Gnathostomata	ANCESTRAL SPECIES																	ENSGT00530000063718.a.b #22
Euteleostomi	ANCESTRAL SPECIES	537													ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00390000017489	ENSGT00390000018898 #25
Sarcopterygii	ANCESTRAL SPECIES	636													ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22
Tetrapoda	ANCESTRAL SPECIES	261													ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000017489	ENSGT00390000018898 #25
Amniota	ANCESTRAL SPECIES	5	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159
Mammalia	ANCESTRAL SPECIES	8	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36
Theria	ANCESTRAL SPECIES	2	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00530000063825.A.c	ENSGT00510000047981.c
Eutheria	ANCESTRAL SPECIES	1	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00550000074840.z ##13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00550000074840.y.b.a.a ##13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Glires	ANCESTRAL SPECIES	4	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.a.a #30	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37
Naked mole-rat female	MODERN SPECIES	24	Aco2 (ENSHGLG00000015463) #7	POLR3H (ENSHGLG00000014795) #8	CSDC2 (ENSHGLG00000016778) #9	PMM1 (ENSHGLG00000016980) #10	DESI1 (ENSHGLG00000039030) #11	ENSHGLG00000018078 #12	SNU13 (ENSHGLG00000018808) #13	MEI1 (ENSHGLG00000017177) #14	CCDC134 (ENSHGLG00000015870) #15	SREBF2 (ENSHGLG00000010258) #16	SHISA8 (ENSHGLG00000006306) #17	TNFRSF13C (ENSHGLG00000005221) #18	CENPM (ENSHGLG00000005039) #19	SMIM45 (ENSHGLG00000020741) #20	ENSHGLG00000006998 #21	WBP2NL (ENSHGLG00000004979) #22	NAGA (ENSHGLG00000048767) #23	PHETA2 (ENSHGLG00000007647) #24	NDUFA6 (ENSHGLG00000040424) #25	ENSHGLG00000047435 #26	ENSHGLG00000004933 #27	ENSHGLG00000017416 #28	ENSHGLG00000018202 #29	ENSHGLG00000019048 #30	ENSHGLG00000010614 #31	TCF20 (ENSHGLG00000009579) #32	NFAM1 (ENSHGLG00000041183) #33	ENSHGLG00000039538 #34	ENSHGLG00000015706 #35	POLDIP3 (ENSHGLG00000013156) #36	CYB5R3 (ENSHGLG00000016147) #37
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.a.a ##13	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.a.a #30	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.a.a ##13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.r #27	ENSGT00940000153331.q.a.a.b #29	ENSGT00940000153331.q.a.b #28	ENSGT00940000153331.q.b #31	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Long-tailed chinchilla	MODERN SPECIES	120	POLR3H (ENSCLAG00000016948) #8	CSDC2 (ENSCLAG00000016705) #9	PMM1 (ENSCLAG00000016748) #10	DESI1 (ENSCLAG00000016871) #11	XRCC6 (ENSCLAG00000016669) #12	SNU13 (ENSCLAG00000017182) ##13	ENSCLAG00000016769	ENSCLAG00000017166 #14	CCDC134 (ENSCLAG00000017160) #15	SREBF2 (ENSCLAG00000017059) #16	ENSCLAG00000016102 #17	TNFRSF13C (ENSCLAG00000017293) #18	CENPM (ENSCLAG00000017021) #19	SMIM45 (ENSCLAG00000018061) #20	ENSCLAG00000017190 #21	WBP2NL (ENSCLAG00000017175) #22	NAGA (ENSCLAG00000017177) #23	PHETA2 (ENSCLAG00000017176) #24	SMDT1 (ENSCLAG00000016250)	NDUFA6 (ENSCLAG00000016285) #25	ENSCLAG00000017000 #26	ENSCLAG00000017186 #27	ENSCLAG00000016575 #29	ENSCLAG00000017192 #28	TCF20 (ENSCLAG00000016780) #32	NFAM1 (ENSCLAG00000016829) #33	RRP7A (ENSCLAG00000016715) #35	POLDIP3 (ENSCLAG00000016864) #36	CYB5R3 (ENSCLAG00000015151) #37	A4GALT (ENSCLAG00000018104)	ARFGAP3 (ENSCLAG00000016273)
Degu	MODERN SPECIES	197	ENSODEG00000013641 #8	CSDC2 (ENSODEG00000015733) #9	PMM1 (ENSODEG00000012155) #10	DESI1 (ENSODEG00000012652) #11	XRCC6 (ENSODEG00000015847) #12	SNU13 (ENSODEG00000015632) ##13	ENSODEG00000012993 #14	CCDC134 (ENSODEG00000013183) #15	ENSODEG00000013510 #16	ENSODEG00000013575 #16	SHISA8 (ENSODEG00000013588) #17	TNFRSF13C (ENSODEG00000012515) #18	CENPM (ENSODEG00000012293) #19	SMIM45 (ENSODEG00000020050) #20	ENSODEG00000012406 #21	WBP2NL (ENSODEG00000013016) #22	NAGA (ENSODEG00000013910) #23	ENSODEG00000020147	PHETA2 (ENSODEG00000020107) #24	SMDT1 (ENSODEG00000012796)	ENSODEG00000015286 #25	ENSODEG00000013060 #27	ENSODEG00000013045 #29	ENSODEG00000013572 #29
Guinea pig	MODERN SPECIES	28	ACO2 (ENSCPOG00000012642) #7	POLR3H (ENSCPOG00000012650) #8	CSDC2 (ENSCPOG00000037976) #9	PMM1 (ENSCPOG00000014618) #10	DESI1 (ENSCPOG00000038083) #11	XRCC6 (ENSCPOG00000003542) #12	SNU13 (ENSCPOG00000040165) #13	ENSCPOG00000010113 #14	CCDC134 (ENSCPOG00000000617) #15	SREBF2 (ENSCPOG00000013199) #16	SHISA8 (ENSCPOG00000040084) #17	TNFRSF13C (ENSCPOG00000022735) #18	CENPM (ENSCPOG00000013206) #19	SMIM45 (ENSCPOG00000036254) #20	ENSCPOG00000013212 #21	WBP2NL (ENSCPOG00000013214) #22	NAGA (ENSCPOG00000021759) #23	PHETA2 (ENSCPOG00000037974) #24	SMDT1 (ENSCPOG00000038038)	NDUFA6 (ENSCPOG00000014525) #25	ENSCPOG00000033145 #29	ENSCPOG00000038295 #29	ENSCPOG00000021372 #29	ENSCPOG00000024267 #29	ENSCPOG00000039514 #29	ENSCPOG00000033260 #27	ENSCPOG00000035752 #28	ENSCPOG00000035390 #29	ENSCPOG00000036957 #30	ENSCPOG00000034989 #30	ENSCPOG00000031413 #31
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.u.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Alpin marmot	MODERN SPECIES	76	ACO2 (ENSMMMG00000003764) #7	POLR3H (ENSMMMG00000003743) #8	CSDC2 (ENSMMMG00000003735) #9	PMM1 (ENSMMMG00000003696) #10	DESI1 (ENSMMMG00000003682) #11	ENSMMMG00000003671 #12	SNU13 (ENSMMMG00000003647) #13	ENSMMMG00000003627	MEI1 (ENSMMMG00000003545) #14	CCDC134 (ENSMMMG00000003517) #15	SREBF2 (ENSMMMG00000003454) #16	SHISA8 (ENSMMMG00000003440) #17	CENPM (ENSMMMG00000003399) #19	SMIM45 (ENSMMMG00000003396) #20	ENSMMMG00000003339 #21	ENSMMMG00000003326 #22	NAGA (ENSMMMG00000003269) #23	SMDT1 (ENSMMMG00000003226)	NDUFA6 (ENSMMMG00000003211) #25	ENSMMMG00000003138 #27	TCF20 (ENSMMMG00000003101) #32	NFAM1 (ENSMMMG00000003088) #33	SERHL2 (ENSMMMG00000003053)	RRP7A (ENSMMMG00000003038) #35	POLDIP3 (ENSMMMG00000003008) #36	CYB5R3 (ENSMMMG00000002994) #37	A4GALT (ENSMMMG00000002992)	ARFGAP3 (ENSMMMG00000002860)	PACSIN2 (ENSMMMG00000002833)	TTLL1 (ENSMMMG00000002791)	ENSMMMG00000002773
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22
Arctic ground squirrel	MODERN SPECIES	328	POLR3H (ENSUPAG00010005893) #8	CSDC2 (ENSUPAG00010005885) #9	PMM1 (ENSUPAG00010005870) #10	DESI1 (ENSUPAG00010005863) #11	XRCC6 (ENSUPAG00010005843) #12	SNU13 (ENSUPAG00010005841) #13	ENSUPAG00010005838	MEI1 (ENSUPAG00010005795) #14	CCDC134 (ENSUPAG00010005788) #15	SREBF2 (ENSUPAG00010005777) #16	SHISA8 (ENSUPAG00010005772) #17	TNFRSF13C (ENSUPAG00010005768) #18	CENPM (ENSUPAG00010005746) #19	SMIM45 (ENSUPAG00010005741) #20	ENSUPAG00010005721 #21	ENSUPAG00010005713 #22	ENSUPAG00010005707	ENSUPAG00010005703
Eurasian red squirrel	MODERN SPECIES	14	POLR3H (ENSSVLG00005021062) #8	CSDC2 (ENSSVLG00005021115) #9	PMM1 (ENSSVLG00005021168) #10	DESI1 (ENSSVLG00005021220) #11	XRCC6 (ENSSVLG00005021287) #12	ENSSVLG00005021427 ##13	MEI1 (ENSSVLG00005021530) #14	CCDC134 (ENSSVLG00005021846) #15	SREBF2 (ENSSVLG00005021885) #16	ENSSVLG00005021918	SHISA8 (ENSSVLG00005021957) #17	TNFRSF13C (ENSSVLG00005021994) #18	CENPM (ENSSVLG00005022024) #19	SMIM45 (ENSSVLG00005022101) #20	SEPTIN3 (ENSSVLG00005003473) #21	WBP2NL (ENSSVLG00005003578) #22	ENSSVLG00005003601	NAGA (ENSSVLG00005003614) #23	PHETA2 (ENSSVLG00005003635) #24	SMDT1 (ENSSVLG00005003647)	NDUFA6 (ENSSVLG00005003661) #25	ENSSVLG00005003686 #27	ENSSVLG00005003721	ENSSVLG00005003890 #27	TCF20 (ENSSVLG00005004152) #32	NFAM1 (ENSSVLG00005004168) #33	SERHL2 (ENSSVLG00005004215)	RRP7A (ENSSVLG00005004268) #35	POLDIP3 (ENSSVLG00005004309) #36	ENSSVLG00005004382 #37	A4GALT (ENSSVLG00005004406)
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896.h #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000002918.a.b #10	ENSGT00940000153331.y.b.a.b #27	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896.h #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Chinese hamster chok1gshd	MODERN SPECIES	1	Pmm1 (ENSCGRG00001021685) #10	ENSCGRG00001018874 #27	Ndufb11b (ENSCGRG00001009944)	Desi1 (ENSCGRG00001018751) #11	Xrcc6 (ENSCGRG00001019029) #12	ENSCGRG00001019169 #13	4930407I10Rik (ENSCGRG00001020277)	Mei1 (ENSCGRG00001018719) #14	Ccdc134 (ENSCGRG00001019080) #15	Srebf2 (ENSCGRG00001023422) #16	Shisa8 (ENSCGRG00001005475) #17	Tnfrsf13c (ENSCGRG00001021023) #18	Cenpm (ENSCGRG00001021402) #19	Smim45 (ENSCGRG00001017767) #20	ENSCGRG00001018092 #21	Wbp2nl (ENSCGRG00001022437) #22	Naga (ENSCGRG00001023285) #23	Pheta2 (ENSCGRG00001009774) #24	Smdt1 (ENSCGRG00001008476)	Ndufa6 (ENSCGRG00001021387) #25	Cyp2d22 (ENSCGRG00001021750) #27	ENSCGRG00001020612 #27	ENSCGRG00001020807 #27	ENSCGRG00001020509 #27	ENSCGRG00001020758 #27	ENSCGRG00001021131 #32	Nfam1 (ENSCGRG00001021390) #33	Serhl (ENSCGRG00001021008)	ENSCGRG00001021873 #35	ENSCGRG00001004211 #36	Cyb5r3 (ENSCGRG00001002853) #37
Golden Hamster	MODERN SPECIES	626	Polr3h (ENSMAUG00000022215) #8	Csdc2 (ENSMAUG00000020821) #9	ENSMAUG00000012267 #27	Desi1 (ENSMAUG00000020204) #11	Xrcc6 (ENSMAUG00000017340) #12	Snu13 (ENSMAUG00000010871) #13	4930407I10Rik (ENSMAUG00000020761)	ENSMAUG00000018190 #14	Ccdc134 (ENSMAUG00000015349) #15	Srebf2 (ENSMAUG00000014667) #16	Shisa8 (ENSMAUG00000011455) #17	Tnfrsf13c (ENSMAUG00000021132) #18	Cenpm (ENSMAUG00000013641) #19	Smim45 (ENSMAUG00000010423) #20	ENSMAUG00000014933 #21	Wbp2nl (ENSMAUG00000021409) #22	ENSMAUG00000021300 #23	Pheta2 (ENSMAUG00000012084) #24	Smdt1 (ENSMAUG00000013006)	ENSMAUG00000016173 #32	Nfam1 (ENSMAUG00000021430) #33	ENSMAUG00000019905 #35	Poldip3 (ENSMAUG00000014002) #36	Cyb5r3 (ENSMAUG00000018937) #37	A4galt (ENSMAUG00000020066)	Arfgap3 (ENSMAUG00000017439)	Pacsin2 (ENSMAUG00000018738)	Ttll1 (ENSMAUG00000006755)	Bik (ENSMAUG00000019844)	Mcat (ENSMAUG00000001870)	Tspo (ENSMAUG00000022011)
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.a.h ##13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000157896.h #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Northern American deer mouse	MODERN SPECIES	12	ENSPEMG00000027260 #27	ENSPEMG00000028310 #27	Ndufb11b (ENSPEMG00000027521)	Desi1 (ENSPEMG00000024515) #11	Xrcc6 (ENSPEMG00000023446) #12	ENSPEMG00000018900 ##13	ENSPEMG00000027230	Mei1 (ENSPEMG00000000470) #14	Ccdc134 (ENSPEMG00000030390) #15	Srebf2 (ENSPEMG00000015944) #16	Shisa8 (ENSPEMG00000020435) #17	Tnfrsf13c (ENSPEMG00000022848) #18	Cenpm (ENSPEMG00000007770) #19	Smim45 (ENSPEMG00000014910) #20	ENSPEMG00000009916 #21	Wbp2nl (ENSPEMG00000030920) #22	Naga (ENSPEMG00000016747) #23	Pheta2 (ENSPEMG00000020356) #24	ENSPEMG00000020633	Ndufa6 (ENSPEMG00000014882) #25	Cyp2d22 (ENSPEMG00000020935) #27	ENSPEMG00000027727 #27	ENSPEMG00000029289 #27	ENSPEMG00000029882 #27	ENSPEMG00000024356 #27	ENSPEMG00000030236 #27	ENSPEMG00000030889 #27	ENSPEMG00000029293 #27	ENSPEMG00000029885 #27	ENSPEMG00000027063 #27	ENSPEMG00000029803 #27
Prairie vole	MODERN SPECIES	2	Aco2 (ENSMOCG00000008387) #7	Polr3h (ENSMOCG00000018747) #8	Csdc2 (ENSMOCG00000017299) #9	Pmm1 (ENSMOCG00000012876) #10	Desi1 (ENSMOCG00000010048) #11	Xrcc6 (ENSMOCG00000015717) #12	4930407I10Rik (ENSMOCG00000013993)	Mei1 (ENSMOCG00000009514) #14	Ccdc134 (ENSMOCG00000005926) #15	Srebf2 (ENSMOCG00000019045) #16	Shisa8 (ENSMOCG00000005566) #17	Tnfrsf13c (ENSMOCG00000016760) #18	Cenpm (ENSMOCG00000011942) #19	Smim45 (ENSMOCG00000007536) #20	ENSMOCG00000015408 #21	Wbp2nl (ENSMOCG00000020224) #22	Naga (ENSMOCG00000002189) #23	Pheta2 (ENSMOCG00000006143) #24	Smdt1 (ENSMOCG00000017726)	Ndufa6 (ENSMOCG00000014629) #25	Cyp2d22 (ENSMOCG00000012735) #27	ENSMOCG00000011450 #27	ENSMOCG00000015222 #27	Cyp2d40 (ENSMOCG00000019528) #27	ENSMOCG00000003545 #27	ENSMOCG00000001543 #27	ENSMOCG00000019326 #32	Nfam1 (ENSMOCG00000015515) #33	Poldip3 (ENSMOCG00000014101) #36	Cyb5r3 (ENSMOCG00000007336) #37	A4galt (ENSMOCG00000001881)
Murinae	ANCESTRAL SPECIES	10	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Mus	ANCESTRAL SPECIES	11	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.b.a.b.a.a #27	ENSGT00940000153331.y.b.a.b.a.b #27	ENSGT00940000153331.y.a #27	ENSGT00940000153331.z #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b.a.a.a #27	ENSGT00940000153331.y.b.a.b.a.a.b #27	ENSGT00940000153331.y.b.a.b.a.b #27	ENSGT00940000153331.z #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00390000003022.t	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.a #27	ENSGT00940000153331.y.b.a.b.a.a.a #27	ENSGT00940000153331.y.b.a.b.a.a.b.a.b #27	ENSGT00940000153331.y.b.a.b.a.b.a #27	ENSGT00940000153331.z #27	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960
Mouse	MODERN SPECIES	6	Csdc2 (ENSMUSG00000042109) #9	Pmm1 (ENSMUSG00000022474) #10	Ndufb11b (ENSMUSG00000061633)	Xrcc6 (ENSMUSG00000022471) #12	Desi1 (ENSMUSG00000022472) #11	Snu13 (ENSMUSG00000063480) #13	4930407I10Rik (ENSMUSG00000075524)	Mei1 (ENSMUSG00000068117) #14	Ccdc134 (ENSMUSG00000068114) #15	Srebf2 (ENSMUSG00000022463) #16	Shisa8 (ENSMUSG00000096883) #17	Tnfrsf13c (ENSMUSG00000068105) #18	Cenpm (ENSMUSG00000068101) #19	Smim45 (ENSMUSG00000068099) #20	Septin3 (ENSMUSG00000022456) #21	Wbp2nl (ENSMUSG00000022455) #22	Naga (ENSMUSG00000022453) #23	Pheta2 (ENSMUSG00000049687) #24	Smdt1 (ENSMUSG00000022452)	Ndufa6 (ENSMUSG00000022450) #25	Cyp2d22 (ENSMUSG00000061740) #27	Cyp2d11 (ENSMUSG00000068085) #27	Cyp2d10 (ENSMUSG00000094806) #27	Cyp2d9 (ENSMUSG00000068086) #27	Cyp2d12 (ENSMUSG00000096852) #27	Cyp2d34 (ENSMUSG00000094559) #27	Cyp2d13 (ENSMUSG00000118516) #27	Cyp2d40 (ENSMUSG00000068083) #27	Cyp2d26 (ENSMUSG00000022445) #27	Tcf20 (ENSMUSG00000041852) #32	Nfam1 (ENSMUSG00000058099) #33
Mus_C	ANCESTRAL SPECIES	17	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.y.b.b #27	ENSGT00940000153331.y.b.a.a.a.a #27	ENSGT00940000157896.e #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Steppe mouse	MODERN SPECIES	2020													ENSMSIG00000009015	Smim45 (ENSMSIG00000009027) #20	Septin3 (ENSMSIG00000009051) #21	Wbp2nl (ENSMSIG00000009083) #22	Naga (ENSMSIG00000009104) #23	Pheta2 (ENSMSIG00000009128) #24	Smdt1 (ENSMSIG00000009140)	ENSMSIG00000009160	Cyp2d22 (ENSMSIG00000009164) #27
spretus	MODERN SPECIES	6	Polr3h (MGP_SPRETEiJ_G0020964) #8	Csdc2 (MGP_SPRETEiJ_G0020965) #9	Pmm1 (MGP_SPRETEiJ_G0020966) #10	Xrcc6 (MGP_SPRETEiJ_G0020967) #12	Desi1 (MGP_SPRETEiJ_G0020968) #11	MGP_SPRETEiJ_G0020969	4930407I10Rik (MGP_SPRETEiJ_G0020970)	Mei1 (MGP_SPRETEiJ_G0020971) #14	Ccdc134 (MGP_SPRETEiJ_G0020972) #15	Srebf2 (MGP_SPRETEiJ_G0020973) #16	Shisa8 (MGP_SPRETEiJ_G0020974) #17	Tnfrsf13c (MGP_SPRETEiJ_G0020975) #18	Cenpm (MGP_SPRETEiJ_G0020976) #19	Smim45 (MGP_SPRETEiJ_G0020977) #20	MGP_SPRETEiJ_G0020978 #21	Wbp2nl (MGP_SPRETEiJ_G0020979) #22	Naga (MGP_SPRETEiJ_G0020980) #23	Pheta2 (MGP_SPRETEiJ_G0020981) #24	Smdt1 (MGP_SPRETEiJ_G0020982)	Ndufa6 (MGP_SPRETEiJ_G0020983) #25	Cyp2d22 (MGP_SPRETEiJ_G0020984) #27	Cyp2d26 (MGP_SPRETEiJ_G0020985) #27	MGP_SPRETEiJ_G0020986 #27	Tcf20 (MGP_SPRETEiJ_G0020987) #32	Nfam1 (MGP_SPRETEiJ_G0020988) #33	Serhl (MGP_SPRETEiJ_G0020989)	Rrp7a (MGP_SPRETEiJ_G0020990) #35	Poldip3 (MGP_SPRETEiJ_G0020991) #36	Cyb5r3 (MGP_SPRETEiJ_G0020992) #37	A4galt (MGP_SPRETEiJ_G0020993)	Arfgap3 (MGP_SPRETEiJ_G0020994)
Ryukyu mouse	MODERN SPECIES	6	Csdc2 (MGP_CAROLIEiJ_G0020064) #9	Pmm1 (MGP_CAROLIEiJ_G0020065) #10	Ndufb11b (MGP_CAROLIEiJ_G0020066)	Xrcc6 (MGP_CAROLIEiJ_G0020067) #12	Desi1 (MGP_CAROLIEiJ_G0020068) #11	Snu13 (MGP_CAROLIEiJ_G0020069) #13	4930407I10Rik (MGP_CAROLIEiJ_G0020070)	Mei1 (MGP_CAROLIEiJ_G0020071) #14	Ccdc134 (MGP_CAROLIEiJ_G0020072) #15	Srebf2 (MGP_CAROLIEiJ_G0020073) #16	Shisa8 (MGP_CAROLIEiJ_G0020074) #17	Tnfrsf13c (MGP_CAROLIEiJ_G0020075) #18	Cenpm (MGP_CAROLIEiJ_G0020076) #19	Smim45 (MGP_CAROLIEiJ_G0020077) #20	MGP_CAROLIEiJ_G0020078 #21	Wbp2nl (MGP_CAROLIEiJ_G0020079) #22	Naga (MGP_CAROLIEiJ_G0020080) #23	Pheta2 (MGP_CAROLIEiJ_G0020081) #24	Smdt1 (MGP_CAROLIEiJ_G0020082)	Ndufa6 (MGP_CAROLIEiJ_G0020083) #25	Cyp2d22 (MGP_CAROLIEiJ_G0020084) #27	Cyp2d11 (MGP_CAROLIEiJ_G0020085) #27	MGP_CAROLIEiJ_G0020086 #27	MGP_CAROLIEiJ_G0020087 #27	MGP_CAROLIEiJ_G0020088 #27	Tcf20 (MGP_CAROLIEiJ_G0020089) #32	Nfam1 (MGP_CAROLIEiJ_G0020090) #33	Serhl (MGP_CAROLIEiJ_G0020091)	Rrp7a (MGP_CAROLIEiJ_G0020092) #35	Poldip3 (MGP_CAROLIEiJ_G0020093) #36	MGP_CAROLIEiJ_G0020094 #37
Shrew mouse	MODERN SPECIES	8	Csdc2 (MGP_PahariEiJ_G0020066) #9	Pmm1 (MGP_PahariEiJ_G0020067) #10	Ndufb11b (MGP_PahariEiJ_G0020068)	Xrcc6 (MGP_PahariEiJ_G0020069) #12	Desi1 (MGP_PahariEiJ_G0020070) #11	MGP_PahariEiJ_G0020071	4930407I10Rik (MGP_PahariEiJ_G0020072)	Mei1 (MGP_PahariEiJ_G0020073) #14	Ccdc134 (MGP_PahariEiJ_G0020074) #15	Srebf2 (MGP_PahariEiJ_G0020075) #16	Shisa8 (MGP_PahariEiJ_G0020076) #17	MGP_PahariEiJ_G0020077 #18	Cenpm (MGP_PahariEiJ_G0020078) #19	Smim45 (MGP_PahariEiJ_G0020079) #20	MGP_PahariEiJ_G0020080 #21	Wbp2nl (MGP_PahariEiJ_G0020081) #22	Naga (MGP_PahariEiJ_G0020082) #23	Pheta2 (MGP_PahariEiJ_G0020083) #24	Smdt1 (MGP_PahariEiJ_G0020084)	Ndufa6 (MGP_PahariEiJ_G0020085) #25	MGP_PahariEiJ_G0020086 #27	Cyp2d22 (MGP_PahariEiJ_G0020087) #27	MGP_PahariEiJ_G0020088 #27	MGP_PahariEiJ_G0020089 #27	MGP_PahariEiJ_G0020090 #27	MGP_PahariEiJ_G0020091 #27	MGP_PahariEiJ_G0020092 #27	MGP_PahariEiJ_G0020093 #27	MGP_PahariEiJ_G0020094 #27	Cyp2d26 (MGP_PahariEiJ_G0020095) #27	Tcf20 (MGP_PahariEiJ_G0020096) #32
Rat	MODERN SPECIES	17	Csdc2 (ENSRNOG00000005332) #9	Pmm1 (ENSRNOG00000005358) #10	RGD1306782 (ENSRNOG00000005572)	Desi1 (ENSRNOG00000005577) #11	Xrcc6 (ENSRNOG00000006392) #12	Snu13 (ENSRNOG00000006762) #13	LOC100362109 (ENSRNOG00000030150)	Mei1 (ENSRNOG00000007003) #14	Ccdc134 (ENSRNOG00000007262) #15	Srebf2 (ENSRNOG00000007400) #16	Shisa8 (ENSRNOG00000049407) #17	Tnfrsf13c (ENSRNOG00000007664) #18	Cenpm (ENSRNOG00000023262) #19	Smim45 (ENSRNOG00000043197) #20	Septin3 (ENSRNOG00000007686) #21	Wbp2nl (ENSRNOG00000008038) #22	Naga (ENSRNOG00000008064) #23	Pheta2 (ENSRNOG00000042522) #24	Smdt1 (ENSRNOG00000070907)	Ndufa6 (ENSRNOG00000008569) #25	Cyp2d4 (ENSRNOG00000032261) #27	Cyp2d5 (ENSRNOG00000029128) #27	Cyp2d3 (ENSRNOG00000029179) #27	Cyp2d2 (ENSRNOG00000008988) #27	Tcf20 (ENSRNOG00000009585) #32	Nfam1 (ENSRNOG00000022975) #33	Serhl2 (ENSRNOG00000022932)	Rrp7a (ENSRNOG00000022896) #35	Poldip3 (ENSRNOG00000022877) #36	Cyb5r3 (ENSRNOG00000009592) #37	AABR07058366.1 (ENSRNOG00000025046)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1277	Polr3h (ENSNGAG00000015009) #8	Csdc2 (ENSNGAG00000011207) #9	Pmm1 (ENSNGAG00000019009) #10	Desi1 (ENSNGAG00000015435) #11	Xrcc6 (ENSNGAG00000013750) #12	Snu13 (ENSNGAG00000012960) #13	ENSNGAG00000020669	Mei1 (ENSNGAG00000020170) #14	Ccdc134 (ENSNGAG00000016417) #15	Srebf2 (ENSNGAG00000002154) #16	Shisa8 (ENSNGAG00000016429) #17	Tnfrsf13c (ENSNGAG00000020357) #18	Cenpm (ENSNGAG00000020088) #19	Smim45 (ENSNGAG00000016609) #20	ENSNGAG00000020671 #21	Wbp2nl (ENSNGAG00000001470) #22	Naga (ENSNGAG00000003704) #23	Pheta2 (ENSNGAG00000020894) #24	Smdt1 (ENSNGAG00000020665)	Ndufa6 (ENSNGAG00000009851) #25	Cyp2d22 (ENSNGAG00000020195) #27	ENSNGAG00000000577 #27	ENSNGAG00000015048 #27	ENSNGAG00000000143 #27	ENSNGAG00000012213 #27	ENSNGAG00000019982 #27	Cyp2d26 (ENSNGAG00000019264) #27	ENSNGAG00000017213 #32	ENSNGAG00000010915 #33	Serhl (ENSNGAG00000000560)	Rrp7a (ENSNGAG00000010039) #35
Kangaroo rat	MODERN SPECIES	398	Tob2 (ENSDORG00000002204)	Phf5a (ENSDORG00000002205)	Aco2 (ENSDORG00000002209) #7	Polr3h (ENSDORG00000002215) #8	Csdc2 (ENSDORG00000024736) #9	Pmm1 (ENSDORG00000011755) #10	Desi1 (ENSDORG00000011407) #11	Xrcc6 (ENSDORG00000009101) #12	Snu13 (ENSDORG00000027409) #13	ENSDORG00000029855 #14	Ccdc134 (ENSDORG00000000689) #15	Srebf2 (ENSDORG00000000691) #16	ENSDORG00000028498 #17	Cenpm (ENSDORG00000011954) #19	ENSDORG00000014056 #21	Wbp2nl (ENSDORG00000026174) #22	Naga (ENSDORG00000008736) #23	Pheta2 (ENSDORG00000024472) #24	Smdt1 (ENSDORG00000008734)	Ndufa6 (ENSDORG00000008733) #25	ENSDORG00000001647 #27	ENSDORG00000002430 #27	ENSDORG00000006508 #27	ENSDORG00000028779 #27	ENSDORG00000026270 #32	Rrp7a (ENSDORG00000016138) #35	Poldip3 (ENSDORG00000006590) #36	A4galt (ENSDORG00000015599)	ENSDORG00000027695	Pacsin2 (ENSDORG00000004122)	Ttll1 (ENSDORG00000004194)
Lagomorpha	ANCESTRAL SPECIES	76	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.`b.b #27	ENSGT00940000157896 #32	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Rabbit	MODERN SPECIES	467	ACO2 (ENSOCUG00000021368) #7	POLR3H (ENSOCUG00000007275) #8	CSDC2 (ENSOCUG00000006938) #9	PMM1 (ENSOCUG00000006941) #10	ENSOCUG00000011875 #11	XRCC6 (ENSOCUG00000006948) #12	SNU13 (ENSOCUG00000023785) #13	MEI1 (ENSOCUG00000013337) #14	CCDC134 (ENSOCUG00000013355) #15	SREBF2 (ENSOCUG00000003178) #16	ENSOCUG00000013186 #18	ENSOCUG00000008255 #19	SMIM45 (ENSOCUG00000035037) #20	ENSOCUG00000035445	ENSOCUG00000008260 #21	ENSOCUG00000004417 #22	NAGA (ENSOCUG00000006739) #23	PHETA2 (ENSOCUG00000001305) #24	ENSOCUG00000001303	NDUFA6 (ENSOCUG00000015446) #25	ENSOCUG00000026356 #27	ENSOCUG00000027693 #27	ENSOCUG00000011988 #27	ENSOCUG00000028043 #27	TCF20 (ENSOCUG00000010285) #32	ENSOCUG00000002177	RRP7A (ENSOCUG00000027434) #35	POLDIP3 (ENSOCUG00000016133) #36	CYB5R3 (ENSOCUG00000014248) #37	A4GALT (ENSOCUG00000006673)	ENSOCUG00000001967
Tree shrew	MODERN SPECIES	5925															ENSTBEG00000000385 #21	ENSTBEG00000000397 #22
Primates	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Simiiformes	ANCESTRAL SPECIES	27	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00910000147647	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Catarrhini	ANCESTRAL SPECIES	22	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00910000147647	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Cercopithecidae	ANCESTRAL SPECIES	24	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00910000147647	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Cercopithecinae	ANCESTRAL SPECIES	21	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Cercopithecinae_a	ANCESTRAL SPECIES	20	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898.`b.a #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960.k.b	ENSGT00390000018482 #35	ENSGT00530000063960.k.a	ENSGT00530000063960.l	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Macaca	ANCESTRAL SPECIES	20	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898.`b.a #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960.k.b	ENSGT00390000018482 #35	ENSGT00530000063960.k.a	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Macaca_a	ANCESTRAL SPECIES	20	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898.`b.a #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960.k.b	ENSGT00390000018482 #35	ENSGT00530000063960.l	ENSGT00940000167653	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Crab-eating macaque	MODERN SPECIES	1	CSDC2 (ENSMFAG00000060068) #9	PMM1 (ENSMFAG00000034090) #10	ENSMFAG00000007408	ENSMFAG00000034617	ENSMFAG00000056431	XRCC6 (ENSMFAG00000003352) #12	SNU13 (ENSMFAG00000031096) #13	MEI1 (ENSMFAG00000035767) #14	CCDC134 (ENSMFAG00000031727) #15	SREBF2 (ENSMFAG00000043421) #16	SHISA8 (ENSMFAG00000050220) #17	TNFRSF13C (ENSMFAG00000048896) #18	CENPM (ENSMFAG00000042414) #19	SMIM45 (ENSMFAG00000064531) #20	ENSMFAG00000039306 #21	WBP2NL (ENSMFAG00000034650) #22	NAGA (ENSMFAG00000002492) #23	PHETA2 (ENSMFAG00000057151) #24	SMDT1 (ENSMFAG00000044573)	NDUFA6 (ENSMFAG00000039783) #25	ENSMFAG00000053847	ENSMFAG00000049698	CYP2D8 (ENSMFAG00000042506) #27	ENSMFAG00000065042	ENSMFAG00000051540	TCF20 (ENSMFAG00000003509) #32	NFAM1 (ENSMFAG00000065792) #33	ENSMFAG00000020523	RRP7A (ENSMFAG00000058776) #35	ENSMFAG00000053373	ENSMFAG00000033348
Rhesus	MODERN SPECIES	1	CSDC2 (ENSMMUG00000062477) #9	PMM1 (ENSMMUG00000001853) #10	DESI1 (ENSMMUG00000050219) #11	XRCC6 (ENSMMUG00000001856) #12	SNU13 (ENSMMUG00000042546) #13	ENSMMUG00000007290	MEI1 (ENSMMUG00000031012) #14	CCDC134 (ENSMMUG00000011531) #15	SREBF2 (ENSMMUG00000003357) #16	SHISA8 (ENSMMUG00000015101) #17	TNFRSF13C (ENSMMUG00000052011) #18	CENPM (ENSMMUG00000003360) #19	ENSMMUG00000064392 #20	ENSMMUG00000064409	SEPTIN3 (ENSMMUG00000015139) #21	WBP2NL (ENSMMUG00000031011) #22	NAGA (ENSMMUG00000000005) #23	PHETA2 (ENSMMUG00000013062) #24	SMDT1 (ENSMMUG00000013061)	NDUFA6 (ENSMMUG00000013060) #25	CYP2D6 (ENSMMUG00000017962) #27	ENSMMUG00000002654 #27	TCF20 (ENSMMUG00000002656) #32	NFAM1 (ENSMMUG00000053793) #33	ENSMMUG00000052616	RRP7A (ENSMMUG00000009716) #35	ENSMMUG00000051087	ENSMMUG00000049928	POLDIP3 (ENSMMUG00000047046) #36	A4GALT (ENSMMUG00000010194)	CYB5R3 (ENSMMUG00000010198) #37
Pig-tailed macaque	MODERN SPECIES	329	POLR3H (ENSMNEG00000022264) #8	CSDC2 (ENSMNEG00000027703) #9	PMM1 (ENSMNEG00000021815) #10	DESI1 (ENSMNEG00000030194) #11	XRCC6 (ENSMNEG00000035076) #12	ENSMNEG00000033195 ##13	ENSMNEG00000045462	MEI1 (ENSMNEG00000032013) #14	CCDC134 (ENSMNEG00000040902) #15	SREBF2 (ENSMNEG00000041251) #16	SHISA8 (ENSMNEG00000032491) #17	TNFRSF13C (ENSMNEG00000043183) #18	CENPM (ENSMNEG00000045162) #19	SMIM45 (ENSMNEG00000014211) #20	ENSMNEG00000038786 #21	WBP2NL (ENSMNEG00000032711) #22	NAGA (ENSMNEG00000034440) #23	SMDT1 (ENSMNEG00000038492)	ENSMNEG00000033937 #25	CYP2D6 (ENSMNEG00000037279) #27	ENSMNEG00000041782 #27	TCF20 (ENSMNEG00000042128) #32	NFAM1 (ENSMNEG00000036025) #33	RRP7A (ENSMNEG00000033705) #35	SERHL2 (ENSMNEG00000030210)	POLDIP3 (ENSMNEG00000037068) #36	CYB5R3 (ENSMNEG00000034801) #37	A4GALT (ENSMNEG00000022402)	ARFGAP3 (ENSMNEG00000031892)	PACSIN2 (ENSMNEG00000033515)	TTLL1 (ENSMNEG00000043299)
Cercopithecinae_b	ANCESTRAL SPECIES	22	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898.`b.a #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960.l	ENSGT00940000167653	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Olive baboon	MODERN SPECIES	7	TTLL12 (ENSPANG00000025191)	TSPO (ENSPANG00000010770)	MCAT (ENSPANG00000009929)	BIK (ENSPANG00000009992)	TTLL1 (ENSPANG00000008687)	ENSPANG00000040410	PACSIN2 (ENSPANG00000007159)	ARFGAP3 (ENSPANG00000003890)	A4GALT (ENSPANG00000014007)	CYB5R3 (ENSPANG00000008688) #37	POLDIP3 (ENSPANG00000007026) #36	ENSPANG00000043435	ENSPANG00000039560	NFAM1 (ENSPANG00000008689) #33	ENSPANG00000009994 #21	WBP2NL (ENSPANG00000008690) #22	NAGA (ENSPANG00000005137) #23	PHETA2 (ENSPANG00000050664) #24	SMDT1 (ENSPANG00000034206)	NDUFA6 (ENSPANG00000006974) #25	CYP2D6 (ENSPANG00000024403) #27	CYP2D8P1 (ENSPANG00000032096) #27	TCF20 (ENSPANG00000023578) #32	ENSPANG00000047532	SMIM45 (ENSPANG00000031812) #20	CENPM (ENSPANG00000013693) #19	TNFRSF13C (ENSPANG00000022555) #18	ENSPANG00000000730 #17	SREBF2 (ENSPANG00000008691) #16	CCDC134 (ENSPANG00000013694) #15	MEI1 (ENSPANG00000005138) #14
Cercopithecinae_d	ANCESTRAL SPECIES	17	ENSGT00940000154892.f #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00390000017489	ENSGT00390000018898.`b.a #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33
Sooty mangabey	MODERN SPECIES	103	ACO2 (ENSCATG00000030437) #7	POLR3H (ENSCATG00000018316) #8	CSDC2 (ENSCATG00000035356) #9	PMM1 (ENSCATG00000041928) #10	DESI1 (ENSCATG00000000926) #11	XRCC6 (ENSCATG00000042366) #12	SNU13 (ENSCATG00000038628) #13	MEI1 (ENSCATG00000039577) #14	CCDC134 (ENSCATG00000040974) #15	SREBF2 (ENSCATG00000036837) #16	SHISA8 (ENSCATG00000045183) #17	TNFRSF13C (ENSCATG00000021445) #18	CENPM (ENSCATG00000029981) #19	SMIM45 (ENSCATG00000021505) #20	ENSCATG00000045173 #21	WBP2NL (ENSCATG00000041021) #22	NAGA (ENSCATG00000029348) #23	SMDT1 (ENSCATG00000013128)	ENSCATG00000033405 #25	CYP2D6 (ENSCATG00000008129) #27	ENSCATG00000036769 #27	TCF20 (ENSCATG00000030568) #32	NFAM1 (ENSCATG00000028319) #33
Vervet Monkey	MODERN SPECIES	10	POLR3H (ENSCSAG00000005798) #8	CSDC2 (ENSCSAG00000005794) #9	PMM1 (ENSCSAG00000005792) #10	DESI1 (ENSCSAG00000005787) #11	XRCC6 (ENSCSAG00000005784) #12	SNU13 (ENSCSAG00000005776) #13	ENSCSAG00000005774	MEI1 (ENSCSAG00000005763) #14	CCDC134 (ENSCSAG00000005737) #15	SREBF2 (ENSCSAG00000005734) #16	ENSCSAG00000005730 #17	TNFRSF13C (ENSCSAG00000005729) #18	CENPM (ENSCSAG00000005725) #19	ENSCSAG00000005722 #21	ENSCSAG00000005718	WBP2NL (ENSCSAG00000005713) #22	NAGA (ENSCSAG00000005710) #23	PHETA2 (ENSCSAG00000019284) #24	SMDT1 (ENSCSAG00000005706)	NDUFA6 (ENSCSAG00000005702) #25	CYP2D6 (ENSCSAG00000005692) #27	CYP2D8 (ENSCSAG00000005679) #27	TCF20 (ENSCSAG00000005671) #32	NFAM1 (ENSCSAG00000005669) #33	ENSCSAG00000005663	ENSCSAG00000005661	RRP7A (ENSCSAG00000005657) #35	POLDIP3 (ENSCSAG00000005654) #36	CYB5R3 (ENSCSAG00000005649) #37	A4GALT (ENSCSAG00000019285)	ARFGAP3 (ENSCSAG00000005636)
Rhinopithecus	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b.f #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00910000147647	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.fb #27	ENSGT00940000153331.gb #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167653	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Black snub-nosed monkey	MODERN SPECIES	1173						SNU13 (ENSRBIG00000024209) #13	MEI1 (ENSRBIG00000027183) #14	CCDC134 (ENSRBIG00000043604) #15	SREBF2 (ENSRBIG00000028114) #16	SHISA8 (ENSRBIG00000034366) #17	TNFRSF13C (ENSRBIG00000008606) #18	CENPM (ENSRBIG00000029805) #19	SMIM45 (ENSRBIG00000007518) #20	ENSRBIG00000040851 #21	ENSRBIG00000036113	WBP2NL (ENSRBIG00000030205) #22	NAGA (ENSRBIG00000026499) #23	SMDT1 (ENSRBIG00000038541)	NDUFA6 (ENSRBIG00000042951) #25	CYP2D6 (ENSRBIG00000042552) #27	ENSRBIG00000042740 #27	TCF20 (ENSRBIG00000044369) #32	NFAM1 (ENSRBIG00000006653) #33	ENSRBIG00000031796	RRP7A (ENSRBIG00000040358) #35	POLDIP3 (ENSRBIG00000041676) #36	CYB5R3 (ENSRBIG00000033327) #37
Golden snub-nosed monkey	MODERN SPECIES	575	POLR3H (ENSRROG00000033728) #8	CSDC2 (ENSRROG00000042848) #9	PMM1 (ENSRROG00000027395) #10	DESI1 (ENSRROG00000039283) #11	ENSRROG00000030297 #12	SNU13 (ENSRROG00000042542) #13	MEI1 (ENSRROG00000043986) #14	CCDC134 (ENSRROG00000030513) #15	SREBF2 (ENSRROG00000032435) #16	ENSRROG00000043046 #17	TNFRSF13C (ENSRROG00000042222) #18	CENPM (ENSRROG00000015719) #19	SMIM45 (ENSRROG00000024066) #20	ENSRROG00000042957	ENSRROG00000042463 #21	WBP2NL (ENSRROG00000041190) #22	NAGA (ENSRROG00000007058) #23	SMDT1 (ENSRROG00000036691)	NDUFA6 (ENSRROG00000031451) #25	ENSRROG00000013355 #27	ENSRROG00000032928 #27	TCF20 (ENSRROG00000042245) #32	NFAM1 (ENSRROG00000045753) #33	SERHL2 (ENSRROG00000001711)	RRP7A (ENSRROG00000036754) #35	POLDIP3 (ENSRROG00000022379) #36	ENSRROG00000038126	CYB5R3 (ENSRROG00000034538) #37	A4GALT (ENSRROG00000024966)	ARFGAP3 (ENSRROG00000040392)	PACSIN2 (ENSRROG00000034339)
Hominoidea	ANCESTRAL SPECIES	22	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.db #27	ENSGT00940000153331.eb.b #27	ENSGT00940000153331.eb.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Hominidae	ANCESTRAL SPECIES	21	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.db #27	ENSGT00940000153331.eb.b #27	ENSGT00940000153331.eb.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	21	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100.g #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.db #27	ENSGT00940000153331.eb.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Homo/Pan group	ANCESTRAL SPECIES	20	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100.g #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.db #27	ENSGT00940000153331.eb.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Pan	ANCESTRAL SPECIES	23	ENSGT00940000154892.f #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100.g #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00390000000673.b.a.b	ENSGT00940000153331.eb.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Chimpanzee	MODERN SPECIES	13	ACO2 (ENSPTRG00000014428) #7	POLR3H (ENSPTRG00000051865) #8	CSDC2 (ENSPTRG00000044110) #9	PMM1 (ENSPTRG00000014432) #10	DESI1 (ENSPTRG00000014433) #11	XRCC6 (ENSPTRG00000022548) #12	SNU13 (ENSPTRG00000014435) #13	ENSPTRG00000041505	MEI1 (ENSPTRG00000014436) #14	CCDC134 (ENSPTRG00000014438) #15	SREBF2 (ENSPTRG00000014439) #16	SHISA8 (ENSPTRG00000039404) #17	TNFRSF13C (ENSPTRG00000014441) #18	CENPM (ENSPTRG00000014442) #19	SEPTIN3 (ENSPTRG00000014444) #21	WBP2NL (ENSPTRG00000022684) #22	NAGA (ENSPTRG00000014446) #23	PHETA2 (ENSPTRG00000049204) #24	SMDT1 (ENSPTRG00000014448)	NDUFA6 (ENSPTRG00000014449) #25	ENSPTRG00000048207	CYP2D6 (ENSPTRG00000042031) #27	ENSPTRG00000051591 #27	TCF20 (ENSPTRG00000014452) #32	NFAM1 (ENSPTRG00000043593) #33	ENSPTRG00000047863	ENSPTRG00000033935 #35	ENSPTRG00000014456	POLDIP3 (ENSPTRG00000014460) #36	CYB5R3 (ENSPTRG00000014461) #37	A4GALT (ENSPTRG00000029414)
Bonobo	MODERN SPECIES	13	PHF5A (ENSPPAG00000008422)	ACO2 (ENSPPAG00000019653) #7	POLR3H (ENSPPAG00000031000) #8	CSDC2 (ENSPPAG00000032112) #9	PMM1 (ENSPPAG00000034355) #10	DESI1 (ENSPPAG00000035138) #11	XRCC6 (ENSPPAG00000037167) #12	SNU13 (ENSPPAG00000026299) #13	ENSPPAG00000028172	MEI1 (ENSPPAG00000029081) #14	CCDC134 (ENSPPAG00000031113) #15	SREBF2 (ENSPPAG00000032656) #16	ENSPPAG00000036533 #18	CENPM (ENSPPAG00000037196) #19	ENSPPAG00000013116 #21	WBP2NL (ENSPPAG00000038703) #22	ENSPPAG00000040953	NAGA (ENSPPAG00000034278) #23	PHETA2 (ENSPPAG00000000902) #24	SMDT1 (ENSPPAG00000036299)	NDUFA6 (ENSPPAG00000037220) #25	ENSPPAG00000037463	ENSPPAG00000036828 #27	TCF20 (ENSPPAG00000032271) #32	NFAM1 (ENSPPAG00000022085) #33	SERHL2 (ENSPPAG00000037657)	ENSPPAG00000029825 #35	POLDIP3 (ENSPPAG00000036619) #36	CYB5R3 (ENSPPAG00000033956) #37	A4GALT (ENSPPAG00000007549)	ENSPPAG00000040595
Human	MODERN SPECIES	14	PHF5A (ENSG00000100410)	POLR3H (ENSG00000100413) #8	CSDC2 (ENSG00000172346) #9	PMM1 (ENSG00000100417) #10	DESI1 (ENSG00000100418) #11	XRCC6 (ENSG00000196419) #12	SNU13 (ENSG00000100138) #13	MEI1 (ENSG00000167077) #14	CCDC134 (ENSG00000100147) #15	SREBF2 (ENSG00000198911) #16	SHISA8 (ENSG00000234965) #17	TNFRSF13C (ENSG00000159958) #18	CENPM (ENSG00000100162) #19	SMIM45 (ENSG00000205704) #20	SEPTIN3 (ENSG00000100167) #21	WBP2NL (ENSG00000183066) #22	NAGA (ENSG00000198951) #23	PHETA2 (ENSG00000177096) #24	SMDT1 (ENSG00000183172)	NDUFA6 (ENSG00000184983) #25	CYP2D6 (ENSG00000100197) #27	TCF20 (ENSG00000100207) #32	NFAM1 (ENSG00000235568) #33	RRP7A (ENSG00000189306) #35	SERHL2 (ENSG00000183569)	POLDIP3 (ENSG00000100227) #36	CYB5R3 (ENSG00000100243) #37	ATP5MGL (ENSG00000249222)	A4GALT (ENSG00000128274)	ARFGAP3 (ENSG00000242247)	PACSIN2 (ENSG00000100266)
Gorilla	MODERN SPECIES	13	PHF5A (ENSGGOG00000001104)	ACO2 (ENSGGOG00000001107) #7	POLR3H (ENSGGOG00000038191) #8	CSDC2 (ENSGGOG00000037916) #9	PMM1 (ENSGGOG00000025969) #10	DESI1 (ENSGGOG00000015877) #11	XRCC6 (ENSGGOG00000015885) #12	SNU13 (ENSGGOG00000015898) #13	MEI1 (ENSGGOG00000004400) #14	CCDC134 (ENSGGOG00000012055) #15	SREBF2 (ENSGGOG00000012065) #16	ENSGGOG00000036616 #17	TNFRSF13C (ENSGGOG00000012089) #18	SMIM45 (ENSGGOG00000037729) #20	ENSGGOG00000008961 #21	WBP2NL (ENSGGOG00000034969) #22	NAGA (ENSGGOG00000007889) #23	PHETA2 (ENSGGOG00000037366) #24	SMDT1 (ENSGGOG00000007903)	NDUFA6 (ENSGGOG00000007905) #25	ENSGGOG00000005816	ENSGGOG00000000459 #27	TCF20 (ENSGGOG00000000461) #32	NFAM1 (ENSGGOG00000042468) #33	RRP7A (ENSGGOG00000014957) #35	ENSGGOG00000021985	POLDIP3 (ENSGGOG00000014961) #36	CYB5R3 (ENSGGOG00000005448) #37	A4GALT (ENSGGOG00000009352)	ARFGAP3 (ENSGGOG00000014512)	PACSIN2 (ENSGGOG00000016309)
Gibbon	MODERN SPECIES	22	POLR3H (ENSNLEG00000015536) #8	ENSNLEG00000015551 #9	PMM1 (ENSNLEG00000015555) #10	DESI1 (ENSNLEG00000015592) #11	XRCC6 (ENSNLEG00000015610) #12	SNU13 (ENSNLEG00000027284) #13	ENSNLEG00000030585	MEI1 (ENSNLEG00000015634) #14	CCDC134 (ENSNLEG00000015642) #15	SREBF2 (ENSNLEG00000015650) #16	ENSNLEG00000027977 #17	TNFRSF13C (ENSNLEG00000015666) #18	CENPM (ENSNLEG00000015669) #19	SMIM45 (ENSNLEG00000029114) #20	ENSNLEG00000015691 #21	WBP2NL (ENSNLEG00000015747) #22	NAGA (ENSNLEG00000015762) #23	PHETA2 (ENSNLEG00000015809) #24	SMDT1 (ENSNLEG00000015811)	NDUFA6 (ENSNLEG00000015817) #25	ENSNLEG00000015824	CYP2D6 (ENSNLEG00000015828) #27	ENSNLEG00000035080 #27	ENSNLEG00000034081 #27	ENSNLEG00000031275 #32	NFAM1 (ENSNLEG00000015893) #33	ENSNLEG00000015900	RRP7A (ENSNLEG00000036258) #35	POLDIP3 (ENSNLEG00000015950) #36	ENSNLEG00000032590 #37	ARFGAP3 (ENSNLEG00000016018)
Platyrrhini	ANCESTRAL SPECIES	30	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724.a #20	ENSGT00910000147647	ENSGT00420000030724.b #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.hb #27	ENSGT00940000153331.ib #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A.c.a #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Cebidae	ANCESTRAL SPECIES	31	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.a.a.b #12	ENSGT00940000153239.B.j.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724.a #20	ENSGT00910000147647	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.hb #27	ENSGT00940000153331.ib #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A.c.a #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Marmoset	MODERN SPECIES		ATF4 (ENSCJAG00000002594)	MIEF1 (ENSCJAG00000002588)	CSDC2 (ENSCJAG00000085773) #9	PMM1 (ENSCJAG00000002559) #10	DESI1 (ENSCJAG00000018941) #11	ENSCJAG00000045512 #12	SNU13 (ENSCJAG00000070172) #13	MEI1 (ENSCJAG00000002425) #14	CCDC134 (ENSCJAG00000002415) #15	SREBF2 (ENSCJAG00000002378) #16	SHISA8 (ENSCJAG00000014945) #17	TNFRSF13C (ENSCJAG00000002372) #18	CENPM (ENSCJAG00000002359) #19	SMIM45 (ENSCJAG00000044184) #20	SEPTIN3 (ENSCJAG00000043636) #21	WBP2NL (ENSCJAG00000002344) #22	NAGA (ENSCJAG00000002338) #23	PHETA2 (ENSCJAG00000002334) #24	SMDT1 (ENSCJAG00000002333)	NDUFA6 (ENSCJAG00000074627) #25	ENSCJAG00000033546	CYP2D19 (ENSCJAG00000002321) #27	ENSCJAG00000037046 #27	TCF20 (ENSCJAG00000002308) #32	ENSCJAG00000006644 #33	ENSCJAG00000084345	SERHL2 (ENSCJAG00000081818)	RRP7A (ENSCJAG00000009668) #35	POLDIP3 (ENSCJAG00000009628) #36	CYB5R3 (ENSCJAG00000009596) #37	A4GALT (ENSCJAG00000022137)
Cebidae_a	ANCESTRAL SPECIES	40	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.j.a.a.b #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724.a #20	ENSGT00910000147647	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00390000017489	ENSGT00390000018898.y #25	ENSGT00940000153331.hb #27	ENSGT00940000153331.ib #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A.c.a #36
Bolivian squirrel monkey	MODERN SPECIES	94	POLR3H (ENSSBOG00000020652) #8	CSDC2 (ENSSBOG00000035590) #9	PMM1 (ENSSBOG00000035346) #10	DESI1 (ENSSBOG00000023969) #11	ENSSBOG00000024724 #12	ENSSBOG00000024134 ##13	MEI1 (ENSSBOG00000026823) #14	CCDC134 (ENSSBOG00000030156) #15	SREBF2 (ENSSBOG00000032953) #16	SHISA8 (ENSSBOG00000031370) #17	TNFRSF13C (ENSSBOG00000030226) #18	CENPM (ENSSBOG00000031289) #19	SMIM45 (ENSSBOG00000018953) #20	ENSSBOG00000034678	ENSSBOG00000024825 #21	ENSSBOG00000029774 #22	NAGA (ENSSBOG00000019954) #23	SMDT1 (ENSSBOG00000031212)	ENSSBOG00000021327 #25	CYP2D6 (ENSSBOG00000028747) #27	TCF20 (ENSSBOG00000003000) #32	NFAM1 (ENSSBOG00000032935) #33	SERHL2 (ENSSBOG00000026990)	RRP7A (ENSSBOG00000009234) #35	ENSSBOG00000021779 #36	ENSSBOG00000033266	ACR (ENSSBOG00000027884)	SHANK3 (ENSSBOG00000012932)	ARSA (ENSSBOG00000025351)	MAPK8IP2 (ENSSBOG00000028182)	CHKB (ENSSBOG00000015516)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	435	ACO2 (ENSCCAG00000028378) #7	POLR3H (ENSCCAG00000025802) #8	CSDC2 (ENSCCAG00000029849) #9	PMM1 (ENSCCAG00000034441) #10	DESI1 (ENSCCAG00000037020) #11	ENSCCAG00000030468 #12	ENSCCAG00000031213 #13	MEI1 (ENSCCAG00000033076) #14	CCDC134 (ENSCCAG00000019608) #15	SREBF2 (ENSCCAG00000025566) #16	SHISA8 (ENSCCAG00000029382) #17	TNFRSF13C (ENSCCAG00000036813) #18	CENPM (ENSCCAG00000032494) #19	SMIM45 (ENSCCAG00000005363) #20	ENSCCAG00000022439 #21	ENSCCAG00000037760 #22	NAGA (ENSCCAG00000037174) #23	SMDT1 (ENSCCAG00000024549)	ENSCCAG00000036946 #25	CYP2D6 (ENSCCAG00000020990) #27	CYP2D8 (ENSCCAG00000034203) #27	TCF20 (ENSCCAG00000027829) #32	NFAM1 (ENSCCAG00000026337) #33	SERHL2 (ENSCCAG00000023420)	RRP7A (ENSCCAG00000021486) #35	ENSCCAG00000027969 #36
Capuchin	MODERN SPECIES	19															ADAMTS7 (ENSCCAG00000036763)	ENSCCAG00000028535 #22	NGRN (ENSCCAG00000030018)	TTLL13 (ENSCCAG00000021482)	CIB1 (ENSCCAG00000014836)	SEMA4B (ENSCCAG00000024539)	IDH2 (ENSCCAG00000024978)	ZNF710 (ENSCCAG00000029250)	ARPIN (ENSCCAG00000022649)	ANPEP (ENSCCAG00000030317)	MESP2 (ENSCCAG00000011316)	MESP1 (ENSCCAG00000025283)	WDR93 (ENSCCAG00000032328)	PEX11A (ENSCCAG00000036277)	PLIN1 (ENSCCAG00000035870)	KIF7 (ENSCCAG00000033647)	ENSCCAG00000025798
Mas night monkey	MODERN SPECIES	1154	PMM1 (ENSANAG00000027683) #10	DESI1 (ENSANAG00000033964) #11	XRCC6 (ENSANAG00000018684) #12	SNU13 (ENSANAG00000023772) #13	MEI1 (ENSANAG00000030252) #14	CCDC134 (ENSANAG00000030858) #15	ENSANAG00000031745	SREBF2 (ENSANAG00000027763) #16	SHISA8 (ENSANAG00000030774) #17	TNFRSF13C (ENSANAG00000022162) #18	ENSANAG00000031331	CENPM (ENSANAG00000032170) #19	ENSANAG00000020496 #20	ENSANAG00000031290 #20	ENSANAG00000019445 #21	WBP2NL (ENSANAG00000029029) #22	NAGA (ENSANAG00000027293) #23
Tarsier	MODERN SPECIES	5125							ZNF25 (ENSTSYG00000028490)	SNU13 (ENSTSYG00000014063) #13	MEI1 (ENSTSYG00000012678) #14	CCDC134 (ENSTSYG00000001466) #15	SREBF2 (ENSTSYG00000002907) #16	TNFRSF13C (ENSTSYG00000032477) #18	CENPM (ENSTSYG00000003519) #19	SMIM45 (ENSTSYG00000030865) #20	SEPT3 (ENSTSYG00000012514) #21	WBP2NL (ENSTSYG00000004668) #22	NAGA (ENSTSYG00000034969) #23	SMDT1 (ENSTSYG00000004862)	NDUFA6 (ENSTSYG00000004861) #25	CYP2D78 (ENSTSYG00000035294) #27	CYP2D77 (ENSTSYG00000037427) #27	ENSTSYG00000002597 #27	CYP2D73 (ENSTSYG00000033282) #27	CYP2D68 (ENSTSYG00000030254) #27	TCF20 (ENSTSYG00000032616) #32	NFAM1 (ENSTSYG00000037563) #33
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898.w #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Mouse lemur	MODERN SPECIES	29	PMM1 (ENSMICG00000005983) #10	DESI1 (ENSMICG00000045578) #11	XRCC6 (ENSMICG00000005993) #12	ENSMICG00000007014	SNU13 (ENSMICG00000013557) #13	ENSMICG00000045689	MEI1 (ENSMICG00000000892) #14	ENSMICG00000030643	CCDC134 (ENSMICG00000000910) #15	SREBF2 (ENSMICG00000000913) #16	SHISA8 (ENSMICG00000042512) #17	TNFRSF13C (ENSMICG00000027267) #18	CENPM (ENSMICG00000032243) #19	SMIM45 (ENSMICG00000035029) #20	ENSMICG00000003589 #21	WBP2NL (ENSMICG00000047786) #22	ENSMICG00000033559	NAGA (ENSMICG00000012620) #23	SMDT1 (ENSMICG00000029867)	NDUFA6 (ENSMICG00000012633) #25	ENSMICG00000044058 #27	CYP2D93 (ENSMICG00000047495) #27	CYP2D8 (ENSMICG00000027310) #27	TCF20 (ENSMICG00000012650) #32	NFAM1 (ENSMICG00000047110) #33	SERHL2 (ENSMICG00000000839)	RRP7A (ENSMICG00000041800) #35	POLDIP3 (ENSMICG00000041767) #36	CYB5R3 (ENSMICG00000006571) #37	TTLL12 (ENSMICG00000013571)	TSPO (ENSMICG00000003660)
Lemuriformes_a	ANCESTRAL SPECIES	38	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898.w #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Coquerels sifaka	MODERN SPECIES	131	ACO2 (ENSPCOG00000017488) #7	POLR3H (ENSPCOG00000013751) #8	CSDC2 (ENSPCOG00000024484) #9	ENSPCOG00000020073 #10	DESI1 (ENSPCOG00000026824) #11	XRCC6 (ENSPCOG00000027338) #12	ENSPCOG00000025033 #13	MEI1 (ENSPCOG00000015175) #14	CCDC134 (ENSPCOG00000025774) #15	SREBF2 (ENSPCOG00000023461) #16	SHISA8 (ENSPCOG00000026922) #17	TNFRSF13C (ENSPCOG00000025422) #18	CENPM (ENSPCOG00000014847) #19	SMIM45 (ENSPCOG00000003245) #20	ENSPCOG00000024794 #21	ENSPCOG00000012300 #22	NAGA (ENSPCOG00000028087) #23	SMDT1 (ENSPCOG00000028742)	ENSPCOG00000028700 #25	ENSPCOG00000028795 #27	TCF20 (ENSPCOG00000022152) #32	NFAM1 (ENSPCOG00000018178) #33	SERHL2 (ENSPCOG00000020237)	RRP7A (ENSPCOG00000014018) #35	POLDIP3 (ENSPCOG00000020271) #36	CYB5R3 (ENSPCOG00000020961) #37	ARFGAP3 (ENSPCOG00000028873)	ENSPCOG00000013651	PACSIN2 (ENSPCOG00000024814)	TTLL1 (ENSPCOG00000019799)	BIK (ENSPCOG00000019271)
Greater bamboo lemur	MODERN SPECIES	231	ACO2 (ENSPSMG00000001419) #7	POLR3H (ENSPSMG00000001287) #8	CSDC2 (ENSPSMG00000001223) #9	PMM1 (ENSPSMG00000001200) #10	DESI1 (ENSPSMG00000001171) #11	XRCC6 (ENSPSMG00000000818) #12	SNU13 (ENSPSMG00000000630) #13	MEI1 (ENSPSMG00000000596) #14	CCDC134 (ENSPSMG00000000532) #15	SREBF2 (ENSPSMG00000000460) #16	SHISA8 (ENSPSMG00000000361) #17	TNFRSF13C (ENSPSMG00000000354) #18	CENPM (ENSPSMG00000000339) #19	SMIM45 (ENSPSMG00000000287) #20	SEPTIN3 (ENSPSMG00000000252) #21	WBP2NL (ENSPSMG00000000073) #22	NAGA (ENSPSMG00000000056) #23	PHETA2 (ENSPSMG00000000031) #24	SMDT1 (ENSPSMG00000025869)	NDUFA6 (ENSPSMG00000025868) #25	ENSPSMG00000025867 #27
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Cetacea	ANCESTRAL SPECIES	8	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.m #12	ENSGT00550000074840.y.b.k #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00510000046986.x.b.b.b.b	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.m #12	ENSGT00550000074840.y.b.k #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00510000046986.x.b.b.b.b	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.m #12	ENSGT00550000074840.y.b.k #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00510000046986.x.b.b.b.b	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.m #12	ENSGT00550000074840.y.b.k #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00510000046986.x.b.b.b.b	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B.m #12	ENSGT00550000074840.y.b.k #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00510000046986.x.b.b.b.b	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Beluga whale	MODERN SPECIES	111	POLR3H (ENSDLEG00000016302) #8	CSDC2 (ENSDLEG00000016311) #9	PMM1 (ENSDLEG00000016320) #10	DESI1 (ENSDLEG00000016339) #11	ENSDLEG00000016354	ENSDLEG00000016391 #12	SNU13 (ENSDLEG00000016619) #13	MEI1 (ENSDLEG00000016651) #14	ENSDLEG00000016945	SREBF2 (ENSDLEG00000016960) #16	SHISA8 (ENSDLEG00000016987) #17	TNFRSF13C (ENSDLEG00000016994) #18	ENSDLEG00000017022	SMIM45 (ENSDLEG00000017037) #20	ENSDLEG00000017044 #21	WBP2NL (ENSDLEG00000017060) #22	ENSDLEG00000017069	NAGA (ENSDLEG00000017073) #23	PHETA2 (ENSDLEG00000017087) #24	ENSDLEG00000017096	NDUFA6 (ENSDLEG00000017111) #25	ENSDLEG00000017118 #26	CYP2D6 (ENSDLEG00000017138) #27	TCF20 (ENSDLEG00000017236) #32	NFAM1 (ENSDLEG00000017261) #33	ENSDLEG00000017278	RRP7A (ENSDLEG00000017301) #35	POLDIP3 (ENSDLEG00000017333) #36	CYB5R3 (ENSDLEG00000017391) #37	A4GALT (ENSDLEG00000017417)	ARFGAP3 (ENSDLEG00000017425)
Narwhal	MODERN SPECIES	313	POLR3H (ENSMMNG00015018103) #8	CSDC2 (ENSMMNG00015018146) #9	PMM1 (ENSMMNG00015018177) #10	DESI1 (ENSMMNG00015018207) #11	ENSMMNG00015018237 #12	ENSMMNG00015018285	SNU13 (ENSMMNG00015018317) #13	MEI1 (ENSMMNG00015018390) #14	CCDC134 (ENSMMNG00015018478) #15	SREBF2 (ENSMMNG00015018518) #16	SHISA8 (ENSMMNG00015018579) #17	TNFRSF13C (ENSMMNG00015018599) #18	CENPM (ENSMMNG00015018648) #19	SMIM45 (ENSMMNG00015018673) #20	SEPTIN3 (ENSMMNG00015018733) #21	WBP2NL (ENSMMNG00015018901) #22	ENSMMNG00015018950	NAGA (ENSMMNG00015018971) #23	PHETA2 (ENSMMNG00015018993) #24	SMDT1 (ENSMMNG00015018999)	NDUFA6 (ENSMMNG00015019020) #25	ENSMMNG00015019043 #26	CYP2D6 (ENSMMNG00015019074) #27	TCF20 (ENSMMNG00015019116) #32	NFAM1 (ENSMMNG00015019143) #33	SERHL2 (ENSMMNG00015019169)	RRP7A (ENSMMNG00015019206) #35	POLDIP3 (ENSMMNG00015019228) #36	CYB5R3 (ENSMMNG00015019310) #37	A4GALT (ENSMMNG00015019341)	ARFGAP3 (ENSMMNG00015019372)
Vaquita	MODERN SPECIES	1	ACO2 (ENSPSNG00000006999) #7	POLR3H (ENSPSNG00000006925) #8	CSDC2 (ENSPSNG00000006894) #9	PMM1 (ENSPSNG00000006869) #10	DESI1 (ENSPSNG00000006766) #11	ENSPSNG00000006727 #12	SNU13 (ENSPSNG00000006667) #13	MEI1 (ENSPSNG00000006612) #14	CCDC134 (ENSPSNG00000006568) #15	SREBF2 (ENSPSNG00000006495) #16	SHISA8 (ENSPSNG00000006462) #17	TNFRSF13C (ENSPSNG00000006405) #18	CENPM (ENSPSNG00000006337) #19	SMIM45 (ENSPSNG00000006298) #20	SEPTIN3 (ENSPSNG00000006102) #21	WBP2NL (ENSPSNG00000006022) #22	ENSPSNG00000005982	NAGA (ENSPSNG00000005931) #23	PHETA2 (ENSPSNG00000005897) #24	SMDT1 (ENSPSNG00000005880)	NDUFA6 (ENSPSNG00000005840) #25	ENSPSNG00000005817 #26	CYP2D6 (ENSPSNG00000005100) #27	TCF20 (ENSPSNG00000004785) #32	NFAM1 (ENSPSNG00000004737) #33	SERHL2 (ENSPSNG00000004679)	RRP7A (ENSPSNG00000004651) #35	POLDIP3 (ENSPSNG00000004603) #36	ENSPSNG00000004550 #37	A4GALT (ENSPSNG00000004512)	ARFGAP3 (ENSPSNG00000004464)
Dolphin	MODERN SPECIES	2694												SREBF2 (ENSTTRG00000017350) #16	TNFRSF13C (ENSTTRG00000017353) #18	CENPM (ENSTTRG00000017354) #19	SEPT3 (ENSTTRG00000017358) #21	ENSTTRG00000017359 #22	NAGA (ENSTTRG00000017362) #23	PHETA2 (ENSTTRG00000017367) #24	SMDT1 (ENSTTRG00000017368)	NDUFA6 (ENSTTRG00000017371) #25
Sperm whale	MODERN SPECIES	17	RTL6 (ENSPCTG00005000811)	PARVG (ENSPCTG00005000781)	SAMM50 (ENSPCTG00005000758)	PNPLA3 (ENSPCTG00005000734)	SULT4A1 (ENSPCTG00005000711)	EFCAB6 (ENSPCTG00005000660)	MPPED1 (ENSPCTG00005000617)	SCUBE1 (ENSPCTG00005000579)	TTLL12 (ENSPCTG00005000551)	ENSPCTG00005000536	TTLL1 (ENSPCTG00005000492)	ARFGAP3 (ENSPCTG00005000424)	TCF20 (ENSPCTG00005000372) #32	CYP2D6 (ENSPCTG00005000313) #27	POLDIP3 (ENSPCTG00005000280) #36	ENSPCTG00005000244 #22	ENSPCTG00005000228	SMIM45 (ENSPCTG00005000215) #20	CENPM (ENSPCTG00005012915) #19	SREBF2 (ENSPCTG00005012672) #16	ENSPCTG00005012634 #14	ENSPCTG00005012612	ENSPCTG00005012517 #13	ENSPCTG00005012209 #12	DESI1 (ENSPCTG00005012146) #11	PMM1 (ENSPCTG00005012103) #10	CSDC2 (ENSPCTG00005012068) #9	ENSPCTG00005012046 #8	PHF5A (ENSPCTG00005012016)	ENSPCTG00005011975	EP300 (ENSPCTG00005011871)
Blue whale	MODERN SPECIES	1	POLR3H (ENSBMSG00010014040) #8	ENSBMSG00010014114	CSDC2 (ENSBMSG00010014140) #9	PMM1 (ENSBMSG00010014166) #10	DESI1 (ENSBMSG00010014206) #11	ENSBMSG00010014265 #12	ENSBMSG00010014449 #13	MEI1 (ENSBMSG00010014550) #14	CCDC134 (ENSBMSG00010014735) #15	SREBF2 (ENSBMSG00010014793) #16	SHISA8 (ENSBMSG00010014932) #17	TNFRSF13C (ENSBMSG00010014956) #18	CENPM (ENSBMSG00010014993) #19	SMIM45 (ENSBMSG00010015039) #20	SEPTIN3 (ENSBMSG00010015107) #21	WBP2NL (ENSBMSG00010015557) #22	ENSBMSG00010015604	NAGA (ENSBMSG00010015635) #23	PHETA2 (ENSBMSG00010015663) #24	SMDT1 (ENSBMSG00010015681)	ENSBMSG00010015702 #25	CYP2D6 (ENSBMSG00010015752) #27	TCF20 (ENSBMSG00010015833) #32	NFAM1 (ENSBMSG00010015882) #33	SERHL2 (ENSBMSG00010015957)	RRP7A (ENSBMSG00010016005) #35	POLDIP3 (ENSBMSG00010016041) #36	CYB5R3 (ENSBMSG00010016101) #37	ENSBMSG00010016156	ARFGAP3 (ENSBMSG00010016182)	PACSIN2 (ENSBMSG00010016230)
Pecora	ANCESTRAL SPECIES	3	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Yarkand deer	MODERN SPECIES	14	POLR3H (ENSCHYG00000022721) #8	CSDC2 (ENSCHYG00000022821) #9	PMM1 (ENSCHYG00000022842) #10	DESI1 (ENSCHYG00000022886) #11	XRCC6 (ENSCHYG00000022928) #12	SNU13 (ENSCHYG00000023097) #13	ENSCHYG00000023150	MEI1 (ENSCHYG00000023169) #14	CCDC134 (ENSCHYG00000023225) #15	SREBF2 (ENSCHYG00000023277) #16	SHISA8 (ENSCHYG00000023421) #17	TNFRSF13C (ENSCHYG00000023442) #18	CENPM (ENSCHYG00000023485) #19	ENSCHYG00000023626 #20	SEPTIN3 (ENSCHYG00000023685) #21	ENSCHYG00000023904 #22	NAGA (ENSCHYG00000023946) #23	PHETA2 (ENSCHYG00000024027) #24	SMDT1 (ENSCHYG00000024078)	NDUFA6 (ENSCHYG00000024109) #25	ENSCHYG00000024144	TCF20 (ENSCHYG00000024164) #32	NFAM1 (ENSCHYG00000024240) #33	SERHL2 (ENSCHYG00000024298)	RRP7A (ENSCHYG00000024457) #35	POLDIP3 (ENSCHYG00000024515) #36	CYB5R3 (ENSCHYG00000024741) #37	A4GALT (ENSCHYG00000024795)	ARFGAP3 (ENSCHYG00000024824)	PACSIN2 (ENSCHYG00000024962)	ENSCHYG00000025015
Percora_a	ANCESTRAL SPECIES	3	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Bovidae	ANCESTRAL SPECIES	3	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.ub.b.a #27	ENSGT00940000153331.ub.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Bovinae	ANCESTRAL SPECIES	10	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100.d #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764.a.a #26	ENSGT00500000045764.a.b.a #26	ENSGT00940000153331.ub.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Bos	ANCESTRAL SPECIES	2	ENSGT00390000002918.a.b #10	ENSGT00730000111100.d #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT01100000263480.a.a.b.b.b.b.a.b.b	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764.a.a #26	ENSGT00940000153331.ub.b.a #27	ENSGT00500000045764.a.b.a #26	ENSGT00940000153331.ub.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Bos_a	ANCESTRAL SPECIES	24	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.b.a.a.a.b	ENSGT00730000111100.d #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT01100000263480.a.a.b.b.b.b.a.b.b	ENSGT00420000030724 #20	ENSGT00960000192472	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764.b #26	ENSGT00940000153331.ub.b.a #27	ENSGT00500000045764.a.b.a #26	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Domestic yak	MODERN SPECIES	24	ENSBGRG00000008726 #11	DESI1 (ENSBGRG00000008734) #11	XRCC6 (ENSBGRG00000008781) #12	SNU13 (ENSBGRG00000009006) #13	ENSBGRG00000009110	MEI1 (ENSBGRG00000009152) #14	CCDC134 (ENSBGRG00000009488) #15	SREBF2 (ENSBGRG00000009606) #16	SHISA8 (ENSBGRG00000009867) #17	ENSBGRG00000009945 #18	CENPM (ENSBGRG00000009971) #19	ENSBGRG00000010122	SMIM45 (ENSBGRG00000010150) #20	ENSBGRG00000010178	ENSBGRG00000010196 #21	WBP2NL (ENSBGRG00000010352) #22	NAGA (ENSBGRG00000010420) #23	PHETA2 (ENSBGRG00000010652) #24	SMDT1 (ENSBGRG00000010698)	NDUFA6 (ENSBGRG00000010730) #25	ENSBGRG00000010810 #26	CYP2D6 (ENSBGRG00000010949) #27	ENSBGRG00000011273 #26	ENSBGRG00000011415 #26	TCF20 (ENSBGRG00000011570) #32	ENSBGRG00000011862 #33	SERHL2 (ENSBGRG00000012024)	RRP7A (ENSBGRG00000012277) #35	POLDIP3 (ENSBGRG00000012521) #36	ENSBGRG00000012803 #37	A4GALT (ENSBGRG00000013056)
Bos_b	ANCESTRAL SPECIES	30	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100.d #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT01100000263480.a.a.b.b.b.b.a.b.b	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764.a.a #26	ENSGT00940000153331.ub.b.a #27	ENSGT00500000045764.a.b.a #26	ENSGT00940000153331.ub.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c
Cow	MODERN SPECIES	24	POLR3H (ENSBTAG00000005311) #8	CSDC2 (ENSBTAG00000004004) #9	PMM1 (ENSBTAG00000004009) #10	DESI1 (ENSBTAG00000047942) #11	XRCC6 (ENSBTAG00000006103) #12	SNU13 (ENSBTAG00000006104) #13	ENSBTAG00000047629	MEI1 (ENSBTAG00000004488) #14	CCDC134 (ENSBTAG00000021173) #15	SREBF2 (ENSBTAG00000014265) #16	SHISA8 (ENSBTAG00000051879) #17	TNFRSF13C (ENSBTAG00000026489) #18	CENPM (ENSBTAG00000009956) #19	SMIM45 (ENSBTAG00000050336) #20	SEPTIN3 (ENSBTAG00000013173) #21	WBP2NL (ENSBTAG00000013174) #22	NAGA (ENSBTAG00000009506) #23	PHETA2 (ENSBTAG00000009507) #24	SMDT1 (ENSBTAG00000009508)	NDUFA6 (ENSBTAG00000009509) #25	ENSBTAG00000038146 #26	CYP2D43 (ENSBTAG00000026501) #27	ENSBTAG00000037632 #26	CYP2D14 (ENSBTAG00000026502) #27	TCF20 (ENSBTAG00000000662) #32	NFAM1 (ENSBTAG00000005018) #33	SERHL2 (ENSBTAG00000016507)	RRP7 (ENSBTAG00000016510) #35	POLDIP3 (ENSBTAG00000016511) #36	CYB5R3 (ENSBTAG00000016516) #37	A4GALT (ENSBTAG00000026497)
Hybrid Bos Indicus	MODERN SPECIES	24	PMM1 (ENSBIXG00005030190) #10	ENSBIXG00005030184	DESI1 (ENSBIXG00005030174) #11	XRCC6 (ENSBIXG00005030124) #12	SNU13 (ENSBIXG00005030086) #13	ENSBIXG00005030078	MEI1 (ENSBIXG00005030034) #14	CCDC134 (ENSBIXG00005030005) #15	SREBF2 (ENSBIXG00005029968) #16	SHISA8 (ENSBIXG00005029949) #17	TNFRSF13C (ENSBIXG00005029923) #18	CENPM (ENSBIXG00005029911) #19	ENSBIXG00005029901	SMIM45 (ENSBIXG00005029896) #20	SEPTIN3 (ENSBIXG00005029864) #21	WBP2NL (ENSBIXG00005029846) #22	NAGA (ENSBIXG00005029828) #23	PHETA2 (ENSBIXG00005029790) #24	NDUFA6 (ENSBIXG00005029777) #25	ENSBIXG00005029773 #26	ENSBIXG00005029763 #26	CYP2D6 (ENSBIXG00005029641) #27	TCF20 (ENSBIXG00005029571) #32	NFAM1 (ENSBIXG00005029538) #33	SERHL2 (ENSBIXG00005029505)	RRP7A (ENSBIXG00005029494) #35	POLDIP3 (ENSBIXG00005029477) #36	CYB5R3 (ENSBIXG00005029451) #37	A4GALT (ENSBIXG00005029430)	ENSBIXG00005029425	ARFGAP3 (ENSBIXG00005029410)
American bison	MODERN SPECIES	3105			TTC29 (ENSBBBG00000000621)	POU4F2 (ENSBBBG00000000614)	SLC10A7 (ENSBBBG00000000540)	REELD1 (ENSBBBG00000000520)	ENSBBBG00000000514	ZNF827 (ENSBBBG00000020586)	C4orf51 (ENSBBBG00000020596)	MMAA (ENSBBBG00000005563)	SMAD1 (ENSBBBG00000020659)	SREBF2 (ENSBBBG00000005596) #16	CENPM (ENSBBBG00000020787) #19	SMIM45 (ENSBBBG00000020793) #20	SEPTIN3 (ENSBBBG00000020899) #21	WBP2NL (ENSBBBG00000020924) #22	NAGA (ENSBBBG00000020936) #23	PHETA2 (ENSBBBG00000020942) #24	SMDT1 (ENSBBBG00000005631)	NDUFA6 (ENSBBBG00000020956) #25	ENSBBBG00000005638 #26	ENSBBBG00000021001 #27	ENSBBBG00000005645 #32	NFAM1 (ENSBBBG00000021019) #33	SERHL2 (ENSBBBG00000021075)	RRP7A (ENSBBBG00000021090) #35	POLDIP3 (ENSBBBG00000021128) #36	CYB5R3 (ENSBBBG00000021158) #37	A4GALT (ENSBBBG00000021164)	ARFGAP3 (ENSBBBG00000021203)	ENSBBBG00000006917
Caprinae	ANCESTRAL SPECIES		ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.ub.b.a #27	ENSGT00940000153331.ub.a.c #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466
Goat	MODERN SPECIES	24	CSDC2 (ENSCHIG00000021658) #9	PMM1 (ENSCHIG00000006787) #10	DESI1 (ENSCHIG00000017498) #11	XRCC6 (ENSCHIG00000012853) #12	ENSCHIG00000015834 #13	ENSCHIG00000017103	MEI1 (ENSCHIG00000014057) #14	CCDC134 (ENSCHIG00000008926) #15	ENSCHIG00000023993	SREBF2 (ENSCHIG00000020010) #16	SHISA8 (ENSCHIG00000014119) #17	TNFRSF13C (ENSCHIG00000016982) #18	CENPM (ENSCHIG00000011481) #19	SMIM45 (ENSCHIG00000008353) #20	ENSCHIG00000016257 #21	WBP2NL (ENSCHIG00000015876) #22	NAGA (ENSCHIG00000026860) #23	PHETA2 (ENSCHIG00000006843) #24	SMDT1 (ENSCHIG00000020634)	NDUFA6 (ENSCHIG00000013801) #25	ENSCHIG00000016163 #26	CYP2D43 (ENSCHIG00000017340) #27	CYP2D6 (ENSCHIG00000012914) #27	TCF20 (ENSCHIG00000018238) #32	NFAM1 (ENSCHIG00000013754) #33	SERHL2 (ENSCHIG00000016037)	RRP7A (ENSCHIG00000026787) #35	POLDIP3 (ENSCHIG00000020171) #36	ENSCHIG00000009613 #37	A4GALT (ENSCHIG00000023291)	ARFGAP3 (ENSCHIG00000022666)
Rambouillet Sheep	MODERN SPECIES	19	POLR3H (ENSOARG00020024546) #8	CSDC2 (ENSOARG00020024566) #9	PMM1 (ENSOARG00020024579) #10	DESI1 (ENSOARG00020024591) #11	ENSOARG00020024613 #12	ENSOARG00020024631 #13	ENSOARG00020024666	MEI1 (ENSOARG00020024711) #14	CCDC134 (ENSOARG00020024805) #15	SREBF2 (ENSOARG00020024824) #16	SHISA8 (ENSOARG00020024872) #17	TNFRSF13C (ENSOARG00020024884) #18	CENPM (ENSOARG00020024901) #19	SMIM45 (ENSOARG00020024917) #20	ENSOARG00020000167 #21	WBP2NL (ENSOARG00020000252) #22	NAGA (ENSOARG00020000276) #23	PHETA2 (ENSOARG00020000294) #24	SMDT1 (ENSOARG00020000309)	NDUFA6 (ENSOARG00020000319) #25	ENSOARG00020000342 #26	ENSOARG00020000379 #27	CYP2D6 (ENSOARG00020000491) #27	ENSOARG00020000579 #27	ENSOARG00020000601 #27	ENSOARG00020000633 #27	TCF20 (ENSOARG00020000658) #32	SERHL2 (ENSOARG00020000733)	RRP7A (ENSOARG00020000772) #35	POLDIP3 (ENSOARG00020000803) #36	CYB5R3 (ENSOARG00020000828) #37
Siberian musk deer	MODERN SPECIES	1247	POLR3H (ENSMMSG00000013540) #8	CSDC2 (ENSMMSG00000013524) #9	PMM1 (ENSMMSG00000013501) #10	DESI1 (ENSMMSG00000013489) #11	XRCC6 (ENSMMSG00000013395) #12	SNU13 (ENSMMSG00000024016) #13	ENSMMSG00000024007	MEI1 (ENSMMSG00000023993) #14	CCDC134 (ENSMMSG00000023987) #15	SREBF2 (ENSMMSG00000023975) #16	SHISA8 (ENSMMSG00000023969) #17	TNFRSF13C (ENSMMSG00000023964) #18	CENPM (ENSMMSG00000023955) #19	SMIM45 (ENSMMSG00000023952) #20	SEPTIN3 (ENSMMSG00000023945) #21	WBP2NL (ENSMMSG00000023938) #22	NAGA (ENSMMSG00000023930) #23	PHETA2 (ENSMMSG00000023924) #24	SMDT1 (ENSMMSG00000023921)	NDUFA6 (ENSMMSG00000023914) #25
Camelidae	ANCESTRAL SPECIES	28	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Alpaca	MODERN SPECIES	2351																WBP2NL (ENSVPAG00000010634) #22
Arabian camel	MODERN SPECIES	3	PHF5A (ENSCDRG00005017267)	ACO2 (ENSCDRG00005017299) #7	POLR3H (ENSCDRG00005017372) #8	CSDC2 (ENSCDRG00005017436) #9	PMM1 (ENSCDRG00005017476) #10	DESI1 (ENSCDRG00005017505) #11	XRCC6 (ENSCDRG00005003310) #12	SNU13 (ENSCDRG00005003357) #13	MEI1 (ENSCDRG00005003416) #14	CCDC134 (ENSCDRG00005003531) #15	SREBF2 (ENSCDRG00005003590) #16	TNFRSF13C (ENSCDRG00005003774) #18	CENPM (ENSCDRG00005003836) #19	ENSCDRG00005003942 #20	SEPTIN3 (ENSCDRG00005003987) #21	WBP2NL (ENSCDRG00005004277) #22	NAGA (ENSCDRG00005004327) #23	PHETA2 (ENSCDRG00005004362) #24	SMDT1 (ENSCDRG00005004376)	NDUFA6 (ENSCDRG00005004391) #25	ENSCDRG00005004425 #26	CYP2D6 (ENSCDRG00005004461) #27	TCF20 (ENSCDRG00005004496) #32	NFAM1 (ENSCDRG00005004559) #33	SERHL2 (ENSCDRG00005004617)	RRP7A (ENSCDRG00005004747) #35	POLDIP3 (ENSCDRG00005004801) #36	ENSCDRG00005004877 #37	A4GALT (ENSCDRG00005005078)	ARFGAP3 (ENSCDRG00005005102)	PACSIN2 (ENSCDRG00005005173)
Suina	ANCESTRAL SPECIES	21	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Pig	MODERN SPECIES	13	POLR3H (ENSSSCG00000000063) #8	CSDC2 (ENSSSCG00000000062) #9	PMM1 (ENSSSCG00000000061) #10	DESI1 (ENSSSCG00000034265) #11	XRCC6 (ENSSSCG00000000059) #12	SNU13 (ENSSSCG00000000058) #13	ENSSSCG00000057322	MEI1 (ENSSSCG00000034405) #14	CCDC134 (ENSSSCG00000035565) #15	SREBF2 (ENSSSCG00000026092) #16	SHISA8 (ENSSSCG00000035755) #17	TNFRSF13C (ENSSSCG00000039074) #18	CENPM (ENSSSCG00000035991) #19	SMIM45 (ENSSSCG00000057743) #20	SEPTIN3 (ENSSSCG00000000040) #21	ENSSSCG00000062925 #22	PHETA2 (ENSSSCG00000038492) #24	NAGA (ENSSSCG00000000050) #23	SMDT1 (ENSSSCG00000020945)	NDUFA6 (ENSSSCG00000000045) #25	CYP2D6 (ENSSSCG00000000046) #27	TCF20 (ENSSSCG00000032171) #32	NFAM1 (ENSSSCG00000037425) #33	SERHL2 (ENSSSCG00000034350)	RRP7A (ENSSSCG00000033983) #35	POLDIP3 (ENSSSCG00000000039) #36	CYB5R3 (ENSSSCG00000000038) #37	A4GALT (ENSSSCG00000026962)	ARFGAP3 (ENSSSCG00000000037)	PACSIN2 (ENSSSCG00000000036)	TTLL1 (ENSSSCG00000000035)
Chacoan peccary	MODERN SPECIES	871	ACO2 (ENSCWAG00000012041) #7	POLR3H (ENSCWAG00000011965) #8	CSDC2 (ENSCWAG00000011932) #9	PMM1 (ENSCWAG00000011902) #10	DESI1 (ENSCWAG00000011787) #11	XRCC6 (ENSCWAG00000011601) #12	SNU13 (ENSCWAG00000011528) #13	MEI1 (ENSCWAG00000011137) #14	CCDC134 (ENSCWAG00000011088) #15	SREBF2 (ENSCWAG00000011027) #16	SHISA8 (ENSCWAG00000019272) #17	TNFRSF13C (ENSCWAG00000019192) #18	CENPM (ENSCWAG00000019140) #19	SMIM45 (ENSCWAG00000019128) #20	SEPTIN3 (ENSCWAG00000018779) #21	WBP2NL (ENSCWAG00000018697) #22	PHETA2 (ENSCWAG00000018670) #24	NAGA (ENSCWAG00000018641) #23	SMDT1 (ENSCWAG00000018626)	ENSCWAG00000018592 #25	CYP2D6 (ENSCWAG00000018484) #27	TCF20 (ENSCWAG00000018440) #32	NFAM1 (ENSCWAG00000018399) #33	SERHL2 (ENSCWAG00000018279)	RRP7A (ENSCWAG00000018248) #35	POLDIP3 (ENSCWAG00000018163) #36	CYB5R3 (ENSCWAG00000018067) #37	A4GALT (ENSCWAG00000018052)	ARFGAP3 (ENSCWAG00000017978)	PACSIN2 (ENSCWAG00000017889)	TTLL1 (ENSCWAG00000017849)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Carnivora	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Caniformia	ANCESTRAL SPECIES	20	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004.b #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466.h	ENSGT00950000182973.a.c.b
Ursus	ANCESTRAL SPECIES	64	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004.b #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466.h	ENSGT00950000182973.a.c.b
American black bear	MODERN SPECIES	6577															ENSUAMG00000010595 #21	WBP2NL (ENSUAMG00000010592) #22
Polar bear	MODERN SPECIES	248	PHF5A (ENSUMAG00000021030)	ACO2 (ENSUMAG00000021024) #7	POLR3H (ENSUMAG00000021018) #8	CSDC2 (ENSUMAG00000021015) #9	PMM1 (ENSUMAG00000021010) #10	DESI1 (ENSUMAG00000021006) #11	XRCC6 (ENSUMAG00000021004) #12	SNU13 (ENSUMAG00000021000) #13	ENSUMAG00000020998	MEI1 (ENSUMAG00000020981) #14	CCDC134 (ENSUMAG00000020966) #15	SREBF2 (ENSUMAG00000020699) #16	CENPM (ENSUMAG00000020662) #19	SMIM45 (ENSUMAG00000020657) #20	SEPTIN3 (ENSUMAG00000020618) #21	ENSUMAG00000020596 #22	NAGA (ENSUMAG00000020591) #23	PHETA2 (ENSUMAG00000020587) #24	SMDT1 (ENSUMAG00000020585)	NDUFA6 (ENSUMAG00000020583) #25	ENSUMAG00000020572 #26	CYP2D6 (ENSUMAG00000020458) #27	TCF20 (ENSUMAG00000020422) #32	ENSUMAG00000020412 #33	SERHL2 (ENSUMAG00000020399)	RRP7A (ENSUMAG00000020394) #35	POLDIP3 (ENSUMAG00000020385) #36	CYB5R3 (ENSUMAG00000020374) #37	A4GALT (ENSUMAG00000020371)	ARFGAP3 (ENSUMAG00000020354)	PACSIN2 (ENSUMAG00000020346)
Giant Panda	MODERN SPECIES	6	ACO2 (ENSAMEG00000015641) #7	POLR3H (ENSAMEG00000015630) #8	CSDC2 (ENSAMEG00000015626) #9	PMM1 (ENSAMEG00000015609) #10	DESI1 (ENSAMEG00000015602) #11	XRCC6 (ENSAMEG00000015579) #12	SNU13 (ENSAMEG00000015574) #13	ENSAMEG00000030983	MEI1 (ENSAMEG00000015554) #14	ENSAMEG00000027124	CCDC134 (ENSAMEG00000015542) #15	SREBF2 (ENSAMEG00000015506) #16	CENPM (ENSAMEG00000009365) #19	SMIM45 (ENSAMEG00000019956) #20	SEPTIN3 (ENSAMEG00000009380) #21	WBP2NL (ENSAMEG00000009402) #22	NAGA (ENSAMEG00000009404) #23	PHETA2 (ENSAMEG00000019957) #24	SMDT1 (ENSAMEG00000009427)	NDUFA6 (ENSAMEG00000009428) #25	ENSAMEG00000009436 #26	CYP2D6 (ENSAMEG00000009440) #27	TCF20 (ENSAMEG00000009482) #32	NFAM1 (ENSAMEG00000009486) #33	ENSAMEG00000027626	RRP7A (ENSAMEG00000009503) #35	POLDIP3 (ENSAMEG00000009522) #36	CYB5R3 (ENSAMEG00000028135) #37	A4GALT (ENSAMEG00000019959)	ARFGAP3 (ENSAMEG00000006924)	PACSIN2 (ENSAMEG00000006883)
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
American mink	MODERN SPECIES	105	ACO2 (ENSNVIG00000000421) #7	RPC8 (ENSNVIG00000000359) #8	CSDC2 (ENSNVIG00000000351) #9	PMM1 (ENSNVIG00000000343) #10	DESI1 (ENSNVIG00000000338) #11	XRCC6 (ENSNVIG00000000144) #12	SNU13 (ENSNVIG00000000081) #13	ENSNVIG00000000049	MEI1 (ENSNVIG00000022357) #14	CC134 (ENSNVIG00000022338) #15	SREBF2 (ENSNVIG00000022327) #16	TNFRSF13C (ENSNVIG00000022314) #18	CENPM (ENSNVIG00000022296) #19	SMIM45 (ENSNVIG00000022293) #20	ENSNVIG00000022271 #21	WBP2NL (ENSNVIG00000022256) #22	NAGA (ENSNVIG00000022245) #23	PHETA2 (ENSNVIG00000022242) #24	SMDT1 (ENSNVIG00000022236)	NDUFA6 (ENSNVIG00000022214) #25	CYP2D6 (ENSNVIG00000022155) #27	TCF20 (ENSNVIG00000022142) #32	SERHL2 (ENSNVIG00000022102)	RRP7A (ENSNVIG00000022090) #35	POLDIP3 (ENSNVIG00000022082) #36	CYB5R3 (ENSNVIG00000022070) #37	A4GALT (ENSNVIG00000022062)	ARFGAP3 (ENSNVIG00000022001)	PACSIN2 (ENSNVIG00000021957)	TTLL1 (ENSNVIG00000021909)	TSPO (ENSNVIG00000021876)
Ferret	MODERN SPECIES	324	ACO2 (ENSMPUG00000016396) #7	POLR3H (ENSMPUG00000016395) #8	CSDC2 (ENSMPUG00000016392) #9	PMM1 (ENSMPUG00000016390) #10	DESI1 (ENSMPUG00000016385) #11	SNU13 (ENSMPUG00000016384) #13	XRCC6 (ENSMPUG00000016382) #12	ENSMPUG00000016380	MEI1 (ENSMPUG00000016379) #14	CCDC134 (ENSMPUG00000016378) #15	ENSMPUG00000016377 #17	SREBF2 (ENSMPUG00000016372) #16	TNFRSF13C (ENSMPUG00000016366) #18	CENPM (ENSMPUG00000016361) #19	ENSMPUG00000016339 #21	WBP2NL (ENSMPUG00000016336) #22	NAGA (ENSMPUG00000016335) #23	PHETA2 (ENSMPUG00000019592) #24	NDUFA6 (ENSMPUG00000016333) #25	ENSMPUG00000016331 #26	CYP2D6 (ENSMPUG00000016330) #27	TCF20 (ENSMPUG00000016327) #32	ENSMPUG00000016324	NFAM1 (ENSMPUG00000016322) #33	SERHL2 (ENSMPUG00000016316)	RRP7A (ENSMPUG00000016315) #35	POLDIP3 (ENSMPUG00000016314) #36	CYB5R3 (ENSMPUG00000016303) #37	A4GALT (ENSMPUG00000019590)	ARFGAP3 (ENSMPUG00000016301)	PACSIN2 (ENSMPUG00000016300)
Canidae	ANCESTRAL SPECIES	10	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339.j #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339.j #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00950000183198.c.b.a.u	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Dingo	MODERN SPECIES	307	ENSCAFG00020001943	DESI1 (ENSCAFG00020001937) #11	XRCC6 (ENSCAFG00020001627) #12	ENSCAFG00020001539 #13	ENSCAFG00020001537	MEI1 (ENSCAFG00020001461) #14	CCDC134 (ENSCAFG00020001443) #15	SREBF2 (ENSCAFG00020000981) #16	SHISA8 (ENSCAFG00020000935) #17	TNFRSF13C (ENSCAFG00020000909) #18	CENPM (ENSCAFG00020000905) #19	SMIM45 (ENSCAFG00020000900) #20	ENSCAFG00020000897	ENSCAFG00020000881 #21	ENSCAFG00020000874 #21	WBP2NL (ENSCAFG00020000849) #22	NAGA (ENSCAFG00020000842) #23	PHETA2 (ENSCAFG00020000836) #24	SMDT1 (ENSCAFG00020000823)	NDUFA6 (ENSCAFG00020000814) #25	CYP2D6 (ENSCAFG00020000322) #27	TCF20 (ENSCAFG00020000288) #32	ENSCAFG00020000282 #33	SERHL2 (ENSCAFG00020000268)	RRP7A (ENSCAFG00020000251) #35	POLDIP3 (ENSCAFG00020000227) #36	CYB5R3 (ENSCAFG00020000181) #37	A4GALT (ENSCAFG00020000170)	ARFGAP3 (ENSCAFG00020000154)	PACSIN2 (ENSCAFG00020010525)	TTLL1 (ENSCAFG00020010516)
Dog	MODERN SPECIES	1	ACO2 (ENSCAFG00845016969) #7	POLR3H (ENSCAFG00845016808) #8	CSDC2 (ENSCAFG00845016721) #9	PMM1 (ENSCAFG00845016625) #10	ENSCAFG00845016514 #11	XRCC6 (ENSCAFG00845016282) #12	SNU13 (ENSCAFG00845016061) #13	ENSCAFG00845016016	MEI1 (ENSCAFG00845015865) #14	CCDC134 (ENSCAFG00845015779) #15	SREBF2 (ENSCAFG00845015666) #16	SHISA8 (ENSCAFG00845015600) #17	TNFRSF13C (ENSCAFG00845015566) #18	CENPM (ENSCAFG00845015528) #19	SEPTIN3 (ENSCAFG00845015350) #21	WBP2NL (ENSCAFG00845015255) #22	NAGA (ENSCAFG00845015153) #23	PHETA2 (ENSCAFG00845015096) #24	SMDT1 (ENSCAFG00845015069)	NDUFA6 (ENSCAFG00845015040) #25	ENSCAFG00845015015 #26	CYP2D15 (ENSCAFG00845014943) #27	TCF20 (ENSCAFG00845014889) #32	NFAM1 (ENSCAFG00845014831) #33	SERHL2 (ENSCAFG00845014763)	RRP7 (ENSCAFG00845014703) #35	POLDIP3 (ENSCAFG00845014629) #36	CYB5R3 (ENSCAFG00845014552) #37	ENSCAFG00845014511	A4GALT (ENSCAFG00845014498)	ARFGAP3 (ENSCAFG00845014445)
Red fox	MODERN SPECIES	134	ACO2 (ENSVVUG00000003619) #7	POLR3H (ENSVVUG00000003543) #8	CSDC2 (ENSVVUG00000003532) #9	PMM1 (ENSVVUG00000003525) #10	DESI1 (ENSVVUG00000003501) #11	ENSVVUG00000003442 #12	ENSVVUG00000003430 #13	ENSVVUG00000003422	MEI1 (ENSVVUG00000003315) #14	CCDC134 (ENSVVUG00000003274) #15	SREBF2 (ENSVVUG00000003079) #16	CENPM (ENSVVUG00000003050) #19	SMIM45 (ENSVVUG00000003047) #20	ENSVVUG00000003040	SEPT3 (ENSVVUG00000002589) #21	WBP2NL (ENSVVUG00000002508) #22	NAGA (ENSVVUG00000002502) #23	PHETA2 (ENSVVUG00000002493) #24	SMDT1 (ENSVVUG00000002486)	NDUFA6 (ENSVVUG00000002468) #25	CYP2D6 (ENSVVUG00000002453) #27	TCF20 (ENSVVUG00000002422) #32	ENSVVUG00000002407 #33	SERHL2 (ENSVVUG00000002262)	RRP7A (ENSVVUG00000002248) #35	POLDIP3 (ENSVVUG00000002231) #36	CYB5R3 (ENSVVUG00000002208) #37	A4GALT (ENSVVUG00000002200)	ARFGAP3 (ENSVVUG00000002187)	PACSIN2 (ENSVVUG00000001092)	TTLL1 (ENSVVUG00000001022)
Felidae	ANCESTRAL SPECIES	2	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Panthera	ANCESTRAL SPECIES		ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
Tiger	MODERN SPECIES	130	ACO2 (ENSPTIG00000014744) #7	POLR3H (ENSPTIG00000016286) #8	CSDC2 (ENSPTIG00000017894) #9	PMM1 (ENSPTIG00000018216) #10	XRCC6 (ENSPTIG00000019026) #12	DESI1 (ENSPTIG00000020182) #11	SNU13 (ENSPTIG00000021078) #13	ENSPTIG00000021403	MEI1 (ENSPTIG00000021687) #14	CCDC134 (ENSPTIG00000003009) #15	SREBF2 (ENSPTIG00000006504) #16	ENSPTIG00000008224 #18	CENPM (ENSPTIG00000009368) #19	SMIM45 (ENSPTIG00000011104) #20	ENSPTIG00000011548 #21	WBP2NL (ENSPTIG00000013168) #22	NAGA (ENSPTIG00000013994) #23	PHETA2 (ENSPTIG00000004878) #24	SMDT1 (ENSPTIG00000015252)	NDUFA6 (ENSPTIG00000015981) #25	CYP2D6 (ENSPTIG00000016476) #27	TCF20 (ENSPTIG00000017350) #32	NFAM1 (ENSPTIG00000019052) #33	SERHL2 (ENSPTIG00000019555)	RRP7A (ENSPTIG00000020965) #35	POLDIP3 (ENSPTIG00000021396) #36	CYB5R3 (ENSPTIG00000002063) #37	A4GALT (ENSPTIG00000007558)	ARFGAP3 (ENSPTIG00000008192)	PACSIN2 (ENSPTIG00000011517)	TTLL1 (ENSPTIG00000017181)
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b	ENSGT00940000156720
lion	MODERN SPECIES	7	POLR3H (ENSPLOG00000012763) #8	CSDC2 (ENSPLOG00000012880) #9	PMM1 (ENSPLOG00000012988) #10	DESI1 (ENSPLOG00000013041) #11	XRCC6 (ENSPLOG00000013139) #12	ENSPLOG00000013318 #13	ENSPLOG00000013474	MEI1 (ENSPLOG00000013509) #14	CCDC134 (ENSPLOG00000013853) #15	SREBF2 (ENSPLOG00000013979) #16	SHISA8 (ENSPLOG00000014038) #17	TNFRSF13C (ENSPLOG00000014150) #18	CENPM (ENSPLOG00000014229) #19	SMIM45 (ENSPLOG00000014284) #20	ENSPLOG00000014331 #21	ENSPLOG00000014680 #22	NAGA (ENSPLOG00000014772) #23	PHETA2 (ENSPLOG00000014836) #24	SMDT1 (ENSPLOG00000014851)	NDUFA6 (ENSPLOG00000014890) #25	CYP2D6 (ENSPLOG00000014934) #27	TCF20 (ENSPLOG00000015043) #32	ENSPLOG00000015176 #33	ENSPLOG00000015222	RRP7A (ENSPLOG00000015304) #35	POLDIP3 (ENSPLOG00000015355) #36	CYB5R3 (ENSPLOG00000015576) #37	A4GALT (ENSPLOG00000015622)	ARFGAP3 (ENSPLOG00000015720)	PACSIN2 (ENSPLOG00000015850)	TTLL1 (ENSPLOG00000015917)
leopard	MODERN SPECIES	13	CSDC2 (ENSPPRG00000005049) #9	PMM1 (ENSPPRG00000004746) #10	DESI1 (ENSPPRG00000004562) #11	XRCC6 (ENSPPRG00000004390) #12	SNU13 (ENSPPRG00000004114) #13	ENSPPRG00000003751	MEI1 (ENSPPRG00000003624) #14	ENSPPRG00000003373	CCDC134 (ENSPPRG00000003261) #15	SREBF2 (ENSPPRG00000002884) #16	SHISA8 (ENSPPRG00000002601) #17	TNFRSF13C (ENSPPRG00000002529) #18	CENPM (ENSPPRG00000002403) #19	SMIM45 (ENSPPRG00000021195) #20	ENSPPRG00000002117 #21	WBP2NL (ENSPPRG00000001885) #22	NAGA (ENSPPRG00000001659) #23	PHETA2 (ENSPPRG00000021140) #24	SMDT1 (ENSPPRG00000001619)	NDUFA6 (ENSPPRG00000001515) #25	CYP2D6 (ENSPPRG00000001149) #27	TCF20 (ENSPPRG00000022788) #32	SERHL2 (ENSPPRG00000022923)	RRP7A (ENSPPRG00000022185) #35	POLDIP3 (ENSPPRG00000021188) #36	CYB5R3 (ENSPPRG00000020213) #37	A4GALT (ENSPPRG00000021068)	ARFGAP3 (ENSPPRG00000017345)	PACSIN2 (ENSPPRG00000016739)	TTLL1 (ENSPPRG00000014204)	MCAT (ENSPPRG00000014078)
Cat	MODERN SPECIES	238	POLR3H (ENSFCAG00000006684) #8	CSDC2 (ENSFCAG00000038283) #9	PMM1 (ENSFCAG00000006685) #10	DESI1 (ENSFCAG00000033281) #11	XRCC6 (ENSFCAG00000018784) #12	SNU13 (ENSFCAG00000027664) #13	ENSFCAG00000025013	MEI1 (ENSFCAG00000014285) #14	CCDC134 (ENSFCAG00000037479) #15	SREBF2 (ENSFCAG00000014289) #16	SHISA8 (ENSFCAG00000029558) #17	TNFRSF13C (ENSFCAG00000025989) #18	CENPM (ENSFCAG00000031560) #19	SMIM45 (ENSFCAG00000032859) #20	SEPTIN3 (ENSFCAG00000000889) #21	WBP2NL (ENSFCAG00000031385) #22	NAGA (ENSFCAG00000001451) #23	PHETA2 (ENSFCAG00000027697) #24	SMDT1 (ENSFCAG00000000892)	NDUFA6 (ENSFCAG00000025921) #25	ENSFCAG00000033784 #26	CYP2D6 (ENSFCAG00000026110) #27	TCF20 (ENSFCAG00000023219) #32	NFAM1 (ENSFCAG00000018760) #33	ENSFCAG00000043467	SERHL2 (ENSFCAG00000031831)	RRP7A (ENSFCAG00000033258) #35	POLDIP3 (ENSFCAG00000032029) #36	CYB5R3 (ENSFCAG00000037586) #37	A4GALT (ENSFCAG00000008576)	ARFGAP3 (ENSFCAG00000008578)
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Chiroptera	ANCESTRAL SPECIES	23	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Megabat	MODERN SPECIES	3649	ACO2 (ENSPVAG00000001163) #7	POLR3H (ENSPVAG00000001164) #8	CSDC2 (ENSPVAG00000001165) #9	PMM1 (ENSPVAG00000001166) #10	DESI1 (ENSPVAG00000001167) #11	XRCC6 (ENSPVAG00000001168) #12	SNU13 (ENSPVAG00000001171) #13	MEI1 (ENSPVAG00000001174) #14	CCDC134 (ENSPVAG00000001176) #15	SREBF2 (ENSPVAG00000001177) #16	ENSPVAG00000001183	TNFRSF13C (ENSPVAG00000001186) #18	CENPM (ENSPVAG00000001188) #19	ENSPVAG00000001189	ENSPVAG00000001191 #21	WBP2NL (ENSPVAG00000001192) #22	NAGA (ENSPVAG00000001193) #23	PHETA2 (ENSPVAG00000001194) #24	SMDT1 (ENSPVAG00000001195)	NDUFA6 (ENSPVAG00000001196) #25	CYP2D6 (ENSPVAG00000001197) #27	TCF20 (ENSPVAG00000001198) #32
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.y.b #13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Microbat	MODERN SPECIES	1176	POLR3H (ENSMLUG00000002487) #8	CSDC2 (ENSMLUG00000002495) #9	PMM1 (ENSMLUG00000002503) #10	DESI1 (ENSMLUG00000002511) #11	XRCC6 (ENSMLUG00000002516) #12	SNU13 (ENSMLUG00000002526) #13	ENSMLUG00000023695	ENSMLUG00000026652	ENSMLUG00000027511	MEI1 (ENSMLUG00000002527) #14	CCDC134 (ENSMLUG00000002544) #15	SREBF2 (ENSMLUG00000002549) #16	CENPM (ENSMLUG00000002564) #19	SMIM45 (ENSMLUG00000029274) #20	ENSMLUG00000002571 #21	WBP2NL (ENSMLUG00000013399) #22	NAGA (ENSMLUG00000012884) #23	PHETA2 (ENSMLUG00000022512) #24	ENSMLUG00000000560	NDUFA6 (ENSMLUG00000000556) #25	ENSMLUG00000028528 #26	ENSMLUG00000022264 #27	ENSMLUG00000005665 #27	ENSMLUG00000017135 #27	TCF20 (ENSMLUG00000005678) #32
Greater horseshoe bat	MODERN SPECIES	1	ACO2 (ENSRFEG00010017740) #7	POLR3H (ENSRFEG00010017658) #8	CSDC2 (ENSRFEG00010017619) #9	PMM1 (ENSRFEG00010017564) #10	DESI1 (ENSRFEG00010017478) #11	XRCC6 (ENSRFEG00010017302) #12	SNU13 (ENSRFEG00010017169) #13	MEI1 (ENSRFEG00010016537) #14	CCDC134 (ENSRFEG00010016458) #15	SREBF2 (ENSRFEG00010016385) #16	SHISA8 (ENSRFEG00010016301) #17	TNFRSF13C (ENSRFEG00010016267) #18	CENPM (ENSRFEG00010016155) #19	ENSRFEG00010016124 #20	SEPTIN3 (ENSRFEG00010015713) #21	ENSRFEG00010015682 #22	NAGA (ENSRFEG00010015637) #23	PHETA2 (ENSRFEG00010015616) #24	SMDT1 (ENSRFEG00010015560)	NDUFA6 (ENSRFEG00010015451) #25	CYP2D6 (ENSRFEG00010014956) #27	TCF20 (ENSRFEG00010014819) #32	NFAM1 (ENSRFEG00010014764) #33	SERHL2 (ENSRFEG00010014362)	RRP7A (ENSRFEG00010014301) #35	POLDIP3 (ENSRFEG00010014019) #36	CYB5R3 (ENSRFEG00010013917) #37	A4GALT (ENSRFEG00010013906)	ARFGAP3 (ENSRFEG00010013785)	ENSRFEG00010013743	PACSIN2 (ENSRFEG00010013614)
Equus	ANCESTRAL SPECIES	21	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840.z ##13	ENSGT00900000141218	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331.sb.a.a.a.a.b #27	ENSGT00940000153331.sb.a.a.a.a.a.b.a.a.b #27	ENSGT00940000153331.sb.a.a.a.a.a.b.a.a.a #27	ENSGT00940000153331.sb.b.a #27	ENSGT00940000153331.sb.a.a.a.a.a.b.b #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36
Donkey	MODERN SPECIES	11	POLR3H (ENSEASG00005001539) #8	CSDC2 (ENSEASG00005031038) #9	PMM1 (ENSEASG00005001528) #10	DESI1 (ENSEASG00005034212) #11	XRCC6 (ENSEASG00005001514) #12	ENSEASG00005036377 ##13	ENSEASG00005035516	MEI1 (ENSEASG00005001488) #14	CCDC134 (ENSEASG00005001482) #15	SREBF2 (ENSEASG00005001390) #16	SHISA8 (ENSEASG00005001339) #17	TNFRSF13C (ENSEASG00005027896) #18	CENPM (ENSEASG00005001323) #19	ENSEASG00005001317 #20	SEPTIN3 (ENSEASG00005001015) #21	WBP2NL (ENSEASG00005027774) #22	NAGA (ENSEASG00005000986) #23	PHETA2 (ENSEASG00005033621) #24	ENSEASG00005037370	ENSEASG00005024363 #25	ENSEASG00005000962 #26	ENSEASG00005000946 #27	ENSEASG00005000851 #27	ENSEASG00005038347 #27	ENSEASG00005018312 #27	ENSEASG00005000871 #27	ENSEASG00005036946 #27	ENSEASG00005000847 #27	ENSEASG00005032019 #27	ENSEASG00005034514 #27	ENSEASG00005023971 #27
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00530000063718.a.b #22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00530000063718.a.b #22
Tenrec	MODERN SPECIES	7366																ENSETEG00000017180 #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489.e	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00530000063825.A.c	ENSGT00510000047981.c
Opossum	MODERN SPECIES	7	ENSMODG00000041379	ENSMODG00000014337	AVPR1A (ENSMODG00000014334)	ENSMODG00000014328	ENSMODG00000044528	PPM1H (ENSMODG00000014325)	MON2 (ENSMODG00000014318)	ENSMODG00000014291	TAFA2 (ENSMODG00000014269)	ENSMODG00000051408	TAMALIN (ENSMODG00000014254)	ENSMODG00000014248	ENSMODG00000014244	SLC16A7 (ENSMODG00000014237)	ENSMODG00000014235	ENSMODG00000007056 #22	NAGA (ENSMODG00000007050) #23	ENSMODG00000007037	ENSMODG00000025341 #24	NDUFA6 (ENSMODG00000007030) #25	CYP2D6 (ENSMODG00000007024) #27	TCF20 (ENSMODG00000006993) #32	ENSMODG00000038464	ENSMODG00000049586 #33	RRP7A (ENSMODG00000006914) #35	POLDIP3 (ENSMODG00000006932) #36	ENSMODG00000006886	ARFGAP3 (ENSMODG00000006872)	TTLL1 (ENSMODG00000006847)	MCAT (ENSMODG00000006812)	ENSMODG00000006802
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489.e	ENSGT00390000018898 #25	ENSGT00500000045764 #26	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00530000063825.A.c	ENSGT00510000047981.c
Tasmanian devil	MODERN SPECIES	4	TOB2 (ENSSHAG00000030650)	PHF5A (ENSSHAG00000025116)	ACO2 (ENSSHAG00000010092) #7	POLR3H (ENSSHAG00000010196) #8	CSDC2 (ENSSHAG00000029872) #9	PMM1 (ENSSHAG00000025713) #10	DESI1 (ENSSHAG00000029515) #11	XRCC6 (ENSSHAG00000010790) #12	ENSSHAG00000024404	MEI1 (ENSSHAG00000011079) #14	ENSSHAG00000024514 #15	SREBF2 (ENSSHAG00000011682) #16	SHISA8 (ENSSHAG00000032342) #17	CENPM (ENSSHAG00000028188) #19	ENSSHAG00000012446 #21	ENSSHAG00000030112 #22	PHETA2 (ENSSHAG00000027807) #24	NDUFA6 (ENSSHAG00000027125) #25	ENSSHAG00000012743 #26	ENSSHAG00000021522 #27	TCF20 (ENSSHAG00000012959) #32	ENSSHAG00000026375 #33	ENSSHAG00000031424	SERHL2 (ENSSHAG00000022352)	POLDIP3 (ENSSHAG00000026608) #36	CYB5R3 (ENSSHAG00000026045) #37	ENSSHAG00000025340	ENSSHAG00000028796	ENSSHAG00000005037	ENSSHAG00000027099	ENSSHAG00000003065
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b.m #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489.e	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b.m #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163233 #17	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489.e	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000153962.b #37	ENSGT00530000063825.A.c	ENSGT00510000047981.c	ENSGT00940000158466	ENSGT00950000182973.a.c.b
Common wonbat	MODERN SPECIES	135	TOB2 (ENSVURG00010001752)	PHF5A (ENSVURG00010001740)	ACO2 (ENSVURG00010001726) #7	POLR3H (ENSVURG00010001680) #8	CSDC2 (ENSVURG00010001672) #9	ENSVURG00010001642 #10	DESI1 (ENSVURG00010001632) #11	XRCC6 (ENSVURG00010001619) #12	ENSVURG00010001607 #13	MEI1 (ENSVURG00010001558) #14	CCDC134 (ENSVURG00010001519) #15	SREBF2 (ENSVURG00010001443) #16	CENPM (ENSVURG00010001417) #19	SMIM45 (ENSVURG00010001403) #20	ENSVURG00010001361 #21	ENSVURG00010001344 #22	NAGA (ENSVURG00010001323) #23	SMDT1 (ENSVURG00010001310)	ENSVURG00010001290 #25
koala	MODERN SPECIES	13	ACO2 (ENSPCIG00000026414) #7	POLR3H (ENSPCIG00000026413) #8	CSDC2 (ENSPCIG00000033418) #9	PMM1 (ENSPCIG00000026411) #10	DESI1 (ENSPCIG00000026410) #11	XRCC6 (ENSPCIG00000026409) #12	SNU13 (ENSPCIG00000026408) #13	ENSPCIG00000026407	MEI1 (ENSPCIG00000026405) #14	CCDC134 (ENSPCIG00000026402) #15	SREBF2 (ENSPCIG00000026401) #16	ENSPCIG00000026400 #17	ENSPCIG00000022537	CENPM (ENSPCIG00000005701) #19	ENSPCIG00000004039 #21	ENSPCIG00000006132 #22	NAGA (ENSPCIG00000022807) #23	PHETA2 (ENSPCIG00000022802) #24	SMDT1 (ENSPCIG00000022794)	ENSPCIG00000022790 #25	ENSPCIG00000026203	CYP2D6 (ENSPCIG00000026201) #27	TCF20 (ENSPCIG00000026198) #32	ENSPCIG00000026197 #33	ENSPCIG00000026196	RRP7A (ENSPCIG00000026195) #35	POLDIP3 (ENSPCIG00000026194) #36	CYB5R3 (ENSPCIG00000026192) #37	ENSPCIG00000006625	A4GALT (ENSPCIG00000006631)	ARFGAP3 (ENSPCIG00000019314)
Platypus	MODERN SPECIES	5	PHF5A (ENSOANG00000044295)	ACO2 (ENSOANG00000003550) #7	POLR3H (ENSOANG00000004374) #8	CSDC2 (ENSOANG00000004309) #9	PMM1 (ENSOANG00000050238) #10	DESI1 (ENSOANG00000044638) #11	XRCC6 (ENSOANG00000011328) #12	SNU13 (ENSOANG00000011327) #13	MEI1 (ENSOANG00000004117) #14	ENSOANG00000042179 #15	SREBF2 (ENSOANG00000002461) #16	ENSOANG00000004529 #17	ENSOANG00000044226 #19	SMIM45 (ENSOANG00000004246) #20	ENSOANG00000004244 #21	ENSOANG00000036436 #22	NAGA (ENSOANG00000004242) #23	ENSOANG00000004241 #24	SMDT1 (ENSOANG00000002673)	NDUFA6 (ENSOANG00000004240) #25	CYP2D6 (ENSOANG00000004239) #27	TCF20 (ENSOANG00000049101) #32	ENSOANG00000001881	RRP7A (ENSOANG00000015007) #35	POLDIP3 (ENSOANG00000041313) #36	MIOX (ENSOANG00000044028)	SBF1 (ENSOANG00000050427)	PPP6R2 (ENSOANG00000001656)	DENND6B (ENSOANG00000003206)	PLXNB2 (ENSOANG00000007796)	ENSOANG00000036306
Sauria	ANCESTRAL SPECIES	4	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000154208.d	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00960000189432	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00940000154208.d	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159	ENSGT00940000155955.C
Elapidae	ANCESTRAL SPECIES	6	ENSGT00940000154208.d	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339.a #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000157896 #32	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00940000154208.d	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339.a #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000157896 #32	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000154208.d	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339.a #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000157896 #32	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858	ENSGT00390000000159	ENSGT00940000155955.C	ENSGT00530000063509.A	ENSGT00530000063707.a	ENSGT00940000155964
Eastern brown snake	MODERN SPECIES		TOB2 (ENSPTXG00000001691)	PHF5A (ENSPTXG00000001692)	ACO2 (ENSPTXG00000001693) #7	CSDC2 (ENSPTXG00000001696) #9	PMM1 (ENSPTXG00000000011) #10	DESI1 (ENSPTXG00000000015) #11	XRCC6 (ENSPTXG00000000018) #12	SNU13 (ENSPTXG00000000028) #13	ENSPTXG00000000049 #14	CCDC134 (ENSPTXG00000000073) #15	SREBF2 (ENSPTXG00000000089) #16	ENSPTXG00000000155	CENPM (ENSPTXG00000000182) #19	SMIM45 (ENSPTXG00000000284) #20	SEPTIN3 (ENSPTXG00000000292) #21	WBP2NL (ENSPTXG00000000364) #22	NAGA (ENSPTXG00000000376) #23	PHETA2 (ENSPTXG00000000394) #24	SMDT1 (ENSPTXG00000000401)	NDUFA6 (ENSPTXG00000000406) #25	TCF20 (ENSPTXG00000000413) #32	RRP7A (ENSPTXG00000000434) #35	POLDIP3 (ENSPTXG00000000446) #36	LUC7L2 (ENSPTXG00000000479)	FMC1 (ENSPTXG00000000496)	UBN2 (ENSPTXG00000000520)	TTC26 (ENSPTXG00000000543)	ENSPTXG00000000549	ENSPTXG00000000560	PLBD1 (ENSPTXG00000000588)	ATF7IP (ENSPTXG00000000606)
Mainland tiger snake	MODERN SPECIES	6	PHF5A (ENSNSUG00000003750)	ACO2 (ENSNSUG00000003747) #7	CSDC2 (ENSNSUG00000003745) #9	PMM1 (ENSNSUG00000003714) #10	DESI1 (ENSNSUG00000003709) #11	XRCC6 (ENSNSUG00000003704) #12	SNU13 (ENSNSUG00000003702) #13	ENSNSUG00000003697 #14	CCDC134 (ENSNSUG00000003692) #15	SREBF2 (ENSNSUG00000003621) #16	ENSNSUG00000003617	ENSNSUG00000003613	CENPM (ENSNSUG00000003609) #19	SMIM45 (ENSNSUG00000003608) #20	SEPTIN3 (ENSNSUG00000003603) #21	WBP2NL (ENSNSUG00000003570) #22	NAGA (ENSNSUG00000003563) #23	PHETA2 (ENSNSUG00000003562) #24	SMDT1 (ENSNSUG00000003561)	NDUFA6 (ENSNSUG00000003559) #25	ENSNSUG00000003551 #32	RRP7A (ENSNSUG00000003542) #35	POLDIP3 (ENSNSUG00000003536) #36	LUC7L2 (ENSNSUG00000003525)	ENSNSUG00000003524	FMC1 (ENSNSUG00000003523)	UBN2 (ENSNSUG00000003516)	TTC26 (ENSNSUG00000003511)	ENSNSUG00000003507	PLBD1 (ENSNSUG00000003462)	ENSNSUG00000003459
Blue-lipped sea krait	MODERN SPECIES	5573																WBP2NL (ENSLLTG00000015597) #22	NAGA (ENSLLTG00000015600) #23	PHETA2 (ENSLLTG00000015608) #24	SMDT1 (ENSLLTG00000015611)	NDUFA6 (ENSLLTG00000015617) #25	TCF20 (ENSLLTG00000015626) #32
Indian cobra	MODERN SPECIES	6	TOB2 (ENSNNAG00000004539)	PHF5A (ENSNNAG00000004530)	ACO2 (ENSNNAG00000004487) #7	CSDC2 (ENSNNAG00000004467) #9	PMM1 (ENSNNAG00000004428) #10	DESI1 (ENSNNAG00000004395) #11	XRCC6 (ENSNNAG00000004359) #12	SNU13 (ENSNNAG00000004338) #13	ENSNNAG00000004288 #14	CCDC134 (ENSNNAG00000004264) #15	SREBF2 (ENSNNAG00000003397) #16	ENSNNAG00000003289	CENPM (ENSNNAG00000003277) #19	SMIM45 (ENSNNAG00000003272) #20	SEPTIN3 (ENSNNAG00000003238) #21	WBP2NL (ENSNNAG00000003214) #22	NAGA (ENSNNAG00000003192) #23	PHETA2 (ENSNNAG00000003177) #24	SMDT1 (ENSNNAG00000003166)	NDUFA6 (ENSNNAG00000003142) #25	TCF20 (ENSNNAG00000015954) #32	RRP7A (ENSNNAG00000015937) #35	POLDIP3 (ENSNNAG00000015916) #36	LUC7L2 (ENSNNAG00000015867)	FMC1 (ENSNNAG00000015857)	UBN2 (ENSNNAG00000015822)	TTC26 (ENSNNAG00000015801)	ENSNNAG00000015789	PLBD1 (ENSNNAG00000015696)	ATF7IP (ENSNNAG00000015468)	GRIN2B (ENSNNAG00000015426)
Lizard	MODERN SPECIES	4	TOB2 (ENSACAG00000004782)	PHF5A (ENSACAG00000004775)	ACO2 (ENSACAG00000004677) #7	CSDC2 (ENSACAG00000042839) #9	PMM1 (ENSACAG00000004619) #10	DESI1 (ENSACAG00000004597) #11	XRCC6 (ENSACAG00000004508) #12	SNU13 (ENSACAG00000037043) #13	ENSACAG00000004476 #14	CCDC134 (ENSACAG00000004397) #15	SREBF2 (ENSACAG00000004146) #16	shisa8 (ENSACAG00000040885)	CENPM (ENSACAG00000039773) #19	SMIM45 (ENSACAG00000038314) #20	SEPTIN3 (ENSACAG00000003974) #21	WBP2NL (ENSACAG00000003971) #22	NAGA (ENSACAG00000003939) #23	PHETA2 (ENSACAG00000003936) #24	SMDT1 (ENSACAG00000003926)	NDUFA6 (ENSACAG00000003916) #25	ENSACAG00000043515 #27	ENSACAG00000041836 #27	ENSACAG00000036310 #27	ENSACAG00000003666 #27	ENSACAG00000035345	ENSACAG00000003634 #32	HEBP1 (ENSACAG00000041228)	ENSACAG00000022275	ENSACAG00000010644	DDX47 (ENSACAG00000010648)	ENSACAG00000010710
Laterata	ANCESTRAL SPECIES	6	ENSGT00940000154208.d	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.h #27	ENSGT00940000153331.g.b #27	ENSGT00940000153331.g.a #27	ENSGT00940000157896 #32	ENSGT00960000189432	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00950000183213.a.a.a	ENSGT00390000012258
Common wall lizard	MODERN SPECIES	1	CSDC2 (ENSPMRG00000020362) #9	PMM1 (ENSPMRG00000020353) #10	DESI1 (ENSPMRG00000020343) #11	XRCC6 (ENSPMRG00000020330) #12	SNU13 (ENSPMRG00000020324) #13	MEI1 (ENSPMRG00000020311) #14	CCDC134 (ENSPMRG00000020301) #15	SREBF2 (ENSPMRG00000020292) #16	ENSPMRG00000020282	ENSPMRG00000020277	ENSPMRG00000020276	ENSPMRG00000020268	CENPM (ENSPMRG00000020262) #19	ENSPMRG00000020252 #20	SEPTIN3 (ENSPMRG00000020243) #21	WBP2NL (ENSPMRG00000020237) #22	NAGA (ENSPMRG00000020231) #23	PHETA2 (ENSPMRG00000020224) #24	SMDT1 (ENSPMRG00000020222)	NDUFA6 (ENSPMRG00000020217) #25	ENSPMRG00000020180 #27	ENSPMRG00000020163 #27	ENSPMRG00000020151 #27	TCF20 (ENSPMRG00000020147) #32	ENSPMRG00000020133	SERHL2 (ENSPMRG00000020125)	RRP7A (ENSPMRG00000020106) #35	POLDIP3 (ENSPMRG00000020043) #36	LUC7L2 (ENSPMRG00000020017)	FMC1 (ENSPMRG00000019998)	UBN2 (ENSPMRG00000019883)
Argentine black and white tegu	MODERN SPECIES	6	TOB2 (ENSSMRG00000015352)	PHF5A (ENSSMRG00000015351)	ACO2 (ENSSMRG00000015350) #7	CSDC2 (ENSSMRG00000015349) #9	PMM1 (ENSSMRG00000015348) #10	DESI1 (ENSSMRG00000015347) #11	XRCC6 (ENSSMRG00000014777) #12	ENSSMRG00000014776	ENSSMRG00000014775 #14	CCDC134 (ENSSMRG00000014772) #15	SREBF2 (ENSSMRG00000014771) #16	ENSSMRG00000014770	ENSSMRG00000014769 #19	SMIM45 (ENSSMRG00000014768) #20	SEPTIN3 (ENSSMRG00000014767) #21	WBP2NL (ENSSMRG00000014765) #22	NAGA (ENSSMRG00000014764) #23	PHETA2 (ENSSMRG00000014763) #24	SMDT1 (ENSSMRG00000014762)	NDUFA6 (ENSSMRG00000014761) #25	ENSSMRG00000014547 #27	ENSSMRG00000014546 #27	ENSSMRG00000014545 #27	ENSSMRG00000014134 #27	TCF20 (ENSSMRG00000014127) #32	ENSSMRG00000014126	ENSSMRG00000014125	SERHL2 (ENSSMRG00000014124)	RRP7A (ENSSMRG00000014123) #35	POLDIP3 (ENSSMRG00000014122) #36	LUC7L2 (ENSSMRG00000014118)
tuatara	MODERN SPECIES	117										CCDC134 (ENSSPUG00000005802) #15	SREBF2 (ENSSPUG00000005826) #16	ENSSPUG00000005906	ENSSPUG00000005917	SMIM45 (ENSSPUG00000005925) #20	SEPTIN3 (ENSSPUG00000005948) #21	WBP2NL (ENSSPUG00000005998) #22	NAGA (ENSSPUG00000006010) #23	SMDT1 (ENSSPUG00000006052)	NDUFA6 (ENSSPUG00000006063) #25	CYP2D113 (ENSSPUG00000006415) #27	TCF20 (ENSSPUG00000007638) #32	ENSSPUG00000007651 #33	ENSSPUG00000007658
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00950000185866	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Cryptodira	ANCESTRAL SPECIES	10	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00950000185866	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.d #27	ENSGT00940000153331.c.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00950000185866	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.d #27	ENSGT00940000153331.c.a #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258
Emydidae	ANCESTRAL SPECIES	5	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00950000185866	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.d #27
painted turtle	MODERN SPECIES	2381	TEF (ENSCPBG00000020555)	PHF5A (ENSCPBG00000020547)	ACO2 (ENSCPBG00000020545) #7	POLR3H (ENSCPBG00000020544) #8	PMM1 (ENSCPBG00000020543) #10	CSDC2 (ENSCPBG00000020542) #9	DESI1 (ENSCPBG00000020538) #11	XRCC6 (ENSCPBG00000020535) #12	SNU13 (ENSCPBG00000020533) #13	CCDC134 (ENSCPBG00000020531) #15	SREBF2 (ENSCPBG00000020529) #16	ENSCPBG00000020528	ENSCPBG00000020525	CENPM (ENSCPBG00000020523) #19	SEPTIN3 (ENSCPBG00000020516) #21	WBP2NL (ENSCPBG00000020515) #22	NAGA (ENSCPBG00000020511) #23	PHETA2 (ENSCPBG00000020508) #24
Three-toed box turtle	MODERN SPECIES	118	PHF5A (ENSTMTG00000003280)	ACO2 (ENSTMTG00000003259) #7	POLR3H (ENSTMTG00000003249) #8	CSDC2 (ENSTMTG00000008503) #9	PMM1 (ENSTMTG00000008492) #10	DESI1 (ENSTMTG00000008481) #11	XRCC6 (ENSTMTG00000008458) #12	SNU13 (ENSTMTG00000008448) #13	MEI1 (ENSTMTG00000008364) #14	CCDC134 (ENSTMTG00000008350) #15	SREBF2 (ENSTMTG00000008314) #16	ENSTMTG00000008304	CENPM (ENSTMTG00000008294) #19	SMIM45 (ENSTMTG00000008286) #20	SEPTIN3 (ENSTMTG00000008267) #21	WBP2NL (ENSTMTG00000008254) #22	NAGA (ENSTMTG00000008176) #23	PHETA2 (ENSTMTG00000008144) #24	SMDT1 (ENSTMTG00000008134)	NDUFA6 (ENSTMTG00000008125) #25	ENSTMTG00000007256 #27
Testudinidae	ANCESTRAL SPECIES	14	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331.d #27	ENSGT00940000153331.c.b.a #27	ENSGT00940000157896 #32	ENSGT00960000189432	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258
Goode s thornscrub tortoise	MODERN SPECIES		PHF5A (ENSGEVG00005002334)	ACO2 (ENSGEVG00005002343) #7	POLR3H (ENSGEVG00005002371) #8	CSDC2 (ENSGEVG00005002384) #9	PMM1 (ENSGEVG00005002400) #10	XRCC6 (ENSGEVG00005002426) #12	DESI1 (ENSGEVG00005002450) #11	SNU13 (ENSGEVG00005000024) #13	ENSGEVG00005000036 #14	CCDC134 (ENSGEVG00005000051) #15	SREBF2 (ENSGEVG00005000095) #16	ENSGEVG00005000178	CENPM (ENSGEVG00005000203) #19	SMIM45 (ENSGEVG00005000222) #20	SEPTIN3 (ENSGEVG00005000247) #21	WBP2NL (ENSGEVG00005000291) #22	NAGA (ENSGEVG00005000313) #23	PHETA2 (ENSGEVG00005000333) #24	SMDT1 (ENSGEVG00005000343)	NDUFA6 (ENSGEVG00005000373) #25	ENSGEVG00005000395	ENSGEVG00005000410 #27	ENSGEVG00005000497 #27	ENSGEVG00005000652	ENSGEVG00005000713 #27	ENSGEVG00005000821 #27	ENSGEVG00005000857	ENSGEVG00005000869	TCF20 (ENSGEVG00005000902) #32	ENSGEVG00005000930	ENSGEVG00005000938
Abingdon island giant tortoise	MODERN SPECIES	88	PHF5A (ENSCABG00000022898)	ACO2 (ENSCABG00000022897) #7	POLR3H (ENSCABG00000022894) #8	CSDC2 (ENSCABG00000022893) #9	PMM1 (ENSCABG00000022891) #10	DESI1 (ENSCABG00000022890) #11	XRCC6 (ENSCABG00000022888) #12	SNU13 (ENSCABG00000022883) #13	ENSCABG00000022882 #14	CCDC134 (ENSCABG00000022880) #15	SREBF2 (ENSCABG00000022872) #16	ENSCABG00000022866	CENPM (ENSCABG00000022864) #19	SMIM45 (ENSCABG00000022862) #20	SEPTIN3 (ENSCABG00000022860) #21	WBP2NL (ENSCABG00000022858) #22	NAGA (ENSCABG00000022851) #23	PHETA2 (ENSCABG00000022845) #24	SMDT1 (ENSCABG00000022843)	NDUFA6 (ENSCABG00000022842) #25	ENSCABG00000022821 #27	ENSCABG00000022809	ENSCABG00000022808	ENSCABG00000022792 #27
Chinese turtle	MODERN SPECIES	875						ENSPSIG00000016499 #12	ENSPSIG00000016430	SNU13 (ENSPSIG00000016422) #13	MEI1 (ENSPSIG00000015744) #14	CCDC134 (ENSPSIG00000015552) #15	SREBF2 (ENSPSIG00000014746) #16	ENSPSIG00000014685	ENSPSIG00000014615	CENPM (ENSPSIG00000013293) #19	SEPTIN3 (ENSPSIG00000012269) #21	WBP2NL (ENSPSIG00000012263) #22	NAGA (ENSPSIG00000010820) #23	PHETA2 (ENSPSIG00000000642) #24	SMDT1 (ENSPSIG00000010743)	CYP2D6 (ENSPSIG00000010040) #27	TCF20 (ENSPSIG00000009594) #32	NFAM1 (ENSPSIG00000009345) #33	ENSPSIG00000000599	SERHL2 (ENSPSIG00000008367)	RRP7A (ENSPSIG00000007988) #35	POLDIP3 (ENSPSIG00000006347) #36	ENSPSIG00000006236
Archosauria	ANCESTRAL SPECIES	4	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00950000185866	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Aves	ANCESTRAL SPECIES	1	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00950000185866	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Golden eagle	MODERN SPECIES	8	ACO2 (ENSACCG00020011045) #7	POLR3H (ENSACCG00020011032) #8	CSDC2 (ENSACCG00020011025) #9	PMM1 (ENSACCG00020010995) #10	DESI1 (ENSACCG00020010985) #11	XRCC6 (ENSACCG00020010932) #12	SNU13 (ENSACCG00020010839) #13	MEI1 (ENSACCG00020010827) #14	CCDC134 (ENSACCG00020010797) #15	SREBF2 (ENSACCG00020010779) #16	ENSACCG00020010760	TNFRSF13C (ENSACCG00020010752) #18	CENPM (ENSACCG00020010738) #19	SMIM45 (ENSACCG00020010728) #20	SEPTIN3 (ENSACCG00020010715) #21	WBP2NL (ENSACCG00020010704) #22	NAGA (ENSACCG00020010696) #23	PHETA2 (ENSACCG00020010685) #24	SMDT1 (ENSACCG00020010678)	NDUFA6 (ENSACCG00020010666) #25	CYP2D6 (ENSACCG00020010656) #27	TCF20 (ENSACCG00020010633) #32	NFAM1 (ENSACCG00020010599) #33	ENSACCG00020010588	SERHL2 (ENSACCG00020010577)	RRP7A (ENSACCG00020010557) #35	POLDIP3 (ENSACCG00020010534) #36
Kakapo	MODERN SPECIES	20	ACO2 (ENSSHBG00005004055) #7	POLR3H (ENSSHBG00005004066) #8	CSDC2 (ENSSHBG00005004072) #9	PMM1 (ENSSHBG00005004080) #10	DESI1 (ENSSHBG00005004088) #11	XRCC6 (ENSSHBG00005004097) #12	SNU13 (ENSSHBG00005004108) #13	ENSSHBG00005004117 #14	ENSSHBG00005004126 #14	CCDC134 (ENSSHBG00005004136) #15	SREBF2 (ENSSHBG00005004151) #16	ENSSHBG00005004164	ENSSHBG00005004169	CENPM (ENSSHBG00005004178) #19	SEPTIN3 (ENSSHBG00005004182) #21	WBP2NL (ENSSHBG00005004191) #22	NAGA (ENSSHBG00005004197) #23	PHETA2 (ENSSHBG00005004204) #24	SMDT1 (ENSSHBG00005004211)	NDUFA6 (ENSSHBG00005004217) #25	CYP2D6 (ENSSHBG00005004284) #27	TCF20 (ENSSHBG00005004237) #32	ENSSHBG00005004321	ENSSHBG00005004327	RRP7A (ENSSHBG00005004335) #35	POLDIP3 (ENSSHBG00005004343) #36	ENSSHBG00005004364	ENSSHBG00005004391	LUC7L2 (ENSSHBG00005004399)	FMC1 (ENSSHBG00005004409)	UBN2 (ENSSHBG00005004435)
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Great tit	MODERN SPECIES	10	ACO2 (ENSPMJG00000004344) #7	POLR3H (ENSPMJG00000004341) #8	CSDC2 (ENSPMJG00000004340) #9	PMM1 (ENSPMJG00000003708) #10	DESI1 (ENSPMJG00000003706) #11	XRCC6 (ENSPMJG00000003281) #12	SNU13 (ENSPMJG00000003278) #13	MEI1 (ENSPMJG00000003253) #14	CCDC134 (ENSPMJG00000003161) #15	SREBF2 (ENSPMJG00000003158) #16	ENSPMJG00000003157	ENSPMJG00000003156	CENPM (ENSPMJG00000003154) #19	SMIM45 (ENSPMJG00000003152) #20	SEPTIN3 (ENSPMJG00000003150) #21	WBP2NL (ENSPMJG00000003148) #22	NAGA (ENSPMJG00000003145) #23	PHETA2 (ENSPMJG00000003144) #24	SMDT1 (ENSPMJG00000003139)	NDUFA6 (ENSPMJG00000003138) #25	CYP2D6 (ENSPMJG00000003134) #27	TCF20 (ENSPMJG00000003127) #32	NFAM1 (ENSPMJG00000003095) #33	ENSPMJG00000003093	SERHL2 (ENSPMJG00000003092)	ENSPMJG00000003091	POLDIP3 (ENSPMJG00000003090) #36	ENSPMJG00000003086	ENSPMJG00000003085	LUC7L2 (ENSPMJG00000003068)	FMC1 (ENSPMJG00000003067)
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Medium ground finch	MODERN SPECIES	37	PHF5A (ENSGFOG00000007986)	ACO2 (ENSGFOG00000007995) #7	POLR3H (ENSGFOG00000008010) #8	CSDC2 (ENSGFOG00000008013) #9	PMM1 (ENSGFOG00000008019) #10	DESI1 (ENSGFOG00000008027) #11	XRCC6 (ENSGFOG00000008034) #12	SNU13 (ENSGFOG00000008044) #13	ENSGFOG00000008048 #14	ENSGFOG00000008064 #14	SREBF2 (ENSGFOG00000008078) #16	ENSGFOG00000008111 #18	CENPM (ENSGFOG00000008121) #19	SMIM45 (ENSGFOG00000008124) #20	SEPTIN3 (ENSGFOG00000008129) #21	WBP2NL (ENSGFOG00000008136) #22	NAGA (ENSGFOG00000008147) #23	PHETA2 (ENSGFOG00000008152) #24	SMDT1 (ENSGFOG00000008159)	NDUFA6 (ENSGFOG00000008161) #25	CYP2D6 (ENSGFOG00000008172) #27	TCF20 (ENSGFOG00000008284) #32	NFAM1 (ENSGFOG00000008291) #33	ENSGFOG00000008298	SERHL2 (ENSGFOG00000008304)	RRP7A (ENSGFOG00000008311) #35	POLDIP3 (ENSGFOG00000008319) #36	ENSGFOG00000008334	ENSGFOG00000008359	LUC7L2 (ENSGFOG00000008370)	FMC1 (ENSGFOG00000008386)
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Common canary	MODERN SPECIES	6	PHF5A (ENSSCAG00000005591)	ACO2 (ENSSCAG00000005597) #7	POLR3H (ENSSCAG00000005603) #8	CSDC2 (ENSSCAG00000005611) #9	PMM1 (ENSSCAG00000005616) #10	DESI1 (ENSSCAG00000005622) #11	XRCC6 (ENSSCAG00000005654) #12	SNU13 (ENSSCAG00000005802) #13	MEI1 (ENSSCAG00000005808) #14	SREBF2 (ENSSCAG00000005828) #16	ENSSCAG00000005849	ENSSCAG00000005851 #18	CENPM (ENSSCAG00000005855) #19	SMIM45 (ENSSCAG00000005859) #20	SEPTIN3 (ENSSCAG00000005867) #21	WBP2NL (ENSSCAG00000005894) #22	NAGA (ENSSCAG00000005897) #23	PHETA2 (ENSSCAG00000005903) #24	SMDT1 (ENSSCAG00000005905)	NDUFA6 (ENSSCAG00000005906) #25	CYP2D6 (ENSSCAG00000005910) #27	TCF20 (ENSSCAG00000005916) #32	NFAM1 (ENSSCAG00000005919) #33	ENSSCAG00000005921	SERHL2 (ENSSCAG00000005928)	RRP7A (ENSSCAG00000005935) #35	POLDIP3 (ENSSCAG00000005939) #36	ENSSCAG00000005945	ENSSCAG00000005946	LUC7L2 (ENSSCAG00000005948)	FMC1 (ENSSCAG00000005951)
Zebra finch	MODERN SPECIES	11	ACO2 (ENSTGUG00000009907) #7	POLR3H (ENSTGUG00000009901) #8	CSDC2 (ENSTGUG00000019504) #9	PMM1 (ENSTGUG00000009884) #10	DESI1 (ENSTGUG00000023310) #11	XRCC6 (ENSTGUG00000009852) #12	SNU13 (ENSTGUG00000021658) #13	MEI1 (ENSTGUG00000009814) #14	CCDC134 (ENSTGUG00000009807) #15	SREBF2 (ENSTGUG00000009772) #16	ENSTGUG00000029583	ENSTGUG00000009769 #18	CENPM (ENSTGUG00000020931) #19	SMIM45 (ENSTGUG00000020918) #20	SEPTIN3 (ENSTGUG00000009729) #21	WBP2NL (ENSTGUG00000009723) #22	NAGA (ENSTGUG00000009714) #23	PHETA2 (ENSTGUG00000029353) #24	SMDT1 (ENSTGUG00000009712)	NDUFA6 (ENSTGUG00000009699) #25	CYP2D6 (ENSTGUG00000009674) #27	TCF20 (ENSTGUG00000009667) #32	NFAM1 (ENSTGUG00000009665) #33	ENSTGUG00000023295	SERHL2 (ENSTGUG00000009654)	RRP7A (ENSTGUG00000009647) #35	POLDIP3 (ENSTGUG00000009622) #36	ENSTGUG00000020503	ENSTGUG00000009608	LUC7L2 (ENSTGUG00000009593)	FMC1 (ENSTGUG00000009592)
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Japanese quail	MODERN SPECIES		ACO2 (ENSCJPG00005009104) #7	POLR3H (ENSCJPG00005009103) #8	CSDC2 (ENSCJPG00005009102) #9	ENSCJPG00005009101 ##10	DESI1 (ENSCJPG00005009100) #11	XRCC6 (ENSCJPG00005009099) #12	SNU13 (ENSCJPG00005009098) #13	MEI1 (ENSCJPG00005009097) #14	CCDC134 (ENSCJPG00005009096) #15	SREBF2 (ENSCJPG00005009094) #16	ENSCJPG00005009093	ENSCJPG00005009092 #18	CENPM (ENSCJPG00005009091) #19	SMIM45 (ENSCJPG00005009090) #20	SEPTIN3 (ENSCJPG00005009089) #21	WBP2NL (ENSCJPG00005009088) #22	NAGA (ENSCJPG00005009087) #23	PHETA2 (ENSCJPG00005009086) #24	SMDT1 (ENSCJPG00005009085)	NDUFA6 (ENSCJPG00005009084) #25	CYP2D6 (ENSCJPG00005009083) #27	TCF20 (ENSCJPG00005009082) #32	ENSCJPG00005009081	ENSCJPG00005009080	SERHL2 (ENSCJPG00005009076)	ENSCJPG00005009075	POLDIP3 (ENSCJPG00005009073) #36	ENSCJPG00005009038	ENSCJPG00005008995	ENSCJPG00005008994	LUC7L2 (ENSCJPG00005008992)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000163663.A	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Turkey	MODERN SPECIES		POLR3H (ENSMGAG00000012126) #8	CSDC2 (ENSMGAG00000012131) #9	ENSMGAG00000012110 #7	PMM1 (ENSMGAG00000012134) #10	DESI1 (ENSMGAG00000012139) #11	XRCC6 (ENSMGAG00000012146) #12	SNU13 (ENSMGAG00000012155) #13	MEI1 (ENSMGAG00000012159) #14	CCDC134 (ENSMGAG00000012164) #15	SREBF2 (ENSMGAG00000012074) #16	ENSMGAG00000020447	TNFRSF13C (ENSMGAG00000019790) #18	CENPM (ENSMGAG00000012104) #19	SMIM45 (ENSMGAG00000018986) #20	SEPTIN3 (ENSMGAG00000012105) #21	WBP2NL (ENSMGAG00000012033) #22	NAGA (ENSMGAG00000012043) #23	PHETA2 (ENSMGAG00000015714) #24	SMDT1 (ENSMGAG00000020728)	NDUFA6 (ENSMGAG00000019653) #25	CYP2D6 (ENSMGAG00000012053) #27	TCF20 (ENSMGAG00000012070) #32	ENSMGAG00000012069 #33	ENSMGAG00000017547	SERHL2 (ENSMGAG00000011970)	ENSMGAG00000011980	POLDIP3 (ENSMGAG00000011986) #36	ENSMGAG00000012000	ENSMGAG00000012002	LUC7L2 (ENSMGAG00000012006)	FMC1 (ENSMGAG00000019699)
Chicken	MODERN SPECIES		ACO2 (ENSGALG00010012720) #7	POLR3H (ENSGALG00010010891) #8	CSDC2 (ENSGALG00010010856) #9	PMM1 (ENSGALG00010010841) #10	DESI1 (ENSGALG00010010831) #11	XRCC6 (ENSGALG00010010792) #12	ENSGALG00010010771	MEI1 (ENSGALG00010010761) #14	CCDC134 (ENSGALG00010010740) #15	SREBF2 (ENSGALG00010010706) #16	SHISA8 (ENSGALG00010010680)	TNFRSF13C (ENSGALG00010010672) #18	CENPM (ENSGALG00010010648) #19	SMIM45 (ENSGALG00010009708) #20	SEPTIN3 (ENSGALG00010009995) #21	WBP2NL (ENSGALG00010009948) #22	NAGA (ENSGALG00010009866) #23	PHETA2 (ENSGALG00010009842) #24	SMDT1 (ENSGALG00010009809)	NDUFA6 (ENSGALG00010009795) #25	CYP2D6 (ENSGALG00010010061) #27	TCF20 (ENSGALG00010010291) #32	NFAM1 (ENSGALG00010010223) #33	SOCS1L (ENSGALG00010010371)	SERHL (ENSGALG00010010978)	RRP7A (ENSGALG00010010968) #35	POLDIP3 (ENSGALG00010010960) #36	ENSGALG00010010952	GBE (ENSGALG00010014321)	LUC7L2 (ENSGALG00010010947)	FMC1 (ENSGALG00010010929)
Anatidae	ANCESTRAL SPECIES	14	ENSGT00390000018518	ENSGT00940000154892 #7	ENSGT00390000004383 #8	ENSGT00390000000022.b #9	ENSGT00390000002918.a.b #10	ENSGT00730000111100 #11	ENSGT00940000153239.B #12	ENSGT00550000074840 #13	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000157339 #16	ENSGT00940000154485.A #18	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00940000162686 #24	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000153331 #27	ENSGT00940000157896 #32	ENSGT00390000000787 #33	ENSGT00940000167062	ENSGT00530000063960	ENSGT00390000018482 #35	ENSGT00390000018868.A #36	ENSGT00940000165231.a	ENSGT00950000183213.a.a.a	ENSGT00390000012258	ENSGT00940000155858
Duck	MODERN SPECIES		PHF5A (ENSAPLG00000021195)	ACO2 (ENSAPLG00000005198) #7	POLR3H (ENSAPLG00000005063) #8	CSDC2 (ENSAPLG00000005057) #9	DESI1 (ENSAPLG00000016507) #11	XRCC6 (ENSAPLG00000004469) #12	SNU13 (ENSAPLG00000001022) #13	ENSAPLG00000030477 #14	ENSAPLG00000003972 #14	ENSAPLG00000020731 #14	CCDC134 (ENSAPLG00000003824) #15	SREBF2 (ENSAPLG00000003145) #16	CENPM (ENSAPLG00000003037) #19	SMIM45 (ENSAPLG00000027486) #20	SEPTIN3 (ENSAPLG00000002801) #21	WBP2NL (ENSAPLG00000007253) #22	NAGA (ENSAPLG00000006939) #23	PHETA2 (ENSAPLG00000028764) #24	SMDT1 (ENSAPLG00000002343)	NDUFA6 (ENSAPLG00000006912) #25	CYP2D6 (ENSAPLG00000006049) #27	ENSAPLG00000021761 #32	ENSAPLG00000005795 #32	NFAM1 (ENSAPLG00000031012) #33	SERHL2 (ENSAPLG00000005552)	RRP7A (ENSAPLG00000019138) #35	POLDIP3 (ENSAPLG00000005154) #36	ENSAPLG00000005123	ENSAPLG00000005066	LUC7L2 (ENSAPLG00000004589)	UBN2 (ENSAPLG00000004433)
African ostrich	MODERN SPECIES	282	TEF (ENSSCUG00000000897)	TOB2 (ENSSCUG00000000898)	PHF5A (ENSSCUG00000000899)	ACO2 (ENSSCUG00000000901) #7	POLR3H (ENSSCUG00000000902) #8	PMM1 (ENSSCUG00000000905) #10	DESI1 (ENSSCUG00000000906) #11	MEI1 (ENSSCUG00000000908) #14	SNU13 (ENSSCUG00000000916) #13	CCDC134 (ENSSCUG00000000917) #15	SREBF2 (ENSSCUG00000000927) #16	TNFRSF13C (ENSSCUG00000000930) #18	CENPM (ENSSCUG00000000931) #19	SMIM45 (ENSSCUG00000000933) #20	SEPTIN3 (ENSSCUG00000000936) #21	WBP2NL (ENSSCUG00000000937) #22	NAGA (ENSSCUG00000000940) #23	PHETA2 (ENSSCUG00000000943) #24	NDUFA6 (ENSSCUG00000000945) #25	CYP2D6 (ENSSCUG00000000947) #27	ENSSCUG00000000949 #32	ENSSCUG00000000951 #32	ENSSCUG00000000954 #33	ENSSCUG00000000956	SERHL2 (ENSSCUG00000000958)	RRP7A (ENSSCUG00000000959) #35	POLDIP3 (ENSSCUG00000000960) #36	ENSSCUG00000000963	LUC7L2 (ENSSCUG00000000965)	ENSSCUG00000000967	ENSSCUG00000000968
Australian saltwater crocodile	MODERN SPECIES	49	CSDC2 (ENSCPRG00005019069) #9	PMM1 (ENSCPRG00005019070) #10	DESI1 (ENSCPRG00005019071) #11	ENSCPRG00005019072	XRCC6 (ENSCPRG00005019073) #12	ENSCPRG00005019074 #13	ENSCPRG00005019075 #13	ENSCPRG00005019076 #14	ENSCPRG00005019077 #14	CCDC134 (ENSCPRG00005019078) #15	SREBF2 (ENSCPRG00005019079) #16	ENSCPRG00005019080	CENPM (ENSCPRG00005019082) #19	SMIM45 (ENSCPRG00005019083) #20	SEPTIN3 (ENSCPRG00005019084) #21	WBP2NL (ENSCPRG00005019085) #22	NAGA (ENSCPRG00005019086) #23	SMDT1 (ENSCPRG00005019088)	NDUFA6 (ENSCPRG00005019089) #25	NR2C1 (ENSCPRG00005019090)	FGD6 (ENSCPRG00005019094)	VEZT (ENSCPRG00005019097)	ENSCPRG00005019099	METAP2 (ENSCPRG00005019100)	USP44 (ENSCPRG00005019103)	NTN4 (ENSCPRG00005019104)	ENSCPRG00005019105	AMDHD1 (ENSCPRG00005019106)	LTA4H (ENSCPRG00005019109)	HAL (ENSCPRG00005019112)	ELK3 (ENSCPRG00005019116)
Anura	ANCESTRAL SPECIES	20	ENSGT00390000018482 #35	ENSGT00530000063960.j	ENSGT00940000167062	ENSGT00940000162720.a.b.a	ENSGT00940000157896 #32	ENSGT00940000155858	ENSGT00390000000159	ENSGT00390000003133	ENSGT00940000155955.C	ENSGT00530000063707.a	ENSGT00940000155964	ENSGT00950000182696.A.a	ENSGT01050000244814.a.a.a.b	ENSGT00390000016992	ENSGT00530000063694.b	ENSGT00530000063718.a.b #22	ENSGT00940000153331.a #27	ENSGT00940000157339 #16	ENSGT00390000020164 #15	ENSGT00390000002077 #14	ENSGT00550000074840 #13	ENSGT00940000153239.B #12	ENSGT00730000111100 #11	ENSGT00390000002918.a.b #10	ENSGT00390000000022.b #9	ENSGT00390000004383 #8	ENSGT00940000154892 #7	ENSGT00390000018518	ENSGT00940000154208.d	ENSGT00940000156054	ENSGT00390000009228.b
Frog	MODERN SPECIES	4	nptxr (ENSXETG00000006906)	dnal4 (ENSXETG00000006905)	ENSXETG00000030996	sun2 (ENSXETG00000029959)	ddx17 (ENSXETG00000006900)	dmc1 (ENSXETG00000038374)	cby1 (ENSXETG00000006897)	tomm22 (ENSXETG00000006896)	josd1 (ENSXETG00000006895)	gtpbp1 (ENSXETG00000006894)	tob2 (ENSXETG00000046332)	phf5a (ENSXETG00000006893)	aco2 (ENSXETG00000006892) #7	polr3h (ENSXETG00000034216) #8	ENSXETG00000041968	wbp2nl (ENSXETG00000006890) #22	ENSXETG00000017472 #27	cyp2d6 (ENSXETG00000024804) #27	srebf2 (ENSXETG00000017449) #16	ccdc134 (ENSXETG00000017448) #15	c1orf21 (ENSXETG00000017447)	colgalt2 (ENSXETG00000017443)	tsen15 (ENSXETG00000038505)	apobec4 (ENSXETG00000017441)	hmcn1 (ENSXETG00000017411)	prg4 (ENSXETG00000040496)	tpr (ENSXETG00000017390)	odr4 (ENSXETG00000017388)	pdc (ENSXETG00000037305)	ptgs2 (ENSXETG00000017378)	pla2g4a (ENSXETG00000017371)
Leishan spiny toad	MODERN SPECIES	11	GUCY2C (ENSLLEG00000019946)	ENSLLEG00000020212	ENSLLEG00000020226	ATF7IP (ENSLLEG00000020258)	ENSLLEG00000020522	ENSLLEG00000020537	ENSLLEG00000020552	ENSLLEG00000020567	ENSLLEG00000020592	GRIN2B (ENSLLEG00000020630)	ENSLLEG00000020949	EMP1 (ENSLLEG00000020973)	GSG1 (ENSLLEG00000021042)	ENSLLEG00000021110	FAM234B (ENSLLEG00000021244)	ENSLLEG00000021639 #22	ENSLLEG00000022022 #27	ENSLLEG00000022393	ENSLLEG00000022429 #27	SREBF2 (ENSLLEG00000022583) #16	CCDC134 (ENSLLEG00000022883) #15	ENSLLEG00000022964	ENSLLEG00000023017	SNU13 (ENSLLEG00000023648) #13	ENSLLEG00000023732	XRCC6 (ENSLLEG00000023773) #12	DESI1 (ENSLLEG00000024098) #11	PMM1 (ENSLLEG00000024318) #10	CSDC2 (ENSLLEG00000024461) #9	POLR3H (ENSLLEG00000024517) #8	ENSLLEG00000024699
Coelacanth	MODERN SPECIES	3480															septin3 (ENSLACG00000002464) #21	wbp2nl (ENSLACG00000000227) #22
Actinopterygii	ANCESTRAL SPECIES	152	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a	ENSGT00940000155774.b	ENSGT00940000171928	ENSGT00950000182696.A.a	ENSGT01050000244814.a.a.a.b	ENSGT00390000016992	ENSGT00940000155964	ENSGT00530000063707.a	ENSGT00390000012258	ENSGT00940000160320	ENSGT00940000160809	ENSGT00390000017504 #19	ENSGT00420000030724 #20	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22	ENSGT00390000008751.a #23	ENSGT00390000017489	ENSGT00390000018898 #25	ENSGT00940000157340	ENSGT00390000015973	ENSGT00940000157339 #16	ENSGT00390000020164 #15	ENSGT00390000002077 #14	ENSGT00940000163984.A
Neopterygii	ANCESTRAL SPECIES	486													ENSGT00940000160809	ENSGT00390000017504 #19	ENSGT00940000158004 #21	ENSGT00530000063718.a.b #22
Osteoglossocephalai	ANCESTRAL SPECIES	86	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00390000017489.b	ENSGT00530000063694.b	ENSGT00950000183213.a.a.a	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00410000026495.B	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000155774.b	ENSGT00910000147001	ENSGT00940000155729	ENSGT01050000244824.G
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	64	ENSGT01030000234586.A.b.b	ENSGT00390000004010.a.b.b.a	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339.l.a #16	ENSGT00390000015973	ENSGT00940000157340.k.b.g	ENSGT00390000018898 #25	ENSGT00390000017489.b	ENSGT00530000063694.b	ENSGT00390000018868.A.i #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b.a #22	ENSGT00940000163377.a.a.e	ENSGT00390000012258	ENSGT00530000063707.a.e	ENSGT00940000155964.g	ENSGT00940000157896.jb.a #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b	ENSGT00390000003753.c	ENSGT00710000107036.a.a	ENSGT00940000155774.b	ENSGT00940000156865.b
Asian bonytongue	MODERN SPECIES	18	KDELR3 (ENSSFOG00015028156)	ENSSFOG00015012389	ENSSFOG00015012394	ENSSFOG00015031906 #14	CCDC134 (ENSSFOG00015012420) #15	ENSSFOG00015012430	srebf2 (ENSSFOG00015012442) #16	nol12 (ENSSFOG00015026638)	triobpb (ENSSFOG00015027730)	ndufa6 (ENSSFOG00015026864) #25	SMDT1 (ENSSFOG00015012507)	fam234b (ENSSFOG00015012522)	zgc:158803 (ENSSFOG00015012543)	ENSSFOG00015027570 #36	rrp7a (ENSSFOG00015012621) #35	wbp2nl (ENSSFOG00015012639) #22	ENSSFOG00015012652	FMC1 (ENSSFOG00015029355)	ENSSFOG00015024522	ENSSFOG00015027450	atf7ip (ENSSFOG00015012687)	GRIN2B (ENSSFOG00015012813)	ENSSFOG00015025633 #32	GSG1 (ENSSFOG00015013225)	emp1 (ENSSFOG00015030357)	ENSSFOG00015013268	ENSSFOG00015013291	ENSSFOG00015013307	pde6ha (ENSSFOG00015032155)	ENSSFOG00015013360	ENSSFOG00015027877
P. kingsleyae	MODERN SPECIES	250	KCNJ4 (ENSPKIG00000007774)	KDELR3 (ENSPKIG00000007754)	ENSPKIG00000007745	ENSPKIG00000007730	CCDC134 (ENSPKIG00000007715) #15	ENSPKIG00000007702	srebf2 (ENSPKIG00000007480) #16	nol12 (ENSPKIG00000007375)	triobpb (ENSPKIG00000007347)	ndufa6 (ENSPKIG00000007330) #25	ENSPKIG00000007318	fam234b (ENSPKIG00000007288)	ENSPKIG00000007263	ENSPKIG00000007231 #36	rrp7a (ENSPKIG00000007209) #35	wbp2nl (ENSPKIG00000007181) #22	ENSPKIG00000007161	atf7ip (ENSPKIG00000007136)	GRIN2B (ENSPKIG00000007087)	ENSPKIG00000007034 #32	emp1 (ENSPKIG00000006995)	ENSPKIG00000006929	ENSPKIG00000006854	GPRC5D (ENSPKIG00000006830)	pde6ha (ENSPKIG00000006811)	ENSPKIG00000006797	ENSPKIG00000006775	ddx47 (ENSPKIG00000006718)	tom1 (ENSPKIG00000006675)	gcat (ENSPKIG00000006643)	mcm5 (ENSPKIG00000006585)
Osteoglossiformes	ANCESTRAL SPECIES	173	ENSGT00940000156057.s.a	ENSGT00390000010231	ENSGT00390000010415	ENSGT00940000158046.a.a.b	ENSGT01030000234586.A.b.a	ENSGT00390000004010.a.b.b.b	ENSGT00940000157339.l.b #16	ENSGT00940000157340.k.b.h	ENSGT00950000183213.a.a.a	ENSGT00390000018868.A.j #36	ENSGT00390000017504 #19	ENSGT00940000160809	ENSGT00530000063960	ENSGT01090000260360	ENSGT00940000158004 #21	ENSGT00530000063718.a.b.b #22	ENSGT00940000163377.a.a.f
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015028374	KCNJ4 (ENSSFOG00015012570)	KDELR3 (ENSSFOG00015012527)	srebf2 (ENSSFOG00015012504) #16	ENSSFOG00015012476	zgc:158803 (ENSSFOG00015012444)	ENSSFOG00015012429 #36	ENSSFOG00015012399 #19	mb (ENSSFOG00015012384)	ENSSFOG00015012290	mb (ENSSFOG00015012023)	ENSSFOG00015011469	mb (ENSSFOG00015011114)	serhl (ENSSFOG00015024869)	ENSSFOG00015028224	wbp2nl (ENSSFOG00015011024) #22	ENSSFOG00015011017	atf7ip (ENSSFOG00015010983)	grin2bb (ENSSFOG00015010742)	si:ch211-243a20.3 (ENSSFOG00015010685)	ENSSFOG00015031589 #32	f8a (ENSSFOG00015010568)	emp1 (ENSSFOG00015030373)	ENSSFOG00015010535	RBFOX2 (ENSSFOG00015025375)	ENSSFOG00015025737	ENSSFOG00015010458	ENSSFOG00015010410	ENSSFOG00015030975	ENSSFOG00015010393	ENSSFOG00015010367
P. kingsleyae	MODERN SPECIES	141	si:dkey-43k4.3 (ENSPKIG00000002426)	polr2f (ENSPKIG00000002464)	sox10 (ENSPKIG00000002398)	KCNJ4 (ENSPKIG00000002382)	KDELR3 (ENSPKIG00000002353)	srebf2 (ENSPKIG00000002311) #16	ENSPKIG00000002253	smdt1b (ENSPKIG00000002230)	zgc:158803 (ENSPKIG00000002216)	ENSPKIG00000002188 #36	ENSPKIG00000002171	ENSPKIG00000002143 #19	mb (ENSPKIG00000002122)	serhl (ENSPKIG00000002097)	septin3 (ENSPKIG00000002056) #21	wbp2nl (ENSPKIG00000002026) #22	ENSPKIG00000002013
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a
Euteleosteomorpha	ANCESTRAL SPECIES		ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000162350.b.b
Acanthomorphata	ANCESTRAL SPECIES	25	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000162350.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000173517	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Pomacentridae	ANCESTRAL SPECIES	31	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.b.a
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.b.a
Amphiprion	ANCESTRAL SPECIES	25	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00950000182969.B.c.a.a.b.a.a.a.a.a.a.b.a
Clown anemonefish	MODERN SPECIES	3125																wbp2nl (ENSAOCG00000013705) #22	ENSAOCG00000013618	FMC1 (ENSAOCG00000013608)
Orange clownfish	MODERN SPECIES	5	ENSAPEG00000013065	kdelr3 (ENSAPEG00000013366)	ENSAPEG00000013378	ENSAPEG00000013387	ENSAPEG00000013409 #14	CCDC134 (ENSAPEG00000013430) #15	ENSAPEG00000013466	srebf2 (ENSAPEG00000013475) #16	nol12 (ENSAPEG00000013488)	ENSAPEG00000013496	triobpb (ENSAPEG00000013513)	ndufa6 (ENSAPEG00000013536) #25	fam234b (ENSAPEG00000013564)	ENSAPEG00000013658 #36	rrp7a (ENSAPEG00000013688) #35	wbp2nl (ENSAPEG00000013717) #22	ENSAPEG00000013743	FMC1 (ENSAPEG00000013753)	GRIN2B (ENSAPEG00000013764)	ENSAPEG00000013827 #32	GSG1 (ENSAPEG00000013837)	EMP1 (ENSAPEG00000013849)	ENSAPEG00000013863	ENSAPEG00000013905	GPRC5D (ENSAPEG00000013935)	ENSAPEG00000013967	mgp (ENSAPEG00000013989)	ENSAPEG00000014007	PLEKHF1 (ENSAPEG00000014020)	ENSAPEG00000014077	wbp11 (ENSAPEG00000014458)
Spiny chromis	MODERN SPECIES	277														ENSAPOG00000021223 #36	rrp7a (ENSAPOG00000021250) #35	wbp2nl (ENSAPOG00000021267) #22	ENSAPOG00000021286	FMC1 (ENSAPOG00000021300)	GRIN2B (ENSAPOG00000021359)	ENSAPOG00000000610 #32	GSG1 (ENSAPOG00000021404)	emp1 (ENSAPOG00000021422)	ENSAPOG00000021482	ENSAPOG00000021561	GPRC5D (ENSAPOG00000021592)	ENSAPOG00000021604	mgp (ENSAPOG00000021623)	ENSAPOG00000021634	PLEKHF1 (ENSAPOG00000021637)	ENSAPOG00000021672	wbp11 (ENSAPOG00000021695)
Bicolor damselfish	MODERN SPECIES	599												fam234b (ENSSPAG00000015939)	ENSSPAG00000016036	rrp7a (ENSSPAG00000016048) #35	ENSSPAG00000016059	wbp2nl (ENSSPAG00000016071) #22	ENSSPAG00000016088	FMC1 (ENSSPAG00000016123)	GRIN2B (ENSSPAG00000016142)	ENSSPAG00000016172 #32	GSG1 (ENSSPAG00000016186)	EMP1 (ENSSPAG00000016200)	ENSSPAG00000016224	ENSSPAG00000016248	ENSSPAG00000016272	GPRC5D (ENSSPAG00000016295)	ENSSPAG00000016307	ENSSPAG00000016317	ENSSPAG00000016332	PLEKHF1 (ENSSPAG00000016342)	ENSSPAG00000016359
Cichlidae	ANCESTRAL SPECIES	19	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Haplochromini	ANCESTRAL SPECIES	32	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000162350.b.b	ENSGT00940000160728.j	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b
Burton s mouthbrooder	MODERN SPECIES	564	ENSHBUG00000022042	kdelr3 (ENSHBUG00000022034)	ENSHBUG00000022010	ENSHBUG00000022001	MEI1 (ENSHBUG00000021971) #14	CCDC134 (ENSHBUG00000021950) #15	ENSHBUG00000021907	srebf2 (ENSHBUG00000021893) #16	nol12 (ENSHBUG00000021873)	triobpb (ENSHBUG00000021859)	ENSHBUG00000021832	ndufa6 (ENSHBUG00000000676) #25	fam234b (ENSHBUG00000021822)	ENSHBUG00000021806 #36	rrp7a (ENSHBUG00000021788) #35	wbp2nl (ENSHBUG00000021768) #22	ENSHBUG00000021731	FMC1 (ENSHBUG00000000671)	GRIN2B (ENSHBUG00000021706)	ENSHBUG00000021631 #32	ENSHBUG00000021623	ENSHBUG00000021589	ENSHBUG00000021577	ENSHBUG00000021563	ENSHBUG00000021544	ENSHBUG00000021537	ENSHBUG00000021529	GPRC5D (ENSHBUG00000021515)	ENSHBUG00000000856	ENSHBUG00000021409
Haplochromini_A	ANCESTRAL SPECIES	34	ENSGT00940000159856	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000162350.b.b	ENSGT00940000160728.j	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b
P. nyererei	MODERN SPECIES	376	polr2f (ENSPNYG00000019790)	sox10 (ENSPNYG00000019806)	ENSPNYG00000019860	ENSPNYG00000020070	kdelr3 (ENSPNYG00000020090)	CCDC134 (ENSPNYG00000020112) #15	ENSPNYG00000020187	srebf2 (ENSPNYG00000020194) #16	nol12 (ENSPNYG00000020267)	triobpb (ENSPNYG00000020282)	ndufa6 (ENSPNYG00000020298) #25	ENSPNYG00000020304	fam234b (ENSPNYG00000020317)	ENSPNYG00000020333 #36	rrp7a (ENSPNYG00000020343) #35	wbp2nl (ENSPNYG00000020355) #22	ENSPNYG00000020388	ENSPNYG00000020406	GRIN2B (ENSPNYG00000020415)	ENSPNYG00000020446 #32	ENSPNYG00000020453	EMP1 (ENSPNYG00000020463)	ENSPNYG00000020482	ENSPNYG00000020516	ENSPNYG00000020565	ENSPNYG00000020569	GPRC5D (ENSPNYG00000020582)	ENSPNYG00000020595	ENSPNYG00000020633	ENSPNYG00000020652	ddx47 (ENSPNYG00000020669)
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00940000159856	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000160728.j.j	ENSGT00710000107036.a.a	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000160728.j.i
Eastern happy	MODERN SPECIES	16	ENSACLG00000016235	ENSACLG00000016285	ENSACLG00000016306 #14	CCDC134 (ENSACLG00000016354) #15	ENSACLG00000016411	srebf2 (ENSACLG00000016424) #16	nol12 (ENSACLG00000016476)	ENSACLG00000016496	triobpb (ENSACLG00000016516)	ndufa6 (ENSACLG00000016559) #25	ENSACLG00000016708	fam234b (ENSACLG00000016714)	ENSACLG00000016753 #36	rrp7a (ENSACLG00000016790) #35	ENSACLG00000016800	wbp2nl (ENSACLG00000016819) #22	ENSACLG00000016837	ENSACLG00000016846	FMC1 (ENSACLG00000016854)	GRIN2B (ENSACLG00000016908)	ENSACLG00000016969	ENSACLG00000016988 #32	ENSACLG00000016999	EMP1 (ENSACLG00000017003)	ENSACLG00000017032	ENSACLG00000017180	ENSACLG00000017244	ENSACLG00000017258	PLEKHF1 (ENSACLG00000017282)	ENSACLG00000017288	ENSACLG00000017301
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005005430	ENSMZEG00005005421	ENSMZEG00005005407	CCDC134 (ENSMZEG00005005376) #15	ENSMZEG00005005368	srebf2 (ENSMZEG00005005342) #16	nol12 (ENSMZEG00005005326)	ENSMZEG00005005308	triobpb (ENSMZEG00005005290)	ENSMZEG00005005277	ndufa6 (ENSMZEG00005005262) #25	fam234b (ENSMZEG00005005248)	ENSMZEG00005005201 #36	rrp7a (ENSMZEG00005005197) #35	ENSMZEG00005005190	wbp2nl (ENSMZEG00005005180) #22	ENSMZEG00005005169	FMC1 (ENSMZEG00005005160)	ENSMZEG00005005150	GRIN2B (ENSMZEG00005005111)	ENSMZEG00005005101 #32	ENSMZEG00005005081	ENSMZEG00005005075	ENSMZEG00005005062	ENSMZEG00005005044	PLEKHF1 (ENSMZEG00005005036)	ENSMZEG00005005030	ENSMZEG00005005024	ENSMZEG00005005015	GPRC5D (ENSMZEG00005004995)	ENSMZEG00005004959
Lyretail cichlid	MODERN SPECIES	344	sox10 (ENSNBRG00000002461)	ENSNBRG00000002223	kdelr3 (ENSNBRG00000002189)	ENSNBRG00000002181	CCDC134 (ENSNBRG00000002157) #15	ENSNBRG00000002144	srebf2 (ENSNBRG00000002123) #16	nol12 (ENSNBRG00000002104)	ENSNBRG00000002089	triobpb (ENSNBRG00000002012)	ndufa6 (ENSNBRG00000001991) #25	ENSNBRG00000001981	fam234b (ENSNBRG00000001899)	ENSNBRG00000001837 #36	rrp7a (ENSNBRG00000001824) #35	wbp2nl (ENSNBRG00000001814) #22	ENSNBRG00000001794	FMC1 (ENSNBRG00000001781)	GRIN2B (ENSNBRG00000001736)	ENSNBRG00000001725 #32	GSG1 (ENSNBRG00000001699)	EMP1 (ENSNBRG00000001687)	ENSNBRG00000001651	ENSNBRG00000001602	ENSNBRG00000001590	ENSNBRG00000001568	GPRC5D (ENSNBRG00000001561)	ENSNBRG00000001552	ENSNBRG00000001502	PLEKHF1 (ENSNBRG00000001460)	ENSNBRG00000001446
Nile tilapia	MODERN SPECIES	16	kdelr3 (ENSONIG00000008389)	ENSONIG00000021078	ENSONIG00000008386	ENSONIG00000008384 #14	CCDC134 (ENSONIG00000008383) #15	ENSONIG00000042929	srebf2 (ENSONIG00000008375) #16	nol12 (ENSONIG00000008373)	triobpb (ENSONIG00000008372)	ndufa6 (ENSONIG00000040875) #25	ENSONIG00000037657	fam234b (ENSONIG00000008369)	ENSONIG00000008367 #36	rrp7a (ENSONIG00000008364) #35	ENSONIG00000008363	wbp2nl (ENSONIG00000008361) #22	hebp1 (ENSONIG00000027525)	FMC1 (ENSONIG00000032844)	GRIN2B (ENSONIG00000008357)	ENSONIG00000029047 #32	GSG1 (ENSONIG00000042588)	EMP1 (ENSONIG00000030635)	ENSONIG00000034319	ENSONIG00000008347	actb2 (ENSONIG00000003145)	ENSONIG00000033963	bud31 (ENSONIG00000008487)	pdap1 (ENSONIG00000038908)	shmt1 (ENSONIG00000008491)	cpsf4 (ENSONIG00000039547)	atp5mf (ENSONIG00000008498)
Midas cichlid	MODERN SPECIES	80	sox10 (ENSACIG00000000908)	ENSACIG00000000672	kdelr3 (ENSACIG00000000638)	ENSACIG00000000631	CCDC134 (ENSACIG00000000580) #15	ENSACIG00000000575	srebf2 (ENSACIG00000000356) #16	nol12 (ENSACIG00000000239)	triobpb (ENSACIG00000000187)	ndufa6 (ENSACIG00000023143) #25	ENSACIG00000023137	fam234b (ENSACIG00000023120)	POLDIP3 (ENSACIG00000023100) #36	rrp7a (ENSACIG00000023067) #35	ENSACIG00000023054	wbp2nl (ENSACIG00000023042) #22	ENSACIG00000023034	FMC1 (ENSACIG00000023029)	GRIN2B (ENSACIG00000023014)	ENSACIG00000023006 #32	ENSACIG00000023002	GSG1 (ENSACIG00000022954)	EMP1 (ENSACIG00000022941)	ENSACIG00000022930	ENSACIG00000022922	GPRC5D (ENSACIG00000022918)	ENSACIG00000022890	mgp (ENSACIG00000022867)	ENSACIG00000022856	PLEKHF1 (ENSACIG00000022848)	wbp11 (ENSACIG00000022829)
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.f	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000173517	ENSGT00940000155774.b
Aplocheiloidei	ANCESTRAL SPECIES	30	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000160728.j	ENSGT00940000155159.C.nb	ENSGT00940000155774.b	ENSGT01010000222553
Mangrove rivulus	MODERN SPECIES	37	ENSKMAG00000014213	kdelr3 (ENSKMAG00000014187)	ENSKMAG00000014175	ENSKMAG00000014135	CCDC134 (ENSKMAG00000014095) #15	ENSKMAG00000014081	srebf2 (ENSKMAG00000014057) #16	nol12 (ENSKMAG00000014033)	triobpb (ENSKMAG00000013987)	ndufa6 (ENSKMAG00000013923) #25	SMDT1 (ENSKMAG00000013910)	fam234b (ENSKMAG00000013886)	ENSKMAG00000013839 #36	rrp7a (ENSKMAG00000013819) #35	ENSKMAG00000013808	wbp2nl (ENSKMAG00000013789) #22	ENSKMAG00000013773	FMC1 (ENSKMAG00000013761)	GRIN2B (ENSKMAG00000013683)	ENSKMAG00000013660 #32	GSG1 (ENSKMAG00000013572)	emp1 (ENSKMAG00000013528)	ENSKMAG00000013493	ENSKMAG00000013479	ENSKMAG00000013354	GPRC5D (ENSKMAG00000013295)	ENSKMAG00000013281	ENSKMAG00000013262	PLEKHF1 (ENSKMAG00000013247)	MYH10 (ENSKMAG00000013141)	ddx47 (ENSKMAG00000013071)
Turquoise killifish	MODERN SPECIES	1612	kdelr3 (ENSNFUG00015012734)	Nfu_g_1_019461 (ENSNFUG00015012723)	ENSNFUG00015012707	ENSNFUG00015012699	CCDC134 (ENSNFUG00015012683) #15	Nfu_g_1_019684 (ENSNFUG00015012676)	SREBF2 (ENSNFUG00015012648) #16	NOL12 (ENSNFUG00015012635)	ENSNFUG00015012626	triobpb (ENSNFUG00015012614)	NDUFA6 (ENSNFUG00015012605) #25	C22ORF32 (ENSNFUG00015012602)	KIAA1467 (ENSNFUG00015012594)	RRP7A (ENSNFUG00015012586) #35	ENSNFUG00015012526	WBP2 (ENSNFUG00015012513) #22	HEBP1 (ENSNFUG00015012508)	C3H7ORF55 (ENSNFUG00015012505)	ENSNFUG00015012501	GRIN2B (ENSNFUG00015011596)	TCF20 (ENSNFUG00015011522) #32	GSG1 (ENSNFUG00015011480)	EMP1 (ENSNFUG00015011438)	ENSNFUG00015011429	ENSNFUG00015011407	Nfu_g_1_019352 (ENSNFUG00015011389)	ENSNFUG00015011379	GPRC5A (ENSNFUG00015011371)	OLA.6437 (ENSNFUG00015011353)	ENSNFUG00015011331	POLR2F (ENSNFUG00015011305)
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.f	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a.d	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000173517	ENSGT00940000155774.b
NAME_4	ANCESTRAL SPECIES	36	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00390000004010.a.b.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.f	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a.d	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a
Sheepshead minnow	MODERN SPECIES	123	ENSCVAG00000004542	ENSCVAG00000004532	mlh1 (ENSCVAG00000004525)	lrrfip2 (ENSCVAG00000000131)	CCDC134 (ENSCVAG00000004441) #15	ENSCVAG00000004434	srebf2 (ENSCVAG00000004432) #16	nol12 (ENSCVAG00000004424)	triobpb (ENSCVAG00000004415)	ndufa6 (ENSCVAG00000004404) #25	SMDT1 (ENSCVAG00000004396)	fam234b (ENSCVAG00000000807)	POLDIP3 (ENSCVAG00000004370) #36	rrp7a (ENSCVAG00000004349) #35	ENSCVAG00000004300	wbp2nl (ENSCVAG00000023281) #22	ENSCVAG00000023270	FMC1 (ENSCVAG00000023260)	ENSCVAG00000023255
Mummichog	MODERN SPECIES	2433	kdelr3 (ENSFHEG00000005774)	ENSFHEG00000005789	MEI1 (ENSFHEG00000005827) #14	CCDC134 (ENSFHEG00000005866) #15	ENSFHEG00000005876	srebf2 (ENSFHEG00000005891) #16	nol12 (ENSFHEG00000005900)	triobpb (ENSFHEG00000005912)	ndufa6 (ENSFHEG00000005922) #25	ENSFHEG00000005929	ENSFHEG00000005936	fam234b (ENSFHEG00000005949)	ENSFHEG00000006083 #36	rrp7a (ENSFHEG00000006098) #35	ENSFHEG00000000165	wbp2nl (ENSFHEG00000006130) #22	ENSFHEG00000006155	ENSFHEG00000006167	GRIN2B (ENSFHEG00000006227)	ENSFHEG00000006251 #32	GSG1 (ENSFHEG00000006278)	EMP1 (ENSFHEG00000006286)	ENSFHEG00000006305	ENSFHEG00000006319	ENSFHEG00000006358	ENSFHEG00000006384	GPRC5D (ENSFHEG00000006392)	ENSFHEG00000006400	ENSFHEG00000006405	ENSFHEG00000006442
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.f	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a.d	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000173517	ENSGT00940000155774.b
Poecilia	ANCESTRAL SPECIES	18	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.f	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a.d	ENSGT00940000175473	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000173517	ENSGT00940000155774.b
NAME_6	ANCESTRAL SPECIES	40	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g.f	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a.c	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00940000173517	ENSGT00940000155774.b
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1240														rrp7a (ENSPLAG00000009537) #35	ENSPLAG00000009530	wbp2nl (ENSPLAG00000009511) #22	ENSPLAG00000009472	FMC1 (ENSPLAG00000000821)	ENSPLAG00000009428
Sailfin molly	MODERN SPECIES	3999														rrp7a (ENSPLAG00000010787) #35	ENSPLAG00000010780	wbp2nl (ENSPLAG00000010770) #22
Amazon molly	MODERN SPECIES	364	kdelr3 (ENSPFOG00000000157)	ENSPFOG00000000172	ENSPFOG00000000184	MEI1 (ENSPFOG00000000271) #14	CCDC134 (ENSPFOG00000000404) #15	ENSPFOG00000020945	srebf2 (ENSPFOG00000000475) #16	nol12 (ENSPFOG00000022176)	triobpb (ENSPFOG00000000724)	ndufa6 (ENSPFOG00000000781) #25	ENSPFOG00000000802	fam234b (ENSPFOG00000000860)	ENSPFOG00000000926 #36	rrp7a (ENSPFOG00000001042) #35	ENSPFOG00000000959	wbp2nl (ENSPFOG00000001147) #22	ENSPFOG00000024393	ENSPFOG00000001215	FMC1 (ENSPFOG00000001281)	GRIN2B (ENSPFOG00000001367)	ENSPFOG00000001569 #32	ENSPFOG00000001605	EMP1 (ENSPFOG00000001669)	ENSPFOG00000001684	ENSPFOG00000001691	ENSPFOG00000001726	ENSPFOG00000001869	GPRC5D (ENSPFOG00000002032)	ENSPFOG00000002045	ENSPFOG00000022396	ENSPFOG00000002113
Guppy	MODERN SPECIES	460	kdelr3 (ENSPREG00000016701)	ENSPREG00000016697	ENSPREG00000016682	ENSPREG00000016661 #14	CCDC134 (ENSPREG00000016625) #15	ENSPREG00000016608	ENSPREG00000016588 #16	ENSPREG00000016573 #16	ENSPREG00000016560	ndufa6 (ENSPREG00000016546) #25	ENSPREG00000016553	fam234b (ENSPREG00000016535)	ENSPREG00000016505 #36	rrp7a (ENSPREG00000016492) #35	ENSPREG00000016473	wbp2nl (ENSPREG00000016456) #22	FMC1 (ENSPREG00000016447)	ENSPREG00000016426	GRIN2B (ENSPREG00000016322)	ENSPREG00000016275 #32	GSG1 (ENSPREG00000016233)	EMP1 (ENSPREG00000016203)	ENSPREG00000016170	ENSPREG00000016142	ENSPREG00000016105	GPRC5D (ENSPREG00000016085)	ENSPREG00000016076	ENSPREG00000016056	ENSPREG00000016027	PLEKHF1 (ENSPREG00000016018)	PLEKHF1 (ENSPREG00000015994)
Platyfish	MODERN SPECIES	7	ENSXMAG00000025865	kdelr3 (ENSXMAG00000001616)	ENSXMAG00000028471	ENSXMAG00000003047	CCDC134 (ENSXMAG00000024444) #15	ENSXMAG00000021830	srebf2 (ENSXMAG00000026713) #16	nol12 (ENSXMAG00000006120)	triobpb (ENSXMAG00000006137)	ndufa6 (ENSXMAG00000006143) #25	SMDT1 (ENSXMAG00000028587)	fam234b (ENSXMAG00000006147)	ENSXMAG00000006152 #36	rrp7a (ENSXMAG00000006165) #35	ENSXMAG00000006180	wbp2nl (ENSXMAG00000006185) #22	ENSXMAG00000006204	FMC1 (ENSXMAG00000025750)	GRIN2B (ENSXMAG00000006209)	ENSXMAG00000022178 #32	GSG1 (ENSXMAG00000006229)	EMP1 (ENSXMAG00000006233)	ENSXMAG00000028603	ENSXMAG00000006240	ENSXMAG00000006241	ENSXMAG00000026769	GPRC5D (ENSXMAG00000006260)	ENSXMAG00000006263	ENSXMAG00000029568	ENSXMAG00000023863	PLEKHF1 (ENSXMAG00000026391)
Oryzias	ANCESTRAL SPECIES		ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT01000000214705	ENSGT00940000160728.j	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a.c	ENSGT01010000222553
Oryzias_b	ANCESTRAL SPECIES	30	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b
Indian medaka	MODERN SPECIES	9	ENSOMEG00000006577	ENSOMEG00000006688	ENSOMEG00000006716	MEI1 (ENSOMEG00000006775) #14	CCDC134 (ENSOMEG00000006828) #15	ENSOMEG00000006837	srebf2 (ENSOMEG00000006881) #16	nol12 (ENSOMEG00000006905)	ENSOMEG00000006958	SMDT1 (ENSOMEG00000007007)	ndufa6 (ENSOMEG00000007021) #25	fam234b (ENSOMEG00000007047)	POLDIP3 (ENSOMEG00000007071) #36	rrp7a (ENSOMEG00000007090) #35	ENSOMEG00000007125	wbp2nl (ENSOMEG00000007153) #22	ENSOMEG00000007164	FMC1 (ENSOMEG00000007175)	GRIN2B (ENSOMEG00000007238)	ENSOMEG00000007278 #32	GSG1 (ENSOMEG00000000176)	EMP1 (ENSOMEG00000001045)	ENSOMEG00000007367	ENSOMEG00000007390	ENSOMEG00000007404	ENSOMEG00000007418	smarca4a (ENSOMEG00000007486)	ENSOMEG00000007516	ldlra (ENSOMEG00000007607)	kri1 (ENSOMEG00000007717)	spc24 (ENSOMEG00000007738)
Javanese ricefish	MODERN SPECIES	22	ENSOJAG00000006047	kdelr3 (ENSOJAG00000005953)	ENSOJAG00000005943	ENSOJAG00000005911	ENSOJAG00000005883 #14	CCDC134 (ENSOJAG00000005864) #15	ENSOJAG00000005831	ENSOJAG00000006600	triobpb (ENSOJAG00000006485)	ndufa6 (ENSOJAG00000006319) #25	SMDT1 (ENSOJAG00000006295)	fam234b (ENSOJAG00000006275)	ENSOJAG00000006181 #36	rrp7a (ENSOJAG00000006156) #35	ENSOJAG00000006117	wbp2nl (ENSOJAG00000006098) #22	ENSOJAG00000006090	FMC1 (ENSOJAG00000006073)	GRIN2B (ENSOJAG00000005350)	ENSOJAG00000005260 #32	GSG1 (ENSOJAG00000005197)	EMP1 (ENSOJAG00000005182)	foxd7 (ENSOJAG00000005177)	si:dkeyp-69e1.8 (ENSOJAG00000005167)	ENSOJAG00000005137	ankrd54 (ENSOJAG00000005108)	hmox1a (ENSOJAG00000005083)	mcm5 (ENSOJAG00000005020)	gcat (ENSOJAG00000004511)	tom1 (ENSOJAG00000004430)	zgc:171844 (ENSOJAG00000004384)
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g.e.b	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT01000000214705	ENSGT00940000160728.j	ENSGT00390000003753	ENSGT00390000013260.A.b.a	ENSGT00950000182961.a.b.b	ENSGT00940000157534.a.b	ENSGT00940000155083.a.c	ENSGT01010000222553
Japanese Medaka HdrR	MODERN SPECIES	22	ENSORLG00000024495	kdelr3 (ENSORLG00000014623)	ENSORLG00000030616	MEI1 (ENSORLG00000030316) #14	CCDC134 (ENSORLG00000014639) #15	ENSORLG00000027611	srebf2 (ENSORLG00000014672) #16	nol12 (ENSORLG00000014684)	triobpb (ENSORLG00000014718)	ndufa6 (ENSORLG00000014731) #25	ENSORLG00000014736	fam234b (ENSORLG00000014763)	POLDIP3 (ENSORLG00000014799) #36	rrp7a (ENSORLG00000014826) #35	ENSORLG00000014830	wbp2nl (ENSORLG00000025948) #22	ENSORLG00000014866	FMC1 (ENSORLG00000027359)	ENSORLG00000014892	ENSORLG00000022566 #32	ENSORLG00000024446	EMP1 (ENSORLG00000029849)	ENSORLG00000023526	ENSORLG00000014926	ENSORLG00000026788	ENSORLG00000014931	GPRC5D (ENSORLG00000025590)	ENSORLG00000014948	ENSORLG00000014964	wbp11 (ENSORLG00000014992)	ddx47 (ENSORLG00000015021)
Chinese medaka	MODERN SPECIES	1074	kdelr3 (ENSOSIG00000018256)	ENSOSIG00000018254	ENSOSIG00000018252	ENSOSIG00000018248 #14	CCDC134 (ENSOSIG00000018245) #15	ENSOSIG00000018244	srebf2 (ENSOSIG00000018240) #16	nol12 (ENSOSIG00000018233)	ENSOSIG00000018225	ENSOSIG00000018218	ndufa6 (ENSOSIG00000018214) #25	fam234b (ENSOSIG00000018209)	ENSOSIG00000018205	rrp7a (ENSOSIG00000018203) #35	ENSOSIG00000018196	wbp2nl (ENSOSIG00000018180) #22	ENSOSIG00000018171	FMC1 (ENSOSIG00000018168)	GRIN2B (ENSOSIG00000017991)	ENSOSIG00000017953 #32	GSG1 (ENSOSIG00000017948)	EMP1 (ENSOSIG00000017945)	ENSOSIG00000017941	PLEKHF1 (ENSOSIG00000017936)	ENSOSIG00000017932	ENSOSIG00000017926	GPRC5D (ENSOSIG00000017917)	ENSOSIG00000017915	ENSOSIG00000017914	wbp11 (ENSOSIG00000017911)	ddx47 (ENSOSIG00000017903)
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Tetraodontidae	ANCESTRAL SPECIES	74	ENSGT01030000234586.A.b.b	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705
Fugu	MODERN SPECIES	17	kdelr3 (ENSTRUG00000022968)	ENSTRUG00000032837	ENSTRUG00000008033	ccdc134 (ENSTRUG00000032166) #15	ENSTRUG00000032596	ENSTRUG00000030440	srebf2 (ENSTRUG00000007413) #16	nol12 (ENSTRUG00000029219)	triobpb (ENSTRUG00000007320)	ndufa6 (ENSTRUG00000007261) #25	SMDT1 (ENSTRUG00000023372)	fam234b (ENSTRUG00000006925)	POLDIP3 (ENSTRUG00000006604) #36	rrp7a (ENSTRUG00000024726) #35	ENSTRUG00000006370	wbp2nl (ENSTRUG00000006218) #22	ENSTRUG00000006086	ENSTRUG00000023420	GRIN2B (ENSTRUG00000005518)	ENSTRUG00000025636 #32	GSG1 (ENSTRUG00000005302)	emp1 (ENSTRUG00000025733)	ENSTRUG00000005133	ENSTRUG00000021905	ARL4D (ENSTRUG00000024375)	ENSTRUG00000004447	ENSTRUG00000031628	ENSTRUG00000026107	RARA (ENSTRUG00000010442)	ENSTRUG00000029065	ENSTRUG00000030343
Tetraodon	MODERN SPECIES	26	ENSTNIG00000010831	ENSTNIG00000010832	dtd2 (ENSTNIG00000001708)	ENSTNIG00000010833	DTD2 (ENSTNIG00000010834)	ENSTNIG00000006223	srebf2 (ENSTNIG00000010835) #16	nol12 (ENSTNIG00000010836)	triobpb (ENSTNIG00000010837)	ndufa6 (ENSTNIG00000010838) #25	SMDT1 (ENSTNIG00000010839)	fam234b (ENSTNIG00000010840)	POLDIP3 (ENSTNIG00000010841) #36	rrp7a (ENSTNIG00000010842) #35	ENSTNIG00000010843	wbp2nl (ENSTNIG00000010844) #22	ENSTNIG00000010845	FMC1 (ENSTNIG00000010846)	GRIN2B (ENSTNIG00000010847)	ENSTNIG00000010848 #32	ENSTNIG00000010849	emp1 (ENSTNIG00000010850)	BCL2L1 (ENSTNIG00000010851)	ENSTNIG00000004814	ENSTNIG00000002776	aoc2 (ENSTNIG00000004813)	kcnc3a (ENSTNIG00000003610)	ENSTNIG00000004208	ENSTNIG00000004209	ENSTNIG00000004210	ENSTNIG00000004046
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
European seabass	MODERN SPECIES	21	sox10 (ENSDLAG00005032773)	ENSDLAG00005015249	ENSDLAG00005029997	ENSDLAG00005015434	ENSDLAG00005015436	ENSDLAG00005027921 #14	ENSDLAG00005015469	srebf2 (ENSDLAG00005015476) #16	triobpb (ENSDLAG00005015566)	ndufa6 (ENSDLAG00005031637) #25	ENSDLAG00005033837	fam234b (ENSDLAG00005015637)	ENSDLAG00005015680 #36	rrp7a (ENSDLAG00005027194) #35	ENSDLAG00005029216	wbp2nl (ENSDLAG00005015691) #22	ENSDLAG00005028510	ENSDLAG00005015717	ENSDLAG00005015756	ENSDLAG00005031324 #32	ENSDLAG00005016888	EMP1 (ENSDLAG00005033864)	ENSDLAG00005028647	ENSDLAG00005013923	ENSDLAG00005013933	ENSDLAG00005033497	ENSDLAG00005028057	ENSDLAG00005013962	ENSDLAG00005013967	ENSDLAG00005013979	ENSDLAG00005014019
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005002166	ENSLCRG00005002164	MEI1 (ENSLCRG00005002160) #14	CCDC134 (ENSLCRG00005002159) #15	ENSLCRG00005002157	srebf2 (ENSLCRG00005001901) #16	nol12 (ENSLCRG00005001865)	triobpb (ENSLCRG00005001855)	ndufa6 (ENSLCRG00005001846) #25	SMDT1 (ENSLCRG00005001840)	fam234b (ENSLCRG00005001817)	ENSLCRG00005001783 #36	ENSLCRG00005001773	rrp7a (ENSLCRG00005001759) #35	ENSLCRG00005001743	wbp2nl (ENSLCRG00005001729) #22	ENSLCRG00005001715	FMC1 (ENSLCRG00005001706)	GRIN2B (ENSLCRG00005000832)	ENSLCRG00005000722 #32	GSG1 (ENSLCRG00005000720)	EMP1 (ENSLCRG00005000717)	ENSLCRG00005000711	ENSLCRG00005000696	GPRC5D (ENSLCRG00005000686)	ENSLCRG00005000677	ENSLCRG00005000625	ENSLCRG00005000597	ENSLCRG00005000589	PLEKHF1 (ENSLCRG00005018361)	ENSLCRG00005018360
Gilthead seabream	MODERN SPECIES	15	kdelr3 (ENSSAUG00010007054)	ENSSAUG00010007053	ENSSAUG00010007051	MEI1 (ENSSAUG00010007041) #14	CCDC134 (ENSSAUG00010007040) #15	ENSSAUG00010007038	srebf2 (ENSSAUG00010007027) #16	ENSSAUG00010007023	triobpb (ENSSAUG00010007021)	NDUFA6 (ENSSAUG00010007020) #25	SMDT1 (ENSSAUG00010007019)	fam234b (ENSSAUG00010007018)	ENSSAUG00010007016 #36	rrp7a (ENSSAUG00010007013) #35	ENSSAUG00010007009	wbp2nl (ENSSAUG00010007006) #22	ENSSAUG00010007004	GRIN2B (ENSSAUG00010006698)	ENSSAUG00010006690 #32	GSG1 (ENSSAUG00010006689)	EMP1 (ENSSAUG00010006687)	ENSSAUG00010006683	ENSSAUG00010006675	ENSSAUG00010006673	GPRC5D (ENSSAUG00010006669)	ENSSAUG00010006666	MGP (ENSSAUG00010006663)	bglap (ENSSAUG00010006659)	PLEKHF1 (ENSSAUG00010006656)	ENSSAUG00010006654	ENSSAUG00010006652
Perciformes	ANCESTRAL SPECIES	1	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Cottioidei	ANCESTRAL SPECIES	1	ENSGT01030000234586.A.b.b	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00940000166743	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT01000000214806	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b	ENSGT01010000222553
Lumpfish	MODERN SPECIES	23	sox10 (ENSCLMG00005020988)	ENSCLMG00005020972	kdelr3 (ENSCLMG00005020965)	ENSCLMG00005020963	ENSCLMG00005020959	CCDC134 (ENSCLMG00005020954) #15	ENSCLMG00005020951	srebf2 (ENSCLMG00005020946) #16	nol12 (ENSCLMG00005020944)	triobpb (ENSCLMG00005020943)	ndufa6 (ENSCLMG00005020941) #25	fam234b (ENSCLMG00005020939)	ENSCLMG00005020937 #36	POLDIP3 (ENSCLMG00005020936) #36	rrp7a (ENSCLMG00005020935) #35	wbp2nl (ENSCLMG00005020934) #22	ENSCLMG00005020932	FMC1 (ENSCLMG00005020931)	GRIN2B (ENSCLMG00005020923)	ENSCLMG00005020918 #32	ENSCLMG00005020917 #32	GSG1 (ENSCLMG00005020914)	EMP1 (ENSCLMG00005020913)	ENSCLMG00005020912	ENSCLMG00005020911	GPRC5D (ENSCLMG00005020910)	ENSCLMG00005020909	ENSCLMG00005020908	PLEKHF1 (ENSCLMG00005020906)	ENSCLMG00005020904	ddx47 (ENSCLMG00005020903)
Stickleback	MODERN SPECIES	10	sox10 (ENSGACG00000007318)	ENSGACG00000007314	kdelr3 (ENSGACG00000007290)	ENSGACG00000007287	ENSGACG00000007284	ENSGACG00000007283	ENSGACG00000007273 #14	ENSGACG00000007268	srebf2 (ENSGACG00000007259) #16	nol12 (ENSGACG00000007246)	triobpb (ENSGACG00000007243)	ndufa6 (ENSGACG00000007237) #25	fam234b (ENSGACG00000007233)	POLDIP3 (ENSGACG00000007224) #36	rrp7a (ENSGACG00000007212) #35	wbp2nl (ENSGACG00000007206) #22	ENSGACG00000007202	GRIN2B (ENSGACG00000007197)	ENSGACG00000007193 #32	ENSGACG00000007190	EMP1 (ENSGACG00000007184)	ENSGACG00000007176	ENSGACG00000007174	ENSGACG00000007173	ENSGACG00000007162	ENSGACG00000007157	ENSGACG00000007152	PLEKHF1 (ENSGACG00000007149)	ENSGACG00000007143	wbp11 (ENSGACG00000007131)	ddx47 (ENSGACG00000007092)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000158046.a.a	ENSGT01030000234586.A.b.b	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Pike perch	MODERN SPECIES	38	sox10 (ENSSLUG00000021782)	ENSSLUG00000021776	kdelr3 (ENSSLUG00000021774)	ENSSLUG00000021772	ENSSLUG00000021763 #14	CCDC134 (ENSSLUG00000021758) #15	ENSSLUG00000021754	srebf2 (ENSSLUG00000021745) #16	nol12 (ENSSLUG00000021737)	triobpb (ENSSLUG00000021734)	ndufa6 (ENSSLUG00000021731) #25	fam234b (ENSSLUG00000021726)	ENSSLUG00000021716 #36	rrp7a (ENSSLUG00000021713) #35	ENSSLUG00000021704	wbp2nl (ENSSLUG00000021691) #22	ENSSLUG00000021686	FMC1 (ENSSLUG00000021682)	GRIN2B (ENSSLUG00000021674)	ENSSLUG00000021667 #32	EMP1 (ENSSLUG00000021661)	ENSSLUG00000021653	ENSSLUG00000021642	ENSSLUG00000021638	ENSSLUG00000021631	ENSSLUG00000021624	ENSSLUG00000021620	ENSSLUG00000021616	PLEKHF1 (ENSSLUG00000021613)	ENSSLUG00000021609	ddx47 (ENSSLUG00000021570)
Channel bull blenny	MODERN SPECIES	22	sox10 (ENSCGOG00000006774)	ENSCGOG00000006797	kdelr3 (ENSCGOG00000006899)	ENSCGOG00000006898	ENSCGOG00000006901	CCDC134 (ENSCGOG00000006903) #15	ENSCGOG00000006911	srebf2 (ENSCGOG00000006914) #16	nol12 (ENSCGOG00000006941)	triobpb (ENSCGOG00000006943)	ndufa6 (ENSCGOG00000006949) #25	fam234b (ENSCGOG00000006948)	POLDIP3 (ENSCGOG00000006953) #36	rrp7a (ENSCGOG00000006986) #35	ENSCGOG00000007003	wbp2nl (ENSCGOG00000007005) #22	ENSCGOG00000007010	FMC1 (ENSCGOG00000007012)	GRIN2B (ENSCGOG00000007014)	ENSCGOG00000007023 #32	GSG1 (ENSCGOG00000007030)	EMP1 (ENSCGOG00000007040)	ENSCGOG00000007044	ENSCGOG00000007047	ENSCGOG00000007054	GPRC5D (ENSCGOG00000007059)	ENSCGOG00000007062	ENSCGOG00000007069	mgp (ENSCGOG00000007071)	PLEKHF1 (ENSCGOG00000007077)	wbp11 (ENSCGOG00000007082)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	4133																wbp2nl (ENSLBEG00000008727) #22
Ballan wrasse	MODERN SPECIES	3409															EMP1 (ENSLBEG00000007042)	wbp2nl (ENSLBEG00000007088) #22
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000171928	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a
Carangaria	ANCESTRAL SPECIES	4	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT00940000162350.b.b
Seriola	ANCESTRAL SPECIES	23	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000159979.a.a	ENSGT00940000158718.a.b	ENSGT00390000000976.d.b	ENSGT00950000183036.b.f	ENSGT00940000168611	ENSGT00940000154990.fb.b	ENSGT00940000156166.b.a.a	ENSGT00940000159311.d.a.a	ENSGT00940000154912.u.b	ENSGT00940000165172.a	ENSGT00530000064086	ENSGT00940000155632.o	ENSGT00550000075117.m.b	ENSGT00950000183099	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000175473	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT01010000222553
Greater amberjack	MODERN SPECIES	50	ptger1b (ENSSDUG00000008765)	ENSSDUG00000008791	pglyrp6 (ENSSDUG00000008874)	trappc5 (ENSSDUG00000008885)	MCOLN1 (ENSSDUG00000008892)	ENSSDUG00000008915	pkn1b (ENSSDUG00000008941)	ENSSDUG00000009062	ENSSDUG00000009068	DDX39A (ENSSDUG00000009075)	ENSSDUG00000009092	txn2 (ENSSDUG00000009105)	MYH9 (ENSSDUG00000009131)	slc25a38a (ENSSDUG00000009203)	rpsa (ENSSDUG00000009226)	wbp2nl (ENSSDUG00000009267) #22	ENSSDUG00000009280	FMC1 (ENSSDUG00000009286)	GRIN2B (ENSSDUG00000009297)	ENSSDUG00000009331 #32	GSG1 (ENSSDUG00000009388)	EMP1 (ENSSDUG00000009432)	ENSSDUG00000009442	ENSSDUG00000009494	ENSSDUG00000009511	GPRC5D (ENSSDUG00000009555)	ENSSDUG00000009568	ENSSDUG00000009678	ENSSDUG00000009714	PLEKHF1 (ENSSDUG00000009806)
Yellowtail amberjack	MODERN SPECIES	2955	farsa (ENSSLDG00000017108)	ilf3b (ENSSLDG00000017171)	ptger1b (ENSSLDG00000017216)	ENSSLDG00000017246	MCOLN1 (ENSSLDG00000017349)	ENSSLDG00000017373	pkn1b (ENSSLDG00000017422)	ENSSLDG00000017614	ENSSLDG00000017629	DDX39A (ENSSLDG00000017643)	ENSSLDG00000017668	txn2 (ENSSLDG00000017678)	MYH9 (ENSSLDG00000017702)	slc25a38a (ENSSLDG00000017773)	rpsa (ENSSLDG00000017797)	wbp2nl (ENSSLDG00000017855) #22	ENSSLDG00000017865	FMC1 (ENSSLDG00000017877)	GRIN2B (ENSSLDG00000017898)	ENSSLDG00000017930 #32	GSG1 (ENSSLDG00000017976)	emp1 (ENSSLDG00000018019)	ENSSLDG00000018034	ENSSLDG00000018052	GPRC5D (ENSSLDG00000018073)	ENSSLDG00000018078	mgp (ENSSLDG00000018100)	ENSSLDG00000018109	PLEKHF1 (ENSSLDG00000018119)	wbp11 (ENSSLDG00000018127)	ddx47 (ENSSLDG00000018142)
Barramundi perch	MODERN SPECIES	147	kdelr3 (ENSLCAG00010012302)	ENSLCAG00010012308	ENSLCAG00010012310	MEI1 (ENSLCAG00010012321) #14	CCDC134 (ENSLCAG00010012334) #15	ENSLCAG00010012340	srebf2 (ENSLCAG00010012346) #16	nol12 (ENSLCAG00010012357)	triobpb (ENSLCAG00010012366)	ndufa6 (ENSLCAG00010012375) #25	fam234b (ENSLCAG00010012381)	SMDT1 (ENSLCAG00010012388)	POLDIP3 (ENSLCAG00010012401) #36	rrp7a (ENSLCAG00010012411) #35	ENSLCAG00010012416	wbp2nl (ENSLCAG00010012421) #22	ENSLCAG00010012433	FMC1 (ENSLCAG00010012438)	GRIN2B (ENSLCAG00010012442)	ENSLCAG00010012455 #32	ENSLCAG00010012460 #32	GSG1 (ENSLCAG00010012471)	ENSLCAG00010012478	ENSLCAG00010012487	ENSLCAG00010012495	ENSLCAG00010012501	GPRC5D (ENSLCAG00010012505)	ENSLCAG00010012510	mgp (ENSLCAG00010012514)	ENSLCAG00010012519	PLEKHF1 (ENSLCAG00010012525)
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00940000161324.h.b	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000171928	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j
Turbot	MODERN SPECIES	10	ENSSMAG00000004918	ENSSMAG00000026699	ENSSMAG00000025466	ENSSMAG00000004887	ENSSMAG00000004803	ENSSMAG00000004809 #15	srebf2 (ENSSMAG00000004757) #16	nol12 (ENSSMAG00000004745)	triobpb (ENSSMAG00000004729)	ndufa6 (ENSSMAG00000004719) #25	ENSSMAG00000034550	fam234b (ENSSMAG00000004687)	ENSSMAG00000004609 #36	rrp7a (ENSSMAG00000004593) #35	ENSSMAG00000004548	wbp2nl (ENSSMAG00000036109) #22	ENSSMAG00000025476	ENSSMAG00000033129	ENSSMAG00000004458	ENSSMAG00000004442 #32	GSG1 (ENSSMAG00000004400)	ENSSMAG00000035080	ENSSMAG00000004351	ENSSMAG00000004317	ENSSMAG00000004297	ENSSMAG00000004283	ENSSMAG00000004268	ENSSMAG00000004248	ENSSMAG00000037888	ENSSMAG00000025646	ENSSMAG00000025047
Anabantaria	ANCESTRAL SPECIES	6	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT01010000222553
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.b.a.c.a.a	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000160728.j	ENSGT01010000222553
Climbing perch	MODERN SPECIES	21	ENSATEG00000023604	ENSATEG00000029450 #14	ENSATEG00000025558 #14	ENSATEG00000009453 #15	ENSATEG00000009478	srebf2 (ENSATEG00000009484) #16	nol12 (ENSATEG00000009548)	ENSATEG00000009554	triobpb (ENSATEG00000009571)	ndufa6 (ENSATEG00000029527) #25	ENSATEG00000027018	fam234b (ENSATEG00000009609)	ENSATEG00000009633 #36	rrp7a (ENSATEG00000009664) #35	ENSATEG00000009679	wbp2nl (ENSATEG00000009709) #22	ENSATEG00000009725	ENSATEG00000026834	ENSATEG00000009755	ENSATEG00000009819 #32	GSG1 (ENSATEG00000009837)	EMP1 (ENSATEG00000009888)	ENSATEG00000009902	ENSATEG00000009939	ENSATEG00000009959	ENSATEG00000009993	ENSATEG00000010000	ENSATEG00000025294	ENSATEG00000010131	ENSATEG00000029278	ENSATEG00000010244
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000013606	ENSBSLG00000013556	ENSBSLG00000013544	CCDC134 (ENSBSLG00000013513) #15	ENSBSLG00000013505	srebf2 (ENSBSLG00000013284) #16	nol12 (ENSBSLG00000013241)	triobpb (ENSBSLG00000013145)	ndufa6 (ENSBSLG00000013079) #25	ENSBSLG00000013038	fam234b (ENSBSLG00000012211)	ENSBSLG00000012197	POLDIP3 (ENSBSLG00000012169) #36	rrp7a (ENSBSLG00000012148) #35	ENSBSLG00000012117	wbp2nl (ENSBSLG00000012089) #22	ENSBSLG00000012055	FMC1 (ENSBSLG00000012041)	ENSBSLG00000012027	ENSBSLG00000012005 #32	GSG1 (ENSBSLG00000011974)	emp1 (ENSBSLG00000011935)	ENSBSLG00000011882	ENSBSLG00000011700	ENSBSLG00000011271	ENSBSLG00000011266	ENSBSLG00000011252	PLEKHF1 (ENSBSLG00000011247)	PLEKHF1 (ENSBSLG00000011245)	wbp11 (ENSBSLG00000011216)	ddx47 (ENSBSLG00000010742)
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000009822	ENSMAMG00000009813	ENSMAMG00000009789	trir (ENSMAMG00000009782)	ubn2b (ENSMAMG00000009736)	hook2 (ENSMAMG00000009671)	junbb (ENSMAMG00000025546)	rtbdn (ENSMAMG00000009461)	MAST1 (ENSMAMG00000009392)	ENSMAMG00000009380	ENSMAMG00000009256	ENSMAMG00000009228	fam234b (ENSMAMG00000009213)	ENSMAMG00000009151	rrp7a (ENSMAMG00000009125) #35	wbp2nl (ENSMAMG00000009102) #22	ENSMAMG00000009094	ENSMAMG00000028475	ENSMAMG00000009043	ENSMAMG00000009035 #32	GSG1 (ENSMAMG00000009024)	EMP1 (ENSMAMG00000009018)	ENSMAMG00000028391	ENSMAMG00000008980	ENSMAMG00000008972	ENSMAMG00000008967	ENSMAMG00000008946	ENSMAMG00000008937	ENSMAMG00000024500	ENSMAMG00000025942	ENSMAMG00000008915
Tiger tail seahorse	MODERN SPECIES	180	sox10 (ENSHCOG00000006129)	KCNJ4 (ENSHCOG00000006101)	kdelr3 (ENSHCOG00000006025)	ENSHCOG00000006015	ENSHCOG00000006010 #15	ENSHCOG00000006006	srebf2 (ENSHCOG00000005996) #16	nol12 (ENSHCOG00000005941)	triobpb (ENSHCOG00000005934)	ndufa6 (ENSHCOG00000005920) #25	SMDT1 (ENSHCOG00000005870)	fam234b (ENSHCOG00000005859)	POLDIP3 (ENSHCOG00000005823) #36	rrp7a (ENSHCOG00000005813) #35	ENSHCOG00000005810	wbp2nl (ENSHCOG00000005799) #22	ENSHCOG00000005788	FMC1 (ENSHCOG00000005778)	GRIN2B (ENSHCOG00000005770)	ENSHCOG00000005736 #32	GSG1 (ENSHCOG00000005716)	emp1 (ENSHCOG00000005686)	ENSHCOG00000005675	ENSHCOG00000005662	GPRC5D (ENSHCOG00000005648)	ENSHCOG00000005638	mgp (ENSHCOG00000005572)	ENSHCOG00000005565	ENSHCOG00000005553	ENSHCOG00000005536	wbp11 (ENSHCOG00000005519)
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005004615	kdelr3 (ENSMMDG00005004586)	ENSMMDG00005004578	ENSMMDG00005004575 #14	CCDC134 (ENSMMDG00005004568) #15	ENSMMDG00005004565	srebf2 (ENSMMDG00005004459) #16	nol12 (ENSMMDG00005004425)	triobpb (ENSMMDG00005004416)	ndufa6 (ENSMMDG00005004406) #25	ENSMMDG00005004401	fam234b (ENSMMDG00005004384)	POLDIP3 (ENSMMDG00005004373) #36	rrp7a (ENSMMDG00005004359) #35	ENSMMDG00005004345	wbp2nl (ENSMMDG00005004334) #22	ENSMMDG00005004327	FMC1 (ENSMMDG00005004323)	GRIN2B (ENSMMDG00005004305)	ENSMMDG00005004294 #32	EMP1 (ENSMMDG00005004284)	ENSMMDG00005004264	ENSMMDG00005004248	ENSMMDG00005004233	GPRC5D (ENSMMDG00005004221)	ENSMMDG00005004217	ENSMMDG00005004208	ENSMMDG00005004201	ENSMMDG00005004193	ddx47 (ENSMMDG00005004136)	ENSMMDG00005023118
Cod	MODERN SPECIES	11	ENSGMOG00000031685	ENSGMOG00000034947	ENSGMOG00000029532	ENSGMOG00000026389	ENSGMOG00000023873	ENSGMOG00000026472	srebf2 (ENSGMOG00000006325) #16	nol12 (ENSGMOG00000006313)	triobpb (ENSGMOG00000026665)	ndufa6 (ENSGMOG00000006274) #25	fam234b (ENSGMOG00000006253)	ENSGMOG00000020459	ENSGMOG00000006232 #36	rrp7a (ENSGMOG00000006218) #35	ENSGMOG00000005984	wbp2nl (ENSGMOG00000005966) #22	ENSGMOG00000005933	ENSGMOG00000023638	ENSGMOG00000005883	ENSGMOG00000025621 #32	ENSGMOG00000026062	ENSGMOG00000005872	ENSGMOG00000027645	ENSGMOG00000027662	ENSGMOG00000026419	ENSGMOG00000033098	ENSGMOG00000031959	ENSGMOG00000032849	ENSGMOG00000034221	ENSGMOG00000009271	ENSGMOG00000034975
Protacanthopterygii	ANCESTRAL SPECIES	5	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT01000000221757	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324.h.b	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a	ENSGT00390000012258	ENSGT00530000063707.a.j	ENSGT00940000155964.g.c	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT01000000214705	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a	ENSGT00940000155774.b	ENSGT00940000155159.C
Salmoninae	ANCESTRAL SPECIES															ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a.d	ENSGT00390000012258.d.b	ENSGT00940000163377.a.a.c	ENSGT00390000012258.d.a	ENSGT00530000063707.a.j.a	ENSGT00940000155964.g.d	ENSGT00940000155964.g.c.a	ENSGT00940000157896.m.b #32	ENSGT01050000244814.a.a.a.b.b.a	ENSGT00940000157896.m.a #32	ENSGT01000000216011.c	ENSGT00950000182696.A.a.a.b.a	ENSGT00940000155083.a.a	ENSGT00940000157534.a.b.b.b.a	ENSGT00950000182961.a.b.b.d
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1598	ENSHHUG00000035010	ENSHHUG00000035005 #14	ENSHHUG00000034997 #14	ENSHHUG00000034990 #14	CCDC134 (ENSHHUG00000034986) #15	ENSHHUG00000034984	srebf2 (ENSHHUG00000034943) #16	nol12 (ENSHHUG00000034924)	triobpb (ENSHHUG00000034917)	ndufa6 (ENSHHUG00000034902) #25	ENSHHUG00000034897	fam234b (ENSHHUG00000034887)	POLDIP3 (ENSHHUG00000034814) #36	rrp7a (ENSHHUG00000034805) #35	ENSHHUG00000034799	wbp2nl (ENSHHUG00000034795) #22	ENSHHUG00000034793	FMC1 (ENSHHUG00000034790)	ENSHHUG00000034785	ENSHHUG00000034781	ENSHHUG00000034776	ENSHHUG00000034771	ENSHHUG00000034764	ENSHHUG00000034758	CARM1 (ENSHHUG00000034755)
Huchen	MODERN SPECIES	192	ENSHHUG00000037167	ENSHHUG00000037154	ENSHHUG00000037143 #14	CCDC134 (ENSHHUG00000037141) #15	ENSHHUG00000037138	srebf2 (ENSHHUG00000037085) #16	nol12 (ENSHHUG00000037071)	triobpb (ENSHHUG00000037063)	ENSHHUG00000037056	ndufa6 (ENSHHUG00000037037) #25	ENSHHUG00000037033	fam234b (ENSHHUG00000036994)	POLDIP3 (ENSHHUG00000036982) #36	rrp7a (ENSHHUG00000036963) #35	ENSHHUG00000036955	wbp2nl (ENSHHUG00000036898) #22	ENSHHUG00000036893	FMC1 (ENSHHUG00000036888)	ENSHHUG00000036876	GRIN2B (ENSHHUG00000036861)
Salmoninae_a	ANCESTRAL SPECIES	37									ENSGT00940000157340.k.b.d	ENSGT00390000018898 #25	ENSGT01000000221757	ENSGT00530000063694.b.a	ENSGT00390000018868.A.q #36	ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e.a	ENSGT00530000063718.a.b #22	ENSGT00940000163377.a.a.d	ENSGT00390000012258.d.b	ENSGT00940000155964.g.c.a	ENSGT00940000157896.m.a #32	ENSGT01000000216011.c	ENSGT00950000182696.A.a.a.b.a	ENSGT00940000157534.a.b.b.b.b	ENSGT00950000182961.a.b.b.c	ENSGT00390000013260.A.b.b.o	ENSGT00390000003753.g	ENSGT00710000107036.a.a.a	ENSGT00940000162350.b.b.a	ENSGT00940000155774.b.b	ENSGT00940000155159.C.cd	ENSGT00390000012078.a.b.d.b
Oncorhynchus	DUPLICATION
Oncorhynchus	DUPLICATION
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT00390000004010.a.b.b.k.b.a	ENSGT01100000263538.A.a.a.b.a.c.b.c	ENSGT00940000163984.A.g.a.a	ENSGT00390000002077 #14	ENSGT00390000020164.j #15	ENSGT00940000166743.h.b	ENSGT00940000157339.q #16	ENSGT00390000015973.a	ENSGT00940000157340.k.b.d	ENSGT00390000018898.h #25	ENSGT00530000063694.b.b	ENSGT00390000018868.A.q.a #36	ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e.a	ENSGT00530000063718.a.b.i.b #22	ENSGT00530000063718.a.b.i.a.a #22	ENSGT00940000163377.a.a.c	ENSGT00390000012258.d.a	ENSGT00530000063707.a.j.a	ENSGT00940000155964.g.d	ENSGT01000000216011.d	ENSGT00950000182696.A.a.a.b.b	ENSGT00940000155083.a.b	ENSGT00940000157534.a.b.b.b.b	ENSGT00950000182961.a.b.b.c.a	ENSGT00390000013260.A.b.b.o.a	ENSGT00390000003753.g.a	ENSGT00710000107036.a.a.b.b	ENSGT01010000222553	ENSGT00940000162350.b.b.b	ENSGT00940000162350.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	79	ENSGT01100000263538.A.a.a.b.a.c.b.c	ENSGT00940000163984.A.g.a.a	ENSGT00390000002077 #14	ENSGT00390000020164.j #15	ENSGT00940000166743.h.b	ENSGT00940000157339.q #16	ENSGT00390000015973.a	ENSGT00940000157340.k.b.d	ENSGT00390000018898.g.b #25	ENSGT00390000017489.b.l	ENSGT00530000063694.b.b	ENSGT00390000018868.A.q.a #36	ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e.a	ENSGT00530000063718.a.b.i.b #22	ENSGT00530000063718.a.b.i.a.a #22	ENSGT00940000163377.a.a.c	ENSGT00390000012258.d.a	ENSGT00530000063707.a.j.a	ENSGT00940000155964.g.d
Chinook salmon	MODERN SPECIES	19	polr2f (ENSOTSG00005036914)	sox10 (ENSOTSG00005036915)	cyb561 (ENSOTSG00005036916)	HDAC5 (ENSOTSG00005036949)	lsm12a (ENSOTSG00005042062)	ENSOTSG00005042063	ENSOTSG00005042064	srebf2 (ENSOTSG00005042066) #16	nol12 (ENSOTSG00005042067)	ENSOTSG00005042068	ndufa6 (ENSOTSG00005042069) #25	ENSOTSG00005002571	fam234b (ENSOTSG00005002644)	POLDIP3 (ENSOTSG00005002822) #36	rrp7a (ENSOTSG00005002835) #35	wbp2nl (ENSOTSG00005002846) #22	ENSOTSG00005002856	ENSOTSG00005002860	ENSOTSG00005002862	mfsd11 (ENSOTSG00005002876)	srsf2b (ENSOTSG00005002961)	ENSOTSG00005002974	jmjd6 (ENSOTSG00005002979)	ENSOTSG00005002995	ST6GALNAC2 (ENSOTSG00005003002)	bri3 (ENSOTSG00005003353)	ENSOTSG00005003354	ENSOTSG00005003356	ENSOTSG00005003359	med25 (ENSOTSG00005003364)	LRRC4B (ENSOTSG00005003371)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000060879	ENSOMYG00000012977	ENSOMYG00000072376	ENSOMYG00000013002	ENSOMYG00000013035 #15	ENSOMYG00000013049	srebf2 (ENSOMYG00000013104) #16	nol12 (ENSOMYG00000013195)	triobpb (ENSOMYG00000013227)	ndufa6 (ENSOMYG00000013264) #25	ENSOMYG00000013274	fam234b (ENSOMYG00000013282)	ENSOMYG00000013309 #36	rrp7a (ENSOMYG00000013338) #35	ENSOMYG00000013350	wbp2nl (ENSOMYG00000013363) #22	ENSOMYG00000051197	ENSOMYG00000013378	ENSOMYG00000061319	ENSOMYG00000057395	ENSOMYG00000013396	ENSOMYG00000013415 #32	ENSOMYG00000065569	EMP1 (ENSOMYG00000013423)	ENSOMYG00000013495	ENSOMYG00000013447	ENSOMYG00000013504	ENSOMYG00000013519	ENSOMYG00000061797	ENSOMYG00000013549	ENSOMYG00000013558
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00530000063718.a.b.i.a.b #22
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000045325	sox10 (ENSOMYG00000045323)	ENSOMYG00000045322	ENSOMYG00000045315	ENSOMYG00000045320	ENSOMYG00000045309	ENSOMYG00000045292 #15	ENSOMYG00000066038	srebf2 (ENSOMYG00000045273) #16	nol12 (ENSOMYG00000045265)	ENSOMYG00000045264	ndufa6 (ENSOMYG00000045258) #25	fam234b (ENSOMYG00000045252)	ENSOMYG00000045246 #36	ENSOMYG00000045237	wbp2nl (ENSOMYG00000045235) #22	ENSOMYG00000045232	ENSOMYG00000045230	ENSOMYG00000076586	ENSOMYG00000035663	ENSOMYG00000045211	ENSOMYG00000014237	ENSOMYG00000045189 #32	ENSOMYG00000045187	ENSOMYG00000045180	ENSOMYG00000045167	ENSOMYG00000045160	ENSOMYG00000054605	ENSOMYG00000045152	ENSOMYG00000045148	ENSOMYG00000045142
Oncorhynchus	ANCESTRAL SPECIES	37	ENSGT01030000234586.A.b.b.f	ENSGT00390000004010.a.b.b.k.b.a	ENSGT01100000263538.A.a.a.b.a.c.b.c	ENSGT00940000163984.A.g.a.a	ENSGT00390000002077 #14	ENSGT00390000020164.j #15	ENSGT00940000166743.h.b	ENSGT00940000157339.q #16	ENSGT00390000015973.a	ENSGT00940000157340.k.b.d	ENSGT00390000018898.h #25	ENSGT00530000063694.b.b	ENSGT00390000018868.A.q.a #36	ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e.a	ENSGT00530000063718.a.b.i.b #22	ENSGT00530000063718.a.b.i.a.a #22	ENSGT00940000163377.a.a.c	ENSGT00390000012258.d.a	ENSGT00530000063707.a.j.a	ENSGT00940000155964.g.d	ENSGT01000000216011.d	ENSGT00950000182696.A.a.a.b.b	ENSGT00940000155083.a.b	ENSGT00940000157534.a.b.b.b.b	ENSGT00950000182961.a.b.b.c.a	ENSGT00390000013260.A.b.b.o.a	ENSGT00390000003753.g.a	ENSGT00710000107036.a.a.b.b	ENSGT01010000222553	ENSGT00940000162350.b.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	79	ENSGT00390000004010.a.b.b.l	ENSGT01100000263538.A.a.a.b.a.c.b.c	ENSGT00940000163984.A.g.a.a	ENSGT00390000002077 #14	ENSGT00390000020164.j #15	ENSGT00940000166743.h.b	ENSGT00940000157339.q #16	ENSGT00390000015973.a	ENSGT00940000157340.k.b.d	ENSGT00390000018898.g.b #25	ENSGT00390000017489.b.l	ENSGT00530000063694.b.b	ENSGT00390000018868.A.q.a #36	ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e.a	ENSGT00530000063718.a.b.i.b #22	ENSGT00530000063718.a.b.i.a.a #22	ENSGT00940000163377.a.a.c	ENSGT00390000012258.d.a	ENSGT00530000063707.a.j.a	ENSGT00940000155964.g.d
Coho salmon	MODERN SPECIES	1	KDELR3 (ENSOKIG00005018430)	ENSOKIG00005018454	ENSOKIG00005018459	ENSOKIG00005018475 #14	CCDC134 (ENSOKIG00005018505) #15	ENSOKIG00005018525	srebf2 (ENSOKIG00005018550) #16	nol12 (ENSOKIG00005018635)	triobpb (ENSOKIG00005018662)	ndufa6 (ENSOKIG00005018713) #25	ENSOKIG00005018727	fam234b (ENSOKIG00005018738)	POLDIP3 (ENSOKIG00005018750) #36	rrp7a (ENSOKIG00005018776) #35	ENSOKIG00005018795	wbp2nl (ENSOKIG00005018818) #22	ENSOKIG00005018829	ENSOKIG00005018835	ENSOKIG00005001946	ENSOKIG00005001981	ENSOKIG00005001989	RFX1 (ENSOKIG00005002035)	KHSRP (ENSOKIG00005002280)	ENSOKIG00005002320	ADAP2 (ENSOKIG00005002327)	rhot1a (ENSOKIG00005002611)	zgc:153240 (ENSOKIG00005004008)	ENSOKIG00005004024	ENSOKIG00005004029	ENSOKIG00005004049	GRIN2B (ENSOKIG00005004091)
Oncorhynchus	ANCESTRAL SPECIES	48	ENSGT01100000263538.A.a.a.b.a.c.b.d	ENSGT00940000163984.A.g.a.b	ENSGT00390000020164.i #15	ENSGT00940000166743.h.a	ENSGT00940000157339.r #16	ENSGT00390000015973.b	ENSGT00940000157340.k.b.c	ENSGT00390000018898.g #25	ENSGT00390000017489.b.l	ENSGT00530000063694.b.a	ENSGT00390000018868.A.q.b #36	ENSGT00390000018482.r #35	ENSGT00390000018868.A.r.b #36	ENSGT00390000018482.q.a #35	ENSGT00940000161324.h.b.f	ENSGT00530000063718.a.b.j #22	ENSGT00940000163377.a.a.d	ENSGT00390000012258.d.b	ENSGT00530000063707.a.j.b	ENSGT00940000155964.g.c.b.b	ENSGT00940000157896.m.b #32	ENSGT01050000244814.a.a.a.b.b.a	ENSGT01000000216011.c	ENSGT00950000182696.A.a.a.b.a	ENSGT00940000155083.a.a.c	ENSGT00940000157534.a.b.b.b.a	ENSGT00950000182961.a.b.b.c.b	ENSGT00390000013260.A.b.b.o.b	ENSGT00390000003753.g.b	ENSGT00710000107036.a.a.a	ENSGT00940000162350.b.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	44	ENSGT01100000263538.A.a.a.b.a.c.b.d	ENSGT00940000163984.A.g.a.b	ENSGT00390000020164.i #15	ENSGT00940000166743.h.a	ENSGT00940000157339.r #16	ENSGT00390000015973.b	ENSGT00940000157340.k.b.c	ENSGT00390000018898.g.a #25	ENSGT01000000221757	ENSGT00530000063694.b.a	ENSGT00390000018868.A.q.b #36	ENSGT00390000018482.r #35	ENSGT00390000018868.A.r.b #36	ENSGT00390000018482.q.a #35	ENSGT00940000161324.h.b.f	ENSGT00530000063718.a.b.j #22	ENSGT00940000163377.a.a.d	ENSGT00390000012258.d.b	ENSGT00530000063707.a.j.b	ENSGT00940000155964.g.c.b.b	ENSGT00940000157896.m.b #32	ENSGT01000000216011.c	ENSGT00950000182696.A.a.a.b.a	ENSGT00940000161324.h.a.a	ENSGT00940000155083.a.a.c	ENSGT00940000157534.a.b.b.b.a	ENSGT00950000182961.a.b.b.c.a	ENSGT00390000013260.A.b.b.o.b	ENSGT00390000003753.g.a	ENSGT00710000107036.a.a.b.b	ENSGT01010000222553
Coho salmon	MODERN SPECIES	26	KDELR3 (ENSOKIG00005011747)	ENSOKIG00005011763	ENSOKIG00005011768	ENSOKIG00005011773	CCDC134 (ENSOKIG00005011788) #15	ENSOKIG00005011803	srebf2 (ENSOKIG00005011836) #16	nol12 (ENSOKIG00005011947)	triobpb (ENSOKIG00005011977)	ndufa6 (ENSOKIG00005011992) #25	SMDT1 (ENSOKIG00005012008)	fam234b (ENSOKIG00005012018)	ENSOKIG00005012032 #36	rrp7a (ENSOKIG00005012058) #35	ENSOKIG00005012071	wbp2nl (ENSOKIG00005012079) #22	ENSOKIG00005012087	ENSOKIG00005012094	ENSOKIG00005012101	GRIN2B (ENSOKIG00005012113)	ENSOKIG00005012168 #32	ENSOKIG00005012224	emp1 (ENSOKIG00005012247)	ENSOKIG00005012277	ENSOKIG00005012313	ENSOKIG00005012332	ENSOKIG00005012347	ENSOKIG00005012355	ENSOKIG00005012373	mgp (ENSOKIG00005012376)	ENSOKIG00005001703
Chinook salmon	MODERN SPECIES	33	kdelr3 (ENSOTSG00005001254)	ENSOTSG00005001278	ENSOTSG00005001188	ENSOTSG00005001158 #14	CCDC134 (ENSOTSG00005001153) #15	ENSOTSG00005001146	srebf2 (ENSOTSG00005001136) #16	nol12 (ENSOTSG00005001127)	triobpb (ENSOTSG00005001119)	ndufa6 (ENSOTSG00005001113) #25	ENSOTSG00005001111	fam234b (ENSOTSG00005001105)	POLDIP3 (ENSOTSG00005001091) #36	rrp7a (ENSOTSG00005001085) #35	ENSOTSG00005001071	wbp2nl (ENSOTSG00005001059) #22	ENSOTSG00005001052	FMC1 (ENSOTSG00005000809)	ENSOTSG00005047837	GRIN2B (ENSOTSG00005047836)	ENSOTSG00005047835 #32	ENSOTSG00005047834 #32	ENSOTSG00005047832	EMP1 (ENSOTSG00005047831)	ENSOTSG00005047829	ENSOTSG00005047828	ENSOTSG00005047827	mgp (ENSOTSG00005047826)	ENSOTSG00005047825	ENSOTSG00005047824	ENSOTSG00005047823
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	53	ENSGT00390000020164.h #15	ENSGT00940000166743.h.a	ENSGT00940000157339.p #16	ENSGT00390000015973.b	ENSGT00940000157340.k.b.d	ENSGT00390000018898 #25	ENSGT00390000017489.b.j	ENSGT00530000063694.b.b	ENSGT00390000018868.A.r.a #36	ENSGT00390000018482.q.a #35	ENSGT00940000161324.h.b.e.b	ENSGT00530000063694.b.a.a	ENSGT00390000018868.A.q #36	ENSGT00390000018482.q.b #35	ENSGT00940000161324.h.b.e.a	ENSGT00530000063718.a.b.k #22	ENSGT00940000163377.a.a.c	ENSGT00530000063707.a.j.a	ENSGT00940000155964.g.c.b.a	ENSGT01050000244814.a.a.a.b.a	ENSGT00950000182696.A.a.a.b.b	ENSGT01000000214705.d	ENSGT00940000155083.a.b	ENSGT00940000157534.a.b.a.b	ENSGT00950000182961.a.b.b.c	ENSGT00390000013260.A.b.b.o	ENSGT00390000013260.A.b.b.p.a.b	ENSGT00390000003753.h.b	ENSGT00710000107036.a.a.b.a.b	ENSGT00940000162350.b.b.a	ENSGT00940000155774.b.a
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000069275	ENSSSAG00000122044	ENSSSAG00000069308	ENSSSAG00000084225	ENSSSAG00000103582	ENSSSAG00000090266	ENSSSAG00000088716 #14	ENSSSAG00000104474	srebf2 (ENSSSAG00000069349) #16	triobpb (ENSSSAG00000110228)	ndufa6 (ENSSSAG00000060815) #25	fam234b (ENSSSAG00000060676)	ENSSSAG00000039497 #36	rrp7a (ENSSSAG00000039601) #35	ENSSSAG00000090102	wbp2nl (ENSSSAG00000116692) #22	ENSSSAG00000084568	ENSSSAG00000059751	ENSSSAG00000109206 #32	ENSSSAG00000112212 #32	ENSSSAG00000095185	ENSSSAG00000107900	ENSSSAG00000120174	CD9 (ENSSSAG00000059637)	ENSSSAG00000082017	ENSSSAG00000059823	ENSSSAG00000059883	ENSSSAG00000115660	bglap (ENSSSAG00000060615)	ENSSSAG00000060545	ENSSSAG00000099487
River trout	MODERN SPECIES		KDELR3 (ENSSTUG00000033014)	ENSSTUG00000033022	ENSSTUG00000033028	MEI1 (ENSSTUG00000033042) #14	CCDC134 (ENSSTUG00000033072) #15	ENSSTUG00000033086	srebf2 (ENSSTUG00000033093) #16	nol12 (ENSSTUG00000033190)	triobpb (ENSSTUG00000033208)	ndufa6 (ENSSTUG00000033222) #25	ENSSTUG00000033230	fam234b (ENSSTUG00000033242)	POLDIP3 (ENSSTUG00000033265) #36	rrp7a (ENSSTUG00000033280) #35	ENSSTUG00000033283	wbp2nl (ENSSTUG00000033307) #22	ENSSTUG00000033318	ENSSTUG00000033326	GRIN2B (ENSSTUG00000033340)	GSG1 (ENSSTUG00000033454)	EMP1 (ENSSTUG00000033456)	ENSSTUG00000033487	ENSSTUG00000033515	ENSSTUG00000033571	ENSSTUG00000033651	ENSSTUG00000033669	ENSSTUG00000033706	ENSSTUG00000033717	ENSSTUG00000033739	ENSSTUG00000033755	ddx47 (ENSSTUG00000033785)
Salmo	ANCESTRAL SPECIES	69														ENSGT00940000161324.h.b.f	ENSGT00390000018482.r #35	ENSGT00530000063718.a.b.l #22	ENSGT00940000163377.a.a.d	ENSGT00390000012258.c	ENSGT00530000063707.a.j.b	ENSGT00940000155964.g.c.a	ENSGT00940000157896.m.b #32	ENSGT00940000157896.m.a #32	ENSGT00950000182696.A.a.a.b.a	ENSGT01000000214705.c	ENSGT00940000155083.a.a	ENSGT00940000157534.a.b.a.a	ENSGT00950000182961.a.b.b.d	ENSGT00390000013260.A.b.b.p.a.a	ENSGT00390000003753.h.a	ENSGT00710000107036.a.a.b.a.a	ENSGT00940000162350.b.b.b
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000000735	ENSSSAG00000069313	ENSSSAG00000000729	ENSSSAG00000111587	ENSSSAG00000000703 #15	ENSSSAG00000084774	srebf2 (ENSSSAG00000000667) #16	nol12 (ENSSSAG00000069563)	triobpb (ENSSSAG00000037766)	ndufa6 (ENSSSAG00000038779) #25	ENSSSAG00000120491	fam234b (ENSSSAG00000039086)	ENSSSAG00000039159 #36	rrp7a (ENSSSAG00000039300) #35	ENSSSAG00000098063	wbp2nl (ENSSSAG00000097848) #22	ENSSSAG00000101032	ENSSSAG00000000555	ENSSSAG00000000524	ENSSSAG00000099900 #32	ENSSSAG00000000360	ENSSSAG00000104080	ENSSSAG00000079944	cd9 (ENSSSAG00000079939)	ENSSSAG00000079926	ENSSSAG00000092394	ENSSSAG00000079917	ENSSSAG00000079904	ENSSSAG00000079889	ENSSSAG00000079885	ENSSSAG00000079880
River trout	MODERN SPECIES	25	ENSSTUG00000036519	KDELR3 (ENSSTUG00000036523)	ENSSTUG00000036533	ENSSTUG00000036538	ENSSTUG00000036561 #15	ENSSTUG00000036594	srebf2 (ENSSTUG00000036608) #16	nol12 (ENSSTUG00000036847)	triobpb (ENSSTUG00000003830)	ndufa6 (ENSSTUG00000003865) #25	ENSSTUG00000003907	fam234b (ENSSTUG00000003919)	POLDIP3 (ENSSTUG00000003953) #36	rrp7a (ENSSTUG00000003982) #35	ENSSTUG00000004050	wbp2nl (ENSSTUG00000004122) #22	ENSSTUG00000004151	FMC1 (ENSSTUG00000004194)	ENSSTUG00000004217	ENSSTUG00000004279	GRIN2B (ENSSTUG00000004282)	ENSSTUG00000004320 #32	EMP1 (ENSSTUG00000004331)	ENSSTUG00000004361	ENSSTUG00000004391	ENSSTUG00000004414	ENSSTUG00000004448	ENSSTUG00000004473	ENSSTUG00000004480	ENSSTUG00000004492	ENSSTUG00000004504
Northern pike	MODERN SPECIES	10	KCNJ4 (ENSELUG00000008577)	ENSELUG00000008582	ENSELUG00000008612	kdelr3 (ENSELUG00000008631)	CCDC134 (ENSELUG00000008759) #15	ENSELUG00000008788	srebf2 (ENSELUG00000008812) #16	nol12 (ENSELUG00000008885)	triobpb (ENSELUG00000008911)	ndufa6 (ENSELUG00000031546) #25	ENSELUG00000034073	fam234b (ENSELUG00000008971)	POLDIP3 (ENSELUG00000009005) #36	rrp7a (ENSELUG00000009036) #35	ENSELUG00000009083	wbp2nl (ENSELUG00000009124) #22	ENSELUG00000009150	fmc1 (ENSELUG00000032652)	ENSELUG00000009238	GRIN2B (ENSELUG00000009285)	ENSELUG00000031477 #32	GSG1 (ENSELUG00000009349)	emp1 (ENSELUG00000034196)	ENSELUG00000027548	ENSELUG00000009404	ENSELUG00000009415	ENSELUG00000009429	mgp (ENSELUG00000025140)	ENSELUG00000009458	wbp11 (ENSELUG00000009477)	ENSELUG00000009465
Otomorpha	ANCESTRAL SPECIES	19	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT01010000222553	ENSGT00940000155774.b	ENSGT00940000155159.C
Otophysi	ANCESTRAL SPECIES	120	ENSGT01030000234586.A.b.b	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743.j	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000171928	ENSGT00940000162350.b.a	ENSGT00940000155774.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT01010000222553
Characiphysae	ANCESTRAL SPECIES	130	ENSGT01030000234586.A.b.b	ENSGT00390000004010.a.b.b	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743.j	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.b	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000171928	ENSGT00940000162350.b.a	ENSGT00940000155774.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT01010000222553
Channel catfish	MODERN SPECIES	3	ENSIPUG00000000784 #14	ENSIPUG00000000777 #14	ccdc134 (ENSIPUG00000000750) #15	ENSIPUG00000000747	ENSIPUG00000000728	ENSIPUG00000000721	ENSIPUG00000000716	srebf2 (ENSIPUG00000000677) #16	nol12 (ENSIPUG00000000672)	triobpb (ENSIPUG00000000663)	ndufa6 (ENSIPUG00000000656) #25	smdt1 (ENSIPUG00000000659)	fam234b (ENSIPUG00000000604)	ENSIPUG00000000564 #36	rrp7a (ENSIPUG00000000556) #35	WBP2 (ENSIPUG00000023843) #22	fmc1 (ENSIPUG00000023846)	ENSIPUG00000023842	ENSIPUG00000023837	GRIN2B (ENSIPUG00000023830)	tcf20 (ENSIPUG00000023827) #32	ENSIPUG00000023825	ENSIPUG00000023823	ENSIPUG00000023821	EMP2 (ENSIPUG00000023817)	ENSIPUG00000023811	ENSIPUG00000023809	mgp (ENSIPUG00000023807)	ENSIPUG00000023803	wbp11 (ENSIPUG00000023798)	ddx47 (ENSIPUG00000023788)
Characiphysae_b	ANCESTRAL SPECIES	186							ENSGT00940000166743.j	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.b	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000171928	ENSGT00940000157534.b	ENSGT00940000162350.b.a	ENSGT00940000155774.b
Characoidei	ANCESTRAL SPECIES	228							ENSGT00940000166743.j	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.b	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896.ib.a #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000171928	ENSGT00940000157534.b	ENSGT00940000162350.b.b	ENSGT00940000155774.b
Mexicana tetra	MODERN SPECIES	1322														POLDIP3 (ENSAMXG00000007939) #36	rrp7a (ENSAMXG00000007921) #35	wbp2nl (ENSAMXG00000032890) #22	ENSAMXG00000033876	ENSAMXG00000034081	GRIN2B (ENSAMXG00000040741)	ENSAMXG00000036037 #32	ENSAMXG00000043374 #32	ENSAMXG00000038904	EMP1 (ENSAMXG00000041659)	ENSAMXG00000038480
Red-bellied piranha	MODERN SPECIES	33	ENSPNAG00000014792	AMY1B (ENSPNAG00000003252)	ahsa1b (ENSPNAG00000014752)	ENSPNAG00000014727	JMJD1C (ENSPNAG00000014702)	ENSPNAG00000014648	NRBF2 (ENSPNAG00000014632)	EGR2 (ENSPNAG00000014627)	adob (ENSPNAG00000014619)	ZNF365 (ENSPNAG00000014614)	rtkn2 (ENSPNAG00000014595)	ENSPNAG00000014516	zfyve28 (ENSPNAG00000014497)	NT5C1A (ENSPNAG00000003111)	rrp7a (ENSPNAG00000014376) #35	wbp2nl (ENSPNAG00000014353) #22	ENSPNAG00000014344	ENSPNAG00000003083	GRIN2B (ENSPNAG00000014329)	ENSPNAG00000003069 #32	ENSPNAG00000014254	EMP1 (ENSPNAG00000003061)	ENSPNAG00000003048	ENSPNAG00000014196
Electric eel	MODERN SPECIES	1762																wbp2nl (ENSEEEG00000002953) #22
Cyprinoidei	ANCESTRAL SPECIES	178						ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT01100000263538.A.a.a.a.g.c.b	ENSGT00390000015973	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00940000155964.g	ENSGT00940000157896.gb #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	404	ENSGT00940000157339.cb #16	ENSGT00940000157340.k.b.f	ENSGT00390000015973	ENSGT00940000157340.k.b.e	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00390000017489.b.p	ENSGT00530000063694.b	ENSGT00390000018868.A.l #36	ENSGT00940000155964.g.b	ENSGT00940000157896.fb #32	ENSGT00950000182696.A.a.a.b.c	ENSGT00940000155083.a.e	ENSGT00390000018868.A.k #36	ENSGT00390000018482 #35	ENSGT00530000063718.a.b.m #22	ENSGT00390000012258	ENSGT01100000263473.b.a.a.a.a.a.b.b.b.b	ENSGT00940000155964.g.a	ENSGT00940000157896.gb #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b.d	ENSGT00940000155083.a.f	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT00940000162350.b.b
Cyprininae_a	ANCESTRAL SPECIES	435									ENSGT01100000263538.A.a.a.a.g.c.b.c.a.a.a.a.a.a	ENSGT00390000001745.b.b.b.a.b.b.a.b.b.b.a.a	ENSGT00940000166743.j.a	ENSGT00940000157339.bb.a #16	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00390000018482 #35	ENSGT00530000063718.a.b.m #22	ENSGT00390000012258	ENSGT01100000263473.b.a.a.a.a.a.b.b.b.b	ENSGT00940000155964.g.a	ENSGT00940000157896.gb #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b.d	ENSGT00940000155083.a.f	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.b.g	ENSGT00390000003753.e	ENSGT01010000222553	ENSGT00940000155774.a.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1385															rrp7a (ENSSGRG00000025554) #35	wbp2nl (ENSSGRG00000025553) #22	ENSSGRG00000025552	wbp2nl (ENSSGRG00000025551) #22	ENSSGRG00000025550	ENSSGRG00000025549	GRIN2B (ENSSGRG00000025548)	ENSSGRG00000025547 #32	ENSSGRG00000025545	ENSSGRG00000025544	ENSSGRG00000025543	ENSSGRG00000025542	mgp (ENSSGRG00000025541)
Golden-line barbel	MODERN SPECIES	1385													rrp7a (ENSSGRG00000025554) #35	wbp2nl (ENSSGRG00000025553) #22	ENSSGRG00000025552	wbp2nl (ENSSGRG00000025551) #22	ENSSGRG00000025550	ENSSGRG00000025549	GRIN2B (ENSSGRG00000025548)	ENSSGRG00000025547 #32	ENSSGRG00000025545	ENSSGRG00000025544	ENSSGRG00000025543	ENSSGRG00000025542	mgp (ENSSGRG00000025541)
Common carp reference	MODERN SPECIES	3	ENSCCRG00000042430	ENSCCRG00000061110	ENSCCRG00000005738	ENSCCRG00000080067	ENSCCRG00000081947	ENSCCRG00000029145	ENSCCRG00000060607	ENSCCRG00000072810	ENSCCRG00000004346	ENSCCRG00000070233	ENSCCRG00000063738	ENSCCRG00000058450 #16	ENSCCRG00000020301 #25	ENSCCRG00000075988	rrp7a (ENSCCRG00000079272) #35	ENSCCRG00000063022 #22	ENSCCRG00000072544	ENSCCRG00000049193	ENSCCRG00000041218	ENSCCRG00000075880 #32	ENSCCRG00000082745	EMP1 (ENSCCRG00000001750)	ENSCCRG00000035514	ENSCCRG00000052593	ENSCCRG00000010896	ENSCCRG00000056894	ENSCCRG00000073380	ENSCCRG00000082354	ENSCCRG00000077884	ENSCCRG00000079161	ENSCCRG00000002030
Cyprininae	ANCESTRAL SPECIES	1414																ENSGT00530000063718.a.b.n #22	ENSGT00940000160320
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	50	ENSCARG00000056953	nol12 (ENSCARG00000056946)	triobpb (ENSCARG00000056914)	ndufa6 (ENSCARG00000056907) #25	ENSCARG00000056897	ENSCARG00000056893	fam234b (ENSCARG00000056838)	ENSCARG00000056793 #36	ENSCARG00000056784	ENSCARG00000056737	ENSCARG00000056710	ENSCARG00000056700	ENSCARG00000056695	ENSCARG00000036269	ENSCARG00000036255	wbp2nl (ENSCARG00000036242) #22	ENSCARG00000036234	ENSCARG00000036221	GRIN2B (ENSCARG00000035948)	ENSCARG00000035936 #32	EMP1 (ENSCARG00000035905)	ENSCARG00000035817	ENSCARG00000035733	ENSCARG00000035712	ENSCARG00000035704	ENSCARG00000035648	ENSCARG00000035626	ENSCARG00000035578 #36	rrp7a (ENSCARG00000035554) #35	ENSCARG00000035548	ENSCARG00000035536
Goldfish	MODERN SPECIES	150																wbp2nl (ENSCARG00000056675) #22	ENSCARG00000056714
Cyprininae_a	ANCESTRAL SPECIES	523													ENSGT00390000017489.b.p	ENSGT00530000063694.b	ENSGT00390000018868.A.l #36	ENSGT00530000063718.a.b.n #22	ENSGT00940000160320	ENSGT00940000155964.g.b	ENSGT00940000157896.fb #32	ENSGT00950000182696.A.a.a.b.c	ENSGT00940000155083.a.e	ENSGT00390000013260.A.b.a	ENSGT00390000003753.f	ENSGT00710000107036.a.a	ENSGT00940000162350.b.b
Common carp reference	MODERN SPECIES	1	ENSCCRG00000031832	ENSCCRG00000053254	ENSCCRG00000073312	ENSCCRG00000076819	ENSCCRG00000035190	ENSCCRG00000057561 #36	ENSCCRG00000070420	ENSCCRG00000073832	ENSCCRG00000082066	ENSCCRG00000078820	ENSCCRG00000061055	ENSCCRG00000078769	ENSCCRG00000050901	ENSCCRG00000056309	ENSCCRG00000063337	ENSCCRG00000063948 #22	ENSCCRG00000075277	ENSCCRG00000068923	ENSCCRG00000068252	ENSCCRG00000081759	ENSCCRG00000054612	ENSCCRG00000056755	ENSCCRG00000077838	ENSCCRG00000056823	ENSCCRG00000065163 #32	ENSCCRG00000077719	ENSCCRG00000075950	ENSCCRG00000080794	ENSCCRG00000059609	ENSCCRG00000066039	ENSCCRG00000079904
Golden-line barbel	MODERN SPECIES	1235																wbp2nl (ENSSGRG00000002341) #22	ENSSGRG00000002338
Zebrafish	MODERN SPECIES	18	zgc:172051 (ENSDARG00000086569)	ENSDARG00000079544	zgc:172253 (ENSDARG00000074191)	ENSDARG00000038405	ENSDARG00000020738	ENSDARG00000075173	srebf2 (ENSDARG00000063438) #16	ENSDARG00000095974	nol12 (ENSDARG00000038027)	triobpb (ENSDARG00000006385)	ndufa6 (ENSDARG00000038028) #25	ENSDARG00000095826	fam234b (ENSDARG00000006758)	POLDIP3 (ENSDARG00000099375) #36	rrp7a (ENSDARG00000098934) #35	wbp2nl (ENSDARG00000044852) #22	ENSDARG00000074266	ENSDARG00000078348 #32	GRIN2B (ENSDARG00000079348)	tmem106c (ENSDARG00000098105)	ENSDARG00000099949	ddx47 (ENSDARG00000102353)	ENSDARG00000101411	bglap (ENSDARG00000058414)	mgp (ENSDARG00000086189)	sox10 (ENSDARG00000077467)	polr2f (ENSDARG00000036625)	ENSDARG00000112755	ENSDARG00000114661	ENSDARG00000110635	ENSDARG00000112569
Clupeiformes	ANCESTRAL SPECIES	17	ENSGT01100000263538.A.a.a.b.a.c.b	ENSGT00940000163984.A	ENSGT00390000002077 #14	ENSGT00390000020164 #15	ENSGT00940000166743	ENSGT00940000157339 #16	ENSGT00390000015973	ENSGT00940000177881	ENSGT00940000157340.k.b	ENSGT00390000018898 #25	ENSGT00390000017489.a	ENSGT00530000063694.b	ENSGT00390000018868.A #36	ENSGT00390000018482 #35	ENSGT00940000161324	ENSGT00530000063718.a.b #22	ENSGT00940000160320	ENSGT00390000012258	ENSGT00940000155964.g	ENSGT00940000157896 #32	ENSGT01050000244814.a.a.a.b	ENSGT00950000182696.A.a.a.b	ENSGT00940000155083.a	ENSGT00940000157534.a.b	ENSGT00950000182961.a.b.b	ENSGT00390000013260.A.b.a	ENSGT00390000003753	ENSGT00710000107036.a.a	ENSGT01010000222553	ENSGT00940000162350.b.b	ENSGT00940000155774.b
Atlantic herring	MODERN SPECIES		ENSCHAG00000010545 #14	CCDC134 (ENSCHAG00000010534) #15	ENSCHAG00000010528	srebf2 (ENSCHAG00000010002) #16	nol12 (ENSCHAG00000009980)	ENSCHAG00000009961	triobpb (ENSCHAG00000009944)	ndufa6 (ENSCHAG00000009924) #25	ENSCHAG00000009920	fam234b (ENSCHAG00000009899)	ENSCHAG00000009886	zgc:158803 (ENSCHAG00000009833)	POLDIP3 (ENSCHAG00000009805) #36	rrp7a (ENSCHAG00000009767) #35	ENSCHAG00000009759	wbp2nl (ENSCHAG00000009726) #22	HEBP1 (ENSCHAG00000009721)	FMC1 (ENSCHAG00000009714)	ENSCHAG00000009700	GRIN2B (ENSCHAG00000009255)	ENSCHAG00000009224 #32	ENSCHAG00000009220	EMP1 (ENSCHAG00000009207)	ENSCHAG00000009164	ENSCHAG00000009138	GPRC5D (ENSCHAG00000009111)	ENSCHAG00000009068	mgp (ENSCHAG00000009057)	ENSCHAG00000009052	wbp11 (ENSCHAG00000009026)	ddx47 (ENSCHAG00000008466)
Denticle herring	MODERN SPECIES	17	ENSDCDG00000026660	ENSDCDG00000026657	CCDC134 (ENSDCDG00000026652) #15	ENSDCDG00000026650	srebf2 (ENSDCDG00000026547) #16	nol12 (ENSDCDG00000026544)	ENSDCDG00000026543	triobpb (ENSDCDG00000026540)	ndufa6 (ENSDCDG00000026539) #25	ENSDCDG00000026537	fam234b (ENSDCDG00000026534)	ENSDCDG00000026530 #36	ENSDCDG00000026529	rrp7a (ENSDCDG00000026527) #35	ENSDCDG00000026522	wbp2nl (ENSDCDG00000026517) #22	ENSDCDG00000026515	FMC1 (ENSDCDG00000026513)	GRIN2B (ENSDCDG00000026129)	ENSDCDG00000026120 #32	GSG1 (ENSDCDG00000026117)	EMP1 (ENSDCDG00000026114)	ENSDCDG00000026102	ENSDCDG00000026087	ENSDCDG00000026085	ENSDCDG00000026078	ENSDCDG00000026075	ENSDCDG00000026071	ENSDCDG00000026070	ENSDCDG00000026069	ENSDCDG00000026064
Reedfish	MODERN SPECIES	3	ENSECRG00000008868	ENSECRG00000008844	ENSECRG00000008814	ENSECRG00000008771	POLDIP3 (ENSECRG00000020407) #36	RRP7A (ENSECRG00000020387) #35	SERHL2 (ENSECRG00000020348)	ENSECRG00000020307	ENSECRG00000020284	ENSECRG00000020273	ENSECRG00000020261	ENSECRG00000020253	CENPM (ENSECRG00000020234) #19	SMIM45 (ENSECRG00000020222) #20	septin3 (ENSECRG00000020179) #21	WBP2NL (ENSECRG00000020136) #22	naga (ENSECRG00000020071) #23	SMDT1 (ENSECRG00000020038)	ndufa6 (ENSECRG00000020023) #25	triobpb (ENSECRG00000019995)	nol12 (ENSECRG00000019979)	srebf2 (ENSECRG00000019940) #16	ENSECRG00000019920	ENSECRG00000019903	ENSECRG00000019894	ENSECRG00000019883	ENSECRG00000019861	ENSECRG00000019851	ENSECRG00000019834	ENSECRG00000019801	ENSECRG00000019781
Elephant shark	MODERN SPECIES	2699															ENSCMIG00000003976	wbp2nl (ENSCMIG00000003979) #22