Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Carangaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00990000204060 #36	ENSGT00390000001390.b
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00990000204060 #36	ENSGT00390000001390.b
Turbot	MODERN SPECIES	9	ENSSMAG00000035681 #7	ENSSMAG00000015118 #8	ENSSMAG00000015097 #9	ENSSMAG00000014766 #10	ENSSMAG00000014708 #11	ENSSMAG00000014678 #12	ENSSMAG00000014663 #13	ENSSMAG00000014625 #14	ENSSMAG00000014575 #15	ENSSMAG00000029485 #16	ENSSMAG00000014549 #17	ENSSMAG00000014526 #18	ENSSMAG00000014472 #19	ENSSMAG00000014414 #20	ENSSMAG00000031672 #21	nog2 (ENSSMAG00000014390) #22	ENSSMAG00000014384 #23	ENSSMAG00000014370 #24	ntn2 (ENSSMAG00000014362) #25	ENSSMAG00000014337 #26	ENSSMAG00000014320 #27	ATP6V0C (ENSSMAG00000014308) #28	nubp2 (ENSSMAG00000014291) #29	ENSSMAG00000014256 #30	ENSSMAG00000014224 #31	ENSSMAG00000014201 #32	ENSSMAG00000014171 #33	ENSSMAG00000013881 #34	ENSSMAG00000035710 #35	ENSSMAG00000013859 #36	ENSSMAG00000013837 #37
Tongue sole	MODERN SPECIES	18	ENSCSEG00000019318	ENSCSEG00000019315	ENSCSEG00000019310	ENSCSEG00000019307	ENSCSEG00000019303 #7	ENSCSEG00000019291 #9	cog7 (ENSCSEG00000019266) #15	USP31 (ENSCSEG00000019256) #14	LRRC4B (ENSCSEG00000019254) #12	ENSCSEG00000019250 #11	mybpc2b (ENSCSEG00000019242) #10	ENSCSEG00000019232	ENSCSEG00000019230 #17	MSS51 (ENSCSEG00000018930) #18	CAPN15 (ENSCSEG00000018917) #19	nog2 (ENSCSEG00000018913) #22	TBC1D24 (ENSCSEG00000018904) #27	ATP6V0C (ENSCSEG00000018902) #28	nubp2 (ENSCSEG00000018886) #29	ENSCSEG00000018877 #34	ENSCSEG00000018867	ENSCSEG00000018856	ftsj1 (ENSCSEG00000018843)	ENSCSEG00000018839	ENSCSEG00000018796	aldoaa (ENSCSEG00000018782)	ENSCSEG00000018666	zgc:112038 (ENSCSEG00000018654)	ENSCSEG00000018643	ENSCSEG00000018639	ENSCSEG00000017808
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000013678
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000013678
Greater amberjack	MODERN SPECIES	27	PPFIA3 (ENSSDUG00000023357)	ENSSDUG00000000073	ENSSDUG00000000135 #8	ENSSDUG00000000162 #9	mybpc2b (ENSSDUG00000000197) #10	ENSSDUG00000000332 #11	LRRC4B (ENSSDUG00000000408) #12	ENSSDUG00000000439 #13	USP31 (ENSSDUG00000000463) #14	cog7 (ENSSDUG00000000519) #15	ENSSDUG00000000587 #16	MSS51 (ENSSDUG00000000606) #17	MSS51 (ENSSDUG00000000640) #18	CAPN15 (ENSSDUG00000000678) #19	ENSSDUG00000000750 #20	nog2 (ENSSDUG00000000764) #22	ntn2 (ENSSDUG00000000780) #25	ENSSDUG00000000851 #26	TBC1D24 (ENSSDUG00000000932) #27	ATP6V0C (ENSSDUG00000000954) #28	nubp2 (ENSSDUG00000000978) #29	ENSSDUG00000001009 #30	ENSSDUG00000001038 #31	ENSSDUG00000001052 #32	ablim1b (ENSSDUG00000001109) #33	MPRIP (ENSSDUG00000001143)	ENSSDUG00000001215	ENSSDUG00000001243 #34	crp2 (ENSSDUG00000001278) #35	stub1 (ENSSDUG00000001294) #37	metrn (ENSSDUG00000001304)
Yellowtail amberjack	MODERN SPECIES	2878	ENSSLDG00000011463 #7	ENSSLDG00000011475 #8	ENSSLDG00000011498 #9	mybpc2b (ENSSLDG00000011549) #10	ENSSLDG00000011659 #11	LRRC4B (ENSSLDG00000011676) #12	ENSSLDG00000011691 #13	USP31 (ENSSLDG00000011705) #14	cog7 (ENSSLDG00000011729) #15	ENSSLDG00000011774 #16	ENSSLDG00000011784 #16	MSS51 (ENSSLDG00000011799) #18	ENSSLDG00000011819 #17	CAPN15 (ENSSLDG00000011854) #19	ENSSLDG00000011931 #20	nog2 (ENSSLDG00000011955) #22	ntn2 (ENSSLDG00000011975) #25	ENSSLDG00000012002 #26	TBC1D24 (ENSSLDG00000012032) #27	ATP6V0C (ENSSLDG00000012068) #28	nubp2 (ENSSLDG00000012088) #29	ENSSLDG00000012132 #30	ENSSLDG00000012162 #31	ENSSLDG00000012191 #32	ablim1b (ENSSLDG00000012253) #33	MPRIP (ENSSLDG00000012327)	ENSSLDG00000012487	PRR35 (ENSSLDG00000012526) #34	crp2 (ENSSLDG00000012559) #35	stub1 (ENSSLDG00000012577) #37	metrn (ENSSLDG00000012588)
Barramundi perch	MODERN SPECIES	195	ENSLCAG00010000761	ENSLCAG00010000745 #7	ENSLCAG00010000741 #9	ENSLCAG00010000739 #8	mybpc2b (ENSLCAG00010000705) #10	ENSLCAG00010000655 #11	LRRC4B (ENSLCAG00010000649) #12	ENSLCAG00010000644	ENSLCAG00010000639 #13	USP31 (ENSLCAG00010000614) #14	cog7 (ENSLCAG00010000548) #15	ENSLCAG00010000519 #16	ENSLCAG00010000502 #16	MSS51 (ENSLCAG00010000491) #17	MSS51 (ENSLCAG00010000486) #18	nog2 (ENSLCAG00010000410) #22	ntn2 (ENSLCAG00010000396) #25	ENSLCAG00010000383 #26	TBC1D24 (ENSLCAG00010000372) #27	ATP6V0C (ENSLCAG00010000340) #28	nubp2 (ENSLCAG00010000302) #29	ENSLCAG00010000282 #30	ENSLCAG00010000268 #31	ENSLCAG00010000239 #32	ablim1b (ENSLCAG00010026799) #33	MPRIP (ENSLCAG00010026790)	ENSLCAG00010026773	ENSLCAG00010026769 #34	crp2 (ENSLCAG00010026767) #35	stub1 (ENSLCAG00010026765) #37	metrn (ENSLCAG00010026764)
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000011134	ENSMAMG00000026681 #7	ENSMAMG00000011121 #8	ENSMAMG00000011107 #9	ENSMAMG00000011018 #10	ENSMAMG00000010966 #11	ENSMAMG00000010950 #12	ENSMAMG00000010942	ENSMAMG00000010936 #13	ENSMAMG00000010891 #14	ENSMAMG00000010856 #15	ENSMAMG00000010812 #17	ENSMAMG00000026355 #18	ENSMAMG00000010762 #19	ENSMAMG00000010756	nog2 (ENSMAMG00000010740) #22	ntn2 (ENSMAMG00000010731) #25	ENSMAMG00000010692 #26	ENSMAMG00000010662 #27	ATP6V0C (ENSMAMG00000025214) #28	nubp2 (ENSMAMG00000010637) #29	ENSMAMG00000010617 #30	ENSMAMG00000010583 #31	ENSMAMG00000010548 #32	ENSMAMG00000010525 #33	ENSMAMG00000010355	ENSMAMG00000010337 #34	ENSMAMG00000010328 #35	ENSMAMG00000010308 #37	metrn (ENSMAMG00000010298)	tmem204 (ENSMAMG00000025271)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000013678
Climbing perch	MODERN SPECIES	10	ENSATEG00000017515	ENSATEG00000017494	ENSATEG00000017470 #7	ENSATEG00000017459 #8	ENSATEG00000029745 #9	ENSATEG00000017258 #10	ENSATEG00000017164 #11	ENSATEG00000028786 #12	ENSATEG00000017107 #13	ENSATEG00000017057 #14	ENSATEG00000016997 #15	ENSATEG00000026789 #17	ENSATEG00000030151 #18	ENSATEG00000016822 #19	ENSATEG00000016799 #20	nog2 (ENSATEG00000016782) #22	ntn2 (ENSATEG00000016766) #25	ENSATEG00000016755 #26	ENSATEG00000016732 #27	ATP6V0C (ENSATEG00000016719) #28	nubp2 (ENSATEG00000016699) #29	ENSATEG00000016686 #30	ENSATEG00000016671 #31	ENSATEG00000016644 #32	ENSATEG00000016599 #33	ENSATEG00000016451	ENSATEG00000016425	ENSATEG00000016409 #34	ENSATEG00000027066 #35	ENSATEG00000016370 #37	metrn (ENSATEG00000016359)
Siamese fighting fish	MODERN SPECIES	9	fgf21 (ENSBSLG00000008833)	PPFIA3 (ENSBSLG00000007913)	ENSBSLG00000007380	ENSBSLG00000007365 #7	ENSBSLG00000007361 #8	mybpc2b (ENSBSLG00000007218) #10	ENSBSLG00000006696 #11	LRRC4B (ENSBSLG00000005923) #12	HS3ST2 (ENSBSLG00000005918)	USP31 (ENSBSLG00000005887) #14	cog7 (ENSBSLG00000005525) #15	MSS51 (ENSBSLG00000005455) #17	ENSBSLG00000005423 #18	ENSBSLG00000005415 #19	ENSBSLG00000005142 #20	nog2 (ENSBSLG00000005108) #22	ntn2 (ENSBSLG00000005025) #25	ENSBSLG00000004980 #26	TBC1D24 (ENSBSLG00000020690) #27	ATP6V0C (ENSBSLG00000020689) #28	nubp2 (ENSBSLG00000020683) #29	ENSBSLG00000020675 #30	ENSBSLG00000020673 #32	ABLIM1 (ENSBSLG00000020669) #33	PRR35 (ENSBSLG00000020664) #34	crp2 (ENSBSLG00000020662) #35	stub1 (ENSBSLG00000020657) #37	metrn (ENSBSLG00000020656)	ENSBSLG00000020655	tmem204 (ENSBSLG00000020653)	IFT140 (ENSBSLG00000020602)
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00940000153417.A
Fugu	MODERN SPECIES		ENSTRUG00000013290	ENSTRUG00000013329	PPFIA3 (ENSTRUG00000013342)	ENSTRUG00000027287	ENSTRUG00000028919 #7	ENSTRUG00000024447 #8	mybpc2b (ENSTRUG00000013734) #10	ENSTRUG00000013930 #11	LRRC4B (ENSTRUG00000002618) #12	ENSTRUG00000014088 #13	cog7 (ENSTRUG00000014115) #15	MSS51 (ENSTRUG00000032136) #17	MSS51 (ENSTRUG00000014257) #18	CAPN15 (ENSTRUG00000014283) #19	ENSTRUG00000031750 #20	nog2 (ENSTRUG00000014323) #22	ntn2 (ENSTRUG00000014332) #25	TBC1D24 (ENSTRUG00000014498) #27	ENSTRUG00000025985 #30	ENSTRUG00000023248 #31	ENSTRUG00000014585 #32	ABLIM1 (ENSTRUG00000027510) #33	MPRIP (ENSTRUG00000014685)	ENSTRUG00000025439 #34	crp2 (ENSTRUG00000014803) #35	stub1 (ENSTRUG00000014817) #37	metrn (ENSTRUG00000025221)	tmem204 (ENSTRUG00000028725)	IFT140 (ENSTRUG00000014865)	telo2 (ENSTRUG00000014963)	rab11fip3 (ENSTRUG00000015066)
Tetraodon	MODERN SPECIES	13	tlcd3ba (ENSTNIG00000006532)	ENSTNIG00000001006	ENSTNIG00000006576	PPFIA3 (ENSTNIG00000006577)	mybpc2b (ENSTNIG00000012787) #10	ENSTNIG00000012788 #11	LRRC4B (ENSTNIG00000012789) #12	ENSTNIG00000012790 #13	USP31 (ENSTNIG00000012791) #14	cog7 (ENSTNIG00000012792) #15	MSS51 (ENSTNIG00000012793) #17	MSS51 (ENSTNIG00000012794) #18	ENSTNIG00000001735 #19	ENSTNIG00000012795 #19	ENSTNIG00000012796 #20	nog2 (ENSTNIG00000012797) #22	ntn2 (ENSTNIG00000012798) #25	ENSTNIG00000012799 #26	TBC1D24 (ENSTNIG00000012800) #27	ATP6V0C (ENSTNIG00000012801) #28	nubp2 (ENSTNIG00000012802) #29	ENSTNIG00000012803 #30	ENSTNIG00000012804 #31	ENSTNIG00000012805 #32	ENSTNIG00000001356 #32	ABLIM1 (ENSTNIG00000012806) #33	MPRIP (ENSTNIG00000012807)	PRR35 (ENSTNIG00000012808) #34	crp2 (ENSTNIG00000000855) #35	stub1 (ENSTNIG00000012809) #37	metrn (ENSTNIG00000012810)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Ballan wrasse	MODERN SPECIES	103	ENSLBEG00000013029 #7	ENSLBEG00000013054 #8	ENSLBEG00000013069 #9	mybpc2b (ENSLBEG00000013094) #10	ENSLBEG00000013177 #11	LRRC4B (ENSLBEG00000013211) #12	ENSLBEG00000013243 #13	USP31 (ENSLBEG00000013316) #14	cog7 (ENSLBEG00000013453) #15	ENSLBEG00000013548 #16	MSS51 (ENSLBEG00000013561) #17	MSS51 (ENSLBEG00000013576) #18	CAPN15 (ENSLBEG00000013641) #19	ENSLBEG00000013719	ENSLBEG00000013738 #20	nog2 (ENSLBEG00000013774) #22	ntn2 (ENSLBEG00000013806) #25	ENSLBEG00000013844 #26	TBC1D24 (ENSLBEG00000013880) #27	ATP6V0C (ENSLBEG00000013910) #28	nubp2 (ENSLBEG00000013929) #29	ENSLBEG00000013963 #30	ENSLBEG00000014000 #31	ENSLBEG00000014037 #32	ablim1b (ENSLBEG00000014091) #33	MPRIP (ENSLBEG00000014183)	ENSLBEG00000014299	ENSLBEG00000014324 #34	crp2 (ENSLBEG00000014340) #35	stub1 (ENSLBEG00000014362) #37	metrn (ENSLBEG00000014389)
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Perciformes	ANCESTRAL SPECIES	9	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000171105	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Lumpfish	MODERN SPECIES	10	PPFIA3 (ENSCLMG00005011890)	ENSCLMG00005011887	ENSCLMG00005011885 #7	ENSCLMG00005011884 #8	ENSCLMG00005011883 #9	mybpc2b (ENSCLMG00005011580) #10	ENSCLMG00005011566 #11	LRRC4B (ENSCLMG00005011538) #12	ENSCLMG00005011534 #13	USP31 (ENSCLMG00005011531) #14	cog7 (ENSCLMG00005011481) #15	MSS51 (ENSCLMG00005011476) #17	ENSCLMG00005011475 #18	CAPN15 (ENSCLMG00005011469) #19	ENSCLMG00005011462 #20	nog2 (ENSCLMG00005011461) #22	ntn2 (ENSCLMG00005011460) #25	ENSCLMG00005011457 #26	TBC1D24 (ENSCLMG00005011375) #27	ATP6V0C (ENSCLMG00005011370) #28	nubp2 (ENSCLMG00005011341) #29	ENSCLMG00005011338 #30	ENSCLMG00005011337 #31	ENSCLMG00005011321 #32	ENSCLMG00005011315 #33	MPRIP (ENSCLMG00005011092)	ENSCLMG00005011088	ENSCLMG00005011085	PRR35 (ENSCLMG00005011084) #34	crp2 (ENSCLMG00005011083) #35	stub1 (ENSCLMG00005011082) #37
Stickleback	MODERN SPECIES	5	ENSGACG00000008100	ENSGACG00000008107 #9	mybpc2b (ENSGACG00000008110) #10	ENSGACG00000008187 #11	LRRC4B (ENSGACG00000008204) #12	ENSGACG00000008205	HS3ST2 (ENSGACG00000008211)	ENSGACG00000008213	USP31 (ENSGACG00000008214) #14	cog7 (ENSGACG00000008223) #15	ENSGACG00000008231 #16	MSS51 (ENSGACG00000008232) #18	ENSGACG00000008245	ENSGACG00000008248 #19	ENSGACG00000008256 #20	nog2 (ENSGACG00000008267) #22	ntn2 (ENSGACG00000008270) #25	ENSGACG00000008273 #26	TBC1D24 (ENSGACG00000008278) #27	ATP6V0C (ENSGACG00000008293) #28	nubp2 (ENSGACG00000008320) #29	ENSGACG00000008335 #30	ENSGACG00000008342 #31	ENSGACG00000008345	ENSGACG00000008354 #32	ablim1b (ENSGACG00000008370) #33	MPRIP (ENSGACG00000008379)	ENSGACG00000008397	PRR35 (ENSGACG00000008401) #34	crp2 (ENSGACG00000008405) #35	stub1 (ENSGACG00000008414) #37
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000171105	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000022417	ENSCGOG00000022458	ENSCGOG00000022460 #7	ENSCGOG00000022462 #8	ENSCGOG00000022464 #9	mybpc2b (ENSCGOG00000022522) #10	ENSCGOG00000023638 #11	LRRC4B (ENSCGOG00000023642) #12	HS3ST2 (ENSCGOG00000023645)	cog7 (ENSCGOG00000023661) #15	ENSCGOG00000023755 #16	ENSCGOG00000023757	MSS51 (ENSCGOG00000023759) #18	ENSCGOG00000023766 #20	ENSCGOG00000023771 #21	nog2 (ENSCGOG00000023772) #22	ntn2 (ENSCGOG00000023774) #25	ENSCGOG00000023779 #26	TBC1D24 (ENSCGOG00000023787) #27	ATP6V0C (ENSCGOG00000023789) #28	nubp2 (ENSCGOG00000023793) #29	ENSCGOG00000023798 #30	ENSCGOG00000002375 #31	ENSCGOG00000002387 #32	ablim1b (ENSCGOG00000002421) #33	MPRIP (ENSCGOG00000002508)	ENSCGOG00000002842	PRR35 (ENSCGOG00000002848) #34	metrn (ENSCGOG00000002854)	ENSCGOG00000002857	IFT140 (ENSCGOG00000002896)
Pike perch	MODERN SPECIES	3	ENSSLUG00000007535	ENSSLUG00000007546 #7	ENSSLUG00000007554 #8	ENSSLUG00000007564 #9	mybpc2b (ENSSLUG00000007632) #10	ENSSLUG00000008501 #11	LRRC4B (ENSSLUG00000008516) #12	ENSSLUG00000008519 #13	USP31 (ENSSLUG00000008523) #14	cog7 (ENSSLUG00000008549) #15	MSS51 (ENSSLUG00000008603) #17	MSS51 (ENSSLUG00000008611) #18	CAPN15 (ENSSLUG00000008620) #19	ENSSLUG00000008629	ENSSLUG00000008640 #20	nog2 (ENSSLUG00000008648) #22	ntn2 (ENSSLUG00000008652) #25	ENSSLUG00000008663 #26	TBC1D24 (ENSSLUG00000008676) #27	ATP6V0C (ENSSLUG00000008682) #28	nubp2 (ENSSLUG00000008697) #29	ENSSLUG00000008704 #30	ENSSLUG00000008708 #31	ENSSLUG00000008716 #32
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
European seabass	MODERN SPECIES	11	ENSDLAG00005009944	ENSDLAG00005009857	ENSDLAG00005009847 #7	ENSDLAG00005009831 #8	ENSDLAG00005009828 #9	ENSDLAG00005009509 #10	ENSDLAG00005009401 #11	LRRC4B (ENSDLAG00005027065) #12	ENSDLAG00005009392	HS3ST2 (ENSDLAG00005009389)	ENSDLAG00005009372 #14	COG7 (ENSDLAG00005009341) #15	ENSDLAG00005034965 #17	ENSDLAG00005009199 #19	ENSDLAG00005009161 #20	nog2 (ENSDLAG00005009159) #22	ntn2 (ENSDLAG00005009141) #25	ENSDLAG00005009119 #26	ENSDLAG00005009116 #27	VATL (ENSDLAG00005030834) #28	nubp2 (ENSDLAG00005009011) #29	ENSDLAG00005033812 #30	ENSDLAG00005032822 #31	ENSDLAG00005008970 #32	ENSDLAG00005008922 #33	ENSDLAG00005007478	ENSDLAG00005007415	ENSDLAG00005007396 #34	ENSDLAG00005007389 #35	ENSDLAG00005007372 #37	metrn (ENSDLAG00005027335)
Large yellow croaker	MODERN SPECIES	488	PPFIA3 (ENSLCRG00005007020)	ENSLCRG00005007158	ENSLCRG00005007160 #7	ENSLCRG00005007161 #8	ENSLCRG00005007162 #9	mybpc2b (ENSLCRG00005007183) #10	ENSLCRG00005010195 #11	LRRC4B (ENSLCRG00005010197) #12	ENSLCRG00005010199 #13	USP31 (ENSLCRG00005010204) #14	cog7 (ENSLCRG00005010213) #15	MSS51 (ENSLCRG00005010219) #17	MSS51 (ENSLCRG00005010220) #18	CAPN15 (ENSLCRG00005010225) #19	ENSLCRG00005010420 #20	nog2 (ENSLCRG00005010428) #22	ntn2 (ENSLCRG00005010430) #25	ENSLCRG00005010432 #26	TBC1D24 (ENSLCRG00005010433) #27	ATP6V0C (ENSLCRG00005010434) #28	nubp2 (ENSLCRG00005010439) #29	ENSLCRG00005010521 #30	ENSLCRG00005010524 #31	ENSLCRG00005010525 #32	ablim1b (ENSLCRG00005010527) #33	MPRIP (ENSLCRG00005010537)	ENSLCRG00005011143	PRR35 (ENSLCRG00005011147) #34	crp2 (ENSLCRG00005011150) #35	stub1 (ENSLCRG00005007262) #37	metrn (ENSLCRG00005007265)
Gilthead seabream	MODERN SPECIES	12	PPFIA3 (ENSSAUG00010023520)	ENSSAUG00010023491	ENSSAUG00010023489 #7	ENSSAUG00010023488 #8	ENSSAUG00010023487 #9	mybpc2b (ENSSAUG00010016277) #10	ENSSAUG00010016199 #11	LRRC4B (ENSSAUG00010016196) #12	HS3ST2 (ENSSAUG00010016195)	USP31 (ENSSAUG00010016188) #14	cog7 (ENSSAUG00010016184) #15	MSS51 (ENSSAUG00010016183) #17	MSS51 (ENSSAUG00010016181) #18	CAPN15 (ENSSAUG00010016176) #19	ENSSAUG00010016172 #20	nog2 (ENSSAUG00010016171) #22	ntn2 (ENSSAUG00010016169) #25	ENSSAUG00010016162 #26	TBC1D24 (ENSSAUG00010016158) #27	ATP6V0C (ENSSAUG00010016151) ##28	nubp2 (ENSSAUG00010016136) #29	ENSSAUG00010016130 #30	ENSSAUG00010018228 #31	ENSSAUG00010018226 #32	ablim1b (ENSSAUG00010016992) #33	MPRIP (ENSSAUG00010016963)	ENSSAUG00010016957	PRR35 (ENSSAUG00010016954) #34	crp2 (ENSSAUG00010016953) #35	stub1 (ENSSAUG00010016951) #37	metrn (ENSSAUG00010016950)
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000015528
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015014925 #7	CU896602.1 (ENSNFUG00015014933) #8	MYBPC2B (ENSNFUG00015015418) #10	ENSNFUG00015020555 #11	LRRC4BB (ENSNFUG00015020564) #12	ENSNFUG00015020566	HS3ST2 (ENSNFUG00015020570)	USP31 (ENSNFUG00015020572) #14	COG7 (ENSNFUG00015020600) #15	ENSNFUG00015020756	MSS51 (ENSNFUG00015020759) #17	MSS51 (ENSNFUG00015020764) #18	SOLH (ENSNFUG00015020769) #19	CABZ01117977.1 (ENSNFUG00015020828) #20	ENSNFUG00015020846	NOG2 (ENSNFUG00015020847) #22	ntn2 (ENSNFUG00015020850) #25	ENSNFUG00015020855 #26	Nfu_g_1_022957 (ENSNFUG00015020862) #27	NUBP2 (ENSNFUG00015020865) #29	CU929145.4 (ENSNFUG00015020868) #30	CABZ01072828.1 (ENSNFUG00015020869) #31	ENSNFUG00015020873	UBE2I2 (ENSNFUG00015020875)	kctd5a (ENSNFUG00015020878)	pdpk1b (ENSNFUG00015020901)	tsr3 (ENSNFUG00015021441)	GNPTG (ENSNFUG00015021446)	ENSNFUG00015021462	ENSNFUG00015021463	ENSNFUG00015021464
Mangrove rivulus	MODERN SPECIES	43	ENSKMAG00000014603	ENSKMAG00000014549 #7	ENSKMAG00000014533 #8	mybpc2b (ENSKMAG00000014296) #10	ENSKMAG00000014209 #11	LRRC4B (ENSKMAG00000014177) #12	ENSKMAG00000014153	ENSKMAG00000014138 #13	USP31 (ENSKMAG00000014093) #14	cog7 (ENSKMAG00000014031) #15	ENSKMAG00000014004 #16	MSS51 (ENSKMAG00000013985) #17	MSS51 (ENSKMAG00000013961) #18	ENSKMAG00000013932 #20	CAPN15 (ENSKMAG00000013861) #19	nog2 (ENSKMAG00000013828) #22	ntn2 (ENSKMAG00000013813) #25	ENSKMAG00000013779 #26	TBC1D24 (ENSKMAG00000013755) #27	ATP6V0C (ENSKMAG00000013738) #28	nubp2 (ENSKMAG00000013705) #29	ENSKMAG00000013678 #30	ENSKMAG00000013655 #31	ENSKMAG00000013619 #32	ENSKMAG00000013592 #33	MPRIP (ENSKMAG00000013360)	ENSKMAG00000013265	ENSKMAG00000013252	ENSKMAG00000013232 #34	crp2 (ENSKMAG00000013219) #35	stub1 (ENSKMAG00000013186) #37
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00990000204060 #36	ENSGT00390000001390.b
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00990000204060 #36	ENSGT00390000001390.b
Guppy	MODERN SPECIES	449	ENSPREG00000019581	ENSPREG00000019558	PIGT (ENSPREG00000019528)	phactr3a (ENSPREG00000019481)	ENSPREG00000019379	ENSPREG00000019354 #11	LRRC4B (ENSPREG00000019331) #12	ENSPREG00000019296 #13	USP31 (ENSPREG00000019269) #14	cog7 (ENSPREG00000019233) #15	ENSPREG00000019223 #16	ENSPREG00000019214 #16	ENSPREG00000019204 #17	MSS51 (ENSPREG00000019194) #18	CAPN15 (ENSPREG00000019164) #19	nog2 (ENSPREG00000019142) #22	ntn2 (ENSPREG00000019132) #25	ENSPREG00000018954 #26	TBC1D24 (ENSPREG00000018921) #27	ATP6V0C (ENSPREG00000018910) #28	nubp2 (ENSPREG00000018897) #29	ENSPREG00000018838 #30	ENSPREG00000018817 #31	ENSPREG00000018795 #32	ENSPREG00000018778 #33	ENSPREG00000018744	PRR35 (ENSPREG00000018723) #34	crp2 (ENSPREG00000018713) #35	stub1 (ENSPREG00000018698) #37	ENSPREG00000018685 #36	metrn (ENSPREG00000018650)
NAME_6	ANCESTRAL SPECIES	118	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27
Sailfin molly	MODERN SPECIES	746															ENSPLAG00000010928 #20	nog2 (ENSPLAG00000010943) #22	ntn2 (ENSPLAG00000011251) #25	ENSPLAG00000011268 #26	TBC1D24 (ENSPLAG00000011294) #27
Amazon molly	MODERN SPECIES	531	mybpc2b (ENSPFOG00000017525) #10	ENSPFOG00000017447 #11	LRRC4B (ENSPFOG00000017440) #12	ENSPFOG00000017439	ENSPFOG00000017435 #13	USP31 (ENSPFOG00000017384) #14	ENSPFOG00000020789 #16	ENSPFOG00000022049 #16	cog7 (ENSPFOG00000017289) #15	ENSPFOG00000020788 #16	ENSPFOG00000022363 #16	MSS51 (ENSPFOG00000017283) #17	MSS51 (ENSPFOG00000017264) #18	CAPN15 (ENSPFOG00000017205) #19	ENSPFOG00000017141 #20	nog2 (ENSPFOG00000020787) #22	ntn2 (ENSPFOG00000017087) #25	ENSPFOG00000016990 #26
Platyfish	MODERN SPECIES	1	PPFIA3 (ENSXMAG00000001587)	ENSXMAG00000007344	ENSXMAG00000007346 #7	mybpc2b (ENSXMAG00000007350) #10	ENSXMAG00000022346 #11	LRRC4B (ENSXMAG00000023350) #12	ENSXMAG00000010788	ENSXMAG00000024688 #13	USP31 (ENSXMAG00000019002) #14	cog7 (ENSXMAG00000019008) #15	ENSXMAG00000019435 #16	MSS51 (ENSXMAG00000019041) #17	MSS51 (ENSXMAG00000019043) #18	CAPN15 (ENSXMAG00000019044) #19	ENSXMAG00000008777 #20	nog2 (ENSXMAG00000019533) #22	ntn2 (ENSXMAG00000008784) #25	ENSXMAG00000023095	ENSXMAG00000000130 #26	TBC1D24 (ENSXMAG00000000127) #27	ATP6V0C (ENSXMAG00000009861) #28	nubp2 (ENSXMAG00000009869) #29	ENSXMAG00000009890 #30	ENSXMAG00000020840	ENSXMAG00000009893 #31	ENSXMAG00000000122 #32	ENSXMAG00000000107 #33	ENSXMAG00000029437	MPRIP (ENSXMAG00000000091)	PRR35 (ENSXMAG00000000090) #34	crp2 (ENSXMAG00000024415) #35
NAME_4	ANCESTRAL SPECIES	15	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37
Mummichog	MODERN SPECIES	2201	PPFIA3 (ENSFHEG00000002376)	ENSFHEG00000002332	ENSFHEG00000002301 #7	ENSFHEG00000002297 #8	mybpc2b (ENSFHEG00000002271) #10	ENSFHEG00000002212 #11	LRRC4B (ENSFHEG00000002191) #12	ENSFHEG00000002188	HS3ST2 (ENSFHEG00000002181)	USP31 (ENSFHEG00000002177) #14	cog7 (ENSFHEG00000002164) #15	MSS51 (ENSFHEG00000002149) #17	MSS51 (ENSFHEG00000002138) #18	CAPN15 (ENSFHEG00000002132) #19	ENSFHEG00000000060 #20	nog2 (ENSFHEG00000002118) #22	ntn2 (ENSFHEG00000002114) #25	ENSFHEG00000002100 #26	TBC1D24 (ENSFHEG00000002051) #27	ATP6V0C (ENSFHEG00000002041) #28	nubp2 (ENSFHEG00000002036) #29	ENSFHEG00000002027 #30	ENSFHEG00000002023 #32	ablim1b (ENSFHEG00000002012) #33	ENSFHEG00000001983	MPRIP (ENSFHEG00000001970)	ENSFHEG00000001929	PRR35 (ENSFHEG00000001922) #34	crp2 (ENSFHEG00000001920) #35	stub1 (ENSFHEG00000001916) #37	metrn (ENSFHEG00000001910)
Sheepshead minnow	MODERN SPECIES	225					mybpc2b (ENSCVAG00000001429) #10	ENSCVAG00000001443 #11	LRRC4B (ENSCVAG00000001449) #12	ENSCVAG00000001454 #13	ENSCVAG00000001457 #14	cog7 (ENSCVAG00000001465) #15	ENSCVAG00000001468 #16	MSS51 (ENSCVAG00000001472) #17	MSS51 (ENSCVAG00000001479) #18	CAPN15 (ENSCVAG00000001490) #19	ENSCVAG00000001497 #21	nog2 (ENSCVAG00000001502) #22	ntn2 (ENSCVAG00000001511) #25	ENSCVAG00000001524 #26	TBC1D24 (ENSCVAG00000001532) #27	ATP6V0C (ENSCVAG00000001537) #28	nubp2 (ENSCVAG00000001546) #29	ENSCVAG00000001550 #30	ENSCVAG00000001554 #31	ENSCVAG00000001563 #32	ablim1b (ENSCVAG00000000059) #33	ENSCVAG00000001574 ##33	MPRIP (ENSCVAG00000000066)	ENSCVAG00000001622	ENSCVAG00000001625 #34	crp2 (ENSCVAG00000001629) #35	stub1 (ENSCVAG00000001632) #37
Oryzias	ANCESTRAL SPECIES	11	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00940000153417.A
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00940000153417.A
Indian medaka	MODERN SPECIES	17	ENSOMEG00000018237	ENSOMEG00000018222	PPFIA3 (ENSOMEG00000018206)	ENSOMEG00000018177 #9	mybpc2b (ENSOMEG00000018161) #10	ENSOMEG00000018089 #11	LRRC4B (ENSOMEG00000018057) #12	ENSOMEG00000018040 #13	USP31 (ENSOMEG00000018029) #14	cog7 (ENSOMEG00000017975) #15	ENSOMEG00000017920 #16	MSS51 (ENSOMEG00000000456) #17	ENSOMEG00000017899 #18	CAPN15 (ENSOMEG00000017877) #19	ENSOMEG00000017774 #20	nog2 (ENSOMEG00000017552) #22	ntn2 (ENSOMEG00000017535) #25	ENSOMEG00000017484 #26	TBC1D24 (ENSOMEG00000017447) #27	ENSOMEG00000000433 #30	nubp2 (ENSOMEG00000017373) #29	ENSOMEG00000017346 #31	ENSOMEG00000017305 #32	ABLIM1 (ENSOMEG00000017233) #33	MPRIP (ENSOMEG00000017141)	ENSOMEG00000016826 #34	metrn (ENSOMEG00000000423)	crp2 (ENSOMEG00000016738) #35	stub1 (ENSOMEG00000016713) #37	IFT140 (ENSOMEG00000016697)	tmem204 (ENSOMEG00000016665)
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000014684	PPFIA3 (ENSOJAG00000014764)	ENSOJAG00000015296	ENSOJAG00000015379 #8	ENSOJAG00000015392 #9	mybpc2b (ENSOJAG00000015570) #10	ENSOJAG00000017336 #11	LRRC4B (ENSOJAG00000017368) #12	ENSOJAG00000017372 #13	USP31 (ENSOJAG00000017381) #14	cog7 (ENSOJAG00000017398) #15	MSS51 (ENSOJAG00000017466) #17	ENSOJAG00000017470 #18	CAPN15 (ENSOJAG00000017486) #19	ENSOJAG00000017856 #20	nog2 (ENSOJAG00000017884) #22	ntn2 (ENSOJAG00000017890) #25	ENSOJAG00000017916 #26	TBC1D24 (ENSOJAG00000017948) #27	ATP6V0C (ENSOJAG00000017966) #28	NUBP2 (ENSOJAG00000018016) #29	ENSOJAG00000018094 #30	ENSOJAG00000018108 #31	ENSOJAG00000018137 #32	ablim1b (ENSOJAG00000018215) #33	MPRIP (ENSOJAG00000018315)	ENSOJAG00000018544 #34	crp2 (ENSOJAG00000018563) #35	stub1 (ENSOJAG00000018591) #37	metrn (ENSOJAG00000018607)	IFT140 (ENSOJAG00000018626)
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00940000153417.A
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000030276	ENSORLG00000006976 #8	ENSORLG00000023038 #9	mybpc2b (ENSORLG00000007015) #10	ENSORLG00000007037 #11	ENSORLG00000029384 #12	ENSORLG00000007051 #13	ENSORLG00000007066 #14	cog7 (ENSORLG00000007096) #15	MSS51 (ENSORLG00000023306) #17	ENSORLG00000007099 #16	ENSORLG00000007112 #18	CAPN15 (ENSORLG00000007128) #19	ENSORLG00000007139 #20	ENSORLG00000029249	nog2 (ENSORLG00000007149) #22	ntn2 (ENSORLG00000007171) #25	ENSORLG00000007176 #26	TBC1D24 (ENSORLG00000007193) #27	ATP6V0C (ENSORLG00000007201) #28	nubp2 (ENSORLG00000007228) #29	ENSORLG00000007244 #30	ENSORLG00000030257 #31	ENSORLG00000007252 #32	ENSORLG00000007293 #33	MPRIP (ENSORLG00000007330)	ENSORLG00000007335 #34	crp2 (ENSORLG00000007351) #35	stub1 (ENSORLG00000007370) #37	metrn (ENSORLG00000027097)	IFT140 (ENSORLG00000007425)
Chinese medaka	MODERN SPECIES	1099	ENSOSIG00000009683	PPFIA3 (ENSOSIG00000009695)	ENSOSIG00000010010	ENSOSIG00000010018 #8	ENSOSIG00000007147 #9	mybpc2b (ENSOSIG00000007149) #10	ENSOSIG00000007574 #11	LRRC4B (ENSOSIG00000007578) #12	ENSOSIG00000007579 #13	USP31 (ENSOSIG00000007584) #14	cog7 (ENSOSIG00000007590) #15	MSS51 (ENSOSIG00000007594) #17	MSS51 (ENSOSIG00000007596) #18	CAPN15 (ENSOSIG00000007603) #19	ENSOSIG00000007619 #20	nog2 (ENSOSIG00000007632) #22	ntn2 (ENSOSIG00000007636) #25	ENSOSIG00000007641 #26	TBC1D24 (ENSOSIG00000007647) #27	ATP6V0C (ENSOSIG00000007650) #28	nubp2 (ENSOSIG00000007693) #29	ENSOSIG00000007717 #30	ENSOSIG00000007718 #32	ABLIM1 (ENSOSIG00000007729) #33	MPRIP (ENSOSIG00000007794)	ENSOSIG00000008037 #34	crp2 (ENSOSIG00000008041) #35	stub1 (ENSOSIG00000008048) #37	metrn (ENSOSIG00000008052)	IFT140 (ENSOSIG00000008058)	tmem204 (ENSOSIG00000008065)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000013678
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT01090000260249	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000013678
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00940000161121	ENSGT00930000151196.a.b #7	ENSGT00930000151196.a.a.c #8	ENSGT00930000151196.a.a.d #9	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000164220.g.a	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b	ENSGT00390000013678	ENSGT00390000015528
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000009010	ENSAPEG00000008984	ENSAPEG00000008949 #7	ENSAPEG00000008935 #8	ENSAPEG00000008916 #9	mybpc2b (ENSAPEG00000008844) #10	ENSAPEG00000008753 #11	LRRC4B (ENSAPEG00000008706) #12	ENSAPEG00000008692	ENSAPEG00000008684 #13	cog7 (ENSAPEG00000008589) #15	ENSAPEG00000008576 #16	MSS51 (ENSAPEG00000008557) #17	MSS51 (ENSAPEG00000008549) #18	CAPN15 (ENSAPEG00000008463) #19	nog2 (ENSAPEG00000008436) #22	ntn2 (ENSAPEG00000008233) #25	ENSAPEG00000008139 #26	TBC1D24 (ENSAPEG00000008117) #27	ATP6V0C (ENSAPEG00000008089) #28	nubp2 (ENSAPEG00000008059) #29	ENSAPEG00000008043 #30	ENSAPEG00000008013 #32	ablim1b (ENSAPEG00000007990) #33	MPRIP (ENSAPEG00000007906)	ENSAPEG00000007856	PRR35 (ENSAPEG00000007846) #34	crp2 (ENSAPEG00000007829) #35	stub1 (ENSAPEG00000007820) #37	metrn (ENSAPEG00000007805)	ENSAPEG00000007770
Clown anemonefish	MODERN SPECIES	3327								ENSAOCG00000011267	USP31 (ENSAOCG00000011035) #14	cog7 (ENSAOCG00000000697) #15	ENSAOCG00000010969 #16	MSS51 (ENSAOCG00000010961) #17	MSS51 (ENSAOCG00000010937) #18	CAPN15 (ENSAOCG00000010925) #19	ENSAOCG00000000677 #21	nog2 (ENSAOCG00000010860) #22	ntn2 (ENSAOCG00000010850) #25	ENSAOCG00000010825 #26	TBC1D24 (ENSAOCG00000010740) #27	ATP6V0C (ENSAOCG00000010714) #28	nubp2 (ENSAOCG00000010697) #29	ENSAOCG00000010663 #30	ENSAOCG00000010622 #32	ablim1b (ENSAOCG00000010569) #33	MPRIP (ENSAOCG00000000660)	ENSAOCG00000002101	PRR35 (ENSAOCG00000002402) #34	RGS6 (ENSAOCG00000010330)	SIPA1L1 (ENSAOCG00000002118)	GPX2 (ENSAOCG00000010201)	RAB15 (ENSAOCG00000002532)
Spiny chromis	MODERN SPECIES	46	PPFIA3 (ENSAPOG00000019157)	ENSAPOG00000000528	ENSAPOG00000018970 #8	mybpc2b (ENSAPOG00000018952) #10	ENSAPOG00000018857 #11	LRRC4B (ENSAPOG00000018853) #12	ENSAPOG00000018839	ENSAPOG00000018816 #13	USP31 (ENSAPOG00000018799) #14	cog7 (ENSAPOG00000018792) #15	ENSAPOG00000018704 #16	MSS51 (ENSAPOG00000018693) #17	MSS51 (ENSAPOG00000018663) #18	CAPN15 (ENSAPOG00000018650) #19	ENSAPOG00000018574 #20	nog2 (ENSAPOG00000018550) #22	ntn2 (ENSAPOG00000000936) #25	ENSAPOG00000018504 #26	TBC1D24 (ENSAPOG00000018494) #27	ATP6V0C (ENSAPOG00000018472) #28	nubp2 (ENSAPOG00000018445) #29	ENSAPOG00000018403 #30	ENSAPOG00000018359 #31	ENSAPOG00000000501 #32	MPRIP (ENSAPOG00000018301)
Bicolor damselfish	MODERN SPECIES	1472															ENSSPAG00000013593 #20	nog2 (ENSSPAG00000013611) #22	ntn2 (ENSSPAG00000013620) #25	ENSSPAG00000013631 #26	TBC1D24 (ENSSPAG00000013703) #27	ATP6V0C (ENSSPAG00000013734) #28	nubp2 (ENSSPAG00000013743) #29
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198 #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #37	ENSGT00390000001390.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198.d #32	ENSGT00940000165198.c #32	ENSGT00950000182850.a.a.a #33	ENSGT01090000260189	ENSGT00940000155286.m.a	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00990000204060 #36
Haplochromini	ANCESTRAL SPECIES	17	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000179726	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198.d.a #32	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b	ENSGT00930000151045.f #37	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000179726	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198.d.a #32	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b	ENSGT00930000151045.f #37	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #8	ENSGT00940000160092.A #10	ENSGT00940000161433 #11	ENSGT00940000160261.h #12	ENSGT00940000154768.B #13	ENSGT00940000156355.n.b #14	ENSGT00390000001260 #15	ENSGT00950000182933.B.a.a #16	ENSGT00940000153820.b.b.b #17	ENSGT00940000153820.b.b.a #18	ENSGT00940000158312.e #19	ENSGT00940000179726	ENSGT00940000163984.B #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #25	ENSGT00940000153470.a.b.a #26	ENSGT00410000025739.c.a #27	ENSGT00550000074873.ob.a.b.b #28	ENSGT00950000183193.A.c.b #29	ENSGT01030000234629.E.a.a #30	ENSGT00530000063937.b #31	ENSGT00940000165198.d.a #32	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b	ENSGT00930000151045.f #37	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Eastern happy	MODERN SPECIES	20	becn1 (ENSACLG00000009324)	ENSACLG00000009344	itgb3b (ENSACLG00000009367)	mybpc2b (ENSACLG00000009667) #10	ENSACLG00000009757 #11	LRRC4B (ENSACLG00000009772) #12	ENSACLG00000009773 #13	USP31 (ENSACLG00000009781) #14	cog7 (ENSACLG00000009797) #15	ENSACLG00000009806 #16	MSS51 (ENSACLG00000009817) #17	ENSACLG00000009826 #18	CAPN15 (ENSACLG00000009847) #19	ENSACLG00000010365 #20	ENSACLG00000010395	nog2 (ENSACLG00000010400) #22	ntn2 (ENSACLG00000010413) #25	ENSACLG00000010422 #26	TBC1D24 (ENSACLG00000010489) #27	ATP6V0C (ENSACLG00000010503) #28	nubp2 (ENSACLG00000010518) #29	ENSACLG00000010555 #30	ENSACLG00000010570 #31	ENSACLG00000010627 #32	IFT140 (ENSACLG00000010766)	tmem204 (ENSACLG00000011031)	ENSACLG00000011056	metrn (ENSACLG00000011147)	stub1 (ENSACLG00000011159) #37	crp2 (ENSACLG00000011181) #35	ENSACLG00000011190 #34
Zebra mbuna	MODERN SPECIES	1111	PPFIA3 (ENSMZEG00005012226)	ENSMZEG00005012141	ENSMZEG00005012122 #8	mybpc2b (ENSMZEG00005011992) #10	ENSMZEG00005011951 #11	LRRC4B (ENSMZEG00005011944) #12	ENSMZEG00005011939 #13	USP31 (ENSMZEG00005011921) #14	cog7 (ENSMZEG00005011883) #15	ENSMZEG00005011875 #16	MSS51 (ENSMZEG00005011864) #17	ENSMZEG00005011857 #18	CAPN15 (ENSMZEG00005011822) #19	ENSMZEG00005011807	ENSMZEG00005011797 #20	nog2 (ENSMZEG00005011791) #22	ntn2 (ENSMZEG00005011774) #25	ENSMZEG00005011740 #26	TBC1D24 (ENSMZEG00005011724) #27	ATP6V0C (ENSMZEG00005011714) #28	nubp2 (ENSMZEG00005011700) #29	ENSMZEG00005011678 #30	ENSMZEG00005011684 #31	ENSMZEG00005011652 #32	ENSMZEG00005011647	ENSMZEG00005011634	ENSMZEG00005011619	WDR90 (ENSMZEG00005011589)	h1-0 (ENSMZEG00005011567)	rhot2 (ENSMZEG00005011542)	rhbdl1 (ENSMZEG00005011521)
P. nyererei	MODERN SPECIES	518	ENSPNYG00000013656	ENSPNYG00000013628	PPFIA3 (ENSPNYG00000013576)	ENSPNYG00000013458	ENSPNYG00000013434 #8	mybpc2b (ENSPNYG00000013287) #10	ENSPNYG00000013206 #11	LRRC4B (ENSPNYG00000013161) #12	ENSPNYG00000013141 #13	USP31 (ENSPNYG00000013096) #14	cog7 (ENSPNYG00000013050) #15	ENSPNYG00000013031 #16	MSS51 (ENSPNYG00000013015) #17	MSS51 (ENSPNYG00000012997) #18	CAPN15 (ENSPNYG00000012944) #19	nog2 (ENSPNYG00000012917) #22	ntn2 (ENSPNYG00000012852) #25	ENSPNYG00000012782 #26	TBC1D24 (ENSPNYG00000012761) #27	ATP6V0C (ENSPNYG00000012737) #28	nubp2 (ENSPNYG00000012702) #29	ENSPNYG00000012679 #30	ENSPNYG00000012607 #31	ENSPNYG00000012564 #32
Burton s mouthbrooder	MODERN SPECIES	457	PPFIA3 (ENSHBUG00000018291)	ENSHBUG00000000863	ENSHBUG00000018059 #8	mybpc2b (ENSHBUG00000018037) #10	ENSHBUG00000017849 #11	LRRC4B (ENSHBUG00000017836) #12	ENSHBUG00000017827 #13	USP31 (ENSHBUG00000017808) #14	cog7 (ENSHBUG00000017783) #15	ENSHBUG00000017688 #16	MSS51 (ENSHBUG00000017668) #17	MSS51 (ENSHBUG00000017653) #18	CAPN15 (ENSHBUG00000017628) #19	ENSHBUG00000017544 #20	ENSHBUG00000017498	nog2 (ENSHBUG00000017486) #22	ntn2 (ENSHBUG00000017474) #25	ENSHBUG00000017459 #26	TBC1D24 (ENSHBUG00000017438) #27	ATP6V0C (ENSHBUG00000017412) #28	nubp2 (ENSHBUG00000017399) #29	ENSHBUG00000017363 #30	ENSHBUG00000017355 #31	ENSHBUG00000017342 #32	ENSHBUG00000017303 #32	ABLIM1 (ENSHBUG00000017260) #33	ENSHBUG00000017239
Lyretail cichlid	MODERN SPECIES	499	pigp (ENSNBRG00000011687)	ENSNBRG00000011673	ENSNBRG00000011654	ENSNBRG00000011643	mybpc2b (ENSNBRG00000011543) #10	ENSNBRG00000011431 #11	LRRC4B (ENSNBRG00000011379) #12	ENSNBRG00000011361 #13	USP31 (ENSNBRG00000011312) #14	cog7 (ENSNBRG00000011267) #15	ENSNBRG00000011255 #16	MSS51 (ENSNBRG00000011221) #17	ENSNBRG00000011209 #18	CAPN15 (ENSNBRG00000011154) #19	ENSNBRG00000011132 #21	nog2 (ENSNBRG00000011119) #22	ntn2 (ENSNBRG00000011103) #25	ENSNBRG00000011033 #26	TBC1D24 (ENSNBRG00000010990) #27	ATP6V0C (ENSNBRG00000010977) #28	nubp2 (ENSNBRG00000010955) #29	ENSNBRG00000010927 #30	ENSNBRG00000010896 #31
Nile tilapia	MODERN SPECIES	20	PPFIA3 (ENSONIG00000020046)	ENSONIG00000030987	ENSONIG00000020044 #8	ENSONIG00000031861	mybpc2b (ENSONIG00000020041) #10	ENSONIG00000020039 #11	LRRC4B (ENSONIG00000020038) #12	ENSONIG00000040988 #13	USP31 (ENSONIG00000020034) #14	cog7 (ENSONIG00000020033) #15	ENSONIG00000033430	MSS51 (ENSONIG00000020032) #17	MSS51 (ENSONIG00000020031) #18	CAPN15 (ENSONIG00000020030) #19	ENSONIG00000020029 #20	nog2 (ENSONIG00000021210) #22	ntn2 (ENSONIG00000020028) #25	ENSONIG00000020027 #26	TBC1D24 (ENSONIG00000020026) #27	ATP6V0C (ENSONIG00000020025) #28	nubp2 (ENSONIG00000020024) #29	ENSONIG00000020023 #30	ENSONIG00000020022 #31	ENSONIG00000020021 #32	ABLIM1 (ENSONIG00000020020) #33	MPRIP (ENSONIG00000020019)	ENSONIG00000029887 #34	crp2 (ENSONIG00000038131) #35	stub1 (ENSONIG00000042182) #37	metrn (ENSONIG00000020015)	RAB11FIP3 (ENSONIG00000020009)
Midas cichlid	MODERN SPECIES	194						mybpc2b (ENSACIG00000007807) #10	ENSACIG00000007755 #11	LRRC4B (ENSACIG00000007734) #12	ENSACIG00000007721 #13	USP31 (ENSACIG00000007685) #14	cog7 (ENSACIG00000007639) #15	ENSACIG00000007632 #16	MSS51 (ENSACIG00000007618) #17	MSS51 (ENSACIG00000007594) #18	CAPN15 (ENSACIG00000007568) #19	nog2 (ENSACIG00000007558) #22	ntn2 (ENSACIG00000007431) #25	ENSACIG00000007364 #26	TBC1D24 (ENSACIG00000007348) #27	ATP6V0C (ENSACIG00000007338) #28	nubp2 (ENSACIG00000007318) #29	ENSACIG00000007278 #30	ENSACIG00000007253 #31	ENSACIG00000007227 #32	ablim1b (ENSACIG00000007205) #33	ENSACIG00000007193	ENSACIG00000007148	ENSACIG00000007133 #34	crp2 (ENSACIG00000007113) #35	stub1 (ENSACIG00000007066) #37	metrn (ENSACIG00000007044)