Sarcopterygii	ANCESTRAL SPECIES	231						ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00440000033742.a.b
Tetrapoda	ANCESTRAL SPECIES	30		ENSGT00940000162213	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00440000033742.a.b	ENSGT00390000016493	ENSGT00390000012364	ENSGT00940000153469.a.b	ENSGT00940000153469.a.a	ENSGT00390000010581	ENSGT00940000156498	ENSGT00940000164538	ENSGT00940000155641	ENSGT00940000158838
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000161569	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000165325	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00440000033742.a.b	ENSGT00390000016493	ENSGT00390000012364	ENSGT00940000153469.a.b	ENSGT00940000153469.a.a	ENSGT00390000010581	ENSGT00940000156498	ENSGT00940000164538	ENSGT00940000155641	ENSGT00940000158838
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000161569	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000165325	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00440000033742.a.b	ENSGT00390000007384	ENSGT00390000016493	ENSGT00390000012364	ENSGT00940000153469.a.b	ENSGT00940000153469.a.a	ENSGT00390000010581	ENSGT00940000156498	ENSGT00940000164538	ENSGT00940000155641
Theria	ANCESTRAL SPECIES	25	ENSGT00940000161569	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00960000188608	ENSGT00390000000378.d.a #35	ENSGT00940000154503 #36
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000161569	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00960000188608	ENSGT00390000000378.d.a #35	ENSGT00940000154503.b #36
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00910000148790	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00940000155420.a.b ##29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00960000188608	ENSGT00390000000378.d.a #35
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00910000148790	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00940000155420.a.b ##29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00390000000378.d.a #35	ENSGT00940000154503.b #36
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00390000000378.d.a #35	ENSGT00940000154503.b #36	ENSGT00940000154503.a #37
Glires	ANCESTRAL SPECIES	3	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT01090000261778	ENSGT00910000148790	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00940000163071	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00390000000378.d.a #35	ENSGT00940000154503.b #36	ENSGT00940000154503.a #37
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000162213	ENSGT00940000161569	ENSGT00940000153840.a.a	ENSGT00440000033919 #7	ENSGT00940000155223.b #9	ENSGT00940000163180 #10	ENSGT00940000160240 #12	ENSGT00390000007512 #13	ENSGT00390000002226 #14	ENSGT00940000156555 #15	ENSGT00940000157428 #16	ENSGT00980000198588 #17	ENSGT00940000154322.A #18	ENSGT00940000156843 #19	ENSGT00940000159856 #21	ENSGT00390000006009.a.a.a #22	ENSGT00390000006555 #23	ENSGT00940000158604 #24	ENSGT00940000160741 #25	ENSGT00390000004832 #26	ENSGT00940000156193 #27	ENSGT00390000001360 #28	ENSGT00940000155420.b #29	ENSGT00390000014787 #30	ENSGT00390000009030 #31	ENSGT00390000006762 #32	ENSGT00940000155932 #33	ENSGT00940000155585 #34	ENSGT00390000000378.d.a #35	ENSGT00940000154503.b #36	ENSGT00940000154503.a #37
Rabbit	MODERN SPECIES	10	UTP18 (ENSOCUG00000001636) #7	ENSOCUG00000003298 #8	CA10 (ENSOCUG00000002345) #9	KIF2B (ENSOCUG00000010703) #10	ENSOCUG00000033244 #11	ENSOCUG00000008462 #12	COX11 (ENSOCUG00000008473) #13	STXBP4 (ENSOCUG00000008478) #14	HLF (ENSOCUG00000010547) #15	MMD (ENSOCUG00000010549) #16	SMIM36 (ENSOCUG00000032098) #17	TMEM100 (ENSOCUG00000026610) #18	PCTP (ENSOCUG00000008956) #19	ENSOCUG00000030404 #20	ANKFN1 (ENSOCUG00000001342) #21	NOG (ENSOCUG00000010678) #22	C17orf67 (ENSOCUG00000026474) #23	DGKE (ENSOCUG00000012800) #24	ENSOCUG00000011338 #25	COIL (ENSOCUG00000011345) #26	SCPEP1 (ENSOCUG00000011355) #27	AKAP1 (ENSOCUG00000017563) #28	MSI2 (ENSOCUG00000010440) #29	CCDC182 (ENSOCUG00000003346) #30	MRPS23 (ENSOCUG00000003350) #31	CUEDC1 (ENSOCUG00000003354) #32	VEZF1 (ENSOCUG00000017673) #33	ENSOCUG00000017678 #34	DYNLL2 (ENSOCUG00000016563) #35	OR4D1 (ENSOCUG00000011022) #36	OR4D2 (ENSOCUG00000010006) #37