Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00940000166463	ENSGT00390000000911.g	ENSGT00510000048394	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #11	ENSGT01060000248931	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000160537	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT01100000263571.i.b	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT00940000165685	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00390000010734 #14	ENSGT00390000000911.g	ENSGT00510000048394	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #11	ENSGT01060000248931	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000160537	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT01100000263571.i.b	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT00940000165685	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36
Perciformes	ANCESTRAL SPECIES	21	ENSGT00940000157532.a #8	ENSGT00390000010734 #14	ENSGT00390000000911.g	ENSGT00510000048394	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #11	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000160537	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT00940000165685	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36	ENSGT00940000163681 #37
Cottioidei	ANCESTRAL SPECIES	21	ENSGT00940000154824.g.b #7	ENSGT00940000157532.a #8	ENSGT00940000154805.b.g.e.a #11	ENSGT00940000161026 #12	ENSGT00510000048394	ENSGT00390000010734 #14	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000174709	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT01010000229360 #31	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36	ENSGT00940000163681 #37
Lumpfish	MODERN SPECIES	12	ENSCLMG00005013294 #7	MMP16 (ENSCLMG00005013281) #8	ENSCLMG00005013279 #9	ENSCLMG00005013278 #10	ENSCLMG00005010997 #11	RAMP3 (ENSCLMG00005010990) #12	ENSCLMG00005010989 #13	pomp (ENSCLMG00005010954) #14	SLC22A17 (ENSCLMG00005010953) #15	ENSCLMG00005010952 #16	ngdn (ENSCLMG00005010951) #17	pabpn1 (ENSCLMG00005010950) #18	thtpa (ENSCLMG00005010948) #19	dcaf11 (ENSCLMG00005010921) #20	psme1 (ENSCLMG00005010915) #21	pck2 (ENSCLMG00005009696) #22	ENSCLMG00005009675 #23	fen1 (ENSCLMG00005009661) #24	tm9sf1 (ENSCLMG00005009553) #25	nanog (ENSCLMG00005009535) #26	IPO4 (ENSCLMG00005009496) #27	si:ch211-196f5.2 (ENSCLMG00005009494) #28	rec8b (ENSCLMG00005009491) #29	pdcd6 (ENSCLMG00005009458) #30	ENSCLMG00005009455 #31	bmp6 (ENSCLMG00005009454) #32	txndc5 (ENSCLMG00005009112) #33	bloc1s5 (ENSCLMG00005009110) #34	EEF1E1 (ENSCLMG00005009108) #35	slc35b3 (ENSCLMG00005008958) #36	ENSCLMG00005008949 #37
Stickleback	MODERN SPECIES	20	MMP16 (ENSGACG00000002135) #8	smyhc1 (ENSGACG00000002145) #11	RAMP3 (ENSGACG00000002155) #12	ENSGACG00000002156	pomp (ENSGACG00000002157) #14	SLC22A17 (ENSGACG00000002158) #15	ENSGACG00000002163 #16	ngdn (ENSGACG00000002164) #17	ENSGACG00000002166	pabpn1 (ENSGACG00000002167) #18	ENSGACG00000002178	thtpa (ENSGACG00000002180) #19	dcaf11 (ENSGACG00000002183) #20	ENSGACG00000002190	psme1 (ENSGACG00000002192) #21	pck2 (ENSGACG00000002198) #22	ENSGACG00000002235	ENSGACG00000002239	ENSGACG00000002241	fen1 (ENSGACG00000002244) #24	tm9sf1 (ENSGACG00000002268) #25	ENSGACG00000002275	IPO4 (ENSGACG00000002276) #27	si:ch211-196f5.2 (ENSGACG00000002283) #28	pdcd6 (ENSGACG00000002286) #30	bmp6 (ENSGACG00000002307) #32	txndc5 (ENSGACG00000002309) #33	bloc1s5 (ENSGACG00000002321) #34	EEF1E1 (ENSGACG00000002324) #35	slc35b3 (ENSGACG00000002326) #36	tfap2a (ENSGACG00000002334)
Perciformes_a	ANCESTRAL SPECIES	22	ENSGT00940000157532.a #8	ENSGT00390000010734 #14	ENSGT00390000000911.g	ENSGT00510000048394	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #11	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000160537	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT00940000165685	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36	ENSGT00940000163681 #37
Pike perch	MODERN SPECIES	120	ENSSLUG00000021062 #7	MMP16 (ENSSLUG00000020882) #8	pomp (ENSSLUG00000020868) #14	ENSSLUG00000020859	RAMP3 (ENSSLUG00000020854) #12	smyhc2 (ENSSLUG00000020635) #11	SLC22A17 (ENSSLUG00000020602) #15	cebp1 (ENSSLUG00000020597) #16	ngdn (ENSSLUG00000020590) #17	pabpn1 (ENSSLUG00000020577) #18	ENSSLUG00000020565	thtpa (ENSSLUG00000020559) #19	dcaf11 (ENSSLUG00000020434) #20	ENSSLUG00000020420	psme1 (ENSSLUG00000020392) #21	pck2 (ENSSLUG00000019926) #22	fen1 (ENSSLUG00000019895) #24	tm9sf1 (ENSSLUG00000019752) #25	nanog (ENSSLUG00000019741) #26	IPO4 (ENSSLUG00000019727) #27	si:ch211-196f5.2 (ENSSLUG00000019717) #28	rec8b (ENSSLUG00000019713) #29	pdcd6 (ENSSLUG00000019702) #30	zgc:101569 (ENSSLUG00000019694)	bmp6 (ENSSLUG00000019684) #32	txndc5 (ENSSLUG00000019645) #33	bloc1s5 (ENSSLUG00000019636) #34	EEF1E1 (ENSSLUG00000019633) #35
Channel bull blenny	MODERN SPECIES	12	pomp (ENSCGOG00000008050) #14	ENSCGOG00000008043	ENSCGOG00000008037	ENSCGOG00000008035 #12	smyhc1 (ENSCGOG00000007065) #11	SLC22A17 (ENSCGOG00000007018) #15	ENSCGOG00000007015 #15	ENSCGOG00000007013 #16	ngdn (ENSCGOG00000007001) #17	pabpn1 (ENSCGOG00000006981) #18	ENSCGOG00000006979	thtpa (ENSCGOG00000006976) #19	dcaf11 (ENSCGOG00000006405) #20	FITM1 (ENSCGOG00000006400)	psme1 (ENSCGOG00000006276) #21	pck2 (ENSCGOG00000006096) #22	ENSCGOG00000006073 #23	fen1 (ENSCGOG00000005384) #24	tm9sf1 (ENSCGOG00000005211) #25	nanog (ENSCGOG00000005202) #26	IPO4 (ENSCGOG00000005135) #27	si:ch211-196f5.2 (ENSCGOG00000005127) #28	rec8b (ENSCGOG00000005125) #29	pdcd6 (ENSCGOG00000005034) #30	zgc:101569 (ENSCGOG00000005030)	bmp6 (ENSCGOG00000004997) #32	txndc5 (ENSCGOG00000004715) #33	bloc1s5 (ENSCGOG00000004706) #34	EEF1E1 (ENSCGOG00000004705) #35	slc35b3 (ENSCGOG00000004577) #36	ENSCGOG00000004554 #37
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00940000166463	ENSGT00390000000911.g	ENSGT00510000048394	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #11	ENSGT01060000248931	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000160537	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT01100000263571.i.b	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT00940000165685	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00940000154824.g.b #7	ENSGT00940000157532.a #8	ENSGT00390000010734 #14	ENSGT00510000048394	ENSGT00940000161026 #12	ENSGT00940000154805.b.g.e.a #11	ENSGT00940000160959 #15	ENSGT00940000167861 #16	ENSGT00500000044922 #17	ENSGT00940000154606 #18	ENSGT00940000160537	ENSGT00390000005996 #19	ENSGT00720000108873 #20	ENSGT00530000063693.a.b	ENSGT00950000183098.b.a.a #21	ENSGT00390000001912.e #22	ENSGT01100000263571.i.b	ENSGT00940000175338 #23	ENSGT00940000155807.a #24	ENSGT00940000158667 #25	ENSGT00670000098076 #26	ENSGT00550000075074 #27	ENSGT00400000023815 #28	ENSGT00390000011379 #29	ENSGT00940000160982 #30	ENSGT00940000165685	ENSGT00940000158768 #32	ENSGT00940000156920 #33	ENSGT00390000016974 #34	ENSGT00390000003564 #35	ENSGT00940000157040 #36
European seabass	MODERN SPECIES	8	ENSDLAG00005032318	ENSDLAG00005034966	ENSDLAG00005034128	ENSDLAG00005035123	ENSDLAG00005028415	MYH6 (ENSDLAG00005033563) #11	ENSDLAG00005035105 #15	ENSDLAG00005026905 #16	ngdn (ENSDLAG00005024544) #17	pabpn1 (ENSDLAG00005034419) #18	ENSDLAG00005024551	thtpa (ENSDLAG00005024554) #19	dcaf11 (ENSDLAG00005024560) #20	ENSDLAG00005032343	psme1 (ENSDLAG00005004361) #21	pck2 (ENSDLAG00005004476) #22	ENSDLAG00005027430	ENSDLAG00005004133	ENSDLAG00005034334	ENSDLAG00005008283	ENSDLAG00005021728	ENSDLAG00005010943	ENSDLAG00005018209	ENSDLAG00005010633	ENSDLAG00005028955	ENSDLAG00005028656	ENSDLAG00005026893	ENSDLAG00005027704	ENSDLAG00005003813	ENSDLAG00005029665	ENSDLAG00005034874 #11
Large yellow croaker	MODERN SPECIES	494	MMP16 (ENSLCRG00005015407) #8	pomp (ENSLCRG00005015381) #14	ENSLCRG00005015369	RAMP3 (ENSLCRG00005015356) #12	MYH6 (ENSLCRG00005015296) #11	MYH6 (ENSLCRG00005014589) #11	SLC22A17 (ENSLCRG00005014510) #15	cebp1 (ENSLCRG00005014502) #16	ngdn (ENSLCRG00005014493) #17	pabpn1 (ENSLCRG00005014487) #18	ENSLCRG00005014477	thtpa (ENSLCRG00005014474) #19	dcaf11 (ENSLCRG00005013900) #20	FITM1 (ENSLCRG00005013809)	psme1 (ENSLCRG00005013764) #21	pck2 (ENSLCRG00005013731) #22	ENSLCRG00005013719 #23	fen1 (ENSLCRG00005013708) #24	tm9sf1 (ENSLCRG00005013702) #25	IPO4 (ENSLCRG00005013634) #27	si:ch211-196f5.2 (ENSLCRG00005013597) #28	nanog (ENSLCRG00005013591) #26	REC8 (ENSLCRG00005013575) #29	pdcd6 (ENSLCRG00005013551) #30	zgc:101569 (ENSLCRG00005013547)	bmp6 (ENSLCRG00005013543) #32	txndc5 (ENSLCRG00005013541) #33	bloc1s5 (ENSLCRG00005013528) #34	EEF1E1 (ENSLCRG00005013519) #35	slc35b3 (ENSLCRG00005013494) #36	ENSLCRG00005013458 #37
Gilthead seabream	MODERN SPECIES	10	pomp (ENSSAUG00010008220) #14	ENSSAUG00010008227	ENSSAUG00010008236	RAMP3 (ENSSAUG00010008238) #12	smyhc3 (ENSSAUG00010008284) #11	ENSSAUG00010010984	SLC22A17 (ENSSAUG00010010986) #15	ENSSAUG00010010989 #16	ngdn (ENSSAUG00010010992) #17	pabpn1 (ENSSAUG00010010995) #18	ENSSAUG00010010996	thtpa (ENSSAUG00010010997) #19	dcaf11 (ENSSAUG00010011009) #20	FITM1 (ENSSAUG00010011606)	psme1 (ENSSAUG00010011610) #21	pck2 (ENSSAUG00010011633) #22	ENSSAUG00010011703	ENSSAUG00010011704	ENSSAUG00010011705	fen1 (ENSSAUG00010011706) #24	ENSSAUG00010011709 #23	tm9sf1 (ENSSAUG00010011717) #25	nanog (ENSSAUG00010011725) #26	IPO4 (ENSSAUG00010011737) #27	si:ch211-196f5.2 (ENSSAUG00010011790) #28	rec8b (ENSSAUG00010011793) #29	pdcd6 (ENSSAUG00010011800) #30	zgc:101569 (ENSSAUG00010011886)	bmp6 (ENSSAUG00010011890) #32	txndc5 (ENSSAUG00010011895) #33	bloc1s5 (ENSSAUG00010012166) #34
Ballan wrasse	MODERN SPECIES	117	trdmt1 (ENSLBEG00000027059)	RSU1 (ENSLBEG00000027083)	C1QL3 (ENSLBEG00000027098)	ENSLBEG00000027101	ENSLBEG00000027105	PDE1C (ENSLBEG00000027129)	ENSLBEG00000027168	SLC22A17 (ENSLBEG00000027192) #15	ENSLBEG00000027220 #16	ngdn (ENSLBEG00000027237) #17	pabpn1 (ENSLBEG00000027266) #18	thtpa (ENSLBEG00000027284) #19	dcaf11 (ENSLBEG00000027309) #20	FITM1 (ENSLBEG00000027334)	psme1 (ENSLBEG00000027340) #21	pck2 (ENSLBEG00000027351) #22