Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.a.a #30	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37
Naked mole-rat female	MODERN SPECIES	24	Aco2 (ENSHGLG00000015463) #7	POLR3H (ENSHGLG00000014795) #8	CSDC2 (ENSHGLG00000016778) #9	PMM1 (ENSHGLG00000016980) #10	DESI1 (ENSHGLG00000039030) #11	ENSHGLG00000018078 #12	SNU13 (ENSHGLG00000018808) #13	MEI1 (ENSHGLG00000017177) #14	CCDC134 (ENSHGLG00000015870) #15	SREBF2 (ENSHGLG00000010258) #16	SHISA8 (ENSHGLG00000006306) #17	TNFRSF13C (ENSHGLG00000005221) #18	CENPM (ENSHGLG00000005039) #19	SMIM45 (ENSHGLG00000020741) #20	ENSHGLG00000006998 #21	WBP2NL (ENSHGLG00000004979) #22	NAGA (ENSHGLG00000048767) #23	PHETA2 (ENSHGLG00000007647) #24	NDUFA6 (ENSHGLG00000040424) #25	ENSHGLG00000047435 #26	ENSHGLG00000004933 #27	ENSHGLG00000017416 #28	ENSHGLG00000018202 #29	ENSHGLG00000019048 #30	ENSHGLG00000010614 #31	TCF20 (ENSHGLG00000009579) #32	NFAM1 (ENSHGLG00000041183) #33	ENSHGLG00000039538 #34	ENSHGLG00000015706 #35	POLDIP3 (ENSHGLG00000013156) #36	CYB5R3 (ENSHGLG00000016147) #37
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.a.a ##13	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.a.a #30	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.a.a ##13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.u.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896.h #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000002918.a.b #10	ENSGT00940000153331.y.b.a.b #27	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896.h #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.a.h ##13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896.h #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Murinae	ANCESTRAL SPECIES	10	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Mus	ANCESTRAL SPECIES	11	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.b.a.b.a.a #27	ENSGT00940000153331.y.b.a.b.a.b #27	ENSGT00940000153331.y.a #27	ENSGT00940000153331.z #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b.a.a.a #27	ENSGT00940000153331.y.b.a.b.a.a.b #27	ENSGT00940000153331.y.b.a.b.a.b #27	ENSGT00940000153331.z #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b.a.a.a #27	ENSGT00940000153331.y.b.a.b.a.a.b.a.b #27	ENSGT00940000153331.y.b.a.b.a.b.a #27	ENSGT00940000153331.z #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960
Mus_C	ANCESTRAL SPECIES	17	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b