Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000156065	ENSGT00390000013444.a.a	ENSGT00390000008666 #7	ENSGT00940000154859.p.a.a #8	ENSGT01020000230346.A #9	ENSGT00390000007753.b #10	ENSGT00940000153986.a #11	ENSGT00390000006080 #13	ENSGT01050000244902.b.c.a #14	ENSGT01050000244902.b.c.b #15	ENSGT00940000157901 #16	ENSGT00390000005163 #17	ENSGT01100000263497.C #18	ENSGT00940000155517 #19	ENSGT00940000155959 #21	ENSGT00940000154071.A #22	ENSGT00950000183148.a #23	ENSGT00940000161597 #24	ENSGT00660000095541.a.b #25	ENSGT00940000156106 #27	ENSGT00940000158704 #28	ENSGT00940000158072 #29	ENSGT00940000159132.a #31	ENSGT00940000156502 #32	ENSGT00490000043421 #33	ENSGT00940000158324 #34	ENSGT00940000157135 #36	ENSGT00940000156593	ENSGT00390000018516	ENSGT00940000157150	ENSGT00940000157509
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000014618 #7	STYX (ENSHGLG00000009818) #8	PSMC6 (ENSHGLG00000012892) #9	ERO1A (ENSHGLG00000009956) #10	GPR137C (ENSHGLG00000014860) #11	ENSHGLG00000050455 #12	TXNDC16 (ENSHGLG00000010925) #13	PTGER2 (ENSHGLG00000040443) #14	PTGDR (ENSHGLG00000011361) #15	NID2 (ENSHGLG00000012453) #16	ENSHGLG00000011931 #17	GNG2 (ENSHGLG00000037657) #18	FRMD6 (ENSHGLG00000013454) #19	ENSHGLG00000046758 #20	TMX1 (ENSHGLG00000012700) #21	TRIM9 (ENSHGLG00000011753) #22	PYGL (ENSHGLG00000011923) #23	ABHD12B (ENSHGLG00000017092) #24	NIN (ENSHGLG00000010798) #25	ENSHGLG00000039372 #26	ENSHGLG00000014486 #27	ATL1 (ENSHGLG00000017094) #28	MAP4K5 (ENSHGLG00000011509) #29	ENSHGLG00000007162 #30	CDKL1 (ENSHGLG00000042701) #31	DMAC2L (ENSHGLG00000042464) #32	L2HGDH (ENSHGLG00000010171) #33	SOS2 (ENSHGLG00000011807) #34	ENSHGLG00000044017 #35	METTL21D (ENSHGLG00000011833) #36	ENSHGLG00000012671 #37
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000156065	ENSGT00390000013444.a.a	ENSGT00390000008666 #7	ENSGT00940000154859.p.b ##8	ENSGT01020000230346.A #9	ENSGT00390000007753.b #10	ENSGT00940000153986.a #11	ENSGT00390000006080 #13	ENSGT01050000244902.b.c.a #14	ENSGT01050000244902.b.c.b #15	ENSGT00940000157901 #16	ENSGT00390000005163 #17	ENSGT01100000263497.C #18	ENSGT00940000155517 #19	ENSGT00940000155959 #21	ENSGT00940000154071.A #22	ENSGT00950000183148.a #23	ENSGT00940000161597 #24	ENSGT00660000095541.a.b #25	ENSGT00940000156106 #27	ENSGT00940000158704 #28	ENSGT00940000158072 #29	ENSGT00940000159132.a #31	ENSGT00940000156502 #32	ENSGT00490000043421 #33	ENSGT00940000158324 #34	ENSGT00940000157135 #36	ENSGT00940000156593	ENSGT00390000018516	ENSGT00940000157150	ENSGT00940000157509
Guinea pig	MODERN SPECIES	23	DDHD1 (ENSCPOG00000012886)	FERMT2 (ENSCPOG00000009476)	GNPNAT1 (ENSCPOG00000039080) #7	STYX (ENSCPOG00000035253) ##8	PSMC6 (ENSCPOG00000009477) #9	ERO1A (ENSCPOG00000007439) #10	GPR137C (ENSCPOG00000007435) #11	TXNDC16 (ENSCPOG00000012597) #13	PTGER2 (ENSCPOG00000031528) #14	PTGDR (ENSCPOG00000006861) #15	NID2 (ENSCPOG00000001320) #16	RTRAF (ENSCPOG00000040014) #17	GNG2 (ENSCPOG00000039841) #18	FRMD6 (ENSCPOG00000003119) #19	TMX1 (ENSCPOG00000031959) #21	TRIM9 (ENSCPOG00000010456) #22	PYGL (ENSCPOG00000006129) #23	ABHD12B (ENSCPOG00000014872) #24	ENSCPOG00000008548 ##20	NIN (ENSCPOG00000006119) #25	SAV1 (ENSCPOG00000031808) #27	ATL1 (ENSCPOG00000040134) #28	MAP4K5 (ENSCPOG00000014479) #29	CDKL1 (ENSCPOG00000034915) #31	DMAC2L (ENSCPOG00000014471) #32	L2HGDH (ENSCPOG00000010700) #33	SOS2 (ENSCPOG00000010690) #34	VCPKMT (ENSCPOG00000011127) #36	ARF6 (ENSCPOG00000008137)	NEMF (ENSCPOG00000011839)	KLHDC2 (ENSCPOG00000011835)
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000156065	ENSGT00390000013444.a.a	ENSGT00390000008666 #7	ENSGT00940000154859.p.b ##8	ENSGT01020000230346.A #9	ENSGT00390000007753.b #10	ENSGT00940000153986.a #11	ENSGT00390000006080 #13	ENSGT01050000244902.b.c.a #14	ENSGT01050000244902.b.c.b #15	ENSGT00940000157901 #16	ENSGT00390000005163 #17	ENSGT01100000263497.C #18	ENSGT00940000155517 #19	ENSGT00940000155959 #21	ENSGT00940000154071.A #22	ENSGT00950000183148.a #23	ENSGT00940000161597 #24	ENSGT00660000095541.a.b #25	ENSGT00940000156106 #27	ENSGT00940000158704 #28	ENSGT00940000158072 #29	ENSGT00940000159132.a #31	ENSGT00940000156502 #32	ENSGT00490000043421 #33	ENSGT00940000158324 #34	ENSGT00940000157135 #36	ENSGT00940000156593	ENSGT00390000018516	ENSGT00940000157150	ENSGT00940000157509
Long-tailed chinchilla	MODERN SPECIES	116	DDHD1 (ENSCLAG00000010961)	FERMT2 (ENSCLAG00000011575)	GNPNAT1 (ENSCLAG00000008884) #7	STYX (ENSCLAG00000009165) #8	ENSCLAG00000013485 #9	ERO1A (ENSCLAG00000007882) #10	GPR137C (ENSCLAG00000008672) #11	TXNDC16 (ENSCLAG00000011425) #13	PTGER2 (ENSCLAG00000011936) #14	PTGDR (ENSCLAG00000013111) #15	NID2 (ENSCLAG00000010006) #16	RTRAF (ENSCLAG00000010765) #17	GNG2 (ENSCLAG00000008554) #18	FRMD6 (ENSCLAG00000009659) #19	TMX1 (ENSCLAG00000012466) #21	TRIM9 (ENSCLAG00000016405) #22	PYGL (ENSCLAG00000010968) #23	ABHD12B (ENSCLAG00000009260) #24	NIN (ENSCLAG00000009323) #25	SAV1 (ENSCLAG00000009132) #27	ATL1 (ENSCLAG00000014538) #28	MAP4K5 (ENSCLAG00000012379) #29	CDKL1 (ENSCLAG00000009074) #31	DMAC2L (ENSCLAG00000011112) #32	L2HGDH (ENSCLAG00000007771) #33	SOS2 (ENSCLAG00000010549) #34	VCPKMT (ENSCLAG00000009925) #36	ARF6 (ENSCLAG00000018079)	NEMF (ENSCLAG00000012469)	KLHDC2 (ENSCLAG00000016294)	KLHDC1 (ENSCLAG00000011115)
Degu	MODERN SPECIES	143	TXNDC16 (ENSODEG00000010904) #13	ENSODEG00000019848	ENSODEG00000019833	PTGER2 (ENSODEG00000011973) #14	PTGDR (ENSODEG00000012057) #15	ENSODEG00000013970	ENSODEG00000011443	ENSODEG00000011601	NID2 (ENSODEG00000012414) #16	ENSODEG00000010999 #17	ENSODEG00000011408	GNG2 (ENSODEG00000011344) #18	ENSODEG00000019879	FRMD6 (ENSODEG00000011173) #19	ENSODEG00000011543 #21	TRIM9 (ENSODEG00000011533) #22	PYGL (ENSODEG00000011563) #23	ABHD12B (ENSODEG00000011544) #24	NIN (ENSODEG00000010876) #25	SAV1 (ENSODEG00000012011) #27	ATL1 (ENSODEG00000011772) #28	ENSODEG00000011847 #29	ENSODEG00000011537	CDKL1 (ENSODEG00000011708) #31	DMAC2L (ENSODEG00000011553) #32	L2HGDH (ENSODEG00000012605) #33	ENSODEG00000011751	ENSODEG00000012187	ENSODEG00000012746	ENSODEG00000013334 #34	VCPKMT (ENSODEG00000011299) #36