Cichlidae	ANCESTRAL SPECIES	18	ENSGT00940000154824.g.b	ENSGT00940000157532.a	ENSGT00390000010734 #10	ENSGT00510000048394 #11	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #13	ENSGT00940000160959 #14	ENSGT00940000167861 #15	ENSGT00500000044922 #16	ENSGT00940000154606 #17	ENSGT00940000160537	ENSGT00390000005996 #18	ENSGT00720000108873 #19	ENSGT00530000063693.a.b #20	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00520000059940	ENSGT00550000075074	ENSGT00400000023815	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040	ENSGT00940000163681
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT00940000154824.g.b	ENSGT00940000157532.a	ENSGT00390000010734 #10	ENSGT00510000048394 #11	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #13	ENSGT00940000160959 #14	ENSGT00940000167861 #15	ENSGT00500000044922 #16	ENSGT00940000154606 #17	ENSGT00940000160537	ENSGT00390000005996 #18	ENSGT00720000108873 #19	ENSGT00530000063693.a.b #20	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00520000059940.f	ENSGT00550000075074	ENSGT00400000023815.e	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040	ENSGT00940000163681
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19			ENSGT00390000010734 #10	ENSGT00510000048394 #11	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #13	ENSGT00940000160959 #14	ENSGT00940000167861 #15	ENSGT00500000044922 #16	ENSGT00940000154606 #17	ENSGT00940000160537	ENSGT00390000005996 #18	ENSGT00720000108873 #19	ENSGT00530000063693.a.b #20	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00520000059940.f	ENSGT00550000075074	ENSGT00400000023815.e	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040	ENSGT00940000163681
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00940000153725.a.b.b #8	ENSGT00940000164689 #9	ENSGT00390000010734 #10	ENSGT00510000048394 #11	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #13	ENSGT00940000160959 #14	ENSGT00940000167861 #15	ENSGT00500000044922 #16	ENSGT00940000154606 #17	ENSGT00940000160537	ENSGT00390000005996 #18	ENSGT00720000108873 #19	ENSGT00530000063693.a.b #20	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00520000059940.f	ENSGT00550000075074	ENSGT00400000023815.e	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040	ENSGT00940000163681
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00940000153725.a.b.b #8	ENSGT00940000164689 #9	ENSGT00390000010734 #10	ENSGT00510000048394 #11	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #13	ENSGT00940000160959 #14	ENSGT00940000167861 #15	ENSGT00500000044922 #16	ENSGT00940000154606 #17	ENSGT00940000160537	ENSGT00390000005996 #18	ENSGT00720000108873 #19	ENSGT00530000063693.a.b #20	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00520000059940.f	ENSGT01000000216822	ENSGT00550000075074	ENSGT00400000023815.e	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00940000158957 #7	ENSGT00940000153725.a.b.b #8	ENSGT00940000164689 #9	ENSGT00390000010734 #10	ENSGT00510000048394 #11	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #13	ENSGT00940000160959 #14	ENSGT00940000167861 #15	ENSGT00500000044922 #16	ENSGT00940000154606 #17	ENSGT00390000005996 #18	ENSGT00720000108873 #19	ENSGT00530000063693.a.b #20	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000155807.a	ENSGT00940000158667	ENSGT00520000059940.f	ENSGT01000000216822	ENSGT00550000075074	ENSGT00400000023815.e	ENSGT00390000011379	ENSGT00940000160982	ENSGT00940000165685	ENSGT00940000158768	ENSGT00940000156920	ENSGT00390000016974	ENSGT00390000003564	ENSGT00940000157040	ENSGT00940000163681
Zebra mbuna	MODERN SPECIES	26	zgc:165532 (ENSMZEG00005011645) #7	rgs9bp (ENSMZEG00005011659) #8	zgc:56231 (ENSMZEG00005011672) #9	pomp (ENSMZEG00005011723) #10	C11orf65 (ENSMZEG00005011742) #11	RAMP3 (ENSMZEG00005011753) #12	smyhc1 (ENSMZEG00005011789) #13	ENSMZEG00005011848 #14	ENSMZEG00005011861 #15	ngdn (ENSMZEG00005011874) #16	pabpn1 (ENSMZEG00005011904) #17	thtpa (ENSMZEG00005011917) #18	dcaf11 (ENSMZEG00005011945) #19	ENSMZEG00005011977 #20	psme1 (ENSMZEG00005011982) #21	pck2 (ENSMZEG00005011991) #22
Eastern happy	MODERN SPECIES	21	zgc:165532 (ENSACLG00000015893) #7	rgs9bp (ENSACLG00000015921) #8	zgc:56231 (ENSACLG00000015944) #9	pomp (ENSACLG00000015996) #10	C11orf65 (ENSACLG00000016042) #11	ENSACLG00000016074 #12	smyhc1 (ENSACLG00000016113) #13	ENSACLG00000016279 #14	ENSACLG00000016282 #15	ngdn (ENSACLG00000016289) #16	pabpn1 (ENSACLG00000016374) #17	thtpa (ENSACLG00000016541) #18	dcaf11 (ENSACLG00000016571) #19	ENSACLG00000016677 #20	psme1 (ENSACLG00000016690) #21	pck2 (ENSACLG00000016831) #22	ENSACLG00000019395	fen1 (ENSACLG00000019405)	tm9sf1 (ENSACLG00000019468)	ENSACLG00000019545	ENSACLG00000019557	ENSACLG00000019582	ENSACLG00000019674	ENSACLG00000019684	ENSACLG00000019689	ENSACLG00000019706	ENSACLG00000019729	ENSACLG00000019734	IPO4 (ENSACLG00000019742)	si:ch211-196f5.2 (ENSACLG00000019806)	rec8b (ENSACLG00000019830)
P. nyererei	MODERN SPECIES	445	zgc:165532 (ENSPNYG00000013522) #7	zgc:56231 (ENSPNYG00000013486) #9	pomp (ENSPNYG00000013453) #10	C11orf65 (ENSPNYG00000013425) #11	RAMP3 (ENSPNYG00000013395) #12	smyhc1 (ENSPNYG00000013319) #13	ENSPNYG00000013244 #14	ENSPNYG00000013207 #15	ngdn (ENSPNYG00000013193) #16	pabpn1 (ENSPNYG00000013182) #17	ENSPNYG00000013169	thtpa (ENSPNYG00000013137) #18	dcaf11 (ENSPNYG00000013112) #19	FITM1 (ENSPNYG00000013103) #20	psme1 (ENSPNYG00000013040) #21	pck2 (ENSPNYG00000012998) #22
Burton s mouthbrooder	MODERN SPECIES	745	rgs9bp (ENSHBUG00000019187) #8	zgc:56231 (ENSHBUG00000019234) #9	pomp (ENSHBUG00000019278) #10	C11orf65 (ENSHBUG00000019309) #11	RAMP3 (ENSHBUG00000000573) #12	MYH6 (ENSHBUG00000019431) #13	ENSHBUG00000019445 #14	ENSHBUG00000000581 #15	ngdn (ENSHBUG00000019489) #16	pabpn1 (ENSHBUG00000019523) #17	ENSHBUG00000019533	thtpa (ENSHBUG00000019630) #18	dcaf11 (ENSHBUG00000019653) #19	ENSHBUG00000019671 #20	psme1 (ENSHBUG00000019773) #21	pck2 (ENSHBUG00000019834) #22
Lyretail cichlid	MODERN SPECIES	586		pomp (ENSNBRG00000024002) #10	C11orf65 (ENSNBRG00000023998) #11	RAMP3 (ENSNBRG00000023988) #12	smyhc1 (ENSNBRG00000023981) #13	SLC22A17 (ENSNBRG00000023976) #14	ENSNBRG00000023972	ENSNBRG00000023968 #15	ngdn (ENSNBRG00000023962) #16	pabpn1 (ENSNBRG00000023955) #17	ENSNBRG00000023950	thtpa (ENSNBRG00000023945) #18	dcaf11 (ENSNBRG00000023938) #19	FITM1 (ENSNBRG00000023935) #20	psme1 (ENSNBRG00000023931) #21	pck2 (ENSNBRG00000023927) #22
Nile tilapia	MODERN SPECIES	21	ENSONIG00000041120	pomp (ENSONIG00000042065) #10	C11orf65 (ENSONIG00000008084) #11	RAMP3 (ENSONIG00000042166) #12	smyhc1 (ENSONIG00000008086) #13	ENSONIG00000034524	SLC22A17 (ENSONIG00000008102) #14	ngdn (ENSONIG00000008106) #16	ENSONIG00000027968 #15	pabpn1 (ENSONIG00000008112) #17	ENSONIG00000035580	thtpa (ENSONIG00000035646) #18	dcaf11 (ENSONIG00000008114) #19	ENSONIG00000027305 #20	psme1 (ENSONIG00000008121) #21	pck2 (ENSONIG00000008131) #22	ENSONIG00000030857	ENSONIG00000003572	ENSONIG00000029992	snx16 (ENSONIG00000003585)	ASIP2 (ENSONIG00000029778)	WWP1 (ENSONIG00000003591)	rmdn1 (ENSONIG00000003606)	cpne3 (ENSONIG00000003611)	cpne3 (ENSONIG00000003616)	cpne3 (ENSONIG00000003619)	idi1 (ENSONIG00000028842)	wdr37 (ENSONIG00000003633)	ADARB2 (ENSONIG00000003634)	PFKP (ENSONIG00000003640)	klf6a (ENSONIG00000041764)
Midas cichlid	MODERN SPECIES	90	NSMAF (ENSACIG00000021322)	ENSACIG00000021368	ENSACIG00000021410	MMP16 (ENSACIG00000021506)	pomp (ENSACIG00000021568) #10	ENSACIG00000021583 #12	smyhc1 (ENSACIG00000021595) #13	ENSACIG00000021651 #14	ngdn (ENSACIG00000021676) #16	ENSACIG00000021731 #15	pabpn1 (ENSACIG00000021744) #17	thtpa (ENSACIG00000021782) #18	dcaf11 (ENSACIG00000021796) #19	ENSACIG00000021823 #20	psme1 (ENSACIG00000021829) #21	pck2 (ENSACIG00000021847) #22