Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000159720 #7	ENSGT00950000183025.a #8	ENSGT00940000161434 #9	ENSGT00940000159029 #10	ENSGT00940000161386 #11	ENSGT00940000161529 #12	ENSGT00940000161230 #13	ENSGT00940000161108 #14	ENSGT00940000158354 #15	ENSGT00940000162072 #16	ENSGT00940000159774 #17	ENSGT00940000155029.c.b #18	ENSGT00940000159503 #19	ENSGT00390000017856.b #20	ENSGT00940000160113 #21	ENSGT00940000154152.d.b.dc.b #22	ENSGT00940000153593.c.b.k #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00390000004405.b #25	ENSGT00390000000713 #26	ENSGT00940000154534.a #27	ENSGT00390000011219 #28	ENSGT00940000159590 #29	ENSGT00940000161498 #30	ENSGT00390000013474.b.a #31	ENSGT00940000161315 #32	ENSGT00390000000603 #33	ENSGT00940000157439 #34	ENSGT00940000160397 #35	ENSGT00940000153704.B #36	ENSGT00550000074898 #37
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0017020 #7	MGP_CAROLIEiJ_G0017021 #8	Ttll6 (MGP_CAROLIEiJ_G0017022) #9	Hoxb13 (MGP_CAROLIEiJ_G0017023) #10	Hoxb9 (MGP_CAROLIEiJ_G0017024) #11	Hoxb8 (MGP_CAROLIEiJ_G0017025) #12	Hoxb7 (MGP_CAROLIEiJ_G0017026) #13	Hoxb6 (MGP_CAROLIEiJ_G0017027) #14	Hoxb5 (MGP_CAROLIEiJ_G0017028) #15	Hoxb4 (MGP_CAROLIEiJ_G0017029) #16	Hoxb3 (MGP_CAROLIEiJ_G0017030) #17	Hoxb2 (MGP_CAROLIEiJ_G0017031) #18	Hoxb1 (MGP_CAROLIEiJ_G0017032) #19	Skap1 (MGP_CAROLIEiJ_G0017033) #20	Snx11 (MGP_CAROLIEiJ_G0017034) #21	Cbx1 (MGP_CAROLIEiJ_G0017035) #22	MGP_CAROLIEiJ_G0017036 #23	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #24	Copz2 (MGP_CAROLIEiJ_G0017038) #25	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #26	Prr15l (MGP_CAROLIEiJ_G0017040) #27	Pnpo (MGP_CAROLIEiJ_G0017041) #28	Sp2 (MGP_CAROLIEiJ_G0017042) #29	Sp6 (MGP_CAROLIEiJ_G0017043) #30	MGP_CAROLIEiJ_G0017044 #31	Lrrc46 (MGP_CAROLIEiJ_G0017045) #32	Mrpl10 (MGP_CAROLIEiJ_G0017046) #33	Osbpl7 (MGP_CAROLIEiJ_G0017047) #34	Tbx21 (MGP_CAROLIEiJ_G0017048) #35	Tbkbp1 (MGP_CAROLIEiJ_G0017049) #36	Kpnb1 (MGP_CAROLIEiJ_G0017050) #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000159720 #7	ENSGT00950000183025.a #8	ENSGT00940000161434 #9	ENSGT00940000159029 #10	ENSGT00940000161386 #11	ENSGT00940000161529 #12	ENSGT00940000161230 #13	ENSGT00940000161108 #14	ENSGT00940000158354 #15	ENSGT00940000162072 #16	ENSGT00940000159774 #17	ENSGT00940000155029.c.b #18	ENSGT00940000159503 #19	ENSGT00390000017856.b #20	ENSGT00940000160113 #21	ENSGT00940000154152.d.b.dc.b #22	ENSGT00940000153593.c.b.k #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00390000004405.b #25	ENSGT00390000000713 #26	ENSGT00940000154534.a #27	ENSGT00390000011219 #28	ENSGT00940000159590 #29	ENSGT00940000161498 #30	ENSGT00390000013474.b.a #31	ENSGT00940000161315 #32	ENSGT00390000000603 #33	ENSGT00940000157439 #34	ENSGT00940000160397 #35	ENSGT00940000153704.B #36	ENSGT00550000074898 #37
Mouse	MODERN SPECIES	2	Atp5g1 (ENSMUSG00000006057) #7	Calcoco2 (ENSMUSG00000006056) #8	Ttll6 (ENSMUSG00000038756) #9	Hoxb13 (ENSMUSG00000049604) #10	Hoxb9 (ENSMUSG00000020875) #11	Hoxb8 (ENSMUSG00000056648) #12	Hoxb7 (ENSMUSG00000038721) #13	Hoxb6 (ENSMUSG00000000690) #14	Hoxb5 (ENSMUSG00000038700) #15	Hoxb4 (ENSMUSG00000038692) #16	Hoxb3 (ENSMUSG00000048763) #17	Hoxb2 (ENSMUSG00000075588) #18	Hoxb1 (ENSMUSG00000018973) #19	Skap1 (ENSMUSG00000057058) #20	Snx11 (ENSMUSG00000020876) #21	Cbx1 (ENSMUSG00000018666) #22	Nfe2l1 (ENSMUSG00000038615) #24	Copz2 (ENSMUSG00000018672) #25	Cdk5rap3 (ENSMUSG00000018669) #26	Prr15l (ENSMUSG00000047040) #27	Pnpo (ENSMUSG00000018659) #28	Sp2 (ENSMUSG00000018678) #29	Sp6 (ENSMUSG00000038560) #30	Scrn2 (ENSMUSG00000020877) #31	Lrrc46 (ENSMUSG00000020878) #32	Mrpl10 (ENSMUSG00000001445) #33	Osbpl7 (ENSMUSG00000038534) #34	Tbx21 (ENSMUSG00000001444) #35	Tbkbp1 (ENSMUSG00000038517) #36	Kpnb1 (ENSMUSG00000001440) #37	Npepps (ENSMUSG00000001441)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000159720 #7	ENSGT00950000183025.a #8	ENSGT00940000161434 #9	ENSGT00940000159029 #10	ENSGT00940000161386 #11	ENSGT00940000161529 #12	ENSGT00940000161230 #13	ENSGT00940000161108 #14	ENSGT00940000158354 #15	ENSGT00940000162072 #16	ENSGT00940000159774 #17	ENSGT00940000155029.c.b #18	ENSGT00940000159503 #19	ENSGT00390000017856.b #20	ENSGT00940000160113 #21	ENSGT00940000154152.d.b.dc.b #22	ENSGT00940000153593.c.b.k #23	ENSGT00950000182892.a.b.a.a #24	ENSGT00390000004405.b #25	ENSGT00390000000713 #26	ENSGT00940000154534.a #27	ENSGT00390000011219 #28	ENSGT00940000159590 #29	ENSGT00940000161498 #30	ENSGT00390000013474.b.a #31	ENSGT00940000161315 #32	ENSGT00390000000603 #33	ENSGT00940000157439 #34	ENSGT00940000160397 #35	ENSGT00940000153704.B #36	ENSGT00550000074898 #37
spretus	MODERN SPECIES	2	Atp5g1 (MGP_SPRETEiJ_G0017866) #7	MGP_SPRETEiJ_G0017867 #8	Ttll6 (MGP_SPRETEiJ_G0017868) #9	Hoxb13 (MGP_SPRETEiJ_G0017869) #10	Hoxb9 (MGP_SPRETEiJ_G0017870) #11	Hoxb8 (MGP_SPRETEiJ_G0017871) #12	Hoxb7 (MGP_SPRETEiJ_G0017872) #13	Hoxb6 (MGP_SPRETEiJ_G0017873) #14	Hoxb5 (MGP_SPRETEiJ_G0017874) #15	Hoxb4 (MGP_SPRETEiJ_G0017875) #16	Hoxb3 (MGP_SPRETEiJ_G0017876) #17	Hoxb2 (MGP_SPRETEiJ_G0017877) #18	Hoxb1 (MGP_SPRETEiJ_G0017878) #19	MGP_SPRETEiJ_G0017879 #20	Snx11 (MGP_SPRETEiJ_G0017880) #21	Cbx1 (MGP_SPRETEiJ_G0017881) #22	MGP_SPRETEiJ_G0017882 #23	Nfe2l1 (MGP_SPRETEiJ_G0017883) #24	Copz2 (MGP_SPRETEiJ_G0017884) #25	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #26	Prr15l (MGP_SPRETEiJ_G0017886) #27	Pnpo (MGP_SPRETEiJ_G0017887) #28	Sp2 (MGP_SPRETEiJ_G0017888) #29	Sp6 (MGP_SPRETEiJ_G0017889) #30	Scrn2 (MGP_SPRETEiJ_G0017890) #31	Lrrc46 (MGP_SPRETEiJ_G0017891) #32	Mrpl10 (MGP_SPRETEiJ_G0017892) #33	Osbpl7 (MGP_SPRETEiJ_G0017893) #34	Tbx21 (MGP_SPRETEiJ_G0017894) #35	Tbkbp1 (MGP_SPRETEiJ_G0017895) #36	Kpnb1 (MGP_SPRETEiJ_G0017896) #37
Steppe mouse	MODERN SPECIES	3291	Ttll6 (ENSMSIG00000018881) #9	Hoxb13 (ENSMSIG00000018865) #10	Hoxb9 (ENSMSIG00000018823) #11	Hoxb8 (ENSMSIG00000018807) #12	Hoxb7 (ENSMSIG00000018805) #13	Hoxb6 (ENSMSIG00000018795) #14	Hoxb5 (ENSMSIG00000018787) #15	Hoxb4 (ENSMSIG00000018777) #16	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #17	Hoxb2 (ENSMSIG00000018769) #18	Hoxb1 (ENSMSIG00000018752) #19	Skap1 (ENSMSIG00000018601) #20	Snx11 (ENSMSIG00000018546) #21	ENSMSIG00000018520 #23	Cbx1 (ENSMSIG00000018447) #22	Nfe2l1 (ENSMSIG00000018374) #24	Copz2 (ENSMSIG00000018337) #25	Cdk5rap3 (ENSMSIG00000018309) #26	ENSMSIG00000018270 #27	ENSMSIG00000018267 #28	Sp2 (ENSMSIG00000018237) #29	Sp6 (ENSMSIG00000018223) #30	Scrn2 (ENSMSIG00000018202) #31	Lrrc46 (ENSMSIG00000018171) #32	Mrpl10 (ENSMSIG00000018160) #33	Osbpl7 (ENSMSIG00000018093) #34	Tbx21 (ENSMSIG00000018069) #35	Tbkbp1 (ENSMSIG00000018040) #36	Kpnb1 (ENSMSIG00000017971) #37	Npepps (ENSMSIG00000017886)