Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b	ENSGT01100000263515.a.b.a.b.a.h	ENSGT00930000151045.f	ENSGT00390000001390.b
Perciformes	ANCESTRAL SPECIES	9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a	ENSGT00940000171105	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b	ENSGT01100000263515.a.b.a.b.a.h	ENSGT00930000151045.f	ENSGT00390000001390.b
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a	ENSGT00940000171105	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b	ENSGT01100000263515.a.b.a.b.a.h	ENSGT00930000151045.f	ENSGT00390000001390.b
Pike perch	MODERN SPECIES	3	ENSSLUG00000007535 #7	ENSSLUG00000007546 #8	ENSSLUG00000007554 #9	ENSSLUG00000007564 #10	mybpc2b (ENSSLUG00000007632) #11	ENSSLUG00000008501 #12	LRRC4B (ENSSLUG00000008516) #13	ENSSLUG00000008519 #14	USP31 (ENSSLUG00000008523) #15	cog7 (ENSSLUG00000008549) #16	MSS51 (ENSSLUG00000008603) #17	MSS51 (ENSSLUG00000008611) #18	CAPN15 (ENSSLUG00000008620) #19	ENSSLUG00000008629 #20	ENSSLUG00000008640 #21	nog2 (ENSSLUG00000008648) #22	ntn2 (ENSSLUG00000008652) #23	ENSSLUG00000008663 #24	TBC1D24 (ENSSLUG00000008676) #25	ATP6V0C (ENSSLUG00000008682) #26	nubp2 (ENSSLUG00000008697) #27	ENSSLUG00000008704 #28	ENSSLUG00000008708 #29	ENSSLUG00000008716 #30
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000022417	ENSCGOG00000022458 #7	ENSCGOG00000022460 #8	ENSCGOG00000022462 #9	ENSCGOG00000022464 #10	mybpc2b (ENSCGOG00000022522) #11	ENSCGOG00000023638 #12	LRRC4B (ENSCGOG00000023642) #13	HS3ST2 (ENSCGOG00000023645)	cog7 (ENSCGOG00000023661) #16	ENSCGOG00000023755	ENSCGOG00000023757	MSS51 (ENSCGOG00000023759) #18	ENSCGOG00000023766 #21	ENSCGOG00000023771	nog2 (ENSCGOG00000023772) #22	ntn2 (ENSCGOG00000023774) #23	ENSCGOG00000023779 #24	TBC1D24 (ENSCGOG00000023787) #25	ATP6V0C (ENSCGOG00000023789) #26	nubp2 (ENSCGOG00000023793) #27	ENSCGOG00000023798 #28	ENSCGOG00000002375 #29	ENSCGOG00000002387 #30	ablim1b (ENSCGOG00000002421)	MPRIP (ENSCGOG00000002508)	ENSCGOG00000002842	PRR35 (ENSCGOG00000002848)	metrn (ENSCGOG00000002854)	ENSCGOG00000002857	IFT140 (ENSCGOG00000002896)
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00930000151196.a.b #8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b	ENSGT01100000263515.a.b.a.b.a.h	ENSGT00930000151045.f	ENSGT00390000001390.b
Lumpfish	MODERN SPECIES	10	PPFIA3 (ENSCLMG00005011890)	ENSCLMG00005011887 #7	ENSCLMG00005011885 #8	ENSCLMG00005011884 #9	ENSCLMG00005011883 #10	mybpc2b (ENSCLMG00005011580) #11	ENSCLMG00005011566 #12	LRRC4B (ENSCLMG00005011538) #13	ENSCLMG00005011534 #14	USP31 (ENSCLMG00005011531) #15	cog7 (ENSCLMG00005011481) #16	MSS51 (ENSCLMG00005011476) #17	ENSCLMG00005011475 #18	CAPN15 (ENSCLMG00005011469) #19	ENSCLMG00005011462 #21	nog2 (ENSCLMG00005011461) #22	ntn2 (ENSCLMG00005011460) #23	ENSCLMG00005011457 #24	TBC1D24 (ENSCLMG00005011375) #25	ATP6V0C (ENSCLMG00005011370) #26	nubp2 (ENSCLMG00005011341) #27	ENSCLMG00005011338 #28	ENSCLMG00005011337 #29	ENSCLMG00005011321 #30	ENSCLMG00005011315	MPRIP (ENSCLMG00005011092)	ENSCLMG00005011088	ENSCLMG00005011085	PRR35 (ENSCLMG00005011084)	crp2 (ENSCLMG00005011083)	stub1 (ENSCLMG00005011082)
Stickleback	MODERN SPECIES	5	ENSGACG00000008100	ENSGACG00000008107 #10	mybpc2b (ENSGACG00000008110) #11	ENSGACG00000008187 #12	LRRC4B (ENSGACG00000008204) #13	ENSGACG00000008205	HS3ST2 (ENSGACG00000008211)	ENSGACG00000008213	USP31 (ENSGACG00000008214) #15	cog7 (ENSGACG00000008223) #16	ENSGACG00000008231	MSS51 (ENSGACG00000008232) #18	ENSGACG00000008245	ENSGACG00000008248 #19	ENSGACG00000008256 #21	nog2 (ENSGACG00000008267) #22	ntn2 (ENSGACG00000008270) #23	ENSGACG00000008273 #24	TBC1D24 (ENSGACG00000008278) #25	ATP6V0C (ENSGACG00000008293) #26	nubp2 (ENSGACG00000008320) #27	ENSGACG00000008335 #28	ENSGACG00000008342 #29	ENSGACG00000008345	ENSGACG00000008354 #30	ablim1b (ENSGACG00000008370)	MPRIP (ENSGACG00000008379)	ENSGACG00000008397	PRR35 (ENSGACG00000008401)	crp2 (ENSGACG00000008405)	stub1 (ENSGACG00000008414)
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b #8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b	ENSGT01100000263515.a.b.a.b.a.h	ENSGT00930000151045.f	ENSGT00390000001390.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b #8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b	ENSGT01100000263515.a.b.a.b.a.h	ENSGT00930000151045.f	ENSGT00390000001390.b
European seabass	MODERN SPECIES	11	ENSDLAG00005009944	ENSDLAG00005009857 #7	ENSDLAG00005009847 #8	ENSDLAG00005009831 #9	ENSDLAG00005009828 #10	ENSDLAG00005009509 #11	ENSDLAG00005009401 #12	LRRC4B (ENSDLAG00005027065) #13	ENSDLAG00005009392	HS3ST2 (ENSDLAG00005009389)	ENSDLAG00005009372 #15	COG7 (ENSDLAG00005009341) #16	ENSDLAG00005034965 #17	ENSDLAG00005009199 #19	ENSDLAG00005009161 #21	nog2 (ENSDLAG00005009159) #22	ntn2 (ENSDLAG00005009141) #23	ENSDLAG00005009119 #24	ENSDLAG00005009116 #25	VATL (ENSDLAG00005030834) #26	nubp2 (ENSDLAG00005009011) #27	ENSDLAG00005033812 #28	ENSDLAG00005032822 #29	ENSDLAG00005008970 #30	ENSDLAG00005008922	ENSDLAG00005007478	ENSDLAG00005007415	ENSDLAG00005007396	ENSDLAG00005007389	ENSDLAG00005007372	metrn (ENSDLAG00005027335)
Large yellow croaker	MODERN SPECIES	488	PPFIA3 (ENSLCRG00005007020)	ENSLCRG00005007158 #7	ENSLCRG00005007160 #8	ENSLCRG00005007161 #9	ENSLCRG00005007162 #10	mybpc2b (ENSLCRG00005007183) #11	ENSLCRG00005010195 #12	LRRC4B (ENSLCRG00005010197) #13	ENSLCRG00005010199 #14	USP31 (ENSLCRG00005010204) #15	cog7 (ENSLCRG00005010213) #16	MSS51 (ENSLCRG00005010219) #17	MSS51 (ENSLCRG00005010220) #18	CAPN15 (ENSLCRG00005010225) #19	ENSLCRG00005010420 #21	nog2 (ENSLCRG00005010428) #22	ntn2 (ENSLCRG00005010430) #23	ENSLCRG00005010432 #24	TBC1D24 (ENSLCRG00005010433) #25	ATP6V0C (ENSLCRG00005010434) #26	nubp2 (ENSLCRG00005010439) #27	ENSLCRG00005010521 #28	ENSLCRG00005010524 #29	ENSLCRG00005010525 #30	ablim1b (ENSLCRG00005010527)	MPRIP (ENSLCRG00005010537)	ENSLCRG00005011143	PRR35 (ENSLCRG00005011147)	crp2 (ENSLCRG00005011150)	stub1 (ENSLCRG00005007262)	metrn (ENSLCRG00005007265)
Gilthead seabream	MODERN SPECIES	12	PPFIA3 (ENSSAUG00010023520)	ENSSAUG00010023491 #7	ENSSAUG00010023489 #8	ENSSAUG00010023488 #9	ENSSAUG00010023487 #10	mybpc2b (ENSSAUG00010016277) #11	ENSSAUG00010016199 #12	LRRC4B (ENSSAUG00010016196) #13	HS3ST2 (ENSSAUG00010016195)	USP31 (ENSSAUG00010016188) #15	cog7 (ENSSAUG00010016184) #16	MSS51 (ENSSAUG00010016183) #17	MSS51 (ENSSAUG00010016181) #18	CAPN15 (ENSSAUG00010016176) #19	ENSSAUG00010016172 #21	nog2 (ENSSAUG00010016171) #22	ntn2 (ENSSAUG00010016169) #23	ENSSAUG00010016162 #24	TBC1D24 (ENSSAUG00010016158) #25	ATP6V0C (ENSSAUG00010016151) ##26	nubp2 (ENSSAUG00010016136) #27	ENSSAUG00010016130 #28	ENSSAUG00010018228 #29	ENSSAUG00010018226 #30	ablim1b (ENSSAUG00010016992)	MPRIP (ENSSAUG00010016963)	ENSSAUG00010016957	PRR35 (ENSSAUG00010016954)	crp2 (ENSSAUG00010016953)	stub1 (ENSSAUG00010016951)	metrn (ENSSAUG00010016950)