Euarchontoglires ANCESTRAL SPECIES 4 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00980000199681 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00950000185410 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Euarchontoglires_A ANCESTRAL SPECIES 4 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Glires DUPLICATION Glires ANCESTRAL SPECIES 3 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES 4 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Rodentia_B ANCESTRAL SPECIES 1 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Myomorpha ANCESTRAL SPECIES ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Muroidea ANCESTRAL SPECIES ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Upper Galilee mountains blind mole rat MODERN SPECIES 1028 ENSNGAG00000024212 #7 ENSNGAG00000023585 #8 Ttll6 (ENSNGAG00000011763) #9 Hoxb13 (ENSNGAG00000011053) #10 Hoxb9 (ENSNGAG00000010851) #11 Hoxb8 (ENSNGAG00000010647) #12 Hoxb7 (ENSNGAG00000010205) #13 Hoxb6 (ENSNGAG00000000973) #14 Hoxb5 (ENSNGAG00000023238) #15 Hoxb4 (ENSNGAG00000021768) #16 Hoxb3 (ENSNGAG00000020227) #17 Hoxb2 (ENSNGAG00000019089) #18 Hoxb1 (ENSNGAG00000018593) #19 Skap1 (ENSNGAG00000012571) #20 Snx11 (ENSNGAG00000010446) #21 Cbx1 (ENSNGAG00000006760) #22 Nfe2l1 (ENSNGAG00000000736) #23 Copz2 (ENSNGAG00000023713) #24 ENSNGAG00000000747 #25 ENSNGAG00000022529 #26 Prr15l (ENSNGAG00000021432) #27 Pnpo (ENSNGAG00000020016) #28 Sp2 (ENSNGAG00000017612) #29 Sp6 (ENSNGAG00000015868) #30 Scrn2 (ENSNGAG00000023806) #31 Lrrc46 (ENSNGAG00000022557) #32 Mrpl10 (ENSNGAG00000022195) #33 Osbpl7 (ENSNGAG00000019382) #34 Tbx21 (ENSNGAG00000002476) #35 Tbkbp1 (ENSNGAG00000021163) #36 Kpnb1 (ENSNGAG00000017610) #37 Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Cricetidae ANCESTRAL SPECIES ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.a.a ##22 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Cricetidae_B ANCESTRAL SPECIES ENSGT00940000159720.ab #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Prairie vole MODERN SPECIES 114 Ube2z (ENSMOCG00000018241) ENSMOCG00000013163 #7 Ttll6 (ENSMOCG00000021089) #9 Hoxb13 (ENSMOCG00000021389) #10 Hoxb9 (ENSMOCG00000020312) #11 Hoxb8 (ENSMOCG00000018435) #12 Hoxb7 (ENSMOCG00000020820) #13 Hoxb6 (ENSMOCG00000020355) #14 Hoxb5 (ENSMOCG00000014523) #15 Hoxb4 (ENSMOCG00000022964) #16 Hoxb3 (ENSMOCG00000020739) #17 Hoxb2 (ENSMOCG00000014846) #18 Hoxb1 (ENSMOCG00000002452) #19 Skap1 (ENSMOCG00000018431) #20 Snx11 (ENSMOCG00000019303) #21 Cbx1 (ENSMOCG00000001520) #22 Nfe2l1 (ENSMOCG00000016002) #23 Copz2 (ENSMOCG00000022427) #24 Cdk5rap3 (ENSMOCG00000019534) #25 Prr15l (ENSMOCG00000006695) #27 Pnpo (ENSMOCG00000011655) #28 Sp2 (ENSMOCG00000020935) #29 Sp6 (ENSMOCG00000007065) #30 Scrn2 (ENSMOCG00000019511) #31 Lrrc46 (ENSMOCG00000016707) #32 Mrpl10 (ENSMOCG00000019451) #33 Osbpl7 (ENSMOCG00000021054) #34 Tbx21 (ENSMOCG00000004097) #35 Tbkbp1 (ENSMOCG00000017020) #36 Kpnb1 (ENSMOCG00000003683) #37 Npepps (ENSMOCG00000011600) Murinae ANCESTRAL SPECIES 6 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Rat MODERN SPECIES 1 Ube2z (ENSRNOG00000006868) ENSRNOG00000066153 #8 Ttll6 (ENSRNOG00000004939) #9 Hoxb13 (ENSRNOG00000007491) #10 Hoxb9 (ENSRNOG00000007573) #11 Hoxb8 (ENSRNOG00000007585) #12 Hoxb7 (ENSRNOG00000007611) #13 Hoxb6 (ENSRNOG00000007823) #14 Hoxb5 (ENSRNOG00000008010) #15 Hoxb4 (ENSRNOG00000008191) #16 Hoxb3 (ENSRNOG00000008313) #17 Hoxb2 (ENSRNOG00000008365) #18 Hoxb1 (ENSRNOG00000008506) #19 Skap1 (ENSRNOG00000023881) #20 Snx11 (ENSRNOG00000008642) #21 Cbx1 (ENSRNOG00000008689) #22 Nfe2l1 (ENSRNOG00000008830) #23 Copz2 (ENSRNOG00000009225) #24 Cdk5rap3 (ENSRNOG00000048747) #25 Prr15l (ENSRNOG00000049162) #27 Pnpo (ENSRNOG00000046493) #28 Sp2 (ENSRNOG00000010492) #29 Sp6 (ENSRNOG00000023551) #30 Scrn2 (ENSRNOG00000010214) #31 Lrrc46 (ENSRNOG00000009902) #32 Mrpl10 (ENSRNOG00000009567) #33 Osbpl7 (ENSRNOG00000009473) #34 Tbx21 (ENSRNOG00000009427) #35 Tbkbp1 (ENSRNOG00000009370) #36 Kpnb1 (ENSRNOG00000009275) #37 AABR07030425.1 (ENSRNOG00000056057) Mus ANCESTRAL SPECIES 2 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00940000153593.c.b.k ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Shrew mouse MODERN SPECIES 5 Atp5g1 (MGP_PahariEiJ_G0018150) #7 MGP_PahariEiJ_G0018151 #8 Ttll6 (MGP_PahariEiJ_G0018152) #9 Hoxb13 (MGP_PahariEiJ_G0018153) #10 Hoxb9 (MGP_PahariEiJ_G0018154) #11 Hoxb8 (MGP_PahariEiJ_G0018155) #12 Hoxb7 (MGP_PahariEiJ_G0018156) #13 Hoxb6 (MGP_PahariEiJ_G0018157) #14 Hoxb5 (MGP_PahariEiJ_G0018158) #15 Hoxb4 (MGP_PahariEiJ_G0018159) #16 Hoxb3 (MGP_PahariEiJ_G0018160) #17 Hoxb2 (MGP_PahariEiJ_G0018161) #18 Hoxb1 (MGP_PahariEiJ_G0018162) #19 Skap1 (MGP_PahariEiJ_G0018163) #20 Snx11 (MGP_PahariEiJ_G0018164) #21 Cbx1 (MGP_PahariEiJ_G0018165) #22 MGP_PahariEiJ_G0018166 Nfe2l1 (MGP_PahariEiJ_G0018167) #23 Copz2 (MGP_PahariEiJ_G0018168) #24 Cdk5rap3 (MGP_PahariEiJ_G0018169) #25 Prr15l (MGP_PahariEiJ_G0018170) #27 Pnpo (MGP_PahariEiJ_G0018171) #28 Sp2 (MGP_PahariEiJ_G0018172) #29 Sp6 (MGP_PahariEiJ_G0018173) #30 Scrn2 (MGP_PahariEiJ_G0018174) #31 Lrrc46 (MGP_PahariEiJ_G0018175) #32 Mrpl10 (MGP_PahariEiJ_G0018176) #33 Osbpl7 (MGP_PahariEiJ_G0018177) #34 Tbx21 (MGP_PahariEiJ_G0018178) #35 Tbkbp1 (MGP_PahariEiJ_G0018179) #36 Npepps (MGP_PahariEiJ_G0018180) Mus_A ANCESTRAL SPECIES 2 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00940000153593.c.b.k ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Ryukyu mouse MODERN SPECIES 2 MGP_CAROLIEiJ_G0017020 #7 MGP_CAROLIEiJ_G0017021 #8 Ttll6 (MGP_CAROLIEiJ_G0017022) #9 Hoxb13 (MGP_CAROLIEiJ_G0017023) #10 Hoxb9 (MGP_CAROLIEiJ_G0017024) #11 Hoxb8 (MGP_CAROLIEiJ_G0017025) #12 Hoxb7 (MGP_CAROLIEiJ_G0017026) #13 Hoxb6 (MGP_CAROLIEiJ_G0017027) #14 Hoxb5 (MGP_CAROLIEiJ_G0017028) #15 Hoxb4 (MGP_CAROLIEiJ_G0017029) #16 Hoxb3 (MGP_CAROLIEiJ_G0017030) #17 Hoxb2 (MGP_CAROLIEiJ_G0017031) #18 Hoxb1 (MGP_CAROLIEiJ_G0017032) #19 Skap1 (MGP_CAROLIEiJ_G0017033) #20 Snx11 (MGP_CAROLIEiJ_G0017034) #21 Cbx1 (MGP_CAROLIEiJ_G0017035) #22 MGP_CAROLIEiJ_G0017036 Nfe2l1 (MGP_CAROLIEiJ_G0017037) #23 Copz2 (MGP_CAROLIEiJ_G0017038) #24 Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #25 Prr15l (MGP_CAROLIEiJ_G0017040) #27 Pnpo (MGP_CAROLIEiJ_G0017041) #28 Sp2 (MGP_CAROLIEiJ_G0017042) #29 Sp6 (MGP_CAROLIEiJ_G0017043) #30 MGP_CAROLIEiJ_G0017044 #31 Lrrc46 (MGP_CAROLIEiJ_G0017045) #32 Mrpl10 (MGP_CAROLIEiJ_G0017046) #33 Osbpl7 (MGP_CAROLIEiJ_G0017047) #34 Tbx21 (MGP_CAROLIEiJ_G0017048) #35 Tbkbp1 (MGP_CAROLIEiJ_G0017049) #36 Kpnb1 (MGP_CAROLIEiJ_G0017050) #37 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00940000153593.c.b.k ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Mouse MODERN SPECIES 2 Atp5g1 (ENSMUSG00000006057) #7 Calcoco2 (ENSMUSG00000006056) #8 Ttll6 (ENSMUSG00000038756) #9 Hoxb13 (ENSMUSG00000049604) #10 Hoxb9 (ENSMUSG00000020875) #11 Hoxb8 (ENSMUSG00000056648) #12 Hoxb7 (ENSMUSG00000038721) #13 Hoxb6 (ENSMUSG00000000690) #14 Hoxb5 (ENSMUSG00000038700) #15 Hoxb4 (ENSMUSG00000038692) #16 Hoxb3 (ENSMUSG00000048763) #17 Hoxb2 (ENSMUSG00000075588) #18 Hoxb1 (ENSMUSG00000018973) #19 Skap1 (ENSMUSG00000057058) #20 Snx11 (ENSMUSG00000020876) #21 Cbx1 (ENSMUSG00000018666) #22 Nfe2l1 (ENSMUSG00000038615) #23 Copz2 (ENSMUSG00000018672) #24 Cdk5rap3 (ENSMUSG00000018669) #25 Prr15l (ENSMUSG00000047040) #27 Pnpo (ENSMUSG00000018659) #28 Sp2 (ENSMUSG00000018678) #29 Sp6 (ENSMUSG00000038560) #30 Scrn2 (ENSMUSG00000020877) #31 Lrrc46 (ENSMUSG00000020878) #32 Mrpl10 (ENSMUSG00000001445) #33 Osbpl7 (ENSMUSG00000038534) #34 Tbx21 (ENSMUSG00000001444) #35 Tbkbp1 (ENSMUSG00000038517) #36 Kpnb1 (ENSMUSG00000001440) #37 Npepps (ENSMUSG00000001441) Mus_C ANCESTRAL SPECIES 3 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00940000153593.c.b.k ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 spretus MODERN SPECIES 2 Atp5g1 (MGP_SPRETEiJ_G0017866) #7 MGP_SPRETEiJ_G0017867 #8 Ttll6 (MGP_SPRETEiJ_G0017868) #9 Hoxb13 (MGP_SPRETEiJ_G0017869) #10 Hoxb9 (MGP_SPRETEiJ_G0017870) #11 Hoxb8 (MGP_SPRETEiJ_G0017871) #12 Hoxb7 (MGP_SPRETEiJ_G0017872) #13 Hoxb6 (MGP_SPRETEiJ_G0017873) #14 Hoxb5 (MGP_SPRETEiJ_G0017874) #15 Hoxb4 (MGP_SPRETEiJ_G0017875) #16 Hoxb3 (MGP_SPRETEiJ_G0017876) #17 Hoxb2 (MGP_SPRETEiJ_G0017877) #18 Hoxb1 (MGP_SPRETEiJ_G0017878) #19 MGP_SPRETEiJ_G0017879 #20 Snx11 (MGP_SPRETEiJ_G0017880) #21 Cbx1 (MGP_SPRETEiJ_G0017881) #22 MGP_SPRETEiJ_G0017882 Nfe2l1 (MGP_SPRETEiJ_G0017883) #23 Copz2 (MGP_SPRETEiJ_G0017884) #24 Cdk5rap3 (MGP_SPRETEiJ_G0017885) #25 Prr15l (MGP_SPRETEiJ_G0017886) #27 Pnpo (MGP_SPRETEiJ_G0017887) #28 Sp2 (MGP_SPRETEiJ_G0017888) #29 Sp6 (MGP_SPRETEiJ_G0017889) #30 Scrn2 (MGP_SPRETEiJ_G0017890) #31 Lrrc46 (MGP_SPRETEiJ_G0017891) #32 Mrpl10 (MGP_SPRETEiJ_G0017892) #33 Osbpl7 (MGP_SPRETEiJ_G0017893) #34 Tbx21 (MGP_SPRETEiJ_G0017894) #35 Tbkbp1 (MGP_SPRETEiJ_G0017895) #36 Kpnb1 (MGP_SPRETEiJ_G0017896) #37 Steppe mouse MODERN SPECIES 3291 Ttll6 (ENSMSIG00000018881) #9 Hoxb13 (ENSMSIG00000018865) #10 Hoxb9 (ENSMSIG00000018823) #11 Hoxb8 (ENSMSIG00000018807) #12 Hoxb7 (ENSMSIG00000018805) #13 Hoxb6 (ENSMSIG00000018795) #14 Hoxb5 (ENSMSIG00000018787) #15 Hoxb4 (ENSMSIG00000018777) #16 ENSMSIG00000018776 Hoxb3 (ENSMSIG00000018771) #17 Hoxb2 (ENSMSIG00000018769) #18 Hoxb1 (ENSMSIG00000018752) #19 Skap1 (ENSMSIG00000018601) #20 Snx11 (ENSMSIG00000018546) #21 ENSMSIG00000018520 Cbx1 (ENSMSIG00000018447) #22 Nfe2l1 (ENSMSIG00000018374) #23 Copz2 (ENSMSIG00000018337) #24 Cdk5rap3 (ENSMSIG00000018309) #25 ENSMSIG00000018270 #27 ENSMSIG00000018267 #28 Sp2 (ENSMSIG00000018237) #29 Sp6 (ENSMSIG00000018223) #30 Scrn2 (ENSMSIG00000018202) #31 Lrrc46 (ENSMSIG00000018171) #32 Mrpl10 (ENSMSIG00000018160) #33 Osbpl7 (ENSMSIG00000018093) #34 Tbx21 (ENSMSIG00000018069) #35 Tbkbp1 (ENSMSIG00000018040) #36 Kpnb1 (ENSMSIG00000017971) #37 Npepps (ENSMSIG00000017886) Lesser Egyptian jerboa MODERN SPECIES 44 Zbtb2 (ENSJJAG00000016308) Rmnd1 (ENSJJAG00000008798) ENSJJAG00000015720 ENSJJAG00000011473 Esr1 (ENSJJAG00000015406) ENSJJAG00000010411 Syne1 (ENSJJAG00000014032) Myct1 (ENSJJAG00000022731) Vip (ENSJJAG00000018682) ENSJJAG00000005271 Fbxo5 (ENSJJAG00000006490) Mtrf1l (ENSJJAG00000024141) Rgs17 (ENSJJAG00000009873) Ipcef1 (ENSJJAG00000001014) Oprm1 (ENSJJAG00000024159) ENSJJAG00000012246 #22 Cnksr3 (ENSJJAG00000023905) ENSJJAG00000012164 Scaf8 (ENSJJAG00000020480) Tiam2 (ENSJJAG00000022310) Tfb1m (ENSJJAG00000022171) Nox3 (ENSJJAG00000020165) Arid1b (ENSJJAG00000023167) Tmem242 (ENSJJAG00000010583) Zdhhc14 (ENSJJAG00000010246) Snx9 (ENSJJAG00000022587) Synj2 (ENSJJAG00000014436) Serac1 (ENSJJAG00000008471) Gtf2h5 (ENSJJAG00000014212) ENSJJAG00000018115 ENSJJAG00000007576 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 326 Ube2z (ENSDORG00000009258) ENSDORG00000008511 ENSDORG00000028385 ENSDORG00000024585 #8 Hoxb13 (ENSDORG00000008369) #10 Hoxb9 (ENSDORG00000027423) #11 Hoxb8 (ENSDORG00000007906) #12 Hoxb7 (ENSDORG00000007905) #13 Hoxb6 (ENSDORG00000023877) #14 Hoxb5 (ENSDORG00000007900) #15 Hoxb4 (ENSDORG00000007899) #16 Hoxb3 (ENSDORG00000007898) #17 Hoxb2 (ENSDORG00000007897) #18 Hoxb1 (ENSDORG00000007896) #19 Snx11 (ENSDORG00000029078) #21 Cbx1 (ENSDORG00000026399) #22 Nfe2l1 (ENSDORG00000000715) #23 Copz2 (ENSDORG00000013441) #24 Prr15l (ENSDORG00000027427) #27 Pnpo (ENSDORG00000014110) #28 Sp2 (ENSDORG00000014109) #29 Sp6 (ENSDORG00000026201) #30 Scrn2 (ENSDORG00000002361) #31 Osbpl7 (ENSDORG00000002354) #34 Tbx21 (ENSDORG00000013302) #35 Npepps (ENSDORG00000009627) Socs7 (ENSDORG00000028979) ENSDORG00000007713 Srcin1 (ENSDORG00000007714) Mllt6 (ENSDORG00000016578) Cisd3 (ENSDORG00000029439) Kangaroo rat MODERN SPECIES 518 ENSDORG00000030029 ENSDORG00000007256 ENSDORG00000000716 #22 Fbp2 (ENSDORG00000006615) Fbp1 (ENSDORG00000005283) Aopep (ENSDORG00000011343) Fancc (ENSDORG00000011345) Ptch1 (ENSDORG00000001320) ENSDORG00000010788 Hsd17b3 (ENSDORG00000015937) ENSDORG00000030053 Slc35d2 (ENSDORG00000010744) Zfp367 (ENSDORG00000027565) ENSDORG00000023928 Rodentia_A ANCESTRAL SPECIES 3 ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Sciuridae ANCESTRAL SPECIES 4 ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Eurasian red squirrel MODERN SPECIES 12 ATP5MC1 (ENSSVLG00005020344) CALCOCO2 (ENSSVLG00005020296) #8 TTLL6 (ENSSVLG00005020005) #9 HOXB13 (ENSSVLG00005019820) #10 HOXB9 (ENSSVLG00005019725) #11 HOXB8 (ENSSVLG00005019675) #12 HOXB7 (ENSSVLG00005019618) #13 HOXB6 (ENSSVLG00005019586) #14 HOXB5 (ENSSVLG00005019546) #15 HOXB4 (ENSSVLG00005019455) #16 HOXB3 (ENSSVLG00005019421) #17 HOXB2 (ENSSVLG00005019378) #18 HOXB1 (ENSSVLG00005019304) #19 SKAP1 (ENSSVLG00005019232) #20 SNX11 (ENSSVLG00005019122) #21 CBX1 (ENSSVLG00005019034) #22 NFE2L1 (ENSSVLG00005018798) #23 COPZ2 (ENSSVLG00005018641) #24 CDK5RAP3 (ENSSVLG00005018459) #25 PRR15L (ENSSVLG00005018399) #27 PNPO (ENSSVLG00005018295) #28 ENSSVLG00005018218 #29 SP6 (ENSSVLG00005018194) #30 SCRN2 (ENSSVLG00005018077) #31 LRRC46 (ENSSVLG00005018036) #32 MRPL10 (ENSSVLG00005017985) #33 OSBPL7 (ENSSVLG00005017757) #34 TBX21 (ENSSVLG00005017653) #35 TBKBP1 (ENSSVLG00005017602) #36 KPNB1 (ENSSVLG00005017557) #37 NPEPPS (ENSSVLG00005017198) Marmotini ANCESTRAL SPECIES 8 ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Alpin marmot MODERN SPECIES 42 GIP (ENSMMMG00000000652) SNF8 (ENSMMMG00000000680) UBE2Z (ENSMMMG00000000717) ATP5MC1 (ENSMMMG00000000731) ENSMMMG00000000759 #8 TTLL6 (ENSMMMG00000001013) #9 HOXB13 (ENSMMMG00000001064) #10 HOXB7 (ENSMMMG00000001087) #13 HOXB6 (ENSMMMG00000001098) #14 HOXB5 (ENSMMMG00000001112) #15 HOXB4 (ENSMMMG00000001129) #16 HOXB3 (ENSMMMG00000001139) #17 HOXB1 (ENSMMMG00000001151) #19 SKAP1 (ENSMMMG00000001168) #20 SNX11 (ENSMMMG00000001243) #21 CBX1 (ENSMMMG00000001254) #22 NFE2L1 (ENSMMMG00000001284) #23 COPZ2 (ENSMMMG00000001352) #24 CDK5RAP3 (ENSMMMG00000001404) #25 GOSR2 (ENSMMMG00000001471) RPRML (ENSMMMG00000001486) LYZL6 (ENSMMMG00000001501) ENSMMMG00000001520 ENSMMMG00000001551 ENSMMMG00000001756 ENSMMMG00000001792 MAP3K14 (ENSMMMG00000002213) ENSMMMG00000002245 FMNL1 (ENSMMMG00000002279) HEXIM2 (ENSMMMG00000002534) HEXIM1 (ENSMMMG00000002544) Marmotini_b ANCESTRAL SPECIES 5 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Squirrel MODERN SPECIES 90 ENSSTOG00000013395 #8 TTLL6 (ENSSTOG00000006016) #9 ENSSTOG00000025444 HOXB13 (ENSSTOG00000014942) #10 HOXB9 (ENSSTOG00000009741) #11 HOXB8 (ENSSTOG00000028337) #12 HOXB7 (ENSSTOG00000025657) #13 HOXB6 (ENSSTOG00000020303) #14 HOXB5 (ENSSTOG00000009740) #15 HOXB4 (ENSSTOG00000009734) #16 HOXB3 (ENSSTOG00000025093) #17 HOXB2 (ENSSTOG00000023586) #18 HOXB1 (ENSSTOG00000028630) #19 SKAP1 (ENSSTOG00000013692) #20 SNX11 (ENSSTOG00000013684) #21 CBX1 (ENSSTOG00000023986) #22 NFE2L1 (ENSSTOG00000013664) #23 ENSSTOG00000027550 #24 CDK5RAP3 (ENSSTOG00000006244) #25 PRR15L (ENSSTOG00000006235) #27 PNPO (ENSSTOG00000006221) #28 SP2 (ENSSTOG00000015926) #29 SP6 (ENSSTOG00000001607) #30 SCRN2 (ENSSTOG00000027108) #31 LRRC46 (ENSSTOG00000002068) #32 MRPL10 (ENSSTOG00000024617) #33 OSBPL7 (ENSSTOG00000001636) #34 TBX21 (ENSSTOG00000001626) #35 TBKBP1 (ENSSTOG00000023713) #36 KPNB1 (ENSSTOG00000007896) #37 NPEPPS (ENSSTOG00000004901) Arctic ground squirrel MODERN SPECIES 46 ENSUPAG00010006195 #7 CALCOCO2 (ENSUPAG00010006243) #8 TTLL6 (ENSUPAG00010006267) #9 HOXB13 (ENSUPAG00010006301) #10 HOXB9 (ENSUPAG00010006305) #11 HOXB8 (ENSUPAG00010006310) #12 HOXB7 (ENSUPAG00010006312) #13 HOXB6 (ENSUPAG00010006317) #14 HOXB5 (ENSUPAG00010006320) #15 HOXB4 (ENSUPAG00010006325) #16 HOXB3 (ENSUPAG00010006328) #17 HOXB2 (ENSUPAG00010006336) #18 HOXB1 (ENSUPAG00010006340) #19 SKAP1 (ENSUPAG00010006345) #20 SNX11 (ENSUPAG00010006370) #21 CBX1 (ENSUPAG00010006381) #22 NFE2L1 (ENSUPAG00010006396) #23 COPZ2 (ENSUPAG00010006455) #24 CDK5RAP3 (ENSUPAG00010006466) #25 PRR15L (ENSUPAG00010006473) #27 PNPO (ENSUPAG00010006483) #28 SP2 (ENSUPAG00010006507) #29 SP6 (ENSUPAG00010006522) #30 SCRN2 (ENSUPAG00010006526) #31 LRRC46 (ENSUPAG00010006533) #32 MRPL10 (ENSUPAG00010006539) #33 OSBPL7 (ENSUPAG00010006545) #34 TBX21 (ENSUPAG00010006582) #35 TBKBP1 (ENSUPAG00010006591) #36 KPNB1 (ENSUPAG00010006624) #37 NPEPPS (ENSUPAG00010006649) Hystricomorpha ANCESTRAL SPECIES 3 ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Naked mole-rat female MODERN SPECIES 12 CALCOCO2 (ENSHGLG00000012114) #8 TTLL6 (ENSHGLG00000019187) #9 HOXB13 (ENSHGLG00000014634) #10 ENSHGLG00000048296 HOXB9 (ENSHGLG00000014731) #11 HOXB8 (ENSHGLG00000038380) #12 HOXB7 (ENSHGLG00000045318) #13 HOXB6 (ENSHGLG00000012400) #14 HOXB5 (ENSHGLG00000039265) #15 HOXB4 (ENSHGLG00000034075) #16 HOXB3 (ENSHGLG00000010686) #17 HOXB2 (ENSHGLG00000010090) #18 HOXB1 (ENSHGLG00000009781) #19 SKAP1 (ENSHGLG00000014563) #20 SNX11 (ENSHGLG00000016837) #21 CBX1 (ENSHGLG00000013574) #22 NFE2L1 (ENSHGLG00000012592) #23 COPZ2 (ENSHGLG00000018543) #24 CDK5RAP3 (ENSHGLG00000019464) #25 PRR15L (ENSHGLG00000014696) #27 PNPO (ENSHGLG00000013159) #28 SP2 (ENSHGLG00000009902) #29 SP6 (ENSHGLG00000021113) #30 SCRN2 (ENSHGLG00000041375) #31 LRRC46 (ENSHGLG00000035931) #32 MRPL10 (ENSHGLG00000048399) #33 OSBPL7 (ENSHGLG00000012525) #34 TBX21 (ENSHGLG00000012216) #35 TBKBP1 (ENSHGLG00000049817) #36 KPNB1 (ENSHGLG00000014138) #37 ENSHGLG00000012466 Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Guinea pig MODERN SPECIES 53 SNF8 (ENSCPOG00000020610) UBE2Z (ENSCPOG00000024416) ENSCPOG00000009017 CALCOCO2 (ENSCPOG00000021273) #8 TTLL6 (ENSCPOG00000012509) #9 HOXB13 (ENSCPOG00000013509) #10 HOXB9 (ENSCPOG00000037597) #11 HOXB6 (ENSCPOG00000040707) #14 HOXB5 (ENSCPOG00000030746) #15 ENSCPOG00000010105 ENSCPOG00000010107 #17 HOXB2 (ENSCPOG00000035468) #18 HOXB1 (ENSCPOG00000022183) #19 SKAP1 (ENSCPOG00000022118) #20 SNX11 (ENSCPOG00000020234) #21 CBX1 (ENSCPOG00000034435) #22 NFE2L1 (ENSCPOG00000030805) #23 COPZ2 (ENSCPOG00000019500) #24 CDK5RAP3 (ENSCPOG00000007275) #25 PRR15L (ENSCPOG00000035567) #27 PNPO (ENSCPOG00000003187) #28 SP2 (ENSCPOG00000014943) #29 SP6 (ENSCPOG00000007638) #30 SCRN2 (ENSCPOG00000006929) #31 LRRC46 (ENSCPOG00000006925) #32 MRPL10 (ENSCPOG00000037104) #33 OSBPL7 (ENSCPOG00000006914) #34 TBX21 (ENSCPOG00000026273) #35 TBKBP1 (ENSCPOG00000036345) #36 KPNB1 (ENSCPOG00000006566) #37 NPEPPS (ENSCPOG00000006559) Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Degu MODERN SPECIES 97 ENSODEG00000017032 UBE2Z (ENSODEG00000017306) ATP5MC1 (ENSODEG00000017366) TTLL6 (ENSODEG00000017145) #9 HOXB13 (ENSODEG00000017199) #10 HOXB9 (ENSODEG00000017293) #11 HOXB8 (ENSODEG00000017119) #12 HOXB6 (ENSODEG00000016988) #14 HOXB5 (ENSODEG00000017253) #15 HOXB4 (ENSODEG00000017038) #16 HOXB3 (ENSODEG00000017116) #17 HOXB2 (ENSODEG00000017153) #18 HOXB1 (ENSODEG00000017050) #19 SKAP1 (ENSODEG00000017533) #20 SNX11 (ENSODEG00000017458) #21 CBX1 (ENSODEG00000017272) #22 NFE2L1 (ENSODEG00000017348) #23 ENSODEG00000020421 COPZ2 (ENSODEG00000017565) #24 ENSODEG00000017229 #25 PNPO (ENSODEG00000017424) #28 SP2 (ENSODEG00000017126) #29 SP6 (ENSODEG00000017625) #30 SCRN2 (ENSODEG00000017395) #31 LRRC46 (ENSODEG00000017367) #32 MRPL10 (ENSODEG00000017536) #33 OSBPL7 (ENSODEG00000017364) #34 TBX21 (ENSODEG00000017610) #35 ENSODEG00000017455 #36 KPNB1 (ENSODEG00000017287) #37 NPEPPS (ENSODEG00000017337) Long-tailed chinchilla MODERN SPECIES 158 UBE2Z (ENSCLAG00000016068) ATP5MC1 (ENSCLAG00000015723) CALCOCO2 (ENSCLAG00000015881) #8 TTLL6 (ENSCLAG00000013529) #9 HOXB13 (ENSCLAG00000014855) #10 ENSCLAG00000015198 #11 HOXB7 (ENSCLAG00000014906) #13 HOXB6 (ENSCLAG00000015524) #14 HOXB5 (ENSCLAG00000014374) #15 HOXB4 (ENSCLAG00000014725) #16 HOXB3 (ENSCLAG00000015322) #17 HOXB2 (ENSCLAG00000015271) #18 HOXB1 (ENSCLAG00000013047) #19 SKAP1 (ENSCLAG00000015423) #20 SNX11 (ENSCLAG00000015837) #21 CBX1 (ENSCLAG00000013587) #22 NFE2L1 (ENSCLAG00000014836) #23 COPZ2 (ENSCLAG00000013544) #24 CDK5RAP3 (ENSCLAG00000012292) #25 PRR15L (ENSCLAG00000017903) #27 PNPO (ENSCLAG00000013871) #28 SP2 (ENSCLAG00000014115) #29 SP6 (ENSCLAG00000016276) #30 LRRC46 (ENSCLAG00000016713) #32 SCRN2 (ENSCLAG00000013965) #31 MRPL10 (ENSCLAG00000015400) #33 OSBPL7 (ENSCLAG00000014839) #34 TBX21 (ENSCLAG00000015235) #35 ENSCLAG00000015338 #36 KPNB1 (ENSCLAG00000017091) #37 NPEPPS (ENSCLAG00000016661) Rodentia DUPLICATION Rodentia ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.a ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.a ##22 Sciuridae ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.a ##22 Eurasian red squirrel MODERN SPECIES 6 INVS (ENSSVLG00005021701) TEX10 (ENSSVLG00005021757) TMEFF1 (ENSSVLG00005021870) CAVIN4 (ENSSVLG00005021929) ENSSVLG00005021949 PLPPR1 (ENSSVLG00005022005) ENSSVLG00005022075 BAAT (ENSSVLG00005022141) ENSSVLG00005022189 ZNF189 (ENSSVLG00005022220) ALDOB (ENSSVLG00005022272) ENSSVLG00005022415 PGAP4 (ENSSVLG00005022426) RNF20 (ENSSVLG00005022444) GRIN3A (ENSSVLG00005022487) ENSSVLG00005022639 ##22 ENSSVLG00005022668 SMC2 (ENSSVLG00005022706) ENSSVLG00005022873 OR13F1 (ENSSVLG00005022886) ENSSVLG00005022901 ENSSVLG00005022930 ENSSVLG00005022940 ENSSVLG00005022956 ENSSVLG00005022968 ENSSVLG00005022984 ENSSVLG00005022990 ENSSVLG00005023004 OR13D1 (ENSSVLG00005023029) NIPSNAP3A (ENSSVLG00005023053) ABCA1 (ENSSVLG00005023157) Rodentia_B ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.a ##22 Lesser Egyptian jerboa MODERN SPECIES 90 ENSJJAG00000009661 Gnat3 (ENSJJAG00000005233) Cd36 (ENSJJAG00000024337) Sema3c (ENSJJAG00000019104) ENSJJAG00000022022 Cdhr17 (ENSJJAG00000014903) ENSJJAG00000023349 Hgf (ENSJJAG00000003978) Cacna2d1 (ENSJJAG00000021230) Pclo (ENSJJAG00000007676) Sema3e (ENSJJAG00000015257) Sema3a (ENSJJAG00000021085) ENSJJAG00000012318 ENSJJAG00000000425 Sema3d (ENSJJAG00000020043) ENSJJAG00000021629 ##22 Grm3 (ENSJJAG00000019396) Elapor2 (ENSJJAG00000016327) ENSJJAG00000014144 Dmtf1 (ENSJJAG00000023859) Tmem243 (ENSJJAG00000021514) Crot (ENSJJAG00000010471) Abcb4 (ENSJJAG00000006218) ENSJJAG00000016731 ENSJJAG00000008148 ENSJJAG00000022644 Rundc3b (ENSJJAG00000011621) Slc25a40 (ENSJJAG00000018652) Dbf4 (ENSJJAG00000013663) Adam22 (ENSJJAG00000007141) Sri (ENSJJAG00000006383) Rodentia ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Muroidea ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Muroidea_A ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Cricetidae ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Cricetinae ANCESTRAL SPECIES ENSGT00940000159720.`b.b #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc.a.b ##22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Golden Hamster MODERN SPECIES 674 Ube2z (ENSMAUG00000007792) ENSMAUG00000021751 #7 Ttll6 (ENSMAUG00000020973) #9 Hoxb13 (ENSMAUG00000008407) #10 Hoxb9 (ENSMAUG00000017720) #11 Hoxb8 (ENSMAUG00000012636) #12 Hoxb7 (ENSMAUG00000021297) #13 Hoxb6 (ENSMAUG00000021423) #14 Hoxb5 (ENSMAUG00000021419) #15 Hoxb4 (ENSMAUG00000009367) #16 Hoxb3 (ENSMAUG00000011251) #17 Hoxb2 (ENSMAUG00000021979) #18 Hoxb1 (ENSMAUG00000013237) #19 Skap1 (ENSMAUG00000022191) #20 Snx11 (ENSMAUG00000021528) #21 ENSMAUG00000003463 ##22 Nfe2l1 (ENSMAUG00000020456) #23 Copz2 (ENSMAUG00000010560) #24 Cdk5rap3 (ENSMAUG00000007991) #25 Pnpo (ENSMAUG00000021706) #28 Sp2 (ENSMAUG00000019269) #29 Sp6 (ENSMAUG00000009667) #30 Scrn2 (ENSMAUG00000010014) #31 Lrrc46 (ENSMAUG00000019416) #32 Mrpl10 (ENSMAUG00000000820) #33 Osbpl7 (ENSMAUG00000013876) #34 Tbx21 (ENSMAUG00000017507) #35 Tbkbp1 (ENSMAUG00000018604) #36 Kpnb1 (ENSMAUG00000006211) #37 Npepps (ENSMAUG00000017383) Mrpl45 (ENSMAUG00000021636) Rodentia_A ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Sciuridae ANCESTRAL SPECIES ENSGT00940000154152.d.b.dc.a.b ##22 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 7 CCR1 (ENSSVLG00005023402) CCR3 (ENSSVLG00005023390) CCR2 (ENSSVLG00005023380) CCR5 (ENSSVLG00005023362) CCRL2 (ENSSVLG00005023356) LTF (ENSSVLG00005023125) ENSSVLG00005023076 ENSSVLG00005023044 LRRC2 (ENSSVLG00005022989) ENSSVLG00005022921 FAM240A (ENSSVLG00005022865) ALS2CL (ENSSVLG00005022812) TMIE (ENSSVLG00005022742) PRSS50 (ENSSVLG00005022696) ENSSVLG00005022652 ENSSVLG00005022619 ##22 ENSSVLG00005022586 ENSSVLG00005022474 ENSSVLG00005022421 ENSSVLG00005022314 ENSSVLG00005022233 MYL3 (ENSSVLG00005022172) PTH1R (ENSSVLG00005022129) CCDC12 (ENSSVLG00005022054) SETD2 (ENSSVLG00005020438) KIF9 (ENSSVLG00005020299) KLHL18 (ENSSVLG00005020218) ENSSVLG00005020103 ENSSVLG00005019989 SCAP (ENSSVLG00005019796) ELP6 (ENSSVLG00005019611) Eurasian red squirrel MODERN SPECIES 156 VAMP7 (ENSSVLG00005015109) SPRY3 (ENSSVLG00005015208) ENSSVLG00005015225 ##22 TMLHE (ENSSVLG00005015282) ENSSVLG00005015345 ENSSVLG00005015367 ENSSVLG00005015390 CLIC2 (ENSSVLG00005015403) RAB39B (ENSSVLG00005015437) ENSSVLG00005015476 ENSSVLG00005015678 MTCP1 (ENSSVLG00005016077) ENSSVLG00005016124 F8 (ENSSVLG00005016200) ENSSVLG00005016424 ENSSVLG00005016435 SMIM9 (ENSSVLG00005016452) MPP1 (ENSSVLG00005016498) Lagomorpha ANCESTRAL SPECIES ENSGT00390000007843 ENSGT00940000159091 ENSGT00940000154298.a.b ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b.dc #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Pika MODERN SPECIES 4733 ENSOPRG00000003732 #20 SNX11 (ENSOPRG00000003718) #21 CBX1 (ENSOPRG00000003699) #22 ENSOPRG00000003683 #23 Rabbit MODERN SPECIES 10 UBE2Z (ENSOCUG00000009159) ATP5MC1 (ENSOCUG00000016225) CALCOCO2 (ENSOCUG00000016209) #8 ENSOCUG00000038154 TTLL6 (ENSOCUG00000006289) #9 HOXB13 (ENSOCUG00000012816) #10 HOXB9 (ENSOCUG00000027316) #11 HOXB8 (ENSOCUG00000029186) #12 HOXB5 (ENSOCUG00000023093) #15 HOXB6 (ENSOCUG00000011560) #14 HOXB3 (ENSOCUG00000023337) #17 HOXB2 (ENSOCUG00000024951) #18 HOXB1 (ENSOCUG00000001720) #19 SKAP1 (ENSOCUG00000001717) #20 SNX11 (ENSOCUG00000002309) #21 CBX1 (ENSOCUG00000008021) #22 NFE2L1 (ENSOCUG00000022298) #23 COPZ2 (ENSOCUG00000001802) #24 CDK5RAP3 (ENSOCUG00000012325) #25 PRR15L (ENSOCUG00000017489) #27 PNPO (ENSOCUG00000017484) #28 SP2 (ENSOCUG00000027415) #29 SP6 (ENSOCUG00000023482) #30 SCRN2 (ENSOCUG00000009457) #31 LRRC46 (ENSOCUG00000009453) #32 MRPL10 (ENSOCUG00000009452) #33 OSBPL7 (ENSOCUG00000009447) #34 TBX21 (ENSOCUG00000012907) #35 TBKBP1 (ENSOCUG00000014771) #36 KPNB1 (ENSOCUG00000015425) #37 NPEPPS (ENSOCUG00000015748) Glires DUPLICATION Glires ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.a ##22 Rodentia ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.a ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.a ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.a ##22 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 56 ENSJJAG00000003530 ENSJJAG00000010301 #7 Ttll6 (ENSJJAG00000010253) #9 Hoxb13 (ENSJJAG00000010401) #10 Hoxb9 (ENSJJAG00000009821) #11 Hoxb8 (ENSJJAG00000002398) #12 Hoxb7 (ENSJJAG00000001284) #13 Hoxb6 (ENSJJAG00000000997) #14 Hoxb5 (ENSJJAG00000000763) #15 Hoxb4 (ENSJJAG00000002642) #16 Hoxb3 (ENSJJAG00000007804) #17 Hoxb2 (ENSJJAG00000009465) #18 Hoxb1 (ENSJJAG00000001073) #19 Skap1 (ENSJJAG00000003458) #20 ENSJJAG00000005754 #21 ENSJJAG00000007753 ##22 Nfe2l1 (ENSJJAG00000006432) #23 Copz2 (ENSJJAG00000001025) #24 ENSJJAG00000002511 #25 Prr15l (ENSJJAG00000006478) #27 Pnpo (ENSJJAG00000023608) #28 Sp2 (ENSJJAG00000003061) #29 Sp6 (ENSJJAG00000006452) #30 Scrn2 (ENSJJAG00000023635) #31 Lrrc46 (ENSJJAG00000010412) #32 Mrpl10 (ENSJJAG00000004046) #33 Osbpl7 (ENSJJAG00000004477) #34 Tbx21 (ENSJJAG00000000813) #35 ENSJJAG00000010141 #36 Kpnb1 (ENSJJAG00000010909) #37 Npepps (ENSJJAG00000005423) Lesser Egyptian jerboa MODERN SPECIES 66 Mllt3 (ENSJJAG00000012196) ENSJJAG00000018542 Slc24a2 (ENSJJAG00000020852) Acer2 (ENSJJAG00000020889) ENSJJAG00000011871 Dennd4c (ENSJJAG00000022774) Plin2 (ENSJJAG00000014665) Haus6 (ENSJJAG00000020343) Rraga (ENSJJAG00000008212) ENSJJAG00000015289 ENSJJAG00000016096 ENSJJAG00000014571 ENSJJAG00000010272 ENSJJAG00000024102 Sh3gl2 (ENSJJAG00000017618) ENSJJAG00000011696 ##22 ENSJJAG00000008188 ENSJJAG00000022818 Bnc2 (ENSJJAG00000004324) ENSJJAG00000019056 Ccdc171 (ENSJJAG00000020916) ENSJJAG00000015360 Snapc3 (ENSJJAG00000018408) Ttc39b (ENSJJAG00000004238) ENSJJAG00000010564 ENSJJAG00000015519 Cer1 (ENSJJAG00000023511) Zdhhc21 (ENSJJAG00000002851) Nfib (ENSJJAG00000013052) ENSJJAG00000010432 Mpdz (ENSJJAG00000012097) Lagomorpha ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.a ##22 Rabbit MODERN SPECIES 14 DCAF13 (ENSOCUG00000009197) SLC25A32 (ENSOCUG00000009191) RIMS2 (ENSOCUG00000011775) ENSOCUG00000033506 ENSOCUG00000025731 ENSOCUG00000004398 DPYS (ENSOCUG00000011148) LRP12 (ENSOCUG00000002245) ZFPM2 (ENSOCUG00000005930) OXR1 (ENSOCUG00000000462) ABRA (ENSOCUG00000006570) ENSOCUG00000023959 ANGPT1 (ENSOCUG00000003722) RSPO2 (ENSOCUG00000000779) EIF3E (ENSOCUG00000008050) ENSOCUG00000027337 ##22 EMC2 (ENSOCUG00000002461) TMEM74 (ENSOCUG00000000175) ENSOCUG00000037614 ENSOCUG00000039638 TRHR (ENSOCUG00000003833) NUDCD1 (ENSOCUG00000004673) ENY2 (ENSOCUG00000030501) PKHD1L1 (ENSOCUG00000004688) EBAG9 (ENSOCUG00000004726) SYBU (ENSOCUG00000004730) ENSOCUG00000023338 KCNV1 (ENSOCUG00000017285) ENSOCUG00000031581 ENSOCUG00000022022 ENSOCUG00000021881 Glires ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.b ##22 Rodentia ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.b ##22 Rodentia_B ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.b ##22 Myomorpha ANCESTRAL SPECIES ENSGT00940000154152.d.b.cc.b ##22 Lesser Egyptian jerboa MODERN SPECIES 65 Prss23 (ENSJJAG00000010057) Me3 (ENSJJAG00000022815) Ccdc81 (ENSJJAG00000011496) ENSJJAG00000022293 Hikeshi (ENSJJAG00000012398) Eed (ENSJJAG00000016121) ENSJJAG00000001614 Ccdc83 (ENSJJAG00000017603) ENSJJAG00000017139 ENSJJAG00000010545 Crebzf (ENSJJAG00000010759) Tmem126a (ENSJJAG00000008852) Tmem126b (ENSJJAG00000012522) Dlg2 (ENSJJAG00000023731) ENSJJAG00000010286 ENSJJAG00000014690 ##22 ENSJJAG00000011365 ENSJJAG00000023792 Ankrd42 (ENSJJAG00000023528) ENSJJAG00000012172 Rab30 (ENSJJAG00000020064) Ddias (ENSJJAG00000009611) Prcp (ENSJJAG00000022121) ENSJJAG00000015258 Tree shrew MODERN SPECIES 88 HOXB2 (ENSTBEG00000015126) #18 SKAP1 (ENSTBEG00000015048) #20 SNX11 (ENSTBEG00000014960) #21 CBX1 (ENSTBEG00000014931) #22 Primates ANCESTRAL SPECIES 3 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00980000199681 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00950000185410 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Strepsirrhini ANCESTRAL SPECIES 4 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00950000185410 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590.h #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Bushbaby MODERN SPECIES 133 CALCOCO2 (ENSOGAG00000011709) #8 TTLL6 (ENSOGAG00000011701) #9 HOXB13 (ENSOGAG00000032643) #10 ENSOGAG00000034464 HOXB9 (ENSOGAG00000008668) #11 HOXB8 (ENSOGAG00000029480) #12 HOXB7 (ENSOGAG00000008667) #13 HOXB6 (ENSOGAG00000008661) #14 HOXB5 (ENSOGAG00000032432) #15 HOXB4 (ENSOGAG00000033709) #16 HOXB3 (ENSOGAG00000032090) #17 HOXB2 (ENSOGAG00000029280) #18 HOXB1 (ENSOGAG00000031645) #19 SKAP1 (ENSOGAG00000015855) #20 SNX11 (ENSOGAG00000015854) #21 CBX1 (ENSOGAG00000005658) #22 NFE2L1 (ENSOGAG00000025191) #23 COPZ2 (ENSOGAG00000004954) #24 CDK5RAP3 (ENSOGAG00000004951) #25 PRR15L (ENSOGAG00000006187) #27 PNPO (ENSOGAG00000006186) #28 SP2 (ENSOGAG00000030380) #29 SP6 (ENSOGAG00000030282) #30 SCRN2 (ENSOGAG00000006181) #31 LRRC46 (ENSOGAG00000006177) #32 MRPL10 (ENSOGAG00000006173) #33 OSBPL7 (ENSOGAG00000006166) #34 TBX21 (ENSOGAG00000006160) #35 TBKBP1 (ENSOGAG00000032523) #36 KPNB1 (ENSOGAG00000006153) #37 NPEPPS (ENSOGAG00000006365) Lemuriformes ANCESTRAL SPECIES 2 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00950000185410 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590.h #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 7 TTLL6 (ENSMICG00000007549) #9 HOXB13 (ENSMICG00000007546) #10 HOXB9 (ENSMICG00000038413) #11 HOXB8 (ENSMICG00000045961) #12 HOXB7 (ENSMICG00000007539) #13 HOXB6 (ENSMICG00000042216) #14 HOXB5 (ENSMICG00000047139) #15 HOXB4 (ENSMICG00000043173) #16 HOXB3 (ENSMICG00000007522) #17 HOXB2 (ENSMICG00000038222) #18 HOXB1 (ENSMICG00000048152) #19 SKAP1 (ENSMICG00000047158) #20 ENSMICG00000029923 SNX11 (ENSMICG00000014741) #21 NFE2L1 (ENSMICG00000014716) #23 ENSMICG00000009510 #22 COPZ2 (ENSMICG00000014097) #24 CDK5RAP3 (ENSMICG00000014077) #25 ENSMICG00000014065 #28 SP2 (ENSMICG00000036051) #29 SP6 (ENSMICG00000047695) #30 SCRN2 (ENSMICG00000004823) #31 LRRC46 (ENSMICG00000004816) #32 MRPL10 (ENSMICG00000048091) #33 OSBPL7 (ENSMICG00000004799) #34 TBX21 (ENSMICG00000035345) #35 TBKBP1 (ENSMICG00000012069) #36 KPNB1 (ENSMICG00000012059) #37 NPEPPS (ENSMICG00000012034) MRPL45 (ENSMICG00000000626) GPR179 (ENSMICG00000000628) Mouse lemur MODERN SPECIES 27 SHANK2 (ENSMICG00000035602) DHCR7 (ENSMICG00000017094) NADSYN1 (ENSMICG00000017100) LGALS12 (ENSMICG00000010263) TSPAN32 (ENSMICG00000045977) ENSMICG00000034071 ENSMICG00000044072 ENSMICG00000032218 ENSMICG00000043027 ENSMICG00000044564 ENSMICG00000044796 ENSMICG00000033487 ENSMICG00000008357 PTPRJ (ENSMICG00000005145) ENSMICG00000036331 ENSMICG00000032012 #22 ENSMICG00000003903 ENSMICG00000008279 ENSMICG00000048041 ENSMICG00000002840 ENSMICG00000045888 NUP160 (ENSMICG00000011344) FNBP4 (ENSMICG00000011329) AGBL2 (ENSMICG00000011310) ENSMICG00000034382 ENSMICG00000005314 MTCH2 (ENSMICG00000027810) FAM180B (ENSMICG00000001091) NDUFS3 (ENSMICG00000045989) KBTBD4 (ENSMICG00000001087) PTPMT1 (ENSMICG00000028273) Lemuriformes_a ANCESTRAL SPECIES ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00950000185410 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590.h #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 Greater bamboo lemur MODERN SPECIES 168 ENSPSMG00000020369 #7 CALCOCO2 (ENSPSMG00000020308) #8 ENSPSMG00000020243 #9 HOXB13 (ENSPSMG00000020237) #10 HOXB9 (ENSPSMG00000020232) #11 HOXB8 (ENSPSMG00000020227) #12 HOXB7 (ENSPSMG00000020218) #13 HOXB6 (ENSPSMG00000020209) #14 HOXB5 (ENSPSMG00000020200) #15 HOXB4 (ENSPSMG00000020187) #16 HOXB3 (ENSPSMG00000020182) #17 HOXB2 (ENSPSMG00000020176) #18 HOXB1 (ENSPSMG00000020167) #19 SKAP1 (ENSPSMG00000020161) #20 SNX11 (ENSPSMG00000020139) #21 CBX1 (ENSPSMG00000020119) #22 Coquerels sifaka DUPLICATION Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 1048 IDS (ENSPCOG00000027114) ENSPCOG00000027307 ENSPCOG00000021033 AFF2 (ENSPCOG00000013963) ENSPCOG00000028627 FMR1 (ENSPCOG00000028651) ENSPCOG00000023359 ENSPCOG00000022948 ENSPCOG00000026333 SLITRK4 (ENSPCOG00000001878) ENSPCOG00000010819 ENSPCOG00000025982 #22 LDOC1 (ENSPCOG00000026405) ENSPCOG00000021671 CXorf66 (ENSPCOG00000016018) ATP11C (ENSPCOG00000016658) MCF2 (ENSPCOG00000017797) F9 (ENSPCOG00000021350) ENSPCOG00000013349 Coquerels sifaka MODERN SPECIES 191 ENSPCOG00000023950 ZBBX (ENSPCOG00000014280) ENSPCOG00000008201 SERPINI2 (ENSPCOG00000013259) WDR49 (ENSPCOG00000017901) PDCD10 (ENSPCOG00000027074) SERPINI1 (ENSPCOG00000016496) ENSPCOG00000027401 GOLIM4 (ENSPCOG00000018718) ENSPCOG00000026712 #22 MECOM (ENSPCOG00000010261) ACTRT3 (ENSPCOG00000023479) MYNN (ENSPCOG00000019266) ENSPCOG00000014403 LRRIQ4 (ENSPCOG00000022428) LRRC31 (ENSPCOG00000015937) SAMD7 (ENSPCOG00000018768) SEC62 (ENSPCOG00000022507) ENSPCOG00000022512 PHC3 (ENSPCOG00000028442) PRKCI (ENSPCOG00000013776) SKIL (ENSPCOG00000011788) ENSPCOG00000012902 CLDN11 (ENSPCOG00000002365) SLC7A14 (ENSPCOG00000006725) Coquerels sifaka MODERN SPECIES 120 ENSPCOG00000008741 #7 CALCOCO2 (ENSPCOG00000021998) #8 TTLL6 (ENSPCOG00000021391) #9 HOXB13 (ENSPCOG00000018182) #10 HOXB9 (ENSPCOG00000027130) #11 HOXB8 (ENSPCOG00000024853) #12 HOXB7 (ENSPCOG00000028248) #13 HOXB6 (ENSPCOG00000019931) #14 HOXB5 (ENSPCOG00000015692) #15 HOXB4 (ENSPCOG00000022963) #16 HOXB3 (ENSPCOG00000020113) #17 HOXB2 (ENSPCOG00000017380) #18 HOXB1 (ENSPCOG00000025930) #19 SKAP1 (ENSPCOG00000022221) #20 SNX11 (ENSPCOG00000011015) #21 ENSPCOG00000010902 #22 NFE2L1 (ENSPCOG00000021740) #23 COPZ2 (ENSPCOG00000018359) #24 CDK5RAP3 (ENSPCOG00000016598) #25 PNPO (ENSPCOG00000017906) #28 SP2 (ENSPCOG00000017198) #29 SP6 (ENSPCOG00000008529) #30 SCRN2 (ENSPCOG00000014438) #31 LRRC46 (ENSPCOG00000015829) #32 MRPL10 (ENSPCOG00000025492) #33 OSBPL7 (ENSPCOG00000019714) #34 TBX21 (ENSPCOG00000014387) #35 TBKBP1 (ENSPCOG00000026427) #36 KPNB1 (ENSPCOG00000026259) #37 ENSPCOG00000014331 ENSPCOG00000027158 Haplorrhini ANCESTRAL SPECIES 6 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00980000199681 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Tarsier DUPLICATION Tarsier MODERN SPECIES 1781 ENSTSYG00000029511 #22 Tarsier MODERN SPECIES 7208 SKAP1 (ENSTSYG00000008218) #20 SNX11 (ENSTSYG00000035487) #21 CBX1 (ENSTSYG00000034806) #22 NFE2L1 (ENSTSYG00000011468) #23 COPZ2 (ENSTSYG00000030074) #24 CDK5RAP3 (ENSTSYG00000010313) #25 PNPO (ENSTSYG00000002012) #28 SP2 (ENSTSYG00000013766) #29 SP6 (ENSTSYG00000031192) #30 SCRN2 (ENSTSYG00000003730) #31 LRRC46 (ENSTSYG00000003710) #32 MRPL10 (ENSTSYG00000034759) #33 OSBPL7 (ENSTSYG00000014378) #34 Tarsier MODERN SPECIES 6671 MINPP1 (ENSTSYG00000001663) ENSTSYG00000004769 #22 ENSTSYG00000037067 ASAH2 (ENSTSYG00000036300) A1CF (ENSTSYG00000001755) Simiiformes ANCESTRAL SPECIES 7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Catarrhini ANCESTRAL SPECIES 8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Hominoidea ANCESTRAL SPECIES 13 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713.h.b #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246.i Hominidae ANCESTRAL SPECIES 16 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713.h.a #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246.i Homo/Pan/Gorilla group ANCESTRAL SPECIES 1 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713.h.a.a.b #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246.j.b.a Gorilla MODERN SPECIES 18 CALCOCO2 (ENSGGOG00000005537) #8 TTLL6 (ENSGGOG00000001947) #9 HOXB13 (ENSGGOG00000001945) #10 ENSGGOG00000042122 PRAC1 (ENSGGOG00000027105) ENSGGOG00000036688 #11 HOXB8 (ENSGGOG00000039810) #12 HOXB7 (ENSGGOG00000002637) #13 HOXB6 (ENSGGOG00000002634) #14 HOXB5 (ENSGGOG00000023582) #15 HOXB3 (ENSGGOG00000012838) #17 HOXB2 (ENSGGOG00000009910) #18 HOXB1 (ENSGGOG00000009904) #19 SKAP1 (ENSGGOG00000012624) #20 ENSGGOG00000025896 CBX1 (ENSGGOG00000024063) #22 NFE2L1 (ENSGGOG00000002268) #23 COPZ2 (ENSGGOG00000002264) #24 ENSGGOG00000022994 #25 PRR15L (ENSGGOG00000037816) #27 PNPO (ENSGGOG00000003786) #28 SP2 (ENSGGOG00000005330) #29 SP6 (ENSGGOG00000036261) #30 SCRN2 (ENSGGOG00000004547) #31 LRRC46 (ENSGGOG00000012667) #32 MRPL10 (ENSGGOG00000015353) #33 OSBPL7 (ENSGGOG00000015344) #34 TBX21 (ENSGGOG00000002208) #35 TBKBP1 (ENSGGOG00000002206) #36 KPNB1 (ENSGGOG00000008089) #37 ENSGGOG00000022991 Homo/Pan group ANCESTRAL SPECIES 2 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713.h.a.a.b #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246.j.b.a Human MODERN SPECIES 8 TTLL6 (ENSG00000170703) #9 HOXB13 (ENSG00000159184) #10 PRAC2 (ENSG00000229637) PRAC1 (ENSG00000159182) HOXB9 (ENSG00000170689) #11 HOXB8 (ENSG00000120068) #12 HOXB7 (ENSG00000260027) #13 HOXB6 (ENSG00000108511) #14 HOXB5 (ENSG00000120075) #15 HOXB4 (ENSG00000182742) #16 HOXB3 (ENSG00000120093) #17 HOXB2 (ENSG00000173917) #18 HOXB1 (ENSG00000120094) #19 SKAP1 (ENSG00000141293) #20 SNX11 (ENSG00000002919) #21 CBX1 (ENSG00000108468) #22 NFE2L1 (ENSG00000082641) #23 COPZ2 (ENSG00000005243) #24 CDK5RAP3 (ENSG00000108465) #25 PRR15L (ENSG00000167183) #27 PNPO (ENSG00000108439) #28 SP2 (ENSG00000167182) #29 SP6 (ENSG00000189120) #30 SCRN2 (ENSG00000141295) #31 LRRC46 (ENSG00000141294) #32 MRPL10 (ENSG00000159111) #33 OSBPL7 (ENSG00000006025) #34 TBX21 (ENSG00000073861) #35 TBKBP1 (ENSG00000198933) #36 KPNB1 (ENSG00000108424) #37 NPEPPS (ENSG00000141279) Pan ANCESTRAL SPECIES 3 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713.h.a.a.b #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246.j.b.a Bonobo MODERN SPECIES 8 CALCOCO2 (ENSPPAG00000037813) #8 TTLL6 (ENSPPAG00000036197) #9 HOXB13 (ENSPPAG00000027794) #10 PRAC1 (ENSPPAG00000014004) HOXB9 (ENSPPAG00000028486) #11 HOXB8 (ENSPPAG00000034804) #12 HOXB7 (ENSPPAG00000010963) #13 HOXB6 (ENSPPAG00000032229) #14 HOXB5 (ENSPPAG00000039181) #15 HOXB4 (ENSPPAG00000040659) #16 HOXB3 (ENSPPAG00000032630) #17 HOXB2 (ENSPPAG00000027417) #18 HOXB1 (ENSPPAG00000039129) #19 SKAP1 (ENSPPAG00000039277) #20 SNX11 (ENSPPAG00000033185) #21 ENSPPAG00000030413 #22 NFE2L1 (ENSPPAG00000031737) #23 COPZ2 (ENSPPAG00000043351) #24 ENSPPAG00000029145 #25 PRR15L (ENSPPAG00000003316) #27 PNPO (ENSPPAG00000038148) #28 SP2 (ENSPPAG00000027065) #29 SP6 (ENSPPAG00000026169) #30 SCRN2 (ENSPPAG00000028214) #31 LRRC46 (ENSPPAG00000038983) #32 MRPL10 (ENSPPAG00000034452) #33 OSBPL7 (ENSPPAG00000027887) #34 TBX21 (ENSPPAG00000033988) #35 ENSPPAG00000040088 #36 KPNB1 (ENSPPAG00000028842) #37 ENSPPAG00000041383 Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 3 C12H12orf56 (ENSPTRG00000005172) ENSPTRG00000050395 KICS2 (ENSPTRG00000005171) SRGAP1 (ENSPTRG00000005170) ENSPTRG00000047501 RXYLT1 (ENSPTRG00000005169) DPY19L2 (ENSPTRG00000005168) ENSPTRG00000051663 AVPR1A (ENSPTRG00000005167) ENSPTRG00000049319 PPM1H (ENSPTRG00000005165) MON2 (ENSPTRG00000005164) USP15 (ENSPTRG00000005163) ENSPTRG00000048315 TAFA2 (ENSPTRG00000005162) ENSPTRG00000038999 #22 SLC16A7 (ENSPTRG00000005160) ENSPTRG00000044366 LRIG3 (ENSPTRG00000005159) ATP23 (ENSPTRG00000005156) CTDSP2 (ENSPTRG00000005155) AVIL (ENSPTRG00000005153) TSFM (ENSPTRG00000005152) EEF1AKMT3 (ENSPTRG00000005151) METTL1 (ENSPTRG00000005150) CYP27B1 (ENSPTRG00000005149) MARCHF9 (ENSPTRG00000005148) CDK4 (ENSPTRG00000005147) TSPAN31 (ENSPTRG00000005146) AGAP2 (ENSPTRG00000005145) OS9 (ENSPTRG00000005144) Chimpanzee MODERN SPECIES 8 TTLL6 (ENSPTRG00000009361) #9 HOXB13 (ENSPTRG00000009360) #10 PRAC2 (ENSPTRG00000048455) PRAC1 (ENSPTRG00000009359) HOXB9 (ENSPTRG00000009358) #11 HOXB8 (ENSPTRG00000048497) #12 HOXB7 (ENSPTRG00000009357) #13 HOXB6 (ENSPTRG00000009356) #14 HOXB5 (ENSPTRG00000009355) #15 HOXB4 (ENSPTRG00000009354) #16 HOXB3 (ENSPTRG00000052423) #17 HOXB2 (ENSPTRG00000009352) #18 HOXB1 (ENSPTRG00000009351) #19 SKAP1 (ENSPTRG00000009350) #20 SNX11 (ENSPTRG00000009349) #21 CBX1 (ENSPTRG00000052115) #22 NFE2L1 (ENSPTRG00000022631) #23 COPZ2 (ENSPTRG00000009346) #24 CDK5RAP3 (ENSPTRG00000009345) #25 PRR15L (ENSPTRG00000047216) #27 PNPO (ENSPTRG00000009343) #28 SP2 (ENSPTRG00000009342) #29 SP6 (ENSPTRG00000009340) #30 SCRN2 (ENSPTRG00000009339) #31 LRRC46 (ENSPTRG00000009338) #32 MRPL10 (ENSPTRG00000009337) #33 OSBPL7 (ENSPTRG00000009336) #34 TBX21 (ENSPTRG00000009335) #35 TBKBP1 (ENSPTRG00000009334) #36 KPNB1 (ENSPTRG00000009333) #37 NPEPPS (ENSPTRG00000009330) Gibbon DUPLICATION Gibbon MODERN SPECIES 4 ENSNLEG00000029795 SEMA4F (ENSNLEG00000001057) HK2 (ENSNLEG00000001062) POLE4 (ENSNLEG00000027475) TACR1 (ENSNLEG00000031195) EVA1A (ENSNLEG00000001133) MRPL19 (ENSNLEG00000001142) ENSNLEG00000028366 GCFC2 (ENSNLEG00000001166) ENSNLEG00000032694 LRRTM4 (ENSNLEG00000001198) ENSNLEG00000035977 ENSNLEG00000032509 REG3G (ENSNLEG00000001205) REG3A (ENSNLEG00000001228) ENSNLEG00000031764 #22 CTNNA2 (ENSNLEG00000001259) ENSNLEG00000028214 ENSNLEG00000031099 ENSNLEG00000029568 DNAH6 (ENSNLEG00000001321) ENSNLEG00000034028 TRABD2A (ENSNLEG00000001389) KCMF1 (ENSNLEG00000001418) TCF7L1 (ENSNLEG00000001462) ENSNLEG00000028501 ENSNLEG00000032991 ENSNLEG00000035166 TGOLN2 (ENSNLEG00000001482) ENSNLEG00000001496 RETSAT (ENSNLEG00000001497) Gibbon MODERN SPECIES 105 SNF8 (ENSNLEG00000002743) ENSNLEG00000002739 ATP5MC1 (ENSNLEG00000002718) CALCOCO2 (ENSNLEG00000002619) #8 TTLL6 (ENSNLEG00000002601) #9 HOXB13 (ENSNLEG00000002594) #10 ENSNLEG00000036120 ENSNLEG00000029075 HOXB6 (ENSNLEG00000002585) #14 HOXB5 (ENSNLEG00000002574) #15 HOXB4 (ENSNLEG00000002570) #16 HOXB2 (ENSNLEG00000002566) #18 ENSNLEG00000018815 #19 SKAP1 (ENSNLEG00000002519) #20 SNX11 (ENSNLEG00000002479) #21 ENSNLEG00000002435 #22 NFE2L1 (ENSNLEG00000002415) #23 ENSNLEG00000002409 #24 ENSNLEG00000002109 #25 PRR15L (ENSNLEG00000002102) #27 PNPO (ENSNLEG00000002062) #28 ENSNLEG00000002058 #29 SP6 (ENSNLEG00000002050) #30 SCRN2 (ENSNLEG00000001940) #31 LRRC46 (ENSNLEG00000001902) #32 MRPL10 (ENSNLEG00000001803) #33 OSBPL7 (ENSNLEG00000001657) #34 ENSNLEG00000001655 #35 ENSNLEG00000032565 #36 KPNB1 (ENSNLEG00000001446) #37 Cercopithecidae ANCESTRAL SPECIES 6 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Cercopithecinae ANCESTRAL SPECIES 4 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Vervet Monkey MODERN SPECIES 7 CALCOCO2 (ENSCSAG00000002506) #8 TTLL6 (ENSCSAG00000002511) #9 HOXB13 (ENSCSAG00000002517) #10 HOXB9 (ENSCSAG00000002521) #11 HOXB8 (ENSCSAG00000002523) #12 HOXB7 (ENSCSAG00000002524) #13 HOXB6 (ENSCSAG00000002526) #14 HOXB5 (ENSCSAG00000002529) #15 HOXB4 (ENSCSAG00000002530) #16 HOXB3 (ENSCSAG00000002533) #17 HOXB2 (ENSCSAG00000002536) #18 HOXB1 (ENSCSAG00000002538) #19 ENSCSAG00000019043 SKAP1 (ENSCSAG00000002542) #20 SNX11 (ENSCSAG00000002545) #21 CBX1 (ENSCSAG00000002547) #22 NFE2L1 (ENSCSAG00000002550) #23 COPZ2 (ENSCSAG00000002558) #24 CDK5RAP3 (ENSCSAG00000002562) #25 PRR15L (ENSCSAG00000019042) #27 PNPO (ENSCSAG00000002565) #28 SP2 (ENSCSAG00000002567) #29 SP6 (ENSCSAG00000019041) #30 SCRN2 (ENSCSAG00000002569) #31 LRRC46 (ENSCSAG00000002574) #32 MRPL10 (ENSCSAG00000002576) #33 OSBPL7 (ENSCSAG00000002580) #34 TBX21 (ENSCSAG00000002587) #35 TBKBP1 (ENSCSAG00000002598) #36 KPNB1 (ENSCSAG00000002605) #37 NPEPPS (ENSCSAG00000002610) Cercopithecinae_a ANCESTRAL SPECIES 4 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Cercopithecinae_b ANCESTRAL SPECIES 20 ENSGT00950000183198.c.a.a.b ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Olive baboon DUPLICATION Olive baboon MODERN SPECIES 3 MUC15 (ENSPANG00000025794) SLC5A12 (ENSPANG00000015045) FIBIN (ENSPANG00000047960) BBOX1 (ENSPANG00000007553) ENSPANG00000004062 CCDC34 (ENSPANG00000026210) LGR4 (ENSPANG00000017039) LIN7C (ENSPANG00000030729) BDNF (ENSPANG00000007184) ENSPANG00000048654 ENSPANG00000042438 KIF18A (ENSPANG00000007185) METTL15 (ENSPANG00000008467) ENSPANG00000042193 KCNA4 (ENSPANG00000040485) ENSPANG00000025704 #22 FSHB (ENSPANG00000038639) ARL14EP (ENSPANG00000035131) MPPED2 (ENSPANG00000007977) DCDC1 (ENSPANG00000019082) ENSPANG00000037947 ENSPANG00000042363 ENSPANG00000043615 IMMP1L (ENSPANG00000030673) ELP4 (ENSPANG00000025795) PAX6 (ENSPANG00000005448) ENSPANG00000047733 ENSPANG00000049611 ENSPANG00000018409 ENSPANG00000031209 ENSPANG00000038077 Olive baboon MODERN SPECIES 8 TTLL6 (ENSPANG00000022885) #9 HOXB13 (ENSPANG00000048407) #10 PRAC1 (ENSPANG00000034268) HOXB9 (ENSPANG00000022896) #11 HOXB8 (ENSPANG00000022895) #12 HOXB7 (ENSPANG00000041701) #13 HOXB6 (ENSPANG00000022891) #14 HOXB5 (ENSPANG00000022889) #15 HOXB4 (ENSPANG00000022888) #16 ENSPANG00000045928 HOXB2 (ENSPANG00000034765) #18 HOXB1 (ENSPANG00000022886) #19 SKAP1 (ENSPANG00000022897) #20 ENSPANG00000026200 SNX11 (ENSPANG00000022898) #21 CBX1 (ENSPANG00000022906) #22 NFE2L1 (ENSPANG00000022904) #23 COPZ2 (ENSPANG00000022903) #24 CDK5RAP3 (ENSPANG00000022902) #25 PNPO (ENSPANG00000022924) #28 SP2 (ENSPANG00000022922) #29 SP6 (ENSPANG00000017158) #30 SCRN2 (ENSPANG00000022920) #31 LRRC46 (ENSPANG00000022918) #32 MRPL10 (ENSPANG00000022926) #33 OSBPL7 (ENSPANG00000022928) #34 TBX21 (ENSPANG00000022107) #35 TBKBP1 (ENSPANG00000022108) #36 KPNB1 (ENSPANG00000022099) #37 NPEPPS (ENSPANG00000022080) MRPL45 (ENSPANG00000022083) Cercopithecinae_d ANCESTRAL SPECIES 7 ENSGT00950000183198.c.a.a.b ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Sooty mangabey MODERN SPECIES 663 OBSL1 (ENSCATG00000042212) INHA (ENSCATG00000040688) STK11IP (ENSCATG00000037453) SLC4A3 (ENSCATG00000020520) EPHA4 (ENSCATG00000038507) ENSCATG00000030612 PAX3 (ENSCATG00000036737) ENSCATG00000029364 SGPP2 (ENSCATG00000009677) FARSB (ENSCATG00000036168) MOGAT1 (ENSCATG00000044167) ACSL3 (ENSCATG00000014428) KCNE4 (ENSCATG00000032630) SCG2 (ENSCATG00000042539) AP1S3 (ENSCATG00000034517) ENSCATG00000033962 #22 WDFY1 (ENSCATG00000041479) MRPL44 (ENSCATG00000035507) SERPINE2 (ENSCATG00000038444) FAM124B (ENSCATG00000043202) CUL3 (ENSCATG00000039150) CCDC195 (ENSCATG00000026924) ENSCATG00000020736 DOCK10 (ENSCATG00000041202) NYAP2 (ENSCATG00000030114) ENSCATG00000018702 IRS1 (ENSCATG00000030134) RHBDD1 (ENSCATG00000043331) COL4A4 (ENSCATG00000024575) COL4A3 (ENSCATG00000034996) MFF (ENSCATG00000031653) Drill DUPLICATION Drill MODERN SPECIES 1463 ENSMLEG00000028034 ENSMLEG00000005635 #22 FSHB (ENSMLEG00000037161) ARL14EP (ENSMLEG00000032547) MPPED2 (ENSMLEG00000038736) DCDC1 (ENSMLEG00000039147) DNAJC24 (ENSMLEG00000042215) IMMP1L (ENSMLEG00000017715) ELP4 (ENSMLEG00000028701) PAX6 (ENSMLEG00000030045) RCN1 (ENSMLEG00000041748) WT1 (ENSMLEG00000040206) EIF3M (ENSMLEG00000000401) CCDC73 (ENSMLEG00000039999) PRRG4 (ENSMLEG00000039168) QSER1 (ENSMLEG00000027791) DEPDC7 (ENSMLEG00000042787) Drill MODERN SPECIES 1297 CALCOCO2 (ENSMLEG00000034129) #8 TTLL6 (ENSMLEG00000023683) #9 HOXB13 (ENSMLEG00000043860) #10 PRAC1 (ENSMLEG00000033309) HOXB9 (ENSMLEG00000030602) #11 HOXB8 (ENSMLEG00000007179) #12 HOXB7 (ENSMLEG00000042331) #13 HOXB6 (ENSMLEG00000029580) #14 HOXB5 (ENSMLEG00000009970) #15 HOXB3 (ENSMLEG00000026268) #17 HOXB4 (ENSMLEG00000029897) #16 HOXB2 (ENSMLEG00000031955) #18 HOXB1 (ENSMLEG00000037557) #19 SKAP1 (ENSMLEG00000029308) #20 SNX11 (ENSMLEG00000039008) #21 CBX1 (ENSMLEG00000038745) #22 NFE2L1 (ENSMLEG00000039330) #23 COPZ2 (ENSMLEG00000039090) #24 CDK5RAP3 (ENSMLEG00000033869) #25 PRR15L (ENSMLEG00000020212) #27 PNPO (ENSMLEG00000040872) #28 SP2 (ENSMLEG00000032228) #29 SP6 (ENSMLEG00000027177) #30 SCRN2 (ENSMLEG00000041491) #31 LRRC46 (ENSMLEG00000031583) #32 MRPL10 (ENSMLEG00000042780) #33 OSBPL7 (ENSMLEG00000040663) #34 Drill MODERN SPECIES 1155 AP1S3 (ENSMLEG00000036867) ENSMLEG00000030562 #22 WDFY1 (ENSMLEG00000034928) MRPL44 (ENSMLEG00000029688) SERPINE2 (ENSMLEG00000031695) FAM124B (ENSMLEG00000027453) CUL3 (ENSMLEG00000025201) CCDC195 (ENSMLEG00000008972) ENSMLEG00000036150 DOCK10 (ENSMLEG00000038949) Macaca ANCESTRAL SPECIES 4 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Macaca_a ANCESTRAL SPECIES 4 ENSGT00950000183198.c.a.a.b ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00980000199681 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.a.d.a.b.b ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Crab-eating macaque DUPLICATION Crab-eating macaque MODERN SPECIES 5 ENSMFAG00000053728 ENSMFAG00000063367 BBOX1 (ENSMFAG00000044005) CCDC34 (ENSMFAG00000031912) LGR4 (ENSMFAG00000034294) LIN7C (ENSMFAG00000065010) ENSMFAG00000061810 BDNF (ENSMFAG00000003789) KIF18A (ENSMFAG00000002311) METTL15 (ENSMFAG00000043868) ENSMFAG00000054669 ENSMFAG00000004430 ENSMFAG00000062924 ENSMFAG00000050246 ENSMFAG00000049275 ENSMFAG00000001947 #22 FSHB (ENSMFAG00000039808) ARL14EP (ENSMFAG00000001165) MPPED2 (ENSMFAG00000045441) DCDC1 (ENSMFAG00000040936) IMMP1L (ENSMFAG00000030415) ENSMFAG00000060830 ENSMFAG00000059878 ELP4 (ENSMFAG00000001333) PAX6 (ENSMFAG00000019311) ENSMFAG00000044003 RCN1 (ENSMFAG00000029569) ENSMFAG00000059799 WT1 (ENSMFAG00000030746) ENSMFAG00000062574 EIF3M (ENSMFAG00000040767) Crab-eating macaque MODERN SPECIES 7 PRAC1 (ENSMFAG00000039547) ENSMFAG00000047612 HOXB9 (ENSMFAG00000062545) #11 HOXB8 (ENSMFAG00000033418) #12 HOXB7 (ENSMFAG00000039298) #13 HOXB6 (ENSMFAG00000002294) #14 HOXB5 (ENSMFAG00000042418) #15 HOXB4 (ENSMFAG00000041000) #16 ENSMFAG00000062776 HOXB2 (ENSMFAG00000034146) #18 HOXB1 (ENSMFAG00000052359) #19 SKAP1 (ENSMFAG00000038763) #20 ENSMFAG00000048147 ENSMFAG00000047205 SNX11 (ENSMFAG00000001845) #21 CBX1 (ENSMFAG00000036790) #22 NFE2L1 (ENSMFAG00000035583) #23 COPZ2 (ENSMFAG00000045896) #24 CDK5RAP3 (ENSMFAG00000046364) #25 PRR15L (ENSMFAG00000030161) #27 PNPO (ENSMFAG00000039285) #28 SP2 (ENSMFAG00000038712) #29 ENSMFAG00000052999 SP6 (ENSMFAG00000030247) #30 ENSMFAG00000030335 #31 LRRC46 (ENSMFAG00000031915) #32 OSBPL7 (ENSMFAG00000001330) #34 TBX21 (ENSMFAG00000042504) #35 TBKBP1 (ENSMFAG00000001252) #36 KPNB1 (ENSMFAG00000030197) #37 NPEPPS (ENSMFAG00000003608) Rhesus DUPLICATION Rhesus MODERN SPECIES 5 ENSMMUG00000003022 FIBIN (ENSMMUG00000013358) ENSMMUG00000054980 ENSMMUG00000014840 ENSMMUG00000042640 BBOX1 (ENSMMUG00000000316) CCDC34 (ENSMMUG00000023490) LGR4 (ENSMMUG00000023491) LIN7C (ENSMMUG00000023119) ENSMMUG00000053553 BDNF (ENSMMUG00000008634) KIF18A (ENSMMUG00000013613) METTL15 (ENSMMUG00000013616) ENSMMUG00000065335 KCNA4 (ENSMMUG00000055210) ENSMMUG00000016472 #22 FSHB (ENSMMUG00000042298) ARL14EP (ENSMMUG00000017590) MPPED2 (ENSMMUG00000017592) ENSMMUG00000006842 ENSMMUG00000049710 IMMP1L (ENSMMUG00000016806) DNAJC24 (ENSMMUG00000016807) PAX6 (ENSMMUG00000016810) ENSMMUG00000043127 RCN1 (ENSMMUG00000018360) ENSMMUG00000041430 WT1 (ENSMMUG00000009881) ENSMMUG00000060261 EIF3M (ENSMMUG00000009026) CCDC73 (ENSMMUG00000009028) Rhesus MODERN SPECIES 7 ENSMMUG00000016305 TTLL6 (ENSMMUG00000003436) #9 HOXB13 (ENSMMUG00000060879) #10 PRAC1 (ENSMMUG00000053394) HOXB9 (ENSMMUG00000052505) #11 HOXB8 (ENSMMUG00000020868) #12 HOXB7 (ENSMMUG00000055324) #13 HOXB6 (ENSMMUG00000062283) #14 HOXB5 (ENSMMUG00000051420) #15 ENSMMUG00000045203 HOXB4 (ENSMMUG00000052130) #16 HOXB2 (ENSMMUG00000057001) #18 HOXB1 (ENSMMUG00000022212) #19 SKAP1 (ENSMMUG00000050742) #20 SNX11 (ENSMMUG00000020658) #21 CBX1 (ENSMMUG00000019882) #22 NFE2L1 (ENSMMUG00000021935) #23 COPZ2 (ENSMMUG00000021934) #24 CDK5RAP3 (ENSMMUG00000004760) #25 PRR15L (ENSMMUG00000050551) #27 PNPO (ENSMMUG00000003325) #28 SP2 (ENSMMUG00000004765) #29 ENSMMUG00000053935 SP6 (ENSMMUG00000061952) #30 MRPL10 (ENSMMUG00000021486) #31 LRRC46 (ENSMMUG00000061605) #32 OSBPL7 (ENSMMUG00000019039) #34 TBX21 (ENSMMUG00000057231) #35 TBKBP1 (ENSMMUG00000019762) #36 KPNB1 (ENSMMUG00000019760) #37 NPEPPS (ENSMMUG00000005869) Pig-tailed macaque DUPLICATION Pig-tailed macaque MODERN SPECIES 494 HOXB13 (ENSMNEG00000036275) #10 PRAC2 (ENSMNEG00000038796) PRAC1 (ENSMNEG00000045191) HOXB9 (ENSMNEG00000045476) #11 HOXB8 (ENSMNEG00000034944) #12 HOXB7 (ENSMNEG00000040001) #13 HOXB6 (ENSMNEG00000042554) #14 HOXB5 (ENSMNEG00000039003) #15 HOXB4 (ENSMNEG00000032435) #16 HOXB3 (ENSMNEG00000032425) #17 HOXB2 (ENSMNEG00000043416) #18 HOXB1 (ENSMNEG00000036848) #19 ENSMNEG00000033446 SKAP1 (ENSMNEG00000015541) #20 SNX11 (ENSMNEG00000034920) #21 CBX1 (ENSMNEG00000039720) #22 NFE2L1 (ENSMNEG00000037921) #23 COPZ2 (ENSMNEG00000038720) #24 CDK5RAP3 (ENSMNEG00000029039) #25 PRR15L (ENSMNEG00000028174) #27 PNPO (ENSMNEG00000037010) #28 SP2 (ENSMNEG00000029577) #29 SP6 (ENSMNEG00000023861) #30 SCRN2 (ENSMNEG00000031786) #31 LRRC46 (ENSMNEG00000037035) #32 MRPL10 (ENSMNEG00000030905) #33 OSBPL7 (ENSMNEG00000042829) #34 TBX21 (ENSMNEG00000036627) #35 TBKBP1 (ENSMNEG00000039009) #36 KPNB1 (ENSMNEG00000040927) #37 NPEPPS (ENSMNEG00000000757) Pig-tailed macaque MODERN SPECIES 485 KIF18A (ENSMNEG00000036550) METTL15 (ENSMNEG00000037173) ENSMNEG00000007805 ENSMNEG00000032978 #22 FSHB (ENSMNEG00000009932) ARL14EP (ENSMNEG00000027874) MPPED2 (ENSMNEG00000033181) DCDC1 (ENSMNEG00000028720) DNAJC24 (ENSMNEG00000038746) IMMP1L (ENSMNEG00000002551) ELP4 (ENSMNEG00000044060) PAX6 (ENSMNEG00000035602) RCN1 (ENSMNEG00000032501) ENSMNEG00000036921 WT1 (ENSMNEG00000010071) EIF3M (ENSMNEG00000002856) CCDC73 (ENSMNEG00000037225) PRRG4 (ENSMNEG00000035106) QSER1 (ENSMNEG00000038918) Rhinopithecus ANCESTRAL SPECIES 19 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT00940000165611 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603.b #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898 #37 ENSGT00940000155246 Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 585 CALCOCO2 (ENSRROG00000042598) #8 TTLL6 (ENSRROG00000044208) #9 HOXB13 (ENSRROG00000042147) #10 PRAC2 (ENSRROG00000033208) PRAC1 (ENSRROG00000039006) HOXB9 (ENSRROG00000044654) #11 HOXB8 (ENSRROG00000045349) #12 HOXB7 (ENSRROG00000035066) #13 HOXB6 (ENSRROG00000028093) #14 HOXB5 (ENSRROG00000030674) #15 HOXB3 (ENSRROG00000037630) #17 HOXB2 (ENSRROG00000044849) #18 HOXB1 (ENSRROG00000042747) #19 SKAP1 (ENSRROG00000031517) #20 SNX11 (ENSRROG00000029464) #21 CBX1 (ENSRROG00000041227) #22 NFE2L1 (ENSRROG00000044774) #23 COPZ2 (ENSRROG00000030969) #24 CDK5RAP3 (ENSRROG00000044651) #25 PRR15L (ENSRROG00000009484) #27 PNPO (ENSRROG00000044027) #28 SP2 (ENSRROG00000037481) #29 SP6 (ENSRROG00000008983) #30 SCRN2 (ENSRROG00000037252) #31 LRRC46 (ENSRROG00000039559) #32 MRPL10 (ENSRROG00000033938) #33 OSBPL7 (ENSRROG00000017659) #34 Golden snub-nosed monkey MODERN SPECIES 3050 ENSRROG00000029058 AP1S3 (ENSRROG00000031051) ENSRROG00000028651 #22 WDFY1 (ENSRROG00000037667) MRPL44 (ENSRROG00000032230) SERPINE2 (ENSRROG00000040515) FAM124B (ENSRROG00000032916) CUL3 (ENSRROG00000020617) CCDC195 (ENSRROG00000037146) Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 2881 ENSRBIG00000038144 #22 Black snub-nosed monkey MODERN SPECIES 1661 TTLL6 (ENSRBIG00000035925) #9 HOXB13 (ENSRBIG00000035598) #10 PRAC2 (ENSRBIG00000032698) PRAC1 (ENSRBIG00000041996) HOXB9 (ENSRBIG00000035654) #11 HOXB8 (ENSRBIG00000043329) #12 HOXB7 (ENSRBIG00000039896) #13 HOXB6 (ENSRBIG00000029050) #14 HOXB5 (ENSRBIG00000015821) #15 HOXB4 (ENSRBIG00000036141) #16 HOXB3 (ENSRBIG00000036705) #17 HOXB2 (ENSRBIG00000029105) #18 HOXB1 (ENSRBIG00000041849) #19 SKAP1 (ENSRBIG00000042563) #20 SNX11 (ENSRBIG00000030129) #21 ENSRBIG00000027048 #22 NFE2L1 (ENSRBIG00000034817) #23 COPZ2 (ENSRBIG00000038810) #24 CDK5RAP3 (ENSRBIG00000039441) #25 PRR15L (ENSRBIG00000030176) #27 PNPO (ENSRBIG00000042160) #28 SP2 (ENSRBIG00000032526) #29 ENSRBIG00000039530 TXNDC2 (ENSRBIG00000040108) ENSRBIG00000040735 OCRL (ENSRBIG00000041702) Platyrrhini ANCESTRAL SPECIES 1 ENSGT00940000159720 #7 ENSGT00950000183025.a #8 ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898.a #37 ENSGT00550000074898.b #37 Mas night monkey MODERN SPECIES 349 NDUFS3 (ENSANAG00000030907) KBTBD4 (ENSANAG00000029505) ENSANAG00000033117 CELF1 (ENSANAG00000031770) RAPSN (ENSANAG00000022248) ENSANAG00000037076 SLC39A13 (ENSANAG00000027448) SPI1 (ENSANAG00000029485) MYBPC3 (ENSANAG00000023289) MADD (ENSANAG00000024603) NR1H3 (ENSANAG00000037990) ACP2 (ENSANAG00000032696) DDB2 (ENSANAG00000036510) PACSIN3 (ENSANAG00000030038) ARFGAP2 (ENSANAG00000031850) ENSANAG00000026796 #22 CSTPP1 (ENSANAG00000037882) LRP4 (ENSANAG00000038492) ENSANAG00000038320 CKAP5 (ENSANAG00000031236) F2 (ENSANAG00000036904) ZNF408 (ENSANAG00000036294) ARHGAP1 (ENSANAG00000038289) ATG13 (ENSANAG00000036615) HARBI1 (ENSANAG00000038532) AMBRA1 (ENSANAG00000037577) CHRM4 (ENSANAG00000007361) ENSANAG00000030861 DGKZ (ENSANAG00000023123) CREB3L1 (ENSANAG00000023783) ENSANAG00000034457 Cebidae ANCESTRAL SPECIES 10 ENSGT00940000154298.a.b ENSGT00940000161434 #9 ENSGT00940000159029 #10 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00940000154172.gb.b.b.b ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898.a #37 ENSGT00550000074898.b #37 Cebidae_a ANCESTRAL SPECIES 1 ENSGT00940000159029 #10 ENSGT00860000135909 ENSGT01050000247531 ENSGT00940000161386 #11 ENSGT00940000161529 #12 ENSGT00940000161230 #13 ENSGT00940000161108 #14 ENSGT00940000158354 #15 ENSGT00940000162072 #16 ENSGT00940000159774 #17 ENSGT00940000155029.c.b #18 ENSGT00940000159503 #19 ENSGT00940000154172.gb.b.b.b ENSGT00390000017856.b #20 ENSGT00940000160113 #21 ENSGT00940000154152.d.b #22 ENSGT00950000182892.a.b.a.a #23 ENSGT00390000004405.b #24 ENSGT00390000000713 #25 ENSGT00940000154534.a #27 ENSGT00390000011219 #28 ENSGT00940000159590 #29 ENSGT00940000161498 #30 ENSGT00390000013474.b.a #31 ENSGT00940000161315 #32 ENSGT00390000000603 #33 ENSGT00940000157439 #34 ENSGT00940000160397 #35 ENSGT00940000153704.B #36 ENSGT00550000074898.a #37 ENSGT00550000074898.b #37 Capuchin MODERN SPECIES 228 HOXB13 (ENSCCAG00000036871) #10 ENSCCAG00000036164 ENSCCAG00000019672 HOXB7 (ENSCCAG00000023947) #13 HOXB9 (ENSCCAG00000035938) #11 HOXB8 (ENSCCAG00000026051) #12 HOXB6 (ENSCCAG00000022842) #14 HOXB5 (ENSCCAG00000036867) #15 HOXB4 (ENSCCAG00000020311) #16 HOXB3 (ENSCCAG00000013598) #17 HOXB2 (ENSCCAG00000024035) #18 HOXB1 (ENSCCAG00000027667) #19 ENSCCAG00000019181 SKAP1 (ENSCCAG00000035663) #20 SNX11 (ENSCCAG00000030167) #21 CBX1 (ENSCCAG00000025085) #22 NFE2L1 (ENSCCAG00000029090) #23 COPZ2 (ENSCCAG00000021292) #24 CDK5RAP3 (ENSCCAG00000038053) #25 PNPO (ENSCCAG00000029175) #28 SP2 (ENSCCAG00000038047) #29 SP6 (ENSCCAG00000020330) #30 SCRN2 (ENSCCAG00000031435) #31 LRRC46 (ENSCCAG00000030568) #32 MRPL10 (ENSCCAG00000023150) #33 OSBPL7 (ENSCCAG00000034097) #34 TBX21 (ENSCCAG00000026112) #35 TBKBP1 (ENSCCAG00000026129) #36 ENSCCAG00000029263 #37 NPEPPS (ENSCCAG00000035472) MRPL45 (ENSCCAG00000034579) Marmoset DUPLICATION Marmoset MODERN SPECIES 19 ENSCJAG00000007377 SAMD13 (ENSCJAG00000038186) PRKACB (ENSCJAG00000007331) TTLL7 (ENSCJAG00000007255) ENSCJAG00000073777 ENSCJAG00000084484 ENSCJAG00000079597 ENSCJAG00000084592 ENSCJAG00000085077 ADGRL2 (ENSCJAG00000007190) ENSCJAG00000085941 ENSCJAG00000079091 ENSCJAG00000084751 ADGRL4 (ENSCJAG00000007171) PTGFR (ENSCJAG00000007162) ENSCJAG00000023449 #22 GIPC2 (ENSCJAG00000059871) DNAJB4 (ENSCJAG00000045975) FUBP1 (ENSCJAG00000007062) NEXN (ENSCJAG00000006981) USP33 (ENSCJAG00000006932) ZZZ3 (ENSCJAG00000006894) ENSCJAG00000054142 AK5 (ENSCJAG00000006856) ENSCJAG00000084117 PIGK (ENSCJAG00000048297) ST6GALNAC5 (ENSCJAG00000081117) ENSCJAG00000087327 ST6GALNAC3 (ENSCJAG00000006823) ASB17 (ENSCJAG00000006817) MSH4 (ENSCJAG00000006791) Marmoset MODERN SPECIES 17 CALCOCO2 (ENSCJAG00000007375) #8 TTLL6 (ENSCJAG00000007395) #9 HOXB13 (ENSCJAG00000007437) #10 HOXB9 (ENSCJAG00000007442) #11 HOXB8 (ENSCJAG00000045730) #12 HOXB7 (ENSCJAG00000007457) #13 HOXB6 (ENSCJAG00000007467) #14 HOXB5 (ENSCJAG00000007472) #15 HOXB4 (ENSCJAG00000007480) #16 HOXB3 (ENSCJAG00000007487) #17 HOXB2 (ENSCJAG00000007494) #18 HOXB1 (ENSCJAG00000007496) #19 ENSCJAG00000038853 SKAP1 (ENSCJAG00000007504) #20 SNX11 (ENSCJAG00000039549) #21 CBX1 (ENSCJAG00000042052) #22 NFE2L1 (ENSCJAG00000007542) #23 ENSCJAG00000058197 COPZ2 (ENSCJAG00000007567) #24 CDK5RAP3 (ENSCJAG00000007669) #25 PRR15L (ENSCJAG00000044487) #27 PNPO (ENSCJAG00000007693) #28 SP2 (ENSCJAG00000007713) #29 SP6 (ENSCJAG00000043946) #30 SCRN2 (ENSCJAG00000047705) #31 LRRC46 (ENSCJAG00000007776) #32 MRPL10 (ENSCJAG00000007787) #33 OSBPL7 (ENSCJAG00000007585) #34 TBX21 (ENSCJAG00000007796) #35 TBKBP1 (ENSCJAG00000045710) #36 KPNB1 (ENSCJAG00000007834) #37