Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Carangaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Greater amberjack	MODERN SPECIES	27	PPFIA3 (ENSSDUG00000023357) #7	ENSSDUG00000000073 #8	ENSSDUG00000000135 #9	ENSSDUG00000000162 #10	mybpc2b (ENSSDUG00000000197) #11	ENSSDUG00000000332 #12	LRRC4B (ENSSDUG00000000408) #13	ENSSDUG00000000439 #14	USP31 (ENSSDUG00000000463) #15	cog7 (ENSSDUG00000000519) #16	ENSSDUG00000000587 #17	MSS51 (ENSSDUG00000000606) #18	MSS51 (ENSSDUG00000000640) #19	CAPN15 (ENSSDUG00000000678) #20	ENSSDUG00000000750 #21	nog2 (ENSSDUG00000000764) #22	ntn2 (ENSSDUG00000000780) #23	ENSSDUG00000000851 #24	TBC1D24 (ENSSDUG00000000932) #25	ATP6V0C (ENSSDUG00000000954) #26	nubp2 (ENSSDUG00000000978) #27	ENSSDUG00000001009 #28	ENSSDUG00000001038 #29	ENSSDUG00000001052 #30	ablim1b (ENSSDUG00000001109) #31	MPRIP (ENSSDUG00000001143) #32	ENSSDUG00000001215 #33	ENSSDUG00000001243 #34	crp2 (ENSSDUG00000001278) #35	stub1 (ENSSDUG00000001294) #36	metrn (ENSSDUG00000001304) #37
Yellowtail amberjack	MODERN SPECIES	2878	ENSSLDG00000011463 ##10	ENSSLDG00000011475 #9	ENSSLDG00000011498 #10	mybpc2b (ENSSLDG00000011549) #11	ENSSLDG00000011659 #12	LRRC4B (ENSSLDG00000011676) #13	ENSSLDG00000011691 #14	USP31 (ENSSLDG00000011705) #15	cog7 (ENSSLDG00000011729) #16	ENSSLDG00000011774 #17	ENSSLDG00000011784 #17	MSS51 (ENSSLDG00000011799) #19	ENSSLDG00000011819 #18	CAPN15 (ENSSLDG00000011854) #20	ENSSLDG00000011931 #21	nog2 (ENSSLDG00000011955) #22	ntn2 (ENSSLDG00000011975) #23	ENSSLDG00000012002 #24	TBC1D24 (ENSSLDG00000012032) #25	ATP6V0C (ENSSLDG00000012068) #26	nubp2 (ENSSLDG00000012088) #27	ENSSLDG00000012132 #28	ENSSLDG00000012162 #29	ENSSLDG00000012191 #30	ablim1b (ENSSLDG00000012253) #31	MPRIP (ENSSLDG00000012327) #32	ENSSLDG00000012487 #33	PRR35 (ENSSLDG00000012526) #34	crp2 (ENSSLDG00000012559) #35	stub1 (ENSSLDG00000012577) #36	metrn (ENSSLDG00000012588) #37
Barramundi perch	MODERN SPECIES	195	ENSLCAG00010000761 #8	ENSLCAG00010000745 ##10	ENSLCAG00010000741 #10	ENSLCAG00010000739 #9	mybpc2b (ENSLCAG00010000705) #11	ENSLCAG00010000655 #12	LRRC4B (ENSLCAG00010000649) #13	ENSLCAG00010000644	ENSLCAG00010000639 #14	USP31 (ENSLCAG00010000614) #15	cog7 (ENSLCAG00010000548) #16	ENSLCAG00010000519 #17	ENSLCAG00010000502 #17	MSS51 (ENSLCAG00010000491) #18	MSS51 (ENSLCAG00010000486) #19	nog2 (ENSLCAG00010000410) #22	ntn2 (ENSLCAG00010000396) #23	ENSLCAG00010000383 #24	TBC1D24 (ENSLCAG00010000372) #25	ATP6V0C (ENSLCAG00010000340) #26	nubp2 (ENSLCAG00010000302) #27	ENSLCAG00010000282 #28	ENSLCAG00010000268 #29	ENSLCAG00010000239 #30	ablim1b (ENSLCAG00010026799) #31	MPRIP (ENSLCAG00010026790) #32	ENSLCAG00010026773	ENSLCAG00010026769 #34	crp2 (ENSLCAG00010026767) #35	stub1 (ENSLCAG00010026765) #36	metrn (ENSLCAG00010026764) #37
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Turbot	MODERN SPECIES	9	ENSSMAG00000035681 ##10	ENSSMAG00000015118 #9	ENSSMAG00000015097 #10	ENSSMAG00000014766 #11	ENSSMAG00000014708 #12	ENSSMAG00000014678 #13	ENSSMAG00000014663 #14	ENSSMAG00000014625 #15	ENSSMAG00000014575 #16	ENSSMAG00000029485 #17	ENSSMAG00000014549 #18	ENSSMAG00000014526 #19	ENSSMAG00000014472 #20	ENSSMAG00000014414 #21	ENSSMAG00000031672	nog2 (ENSSMAG00000014390) #22	ENSSMAG00000014384	ENSSMAG00000014370	ntn2 (ENSSMAG00000014362) #23	ENSSMAG00000014337 #24	ENSSMAG00000014320 #25	ATP6V0C (ENSSMAG00000014308) #26	nubp2 (ENSSMAG00000014291) #27	ENSSMAG00000014256 #28	ENSSMAG00000014224 #29	ENSSMAG00000014201 #30	ENSSMAG00000014171 #31	ENSSMAG00000013881 #34	ENSSMAG00000035710 #35	ENSSMAG00000013859	ENSSMAG00000013837 #36
Tongue sole	MODERN SPECIES	18	ENSCSEG00000019318 ##7	ENSCSEG00000019315 ##7	ENSCSEG00000019310 #8	ENSCSEG00000019307	ENSCSEG00000019303 ##10	ENSCSEG00000019291 #10	cog7 (ENSCSEG00000019266) #16	USP31 (ENSCSEG00000019256) #15	LRRC4B (ENSCSEG00000019254) #13	ENSCSEG00000019250 #12	mybpc2b (ENSCSEG00000019242) #11	ENSCSEG00000019232	ENSCSEG00000019230 #18	MSS51 (ENSCSEG00000018930) #19	CAPN15 (ENSCSEG00000018917) #20	nog2 (ENSCSEG00000018913) #22	TBC1D24 (ENSCSEG00000018904) #25	ATP6V0C (ENSCSEG00000018902) #26	nubp2 (ENSCSEG00000018886) #27	ENSCSEG00000018877 #34	ENSCSEG00000018867	ENSCSEG00000018856	ftsj1 (ENSCSEG00000018843)	ENSCSEG00000018839	ENSCSEG00000018796	aldoaa (ENSCSEG00000018782)	ENSCSEG00000018666	zgc:112038 (ENSCSEG00000018654)	ENSCSEG00000018643	ENSCSEG00000018639	ENSCSEG00000017808
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000011134 #8	ENSMAMG00000026681 ##10	ENSMAMG00000011121 #9	ENSMAMG00000011107 #10	ENSMAMG00000011018 #11	ENSMAMG00000010966 #12	ENSMAMG00000010950 #13	ENSMAMG00000010942	ENSMAMG00000010936 #14	ENSMAMG00000010891 #15	ENSMAMG00000010856 #16	ENSMAMG00000010812 #18	ENSMAMG00000026355 #19	ENSMAMG00000010762 #20	ENSMAMG00000010756	nog2 (ENSMAMG00000010740) #22	ntn2 (ENSMAMG00000010731) #23	ENSMAMG00000010692 #24	ENSMAMG00000010662 #25	ATP6V0C (ENSMAMG00000025214) #26	nubp2 (ENSMAMG00000010637) #27	ENSMAMG00000010617 #28	ENSMAMG00000010583 #29	ENSMAMG00000010548 #30	ENSMAMG00000010525 #31	ENSMAMG00000010355	ENSMAMG00000010337 #34	ENSMAMG00000010328 #35	ENSMAMG00000010308 #36	metrn (ENSMAMG00000010298) #37	tmem204 (ENSMAMG00000025271)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Climbing perch	MODERN SPECIES	10	ENSATEG00000017515 #7	ENSATEG00000017494 #8	ENSATEG00000017470 ##10	ENSATEG00000017459 #9	ENSATEG00000029745 #10	ENSATEG00000017258 #11	ENSATEG00000017164 #12	ENSATEG00000028786 #13	ENSATEG00000017107 #14	ENSATEG00000017057 #15	ENSATEG00000016997 #16	ENSATEG00000026789 #18	ENSATEG00000030151 #19	ENSATEG00000016822 #20	ENSATEG00000016799 #21	nog2 (ENSATEG00000016782) #22	ntn2 (ENSATEG00000016766) #23	ENSATEG00000016755 #24	ENSATEG00000016732 #25	ATP6V0C (ENSATEG00000016719) #26	nubp2 (ENSATEG00000016699) #27	ENSATEG00000016686 #28	ENSATEG00000016671 #29	ENSATEG00000016644 #30	ENSATEG00000016599 #31	ENSATEG00000016451 #32	ENSATEG00000016425 #33	ENSATEG00000016409 #34	ENSATEG00000027066 #35	ENSATEG00000016370 #36	metrn (ENSATEG00000016359) #37
Siamese fighting fish	MODERN SPECIES	9	fgf21 (ENSBSLG00000008833)	PPFIA3 (ENSBSLG00000007913) #7	ENSBSLG00000007380 #8	ENSBSLG00000007365 ##10	ENSBSLG00000007361 #9	mybpc2b (ENSBSLG00000007218) #11	ENSBSLG00000006696 #12	LRRC4B (ENSBSLG00000005923) #13	HS3ST2 (ENSBSLG00000005918)	USP31 (ENSBSLG00000005887) #15	cog7 (ENSBSLG00000005525) #16	MSS51 (ENSBSLG00000005455) #18	ENSBSLG00000005423 #19	ENSBSLG00000005415 #20	ENSBSLG00000005142 #21	nog2 (ENSBSLG00000005108) #22	ntn2 (ENSBSLG00000005025) #23	ENSBSLG00000004980 #24	TBC1D24 (ENSBSLG00000020690) #25	ATP6V0C (ENSBSLG00000020689) #26	nubp2 (ENSBSLG00000020683) #27	ENSBSLG00000020675 #28	ENSBSLG00000020673 #30	ABLIM1 (ENSBSLG00000020669) #31	PRR35 (ENSBSLG00000020664) #34	crp2 (ENSBSLG00000020662) #35	stub1 (ENSBSLG00000020657) #36	metrn (ENSBSLG00000020656) #37	ENSBSLG00000020655	tmem204 (ENSBSLG00000020653)	IFT140 (ENSBSLG00000020602)
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000167425	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Fugu	MODERN SPECIES		ENSTRUG00000013290	ENSTRUG00000013329	PPFIA3 (ENSTRUG00000013342) #7	ENSTRUG00000027287 #8	ENSTRUG00000028919 ##10	ENSTRUG00000024447 #9	mybpc2b (ENSTRUG00000013734) #11	ENSTRUG00000013930 #12	LRRC4B (ENSTRUG00000002618) #13	ENSTRUG00000014088 #14	cog7 (ENSTRUG00000014115) #16	MSS51 (ENSTRUG00000032136) #18	MSS51 (ENSTRUG00000014257) #19	CAPN15 (ENSTRUG00000014283) #20	ENSTRUG00000031750 #21	nog2 (ENSTRUG00000014323) #22	ntn2 (ENSTRUG00000014332) #23	TBC1D24 (ENSTRUG00000014498) #25	ENSTRUG00000025985 #28	ENSTRUG00000023248 #29	ENSTRUG00000014585 #30	ABLIM1 (ENSTRUG00000027510) #31	MPRIP (ENSTRUG00000014685) #32	ENSTRUG00000025439 #34	crp2 (ENSTRUG00000014803) #35	stub1 (ENSTRUG00000014817) #36	metrn (ENSTRUG00000025221) #37	tmem204 (ENSTRUG00000028725)	IFT140 (ENSTRUG00000014865)	telo2 (ENSTRUG00000014963)	rab11fip3 (ENSTRUG00000015066)
Tetraodon	MODERN SPECIES	13	tlcd3ba (ENSTNIG00000006532)	ENSTNIG00000001006	ENSTNIG00000006576	PPFIA3 (ENSTNIG00000006577) #7	mybpc2b (ENSTNIG00000012787) #11	ENSTNIG00000012788 #12	LRRC4B (ENSTNIG00000012789) #13	ENSTNIG00000012790 #14	USP31 (ENSTNIG00000012791) #15	cog7 (ENSTNIG00000012792) #16	MSS51 (ENSTNIG00000012793) #18	MSS51 (ENSTNIG00000012794) #19	ENSTNIG00000001735 #20	ENSTNIG00000012795 #20	ENSTNIG00000012796 #21	nog2 (ENSTNIG00000012797) #22	ntn2 (ENSTNIG00000012798) #23	ENSTNIG00000012799 #24	TBC1D24 (ENSTNIG00000012800) #25	ATP6V0C (ENSTNIG00000012801) #26	nubp2 (ENSTNIG00000012802) #27	ENSTNIG00000012803 #28	ENSTNIG00000012804 #29	ENSTNIG00000012805 #30	ENSTNIG00000001356 #30	ABLIM1 (ENSTNIG00000012806) #31	MPRIP (ENSTNIG00000012807) #32	PRR35 (ENSTNIG00000012808) #34	crp2 (ENSTNIG00000000855) #35	stub1 (ENSTNIG00000012809) #36	metrn (ENSTNIG00000012810) #37
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Ballan wrasse	MODERN SPECIES	103	ENSLBEG00000013029 ##10	ENSLBEG00000013054 #9	ENSLBEG00000013069 #10	mybpc2b (ENSLBEG00000013094) #11	ENSLBEG00000013177 #12	LRRC4B (ENSLBEG00000013211) #13	ENSLBEG00000013243 #14	USP31 (ENSLBEG00000013316) #15	cog7 (ENSLBEG00000013453) #16	ENSLBEG00000013548 #17	MSS51 (ENSLBEG00000013561) #18	MSS51 (ENSLBEG00000013576) #19	CAPN15 (ENSLBEG00000013641) #20	ENSLBEG00000013719	ENSLBEG00000013738 #21	nog2 (ENSLBEG00000013774) #22	ntn2 (ENSLBEG00000013806) #23	ENSLBEG00000013844 #24	TBC1D24 (ENSLBEG00000013880) #25	ATP6V0C (ENSLBEG00000013910) #26	nubp2 (ENSLBEG00000013929) #27	ENSLBEG00000013963 #28	ENSLBEG00000014000 #29	ENSLBEG00000014037 #30	ablim1b (ENSLBEG00000014091) #31	MPRIP (ENSLBEG00000014183) #32	ENSLBEG00000014299 #33	ENSLBEG00000014324 #34	crp2 (ENSLBEG00000014340) #35	stub1 (ENSLBEG00000014362) #36	metrn (ENSLBEG00000014389) #37
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Perciformes	ANCESTRAL SPECIES	9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000171105	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Lumpfish	MODERN SPECIES	10	PPFIA3 (ENSCLMG00005011890) #7	ENSCLMG00005011887 #8	ENSCLMG00005011885 ##10	ENSCLMG00005011884 #9	ENSCLMG00005011883 #10	mybpc2b (ENSCLMG00005011580) #11	ENSCLMG00005011566 #12	LRRC4B (ENSCLMG00005011538) #13	ENSCLMG00005011534 #14	USP31 (ENSCLMG00005011531) #15	cog7 (ENSCLMG00005011481) #16	MSS51 (ENSCLMG00005011476) #18	ENSCLMG00005011475 #19	CAPN15 (ENSCLMG00005011469) #20	ENSCLMG00005011462 #21	nog2 (ENSCLMG00005011461) #22	ntn2 (ENSCLMG00005011460) #23	ENSCLMG00005011457 #24	TBC1D24 (ENSCLMG00005011375) #25	ATP6V0C (ENSCLMG00005011370) #26	nubp2 (ENSCLMG00005011341) #27	ENSCLMG00005011338 #28	ENSCLMG00005011337 #29	ENSCLMG00005011321 #30	ENSCLMG00005011315 #31	MPRIP (ENSCLMG00005011092) #32	ENSCLMG00005011088 #33	ENSCLMG00005011085	PRR35 (ENSCLMG00005011084) #34	crp2 (ENSCLMG00005011083) #35	stub1 (ENSCLMG00005011082) #36
Stickleback	MODERN SPECIES	5	ENSGACG00000008100	ENSGACG00000008107 #10	mybpc2b (ENSGACG00000008110) #11	ENSGACG00000008187 #12	LRRC4B (ENSGACG00000008204) #13	ENSGACG00000008205	HS3ST2 (ENSGACG00000008211)	ENSGACG00000008213	USP31 (ENSGACG00000008214) #15	cog7 (ENSGACG00000008223) #16	ENSGACG00000008231 #17	MSS51 (ENSGACG00000008232) #19	ENSGACG00000008245	ENSGACG00000008248 #20	ENSGACG00000008256 #21	nog2 (ENSGACG00000008267) #22	ntn2 (ENSGACG00000008270) #23	ENSGACG00000008273 #24	TBC1D24 (ENSGACG00000008278) #25	ATP6V0C (ENSGACG00000008293) #26	nubp2 (ENSGACG00000008320) #27	ENSGACG00000008335 #28	ENSGACG00000008342 #29	ENSGACG00000008345	ENSGACG00000008354 #30	ablim1b (ENSGACG00000008370) #31	MPRIP (ENSGACG00000008379) #32	ENSGACG00000008397	PRR35 (ENSGACG00000008401) #34	crp2 (ENSGACG00000008405) #35	stub1 (ENSGACG00000008414) #36
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000171105	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00940000163071	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000022417 #7	ENSCGOG00000022458 #8	ENSCGOG00000022460 ##10	ENSCGOG00000022462 #9	ENSCGOG00000022464 #10	mybpc2b (ENSCGOG00000022522) #11	ENSCGOG00000023638 #12	LRRC4B (ENSCGOG00000023642) #13	HS3ST2 (ENSCGOG00000023645)	cog7 (ENSCGOG00000023661) #16	ENSCGOG00000023755 #17	ENSCGOG00000023757	MSS51 (ENSCGOG00000023759) #19	ENSCGOG00000023766 #21	ENSCGOG00000023771	nog2 (ENSCGOG00000023772) #22	ntn2 (ENSCGOG00000023774) #23	ENSCGOG00000023779 #24	TBC1D24 (ENSCGOG00000023787) #25	ATP6V0C (ENSCGOG00000023789) #26	nubp2 (ENSCGOG00000023793) #27	ENSCGOG00000023798 #28	ENSCGOG00000002375 #29	ENSCGOG00000002387 #30	ablim1b (ENSCGOG00000002421) #31	MPRIP (ENSCGOG00000002508) #32	ENSCGOG00000002842 #33	PRR35 (ENSCGOG00000002848) #34	metrn (ENSCGOG00000002854) #37	ENSCGOG00000002857	IFT140 (ENSCGOG00000002896)
Pike perch	MODERN SPECIES	3	ENSSLUG00000007535 #8	ENSSLUG00000007546 ##10	ENSSLUG00000007554 #9	ENSSLUG00000007564 #10	mybpc2b (ENSSLUG00000007632) #11	ENSSLUG00000008501 #12	LRRC4B (ENSSLUG00000008516) #13	ENSSLUG00000008519 #14	USP31 (ENSSLUG00000008523) #15	cog7 (ENSSLUG00000008549) #16	MSS51 (ENSSLUG00000008603) #18	MSS51 (ENSSLUG00000008611) #19	CAPN15 (ENSSLUG00000008620) #20	ENSSLUG00000008629	ENSSLUG00000008640 #21	nog2 (ENSSLUG00000008648) #22	ntn2 (ENSSLUG00000008652) #23	ENSSLUG00000008663 #24	TBC1D24 (ENSSLUG00000008676) #25	ATP6V0C (ENSSLUG00000008682) #26	nubp2 (ENSSLUG00000008697) #27	ENSSLUG00000008704 #28	ENSSLUG00000008708 #29	ENSSLUG00000008716 #30
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
European seabass	MODERN SPECIES	11	ENSDLAG00005009944 #7	ENSDLAG00005009857 #8	ENSDLAG00005009847 ##10	ENSDLAG00005009831 #9	ENSDLAG00005009828 #10	ENSDLAG00005009509 #11	ENSDLAG00005009401 #12	LRRC4B (ENSDLAG00005027065) #13	ENSDLAG00005009392	HS3ST2 (ENSDLAG00005009389)	ENSDLAG00005009372 #15	COG7 (ENSDLAG00005009341) #16	ENSDLAG00005034965 #18	ENSDLAG00005009199 #20	ENSDLAG00005009161 #21	nog2 (ENSDLAG00005009159) #22	ntn2 (ENSDLAG00005009141) #23	ENSDLAG00005009119 #24	ENSDLAG00005009116 #25	VATL (ENSDLAG00005030834) #26	nubp2 (ENSDLAG00005009011) #27	ENSDLAG00005033812 #28	ENSDLAG00005032822 #29	ENSDLAG00005008970 #30	ENSDLAG00005008922 #31	ENSDLAG00005007478 #32	ENSDLAG00005007415	ENSDLAG00005007396 #34	ENSDLAG00005007389 #35	ENSDLAG00005007372 #36	metrn (ENSDLAG00005027335) #37
Large yellow croaker	MODERN SPECIES	488	PPFIA3 (ENSLCRG00005007020) #7	ENSLCRG00005007158 #8	ENSLCRG00005007160 ##10	ENSLCRG00005007161 #9	ENSLCRG00005007162 #10	mybpc2b (ENSLCRG00005007183) #11	ENSLCRG00005010195 #12	LRRC4B (ENSLCRG00005010197) #13	ENSLCRG00005010199 #14	USP31 (ENSLCRG00005010204) #15	cog7 (ENSLCRG00005010213) #16	MSS51 (ENSLCRG00005010219) #18	MSS51 (ENSLCRG00005010220) #19	CAPN15 (ENSLCRG00005010225) #20	ENSLCRG00005010420 #21	nog2 (ENSLCRG00005010428) #22	ntn2 (ENSLCRG00005010430) #23	ENSLCRG00005010432 #24	TBC1D24 (ENSLCRG00005010433) #25	ATP6V0C (ENSLCRG00005010434) #26	nubp2 (ENSLCRG00005010439) #27	ENSLCRG00005010521 #28	ENSLCRG00005010524 #29	ENSLCRG00005010525 #30	ablim1b (ENSLCRG00005010527) #31	MPRIP (ENSLCRG00005010537) #32	ENSLCRG00005011143 #33	PRR35 (ENSLCRG00005011147) #34	crp2 (ENSLCRG00005011150) #35	stub1 (ENSLCRG00005007262) #36	metrn (ENSLCRG00005007265) #37
Gilthead seabream	MODERN SPECIES	12	PPFIA3 (ENSSAUG00010023520) #7	ENSSAUG00010023491 #8	ENSSAUG00010023489 ##10	ENSSAUG00010023488 #9	ENSSAUG00010023487 #10	mybpc2b (ENSSAUG00010016277) #11	ENSSAUG00010016199 #12	LRRC4B (ENSSAUG00010016196) #13	HS3ST2 (ENSSAUG00010016195)	USP31 (ENSSAUG00010016188) #15	cog7 (ENSSAUG00010016184) #16	MSS51 (ENSSAUG00010016183) #18	MSS51 (ENSSAUG00010016181) #19	CAPN15 (ENSSAUG00010016176) #20	ENSSAUG00010016172 #21	nog2 (ENSSAUG00010016171) #22	ntn2 (ENSSAUG00010016169) #23	ENSSAUG00010016162 #24	TBC1D24 (ENSSAUG00010016158) #25	ATP6V0C (ENSSAUG00010016151) ##26	nubp2 (ENSSAUG00010016136) #27	ENSSAUG00010016130 #28	ENSSAUG00010018228 #29	ENSSAUG00010018226 #30	ablim1b (ENSSAUG00010016992) #31	MPRIP (ENSSAUG00010016963) #32	ENSSAUG00010016957	PRR35 (ENSSAUG00010016954) #34	crp2 (ENSSAUG00010016953) #35	stub1 (ENSSAUG00010016951) #36	metrn (ENSSAUG00010016950) #37
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000015528
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015014925 ##10	CU896602.1 (ENSNFUG00015014933) #9	MYBPC2B (ENSNFUG00015015418) #11	ENSNFUG00015020555 #12	LRRC4BB (ENSNFUG00015020564) #13	ENSNFUG00015020566	HS3ST2 (ENSNFUG00015020570)	USP31 (ENSNFUG00015020572) #15	COG7 (ENSNFUG00015020600) #16	ENSNFUG00015020756	MSS51 (ENSNFUG00015020759) #18	MSS51 (ENSNFUG00015020764) #19	SOLH (ENSNFUG00015020769) #20	CABZ01117977.1 (ENSNFUG00015020828) #21	ENSNFUG00015020846	NOG2 (ENSNFUG00015020847) #22	ntn2 (ENSNFUG00015020850) #23	ENSNFUG00015020855 #24	Nfu_g_1_022957 (ENSNFUG00015020862) #25	NUBP2 (ENSNFUG00015020865) #27	CU929145.4 (ENSNFUG00015020868) #28	CABZ01072828.1 (ENSNFUG00015020869) #29	ENSNFUG00015020873	UBE2I2 (ENSNFUG00015020875)	kctd5a (ENSNFUG00015020878)	pdpk1b (ENSNFUG00015020901)	tsr3 (ENSNFUG00015021441)	GNPTG (ENSNFUG00015021446)	ENSNFUG00015021462	ENSNFUG00015021463	ENSNFUG00015021464
Mangrove rivulus	MODERN SPECIES	43	ENSKMAG00000014603 #8	ENSKMAG00000014549 ##10	ENSKMAG00000014533 #9	mybpc2b (ENSKMAG00000014296) #11	ENSKMAG00000014209 #12	LRRC4B (ENSKMAG00000014177) #13	ENSKMAG00000014153	ENSKMAG00000014138 #14	USP31 (ENSKMAG00000014093) #15	cog7 (ENSKMAG00000014031) #16	ENSKMAG00000014004 #17	MSS51 (ENSKMAG00000013985) #18	MSS51 (ENSKMAG00000013961) #19	ENSKMAG00000013932 #21	CAPN15 (ENSKMAG00000013861) #20	nog2 (ENSKMAG00000013828) #22	ntn2 (ENSKMAG00000013813) #23	ENSKMAG00000013779 #24	TBC1D24 (ENSKMAG00000013755) #25	ATP6V0C (ENSKMAG00000013738) #26	nubp2 (ENSKMAG00000013705) #27	ENSKMAG00000013678 #28	ENSKMAG00000013655 #29	ENSKMAG00000013619 #30	ENSKMAG00000013592 #31	MPRIP (ENSKMAG00000013360) #32	ENSKMAG00000013265 #33	ENSKMAG00000013252	ENSKMAG00000013232 #34	crp2 (ENSKMAG00000013219) #35	stub1 (ENSKMAG00000013186) #36
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00990000204060	ENSGT00390000001390.b #37
Guppy	MODERN SPECIES	449	ENSPREG00000019581	ENSPREG00000019558	PIGT (ENSPREG00000019528)	phactr3a (ENSPREG00000019481)	ENSPREG00000019379	ENSPREG00000019354 #12	LRRC4B (ENSPREG00000019331) #13	ENSPREG00000019296 #14	USP31 (ENSPREG00000019269) #15	cog7 (ENSPREG00000019233) #16	ENSPREG00000019223 #17	ENSPREG00000019214 #17	ENSPREG00000019204 #18	MSS51 (ENSPREG00000019194) #19	CAPN15 (ENSPREG00000019164) #20	nog2 (ENSPREG00000019142) #22	ntn2 (ENSPREG00000019132) #23	ENSPREG00000018954 #24	TBC1D24 (ENSPREG00000018921) #25	ATP6V0C (ENSPREG00000018910) #26	nubp2 (ENSPREG00000018897) #27	ENSPREG00000018838 #28	ENSPREG00000018817 #29	ENSPREG00000018795 #30	ENSPREG00000018778 #31	ENSPREG00000018744 #32	PRR35 (ENSPREG00000018723) #34	crp2 (ENSPREG00000018713) #35	stub1 (ENSPREG00000018698) #36	ENSPREG00000018685	metrn (ENSPREG00000018650) #37
NAME_6	ANCESTRAL SPECIES	118	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25
Sailfin molly	MODERN SPECIES	746															ENSPLAG00000010928 #21	nog2 (ENSPLAG00000010943) #22	ntn2 (ENSPLAG00000011251) #23	ENSPLAG00000011268 #24	TBC1D24 (ENSPLAG00000011294) #25
Amazon molly	MODERN SPECIES	531	mybpc2b (ENSPFOG00000017525) #11	ENSPFOG00000017447 #12	LRRC4B (ENSPFOG00000017440) #13	ENSPFOG00000017439	ENSPFOG00000017435 #14	USP31 (ENSPFOG00000017384) #15	ENSPFOG00000020789 #17	ENSPFOG00000022049 #17	cog7 (ENSPFOG00000017289) #16	ENSPFOG00000020788 #17	ENSPFOG00000022363 #17	MSS51 (ENSPFOG00000017283) #18	MSS51 (ENSPFOG00000017264) #19	CAPN15 (ENSPFOG00000017205) #20	ENSPFOG00000017141 #21	nog2 (ENSPFOG00000020787) #22	ntn2 (ENSPFOG00000017087) #23	ENSPFOG00000016990 #24
Platyfish	MODERN SPECIES	1	PPFIA3 (ENSXMAG00000001587) #7	ENSXMAG00000007344 #8	ENSXMAG00000007346 ##10	mybpc2b (ENSXMAG00000007350) #11	ENSXMAG00000022346 #12	LRRC4B (ENSXMAG00000023350) #13	ENSXMAG00000010788	ENSXMAG00000024688 #14	USP31 (ENSXMAG00000019002) #15	cog7 (ENSXMAG00000019008) #16	ENSXMAG00000019435 #17	MSS51 (ENSXMAG00000019041) #18	MSS51 (ENSXMAG00000019043) #19	CAPN15 (ENSXMAG00000019044) #20	ENSXMAG00000008777 #21	nog2 (ENSXMAG00000019533) #22	ntn2 (ENSXMAG00000008784) #23	ENSXMAG00000023095	ENSXMAG00000000130 #24	TBC1D24 (ENSXMAG00000000127) #25	ATP6V0C (ENSXMAG00000009861) #26	nubp2 (ENSXMAG00000009869) #27	ENSXMAG00000009890 #28	ENSXMAG00000020840	ENSXMAG00000009893 #29	ENSXMAG00000000122 #30	ENSXMAG00000000107 #31	ENSXMAG00000029437	MPRIP (ENSXMAG00000000091) #32	PRR35 (ENSXMAG00000000090) #34	crp2 (ENSXMAG00000024415) #35
NAME_4	ANCESTRAL SPECIES	15	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00940000164586.g.b	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36
Mummichog	MODERN SPECIES	2201	PPFIA3 (ENSFHEG00000002376) #7	ENSFHEG00000002332 #8	ENSFHEG00000002301 ##10	ENSFHEG00000002297 #9	mybpc2b (ENSFHEG00000002271) #11	ENSFHEG00000002212 #12	LRRC4B (ENSFHEG00000002191) #13	ENSFHEG00000002188	HS3ST2 (ENSFHEG00000002181)	USP31 (ENSFHEG00000002177) #15	cog7 (ENSFHEG00000002164) #16	MSS51 (ENSFHEG00000002149) #18	MSS51 (ENSFHEG00000002138) #19	CAPN15 (ENSFHEG00000002132) #20	ENSFHEG00000000060 #21	nog2 (ENSFHEG00000002118) #22	ntn2 (ENSFHEG00000002114) #23	ENSFHEG00000002100 #24	TBC1D24 (ENSFHEG00000002051) #25	ATP6V0C (ENSFHEG00000002041) #26	nubp2 (ENSFHEG00000002036) #27	ENSFHEG00000002027 #28	ENSFHEG00000002023 #30	ablim1b (ENSFHEG00000002012) #31	ENSFHEG00000001983	MPRIP (ENSFHEG00000001970) #32	ENSFHEG00000001929	PRR35 (ENSFHEG00000001922) #34	crp2 (ENSFHEG00000001920) #35	stub1 (ENSFHEG00000001916) #36	metrn (ENSFHEG00000001910) #37
Sheepshead minnow	MODERN SPECIES	225					mybpc2b (ENSCVAG00000001429) #11	ENSCVAG00000001443 #12	LRRC4B (ENSCVAG00000001449) #13	ENSCVAG00000001454 #14	ENSCVAG00000001457 #15	cog7 (ENSCVAG00000001465) #16	ENSCVAG00000001468 #17	MSS51 (ENSCVAG00000001472) #18	MSS51 (ENSCVAG00000001479) #19	CAPN15 (ENSCVAG00000001490) #20	ENSCVAG00000001497	nog2 (ENSCVAG00000001502) #22	ntn2 (ENSCVAG00000001511) #23	ENSCVAG00000001524 #24	TBC1D24 (ENSCVAG00000001532) #25	ATP6V0C (ENSCVAG00000001537) #26	nubp2 (ENSCVAG00000001546) #27	ENSCVAG00000001550 #28	ENSCVAG00000001554 #29	ENSCVAG00000001563 #30	ablim1b (ENSCVAG00000000059) #31	ENSCVAG00000001574 ##31	MPRIP (ENSCVAG00000000066) #32	ENSCVAG00000001622	ENSCVAG00000001625 #34	crp2 (ENSCVAG00000001629) #35	stub1 (ENSCVAG00000001632) #36
Oryzias	ANCESTRAL SPECIES	11	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Indian medaka	MODERN SPECIES	17	ENSOMEG00000018237	ENSOMEG00000018222 ##7	PPFIA3 (ENSOMEG00000018206) #7	ENSOMEG00000018177 #10	mybpc2b (ENSOMEG00000018161) #11	ENSOMEG00000018089 #12	LRRC4B (ENSOMEG00000018057) #13	ENSOMEG00000018040 #14	USP31 (ENSOMEG00000018029) #15	cog7 (ENSOMEG00000017975) #16	ENSOMEG00000017920 #17	MSS51 (ENSOMEG00000000456) #18	ENSOMEG00000017899 #19	CAPN15 (ENSOMEG00000017877) #20	ENSOMEG00000017774 #21	nog2 (ENSOMEG00000017552) #22	ntn2 (ENSOMEG00000017535) #23	ENSOMEG00000017484 #24	TBC1D24 (ENSOMEG00000017447) #25	ENSOMEG00000000433 #28	nubp2 (ENSOMEG00000017373) #27	ENSOMEG00000017346 #29	ENSOMEG00000017305 #30	ABLIM1 (ENSOMEG00000017233) #31	MPRIP (ENSOMEG00000017141) #32	ENSOMEG00000016826 #34	metrn (ENSOMEG00000000423) #37	crp2 (ENSOMEG00000016738) #35	stub1 (ENSOMEG00000016713) #36	IFT140 (ENSOMEG00000016697)	tmem204 (ENSOMEG00000016665)
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000014684	PPFIA3 (ENSOJAG00000014764) #7	ENSOJAG00000015296 #8	ENSOJAG00000015379 #9	ENSOJAG00000015392 #10	mybpc2b (ENSOJAG00000015570) #11	ENSOJAG00000017336 #12	LRRC4B (ENSOJAG00000017368) #13	ENSOJAG00000017372 #14	USP31 (ENSOJAG00000017381) #15	cog7 (ENSOJAG00000017398) #16	MSS51 (ENSOJAG00000017466) #18	ENSOJAG00000017470 #19	CAPN15 (ENSOJAG00000017486) #20	ENSOJAG00000017856 #21	nog2 (ENSOJAG00000017884) #22	ntn2 (ENSOJAG00000017890) #23	ENSOJAG00000017916 #24	TBC1D24 (ENSOJAG00000017948) #25	ATP6V0C (ENSOJAG00000017966) #26	NUBP2 (ENSOJAG00000018016) #27	ENSOJAG00000018094 #28	ENSOJAG00000018108 #29	ENSOJAG00000018137 #30	ablim1b (ENSOJAG00000018215) #31	MPRIP (ENSOJAG00000018315) #32	ENSOJAG00000018544 #34	crp2 (ENSOJAG00000018563) #35	stub1 (ENSOJAG00000018591) #36	metrn (ENSOJAG00000018607) #37	IFT140 (ENSOJAG00000018626)
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00940000153417.A
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000030276	ENSORLG00000006976 #9	ENSORLG00000023038 #10	mybpc2b (ENSORLG00000007015) #11	ENSORLG00000007037 #12	ENSORLG00000029384 #13	ENSORLG00000007051 #14	ENSORLG00000007066 #15	cog7 (ENSORLG00000007096) #16	MSS51 (ENSORLG00000023306) #18	ENSORLG00000007099 #17	ENSORLG00000007112 #19	CAPN15 (ENSORLG00000007128) #20	ENSORLG00000007139 #21	ENSORLG00000029249	nog2 (ENSORLG00000007149) #22	ntn2 (ENSORLG00000007171) #23	ENSORLG00000007176 #24	TBC1D24 (ENSORLG00000007193) #25	ATP6V0C (ENSORLG00000007201) #26	nubp2 (ENSORLG00000007228) #27	ENSORLG00000007244 #28	ENSORLG00000030257 #29	ENSORLG00000007252 #30	ENSORLG00000007293 #31	MPRIP (ENSORLG00000007330) #32	ENSORLG00000007335 #34	crp2 (ENSORLG00000007351) #35	stub1 (ENSORLG00000007370) #36	metrn (ENSORLG00000027097) #37	IFT140 (ENSORLG00000007425)
Chinese medaka	MODERN SPECIES	1099	ENSOSIG00000009683	PPFIA3 (ENSOSIG00000009695) #7	ENSOSIG00000010010 #8	ENSOSIG00000010018 #9	ENSOSIG00000007147 #10	mybpc2b (ENSOSIG00000007149) #11	ENSOSIG00000007574 #12	LRRC4B (ENSOSIG00000007578) #13	ENSOSIG00000007579 #14	USP31 (ENSOSIG00000007584) #15	cog7 (ENSOSIG00000007590) #16	MSS51 (ENSOSIG00000007594) #18	MSS51 (ENSOSIG00000007596) #19	CAPN15 (ENSOSIG00000007603) #20	ENSOSIG00000007619 #21	nog2 (ENSOSIG00000007632) #22	ntn2 (ENSOSIG00000007636) #23	ENSOSIG00000007641 #24	TBC1D24 (ENSOSIG00000007647) #25	ATP6V0C (ENSOSIG00000007650) #26	nubp2 (ENSOSIG00000007693) #27	ENSOSIG00000007717 #28	ENSOSIG00000007718 #30	ABLIM1 (ENSOSIG00000007729) #31	MPRIP (ENSOSIG00000007794) #32	ENSOSIG00000008037 #34	crp2 (ENSOSIG00000008041) #35	stub1 (ENSOSIG00000008048) #36	metrn (ENSOSIG00000008052) #37	IFT140 (ENSOSIG00000008058)	tmem204 (ENSOSIG00000008065)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT01090000260249	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00940000161121 #8	ENSGT00930000151196.a.b ##10	ENSGT00930000151196.a.a.c #9	ENSGT00930000151196.a.a.d #10	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000164220.g.a	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37	ENSGT00390000013678	ENSGT00390000015528
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000009010 ##7	ENSAPEG00000008984 #8	ENSAPEG00000008949 ##10	ENSAPEG00000008935 #9	ENSAPEG00000008916 #10	mybpc2b (ENSAPEG00000008844) #11	ENSAPEG00000008753 #12	LRRC4B (ENSAPEG00000008706) #13	ENSAPEG00000008692	ENSAPEG00000008684 #14	cog7 (ENSAPEG00000008589) #16	ENSAPEG00000008576 #17	MSS51 (ENSAPEG00000008557) #18	MSS51 (ENSAPEG00000008549) #19	CAPN15 (ENSAPEG00000008463) #20	nog2 (ENSAPEG00000008436) #22	ntn2 (ENSAPEG00000008233) #23	ENSAPEG00000008139 #24	TBC1D24 (ENSAPEG00000008117) #25	ATP6V0C (ENSAPEG00000008089) #26	nubp2 (ENSAPEG00000008059) #27	ENSAPEG00000008043 #28	ENSAPEG00000008013 #30	ablim1b (ENSAPEG00000007990) #31	MPRIP (ENSAPEG00000007906) #32	ENSAPEG00000007856 #33	PRR35 (ENSAPEG00000007846) #34	crp2 (ENSAPEG00000007829) #35	stub1 (ENSAPEG00000007820) #36	metrn (ENSAPEG00000007805) #37	ENSAPEG00000007770
Clown anemonefish	MODERN SPECIES	3327								ENSAOCG00000011267	USP31 (ENSAOCG00000011035) #15	cog7 (ENSAOCG00000000697) #16	ENSAOCG00000010969 #17	MSS51 (ENSAOCG00000010961) #18	MSS51 (ENSAOCG00000010937) #19	CAPN15 (ENSAOCG00000010925) #20	ENSAOCG00000000677	nog2 (ENSAOCG00000010860) #22	ntn2 (ENSAOCG00000010850) #23	ENSAOCG00000010825 #24	TBC1D24 (ENSAOCG00000010740) #25	ATP6V0C (ENSAOCG00000010714) #26	nubp2 (ENSAOCG00000010697) #27	ENSAOCG00000010663 #28	ENSAOCG00000010622 #30	ablim1b (ENSAOCG00000010569) #31	MPRIP (ENSAOCG00000000660) #32	ENSAOCG00000002101	PRR35 (ENSAOCG00000002402) #34	RGS6 (ENSAOCG00000010330)	SIPA1L1 (ENSAOCG00000002118)	GPX2 (ENSAOCG00000010201)	RAB15 (ENSAOCG00000002532)
Spiny chromis	MODERN SPECIES	46	PPFIA3 (ENSAPOG00000019157) #7	ENSAPOG00000000528 #8	ENSAPOG00000018970 #9	mybpc2b (ENSAPOG00000018952) #11	ENSAPOG00000018857 #12	LRRC4B (ENSAPOG00000018853) #13	ENSAPOG00000018839	ENSAPOG00000018816 #14	USP31 (ENSAPOG00000018799) #15	cog7 (ENSAPOG00000018792) #16	ENSAPOG00000018704 #17	MSS51 (ENSAPOG00000018693) #18	MSS51 (ENSAPOG00000018663) #19	CAPN15 (ENSAPOG00000018650) #20	ENSAPOG00000018574 #21	nog2 (ENSAPOG00000018550) #22	ntn2 (ENSAPOG00000000936) #23	ENSAPOG00000018504 #24	TBC1D24 (ENSAPOG00000018494) #25	ATP6V0C (ENSAPOG00000018472) #26	nubp2 (ENSAPOG00000018445) #27	ENSAPOG00000018403 #28	ENSAPOG00000018359 #29	ENSAPOG00000000501 #30	MPRIP (ENSAPOG00000018301) #32
Bicolor damselfish	MODERN SPECIES	1472															ENSSPAG00000013593 #21	nog2 (ENSSPAG00000013611) #22	ntn2 (ENSSPAG00000013620) #23	ENSSPAG00000013631 #24	TBC1D24 (ENSSPAG00000013703) #25	ATP6V0C (ENSSPAG00000013734) #26	nubp2 (ENSSPAG00000013743) #27
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198 #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00930000151045.f #36	ENSGT00390000001390.b #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d #30	ENSGT00940000165198.c #30	ENSGT00950000182850.a.a.a #31	ENSGT01090000260189	ENSGT00940000155286.m.a #32	ENSGT00530000063870.b #34	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00990000204060
Haplochromini	ANCESTRAL SPECIES	17	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000179726	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d.a #30	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #37	ENSGT00930000151045.f #36	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000179726	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d.a #30	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #37	ENSGT00930000151045.f #36	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT01050000244900.a.b.f.b #7	ENSGT00940000161121 #8	ENSGT00930000151196.a.a.c #9	ENSGT00940000160092.A #11	ENSGT00940000161433 #12	ENSGT00940000160261.h #13	ENSGT00940000154768.B #14	ENSGT00940000156355.n.b #15	ENSGT00390000001260 #16	ENSGT00950000182933.B.a.a #17	ENSGT00940000153820.b.b.b #18	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000179726	ENSGT00940000163984.B #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a #24	ENSGT00410000025739.c.a #25	ENSGT00550000074873.ob.a.b.b #26	ENSGT00950000183193.A.c.b #27	ENSGT01030000234629.E.a.a #28	ENSGT00530000063937.b #29	ENSGT00940000165198.d.a #30	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #37	ENSGT00930000151045.f #36	ENSGT01100000263515.a.b.a.b.a.h #35	ENSGT00530000063870.b #34
Eastern happy	MODERN SPECIES	20	becn1 (ENSACLG00000009324)	ENSACLG00000009344	itgb3b (ENSACLG00000009367)	mybpc2b (ENSACLG00000009667) #11	ENSACLG00000009757 #12	LRRC4B (ENSACLG00000009772) #13	ENSACLG00000009773 #14	USP31 (ENSACLG00000009781) #15	cog7 (ENSACLG00000009797) #16	ENSACLG00000009806 #17	MSS51 (ENSACLG00000009817) #18	ENSACLG00000009826 #19	CAPN15 (ENSACLG00000009847) #20	ENSACLG00000010365 #21	ENSACLG00000010395	nog2 (ENSACLG00000010400) #22	ntn2 (ENSACLG00000010413) #23	ENSACLG00000010422 #24	TBC1D24 (ENSACLG00000010489) #25	ATP6V0C (ENSACLG00000010503) #26	nubp2 (ENSACLG00000010518) #27	ENSACLG00000010555 #28	ENSACLG00000010570 #29	ENSACLG00000010627 #30	IFT140 (ENSACLG00000010766)	tmem204 (ENSACLG00000011031)	ENSACLG00000011056	metrn (ENSACLG00000011147) #37	stub1 (ENSACLG00000011159) #36	crp2 (ENSACLG00000011181) #35	ENSACLG00000011190 #34
Zebra mbuna	MODERN SPECIES	1111	PPFIA3 (ENSMZEG00005012226) #7	ENSMZEG00005012141 #8	ENSMZEG00005012122 #9	mybpc2b (ENSMZEG00005011992) #11	ENSMZEG00005011951 #12	LRRC4B (ENSMZEG00005011944) #13	ENSMZEG00005011939 #14	USP31 (ENSMZEG00005011921) #15	cog7 (ENSMZEG00005011883) #16	ENSMZEG00005011875 #17	MSS51 (ENSMZEG00005011864) #18	ENSMZEG00005011857 #19	CAPN15 (ENSMZEG00005011822) #20	ENSMZEG00005011807	ENSMZEG00005011797 #21	nog2 (ENSMZEG00005011791) #22	ntn2 (ENSMZEG00005011774) #23	ENSMZEG00005011740 #24	TBC1D24 (ENSMZEG00005011724) #25	ATP6V0C (ENSMZEG00005011714) #26	nubp2 (ENSMZEG00005011700) #27	ENSMZEG00005011678 #28	ENSMZEG00005011684 #29	ENSMZEG00005011652 #30	ENSMZEG00005011647	ENSMZEG00005011634	ENSMZEG00005011619	WDR90 (ENSMZEG00005011589)	h1-0 (ENSMZEG00005011567)	rhot2 (ENSMZEG00005011542)	rhbdl1 (ENSMZEG00005011521)
P. nyererei	MODERN SPECIES	518	ENSPNYG00000013656	ENSPNYG00000013628	PPFIA3 (ENSPNYG00000013576) #7	ENSPNYG00000013458 #8	ENSPNYG00000013434 #9	mybpc2b (ENSPNYG00000013287) #11	ENSPNYG00000013206 #12	LRRC4B (ENSPNYG00000013161) #13	ENSPNYG00000013141 #14	USP31 (ENSPNYG00000013096) #15	cog7 (ENSPNYG00000013050) #16	ENSPNYG00000013031 #17	MSS51 (ENSPNYG00000013015) #18	MSS51 (ENSPNYG00000012997) #19	CAPN15 (ENSPNYG00000012944) #20	nog2 (ENSPNYG00000012917) #22	ntn2 (ENSPNYG00000012852) #23	ENSPNYG00000012782 #24	TBC1D24 (ENSPNYG00000012761) #25	ATP6V0C (ENSPNYG00000012737) #26	nubp2 (ENSPNYG00000012702) #27	ENSPNYG00000012679 #28	ENSPNYG00000012607 #29	ENSPNYG00000012564 #30
Burton s mouthbrooder	MODERN SPECIES	457	PPFIA3 (ENSHBUG00000018291) #7	ENSHBUG00000000863 #8	ENSHBUG00000018059 #9	mybpc2b (ENSHBUG00000018037) #11	ENSHBUG00000017849 #12	LRRC4B (ENSHBUG00000017836) #13	ENSHBUG00000017827 #14	USP31 (ENSHBUG00000017808) #15	cog7 (ENSHBUG00000017783) #16	ENSHBUG00000017688 #17	MSS51 (ENSHBUG00000017668) #18	MSS51 (ENSHBUG00000017653) #19	CAPN15 (ENSHBUG00000017628) #20	ENSHBUG00000017544 #21	ENSHBUG00000017498	nog2 (ENSHBUG00000017486) #22	ntn2 (ENSHBUG00000017474) #23	ENSHBUG00000017459 #24	TBC1D24 (ENSHBUG00000017438) #25	ATP6V0C (ENSHBUG00000017412) #26	nubp2 (ENSHBUG00000017399) #27	ENSHBUG00000017363 #28	ENSHBUG00000017355 #29	ENSHBUG00000017342 #30	ENSHBUG00000017303 #30	ABLIM1 (ENSHBUG00000017260) #31	ENSHBUG00000017239
Lyretail cichlid	MODERN SPECIES	499	pigp (ENSNBRG00000011687)	ENSNBRG00000011673	ENSNBRG00000011654	ENSNBRG00000011643	mybpc2b (ENSNBRG00000011543) #11	ENSNBRG00000011431 #12	LRRC4B (ENSNBRG00000011379) #13	ENSNBRG00000011361 #14	USP31 (ENSNBRG00000011312) #15	cog7 (ENSNBRG00000011267) #16	ENSNBRG00000011255 #17	MSS51 (ENSNBRG00000011221) #18	ENSNBRG00000011209 #19	CAPN15 (ENSNBRG00000011154) #20	ENSNBRG00000011132	nog2 (ENSNBRG00000011119) #22	ntn2 (ENSNBRG00000011103) #23	ENSNBRG00000011033 #24	TBC1D24 (ENSNBRG00000010990) #25	ATP6V0C (ENSNBRG00000010977) #26	nubp2 (ENSNBRG00000010955) #27	ENSNBRG00000010927 #28	ENSNBRG00000010896 #29
Nile tilapia	MODERN SPECIES	20	PPFIA3 (ENSONIG00000020046) #7	ENSONIG00000030987	ENSONIG00000020044 #9	ENSONIG00000031861	mybpc2b (ENSONIG00000020041) #11	ENSONIG00000020039 #12	LRRC4B (ENSONIG00000020038) #13	ENSONIG00000040988 #14	USP31 (ENSONIG00000020034) #15	cog7 (ENSONIG00000020033) #16	ENSONIG00000033430	MSS51 (ENSONIG00000020032) #18	MSS51 (ENSONIG00000020031) #19	CAPN15 (ENSONIG00000020030) #20	ENSONIG00000020029 #21	nog2 (ENSONIG00000021210) #22	ntn2 (ENSONIG00000020028) #23	ENSONIG00000020027 #24	TBC1D24 (ENSONIG00000020026) #25	ATP6V0C (ENSONIG00000020025) #26	nubp2 (ENSONIG00000020024) #27	ENSONIG00000020023 #28	ENSONIG00000020022 #29	ENSONIG00000020021 #30	ABLIM1 (ENSONIG00000020020) #31	MPRIP (ENSONIG00000020019) #32	ENSONIG00000029887 #34	crp2 (ENSONIG00000038131) #35	stub1 (ENSONIG00000042182) #36	metrn (ENSONIG00000020015) #37	RAB11FIP3 (ENSONIG00000020009)
Midas cichlid	MODERN SPECIES	194						mybpc2b (ENSACIG00000007807) #11	ENSACIG00000007755 #12	LRRC4B (ENSACIG00000007734) #13	ENSACIG00000007721 #14	USP31 (ENSACIG00000007685) #15	cog7 (ENSACIG00000007639) #16	ENSACIG00000007632 #17	MSS51 (ENSACIG00000007618) #18	MSS51 (ENSACIG00000007594) #19	CAPN15 (ENSACIG00000007568) #20	nog2 (ENSACIG00000007558) #22	ntn2 (ENSACIG00000007431) #23	ENSACIG00000007364 #24	TBC1D24 (ENSACIG00000007348) #25	ATP6V0C (ENSACIG00000007338) #26	nubp2 (ENSACIG00000007318) #27	ENSACIG00000007278 #28	ENSACIG00000007253 #29	ENSACIG00000007227 #30	ablim1b (ENSACIG00000007205) #31	ENSACIG00000007193	ENSACIG00000007148 #32	ENSACIG00000007133 #34	crp2 (ENSACIG00000007113) #35	stub1 (ENSACIG00000007066) #36	metrn (ENSACIG00000007044) #37