Vertebrata	ANCESTRAL SPECIES	246														ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22
Gnathostomata	ANCESTRAL SPECIES	128										ENSGT00940000155289.C	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT01020000230401.b.b	ENSGT00940000155364	ENSGT00940000155577	ENSGT00940000157834	ENSGT00390000015189	ENSGT00940000158383	ENSGT00390000012037
Euteleostomi	ANCESTRAL SPECIES	273									ENSGT00390000017704	ENSGT00730000111029	ENSGT00940000155289.C	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00940000153417.A	ENSGT00390000015528
Actinopterygii	ANCESTRAL SPECIES	411															ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00940000153417.A	ENSGT00390000015528
Neopterygii	ANCESTRAL SPECIES	411															ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873
Osteoglossocephalai	ANCESTRAL SPECIES	154	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00390000006698	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00990000204060	ENSGT00930000151045.e	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.b ##15	ENSGT00390000008964	ENSGT00940000161283	ENSGT00940000153496.a.a	ENSGT00940000165198 #14	ENSGT00390000007652	ENSGT00390000003337	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a
Clupeocephala	ANCESTRAL SPECIES	6	ENSGT00440000033742.a.a	ENSGT00390000006698	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00930000151045.e	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	132										ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.d #19	ENSGT00940000153820.b.b.c ##19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873.nb.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT01030000234586.A.a.a.a #12	ENSGT00940000154959	ENSGT00390000006695	ENSGT00940000154944 #11	ENSGT00390000004566 #10	ENSGT00940000164148.a.b #9	ENSGT00530000063694.a #7
Otophysi	ANCESTRAL SPECIES	112	ENSGT00940000154944 #11	ENSGT00390000006695	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a #12	ENSGT00940000155286.m.a #13	ENSGT00940000165198 #14	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a #15	ENSGT00950000183193.A.c.b #16	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a #17	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.c ##19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000158125.a #24	ENSGT00940000163157.a #25	ENSGT00940000159110.a.e #26	ENSGT00990000206277 #27	ENSGT00940000153561.b.a.b.a.b #28	ENSGT00950000182973.b.b.d #29	ENSGT00940000160261.h #30	ENSGT00940000160092.A	ENSGT00930000151196.a.a #31	ENSGT00940000161121	ENSGT01050000244900.a.b.f.b
Cyprinoidei	ANCESTRAL SPECIES	90	ENSGT00390000006695	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a #12	ENSGT00940000155286.m.a #13	ENSGT00940000165198 #14	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a #15	ENSGT00950000183193.A.c.b #16	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a #17	ENSGT00940000153820.b.b.c ##19	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.d #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000158125.a #24	ENSGT00940000163157.a.e #25	ENSGT00940000159110.a.e #26	ENSGT00990000206277 #27	ENSGT00940000153561.b.a.b.a.b #28	ENSGT00950000182973.b.b.d #29	ENSGT00940000160261.h #30	ENSGT00940000160092.A	ENSGT00930000151196.a.a #31
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	455			ENSGT00930000151045.f.e.a	ENSGT00950000183213.a.a.b.a	ENSGT00530000063694.a.j #7	ENSGT00940000164148.a.b.b #9	ENSGT00390000004566.k #10	ENSGT00940000154944.v #11	ENSGT01030000234586.A.a.a.a.a #12	ENSGT00940000155286.m.a.d #13	ENSGT00950000183193.A.c.b #16	ENSGT00410000025739.c.a.m #17	ENSGT00940000153820.b.b.d #19	ENSGT00940000158312.e.h #20	ENSGT00940000163984.B.d	ENSGT00390000006009.a.a.b.b.c #22	ENSGT00940000153882.a.b.b.a.f #23	ENSGT00940000158125.a.d ##24	ENSGT00940000163157.a.e.b #25	ENSGT00940000159110.a.e.d #26	ENSGT00990000206277 #27	ENSGT01050000244808.D	ENSGT00940000153561.b.a.b.a.b.x #28	ENSGT00950000182973.b.b.d.a #29	ENSGT00940000160261.h.d #30	ENSGT00940000160092.A.h	ENSGT00930000151196.a.a.a #31
Cyprininae_a	ANCESTRAL SPECIES	378	ENSGT00930000151045.f.e.a	ENSGT00990000204060	ENSGT00950000183213.a.a.b.a	ENSGT00530000063694.a.j #7	ENSGT00940000164148.a.b.a ##9	ENSGT00390000004566.k #10	ENSGT00940000154944.v #11	ENSGT01030000234586.A.a.a.a.a #12	ENSGT00940000155286.m.a.d #13	ENSGT00950000183193.A.c.b #16	ENSGT00410000025739.c.a.m #17	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.d #19	ENSGT00940000158312.e.h #20	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b.b.c #22	ENSGT00940000153882.a.b.b.a.f #23	ENSGT00940000158125.a.d ##24	ENSGT00940000163157.a.e.b #25	ENSGT00940000159110.a.e.d #26	ENSGT01050000244808.D	ENSGT00940000153561.b.a.b.a.b.w.b ##28	ENSGT00950000182973.b.b.d.a #29	ENSGT00940000160261.h.d #30	ENSGT00940000160092.A.h	ENSGT00930000151196.a.a.a #31
Golden-line barbel	MODERN SPECIES	574	ENSSGRG00000022075 #7	cox6b1 (ENSSGRG00000022077) #8	cox6b1 (ENSSGRG00000022080) #9	KATNIP (ENSSGRG00000022082) #10	dcun1d3 (ENSSGRG00000022084) #11	ENSSGRG00000022086 #12	MPRIP (ENSSGRG00000022095) #13	ENSSGRG00000022796 #14	ENSSGRG00000022798 #15	nubp2 (ENSSGRG00000022801) #16	TBC1D24 (ENSSGRG00000022808) #17	ENSSGRG00000022822 #18	MSS51 (ENSSGRG00000022823) #19	CAPN15 (ENSSGRG00000022827) #20	ENSSGRG00000022902 #21	nog2 (ENSSGRG00000022904) #22	ntn2 (ENSSGRG00000022905) #23	ENSSGRG00000022906 #24	slc6a16b (ENSSGRG00000022911) #25	SLC17A7 (ENSSGRG00000022922) #26	ENSSGRG00000023267 #27	ENSSGRG00000023270 #28	zgc:91999 (ENSSGRG00000023273) #29	LRRC4B (ENSSGRG00000023277) #30	ENSSGRG00000023278 #31	ENSSGRG00000023285 #32	crp2 (ENSSGRG00000023286) #33	ENSSGRG00000023287 #34	ENSSGRG00000023289 #35	metrn (ENSSGRG00000023290) #36	ENSSGRG00000023291 #37
Goldfish	MODERN SPECIES	1513	ENSCARG00000032193	stub1 (ENSCARG00000032210)	luc7l (ENSCARG00000032229)	ENSCARG00000032264 #7	cox6b1 (ENSCARG00000032279) #9	ENSCARG00000032291 #10	dcun1d3 (ENSCARG00000032366) #11	ENSCARG00000032382 #12	MPRIP (ENSCARG00000032419) #13	nubp2 (ENSCARG00000033001) #16	atp6v0cb (ENSCARG00000033131)	TBC1D24 (ENSCARG00000033173) #17	ENSCARG00000033250 #19	CAPN15 (ENSCARG00000033313) #20	ENSCARG00000034297	nog2 (ENSCARG00000034345) #22	ntn2 (ENSCARG00000034362) #23	ENSCARG00000034395 ##24	slc6a16b (ENSCARG00000034423) #25	SLC17A7 (ENSCARG00000034516) #26	ENSCARG00000034619	LRRC4B (ENSCARG00000034638) #30	mybpc2b (ENSCARG00000034794)	ENSCARG00000040432	ENSCARG00000040441 ##34	ENSCARG00000040501	ENSCARG00000040970	ENSCARG00000040977	ENSCARG00000041013 #32	crp2 (ENSCARG00000041046) #33	ENSCARG00000041056 #32
Cyprininae	ANCESTRAL SPECIES	297	ENSGT00390000004566.l ##10	ENSGT00940000154944.u ##11	ENSGT00390000006695	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a.b ##12	ENSGT00940000155286.m.a.c ##13	ENSGT00940000165198 #14	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a #15	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a.n ##17	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.c ##19	ENSGT00940000158312.e.g ##20	ENSGT00940000163984.B.c	ENSGT00390000006009.a.a.b.b.d ##22	ENSGT00940000153882.a.b.b.a.e ##23	ENSGT00940000158125.a.c #24	ENSGT00940000163157.a.e.a ##25	ENSGT00940000159110.a.e.c ##26	ENSGT00940000153561.b.a.b.a.b.w.a ##28	ENSGT00950000182973.b.b.d.b ##29	ENSGT00940000160261.h.c ##30	ENSGT00940000160092.A.g	ENSGT00930000151196.a.a.b ##31	ENSGT01090000260033.a.a.a.a.b.a.a.b.b.b.a.b	ENSGT01030000234589.h.c.b.a.b	ENSGT01090000260033.a.a.a.a.b.a.a.b.b.b.a.a	ENSGT00940000161121.c	ENSGT01100000263515.a.b.a.b.a.h.b.b.b.a ##34	ENSGT01100000263515.a.b.a.b.a.h.a.b ##34
Cyprininae_a	ANCESTRAL SPECIES	328	ENSGT00940000164148.a.b.b #9	ENSGT00390000004566.l ##10	ENSGT00940000154944.u ##11	ENSGT00390000006695	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a.b ##12	ENSGT00940000155286.m.a.c ##13	ENSGT00940000165198 #14	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a #15	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a.n ##17	ENSGT00940000153820.b.b.c ##19	ENSGT00940000158312.e.g ##20	ENSGT00940000163984.B.c	ENSGT00390000006009.a.a.b.b.d ##22	ENSGT00940000153882.a.b.b.a.e ##23	ENSGT00940000158125.a.c #24	ENSGT00940000163157.a.e.a ##25	ENSGT00940000159110.a.e.c ##26	ENSGT00990000206277 #27	ENSGT00940000153561.b.a.b.a.b.x #28	ENSGT00950000182973.b.b.d.b ##29	ENSGT00940000160261.h.c ##30	ENSGT00940000160092.A.g	ENSGT00930000151196.a.a.b ##31
Golden-line barbel	MODERN SPECIES	471																nog2 (ENSSGRG00000033476) ##22	ntn2 (ENSSGRG00000033475) ##23	ENSSGRG00000033474 ##24	slc6a16b (ENSSGRG00000033471) ##25	SLC17A7 (ENSSGRG00000033470) ##26	ENSSGRG00000033469 ##27	ENSSGRG00000033468 ##27	ENSSGRG00000033465 ##28	zgc:91999 (ENSSGRG00000033462) ##29	LRRC4B (ENSSGRG00000033461) ##30	mybpc2b (ENSSGRG00000031552)	ENSSGRG00000031507 ##31	ENSSGRG00000031506	ENSSGRG00000031505	ENSSGRG00000031502	ENSSGRG00000031501
Common carp reference	MODERN SPECIES	40	dcun1d3 (ENSCCRG00000038764) ##11	lyrm1 (ENSCCRG00000031835)	DNAH3 (ENSCCRG00000013966)	ENSCCRG00000069581 ##12	ENSCCRG00000006790 ##13	ENSCCRG00000027861 #14	ENSCCRG00000027867	ENSCCRG00000027870 #15	atp6v0cb (ENSCCRG00000021823)	ENSCCRG00000027878 ##17	ENSCCRG00000072839 #18	ENSCCRG00000059977 #18	ENSCCRG00000027931 ##19	ENSCCRG00000013894 ##20	ENSCCRG00000020673	nog2 (ENSCCRG00000063826) ##22	ntn2 (ENSCCRG00000020665) ##23	ENSCCRG00000067153 #24	slc6a16b (ENSCCRG00000052572) ##25	ENSCCRG00000076957 ##26	ENSCCRG00000041478 #27	ENSCCRG00000048349 #28	ENSCCRG00000057722 ##28	ENSCCRG00000047839 ##29	ENSCCRG00000053963 ##30	mybpc2b (ENSCCRG00000047854)	ENSCCRG00000066479 ##31	ENSCCRG00000013446	ENSCCRG00000055771	ENSCCRG00000069874	ENSCCRG00000059490
Zebrafish	MODERN SPECIES	16	ENSDARG00000094441 #10	dcun1d3 (ENSDARG00000011493) #11	lyrm1 (ENSDARG00000026281)	DNAH3 (ENSDARG00000068468)	ENSDARG00000104965 #12	ENSDARG00000114766	ENSDARG00000105209 #13	ENSDARG00000070957 #14	ENSDARG00000077487 #15	nubp2 (ENSDARG00000055653) #16	atp6v0cb (ENSDARG00000036577)	TBC1D24 (ENSDARG00000069339) #17	ENSDARG00000015527 #18	ENSDARG00000075463 #19	CAPN15 (ENSDARG00000060600) #20	nog2 (ENSDARG00000043066) #22	ntn2 (ENSDARG00000076748) #23	ENSDARG00000003313 #24	ENSDARG00000087102	slc6a16b (ENSDARG00000102377) #25	SLC17A7 (ENSDARG00000090106) #26	zgc:154125 (ENSDARG00000071463)	ENSDARG00000097702	LRRC4B (ENSDARG00000014792) #30	mybpc2b (ENSDARG00000021265)	zgc:91999 (ENSDARG00000105001) #29	ENSDARG00000113944	ENSDARG00000117030	ENSDARG00000109863	ENSDARG00000113786	ENSDARG00000110046
Characiphysae	ANCESTRAL SPECIES	162	ENSGT00940000160421.g.b	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a #12	ENSGT00940000155286.m.a #13	ENSGT01090000260189.a	ENSGT00940000165198 #14	ENSGT00530000063937.b	ENSGT01030000234629.E.a.a #15	ENSGT00950000183193.A.c.b #16	ENSGT00550000074873.nb.a	ENSGT00410000025739.c.a #17	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.c.d ##19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000158125.a #24	ENSGT00940000163157.a #25	ENSGT00940000159110.a.e #26	ENSGT00990000206277 #27	ENSGT00940000153561.b.a.b.a.b #28	ENSGT00950000182973.b.b.d #29	ENSGT00940000160261.h #30	ENSGT00940000160092.A.f	ENSGT00930000151196.a.a #31	ENSGT00940000161121	ENSGT01050000244900.a.b.f.b
Channel catfish	MODERN SPECIES		ENSIPUG00000004393	fam234a (ENSIPUG00000004412) #7	luc7l (ENSIPUG00000004442)	stub1 (ENSIPUG00000004501)	ENSIPUG00000004543	ENSIPUG00000004554	ENSIPUG00000004581 #14	ENSIPUG00000004611	nubp2 (ENSIPUG00000004626) #16	atp6v0cb (ENSIPUG00000004647)	tbc1d24 (ENSIPUG00000004669) #17	MSS51 (ENSIPUG00000004676) ##19	MSS51 (ENSIPUG00000005413) ##19	capn15 (ENSIPUG00000005430) #20	ENSIPUG00000005482	nog2 (ENSIPUG00000005506) #22	NTN3 (ENSIPUG00000005515) #23	ENSIPUG00000005562	mybpc2b (ENSIPUG00000005584)	LRRC4B (ENSIPUG00000005616) #30	zgc:91999 (ENSIPUG00000005647) #29	ENSIPUG00000005657 #28	SLC17A7 (ENSIPUG00000005699) #26	slc6a16b (ENSIPUG00000005776) #25	ENSIPUG00000005797 #24
Characiphysae_b	ANCESTRAL SPECIES	271																ENSGT00390000006009.a.a.b.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000158125.a #24	ENSGT00940000163157.a #25	ENSGT00940000159110.a.e #26	ENSGT00990000206277 #27
Characoidei	ANCESTRAL SPECIES																	ENSGT00390000006009.a.a.b.b #22
Red-bellied piranha	MODERN SPECIES	1637																nog2 (ENSPNAG00000026946) #22	ENSPNAG00000026961
Electric eel	MODERN SPECIES	811																nog2 (ENSEEEG00000008729) #22	ENSEEEG00000008728	ntn2 (ENSEEEG00000008727) #23	slc6a16b (ENSEEEG00000008696) #25	SLC17A7 (ENSEEEG00000008693) #26	ENSEEEG00000008692 #27	ENSEEEG00000008691 ##28
Clupeiformes	ANCESTRAL SPECIES	297						ENSGT00950000182973.b.b.d #29	ENSGT00940000153561.b.a.b.a.b #28	ENSGT00990000206277 #27	ENSGT00940000159110.a.e #26	ENSGT00940000163157.a #25	ENSGT00940000158125.a #24	ENSGT00940000158312.e #20	ENSGT00940000153820.b.b.c ##19	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873.nb.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	325										SLC17A7 (ENSDCDG00000025083) #26	slc6a16b (ENSDCDG00000024861) #25	ENSDCDG00000024839 #24	CAPN15 (ENSDCDG00000024779) #20	ENSDCDG00000024770 ##19	ENSDCDG00000024762	nog2 (ENSDCDG00000024759) #22
Denticle herring	MODERN SPECIES	18	ENSDCDG00000004434	reep3a (ENSDCDG00000004427)	cyp26c1 (ENSDCDG00000004425)	slc22a15 (ENSDCDG00000004423)	kif11 (ENSDCDG00000004413)	rgs7a (ENSDCDG00000004075)	GREM2 (ENSDCDG00000004039)	ENSDCDG00000004038	CHRM3 (ENSDCDG00000004035)	SLC17A7 (ENSDCDG00000003229) #26	slc6a16b (ENSDCDG00000035350) #25	ENSDCDG00000035346 #24	CAPN15 (ENSDCDG00000035342) #20	MSS51 (ENSDCDG00000035339) ##19	ENSDCDG00000035335	nog2 (ENSDCDG00000035334) #22	ntn2 (ENSDCDG00000035333) #23	TBC1D24 (ENSDCDG00000035332) #17	ATP6V0C (ENSDCDG00000035329)	nubp2 (ENSDCDG00000035328) #16	ENSDCDG00000035323 #15	ENSDCDG00000035320	ENSDCDG00000035318	ENSDCDG00000035317	CCNJ (ENSDCDG00000035316)	BTAF1 (ENSDCDG00000035310)	cpeb3 (ENSDCDG00000035300)	marchf5 (ENSDCDG00000035295)	ide (ENSDCDG00000035226)	kmo (ENSDCDG00000035197)	opn3 (ENSDCDG00000035188)
Atlantic herring	MODERN SPECIES	15	kctd2 (ENSCHAG00000018804)	hexdc (ENSCHAG00000018841)	zgc:91999 (ENSCHAG00000002620) #29	ENSCHAG00000002804 ##28	ENSCHAG00000002934 #27	SLC17A7 (ENSCHAG00000003122) #26	slc6a16b (ENSCHAG00000006523) #25	ENSCHAG00000006848 #24	CAPN15 (ENSCHAG00000006926) #20	MSS51 (ENSCHAG00000007027) ##19	MSS51 (ENSCHAG00000007038) #19	ENSCHAG00000007054 #18	ENSCHAG00000007061 #18	ENSCHAG00000007092	ENSCHAG00000007120 #21	nog2 (ENSCHAG00000007131) #22	ntn2 (ENSCHAG00000007141) #23	TBC1D24 (ENSCHAG00000007165) #17	atp6v0cb (ENSCHAG00000007188)	nubp2 (ENSCHAG00000007232) #16	ENSCHAG00000007378 #15	ENSCHAG00000007385	ENSCHAG00000007416 #14	MPRIP (ENSCHAG00000007532) #13	ENSCHAG00000008168	ENSCHAG00000008337	ENSCHAG00000008381	decr2 (ENSCHAG00000008472)	rab11fip3 (ENSCHAG00000008586)	telo2 (ENSCHAG00000008719)	IFT140 (ENSCHAG00000009061)
Otomorpha	ANCESTRAL SPECIES	50											ENSGT00940000160286	ENSGT00390000002810	ENSGT00390000014771.b.a	ENSGT00390000015438	ENSGT00390000012605	ENSGT00390000006009.a.a.b.a ##22	ENSGT00940000156748	ENSGT00940000153909.a	ENSGT00390000007101.d.a	ENSGT00390000004452	ENSGT00390000018612.a.a	ENSGT00560000077365	ENSGT00940000155653.a	ENSGT00940000159110.a.f ##26	ENSGT00940000163157.b ##25	ENSGT00940000158125.b ##24	ENSGT00940000155286.m.b ##13	ENSGT01030000234586.A.a.a.b ##12	ENSGT00940000155685	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT01030000234535.A
Clupeiformes	ANCESTRAL SPECIES	74															ENSGT00390000012605	ENSGT00390000006009.a.a.b.a ##22	ENSGT00940000156748	ENSGT00940000153909.a	ENSGT00390000007101.d.a	ENSGT00390000004452	ENSGT00390000018612.a.a	ENSGT00560000077365	ENSGT00940000155653.a	ENSGT00940000159110.a.f ##26	ENSGT00940000163157.b ##25	ENSGT00940000158125.b ##24	ENSGT00940000155286.m.b ##13	ENSGT01030000234586.A.a.a.b ##12	ENSGT00940000155685	ENSGT01090000260005.a.a.a.b.a.a.b.b	ENSGT01030000234535.A
Atlantic herring	MODERN SPECIES		TSPAN10 (ENSCHAG00000027592)	pde6ga (ENSCHAG00000027597)	ccdc137 (ENSCHAG00000000545)	GPRC5C (ENSCHAG00000000571)	BTBD17 (ENSCHAG00000000592)	ENSCHAG00000000979	KCNJ2 (ENSCHAG00000001841) ##12	ENSCHAG00000001851	ENSCHAG00000001861	ENSCHAG00000001953	nme4 (ENSCHAG00000001969)	xpo6 (ENSCHAG00000002016)	antkmt (ENSCHAG00000002521)	JMJD8 (ENSCHAG00000002769)	amdhd2 (ENSCHAG00000002853)	ENSCHAG00000003657 ##22	tufm (ENSCHAG00000003695)	hspbp1 (ENSCHAG00000003794)	tmem86b (ENSCHAG00000003823)	aspdh (ENSCHAG00000003832)	gys1 (ENSCHAG00000003894)	pold1 (ENSCHAG00000004664)	zgc:55558 (ENSCHAG00000006201)	slc17a7a (ENSCHAG00000006294) ##26	ENSCHAG00000009745 ##25	eps8l1a (ENSCHAG00000009860) ##24	ENSCHAG00000009982 ##13	ENSCHAG00000010033 ##12	ENSCHAG00000010106	ENSCHAG00000010475	ENSCHAG00000010718
Denticle herring	MODERN SPECIES	289					ENSDCDG00000026730	slc25a19 (ENSDCDG00000026726)	helz (ENSDCDG00000026581)	CACNG1 (ENSDCDG00000026564)	cacng4b (ENSDCDG00000026563)	aimp2 (ENSDCDG00000026562)	pvalb8 (ENSDCDG00000026561)	pvalb4 (ENSDCDG00000026558)	pvalb1 (ENSDCDG00000026555)	lmtk2 (ENSDCDG00000026478)	amdhd2 (ENSDCDG00000026458)	ENSDCDG00000026455 ##22	tufm (ENSDCDG00000026450)	hspbp1 (ENSDCDG00000026448)	tmem86b (ENSDCDG00000026446)	aspdh (ENSDCDG00000026408)	gys1 (ENSDCDG00000026355)	pold1 (ENSDCDG00000026316)	zgc:55558 (ENSDCDG00000026304)	slc17a7a (ENSDCDG00000025986) ##26	eps8l1a (ENSDCDG00000025953) ##24	ENSDCDG00000025949 ##13	ENSDCDG00000025946 ##12	eftud2 (ENSDCDG00000025919)	GJC1 (ENSDCDG00000025915)	rex1bd (ENSDCDG00000025907)	NUP85 (ENSDCDG00000025138)
Otophysi	ANCESTRAL SPECIES	254	ENSGT00940000156555.i.b	ENSGT00940000155709.j	ENSGT00940000177272	ENSGT00940000162720.b.a.a.b	ENSGT00940000176898	ENSGT00940000156854.t.a.a	ENSGT00940000156854.t.b	ENSGT00730000111191	ENSGT00940000154744.a.a	ENSGT00940000168279	ENSGT00390000014620	ENSGT00940000153432.A.a.i	ENSGT00550000074902	ENSGT00390000015438	ENSGT00390000012605	ENSGT00390000006009.a.a.b.a ##22	ENSGT00940000156748	ENSGT00940000153909.a
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00390000004169	ENSGT00940000159039.a	ENSGT00940000157513	ENSGT00390000005666	ENSGT00390000004090.cd	ENSGT00940000155830.e.b	ENSGT00950000182849.B.c.a.b.b	ENSGT00390000008063	ENSGT01100000263497.E.a.a	ENSGT00390000006806	ENSGT00950000182933.B.a.b.a.i ##18	ENSGT00950000182933.B.a.b.a.j ##18	ENSGT00550000074902	ENSGT00390000015438	ENSGT00390000012605	ENSGT00390000006009.a.a.b.a ##22	ENSGT00940000156748	ENSGT00940000153909.a	ENSGT00940000158718.a.b	ENSGT00940000159979.a.a	ENSGT01030000234559.a.a.b.a.a.b	ENSGT00940000156719	ENSGT00390000006387	ENSGT00940000166067.a	ENSGT00940000168682	ENSGT00940000158116.a.b	ENSGT00940000165054.C	ENSGT00970000193546	ENSGT00940000158178.b.a	ENSGT00940000165438.a.a	ENSGT00940000164623.B
Cyprininae	ANCESTRAL SPECIES	216	ENSGT00390000004169	ENSGT00940000159039.a.c.a	ENSGT00940000157513.x.b	ENSGT00390000005666.k	ENSGT00390000004090.cd.a.a.a	ENSGT00940000155830.e.b.b	ENSGT00950000182849.B.c.a.b.b.a	ENSGT00390000008063.m	ENSGT01100000263497.E.a.a	ENSGT00390000006806.g.b	ENSGT00950000182933.B.a.b.a.i.b ##18	ENSGT00950000182933.B.a.b.a.j.a ##18	ENSGT00550000074902.e	ENSGT00390000015438	ENSGT00390000012605.b	ENSGT00390000006009.a.a.b.a ##22	ENSGT00940000156748.v	ENSGT00940000153909.a	ENSGT00940000158718.a.b.d	ENSGT00940000159979.a.a.f	ENSGT01030000234559.a.a.b.a.a.b.b	ENSGT00940000156719.t	ENSGT00390000006387.g.a	ENSGT00940000168682.a	ENSGT00940000158116.a.b	ENSGT00940000165054.C	ENSGT00940000158178.b.a.a	ENSGT00940000165438.a.a.a.b	ENSGT00940000164623.B.a	ENSGT00940000164108.a.a.f.a.b	ENSGT00940000158145.b.b
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000006009.a.a.b.a ##22
Golden-line barbel	MODERN SPECIES	5116																ENSSGRG00000004066 ##22
Goldfish	MODERN SPECIES	22	ccdc137 (ENSCARG00000024285)	pdgfab (ENSCARG00000024265)	prkar1b (ENSCARG00000024152)	DNAAF5 (ENSCARG00000024057)	ENSCARG00000024038	sun1b (ENSCARG00000023880)	NHERF2 (ENSCARG00000023859)	dhps (ENSCARG00000023810)	ENSCARG00000023795	ENSCARG00000023788	zgc:77748 (ENSCARG00000023784) ##18	ENSCARG00000023778 ##18	slc25a19 (ENSCARG00000023771)	JMJD8 (ENSCARG00000023763)	amdhd2 (ENSCARG00000023691)	ENSCARG00000023685 ##22	tufm (ENSCARG00000023642)	hspbp1 (ENSCARG00000023616)	ENSCARG00000023597	ptger1b (ENSCARG00000023585)	ilf3b (ENSCARG00000023048)	farsa (ENSCARG00000022752)	syce2 (ENSCARG00000022120)	gcdhb (ENSCARG00000021627)	ENSCARG00000021583	ENSCARG00000021570	SLC44A2 (ENSCARG00000021355)	ENSCARG00000021310	ENSCARG00000021307	nfil3-6 (ENSCARG00000021301)	plppr2a (ENSCARG00000021287)
Euteleosteomorpha	ANCESTRAL SPECIES	62				ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000156555.i.a	ENSGT00940000154322.A.b.b	ENSGT00940000159856	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.a.c.a ##22	ENSGT00940000158816.d	ENSGT00940000158312.f ##20	ENSGT00390000012605	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00990000204060	ENSGT00930000151045.f	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00530000063870.b #35	ENSGT00390000001390.b #36	ENSGT00390000013678
Protacanthopterygii	ANCESTRAL SPECIES	54	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00940000160069	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.a.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00390000001260	ENSGT00940000156355.n.b	ENSGT00940000160498.d	ENSGT00940000164220.f	ENSGT00940000160261.h #30	ENSGT00940000161433
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	9	ENSGT00940000153417.A	ENSGT00390000015528.b	ENSGT00390000013678	ENSGT00390000001390.b.c #36	ENSGT00530000063870.b.c #35	ENSGT01100000263515.a.b.a.b.a.h.e #34	ENSGT00930000151045.f.c	ENSGT00990000204060	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e.a #20	ENSGT00940000163984.B	ENSGT00940000159856.c	ENSGT00940000163071.k #21	ENSGT00390000006009.a.a.b.c.a #22	ENSGT00940000153882.a.b.b.a.c #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a.k #17	ENSGT00550000074873.ob.a.a.a.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00390000001260.f	ENSGT00940000156355.n.b.a	ENSGT00940000160498.d	ENSGT00940000164220.f	ENSGT00940000160261.h.a #30	ENSGT00940000161433
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00440000033742.a.a.a	ENSGT00940000153417.A	ENSGT00390000015528.b	ENSGT00940000160069	ENSGT00390000013678	ENSGT00390000001390.b.c #36	ENSGT00530000063870.b.c #35	ENSGT01100000263515.a.b.a.b.a.h.e #34	ENSGT00930000151045.f.c	ENSGT00990000204060	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e.a #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.c.a #22	ENSGT00940000153882.a.b.b.a.c #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a.k #17	ENSGT00550000074873.ob.a.a.a.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00390000001260.f	ENSGT00940000156355.n.b.a	ENSGT00940000160498.d	ENSGT00940000164220.f	ENSGT00940000160261.h.a #30	ENSGT00940000161433
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000153417.A	ENSGT00390000015528.b	ENSGT00940000160069	ENSGT00390000013678	ENSGT00390000001390.b.c #36	ENSGT00530000063870.b.c #35	ENSGT01100000263515.a.b.a.b.a.h.e #34	ENSGT00930000151045.f.c	ENSGT00990000204060	ENSGT00930000151045.e.c.b	ENSGT00940000158962.d.b.b	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e.a #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.c.a #22	ENSGT00940000153882.a.b.b.a.c #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a.k #17	ENSGT00550000074873.ob.a.a.a.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00390000001260.f	ENSGT00940000156355.n.b.a	ENSGT00940000160498.d	ENSGT00940000164220.f	ENSGT00940000160261.h.a #30	ENSGT00940000161433
River trout	MODERN SPECIES	11	RDH13 (ENSSTUG00000017747)	decr2 (ENSSTUG00000017763)	rab11fip3 (ENSSTUG00000012624)	IFT140 (ENSSTUG00000012679)	tmem204 (ENSSTUG00000012979)	ENSSTUG00000012982	ENSSTUG00000012995	metrn (ENSSTUG00000013012) #36	PRR35 (ENSSTUG00000013022) #35	crp2 (ENSSTUG00000013031) #34	stub1 (ENSSTUG00000013052)	MSS51 (ENSSTUG00000013067) #19	MSS51 (ENSSTUG00000013090) #19	CAPN15 (ENSSTUG00000013104) #20	ENSSTUG00000013212	ENSSTUG00000013274 #22	ntn2 (ENSSTUG00000013299) #23	ENSSTUG00000013352	TBC1D24 (ENSSTUG00000013367) #17	ATP6V0C (ENSSTUG00000013377)	nubp2 (ENSSTUG00000013402) #16	ENSSTUG00000013491 #15	ENSSTUG00000013502	ENSSTUG00000013516 #14	MPRIP (ENSSTUG00000013567) #13	cog7 (ENSSTUG00000014102)	USP31 (ENSSTUG00000014185)	HS3ST2 (ENSSTUG00000014226)	ENSSTUG00000014247	LRRC4B (ENSSTUG00000014255) #30	ENSSTUG00000014265
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000059050	decr2 (ENSSSAG00000059098)	ENSSSAG00000095462	ift140 (ENSSSAG00000059163)	ENSSSAG00000081977	ENSSSAG00000105703	metrn (ENSSSAG00000059509) #36	ENSSSAG00000059527 #35	crp2 (ENSSSAG00000059541) #34	stub1 (ENSSSAG00000059578)	ENSSSAG00000059608	ENSSSAG00000113661 #18	ENSSSAG00000059640 #19	ENSSSAG00000059658 #20	ENSSSAG00000059934	ENSSSAG00000115568 #22	ntn2 (ENSSSAG00000059986) #23	ENSSSAG00000060080	tbc1d24 (ENSSSAG00000060392) #17	ATP6V0C (ENSSSAG00000060426)	nubp2 (ENSSSAG00000060562) #16	ENSSSAG00000112679 #15	ENSSSAG00000061065	mfsd1l (ENSSSAG00000061088) #14	ENSSSAG00000061149 #13	ENSSSAG00000061464	ENSSSAG00000110208	ENSSSAG00000102345	ENSSSAG00000107179	ENSSSAG00000061750 #30	ENSSSAG00000061774
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00940000153801.a.c	ENSGT00440000033742.a.a.a	ENSGT00940000153417.A	ENSGT00390000015528.b	ENSGT00940000160069	ENSGT00390000013678	ENSGT00390000001390.b.c #36	ENSGT00530000063870.b.c #35	ENSGT01100000263515.a.b.a.b.a.h.e #34	ENSGT00930000151045.f.c	ENSGT00990000204060	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e.a #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.c.a #22	ENSGT00940000153882.a.b.b.a.c #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a.k #17	ENSGT00550000074873.ob.a.a.a.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00390000001260.f	ENSGT00940000156355.n.b.a	ENSGT00940000160498.d	ENSGT00940000160261.h.a #30	ENSGT00940000161433	ENSGT00940000160092.A
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT00940000153801.a.c	ENSGT00440000033742.a.a.a	ENSGT00940000153417.A	ENSGT00390000015528.b	ENSGT00940000160069	ENSGT00390000013678	ENSGT00390000001390.b.c #36	ENSGT00530000063870.b.c #35	ENSGT01100000263515.a.b.a.b.a.h.e #34	ENSGT00930000151045.f.c	ENSGT00990000204060	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e.a #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b.c.a #22	ENSGT00940000153882.a.b.b.a.c #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a.k #17	ENSGT00550000074873.ob.a.a.a.a	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00390000001260.f	ENSGT00940000156355.n.b.a	ENSGT00940000160498.d	ENSGT00940000160261.h.a #30	ENSGT00940000161433	ENSGT00940000160092.A
Chinook salmon	MODERN SPECIES	16	rab11fip3 (ENSOTSG00005007028)	IFT140 (ENSOTSG00005007033)	tmem204 (ENSOTSG00005007049)	ENSOTSG00005007050	ENSOTSG00005007055	ENSOTSG00005007057	metrn (ENSOTSG00005007059) #36	ENSOTSG00005007060 #35	ENSOTSG00005007061 #34	stub1 (ENSOTSG00005007063)	ENSOTSG00005007066	MSS51 (ENSOTSG00005007068) #19	MSS51 (ENSOTSG00005007070) #19	ENSOTSG00005007075 #20	ENSOTSG00005007077	ENSOTSG00005007079 #22	ntn2 (ENSOTSG00005007082) #23	ENSOTSG00005007084	TBC1D24 (ENSOTSG00005007088) #17	ATP6V0C (ENSOTSG00005007090)	nubp2 (ENSOTSG00005007099) #16	ENSOTSG00005007100 #15	ENSOTSG00005007101	ENSOTSG00005007102 #14	ENSOTSG00005007118 #13	cog7 (ENSOTSG00005009240)	USP31 (ENSOTSG00005009251)	HS3ST2 (ENSOTSG00005009253)	ENSOTSG00005009254	mybpc2b (ENSOTSG00005009255)	ENSOTSG00005009262
Coho salmon	MODERN SPECIES	12	rab11fip3 (ENSOKIG00005025727)	IFT140 (ENSOKIG00005025768)	tmem204 (ENSOKIG00005025958)	ENSOKIG00005025965	ENSOKIG00005025971	metrn (ENSOKIG00005025983) #36	PRR35 (ENSOKIG00005025987) #35	ENSOKIG00005025993 #34	stub1 (ENSOKIG00005026005)	ENSOKIG00005026013	MSS51 (ENSOKIG00005026028) #19	MSS51 (ENSOKIG00005026050) #19	CAPN15 (ENSOKIG00005026072) #20	ENSOKIG00005026385	ENSOKIG00005026406	ENSOKIG00005026415 #22	ntn2 (ENSOKIG00005026423) #23	ENSOKIG00005026468	TBC1D24 (ENSOKIG00005026491) #17	ENSOKIG00005026507 #14	nubp2 (ENSOKIG00005026636) #16	ENSOKIG00005026657 #15	ENSOKIG00005026670	MPRIP (ENSOKIG00005026803) #13	cog7 (ENSOKIG00005029464)	USP31 (ENSOKIG00005029498)	HS3ST2 (ENSOKIG00005029516)	LRRC4B (ENSOKIG00005029522) #30	mybpc2b (ENSOKIG00005029599)	ENSOKIG00005030396	ENSOKIG00005030416
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000005531	ENSOMYG00000005562	decr2 (ENSOMYG00000005700)	rab11fip3 (ENSOMYG00000005736)	ENSOMYG00000006092	tmem204 (ENSOMYG00000006244)	ENSOMYG00000006322	ENSOMYG00000006377 #35	ENSOMYG00000006401 #34	ENSOMYG00000006426	ENSOMYG00000075510	ENSOMYG00000066292 #19	ENSOMYG00000006472 #19	ENSOMYG00000006503 #20	ENSOMYG00000006547	ENSOMYG00000006557 #22	ntn2 (ENSOMYG00000006571) #23	ENSOMYG00000006713 #17	ENSOMYG00000062193	atp6v0cb (ENSOMYG00000006791)	nubp2 (ENSOMYG00000007090) #16	ENSOMYG00000007151 #15	ENSOMYG00000007186	ENSOMYG00000007261 #14	ENSOMYG00000007593 #13	COG7 (ENSOMYG00000007868)	ENSOMYG00000008030	HS3ST2 (ENSOMYG00000008071)	ENSOMYG00000024935	ENSOMYG00000052115	ENSOMYG00000008167 #30
Huchen	MODERN SPECIES	2208																ENSHHUG00000033103 #22	ntn2 (ENSHHUG00000033106) #23	ENSHHUG00000033113
Salmoninae	ANCESTRAL SPECIES	1062															ENSGT00940000158312.e.b #20	ENSGT00390000006009.a.a.b.c.b #22	ENSGT00940000153882.a.b.b.a.d #23	ENSGT00410000025739.c.a.l #17	ENSGT00550000074873.ob.a.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	86	ENSGT00940000158418	ENSGT00950000183088.a.b.a	ENSGT00940000161586.d.d	ENSGT00940000160871.d.a.d	ENSGT00940000158525.t.g.a	ENSGT01020000230346.F.`b	ENSGT00440000037417.B.b.b	ENSGT01090000260230	ENSGT00990000204711	ENSGT00940000161485	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900.hb.a	ENSGT00950000182987.c.a.a.lb.f.b	ENSGT00940000158312.e.b #20	ENSGT00390000006009.a.a.b.c.b #22	ENSGT00940000153882.a.b.b.a.d #23	ENSGT00410000025739.c.a.l #17	ENSGT00550000074873.ob.a.a.a.b	ENSGT00390000001260.e	ENSGT00940000156355.n.b.b	ENSGT00940000160261.h.b #30	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000164903.a.e.b	ENSGT00940000164511.C.k.a.b	ENSGT00940000154078.a.a.a.d	ENSGT00390000004495.l	ENSGT00970000196788.G	ENSGT00940000157186.c.c	ENSGT00940000160317.h	ENSGT00940000155111.vb.b
Salmo	ANCESTRAL SPECIES	78	ENSGT00940000158418	ENSGT00950000183088.a.b.a	ENSGT00940000161586.d.d	ENSGT00940000160871.d.a.d	ENSGT00940000158525.t.g.a	ENSGT01020000230346.F.`b	ENSGT00440000037417.B.b.b	ENSGT01090000260230	ENSGT00990000204711	ENSGT00940000161485	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900.hb.a	ENSGT00950000182987.c.a.a.lb.f.b	ENSGT00940000158312.e.b #20	ENSGT00390000006009.a.a.b.c.b #22	ENSGT00940000153882.a.b.b.a.d #23	ENSGT00410000025739.c.a.l #17	ENSGT00550000074873.ob.a.a.a.b	ENSGT00390000001260.e	ENSGT00940000156355.n.b.b	ENSGT00940000160261.h.b #30	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000164903.a.e.b	ENSGT00940000164511.C.k.a.b	ENSGT00940000154078.a.a.a.d	ENSGT00390000004495.l	ENSGT00970000196788.G	ENSGT00940000157186.c.c	ENSGT00940000160317.h	ENSGT00940000155111.vb.b
River trout	MODERN SPECIES	1	neurod2 (ENSSTUG00000007131)	ENSSTUG00000007093	psmc5 (ENSSTUG00000006781)	PRR12 (ENSSTUG00000006754)	ENSSTUG00000006745	ENSSTUG00000006718	ENSSTUG00000006709	ENSSTUG00000006678	ENSSTUG00000006664	ENSSTUG00000006662	zgc:92040 (ENSSTUG00000006616)	eif3c (ENSSTUG00000006318)	ALDOA (ENSSTUG00000006280)	ENSSTUG00000006277	CAPN15 (ENSSTUG00000006125) #20	ENSSTUG00000006114 #22	ntn2 (ENSSTUG00000006085) #23	ENSSTUG00000006060 #17	ATP6V0C (ENSSTUG00000006046)	cog7 (ENSSTUG00000005934)	USP31 (ENSSTUG00000005899)	LRRC4B (ENSSTUG00000005890) #30	PPFIA3 (ENSSTUG00000004765)	ENSSTUG00000004704	ENSSTUG00000004691	selenou1b (ENSSTUG00000004669)	LZTS2 (ENSSTUG00000004661)	ENSSTUG00000004649	SEMA4G (ENSSTUG00000004453)	mfsd13a (ENSSTUG00000004408)	plekhm1 (ENSSTUG00000004373)
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000084389	ENSSSAG00000065796	ENSSSAG00000065630	ENSSSAG00000118602	ENSSSAG00000065567	ENSSSAG00000117017	ENSSSAG00000087027	ENSSSAG00000065541	tbx6 (ENSSSAG00000065528)	zgc:92040 (ENSSSAG00000065519)	eif3c (ENSSSAG00000065468)	ENSSSAG00000087098	ENSSSAG00000065456	ENSSSAG00000113404	ENSSSAG00000098383	ENSSSAG00000118592 #22	ENSSSAG00000065447 #23	ENSSSAG00000065386 #17	ENSSSAG00000065372	ENSSSAG00000065327	ENSSSAG00000065323 #30	ENSSSAG00000105349	ENSSSAG00000063754	ENSSSAG00000063669	ENSSSAG00000063179	LZTS2 (ENSSSAG00000063123)	ENSSSAG00000063113	ENSSSAG00000112698	SEMA4G (ENSSSAG00000061057)	mfsd13a (ENSSSAG00000060936)	ENSSSAG00000060911
Oncorhynchus	ANCESTRAL SPECIES	63	ENSGT00940000158418	ENSGT00950000183088.a.b.a	ENSGT00940000161586.d.d	ENSGT00940000160871.d.a.d	ENSGT00940000158525.t.g.a	ENSGT01020000230346.F.`b	ENSGT00440000037417.B.b.b	ENSGT01090000260230	ENSGT00990000204711	ENSGT00940000161485	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900.hb.a	ENSGT00950000182987.c.a.a.lb.f.b	ENSGT00940000158312.e.b #20	ENSGT00390000006009.a.a.b.c.b #22	ENSGT00940000153882.a.b.b.a.d #23	ENSGT00410000025739.c.a.l #17	ENSGT00550000074873.ob.a.a.a.b	ENSGT00390000001260.e	ENSGT00940000156355.n.b.b	ENSGT00940000160261.h.b #30	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000164903.a.e.b	ENSGT00940000164511.C.k.a.b	ENSGT00940000154078.a.a.a.d	ENSGT00390000004495.l	ENSGT00970000196788.G	ENSGT00940000157186.c.c	ENSGT00940000160317.h	ENSGT00940000155111.vb.b
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000050494	ENSOMYG00000007331	ENSOMYG00000007144	ENSOMYG00000006737	ENSOMYG00000006686	ENSOMYG00000006595	ENSOMYG00000006346	ENSOMYG00000005914	ENSOMYG00000005986	ENSOMYG00000005661	ENSOMYG00000005446	tbx6 (ENSOMYG00000011721)	ENSOMYG00000011716	eif3c (ENSOMYG00000011637)	ENSOMYG00000011581 #20	ENSOMYG00000011556 #22	ENSOMYG00000049958	ENSOMYG00000011543 #23	ENSOMYG00000011535 #17	ENSOMYG00000011518	ENSOMYG00000011464	ENSOMYG00000011438 #30	ENSOMYG00000060264	ENSOMYG00000009865	ENSOMYG00000009114	ENSOMYG00000008867	ENSOMYG00000068723	LZTS2 (ENSOMYG00000008647)	ENSOMYG00000072696	ENSOMYG00000008641	ENSOMYG00000008625
Oncorhynchus_a	ANCESTRAL SPECIES	69	ENSGT00940000158418	ENSGT00950000183088.a.b.a	ENSGT00940000161586.d.d	ENSGT00940000160871.d.a.d	ENSGT00940000158525.t.h	ENSGT01020000230346.F.`b	ENSGT00440000037417.B.b.b	ENSGT01090000260230	ENSGT00990000204711	ENSGT00940000161485	ENSGT00940000160732	ENSGT00390000006265.a	ENSGT00390000017900.hb.a	ENSGT00950000182987.c.a.a.lb.f.b	ENSGT00940000158312.e.b #20	ENSGT00390000006009.a.a.b.c.b #22	ENSGT00940000153882.a.b.b.a.d #23	ENSGT00410000025739.c.a.l #17	ENSGT00550000074873.ob.a.a.a.b	ENSGT00390000001260.e	ENSGT00940000156355.n.b.b	ENSGT00940000160261.h.b #30	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000164903.a.e.b	ENSGT00940000164511.C.k.a.b	ENSGT00940000154078.a.a.a.d	ENSGT00390000004495.l	ENSGT00940000157186.c.c	ENSGT00940000160317.h	ENSGT00940000155111.vb.b	ENSGT00940000157744.d.e
Chinook salmon	MODERN SPECIES	17	CCDC186 (ENSOTSG00005037750)	tdrd1 (ENSOTSG00005037772)	casp7 (ENSOTSG00005038166)	nrap (ENSOTSG00005038175)	dnmbp (ENSOTSG00005038250)	znf281b (ENSOTSG00005038668)	neurod2 (ENSOTSG00005038670)	MAZ (ENSOTSG00005038671)	PRR12 (ENSOTSG00005038690)	ENSOTSG00005039615	ENSOTSG00005039616	zgc:92040 (ENSOTSG00005039620)	eif3c (ENSOTSG00005039634)	ALDOA (ENSOTSG00005041009)	CAPN15 (ENSOTSG00005041011) #20	ENSOTSG00005041452 #22	ntn2 (ENSOTSG00005041454) #23	TBC1D24 (ENSOTSG00005041455) #17	ATP6V0C (ENSOTSG00005041456)	cog7 (ENSOTSG00005041460)	ENSOTSG00005041466	LRRC4B (ENSOTSG00005041467) #30	PPFIA3 (ENSOTSG00005041475)	ENSOTSG00005042773	ENSOTSG00005042775	LZTS2 (ENSOTSG00005043031)	ENSOTSG00005043032	SEMA4G (ENSOTSG00005043033)	mfsd13a (ENSOTSG00005043281)	plekhm1 (ENSOTSG00005035583)	kat7b (ENSOTSG00005035604)
Coho salmon	MODERN SPECIES	17	ZNF281 (ENSOKIG00005009926)	NEUROD2 (ENSOKIG00005037605)	ENSOKIG00005037608	MAZ (ENSOKIG00005037667)	PSMC5 (ENSOKIG00005037770)	PRR12 (ENSOKIG00005037989)	ENSOKIG00005038051	ENSOKIG00005038060	ENSOKIG00005038079	tbx6 (ENSOKIG00005038136)	zgc:92040 (ENSOKIG00005038191)	eif3c (ENSOKIG00005038320)	ALDOA (ENSOKIG00005038957)	CAPN15 (ENSOKIG00005039026) #20	ENSOKIG00005039278	ENSOKIG00005039292 #22	ENSOKIG00005039308 #23	TBC1D24 (ENSOKIG00005039344) #17	ATP6V0C (ENSOKIG00005039365)	COG7 (ENSOKIG00005039438)	LRRC4B (ENSOKIG00005039656) #30	PPFIA3 (ENSOKIG00005039714)	ENSOKIG00005040103	ENSOKIG00005040324	LZTS2 (ENSOKIG00005043012)	ENSOKIG00005043019	SEMA4G (ENSOKIG00005043078)	mfsd13a (ENSOKIG00005043823)	ENSOKIG00005043869	kat7b (ENSOKIG00005044008)	ENSOKIG00005045602
Huchen	MODERN SPECIES	262							metrn (ENSHHUG00000047359) #36	ENSHHUG00000047364	PRR35 (ENSHHUG00000047367) #35	ENSHHUG00000047370	stub1 (ENSHHUG00000047386)	ENSHHUG00000047390 #20	ENSHHUG00000047392 #20	ENSHHUG00000047410 #20	ENSHHUG00000047413	ENSHHUG00000047414 #22	ntn2 (ENSHHUG00000047415) #23	ENSHHUG00000047452	TBC1D24 (ENSHHUG00000047454) #17	ATP6V0C (ENSHHUG00000047458)	cdhr1a (ENSHHUG00000047467)	ENSHHUG00000047472
Salmoninae	ANCESTRAL SPECIES	328	ENSGT00940000158783.a.b.o	ENSGT01030000234641.a.a.a.d	ENSGT00510000047420.i	ENSGT00940000160491.d.b.d	ENSGT00940000164396	ENSGT00940000159252.b.b.a	ENSGT00940000160492.e	ENSGT00950000183143.c.b.n	ENSGT00390000014062	ENSGT00390000014771.b.a	ENSGT00390000002810.k	ENSGT00940000160286.hb	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00390000012605	ENSGT00390000006009.a.a.b.d #22	ENSGT00550000074873.ob.a.b.a.b	ENSGT00550000074873.ob.a.a.b.a	ENSGT01030000234629.E.a.b.d ##15	ENSGT00390000008964	ENSGT00940000161283	ENSGT00940000153496.a.a.q	ENSGT00390000007652.d	ENSGT00390000003337.f.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a
Salmoninae_a	ANCESTRAL SPECIES	141	ENSGT00940000158783.a.b.o	ENSGT01030000234641.a.a.a.d	ENSGT00510000047420.i	ENSGT00940000160491.d.b.d	ENSGT00940000164396	ENSGT00940000159252.b.b.a	ENSGT00940000160492.e	ENSGT00950000183143.c.b.n	ENSGT00390000014062	ENSGT00390000014771.b.a	ENSGT00390000002810.k	ENSGT00940000160286.hb	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00390000012605	ENSGT00390000006009.a.a.b.d #22	ENSGT00550000074873.ob.a.a.b.a	ENSGT01030000234629.E.a.b.d ##15	ENSGT00390000008964	ENSGT00940000161283	ENSGT00940000153496.a.a.q	ENSGT00390000007652.d	ENSGT00390000003337.f.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000158783.a.b.o	ENSGT01030000234641.a.a.a.d	ENSGT00510000047420.i	ENSGT00940000160491.d.b.d	ENSGT00940000164396	ENSGT00940000159252.b.b.a	ENSGT00940000160492.e	ENSGT00950000183143.c.b.n	ENSGT00390000014062	ENSGT00390000014771.b.a	ENSGT00390000002810.k	ENSGT00940000160286.hb	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00390000012605	ENSGT00390000006009.a.a.b.d #22	ENSGT00550000074873.ob.a.a.b.a	ENSGT01030000234629.E.a.b.d ##15	ENSGT00390000008964	ENSGT00940000161283	ENSGT00940000153496.a.a.q	ENSGT00390000007652.d	ENSGT00390000003337.e	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT01030000234586.A.a.a.b.g ##12	ENSGT00940000155286.m.b ##13	ENSGT00940000153222.a.b.a	ENSGT00940000180096.b
River trout	MODERN SPECIES	25	sfxn5b (ENSSTUG00000019539)	smyd5 (ENSSTUG00000019748)	ENSSTUG00000019880	pitpnbl (ENSSTUG00000019914)	ENSSTUG00000019941	SEZ6L2 (ENSSTUG00000019961)	ENSSTUG00000020144	kctd13 (ENSSTUG00000020152)	hirip3 (ENSSTUG00000020170)	antkmt (ENSSTUG00000020193)	xpo6 (ENSSTUG00000020221)	nme4 (ENSSTUG00000020398)	ccdc137 (ENSSTUG00000020409)	GPRC5C (ENSSTUG00000020419)	amdhd2 (ENSSTUG00000020435)	nog2 (ENSSTUG00000020464) #22	ATP6V0C (ENSSTUG00000020476)	spsb3a (ENSSTUG00000020487) ##15	mrps34 (ENSSTUG00000020498)	nme3 (ENSSTUG00000020510)	mapk8ip3 (ENSSTUG00000020567)	jpt2 (ENSSTUG00000021077)	CRAMP1 (ENSSTUG00000021095)	natd1 (ENSSTUG00000021110)	tmem11 (ENSSTUG00000021114)	dhrs7b (ENSSTUG00000021126)	ENSSTUG00000021144	parp14rs1 (ENSSTUG00000021154)	ENSSTUG00000021239 ##12	ENSSTUG00000021245 ##13	lin7b (ENSSTUG00000021278)
Atlantic salmon	MODERN SPECIES	22	sfxn5b (ENSSSAG00000001324)	ENSSSAG00000001355	ENSSSAG00000100128	ENSSSAG00000001416	ENSSSAG00000001424	sez6l2 (ENSSSAG00000001491)	ENSSSAG00000001746	hirip3 (ENSSSAG00000001751)	fam173a (ENSSSAG00000001756)	ENSSSAG00000001798	nme4 (ENSSSAG00000002048)	ccdc137 (ENSSSAG00000002067)	ENSSSAG00000117067	ENSSSAG00000002078	ENSSSAG00000002099	ENSSSAG00000002113 #22	ENSSSAG00000035106	ENSSSAG00000102967	spsb3a (ENSSSAG00000002130) ##15	ENSSSAG00000100412	ENSSSAG00000096951	mrps34 (ENSSSAG00000002136)	nme3 (ENSSSAG00000002150)	mapk8ip3 (ENSSSAG00000002339)	ENSSSAG00000098109	ENSSSAG00000088647	jpt2 (ENSSSAG00000002627)	ENSSSAG00000085847	ENSSSAG00000075095	ENSSSAG00000118877	dhrs7b (ENSSSAG00000000277)
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000158783.a.b.o	ENSGT01030000234641.a.a.a.d	ENSGT00510000047420.i	ENSGT00940000160491.d.b.d	ENSGT00940000164396	ENSGT00940000159252.b.b.a	ENSGT00940000160492.e	ENSGT00950000183143.c.b.n	ENSGT00390000014062	ENSGT00390000014771.b.a	ENSGT00390000002810.k	ENSGT00940000160286.hb	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00390000012605	ENSGT00390000006009.a.a.b.d #22	ENSGT00550000074873.ob.a.a.b.a	ENSGT01030000234629.E.a.b.d ##15	ENSGT00390000008964	ENSGT00940000161283	ENSGT00940000153496.a.a.q	ENSGT00390000007652.d	ENSGT00390000003337.f.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT01030000234586.A.a.a.b.g ##12	ENSGT00940000155286.m.b ##13	ENSGT00940000153222.a.b.a	ENSGT00940000180096.b
Oncorhynchus_a	ANCESTRAL SPECIES	49	ENSGT00940000158783.a.b.o	ENSGT01030000234641.a.a.a.d	ENSGT00510000047420.i	ENSGT00940000160491.d.b.d	ENSGT00940000164396	ENSGT00940000159252.b.b.a	ENSGT00940000160492.e	ENSGT00950000183143.c.b.n	ENSGT00390000014062	ENSGT00390000014771.b.a	ENSGT00390000002810.k	ENSGT00940000160286.hb	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00390000012605	ENSGT00390000006009.a.a.b.d #22	ENSGT00550000074873.ob.a.a.b.a	ENSGT01030000234629.E.a.b.d ##15	ENSGT00390000008964	ENSGT00940000161283	ENSGT00940000153496.a.a.q	ENSGT00390000007652.d	ENSGT00390000003337.f.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT01030000234586.A.a.a.b.g ##12	ENSGT00940000155286.m.b ##13	ENSGT00940000153222.a.b.a	ENSGT00940000180096.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005033727	sfxn5b (ENSOTSG00005033729)	smyd5 (ENSOTSG00005033743)	ENSOTSG00005033788	pitpnbl (ENSOTSG00005033790)	ASPHD2 (ENSOTSG00005033795)	SEZ6L2 (ENSOTSG00005033807)	kctd13 (ENSOTSG00005033865)	hirip3 (ENSOTSG00005033866)	antkmt (ENSOTSG00005033867)	xpo6 (ENSOTSG00005033869)	nme4 (ENSOTSG00005034244)	ccdc137 (ENSOTSG00005034247)	GPRC5C (ENSOTSG00005034251)	amdhd2 (ENSOTSG00005034259)	nog2 (ENSOTSG00005034294) #22	ATP6V0C (ENSOTSG00005034295)	spsb3a (ENSOTSG00005030605) ##15	mrps34 (ENSOTSG00005030606)	nme3 (ENSOTSG00005030608)	mapk8ip3 (ENSOTSG00005030621)	jpt2 (ENSOTSG00005031524)	CRAMP1 (ENSOTSG00005031526)	dhrs7b (ENSOTSG00005031528)	tmem11 (ENSOTSG00005031529)	natd1 (ENSOTSG00005031531)	parp14rs1 (ENSOTSG00005031534)	ENSOTSG00005031537 ##12	ENSOTSG00005031538 ##13	DOC2A (ENSOTSG00005031541)	ENSOTSG00005031542
Chinook salmon	MODERN SPECIES	2924	ENSOTSG00005028134	sfxn5b (ENSOTSG00005028135)	smyd5 (ENSOTSG00005028146)	ENSOTSG00005028212	pitpnbl (ENSOTSG00005028214)	ASPHD2 (ENSOTSG00005028215)	SEZ6L2 (ENSOTSG00005028219)	kctd13 (ENSOTSG00005028222)	hirip3 (ENSOTSG00005028224)	antkmt (ENSOTSG00005028225)	xpo6 (ENSOTSG00005028226)	nme4 (ENSOTSG00005029591)	ccdc137 (ENSOTSG00005029593)	GPRC5C (ENSOTSG00005029595)	amdhd2 (ENSOTSG00005029597)	nog2 (ENSOTSG00005029626) #22	ATP6V0C (ENSOTSG00005029627)	spsb3a (ENSOTSG00005029635) ##15	mrps34 (ENSOTSG00005029636)	nme3 (ENSOTSG00005029637)	mapk8ip3 (ENSOTSG00005029643)	jpt2 (ENSOTSG00005029954)	CRAMP1 (ENSOTSG00005029955)	dhrs7b (ENSOTSG00005029956)	tmem11 (ENSOTSG00005029957)	natd1 (ENSOTSG00005029958)	parp14rs1 (ENSOTSG00005029961)	ENSOTSG00005029965 ##12	ENSOTSG00005029966	ENSOTSG00005029967 ##13	lin7b (ENSOTSG00005029969)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005010657	sfxn5b (ENSOKIG00005010700)	ENSOKIG00005010883	pitpnbl (ENSOKIG00005010893)	ENSOKIG00005010924	SEZ6L2 (ENSOKIG00005010980)	kctd13 (ENSOKIG00005011221)	ENSOKIG00005011231	hirip3 (ENSOKIG00005011236)	antkmt (ENSOKIG00005011245)	xpo6 (ENSOKIG00005011283)	nme4 (ENSOKIG00005012349)	ccdc137 (ENSOKIG00005012364)	GPRC5C (ENSOKIG00005012368)	amdhd2 (ENSOKIG00005012381)	ENSOKIG00005026218 #22	ATP6V0C (ENSOKIG00005026233)	ENSOKIG00005026273	spsb3a (ENSOKIG00005026283) ##15	mrps34 (ENSOKIG00005026293)	nme3 (ENSOKIG00005026313)	mapk8ip3 (ENSOKIG00005026395)	jpt2 (ENSOKIG00005026684)	CRAMP1 (ENSOKIG00005026710)	dhrs7b (ENSOKIG00005026739)	tmem11 (ENSOKIG00005026756)	natd1 (ENSOKIG00005026764)	parp14rs1 (ENSOKIG00005026786)	ENSOKIG00005026931 ##12	ENSOKIG00005026943 ##13	lin7b (ENSOKIG00005026987)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000063958	ENSOMYG00000018110	ENSOMYG00000018127	ENSOMYG00000018153	ENSOMYG00000069055	ENSOMYG00000018203	ENSOMYG00000052203	ENSOMYG00000018839	hirip3 (ENSOMYG00000018846)	antkmt (ENSOMYG00000018851)	ENSOMYG00000018956	nme4 (ENSOMYG00000019542)	ENSOMYG00000019548	ENSOMYG00000019555	ENSOMYG00000019633	ENSOMYG00000019676 #22	ENSOMYG00000019687	spsb3a (ENSOMYG00000019705) ##15	mrps34 (ENSOMYG00000019712)	nme3 (ENSOMYG00000019726)	mapk8ip3 (ENSOMYG00000019947)	jpt2 (ENSOMYG00000023087)	ENSOMYG00000023101	ENSOMYG00000023118	tmem11 (ENSOMYG00000060635)	ENSOMYG00000023135	ENSOMYG00000023318	ENSOMYG00000023479 ##12	ENSOMYG00000053305	ENSOMYG00000023495 ##13	ENSOMYG00000023614
Huchen	MODERN SPECIES	807												nme4 (ENSHHUG00000045173)	ccdc137 (ENSHHUG00000045617)	GPRC5C (ENSHHUG00000045620)	amdhd2 (ENSHHUG00000045624)	nog2 (ENSHHUG00000045641) #22	ATP6V0C (ENSHHUG00000045643)	spsb3a (ENSHHUG00000045739) ##15	mrps34 (ENSHHUG00000045740)	nme3 (ENSHHUG00000045743)	mapk8ip3 (ENSHHUG00000045754)	jpt2 (ENSHHUG00000046044)	CRAMP1 (ENSHHUG00000046050)	dhrs7b (ENSHHUG00000046054)	tmem11 (ENSHHUG00000046061)	natd1 (ENSHHUG00000046065)
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	4	IFT140 (ENSELUG00000009274)	tmem204 (ENSELUG00000009216)	ENSELUG00000009198	ENSELUG00000009169	metrn (ENSELUG00000009153) #36	PRR35 (ENSELUG00000009134) #35	crp2 (ENSELUG00000009114) #34	ENSELUG00000009079 #18	stub1 (ENSELUG00000009069)	ENSELUG00000033384	ENSELUG00000027125 #18	MSS51 (ENSELUG00000009033) #19	MSS51 (ENSELUG00000008983) #19	CAPN15 (ENSELUG00000008954) #20	ENSELUG00000008905	ENSELUG00000008808 #22	ENSELUG00000031211	ntn2 (ENSELUG00000008784) #23	ENSELUG00000008750	TBC1D24 (ENSELUG00000008718) #17	ATP6V0C (ENSELUG00000008702)	nubp2 (ENSELUG00000008677) #16	ENSELUG00000008620 #15	ENSELUG00000008594	ENSELUG00000000321 #14	MPRIP (ENSELUG00000008438) #13	cog7 (ENSELUG00000008183)	USP31 (ENSELUG00000008082)	HS3ST2 (ENSELUG00000008051)	ENSELUG00000028779	LRRC4B (ENSELUG00000008003) #30
Northern pike	MODERN SPECIES	10	cabp5b (ENSELUG00000008887)	pitpnbl (ENSELUG00000008928)	ENSELUG00000025165	ENSELUG00000008967	kctd13 (ENSELUG00000008989)	ENSELUG00000009004	antkmt (ENSELUG00000009029)	xpo6 (ENSELUG00000009159)	nme4 (ENSELUG00000029985)	ENSELUG00000009242	ccdc137 (ENSELUG00000009272)	GPRC5C (ENSELUG00000009299)	CAPN15 (ENSELUG00000009318) ##20	ENSELUG00000025997	amdhd2 (ENSELUG00000009397)	nog2 (ENSELUG00000009426) #22	ENSELUG00000033910	ENSELUG00000022963	ATP6V0C (ENSELUG00000009437)	spsb3a (ENSELUG00000009455) ##15	mrps34 (ENSELUG00000009475)	nme3 (ENSELUG00000009505)	mapk8ip3 (ENSELUG00000009632)	jpt2 (ENSELUG00000009677)	CRAMP1 (ENSELUG00000009700)	dhrs7b (ENSELUG00000009719)	tmem11 (ENSELUG00000009727)	natd1 (ENSELUG00000009743)	ENSELUG00000009784	parp14rs1 (ENSELUG00000009798)	ENSELUG00000026231
Acanthomorphata	ANCESTRAL SPECIES	23												ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36	ENSGT00390000013678
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000164220.g.a	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.m	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000011134	ENSMAMG00000026681 ##31	ENSMAMG00000011121 #31	ENSMAMG00000011107 #31	ENSMAMG00000011018	ENSMAMG00000010966	ENSMAMG00000010950 #30	ENSMAMG00000010942	ENSMAMG00000010936	ENSMAMG00000010891	ENSMAMG00000010856	ENSMAMG00000010812 #19	ENSMAMG00000026355 #19	ENSMAMG00000010762 #20	ENSMAMG00000010756	nog2 (ENSMAMG00000010740) #22	ntn2 (ENSMAMG00000010731) #23	ENSMAMG00000010692	ENSMAMG00000010662 #17	ATP6V0C (ENSMAMG00000025214)	nubp2 (ENSMAMG00000010637) #16	ENSMAMG00000010617 #15	ENSMAMG00000010583	ENSMAMG00000010548 #14	ENSMAMG00000010525	ENSMAMG00000010355	ENSMAMG00000010337 #35	ENSMAMG00000010328 #34	ENSMAMG00000010308	metrn (ENSMAMG00000010298) #36	tmem204 (ENSMAMG00000025271)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000013678
Climbing perch	MODERN SPECIES	10	ENSATEG00000017515	ENSATEG00000017494	ENSATEG00000017470 ##31	ENSATEG00000017459 #31	ENSATEG00000029745 #31	ENSATEG00000017258	ENSATEG00000017164	ENSATEG00000028786 #30	ENSATEG00000017107	ENSATEG00000017057	ENSATEG00000016997	ENSATEG00000026789 #19	ENSATEG00000030151 #19	ENSATEG00000016822 #20	ENSATEG00000016799	nog2 (ENSATEG00000016782) #22	ntn2 (ENSATEG00000016766) #23	ENSATEG00000016755	ENSATEG00000016732 #17	ATP6V0C (ENSATEG00000016719)	nubp2 (ENSATEG00000016699) #16	ENSATEG00000016686 #15	ENSATEG00000016671	ENSATEG00000016644 #14	ENSATEG00000016599	ENSATEG00000016451 #13	ENSATEG00000016425	ENSATEG00000016409 #35	ENSATEG00000027066 #34	ENSATEG00000016370	metrn (ENSATEG00000016359) #36
Siamese fighting fish	MODERN SPECIES	9	fgf21 (ENSBSLG00000008833)	PPFIA3 (ENSBSLG00000007913)	ENSBSLG00000007380	ENSBSLG00000007365 ##31	ENSBSLG00000007361 #31	mybpc2b (ENSBSLG00000007218)	ENSBSLG00000006696	LRRC4B (ENSBSLG00000005923) #30	HS3ST2 (ENSBSLG00000005918)	USP31 (ENSBSLG00000005887)	cog7 (ENSBSLG00000005525)	MSS51 (ENSBSLG00000005455) #19	ENSBSLG00000005423 #19	ENSBSLG00000005415 #20	ENSBSLG00000005142	nog2 (ENSBSLG00000005108) #22	ntn2 (ENSBSLG00000005025) #23	ENSBSLG00000004980	TBC1D24 (ENSBSLG00000020690) #17	ATP6V0C (ENSBSLG00000020689)	nubp2 (ENSBSLG00000020683) #16	ENSBSLG00000020675 #15	ENSBSLG00000020673 #14	ABLIM1 (ENSBSLG00000020669)	PRR35 (ENSBSLG00000020664) #35	crp2 (ENSBSLG00000020662) #34	stub1 (ENSBSLG00000020657)	metrn (ENSBSLG00000020656) #36	ENSBSLG00000020655	tmem204 (ENSBSLG00000020653)	IFT140 (ENSBSLG00000020602)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000013678
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000013678
Greater amberjack	MODERN SPECIES	27	PPFIA3 (ENSSDUG00000023357)	ENSSDUG00000000073	ENSSDUG00000000135 #31	ENSSDUG00000000162 #31	mybpc2b (ENSSDUG00000000197)	ENSSDUG00000000332	LRRC4B (ENSSDUG00000000408) #30	ENSSDUG00000000439	USP31 (ENSSDUG00000000463)	cog7 (ENSSDUG00000000519)	ENSSDUG00000000587 #18	MSS51 (ENSSDUG00000000606) #19	MSS51 (ENSSDUG00000000640) #19	CAPN15 (ENSSDUG00000000678) #20	ENSSDUG00000000750	nog2 (ENSSDUG00000000764) #22	ntn2 (ENSSDUG00000000780) #23	ENSSDUG00000000851	TBC1D24 (ENSSDUG00000000932) #17	ATP6V0C (ENSSDUG00000000954)	nubp2 (ENSSDUG00000000978) #16	ENSSDUG00000001009 #15	ENSSDUG00000001038	ENSSDUG00000001052 #14	ablim1b (ENSSDUG00000001109)	MPRIP (ENSSDUG00000001143) #13	ENSSDUG00000001215	ENSSDUG00000001243 #35	crp2 (ENSSDUG00000001278) #34	stub1 (ENSSDUG00000001294)	metrn (ENSSDUG00000001304) #36
Yellowtail amberjack	MODERN SPECIES	2878	ENSSLDG00000011463 ##31	ENSSLDG00000011475 #31	ENSSLDG00000011498 #31	mybpc2b (ENSSLDG00000011549)	ENSSLDG00000011659	LRRC4B (ENSSLDG00000011676) #30	ENSSLDG00000011691	USP31 (ENSSLDG00000011705)	cog7 (ENSSLDG00000011729)	ENSSLDG00000011774 #18	ENSSLDG00000011784 #18	MSS51 (ENSSLDG00000011799) #19	ENSSLDG00000011819 #19	CAPN15 (ENSSLDG00000011854) #20	ENSSLDG00000011931	nog2 (ENSSLDG00000011955) #22	ntn2 (ENSSLDG00000011975) #23	ENSSLDG00000012002	TBC1D24 (ENSSLDG00000012032) #17	ATP6V0C (ENSSLDG00000012068)	nubp2 (ENSSLDG00000012088) #16	ENSSLDG00000012132 #15	ENSSLDG00000012162	ENSSLDG00000012191 #14	ablim1b (ENSSLDG00000012253)	MPRIP (ENSSLDG00000012327) #13	ENSSLDG00000012487	PRR35 (ENSSLDG00000012526) #35	crp2 (ENSSLDG00000012559) #34	stub1 (ENSSLDG00000012577)	metrn (ENSSLDG00000012588) #36
Barramundi perch	MODERN SPECIES	195	ENSLCAG00010000761	ENSLCAG00010000745 ##31	ENSLCAG00010000741 #31	ENSLCAG00010000739 #31	mybpc2b (ENSLCAG00010000705)	ENSLCAG00010000655	LRRC4B (ENSLCAG00010000649) #30	ENSLCAG00010000644	ENSLCAG00010000639	USP31 (ENSLCAG00010000614)	cog7 (ENSLCAG00010000548)	ENSLCAG00010000519 #18	ENSLCAG00010000502 #18	MSS51 (ENSLCAG00010000491) #19	MSS51 (ENSLCAG00010000486) #19	nog2 (ENSLCAG00010000410) #22	ntn2 (ENSLCAG00010000396) #23	ENSLCAG00010000383	TBC1D24 (ENSLCAG00010000372) #17	ATP6V0C (ENSLCAG00010000340)	nubp2 (ENSLCAG00010000302) #16	ENSLCAG00010000282 #15	ENSLCAG00010000268	ENSLCAG00010000239 #14	ablim1b (ENSLCAG00010026799)	MPRIP (ENSLCAG00010026790) #13	ENSLCAG00010026773	ENSLCAG00010026769 #35	crp2 (ENSLCAG00010026767) #34	stub1 (ENSLCAG00010026765)	metrn (ENSLCAG00010026764) #36
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36
Turbot	MODERN SPECIES	9	ENSSMAG00000035681 ##31	ENSSMAG00000015118 #31	ENSSMAG00000015097 #31	ENSSMAG00000014766	ENSSMAG00000014708	ENSSMAG00000014678 #30	ENSSMAG00000014663	ENSSMAG00000014625	ENSSMAG00000014575	ENSSMAG00000029485 #18	ENSSMAG00000014549 #19	ENSSMAG00000014526 #19	ENSSMAG00000014472 #20	ENSSMAG00000014414	ENSSMAG00000031672 #21	nog2 (ENSSMAG00000014390) #22	ENSSMAG00000014384	ENSSMAG00000014370	ntn2 (ENSSMAG00000014362) #23	ENSSMAG00000014337	ENSSMAG00000014320 #17	ATP6V0C (ENSSMAG00000014308)	nubp2 (ENSSMAG00000014291) #16	ENSSMAG00000014256 #15	ENSSMAG00000014224	ENSSMAG00000014201 #14	ENSSMAG00000014171	ENSSMAG00000013881 #35	ENSSMAG00000035710 #34	ENSSMAG00000013859	ENSSMAG00000013837
Tongue sole	MODERN SPECIES	18	ENSCSEG00000019318	ENSCSEG00000019315	ENSCSEG00000019310	ENSCSEG00000019307	ENSCSEG00000019303 ##31	ENSCSEG00000019291 #31	cog7 (ENSCSEG00000019266)	USP31 (ENSCSEG00000019256)	LRRC4B (ENSCSEG00000019254) #30	ENSCSEG00000019250	mybpc2b (ENSCSEG00000019242)	ENSCSEG00000019232	ENSCSEG00000019230 #19	MSS51 (ENSCSEG00000018930) #19	CAPN15 (ENSCSEG00000018917) #20	nog2 (ENSCSEG00000018913) #22	TBC1D24 (ENSCSEG00000018904) #17	ATP6V0C (ENSCSEG00000018902)	nubp2 (ENSCSEG00000018886) #16	ENSCSEG00000018877 #35	ENSCSEG00000018867	ENSCSEG00000018856	ftsj1 (ENSCSEG00000018843)	ENSCSEG00000018839	ENSCSEG00000018796	aldoaa (ENSCSEG00000018782)	ENSCSEG00000018666	zgc:112038 (ENSCSEG00000018654)	ENSCSEG00000018643	ENSCSEG00000018639	ENSCSEG00000017808
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00940000153417.A
Fugu	MODERN SPECIES		ENSTRUG00000013290	ENSTRUG00000013329	PPFIA3 (ENSTRUG00000013342)	ENSTRUG00000027287	ENSTRUG00000028919 ##31	ENSTRUG00000024447 #31	mybpc2b (ENSTRUG00000013734)	ENSTRUG00000013930	LRRC4B (ENSTRUG00000002618) #30	ENSTRUG00000014088	cog7 (ENSTRUG00000014115)	MSS51 (ENSTRUG00000032136) #19	MSS51 (ENSTRUG00000014257) #19	CAPN15 (ENSTRUG00000014283) #20	ENSTRUG00000031750	nog2 (ENSTRUG00000014323) #22	ntn2 (ENSTRUG00000014332) #23	TBC1D24 (ENSTRUG00000014498) #17	ENSTRUG00000025985 #15	ENSTRUG00000023248	ENSTRUG00000014585 #14	ABLIM1 (ENSTRUG00000027510)	MPRIP (ENSTRUG00000014685) #13	ENSTRUG00000025439 #35	crp2 (ENSTRUG00000014803) #34	stub1 (ENSTRUG00000014817)	metrn (ENSTRUG00000025221) #36	tmem204 (ENSTRUG00000028725)	IFT140 (ENSTRUG00000014865)	telo2 (ENSTRUG00000014963)	rab11fip3 (ENSTRUG00000015066)
Tetraodon	MODERN SPECIES	13	tlcd3ba (ENSTNIG00000006532)	ENSTNIG00000001006	ENSTNIG00000006576	PPFIA3 (ENSTNIG00000006577)	mybpc2b (ENSTNIG00000012787)	ENSTNIG00000012788	LRRC4B (ENSTNIG00000012789) #30	ENSTNIG00000012790	USP31 (ENSTNIG00000012791)	cog7 (ENSTNIG00000012792)	MSS51 (ENSTNIG00000012793) #19	MSS51 (ENSTNIG00000012794) #19	ENSTNIG00000001735 #20	ENSTNIG00000012795 #20	ENSTNIG00000012796	nog2 (ENSTNIG00000012797) #22	ntn2 (ENSTNIG00000012798) #23	ENSTNIG00000012799	TBC1D24 (ENSTNIG00000012800) #17	ATP6V0C (ENSTNIG00000012801)	nubp2 (ENSTNIG00000012802) #16	ENSTNIG00000012803 #15	ENSTNIG00000012804	ENSTNIG00000012805 #14	ENSTNIG00000001356 #14	ABLIM1 (ENSTNIG00000012806)	MPRIP (ENSTNIG00000012807) #13	PRR35 (ENSTNIG00000012808) #35	crp2 (ENSTNIG00000000855) #34	stub1 (ENSTNIG00000012809)	metrn (ENSTNIG00000012810) #36
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Ballan wrasse	MODERN SPECIES	103	ENSLBEG00000013029 ##31	ENSLBEG00000013054 #31	ENSLBEG00000013069 #31	mybpc2b (ENSLBEG00000013094)	ENSLBEG00000013177	LRRC4B (ENSLBEG00000013211) #30	ENSLBEG00000013243	USP31 (ENSLBEG00000013316)	cog7 (ENSLBEG00000013453)	ENSLBEG00000013548 #18	MSS51 (ENSLBEG00000013561) #19	MSS51 (ENSLBEG00000013576) #19	CAPN15 (ENSLBEG00000013641) #20	ENSLBEG00000013719	ENSLBEG00000013738	nog2 (ENSLBEG00000013774) #22	ntn2 (ENSLBEG00000013806) #23	ENSLBEG00000013844	TBC1D24 (ENSLBEG00000013880) #17	ATP6V0C (ENSLBEG00000013910)	nubp2 (ENSLBEG00000013929) #16	ENSLBEG00000013963 #15	ENSLBEG00000014000	ENSLBEG00000014037 #14	ablim1b (ENSLBEG00000014091)	MPRIP (ENSLBEG00000014183) #13	ENSLBEG00000014299	ENSLBEG00000014324 #35	crp2 (ENSLBEG00000014340) #34	stub1 (ENSLBEG00000014362)	metrn (ENSLBEG00000014389) #36
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Perciformes	ANCESTRAL SPECIES	9	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000171105	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Lumpfish	MODERN SPECIES	10	PPFIA3 (ENSCLMG00005011890)	ENSCLMG00005011887	ENSCLMG00005011885 ##31	ENSCLMG00005011884 #31	ENSCLMG00005011883 #31	mybpc2b (ENSCLMG00005011580)	ENSCLMG00005011566	LRRC4B (ENSCLMG00005011538) #30	ENSCLMG00005011534	USP31 (ENSCLMG00005011531)	cog7 (ENSCLMG00005011481)	MSS51 (ENSCLMG00005011476) #19	ENSCLMG00005011475 #19	CAPN15 (ENSCLMG00005011469) #20	ENSCLMG00005011462	nog2 (ENSCLMG00005011461) #22	ntn2 (ENSCLMG00005011460) #23	ENSCLMG00005011457	TBC1D24 (ENSCLMG00005011375) #17	ATP6V0C (ENSCLMG00005011370)	nubp2 (ENSCLMG00005011341) #16	ENSCLMG00005011338 #15	ENSCLMG00005011337	ENSCLMG00005011321 #14	ENSCLMG00005011315	MPRIP (ENSCLMG00005011092) #13	ENSCLMG00005011088	ENSCLMG00005011085	PRR35 (ENSCLMG00005011084) #35	crp2 (ENSCLMG00005011083) #34	stub1 (ENSCLMG00005011082)
Stickleback	MODERN SPECIES	5	ENSGACG00000008100	ENSGACG00000008107 #31	mybpc2b (ENSGACG00000008110)	ENSGACG00000008187	LRRC4B (ENSGACG00000008204) #30	ENSGACG00000008205	HS3ST2 (ENSGACG00000008211)	ENSGACG00000008213	USP31 (ENSGACG00000008214)	cog7 (ENSGACG00000008223)	ENSGACG00000008231 #18	MSS51 (ENSGACG00000008232) #19	ENSGACG00000008245	ENSGACG00000008248 #20	ENSGACG00000008256	nog2 (ENSGACG00000008267) #22	ntn2 (ENSGACG00000008270) #23	ENSGACG00000008273	TBC1D24 (ENSGACG00000008278) #17	ATP6V0C (ENSGACG00000008293)	nubp2 (ENSGACG00000008320) #16	ENSGACG00000008335 #15	ENSGACG00000008342	ENSGACG00000008345	ENSGACG00000008354 #14	ablim1b (ENSGACG00000008370)	MPRIP (ENSGACG00000008379) #13	ENSGACG00000008397	PRR35 (ENSGACG00000008401) #35	crp2 (ENSGACG00000008405) #34	stub1 (ENSGACG00000008414)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000171105	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000022417	ENSCGOG00000022458	ENSCGOG00000022460 ##31	ENSCGOG00000022462 #31	ENSCGOG00000022464 #31	mybpc2b (ENSCGOG00000022522)	ENSCGOG00000023638	LRRC4B (ENSCGOG00000023642) #30	HS3ST2 (ENSCGOG00000023645)	cog7 (ENSCGOG00000023661)	ENSCGOG00000023755 #18	ENSCGOG00000023757	MSS51 (ENSCGOG00000023759) #19	ENSCGOG00000023766	ENSCGOG00000023771 #21	nog2 (ENSCGOG00000023772) #22	ntn2 (ENSCGOG00000023774) #23	ENSCGOG00000023779	TBC1D24 (ENSCGOG00000023787) #17	ATP6V0C (ENSCGOG00000023789)	nubp2 (ENSCGOG00000023793) #16	ENSCGOG00000023798 #15	ENSCGOG00000002375	ENSCGOG00000002387 #14	ablim1b (ENSCGOG00000002421)	MPRIP (ENSCGOG00000002508) #13	ENSCGOG00000002842	PRR35 (ENSCGOG00000002848) #35	metrn (ENSCGOG00000002854) #36	ENSCGOG00000002857	IFT140 (ENSCGOG00000002896)
Pike perch	MODERN SPECIES	3	ENSSLUG00000007535	ENSSLUG00000007546 ##31	ENSSLUG00000007554 #31	ENSSLUG00000007564 #31	mybpc2b (ENSSLUG00000007632)	ENSSLUG00000008501	LRRC4B (ENSSLUG00000008516) #30	ENSSLUG00000008519	USP31 (ENSSLUG00000008523)	cog7 (ENSSLUG00000008549)	MSS51 (ENSSLUG00000008603) #19	MSS51 (ENSSLUG00000008611) #19	CAPN15 (ENSSLUG00000008620) #20	ENSSLUG00000008629	ENSSLUG00000008640	nog2 (ENSSLUG00000008648) #22	ntn2 (ENSSLUG00000008652) #23	ENSSLUG00000008663	TBC1D24 (ENSSLUG00000008676) #17	ATP6V0C (ENSSLUG00000008682)	nubp2 (ENSSLUG00000008697) #16	ENSSLUG00000008704 #15	ENSSLUG00000008708	ENSSLUG00000008716 #14
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
European seabass	MODERN SPECIES	11	ENSDLAG00005009944	ENSDLAG00005009857	ENSDLAG00005009847 ##31	ENSDLAG00005009831 #31	ENSDLAG00005009828 #31	ENSDLAG00005009509	ENSDLAG00005009401	LRRC4B (ENSDLAG00005027065) #30	ENSDLAG00005009392	HS3ST2 (ENSDLAG00005009389)	ENSDLAG00005009372	COG7 (ENSDLAG00005009341)	ENSDLAG00005034965 #19	ENSDLAG00005009199 #20	ENSDLAG00005009161	nog2 (ENSDLAG00005009159) #22	ntn2 (ENSDLAG00005009141) #23	ENSDLAG00005009119	ENSDLAG00005009116 #17	VATL (ENSDLAG00005030834)	nubp2 (ENSDLAG00005009011) #16	ENSDLAG00005033812 #15	ENSDLAG00005032822	ENSDLAG00005008970 #14	ENSDLAG00005008922	ENSDLAG00005007478 #13	ENSDLAG00005007415	ENSDLAG00005007396 #35	ENSDLAG00005007389 #34	ENSDLAG00005007372	metrn (ENSDLAG00005027335) #36
Large yellow croaker	MODERN SPECIES	488	PPFIA3 (ENSLCRG00005007020)	ENSLCRG00005007158	ENSLCRG00005007160 ##31	ENSLCRG00005007161 #31	ENSLCRG00005007162 #31	mybpc2b (ENSLCRG00005007183)	ENSLCRG00005010195	LRRC4B (ENSLCRG00005010197) #30	ENSLCRG00005010199	USP31 (ENSLCRG00005010204)	cog7 (ENSLCRG00005010213)	MSS51 (ENSLCRG00005010219) #19	MSS51 (ENSLCRG00005010220) #19	CAPN15 (ENSLCRG00005010225) #20	ENSLCRG00005010420	nog2 (ENSLCRG00005010428) #22	ntn2 (ENSLCRG00005010430) #23	ENSLCRG00005010432	TBC1D24 (ENSLCRG00005010433) #17	ATP6V0C (ENSLCRG00005010434)	nubp2 (ENSLCRG00005010439) #16	ENSLCRG00005010521 #15	ENSLCRG00005010524	ENSLCRG00005010525 #14	ablim1b (ENSLCRG00005010527)	MPRIP (ENSLCRG00005010537) #13	ENSLCRG00005011143	PRR35 (ENSLCRG00005011147) #35	crp2 (ENSLCRG00005011150) #34	stub1 (ENSLCRG00005007262)	metrn (ENSLCRG00005007265) #36
Gilthead seabream	MODERN SPECIES	12	PPFIA3 (ENSSAUG00010023520)	ENSSAUG00010023491	ENSSAUG00010023489 ##31	ENSSAUG00010023488 #31	ENSSAUG00010023487 #31	mybpc2b (ENSSAUG00010016277)	ENSSAUG00010016199	LRRC4B (ENSSAUG00010016196) #30	HS3ST2 (ENSSAUG00010016195)	USP31 (ENSSAUG00010016188)	cog7 (ENSSAUG00010016184)	MSS51 (ENSSAUG00010016183) #19	MSS51 (ENSSAUG00010016181) #19	CAPN15 (ENSSAUG00010016176) #20	ENSSAUG00010016172	nog2 (ENSSAUG00010016171) #22	ntn2 (ENSSAUG00010016169) #23	ENSSAUG00010016162	TBC1D24 (ENSSAUG00010016158) #17	ATP6V0C (ENSSAUG00010016151)	nubp2 (ENSSAUG00010016136) #16	ENSSAUG00010016130 #15	ENSSAUG00010018228	ENSSAUG00010018226 #14	ablim1b (ENSSAUG00010016992)	MPRIP (ENSSAUG00010016963) #13	ENSSAUG00010016957	PRR35 (ENSSAUG00010016954) #35	crp2 (ENSSAUG00010016953) #34	stub1 (ENSSAUG00010016951)	metrn (ENSSAUG00010016950) #36
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000015528
Turquoise killifish	MODERN SPECIES	1621	ENSNFUG00015014925 ##31	CU896602.1 (ENSNFUG00015014933) #31	MYBPC2B (ENSNFUG00015015418)	ENSNFUG00015020555	LRRC4BB (ENSNFUG00015020564) #30	ENSNFUG00015020566	HS3ST2 (ENSNFUG00015020570)	USP31 (ENSNFUG00015020572)	COG7 (ENSNFUG00015020600)	ENSNFUG00015020756	MSS51 (ENSNFUG00015020759) #19	MSS51 (ENSNFUG00015020764) #19	SOLH (ENSNFUG00015020769) #20	CABZ01117977.1 (ENSNFUG00015020828)	ENSNFUG00015020846	NOG2 (ENSNFUG00015020847) #22	ntn2 (ENSNFUG00015020850) #23	ENSNFUG00015020855	Nfu_g_1_022957 (ENSNFUG00015020862) #17	NUBP2 (ENSNFUG00015020865) #16	CU929145.4 (ENSNFUG00015020868) #15	CABZ01072828.1 (ENSNFUG00015020869)	ENSNFUG00015020873	UBE2I2 (ENSNFUG00015020875)	kctd5a (ENSNFUG00015020878)	pdpk1b (ENSNFUG00015020901)	tsr3 (ENSNFUG00015021441)	GNPTG (ENSNFUG00015021446)	ENSNFUG00015021462	ENSNFUG00015021463	ENSNFUG00015021464
Mangrove rivulus	MODERN SPECIES	43	ENSKMAG00000014603	ENSKMAG00000014549 ##31	ENSKMAG00000014533 #31	mybpc2b (ENSKMAG00000014296)	ENSKMAG00000014209	LRRC4B (ENSKMAG00000014177) #30	ENSKMAG00000014153	ENSKMAG00000014138	USP31 (ENSKMAG00000014093)	cog7 (ENSKMAG00000014031)	ENSKMAG00000014004 #18	MSS51 (ENSKMAG00000013985) #19	MSS51 (ENSKMAG00000013961) #19	ENSKMAG00000013932	CAPN15 (ENSKMAG00000013861) #20	nog2 (ENSKMAG00000013828) #22	ntn2 (ENSKMAG00000013813) #23	ENSKMAG00000013779	TBC1D24 (ENSKMAG00000013755) #17	ATP6V0C (ENSKMAG00000013738)	nubp2 (ENSKMAG00000013705) #16	ENSKMAG00000013678 #15	ENSKMAG00000013655	ENSKMAG00000013619 #14	ENSKMAG00000013592	MPRIP (ENSKMAG00000013360) #13	ENSKMAG00000013265	ENSKMAG00000013252	ENSKMAG00000013232 #35	crp2 (ENSKMAG00000013219) #34	stub1 (ENSKMAG00000013186)
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36
Poecilia	ANCESTRAL SPECIES	22	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00990000204060	ENSGT00390000001390.b #36
Guppy	MODERN SPECIES	449	ENSPREG00000019581	ENSPREG00000019558	PIGT (ENSPREG00000019528)	phactr3a (ENSPREG00000019481)	ENSPREG00000019379	ENSPREG00000019354	LRRC4B (ENSPREG00000019331) #30	ENSPREG00000019296	USP31 (ENSPREG00000019269)	cog7 (ENSPREG00000019233)	ENSPREG00000019223 #18	ENSPREG00000019214 #18	ENSPREG00000019204 #19	MSS51 (ENSPREG00000019194) #19	CAPN15 (ENSPREG00000019164) #20	nog2 (ENSPREG00000019142) #22	ntn2 (ENSPREG00000019132) #23	ENSPREG00000018954	TBC1D24 (ENSPREG00000018921) #17	ATP6V0C (ENSPREG00000018910)	nubp2 (ENSPREG00000018897) #16	ENSPREG00000018838 #15	ENSPREG00000018817	ENSPREG00000018795 #14	ENSPREG00000018778	ENSPREG00000018744 #13	PRR35 (ENSPREG00000018723) #35	crp2 (ENSPREG00000018713) #34	stub1 (ENSPREG00000018698)	ENSPREG00000018685	metrn (ENSPREG00000018650) #36
NAME_6	ANCESTRAL SPECIES	118	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17
Sailfin molly	MODERN SPECIES	746															ENSPLAG00000010928	nog2 (ENSPLAG00000010943) #22	ntn2 (ENSPLAG00000011251) #23	ENSPLAG00000011268	TBC1D24 (ENSPLAG00000011294) #17
Amazon molly	MODERN SPECIES	531	mybpc2b (ENSPFOG00000017525)	ENSPFOG00000017447	LRRC4B (ENSPFOG00000017440) #30	ENSPFOG00000017439	ENSPFOG00000017435	USP31 (ENSPFOG00000017384)	ENSPFOG00000020789 #18	ENSPFOG00000022049 #18	cog7 (ENSPFOG00000017289)	ENSPFOG00000020788 #18	ENSPFOG00000022363 #18	MSS51 (ENSPFOG00000017283) #19	MSS51 (ENSPFOG00000017264) #19	CAPN15 (ENSPFOG00000017205) #20	ENSPFOG00000017141	nog2 (ENSPFOG00000020787) #22	ntn2 (ENSPFOG00000017087) #23	ENSPFOG00000016990
Platyfish	MODERN SPECIES	1	PPFIA3 (ENSXMAG00000001587)	ENSXMAG00000007344	ENSXMAG00000007346 ##31	mybpc2b (ENSXMAG00000007350)	ENSXMAG00000022346	LRRC4B (ENSXMAG00000023350) #30	ENSXMAG00000010788	ENSXMAG00000024688	USP31 (ENSXMAG00000019002)	cog7 (ENSXMAG00000019008)	ENSXMAG00000019435 #18	MSS51 (ENSXMAG00000019041) #19	MSS51 (ENSXMAG00000019043) #19	CAPN15 (ENSXMAG00000019044) #20	ENSXMAG00000008777	nog2 (ENSXMAG00000019533) #22	ntn2 (ENSXMAG00000008784) #23	ENSXMAG00000023095	ENSXMAG00000000130	TBC1D24 (ENSXMAG00000000127) #17	ATP6V0C (ENSXMAG00000009861)	nubp2 (ENSXMAG00000009869) #16	ENSXMAG00000009890 #15	ENSXMAG00000020840	ENSXMAG00000009893	ENSXMAG00000000122 #14	ENSXMAG00000000107	ENSXMAG00000029437	MPRIP (ENSXMAG00000000091) #13	PRR35 (ENSXMAG00000000090) #35	crp2 (ENSXMAG00000024415) #34
NAME_4	ANCESTRAL SPECIES	15	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT01090000260249	ENSGT00940000160498.d	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00940000164586.g.b	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f
Mummichog	MODERN SPECIES	2201	PPFIA3 (ENSFHEG00000002376)	ENSFHEG00000002332	ENSFHEG00000002301 ##31	ENSFHEG00000002297 #31	mybpc2b (ENSFHEG00000002271)	ENSFHEG00000002212	LRRC4B (ENSFHEG00000002191) #30	ENSFHEG00000002188	HS3ST2 (ENSFHEG00000002181)	USP31 (ENSFHEG00000002177)	cog7 (ENSFHEG00000002164)	MSS51 (ENSFHEG00000002149) #19	MSS51 (ENSFHEG00000002138) #19	CAPN15 (ENSFHEG00000002132) #20	ENSFHEG00000000060	nog2 (ENSFHEG00000002118) #22	ntn2 (ENSFHEG00000002114) #23	ENSFHEG00000002100	TBC1D24 (ENSFHEG00000002051) #17	ATP6V0C (ENSFHEG00000002041)	nubp2 (ENSFHEG00000002036) #16	ENSFHEG00000002027 #15	ENSFHEG00000002023 #14	ablim1b (ENSFHEG00000002012)	ENSFHEG00000001983	MPRIP (ENSFHEG00000001970) #13	ENSFHEG00000001929	PRR35 (ENSFHEG00000001922) #35	crp2 (ENSFHEG00000001920) #34	stub1 (ENSFHEG00000001916)	metrn (ENSFHEG00000001910) #36
Sheepshead minnow	MODERN SPECIES	225					mybpc2b (ENSCVAG00000001429)	ENSCVAG00000001443	LRRC4B (ENSCVAG00000001449) #30	ENSCVAG00000001454	ENSCVAG00000001457	cog7 (ENSCVAG00000001465)	ENSCVAG00000001468 #18	MSS51 (ENSCVAG00000001472) #19	MSS51 (ENSCVAG00000001479) #19	CAPN15 (ENSCVAG00000001490) #20	ENSCVAG00000001497 #21	nog2 (ENSCVAG00000001502) #22	ntn2 (ENSCVAG00000001511) #23	ENSCVAG00000001524	TBC1D24 (ENSCVAG00000001532) #17	ATP6V0C (ENSCVAG00000001537)	nubp2 (ENSCVAG00000001546) #16	ENSCVAG00000001550 #15	ENSCVAG00000001554	ENSCVAG00000001563 #14	ablim1b (ENSCVAG00000000059)	ENSCVAG00000001574	MPRIP (ENSCVAG00000000066) #13	ENSCVAG00000001622	ENSCVAG00000001625 #35	crp2 (ENSCVAG00000001629) #34	stub1 (ENSCVAG00000001632)
Oryzias	ANCESTRAL SPECIES	11	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00940000153417.A
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00940000153417.A
Indian medaka	MODERN SPECIES	17	ENSOMEG00000018237	ENSOMEG00000018222	PPFIA3 (ENSOMEG00000018206)	ENSOMEG00000018177 #31	mybpc2b (ENSOMEG00000018161)	ENSOMEG00000018089	LRRC4B (ENSOMEG00000018057) #30	ENSOMEG00000018040	USP31 (ENSOMEG00000018029)	cog7 (ENSOMEG00000017975)	ENSOMEG00000017920 #18	MSS51 (ENSOMEG00000000456) #19	ENSOMEG00000017899 #19	CAPN15 (ENSOMEG00000017877) #20	ENSOMEG00000017774	nog2 (ENSOMEG00000017552) #22	ntn2 (ENSOMEG00000017535) #23	ENSOMEG00000017484	TBC1D24 (ENSOMEG00000017447) #17	ENSOMEG00000000433 #15	nubp2 (ENSOMEG00000017373) #16	ENSOMEG00000017346	ENSOMEG00000017305 #14	ABLIM1 (ENSOMEG00000017233)	MPRIP (ENSOMEG00000017141) #13	ENSOMEG00000016826 #35	metrn (ENSOMEG00000000423) #36	crp2 (ENSOMEG00000016738) #34	stub1 (ENSOMEG00000016713)	IFT140 (ENSOMEG00000016697)	tmem204 (ENSOMEG00000016665)
Javanese ricefish	MODERN SPECIES	10	ENSOJAG00000014684	PPFIA3 (ENSOJAG00000014764)	ENSOJAG00000015296	ENSOJAG00000015379 #31	ENSOJAG00000015392 #31	mybpc2b (ENSOJAG00000015570)	ENSOJAG00000017336	LRRC4B (ENSOJAG00000017368) #30	ENSOJAG00000017372	USP31 (ENSOJAG00000017381)	cog7 (ENSOJAG00000017398)	MSS51 (ENSOJAG00000017466) #19	ENSOJAG00000017470 #19	CAPN15 (ENSOJAG00000017486) #20	ENSOJAG00000017856	nog2 (ENSOJAG00000017884) #22	ntn2 (ENSOJAG00000017890) #23	ENSOJAG00000017916	TBC1D24 (ENSOJAG00000017948) #17	ATP6V0C (ENSOJAG00000017966)	NUBP2 (ENSOJAG00000018016) #16	ENSOJAG00000018094 #15	ENSOJAG00000018108	ENSOJAG00000018137 #14	ablim1b (ENSOJAG00000018215)	MPRIP (ENSOJAG00000018315) #13	ENSOJAG00000018544 #35	crp2 (ENSOJAG00000018563) #34	stub1 (ENSOJAG00000018591)	metrn (ENSOJAG00000018607) #36	IFT140 (ENSOJAG00000018626)
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00940000153417.A
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000030276	ENSORLG00000006976 #31	ENSORLG00000023038 #31	mybpc2b (ENSORLG00000007015)	ENSORLG00000007037	ENSORLG00000029384 #30	ENSORLG00000007051	ENSORLG00000007066	cog7 (ENSORLG00000007096)	MSS51 (ENSORLG00000023306) #19	ENSORLG00000007099 #18	ENSORLG00000007112 #19	CAPN15 (ENSORLG00000007128) #20	ENSORLG00000007139	ENSORLG00000029249	nog2 (ENSORLG00000007149) #22	ntn2 (ENSORLG00000007171) #23	ENSORLG00000007176	TBC1D24 (ENSORLG00000007193) #17	ATP6V0C (ENSORLG00000007201)	nubp2 (ENSORLG00000007228) #16	ENSORLG00000007244 #15	ENSORLG00000030257	ENSORLG00000007252 #14	ENSORLG00000007293	MPRIP (ENSORLG00000007330) #13	ENSORLG00000007335 #35	crp2 (ENSORLG00000007351) #34	stub1 (ENSORLG00000007370)	metrn (ENSORLG00000027097) #36	IFT140 (ENSORLG00000007425)
Chinese medaka	MODERN SPECIES	1099	ENSOSIG00000009683	PPFIA3 (ENSOSIG00000009695)	ENSOSIG00000010010	ENSOSIG00000010018 #31	ENSOSIG00000007147 #31	mybpc2b (ENSOSIG00000007149)	ENSOSIG00000007574	LRRC4B (ENSOSIG00000007578) #30	ENSOSIG00000007579	USP31 (ENSOSIG00000007584)	cog7 (ENSOSIG00000007590)	MSS51 (ENSOSIG00000007594) #19	MSS51 (ENSOSIG00000007596) #19	CAPN15 (ENSOSIG00000007603) #20	ENSOSIG00000007619	nog2 (ENSOSIG00000007632) #22	ntn2 (ENSOSIG00000007636) #23	ENSOSIG00000007641	TBC1D24 (ENSOSIG00000007647) #17	ATP6V0C (ENSOSIG00000007650)	nubp2 (ENSOSIG00000007693) #16	ENSOSIG00000007717 #15	ENSOSIG00000007718 #14	ABLIM1 (ENSOSIG00000007729)	MPRIP (ENSOSIG00000007794) #13	ENSOSIG00000008037 #35	crp2 (ENSOSIG00000008041) #34	stub1 (ENSOSIG00000008048)	metrn (ENSOSIG00000008052) #36	IFT140 (ENSOSIG00000008058)	tmem204 (ENSOSIG00000008065)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000013678
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT01090000260249	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000013678
Amphiprion	ANCESTRAL SPECIES	28	ENSGT00940000161121	ENSGT00930000151196.a.b ##31	ENSGT00930000151196.a.a.c #31	ENSGT00930000151196.a.a.d #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000164220.g.a	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36	ENSGT00390000013678	ENSGT00390000015528
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000009010	ENSAPEG00000008984	ENSAPEG00000008949 ##31	ENSAPEG00000008935 #31	ENSAPEG00000008916 #31	mybpc2b (ENSAPEG00000008844)	ENSAPEG00000008753	LRRC4B (ENSAPEG00000008706) #30	ENSAPEG00000008692	ENSAPEG00000008684	cog7 (ENSAPEG00000008589)	ENSAPEG00000008576 #18	MSS51 (ENSAPEG00000008557) #19	MSS51 (ENSAPEG00000008549) #19	CAPN15 (ENSAPEG00000008463) #20	nog2 (ENSAPEG00000008436) #22	ntn2 (ENSAPEG00000008233) #23	ENSAPEG00000008139	TBC1D24 (ENSAPEG00000008117) #17	ATP6V0C (ENSAPEG00000008089)	nubp2 (ENSAPEG00000008059) #16	ENSAPEG00000008043 #15	ENSAPEG00000008013 #14	ablim1b (ENSAPEG00000007990)	MPRIP (ENSAPEG00000007906) #13	ENSAPEG00000007856	PRR35 (ENSAPEG00000007846) #35	crp2 (ENSAPEG00000007829) #34	stub1 (ENSAPEG00000007820)	metrn (ENSAPEG00000007805) #36	ENSAPEG00000007770
Clown anemonefish	MODERN SPECIES	3327								ENSAOCG00000011267	USP31 (ENSAOCG00000011035)	cog7 (ENSAOCG00000000697)	ENSAOCG00000010969 #18	MSS51 (ENSAOCG00000010961) #19	MSS51 (ENSAOCG00000010937) #19	CAPN15 (ENSAOCG00000010925) #20	ENSAOCG00000000677 #21	nog2 (ENSAOCG00000010860) #22	ntn2 (ENSAOCG00000010850) #23	ENSAOCG00000010825	TBC1D24 (ENSAOCG00000010740) #17	ATP6V0C (ENSAOCG00000010714)	nubp2 (ENSAOCG00000010697) #16	ENSAOCG00000010663 #15	ENSAOCG00000010622 #14	ablim1b (ENSAOCG00000010569)	MPRIP (ENSAOCG00000000660) #13	ENSAOCG00000002101	PRR35 (ENSAOCG00000002402) #35	RGS6 (ENSAOCG00000010330)	SIPA1L1 (ENSAOCG00000002118)	GPX2 (ENSAOCG00000010201)	RAB15 (ENSAOCG00000002532)
Spiny chromis	MODERN SPECIES	46	PPFIA3 (ENSAPOG00000019157)	ENSAPOG00000000528	ENSAPOG00000018970 #31	mybpc2b (ENSAPOG00000018952)	ENSAPOG00000018857	LRRC4B (ENSAPOG00000018853) #30	ENSAPOG00000018839	ENSAPOG00000018816	USP31 (ENSAPOG00000018799)	cog7 (ENSAPOG00000018792)	ENSAPOG00000018704 #18	MSS51 (ENSAPOG00000018693) #19	MSS51 (ENSAPOG00000018663) #19	CAPN15 (ENSAPOG00000018650) #20	ENSAPOG00000018574	nog2 (ENSAPOG00000018550) #22	ntn2 (ENSAPOG00000000936) #23	ENSAPOG00000018504	TBC1D24 (ENSAPOG00000018494) #17	ATP6V0C (ENSAPOG00000018472)	nubp2 (ENSAPOG00000018445) #16	ENSAPOG00000018403 #15	ENSAPOG00000018359	ENSAPOG00000000501 #14	MPRIP (ENSAPOG00000018301) #13
Bicolor damselfish	MODERN SPECIES	1472															ENSSPAG00000013593	nog2 (ENSSPAG00000013611) #22	ntn2 (ENSSPAG00000013620) #23	ENSSPAG00000013631	TBC1D24 (ENSSPAG00000013703) #17	ATP6V0C (ENSSPAG00000013734)	nubp2 (ENSSPAG00000013743) #16
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198 #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00930000151045.f	ENSGT00390000001390.b #36
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000167425	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198.d #14	ENSGT00940000165198.c #14	ENSGT00950000182850.a.a.a	ENSGT01090000260189	ENSGT00940000155286.m.a #13	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00990000204060
Haplochromini	ANCESTRAL SPECIES	17	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000179726	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198.d.a #14	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00930000151045.f	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00530000063870.b #35
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000179726	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198.d.a #14	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00930000151045.f	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00530000063870.b #35
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT01050000244900.a.b.f.b	ENSGT00940000161121	ENSGT00930000151196.a.a.c #31	ENSGT00940000160092.A	ENSGT00940000161433	ENSGT00940000160261.h #30	ENSGT00940000154768.B	ENSGT00940000156355.n.b	ENSGT00390000001260	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b.b #19	ENSGT00940000153820.b.b.a #19	ENSGT00940000158312.e #20	ENSGT00940000179726	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873.ob.a.b.b	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.a #15	ENSGT00530000063937.b	ENSGT00940000165198.d.a #14	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00930000151045.f	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00530000063870.b #35
Eastern happy	MODERN SPECIES	20	becn1 (ENSACLG00000009324)	ENSACLG00000009344	itgb3b (ENSACLG00000009367)	mybpc2b (ENSACLG00000009667)	ENSACLG00000009757	LRRC4B (ENSACLG00000009772) #30	ENSACLG00000009773	USP31 (ENSACLG00000009781)	cog7 (ENSACLG00000009797)	ENSACLG00000009806 #18	MSS51 (ENSACLG00000009817) #19	ENSACLG00000009826 #19	CAPN15 (ENSACLG00000009847) #20	ENSACLG00000010365	ENSACLG00000010395	nog2 (ENSACLG00000010400) #22	ntn2 (ENSACLG00000010413) #23	ENSACLG00000010422	TBC1D24 (ENSACLG00000010489) #17	ATP6V0C (ENSACLG00000010503)	nubp2 (ENSACLG00000010518) #16	ENSACLG00000010555 #15	ENSACLG00000010570	ENSACLG00000010627 #14	IFT140 (ENSACLG00000010766)	tmem204 (ENSACLG00000011031)	ENSACLG00000011056	metrn (ENSACLG00000011147) #36	stub1 (ENSACLG00000011159)	crp2 (ENSACLG00000011181) #34	ENSACLG00000011190 #35
Zebra mbuna	MODERN SPECIES	1111	PPFIA3 (ENSMZEG00005012226)	ENSMZEG00005012141	ENSMZEG00005012122 #31	mybpc2b (ENSMZEG00005011992)	ENSMZEG00005011951	LRRC4B (ENSMZEG00005011944) #30	ENSMZEG00005011939	USP31 (ENSMZEG00005011921)	cog7 (ENSMZEG00005011883)	ENSMZEG00005011875 #18	MSS51 (ENSMZEG00005011864) #19	ENSMZEG00005011857 #19	CAPN15 (ENSMZEG00005011822) #20	ENSMZEG00005011807	ENSMZEG00005011797	nog2 (ENSMZEG00005011791) #22	ntn2 (ENSMZEG00005011774) #23	ENSMZEG00005011740	TBC1D24 (ENSMZEG00005011724) #17	ATP6V0C (ENSMZEG00005011714)	nubp2 (ENSMZEG00005011700) #16	ENSMZEG00005011678 #15	ENSMZEG00005011684	ENSMZEG00005011652 #14	ENSMZEG00005011647	ENSMZEG00005011634	ENSMZEG00005011619	WDR90 (ENSMZEG00005011589)	h1-0 (ENSMZEG00005011567)	rhot2 (ENSMZEG00005011542)	rhbdl1 (ENSMZEG00005011521)
P. nyererei	MODERN SPECIES	518	ENSPNYG00000013656	ENSPNYG00000013628	PPFIA3 (ENSPNYG00000013576)	ENSPNYG00000013458	ENSPNYG00000013434 #31	mybpc2b (ENSPNYG00000013287)	ENSPNYG00000013206	LRRC4B (ENSPNYG00000013161) #30	ENSPNYG00000013141	USP31 (ENSPNYG00000013096)	cog7 (ENSPNYG00000013050)	ENSPNYG00000013031 #18	MSS51 (ENSPNYG00000013015) #19	MSS51 (ENSPNYG00000012997) #19	CAPN15 (ENSPNYG00000012944) #20	nog2 (ENSPNYG00000012917) #22	ntn2 (ENSPNYG00000012852) #23	ENSPNYG00000012782	TBC1D24 (ENSPNYG00000012761) #17	ATP6V0C (ENSPNYG00000012737)	nubp2 (ENSPNYG00000012702) #16	ENSPNYG00000012679 #15	ENSPNYG00000012607	ENSPNYG00000012564 #14
Burton s mouthbrooder	MODERN SPECIES	457	PPFIA3 (ENSHBUG00000018291)	ENSHBUG00000000863	ENSHBUG00000018059 #31	mybpc2b (ENSHBUG00000018037)	ENSHBUG00000017849	LRRC4B (ENSHBUG00000017836) #30	ENSHBUG00000017827	USP31 (ENSHBUG00000017808)	cog7 (ENSHBUG00000017783)	ENSHBUG00000017688 #18	MSS51 (ENSHBUG00000017668) #19	MSS51 (ENSHBUG00000017653) #19	CAPN15 (ENSHBUG00000017628) #20	ENSHBUG00000017544	ENSHBUG00000017498	nog2 (ENSHBUG00000017486) #22	ntn2 (ENSHBUG00000017474) #23	ENSHBUG00000017459	TBC1D24 (ENSHBUG00000017438) #17	ATP6V0C (ENSHBUG00000017412)	nubp2 (ENSHBUG00000017399) #16	ENSHBUG00000017363 #15	ENSHBUG00000017355	ENSHBUG00000017342 #14	ENSHBUG00000017303 #14	ABLIM1 (ENSHBUG00000017260)	ENSHBUG00000017239
Lyretail cichlid	MODERN SPECIES	499	pigp (ENSNBRG00000011687)	ENSNBRG00000011673	ENSNBRG00000011654	ENSNBRG00000011643	mybpc2b (ENSNBRG00000011543)	ENSNBRG00000011431	LRRC4B (ENSNBRG00000011379) #30	ENSNBRG00000011361	USP31 (ENSNBRG00000011312)	cog7 (ENSNBRG00000011267)	ENSNBRG00000011255 #18	MSS51 (ENSNBRG00000011221) #19	ENSNBRG00000011209 #19	CAPN15 (ENSNBRG00000011154) #20	ENSNBRG00000011132 #21	nog2 (ENSNBRG00000011119) #22	ntn2 (ENSNBRG00000011103) #23	ENSNBRG00000011033	TBC1D24 (ENSNBRG00000010990) #17	ATP6V0C (ENSNBRG00000010977)	nubp2 (ENSNBRG00000010955) #16	ENSNBRG00000010927 #15	ENSNBRG00000010896
Nile tilapia	MODERN SPECIES	20	PPFIA3 (ENSONIG00000020046)	ENSONIG00000030987	ENSONIG00000020044 #31	ENSONIG00000031861	mybpc2b (ENSONIG00000020041)	ENSONIG00000020039	LRRC4B (ENSONIG00000020038) #30	ENSONIG00000040988	USP31 (ENSONIG00000020034)	cog7 (ENSONIG00000020033)	ENSONIG00000033430	MSS51 (ENSONIG00000020032) #19	MSS51 (ENSONIG00000020031) #19	CAPN15 (ENSONIG00000020030) #20	ENSONIG00000020029	nog2 (ENSONIG00000021210) #22	ntn2 (ENSONIG00000020028) #23	ENSONIG00000020027	TBC1D24 (ENSONIG00000020026) #17	ATP6V0C (ENSONIG00000020025)	nubp2 (ENSONIG00000020024) #16	ENSONIG00000020023 #15	ENSONIG00000020022	ENSONIG00000020021 #14	ABLIM1 (ENSONIG00000020020)	MPRIP (ENSONIG00000020019) #13	ENSONIG00000029887 #35	crp2 (ENSONIG00000038131) #34	stub1 (ENSONIG00000042182)	metrn (ENSONIG00000020015) #36	RAB11FIP3 (ENSONIG00000020009)
Midas cichlid	MODERN SPECIES	194						mybpc2b (ENSACIG00000007807)	ENSACIG00000007755	LRRC4B (ENSACIG00000007734) #30	ENSACIG00000007721	USP31 (ENSACIG00000007685)	cog7 (ENSACIG00000007639)	ENSACIG00000007632 #18	MSS51 (ENSACIG00000007618) #19	MSS51 (ENSACIG00000007594) #19	CAPN15 (ENSACIG00000007568) #20	nog2 (ENSACIG00000007558) #22	ntn2 (ENSACIG00000007431) #23	ENSACIG00000007364	TBC1D24 (ENSACIG00000007348) #17	ATP6V0C (ENSACIG00000007338)	nubp2 (ENSACIG00000007318) #16	ENSACIG00000007278 #15	ENSACIG00000007253	ENSACIG00000007227 #14	ablim1b (ENSACIG00000007205)	ENSACIG00000007193	ENSACIG00000007148 #13	ENSACIG00000007133 #35	crp2 (ENSACIG00000007113) #34	stub1 (ENSACIG00000007066)	metrn (ENSACIG00000007044) #36
Tiger tail seahorse	MODERN SPECIES	330	gfra1b (ENSHCOG00000002885)	ENSHCOG00000002902	rbp4 (ENSHCOG00000002918)	cep55l (ENSHCOG00000002927)	pde6c (ENSHCOG00000002946)	fra10ac1 (ENSHCOG00000002956)	lgi1b (ENSHCOG00000000838)	SLC35G1 (ENSHCOG00000002968)	plce1 (ENSHCOG00000003015)	pcdh15b (ENSHCOG00000003058)	nmt1b (ENSHCOG00000003133)	ENSHCOG00000003167	ENSHCOG00000003186	znf281b (ENSHCOG00000003194)	muc13b (ENSHCOG00000003201)	nog2 (ENSHCOG00000003213) #22	ntn2 (ENSHCOG00000003226) #23	TBC1D24 (ENSHCOG00000003244) #17	ATP6V0C (ENSHCOG00000003262)	nubp2 (ENSHCOG00000003287) #16	ENSHCOG00000003333	ENSHCOG00000003319 #15	ENSHCOG00000003340 #14	ENSHCOG00000003354	ENSHCOG00000003382 #13	ENSHCOG00000003411
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	10	ENSMMDG00005006627 ##31	ENSMMDG00005006629 #31	ENSMMDG00005006632 #31	mybpc2b (ENSMMDG00005006642)	ENSMMDG00005006650	LRRC4B (ENSMMDG00005006840) #30	ENSMMDG00005006842	ENSMMDG00005006844	HS3ST2 (ENSMMDG00005006845)	USP31 (ENSMMDG00005006847)	cog7 (ENSMMDG00005006849)	ENSMMDG00005006870 #18	MSS51 (ENSMMDG00005006871) #19	ENSMMDG00005006875 #19	CAPN15 (ENSMMDG00005006878) #20	ENSMMDG00005006889 #22	ntn2 (ENSMMDG00005006892) #23	ENSMMDG00005006896	TBC1D24 (ENSMMDG00005006898) #17	ATP6V0C (ENSMMDG00005006900)	nubp2 (ENSMMDG00005006934) #16	ENSMMDG00005006938 #15	ENSMMDG00005006942	ENSMMDG00005006944 #14	ablim1b (ENSMMDG00005006947)	ENSMMDG00005006950	MPRIP (ENSMMDG00005006959) #13	ENSMMDG00005007648 #35	crp2 (ENSMMDG00005007652) #34	stub1 (ENSMMDG00005007655)	metrn (ENSMMDG00005007657) #36
Pinecone sodierfish	MODERN SPECIES	22	ENSMMDG00005011508	zgc:100868 (ENSMMDG00005011385)	fus (ENSMMDG00005011362)	arl6ip1 (ENSMMDG00005011356)	mvp (ENSMMDG00005009599)	TLCD3B (ENSMMDG00005009556)	nlk1 (ENSMMDG00005009545)	ENSMMDG00005009541	cdipt (ENSMMDG00005009537)	ENSMMDG00005006806	ENSMMDG00005006710	JMJD8 (ENSMMDG00005006706)	STUB1 (ENSMMDG00005006703)	CAPN15 (ENSMMDG00005006699) ##20	amdhd2 (ENSMMDG00005006398)	nog2 (ENSMMDG00005006385) #22	ENSMMDG00005006383	ENSMMDG00005006349 ##34	suz12a (ENSMMDG00005006250)	crlf3 (ENSMMDG00005006231)	ENSMMDG00005006229	nde1 (ENSMMDG00005006224)	ENSMMDG00005006209	ENSMMDG00005006201	ENSMMDG00005006197	gsg1l (ENSMMDG00005006196)	ENSMMDG00005006194	ENSMMDG00005006192	ENSMMDG00005006190	ENSMMDG00005006189	ENSMMDG00005006188
Osteoglossiformes	ANCESTRAL SPECIES	87	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00390000006698	ENSGT00390000015528	ENSGT00940000162489	ENSGT00390000013678	ENSGT00390000001390.b #36	ENSGT00530000063870.b #35	ENSGT01100000263515.a.b.a.b.a.h #34	ENSGT00990000204060	ENSGT00930000151045.e	ENSGT00950000182933.B.a.a #18	ENSGT00940000153820.b.b #19	ENSGT00940000158312.e #20	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000153470.a.b.a	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00950000183193.A.c.b #16	ENSGT01030000234629.E.a.b ##15	ENSGT00530000063937.b	ENSGT00940000153496.a.a.p	ENSGT00940000165198 #14	ENSGT00390000007652	ENSGT00390000003337	ENSGT00940000158171	ENSGT00390000006617.a	ENSGT00390000014840.a	ENSGT00940000160875.i
Asian bonytongue	MODERN SPECIES	12	telo2 (ENSSFOG00015018557)	tmem204 (ENSSFOG00015026313)	ENSSFOG00015029981	ENSSFOG00015018518	ENSSFOG00015018443	metrn (ENSSFOG00015024644) #36	PRR35 (ENSSFOG00015018389) #35	crp2 (ENSSFOG00015018373) #34	ENSSFOG00015018358	STUB1 (ENSSFOG00015032771)	ENSSFOG00015018333 #18	ENSSFOG00015018324 #18	MSS51 (ENSSFOG00015018291) #19	CAPN15 (ENSSFOG00015018233) #20	ENSSFOG00015018202	nog2 (ENSSFOG00015018190) #22	ntn2 (ENSSFOG00015017974) #23	ENSSFOG00015017874	TBC1D24 (ENSSFOG00015017859) #17	atp6v0ca (ENSSFOG00015025963)	nubp2 (ENSSFOG00015017820) #16	spsb3a (ENSSFOG00015026406) ##15	mapk8ip3 (ENSSFOG00015017726)	ENSSFOG00015017686 #14	jpt2 (ENSSFOG00015017678)	CRAMP1 (ENSSFOG00015017473)	dhrs7b (ENSSFOG00015017425)	tmem11 (ENSSFOG00015031133)	natd1 (ENSSFOG00015017400)	MAP2K3 (ENSSFOG00015017361)	KCNJ18 (ENSSFOG00015017347) ##12
P. kingsleyae	MODERN SPECIES	170					ENSPKIG00000007751	ENSPKIG00000007762	ENSPKIG00000007785	metrn (ENSPKIG00000007811) #36	ENSPKIG00000007838 #35	crp2 (ENSPKIG00000007863) #34	STUB1 (ENSPKIG00000007913)	ENSPKIG00000007954	MSS51 (ENSPKIG00000007982) #19	CAPN15 (ENSPKIG00000008024) #20	ENSPKIG00000008143	nog2 (ENSPKIG00000008324) #22	ntn2 (ENSPKIG00000008341) #23	ENSPKIG00000008390	TBC1D24 (ENSPKIG00000008441) #17	ATP6V0C (ENSPKIG00000008460)	nubp2 (ENSPKIG00000008473) #16	spsb3a (ENSPKIG00000008502) ##15	EME2 (ENSPKIG00000008539)	mapk8ip3 (ENSPKIG00000008596)	ENSPKIG00000008645 #14	jpt2 (ENSPKIG00000008686)	CRAMP1 (ENSPKIG00000008706)	dhrs7b (ENSPKIG00000008762)	tmem11 (ENSPKIG00000008790)	natd1 (ENSPKIG00000008830)	MAP2K3 (ENSPKIG00000008897)
Spotted gar	MODERN SPECIES	651							ENSLOCG00000009097	myh11a (ENSLOCG00000009053)	JMJD8 (ENSLOCG00000009043)	STUB1 (ENSLOCG00000009032)	ENSLOCG00000009022 #18	ENSLOCG00000009011	CAPN15 (ENSLOCG00000009003) #20	amdhd2 (ENSLOCG00000008993)	ENSLOCG00000008981	nog2 (ENSLOCG00000018109) #22	ntn2 (ENSLOCG00000008971) #23	ENSLOCG00000008962	ENSLOCG00000008951 ##17	atp6v0ca (ENSLOCG00000008943)	msrb1b (ENSLOCG00000008938)	ENSLOCG00000008925	RPL3L (ENSLOCG00000008905)	ndufb10 (ENSLOCG00000008898)	rps2 (ENSLOCG00000008889)	RNF151 (ENSLOCG00000008879)	tbl3 (ENSLOCG00000008853)	noxo1b (ENSLOCG00000008840)	GID4 (ENSLOCG00000008829)	atpaf2 (ENSLOCG00000008821)	drc3 (ENSLOCG00000008811)
Reedfish	MODERN SPECIES	2	rhbdl1 (ENSECRG00000015769)	zgc:112496 (ENSECRG00000015836)	wdr24 (ENSECRG00000015877)	IGFALS (ENSECRG00000015939)	anks3 (ENSECRG00000015954)	zgc:112185 (ENSECRG00000015990)	gper1 (ENSECRG00000016013)	ENSECRG00000016023	ENSECRG00000016040	ENSECRG00000016054	ENSECRG00000016068	CAPN15 (ENSECRG00000016112) #20	amdhd2 (ENSECRG00000016144)	ENSECRG00000016163	ENSECRG00000016193	nog2 (ENSECRG00000016212) #22	ADCY9 (ENSECRG00000016258)	ENSECRG00000016338	srl (ENSECRG00000016425)	hmox2a (ENSECRG00000016476)	dnaja3b (ENSECRG00000016661)	coro7 (ENSECRG00000016881)	ENSECRG00000016937	ENSECRG00000016958	vasna (ENSECRG00000016972)	pam16 (ENSECRG00000016983)	glis2b (ENSECRG00000017000)	ENSECRG00000017028	gde1 (ENSECRG00000017061)	TFAP4 (ENSECRG00000017077)	alg1 (ENSECRG00000017106)
Sarcopterygii	ANCESTRAL SPECIES	139	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873
Tetrapoda	ANCESTRAL SPECIES	53	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Amniota	ANCESTRAL SPECIES	11	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a
Mammalia	ANCESTRAL SPECIES	43	ENSGT00940000157022	ENSGT00940000158025.a.a.b	ENSGT00390000014852.b	ENSGT00390000014795	ENSGT00930000150969.B	ENSGT00940000160577	ENSGT00840000129970	ENSGT00950000182846.b.r	ENSGT00390000005678	ENSGT00730000111029	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748
Platypus	MODERN SPECIES	11	CASKIN1 (ENSOANG00000038157)	ENSOANG00000048014	ENSOANG00000044517	MLST8 (ENSOANG00000002189)	ENSOANG00000045341	PGP (ENSOANG00000005774)	E4F1 (ENSOANG00000007784)	DNASE1L2 (ENSOANG00000037179)	ECI1 (ENSOANG00000037130)	RNPS1 (ENSOANG00000044746)	ABCA3 (ENSOANG00000049481)	ENSOANG00000048610	CCNF (ENSOANG00000002720)	ENSOANG00000044412	ENSOANG00000049499	ENSOANG00000047672 #22	NTN3 (ENSOANG00000048273) #23	TBC1D24 (ENSOANG00000011160) #17	AMDHD2 (ENSOANG00000013604)	ENSOANG00000048442	ENSOANG00000040080	PPL (ENSOANG00000038492)	GLYR1 (ENSOANG00000045962)	ROGDI (ENSOANG00000004980)	ENSOANG00000040204	SEPTIN12 (ENSOANG00000004266)	ENSOANG00000036978	SSTR5 (ENSOANG00000009657)	SOX8 (ENSOANG00000040462)	LMF1 (ENSOANG00000013038)	TTF2 (ENSOANG00000001132)
Sauria	ANCESTRAL SPECIES	12	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Lepidosauria	ANCESTRAL SPECIES	77	ENSGT00940000160286	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00810000125541	ENSGT00960000188184	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
tuatara	MODERN SPECIES	1956																ENSSPUG00000015078 #22	ENSSPUG00000015100 #23
Episquamata	ANCESTRAL SPECIES	8	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Laterata	ANCESTRAL SPECIES	23	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Common wall lizard	MODERN SPECIES	5	PRR35 (ENSPMRG00000014844) #35	ENSPMRG00000014848 ##35	PIGQ (ENSPMRG00000014855)	ENSPMRG00000014865	RAB40C (ENSPMRG00000014870)	WFIKKN1 (ENSPMRG00000014877)	METTL26 (ENSPMRG00000014881)	MCRIP2 (ENSPMRG00000014890)	ABCA3 (ENSPMRG00000014903)	ENSPMRG00000014928	CCNF (ENSPMRG00000014954)	ENSPMRG00000014970	ENSPMRG00000014982	ENSPMRG00000014992	ENSPMRG00000015006	ENSPMRG00000015010 #22	NTN3 (ENSPMRG00000015014) #23	TBC1D24 (ENSPMRG00000015023) #17	ATP6V0C (ENSPMRG00000015036)	AMDHD2 (ENSPMRG00000015040)	ENSPMRG00000015048	ENSPMRG00000015055	RNPS1 (ENSPMRG00000015064)	TELO2 (ENSPMRG00000015079)	IFT140 (ENSPMRG00000015105)	TMEM204 (ENSPMRG00000015121)	CRAMP1 (ENSPMRG00000015163)	JPT2 (ENSPMRG00000015358)	ENSPMRG00000015373 #14	MAPK8IP3 (ENSPMRG00000015527)	ENSPMRG00000016617
Argentine black and white tegu	MODERN SPECIES	50	RAB11FIP3 (ENSSMRG00000014015)	CAPN15 (ENSSMRG00000014017) #20	PRR35 (ENSSMRG00000014018) #35	NHLRC4 (ENSSMRG00000014019) ##35	PIGQ (ENSSMRG00000014020)	RAB40C (ENSSMRG00000014021)	WFIKKN1 (ENSSMRG00000014022)	METTL26 (ENSSMRG00000014023)	MCRIP2 (ENSSMRG00000014024)	ABCA3 (ENSSMRG00000014025)	ENSSMRG00000016624	CCNF (ENSSMRG00000016625)	ENSSMRG00000016708	ENSSMRG00000016710	ENSSMRG00000016713	ENSSMRG00000016714 #22	NTN3 (ENSSMRG00000016718) #23	TBC1D24 (ENSSMRG00000016720) #17	ATP6V0C (ENSSMRG00000016724)	AMDHD2 (ENSSMRG00000016727)	ENSSMRG00000016733	ENSSMRG00000016735	RNPS1 (ENSSMRG00000016741)	TELO2 (ENSSMRG00000016744)	IFT140 (ENSSMRG00000016747)	TMEM204 (ENSSMRG00000016754)	CRAMP1 (ENSSMRG00000016756)	JPT2 (ENSSMRG00000016763)	ENSSMRG00000016765 #14	MAPK8IP3 (ENSSMRG00000016766)	GNPTG (ENSSMRG00000016775)
Toxicofera	ANCESTRAL SPECIES	14	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Elapidae	ANCESTRAL SPECIES	1	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b.a	ENSGT00940000155289.C.b.b	ENSGT00940000158111	ENSGT00810000125541.j	ENSGT00960000188184	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a.k.a	ENSGT00940000161283
Elapidae_a	ANCESTRAL SPECIES	21	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b.a	ENSGT00940000158111	ENSGT00810000125541.i	ENSGT00810000125541.j	ENSGT00960000188184	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a.l	ENSGT00940000153496.a.a.k.a
Acanthophiinae	ANCESTRAL SPECIES	28	ENSGT00390000002810	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b.a	ENSGT00940000158111	ENSGT00810000125541.j	ENSGT00960000188184	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a.o #23	ENSGT00940000153882.a.b.b.a.p #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a.k.a	ENSGT00940000161283
Mainland tiger snake	MODERN SPECIES	139	CAPN15 (ENSNSUG00000000323) #20	PRR35 (ENSNSUG00000000338) #35	NHLRC4 (ENSNSUG00000000346) ##35	PIGQ (ENSNSUG00000000352)	ENSNSUG00000000378	WFIKKN1 (ENSNSUG00000000379)	METTL26 (ENSNSUG00000000386)	ENSNSUG00000000393	ENSNSUG00000000399	ENSNSUG00000000421	ENSNSUG00000000423	VRK3 (ENSNSUG00000000426)	CCNF (ENSNSUG00000000453)	ENSNSUG00000001145	ENSNSUG00000001149 #21	ENSNSUG00000001150 #22	ENSNSUG00000001152 #23
Eastern brown snake	MODERN SPECIES	1058																ENSPTXG00000017058 #22
Blue-lipped sea krait	MODERN SPECIES	6681																ENSLLTG00000007835 #22
Indian cobra	MODERN SPECIES	15	CAPN15 (ENSNNAG00000009875) #20	PRR35 (ENSNNAG00000009936) #35	NHLRC4 (ENSNNAG00000009973) ##35	PIGQ (ENSNNAG00000009997)	RAB40C (ENSNNAG00000010035)	METTL26 (ENSNNAG00000010063)	ENSNNAG00000010143	ENSNNAG00000010178	ENSNNAG00000010216	ENSNNAG00000010239	ENSNNAG00000010326	ENSNNAG00000010366	ENSNNAG00000010406	ENSNNAG00000010426	ENSNNAG00000010489	ENSNNAG00000010511 #22	ENSNNAG00000010530 #23	ENSNNAG00000010560 #23	TBC1D24 (ENSNNAG00000010569) #17	ATP6V0C (ENSNNAG00000010675)	AMDHD2 (ENSNNAG00000010690)	ENSNNAG00000010703	ENSNNAG00000010733	RNPS1 (ENSNNAG00000010787)	TELO2 (ENSNNAG00000010841)	IFT140 (ENSNNAG00000010928)	TMEM204 (ENSNNAG00000011111)	CRAMP1 (ENSNNAG00000011152)	JPT2 (ENSNNAG00000011619)	ENSNNAG00000011647 #14	MAPK8IP3 (ENSNNAG00000011680)
Lizard	MODERN SPECIES	1409															ENSACAG00000000701 #21	ENSACAG00000000697 #22	ENSACAG00000026330 #18	ENSACAG00000000531
Archelosauria	ANCESTRAL SPECIES	12	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Cryptodira	ANCESTRAL SPECIES	12	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00940000153801.a	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000169160	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000153496.a.a	ENSGT00940000161283	ENSGT00390000008964
Goode s thornscrub tortoise	MODERN SPECIES	150													ENSGEVG00005020593	ENSGEVG00005020584	ENSGEVG00005020578	ENSGEVG00005020573 #22	NTN3 (ENSGEVG00005020542) #23	TBC1D24 (ENSGEVG00005020527) #17	ATP6V0C (ENSGEVG00005020520)	AMDHD2 (ENSGEVG00005020506)	ENSGEVG00005020500	ENSGEVG00005020496	ENSGEVG00005020489	RNPS1 (ENSGEVG00005020485)	TELO2 (ENSGEVG00005020464)	IFT140 (ENSGEVG00005020453)	TMEM204 (ENSGEVG00005020450)	ENSGEVG00005020445	CRAMP1 (ENSGEVG00005020435)	JPT2 (ENSGEVG00005020431)	MAPK8IP3 (ENSGEVG00005020417)
Abingdon island giant tortoise	MODERN SPECIES	2094	RAB11FIP3 (ENSCABG00000009419)	CAPN15 (ENSCABG00000009422) #20	PRR35 (ENSCABG00000009426) #35	NHLRC4 (ENSCABG00000009427) ##35	PIGQ (ENSCABG00000009429)	RAB40C (ENSCABG00000009434)	WFIKKN1 (ENSCABG00000009442)	METTL26 (ENSCABG00000009443)	ENSCABG00000009444	ABCA3 (ENSCABG00000009476)	VRK3 (ENSCABG00000011426)	CCNF (ENSCABG00000011438)	ENSCABG00000011456	ENSCABG00000011457	ENSCABG00000011459	ENSCABG00000011464 #22	NTN3 (ENSCABG00000011467) #23	ENSCABG00000011477 #17	ENSCABG00000011480 #17	ATP6V0C (ENSCABG00000011485)	AMDHD2 (ENSCABG00000011487)	ENSCABG00000011493
Emydidae	ANCESTRAL SPECIES	38	ENSGT00440000033742.a.a	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Three-toed box turtle	MODERN SPECIES	27	CAPN15 (ENSTMTG00000002220) #20	NHLRC4 (ENSTMTG00000002234) ##35	PIGQ (ENSTMTG00000002241)	RAB40C (ENSTMTG00000002260)	WFIKKN1 (ENSTMTG00000002264)	METTL26 (ENSTMTG00000002269)	MCRIP2 (ENSTMTG00000002272)	ABCA3 (ENSTMTG00000002280)	VRK3 (ENSTMTG00000002312)	CCNF (ENSTMTG00000002342)	ENSTMTG00000002544	ENSTMTG00000002576	ENSTMTG00000002599	ENSTMTG00000002603	ENSTMTG00000002613	ENSTMTG00000002619 #22	NTN3 (ENSTMTG00000002631) #23	TBC1D24 (ENSTMTG00000002655) #17	ATP6V0C (ENSTMTG00000002661)	AMDHD2 (ENSTMTG00000002663)	ENSTMTG00000002669	ENSTMTG00000002673	RNPS1 (ENSTMTG00000002680)	TELO2 (ENSTMTG00000002686)	IFT140 (ENSTMTG00000002716)	TMEM204 (ENSTMTG00000002748)	CRAMP1 (ENSTMTG00000002756)	JPT2 (ENSTMTG00000002778)	ENSTMTG00000002786 #14	MAPK8IP3 (ENSTMTG00000002806)	SPSB3 (ENSTMTG00000002888) ##15
painted turtle	MODERN SPECIES	840	SIRT2 (ENSCPBG00000018928)	ENSCPBG00000018926	ENSCPBG00000018924	ENSCPBG00000018922	HNRNPL (ENSCPBG00000018919)	ECH1 (ENSCPBG00000018915)	ENSCPBG00000018913	TIMM50 (ENSCPBG00000018911)	SUPT5H (ENSCPBG00000018792)	ENSCPBG00000018764	ENSCPBG00000018758	ENSCPBG00000018757	ENSCPBG00000018754	ZFP36 (ENSCPBG00000018753)	ENSCPBG00000018747	ENSCPBG00000018745 #22	ENSCPBG00000018741 #23	LGALS4 (ENSCPBG00000018739)	ENSCPBG00000018737	ENSCPBG00000018734	ENSCPBG00000018733	ENSCPBG00000018731	ACTN4 (ENSCPBG00000018719)
Chinese turtle	MODERN SPECIES	405															ENSPSIG00000002850	ENSPSIG00000001526 #22
Archosauria	ANCESTRAL SPECIES	8	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a
Australian saltwater crocodile	MODERN SPECIES	42	RAB11FIP3 (ENSCPRG00005002218)	CAPN15 (ENSCPRG00005002197) #20	PRR35 (ENSCPRG00005002193) #35	NHLRC4 (ENSCPRG00005002189) ##35	PIGQ (ENSCPRG00005002185)	RAB40C (ENSCPRG00005002182)	WFIKKN1 (ENSCPRG00005002180)	METTL26 (ENSCPRG00005002175)	ENSCPRG00005002172	ABCA3 (ENSCPRG00005001053)	VRK3 (ENSCPRG00005000919)	CCNF (ENSCPRG00005000914)	ENSCPRG00005000887	ENSCPRG00005000882	ENSCPRG00005000862	ENSCPRG00005000850 #22	NTN3 (ENSCPRG00005000848) #23	TBC1D24 (ENSCPRG00005000819) #17	ATP6V0C (ENSCPRG00005000800)	AMDHD2 (ENSCPRG00005000778)	ENSCPRG00005000774	ENSCPRG00005000767	ENSCPRG00005000750	RNPS1 (ENSCPRG00005000740)	ENSCPRG00005000734	TELO2 (ENSCPRG00005000645)	TMEM204 (ENSCPRG00005000627)	IFT140 (ENSCPRG00005000596)	CRAMP1 (ENSCPRG00005000537)	JPT2 (ENSCPRG00005000524)	ENSCPRG00005000516 #14
Aves	ANCESTRAL SPECIES	11	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a
Neognathae	ANCESTRAL SPECIES	10	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00390000008964
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00390000008964
Golden eagle	MODERN SPECIES	17	CAPN15 (ENSACCG00020011968) #20	PRR35 (ENSACCG00020012015) #35	NHLRC4 (ENSACCG00020012039) ##35	PIGQ (ENSACCG00020012092)	RAB40C (ENSACCG00020012124)	WFIKKN1 (ENSACCG00020012152)	METTL26 (ENSACCG00020012192)	MCRIP2 (ENSACCG00020012225)	ABCA3 (ENSACCG00020012299)	ENSACCG00020012385	VRK3 (ENSACCG00020012408)	CCNF (ENSACCG00020012443)	ENSACCG00020012489	ENSACCG00020012521	ENSACCG00020012557	ENSACCG00020012582 #22	NTN3 (ENSACCG00020012598) #23	TBC1D24 (ENSACCG00020012625) #17	ATP6V0C (ENSACCG00020012647)	AMDHD2 (ENSACCG00020012667)	ENSACCG00020012693	ENSACCG00020012723	RNPS1 (ENSACCG00020012750)	TELO2 (ENSACCG00020012870)	IFT140 (ENSACCG00020012976)	TMEM204 (ENSACCG00020013019)	CRAMP1 (ENSACCG00020013142)	JPT2 (ENSACCG00020013182)	ENSACCG00020013199 #14	MAPK8IP3 (ENSACCG00020013368)	MRPS34 (ENSACCG00020013505)
Kakapo	MODERN SPECIES	21	CAPN15 (ENSSHBG00005003360) #20	PRR35 (ENSSHBG00005003328) #35	ENSSHBG00005003314 ##35	PIGQ (ENSSHBG00005003297)	RAB40C (ENSSHBG00005003282)	WFIKKN1 (ENSSHBG00005003261)	METTL26 (ENSSHBG00005003248)	MCRIP2 (ENSSHBG00005003235)	ABCA3 (ENSSHBG00005003198)	VRK3 (ENSSHBG00005003160)	CCNF (ENSSHBG00005003125)	ENSSHBG00005003075	ENSSHBG00005003053	ENSSHBG00005003019	ENSSHBG00005002999	ENSSHBG00005002981 #22	ENSSHBG00005002966 #23	ENSSHBG00005002948 #23	TBC1D24 (ENSSHBG00005002922) #17	ATP6V0C (ENSSHBG00005002891)	AMDHD2 (ENSSHBG00005002855)	ENSSHBG00005002834	RNPS1 (ENSSHBG00005002789)	TELO2 (ENSSHBG00005002465)	TMEM204 (ENSSHBG00005002323)	IFT140 (ENSSHBG00005002216)	CRAMP1 (ENSSHBG00005001854)	JPT2 (ENSSHBG00005001530)	MAPK8IP3 (ENSSHBG00005001493)	MRPS34 (ENSSHBG00005001465)	GLYR1 (ENSSHBG00005000522)
Passeriformes	ANCESTRAL SPECIES	11	ENSGT00390000007535	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00730000111029	ENSGT00390000006698	ENSGT00390000015528	ENSGT00940000153417.A	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000153496.a.a	ENSGT00390000008964	ENSGT00940000156435	ENSGT00390000007164
Great tit	MODERN SPECIES	5	CAPN15 (ENSPMJG00000008349) #20	ENSPMJG00000008348 #35	NHLRC4 (ENSPMJG00000008347) ##35	PIGQ (ENSPMJG00000008346)	RAB40C (ENSPMJG00000008345)	WFIKKN1 (ENSPMJG00000008344)	ENSPMJG00000008341	MCRIP2 (ENSPMJG00000008337)	ABCA3 (ENSPMJG00000008330)	VRK3 (ENSPMJG00000008266)	CCNF (ENSPMJG00000008262)	ENSPMJG00000008261	ENSPMJG00000008260	ENSPMJG00000008254	ENSPMJG00000008237	ENSPMJG00000008236 #22	NTN3 (ENSPMJG00000008235) #23	TBC1D24 (ENSPMJG00000008229) #17	ATP6V0C (ENSPMJG00000008221)	AMDHD2 (ENSPMJG00000008220)	ENSPMJG00000008219	RNPS1 (ENSPMJG00000008216)	TELO2 (ENSPMJG00000008213)	TMEM204 (ENSPMJG00000008210)	IFT140 (ENSPMJG00000008203)	CRAMP1 (ENSPMJG00000008175)	MAPK8IP3 (ENSPMJG00000008136)	MRPS34 (ENSPMJG00000008135)	GLYR1 (ENSPMJG00000008130)	ROGDI (ENSPMJG00000008129)
Galloanserae	ANCESTRAL SPECIES	9	ENSGT00390000007535	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652
Anatidae	ANCESTRAL SPECIES	7	ENSGT00940000158312 #20	ENSGT00530000063870.b #35	ENSGT00530000063870.a.b ##35	ENSGT00390000004994	ENSGT00940000158979	ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C.b	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00940000159856	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00940000161283	ENSGT00530000063937.b	ENSGT01030000234629.E.a.b ##15	ENSGT00950000183193.A.c.b #16	ENSGT00940000160824	ENSGT00390000013678	ENSGT00390000014771.b.a	ENSGT00390000001390.b #36	ENSGT00940000159138	ENSGT00490000044657	ENSGT00940000159396	ENSGT00390000015438	ENSGT00930000151045	ENSGT00940000160651
Pink-footed goose	MODERN SPECIES	61	NDUFB6 (ENSABRG00000002243)	CAPN15 (ENSABRG00000002221) #20	PRR35 (ENSABRG00000002211) #35	ENSABRG00000002208 ##35	PIGQ (ENSABRG00000002180)	RAB40C (ENSABRG00000002164)	WFIKKN1 (ENSABRG00000002159)	ENSABRG00000002154	MCRIP2 (ENSABRG00000002124)	ABCA3 (ENSABRG00000001976)	VRK3 (ENSABRG00000001911)	CCNF (ENSABRG00000001555)	ENSABRG00000001526	ENSABRG00000001499	ENSABRG00000001324	ENSABRG00000001297 #22	NTN3 (ENSABRG00000001282) #23	NME3 (ENSABRG00000001119)	EME2 (ENSABRG00000001095)	SPSB3 (ENSABRG00000001056) ##15	NUBP2 (ENSABRG00000001033) #16	IGFALS (ENSABRG00000001017)	ENSABRG00000000969	ANTKMT (ENSABRG00000000947)	METRN (ENSABRG00000000928) #36	ENSABRG00000000908	FBXL16 (ENSABRG00000000890)	ENSABRG00000000881	WDR24 (ENSABRG00000000814)	ENSABRG00000022907	RHBDL1 (ENSABRG00000022906)
Duck	MODERN SPECIES	6	C16orf89 (ENSAPLG00000004102)	ENSAPLG00000004058	CAPN15 (ENSAPLG00000003550) #20	ENSAPLG00000027514	PIGQ (ENSAPLG00000004511)	RAB40C (ENSAPLG00000004049)	WFIKKN1 (ENSAPLG00000020792)	ENSAPLG00000022464	MCRIP2 (ENSAPLG00000003848)	ABCA3 (ENSAPLG00000002878)	ENSAPLG00000008922	CCNF (ENSAPLG00000008947)	ENSAPLG00000026089	ENSAPLG00000022804	ENSAPLG00000007522	ENSAPLG00000020873 #22	NTN3 (ENSAPLG00000020398) #23	SPSB3 (ENSAPLG00000005074) ##15	NUBP2 (ENSAPLG00000004901) #16	IGFALS (ENSAPLG00000004854)	CCDC78 (ENSAPLG00000004763)	ANTKMT (ENSAPLG00000020960)	METRN (ENSAPLG00000024043) #36	ENSAPLG00000002966	CFAP70 (ENSAPLG00000002851)	MSS51 (ENSAPLG00000002712) #19	ENSAPLG00000002398	RAB11FIP3 (ENSAPLG00000007552)	DECR2 (ENSAPLG00000007534)	ENSAPLG00000029583	XPO6 (ENSAPLG00000007480)
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00950000182961.b	ENSGT00940000159473	ENSGT00940000160939	ENSGT00940000161148	ENSGT00940000157930.f.b.a	ENSGT01050000244841.A.b.a.b.b	ENSGT00390000007164	ENSGT00940000156435	ENSGT00390000008964	ENSGT00940000153496.a.a	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000017704	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000155289.C.b	ENSGT00940000160332
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00950000182961.b	ENSGT00940000159473	ENSGT00940000160939	ENSGT00940000161148	ENSGT00940000157930.f.b.a	ENSGT01050000244841.A.b.a.b.b	ENSGT00390000007164	ENSGT00940000156435	ENSGT00390000008964	ENSGT00940000153496.a.a	ENSGT00940000158111	ENSGT00810000125541	ENSGT00960000188184	ENSGT00390000011149	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000155289.C.b	ENSGT00940000160332	ENSGT00940000158031
Chicken	MODERN SPECIES	5	GLYR1 (ENSGALG00010019586)	MRPS34 (ENSGALG00010016527)	MAPK8IP3 (ENSGALG00010016474)	ENSGALG00010017637	ENSGALG00010017630	ENSGALG00010017623	ENSGALG00010017617	ENSGALG00010017614	ENSGALG00010017611	ENSGALG00010017607	ENSGALG00010017601	CCNF (ENSGALG00010017595)	ENSGALG00010017590	ENSGALG00010017585	ENSGALG00010017565	NOG2 (ENSGALG00010019318) #22	ENSGALG00010017523	NTN3 (ENSGALG00010017519) #23	TBC1D24 (ENSGALG00010017494) #17	ATP6V0C (ENSGALG00010017476)	AMDHD2 (ENSGALG00010017468)	ENSGALG00010017458	ENSGALG00010017450	RNPS1 (ENSGALG00010017433)	TELO2 (ENSGALG00010017429)	TMEM204 (ENSGALG00010017423)	IFT140 (ENSGALG00010017406)	CRAMP1 (ENSGALG00010017391)	JPT2 (ENSGALG00010019278)	ENSGALG00010018881	ABCA3 (ENSGALG00010018864)
Japanese quail	MODERN SPECIES	5	GPRC5B (ENSCJPG00005018503)	GPR139 (ENSCJPG00005018502)	PDILT (ENSCJPG00005018501)	ACSM5 (ENSCJPG00005018499)	ENSCJPG00005018497	ENSCJPG00005018496	ROGDI (ENSCJPG00005018495)	GLYR1 (ENSCJPG00005018494)	MRPS34 (ENSCJPG00005018493)	MAPK8IP3 (ENSCJPG00005018461)	ENSCJPG00005018460	CCNF (ENSCJPG00005018459)	ENSCJPG00005018458	ENSCJPG00005018457	ENSCJPG00005018456	ENSCJPG00005018455 #22	NTN3 (ENSCJPG00005018454) #23	TBC1D24 (ENSCJPG00005018452) #17	ATP6V0C (ENSCJPG00005018451)	AMDHD2 (ENSCJPG00005018450)	ENSCJPG00005018449	RNPS1 (ENSCJPG00005018448)	ENSCJPG00005018447	TELO2 (ENSCJPG00005018346)	TMEM204 (ENSCJPG00005018338)	IFT140 (ENSCJPG00005018011)	CRAMP1 (ENSCJPG00005017886)	JPT2 (ENSCJPG00005017885)	ABCA3 (ENSCJPG00005017457)	MCRIP2 (ENSCJPG00005017454)	WFIKKN1 (ENSCJPG00005017453)
Anura	ANCESTRAL SPECIES	138									ENSGT00940000158031	ENSGT00390000010750.a	ENSGT00940000160332	ENSGT00940000155289.C	ENSGT00810000125541	ENSGT00960000188184	ENSGT00940000163984.B	ENSGT00390000006009.a.a.b #22	ENSGT00940000153882.a.b.b.a #23	ENSGT00410000025739.c.a #17	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00530000066748	ENSGT00730000111029	ENSGT00390000006698	ENSGT00940000153417.A	ENSGT00390000015528	ENSGT00390000003337	ENSGT00390000007652	ENSGT00940000165198 #14	ENSGT00940000153496.a.a	ENSGT00940000161283
Leishan spiny toad	MODERN SPECIES	10	SMCR8 (ENSLLEG00000016444)	SHMT1 (ENSLLEG00000030452)	HS3ST2 (ENSLLEG00000030437)	USP31 (ENSLLEG00000030409)	SCNN1G (ENSLLEG00000030394)	SCNN1B (ENSLLEG00000030368)	COG7 (ENSLLEG00000030337)	EARS2 (ENSLLEG00000030320)	ENSLLEG00000030310	WFIKKN1 (ENSLLEG00000030304)	RAB40C (ENSLLEG00000030278)	ABCA3 (ENSLLEG00000030222)	ENSLLEG00000030201	CCNF (ENSLLEG00000030133)	ENSLLEG00000030058	ENSLLEG00000030046 #22	NTN3 (ENSLLEG00000029993) #23	TBC1D24 (ENSLLEG00000029966) #17	ATP6V0C (ENSLLEG00000029953)	AMDHD2 (ENSLLEG00000029925)	ENSLLEG00000029900	ENSLLEG00000029861	RNPS1 (ENSLLEG00000029820)	ENSLLEG00000029800	TELO2 (ENSLLEG00000029748)	TMEM204 (ENSLLEG00000029727)	IFT140 (ENSLLEG00000029565)	CRAMP1 (ENSLLEG00000029510)	JPT2 (ENSLLEG00000029452)	ENSLLEG00000029330 #14	ENSLLEG00000029277 #14
Frog	MODERN SPECIES	9	scnn1b (ENSXETG00000027567)	cog7 (ENSXETG00000012431)	ears2 (ENSXETG00000012433)	ubfd1 (ENSXETG00000031242)	rab40c (ENSXETG00000042241)	mapk8ip3 (ENSXETG00000034183)	XB5829846 [provisional:mfsd1] (ENSXETG00000012456) #14	ccnf (ENSXETG00000012459)	ENSXETG00000039949	ENSXETG00000037929	ENSXETG00000033514	ENSXETG00000044134	tedc2 (ENSXETG00000032467)	ENSXETG00000046637	ankfn1l (ENSXETG00000020302)	nog2 (ENSXETG00000020301) #22	ENSXETG00000048065	ntn3 (ENSXETG00000020288) #23	tbc1d24.1 (ENSXETG00000020284) #17	amdhd2 (ENSXETG00000020279)	c8orf33 (ENSXETG00000024441)	MGC145260 (ENSXETG00000032294)	rnps1 (ENSXETG00000024439)	ENSXETG00000041233	wfikkn1 (ENSXETG00000020260)	mettl26 (ENSXETG00000034718)	mcrip2 (ENSXETG00000020259)	abca3 (ENSXETG00000020232)	jpt2 (ENSXETG00000034338)	mrps34 (ENSXETG00000020229)	cramp1 (ENSXETG00000020224)
Coelacanth	MODERN SPECIES	1496																nog2 (ENSLACG00000011270) #22	ENSLACG00000010705	ENSLACG00000007335	ntn2 (ENSLACG00000005023) #23
Elephant shark	MODERN SPECIES	1515	ENSCMIG00000007160	mfsd13al (ENSCMIG00000007166)	CDR2 (ENSCMIG00000007169)	polr3e (ENSCMIG00000007218)	eef2k (ENSCMIG00000007346)	SDR42E2 (ENSCMIG00000007358)	ENSCMIG00000007380	mosmob (ENSCMIG00000007405)	ABCA3 (ENSCMIG00000007460)	ccnf (ENSCMIG00000007544)	ENSCMIG00000007574	ENSCMIG00000007580	ENSCMIG00000007586	ENSCMIG00000007588	ENSCMIG00000007591 #21	nog2 (ENSCMIG00000007592) #22	ntn2 (ENSCMIG00000007596) #23	ENSCMIG00000007604	TBC1D24 (ENSCMIG00000007610) #17	atp6v0c (ENSCMIG00000007616)	trap1 (ENSCMIG00000007667)	CREBBP (ENSCMIG00000007859)	ADCY9 (ENSCMIG00000007993)	srl (ENSCMIG00000007996)	TFAP4 (ENSCMIG00000008004)	glis2b (ENSCMIG00000008007)	pam16 (ENSCMIG00000008008)	ENSCMIG00000008010 #20	ENSCMIG00000008012	ENSCMIG00000008014 #20	amdhd2 (ENSCMIG00000008019)
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000006009.a.a.b.i #22
Lamprey	MODERN SPECIES	3572																nog2 (ENSPMAG00000010340) #22
Cyclostomata	ANCESTRAL SPECIES	279														ENSGT00940000163984.B	ENSGT00940000163071 #21	ENSGT00390000006009.a.a.b.j #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	359																nog2 (ENSEBUG00000009683) #22	metrnla (ENSEBUG00000003953) #36	ENSEBUG00000016555	ENSEBUG00000006199	ENSEBUG00000000503	ENSEBUG00000001159	COG7 (ENSEBUG00000014445)	ENSEBUG00000015921	cyp1a (ENSEBUG00000012252)	ENSEBUG00000007139
Hagfish	MODERN SPECIES	762	ENSEBUG00000016126	ENSEBUG00000005815	ENSEBUG00000012206	ENSEBUG00000014190	ENSEBUG00000012690	ENSEBUG00000016156	ENSEBUG00000013138	ENSEBUG00000006841	ENSEBUG00000004388	ENSEBUG00000006155	ENSEBUG00000006134	ENSEBUG00000014278	ENSEBUG00000010121	ENSEBUG00000015086	ENSEBUG00000014850 #21	nog2 (ENSEBUG00000002882) #22	ENSEBUG00000009000	ENSEBUG00000009985	ENSEBUG00000002010	COPS3 (ENSEBUG00000008944)	ENSEBUG00000008939	ENSEBUG00000011702	ENSEBUG00000011781	capn7 (ENSEBUG00000012758)	ENSEBUG00000015355	ENSEBUG00000010422	ENSEBUG00000005282	ENSEBUG00000011691	slc48a1a (ENSEBUG00000001123)	VPS50 (ENSEBUG00000009850)	ENSEBUG00000008571
Lamprey	MODERN SPECIES	4938																ENSPMAG00000010439 #22