Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT01100000263538.A.a.a.b.a.c.b ##11	ENSGT00940000163984.A #8	ENSGT00390000002077 #9	ENSGT00390000020164 #10	ENSGT01100000263538.A.a.a.b.a.c.a.a #11	ENSGT00940000157339 #12	ENSGT00390000015973 #13	ENSGT00940000177881 #14	ENSGT00940000157340.k.b #15	ENSGT00390000018898 #16	ENSGT00390000017489.a #17	ENSGT00530000063694.b #18	ENSGT00390000018868.A #19	ENSGT00390000018482 #20	ENSGT00940000161324.h.b #21	ENSGT00530000063718.a.b #22	ENSGT00940000160320 #23	ENSGT00390000012258 #24	ENSGT00940000155964.g #25	ENSGT00940000157896 #26	ENSGT01050000244814.a.a.a.b #27	ENSGT00950000182696.A.a.a.b #28	ENSGT00940000175473 #29	ENSGT00940000155083.a #30	ENSGT00940000157534.a.b #36	ENSGT00950000182961.a.b.b #35	ENSGT00390000013260.A.b.a #34	ENSGT00390000003753 #33	ENSGT00710000107036.a.a #32	ENSGT00940000160728.j #31	ENSGT00940000162350.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT01100000263538.A.a.a.b.a.c.b ##11	ENSGT00940000163984.A #8	ENSGT00390000002077 #9	ENSGT00390000020164 #10	ENSGT01100000263538.A.a.a.b.a.c.a.a #11	ENSGT00940000157339 #12	ENSGT00390000015973 #13	ENSGT00940000177881 #14	ENSGT00940000157340.k.b #15	ENSGT00390000018898 #16	ENSGT00390000017489.a #17	ENSGT00530000063694.b #18	ENSGT00390000018868.A #19	ENSGT00390000018482 #20	ENSGT00940000161324.h.b #21	ENSGT00530000063718.a.b #22	ENSGT00940000160320 #23	ENSGT00390000012258 #24	ENSGT00940000155964.g #25	ENSGT00940000157896 #26	ENSGT01050000244814.a.a.a.b #27	ENSGT00950000182696.A.a.a.b #28	ENSGT00940000175473 #29	ENSGT00940000155083.a #30	ENSGT00940000157534.a.b #36	ENSGT00950000182961.a.b.b #35	ENSGT00390000013260.A.b.a #34	ENSGT00390000003753 #33	ENSGT00710000107036.a.a #32	ENSGT00940000160728.j #31	ENSGT00940000162350.b.b
Haplochromini	ANCESTRAL SPECIES	32	ENSGT01100000263538.A.a.a.b.a.c.b ##11	ENSGT00940000163984.A #8	ENSGT00390000002077 #9	ENSGT00390000020164 #10	ENSGT01100000263538.A.a.a.b.a.c.a.a #11	ENSGT00940000157339 #12	ENSGT00390000015973 #13	ENSGT00940000177881 #14	ENSGT00940000157340.k.b #15	ENSGT00390000018898 #16	ENSGT00390000017489.a #17	ENSGT00530000063694.b #18	ENSGT00390000018868.A #19	ENSGT00390000018482 #20	ENSGT00940000161324.h.b #21	ENSGT00530000063718.a.b #22	ENSGT00940000160320 #23	ENSGT00390000012258 #24	ENSGT00940000155964.g #25	ENSGT00940000157896 #26	ENSGT01050000244814.a.a.a.b #27	ENSGT00950000182696.A.a.a.b #28	ENSGT00940000175473 #29	ENSGT00940000155083.a #30	ENSGT00940000162350.b.b	ENSGT00940000160728.j #31	ENSGT00710000107036.a.a #32	ENSGT00390000003753 #33	ENSGT00390000013260.A.b.a #34	ENSGT00950000182961.a.b.b #35	ENSGT00940000157534.a.b #36
Haplochromini_A	ANCESTRAL SPECIES	34	ENSGT00940000159856 #7	ENSGT00940000163984.A #8	ENSGT00390000002077 #9	ENSGT00390000020164 #10	ENSGT01100000263538.A.a.a.b.a.c.a.a #11	ENSGT00940000157339 #12	ENSGT00390000015973 #13	ENSGT00940000177881 #14	ENSGT00940000157340.k.b #15	ENSGT00390000018898 #16	ENSGT00390000017489.a #17	ENSGT00530000063694.b #18	ENSGT00390000018868.A #19	ENSGT00390000018482 #20	ENSGT00940000161324.h.b #21	ENSGT00530000063718.a.b #22	ENSGT00940000160320 #23	ENSGT00390000012258 #24	ENSGT00940000155964.g #25	ENSGT00940000157896 #26	ENSGT01050000244814.a.a.a.b #27	ENSGT00950000182696.A.a.a.b #28	ENSGT00940000175473 #29	ENSGT00940000155083.a #30	ENSGT00940000162350.b.b	ENSGT00940000160728.j #31	ENSGT00710000107036.a.a #32	ENSGT00390000003753 #33	ENSGT00390000013260.A.b.a #34	ENSGT00950000182961.a.b.b #35	ENSGT00940000157534.a.b #36
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00940000159856 #7	ENSGT00940000163984.A #8	ENSGT00390000002077 #9	ENSGT00390000020164 #10	ENSGT01100000263538.A.a.a.b.a.c.a.a #11	ENSGT00940000157339 #12	ENSGT00390000015973 #13	ENSGT00940000177881 #14	ENSGT00940000157340.k.b #15	ENSGT00390000018898 #16	ENSGT00390000017489.a #17	ENSGT00530000063694.b #18	ENSGT00390000018868.A #19	ENSGT00390000018482 #20	ENSGT00940000161324.h.b #21	ENSGT00530000063718.a.b #22	ENSGT00940000160320 #23	ENSGT00390000012258 #24	ENSGT00940000155964.g #25	ENSGT00940000157896 #26	ENSGT01050000244814.a.a.a.b #27	ENSGT00950000182696.A.a.a.b #28	ENSGT00940000175473 #29	ENSGT00940000155083.a #30	ENSGT00940000160728.j.j #31	ENSGT00710000107036.a.a #32	ENSGT00390000003753 #33	ENSGT00390000013260.A.b.a #34	ENSGT00950000182961.a.b.b #35	ENSGT00940000157534.a.b #36	ENSGT00940000160728.j.i #37
Eastern happy	MODERN SPECIES	16	ENSACLG00000016235 ##11	ENSACLG00000016285 #8	ENSACLG00000016306 #9	CCDC134 (ENSACLG00000016354) #10	ENSACLG00000016411 #11	srebf2 (ENSACLG00000016424) #12	nol12 (ENSACLG00000016476) #13	ENSACLG00000016496 #14	triobpb (ENSACLG00000016516) #15	ndufa6 (ENSACLG00000016559) #16	ENSACLG00000016708 #17	fam234b (ENSACLG00000016714) #18	ENSACLG00000016753 #19	rrp7a (ENSACLG00000016790) #20	ENSACLG00000016800 #21	wbp2nl (ENSACLG00000016819) #22	ENSACLG00000016837	ENSACLG00000016846 #23	FMC1 (ENSACLG00000016854) #24	GRIN2B (ENSACLG00000016908) #25	ENSACLG00000016969	ENSACLG00000016988 #26	ENSACLG00000016999 #27	EMP1 (ENSACLG00000017003) #28	ENSACLG00000017032 #29	ENSACLG00000017180 #30	ENSACLG00000017244	ENSACLG00000017258	PLEKHF1 (ENSACLG00000017282) #31	ENSACLG00000017288	ENSACLG00000017301 #32
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005005430 ##11	ENSMZEG00005005421 #7	ENSMZEG00005005407 #8	CCDC134 (ENSMZEG00005005376) #10	ENSMZEG00005005368 #11	srebf2 (ENSMZEG00005005342) #12	nol12 (ENSMZEG00005005326) #13	ENSMZEG00005005308 #14	triobpb (ENSMZEG00005005290) #15	ENSMZEG00005005277 #17	ndufa6 (ENSMZEG00005005262) #16	fam234b (ENSMZEG00005005248) #18	ENSMZEG00005005201 #19	rrp7a (ENSMZEG00005005197) #20	ENSMZEG00005005190 #21	wbp2nl (ENSMZEG00005005180) #22	ENSMZEG00005005169 #23	FMC1 (ENSMZEG00005005160) #24	ENSMZEG00005005150	GRIN2B (ENSMZEG00005005111) #25	ENSMZEG00005005101 #26	ENSMZEG00005005081	ENSMZEG00005005075 #28	ENSMZEG00005005062 #29	ENSMZEG00005005044 #30	PLEKHF1 (ENSMZEG00005005036) #37	ENSMZEG00005005030 #32	ENSMZEG00005005024 #33	ENSMZEG00005005015 #34	GPRC5D (ENSMZEG00005004995) #35	ENSMZEG00005004959 #36
P. nyererei	MODERN SPECIES	376	polr2f (ENSPNYG00000019790)	sox10 (ENSPNYG00000019806)	ENSPNYG00000019860	ENSPNYG00000020070 ##11	kdelr3 (ENSPNYG00000020090)	CCDC134 (ENSPNYG00000020112) #10	ENSPNYG00000020187 #11	srebf2 (ENSPNYG00000020194) #12	nol12 (ENSPNYG00000020267) #13	triobpb (ENSPNYG00000020282) #15	ndufa6 (ENSPNYG00000020298) #16	ENSPNYG00000020304 #17	fam234b (ENSPNYG00000020317) #18	ENSPNYG00000020333 #19	rrp7a (ENSPNYG00000020343) #20	wbp2nl (ENSPNYG00000020355) #22	ENSPNYG00000020388 #23	ENSPNYG00000020406	GRIN2B (ENSPNYG00000020415) #25	ENSPNYG00000020446 #26	ENSPNYG00000020453 #27	EMP1 (ENSPNYG00000020463) #28	ENSPNYG00000020482 #30	ENSPNYG00000020516 #32	ENSPNYG00000020565 #33	ENSPNYG00000020569 #34	GPRC5D (ENSPNYG00000020582) #35	ENSPNYG00000020595 #36	ENSPNYG00000020633	ENSPNYG00000020652	ddx47 (ENSPNYG00000020669)
Burton s mouthbrooder	MODERN SPECIES	564	ENSHBUG00000022042	kdelr3 (ENSHBUG00000022034)	ENSHBUG00000022010 ##11	ENSHBUG00000022001 #8	MEI1 (ENSHBUG00000021971) #9	CCDC134 (ENSHBUG00000021950) #10	ENSHBUG00000021907 #11	srebf2 (ENSHBUG00000021893) #12	nol12 (ENSHBUG00000021873) #13	triobpb (ENSHBUG00000021859) #15	ENSHBUG00000021832 #17	ndufa6 (ENSHBUG00000000676) #16	fam234b (ENSHBUG00000021822) #18	ENSHBUG00000021806 #19	rrp7a (ENSHBUG00000021788) #20	wbp2nl (ENSHBUG00000021768) #22	ENSHBUG00000021731 #23	FMC1 (ENSHBUG00000000671) #24	GRIN2B (ENSHBUG00000021706) #25	ENSHBUG00000021631 #26	ENSHBUG00000021623	ENSHBUG00000021589 #28	ENSHBUG00000021577	ENSHBUG00000021563 #30	ENSHBUG00000021544 #32	ENSHBUG00000021537 #33	ENSHBUG00000021529 #34	GPRC5D (ENSHBUG00000021515) #35	ENSHBUG00000000856 #36	ENSHBUG00000021409
Lyretail cichlid	MODERN SPECIES	344	sox10 (ENSNBRG00000002461)	ENSNBRG00000002223	kdelr3 (ENSNBRG00000002189)	ENSNBRG00000002181 ##11	CCDC134 (ENSNBRG00000002157) #10	ENSNBRG00000002144 #11	srebf2 (ENSNBRG00000002123) #12	nol12 (ENSNBRG00000002104) #13	ENSNBRG00000002089 #14	triobpb (ENSNBRG00000002012) #15	ndufa6 (ENSNBRG00000001991) #16	ENSNBRG00000001981 #17	fam234b (ENSNBRG00000001899) #18	ENSNBRG00000001837 #19	rrp7a (ENSNBRG00000001824) #20	wbp2nl (ENSNBRG00000001814) #22	ENSNBRG00000001794	FMC1 (ENSNBRG00000001781) #24	GRIN2B (ENSNBRG00000001736) #25	ENSNBRG00000001725 #26	GSG1 (ENSNBRG00000001699) #27	EMP1 (ENSNBRG00000001687) #28	ENSNBRG00000001651 #30	ENSNBRG00000001602	ENSNBRG00000001590	ENSNBRG00000001568 #36	GPRC5D (ENSNBRG00000001561) #35	ENSNBRG00000001552 #33	ENSNBRG00000001502	PLEKHF1 (ENSNBRG00000001460) #31	ENSNBRG00000001446
Nile tilapia	MODERN SPECIES	16	kdelr3 (ENSONIG00000008389)	ENSONIG00000021078 ##11	ENSONIG00000008386 #8	ENSONIG00000008384 #9	CCDC134 (ENSONIG00000008383) #10	ENSONIG00000042929 #11	srebf2 (ENSONIG00000008375) #12	nol12 (ENSONIG00000008373) #13	triobpb (ENSONIG00000008372) #15	ndufa6 (ENSONIG00000040875) #16	ENSONIG00000037657 #17	fam234b (ENSONIG00000008369) #18	ENSONIG00000008367 #19	rrp7a (ENSONIG00000008364) #20	ENSONIG00000008363 #21	wbp2nl (ENSONIG00000008361) #22	hebp1 (ENSONIG00000027525) #23	FMC1 (ENSONIG00000032844) #24	GRIN2B (ENSONIG00000008357) #25	ENSONIG00000029047 #26	GSG1 (ENSONIG00000042588) #27	EMP1 (ENSONIG00000030635) #28	ENSONIG00000034319	ENSONIG00000008347 #30	actb2 (ENSONIG00000003145)	ENSONIG00000033963	bud31 (ENSONIG00000008487)	pdap1 (ENSONIG00000038908)	shmt1 (ENSONIG00000008491)	cpsf4 (ENSONIG00000039547)	atp5mf (ENSONIG00000008498)