Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000164220.g.a	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.m ##14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Ballan wrasse	MODERN SPECIES	103	ENSLBEG00000013029 #7	ENSLBEG00000013054 #8	ENSLBEG00000013069 #9	mybpc2b (ENSLBEG00000013094) #10	ENSLBEG00000013177 #11	LRRC4B (ENSLBEG00000013211) #12	ENSLBEG00000013243 #13	USP31 (ENSLBEG00000013316) #14	cog7 (ENSLBEG00000013453) #15	ENSLBEG00000013548 #16	MSS51 (ENSLBEG00000013561) #17	MSS51 (ENSLBEG00000013576) #18	CAPN15 (ENSLBEG00000013641) #19	ENSLBEG00000013719 #20	ENSLBEG00000013738 #21	nog2 (ENSLBEG00000013774) #22	ntn2 (ENSLBEG00000013806) #23	ENSLBEG00000013844 #24	TBC1D24 (ENSLBEG00000013880) #25	ATP6V0C (ENSLBEG00000013910) #26	nubp2 (ENSLBEG00000013929) #27	ENSLBEG00000013963 #28	ENSLBEG00000014000 #29	ENSLBEG00000014037 #30	ablim1b (ENSLBEG00000014091) #31	MPRIP (ENSLBEG00000014183) #32	ENSLBEG00000014299 #33	ENSLBEG00000014324 #34	crp2 (ENSLBEG00000014340) #35	stub1 (ENSLBEG00000014362) #36	metrn (ENSLBEG00000014389) #37
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Perciformes	ANCESTRAL SPECIES	9	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000171105	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Lumpfish	MODERN SPECIES	10	PPFIA3 (ENSCLMG00005011890)	ENSCLMG00005011887	ENSCLMG00005011885 #7	ENSCLMG00005011884 #8	ENSCLMG00005011883 #9	mybpc2b (ENSCLMG00005011580) #10	ENSCLMG00005011566 #11	LRRC4B (ENSCLMG00005011538) #12	ENSCLMG00005011534 #13	USP31 (ENSCLMG00005011531) #14	cog7 (ENSCLMG00005011481) #15	MSS51 (ENSCLMG00005011476) #17	ENSCLMG00005011475 #18	CAPN15 (ENSCLMG00005011469) #19	ENSCLMG00005011462 #21	nog2 (ENSCLMG00005011461) #22	ntn2 (ENSCLMG00005011460) #23	ENSCLMG00005011457 #24	TBC1D24 (ENSCLMG00005011375) #25	ATP6V0C (ENSCLMG00005011370) #26	nubp2 (ENSCLMG00005011341) #27	ENSCLMG00005011338 #28	ENSCLMG00005011337 #29	ENSCLMG00005011321 #30	ENSCLMG00005011315 #31	MPRIP (ENSCLMG00005011092) #32	ENSCLMG00005011088 #33	ENSCLMG00005011085	PRR35 (ENSCLMG00005011084) #34	crp2 (ENSCLMG00005011083) #35	stub1 (ENSCLMG00005011082) #36
Stickleback	MODERN SPECIES	5	ENSGACG00000008100	ENSGACG00000008107 #9	mybpc2b (ENSGACG00000008110) #10	ENSGACG00000008187 #11	LRRC4B (ENSGACG00000008204) #12	ENSGACG00000008205	HS3ST2 (ENSGACG00000008211)	ENSGACG00000008213	USP31 (ENSGACG00000008214) #14	cog7 (ENSGACG00000008223) #15	ENSGACG00000008231 #16	MSS51 (ENSGACG00000008232) #18	ENSGACG00000008245	ENSGACG00000008248 #19	ENSGACG00000008256 #21	nog2 (ENSGACG00000008267) #22	ntn2 (ENSGACG00000008270) #23	ENSGACG00000008273 #24	TBC1D24 (ENSGACG00000008278) #25	ATP6V0C (ENSGACG00000008293) #26	nubp2 (ENSGACG00000008320) #27	ENSGACG00000008335 #28	ENSGACG00000008342 #29	ENSGACG00000008345	ENSGACG00000008354 #30	ablim1b (ENSGACG00000008370) #31	MPRIP (ENSGACG00000008379) #32	ENSGACG00000008397	PRR35 (ENSGACG00000008401) #34	crp2 (ENSGACG00000008405) #35	stub1 (ENSGACG00000008414) #36
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000171105	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000022417	ENSCGOG00000022458	ENSCGOG00000022460 #7	ENSCGOG00000022462 #8	ENSCGOG00000022464 #9	mybpc2b (ENSCGOG00000022522) #10	ENSCGOG00000023638 #11	LRRC4B (ENSCGOG00000023642) #12	HS3ST2 (ENSCGOG00000023645)	cog7 (ENSCGOG00000023661) #15	ENSCGOG00000023755 #16	ENSCGOG00000023757	MSS51 (ENSCGOG00000023759) #18	ENSCGOG00000023766 #21	ENSCGOG00000023771	nog2 (ENSCGOG00000023772) #22	ntn2 (ENSCGOG00000023774) #23	ENSCGOG00000023779 #24	TBC1D24 (ENSCGOG00000023787) #25	ATP6V0C (ENSCGOG00000023789) #26	nubp2 (ENSCGOG00000023793) #27	ENSCGOG00000023798 #28	ENSCGOG00000002375 #29	ENSCGOG00000002387 #30	ablim1b (ENSCGOG00000002421) #31	MPRIP (ENSCGOG00000002508) #32	ENSCGOG00000002842 #33	PRR35 (ENSCGOG00000002848) #34	metrn (ENSCGOG00000002854) #37	ENSCGOG00000002857	IFT140 (ENSCGOG00000002896)
Pike perch	MODERN SPECIES	3	ENSSLUG00000007535	ENSSLUG00000007546 #7	ENSSLUG00000007554 #8	ENSSLUG00000007564 #9	mybpc2b (ENSSLUG00000007632) #10	ENSSLUG00000008501 #11	LRRC4B (ENSSLUG00000008516) #12	ENSSLUG00000008519 #13	USP31 (ENSSLUG00000008523) #14	cog7 (ENSSLUG00000008549) #15	MSS51 (ENSSLUG00000008603) #17	MSS51 (ENSSLUG00000008611) #18	CAPN15 (ENSSLUG00000008620) #19	ENSSLUG00000008629	ENSSLUG00000008640 #21	nog2 (ENSSLUG00000008648) #22	ntn2 (ENSSLUG00000008652) #23	ENSSLUG00000008663 #24	TBC1D24 (ENSSLUG00000008676) #25	ATP6V0C (ENSSLUG00000008682) #26	nubp2 (ENSSLUG00000008697) #27	ENSSLUG00000008704 #28	ENSSLUG00000008708 #29	ENSSLUG00000008716 #30
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
European seabass	MODERN SPECIES	11	ENSDLAG00005009944	ENSDLAG00005009857	ENSDLAG00005009847 #7	ENSDLAG00005009831 #8	ENSDLAG00005009828 #9	ENSDLAG00005009509 #10	ENSDLAG00005009401 #11	LRRC4B (ENSDLAG00005027065) #12	ENSDLAG00005009392	HS3ST2 (ENSDLAG00005009389)	ENSDLAG00005009372 #14	COG7 (ENSDLAG00005009341) #15	ENSDLAG00005034965 #17	ENSDLAG00005009199 #19	ENSDLAG00005009161 #21	nog2 (ENSDLAG00005009159) #22	ntn2 (ENSDLAG00005009141) #23	ENSDLAG00005009119 #24	ENSDLAG00005009116 #25	VATL (ENSDLAG00005030834) #26	nubp2 (ENSDLAG00005009011) #27	ENSDLAG00005033812 #28	ENSDLAG00005032822 #29	ENSDLAG00005008970 #30	ENSDLAG00005008922 #31	ENSDLAG00005007478 #32	ENSDLAG00005007415	ENSDLAG00005007396 #34	ENSDLAG00005007389 #35	ENSDLAG00005007372 #36	metrn (ENSDLAG00005027335) #37
Large yellow croaker	MODERN SPECIES	488	PPFIA3 (ENSLCRG00005007020)	ENSLCRG00005007158	ENSLCRG00005007160 #7	ENSLCRG00005007161 #8	ENSLCRG00005007162 #9	mybpc2b (ENSLCRG00005007183) #10	ENSLCRG00005010195 #11	LRRC4B (ENSLCRG00005010197) #12	ENSLCRG00005010199 #13	USP31 (ENSLCRG00005010204) #14	cog7 (ENSLCRG00005010213) #15	MSS51 (ENSLCRG00005010219) #17	MSS51 (ENSLCRG00005010220) #18	CAPN15 (ENSLCRG00005010225) #19	ENSLCRG00005010420 #21	nog2 (ENSLCRG00005010428) #22	ntn2 (ENSLCRG00005010430) #23	ENSLCRG00005010432 #24	TBC1D24 (ENSLCRG00005010433) #25	ATP6V0C (ENSLCRG00005010434) #26	nubp2 (ENSLCRG00005010439) #27	ENSLCRG00005010521 #28	ENSLCRG00005010524 #29	ENSLCRG00005010525 #30	ablim1b (ENSLCRG00005010527) #31	MPRIP (ENSLCRG00005010537) #32	ENSLCRG00005011143 #33	PRR35 (ENSLCRG00005011147) #34	crp2 (ENSLCRG00005011150) #35	stub1 (ENSLCRG00005007262) #36	metrn (ENSLCRG00005007265) #37
Gilthead seabream	MODERN SPECIES	12	PPFIA3 (ENSSAUG00010023520)	ENSSAUG00010023491	ENSSAUG00010023489 #7	ENSSAUG00010023488 #8	ENSSAUG00010023487 #9	mybpc2b (ENSSAUG00010016277) #10	ENSSAUG00010016199 #11	LRRC4B (ENSSAUG00010016196) #12	HS3ST2 (ENSSAUG00010016195)	USP31 (ENSSAUG00010016188) #14	cog7 (ENSSAUG00010016184) #15	MSS51 (ENSSAUG00010016183) #17	MSS51 (ENSSAUG00010016181) #18	CAPN15 (ENSSAUG00010016176) #19	ENSSAUG00010016172 #21	nog2 (ENSSAUG00010016171) #22	ntn2 (ENSSAUG00010016169) #23	ENSSAUG00010016162 #24	TBC1D24 (ENSSAUG00010016158) #25	ATP6V0C (ENSSAUG00010016151) ##26	nubp2 (ENSSAUG00010016136) #27	ENSSAUG00010016130 #28	ENSSAUG00010018228 #29	ENSSAUG00010018226 #30	ablim1b (ENSSAUG00010016992) #31	MPRIP (ENSSAUG00010016963) #32	ENSSAUG00010016957	PRR35 (ENSSAUG00010016954) #34	crp2 (ENSSAUG00010016953) #35	stub1 (ENSSAUG00010016951) #36	metrn (ENSSAUG00010016950) #37
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Fugu	MODERN SPECIES		ENSTRUG00000013290	ENSTRUG00000013329	PPFIA3 (ENSTRUG00000013342)	ENSTRUG00000027287	ENSTRUG00000028919 #7	ENSTRUG00000024447 #8	mybpc2b (ENSTRUG00000013734) #10	ENSTRUG00000013930 #11	LRRC4B (ENSTRUG00000002618) #12	ENSTRUG00000014088 #13	cog7 (ENSTRUG00000014115) #15	MSS51 (ENSTRUG00000032136) #17	MSS51 (ENSTRUG00000014257) #18	CAPN15 (ENSTRUG00000014283) #19	ENSTRUG00000031750 #21	nog2 (ENSTRUG00000014323) #22	ntn2 (ENSTRUG00000014332) #23	TBC1D24 (ENSTRUG00000014498) #25	ENSTRUG00000025985 #28	ENSTRUG00000023248 #29	ENSTRUG00000014585 #30	ABLIM1 (ENSTRUG00000027510) #31	MPRIP (ENSTRUG00000014685) #32	ENSTRUG00000025439 #34	crp2 (ENSTRUG00000014803) #35	stub1 (ENSTRUG00000014817) #36	metrn (ENSTRUG00000025221) #37	tmem204 (ENSTRUG00000028725)	IFT140 (ENSTRUG00000014865)	telo2 (ENSTRUG00000014963)	rab11fip3 (ENSTRUG00000015066)
Tetraodon	MODERN SPECIES	13	tlcd3ba (ENSTNIG00000006532)	ENSTNIG00000001006	ENSTNIG00000006576	PPFIA3 (ENSTNIG00000006577)	mybpc2b (ENSTNIG00000012787) #10	ENSTNIG00000012788 #11	LRRC4B (ENSTNIG00000012789) #12	ENSTNIG00000012790 #13	USP31 (ENSTNIG00000012791) #14	cog7 (ENSTNIG00000012792) #15	MSS51 (ENSTNIG00000012793) #17	MSS51 (ENSTNIG00000012794) #18	ENSTNIG00000001735 #19	ENSTNIG00000012795 #19	ENSTNIG00000012796 #21	nog2 (ENSTNIG00000012797) #22	ntn2 (ENSTNIG00000012798) #23	ENSTNIG00000012799 #24	TBC1D24 (ENSTNIG00000012800) #25	ATP6V0C (ENSTNIG00000012801) #26	nubp2 (ENSTNIG00000012802) #27	ENSTNIG00000012803 #28	ENSTNIG00000012804 #29	ENSTNIG00000012805 #30	ENSTNIG00000001356 #30	ABLIM1 (ENSTNIG00000012806) #31	MPRIP (ENSTNIG00000012807) #32	PRR35 (ENSTNIG00000012808) #34	crp2 (ENSTNIG00000000855) #35	stub1 (ENSTNIG00000012809) #36	metrn (ENSTNIG00000012810) #37
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000011134	ENSMAMG00000026681 #7	ENSMAMG00000011121 #8	ENSMAMG00000011107 #9	ENSMAMG00000011018 #10	ENSMAMG00000010966 #11	ENSMAMG00000010950 #12	ENSMAMG00000010942	ENSMAMG00000010936 #13	ENSMAMG00000010891 #14	ENSMAMG00000010856 #15	ENSMAMG00000010812 #17	ENSMAMG00000026355 #18	ENSMAMG00000010762 #19	ENSMAMG00000010756	nog2 (ENSMAMG00000010740) #22	ntn2 (ENSMAMG00000010731) #23	ENSMAMG00000010692 #24	ENSMAMG00000010662 #25	ATP6V0C (ENSMAMG00000025214) #26	nubp2 (ENSMAMG00000010637) #27	ENSMAMG00000010617 #28	ENSMAMG00000010583 #29	ENSMAMG00000010548 #30	ENSMAMG00000010525 #31	ENSMAMG00000010355	ENSMAMG00000010337 #34	ENSMAMG00000010328 #35	ENSMAMG00000010308 #36	metrn (ENSMAMG00000010298) #37	tmem204 (ENSMAMG00000025271)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Climbing perch	MODERN SPECIES	10	ENSATEG00000017515	ENSATEG00000017494	ENSATEG00000017470 #7	ENSATEG00000017459 #8	ENSATEG00000029745 #9	ENSATEG00000017258 #10	ENSATEG00000017164 #11	ENSATEG00000028786 #12	ENSATEG00000017107 #13	ENSATEG00000017057 #14	ENSATEG00000016997 #15	ENSATEG00000026789 #17	ENSATEG00000030151 #18	ENSATEG00000016822 #19	ENSATEG00000016799 #21	nog2 (ENSATEG00000016782) #22	ntn2 (ENSATEG00000016766) #23	ENSATEG00000016755 #24	ENSATEG00000016732 #25	ATP6V0C (ENSATEG00000016719) #26	nubp2 (ENSATEG00000016699) #27	ENSATEG00000016686 #28	ENSATEG00000016671 #29	ENSATEG00000016644 #30	ENSATEG00000016599 #31	ENSATEG00000016451 #32	ENSATEG00000016425 #33	ENSATEG00000016409 #34	ENSATEG00000027066 #35	ENSATEG00000016370 #36	metrn (ENSATEG00000016359) #37
Siamese fighting fish	MODERN SPECIES	9	fgf21 (ENSBSLG00000008833)	PPFIA3 (ENSBSLG00000007913)	ENSBSLG00000007380	ENSBSLG00000007365 #7	ENSBSLG00000007361 #8	mybpc2b (ENSBSLG00000007218) #10	ENSBSLG00000006696 #11	LRRC4B (ENSBSLG00000005923) #12	HS3ST2 (ENSBSLG00000005918)	USP31 (ENSBSLG00000005887) #14	cog7 (ENSBSLG00000005525) #15	MSS51 (ENSBSLG00000005455) #17	ENSBSLG00000005423 #18	ENSBSLG00000005415 #19	ENSBSLG00000005142 #21	nog2 (ENSBSLG00000005108) #22	ntn2 (ENSBSLG00000005025) #23	ENSBSLG00000004980 #24	TBC1D24 (ENSBSLG00000020690) #25	ATP6V0C (ENSBSLG00000020689) #26	nubp2 (ENSBSLG00000020683) #27	ENSBSLG00000020675 #28	ENSBSLG00000020673 #30	ABLIM1 (ENSBSLG00000020669) #31	PRR35 (ENSBSLG00000020664) #34	crp2 (ENSBSLG00000020662) #35	stub1 (ENSBSLG00000020657) #36	metrn (ENSBSLG00000020656) #37	ENSBSLG00000020655	tmem204 (ENSBSLG00000020653)	IFT140 (ENSBSLG00000020602)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Greater amberjack	MODERN SPECIES	27	PPFIA3 (ENSSDUG00000023357)	ENSSDUG00000000073	ENSSDUG00000000135 #8	ENSSDUG00000000162 #9	mybpc2b (ENSSDUG00000000197) #10	ENSSDUG00000000332 #11	LRRC4B (ENSSDUG00000000408) #12	ENSSDUG00000000439 #13	USP31 (ENSSDUG00000000463) #14	cog7 (ENSSDUG00000000519) #15	ENSSDUG00000000587 #16	MSS51 (ENSSDUG00000000606) #17	MSS51 (ENSSDUG00000000640) #18	CAPN15 (ENSSDUG00000000678) #19	ENSSDUG00000000750 #21	nog2 (ENSSDUG00000000764) #22	ntn2 (ENSSDUG00000000780) #23	ENSSDUG00000000851 #24	TBC1D24 (ENSSDUG00000000932) #25	ATP6V0C (ENSSDUG00000000954) #26	nubp2 (ENSSDUG00000000978) #27	ENSSDUG00000001009 #28	ENSSDUG00000001038 #29	ENSSDUG00000001052 #30	ablim1b (ENSSDUG00000001109) #31	MPRIP (ENSSDUG00000001143) #32	ENSSDUG00000001215 #33	ENSSDUG00000001243 #34	crp2 (ENSSDUG00000001278) #35	stub1 (ENSSDUG00000001294) #36	metrn (ENSSDUG00000001304) #37
Yellowtail amberjack	MODERN SPECIES	2878	ENSSLDG00000011463 #7	ENSSLDG00000011475 #8	ENSSLDG00000011498 #9	mybpc2b (ENSSLDG00000011549) #10	ENSSLDG00000011659 #11	LRRC4B (ENSSLDG00000011676) #12	ENSSLDG00000011691 #13	USP31 (ENSSLDG00000011705) #14	cog7 (ENSSLDG00000011729) #15	ENSSLDG00000011774 #16	ENSSLDG00000011784 #16	MSS51 (ENSSLDG00000011799) #18	ENSSLDG00000011819 #17	CAPN15 (ENSSLDG00000011854) #19	ENSSLDG00000011931 #21	nog2 (ENSSLDG00000011955) #22	ntn2 (ENSSLDG00000011975) #23	ENSSLDG00000012002 #24	TBC1D24 (ENSSLDG00000012032) #25	ATP6V0C (ENSSLDG00000012068) #26	nubp2 (ENSSLDG00000012088) #27	ENSSLDG00000012132 #28	ENSSLDG00000012162 #29	ENSSLDG00000012191 #30	ablim1b (ENSSLDG00000012253) #31	MPRIP (ENSSLDG00000012327) #32	ENSSLDG00000012487 #33	PRR35 (ENSSLDG00000012526) #34	crp2 (ENSSLDG00000012559) #35	stub1 (ENSSLDG00000012577) #36	metrn (ENSSLDG00000012588) #37
Barramundi perch	MODERN SPECIES	195	ENSLCAG00010000761	ENSLCAG00010000745 #7	ENSLCAG00010000741 #9	ENSLCAG00010000739 #8	mybpc2b (ENSLCAG00010000705) #10	ENSLCAG00010000655 #11	LRRC4B (ENSLCAG00010000649) #12	ENSLCAG00010000644	ENSLCAG00010000639 #13	USP31 (ENSLCAG00010000614) #14	cog7 (ENSLCAG00010000548) #15	ENSLCAG00010000519 #16	ENSLCAG00010000502 #16	MSS51 (ENSLCAG00010000491) #17	MSS51 (ENSLCAG00010000486) #18	nog2 (ENSLCAG00010000410) #22	ntn2 (ENSLCAG00010000396) #23	ENSLCAG00010000383 #24	TBC1D24 (ENSLCAG00010000372) #25	ATP6V0C (ENSLCAG00010000340) #26	nubp2 (ENSLCAG00010000302) #27	ENSLCAG00010000282 #28	ENSLCAG00010000268 #29	ENSLCAG00010000239 #30	ablim1b (ENSLCAG00010026799) #31	MPRIP (ENSLCAG00010026790) #32	ENSLCAG00010026773	ENSLCAG00010026769 #34	crp2 (ENSLCAG00010026767) #35	stub1 (ENSLCAG00010026765) #36	metrn (ENSLCAG00010026764) #37
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Turbot	MODERN SPECIES	9	ENSSMAG00000035681 #7	ENSSMAG00000015118 #8	ENSSMAG00000015097 #9	ENSSMAG00000014766 #10	ENSSMAG00000014708 #11	ENSSMAG00000014678 #12	ENSSMAG00000014663 #13	ENSSMAG00000014625 #14	ENSSMAG00000014575 #15	ENSSMAG00000029485 #16	ENSSMAG00000014549 #17	ENSSMAG00000014526 #18	ENSSMAG00000014472 #19	ENSSMAG00000014414 #21	ENSSMAG00000031672	nog2 (ENSSMAG00000014390) #22	ENSSMAG00000014384	ENSSMAG00000014370	ntn2 (ENSSMAG00000014362) #23	ENSSMAG00000014337 #24	ENSSMAG00000014320 #25	ATP6V0C (ENSSMAG00000014308) #26	nubp2 (ENSSMAG00000014291) #27	ENSSMAG00000014256 #28	ENSSMAG00000014224 #29	ENSSMAG00000014201 #30	ENSSMAG00000014171 #31	ENSSMAG00000013881 #34	ENSSMAG00000035710 #35	ENSSMAG00000013859	ENSSMAG00000013837 #36
Tongue sole	MODERN SPECIES	18	ENSCSEG00000019318	ENSCSEG00000019315	ENSCSEG00000019310	ENSCSEG00000019307	ENSCSEG00000019303 #7	ENSCSEG00000019291 #9	cog7 (ENSCSEG00000019266) #15	USP31 (ENSCSEG00000019256) #14	LRRC4B (ENSCSEG00000019254) #12	ENSCSEG00000019250 #11	mybpc2b (ENSCSEG00000019242) #10	ENSCSEG00000019232	ENSCSEG00000019230 #17	MSS51 (ENSCSEG00000018930) #18	CAPN15 (ENSCSEG00000018917) #19	nog2 (ENSCSEG00000018913) #22	TBC1D24 (ENSCSEG00000018904) #25	ATP6V0C (ENSCSEG00000018902) #26	nubp2 (ENSCSEG00000018886) #27	ENSCSEG00000018877 #34	ENSCSEG00000018867	ENSCSEG00000018856	ftsj1 (ENSCSEG00000018843)	ENSCSEG00000018839	ENSCSEG00000018796	aldoaa (ENSCSEG00000018782)	ENSCSEG00000018666	zgc:112038 (ENSCSEG00000018654)	ENSCSEG00000018643	ENSCSEG00000018639	ENSCSEG00000017808
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000015528
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015014925 #7	CU896602.1 (ENSNFUG00015014933) #8	MYBPC2B (ENSNFUG00015015418) #10	ENSNFUG00015020555 #11	LRRC4BB (ENSNFUG00015020564) #12	ENSNFUG00015020566	HS3ST2 (ENSNFUG00015020570)	USP31 (ENSNFUG00015020572) #14	COG7 (ENSNFUG00015020600) #15	ENSNFUG00015020756	MSS51 (ENSNFUG00015020759) #17	MSS51 (ENSNFUG00015020764) #18	SOLH (ENSNFUG00015020769) #19	CABZ01117977.1 (ENSNFUG00015020828) #21	ENSNFUG00015020846	NOG2 (ENSNFUG00015020847) #22	ntn2 (ENSNFUG00015020850) #23	ENSNFUG00015020855 #24	Nfu_g_1_022957 (ENSNFUG00015020862) #25	NUBP2 (ENSNFUG00015020865) #27	CU929145.4 (ENSNFUG00015020868) #28	CABZ01072828.1 (ENSNFUG00015020869) #29	ENSNFUG00015020873	UBE2I2 (ENSNFUG00015020875)	kctd5a (ENSNFUG00015020878)	pdpk1b (ENSNFUG00015020901)	tsr3 (ENSNFUG00015021441)	GNPTG (ENSNFUG00015021446)	ENSNFUG00015021462	ENSNFUG00015021463	ENSNFUG00015021464
Mangrove rivulus	MODERN SPECIES	43	ENSKMAG00000014603	ENSKMAG00000014549 #7	ENSKMAG00000014533 #8	mybpc2b (ENSKMAG00000014296) #10	ENSKMAG00000014209 #11	LRRC4B (ENSKMAG00000014177) #12	ENSKMAG00000014153	ENSKMAG00000014138 #13	USP31 (ENSKMAG00000014093) #14	cog7 (ENSKMAG00000014031) #15	ENSKMAG00000014004 #16	MSS51 (ENSKMAG00000013985) #17	MSS51 (ENSKMAG00000013961) #18	ENSKMAG00000013932 #21	CAPN15 (ENSKMAG00000013861) #19	nog2 (ENSKMAG00000013828) #22	ntn2 (ENSKMAG00000013813) #23	ENSKMAG00000013779 #24	TBC1D24 (ENSKMAG00000013755) #25	ATP6V0C (ENSKMAG00000013738) #26	nubp2 (ENSKMAG00000013705) #27	ENSKMAG00000013678 #28	ENSKMAG00000013655 #29	ENSKMAG00000013619 #30	ENSKMAG00000013592 #31	MPRIP (ENSKMAG00000013360) #32	ENSKMAG00000013265 #33	ENSKMAG00000013252	ENSKMAG00000013232 #34	crp2 (ENSKMAG00000013219) #35	stub1 (ENSKMAG00000013186) #36
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Guppy	MODERN SPECIES	449	ENSPREG00000019581	ENSPREG00000019558	PIGT (ENSPREG00000019528)	phactr3a (ENSPREG00000019481)	ENSPREG00000019379	ENSPREG00000019354 #11	LRRC4B (ENSPREG00000019331) #12	ENSPREG00000019296 #13	USP31 (ENSPREG00000019269) #14	cog7 (ENSPREG00000019233) #15	ENSPREG00000019223 #16	ENSPREG00000019214 #16	ENSPREG00000019204 #17	MSS51 (ENSPREG00000019194) #18	CAPN15 (ENSPREG00000019164) #19	nog2 (ENSPREG00000019142) #22	ntn2 (ENSPREG00000019132) #23	ENSPREG00000018954 #24	TBC1D24 (ENSPREG00000018921) #25	ATP6V0C (ENSPREG00000018910) #26	nubp2 (ENSPREG00000018897) #27	ENSPREG00000018838 #28	ENSPREG00000018817 #29	ENSPREG00000018795 #30	ENSPREG00000018778 #31	ENSPREG00000018744 #32	PRR35 (ENSPREG00000018723) #34	crp2 (ENSPREG00000018713) #35	stub1 (ENSPREG00000018698) #36	ENSPREG00000018685	metrn (ENSPREG00000018650) #37
NAME_6	ANCESTRAL SPECIES	118	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25
Sailfin molly	MODERN SPECIES	746															ENSPLAG00000010928 #21	nog2 (ENSPLAG00000010943) #22	ntn2 (ENSPLAG00000011251) #23	ENSPLAG00000011268 #24	TBC1D24 (ENSPLAG00000011294) #25
Amazon molly	MODERN SPECIES	531	mybpc2b (ENSPFOG00000017525) #10	ENSPFOG00000017447 #11	LRRC4B (ENSPFOG00000017440) #12	ENSPFOG00000017439	ENSPFOG00000017435 #13	USP31 (ENSPFOG00000017384) #14	ENSPFOG00000020789 #16	ENSPFOG00000022049 #16	cog7 (ENSPFOG00000017289) #15	ENSPFOG00000020788 #16	ENSPFOG00000022363 #16	MSS51 (ENSPFOG00000017283) #17	MSS51 (ENSPFOG00000017264) #18	CAPN15 (ENSPFOG00000017205) #19	ENSPFOG00000017141 #21	nog2 (ENSPFOG00000020787) #22	ntn2 (ENSPFOG00000017087) #23	ENSPFOG00000016990 #24
Platyfish	MODERN SPECIES	1	PPFIA3 (ENSXMAG00000001587)	ENSXMAG00000007344	ENSXMAG00000007346 #7	mybpc2b (ENSXMAG00000007350) #10	ENSXMAG00000022346 #11	LRRC4B (ENSXMAG00000023350) #12	ENSXMAG00000010788	ENSXMAG00000024688 #13	USP31 (ENSXMAG00000019002) #14	cog7 (ENSXMAG00000019008) #15	ENSXMAG00000019435 #16	MSS51 (ENSXMAG00000019041) #17	MSS51 (ENSXMAG00000019043) #18	CAPN15 (ENSXMAG00000019044) #19	ENSXMAG00000008777 #21	nog2 (ENSXMAG00000019533) #22	ntn2 (ENSXMAG00000008784) #23	ENSXMAG00000023095	ENSXMAG00000000130 #24	TBC1D24 (ENSXMAG00000000127) #25	ATP6V0C (ENSXMAG00000009861) #26	nubp2 (ENSXMAG00000009869) #27	ENSXMAG00000009890 #28	ENSXMAG00000020840	ENSXMAG00000009893 #29	ENSXMAG00000000122 #30	ENSXMAG00000000107 #31	ENSXMAG00000029437	MPRIP (ENSXMAG00000000091) #32	PRR35 (ENSXMAG00000000090) #34	crp2 (ENSXMAG00000024415) #35
NAME_4	ANCESTRAL SPECIES	15	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Mummichog	MODERN SPECIES	2201	PPFIA3 (ENSFHEG00000002376)	ENSFHEG00000002332	ENSFHEG00000002301 #7	ENSFHEG00000002297 #8	mybpc2b (ENSFHEG00000002271) #10	ENSFHEG00000002212 #11	LRRC4B (ENSFHEG00000002191) #12	ENSFHEG00000002188	HS3ST2 (ENSFHEG00000002181)	USP31 (ENSFHEG00000002177) #14	cog7 (ENSFHEG00000002164) #15	MSS51 (ENSFHEG00000002149) #17	MSS51 (ENSFHEG00000002138) #18	CAPN15 (ENSFHEG00000002132) #19	ENSFHEG00000000060 #21	nog2 (ENSFHEG00000002118) #22	ntn2 (ENSFHEG00000002114) #23	ENSFHEG00000002100 #24	TBC1D24 (ENSFHEG00000002051) #25	ATP6V0C (ENSFHEG00000002041) #26	nubp2 (ENSFHEG00000002036) #27	ENSFHEG00000002027 #28	ENSFHEG00000002023 #30	ablim1b (ENSFHEG00000002012) #31	ENSFHEG00000001983	MPRIP (ENSFHEG00000001970) #32	ENSFHEG00000001929	PRR35 (ENSFHEG00000001922) #34	crp2 (ENSFHEG00000001920) #35	stub1 (ENSFHEG00000001916) #36	metrn (ENSFHEG00000001910) #37
Sheepshead minnow	MODERN SPECIES	225					mybpc2b (ENSCVAG00000001429) #10	ENSCVAG00000001443 #11	LRRC4B (ENSCVAG00000001449) #12	ENSCVAG00000001454 #13	ENSCVAG00000001457 #14	cog7 (ENSCVAG00000001465) #15	ENSCVAG00000001468 #16	MSS51 (ENSCVAG00000001472) #17	MSS51 (ENSCVAG00000001479) #18	CAPN15 (ENSCVAG00000001490) #19	ENSCVAG00000001497	nog2 (ENSCVAG00000001502) #22	ntn2 (ENSCVAG00000001511) #23	ENSCVAG00000001524 #24	TBC1D24 (ENSCVAG00000001532) #25	ATP6V0C (ENSCVAG00000001537) #26	nubp2 (ENSCVAG00000001546) #27	ENSCVAG00000001550 #28	ENSCVAG00000001554 #29	ENSCVAG00000001563 #30	ablim1b (ENSCVAG00000000059) #31	ENSCVAG00000001574 ##31	MPRIP (ENSCVAG00000000066) #32	ENSCVAG00000001622	ENSCVAG00000001625 #34	crp2 (ENSCVAG00000001629) #35	stub1 (ENSCVAG00000001632) #36
Oryzias	ANCESTRAL SPECIES	11	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Indian medaka	MODERN SPECIES	17	ENSOMEG00000018237	ENSOMEG00000018222	PPFIA3 (ENSOMEG00000018206)	ENSOMEG00000018177 #9	mybpc2b (ENSOMEG00000018161) #10	ENSOMEG00000018089 #11	LRRC4B (ENSOMEG00000018057) #12	ENSOMEG00000018040 #13	USP31 (ENSOMEG00000018029) #14	cog7 (ENSOMEG00000017975) #15	ENSOMEG00000017920 #16	MSS51 (ENSOMEG00000000456) #17	ENSOMEG00000017899 #18	CAPN15 (ENSOMEG00000017877) #19	ENSOMEG00000017774 #21	nog2 (ENSOMEG00000017552) #22	ntn2 (ENSOMEG00000017535) #23	ENSOMEG00000017484 #24	TBC1D24 (ENSOMEG00000017447) #25	ENSOMEG00000000433 #28	nubp2 (ENSOMEG00000017373) #27	ENSOMEG00000017346 #29	ENSOMEG00000017305 #30	ABLIM1 (ENSOMEG00000017233) #31	MPRIP (ENSOMEG00000017141) #32	ENSOMEG00000016826 #34	metrn (ENSOMEG00000000423) #37	crp2 (ENSOMEG00000016738) #35	stub1 (ENSOMEG00000016713) #36	IFT140 (ENSOMEG00000016697)	tmem204 (ENSOMEG00000016665)
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000014684	PPFIA3 (ENSOJAG00000014764)	ENSOJAG00000015296	ENSOJAG00000015379 #8	ENSOJAG00000015392 #9	mybpc2b (ENSOJAG00000015570) #10	ENSOJAG00000017336 #11	LRRC4B (ENSOJAG00000017368) #12	ENSOJAG00000017372 #13	USP31 (ENSOJAG00000017381) #14	cog7 (ENSOJAG00000017398) #15	MSS51 (ENSOJAG00000017466) #17	ENSOJAG00000017470 #18	CAPN15 (ENSOJAG00000017486) #19	ENSOJAG00000017856 #21	nog2 (ENSOJAG00000017884) #22	ntn2 (ENSOJAG00000017890) #23	ENSOJAG00000017916 #24	TBC1D24 (ENSOJAG00000017948) #25	ATP6V0C (ENSOJAG00000017966) #26	NUBP2 (ENSOJAG00000018016) #27	ENSOJAG00000018094 #28	ENSOJAG00000018108 #29	ENSOJAG00000018137 #30	ablim1b (ENSOJAG00000018215) #31	MPRIP (ENSOJAG00000018315) #32	ENSOJAG00000018544 #34	crp2 (ENSOJAG00000018563) #35	stub1 (ENSOJAG00000018591) #36	metrn (ENSOJAG00000018607) #37	IFT140 (ENSOJAG00000018626)
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000030276	ENSORLG00000006976 #8	ENSORLG00000023038 #9	mybpc2b (ENSORLG00000007015) #10	ENSORLG00000007037 #11	ENSORLG00000029384 #12	ENSORLG00000007051 #13	ENSORLG00000007066 #14	cog7 (ENSORLG00000007096) #15	MSS51 (ENSORLG00000023306) #17	ENSORLG00000007099 #16	ENSORLG00000007112 #18	CAPN15 (ENSORLG00000007128) #19	ENSORLG00000007139 #21	ENSORLG00000029249	nog2 (ENSORLG00000007149) #22	ntn2 (ENSORLG00000007171) #23	ENSORLG00000007176 #24	TBC1D24 (ENSORLG00000007193) #25	ATP6V0C (ENSORLG00000007201) #26	nubp2 (ENSORLG00000007228) #27	ENSORLG00000007244 #28	ENSORLG00000030257 #29	ENSORLG00000007252 #30	ENSORLG00000007293 #31	MPRIP (ENSORLG00000007330) #32	ENSORLG00000007335 #34	crp2 (ENSORLG00000007351) #35	stub1 (ENSORLG00000007370) #36	metrn (ENSORLG00000027097) #37	IFT140 (ENSORLG00000007425)
Chinese medaka	MODERN SPECIES	1099	ENSOSIG00000009683	PPFIA3 (ENSOSIG00000009695)	ENSOSIG00000010010	ENSOSIG00000010018 #8	ENSOSIG00000007147 #9	mybpc2b (ENSOSIG00000007149) #10	ENSOSIG00000007574 #11	LRRC4B (ENSOSIG00000007578) #12	ENSOSIG00000007579 #13	USP31 (ENSOSIG00000007584) #14	cog7 (ENSOSIG00000007590) #15	MSS51 (ENSOSIG00000007594) #17	MSS51 (ENSOSIG00000007596) #18	CAPN15 (ENSOSIG00000007603) #19	ENSOSIG00000007619 #21	nog2 (ENSOSIG00000007632) #22	ntn2 (ENSOSIG00000007636) #23	ENSOSIG00000007641 #24	TBC1D24 (ENSOSIG00000007647) #25	ATP6V0C (ENSOSIG00000007650) #26	nubp2 (ENSOSIG00000007693) #27	ENSOSIG00000007717 #28	ENSOSIG00000007718 #30	ABLIM1 (ENSOSIG00000007729) #31	MPRIP (ENSOSIG00000007794) #32	ENSOSIG00000008037 #34	crp2 (ENSOSIG00000008041) #35	stub1 (ENSOSIG00000008048) #36	metrn (ENSOSIG00000008052) #37	IFT140 (ENSOSIG00000008058)	tmem204 (ENSOSIG00000008065)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000164220.g.a	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678	ENSGT00390000015528
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000009010	ENSAPEG00000008984	ENSAPEG00000008949 #7	ENSAPEG00000008935 #8	ENSAPEG00000008916 #9	mybpc2b (ENSAPEG00000008844) #10	ENSAPEG00000008753 #11	LRRC4B (ENSAPEG00000008706) #12	ENSAPEG00000008692	ENSAPEG00000008684 #13	cog7 (ENSAPEG00000008589) #15	ENSAPEG00000008576 #16	MSS51 (ENSAPEG00000008557) #17	MSS51 (ENSAPEG00000008549) #18	CAPN15 (ENSAPEG00000008463) #19	nog2 (ENSAPEG00000008436) #22	ntn2 (ENSAPEG00000008233) #23	ENSAPEG00000008139 #24	TBC1D24 (ENSAPEG00000008117) #25	ATP6V0C (ENSAPEG00000008089) #26	nubp2 (ENSAPEG00000008059) #27	ENSAPEG00000008043 #28	ENSAPEG00000008013 #30	ablim1b (ENSAPEG00000007990) #31	MPRIP (ENSAPEG00000007906) #32	ENSAPEG00000007856 #33	PRR35 (ENSAPEG00000007846) #34	crp2 (ENSAPEG00000007829) #35	stub1 (ENSAPEG00000007820) #36	metrn (ENSAPEG00000007805) #37	ENSAPEG00000007770
Clown anemonefish	MODERN SPECIES	3327								ENSAOCG00000011267	USP31 (ENSAOCG00000011035) #14	cog7 (ENSAOCG00000000697) #15	ENSAOCG00000010969 #16	MSS51 (ENSAOCG00000010961) #17	MSS51 (ENSAOCG00000010937) #18	CAPN15 (ENSAOCG00000010925) #19	ENSAOCG00000000677	nog2 (ENSAOCG00000010860) #22	ntn2 (ENSAOCG00000010850) #23	ENSAOCG00000010825 #24	TBC1D24 (ENSAOCG00000010740) #25	ATP6V0C (ENSAOCG00000010714) #26	nubp2 (ENSAOCG00000010697) #27	ENSAOCG00000010663 #28	ENSAOCG00000010622 #30	ablim1b (ENSAOCG00000010569) #31	MPRIP (ENSAOCG00000000660) #32	ENSAOCG00000002101	PRR35 (ENSAOCG00000002402) #34	RGS6 (ENSAOCG00000010330)	SIPA1L1 (ENSAOCG00000002118)	GPX2 (ENSAOCG00000010201)	RAB15 (ENSAOCG00000002532)
Spiny chromis	MODERN SPECIES	46	PPFIA3 (ENSAPOG00000019157)	ENSAPOG00000000528	ENSAPOG00000018970 #8	mybpc2b (ENSAPOG00000018952) #10	ENSAPOG00000018857 #11	LRRC4B (ENSAPOG00000018853) #12	ENSAPOG00000018839	ENSAPOG00000018816 #13	USP31 (ENSAPOG00000018799) #14	cog7 (ENSAPOG00000018792) #15	ENSAPOG00000018704 #16	MSS51 (ENSAPOG00000018693) #17	MSS51 (ENSAPOG00000018663) #18	CAPN15 (ENSAPOG00000018650) #19	ENSAPOG00000018574 #21	nog2 (ENSAPOG00000018550) #22	ntn2 (ENSAPOG00000000936) #23	ENSAPOG00000018504 #24	TBC1D24 (ENSAPOG00000018494) #25	ATP6V0C (ENSAPOG00000018472) #26	nubp2 (ENSAPOG00000018445) #27	ENSAPOG00000018403 #28	ENSAPOG00000018359 #29	ENSAPOG00000000501 #30	MPRIP (ENSAPOG00000018301) #32
Bicolor damselfish	MODERN SPECIES	1472															ENSSPAG00000013593 #21	nog2 (ENSSPAG00000013611) #22	ntn2 (ENSSPAG00000013620) #23	ENSSPAG00000013631 #24	TBC1D24 (ENSSPAG00000013703) #25	ATP6V0C (ENSSPAG00000013734) #26	nubp2 (ENSSPAG00000013743) #27
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d #30	ENSGT00940000165198.c #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00990000204060
Haplochromini	ANCESTRAL SPECIES	17	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000179726	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d.a #30	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #37	ENSGT00930000151045.f #36	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000179726	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d.a #30	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #37	ENSGT00930000151045.f #36	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000179726	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d.a #30	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #37	ENSGT00930000151045.f #36	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Eastern happy	MODERN SPECIES	20	becn1 (ENSACLG00000009324)	ENSACLG00000009344	itgb3b (ENSACLG00000009367)	mybpc2b (ENSACLG00000009667) #10	ENSACLG00000009757 #11	LRRC4B (ENSACLG00000009772) #12	ENSACLG00000009773 #13	USP31 (ENSACLG00000009781) #14	cog7 (ENSACLG00000009797) #15	ENSACLG00000009806 #16	MSS51 (ENSACLG00000009817) #17	ENSACLG00000009826 #18	CAPN15 (ENSACLG00000009847) #19	ENSACLG00000010365 #21	ENSACLG00000010395	nog2 (ENSACLG00000010400) #22	ntn2 (ENSACLG00000010413) #23	ENSACLG00000010422 #24	TBC1D24 (ENSACLG00000010489) #25	ATP6V0C (ENSACLG00000010503) #26	nubp2 (ENSACLG00000010518) #27	ENSACLG00000010555 #28	ENSACLG00000010570 #29	ENSACLG00000010627 #30	IFT140 (ENSACLG00000010766)	tmem204 (ENSACLG00000011031)	ENSACLG00000011056	metrn (ENSACLG00000011147) #37	stub1 (ENSACLG00000011159) #36	crp2 (ENSACLG00000011181) #35	ENSACLG00000011190 #34
Zebra mbuna	MODERN SPECIES	1111	PPFIA3 (ENSMZEG00005012226)	ENSMZEG00005012141	ENSMZEG00005012122 #8	mybpc2b (ENSMZEG00005011992) #10	ENSMZEG00005011951 #11	LRRC4B (ENSMZEG00005011944) #12	ENSMZEG00005011939 #13	USP31 (ENSMZEG00005011921) #14	cog7 (ENSMZEG00005011883) #15	ENSMZEG00005011875 #16	MSS51 (ENSMZEG00005011864) #17	ENSMZEG00005011857 #18	CAPN15 (ENSMZEG00005011822) #19	ENSMZEG00005011807	ENSMZEG00005011797 #21	nog2 (ENSMZEG00005011791) #22	ntn2 (ENSMZEG00005011774) #23	ENSMZEG00005011740 #24	TBC1D24 (ENSMZEG00005011724) #25	ATP6V0C (ENSMZEG00005011714) #26	nubp2 (ENSMZEG00005011700) #27	ENSMZEG00005011678 #28	ENSMZEG00005011684 #29	ENSMZEG00005011652 #30	ENSMZEG00005011647	ENSMZEG00005011634	ENSMZEG00005011619	WDR90 (ENSMZEG00005011589)	h1-0 (ENSMZEG00005011567)	rhot2 (ENSMZEG00005011542)	rhbdl1 (ENSMZEG00005011521)
P. nyererei	MODERN SPECIES	518	ENSPNYG00000013656	ENSPNYG00000013628	PPFIA3 (ENSPNYG00000013576)	ENSPNYG00000013458	ENSPNYG00000013434 #8	mybpc2b (ENSPNYG00000013287) #10	ENSPNYG00000013206 #11	LRRC4B (ENSPNYG00000013161) #12	ENSPNYG00000013141 #13	USP31 (ENSPNYG00000013096) #14	cog7 (ENSPNYG00000013050) #15	ENSPNYG00000013031 #16	MSS51 (ENSPNYG00000013015) #17	MSS51 (ENSPNYG00000012997) #18	CAPN15 (ENSPNYG00000012944) #19	nog2 (ENSPNYG00000012917) #22	ntn2 (ENSPNYG00000012852) #23	ENSPNYG00000012782 #24	TBC1D24 (ENSPNYG00000012761) #25	ATP6V0C (ENSPNYG00000012737) #26	nubp2 (ENSPNYG00000012702) #27	ENSPNYG00000012679 #28	ENSPNYG00000012607 #29	ENSPNYG00000012564 #30
Burton s mouthbrooder	MODERN SPECIES	457	PPFIA3 (ENSHBUG00000018291)	ENSHBUG00000000863	ENSHBUG00000018059 #8	mybpc2b (ENSHBUG00000018037) #10	ENSHBUG00000017849 #11	LRRC4B (ENSHBUG00000017836) #12	ENSHBUG00000017827 #13	USP31 (ENSHBUG00000017808) #14	cog7 (ENSHBUG00000017783) #15	ENSHBUG00000017688 #16	MSS51 (ENSHBUG00000017668) #17	MSS51 (ENSHBUG00000017653) #18	CAPN15 (ENSHBUG00000017628) #19	ENSHBUG00000017544 #21	ENSHBUG00000017498	nog2 (ENSHBUG00000017486) #22	ntn2 (ENSHBUG00000017474) #23	ENSHBUG00000017459 #24	TBC1D24 (ENSHBUG00000017438) #25	ATP6V0C (ENSHBUG00000017412) #26	nubp2 (ENSHBUG00000017399) #27	ENSHBUG00000017363 #28	ENSHBUG00000017355 #29	ENSHBUG00000017342 #30	ENSHBUG00000017303 #30	ABLIM1 (ENSHBUG00000017260) #31	ENSHBUG00000017239
Lyretail cichlid	MODERN SPECIES	499	pigp (ENSNBRG00000011687)	ENSNBRG00000011673	ENSNBRG00000011654	ENSNBRG00000011643	mybpc2b (ENSNBRG00000011543) #10	ENSNBRG00000011431 #11	LRRC4B (ENSNBRG00000011379) #12	ENSNBRG00000011361 #13	USP31 (ENSNBRG00000011312) #14	cog7 (ENSNBRG00000011267) #15	ENSNBRG00000011255 #16	MSS51 (ENSNBRG00000011221) #17	ENSNBRG00000011209 #18	CAPN15 (ENSNBRG00000011154) #19	ENSNBRG00000011132	nog2 (ENSNBRG00000011119) #22	ntn2 (ENSNBRG00000011103) #23	ENSNBRG00000011033 #24	TBC1D24 (ENSNBRG00000010990) #25	ATP6V0C (ENSNBRG00000010977) #26	nubp2 (ENSNBRG00000010955) #27	ENSNBRG00000010927 #28	ENSNBRG00000010896 #29
Nile tilapia	MODERN SPECIES	20	PPFIA3 (ENSONIG00000020046)	ENSONIG00000030987	ENSONIG00000020044 #8	ENSONIG00000031861	mybpc2b (ENSONIG00000020041) #10	ENSONIG00000020039 #11	LRRC4B (ENSONIG00000020038) #12	ENSONIG00000040988 #13	USP31 (ENSONIG00000020034) #14	cog7 (ENSONIG00000020033) #15	ENSONIG00000033430	MSS51 (ENSONIG00000020032) #17	MSS51 (ENSONIG00000020031) #18	CAPN15 (ENSONIG00000020030) #19	ENSONIG00000020029 #21	nog2 (ENSONIG00000021210) #22	ntn2 (ENSONIG00000020028) #23	ENSONIG00000020027 #24	TBC1D24 (ENSONIG00000020026) #25	ATP6V0C (ENSONIG00000020025) #26	nubp2 (ENSONIG00000020024) #27	ENSONIG00000020023 #28	ENSONIG00000020022 #29	ENSONIG00000020021 #30	ABLIM1 (ENSONIG00000020020) #31	MPRIP (ENSONIG00000020019) #32	ENSONIG00000029887 #34	crp2 (ENSONIG00000038131) #35	stub1 (ENSONIG00000042182) #36	metrn (ENSONIG00000020015) #37	RAB11FIP3 (ENSONIG00000020009)
Midas cichlid	MODERN SPECIES	194						mybpc2b (ENSACIG00000007807) #10	ENSACIG00000007755 #11	LRRC4B (ENSACIG00000007734) #12	ENSACIG00000007721 #13	USP31 (ENSACIG00000007685) #14	cog7 (ENSACIG00000007639) #15	ENSACIG00000007632 #16	MSS51 (ENSACIG00000007618) #17	MSS51 (ENSACIG00000007594) #18	CAPN15 (ENSACIG00000007568) #19	nog2 (ENSACIG00000007558) #22	ntn2 (ENSACIG00000007431) #23	ENSACIG00000007364 #24	TBC1D24 (ENSACIG00000007348) #25	ATP6V0C (ENSACIG00000007338) #26	nubp2 (ENSACIG00000007318) #27	ENSACIG00000007278 #28	ENSACIG00000007253 #29	ENSACIG00000007227 #30	ablim1b (ENSACIG00000007205) #31	ENSACIG00000007193	ENSACIG00000007148 #32	ENSACIG00000007133 #34	crp2 (ENSACIG00000007113) #35	stub1 (ENSACIG00000007066) #36	metrn (ENSACIG00000007044) #37
Tiger tail seahorse	MODERN SPECIES	330	gfra1b (ENSHCOG00000002885)	ENSHCOG00000002902	rbp4 (ENSHCOG00000002918)	cep55l (ENSHCOG00000002927)	pde6c (ENSHCOG00000002946)	fra10ac1 (ENSHCOG00000002956)	lgi1b (ENSHCOG00000000838)	SLC35G1 (ENSHCOG00000002968)	plce1 (ENSHCOG00000003015)	pcdh15b (ENSHCOG00000003058)	nmt1b (ENSHCOG00000003133)	ENSHCOG00000003167	ENSHCOG00000003186	znf281b (ENSHCOG00000003194)	muc13b (ENSHCOG00000003201)	nog2 (ENSHCOG00000003213) #22	ntn2 (ENSHCOG00000003226) #23	TBC1D24 (ENSHCOG00000003244) #25	ATP6V0C (ENSHCOG00000003262) #26	nubp2 (ENSHCOG00000003287) #27	ENSHCOG00000003333 #29	ENSHCOG00000003319 #28	ENSHCOG00000003340 #30	ENSHCOG00000003354 #31	ENSHCOG00000003382 #32	ENSHCOG00000003411
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	10	ENSMMDG00005006627 #7	ENSMMDG00005006629 #8	ENSMMDG00005006632 #9	mybpc2b (ENSMMDG00005006642) #10	ENSMMDG00005006650 #11	LRRC4B (ENSMMDG00005006840) #12	ENSMMDG00005006842	ENSMMDG00005006844	HS3ST2 (ENSMMDG00005006845)	USP31 (ENSMMDG00005006847) #14	cog7 (ENSMMDG00005006849) #15	ENSMMDG00005006870 #16	MSS51 (ENSMMDG00005006871) #17	ENSMMDG00005006875 #18	CAPN15 (ENSMMDG00005006878) #19	ENSMMDG00005006889 #22	ntn2 (ENSMMDG00005006892) #23	ENSMMDG00005006896 #24	TBC1D24 (ENSMMDG00005006898) #25	ATP6V0C (ENSMMDG00005006900) #26	nubp2 (ENSMMDG00005006934) #27	ENSMMDG00005006938 #28	ENSMMDG00005006942 #29	ENSMMDG00005006944 #30	ablim1b (ENSMMDG00005006947) #31	ENSMMDG00005006950 #31	MPRIP (ENSMMDG00005006959) #32	ENSMMDG00005007648 #34	crp2 (ENSMMDG00005007652) #35	stub1 (ENSMMDG00005007655) #36	metrn (ENSMMDG00005007657) #37
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005011508	zgc:100868 (ENSMMDG00005011385)	fus (ENSMMDG00005011362)	arl6ip1 (ENSMMDG00005011356)	mvp (ENSMMDG00005009599)	TLCD3B (ENSMMDG00005009556)	nlk1 (ENSMMDG00005009545)	ENSMMDG00005009541	cdipt (ENSMMDG00005009537)	ENSMMDG00005006806	ENSMMDG00005006710	JMJD8 (ENSMMDG00005006706)	STUB1 (ENSMMDG00005006703) ##36	CAPN15 (ENSMMDG00005006699) ##19	amdhd2 (ENSMMDG00005006398)	nog2 (ENSMMDG00005006385) #22	ENSMMDG00005006383	ENSMMDG00005006349 ##35	suz12a (ENSMMDG00005006250)	crlf3 (ENSMMDG00005006231)	ENSMMDG00005006229	nde1 (ENSMMDG00005006224)	ENSMMDG00005006209	ENSMMDG00005006201	ENSMMDG00005006197	gsg1l (ENSMMDG00005006196)	ENSMMDG00005006194 ##20	ENSMMDG00005006192	ENSMMDG00005006190	ENSMMDG00005006189	ENSMMDG00005006188