Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	297	ENSGT00390000004566.l	ENSGT00940000154944.u	ENSGT00390000006695	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a.b	ENSGT00940000155286.m.a.c	ENSGT00940000165198	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a.n	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.c	ENSGT00940000158312.e.g	ENSGT00940000163984.B.c	ENSGT00390000006009.a.a.b.b.d #22	ENSGT00940000153882.a.b.b.a.e #23	ENSGT00940000158125.a.c #24	ENSGT00940000163157.a.e.a #25	ENSGT00940000159110.a.e.c #26	ENSGT00940000153561.b.a.b.a.b.w.a ##29	ENSGT00950000182973.b.b.d.b #30	ENSGT00940000160261.h.c #31	ENSGT00940000160092.A.g #32	ENSGT00930000151196.a.a.b #33	ENSGT01090000260033.a.a.a.a.b.a.a.b.b.b.a.b ##34	ENSGT01030000234589.h.c.b.a.b ##35	ENSGT01090000260033.a.a.a.a.b.a.a.b.b.b.a.a ##34	ENSGT00940000161121.c	ENSGT01100000263515.a.b.a.b.a.h.b.b.b.a	ENSGT01100000263515.a.b.a.b.a.h.a.b
Cyprininae_a	ANCESTRAL SPECIES	328	ENSGT00940000164148.a.b.b	ENSGT00390000004566.l	ENSGT00940000154944.u	ENSGT00390000006695	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a.b	ENSGT00940000155286.m.a.c	ENSGT00940000165198	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a.n	ENSGT00940000153820.b.b.c	ENSGT00940000158312.e.g	ENSGT00940000163984.B.c	ENSGT00390000006009.a.a.b.b.d #22	ENSGT00940000153882.a.b.b.a.e #23	ENSGT00940000158125.a.c #24	ENSGT00940000163157.a.e.a #25	ENSGT00940000159110.a.e.c #26	ENSGT00990000206277 #27	ENSGT00940000153561.b.a.b.a.b.x #29	ENSGT00950000182973.b.b.d.b #30	ENSGT00940000160261.h.c #31	ENSGT00940000160092.A.g #32	ENSGT00930000151196.a.a.b #33
Golden-line barbel	MODERN SPECIES	471																nog2 (ENSSGRG00000033476) #22	ntn2 (ENSSGRG00000033475) #23	ENSSGRG00000033474 #24	slc6a16b (ENSSGRG00000033471) #25	SLC17A7 (ENSSGRG00000033470) #26	ENSSGRG00000033469 #27	ENSSGRG00000033468 #28	ENSSGRG00000033465 #29	zgc:91999 (ENSSGRG00000033462) #30	LRRC4B (ENSSGRG00000033461) #31	mybpc2b (ENSSGRG00000031552) #32	ENSSGRG00000031507 #33	ENSSGRG00000031506 #34	ENSSGRG00000031505 #35	ENSSGRG00000031502 #36	ENSSGRG00000031501 #37
Common carp reference	MODERN SPECIES	40	dcun1d3 (ENSCCRG00000038764)	lyrm1 (ENSCCRG00000031835)	DNAH3 (ENSCCRG00000013966)	ENSCCRG00000069581	ENSCCRG00000006790	ENSCCRG00000027861	ENSCCRG00000027867	ENSCCRG00000027870	atp6v0cb (ENSCCRG00000021823)	ENSCCRG00000027878	ENSCCRG00000072839	ENSCCRG00000059977	ENSCCRG00000027931	ENSCCRG00000013894	ENSCCRG00000020673	nog2 (ENSCCRG00000063826) #22	ntn2 (ENSCCRG00000020665) #23	ENSCCRG00000067153 #24	slc6a16b (ENSCCRG00000052572) #25	ENSCCRG00000076957 #26	ENSCCRG00000041478 #27	ENSCCRG00000048349 #29	ENSCCRG00000057722 ##29	ENSCCRG00000047839 #30	ENSCCRG00000053963 #31	mybpc2b (ENSCCRG00000047854) #32	ENSCCRG00000066479 #33	ENSCCRG00000013446 ##34	ENSCCRG00000055771 ##36	ENSCCRG00000069874 ##35	ENSCCRG00000059490 ##36
Cyprininae	ANCESTRAL SPECIES	455			ENSGT00930000151045.f.e.a	ENSGT00950000183213.a.a.b.a	ENSGT00530000063694.a.j	ENSGT00940000164148.a.b.b	ENSGT00390000004566.k	ENSGT00940000154944.v	ENSGT01030000234586.A.a.a.a.a	ENSGT00940000155286.m.a.d	ENSGT00950000183193.A.c.b	ENSGT00410000025739.c.a.m	ENSGT00940000153820.b.b.d	ENSGT00940000158312.e.h	ENSGT00940000163984.B.d	ENSGT00390000006009.a.a.b.b.c ##22	ENSGT00940000153882.a.b.b.a.f ##23	ENSGT00940000158125.a.d ##24	ENSGT00940000163157.a.e.b ##25	ENSGT00940000159110.a.e.d ##26	ENSGT00990000206277 #27	ENSGT01050000244808.D	ENSGT00940000153561.b.a.b.a.b.x #29	ENSGT00950000182973.b.b.d.a ##30	ENSGT00940000160261.h.d ##31	ENSGT00940000160092.A.h ##32	ENSGT00930000151196.a.a.a ##33
Cyprininae_a	ANCESTRAL SPECIES	378	ENSGT00930000151045.f.e.a	ENSGT00990000204060	ENSGT00950000183213.a.a.b.a	ENSGT00530000063694.a.j	ENSGT00940000164148.a.b.a	ENSGT00390000004566.k	ENSGT00940000154944.v	ENSGT01030000234586.A.a.a.a.a	ENSGT00940000155286.m.a.d	ENSGT00950000183193.A.c.b	ENSGT00410000025739.c.a.m	ENSGT00950000182933.B.a.a	ENSGT00940000153820.b.b.d	ENSGT00940000158312.e.h	ENSGT00940000163071	ENSGT00390000006009.a.a.b.b.c ##22	ENSGT00940000153882.a.b.b.a.f ##23	ENSGT00940000158125.a.d ##24	ENSGT00940000163157.a.e.b ##25	ENSGT00940000159110.a.e.d ##26	ENSGT01050000244808.D	ENSGT00940000153561.b.a.b.a.b.w.b ##29	ENSGT00950000182973.b.b.d.a ##30	ENSGT00940000160261.h.d ##31	ENSGT00940000160092.A.h ##32	ENSGT00930000151196.a.a.a ##33
Golden-line barbel	MODERN SPECIES	574	ENSSGRG00000022075	cox6b1 (ENSSGRG00000022077)	cox6b1 (ENSSGRG00000022080)	KATNIP (ENSSGRG00000022082)	dcun1d3 (ENSSGRG00000022084)	ENSSGRG00000022086	MPRIP (ENSSGRG00000022095)	ENSSGRG00000022796	ENSSGRG00000022798	nubp2 (ENSSGRG00000022801)	TBC1D24 (ENSSGRG00000022808)	ENSSGRG00000022822	MSS51 (ENSSGRG00000022823)	CAPN15 (ENSSGRG00000022827)	ENSSGRG00000022902	nog2 (ENSSGRG00000022904) ##22	ntn2 (ENSSGRG00000022905) ##23	ENSSGRG00000022906 ##24	slc6a16b (ENSSGRG00000022911) ##25	SLC17A7 (ENSSGRG00000022922) ##26	ENSSGRG00000023267 ##27	ENSSGRG00000023270 ##29	zgc:91999 (ENSSGRG00000023273) ##30	LRRC4B (ENSSGRG00000023277) ##31	ENSSGRG00000023278 ##33	ENSSGRG00000023285	crp2 (ENSSGRG00000023286)	ENSSGRG00000023287	ENSSGRG00000023289	metrn (ENSSGRG00000023290)	ENSSGRG00000023291
Goldfish	MODERN SPECIES	1513	ENSCARG00000032193 ##34	stub1 (ENSCARG00000032210)	luc7l (ENSCARG00000032229)	ENSCARG00000032264	cox6b1 (ENSCARG00000032279)	ENSCARG00000032291	dcun1d3 (ENSCARG00000032366)	ENSCARG00000032382	MPRIP (ENSCARG00000032419)	nubp2 (ENSCARG00000033001)	atp6v0cb (ENSCARG00000033131)	TBC1D24 (ENSCARG00000033173)	ENSCARG00000033250	CAPN15 (ENSCARG00000033313)	ENSCARG00000034297	nog2 (ENSCARG00000034345) ##22	ntn2 (ENSCARG00000034362) ##23	ENSCARG00000034395 ##24	slc6a16b (ENSCARG00000034423) ##25	SLC17A7 (ENSCARG00000034516) ##26	ENSCARG00000034619	LRRC4B (ENSCARG00000034638) ##31	mybpc2b (ENSCARG00000034794) ##32	ENSCARG00000040432 ##34	ENSCARG00000040441	ENSCARG00000040501 ##34	ENSCARG00000040970	ENSCARG00000040977	ENSCARG00000041013	crp2 (ENSCARG00000041046)	ENSCARG00000041056