Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161569 #8	ENSGT00940000153840.a.a #9	ENSGT00440000033919 #10	ENSGT00940000155223.b #11	ENSGT00940000163180 #12	ENSGT00940000160240 #13	ENSGT00390000007512 #14	ENSGT00390000002226 #15	ENSGT00940000156555 #16	ENSGT00940000157428 #17	ENSGT00980000198588 #18	ENSGT00940000154322.A #19	ENSGT00940000156843 #20	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #26	ENSGT00390000004832 #27	ENSGT00940000156193 #28	ENSGT00390000001360 #29	ENSGT00940000155420.b #30	ENSGT00390000014787 #31	ENSGT00390000009030 #32	ENSGT00390000006762 #33	ENSGT00940000155932 #34	ENSGT00940000155585 #35	ENSGT00390000000378.d.a #36	ENSGT00940000154503.b #37	ENSGT00940000154503.a ##37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000161569 #8	ENSGT00940000153840.a.a #9	ENSGT00440000033919 #10	ENSGT00940000155223.b #11	ENSGT00940000163180 #12	ENSGT00940000160240 #13	ENSGT00390000007512 #14	ENSGT00390000002226 #15	ENSGT00940000156555 #16	ENSGT00940000157428 #17	ENSGT00980000198588 #18	ENSGT00940000154322.A #19	ENSGT00940000156843 #20	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #26	ENSGT00390000004832 #27	ENSGT00940000156193 #28	ENSGT00390000001360 #29	ENSGT00940000155420.b #30	ENSGT00390000014787 #31	ENSGT00390000009030 #32	ENSGT00390000006762 #33	ENSGT00940000155932 #34	ENSGT00940000155585 #35	ENSGT00390000000378.d.a #36	ENSGT00940000154503.b #37	ENSGT00940000154503.a ##37
Guinea pig	MODERN SPECIES	53	NME1 (ENSCPOG00000033542) #7	NME2 (ENSCPOG00000008413) #8	MBTD1 (ENSCPOG00000002995) #9	UTP18 (ENSCPOG00000001477) #10	CA10 (ENSCPOG00000015491) #11	KIF2B (ENSCPOG00000026487) #12	TOM1L1 (ENSCPOG00000023145) #13	COX11 (ENSCPOG00000008482) #14	STXBP4 (ENSCPOG00000011602) #15	HLF (ENSCPOG00000032087) #16	MMD (ENSCPOG00000039747) #17	SMIM36 (ENSCPOG00000032031) #18	TMEM100 (ENSCPOG00000040096) #19	PCTP (ENSCPOG00000013507) #20	ANKFN1 (ENSCPOG00000004925) #21	NOG (ENSCPOG00000004932) #22	C17orf67 (ENSCPOG00000022723) #23	DGKE (ENSCPOG00000011459) #24	ENSCPOG00000009078 #25	TRIM25 (ENSCPOG00000013452) #26	COIL (ENSCPOG00000001284) #27	SCPEP1 (ENSCPOG00000002870) #28	AKAP1 (ENSCPOG00000013327) #29	MSI2 (ENSCPOG00000034042) #30	CCDC182 (ENSCPOG00000008757) #31	MRPS23 (ENSCPOG00000008761) #32	CUEDC1 (ENSCPOG00000022982) #33	VEZF1 (ENSCPOG00000002637) #34	SRSF1 (ENSCPOG00000032681) #35	DYNLL2 (ENSCPOG00000039544) #36	OR4D1 (ENSCPOG00000030997) #37
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000162213 #7	ENSGT00940000161569 #8	ENSGT00940000153840.a.a #9	ENSGT00440000033919 #10	ENSGT00940000155223.b #11	ENSGT00940000160240 #13	ENSGT00390000007512 #14	ENSGT00390000002226 #15	ENSGT00940000156555 #16	ENSGT00940000157428 #17	ENSGT00980000198588 #18	ENSGT00940000154322.A #19	ENSGT00940000156843 #20	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #26	ENSGT00390000004832 #27	ENSGT00940000156193 #28	ENSGT00390000001360 #29	ENSGT00940000155420.b #30	ENSGT00390000009030 #32	ENSGT00390000006762 #33	ENSGT00940000155932 #34	ENSGT00940000155585 #35	ENSGT00390000000378.d.a #36	ENSGT00940000154503.b #37	ENSGT00940000154503.a ##37	ENSGT00940000156009.A
Long-tailed chinchilla	MODERN SPECIES	158	SPAG9 (ENSCLAG00000015982)	NME2 (ENSCLAG00000013895) #8	MBTD1 (ENSCLAG00000011590) #9	UTP18 (ENSCLAG00000012603) #10	CA10 (ENSCLAG00000014796) #11	TOM1L1 (ENSCLAG00000012206) #13	COX11 (ENSCLAG00000013909) #14	STXBP4 (ENSCLAG00000011711) #15	HLF (ENSCLAG00000013244) #16	MMD (ENSCLAG00000016458) #17	SMIM36 (ENSCLAG00000018044) #18	TMEM100 (ENSCLAG00000014942) #19	PCTP (ENSCLAG00000012326) #20	ANKFN1 (ENSCLAG00000015690) #21	ENSCLAG00000013710	NOG (ENSCLAG00000017798) #22	C17orf67 (ENSCLAG00000015852) #23	DGKE (ENSCLAG00000012917) #24	TRIM25 (ENSCLAG00000017035) #26	ENSCLAG00000014496 #27	SCPEP1 (ENSCLAG00000015159) #28	AKAP1 (ENSCLAG00000015261) #29	MSI2 (ENSCLAG00000014325) #30	MRPS23 (ENSCLAG00000013109) #32	CUEDC1 (ENSCLAG00000012560) #33	VEZF1 (ENSCLAG00000011306) #34	SRSF1 (ENSCLAG00000014707) #35	DYNLL2 (ENSCLAG00000014096) #36	ENSCLAG00000017831 #37	ENSCLAG00000015179 #37	OR4D2 (ENSCLAG00000017866) ##37
Degu	MODERN SPECIES	263								ENSODEG00000011833 #14	STXBP4 (ENSODEG00000011379) #15	HLF (ENSODEG00000011608) #16	MMD (ENSODEG00000013055) #17	TMEM100 (ENSODEG00000019916) #19	PCTP (ENSODEG00000014619) #20	ANKFN1 (ENSODEG00000012115) #21	ENSODEG00000012707	NOG (ENSODEG00000020232) #22	C17orf67 (ENSODEG00000013079) #23	DGKE (ENSODEG00000012600) #24	TRIM25 (ENSODEG00000011829) #26	ENSODEG00000012139	COIL (ENSODEG00000012389) #27	SCPEP1 (ENSODEG00000010769) #28	ENSODEG00000011240 #29	TMEM238 (ENSODEG00000011450)	MSI2 (ENSODEG00000011974) #30	ENSODEG00000011449	MRPS23 (ENSODEG00000011027) #32	CUEDC1 (ENSODEG00000011861) #33	VEZF1 (ENSODEG00000011127) #34	SRSF1 (ENSODEG00000011481) #35	DYNLL2 (ENSODEG00000013208) #36
Naked mole-rat female	MODERN SPECIES	12	CA10 (ENSHGLG00000012469) #11	ENSHGLG00000020500	ENSHGLG00000020791 #12	ENSHGLG00000039703	TOM1L1 (ENSHGLG00000016187) #13	COX11 (ENSHGLG00000012128) #14	STXBP4 (ENSHGLG00000012455) #15	ENSHGLG00000039115	HLF (ENSHGLG00000031895) #16	MMD (ENSHGLG00000011695) #17	SMIM36 (ENSHGLG00000047421) #18	TMEM100 (ENSHGLG00000049459) #19	PCTP (ENSHGLG00000013528) #20	ENSHGLG00000001904	ANKFN1 (ENSHGLG00000016659) #21	NOG (ENSHGLG00000048920) #22	C17orf67 (ENSHGLG00000050116) #23	DGKE (ENSHGLG00000014836) #24	ENSHGLG00000033692	ENSHGLG00000036551	TRIM25 (ENSHGLG00000011477) #26	ENSHGLG00000012113 #27	ENSHGLG00000012440 #28	AKAP1 (ENSHGLG00000014384) #29	MSI2 (ENSHGLG00000012444) #30	CCDC182 (ENSHGLG00000037062) #31	ENSHGLG00000041008	MRPS23 (ENSHGLG00000012208) #32	ENSHGLG00000044611 #33	ENSHGLG00000042495	ENSHGLG00000039867