Acanthomorphata	ANCESTRAL SPECIES	60	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000157790	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00940000154268.k.b #22	ENSGT00940000154376.a.b #24	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183046.a.b.k #21	ENSGT00950000182883.a.a.b #25	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000157790	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000157790	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000155158.q.a	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000155158.q.a	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36
Carangaria	ANCESTRAL SPECIES	13	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000155158.q.a	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00980000202790	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000156038.a.b.b.j	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37
Tongue sole	MODERN SPECIES	18	plce1 (ENSCSEG00000006500)	pcdh15b (ENSCSEG00000006467)	ENSCSEG00000006459	ENSCSEG00000006445	ENSCSEG00000006443	znf281b (ENSCSEG00000006427) #37	ENSCSEG00000006417	ENSCSEG00000006400	ENSCSEG00000006332 #35	ENSCSEG00000006323	psmc5 (ENSCSEG00000006318) #32	SMARCD2 (ENSCSEG00000006246) #31	psmc5 (ENSCSEG00000006228) #32	SMARCD2 (ENSCSEG00000006220) #31	atxn7l3b (ENSCSEG00000006212)	ndufa4b (ENSCSEG00000006204) #22	ENSCSEG00000006199 #23	SPOP (ENSCSEG00000006193) #24	ENSCSEG00000006189
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000155158.q.a	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37
Barramundi perch	MODERN SPECIES	525										dcaf7 (ENSLCAG00010014416) #16	ENSLCAG00010014414 #17	TACO1 (ENSLCAG00010014413) #18	pth3r (ENSLCAG00010014411) #19	rundc3ab (ENSLCAG00010014409) #20	ENSLCAG00010014408 #21	ndufa4b (ENSLCAG00010014407) #22	ENSLCAG00010014403 #23	SPOP (ENSLCAG00010014399) #24	ENSLCAG00010014396 #25	ENSLCAG00010014395 #27	ENSLCAG00010014392 ##27	ENSLCAG00010014367 #26	ENSLCAG00010014361 #27	ENSLCAG00010014358 #27	ngfrb (ENSLCAG00010014352) #28	slc4a1b (ENSLCAG00010014348) #29	ENSLCAG00010014346	atxn7l3b (ENSLCAG00010014342)	ENSLCAG00010013976 #31
Seriola	ANCESTRAL SPECIES	1	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Greater amberjack	MODERN SPECIES	27	PAQR4 (ENSSDUG00000022934)	ENSSDUG00000022927	TGFB1I1 (ENSSDUG00000022922) #7	ELOB (ENSSDUG00000022919) #8	pkmyt1 (ENSSDUG00000022916) #9	ENSSDUG00000022914 #10	mylpfb (ENSSDUG00000022903) #13	pgap3 (ENSSDUG00000022901) #14	erbb2 (ENSSDUG00000022891) #15	dcaf7 (ENSSDUG00000022887) #16	ENSSDUG00000022883 #17	TACO1 (ENSSDUG00000022880) #18	pth3r (ENSSDUG00000022857) #19	rundc3ab (ENSSDUG00000022848) #20	ENSSDUG00000022845 #21	ndufa4b (ENSSDUG00000022841) #22	ENSSDUG00000022836 #23	SPOP (ENSSDUG00000022832) #24	ENSSDUG00000022827 #25	ENSSDUG00000022823 #26	ENSSDUG00000022778 #27	ENSSDUG00000022766 #26	ENSSDUG00000022749 #27	ngfrb (ENSSDUG00000022748) #28	slc4a1b (ENSSDUG00000022741) #29	ENSSDUG00000022735	atxn7l3b (ENSSDUG00000022728)	SMARCD2 (ENSSDUG00000022719) #31	psmc5 (ENSSDUG00000022708) #32	MPP3 (ENSSDUG00000022679) #33	ENSSDUG00000022655 #35
Yellowtail amberjack	MODERN SPECIES	2524	ENSSLDG00000017922	TGFB1I1 (ENSSLDG00000017965) #7	ENSSLDG00000017998 #8	pkmyt1 (ENSSLDG00000018021) #9	ENSSLDG00000018033 #10	ENSSLDG00000018048 #12	mylpfb (ENSSLDG00000018056) #13	pgap3 (ENSSLDG00000018066) #14	erbb2 (ENSSLDG00000018095) #15	dcaf7 (ENSSLDG00000018199) #16	ENSSLDG00000018215	TACO1 (ENSSLDG00000018233) #18	pth3r (ENSSLDG00000018240) #19	rundc3ab (ENSSLDG00000018257) #20	ENSSLDG00000018289 #21	ndufa4b (ENSSLDG00000018301) #22	ENSSLDG00000018310 #23	SPOP (ENSSLDG00000018331) #24	ENSSLDG00000018345 #25	ENSSLDG00000018363 #27	ngfrb (ENSSLDG00000018405) #28	slc4a1b (ENSSLDG00000018419) #29	ENSSLDG00000018481	atxn7l3b (ENSSLDG00000018574)	SMARCD2 (ENSSLDG00000018584) #31	psmc5 (ENSSLDG00000018602) #32	MPP3 (ENSSLDG00000018653) #33
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000013417 #7	ENSMAMG00000013438 #8	ENSMAMG00000013454 #9	ENSMAMG00000013466 #10	ENSMAMG00000013484 #11	ENSMAMG00000013488 #12	ENSMAMG00000013497 #13	pgap3 (ENSMAMG00000013504) #14	erbb2 (ENSMAMG00000013531) #15	ENSMAMG00000013636 #16	ENSMAMG00000013656	ENSMAMG00000013684 #18	pth3r (ENSMAMG00000013726) #19	rundc3ab (ENSMAMG00000013812) #20	ENSMAMG00000013934 #21	ndufa4b (ENSMAMG00000013949) #22	ENSMAMG00000013961 #23	SPOP (ENSMAMG00000021915) #24	ENSMAMG00000013998 #25	ENSMAMG00000014020 #27	ngfrb (ENSMAMG00000014053) #28	slc4a1b (ENSMAMG00000014062) #29	ENSMAMG00000014097 #30	atxn7l3b (ENSMAMG00000014126)	ENSMAMG00000014154 #31	psmc5 (ENSMAMG00000014203) #32	ENSMAMG00000014251 #33	ENSMAMG00000014304 #35	ENSMAMG00000014486 #36	znf281b (ENSMAMG00000014508) #37	ENSMAMG00000014516
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e	ENSGT00940000166361
Siamese fighting fish	MODERN SPECIES	9	PAQR4 (ENSBSLG00000018353)	ENSBSLG00000018382	TGFB1I1 (ENSBSLG00000018442) #7	ELOB (ENSBSLG00000018487) #8	pkmyt1 (ENSBSLG00000018496) #9	ENSBSLG00000018505 #10	ENSBSLG00000018512	ENSBSLG00000018515 #12	mylpfb (ENSBSLG00000004909) #13	pgap3 (ENSBSLG00000005006) #14	erbb2 (ENSBSLG00000005326) #15	ENSBSLG00000006169 #17	TACO1 (ENSBSLG00000006171) #18	rundc3ab (ENSBSLG00000006177) #20	fam117ab (ENSBSLG00000006227) #21	ndufa4b (ENSBSLG00000006230) #22	ENSBSLG00000006350	SPOP (ENSBSLG00000006511) #24	NXPH3 (ENSBSLG00000006615) #25	ngfrb (ENSBSLG00000006635) #28	slc4a1b (ENSBSLG00000006778) #29	ENSBSLG00000007745 #30	atxn7l3b (ENSBSLG00000007801)	SMARCD2 (ENSBSLG00000007933) #31	psmc5 (ENSBSLG00000008596) #32	MPP3 (ENSBSLG00000008760) #33	muc13b (ENSBSLG00000008961) #36	znf281b (ENSBSLG00000009071) #37	ENSBSLG00000009085	ENSBSLG00000009158	nmt1b (ENSBSLG00000009590)
Climbing perch	MODERN SPECIES	10	ENSATEG00000019609 #7	ENSATEG00000019654 #8	ENSATEG00000019662 #9	ENSATEG00000019691 #10	ENSATEG00000019706	ENSATEG00000019748 #12	ENSATEG00000019753 #13	ENSATEG00000019764 #14	ENSATEG00000019808 #15	ENSATEG00000019890 #16	ENSATEG00000019921 #17	ENSATEG00000019980 #18	ENSATEG00000019992 #19	rundc3ab (ENSATEG00000020006) #20	ENSATEG00000025270 #21	ndufa4b (ENSATEG00000020044) #22	ENSATEG00000020061 #23	SPOP (ENSATEG00000020080) #24	ENSATEG00000020098 #25	ENSATEG00000020157 #27	ENSATEG00000020572 #26	ENSATEG00000020644 #27	ngfrb (ENSATEG00000020725) #28	slc4a1b (ENSATEG00000020739) #29	ENSATEG00000028197	atxn7l3b (ENSATEG00000020765)	ENSATEG00000020779 #31	psmc5 (ENSATEG00000020792) #32	ENSATEG00000020833 #33	ENSATEG00000020855	znf281b (ENSATEG00000020866) #37
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000155158.q.a	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00390000016326	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e	ENSGT00940000166361
Tetraodon	MODERN SPECIES	13	ppp1cab (ENSTNIG00000018938)	pelo (ENSTNIG00000018937)	PAQR4 (ENSTNIG00000000846)	TGFB1I1 (ENSTNIG00000018936) #7	ENSTNIG00000018935 #8	pkmyt1 (ENSTNIG00000018934) #9	ENSTNIG00000000722 #12	mylpfb (ENSTNIG00000000835) #13	pgap3 (ENSTNIG00000018933) #14	erbb2 (ENSTNIG00000018932) #15	KCNH2 (ENSTNIG00000018931) #17	TACO1 (ENSTNIG00000018930) #18	pth3r (ENSTNIG00000018929) #19	rundc3ab (ENSTNIG00000018928) #20	fam117ab (ENSTNIG00000018927) #21	ndufa4b (ENSTNIG00000018926) #22	SPOP (ENSTNIG00000018925) #24	ngfrb (ENSTNIG00000018924) #28	slc4a1b (ENSTNIG00000018923) #29	atxn7l3b (ENSTNIG00000018922)	SMARCD2 (ENSTNIG00000018921) #31	psmc5 (ENSTNIG00000018920) #32	MPP3 (ENSTNIG00000018919) #33	ENSTNIG00000018918 #35	ENSTNIG00000001290 #36	znf281b (ENSTNIG00000018917) #37	ENSTNIG00000018916	ENSTNIG00000018915	nmt1b (ENSTNIG00000018914)	pcdh15b (ENSTNIG00000018912)	plce1 (ENSTNIG00000018911)
Fugu	MODERN SPECIES		PAQR4 (ENSTRUG00000005707)	ENSTRUG00000021798	ENSTRUG00000005647	TGFB1I1 (ENSTRUG00000005520) #7	ENSTRUG00000021422 #8	pkmyt1 (ENSTRUG00000024878) #9	ENSTRUG00000024642 #12	mylpfb (ENSTRUG00000004965) #13	pgap3 (ENSTRUG00000004859) #14	erbb2 (ENSTRUG00000004330) #15	KCNH2 (ENSTRUG00000031535) #17	TACO1 (ENSTRUG00000004051) #18	pth3r (ENSTRUG00000002272) #19	rundc3ab (ENSTRUG00000001646) #20	fam117ab (ENSTRUG00000019601) #21	ndufa4b (ENSTRUG00000021066) #22	ENSTRUG00000019665 #23	SPOP (ENSTRUG00000001512) #24	ngfrb (ENSTRUG00000022461) #28	NXPH3 (ENSTRUG00000027658) #25	slc4a1b (ENSTRUG00000002827) #29	ENSTRUG00000022626 #30	atxn7l3b (ENSTRUG00000025133)	SMARCD2 (ENSTRUG00000005247) #31	psmc5 (ENSTRUG00000005619) #32	MPP3 (ENSTRUG00000005965) #33	slc4a1b (ENSTRUG00000026909) #29	atxn7l3b (ENSTRUG00000030636)	SMARCD2 (ENSTRUG00000030431) #31	MPP3 (ENSTRUG00000026528) #33	ENSTRUG00000006253 #35
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00710000106813.B.b #36	ENSGT00940000182154 #34
Ballan wrasse	MODERN SPECIES	5	ENSLBEG00000022344	TGFB1I1 (ENSLBEG00000022275) #7	ELOB (ENSLBEG00000022223) #8	pkmyt1 (ENSLBEG00000022199) #9	ENSLBEG00000022092	ENSLBEG00000022059 #10	ENSLBEG00000022038 #12	mylpfb (ENSLBEG00000022011) #13	pgap3 (ENSLBEG00000021980) #14	erbb2 (ENSLBEG00000021858) #15	ENSLBEG00000021796 #17	TACO1 (ENSLBEG00000021786) #18	pth3r (ENSLBEG00000021706) #19	rundc3ab (ENSLBEG00000021683) #20	ENSLBEG00000021662 #21	ndufa4b (ENSLBEG00000021652) #22	ENSLBEG00000021626 #23	SPOP (ENSLBEG00000021598) #24	ENSLBEG00000021575 #25	ENSLBEG00000021511 #26	ENSLBEG00000021463 #27	ngfrb (ENSLBEG00000021441) #28	slc4a1b (ENSLBEG00000020948) #29	ENSLBEG00000020716	atxn7l3b (ENSLBEG00000020685)	SMARCD2 (ENSLBEG00000020464) #31	psmc5 (ENSLBEG00000020388) #32	MPP3 (ENSLBEG00000020280) #33	ENSLBEG00000020229 #34	ENSLBEG00000019672 #35	ENSLBEG00000019580
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331
Perciformes	ANCESTRAL SPECIES	9	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331	ENSGT00940000161586.d #37
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Stickleback	MODERN SPECIES	5	PAQR4 (ENSGACG00000007239)	TGFB1I1 (ENSGACG00000007235) #7	ELOB (ENSGACG00000007227) #8	pkmyt1 (ENSGACG00000007222) #9	ENSGACG00000007220 #11	ENSGACG00000007217 #12	mylpfb (ENSGACG00000007182) #13	pgap3 (ENSGACG00000007172) #14	erbb2 (ENSGACG00000007160) #15	dcaf7 (ENSGACG00000007116) #16	ENSGACG00000007113 #17	TACO1 (ENSGACG00000007104) #18	pth3r (ENSGACG00000007096) #19	rundc3ab (ENSGACG00000007088) #20	fam117ab (ENSGACG00000007083) #21	ndufa4b (ENSGACG00000007080) #22	ENSGACG00000007076	ENSGACG00000007075	SPOP (ENSGACG00000007059) #24	NXPH3 (ENSGACG00000007057) #25	ENSGACG00000007050 #27	ngfrb (ENSGACG00000007042) #28	slc4a1b (ENSGACG00000007018) #29	ENSGACG00000007007 #30	atxn7l3b (ENSGACG00000007000)	SMARCD2 (ENSGACG00000006989) #31	psmc5 (ENSGACG00000006910) #32	MPP3 (ENSGACG00000006899) #33	ENSGACG00000006895	ENSGACG00000006865 #35	ENSGACG00000006864
Lumpfish	MODERN SPECIES	10	TGFB1I1 (ENSCLMG00005003846) #7	ELOB (ENSCLMG00005003894) #8	pkmyt1 (ENSCLMG00005003898) #9	ENSCLMG00005003899 #10	ENSCLMG00005003900 #11	ENSCLMG00005003901 #12	mylpfb (ENSCLMG00005003903) #13	pgap3 (ENSCLMG00005003938) #14	erbb2 (ENSCLMG00005004004) #15	DCAF7 (ENSCLMG00005012678) #16	ENSCLMG00005012680 #17	TACO1 (ENSCLMG00005012681) #18	pth3r (ENSCLMG00005012682) #19	rundc3ab (ENSCLMG00005012683) #20	fam117ab (ENSCLMG00005012685) #21	ndufa4b (ENSCLMG00005012686) #22	ENSCLMG00005012687 #23	SPOP (ENSCLMG00005012688) #24	ENSCLMG00005012689 #25	ngfrb (ENSCLMG00005012690) #28	slc4a1b (ENSCLMG00005012693) #29	ENSCLMG00005013911 #30	atxn7l3b (ENSCLMG00005013912)	SMARCD2 (ENSCLMG00005013932) #31	psmc5 (ENSCLMG00005015987) #32	MPP3 (ENSCLMG00005016020) #33	ENSCLMG00005016031 #35	ENSCLMG00005016074	ENSCLMG00005016076	ENSCLMG00005016078	ENSCLMG00005016106
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Channel bull blenny	MODERN SPECIES	10	pelo (ENSCGOG00000010254)	PAQR4 (ENSCGOG00000010246)	TGFB1I1 (ENSCGOG00000010228) #7	ELOB (ENSCGOG00000010225) #8	pkmyt1 (ENSCGOG00000010224) #9	ENSCGOG00000010222 #12	mylpfb (ENSCGOG00000010095) #13	pgap3 (ENSCGOG00000010087) #14	erbb2 (ENSCGOG00000008638) #15	dcaf7 (ENSCGOG00000008523) #16	ENSCGOG00000008519 #17	TACO1 (ENSCGOG00000008518) #18	pth3r (ENSCGOG00000008516) #19	rundc3ab (ENSCGOG00000019834) #20	ENSCGOG00000019830 #21	ndufa4b (ENSCGOG00000019827) #22	SPOP (ENSCGOG00000019771) #24	ENSCGOG00000019770 #25	ENSCGOG00000019769 #26	ENSCGOG00000019744 #27	ENSCGOG00000019737 #26	ENSCGOG00000019736	ENSCGOG00000019713 ##27	ENSCGOG00000019711 #26	ENSCGOG00000019690 ##27	ngfrb (ENSCGOG00000019685) #28	slc4a1b (ENSCGOG00000019646) #29	ENSCGOG00000019645 #30	atxn7l3b (ENSCGOG00000019642)	SMARCD2 (ENSCGOG00000018497) #31	psmc5 (ENSCGOG00000017692) #32
Pike perch	MODERN SPECIES	3	TGFB1I1 (ENSSLUG00000020631) #7	ELOB (ENSSLUG00000020628) #8	pkmyt1 (ENSSLUG00000020626) #9	ENSSLUG00000020622 #10	ENSSLUG00000020620	ENSSLUG00000020617 #11	ENSSLUG00000020610 #12	pgap3 (ENSSLUG00000020593) #14	erbb2 (ENSSLUG00000011455) #15	dcaf7 (ENSSLUG00000011091) #16	KCNH2 (ENSSLUG00000011040) #17	TACO1 (ENSSLUG00000011036) #18	pth3r (ENSSLUG00000010855) #19	rundc3ab (ENSSLUG00000010810) #20	ENSSLUG00000010795 #21	ndufa4b (ENSSLUG00000010789) #22	ENSSLUG00000010779 #23	SPOP (ENSSLUG00000010764) #24	ENSSLUG00000010757 #25	ENSSLUG00000010753 #27	ENSSLUG00000010747 #27	ENSSLUG00000010648 #26	ENSSLUG00000010624 #27	ngfrb (ENSSLUG00000010602) #28	slc4a1b (ENSSLUG00000010500) #29	ENSSLUG00000010468	atxn7l3b (ENSSLUG00000010460)	SMARCD2 (ENSSLUG00000008881) #31	psmc5 (ENSSLUG00000007878) #32	MPP3 (ENSSLUG00000007476) #33	ENSSLUG00000007412 #35
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b.s #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37
Gilthead seabream	MODERN SPECIES	12	PAQR4 (ENSSAUG00010025708)	ENSSAUG00010025713	TGFB1I1 (ENSSAUG00010025718) #7	ELOB (ENSSAUG00010025733) #8	pkmyt1 (ENSSAUG00010025735) #9	ENSSAUG00010025736	ENSSAUG00010025738 #12	mylpfb (ENSSAUG00010025741) #13	pgap3 (ENSSAUG00010025745) #14	erbb2 (ENSSAUG00010025759) #15	KCNH2 (ENSSAUG00010025877) #17	TACO1 (ENSSAUG00010025878) #18	pth3r (ENSSAUG00010025885) #19	rundc3ab (ENSSAUG00010025979) #20	ENSSAUG00010025982 #21	ndufa4b (ENSSAUG00010025985) #22	ENSSAUG00010002622 #23	SPOP (ENSSAUG00010002640) #24	ENSSAUG00010002657 #25	ENSSAUG00010002661 #26	ENSSAUG00010002688 #27	ENSSAUG00010002757 #27	ENSSAUG00010002971 #26	ENSSAUG00010002990 #27	ENSSAUG00010003119	ngfrb (ENSSAUG00010003121) #28	slc4a1b (ENSSAUG00010003202) #29	ENSSAUG00010004942 #30	atxn7l3b (ENSSAUG00010004946)	SMARCD2 (ENSSAUG00010004972) #31	psmc5 (ENSSAUG00010006373) #32
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b.t.a #27	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b.s #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331
European seabass	MODERN SPECIES	11	ENSDLAG00005007289	ENSDLAG00005007319 #7	ENSDLAG00005007498 #9	ENSDLAG00005007502 #10	ENSDLAG00005026794 #11	ENSDLAG00005007525 #13	pgap3 (ENSDLAG00005007633) #14	erbb2 (ENSDLAG00005007841) #15	ENSDLAG00005012196 #16	ENSDLAG00005012200 #17	ENSDLAG00005012218 #18	pth3r (ENSDLAG00005012235) #19	rundc3ab (ENSDLAG00005012756) #20	ENSDLAG00005012843 #21	ENSDLAG00005013020 #25	ndufa4b (ENSDLAG00005012859) #22	ENSDLAG00005012916 #23	ENSDLAG00005013004 #24	ENSDLAG00005034472 #27	ENSDLAG00005013022 ##27	ENSDLAG00005029060	ENSDLAG00005013039	ENSDLAG00005003795 #26	ENSDLAG00005013082 #27	ENSDLAG00005031240 ##27	ENSDLAG00005013164 #26	ngfrb (ENSDLAG00005013172) #28	slc4a1b (ENSDLAG00005013213) #29	SMARCD2 (ENSDLAG00005026806) #31	psmc5 (ENSDLAG00005014093) #32	ENSDLAG00005014419 #33
Large yellow croaker	MODERN SPECIES		ENSLCRG00005016358	adad1 (ENSLCRG00005016359)	tlx2 (ENSLCRG00005016361)	npm1b (ENSLCRG00005016362)	fgf24 (ENSLCRG00005016366)	pcgf1 (ENSLCRG00005016372)	lbx2 (ENSLCRG00005016380)	nanos1 (ENSLCRG00005016382)	ctsz (ENSLCRG00005016384)	dcaf7 (ENSLCRG00005016386) #16	KCNH2 (ENSLCRG00005016392) #17	TACO1 (ENSLCRG00005016394) #18	pth3r (ENSLCRG00005016399) #19	rundc3ab (ENSLCRG00005016409) #20	ENSLCRG00005016416 #21	ndufa4b (ENSLCRG00005016421) #22	ENSLCRG00005016422 #23	SPOP (ENSLCRG00005016426) #24	ENSLCRG00005016460 #25	ENSLCRG00005000066 #26	ENSLCRG00005000070 ##27	ENSLCRG00005000072 #26	ENSLCRG00005000076 #27	RNF157 (ENSLCRG00005000115)	srsf2a (ENSLCRG00005000152)	st6galnac1.1 (ENSLCRG00005000155)	ENSLCRG00005000162	st6galnac1.1 (ENSLCRG00005000168)	olig2 (ENSLCRG00005000176)	ENSLCRG00005000179	olig1 (ENSLCRG00005000184)
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000156038.a.b.b.j	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000156038.a.b.b.j	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35	ENSGT01030000235331
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.j ##16	ENSGT00940000157790.sb.a	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450.b #30	ENSGT00940000169450.a #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331	ENSGT00710000106813.B.b #36
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450.b #30	ENSGT00940000169450.a #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331	ENSGT00710000106813.B.b.d #36
Poecilia	ANCESTRAL SPECIES	22	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000157790.sb.a	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00940000173105	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b.cb.a #27	ENSGT00940000164679.n.a.b #26	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00940000164679.n.b #26	ENSGT00950000183155.a.a.a.a.b.cb.b #27	ENSGT00940000156038.a.b.b.j	ENSGT00940000164679.n.a.a #26	ENSGT00950000183155.a.a.a.a.b.bb #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450.b #30
NAME_6	ANCESTRAL SPECIES	137	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00940000173105
Sailfin molly	MODERN SPECIES	3396															ENSPLAG00000018994 #21	ndufa4b (ENSPLAG00000018985) #22
Amazon molly	MODERN SPECIES	558	PAQR4 (ENSPFOG00000007278)	ENSPFOG00000007305	TGFB1I1 (ENSPFOG00000007368) #7	ELOB (ENSPFOG00000007452) #8	pkmyt1 (ENSPFOG00000007455) #9	ENSPFOG00000007510 #11	ENSPFOG00000007521 #12	mylpfb (ENSPFOG00000007547) #13	pgap3 (ENSPFOG00000007591) #14	erbb2 (ENSPFOG00000007662) #15	KCNH2 (ENSPFOG00000007934) #17	TACO1 (ENSPFOG00000008051) #18	pth3r (ENSPFOG00000008090) #19	rundc3ab (ENSPFOG00000008349) #20	ENSPFOG00000023030 #21	ndufa4b (ENSPFOG00000008522) #22	ENSPFOG00000008524
Platyfish	MODERN SPECIES	1	pelo (ENSXMAG00000018474)	PAQR4 (ENSXMAG00000023650)	ENSXMAG00000018464	TGFB1I1 (ENSXMAG00000018458) #7	ELOB (ENSXMAG00000018454) #8	pkmyt1 (ENSXMAG00000018446) #9	ENSXMAG00000024731 #12	mylpfb (ENSXMAG00000021883) #13	pgap3 (ENSXMAG00000026396) #14	erbb2 (ENSXMAG00000018390) #15	ENSXMAG00000018383 #17	TACO1 (ENSXMAG00000029575) #18	pth3r (ENSXMAG00000025154) #19	rundc3ab (ENSXMAG00000018332) #20	ENSXMAG00000018330 #21	ndufa4b (ENSXMAG00000018329) #22	ENSXMAG00000029816 #23	SPOP (ENSXMAG00000018312) #24	ENSXMAG00000024772 #25	ENSXMAG00000028846	ENSXMAG00000028139 #27	ENSXMAG00000029419 #26	ENSXMAG00000026541 #27	ENSXMAG00000023801 #26	ngfrb (ENSXMAG00000017049) #28	slc4a1b (ENSXMAG00000017002) #29	ENSXMAG00000016991 #30	ENSXMAG00000024453 #30	atxn7l3b (ENSXMAG00000016988)	SMARCD2 (ENSXMAG00000016961) #31	psmc5 (ENSXMAG00000016945) #32
NAME_4	ANCESTRAL SPECIES	15	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.j ##16	ENSGT00940000157790.sb.a	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00940000173105	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25
Mummichog	MODERN SPECIES	397	TGFB1I1 (ENSFHEG00000009650) #7	ELOB (ENSFHEG00000009631) #8	pkmyt1 (ENSFHEG00000009609) #9	ENSFHEG00000009606 #11	ENSFHEG00000009599 #12	mylpfb (ENSFHEG00000009584) #13	pgap3 (ENSFHEG00000009553) #14	erbb2 (ENSFHEG00000009522) #15	erbb2 (ENSFHEG00000009288) #15	DCAF7 (ENSFHEG00000009224) ##16	KCNH6 (ENSFHEG00000009215)	ENSFHEG00000009201 #18	pth3r (ENSFHEG00000009189) #19	rundc3ab (ENSFHEG00000009117) #20	ENSFHEG00000008921 #21	ndufa4b (ENSFHEG00000008915) #22	ENSFHEG00000008887 #23	ENSFHEG00000008833 #24	ENSFHEG00000008805 #25
Sheepshead minnow	MODERN SPECIES	240		ELOB (ENSCVAG00000005500) #8	pkmyt1 (ENSCVAG00000005491) #9	ENSCVAG00000005485 #11	mylpfb (ENSCVAG00000005476) #13	ENSCVAG00000000988 #12	pgap3 (ENSCVAG00000005452) #14	erbb2 (ENSCVAG00000005423) #15	ENSCVAG00000005403	dcaf7 (ENSCVAG00000000155) #16	ENSCVAG00000005374 #17	TACO1 (ENSCVAG00000005360) #18	pth3r (ENSCVAG00000005352) #19	rundc3ab (ENSCVAG00000005322) #20	ENSCVAG00000000933 #21	ndufa4b (ENSCVAG00000005279) #22	ENSCVAG00000005267	ext2 (ENSCVAG00000005242)	ALX4 (ENSCVAG00000005157)	caprin1a (ENSCVAG00000005129)	nucb2a (ENSCVAG00000005024)	PLEKHA7 (ENSCVAG00000005004)	sox6 (ENSCVAG00000004943)	ENSCVAG00000004905	CYP2R1 (ENSCVAG00000004875)	PDE3B (ENSCVAG00000004812)	copb1 (ENSCVAG00000000142)	rras2 (ENSCVAG00000004694)	TUB (ENSCVAG00000004646)	ENSCVAG00000004626	lmo1 (ENSCVAG00000004614)
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000157790	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000164679 #26	ENSGT00940000156038.a.b.b.j	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000182154 #34	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37
Mangrove rivulus	MODERN SPECIES	4	PAQR4 (ENSKMAG00000021290)	ENSKMAG00000021275	TGFB1I1 (ENSKMAG00000021260) #7	ELOB (ENSKMAG00000021249) #8	pkmyt1 (ENSKMAG00000021235) #9	ENSKMAG00000021227 ##10	ENSKMAG00000021219 #12	mylpfb (ENSKMAG00000021210) #13	pgap3 (ENSKMAG00000021195) #14	erbb2 (ENSKMAG00000021178) #15	ENSKMAG00000021161	TACO1 (ENSKMAG00000021152) #18	pth3r (ENSKMAG00000021140) #19	rundc3ab (ENSKMAG00000021114) #20	ENSKMAG00000021098 #21	ndufa4b (ENSKMAG00000021090) #22	ENSKMAG00000021077 #23	ENSKMAG00000021068	SPOP (ENSKMAG00000021057) #24	NXPH3 (ENSKMAG00000021048) #25	ENSKMAG00000021044 #26	ENSKMAG00000021031 #26	ENSKMAG00000021018	ENSKMAG00000021005 #26	ENSKMAG00000020995 #26	ENSKMAG00000020976 #26	ENSKMAG00000020959 #26	ENSKMAG00000020942 #27	ENSKMAG00000020868 #27	ngfrb (ENSKMAG00000020839) #28	slc4a1b (ENSKMAG00000020820) #29
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015018803 #35	ENSNFUG00015018844 #34	MPP3 (ENSNFUG00015018854) #33	PSMC5 (ENSNFUG00015018990) #32	SMARCD2 (ENSNFUG00015019172) #31	atxn7l3b (ENSNFUG00015020980)	slc4a1b (ENSNFUG00015021007) #29	NGFR (ENSNFUG00015021859) #28	ENSNFUG00015021861	ENSNFUG00015021864	ENSNFUG00015021881 #26	NXPH4 (ENSNFUG00015021883) #25	SPOP (ENSNFUG00015021887) #24	RAP2IP (ENSNFUG00015021901) #20	ENSNFUG00015021999 #21	NDUFA4 (ENSNFUG00015022001) #22	ENSNFUG00015022004 #23	pth3r (ENSNFUG00015022023) #19	TACO1 (ENSNFUG00015022273) #18	ENSNFUG00015022275	DCAF7 (ENSNFUG00015022279) #16	ERBB2 (ENSNFUG00015022315) #15	ENSNFUG00015023037	PGAP3 (ENSNFUG00015023043) #14	mylpfb (ENSNFUG00015023064) #13	ENSNFUG00015023071	OLA.27416 (ENSNFUG00015023073) #12	PKMYT1 (ENSNFUG00015023077) #9	ELOB (ENSNFUG00015023079) #8	TGFB1I1 (ENSNFUG00015023082) #7	ENSNFUG00015023086
Oryzias	ANCESTRAL SPECIES	11	ENSGT00390000016326	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679.r.a.a #26	ENSGT00950000183155.a.a.a.a.b.fb #27	ENSGT00940000164679.r.a.b.a #26	ENSGT00950000183155.a.a.a.a.b.gb #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000164512.d
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00390000016326	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b.fb #27	ENSGT00940000164679.r.a.b.a #26	ENSGT00950000183155.a.a.a.a.b.gb #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT01030000235331
Indian medaka	MODERN SPECIES	17	PAQR4 (ENSOMEG00000021594)	ENSOMEG00000021628	TGFB1I1 (ENSOMEG00000021704) #7	ELOB (ENSOMEG00000021737) #8	pkmyt1 (ENSOMEG00000021762) #9	ENSOMEG00000021769	ENSOMEG00000021785 #12	mylpfb (ENSOMEG00000021803) #13	pgap3 (ENSOMEG00000021848) #14	erbb2 (ENSOMEG00000021935) #15	ENSOMEG00000021954	TACO1 (ENSOMEG00000021984) #18	pth3r (ENSOMEG00000022022) #19	rundc3ab (ENSOMEG00000022064) #20	ENSOMEG00000022080 #21	ndufa4b (ENSOMEG00000022090) #22	ENSOMEG00000022139 #23	SPOP (ENSOMEG00000022194) #24	ENSOMEG00000022203 #25	ENSOMEG00000022350 #27	ENSOMEG00000022399 #26	ENSOMEG00000022439 #26	ENSOMEG00000022458 #27	ENSOMEG00000022469 #27	ENSOMEG00000022482 #27	ENSOMEG00000022584 #27	ngfrb (ENSOMEG00000022613) #28	slc4a1b (ENSOMEG00000000599) #29	ENSOMEG00000022642 #30	atxn7l3b (ENSOMEG00000022658)	SMARCD2 (ENSOMEG00000022684) #31
Javanese ricefish	MODERN SPECIES	10	pelo (ENSOJAG00000023604)	PAQR4 (ENSOJAG00000023594)	ENSOJAG00000023589	TGFB1I1 (ENSOJAG00000023561) #7	ELOB (ENSOJAG00000023551) #8	pkmyt1 (ENSOJAG00000023546) #9	ENSOJAG00000023542 #12	mylpfb (ENSOJAG00000023531) #13	pgap3 (ENSOJAG00000023525) #14	erbb2 (ENSOJAG00000022944) #15	kcnh2a (ENSOJAG00000022755) #17	TACO1 (ENSOJAG00000022744) #18	pth3r (ENSOJAG00000022691) #19	rundc3ab (ENSOJAG00000022673) #20	ENSOJAG00000022666 #21	ndufa4b (ENSOJAG00000022664) #22	ENSOJAG00000022662 #23	SPOP (ENSOJAG00000022636) #24	ENSOJAG00000022634 #25	ENSOJAG00000022630	ENSOJAG00000022623 ##27	ENSOJAG00000022610 #26	ENSOJAG00000022602 #26	ENSOJAG00000022581 #27	ENSOJAG00000022529 #27	ENSOJAG00000022507 #26	ENSOJAG00000022499 #27	ngfrb (ENSOJAG00000022492) #28	slc4a1b (ENSOJAG00000022453) #29	ENSOJAG00000022442 #30	atxn7l3b (ENSOJAG00000022437)
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00390000016326	ENSGT00940000157978.b	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b.fb.b #27	ENSGT00940000164679.r.a.b.a #26	ENSGT00950000183155.a.a.a.a.b.fb.a.b #27	ENSGT00940000156038.a.b.b.j	ENSGT00950000183155.a.a.a.a.b.gb #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33
Chinese medaka	MODERN SPECIES	1248	pelo (ENSOSIG00000014434)	PAQR4 (ENSOSIG00000014439)	ENSOSIG00000014440	TGFB1I1 (ENSOSIG00000014446) #7	ELOB (ENSOSIG00000014448) #8	pkmyt1 (ENSOSIG00000014449) #9	ENSOSIG00000014450 #12	mylpfb (ENSOSIG00000014452) #13	pgap3 (ENSOSIG00000014497) #14	erbb2 (ENSOSIG00000014515) #15	KCNH2 (ENSOSIG00000016332) #17	TACO1 (ENSOSIG00000016333) #18	pth3r (ENSOSIG00000016334) #19	rundc3ab (ENSOSIG00000016335) #20	ENSOSIG00000016336 #21	ndufa4b (ENSOSIG00000016339) #22	SPOP (ENSOSIG00000016343) #24	ENSOSIG00000016348 #26
Japanese Medaka HdrR	MODERN SPECIES	10	ppp1cab (ENSORLG00000005854)	pelo (ENSORLG00000005827)	PAQR4 (ENSORLG00000005803)	ENSORLG00000005780	TGFB1I1 (ENSORLG00000005775) #7	ELOB (ENSORLG00000030015) #8	pkmyt1 (ENSORLG00000005741) #9	ENSORLG00000005738 #12	pgap3 (ENSORLG00000005720) #14	erbb2 (ENSORLG00000005702) #15	ENSORLG00000005659	TACO1 (ENSORLG00000005652) #18	pth3r (ENSORLG00000005645) #19	rundc3ab (ENSORLG00000005637) #20	ENSORLG00000005608 #21	ndufa4b (ENSORLG00000025082) #22	ENSORLG00000005597 #23	SPOP (ENSORLG00000005591) #24	ENSORLG00000005557 #25	ENSORLG00000005533 #27	ENSORLG00000024647	ENSORLG00000022165	ENSORLG00000030359	ENSORLG00000022011 #27	ENSORLG00000028292	ngfrb (ENSORLG00000027270) #28	slc4a1b (ENSORLG00000005495) #29	ENSORLG00000005485 #30	atxn7l3b (ENSORLG00000005478)	SMARCD2 (ENSORLG00000005467) #31	psmc5 (ENSORLG00000005441) #32
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000164512.d	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000164679 #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT01030000235331
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679.t #26	ENSGT00950000183155.a.a.a.a.b.mb #27	ENSGT01030000236274	ENSGT00950000183155.a.a.a.a.a.b ##27	ENSGT00950000183155.a.a.a.a.b.lb #27	ENSGT00940000164679.s #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k.d #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679.t #26	ENSGT00950000183155.a.a.a.a.b.mb #27	ENSGT01030000236274	ENSGT00950000183155.a.a.a.a.b.lb #27	ENSGT00940000164679.s #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33
Haplochromini	ANCESTRAL SPECIES	17	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841.e.b #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k.d #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679.t #26	ENSGT00950000183155.a.a.a.a.b.mb #27	ENSGT01030000236274	ENSGT00950000183155.a.a.a.a.b.lb #27	ENSGT00940000164679.s #26	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33
Burton s mouthbrooder	MODERN SPECIES	810	ENSHBUG00000005929	TGFB1I1 (ENSHBUG00000005958) #7	ENSHBUG00000005976 #8	pkmyt1 (ENSHBUG00000006044) #9	ENSHBUG00000006057 #10	ENSHBUG00000006072 #11	ENSHBUG00000006090 #12	mylpfb (ENSHBUG00000006128) #13	pgap3 (ENSHBUG00000006153) #14	erbb2 (ENSHBUG00000006177) #15	ENSHBUG00000006213 #17	TACO1 (ENSHBUG00000006221) #18	pth3r (ENSHBUG00000006384) #19	rundc3ab (ENSHBUG00000006419) #20	ENSHBUG00000006446 #21	ndufa4b (ENSHBUG00000006459) #22	ENSHBUG00000000749 #23	SPOP (ENSHBUG00000006480) #24	ENSHBUG00000006487 #25
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841.e.b #19	ENSGT00940000164841.e.a #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k.d #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679.t #26	ENSGT00950000183155.a.a.a.a.b.mb #27	ENSGT01030000236274	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.b.a.a.a.b.b.a #11	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841.e.b #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k.d #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679.t #26	ENSGT00950000183155.a.a.a.a.b.mb #27	ENSGT00530000064692.B.a.a.b.a.c.b.c.a	ENSGT00950000183155.a.a.a.a.b.lb.a.a #27	ENSGT00940000164679.s.a #26	ENSGT00950000183155.a.a.a.a.b.lb.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000167603	ENSGT00940000158253	ENSGT00940000158654 #31	ENSGT01020000230346.F #32
Eastern happy	MODERN SPECIES	15	ENSACLG00000010326	TGFB1I1 (ENSACLG00000010336) #7	ENSACLG00000010350 #8	pkmyt1 (ENSACLG00000010357) #9	ENSACLG00000010360 #11	ENSACLG00000010373 #12	mylpfb (ENSACLG00000010379) #13	pgap3 (ENSACLG00000010390) #14	erbb2 (ENSACLG00000010392) #15	dcaf7 (ENSACLG00000010462) #16	ENSACLG00000010527 #17	TACO1 (ENSACLG00000010544) #18	pth3r (ENSACLG00000010562) #19	rundc3ab (ENSACLG00000010574) #20	ENSACLG00000010599 #21	ndufa4b (ENSACLG00000010626) #22	ENSACLG00000010638 #23	SPOP (ENSACLG00000010661) #24	ENSACLG00000010676 #25	ENSACLG00000010778 #27	ENSACLG00000011265	ENSACLG00000011366 #27	ENSACLG00000011416 #26	ngfrb (ENSACLG00000011419) #28	slc4a1b (ENSACLG00000011432) #29	ENSACLG00000011456	atxn7l3b (ENSACLG00000011477)	SMARCD2 (ENSACLG00000011493) #31	psmc5 (ENSACLG00000011499) #32	MPP3 (ENSACLG00000011529) #33	ENSACLG00000011619
Zebra mbuna	MODERN SPECIES	1111	cep55l (ENSMZEG00005015154)	ENSMZEG00005015110	ENSMZEG00005015102 #36	ENSMZEG00005015032 #35	MPP3 (ENSMZEG00005014985) #33	psmc5 (ENSMZEG00005014956) #32	SMARCD2 (ENSMZEG00005014945) #31	atxn7l3b (ENSMZEG00005014933)	ENSMZEG00005014921	slc4a1b (ENSMZEG00005014912) #29	ngfrb (ENSMZEG00005014900) #28	pth3r (ENSMZEG00005014890) #19	rundc3ab (ENSMZEG00005014869) #20	ENSMZEG00005014858	ENSMZEG00005014848 #21	ndufa4b (ENSMZEG00005014842) #22	ENSMZEG00005014828 #23	SPOP (ENSMZEG00005014808) #24	ENSMZEG00005014797 #25	ENSMZEG00005014769 #27	ENSMZEG00005014744	ENSMZEG00005014730 #27	ENSMZEG00005014720	ENSMZEG00005014702 #27	ENSMZEG00005014693 #26	NXPH3 (ENSMZEG00005014690) #25	SPOP (ENSMZEG00005014681) #24	ENSMZEG00005014654	FAM117A (ENSMZEG00005014647) #21	rundc3ab (ENSMZEG00005014584) #20	pth3r (ENSMZEG00005014515) #19
P. nyererei	MODERN SPECIES	535	pelo (ENSPNYG00000017325)	PAQR4 (ENSPNYG00000017362)	ENSPNYG00000017381	TGFB1I1 (ENSPNYG00000017436) #7	ENSPNYG00000017484 #8	pkmyt1 (ENSPNYG00000017506) #9	ENSPNYG00000017574 #12	mylpfb (ENSPNYG00000017583) #13	pgap3 (ENSPNYG00000017590) #14	erbb2 (ENSPNYG00000017639) #15	ENSPNYG00000017782 #17	TACO1 (ENSPNYG00000017801) #18	pth3r (ENSPNYG00000017830) #19	rundc3ab (ENSPNYG00000017950) #20	ENSPNYG00000018087	ndufa4b (ENSPNYG00000018094) #22	SPOP (ENSPNYG00000018135) #24	ENSPNYG00000018292 #25
Lyretail cichlid	MODERN SPECIES	436	PAQR4 (ENSNBRG00000011793)	ENSNBRG00000011745	TGFB1I1 (ENSNBRG00000011639) #7	ENSNBRG00000011604 #8	pkmyt1 (ENSNBRG00000011577) #9	ENSNBRG00000011566 #11	ENSNBRG00000011548 #12	mylpfb (ENSNBRG00000011528) #13	pgap3 (ENSNBRG00000011491) #14	erbb2 (ENSNBRG00000011460) #15	ENSNBRG00000011139	TACO1 (ENSNBRG00000011026) #18	pth3r (ENSNBRG00000010880) #19	rundc3ab (ENSNBRG00000010786) #20	ENSNBRG00000010761 #21	ndufa4b (ENSNBRG00000010686) #22	ENSNBRG00000010666 #23	SPOP (ENSNBRG00000010651) #24	ENSNBRG00000010634 #25	ENSNBRG00000010597 ##27	ENSNBRG00000010570 #27
Nile tilapia	MODERN SPECIES	20	ENSONIG00000011519	TGFB1I1 (ENSONIG00000011521) #7	ENSONIG00000011524 #8	pkmyt1 (ENSONIG00000011527) #9	ENSONIG00000039985 #10	ENSONIG00000011530 #12	mylpfb (ENSONIG00000011532) #13	pgap3 (ENSONIG00000011535) #14	erbb2 (ENSONIG00000011537) #15	dcaf7 (ENSONIG00000011567) #16	ENSONIG00000011568 #17	TACO1 (ENSONIG00000011570) #18	pth3r (ENSONIG00000011572) #19	rundc3ab (ENSONIG00000011581) #20	ENSONIG00000011585 #21	ndufa4b (ENSONIG00000031058) #22	ENSONIG00000011586 #23	SPOP (ENSONIG00000011587) #24	ENSONIG00000011590 #25	ENSONIG00000027714 ##27	ENSONIG00000038239 #26	ENSONIG00000016477 #27	ENSONIG00000028852 #26	ngfrb (ENSONIG00000031781) #28	slc4a1b (ENSONIG00000016469) #29	ENSONIG00000016468	atxn7l3b (ENSONIG00000036417)	SMARCD2 (ENSONIG00000016465) #31	psmc5 (ENSONIG00000035978) #32	MPP3 (ENSONIG00000016460) #33	ENSONIG00000016455 #35
Midas cichlid	MODERN SPECIES	71	PAQR4 (ENSACIG00000014371)	ENSACIG00000014355	TGFB1I1 (ENSACIG00000014337) #7	ENSACIG00000014326 #8	pkmyt1 (ENSACIG00000014312) #9	ENSACIG00000014292	ENSACIG00000014280 #12	pgap3 (ENSACIG00000014254) #14	erbb2 (ENSACIG00000014118) #15	dcaf7 (ENSACIG00000014092) #16	KCNH2 (ENSACIG00000014075) #17	TACO1 (ENSACIG00000014052) #18	pth3r (ENSACIG00000014009) #19	rundc3ab (ENSACIG00000013902) #20	ENSACIG00000013882 #21	ndufa4b (ENSACIG00000013800) #22	ENSACIG00000013788 #23	SPOP (ENSACIG00000013766) #24	ENSACIG00000013753 #25	ENSACIG00000013745 ##27	ENSACIG00000013730 #27	ENSACIG00000013714 #26	ENSACIG00000013697 #27	ngfrb (ENSACIG00000013690) #28	slc4a1b (ENSACIG00000013654) #29	atxn7l3b (ENSACIG00000013637)	SMARCD2 (ENSACIG00000013435) #31	psmc5 (ENSACIG00000013393) #32	MPP3 (ENSACIG00000013248) #33	ENSACIG00000013220	ENSACIG00000013206
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00940000164679 #26	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37	ENSGT01080000257365.b.a.a.b.b.e
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT01100000263491.a.a.c.a #10	ENSGT00940000155158.q.a	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000164679 #26	ENSGT00940000177899	ENSGT00730000110974.b #28	ENSGT00940000157423.a.b #29	ENSGT00940000169450 #30	ENSGT00940000158654 #31	ENSGT01020000230346.F #32	ENSGT00940000157190.d #33	ENSGT00940000165769 #35	ENSGT00710000106813.B.b #36	ENSGT00940000161586.d #37
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00520000055649.b	ENSGT00940000160447 #7	ENSGT00390000018316.a.e #8	ENSGT00940000159427 #9	ENSGT00940000155158.q.a	ENSGT00940000164923.a.a #12	ENSGT00940000159038.a.a #13	ENSGT00390000001304 #14	ENSGT00940000158232 #15	ENSGT00390000006939.i.a #16	ENSGT00940000159846.a.a.d #17	ENSGT00390000012820 #18	ENSGT00940000164841 #19	ENSGT00940000158922.c #20	ENSGT00950000183046.a.b.k #21	ENSGT00940000154268.k.b #22	ENSGT00390000003044 #23	ENSGT00940000154376.a.b #24	ENSGT00950000182883.a.a.b #25	ENSGT00950000183155.a.a.a.a.b #27	ENSGT00940000164679 #26
Clown anemonefish	MODERN SPECIES	1665						ENSAOCG00000005624 #12	mylpfb (ENSAOCG00000005637) #13	pgap3 (ENSAOCG00000005663) #14	erbb2 (ENSAOCG00000005685) #15	dcaf7 (ENSAOCG00000005728) #16	KCNH2 (ENSAOCG00000006042) #17	TACO1 (ENSAOCG00000006109) #18	pth3r (ENSAOCG00000006126) #19	rundc3ab (ENSAOCG00000002346) #20	ENSAOCG00000002203 #21	ndufa4b (ENSAOCG00000006205) #22	ENSAOCG00000006230 #23	SPOP (ENSAOCG00000006266) #24	NXPH3 (ENSAOCG00000000297) #25	ENSAOCG00000006427 #27	tmigd1 (ENSAOCG00000006460)	ENSAOCG00000006480	cct8 (ENSAOCG00000006551)	ENSAOCG00000006575	aldocb (ENSAOCG00000006588)	pigs (ENSAOCG00000000331)	srsf1b (ENSAOCG00000000337)	dynll2b (ENSAOCG00000000341)	ENSAOCG00000006775	heatr6 (ENSAOCG00000006882)	ddx52 (ENSAOCG00000000356)
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000011299	TGFB1I1 (ENSAPEG00000011357) #7	ENSAPEG00000011413 ##8	pkmyt1 (ENSAPEG00000011438) #9	RHOG (ENSAPEG00000011455)	ENSAPEG00000011559 #12	mylpfb (ENSAPEG00000011641) #13	pgap3 (ENSAPEG00000012807) #14	erbb2 (ENSAPEG00000012879) #15	dcaf7 (ENSAPEG00000012985) #16	ENSAPEG00000013007 #17	TACO1 (ENSAPEG00000013022) #18	pth3r (ENSAPEG00000013042) #19	rundc3ab (ENSAPEG00000013139) #20	ENSAPEG00000013151 #21	ndufa4b (ENSAPEG00000013164) #22	ENSAPEG00000013182 #23	SPOP (ENSAPEG00000013194) #24	NXPH3 (ENSAPEG00000013244) #25	ENSAPEG00000013248 #27	ENSAPEG00000013269 #26	ENSAPEG00000013294 #27	QRFPR (ENSAPEG00000013309)	polr3a (ENSAPEG00000013351)	ZMIZ1 (ENSAPEG00000013474)	PPIF (ENSAPEG00000013551)	ZCCHC24 (ENSAPEG00000013587)	ENSAPEG00000013594	DLG5 (ENSAPEG00000013628)	KCNMA1 (ENSAPEG00000013824)	ZNF503 (ENSAPEG00000014033)
Spiny chromis	MODERN SPECIES	402	ENSAPOG00000022988	TGFB1I1 (ENSAPOG00000022933) #7	ELOB (ENSAPOG00000022871) #8	pkmyt1 (ENSAPOG00000022863) #9	ENSAPOG00000022850 #10	ENSAPOG00000022804 #12	mylpfb (ENSAPOG00000022794) #13	pgap3 (ENSAPOG00000000649) #14	erbb2 (ENSAPOG00000022725) #15	dcaf7 (ENSAPOG00000022618) #16	ENSAPOG00000022597 #17	TACO1 (ENSAPOG00000022562) #18	pth3r (ENSAPOG00000022539) #19	rundc3ab (ENSAPOG00000022350) #20	ENSAPOG00000022310 #21	ndufa4b (ENSAPOG00000022293) #22	ENSAPOG00000000633 #23	SPOP (ENSAPOG00000022249) #24	NXPH3 (ENSAPOG00000022238) #25	ENSAPOG00000022229 #26	ENSAPOG00000022210	ENSAPOG00000022201 #27	ngfrb (ENSAPOG00000022183) #28	slc4a1b (ENSAPOG00000022140) #29	ENSAPOG00000021727 #30	atxn7l3b (ENSAPOG00000021683)	SMARCD2 (ENSAPOG00000021653) #31	psmc5 (ENSAPOG00000021593) #32
Bicolor damselfish	MODERN SPECIES	556				SLC45A4 (ENSSPAG00000015134)	ENSSPAG00000015102	cfap20 (ENSSPAG00000015090)	dgat1a (ENSSPAG00000015022)	zgc:63863 (ENSSPAG00000014986)	pgap3 (ENSSPAG00000014967) #14	erbb2 (ENSSPAG00000014915) #15	ENSSPAG00000014887 #17	TACO1 (ENSSPAG00000014875) #18	pth3r (ENSSPAG00000014705) #19	rundc3ab (ENSSPAG00000014585) #20	ENSSPAG00000014555 #21	ndufa4b (ENSSPAG00000014529) #22	ENSSPAG00000014509 #23	SPOP (ENSSPAG00000014477) #24	NXPH3 (ENSSPAG00000014470) #25	ENSSPAG00000014404 #27	ngfrb (ENSSPAG00000014389) #28	slc4a1b (ENSSPAG00000013930) #29	ENSSPAG00000013674 #30	atxn7l3b (ENSSPAG00000013652)	SMARCD2 (ENSSPAG00000013616) #31	psmc5 (ENSSPAG00000013577) #32	ENSSPAG00000013524
Tiger tail seahorse	MODERN SPECIES	330							ENSHCOG00000017097 #12	mylpfb (ENSHCOG00000017125) #13	pgap3 (ENSHCOG00000017148) #14	erbb2 (ENSHCOG00000017162) #15	ENSHCOG00000017177	ENSHCOG00000017185 #18	pth3r (ENSHCOG00000017340) #19	rundc3ab (ENSHCOG00000017450) #20	ENSHCOG00000017461	ndufa4b (ENSHCOG00000017472) #22	ENSHCOG00000017481 #23	SPOP (ENSHCOG00000017490) #24	ngfrb (ENSHCOG00000017499) #28	slc4a1b (ENSHCOG00000017514) #29	atxn7l3b (ENSHCOG00000017531)	SMARCD2 (ENSHCOG00000017540) #31	psmc5 (ENSHCOG00000017546) #32	MPP3 (ENSHCOG00000017555) #33	ENSHCOG00000017738 #35	CAPN15 (ENSHCOG00000017804)	MSS51 (ENSHCOG00000017813)	cog7 (ENSHCOG00000017857)	ENSHCOG00000017885	HS3ST6 (ENSHCOG00000017896)	LRRC4B (ENSHCOG00000017914)
Pinecone sodierfish	MODERN SPECIES	10	ELOB (ENSMMDG00005024353) #8	pkmyt1 (ENSMMDG00005024351) #9	RHOG (ENSMMDG00005024350)	ENSMMDG00005024349 #11	ENSMMDG00005024348 #11	ENSMMDG00005024346 #12	mylpfb (ENSMMDG00005024344) #13	pgap3 (ENSMMDG00005024338) #14	erbb2 (ENSMMDG00005024319) #15	dcaf7 (ENSMMDG00005024313) #16	ENSMMDG00005024311	TACO1 (ENSMMDG00005024310) #18	pth3r (ENSMMDG00005024308) #19	rundc3ab (ENSMMDG00005024305) #20	ENSMMDG00005024304 #21	ndufa4b (ENSMMDG00005024302) #22	ENSMMDG00005024301 #23	SPOP (ENSMMDG00005024296) #24	ENSMMDG00005024292 #25	ENSMMDG00005024283 #27	ENSMMDG00005024271 ##27	ENSMMDG00005024265 #27	ngfrb (ENSMMDG00005024262) #28	slc4a1b (ENSMMDG00005024239) #29	ENSMMDG00005024237	atxn7l3b (ENSMMDG00005024235)	SMARCD2 (ENSMMDG00005024054) #31	psmc5 (ENSMMDG00005023958) #32	MPP3 (ENSMMDG00005023854) #33	ENSMMDG00005023811 #35	ENSMMDG00005023804
Cod	MODERN SPECIES	9	ENSGMOG00000031818	ENSGMOG00000001605	ENSGMOG00000027670	ENSGMOG00000034461	ENSGMOG00000036498	ENSGMOG00000014387	ENSGMOG00000025596	map2k4b (ENSGMOG00000008589)	adprm (ENSGMOG00000019361)	ENSGMOG00000024566	ENSGMOG00000019360	ENSGMOG00000024505 #18	ENSGMOG00000019351 #19	ENSGMOG00000019347	ENSGMOG00000022721	ENSGMOG00000004451 #22	ENSGMOG00000028370	ENSGMOG00000036863	ENSGMOG00000018186 #24	ENSGMOG00000005140 #28	ENSGMOG00000025496	slc16a12b (ENSGMOG00000005222)	PANK1 (ENSGMOG00000029465)	ENSGMOG00000035176	rpp30 (ENSGMOG00000005379)	ENSGMOG00000010461	ENSGMOG00000031214	ENSGMOG00000011719	ENSGMOG00000022630	ENSGMOG00000014001	ENSGMOG00000014033