKMAG00000010718	plgrkt (ENSKMAG00000010745)	ENSKMAG00000010772 ##22	jak2a (ENSKMAG00000010807)	ENSKMAG00000010912	ENSKMAG00000010936	RABGAP1 (ENSKMAG00000011024)	GPR21 (ENSKMAG00000011148)	STRBP (ENSKMAG00000011192)	SH2D3C (ENSKMAG00000011360)	urm1 (ENSKMAG00000011433)	CERCAM (ENSKMAG00000011475)	sardh (ENSKMAG00000011529)	ENSKMAG00000011605	dbh (ENSKMAG00000011625)	FAM163B (ENSKMAG00000011648)	swi5 (ENSKMAG00000011669)	slc27a4 (ENSKMAG00000011698)
Turquoise killifish	MODERN SPECIES	1611	CCDC80L2 (ENSNFUG00015010207)	ENSNFUG00015010189	atp5mea (ENSNFUG00015010172)	PDE6B (ENSNFUG00015009126)	Nfu_g_1_006592 (ENSNFUG00015025196)	si:ch211-243g18.2 (ENSNFUG00015025193)	NDUFA8 (ENSNFUG00015025189)	morn5 (ENSNFUG00015025188)	LHX6 (ENSNFUG00015025187)	rbm18 (ENSNFUG00015025185)	mrrf (ENSNFUG00015025184)	ENSNFUG00015025183	ENSNFUG00015025182	ENSNFUG00015025181	ENSNFUG00015025180	RLN1 (ENSNFUG00015025178) ##22	jak2a (ENSNFUG00015025014)	ENSNFUG00015024936	RC3H2 (ENSNFUG00015024934)	ENSNFUG00015024931	RABGAP1 (ENSNFUG00015024865)	STRBP (ENSNFUG00015024813)	ENSNFUG00015024794	SH2D3C (ENSNFUG00015024753)	urm1 (ENSNFUG00015024736)	CERCAM (ENSNFUG00015024667)	ENSNFUG00015024659	sardh (ENSNFUG00015024484)	ENSNFUG00015024440	dbh (ENSNFUG00015024435)	ENSNFUG00015024427
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000159066	ENSGT00940000156161.A	ENSGT00390000006975	ENSGT00610000087482	ENSGT00940000162544.c.a	ENSGT00940000164512.d	ENSGT00940000178065	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00940000161685.A.a	ENSGT00940000156208.i	ENSGT00950000182926.b.c	ENSGT01030000234627.a.b.a.b.b	ENSGT00940000158699.q.b	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000156161.A	ENSGT00390000006975	ENSGT00610000087482	ENSGT00940000162544.c.a	ENSGT00940000164512.d	ENSGT00940000178723	ENSGT00940000178065	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00940000161685.A.a	ENSGT00940000156208.i	ENSGT00950000182926.b.c	ENSGT01030000234627.a.b.a.b.b	ENSGT00940000158699.q.b	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00940000166736	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000156161.A	ENSGT00390000006975	ENSGT00610000087482	ENSGT00940000162544.c.a	ENSGT00940000164512.d	ENSGT00940000178723	ENSGT00940000178065	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00940000161685.A.a	ENSGT00940000156208.i	ENSGT00950000182926.b.c	ENSGT01030000234627.a.b.a.b.b	ENSGT00940000158699.q.b	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Burton s mouthbrooder	MODERN SPECIES	405	ENSHBUG00000023166	dusp4 (ENSHBUG00000023178)	ENSHBUG00000023389	cldn23.1 (ENSHBUG00000023433)	ENSHBUG00000023458	ENSHBUG00000023476	ENSHBUG00000023489	ndr1 (ENSHBUG00000000716)	eif4ebp1 (ENSHBUG00000023513)	ANK1 (ENSHBUG00000023656)	nefma (ENSHBUG00000023788)	neflb (ENSHBUG00000023803)	pgam2 (ENSHBUG00000023816)	ENSHBUG00000023822	MMP17 (ENSHBUG00000003869)	rln1 (ENSHBUG00000003877) ##22	jak2a (ENSHBUG00000003937)	ENSHBUG00000003956	RC3H2 (ENSHBUG00000003976)	GPR21 (ENSHBUG00000003995)	RABGAP1 (ENSHBUG00000004280)	STRBP (ENSHBUG00000004384)
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000168590	ENSGT00940000159066	ENSGT00940000156161.A	ENSGT00390000006975	ENSGT00940000162544.c.a	ENSGT00940000178723	ENSGT00940000181550	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00940000161685.A.a	ENSGT00940000156208.i	ENSGT00950000182926.b.c	ENSGT01030000234627.a.b.a.b.b	ENSGT00940000158699.q.b	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000168590	ENSGT00940000159066	ENSGT00940000156161.A	ENSGT00390000006975	ENSGT00940000162544.c.a	ENSGT00940000164512.d	ENSGT00940000178065	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00940000161685.A.a	ENSGT00940000156208.i	ENSGT00950000182926.b.c	ENSGT01030000234627.a.b.a.b.b	ENSGT00940000158699.q.b	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Eastern happy	MODERN SPECIES	19	cldn23.1 (ENSACLG00000023958)	ENSACLG00000023692	ENSACLG00000023660	ENSACLG00000023648	ndr1 (ENSACLG00000023643)	eif4ebp1 (ENSACLG00000023638)	ANK1 (ENSACLG00000023453)	nefma (ENSACLG00000023422)	neflb (ENSACLG00000023415)	pgam2 (ENSACLG00000023406)	ENSACLG00000023400	ENSACLG00000023355	ENSACLG00000023350	ENSACLG00000023342	MMP17 (ENSACLG00000023299)	rln1 (ENSACLG00000023223) ##22	jak2a (ENSACLG00000023172)	ENSACLG00000023156	RC3H2 (ENSACLG00000023136)	GPR21 (ENSACLG00000023129)	RABGAP1 (ENSACLG00000022769)	STRBP (ENSACLG00000022623)	ENSACLG00000022603	SH2D3C (ENSACLG00000022506)	urm1 (ENSACLG00000022484)	CERCAM (ENSACLG00000022449)	sardh (ENSACLG00000022216)	dbh (ENSACLG00000022136)	FAM163B (ENSACLG00000022122)	ENSACLG00000022118	slc27a4 (ENSACLG00000022029)
P. nyererei	MODERN SPECIES	327	cldn23.1 (ENSPNYG00000011364)	ENSPNYG00000011415	ENSPNYG00000011584	ENSPNYG00000011596	ENSPNYG00000011617	ENSPNYG00000011630	eif4ebp1 (ENSPNYG00000011640)	ANK1 (ENSPNYG00000011659)	ENSPNYG00000011726	nefma (ENSPNYG00000011781)	neflb (ENSPNYG00000011855)	pgam2 (ENSPNYG00000011876)	ENSPNYG00000011898	ENSPNYG00000011911	MMP17 (ENSPNYG00000011926)	rln1 (ENSPNYG00000011951) ##22	jak2a (ENSPNYG00000011975)	ENSPNYG00000012034	RC3H2 (ENSPNYG00000012063)	RABGAP1 (ENSPNYG00000012166)	GPR21 (ENSPNYG00000012294)	STRBP (ENSPNYG00000012317)	SH2D3C (ENSPNYG00000012381)	ENSPNYG00000012429	urm1 (ENSPNYG00000012446)	CERCAM (ENSPNYG00000012488)	sardh (ENSPNYG00000012545)	dbh (ENSPNYG00000012630)	FAM163B (ENSPNYG00000012705)	slc27a4 (ENSPNYG00000012733)	ptgdsa (ENSPNYG00000012793)
Lyretail cichlid	MODERN SPECIES	328	dusp4 (ENSNBRG00000009930)	ENSNBRG00000009869	ENSNBRG00000009850	cldn23.1 (ENSNBRG00000009840)	ENSNBRG00000009700	ENSNBRG00000009654	ENSNBRG00000009644	eif4ebp1 (ENSNBRG00000009633)	ANK1 (ENSNBRG00000009558)	nefma (ENSNBRG00000009534)	neflb (ENSNBRG00000009521)	pgam2 (ENSNBRG00000009501)	ENSNBRG00000009486	ENSNBRG00000009476	MMP17 (ENSNBRG00000009451)	rln1 (ENSNBRG00000009431) ##22	jak2a (ENSNBRG00000009344)	ENSNBRG00000009318	RC3H2 (ENSNBRG00000009276)	GPR21 (ENSNBRG00000009242)	RABGAP1 (ENSNBRG00000009158)	STRBP (ENSNBRG00000009092)	SH2D3C (ENSNBRG00000009032)	urm1 (ENSNBRG00000009012)	CERCAM (ENSNBRG00000008921)
Nile tilapia	MODERN SPECIES	19	dusp4 (ENSONIG00000041169)	ENSONIG00000004019	cldn23.1 (ENSONIG00000020635)	ENSONIG00000004014	ndr1 (ENSONIG00000004012)	eif4ebp1 (ENSONIG00000035373)	ANK1 (ENSONIG00000003990)	nefma (ENSONIG00000003986)	neflb (ENSONIG00000003981)	pgam2 (ENSONIG00000003979)	STX2 (ENSONIG00000043217)	ENSONIG00000032869	ENSONIG00000040512	ENSONIG00000032559	MMP17 (ENSONIG00000003963)	ENSONIG00000003962 ##22	jak2a (ENSONIG00000003957)	ENSONIG00000031422	RC3H2 (ENSONIG00000003945)	RABGAP1 (ENSONIG00000003929)	STRBP (ENSONIG00000003920)	SH2D3C (ENSONIG00000003912)	urm1 (ENSONIG00000003910)	CERCAM (ENSONIG00000003905)	sardh (ENSONIG00000003900)	dbh (ENSONIG00000003897)	FAM163B (ENSONIG00000003895)	swi5 (ENSONIG00000039901)	slc27a4 (ENSONIG00000003886)	ptgdsa (ENSONIG00000039127)	ENSONIG00000031160
Midas cichlid	MODERN SPECIES	1039		nnt (ENSACIG00000004780)	ENSACIG00000004826	ENSACIG00000004833	atp5mea (ENSACIG00000004870)	PDE6B (ENSACIG00000004888)	rbp4l (ENSACIG00000004936)	si:ch211-243g18.2 (ENSACIG00000004945)	ndufa8 (ENSACIG00000004963)	morn5 (ENSACIG00000004971)	lhx6a (ENSACIG00000004983)	rbm18 (ENSACIG00000005001)	mrrf (ENSACIG00000005017)	ENSACIG00000005077	plgrkt (ENSACIG00000005101)	ENSACIG00000005119 ##22	jak2a (ENSACIG00000005134)	ENSACIG00000005197	RC3H2 (ENSACIG00000005206)	RABGAP1 (ENSACIG00000005233)	GPR21 (ENSACIG00000005282)	STRBP (ENSACIG00000005296)	SH2D3C (ENSACIG00000005325)	urm1 (ENSACIG00000005345)	CERCAM (ENSACIG00000005353)	sardh (ENSACIG00000005385)	dbh (ENSACIG00000005429)	FAM163B (ENSACIG00000005452)	swi5 (ENSACIG00000005462)	slc27a4 (ENSACIG00000005476)	ptgdsa (ENSACIG00000005512)
Pomacentridae	ANCESTRAL SPECIES	12	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Bicolor damselfish	MODERN SPECIES	890						si:ch211-243g18.2 (ENSSPAG00000005484)	ndufa8 (ENSSPAG00000005474)	morn5 (ENSSPAG00000005455)	ENSSPAG00000005442	lhx6a (ENSSPAG00000005428)	lhx6a (ENSSPAG00000005407)	rbm18 (ENSSPAG00000005394)	mrrf (ENSSPAG00000005380)	ENSSPAG00000005367	plgrkt (ENSSPAG00000005355)	ENSSPAG00000005352 ##22	jak2a (ENSSPAG00000005276)	ENSSPAG00000005254	ENSSPAG00000005233	GPR21 (ENSSPAG00000005222)	RABGAP1 (ENSSPAG00000005088)
Pomacentridae_A	ANCESTRAL SPECIES	10	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Amphiprion	ANCESTRAL SPECIES	5	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Clown anemonefish	MODERN SPECIES	252								ndufa8 (ENSAOCG00000006706)	morn5 (ENSAOCG00000006721)	lhx6a (ENSAOCG00000006746)	rbm18 (ENSAOCG00000006762)	ENSAOCG00000006780	mrrf (ENSAOCG00000006807)	ENSAOCG00000006850	plgrkt (ENSAOCG00000006874)	rln1 (ENSAOCG00000006883) ##22	jak2a (ENSAOCG00000006970)
Orange clownfish	MODERN SPECIES	7	ENSAPEG00000008255	ENSAPEG00000008241	atp5mea (ENSAPEG00000008221)	PDE6B (ENSAPEG00000008147)	rbp4l (ENSAPEG00000008138)	si:ch211-243g18.2 (ENSAPEG00000008108)	ENSAPEG00000008094	ndufa8 (ENSAPEG00000008066)	morn5 (ENSAPEG00000008034)	lhx6a (ENSAPEG00000007998)	rbm18 (ENSAPEG00000007972)	ENSAPEG00000007948	mrrf (ENSAPEG00000007934)	ENSAPEG00000007916	plgrkt (ENSAPEG00000007905)	ENSAPEG00000007896 ##22	jak2a (ENSAPEG00000007819)	ENSAPEG00000007788	ENSAPEG00000007757	GPR21 (ENSAPEG00000007738)	RABGAP1 (ENSAPEG00000007575)	STRBP (ENSAPEG00000007513)	SH2D3C (ENSAPEG00000007467)	urm1 (ENSAPEG00000007448)	CERCAM (ENSAPEG00000007386)	sardh (ENSAPEG00000007311)	dbh (ENSAPEG00000007258)	FAM163B (ENSAPEG00000007248)	swi5 (ENSAPEG00000007215)	slc27a4 (ENSAPEG00000007145)	ptgdsa (ENSAPEG00000007125)
Spiny chromis	MODERN SPECIES	639										lhx6a (ENSAPOG00000002014)	rbm18 (ENSAPOG00000001987)	mrrf (ENSAPOG00000001958)	ENSAPOG00000001948	ENSAPOG00000001941	plgrkt (ENSAPOG00000001924)	rln1 (ENSAPOG00000001904) ##22	jak2a (ENSAPOG00000001890)	septin2 (ENSAPOG00000001837)	SOX14 (ENSAPOG00000001809)	CLDN18 (ENSAPOG00000001792)	selenof (ENSAPOG00000001778)	APCDD1L (ENSAPOG00000001758)	SRC (ENSAPOG00000001747)	manbal (ENSAPOG00000001717)	ENSAPOG00000001709	cyp24a1 (ENSAPOG00000001690)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00940000177220	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Climbing perch	MODERN SPECIES	13	nnt (ENSATEG00000018771)	ENSATEG00000018815	ENSATEG00000018842	atp5mea (ENSATEG00000018887)	ENSATEG00000018934	rbp4l (ENSATEG00000019002)	si:ch211-243g18.2 (ENSATEG00000019087)	ndufa8 (ENSATEG00000019115)	morn5 (ENSATEG00000019121)	lhx6a (ENSATEG00000019137)	rbm18 (ENSATEG00000019164)	mrrf (ENSATEG00000019203)	ENSATEG00000019235	ENSATEG00000019264	plgrkt (ENSATEG00000029320)	ENSATEG00000019304 ##22	jak2a (ENSATEG00000019327)	ENSATEG00000019384	ENSATEG00000019414	RABGAP1 (ENSATEG00000019451)	ENSATEG00000019543	STRBP (ENSATEG00000019558)	ENSATEG00000019597	urm1 (ENSATEG00000019659)	ENSATEG00000019680	sardh (ENSATEG00000019701)	dbh (ENSATEG00000019782)	FAM163B (ENSATEG00000028280)	swi5 (ENSATEG00000019828)	slc27a4 (ENSATEG00000019849)	ptgdsa (ENSATEG00000019895)
Zig-zag eel	MODERN SPECIES	3	fgf10a (ENSMAMG00000009611)	nnt (ENSMAMG00000009580)	ENSMAMG00000009522	atp5mea (ENSMAMG00000009506)	ENSMAMG00000009435	rbp4l (ENSMAMG00000009365)	si:ch211-243g18.2 (ENSMAMG00000009330)	ndufa8 (ENSMAMG00000009309)	morn5 (ENSMAMG00000009286)	lhx6a (ENSMAMG00000009266)	rbm18 (ENSMAMG00000009239)	ENSMAMG00000009221	mrrf (ENSMAMG00000024391)	ENSMAMG00000028096	plgrkt (ENSMAMG00000009197)	ENSMAMG00000009187 ##22	jak2a (ENSMAMG00000009157)	ENSMAMG00000009138	ENSMAMG00000009119	GPR21 (ENSMAMG00000009103)	ENSMAMG00000009032	ENSMAMG00000008774	ENSMAMG00000008733	URM1 (ENSMAMG00000025662)	ENSMAMG00000008684	sardh (ENSMAMG00000008605)	dbh (ENSMAMG00000008553)	FAM163B (ENSMAMG00000008536)	swi5 (ENSMAMG00000024800)	slc27a4 (ENSMAMG00000008495)	ptgdsa (ENSMAMG00000025422)
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Seriola	ANCESTRAL SPECIES	19	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Yellowtail amberjack	MODERN SPECIES	2438	fgf10a (ENSSLDG00000016717)	nnt (ENSSLDG00000016646)	ENSSLDG00000016616	ENSSLDG00000016582	atp5mea (ENSSLDG00000016564)	PDE6B (ENSSLDG00000016467)	rbp4l (ENSSLDG00000016422)	si:ch211-243g18.2 (ENSSLDG00000016390)	ndufa8 (ENSSLDG00000016378)	morn5 (ENSSLDG00000016365)	lhx6a (ENSSLDG00000016353)	rbm18 (ENSSLDG00000016329)	mrrf (ENSSLDG00000016309)	ENSSLDG00000016271	plgrkt (ENSSLDG00000016244)	ENSSLDG00000016238 ##22	jak2a (ENSSLDG00000016144)	ENSSLDG00000016126	RC3H2 (ENSSLDG00000016070)	GPR21 (ENSSLDG00000016048)	RABGAP1 (ENSSLDG00000015951)	STRBP (ENSSLDG00000015865)
Greater amberjack	MODERN SPECIES	138	nnt (ENSSDUG00000016421)	ENSSDUG00000016404	ENSSDUG00000016395	ENSSDUG00000016375	ENSSDUG00000016359	PDE6B (ENSSDUG00000016292)	rbp4l (ENSSDUG00000016277)	si:ch211-243g18.2 (ENSSDUG00000016265)	ndufa8 (ENSSDUG00000016251)	morn5 (ENSSDUG00000016237)	lhx6a (ENSSDUG00000016217)	rbm18 (ENSSDUG00000016203)	mrrf (ENSSDUG00000016181)	ENSSDUG00000016168	plgrkt (ENSSDUG00000016153)	ENSSDUG00000016134 ##22	jak2a (ENSSDUG00000016063)	ENSSDUG00000016049	ENSSDUG00000016022	GPR21 (ENSSDUG00000016014)	RABGAP1 (ENSSDUG00000015893)
Barramundi perch	MODERN SPECIES	121	fgf10a (ENSLCAG00010002578)	nnt (ENSLCAG00010002654)	ENSLCAG00010003185	ENSLCAG00010003193	atp5mea (ENSLCAG00010003200)	PDE6B (ENSLCAG00010003229)	rbp4l (ENSLCAG00010003311)	si:ch211-243g18.2 (ENSLCAG00010003316)	ndufa8 (ENSLCAG00010003322)	morn5 (ENSLCAG00010003327)	lhx6a (ENSLCAG00010003333)	rbm18 (ENSLCAG00010003338)	mrrf (ENSLCAG00010003341)	ENSLCAG00010003343	plgrkt (ENSLCAG00010003345)	rln1 (ENSLCAG00010003346) ##22	jak2a (ENSLCAG00010003367)	ENSLCAG00010003423	ENSLCAG00010003434	RABGAP1 (ENSLCAG00010003497)	STRBP (ENSLCAG00010003638)	SH2D3C (ENSLCAG00010003745)	urm1 (ENSLCAG00010003790)	CERCAM (ENSLCAG00010003804)	sardh (ENSLCAG00010003849)	dbh (ENSLCAG00010003909)	FAM163B (ENSLCAG00010003913)	ENSLCAG00010003917	slc27a4 (ENSLCAG00010003999)	ptgdsa (ENSLCAG00010004377)	ENSLCAG00010004381
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00390000004624.a.a	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Turbot	MODERN SPECIES	7	nnt (ENSSMAG00000020244)	ENSSMAG00000029611	ENSSMAG00000020216	atp5mea (ENSSMAG00000020210)	ENSSMAG00000020179	rbp4l (ENSSMAG00000020171)	si:ch211-243g18.2 (ENSSMAG00000020163)	ndufa8 (ENSSMAG00000035909)	morn5 (ENSSMAG00000020156)	lhx6a (ENSSMAG00000020142)	rbm18 (ENSSMAG00000020138)	mrrf (ENSSMAG00000020126)	ENSSMAG00000020134	ENSSMAG00000020121	plgrkt (ENSSMAG00000020103)	ENSSMAG00000020098 ##22	jak2a (ENSSMAG00000020074)	ENSSMAG00000020069	ENSSMAG00000020048	ENSSMAG00000019967	ENSSMAG00000019946	ENSSMAG00000019931	urm1 (ENSSMAG00000028849)	ENSSMAG00000019898	sardh (ENSSMAG00000019868)	dbh (ENSSMAG00000019862)	FAM163B (ENSSMAG00000029230)	ENSSMAG00000034312	slc27a4 (ENSSMAG00000019834)	ENSSMAG00000026708	ptgdsa (ENSSMAG00000019825)
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158646	ENSGT00390000009349
Tetraodon	MODERN SPECIES	19	fgf10a (ENSTNIG00000009130)	nnt (ENSTNIG00000009131)	ENSTNIG00000009132	ENSTNIG00000009133	atp5mea (ENSTNIG00000009134)	PDE6B (ENSTNIG00000009135)	rbp4l (ENSTNIG00000009136)	si:ch211-243g18.2 (ENSTNIG00000009137)	ndufa8 (ENSTNIG00000009138)	morn5 (ENSTNIG00000009139)	lhx6a (ENSTNIG00000009140)	rbm18 (ENSTNIG00000009141)	mrrf (ENSTNIG00000004946)	ENSTNIG00000004945	plgrkt (ENSTNIG00000004944)	rln1 (ENSTNIG00000000319) ##22	jak2a (ENSTNIG00000004943)	RC3H2 (ENSTNIG00000004942)	GPR21 (ENSTNIG00000004940)	RABGAP1 (ENSTNIG00000004941)	ENSTNIG00000004947	SH2D3C (ENSTNIG00000013203)	urm1 (ENSTNIG00000013204)	CERCAM (ENSTNIG00000013205)	sardh (ENSTNIG00000013206)	dbh (ENSTNIG00000013207)	FAM163B (ENSTNIG00000018887)	ambp (ENSTNIG00000013208)	ptgdsa (ENSTNIG00000013209)	slc27a4 (ENSTNIG00000013210)	nrarpa (ENSTNIG00000013211)
Fugu	MODERN SPECIES	18	ENSTRUG00000007954	rai14 (ENSTRUG00000007760)	fgf10a (ENSTRUG00000023059)	nnt (ENSTRUG00000007087)	ENSTRUG00000032838	ENSTRUG00000024843	atp5mea (ENSTRUG00000019731)	rbp4l (ENSTRUG00000006802)	si:ch211-243g18.2 (ENSTRUG00000005926)	ndufa8 (ENSTRUG00000000871)	morn5 (ENSTRUG00000027583)	lhx6a (ENSTRUG00000024435)	rbm18 (ENSTRUG00000005812)	mrrf (ENSTRUG00000005792)	plgrkt (ENSTRUG00000025063)	rln (ENSTRUG00000005640) ##22	ENSTRUG00000003364	RABGAP1 (ENSTRUG00000003120)	GPR21 (ENSTRUG00000026912)	ENSTRUG00000031096	STRBP (ENSTRUG00000003062)	SH2D3C (ENSTRUG00000008304)	urm1 (ENSTRUG00000008530)	CERCAM (ENSTRUG00000008540)	sardh (ENSTRUG00000008684)	dbh (ENSTRUG00000009103)	FAM163B (ENSTRUG00000009489)	ENSTRUG00000009496	ENSTRUG00000027747	ptgdsa (ENSTRUG00000009705)	slc27a4 (ENSTRUG00000009716)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Ballan wrasse	MODERN SPECIES	28	nnt (ENSLBEG00000023549)	ENSLBEG00000023603	ENSLBEG00000023639	atp5mea (ENSLBEG00000023682)	PDE6B (ENSLBEG00000023708)	rbp4l (ENSLBEG00000023763)	si:ch211-243g18.2 (ENSLBEG00000023778)	ndufa8 (ENSLBEG00000023815)	morn5 (ENSLBEG00000023834)	lhx6a (ENSLBEG00000023861)	rbm18 (ENSLBEG00000023896)	ENSLBEG00000023924	mrrf (ENSLBEG00000023948)	ENSLBEG00000023990	plgrkt (ENSLBEG00000024027)	ENSLBEG00000024041 ##22	jak2a (ENSLBEG00000024071)	ENSLBEG00000024130
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Perciformes	ANCESTRAL SPECIES	16	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Lumpfish	MODERN SPECIES	3	fgf10a (ENSCLMG00005006180)	nnt (ENSCLMG00005006198)	ENSCLMG00005008977	atp5mea (ENSCLMG00005008978)	PDE6B (ENSCLMG00005008981)	rbp4l (ENSCLMG00005008987)	si:ch211-243g18.2 (ENSCLMG00005008988)	ndufa8 (ENSCLMG00005008989)	morn5 (ENSCLMG00005008993)	lhx6a (ENSCLMG00005008997)	rbm18 (ENSCLMG00005008999)	mrrf (ENSCLMG00005009000)	ENSCLMG00005009001	ENSCLMG00005009002	plgrkt (ENSCLMG00005009003)	ENSCLMG00005009004 ##22	jak2a (ENSCLMG00005009023)	ENSCLMG00005012933	RC3H2 (ENSCLMG00005012939)	RABGAP1 (ENSCLMG00005013055)	GPR21 (ENSCLMG00005016098)	STRBP (ENSCLMG00005016104)	SH2D3C (ENSCLMG00005016195)	urm1 (ENSCLMG00005016219)	CERCAM (ENSCLMG00005016237)	sardh (ENSCLMG00005016931)	dbh (ENSCLMG00005017194)	FAM163B (ENSCLMG00005017196)	swi5 (ENSCLMG00005017198)	slc27a4 (ENSCLMG00005017212)	ptgdsa (ENSCLMG00005018616)
Stickleback	MODERN SPECIES	13	nnt (ENSGACG00000017293)	ENSGACG00000017301	ENSGACG00000017303	ENSGACG00000017305	PDE6B (ENSGACG00000017311)	rbp4l (ENSGACG00000017329)	si:ch211-243g18.2 (ENSGACG00000017340)	ndufa8 (ENSGACG00000017341)	morn5 (ENSGACG00000017344)	lhx6a (ENSGACG00000017345)	rbm18 (ENSGACG00000017348)	mrrf (ENSGACG00000017355)	ENSGACG00000017359	ENSGACG00000017360	plgrkt (ENSGACG00000017363)	ENSGACG00000017364 ##22	jak2a (ENSGACG00000017365)	ENSGACG00000017368	RC3H2 (ENSGACG00000017369)	RABGAP1 (ENSGACG00000017370)	GPR21 (ENSGACG00000017376)	STRBP (ENSGACG00000017377)	SH2D3C (ENSGACG00000017388)	urm1 (ENSGACG00000017389)	CERCAM (ENSGACG00000017392)	sardh (ENSGACG00000017396)	dbh (ENSGACG00000017404)	FAM163B (ENSGACG00000017407)	slc27a4 (ENSGACG00000017409)	ptgdsa (ENSGACG00000017420)	ambp (ENSGACG00000017422)
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00390000004624.a.a	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000163543.b	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Pike perch	MODERN SPECIES	48	nnt (ENSSLUG00000024186)	ENSSLUG00000024553	ENSSLUG00000024558	atp5mea (ENSSLUG00000024564)	PDE6B (ENSSLUG00000024571)	rbp4l (ENSSLUG00000024581)	si:ch211-243g18.2 (ENSSLUG00000024589)	ndufa8 (ENSSLUG00000024596)	morn5 (ENSSLUG00000024602)	lhx6a (ENSSLUG00000024604)	rbm18 (ENSSLUG00000024609)	mrrf (ENSSLUG00000024612)	ENSSLUG00000024617	ENSSLUG00000024620	plgrkt (ENSSLUG00000024623)	rln1 (ENSSLUG00000024626) ##22	jak2a (ENSSLUG00000024718)	ENSSLUG00000025012	RC3H2 (ENSSLUG00000025020)	RABGAP1 (ENSSLUG00000025044)	GPR21 (ENSSLUG00000025074)	STRBP (ENSSLUG00000025087)	SH2D3C (ENSSLUG00000025133)	urm1 (ENSSLUG00000025144)	CERCAM (ENSSLUG00000025146)	sardh (ENSSLUG00000001588)	dbh (ENSSLUG00000001746)	dbh (ENSSLUG00000001773)	FAM163B (ENSSLUG00000001786)	swi5 (ENSSLUG00000002876)	slc27a4 (ENSSLUG00000001998)
Channel bull blenny	MODERN SPECIES	3	fgf10a (ENSCGOG00000017689)	nnt (ENSCGOG00000016393)	ENSCGOG00000016362	ENSCGOG00000016356	PDE6B (ENSCGOG00000011901)	rbp4l (ENSCGOG00000011776)	si:ch211-243g18.2 (ENSCGOG00000011767)	ndufa8 (ENSCGOG00000011745)	morn5 (ENSCGOG00000011736)	lhx6a (ENSCGOG00000011731)	rbm18 (ENSCGOG00000011724)	ENSCGOG00000011722	mrrf (ENSCGOG00000011719)	ENSCGOG00000011711	plgrkt (ENSCGOG00000011704)	rln1 (ENSCGOG00000011700) ##22	jak2a (ENSCGOG00000009110)	ENSCGOG00000009040	RC3H2 (ENSCGOG00000008812)	GPR21 (ENSCGOG00000008798)	RABGAP1 (ENSCGOG00000006824)	STRBP (ENSCGOG00000006130)	SH2D3C (ENSCGOG00000005790)	urm1 (ENSCGOG00000005779)	CERCAM (ENSCGOG00000005166)	sardh (ENSCGOG00000004189)	dbh (ENSCGOG00000004086)	FAM163B (ENSCGOG00000004068)	swi5 (ENSCGOG00000023984)	slc27a4 (ENSCGOG00000023716)	ptgdsa (ENSCGOG00000023696)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000163543.b	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c	ENSGT00950000182969.A.a.b	ENSGT00390000008938	ENSGT00390000018089	ENSGT00940000156868.g	ENSGT00390000013765	ENSGT00390000005084	ENSGT00940000177220	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00940000157920.b	ENSGT00940000157685	ENSGT00940000157216	ENSGT00940000154687.B.q.a	ENSGT00940000154130.a.b.e	ENSGT00390000005101	ENSGT01030000234558.D.a	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387.f	ENSGT00390000009349	ENSGT00940000158646	ENSGT01100000263580	ENSGT00940000160109
European seabass	MODERN SPECIES	9	ENSDLAG00005019436	fgf10a (ENSDLAG00005033192)	nnt (ENSDLAG00005019517)	ENSDLAG00005020864	ENSDLAG00005027856	ENSDLAG00005020933	ENSDLAG00005033368	si:ch211-243g18.2 (ENSDLAG00005022473)	ndufa8 (ENSDLAG00005022483)	morn5 (ENSDLAG00005022499)	lhx6a (ENSDLAG00005022500)	rbm18 (ENSDLAG00005022505)	mrrf (ENSDLAG00005028988)	ENSDLAG00005022515	ENSDLAG00005035124	ENSDLAG00005033055 ##22	ENSDLAG00005022633	ENSDLAG00005023949	ENSDLAG00005023963	ENSDLAG00005024000	ENSDLAG00005024359	ENSDLAG00005024298	urm1 (ENSDLAG00005024484)	ENSDLAG00005024497	sardh (ENSDLAG00005024584)	dbh (ENSDLAG00005024648)	FAM163B (ENSDLAG00005024656)	ENSDLAG00005032513	slc27a4 (ENSDLAG00005024682)	ambp (ENSDLAG00005000501)	nrarpa (ENSDLAG00005000518)
Large yellow croaker	MODERN SPECIES	4	rai14 (ENSLCRG00005012880)	fgf10a (ENSLCRG00005012876)	nnt (ENSLCRG00005012777)	ENSLCRG00005012773	ENSLCRG00005012772	atp5mea (ENSLCRG00005012770)	PDE6B (ENSLCRG00005012298)	rbp4l (ENSLCRG00005012286)	si:ch211-243g18.2 (ENSLCRG00005012281)	ndufa8 (ENSLCRG00005012273)	lhx6a (ENSLCRG00005012268)	rbm18 (ENSLCRG00005012263)	morn5 (ENSLCRG00005012256)	ENSLCRG00005012255	plgrkt (ENSLCRG00005012253)	rln1 (ENSLCRG00005012250) ##22	jak2a (ENSLCRG00005012127)	ENSLCRG00005012113	ENSLCRG00005012111	RABGAP1 (ENSLCRG00005011428)	STRBP (ENSLCRG00005011009)	ENSLCRG00005009778	urm1 (ENSLCRG00005009748)	CERCAM (ENSLCRG00005009424)	sardh (ENSLCRG00005009323)	dbh (ENSLCRG00005009322)	FAM163B (ENSLCRG00005009321)	swi5 (ENSLCRG00005009320)	slc27a4 (ENSLCRG00005007425)	ptgdsa (ENSLCRG00005007384)	ENSLCRG00005007383
Gilthead seabream	MODERN SPECIES	3	nnt (ENSSAUG00010022969)	ENSSAUG00010022959	ENSSAUG00010022957	atp5mea (ENSSAUG00010022955)	PDE6B (ENSSAUG00010022428)	rbp4l (ENSSAUG00010022404)	si:ch211-243g18.2 (ENSSAUG00010022403)	NDUFA8 (ENSSAUG00010022401)	morn5 (ENSSAUG00010022399)	lhx6a (ENSSAUG00010022398)	rbm18 (ENSSAUG00010022397)	ENSSAUG00010022395	mrrf (ENSSAUG00010022394)	ENSSAUG00010022392	plgrkt (ENSSAUG00010022389)	rln1 (ENSSAUG00010022388) ##22	jak2a (ENSSAUG00010019520)	ENSSAUG00010019431	ENSSAUG00010019420	GPR21 (ENSSAUG00010019417)	RABGAP1 (ENSSAUG00010018892)	STRBP (ENSSAUG00010018478)	SH2D3C (ENSSAUG00010018460)	urm1 (ENSSAUG00010018459)	CERCAM (ENSSAUG00010018306)	sardh (ENSSAUG00010018267)	dbh (ENSSAUG00010018252)	FAM163B (ENSSAUG00010018249)	swi5 (ENSSAUG00010018246)	slc27a4 (ENSSAUG00010015229)	ptgdsa (ENSSAUG00010015164)
Pinecone sodierfish	MODERN SPECIES	3	skor2 (ENSMMDG00005011206)	ENSMMDG00005011213	ENSMMDG00005011271	ENSMMDG00005011274	ENSMMDG00005011276	ENSMMDG00005011286	ENSMMDG00005011450	dusp4 (ENSMMDG00005011454)	ENSMMDG00005011456	cntfr (ENSMMDG00005011460)	galt (ENSMMDG00005011526)	sigmar1 (ENSMMDG00005011537)	ugt2a5 (ENSMMDG00005011562)	ENSMMDG00005012839	plgrkt (ENSMMDG00005012841)	rln1 (ENSMMDG00005012844) ##22	jak2a (ENSMMDG00005012944)	ENSMMDG00005017684	ENSMMDG00005017686	RABGAP1 (ENSMMDG00005017704)	GPR21 (ENSMMDG00005018217)	STRBP (ENSMMDG00005018220)	SH2D3C (ENSMMDG00005018545)	urm1 (ENSMMDG00005019075)	CERCAM (ENSMMDG00005019084)	sardh (ENSMMDG00005019095)	dbh (ENSMMDG00005019338)	ENSMMDG00005019342	FAM163B (ENSMMDG00005019344)	swi5 (ENSMMDG00005019345)	slc27a4 (ENSMMDG00005019410)
Cod	MODERN SPECIES	17	nnt (ENSGMOG00000016424)	ENSGMOG00000015564	ENSGMOG00000028443	ENSGMOG00000036730	ENSGMOG00000025799	ENSGMOG00000024295	ENSGMOG00000027914	ENSGMOG00000016506	ENSGMOG00000036082	si:ch211-243g18.2 (ENSGMOG00000016548)	ndufa8 (ENSGMOG00000016559)	morn5 (ENSGMOG00000016571)	lhx6a (ENSGMOG00000016580)	mrrf (ENSGMOG00000016602)	plgrkt (ENSGMOG00000016622)	ENSGMOG00000000122 ##22	ENSGMOG00000037246	jak2a (ENSGMOG00000016634)	ENSGMOG00000016684	ENSGMOG00000016709	ENSGMOG00000016738	ENSGMOG00000004870	ENSGMOG00000006010	urm1 (ENSGMOG00000006245)	ENSGMOG00000006257	sardh (ENSGMOG00000006278)	dbh (ENSGMOG00000006317)	FAM163B (ENSGMOG00000035957)	swi5 (ENSGMOG00000023602)	slc27a4 (ENSGMOG00000001078)	ptgdsa (ENSGMOG00000006519)
Protacanthopterygii	ANCESTRAL SPECIES	36	ENSGT00940000166449	ENSGT00950000183175.B.b	ENSGT00940000156229	ENSGT00390000012078.b	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000157066.p	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839.s.a	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a ##22	ENSGT00940000155640.b	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00390000006843	ENSGT00940000161928	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158646	ENSGT00390000009349	ENSGT00940000159387.f	ENSGT00530000063085.B	ENSGT00940000157589	ENSGT01030000234558.D.a	ENSGT00390000005101
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1278															ENSGT00940000161373.y	ENSGT00940000154396.a.e ##22	ENSGT00940000155640.b.f
Salmoninae_a	ANCESTRAL SPECIES	57	ENSGT00940000166449.m.b	ENSGT00950000183175.B.b.h	ENSGT00940000156229.db	ENSGT00390000012078.b.kb	ENSGT00940000156411.od.a.b	ENSGT00390000018845.e.h	ENSGT00940000157066.p.d	ENSGT00940000166601.h	ENSGT00390000008296.b.b.b	ENSGT00390000011483.b	ENSGT00390000009531	ENSGT00530000063839.s.b	ENSGT00390000002955.d	ENSGT00940000161373.y	ENSGT00390000000375.k.b	ENSGT00940000154396.a.e ##22	ENSGT00940000155640.b.e.b	ENSGT00990000211348	ENSGT00940000155120.b	ENSGT00390000013443.d.d	ENSGT00390000006843	ENSGT00940000160109.d	ENSGT00940000158646.f	ENSGT00990000204868.b	ENSGT00940000159387.f.d	ENSGT00530000063085.B.c	ENSGT01030000234558.D.a.f	ENSGT00940000154130.a.b.e.f	ENSGT00940000154687.B.q.a.b	ENSGT00940000157216.j.b	ENSGT00940000163543.b.c
Oncorhynchus	ANCESTRAL SPECIES	47	ENSGT00940000166449.m.b	ENSGT00950000183175.B.b.h	ENSGT00940000156229.db	ENSGT00390000012078.b.kb	ENSGT00940000156411.od.a.b	ENSGT00390000018845.e.h	ENSGT00940000157066.p.d	ENSGT00940000166601.h	ENSGT00390000008296.b.b.b	ENSGT00390000011483.b	ENSGT00390000009531.e	ENSGT00530000063839.s.b	ENSGT00390000002955.d	ENSGT00940000161373.y	ENSGT01000000222080	ENSGT00940000154396.a.e ##22	ENSGT00940000155640.b.e.b	ENSGT00940000155120.b	ENSGT00390000013443.d.d	ENSGT00390000006843	ENSGT00940000160109.d	ENSGT00940000158646.f	ENSGT00990000204868.b	ENSGT00940000159387.f.d	ENSGT00530000063085.B.c	ENSGT01030000234558.D.a.f	ENSGT00940000154130.a.b.e.f	ENSGT00940000154687.B.q.a.b	ENSGT00940000157216.j.b	ENSGT00940000163543.b.c	ENSGT00940000157685.i.b
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000017077	TMEM38B (ENSOMYG00000017086)	ENSOMYG00000070406	ENSOMYG00000017092	ENSOMYG00000017101	ENSOMYG00000017118	KIAA2026 (ENSOMYG00000017162)	MLANA (ENSOMYG00000063750)	ENSOMYG00000017171	ERMP1 (ENSOMYG00000017179)	RIC1 (ENSOMYG00000013787)	ENSOMYG00000048285	PDCD1LG2 (ENSOMYG00000013859)	JAK2 (ENSOMYG00000014300)	ENSOMYG00000013875	ENSOMYG00000057482 ##22	ENSOMYG00000050530	ak3 (ENSOMYG00000018108)	cdc37l1 (ENSOMYG00000018112)	ENSOMYG00000018143	ambp (ENSOMYG00000018191)	slc27a4 (ENSOMYG00000018234)	ENSOMYG00000054612	ENSOMYG00000018247	ENSOMYG00000058972	ENSOMYG00000068284	dbh (ENSOMYG00000018264)	ENSOMYG00000018296	ENSOMYG00000066648	ENSOMYG00000018585	ENSOMYG00000060692
Oncorhynchus_a	ANCESTRAL SPECIES	48	ENSGT00940000158581.j	ENSGT00940000166449.m.b	ENSGT00950000183175.B.b.h	ENSGT00940000156229.db	ENSGT00390000012078.b.kb	ENSGT00940000156411.od.a.b	ENSGT00390000018845.e.h	ENSGT00940000157066.p.d	ENSGT00940000166601.h	ENSGT00390000008296.b.b.b	ENSGT00390000011483.b	ENSGT00390000009531.e	ENSGT00530000063839.s.b	ENSGT00390000002955.d	ENSGT00940000161373.y	ENSGT00940000154396.a.e ##22	ENSGT00940000155640.b.e.b	ENSGT00940000155120.b	ENSGT00390000013443.d.d	ENSGT00390000006843	ENSGT00940000160109.d	ENSGT00940000158646.f	ENSGT00990000204868.b	ENSGT00940000159387.f.d	ENSGT00530000063085.B.c	ENSGT01030000234558.D.a.f	ENSGT01040000241697.a	ENSGT00940000174776	ENSGT00940000154130.a.b.e.f	ENSGT00940000154687.B.q.a.b	ENSGT00940000157216.j.b
Coho salmon	MODERN SPECIES	26	ENSOKIG00005034023	SNCA (ENSOKIG00005034032)	KLF4 (ENSOKIG00005034074)	RAD23B (ENSOKIG00005034094)	ZNF462 (ENSOKIG00005034164)	ENSOKIG00005034183	TMEM38B (ENSOKIG00005034186)	PRAG1 (ENSOKIG00005034196)	ENSOKIG00005034204	ENSOKIG00005034248	KIAA2026 (ENSOKIG00005034610)	ENSOKIG00005034620	ERMP1 (ENSOKIG00005034658)	RIC1 (ENSOKIG00005035074)	ENSOKIG00005035275	ENSOKIG00005035306 ##22	jak2a (ENSOKIG00005035557)	ak3 (ENSOKIG00005040486)	ENSOKIG00005040498	cdc37l1 (ENSOKIG00005040529)	ENSOKIG00005040586	ENSOKIG00005040595	ambp (ENSOKIG00005040634)	slc27a4 (ENSOKIG00005040735)	FAM163B (ENSOKIG00005041033)	dbh (ENSOKIG00005041036)	CERCAM (ENSOKIG00005041060)	ENSOKIG00005041293	ENSOKIG00005041326	SH2D3C (ENSOKIG00005041361)	STRBP (ENSOKIG00005041432)
Chinook salmon	MODERN SPECIES	33	add1 (ENSOTSG00005009442)	ENSOTSG00005025083	ENSOTSG00005025106	klf4 (ENSOTSG00005025144)	rad23b (ENSOTSG00005025148)	ZNF462 (ENSOTSG00005025161)	TMEM38B (ENSOTSG00005025165)	ENSOTSG00005025166	oaz1b (ENSOTSG00005025167)	ENSOTSG00005025175	KIAA2026 (ENSOTSG00005027944)	ENSOTSG00005027946	ERMP1 (ENSOTSG00005027950)	RIC1 (ENSOTSG00005027953)	PDCD1LG2 (ENSOTSG00005027960)	ENSOTSG00005027962 ##22	ENSOTSG00005027963	jak2a (ENSOTSG00005027989)	ak3 (ENSOTSG00005030585)	cdc37l1 (ENSOTSG00005030589)	ENSOTSG00005030592	ambp (ENSOTSG00005030601)	ENSOTSG00005030630	slc27a4 (ENSOTSG00005030646)	ENSOTSG00005032745	FAM163B (ENSOTSG00005032747)	dbh (ENSOTSG00005032748)	CERCAM (ENSOTSG00005032749)	RABGAP1 (ENSOTSG00005032755)	ENSOTSG00005032865	ENSOTSG00005032867
Salmo	ANCESTRAL SPECIES	13	ENSGT00940000166449.m.b	ENSGT00950000183175.B.b.h	ENSGT00940000156229.db	ENSGT00390000012078.b.kb	ENSGT00940000156411.od.a.b	ENSGT00390000018845.e.h	ENSGT00940000157066.p.d	ENSGT00940000166601.h	ENSGT00390000008296.b.b.b	ENSGT00390000011483.b	ENSGT00990000210603	ENSGT00530000063839.s.b	ENSGT00390000002955.d	ENSGT00940000161373.y	ENSGT00390000000375.k.b	ENSGT00940000154396.a.e ##22	ENSGT00940000155640.b.e.b	ENSGT00990000211348	ENSGT00940000155120.b	ENSGT00390000013443.d.d	ENSGT00390000006843	ENSGT00940000160109.d	ENSGT00940000158646.f	ENSGT00990000204868.b	ENSGT00940000159387.f.d	ENSGT00530000063085.B.c	ENSGT01030000234558.D.a.f	ENSGT01040000241697.a	ENSGT00940000154130.a.b.e.f	ENSGT00940000154687.B.q.a.b	ENSGT00940000163543.b.c
River trout	MODERN SPECIES	6	ENSSTUG00000013996	SNCA (ENSSTUG00000013980)	klf4 (ENSSTUG00000013959)	rad23b (ENSSTUG00000013936)	ZNF462 (ENSSTUG00000013918)	TMEM38B (ENSSTUG00000013897)	ENSSTUG00000013890	oaz1b (ENSSTUG00000013875)	ENSSTUG00000013672	KIAA2026 (ENSSTUG00000013642)	ENSSTUG00000013634	ERMP1 (ENSSTUG00000012221)	RIC1 (ENSSTUG00000012066)	PDCD1LG2 (ENSSTUG00000012037)	ENSSTUG00000011996	rln1 (ENSSTUG00000011990) ##22	jak2a (ENSSTUG00000011222)	ENSSTUG00000011191	ak3 (ENSSTUG00000011187)	cdc37l1 (ENSSTUG00000011175)	ENSSTUG00000011136	ambp (ENSSTUG00000011111)	slc27a4 (ENSSTUG00000009316)	FAM163B (ENSSTUG00000009284)	dbh (ENSSTUG00000009236)	ENSSTUG00000009224	ENSSTUG00000009204	ENSSTUG00000009193	ENSSTUG00000009184	SH2D3C (ENSSTUG00000009073)	STRBP (ENSSTUG00000008853)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000120282	ENSSSAG00000049798	ENSSSAG00000110029	RAD23B (ENSSSAG00000049773)	ENSSSAG00000049762	TMEM38B (ENSSSAG00000049754)	ENSSSAG00000049723	ENSSSAG00000091091	ENSSSAG00000047303	KIAA2026 (ENSSSAG00000047252)	ENSSSAG00000118206	ERMP1 (ENSSSAG00000046733)	RIC1 (ENSSSAG00000045143)	pdl1 (ENSSSAG00000045082)	plgrkt (ENSSSAG00000045051)	ENSSSAG00000091202 ##22	ENSSSAG00000118979	jak2a (ENSSSAG00000042825)	ENSSSAG00000120245	cdc37l1 (ENSSSAG00000042669)	ENSSSAG00000042657	ambp (ENSSSAG00000042557)	slc27a4 (ENSSSAG00000041801)	ENSSSAG00000093188	ENSSSAG00000093843	dbh (ENSSSAG00000041010)	ENSSSAG00000033888	ENSSSAG00000113260	ENSSSAG00000075290	ENSSSAG00000032306	ENSSSAG00000093773
Huchen	MODERN SPECIES	2909													ENSHHUG00000039519	RIC1 (ENSHHUG00000039488)	PDCD1LG2 (ENSHHUG00000039479)	rln1 (ENSHHUG00000039478) ##22	ENSHHUG00000039470
Salmoninae	ANCESTRAL SPECIES	397	ENSGT00940000166449.m.a	ENSGT00950000183175.B.b.g	ENSGT00940000156229.cb	ENSGT00390000012078.b.jb	ENSGT00940000156411.od.a.a	ENSGT00390000018845.e.g	ENSGT00940000157066.o.a	ENSGT00940000157066.p.c	ENSGT00940000166601.g	ENSGT00390000008296.b.b.a	ENSGT00390000011483.a	ENSGT00530000063839.s.a	ENSGT00390000002955.c	ENSGT00940000161373.z	ENSGT00390000000375	ENSGT00940000154396.a.f ##22	ENSGT00940000155640.b.e.a	ENSGT00530000063404.a	ENSGT00940000155120.a	ENSGT00390000013443.d.c
Huchen	MODERN SPECIES	608													RIC1 (ENSHHUG00000021433)	ENSHHUG00000021460	plgrkt (ENSHHUG00000021485)	ENSHHUG00000021491 ##22	jak2a (ENSHHUG00000021513)	rcl1 (ENSHHUG00000024022)	ak3 (ENSHHUG00000024140)	cdc37l1 (ENSHHUG00000024145)	ENSHHUG00000024162	nrarpa (ENSHHUG00000024169)	ambp (ENSHHUG00000024188)	ptgdsa (ENSHHUG00000024192)	slc27a4 (ENSHHUG00000024207)	swi5 (ENSHHUG00000024372)	FAM163B (ENSHHUG00000024394)	ENSHHUG00000024395	sardh (ENSHHUG00000024399)
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00390000017459	ENSGT00940000166449.m.a	ENSGT00950000183175.B.b.g	ENSGT00940000156229.cb	ENSGT00390000012078.b.jb	ENSGT00940000156411.od.a.a	ENSGT00390000018845.e.g	ENSGT00940000157066.p.c	ENSGT00940000166601.g	ENSGT00390000008296.b.b.a	ENSGT00390000011483.a	ENSGT00530000063839.s.a	ENSGT00390000002955.c	ENSGT00940000161373.z	ENSGT00390000000375.k.a	ENSGT00940000154396.a.f ##22	ENSGT00940000155640.b.e.a	ENSGT00530000063404.a	ENSGT00940000155120.a	ENSGT00390000013443.d.c	ENSGT00940000161928	ENSGT00940000160109.c	ENSGT01100000263580	ENSGT00940000158646.e	ENSGT00390000009349	ENSGT00940000159387.f.c	ENSGT00530000063085.B.d	ENSGT00940000157589	ENSGT01030000234558.D.a.e	ENSGT00390000005101	ENSGT00940000154130.a.b.e.e
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000166449.m.a	ENSGT00950000183175.B.b.g	ENSGT00940000156229.cb	ENSGT00390000012078.b.jb	ENSGT00940000156411.od.a.a	ENSGT00390000018845.e.g	ENSGT00940000157066.p.c	ENSGT00940000166601.g	ENSGT00390000008296.b.b.a	ENSGT00390000011483.a	ENSGT00390000009531.f	ENSGT00530000063839.s.a	ENSGT00390000002955.c.a	ENSGT00940000161373.z	ENSGT00390000000375.k.a	ENSGT00940000154396.a.f ##22	ENSGT00940000155640.b.e.a	ENSGT00530000063404.a	ENSGT00940000155120.a	ENSGT00390000013443.d.c	ENSGT00940000161928	ENSGT00940000160109.c	ENSGT01100000263580	ENSGT00940000158646.e	ENSGT00390000009349	ENSGT00940000159387.f.c	ENSGT00530000063085.B.d	ENSGT00940000166736	ENSGT00940000157589	ENSGT01030000234558.D.a.e	ENSGT00390000005101
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000036558	ENSOMYG00000036548	TMEM38B (ENSOMYG00000036537)	ENSOMYG00000054684	ENSOMYG00000054303	ENSOMYG00000036526	ENSOMYG00000067857	oaz1b (ENSOMYG00000036517)	ENSOMYG00000036094	KIAA2026 (ENSOMYG00000035980)	MLANA (ENSOMYG00000065790)	ERMP1 (ENSOMYG00000035370)	RIC1 (ENSOMYG00000033226)	ENSOMYG00000032862	plgrkt (ENSOMYG00000032846)	ENSOMYG00000056549 ##22	jak2a (ENSOMYG00000031302)	ENSOMYG00000062442	rcl1 (ENSOMYG00000030970)	ak3 (ENSOMYG00000030963)	ENSOMYG00000061853	cdc37l1 (ENSOMYG00000030941)	ENSOMYG00000068007	nrarpa (ENSOMYG00000030920)	ambp (ENSOMYG00000030902)	ptgdsa (ENSOMYG00000030891)	slc27a4 (ENSOMYG00000030841)	ENSOMYG00000030858	ENSOMYG00000030856	ENSOMYG00000056815	ENSOMYG00000067702
Oncorhynchus_a	ANCESTRAL SPECIES	73	ENSGT00390000017459	ENSGT00940000166449.m.a	ENSGT00950000183175.B.b.g	ENSGT00940000156229.cb	ENSGT00390000012078.b.jb	ENSGT00940000156411.od.a.a	ENSGT00390000018845.e.g	ENSGT00940000157066.p.c	ENSGT00940000166601.g	ENSGT00390000008296.b.b.a	ENSGT00390000011483.a	ENSGT00530000063839.s.a	ENSGT00390000002955.c.a	ENSGT00940000161373.z	ENSGT00390000000375.k.a	ENSGT00940000154396.a.f ##22	ENSGT00940000155640.b.e.a	ENSGT00530000063404.a	ENSGT00940000155120.a	ENSGT00390000013443.d.c	ENSGT00940000161928	ENSGT00940000160109.c	ENSGT01100000263580	ENSGT00940000158646.e	ENSGT00390000009349	ENSGT00940000159387.f.c	ENSGT00530000063085.B.d	ENSGT00940000166736	ENSGT00940000157589	ENSGT01030000234558.D.a.e	ENSGT00390000005101
Chinook salmon	MODERN SPECIES	12	ITGA1 (ENSOTSG00005047641)	GOLPH3 (ENSOTSG00005047640)	ENSOTSG00005047639	PSTPIP2 (ENSOTSG00005047638)	mtrex (ENSOTSG00005047557)	PLPP1 (ENSOTSG00005047518)	CSGALNACT1 (ENSOTSG00005047516)	nxnl2 (ENSOTSG00005047515)	ENSOTSG00005047514	ENSOTSG00005047513	ENSOTSG00005047512	ENSOTSG00005046783	RIC1 (ENSOTSG00005046764)	ENSOTSG00005046762	plgrkt (ENSOTSG00005046761)	ENSOTSG00005046759 ##22	jak2a (ENSOTSG00005046619)	rcl1 (ENSOTSG00005046614)	ak3 (ENSOTSG00005046612)	cdc37l1 (ENSOTSG00005046610)	ENSOTSG00005046518	gna14 (ENSOTSG00005046517)	ENSOTSG00005046516	hnrpkl (ENSOTSG00005046505)	ntrk2b (ENSOTSG00005046502)	kcmf1 (ENSOTSG00005046500)	camk4 (ENSOTSG00005046498)	wdr36 (ENSOTSG00005046489)	slc25a46 (ENSOTSG00005046488)	ENSOTSG00005046487	man2a1 (ENSOTSG00005046423)
Coho salmon	MODERN SPECIES	15	ENSOKIG00005006197	ENSOKIG00005006168	klf4 (ENSOKIG00005006137)	ENSOKIG00005006127	RAD23B (ENSOKIG00005006082)	ZNF462 (ENSOKIG00005044500)	TMEM38B (ENSOKIG00005044482)	PRAG1 (ENSOKIG00005044465)	oaz1b (ENSOKIG00005044455)	ENSOKIG00005044331	KIAA2026 (ENSOKIG00005044294)	ERMP1 (ENSOKIG00005044136)	RIC1 (ENSOKIG00005040592)	ENSOKIG00005040367	plgrkt (ENSOKIG00005040331)	rln1 (ENSOKIG00005040300) ##22	ENSOKIG00005040293	rcl1 (ENSOKIG00005040117)	jak2a (ENSOKIG00005039463)	ak3 (ENSOKIG00005039379)	cdc37l1 (ENSOKIG00005039354)	nrarpa (ENSOKIG00005039340)	ambp (ENSOKIG00005039290)	ptgdsa (ENSOKIG00005039272)	slc27a4 (ENSOKIG00005037165)	swi5 (ENSOKIG00005037057)	FAM163B (ENSOKIG00005037047)	sardh (ENSOKIG00005034459)	CERCAM (ENSOKIG00005034298)	urm1 (ENSOKIG00005034274)	SH2D3C (ENSOKIG00005034181)
Salmo	ANCESTRAL SPECIES	54	ENSGT00390000017459	ENSGT00940000166449.m.a	ENSGT00950000183175.B.b.g	ENSGT00940000156229.cb	ENSGT00390000012078.b.jb	ENSGT00940000156411.od.a.a	ENSGT00390000018845.e.g	ENSGT00940000157066.p.c	ENSGT00940000166601.g	ENSGT00390000008296.b.b.a	ENSGT00390000011483.a	ENSGT00530000063839.s.a	ENSGT00390000002955.c	ENSGT00940000161373.z	ENSGT00390000000375.k.a	ENSGT00940000154396.a.f ##22	ENSGT00940000155640.b.e.a	ENSGT00530000063404.a	ENSGT00940000155120.a	ENSGT00390000013443.d.c	ENSGT00940000161928	ENSGT00940000160109.c	ENSGT01100000263580	ENSGT00940000158646.e	ENSGT00390000009349	ENSGT00940000159387.f.c	ENSGT00530000063085.B.d	ENSGT00940000157589	ENSGT01030000234558.D.a.e	ENSGT00390000005101	ENSGT00940000154130.a.b.e.e
River trout	MODERN SPECIES	15	nop14 (ENSSTUG00000003568)	ENSSTUG00000003971	SNCA (ENSSTUG00000003984)	klf4 (ENSSTUG00000004009)	rad23b (ENSSTUG00000004025)	ZNF462 (ENSSTUG00000004041)	TMEM38B (ENSSTUG00000004089)	PRAG1 (ENSSTUG00000004115)	oaz1b (ENSSTUG00000004143)	ENSSTUG00000004222	KIAA2026 (ENSSTUG00000004550)	ERMP1 (ENSSTUG00000004580)	RIC1 (ENSSTUG00000004838)	ENSSTUG00000004939	plgrkt (ENSSTUG00000004953)	ENSSTUG00000004962 ##22	jak2a (ENSSTUG00000004997)	ENSSTUG00000005638	rcl1 (ENSSTUG00000005648)	ak3 (ENSSTUG00000005741)	cdc37l1 (ENSSTUG00000005759)	nrarpa (ENSSTUG00000005772)	ambp (ENSSTUG00000005783)	ptgdsa (ENSSTUG00000005895)	slc27a4 (ENSSTUG00000005957)	ENSSTUG00000007705	FAM163B (ENSSTUG00000007720)	dbh (ENSSTUG00000007726)	ENSSTUG00000007743	sardh (ENSSTUG00000007829)	CERCAM (ENSSTUG00000009844)
Atlantic salmon	MODERN SPECIES		ENSSSAG00000003181	klf4 (ENSSSAG00000081862)	rad23b (ENSSSAG00000003200)	ENSSSAG00000003216	TMEM38B (ENSSSAG00000003237)	ENSSSAG00000003248	ENSSSAG00000003258	ENSSSAG00000003413	KIAA2026 (ENSSSAG00000096015)	ENSSSAG00000093129	ERMP1 (ENSSSAG00000004458)	ENSSSAG00000110808	RIC1 (ENSSSAG00000004757)	ENSSSAG00000005670	plgrkt (ENSSSAG00000005674)	ENSSSAG00000095399 ##22	jak2a (ENSSSAG00000005849)	rcl1 (ENSSSAG00000010077)	AK3 (ENSSSAG00000082095)	cdc37l1 (ENSSSAG00000010118)	ENSSSAG00000098617	nrarpa (ENSSSAG00000119476)	AMBP (ENSSSAG00000010137)	ptgdsa (ENSSSAG00000010165)	slc27a4 (ENSSSAG00000010194)	swi5 (ENSSSAG00000010881)	FAM163B (ENSSSAG00000095907)	dbh (ENSSSAG00000011014)	sardh (ENSSSAG00000012085)	urm1 (ENSSSAG00000117928)	ENSSSAG00000040878
Northern pike	MODERN SPECIES	13	SNCA (ENSELUG00000008015)	klf4 (ENSELUG00000001166)	rad23b (ENSELUG00000007882)	ZNF462 (ENSELUG00000007847)	TMEM38B (ENSELUG00000007799)	ENSELUG00000007781	PRAG1 (ENSELUG00000007761)	oaz1b (ENSELUG00000007749)	UHRF2 (ENSELUG00000007719)	KIAA2026 (ENSELUG00000007646)	MLANA (ENSELUG00000007634)	ERMP1 (ENSELUG00000007603)	RIC1 (ENSELUG00000007545)	PDCD1LG2 (ENSELUG00000007468)	plgrkt (ENSELUG00000007449)	rln1 (ENSELUG00000029279) ##22	jak2a (ENSELUG00000007410)	rcl1 (ENSELUG00000007353)	ak3 (ENSELUG00000001121)	cdc37l1 (ENSELUG00000007209)	ENSELUG00000007181	nrarpa (ENSELUG00000007137)	ambp (ENSELUG00000007109)	ptgdsa (ENSELUG00000034248)	slc27a4 (ENSELUG00000007023)	ENSELUG00000030044	FAM163B (ENSELUG00000028986)	dbh (ENSELUG00000006960)	sardh (ENSELUG00000006912)	CERCAM (ENSELUG00000006806)	urm1 (ENSELUG00000006757)
Spotted gar	MODERN SPECIES	658	klf4 (ENSLOCG00000009967)	rad23b (ENSLOCG00000009976)	ZNF462 (ENSLOCG00000009983)	TMEM38B (ENSLOCG00000009996)	coq2 (ENSLOCG00000010011)	PRAG1 (ENSLOCG00000010023)	oaz1b (ENSLOCG00000010027)	gldc (ENSLOCG00000010035)	UHRF2 (ENSLOCG00000010051)	KIAA2026 (ENSLOCG00000010062)	MLANA (ENSLOCG00000010071)	ERMP1 (ENSLOCG00000010085)	RIC1 (ENSLOCG00000010095)	CD274 (ENSLOCG00000010112)	plgrkt (ENSLOCG00000010124)	ENSLOCG00000010131 ##22	jak2b (ENSLOCG00000010137)	rcl1 (ENSLOCG00000010148)	DHX29 (ENSLOCG00000010159)	mtrex (ENSLOCG00000010186)	PLPP1 (ENSLOCG00000010196)	CSGALNACT1 (ENSLOCG00000010210)	nxnl2 (ENSLOCG00000010217)	ENSLOCG00000010223	ENSLOCG00000010231	ENSLOCG00000010238	MFSD14B (ENSLOCG00000010247)	ENSLOCG00000010257	ENSLOCG00000010271	ENSLOCG00000010279	ENSLOCG00000010286
Reedfish	MODERN SPECIES	15	ENSECRG00000006837	MLANA (ENSECRG00000006826)	ENSECRG00000006801	zgc:114200 (ENSECRG00000006786)	tpm2 (ENSECRG00000006754)	tln1 (ENSECRG00000006726)	ENSECRG00000006709	ENSECRG00000006690	SLC46A2 (ENSECRG00000006677)	ERMP1 (ENSECRG00000006657)	ENSECRG00000006649	ERMP1 (ENSECRG00000006600)	RIC1 (ENSECRG00000006555)	ENSECRG00000006544	plgrkt (ENSECRG00000017800)	ENSECRG00000017792 ##22	jak2b (ENSECRG00000017718)	rcl1 (ENSECRG00000017674)	esm1 (ENSECRG00000017659)	ENSECRG00000017625	ENSECRG00000017593	ENSECRG00000017560	ENSECRG00000017531	hint2 (ENSECRG00000017505)	ENSECRG00000017467	ENSECRG00000017441	ENSECRG00000017253	ENSECRG00000017195	ENSECRG00000017180	ENSECRG00000017159	ENSECRG00000017141
Elephant shark	MODERN SPECIES	1506	UBA6 (ENSCMIG00000017130)	gnrhr4 (ENSCMIG00000017381)	ENSCMIG00000017387	ENSCMIG00000017390	SNAPC3 (ENSCMIG00000017394)	ENSCMIG00000017404	TTC39B (ENSCMIG00000017416)	ENSCMIG00000017430	frem1a (ENSCMIG00000017433)	ENSCMIG00000017448	zdhhc21 (ENSCMIG00000017451)	NFIB (ENSCMIG00000017467)	MPDZ (ENSCMIG00000017633)	ENSCMIG00000017872	PLGRKT (ENSCMIG00000017874)	ENSCMIG00000017875 #22	jak2b (ENSCMIG00000017879)	DNAH6 (ENSCMIG00000017938)	ENSCMIG00000017986	chrnb3b (ENSCMIG00000017990)	chrna6 (ENSCMIG00000017992)	ENSCMIG00000017999	THUMPD2 (ENSCMIG00000018003)	ENSCMIG00000018007	ENSCMIG00000018009	ENSCMIG00000018011	ENSCMIG00000018013	lingo2b (ENSCMIG00000018014)	ENSCMIG00000018016	SLC44A1 (ENSCMIG00000018040)	ENSCMIG00000018218
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154396 #22
Hagfish	MODERN SPECIES	513	FEM1B (ENSEBUG00000000907)	ENSEBUG00000016850	arl15a (ENSEBUG00000016195)	FST (ENSEBUG00000009525)	MOCS2 (ENSEBUG00000015724)	ENSEBUG00000008154	ENSEBUG00000006748	ENSEBUG00000012722	ENSEBUG00000008555	ENSEBUG00000002095	ENSEBUG00000007430	rps28 (ENSEBUG00000006971)	ENSEBUG00000010980	ENSEBUG00000010223	ENSEBUG00000016672	ENSEBUG00000005531 #22	ENSEBUG00000010736	ENSEBUG00000013385	wls (ENSEBUG00000009888) #9	ENSEBUG00000004452	kcnv2b (ENSEBUG00000006677)	osbpl9 (ENSEBUG00000010125)	ENSEBUG00000001165	ENSEBUG00000001991	ENSEBUG00000007732	ENSEBUG00000016490	ENSEBUG00000009219	ENSEBUG00000016051	ENSEBUG00000008087	ENSEBUG00000010533	ENSEBUG00000001288