Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000163715.b	ENSGT01030000234515.a.b.b	ENSGT00950000183158.B.b	ENSGT00950000183158.B.a.a	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000154595	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000161659	ENSGT00940000159478	ENSGT00940000154886.a.a #22	ENSGT00910000144227	ENSGT00390000006553	ENSGT00990000211583	ENSGT00940000155528	ENSGT00940000164644	ENSGT00530000063460.B	ENSGT00940000159489	ENSGT00390000012482	ENSGT00950000182904.a.b.b	ENSGT00940000165052	ENSGT00940000160748	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000160905	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Amniota	ANCESTRAL SPECIES	4	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Mammalia	ANCESTRAL SPECIES	24	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d
Theria	ANCESTRAL SPECIES	30	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Eutheria	ANCESTRAL SPECIES	7	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Primates	ANCESTRAL SPECIES	9	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00390000005811.w.a #13	ENSGT00940000158634 #14	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523.r #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Cebidae	ANCESTRAL SPECIES	7	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00390000005811.w.a #13	ENSGT00940000158634 #14	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523.r #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Cebidae_a	ANCESTRAL SPECIES	92	ENSGT01100000263667	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00390000005811.w.a #13	ENSGT00940000158634 #14	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523.r #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.ab #32	ENSGT00530000063402.a.h #33	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Bolivian squirrel monkey	MODERN SPECIES	118	ENSSBOG00000000121 #7	MAMDC2 (ENSSBOG00000034000) #8	CFAP95 (ENSSBOG00000031509) #9	PTAR1 (ENSSBOG00000023248) #10	APBA1 (ENSSBOG00000029213) #11	ENTREP1 (ENSSBOG00000021064) #12	FXN (ENSSBOG00000022179) #13	TJP2 (ENSSBOG00000035815) #14	PIP5K1B (ENSSBOG00000027534) #15	TMEM252 (ENSSBOG00000022996) #16	PGM5 (ENSSBOG00000030297) #17	ENSSBOG00000020533 #18	ENSSBOG00000031336 #19	ENSSBOG00000032210 #20	DOCK8 (ENSSBOG00000020599) #21	KANK1 (ENSSBOG00000032525) #22	DMRT1 (ENSSBOG00000027694) #23	DMRT3 (ENSSBOG00000027585) #24	DMRT2 (ENSSBOG00000010665) #25	ENSSBOG00000019886 #26	SMARCA2 (ENSSBOG00000034827) #27	ENSSBOG00000020747 #28	VLDLR (ENSSBOG00000031091) #29	KCNV2 (ENSSBOG00000023504) #30	PUM3 (ENSSBOG00000028066) #31	ENSSBOG00000022458 #32	ENSSBOG00000026932 #33	ENSSBOG00000016907 #34	RFX3 (ENSSBOG00000031103) #35	GLIS3 (ENSSBOG00000032997) #36	ENSSBOG00000019687 #37
Capuchin	MODERN SPECIES	155	MAMDC2 (ENSCCAG00000021404) #8	CFAP95 (ENSCCAG00000037801) #9	PTAR1 (ENSCCAG00000007749) #10	APBA1 (ENSCCAG00000021335) #11	FAM189A2 (ENSCCAG00000021474) #12	FXN (ENSCCAG00000000008) #13	TJP2 (ENSCCAG00000028382) #14	PIP5K1B (ENSCCAG00000030428) #15	TMEM252 (ENSCCAG00000036655) #16	PGM5 (ENSCCAG00000032767) #17	ENSCCAG00000021273 #18	ENSCCAG00000034259 ##19	ENSCCAG00000033543 #20	DOCK8 (ENSCCAG00000036920) #21	ENSCCAG00000032927	KANK1 (ENSCCAG00000037749) #22
Marmoset	MODERN SPECIES		GNAQ (ENSCJAG00000003268)	ENSCJAG00000003266	ENSCJAG00000072998	ENSCJAG00000084872	ENSCJAG00000054232	ENSCJAG00000032275 ##19	ENSCJAG00000003147	ENSCJAG00000074827	ENSCJAG00000085396	ENSCJAG00000073324	ENSCJAG00000040149 #18	ENSCJAG00000010423 #19	ENSCJAG00000054365	ENSCJAG00000078334	DOCK8 (ENSCJAG00000010485) #21	KANK1 (ENSCJAG00000010595) #22	ENSCJAG00000084547	DMRT3 (ENSCJAG00000063670) #24	DMRT2 (ENSCJAG00000010690) #25	SMARCA2 (ENSCJAG00000010710) #27	ENSCJAG00000042690	VLDLR (ENSCJAG00000010772) #29	KCNV2 (ENSCJAG00000042809) #30	PUM3 (ENSCJAG00000010917) #31	RFX3 (ENSCJAG00000010996) #35	GLIS3 (ENSCJAG00000011083) #36	ENSCJAG00000073768	SLC1A1 (ENSCJAG00000011113)	SPATA6L (ENSCJAG00000011136)	PLPP6 (ENSCJAG00000063898)	AK3 (ENSCJAG00000011188)
Mas night monkey	MODERN SPECIES	953	HABP4 (ENSANAG00000035090)	ZNF367 (ENSANAG00000033540)	SLC35D2 (ENSANAG00000028518)	HSD17B3 (ENSANAG00000032106)	ERCC6L2 (ENSANAG00000023092)	PTCH1 (ENSANAG00000029389)	ENSANAG00000030325	FANCC (ENSANAG00000028572)	ENSANAG00000010088	AOPEP (ENSANAG00000030033)	ENSANAG00000026785	FBP2 (ENSANAG00000031346)	ENSANAG00000032497 #19	ENSANAG00000032441 #20	DOCK8 (ENSANAG00000027539) #21	KANK1 (ENSANAG00000025213) #22
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00390000017892 #10	ENSGT00910000147698	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00390000017892 #10	ENSGT00910000147698	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Hominidae	ANCESTRAL SPECIES	10	ENSGT00390000017892 #10	ENSGT00910000147698	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353.a #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00910000147698	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353.a.a.a #18	ENSGT00940000163353.a.a.b #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Gorilla	MODERN SPECIES	22	MAMDC2 (ENSGGOG00000027946) #8	CFAP95 (ENSGGOG00000005837) #9	PTAR1 (ENSGGOG00000008891) #10	APBA1 (ENSGGOG00000016410) #11	ENSGGOG00000011230 #12	TJP2 (ENSGGOG00000010313) #14	FXN (ENSGGOG00000007636) #13	PIP5K1B (ENSGGOG00000013948) #15	PABIR1 (ENSGGOG00000034987)	TMEM252 (ENSGGOG00000015514) #16	ENSGGOG00000037092 #17	FOXD4 (ENSGGOG00000003673) #18	ENSGGOG00000022867 #19	ENSGGOG00000015757 #20	DOCK8 (ENSGGOG00000008791) #21	KANK1 (ENSGGOG00000005466) #22	DMRT1 (ENSGGOG00000013298) #23	DMRT3 (ENSGGOG00000013303) #24	DMRT2 (ENSGGOG00000025101) #25	ENSGGOG00000039224 #28	SMARCA2 (ENSGGOG00000000513) #27	ENSGGOG00000038609	VLDLR (ENSGGOG00000001362) #29	KCNV2 (ENSGGOG00000000231) #30	PUM3 (ENSGGOG00000006143) #31	ENSGGOG00000022372 #32	RFX3 (ENSGGOG00000003805) #35	GLIS3 (ENSGGOG00000038970) #36	SLC1A1 (ENSGGOG00000000262)	PLPP6 (ENSGGOG00000040149)	SPATA6L (ENSGGOG00000034964)
Homo/Pan group	ANCESTRAL SPECIES	27														ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Pan	ANCESTRAL SPECIES	26														ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	22											ENSPTRG00000031407	ENSPTRG00000020994	ENSPTRG00000052275	DOCK8 (ENSPTRG00000020725) #21	ENSPTRG00000044534	KANK1 (ENSPTRG00000041819) #22	DMRT1 (ENSPTRG00000020728) #23	DMRT3 (ENSPTRG00000020729) #24	DMRT2 (ENSPTRG00000020730) #25	SMARCA2 (ENSPTRG00000051168) #27	ENSPTRG00000052144 #28	ENSPTRG00000047815	VLDLR (ENSPTRG00000020732) #29	KCNV2 (ENSPTRG00000020734) #30	PUM3 (ENSPTRG00000020735) #31	ENSPTRG00000046907 #32	RFX3 (ENSPTRG00000048670) #35	ENSPTRG00000050873	GLIS3 (ENSPTRG00000020738) #36	SLC1A1 (ENSPTRG00000020739)	SPATA6L (ENSPTRG00000020740)
Chimpanzee	MODERN SPECIES	902																ENSPTRG00000043491 #22
Human	MODERN SPECIES	21												WASHC1 (ENSG00000181404)	FOXD4 (ENSG00000170122) #18	ZNG1A (ENSG00000172785)	DOCK8 (ENSG00000107099) #21	KANK1 (ENSG00000107104) #22	DMRT1 (ENSG00000137090) #23	DMRT3 (ENSG00000064218) #24	DMRT2 (ENSG00000173253) #25	SMARCA2 (ENSG00000080503) #27	VLDLR (ENSG00000147852) #29	KCNV2 (ENSG00000168263) #30	PUM3 (ENSG00000080608) #31	RFX3 (ENSG00000080298) #35	GLIS3 (ENSG00000107249) #36	SLC1A1 (ENSG00000106688)	SPATA6L (ENSG00000106686)	PLPP6 (ENSG00000205808)	CDC37L1 (ENSG00000106993)	AK3 (ENSG00000147853)	RCL1 (ENSG00000120158)
Orangutan	MODERN SPECIES	22	MAMDC2 (ENSPPYG00000019281) #8	CFAP95 (ENSPPYG00000019280) #9	PTAR1 (ENSPPYG00000019279) #10	APBA1 (ENSPPYG00000019278) #11	ENTREP1 (ENSPPYG00000019277) #12	TJP2 (ENSPPYG00000019275) #14	PRKACG (ENSPPYG00000019273)	ENSPPYG00000019272 #15	PABIR1 (ENSPPYG00000019271)	TMEM252 (ENSPPYG00000019269) #16	PGM5 (ENSPPYG00000019268) #17	ENSPPYG00000041038 #18	ZNG1A (ENSPPYG00000019265) #19	ENSPPYG00000030930 #20	DOCK8 (ENSPPYG00000019264) #21	KANK1 (ENSPPYG00000019262) #22	DMRT1 (ENSPPYG00000019261) #23	DMRT3 (ENSPPYG00000019260) #24	DMRT2 (ENSPPYG00000035747) #25	SMARCA2 (ENSPPYG00000019258) #27	ENSPPYG00000041078	VLDLR (ENSPPYG00000019257) #29	KCNV2 (ENSPPYG00000019256) #30	PUM3 (ENSPPYG00000019255) #31	ENSPPYG00000019254 #32	RFX3 (ENSPPYG00000019253) #35	GLIS3 (ENSPPYG00000019250) #36	SLC1A1 (ENSPPYG00000019249)	PLPP6 (ENSPPYG00000019248)	SPATA6L (ENSPPYG00000019247)	CDC37L1 (ENSPPYG00000019246)
Gibbon	MODERN SPECIES	10				ENSNLEG00000031982 ##13	ENSNLEG00000028086	PIP5K1B (ENSNLEG00000008227) #15	PABIR1 (ENSNLEG00000034102)	ENSNLEG00000030468	TMEM252 (ENSNLEG00000028670) #16	ENSNLEG00000008260 #17	ENSNLEG00000018739	ENSNLEG00000008264 #18	ENSNLEG00000008270 #19	ENSNLEG00000028331 #20	DOCK8 (ENSNLEG00000008451) #21	KANK1 (ENSNLEG00000008510) #22	ENSNLEG00000018709	DMRT1 (ENSNLEG00000008544) #23	DMRT3 (ENSNLEG00000008556) #24	DMRT2 (ENSNLEG00000008564) #25	SMARCA2 (ENSNLEG00000008575) #27	ENSNLEG00000029055 #28	ENSNLEG00000008695	VLDLR (ENSNLEG00000008596) #29	KCNV2 (ENSNLEG00000008701) #30	PUM3 (ENSNLEG00000008712) #31	ENSNLEG00000029981 #32	RFX3 (ENSNLEG00000008785) #35	ENSNLEG00000028743	ENSNLEG00000034817 #36	ENSNLEG00000035119 #36
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00390000017892 #10	ENSGT00910000147698	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896 #36
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT01100000263667	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896 #36	ENSGT00940000155397.b
Drill	MODERN SPECIES	1670	ENSMLEG00000044051	MAMDC2 (ENSMLEG00000030462) #8	CFAP95 (ENSMLEG00000026731) #9	PTAR1 (ENSMLEG00000036036) #10	ENSMLEG00000027123	APBA1 (ENSMLEG00000041409) #11	ENTREP1 (ENSMLEG00000041914) #12	TJP2 (ENSMLEG00000014673) #14	FXN (ENSMLEG00000033476) #13	PIP5K1B (ENSMLEG00000030468) #15	TMEM252 (ENSMLEG00000014717) #16	PGM5 (ENSMLEG00000016495) #17	ENSMLEG00000042816 #19	ENSMLEG00000037825 #20	DOCK8 (ENSMLEG00000039264) #21	KANK1 (ENSMLEG00000040800) #22	DMRT1 (ENSMLEG00000034610) #23	DMRT3 (ENSMLEG00000006865) #24	DMRT2 (ENSMLEG00000031258) #25
Sooty mangabey	MODERN SPECIES	629	ENSCATG00000030908	MAMDC2 (ENSCATG00000032191) #8	CFAP95 (ENSCATG00000038166) #9	PTAR1 (ENSCATG00000044016) #10	APBA1 (ENSCATG00000037394) #11	ENTREP1 (ENSCATG00000029249) #12	TJP2 (ENSCATG00000004548) #14	FXN (ENSCATG00000031607) #13	PIP5K1B (ENSCATG00000030684) #15	TMEM252 (ENSCATG00000030856) #16	PGM5 (ENSCATG00000040727) #17	FOXD4L1 (ENSCATG00000041044) #18	ENSCATG00000043151 #19	ENSCATG00000035578 #20	DOCK8 (ENSCATG00000037251) #21	KANK1 (ENSCATG00000042088) #22	DMRT1 (ENSCATG00000043860) #23	DMRT3 (ENSCATG00000043509) #24	DMRT2 (ENSCATG00000032878) #25	SMARCA2 (ENSCATG00000031470) #27	ENSCATG00000034215	ENSCATG00000014393	VLDLR (ENSCATG00000033177) #29	KCNV2 (ENSCATG00000037552) #30	PUM3 (ENSCATG00000024880) #31	ENSCATG00000034924 #32	ENSCATG00000029808	RFX3 (ENSCATG00000034639) #35	ENSCATG00000030409	GLIS3 (ENSCATG00000038488) #36	SLC1A1 (ENSCATG00000039114)
Olive baboon	MODERN SPECIES	4	PTAR1 (ENSPANG00000025099) #10	APBA1 (ENSPANG00000025107) #11	ENTREP1 (ENSPANG00000025108) #12	ENSPANG00000045180	ENSPANG00000050497	TJP2 (ENSPANG00000025110) #14	FXN (ENSPANG00000025109) #13	PRKACG (ENSPANG00000041885)	PIP5K1B (ENSPANG00000025113) #15	ENSPANG00000042661	TMEM252 (ENSPANG00000025115) #16	PGM5 (ENSPANG00000025114) #17	FOXD4L1 (ENSPANG00000009332) #18	ENSPANG00000025116 #19	DOCK8 (ENSPANG00000025117) #21	KANK1 (ENSPANG00000025125) #22	DMRT1 (ENSPANG00000025124) #23	DMRT3 (ENSPANG00000025123) #24	DMRT2 (ENSPANG00000025122) #25	SMARCA2 (ENSPANG00000025121) #27	ENSPANG00000042712	VLDLR (ENSPANG00000025120) #29	KCNV2 (ENSPANG00000025119) #30	PUM3 (ENSPANG00000025118) #31	RFX3 (ENSPANG00000025143) #35	ENSPANG00000046940	GLIS3 (ENSPANG00000025157) #36	SLC1A1 (ENSPANG00000025156)	SPATA6L (ENSPANG00000025154)	CDC37L1 (ENSPANG00000025153)	AK3 (ENSPANG00000025152)
Macaca	ANCESTRAL SPECIES	10	ENSGT01100000263667	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00940000154318.B.i.b	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00390000004049.cb #32	ENSGT01050000244879.a.a.b #35	ENSGT00940000159989.h	ENSGT00910000146957	ENSGT00940000156896 #36
Pig-tailed macaque	MODERN SPECIES	182			ENSMNEG00000005674	APBA1 (ENSMNEG00000036013) #11	ENTREP1 (ENSMNEG00000040043) #12	TJP2 (ENSMNEG00000036109) #14	FXN (ENSMNEG00000034453) #13	PIP5K1B (ENSMNEG00000011196) #15	TMEM252 (ENSMNEG00000034076) #16	PGM5 (ENSMNEG00000042872) #17	FOXD4L1 (ENSMNEG00000037878) #18	ENSMNEG00000034389 #19	ENSMNEG00000005621	ENSMNEG00000040201 #20	DOCK8 (ENSMNEG00000042769) #21	KANK1 (ENSMNEG00000029060) #22	DMRT1 (ENSMNEG00000036006) #23	DMRT3 (ENSMNEG00000035240) #24	DMRT2 (ENSMNEG00000033851) #25	SMARCA2 (ENSMNEG00000041069) #27	ENSMNEG00000028744	ENSMNEG00000040152	ENSMNEG00000044919	VLDLR (ENSMNEG00000040863) #29	KCNV2 (ENSMNEG00000012723) #30	PUM3 (ENSMNEG00000035288) #31	ENSMNEG00000032248 #32	RFX3 (ENSMNEG00000038188) #35	ENSMNEG00000042708	ENSMNEG00000040313	GLIS3 (ENSMNEG00000032738) #36
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.b.a.b.b.a.a.a.a.a	ENSGT00940000165129	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00390000010770.r	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT01100000264112.b.a	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000031379 #11	ENTREP1 (ENSMFAG00000032849) #12	TJP2 (ENSMFAG00000001435) #14	FXN (ENSMFAG00000041923) #13	ENSMFAG00000053935	ENSMFAG00000063759	PRKACG (ENSMFAG00000030376)	PIP5K1B (ENSMFAG00000038711) #15	TMEM252 (ENSMFAG00000062896) #16	PGM5 (ENSMFAG00000045131) #17	ENSMFAG00000044635 #19	ENSMFAG00000051139	ENSMFAG00000045857 #20	DOCK8 (ENSMFAG00000008069) #21	ENSMFAG00000047680	KANK1 (ENSMFAG00000036947) #22	ENSMFAG00000060255	DMRT3 (ENSMFAG00000045391) #24	DMRT2 (ENSMFAG00000040812) #25	ENSMFAG00000058821 #27	ENSMFAG00000056188 #28	ENSMFAG00000003814 #27	ENSMFAG00000048099	VLDLR (ENSMFAG00000032374) #29	KCNV2 (ENSMFAG00000055892) #30	PUM3 (ENSMFAG00000001430) #31	ENSMFAG00000049201	RFX3 (ENSMFAG00000000237) #35	ENSMFAG00000049557	ENSMFAG00000030908 #36	SLC1A1 (ENSMFAG00000038163)
Rhesus	MODERN SPECIES	6	APBA1 (ENSMMUG00000011401) #11	ENTREP1 (ENSMMUG00000005401) #12	TJP2 (ENSMMUG00000003780) #14	FXN (ENSMMUG00000000357) #13	ENSMMUG00000064488	PRKACG (ENSMMUG00000020379)	PIP5K1B (ENSMMUG00000012472) #15	TMEM252 (ENSMMUG00000056154) #16	PGM5 (ENSMMUG00000008230) #17	FOXD4L1 (ENSMMUG00000023182) #18	ZNG1A (ENSMMUG00000016193) #19	ENSMMUG00000050562	ENSMMUG00000058086 #20	DOCK8 (ENSMMUG00000016976) #21	ENSMMUG00000064601	KANK1 (ENSMMUG00000019862) #22	ENSMMUG00000061012	DMRT3 (ENSMMUG00000044083) #24	DMRT2 (ENSMMUG00000014844) #25	ENSMMUG00000051059	SMARCA2 (ENSMMUG00000015279) #27	VLDLR (ENSMMUG00000015093) #29	KCNV2 (ENSMMUG00000060949) #30	PUM3 (ENSMMUG00000002362) #31	RFX3 (ENSMMUG00000000802) #35	GLIS3 (ENSMMUG00000057568) #36	SLC1A1 (ENSMMUG00000000135)	PLPP6 (ENSMMUG00000059411)	SPATA6L (ENSMMUG00000000136)	CDC37L1 (ENSMMUG00000000141)	AK3 (ENSMMUG00000000143)
Vervet Monkey	MODERN SPECIES	3	CFAP95 (ENSCSAG00000008403) #9	PTAR1 (ENSCSAG00000008413) #10	APBA1 (ENSCSAG00000008422) #11	ENTREP1 (ENSCSAG00000008432) #12	TJP2 (ENSCSAG00000008451) #14	FXN (ENSCSAG00000008470) #13	PRKACG (ENSCSAG00000018499)	PIP5K1B (ENSCSAG00000008511) #15	PABIR1 (ENSCSAG00000018497)	TMEM252 (ENSCSAG00000008529) #16	PGM5 (ENSCSAG00000008540) #17	FOXD4L1 (ENSCSAG00000018495) #18	ENSCSAG00000008555 #19	ENSCSAG00000018493	DOCK8 (ENSCSAG00000008591) #21	KANK1 (ENSCSAG00000008611) #22	DMRT1 (ENSCSAG00000008623) #23	DMRT3 (ENSCSAG00000008627) #24	DMRT2 (ENSCSAG00000008632) #25	SMARCA2 (ENSCSAG00000008650) #27	ENSCSAG00000008657	VLDLR (ENSCSAG00000008671) #29	KCNV2 (ENSCSAG00000008677) #30	PUM3 (ENSCSAG00000008691) #31	RFX3 (ENSCSAG00000008704) #35	ENSCSAG00000008711 #36	SLC1A1 (ENSCSAG00000008723)	PLPP6 (ENSCSAG00000018491)	SPATA6L (ENSCSAG00000008768)	CDC37L1 (ENSCSAG00000008790)	AK3 (ENSCSAG00000008801)
Rhinopithecus	ANCESTRAL SPECIES	227	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00910000147698	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.w.a #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00390000010770.q.a	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00910000146995 #28
Black snub-nosed monkey	MODERN SPECIES	90										TMEM252 (ENSRBIG00000012350) #16	PGM5 (ENSRBIG00000031935) #17	ENSRBIG00000042766 #19	ENSRBIG00000034943	ENSRBIG00000041692 #20	DOCK8 (ENSRBIG00000031277) #21	KANK1 (ENSRBIG00000030454) #22	DMRT1 (ENSRBIG00000040985) #23	DMRT3 (ENSRBIG00000030818) #24	DMRT2 (ENSRBIG00000038326) #25	SMARCA2 (ENSRBIG00000038618) #27	ENSRBIG00000039498	SLC24A3 (ENSRBIG00000026610)	RIN2 (ENSRBIG00000030048)	NAA20 (ENSRBIG00000037845)	CRNKL1 (ENSRBIG00000031770)	CFAP61 (ENSRBIG00000013830)	RALGAPA2 (ENSRBIG00000011325)	ENSRBIG00000044906	KIZ (ENSRBIG00000004023)	XRN2 (ENSRBIG00000036193)
Golden snub-nosed monkey	MODERN SPECIES	1156									ITGB1 (ENSRROG00000044827)	NRP1 (ENSRROG00000036541)	PGM5 (ENSRROG00000035630) #17	ENSRROG00000004214 #19	ENSRROG00000041612	ENSRROG00000031285 #20	DOCK8 (ENSRROG00000030555) #21	KANK1 (ENSRROG00000028581) #22	DMRT1 (ENSRROG00000035111) #23	DMRT3 (ENSRROG00000033393) #24	DMRT2 (ENSRROG00000028272) #25	ENSRROG00000034283 #28	SMARCA2 (ENSRROG00000019271) #27
Tarsier	MODERN SPECIES	5848										PIP5K1B (ENSTSYG00000003509) #15	PABIR1 (ENSTSYG00000002497)	TMEM252 (ENSTSYG00000014722) #16	PGM5 (ENSTSYG00000014721) #17	ENSTSYG00000005361 #19	DOCK8 (ENSTSYG00000002647) #21	KANK1 (ENSTSYG00000004109) #22	DMRT1 (ENSTSYG00000009148) #23	DMRT3 (ENSTSYG00000034280) #24	DMRT2 (ENSTSYG00000008920) #25
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892.c #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896.q #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Bushbaby	MODERN SPECIES	121	CFAP95 (ENSOGAG00000009764) #9	PTAR1 (ENSOGAG00000009760) #10	ENSOGAG00000029654	APBA1 (ENSOGAG00000006812) #11	ENTREP1 (ENSOGAG00000006806) #12	TJP2 (ENSOGAG00000014757) #14	ENSOGAG00000031105 #13	PIP5K1B (ENSOGAG00000009431) #15	PABIR1 (ENSOGAG00000024522)	TMEM252 (ENSOGAG00000015132) #16	PGM5 (ENSOGAG00000015121) #17	ENSOGAG00000029277 #18	ENSOGAG00000002011 #19	DOCK8 (ENSOGAG00000004639) #21	ENSOGAG00000031226	KANK1 (ENSOGAG00000001985) #22	DMRT1 (ENSOGAG00000001989) #23	DMRT3 (ENSOGAG00000026565) #24	DMRT2 (ENSOGAG00000001994) #25	ENSOGAG00000025218	SMARCA2 (ENSOGAG00000017053) #27	VLDLR (ENSOGAG00000013312) #29	KCNV2 (ENSOGAG00000030433) #30	ENSOGAG00000008125 #31	RFX3 (ENSOGAG00000007762) #35	GLIS3 (ENSOGAG00000007376) #36	SLC1A1 (ENSOGAG00000007464)	PLPP6 (ENSOGAG00000007472)	SPATA6L (ENSOGAG00000007468)	CDC37L1 (ENSOGAG00000007475)	AK3 (ENSOGAG00000007477)
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892.c #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896.q #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892.c #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523.s #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896.q #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Coquerels sifaka	MODERN SPECIES	231	ENSPCOG00000024651 #7	MAMDC2 (ENSPCOG00000016914) #8	CFAP95 (ENSPCOG00000027657) #9	PTAR1 (ENSPCOG00000007700) #10	APBA1 (ENSPCOG00000021063) #11	ENSPCOG00000021110 #12	TJP2 (ENSPCOG00000021976) #14	FXN (ENSPCOG00000015134) #13	PIP5K1B (ENSPCOG00000007236) #15	PABIR1 (ENSPCOG00000013255)	TMEM252 (ENSPCOG00000027673) #16	PGM5 (ENSPCOG00000026468) #17	ENSPCOG00000009086 #19	ENSPCOG00000025145 #20	DOCK8 (ENSPCOG00000018543) #21	KANK1 (ENSPCOG00000016148) #22	DMRT1 (ENSPCOG00000004952) #23	DMRT3 (ENSPCOG00000007225) #24	DMRT2 (ENSPCOG00000025937) #25
Greater bamboo lemur	MODERN SPECIES	152	SMC5 (ENSPSMG00000025788)	MAMDC2 (ENSPSMG00000025779) #8	CFAP95 (ENSPSMG00000025775) #9	PTAR1 (ENSPSMG00000025771) #10	APBA1 (ENSPSMG00000025768) #11	ENTREP1 (ENSPSMG00000025763) #12	TJP2 (ENSPSMG00000025742) #14	FXN (ENSPSMG00000025681) #13	PIP5K1B (ENSPSMG00000025678) #15	PABIR1 (ENSPSMG00000025658)	TMEM252 (ENSPSMG00000025655) #16	PGM5 (ENSPSMG00000025652) #17	ENSPSMG00000025644 #18	ENSPSMG00000025574 #19	DOCK8 (ENSPSMG00000025332) #21	KANK1 (ENSPSMG00000025243) #22	DMRT1 (ENSPSMG00000025222) #23	DMRT3 (ENSPSMG00000025210) #24	DMRT2 (ENSPSMG00000025206) #25	ENSPSMG00000025195	SMARCA2 (ENSPSMG00000025173) #27	ENSPSMG00000025075	VLDLR (ENSPSMG00000025041) #29	KCNV2 (ENSPSMG00000024960) #30	ENSPSMG00000024956 #31	ENSPSMG00000024950	RFX3 (ENSPSMG00000024938) #35	GLIS3 (ENSPSMG00000024897) #36	SLC1A1 (ENSPSMG00000024890)	PLPP6 (ENSPSMG00000024881)	SPATA6L (ENSPSMG00000024878)
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	27	CASP12 (ENSMICG00000001832)	ENSMICG00000001846	ENSMICG00000028150	ENSMICG00000042671	GRIA4 (ENSMICG00000003112)	MSANTD4 (ENSMICG00000036595)	KBTBD3 (ENSMICG00000030981)	AASDHPPT (ENSMICG00000032630)	ENSMICG00000036566	ENSMICG00000035020	GUCY1A2 (ENSMICG00000004925)	CWF19L2 (ENSMICG00000010853)	ALKBH8 (ENSMICG00000001044)	ELMOD1 (ENSMICG00000001050)	SLC35F2 (ENSMICG00000000245)	ENSMICG00000038149 #22	RAB39A (ENSMICG00000045554)	CUL5 (ENSMICG00000000376)	ENSMICG00000028194	ACAT1 (ENSMICG00000000380)	NPAT (ENSMICG00000000386)	ATM (ENSMICG00000013655)	ENSMICG00000001104	C11orf65 (ENSMICG00000003461)	POGLUT3 (ENSMICG00000003463)	EXPH5 (ENSMICG00000044911)	DDX10 (ENSMICG00000035071)	ZC3H12C (ENSMICG00000011455)	RDX (ENSMICG00000011469)	FDX1 (ENSMICG00000007112)	ENSMICG00000002989
Mouse lemur	MODERN SPECIES	1	SMC5 (ENSMICG00000028308)	MAMDC2 (ENSMICG00000001043) #8	CFAP95 (ENSMICG00000033544) #9	PTAR1 (ENSMICG00000001040) #10	APBA1 (ENSMICG00000009602) #11	ENTREP1 (ENSMICG00000002917) #12	TJP2 (ENSMICG00000002908) #14	FXN (ENSMICG00000044611) #13	PIP5K1B (ENSMICG00000004323) #15	TMEM252 (ENSMICG00000044472) #16	PGM5 (ENSMICG00000015998) #17	ENSMICG00000036465 #18	ENSMICG00000005330	ENSMICG00000031232	DOCK8 (ENSMICG00000008267) #21	KANK1 (ENSMICG00000010410) #22	DMRT1 (ENSMICG00000010417) #23	DMRT3 (ENSMICG00000044854) #24	DMRT2 (ENSMICG00000010426) #25	SMARCA2 (ENSMICG00000005162) #27	ENSMICG00000005190	VLDLR (ENSMICG00000005182) #29	KCNV2 (ENSMICG00000005193) #30	PUM3 (ENSMICG00000045916) #31	ENSMICG00000029542	RFX3 (ENSMICG00000011871) #35	ENSMICG00000041775 #36	ENSMICG00000031277 #36	SLC1A1 (ENSMICG00000005171)	SPATA6L (ENSMICG00000017688)	CDC37L1 (ENSMICG00000017690)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Tree shrew	MODERN SPECIES	192																KANK1 (ENSTBEG00000001767) #22	DMRT1 (ENSTBEG00000002038) #23	DMRT3 (ENSTBEG00000002058) #24	ENSTBEG00000002166 #25
Glires	ANCESTRAL SPECIES	9	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Lagomorpha	ANCESTRAL SPECIES	77	ENSGT01100000263667	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013
Rabbit	MODERN SPECIES		ENSOCUG00000021364	MAMDC2 (ENSOCUG00000000271) #8	CFAP95 (ENSOCUG00000008788) #9	PTAR1 (ENSOCUG00000012575) #10	ENSOCUG00000013515 #11	ENTREP1 (ENSOCUG00000013503) #12	TJP2 (ENSOCUG00000013019) #14	FXN (ENSOCUG00000015076) #13	PIP5K1B (ENSOCUG00000015811) #15	PABIR1 (ENSOCUG00000002637)	ENSOCUG00000014142 #16	PGM5 (ENSOCUG00000014125) #17	ENSOCUG00000010467 #18	ENSOCUG00000000733 #19	DOCK8 (ENSOCUG00000003208) #21	KANK1 (ENSOCUG00000004753) #22	ENSOCUG00000036685	DMRT3 (ENSOCUG00000004582) #24	ENSOCUG00000027863	DMRT2 (ENSOCUG00000003299) #25	ENSOCUG00000037388	ENSOCUG00000034834	ENSOCUG00000023438	ENSOCUG00000035677	ENSOCUG00000000241	SMARCA2 (ENSOCUG00000006320) #27	ENSOCUG00000022775	VLDLR (ENSOCUG00000002231) #29	KCNV2 (ENSOCUG00000004385) #30	ENSOCUG00000004189 #31	ENSOCUG00000039572
Pika	MODERN SPECIES	352																ENSOPRG00000005395 #22
Rodentia	ANCESTRAL SPECIES	9	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b.d #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b.d #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Long-tailed chinchilla	MODERN SPECIES	141	SMC5 (ENSCLAG00000005780)	MAMDC2 (ENSCLAG00000004597) #8	ENSCLAG00000005394	CFAP95 (ENSCLAG00000007041) #9	PTAR1 (ENSCLAG00000008830) #10	APBA1 (ENSCLAG00000006043) #11	ENTREP1 (ENSCLAG00000007506) #12	TJP2 (ENSCLAG00000012841) #14	FXN (ENSCLAG00000009225) #13	PIP5K1B (ENSCLAG00000011292) #15	TMEM252 (ENSCLAG00000005523) #16	PGM5 (ENSCLAG00000005854) #17	ENSCLAG00000006762 #18	ENSCLAG00000005076 #19	DOCK8 (ENSCLAG00000005204) #21	KANK1 (ENSCLAG00000015509) #22	DMRT1 (ENSCLAG00000015238) #23	DMRT3 (ENSCLAG00000015537) #24	DMRT2 (ENSCLAG00000006168) #25	SMARCA2 (ENSCLAG00000014484) #27	VLDLR (ENSCLAG00000007543) #29	KCNV2 (ENSCLAG00000013226) #30	PUM3 (ENSCLAG00000011892) #31	RFX3 (ENSCLAG00000009044) #35	GLIS3 (ENSCLAG00000008116) #36	ENSCLAG00000009238	SLC1A1 (ENSCLAG00000009832)	ENSCLAG00000009476	SPATA6L (ENSCLAG00000010497)	PLPP6 (ENSCLAG00000017735)	CDC37L1 (ENSCLAG00000005805)
Degu	MODERN SPECIES	128	ENSODEG00000019033	APBA1 (ENSODEG00000004217) #11	ENTREP1 (ENSODEG00000004348) #12	TJP2 (ENSODEG00000004420) #14	FXN (ENSODEG00000003413) #13	PIP5K1B (ENSODEG00000003585) #15	ENSODEG00000003739	PABIR1 (ENSODEG00000019013)	TMEM252 (ENSODEG00000003841) #16	PGM5 (ENSODEG00000003917) #17	ENSODEG00000003983 #19	ENSODEG00000004467 #21	ENSODEG00000004602 #21	ENSODEG00000004711 #21	ENSODEG00000004719	KANK1 (ENSODEG00000004766) #22	DMRT1 (ENSODEG00000004898) #23	DMRT3 (ENSODEG00000004984) #24	DMRT2 (ENSODEG00000004992) #25	SMARCA2 (ENSODEG00000005452) #27	ENSODEG00000006378	ENSODEG00000003492 #29	KCNV2 (ENSODEG00000003536) #30	ENSODEG00000003625 #31	RFX3 (ENSODEG00000003682) #35	GLIS3 (ENSODEG00000003731) #36	SLC1A1 (ENSODEG00000003884)	ENSODEG00000003949	SPATA6L (ENSODEG00000004066)	PLPP6 (ENSODEG00000019026)	CDC37L1 (ENSODEG00000004185)
Guinea pig	MODERN SPECIES	21	KLF9 (ENSCPOG00000031222)	SMC5 (ENSCPOG00000000198)	MAMDC2 (ENSCPOG00000002432) #8	CFAP95 (ENSCPOG00000006639) #9	PTAR1 (ENSCPOG00000008368) #10	APBA1 (ENSCPOG00000032780) #11	ENTREP1 (ENSCPOG00000003236) #12	TJP2 (ENSCPOG00000021062) #14	FXN (ENSCPOG00000004293) #13	PIP5K1B (ENSCPOG00000004288) #15	PABIR1 (ENSCPOG00000003280)	TMEM252 (ENSCPOG00000013771) #16	PGM5 (ENSCPOG00000015031) #17	ENSCPOG00000019718 #19	DOCK8 (ENSCPOG00000008366) #21	KANK1 (ENSCPOG00000008389) #22	DMRT1 (ENSCPOG00000005909) #23	DMRT3 (ENSCPOG00000005912) #24	DMRT2 (ENSCPOG00000008452) #25	SMARCA2 (ENSCPOG00000005475) #27	VLDLR (ENSCPOG00000007685) #29	KCNV2 (ENSCPOG00000032893) #30	ENSCPOG00000008552 #31	RFX3 (ENSCPOG00000000900) #35	GLIS3 (ENSCPOG00000005523) #36	ENSCPOG00000030794	SLC1A1 (ENSCPOG00000011151)	PLPP6 (ENSCPOG00000012931)	SPATA6L (ENSCPOG00000012925)	CDC37L1 (ENSCPOG00000030938)	AK3 (ENSCPOG00000011927)
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000031959	TJP2 (ENSHGLG00000015590) #14	FXN (ENSHGLG00000013859) #13	PIP5K1B (ENSHGLG00000015519) #15	PABIR1 (ENSHGLG00000021429)	ENSHGLG00000045896	ENSHGLG00000040794	TMEM252 (ENSHGLG00000033131) #16	PGM5 (ENSHGLG00000013086) #17	ENSHGLG00000046909 #18	CBWD3 (ENSHGLG00000015962) #19	ENSHGLG00000020779	DOCK8 (ENSHGLG00000016578) #21	ENSHGLG00000050403	ENSHGLG00000045832	KANK1 (ENSHGLG00000012000) #22	DMRT1 (ENSHGLG00000043033) #23	DMRT3 (ENSHGLG00000012858) #24	ENSHGLG00000033430 #25	ENSHGLG00000036415	ENSHGLG00000035319	ENSHGLG00000013697	ENSHGLG00000005215 #27	ENSHGLG00000035043	ENSHGLG00000016566	VLDLR (ENSHGLG00000016113) #29	KCNV2 (ENSHGLG00000015810) #30	ENSHGLG00000015868 #31	ENSHGLG00000016314	ENSHGLG00000042585	ENSHGLG00000019207
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Marmotini	ANCESTRAL SPECIES	1	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Marmotini_b	ANCESTRAL SPECIES	88	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Arctic ground squirrel	MODERN SPECIES	568															ENSUPAG00010016844	KANK1 (ENSUPAG00010016810) #22	DMRT1 (ENSUPAG00010016791) #23	DMRT3 (ENSUPAG00010016785) #24	CYP51A1 (ENSUPAG00010016765)	LRRD1 (ENSUPAG00010016745)	KRIT1 (ENSUPAG00010016644)	ANKIB1 (ENSUPAG00010016604)	ENSUPAG00010016589	GATAD1 (ENSUPAG00010016577)	PEX1 (ENSUPAG00010016509)	RBM48 (ENSUPAG00010016502)	ENSUPAG00010016496
Squirrel	MODERN SPECIES	103	CFAP95 (ENSSTOG00000012360) #9	PTAR1 (ENSSTOG00000012685) #10	APBA1 (ENSSTOG00000012678) #11	ENTREP1 (ENSSTOG00000012667) #12	TJP2 (ENSSTOG00000011181) #14	ENSSTOG00000033140 #13	PIP5K1B (ENSSTOG00000023540) #15	PABIR1 (ENSSTOG00000022211)	TMEM252 (ENSSTOG00000008860) #16	PGM5 (ENSSTOG00000008834) #17	ENSSTOG00000029964 #18	ENSSTOG00000028764 #19	ENSSTOG00000031824	DOCK8 (ENSSTOG00000016411) #21	ENSSTOG00000030036	KANK1 (ENSSTOG00000010218) #22	DMRT1 (ENSSTOG00000010235) #23	DMRT3 (ENSSTOG00000023574) #24	DMRT2 (ENSSTOG00000026909) #25	SMARCA2 (ENSSTOG00000006812) #27	ENSSTOG00000031987	VLDLR (ENSSTOG00000006880) #29	KCNV2 (ENSSTOG00000020003) #30	PUM3 (ENSSTOG00000009586) #31	RFX3 (ENSSTOG00000006974) #35	GLIS3 (ENSSTOG00000000302) #36	ENSSTOG00000031708	SLC1A1 (ENSSTOG00000023583)	PLPP6 (ENSSTOG00000025831)	SPATA6L (ENSSTOG00000000018)	CDC37L1 (ENSSTOG00000000020)
Alpin marmot	MODERN SPECIES	32	PTAR1 (ENSMMMG00000011070) #10	APBA1 (ENSMMMG00000011033) #11	ENSMMMG00000011022 #12	TJP2 (ENSMMMG00000003727) #14	ENSMMMG00000003616	FXN (ENSMMMG00000003605) #13	PIP5K1B (ENSMMMG00000003495) #15	PABIR1 (ENSMMMG00000003490)	TMEM252 (ENSMMMG00000003476) #16	PGM5 (ENSMMMG00000003460) #17	ENSMMMG00000003446 #18	ENSMMMG00000003411 #19	DOCK8 (ENSMMMG00000003328) #21	ENSMMMG00000003304	ENSMMMG00000003301	KANK1 (ENSMMMG00000003281) #22	DMRT1 (ENSMMMG00000003270) #23	DMRT3 (ENSMMMG00000003239) #24	DMRT2 (ENSMMMG00000003238) #25	ENSMMMG00000003212	SMARCA2 (ENSMMMG00000002811) #27	ENSMMMG00000002785	ENSMMMG00000002765	VLDLR (ENSMMMG00000002594) #29	ENSMMMG00000002572	KCNV2 (ENSMMMG00000002550) #30	PUM3 (ENSMMMG00000002513) #31	ENSMMMG00000002504	GLIS3 (ENSMMMG00000002430) #36	ENSMMMG00000002416	ENSMMMG00000002405
Eurasian red squirrel	MODERN SPECIES	6	MAMDC2 (ENSSVLG00005021856) #8	CFAP95 (ENSSVLG00005021956) #9	PTAR1 (ENSSVLG00005022066) #10	APBA1 (ENSSVLG00005022160) #11	ENTREP1 (ENSSVLG00005022461) #12	TJP2 (ENSSVLG00005022528) #14	ENSSVLG00005022798 #13	PIP5K1B (ENSSVLG00005022876) #15	PABIR1 (ENSSVLG00005023031)	TMEM252 (ENSSVLG00005023049) #16	PGM5 (ENSSVLG00005023081) #17	ENSSVLG00005023212 #18	ENSSVLG00005023230 #19	ENSSVLG00005023280	DOCK8 (ENSSVLG00005023344) #21	KANK1 (ENSSVLG00005023807) #22	DMRT1 (ENSSVLG00005023845) #23	DMRT3 (ENSSVLG00005023888) #24	DMRT2 (ENSSVLG00005023918) #25	SMARCA2 (ENSSVLG00005024009) #27	ENSSVLG00005024201	VLDLR (ENSSVLG00005024232) #29	KCNV2 (ENSSVLG00005024318) #30	PUM3 (ENSSVLG00005024338) #31	ENSSVLG00005024401	RFX3 (ENSSVLG00005024420) #35	GLIS3 (ENSSVLG00005024543) #36	SLC1A1 (ENSSVLG00005024569)	SPATA6L (ENSSVLG00005024615)	PLPP6 (ENSSVLG00005024689)	CDC37L1 (ENSSVLG00005024699)
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Kangaroo rat	MODERN SPECIES	359	Trpm3 (ENSDORG00000009972)	Klf9 (ENSDORG00000029268)	Smc5 (ENSDORG00000009689)	Mamdc2 (ENSDORG00000000884) #8	Ptar1 (ENSDORG00000005855) #10	Apba1 (ENSDORG00000003149) #11	Entrep1 (ENSDORG00000001566) #12	Tjp2 (ENSDORG00000009039) #14	Fxn (ENSDORG00000027975) #13	Pip5k1b (ENSDORG00000001153) #15	Fam122a (ENSDORG00000001152)	Tmem252 (ENSDORG00000005477) #16	Pgm5 (ENSDORG00000005476) #17	Cbwd1 (ENSDORG00000004917) #19	Dock8 (ENSDORG00000007203) #21	Kank1 (ENSDORG00000015159) #22	ENSDORG00000006363 #23	Dmrt2 (ENSDORG00000007216) #25	Smarca2 (ENSDORG00000014832) #27	Vldlr (ENSDORG00000012954) #29	Kcnv2 (ENSDORG00000011511) #30	ENSDORG00000003628 #31	Rfx3 (ENSDORG00000013906) #35	ENSDORG00000025494 #36	Slc1a1 (ENSDORG00000010091)	Plpp6 (ENSDORG00000003071)	Cdc37l1 (ENSDORG00000023648)	Ak3 (ENSDORG00000010355)	Rcl1 (ENSDORG00000015645)	Jak2 (ENSDORG00000011552)	ENSDORG00000000109
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Lesser Egyptian jerboa	MODERN SPECIES	50	Mamdc2 (ENSJJAG00000010569) #8	Cfap95 (ENSJJAG00000021419) #9	Ptar1 (ENSJJAG00000017996) #10	Apba1 (ENSJJAG00000021335) #11	Entrep1 (ENSJJAG00000021132) #12	Tjp2 (ENSJJAG00000003581) #14	Fxn (ENSJJAG00000022666) #13	Pip5k1b (ENSJJAG00000018154) #15	Fam122a (ENSJJAG00000009421)	Tmem252 (ENSJJAG00000015659) #16	Pgm5 (ENSJJAG00000022690) #17	ENSJJAG00000013817 #19	ENSJJAG00000009646 #21	ENSJJAG00000017231 #21	ENSJJAG00000015498 #21	Kank1 (ENSJJAG00000018774) #22	Dmrt1 (ENSJJAG00000016690) #23	Dmrt3 (ENSJJAG00000022573) #24	Dmrt2 (ENSJJAG00000023959) #25	ENSJJAG00000010719	Smarca2 (ENSJJAG00000010867) #27	Vldlr (ENSJJAG00000016440) #29	ENSJJAG00000000409	Kcnv2 (ENSJJAG00000016782) #30	Pum3 (ENSJJAG00000012563) #31	ENSJJAG00000010263	Rfx3 (ENSJJAG00000010280) #35	ENSJJAG00000024335	Glis3 (ENSJJAG00000011399) #36	Slc1a1 (ENSJJAG00000018507)	ENSJJAG00000020462
Muroidea	ANCESTRAL SPECIES	1	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Muroidea_A	ANCESTRAL SPECIES		ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Chinese hamster chok1gshd	MODERN SPECIES	401	Mamdc2 (ENSCGRG00001023333) #8	Cfap95 (ENSCGRG00001000720) #9	Ptar1 (ENSCGRG00001004346) #10	Apba1 (ENSCGRG00001017033) #11	Entrep1 (ENSCGRG00001002309) #12	Tjp2 (ENSCGRG00001022408) #14	Fxn (ENSCGRG00001003906) #13	ENSCGRG00001013409	Pip5k1b (ENSCGRG00001017408) #15	Fam122a (ENSCGRG00001012685)	Tmem252 (ENSCGRG00001019081) #16	Pgm5 (ENSCGRG00001020037) #17	Foxd4 (ENSCGRG00001006276) #18	Cbwd1 (ENSCGRG00001020851) #19	Dock8 (ENSCGRG00001013079) #21	Kank1 (ENSCGRG00001020355) #22	Dmrt1 (ENSCGRG00001000625) #23	Dmrt3 (ENSCGRG00001005036) #24	Dmrt2 (ENSCGRG00001007562) #25	Smarca2 (ENSCGRG00001002323) #27	Vldlr (ENSCGRG00001014399) #29	ENSCGRG00001017895	Kcnv2 (ENSCGRG00001018140) #30	Pum3 (ENSCGRG00001016402) #31	Rfx3 (ENSCGRG00001021745) #35	Glis3 (ENSCGRG00001014233) #36	Slc1a1 (ENSCGRG00001022336)	ENSCGRG00001023585	Spata6l (ENSCGRG00001002881)	Plpp6 (ENSCGRG00001012981)	Cdc37l1 (ENSCGRG00001000264)
Golden Hamster	MODERN SPECIES	617	Smc5 (ENSMAUG00000010150)	Mamdc2 (ENSMAUG00000011315) #8	Cfap95 (ENSMAUG00000009592) #9	Ptar1 (ENSMAUG00000008946) #10	Apba1 (ENSMAUG00000009290) #11	Entrep1 (ENSMAUG00000010196) #12	Tjp2 (ENSMAUG00000008987) #14	Fxn (ENSMAUG00000009158) #13	Pip5k1b (ENSMAUG00000010912) #15	Fam122a (ENSMAUG00000002386)	Tmem252 (ENSMAUG00000008962) #16	Pgm5 (ENSMAUG00000009185) #17	Cbwd1 (ENSMAUG00000009107) #19	ENSMAUG00000009538 #21	ENSMAUG00000009191 #21	Kank1 (ENSMAUG00000009263) #22	ENSMAUG00000008975 #23	Dmrt3 (ENSMAUG00000008904) #24	Dmrt2 (ENSMAUG00000010038) #25	ENSMAUG00000010070 #27	ENSMAUG00000008807 #27	ENSMAUG00000008613 #27	ENSMAUG00000008768	Kcnv2 (ENSMAUG00000008727) #30	Pum3 (ENSMAUG00000009733) #31	Rfx3 (ENSMAUG00000009987) #35	Slc1a1 (ENSMAUG00000009046)	Plpp6 (ENSMAUG00000001915)	Spata6l (ENSMAUG00000010530)	Cdc37l1 (ENSMAUG00000008847)	Ak3 (ENSMAUG00000008253)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000160905	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Prairie vole	MODERN SPECIES	16	Smc5 (ENSMOCG00000013931)	Mamdc2 (ENSMOCG00000010608) #8	Cfap95 (ENSMOCG00000018700) #9	Ptar1 (ENSMOCG00000021324) #10	Apba1 (ENSMOCG00000009892) #11	Entrep1 (ENSMOCG00000018310) #12	Tjp2 (ENSMOCG00000012468) #14	Fxn (ENSMOCG00000014625) #13	Pip5k1b (ENSMOCG00000017594) #15	ENSMOCG00000010285	Fam122a (ENSMOCG00000001051)	Tmem252 (ENSMOCG00000017938) #16	Pgm5 (ENSMOCG00000011710) #17	Cbwd1 (ENSMOCG00000015974) #19	Dock8 (ENSMOCG00000014249) #21	Kank1 (ENSMOCG00000020725) #22	ENSMOCG00000017971 #23	Dmrt3 (ENSMOCG00000015270) #24	Dmrt2 (ENSMOCG00000016701) #25	Smarca2 (ENSMOCG00000001611) #27	Vldlr (ENSMOCG00000004269) #29	Kcnv2 (ENSMOCG00000014872) #30	ENSMOCG00000019519 #31	Rfx3 (ENSMOCG00000018931) #35	Glis3 (ENSMOCG00000009953) #36	Slc1a1 (ENSMOCG00000017507)	ENSMOCG00000018225	Spata6l (ENSMOCG00000022082)	Plpp6 (ENSMOCG00000001135)	Cdc37l1 (ENSMOCG00000018341)	Ak3 (ENSMOCG00000010856)
Northern American deer mouse	MODERN SPECIES		Smc5 (ENSPEMG00000010351)	ENSPEMG00000011160	ENSPEMG00000021172 #8	Cfap95 (ENSPEMG00000021140) #9	Ptar1 (ENSPEMG00000018036) #10	Apba1 (ENSPEMG00000010980) #11	Entrep1 (ENSPEMG00000020060) #12	Tjp2 (ENSPEMG00000020250) #14	ENSPEMG00000019884 #13	Pip5k1b (ENSPEMG00000020095) #15	Fam122a (ENSPEMG00000012823)	Tmem252 (ENSPEMG00000007137) #16	Pgm5 (ENSPEMG00000020205) #17	Cbwd1 (ENSPEMG00000000396) #19	Dock8 (ENSPEMG00000014001) #21	Kank1 (ENSPEMG00000013916) #22	Dmrt1 (ENSPEMG00000019943) #23	Dmrt3 (ENSPEMG00000019990) #24	Dmrt2 (ENSPEMG00000019767) #25	Smarca2 (ENSPEMG00000019821) #27	ENSPEMG00000021666	Vldlr (ENSPEMG00000022250) #29	Kcnv2 (ENSPEMG00000020138) #30	ENSPEMG00000030423	ENSPEMG00000019340 #31	Rfx3 (ENSPEMG00000019731) #35	Glis3 (ENSPEMG00000020002) #36	ENSPEMG00000004286	Slc1a1 (ENSPEMG00000009611)	ENSPEMG00000021571	Spata6l (ENSPEMG00000023122)
Murinae	ANCESTRAL SPECIES		ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Mus	ANCESTRAL SPECIES		ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00900000143396	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00860000136305	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00900000143396	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00860000136305	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00900000143396	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00860000136305	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489.n #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00900000143396	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00530000063821.b.b	ENSGT00940000160907
Steppe mouse	MODERN SPECIES	3345	Cfap95 (ENSMSIG00000011339) #9	Ptar1 (ENSMSIG00000011314) #10	Apba1 (ENSMSIG00000011254) #11	ENSMSIG00000011248	Entrep1 (ENSMSIG00000011206) #12	Tjp2 (ENSMSIG00000010954) #14	Fxn (ENSMSIG00000010910) #13	ENSMSIG00000010906	Pip5k1b (ENSMSIG00000010797) #15	Fam122a (ENSMSIG00000010786)	Tmem252 (ENSMSIG00000010774) #16	Pgm5 (ENSMSIG00000010743) #17	Foxd4 (ENSMSIG00000010736) #18	Cbwd1 (ENSMSIG00000010701) #19	Dock8 (ENSMSIG00000010534) #21	Kank1 (ENSMSIG00000010404) #22	Dmrt1 (ENSMSIG00000010363) #23	Dmrt3 (ENSMSIG00000010354) #24	Dmrt2 (ENSMSIG00000010341) #25
spretus	MODERN SPECIES	10	Mamdc2 (MGP_SPRETEiJ_G0023741) #8	Cfap95 (MGP_SPRETEiJ_G0023742) #9	Ptar1 (MGP_SPRETEiJ_G0023743) #10	MGP_SPRETEiJ_G0023744	Apba1 (MGP_SPRETEiJ_G0023745) #11	Entrep1 (MGP_SPRETEiJ_G0023746) #12	Tjp2 (MGP_SPRETEiJ_G0023747) #14	Fxn (MGP_SPRETEiJ_G0023748) #13	Pip5k1b (MGP_SPRETEiJ_G0023749) #15	Fam122a (MGP_SPRETEiJ_G0023750)	Tmem252 (MGP_SPRETEiJ_G0023751) #16	Pgm5 (MGP_SPRETEiJ_G0023752) #17	Foxd4 (MGP_SPRETEiJ_G0023753) #18	Cbwd1 (MGP_SPRETEiJ_G0023754) #19	Dock8 (MGP_SPRETEiJ_G0023755) #21	Kank1 (MGP_SPRETEiJ_G0023756) #22	Dmrt3 (MGP_SPRETEiJ_G0023757) #24	Dmrt2 (MGP_SPRETEiJ_G0023758) #25	Smarca2 (MGP_SPRETEiJ_G0023759) #27	MGP_SPRETEiJ_G0023760	Vldlr (MGP_SPRETEiJ_G0023761) #29	Kcnv2 (MGP_SPRETEiJ_G0023762) #30	Pum3 (MGP_SPRETEiJ_G0023763) #31	Rfx3 (MGP_SPRETEiJ_G0023764) #35	Glis3 (MGP_SPRETEiJ_G0023765) #36	Slc1a1 (MGP_SPRETEiJ_G0023766)	Spata6l (MGP_SPRETEiJ_G0023767)	Plpp6 (MGP_SPRETEiJ_G0023768)	Cdc37l1 (MGP_SPRETEiJ_G0023769)	Ak3 (MGP_SPRETEiJ_G0023770)	Rcl1 (MGP_SPRETEiJ_G0023771)
Mouse	MODERN SPECIES	10	Mamdc2 (ENSMUSG00000033207) #8	Cfap95 (ENSMUSG00000033053) #9	Ptar1 (ENSMUSG00000074925) #10	Apba1 (ENSMUSG00000024897) #11	Entrep1 (ENSMUSG00000071604) #12	Tjp2 (ENSMUSG00000024812) #14	Fxn (ENSMUSG00000059363) #13	Pip5k1b (ENSMUSG00000024867) #15	Fam122a (ENSMUSG00000074922)	Tmem252 (ENSMUSG00000048572) #16	Pgm5 (ENSMUSG00000041731) #17	Gm10053 (ENSMUSG00000058927)	Foxd4 (ENSMUSG00000051490) #18	Cbwd1 (ENSMUSG00000024878) #19	Dock8 (ENSMUSG00000052085) #21	Kank1 (ENSMUSG00000032702) #22	Dmrt1 (ENSMUSG00000024837) #23	Dmrt3 (ENSMUSG00000042372) #24	Dmrt2 (ENSMUSG00000048138) #25	Smarca2 (ENSMUSG00000024921) #27	Gm815 (ENSMUSG00000074913)	Vldlr (ENSMUSG00000024924) #29	Kcnv2 (ENSMUSG00000047298) #30	Pum3 (ENSMUSG00000041360) #31	Rfx3 (ENSMUSG00000040929) #35	Glis3 (ENSMUSG00000052942) #36	Slc1a1 (ENSMUSG00000024935)	Spata6l (ENSMUSG00000064202)	Plpp6 (ENSMUSG00000040105)	Cdc37l1 (ENSMUSG00000024780)	Ak3 (ENSMUSG00000024782)
Ryukyu mouse	MODERN SPECIES	10	Mamdc2 (MGP_CAROLIEiJ_G0022822) #8	Cfap95 (MGP_CAROLIEiJ_G0022823) #9	Ptar1 (MGP_CAROLIEiJ_G0022824) #10	MGP_CAROLIEiJ_G0022825	Apba1 (MGP_CAROLIEiJ_G0022826) #11	Entrep1 (MGP_CAROLIEiJ_G0022827) #12	Tjp2 (MGP_CAROLIEiJ_G0022828) #14	Fxn (MGP_CAROLIEiJ_G0022829) #13	Pip5k1b (MGP_CAROLIEiJ_G0022830) #15	Fam122a (MGP_CAROLIEiJ_G0022831)	Tmem252 (MGP_CAROLIEiJ_G0022832) #16	Pgm5 (MGP_CAROLIEiJ_G0022833) #17	Foxd4 (MGP_CAROLIEiJ_G0022834) #18	Cbwd1 (MGP_CAROLIEiJ_G0022835) #19	Dock8 (MGP_CAROLIEiJ_G0022836) #21	Kank1 (MGP_CAROLIEiJ_G0022837) #22	Dmrt1 (MGP_CAROLIEiJ_G0022838) #23	Dmrt3 (MGP_CAROLIEiJ_G0022839) #24	Dmrt2 (MGP_CAROLIEiJ_G0022840) #25	Smarca2 (MGP_CAROLIEiJ_G0022841) #27	MGP_CAROLIEiJ_G0022842	Vldlr (MGP_CAROLIEiJ_G0022843) #29	Kcnv2 (MGP_CAROLIEiJ_G0022844) #30	Pum3 (MGP_CAROLIEiJ_G0022845) #31	Rfx3 (MGP_CAROLIEiJ_G0022846) #35	Glis3 (MGP_CAROLIEiJ_G0022847) #36	Slc1a1 (MGP_CAROLIEiJ_G0022848)	Spata6l (MGP_CAROLIEiJ_G0022849)	Plpp6 (MGP_CAROLIEiJ_G0022850)	Cdc37l1 (MGP_CAROLIEiJ_G0022851)	Ak3 (MGP_CAROLIEiJ_G0022852)
Shrew mouse	MODERN SPECIES		Klf9 (MGP_PahariEiJ_G0014314)	Smc5 (MGP_PahariEiJ_G0014315)	Mamdc2 (MGP_PahariEiJ_G0014316) #8	Cfap95 (MGP_PahariEiJ_G0014317) #9	Ptar1 (MGP_PahariEiJ_G0014318) #10	Apba1 (MGP_PahariEiJ_G0014319) #11	Entrep1 (MGP_PahariEiJ_G0014320) #12	Tjp2 (MGP_PahariEiJ_G0014321) #14	MGP_PahariEiJ_G0014322 #13	Fam122a (MGP_PahariEiJ_G0014324)	Tmem252 (MGP_PahariEiJ_G0014325) #16	Pgm5 (MGP_PahariEiJ_G0014326) #17	Foxd4 (MGP_PahariEiJ_G0014327) #18	Cbwd1 (MGP_PahariEiJ_G0014328) #19	Dock8 (MGP_PahariEiJ_G0014329) #21	Kank1 (MGP_PahariEiJ_G0014330) #22	Dmrt1 (MGP_PahariEiJ_G0014331) #23	Dmrt3 (MGP_PahariEiJ_G0014332) #24	Dmrt2 (MGP_PahariEiJ_G0014333) #25	Smarca2 (MGP_PahariEiJ_G0014334) #27	MGP_PahariEiJ_G0014335	Vldlr (MGP_PahariEiJ_G0014336) #29	Kcnv2 (MGP_PahariEiJ_G0014337) #30	Pum3 (MGP_PahariEiJ_G0014338) #31	Rfx3 (MGP_PahariEiJ_G0014339) #35	Glis3 (MGP_PahariEiJ_G0014340) #36	Slc1a1 (MGP_PahariEiJ_G0014341)	Spata6l (MGP_PahariEiJ_G0014342)	Plpp6 (MGP_PahariEiJ_G0014343)	Cdc37l1 (MGP_PahariEiJ_G0014344)	Ak3 (MGP_PahariEiJ_G0014345)
Rat	MODERN SPECIES		Mamdc2 (ENSRNOG00000024620) #8	Cfap95 (ENSRNOG00000036615) #9	Ptar1 (ENSRNOG00000014891) #10	Apba1 (ENSRNOG00000014928) #11	Entrep1 (ENSRNOG00000061147) #12	Tjp2 (ENSRNOG00000015030) #14	Fxn (ENSRNOG00000015213) #13	Pip5k1b (ENSRNOG00000015232) #15	Pabir1 (ENSRNOG00000051051)	Tmem252 (ENSRNOG00000025476) #16	Pgm5 (ENSRNOG00000015406) #17	Foxd4 (ENSRNOG00000050486) #18	Zng1a (ENSRNOG00000015516) #19	Dock8 (ENSRNOG00000015894) #21	Hmgb1-ps4 (ENSRNOG00000065098)	Kank1 (ENSRNOG00000016023) #22	Dmrt1 (ENSRNOG00000016075) #23	Dmrt3 (ENSRNOG00000016284) #24	Dmrt2 (ENSRNOG00000016301) #25	ENSRNOG00000062555	Smarca2 (ENSRNOG00000011931) #27	ENSRNOG00000069446	Vldlr (ENSRNOG00000027491) #29	ENSRNOG00000062591	Kcnv2 (ENSRNOG00000012566) #30	Pum3 (ENSRNOG00000012574) #31	Rfx3 (ENSRNOG00000014486) #35	ENSRNOG00000066761	Glis3 (ENSRNOG00000014768) #36	Slc1a1 (ENSRNOG00000014816)	ENSRNOG00000065811
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1026																ENSNGAG00000019946 #22	ENSNGAG00000009667
Upper Galilee mountains blind mole rat	MODERN SPECIES	994															ENSNGAG00000016775	ENSNGAG00000001837 #22	ENSNGAG00000005862	ENSNGAG00000012874	ENSNGAG00000014855	ENSNGAG00000000860	Rorb (ENSNGAG00000007086)	Trpm6 (ENSNGAG00000005371)	D030056L22Rik (ENSNGAG00000015165)	Carnmt1 (ENSNGAG00000013885)	Nmrk1 (ENSNGAG00000019838)	Ostf1 (ENSNGAG00000020920)
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Suina	ANCESTRAL SPECIES	23	ENSGT01100000263667	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Chacoan peccary	MODERN SPECIES	20	MAMDC2 (ENSCWAG00000018276) #8	CFAP95 (ENSCWAG00000018298) #9	PTAR1 (ENSCWAG00000018370) #10	APBA1 (ENSCWAG00000018421) #11	ENTREP1 (ENSCWAG00000018486) #12	TJP2 (ENSCWAG00000018633) #14	ENSCWAG00000019132	FXN (ENSCWAG00000019158) #13	PIP5K1B (ENSCWAG00000019197) #15	PABIR1 (ENSCWAG00000019304)	TMEM252 (ENSCWAG00000019312) #16	PGM5 (ENSCWAG00000019336) #17	ENSCWAG00000019440 #18	ENSCWAG00000019496 #19	DOCK8 (ENSCWAG00000019884) #21	KANK1 (ENSCWAG00000020332) #22	DMRT1 (ENSCWAG00000020382) #23	DMRT3 (ENSCWAG00000020400) #24	DMRT2 (ENSCWAG00000020422) #25	ENSCWAG00000020471	SMARCA2 (ENSCWAG00000020512) #27	VLDLR (ENSCWAG00000020653) #29	ENSCWAG00000020684	KCNV2 (ENSCWAG00000020693) #30	PUM3 (ENSCWAG00000020700) #31	RFX3 (ENSCWAG00000020726) #35	ENSCWAG00000020759	GLIS3 (ENSCWAG00000020767) #36	SLC1A1 (ENSCWAG00000020776)	SPATA6L (ENSCWAG00000020801)	PLPP6 (ENSCWAG00000020823)
Pig	MODERN SPECIES		ENSSSCG00000005255	MAMDC2 (ENSSSCG00000030655) #8	CFAP95 (ENSSSCG00000035668) #9	PTAR1 (ENSSSCG00000005252) #10	APBA1 (ENSSSCG00000005250) #11	ENTREP1 (ENSSSCG00000005249) #12	TJP2 (ENSSSCG00000005247) #14	ENSSSCG00000032999 #13	PIP5K1B (ENSSSCG00000027161) #15	PABIR1 (ENSSSCG00000057474)	TMEM252 (ENSSSCG00000037125) #16	PGM5 (ENSSSCG00000005243) #17	ENSSSCG00000041279 #18	ENSSSCG00000005241 #19	DOCK8 (ENSSSCG00000005240) #21	KANK1 (ENSSSCG00000005235) #22	DMRT1 (ENSSSCG00000005236) #23	DMRT3 (ENSSSCG00000040481) #24	DMRT2 (ENSSSCG00000005233) #25	ENSSSCG00000046403	ENSSSCG00000044946	ENSSSCG00000032324	ENSSSCG00000057314 #27	ENSSSCG00000005232 #27	ENSSSCG00000041522	ENSSSCG00000052990	ENSSSCG00000040670	VLDLR (ENSSSCG00000005229) #29	KCNV2 (ENSSSCG00000005228) #30	PUM3 (ENSSSCG00000005227) #31	ENSSSCG00000039823
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Cetacea	ANCESTRAL SPECIES	9	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00990000210075	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00940000164995	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.f #13	ENSGT00990000210075	ENSGT00390000005811.e.a #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000165777.a.a	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.f #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000165777.a.a	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT01100000263674 #7	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.f.b #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000165777.a.a	ENSGT01050000244891.A.c.a.a	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00990000210075	ENSGT00940000158634 #14	ENSGT00390000005811.f.b #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000165777.a.a	ENSGT01050000244891.A.c.a.a	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Narwhal	MODERN SPECIES	312	MAMDC2 (ENSMMNG00015013893) #8	CFAP95 (ENSMMNG00015013867) #9	PTAR1 (ENSMMNG00015013843) #10	APBA1 (ENSMMNG00015013818) #11	ENTREP1 (ENSMMNG00015013797) #12	ENSMMNG00015013780	TJP2 (ENSMMNG00015013657) #14	FXN (ENSMMNG00015013572) #13	PIP5K1B (ENSMMNG00015013540) #15	PABIR1 (ENSMMNG00015013514)	TMEM252 (ENSMMNG00015013503) #16	PGM5 (ENSMMNG00015013485) #17	ENSMMNG00015013464 #18	ENSMMNG00015013419 #19	DOCK8 (ENSMMNG00015013245) #21	KANK1 (ENSMMNG00015013138) #22	DMRT1 (ENSMMNG00015013112) #23	DMRT3 (ENSMMNG00015013099) #24	DMRT2 (ENSMMNG00015013077) #25	ENSMMNG00015021427	ENSMMNG00015021422	SMARCA2 (ENSMMNG00015021345) #27	VLDLR (ENSMMNG00015021252) #29	KCNV2 (ENSMMNG00015021226) #30	PUM3 (ENSMMNG00015021202) #31	ENSMMNG00015021179	RFX3 (ENSMMNG00015021042) #35	GLIS3 (ENSMMNG00015021011) #36	SLC1A1 (ENSMMNG00015020990)	PLPP6 (ENSMMNG00015020983)	SPATA6L (ENSMMNG00015020944)
Beluga whale	MODERN SPECIES	50	MAMDC2 (ENSDLEG00000009814) #8	CUNH9orf135 (ENSDLEG00000009843) #9	PTAR1 (ENSDLEG00000009863) #10	APBA1 (ENSDLEG00000009910) #11	ENTREP1 (ENSDLEG00000010006) #12	ENSDLEG00000010351	ENSDLEG00000011517	FXN (ENSDLEG00000011543) #13	PIP5K1B (ENSDLEG00000011558) #15	PABIR1 (ENSDLEG00000011588)	TMEM252 (ENSDLEG00000011598) #16	PGM5 (ENSDLEG00000011615) #17	ENSDLEG00000011631 #18	ENSDLEG00000011652 #19	DOCK8 (ENSDLEG00000012329) #21	KANK1 (ENSDLEG00000019090) #22	DMRT1 (ENSDLEG00000019261) #23	DMRT3 (ENSDLEG00000019280) #24	ENSDLEG00000019284 ##25	DMRT2 (ENSDLEG00000019289) #25	ENSDLEG00000019303	ENSDLEG00000019309	SMARCA2 (ENSDLEG00000019318) #27	VLDLR (ENSDLEG00000019340) #29	KCNV2 (ENSDLEG00000019382) #30	PUM3 (ENSDLEG00000019389) #31	RFX3 (ENSDLEG00000019460) #35	ENSDLEG00000019514 #36	ENSDLEG00000019522	SLC1A1 (ENSDLEG00000019531)	ENSDLEG00000019547
Vaquita	MODERN SPECIES	17	CFAP95 (ENSPSNG00000013463) #9	PTAR1 (ENSPSNG00000013672) #10	APBA1 (ENSPSNG00000013831) #11	ENTREP1 (ENSPSNG00000014040) #12	TJP2 (ENSPSNG00000014370) #14	ENSPSNG00000015578	ENSPSNG00000015625 #13	ENSPSNG00000015658	PIP5K1B (ENSPSNG00000015709) #15	PABIR1 (ENSPSNG00000016069)	TMEM252 (ENSPSNG00000016104) #16	PGM5 (ENSPSNG00000016170) #17	ENSPSNG00000016403 #18	ENSPSNG00000016463 #19	DOCK8 (ENSPSNG00000016745) #21	KANK1 (ENSPSNG00000018178) #22	DMRT1 (ENSPSNG00000018301) #23	DMRT3 (ENSPSNG00000018387) #24	DMRT2 (ENSPSNG00000018429) #25	ENSPSNG00000018606	ENSPSNG00000018632	SMARCA2 (ENSPSNG00000018802) #27	VLDLR (ENSPSNG00000019297) #29	KCNV2 (ENSPSNG00000019443) #30	PUM3 (ENSPSNG00000019496) #31	RFX3 (ENSPSNG00000019643) #35	GLIS3 (ENSPSNG00000019903) #36	SLC1A1 (ENSPSNG00000019992)	SPATA6L (ENSPSNG00000020084)	PLPP6 (ENSPSNG00000020203)	CDC37L1 (ENSPSNG00000020228)
Dolphin	MODERN SPECIES	3323															DOCK8 (ENSTTRG00000014161) #21	KANK1 (ENSTTRG00000014170) #22	DMRT1 (ENSTTRG00000014171) #23	DMRT3 (ENSTTRG00000014172) #24
Sperm whale	MODERN SPECIES	20	MAMDC2 (ENSPCTG00005003566) #8	CFAP95 (ENSPCTG00005003586) #9	PTAR1 (ENSPCTG00005003621) #10	APBA1 (ENSPCTG00005003656) #11	FAM189A2 (ENSPCTG00005003682) #12	TJP2 (ENSPCTG00005003735) #14	ENSPCTG00005003835	FXN (ENSPCTG00005003847) #13	PIP5K1B (ENSPCTG00005003865) #15	FAM122A (ENSPCTG00005003904)	TMEM252 (ENSPCTG00005003909) #16	PGM5 (ENSPCTG00005003918) #17	ENSPCTG00005003942 #18	ENSPCTG00005004008 #19	DOCK8 (ENSPCTG00005004178) #21	KANK1 (ENSPCTG00005004438) #22	DMRT1 (ENSPCTG00005004498) #23	DMRT3 (ENSPCTG00005004535) #24	DMRT2 (ENSPCTG00005004572) #25	ENSPCTG00005004671	ENSPCTG00005004691	ENSPCTG00005004736 #27	VLDLR (ENSPCTG00005004995) #29	KCNV2 (ENSPCTG00005005193) #30	PUM3 (ENSPCTG00005005228) #31	ENSPCTG00005005299	RFX3 (ENSPCTG00005005359) #35	GLIS3 (ENSPCTG00005005407) #36	SLC1A1 (ENSPCTG00005005440)	SPATA6L (ENSPCTG00005005489)	PLPP6 (ENSPCTG00005005512)
Blue whale	MODERN SPECIES	17	CFAP95 (ENSBMSG00010001190) #9	PTAR1 (ENSBMSG00010001151) #10	APBA1 (ENSBMSG00010001122) #11	ENTREP1 (ENSBMSG00010001047) #12	ENSBMSG00010001005	TJP2 (ENSBMSG00010000778) #14	FXN (ENSBMSG00010000687) #13	PIP5K1B (ENSBMSG00010000638) #15	ENSBMSG00010000615	TMEM252 (ENSBMSG00010000603) #16	PGM5 (ENSBMSG00010000557) #17	ENSBMSG00010000512 #18	ENSBMSG00010000431	DOCK8 (ENSBMSG00010000177) #21	ENSBMSG00010000100	KANK1 (ENSBMSG00010000089) #22	DMRT1 (ENSBMSG00010004442) #23	DMRT3 (ENSBMSG00010004420) #24	DMRT2 (ENSBMSG00010004396) #25	SMARCA2 (ENSBMSG00010004262) #27	VLDLR (ENSBMSG00010004233) #29	KCNV2 (ENSBMSG00010004219) #30	PUM3 (ENSBMSG00010004204) #31	RFX3 (ENSBMSG00010004165) #35	GLIS3 (ENSBMSG00010004124) #36	SLC1A1 (ENSBMSG00010004095)	PLPP6 (ENSBMSG00010004080)	SPATA6L (ENSBMSG00010004050)	CDC37L1 (ENSBMSG00010004036)	AK3 (ENSBMSG00010004013)	RCL1 (ENSBMSG00010003993)
Pecora	ANCESTRAL SPECIES	30	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b
Percora_a	ANCESTRAL SPECIES	24	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Bovidae	ANCESTRAL SPECIES	14	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Caprinae	ANCESTRAL SPECIES	14	ENSGT01100000263674 #7	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00660000097148	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d
Goat	MODERN SPECIES	27	KLF9 (ENSCHIG00000008018)	ENSCHIG00000017511 #7	MAMDC2 (ENSCHIG00000015154) #8	CFAP95 (ENSCHIG00000022040) #9	PTAR1 (ENSCHIG00000007358) #10	APBA1 (ENSCHIG00000016850) #11	ENSCHIG00000022109 #12	TJP2 (ENSCHIG00000009916) #14	FXN (ENSCHIG00000019169) #13	PIP5K1B (ENSCHIG00000015013) #15	TMEM252 (ENSCHIG00000021046) #16	PGM5 (ENSCHIG00000006743) #17	ENSCHIG00000006716 #18	ENSCHIG00000024887 #19	DOCK8 (ENSCHIG00000014695) #21	KANK1 (ENSCHIG00000018134) #22	DMRT1 (ENSCHIG00000024212) #23	DMRT3 (ENSCHIG00000013041) #24	DMRT2 (ENSCHIG00000020138) #25	SMARCA2 (ENSCHIG00000025863) #27	ENSCHIG00000012185	VLDLR (ENSCHIG00000021572) #29	KCNV2 (ENSCHIG00000011625) #30	PUM3 (ENSCHIG00000021559) #31	RFX3 (ENSCHIG00000011556) #35	ENSCHIG00000019534 #36	ENSCHIG00000007959	SLC1A1 (ENSCHIG00000018337)	PLPP6 (ENSCHIG00000001745)	SPATA6L (ENSCHIG00000020946)	ENSCHIG00000010369
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020018830 #7	MAMDC2 (ENSOARG00020019142) #8	CFAP95 (ENSOARG00020019250) #9	PTAR1 (ENSOARG00020019372) #10	APBA1 (ENSOARG00020019533) #11	ENTREP1 (ENSOARG00020019624) #12	ENSOARG00020019784	TJP2 (ENSOARG00020019889) #14	PIP5K1B (ENSOARG00020021769) #15	ENSOARG00020022107	FAM122A (ENSOARG00020022127)	TMEM252 (ENSOARG00020022146) #16	PGM5 (ENSOARG00020022177) #17	ENSOARG00020022393 #19	DOCK8 (ENSOARG00020022900) #21	KANK1 (ENSOARG00020024004) #22	DMRT1 (ENSOARG00020024107) #23	DMRT3 (ENSOARG00020024138) #24	DMRT2 (ENSOARG00020024148) #25	SMARCA2 (ENSOARG00020024243) #27	VLDLR (ENSOARG00020024482) #29	ENSOARG00020024556	KCNV2 (ENSOARG00020006537) #30	PUM3 (ENSOARG00020006587) #31	ENSOARG00020006681	RFX3 (ENSOARG00020006756) #35	GLIS3 (ENSOARG00020007233) #36	SLC1A1 (ENSOARG00020007364)	PLPP6 (ENSOARG00020007422)	ENSOARG00020007455	CDC37L1 (ENSOARG00020007479)
Bovinae	ANCESTRAL SPECIES	14	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Bos	ANCESTRAL SPECIES	10	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Bos_b	ANCESTRAL SPECIES	3	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005015663	MAMDC2 (ENSBIXG00005015686) #8	CFAP95 (ENSBIXG00005015744) #9	PTAR1 (ENSBIXG00005015792) #10	APBA1 (ENSBIXG00005000159) #11	ENTREP1 (ENSBIXG00005015945) #12	TJP2 (ENSBIXG00005016444) #14	FXN (ENSBIXG00005016495) #13	PIP5K1B (ENSBIXG00005002661) #15	TMEM252 (ENSBIXG00005002669) #16	ENSBIXG00005002670	PGM5 (ENSBIXG00005016605) #17	ENSBIXG00005016626 #18	ENSBIXG00005017167 #19	DOCK8 (ENSBIXG00005002913) #21	KANK1 (ENSBIXG00005018119) #22	DMRT1 (ENSBIXG00005018189) #23	DMRT3 (ENSBIXG00005018199) #24	DMRT2 (ENSBIXG00005018266) #25	SMARCA2 (ENSBIXG00005018551) #27	ENSBIXG00005005990	VLDLR (ENSBIXG00005003037) #29	KCNV2 (ENSBIXG00005018778) #30	PUM3 (ENSBIXG00005018805) #31	ENSBIXG00005018899	RFX3 (ENSBIXG00005003091) #35	GLIS3 (ENSBIXG00005002642) #36	ENSBIXG00005019106	SLC1A1 (ENSBIXG00005019133)	PLPP6 (ENSBIXG00005019138)	ENSBIXG00005019159
Cow	MODERN SPECIES	27	MAMDC2 (ENSBTAG00000017369) #8	CFAP95 (ENSBTAG00000033396) #9	PTAR1 (ENSBTAG00000005826) #10	APBA1 (ENSBTAG00000008877) #11	ENTREP1 (ENSBTAG00000011173) #12	TJP2 (ENSBTAG00000011770) #14	FXN (ENSBTAG00000001306) #13	PIP5K1B (ENSBTAG00000009917) #15	TMEM252 (ENSBTAG00000011874) #16	ENSBTAG00000049235	PGM5 (ENSBTAG00000033190) #17	ENSBTAG00000033122 #18	ENSBTAG00000000269 #19	ENSBTAG00000049728	DOCK8 (ENSBTAG00000002190) #21	KANK1 (ENSBTAG00000010976) #22	DMRT1 (ENSBTAG00000033352) #23	DMRT3 (ENSBTAG00000017800) #24	DMRT2 (ENSBTAG00000008062) #25	SMARCA2 (ENSBTAG00000007494) #27	ENSBTAG00000051041	ENSBTAG00000048500	VLDLR (ENSBTAG00000018517) #29	KCNV2 (ENSBTAG00000017884) #30	PUM3 (ENSBTAG00000013357) #31	RFX3 (ENSBTAG00000000819) #35	ENSBTAG00000014467	ENSBTAG00000052736	SLC1A1 (ENSBTAG00000019125)	PLPP6 (ENSBTAG00000011050)	ENSBTAG00000046486
Bos_a	ANCESTRAL SPECIES	30	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00940000158126 #17	ENSGT00390000009110.fb	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00910000144347.a.a	ENSGT00390000013443.d
Domestic yak	MODERN SPECIES	26	CFAP95 (ENSBGRG00000000656) #9	PTAR1 (ENSBGRG00000000713) #10	APBA1 (ENSBGRG00000000786) #11	ENTREP1 (ENSBGRG00000000954) #12	TJP2 (ENSBGRG00000001216) #14	ENSBGRG00000002457 #13	PIP5K1B (ENSBGRG00000002519) #15	TMEM252 (ENSBGRG00000002724) #16	PGM5 (ENSBGRG00000002775) #17	ENSBGRG00000002858	ENSBGRG00000002865	ENSBGRG00000002878 #18	ENSBGRG00000002972 #19	DOCK8 (ENSBGRG00000003466) #21	ENSBGRG00000003655	KANK1 (ENSBGRG00000003717) #22	DMRT1 (ENSBGRG00000003868) #23	DMRT3 (ENSBGRG00000003946) #24	DMRT2 (ENSBGRG00000003984) #25	SMARCA2 (ENSBGRG00000004107) #27	VLDLR (ENSBGRG00000004545) #29	KCNV2 (ENSBGRG00000004767) #30	PUM3 (ENSBGRG00000004833) #31	ENSBGRG00000004951	RFX3 (ENSBGRG00000004985) #35	ENSBGRG00000005081	ENSBGRG00000005096	GLIS3 (ENSBGRG00000005123) #36	SLC1A1 (ENSBGRG00000005214)	SPATA6L (ENSBGRG00000005420)	PLPP6 (ENSBGRG00000005557)
Wild yak	MODERN SPECIES	1150								FXN (ENSBMUG00000009346) #13	PIP5K1B (ENSBMUG00000009326) #15	TMEM252 (ENSBMUG00000009272) #16	PGM5 (ENSBMUG00000009266) #17	ENSBMUG00000009246	ENSBMUG00000009244 #18	ENSBMUG00000008736 #19	DOCK8 (ENSBMUG00000008468) #21	KANK1 (ENSBMUG00000008397) #22	ENSBMUG00000008309 #23	DMRT3 (ENSBMUG00000008302) #24	DMRT2 (ENSBMUG00000008275) #25	SMARCA2 (ENSBMUG00000008202) #27
American bison	MODERN SPECIES	3328	MAMDC2 (ENSBBBG00000004784) #8	CFAP95 (ENSBBBG00000004778) #9	PTAR1 (ENSBBBG00000004773) #10	APBA1 (ENSBBBG00000004757) #11	ENTREP1 (ENSBBBG00000004748) #12	TJP2 (ENSBBBG00000018750) #14	FXN (ENSBBBG00000018035) #13	PIP5K1B (ENSBBBG00000008201) #15	PABIR1 (ENSBBBG00000017969)	TMEM252 (ENSBBBG00000017966) #16	PGM5 (ENSBBBG00000004418) #17	ENSBBBG00000017925	ENSBBBG00000017865 #19	DOCK8 (ENSBBBG00000017006) #21	ENSBBBG00000000733	KANK1 (ENSBBBG00000007906) #22	DMRT1 (ENSBBBG00000016649) #23	DMRT3 (ENSBBBG00000016636) #24	DMRT2 (ENSBBBG00000016627) #25	SMARCA2 (ENSBBBG00000004105) #27	ENSBBBG00000016209	VLDLR (ENSBBBG00000008333) #29	ENSBBBG00000007174	KCNV2 (ENSBBBG00000016123) #30	PUM3 (ENSBBBG00000007035) #31	RFX3 (ENSBBBG00000003993) #35	GLIS3 (ENSBBBG00000016019) #36	SLC1A1 (ENSBBBG00000015989)	SPATA6L (ENSBBBG00000015978)	PLPP6 (ENSBBBG00000015953)	ENSBBBG00000003969
Siberian musk deer	MODERN SPECIES	112	PTAR1 (ENSMMSG00000003980) #10	APBA1 (ENSMMSG00000003955) #11	ENTREP1 (ENSMMSG00000003933) #12	ENSMMSG00000003926	TJP2 (ENSMMSG00000003336) #14	FXN (ENSMMSG00000003257) #13	PIP5K1B (ENSMMSG00000003205) #15	PABIR1 (ENSMMSG00000003185)	ENSMMSG00000003177	TMEM252 (ENSMMSG00000003173) #16	PGM5 (ENSMMSG00000003148) #17	ENSMMSG00000003127 #18	ENSMMSG00000002933 #19	ENSMMSG00000002885	DOCK8 (ENSMMSG00000002837) #21	KANK1 (ENSMMSG00000002767) #22	ENSMMSG00000002748	DMRT1 (ENSMMSG00000002731) #23	DMRT3 (ENSMMSG00000002720) #24	DMRT2 (ENSMMSG00000002675) #25	ENSMMSG00000002655	SMARCA2 (ENSMMSG00000002325) #27	ENSMMSG00000002272
Yarkand deer	MODERN SPECIES	21	ENSCHYG00000020191	PTAR1 (ENSCHYG00000020094) #10	APBA1 (ENSCHYG00000019877) #11	ENTREP1 (ENSCHYG00000019624) #12	TJP2 (ENSCHYG00000017274) #14	FXN (ENSCHYG00000017028) #13	ENSCHYG00000016971	PIP5K1B (ENSCHYG00000016753) #15	PABIR1 (ENSCHYG00000016706)	TMEM252 (ENSCHYG00000016651) #16	ENSCHYG00000016626	PGM5 (ENSCHYG00000016305) #17	ENSCHYG00000016258 #18	ENSCHYG00000015376 #19	DOCK8 (ENSCHYG00000014734) #21	KANK1 (ENSCHYG00000014368) #22	ENSCHYG00000014288	DMRT1 (ENSCHYG00000014189) #23	DMRT3 (ENSCHYG00000026880) #24	DMRT2 (ENSCHYG00000026873) #25	SMARCA2 (ENSCHYG00000026820) #27	ENSCHYG00000026782	VLDLR (ENSCHYG00000026763) #29	KCNV2 (ENSCHYG00000026745) #30	PUM3 (ENSCHYG00000026723) #31	RFX3 (ENSCHYG00000026695) #35	GLIS3 (ENSCHYG00000026667) #36	SLC1A1 (ENSCHYG00000026638)	PLPP6 (ENSCHYG00000026621)	SPATA6L (ENSCHYG00000026599)	CDC37L1 (ENSCHYG00000026576)
Camelidae	ANCESTRAL SPECIES	5	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000169111	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Arabian camel	MODERN SPECIES	30	MAMDC2 (ENSCDRG00005001896) #8	CFAP95 (ENSCDRG00005001938) #9	PTAR1 (ENSCDRG00005001969) #10	APBA1 (ENSCDRG00005002013) #11	ENTREP1 (ENSCDRG00005002279) #12	TJP2 (ENSCDRG00005002337) #14	FXN (ENSCDRG00005002495) #13	PIP5K1B (ENSCDRG00005002534) #15	PABIR1 (ENSCDRG00005002619)	TMEM252 (ENSCDRG00005002626) #16	PGM5 (ENSCDRG00005002644) #17	ENSCDRG00005002664 #18	ENSCDRG00005002760 #19	ENSCDRG00005003094	DOCK8 (ENSCDRG00005003115) #21	KANK1 (ENSCDRG00005003188) #22	DMRT1 (ENSCDRG00005003226) #23	DMRT3 (ENSCDRG00005003237) #24	DMRT2 (ENSCDRG00005003248) #25	ENSCDRG00005003352 #27	VLDLR (ENSCDRG00005003699) #29	KCNV2 (ENSCDRG00005003822) #30	PUM3 (ENSCDRG00005003846) #31	ENSCDRG00005003916	RFX3 (ENSCDRG00005004007) #35	GLIS3 (ENSCDRG00005004109) #36	SLC1A1 (ENSCDRG00005004192)	SPATA6L (ENSCDRG00005004284)	PLPP6 (ENSCDRG00005004350)	CDC37L1 (ENSCDRG00005004358)	AK3 (ENSCDRG00005004398)
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Carnivora	ANCESTRAL SPECIES	25	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Caniformia	ANCESTRAL SPECIES	29	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000164995	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Ursidae	ANCESTRAL SPECIES	43	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Ursus	ANCESTRAL SPECIES	50	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT00940000166172	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
American black bear	MODERN SPECIES	2738																KANK1 (ENSUAMG00000021890) #22	ENSUAMG00000021889 #23	ENSUAMG00000021888 #23
Polar bear	MODERN SPECIES	171	KLF9 (ENSUMAG00000021920)	SMC5 (ENSUMAG00000021802)	MAMDC2 (ENSUMAG00000021684) #8	CFAP95 (ENSUMAG00000021672) #9	PTAR1 (ENSUMAG00000021667) #10	APBA1 (ENSUMAG00000021636) #11	ENTREP1 (ENSUMAG00000021620) #12	TJP2 (ENSUMAG00000020541) #14	ENSUMAG00000020328 #13	PIP5K1B (ENSUMAG00000020312) #15	PABIR1 (ENSUMAG00000020302)	TMEM252 (ENSUMAG00000020280) #16	PGM5 (ENSUMAG00000020142) #17	ENSUMAG00000020081 #19	DOCK8 (ENSUMAG00000019524) #21	KANK1 (ENSUMAG00000019362) #22	ENSUMAG00000019350 #23	DMRT2 (ENSUMAG00000019339) #25	ENSUMAG00000019328 #27	ENSUMAG00000019303 #27	VLDLR (ENSUMAG00000018747) #29	KCNV2 (ENSUMAG00000018690) #30	PUM3 (ENSUMAG00000018443) #31	ENSUMAG00000018187	ENSUMAG00000018118	RFX3 (ENSUMAG00000018101) #35	GLIS3 (ENSUMAG00000018031) #36	SLC1A1 (ENSUMAG00000017970)	ENSUMAG00000017954	SPATA6L (ENSUMAG00000017942)	CDC37L1 (ENSUMAG00000017926)
Giant Panda	MODERN SPECIES	8	KLF9 (ENSAMEG00000007114)	ENSAMEG00000007051 #7	MAMDC2 (ENSAMEG00000007021) #8	CFAP95 (ENSAMEG00000007019) #9	PTAR1 (ENSAMEG00000007011) #10	APBA1 (ENSAMEG00000006989) #11	ENTREP1 (ENSAMEG00000006981) #12	TJP2 (ENSAMEG00000006921) #14	ENSAMEG00000006915 #13	PIP5K1B (ENSAMEG00000008089) #15	TMEM252 (ENSAMEG00000008083) #16	PGM5 (ENSAMEG00000008064) #17	ENSAMEG00000025926 #18	ENSAMEG00000006824 #19	DOCK8 (ENSAMEG00000006698) #21	KANK1 (ENSAMEG00000006667) #22	DMRT3 (ENSAMEG00000006664) #24	DMRT2 (ENSAMEG00000006648) #25	ENSAMEG00000019747	SMARCA2 (ENSAMEG00000012325) #27	ENSAMEG00000027822	VLDLR (ENSAMEG00000012233) #29	KCNV2 (ENSAMEG00000012228) #30	PUM3 (ENSAMEG00000012187) #31	ENSAMEG00000012183	RFX3 (ENSAMEG00000012132) #35	GLIS3 (ENSAMEG00000002733) #36	SLC1A1 (ENSAMEG00000002682)	ENSAMEG00000002674	CDC37L1 (ENSAMEG00000002657)	AK3 (ENSAMEG00000002640)
Mustelinae	ANCESTRAL SPECIES	87	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
American mink	MODERN SPECIES	72	SMC5 (ENSNVIG00000010560)	MAMDC2 (ENSNVIG00000010507) #8	CFAP95 (ENSNVIG00000010477) #9	PTAR1 (ENSNVIG00000010455) #10	APBA1 (ENSNVIG00000010432) #11	ENTREP1 (ENSNVIG00000010390) #12	TJP2 (ENSNVIG00000009677) #14	ENSNVIG00000009630	FXN (ENSNVIG00000009610) #13	PIP5K1B (ENSNVIG00000009548) #15	CI071 (ENSNVIG00000009508) #16	PGM5 (ENSNVIG00000009442) #17	ENSNVIG00000009420 #18	ENSNVIG00000008929	DOCK8 (ENSNVIG00000008726) #21	KANK1 (ENSNVIG00000008630) #22	DMRT1 (ENSNVIG00000008608) #23	DMRT3 (ENSNVIG00000008601) #24	DMRT2 (ENSNVIG00000008589) #25	SMARCA2 (ENSNVIG00000008097) #27	VLDLR (ENSNVIG00000008014) #29	KCNV2 (ENSNVIG00000007991) #30	K0020 (ENSNVIG00000007919) #31	RFX3 (ENSNVIG00000007796) #35
Ferret	MODERN SPECIES	281														ENSMPUG00000005707	DOCK8 (ENSMPUG00000005223) #21	KANK1 (ENSMPUG00000005216) #22	DMRT1 (ENSMPUG00000005204) #23	DMRT2 (ENSMPUG00000005199) #25	ENSMPUG00000005192	SMARCA2 (ENSMPUG00000005171) #27	ENSMPUG00000005169	VLDLR (ENSMPUG00000005155) #29	KCNV2 (ENSMPUG00000005137) #30	PUM3 (ENSMPUG00000005125) #31	ENSMPUG00000005120	RFX3 (ENSMPUG00000005101) #35	GLIS3 (ENSMPUG00000005095) #36	SLC1A1 (ENSMPUG00000005081)	SPATA6L (ENSMPUG00000005024)	CDC37L1 (ENSMPUG00000005018)	AK3 (ENSMPUG00000005006)
Canidae	ANCESTRAL SPECIES	47	ENSGT01100000263674 #7	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00990000204089	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00990000204089	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00950000183030.m.a.b.a.a.a	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00950000182772.A.a.b.n.b	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Dog	MODERN SPECIES		MAMDC2 (ENSCAFG00845000707) #8	ENSCAFG00845000740	CFAP95 (ENSCAFG00845000762) #9	PTAR1 (ENSCAFG00845000783) #10	APBA1 (ENSCAFG00845000845) #11	ENTREP1 (ENSCAFG00845000882) #12	ENSCAFG00845000920	TJP2 (ENSCAFG00845001062) #14	FXN (ENSCAFG00845001342) #13	PIP5K1B (ENSCAFG00845001394) #15	TMEM252 (ENSCAFG00845001485) #16	PGM5 (ENSCAFG00845001506) #17	ENSCAFG00845001539	ZNG1A (ENSCAFG00845001577) #19	DOCK8 (ENSCAFG00845001647) #21	KANK1 (ENSCAFG00845001908) #22	DMRT1 (ENSCAFG00845001983) #23	DMRT3 (ENSCAFG00845002003) #24	DMRT2 (ENSCAFG00845002026) #25	ENSCAFG00845002045	SMARCA2 (ENSCAFG00845002161) #27	VLDLR (ENSCAFG00845002345) #29	KCNV2 (ENSCAFG00845002424) #30	PUM3 (ENSCAFG00845002440) #31	ENSCAFG00845002474	RFX3 (ENSCAFG00845002562) #35	ENSCAFG00845002739	GLIS3 (ENSCAFG00845002759) #36	SLC1A1 (ENSCAFG00845002818)	SPATA6L (ENSCAFG00845002856)	PLPP6 (ENSCAFG00845002916)
Dingo	MODERN SPECIES	125	ENTREP1 (ENSCAFG00020026587) #12	ENSCAFG00020026593	ENSCAFG00020026595	TJP2 (ENSCAFG00020026597) #14	FXN (ENSCAFG00020026605) #13	ENSCAFG00020026606	PIP5K1B (ENSCAFG00020026608) #15	PABIR1 (ENSCAFG00020026613)	TMEM252 (ENSCAFG00020026616) #16	PGM5 (ENSCAFG00020026619) #17	ENSCAFG00020026621	ENSCAFG00020026623 #19	ENSCAFG00020026625	ENSCAFG00020026627 #20	DOCK8 (ENSCAFG00020026637) #21	KANK1 (ENSCAFG00020026742) #22	DMRT1 (ENSCAFG00020026750) #23	DMRT3 (ENSCAFG00020026752) #24	DMRT2 (ENSCAFG00020026753) #25	ENSCAFG00020026759	ENSCAFG00020026766 #27	ENSCAFG00020026802 #27	ENSCAFG00020026863	VLDLR (ENSCAFG00020026865) #29	KCNV2 (ENSCAFG00020026866) #30	PUM3 (ENSCAFG00020026867) #31	RFX3 (ENSCAFG00020026868) #35	ENSCAFG00020026870	GLIS3 (ENSCAFG00020000104) #36	SLC1A1 (ENSCAFG00020000361)	SPATA6L (ENSCAFG00020000384)
Red fox	MODERN SPECIES	37	SMC5 (ENSVVUG00000003940) #7	MAMDC2 (ENSVVUG00000004006) #8	CUNH9orf135 (ENSVVUG00000004036) #9	PTAR1 (ENSVVUG00000004054) #10	ENSVVUG00000004075	APBA1 (ENSVVUG00000004105) #11	FAM189A2 (ENSVVUG00000004164) #12	ENSVVUG00000004192	TJP2 (ENSVVUG00000004207) #14	FXN (ENSVVUG00000004304) #13	PIP5K1B (ENSVVUG00000004306) #15	TMEM252 (ENSVVUG00000004338) #16	PGM5 (ENSVVUG00000004340) #17	ENSVVUG00000004359 #19	DOCK8 (ENSVVUG00000004407) #21	KANK1 (ENSVVUG00000004494) #22	DMRT1 (ENSVVUG00000004545) #23	DMRT3 (ENSVVUG00000004555) #24	DMRT2 (ENSVVUG00000004562) #25	ENSVVUG00000004580 #27	ENSVVUG00000004598 #27	VLDLR (ENSVVUG00000004925) #29	ENSVVUG00000006514	KCNV2 (ENSVVUG00000006518) #30	PUM3 (ENSVVUG00000006527) #31	ENSVVUG00000006545	RFX3 (ENSVVUG00000006609) #35	GLIS3 (ENSVVUG00000007122) #36	SLC1A1 (ENSVVUG00000007200)	SPATA6L (ENSVVUG00000007223)	ENSVVUG00000007267
Felidae	ANCESTRAL SPECIES	28	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00950000183123.g.a.a.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155028.q.b.e.b	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Panthera	ANCESTRAL SPECIES	34	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00950000183123.g.a.a.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155028.q.b.e.b	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907
Panthera_a	ANCESTRAL SPECIES	35	ENSGT01100000263674 #7	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00950000183123.g.a.a.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
lion	MODERN SPECIES	13	ENSPLOG00000012666 #7	MAMDC2 (ENSPLOG00000012728) #8	CFAP95 (ENSPLOG00000012861) #9	ENSPLOG00000012981	PTAR1 (ENSPLOG00000013055) #10	APBA1 (ENSPLOG00000013238) #11	ENTREP1 (ENSPLOG00000013369) #12	TJP2 (ENSPLOG00000013563) #14	FXN (ENSPLOG00000013999) #13	PIP5K1B (ENSPLOG00000014086) #15	TMEM252 (ENSPLOG00000014372) #16	PGM5 (ENSPLOG00000014414) #17	ENSPLOG00000014655 #18	ENSPLOG00000014827 #19	DOCK8 (ENSPLOG00000015754) #21	KANK1 (ENSPLOG00000016894) #22	DMRT1 (ENSPLOG00000017065) #23	DMRT3 (ENSPLOG00000017150) #24	DMRT2 (ENSPLOG00000017190) #25	SMARCA2 (ENSPLOG00000017478) #27	ENSPLOG00000017911	VLDLR (ENSPLOG00000017962) #29	KCNV2 (ENSPLOG00000018027) #30	PUM3 (ENSPLOG00000018076) #31	ENSPLOG00000018220	RFX3 (ENSPLOG00000018336) #35	GLIS3 (ENSPLOG00000018479) #36	SLC1A1 (ENSPLOG00000018538)	SPATA6L (ENSPLOG00000018652)	PLPP6 (ENSPLOG00000018812)	CDC37L1 (ENSPLOG00000018840)
leopard	MODERN SPECIES	42	ENSPPRG00000008590 #7	MAMDC2 (ENSPPRG00000008546) #8	CFAP95 (ENSPPRG00000008448) #9	PTAR1 (ENSPPRG00000008339) #10	APBA1 (ENSPPRG00000007808) #11	ENTREP1 (ENSPPRG00000007577) #12	TJP2 (ENSPPRG00000007262) #14	FXN (ENSPPRG00000006297) #13	PIP5K1B (ENSPPRG00000006228) #15	ENSPPRG00000005893	TMEM252 (ENSPPRG00000005826) #16	PGM5 (ENSPPRG00000005783) #17	ENSPPRG00000005661 #18	ENSPPRG00000005315 #19	DOCK8 (ENSPPRG00000003143) #21	KANK1 (ENSPPRG00000002516) #22	DMRT1 (ENSPPRG00000002380) #23	DMRT3 (ENSPPRG00000002367) #24	DMRT2 (ENSPPRG00000002109) #25	SMARCA2 (ENSPPRG00000001879) #27	ENSPPRG00000001027	VLDLR (ENSPPRG00000000915) #29	KCNV2 (ENSPPRG00000000862) #30	PUM3 (ENSPPRG00000000809) #31	ENSPPRG00000000748	RFX3 (ENSPPRG00000000606) #35	GLIS3 (ENSPPRG00000000400) #36	SLC1A1 (ENSPPRG00000000232)	SPATA6L (ENSPPRG00000000218)	PLPP6 (ENSPPRG00000019670)	CDC37L1 (ENSPPRG00000000059)
Tiger	MODERN SPECIES	101	KLF9 (ENSPTIG00000021162)	SMC5 (ENSPTIG00000020060)	MAMDC2 (ENSPTIG00000017465) #8	CFAP95 (ENSPTIG00000017058) #9	PTAR1 (ENSPTIG00000015696) #10	APBA1 (ENSPTIG00000014499) #11	ENTREP1 (ENSPTIG00000011116) #12	TJP2 (ENSPTIG00000018489) #14	FXN (ENSPTIG00000017563) #13	PIP5K1B (ENSPTIG00000014859) #15	ENSPTIG00000013949	TMEM252 (ENSPTIG00000013552) #16	PGM5 (ENSPTIG00000012225) #17	ENSPTIG00000017808 #19	DOCK8 (ENSPTIG00000008300) #21	KANK1 (ENSPTIG00000006046) #22	DMRT1 (ENSPTIG00000005309) #23	DMRT3 (ENSPTIG00000004916) #24	DMRT2 (ENSPTIG00000003639) #25
Cat	MODERN SPECIES	244	MAMDC2 (ENSFCAG00000027053) #8	CFAP95 (ENSFCAG00000000106) #9	PTAR1 (ENSFCAG00000014624) #10	APBA1 (ENSFCAG00000043283) #11	ENTREP1 (ENSFCAG00000014622) #12	TJP2 (ENSFCAG00000008814) #14	FXN (ENSFCAG00000031454) #13	PIP5K1B (ENSFCAG00000008812) #15	ENSFCAG00000050603	TMEM252 (ENSFCAG00000008053) #16	PGM5 (ENSFCAG00000008050) #17	ENSFCAG00000043244 #18	ENSFCAG00000012045 #19	ENSFCAG00000047266 #20	DOCK8 (ENSFCAG00000012046) #21	KANK1 (ENSFCAG00000006458) #22	DMRT1 (ENSFCAG00000006459) #23	DMRT3 (ENSFCAG00000036847) #24	DMRT2 (ENSFCAG00000006461) #25	SMARCA2 (ENSFCAG00000001568) #27	ENSFCAG00000041218	VLDLR (ENSFCAG00000013257) #29	KCNV2 (ENSFCAG00000004335) #30	ENSFCAG00000013260	RFX3 (ENSFCAG00000012950) #35	GLIS3 (ENSFCAG00000046401) #36	ENSFCAG00000037557	SLC1A1 (ENSFCAG00000023590)	PLPP6 (ENSFCAG00000038113)	SPATA6L (ENSFCAG00000002369)	CDC37L1 (ENSFCAG00000027076)
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Equus	ANCESTRAL SPECIES	37	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.m #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00410000028750 #20	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Donkey	MODERN SPECIES	15	ENSEASG00005009599	MAMDC2 (ENSEASG00005009600) #8	CFAP95 (ENSEASG00005009601) #9	ENSEASG00005031515	ENSEASG00005024635 #10	APBA1 (ENSEASG00005009603) #11	ENTREP1 (ENSEASG00005009605) #12	TJP2 (ENSEASG00005009607) #14	FXN (ENSEASG00005025449) #13	PIP5K1B (ENSEASG00005009622) #15	TMEM252 (ENSEASG00005032638) #16	PGM5 (ENSEASG00005009626) #17	ENSEASG00005009631 #18	ENSEASG00005009634 #19	DOCK8 (ENSEASG00005009734) #21	KANK1 (ENSEASG00005010292) #22	DMRT1 (ENSEASG00005010297) #23	DMRT3 (ENSEASG00005010303) #24	DMRT2 (ENSEASG00005010307) #25	ENSEASG00005032228 #27	ENSEASG00005033232 #27	ENSEASG00005010323	VLDLR (ENSEASG00005010330) #29	KCNV2 (ENSEASG00005010348) #30	PUM3 (ENSEASG00005010350) #31	ENSEASG00005010361	ENSEASG00005010358	RFX3 (ENSEASG00005010402) #35	GLIS3 (ENSEASG00005010634) #36	SLC1A1 (ENSEASG00005010637)	PLPP6 (ENSEASG00005010645)
Horse	MODERN SPECIES	15	APBA1 (ENSECAG00000000271) #11	ENSECAG00000057227	ENSECAG00000051226	ENTREP1 (ENSECAG00000012524) #12	TJP2 (ENSECAG00000016742) #14	FXN (ENSECAG00000019174) #13	PIP5K1B (ENSECAG00000019992) #15	PABIR1 (ENSECAG00000003116)	ENSECAG00000044520	PGM5 (ENSECAG00000010805) #17	TMEM252 (ENSECAG00000010049) #16	ENSECAG00000003227 #18	ENSECAG00000014036 #19	ENSECAG00000041352 #20	DOCK8 (ENSECAG00000011917) #21	KANK1 (ENSECAG00000016219) #22	DMRT1 (ENSECAG00000060160) #23	DMRT3 (ENSECAG00000023412) #24	DMRT2 (ENSECAG00000035701) #25	ENSECAG00000047891 #27	ENSECAG00000045647 #27	VLDLR (ENSECAG00000021859) #29	ENSECAG00000037169	KCNV2 (ENSECAG00000016602) #30	PUM3 (ENSECAG00000017193) #31	ENSECAG00000009736	RFX3 (ENSECAG00000011075) #35	GLIS3 (ENSECAG00000020544) #36	SLC1A1 (ENSECAG00000010935)	SPATA6L (ENSECAG00000021902)	PLPP6 (ENSECAG00000023969)
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Megabat	MODERN SPECIES	3896															DOCK8 (ENSPVAG00000014831) #21	KANK1 (ENSPVAG00000014838) #22
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00940000160905	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00940000156639 #15	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Microbat	MODERN SPECIES	1274						FXN (ENSMLUG00000016443) #13	ENSMLUG00000026887	ENSMLUG00000022332	PIP5K1B (ENSMLUG00000017346) #15	PABIR1 (ENSMLUG00000029695)	TMEM252 (ENSMLUG00000012853) #16	PGM5 (ENSMLUG00000012848) #17	ENSMLUG00000014374 #18	ENSMLUG00000014379 #19	DOCK8 (ENSMLUG00000016819) #21	KANK1 (ENSMLUG00000001345) #22
Greater horseshoe bat	MODERN SPECIES	3	TRPM3 (ENSRFEG00010008094)	KLF9 (ENSRFEG00010007946)	SMC5 (ENSRFEG00010007849)	MAMDC2 (ENSRFEG00010007687) #8	CFAP95 (ENSRFEG00010007629) #9	PTAR1 (ENSRFEG00010007537) #10	APBA1 (ENSRFEG00010007458) #11	ENTREP1 (ENSRFEG00010007317) #12	TJP2 (ENSRFEG00010007216) #14	PIP5K1B (ENSRFEG00010006963) #15	TMEM252 (ENSRFEG00010006856) #16	PGM5 (ENSRFEG00010006806) #17	ENSRFEG00010006757 #18	ENSRFEG00010006573 #19	DOCK8 (ENSRFEG00010006288) #21	KANK1 (ENSRFEG00010006153) #22	DMRT1 (ENSRFEG00010006049) #23	DMRT3 (ENSRFEG00010006020) #24	DMRT2 (ENSRFEG00010005950) #25	SMARCA2 (ENSRFEG00010005719) #27	VLDLR (ENSRFEG00010005438) #29	KCNV2 (ENSRFEG00010005355) #30	ENSRFEG00010005315 #31	ENSRFEG00010005258	RFX3 (ENSRFEG00010005210) #35	GLIS3 (ENSRFEG00010005187) #36	SLC1A1 (ENSRFEG00010005159)	ENSRFEG00010005145	PLPP6 (ENSRFEG00010005138)	SPATA6L (ENSRFEG00010005120)	CDC37L1 (ENSRFEG00010015324)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154886.a.a #22
Hedgehog	MODERN SPECIES	1035																KANK1 (ENSEEUG00000002334) #22
Common shrew	MODERN SPECIES	619																KANK1 (ENSSARG00000006671) #22
Atlantogenata	ANCESTRAL SPECIES	68							ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120
Xenarthra	ANCESTRAL SPECIES	516											ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25
Sloth	MODERN SPECIES	806																KANK1 (ENSCHOG00000002640) #22
Armadillo	MODERN SPECIES	1645									TMEM252 (ENSDNOG00000011016) #16	PGM5 (ENSDNOG00000010529) #17	ENSDNOG00000037709 #18	ENSDNOG00000034664 #19	DOCK8 (ENSDNOG00000002938) #21	ENSDNOG00000041022	ENSDNOG00000034702	KANK1 (ENSDNOG00000015638) #22	DMRT1 (ENSDNOG00000005457) #23	DMRT3 (ENSDNOG00000004047) #24	DMRT2 (ENSDNOG00000019464) #25
Afrotheria	ANCESTRAL SPECIES	145									ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896.n #36	ENSGT00940000156896.m #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Tenrec	MODERN SPECIES	1016																ENSETEG00000002917 #22
Afrotheria_a	ANCESTRAL SPECIES	145									ENSGT00940000156639 #15	ENSGT01050000248464	ENSGT00390000015476.d.b	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896.n #36	ENSGT00940000156896.m #36	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d
Elephant	DUPLICATION
Elephant	MODERN SPECIES	593					ENSLAFG00000030532	ENSLAFG00000031361	PIP5K1B (ENSLAFG00000007792) #15	ENSLAFG00000027844	PABIR1 (ENSLAFG00000016843)	ENSLAFG00000029981	TMEM252 (ENSLAFG00000015792) #16	PGM5 (ENSLAFG00000015785) #17	ENSLAFG00000006679 #19	DOCK8 (ENSLAFG00000010626) #21	ENSLAFG00000010633 #22	ENSLAFG00000031278 #22	ENSLAFG00000010638 #23	DMRT3 (ENSLAFG00000028125) #24	DMRT2 (ENSLAFG00000008510) #25	SMARCA2 (ENSLAFG00000014061) #27	VLDLR (ENSLAFG00000015211) #29	KCNV2 (ENSLAFG00000017292) #30	PUM3 (ENSLAFG00000017341) #31	RFX3 (ENSLAFG00000021602) #35	ENSLAFG00000031654 #36	ENSLAFG00000029971 #36	ENSLAFG00000026125	SLC1A1 (ENSLAFG00000001120)	PLPP6 (ENSLAFG00000001123)	SPATA6L (ENSLAFG00000001121)	CDC37L1 (ENSLAFG00000001125)
Elephant	MODERN SPECIES	593						ENSLAFG00000030532	ENSLAFG00000031361	PIP5K1B (ENSLAFG00000007792) #15	ENSLAFG00000027844	PABIR1 (ENSLAFG00000016843)	ENSLAFG00000029981	TMEM252 (ENSLAFG00000015792) #16	PGM5 (ENSLAFG00000015785) #17	ENSLAFG00000006679 #19	DOCK8 (ENSLAFG00000010626) #21	ENSLAFG00000010633 #22	ENSLAFG00000031278 #22	ENSLAFG00000010638 #23	DMRT3 (ENSLAFG00000028125) #24	DMRT2 (ENSLAFG00000008510) #25	SMARCA2 (ENSLAFG00000014061) #27	VLDLR (ENSLAFG00000015211) #29	KCNV2 (ENSLAFG00000017292) #30	PUM3 (ENSLAFG00000017341) #31	RFX3 (ENSLAFG00000021602) #35	ENSLAFG00000031654 #36	ENSLAFG00000029971 #36	ENSLAFG00000026125	SLC1A1 (ENSLAFG00000001120)	PLPP6 (ENSLAFG00000001123)	SPATA6L (ENSLAFG00000001121)
Hyrax	MODERN SPECIES	742																KANK1 (ENSPCAG00000002348) #22
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000164995	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00940000154259	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00940000154259.n	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b
Diprotodontia	ANCESTRAL SPECIES	21	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00940000154259.n	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b
Diprotodontia_a	ANCESTRAL SPECIES	17	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811.a #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000163353 #18	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00940000154259.n	ENSGT00940000162445	ENSGT00940000156061	ENSGT00940000158226	ENSGT01050000244941.A	ENSGT00550000074857	ENSGT00940000160271	ENSGT00390000007773	ENSGT00940000155421.b
Common wonbat	MODERN SPECIES	1066	KLF9 (ENSVURG00010007188)	SMC5 (ENSVURG00010007199)	MAMDC2 (ENSVURG00010007219) #8	CFAP95 (ENSVURG00010007235) #9	PTAR1 (ENSVURG00010007243) #10	APBA1 (ENSVURG00010007265) #11	ENTREP1 (ENSVURG00010007290) #12	TJP2 (ENSVURG00010007350) #14	ENSVURG00010007444 #13	PIP5K1B (ENSVURG00010007456) #15	ENSVURG00010007484 #16	PGM5 (ENSVURG00010007494) #17	ENSVURG00010007501 #18	ENSVURG00010007512 #19	DOCK8 (ENSVURG00010007566) #21	KANK1 (ENSVURG00010007648) #22	DMRT1 (ENSVURG00010007673) #23	DMRT3 (ENSVURG00010007680) #24	ENSVURG00010007684	DMRT2 (ENSVURG00010007688) #25	SMARCA2 (ENSVURG00010007727) #27	VLDLR (ENSVURG00010008117) #29	ENSVURG00010008151 #30	ENSVURG00010008158	ENSVURG00010008167	SVEP1 (ENSVURG00010008182)	MUSK (ENSVURG00010008274)	LPAR1 (ENSVURG00010008572)	SMC2 (ENSVURG00010008589)	ENSVURG00010008619	ENSVURG00010008671
koala	MODERN SPECIES	92	ENSPCIG00000010578	MAMDC2 (ENSPCIG00000010583) #8	ENSPCIG00000035736 #9	PTAR1 (ENSPCIG00000024714) #10	APBA1 (ENSPCIG00000030327) #11	ENTREP1 (ENSPCIG00000030326) #12	TJP2 (ENSPCIG00000030318) #14	ENSPCIG00000030316 #13	PIP5K1B (ENSPCIG00000030314) #15	ENSPCIG00000030312 #16	PGM5 (ENSPCIG00000030310) #17	ENSPCIG00000030308 #19	ENSPCIG00000031430	ENSPCIG00000035585 #21	ENSPCIG00000030200 #21	KANK1 (ENSPCIG00000030084) #22	ENSPCIG00000030081	DMRT1 (ENSPCIG00000030080) #23	DMRT3 (ENSPCIG00000030078) #24	DMRT2 (ENSPCIG00000030077) #25	SMARCA2 (ENSPCIG00000015658) #27	ENSPCIG00000015665	VLDLR (ENSPCIG00000010606) #29	KCNV2 (ENSPCIG00000010599) #30	ENSPCIG00000010598	ENSPCIG00000032183	SVEP1 (ENSPCIG00000015236)	MUSK (ENSPCIG00000015083)	LPAR1 (ENSPCIG00000015072)	SMC2 (ENSPCIG00000026558)	ABCC1 (ENSPCIG00000016945)
Wallaby	MODERN SPECIES	1651																KANK1 (ENSMEUG00000014466) #22
Tasmanian devil	MODERN SPECIES		C9orf85 (ENSSHAG00000001633)	ENSSHAG00000029743	GDA (ENSSHAG00000001275)	ZFAND5 (ENSSHAG00000027724)	ENSSHAG00000001209	ENSSHAG00000001019	ENSSHAG00000006135	ENSSHAG00000023898	ENSSHAG00000001482	ENSSHAG00000031308	NFIL3 (ENSSHAG00000030770)	ENSSHAG00000025064	ENSSHAG00000001579	ENSSHAG00000029291 #19	ENSSHAG00000000407 #21	ENSSHAG00000005856 #22	DMRT1 (ENSSHAG00000006920) #23	DMRT3 (ENSSHAG00000008620) #24	DMRT2 (ENSSHAG00000009329) #25	SMARCA2 (ENSSHAG00000007884) #27	VLDLR (ENSSHAG00000001123) #29	ENSSHAG00000025886 #30	ENSSHAG00000006739	ENSSHAG00000023521	SVEP1 (ENSSHAG00000027165)	MUSK (ENSSHAG00000001254)	ENSSHAG00000005546	ENSSHAG00000004265	ENSSHAG00000005536	MYH11 (ENSSHAG00000007381)	NDE1 (ENSSHAG00000008432)
Opossum	MODERN SPECIES	5	ENSMODG00000027611	PTAR1 (ENSMODG00000002821) #10	APBA1 (ENSMODG00000002848) #11	ENTREP1 (ENSMODG00000002869) #12	ENSMODG00000002938	ENSMODG00000002952 #13	PIP5K1B (ENSMODG00000003063) #15	TMEM252 (ENSMODG00000003092) #16	PGM5 (ENSMODG00000003131) #17	ENSMODG00000024854	ENSMODG00000044468 #18	ENSMODG00000039961	ENSMODG00000044962 #21	ENSMODG00000045417 #21	ENSMODG00000003306 #21	KANK1 (ENSMODG00000003387) #22	DMRT1 (ENSMODG00000003401) #23	DMRT3 (ENSMODG00000003407) #24	DMRT2 (ENSMODG00000003430) #25	ENSMODG00000024673	ENSMODG00000024839	SMARCA2 (ENSMODG00000003578) #27	ENSMODG00000041801	VLDLR (ENSMODG00000003620) #29	KCNV2 (ENSMODG00000003631) #30	ENSMODG00000049910	ENSMODG00000003635	SVEP1 (ENSMODG00000003939)	MUSK (ENSMODG00000003983)	LPAR1 (ENSMODG00000003999)	ENSMODG00000048116
Platypus	MODERN SPECIES	88	TRPM3 (ENSOANG00000005022)	KLF9 (ENSOANG00000005024)	ENSOANG00000005025	MAMDC2 (ENSOANG00000005026) #8	ENSOANG00000005027 #9	PTAR1 (ENSOANG00000005028) #10	APBA1 (ENSOANG00000002093) #11	ENTREP1 (ENSOANG00000003151) #12	TJP2 (ENSOANG00000013266) #14	PIP5K1B (ENSOANG00000013264) #15	ENSOANG00000028420 #16	PGM5 (ENSOANG00000012517) #17	ENSOANG00000040009 #18	ENSOANG00000012519 #19	DOCK8 (ENSOANG00000044143) #21	KANK1 (ENSOANG00000008293) #22	DMRT1 (ENSOANG00000036834) #23	DMRT3 (ENSOANG00000008295) #24	DMRT2 (ENSOANG00000008296) #25	ENSOANG00000008297	SMARCA2 (ENSOANG00000008299) #27	VLDLR (ENSOANG00000014993) #29	KCNV2 (ENSOANG00000014994) #30	PUM3 (ENSOANG00000014995) #31	ENSOANG00000043031	RFX3 (ENSOANG00000014996) #35	GLIS3 (ENSOANG00000014997) #36	SLC1A1 (ENSOANG00000013192)	ENSOANG00000039420	ENSOANG00000036739	CDC37L1 (ENSOANG00000001511)
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00950000185009	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00910000144227.t	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b
Archosauria	ANCESTRAL SPECIES	31	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00950000185009	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00910000144227.t	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	67	ENSCPRG00005005785	MAMDC2 (ENSCPRG00005005729) #8	CFAP95 (ENSCPRG00005005710) #9	ENSCPRG00005005695	PTAR1 (ENSCPRG00005005647) #10	ENSCPRG00005005637	APBA1 (ENSCPRG00005005588) #11	ENTREP1 (ENSCPRG00005005585) #12	ENSCPRG00005005571	FXN (ENSCPRG00005005552) #13	PIP5K1B (ENSCPRG00005005542) #15	TMEM252 (ENSCPRG00005005520) #16	PGM5 (ENSCPRG00005005087) #17	ENSCPRG00005005028 #19	DOCK8 (ENSCPRG00005004968) #21	KANK1 (ENSCPRG00005004939) #22	DMRT1 (ENSCPRG00005004893) #23	DMRT3 (ENSCPRG00005004879) #24	DMRT2 (ENSCPRG00005004868) #25	SMARCA2 (ENSCPRG00005004803) #27	ENSCPRG00005004774	VLDLR (ENSCPRG00005004758) #29	KCNV2 (ENSCPRG00005004751) #30	PUM3 (ENSCPRG00005004547) #31	ENSCPRG00005004519	RFX3 (ENSCPRG00005004493) #35	GLIS3 (ENSCPRG00005004466) #36	SLC1A1 (ENSCPRG00005004424)	SPATA6L (ENSCPRG00005004407)	CDC37L1 (ENSCPRG00005004396)	AK3 (ENSCPRG00005004395)
Australian saltwater crocodile	MODERN SPECIES	62	ENSCPRG00005013208	ENSCPRG00005013206	ENSCPRG00005013203	ENSCPRG00005013201	PARP2 (ENSCPRG00005013193)	ENSCPRG00005013185	ENSCPRG00005013163	OSGEP (ENSCPRG00005013077)	APEX1 (ENSCPRG00005013064)	PIP4P1 (ENSCPRG00005013059)	ENSCPRG00005013055	RNASE4 (ENSCPRG00005013052)	ENSCPRG00005013048	ANGPTL4 (ENSCPRG00005013045)	ENSCPRG00005013044	ENSCPRG00005013042 #22	ENSCPRG00005013036	NDUFA7 (ENSCPRG00005013033)	ENSCPRG00005013031	ENSCPRG00005013029	ENSCPRG00005013027	ENSCPRG00005013024	POLE4 (ENSCPRG00005013023)	ENSCPRG00005013005	ELAVL1 (ENSCPRG00005012995)	ZFR2 (ENSCPRG00005012851)	MATK (ENSCPRG00005012763)	ENSCPRG00005012745	ENSCPRG00005012742	ENSCPRG00005012729	MRPL54 (ENSCPRG00005012722)
Aves	ANCESTRAL SPECIES	45											ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	707					ENSSCUG00000015638	TSTD2 (ENSSCUG00000015657)	TMOD1 (ENSSCUG00000015661)	TDRD7 (ENSSCUG00000015669)	DGKQ (ENSSCUG00000015680)	ACO1 (ENSSCUG00000015695)	RIGI (ENSSCUG00000015734)	TMEM252 (ENSSCUG00000015786) #16	PGM5 (ENSSCUG00000015787) #17	ENSSCUG00000015790 #19	DOCK8 (ENSSCUG00000015802) #21	KANK1 (ENSSCUG00000015823) #22	DMRT1 (ENSSCUG00000015827) #23
African ostrich	MODERN SPECIES	436														ENSSCUG00000010130	ANGPTL4 (ENSSCUG00000010129)	ENSSCUG00000010128 #22	NDUFA7 (ENSSCUG00000010127)	ENSSCUG00000010126	ENSSCUG00000010125	ENSSCUG00000010124	ENSSCUG00000010123	ENSSCUG00000010122	ENSSCUG00000010121	ELAVL1 (ENSSCUG00000010120)	MATK (ENSSCUG00000010118)	ENSSCUG00000010117	ENSSCUG00000010116	ENSSCUG00000010115	APBA3 (ENSSCUG00000010114)	TJP3 (ENSSCUG00000010113)	PIP5K1C (ENSSCUG00000010111)
Neognathae	ANCESTRAL SPECIES	12	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000153288.a.b.a.a	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00940000153288.a.b.a.a	ENSGT00940000153288.a.b.a.b	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Great tit	MODERN SPECIES	642	UTP15 (ENSPMJG00000016171)	ANKRA2 (ENSPMJG00000016172)	ENSPMJG00000016174	ENSPMJG00000016175	TMEM174 (ENSPMJG00000016176)	TMEM171 (ENSPMJG00000016177)	FCHO2 (ENSPMJG00000016179)	TNPO1 (ENSPMJG00000016180)	ZNF366 (ENSPMJG00000016182)	MRPS27 (ENSPMJG00000016185)	MAP1B (ENSPMJG00000016186)	PGM5 (ENSPMJG00000016187) #17	ENSPMJG00000016188 #16	ENSPMJG00000016189 #19	DOCK8 (ENSPMJG00000016190) #21	KANK1 (ENSPMJG00000016191) #22	DMRT1 (ENSPMJG00000016192) #23	DMRT2 (ENSPMJG00000016193) #25	SMARCA2 (ENSPMJG00000016196) #27	VLDLR (ENSPMJG00000016197) #29	KCNV2 (ENSPMJG00000016198) #30	PUM3 (ENSPMJG00000016199) #31	ENSPMJG00000016200	RFX3 (ENSPMJG00000016201) #35	GLIS3 (ENSPMJG00000016202) #36	SLC1A1 (ENSPMJG00000016203)	ENSPMJG00000016204	ENSPMJG00000016205	CDC37L1 (ENSPMJG00000016206)	AK3 (ENSPMJG00000016207)	RCL1 (ENSPMJG00000016208)
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00940000157156	ENSGT00940000153288.a.b.a.a	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #35	ENSGT01100000265023	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00940000157156	ENSGT00940000153288.a.b.a.a	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #35	ENSGT01100000265023	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00940000155319.g.b.a.b	ENSGT00960000189358
Passeroidea	ANCESTRAL SPECIES	23	ENSGT00940000157156	ENSGT00940000153288.a.b.a.a	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000162777.a.a.a.a	ENSGT01050000244879.a.a.b.e #35	ENSGT01100000265023	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00940000155319.g.b.a.b	ENSGT00960000189358
Common canary	MODERN SPECIES	25	UTP15 (ENSSCAG00000004749)	ANKRA2 (ENSSCAG00000004745)	BTF3 (ENSSCAG00000004740)	TMEM174 (ENSSCAG00000004734)	TMEM171 (ENSSCAG00000004732)	FCHO2 (ENSSCAG00000004714)	ENSSCAG00000004350	ZNF366 (ENSSCAG00000004281)	PTCD2 (ENSSCAG00000004277)	MRPS27 (ENSSCAG00000004269)	ENSSCAG00000004262	TMEM252 (ENSSCAG00000004252) #16	PGM5 (ENSSCAG00000004248) #17	ENSSCAG00000004163 #19	DOCK8 (ENSSCAG00000003379) #21	KANK1 (ENSSCAG00000003206) #22	ENSSCAG00000003201	DMRT1 (ENSSCAG00000003198) #23	DMRT3 (ENSSCAG00000003195) #24	DMRT2 (ENSSCAG00000003191) #25	SMARCA2 (ENSSCAG00000003181) #27	VLDLR (ENSSCAG00000003171) #29	KCNV2 (ENSSCAG00000003167) #30	PUM3 (ENSSCAG00000003162) #31	ENSSCAG00000003143	ENSSCAG00000003133 #35	ENSSCAG00000003109	PTPRD (ENSSCAG00000002170)	TYRP1 (ENSSCAG00000001949)	MPDZ (ENSSCAG00000001857)	NFIB (ENSSCAG00000001799)
Zebra finch	MODERN SPECIES	104	ANKRA2 (ENSTGUG00000005875)	BTF3 (ENSTGUG00000005853)	ENSTGUG00000020640	TMEM174 (ENSTGUG00000005844)	TMEM171 (ENSTGUG00000005840)	FCHO2 (ENSTGUG00000005780)	TNPO1 (ENSTGUG00000005729)	ZNF366 (ENSTGUG00000005717)	PTCD2 (ENSTGUG00000005705)	MRPS27 (ENSTGUG00000005691)	MAP1B (ENSTGUG00000005669)	TMEM252 (ENSTGUG00000005666) #16	PGM5 (ENSTGUG00000005644) #17	ENSTGUG00000005631 #19	DOCK8 (ENSTGUG00000005550) #21	KANK1 (ENSTGUG00000005531) #22	DMRT1 (ENSTGUG00000005524) #23	DMRT3 (ENSTGUG00000005521) #24	DMRT2 (ENSTGUG00000005515) #25	SMARCA2 (ENSTGUG00000005460) #27	VLDLR (ENSTGUG00000005386) #29	ENSTGUG00000005381	KCNV2 (ENSTGUG00000018853) #30	PUM3 (ENSTGUG00000005339) #31	ENSTGUG00000005327	RFX3 (ENSTGUG00000005287) #35	ENSTGUG00000022949	ENSTGUG00000024012	GLIS3 (ENSTGUG00000005266) #36	SLC1A1 (ENSTGUG00000005214)	ENSTGUG00000005203
Medium ground finch	MODERN SPECIES	165						ZNF366 (ENSGFOG00000011222)	PTCD2 (ENSGFOG00000011214)	MRPS27 (ENSGFOG00000011203)	ENSGFOG00000011197	ENSGFOG00000011192 #16	PGM5 (ENSGFOG00000011183) #17	ENSGFOG00000011177 #19	ENSGFOG00000011169 #21	ENSGFOG00000011163 #21	ENSGFOG00000011159 #21	KANK1 (ENSGFOG00000011149) #22	DMRT2 (ENSGFOG00000011147) #25	SMARCA2 (ENSGFOG00000011122) #27	VLDLR (ENSGFOG00000009041) #29	KCNV2 (ENSGFOG00000008864) #30	PUM3 (ENSGFOG00000008804) #31	ENSGFOG00000008784	ENSGFOG00000008755 #35
Flycatcher	MODERN SPECIES	561	UTP15 (ENSFALG00000010206)	ANKRA2 (ENSFALG00000010222)	BTF3 (ENSFALG00000010233)	ENSFALG00000021806	TMEM174 (ENSFALG00000010257)	TNPO1 (ENSFALG00000010292)	ZNF366 (ENSFALG00000010297)	PTCD2 (ENSFALG00000010299)	MRPS27 (ENSFALG00000010306)	ENSFALG00000010312	ENSFALG00000025792	ENSFALG00000023216 #16	ENSFALG00000010321 #17	ENSFALG00000010329 #19	DOCK8 (ENSFALG00000010346) #21	KANK1 (ENSFALG00000010385) #22	DMRT1 (ENSFALG00000010388) #23	DMRT3 (ENSFALG00000010391) #24	DMRT2 (ENSFALG00000010393) #25	ENSFALG00000023612	SMARCA2 (ENSFALG00000010416) #27	VLDLR (ENSFALG00000010477) #29	KCNV2 (ENSFALG00000010508) #30	PUM3 (ENSFALG00000010509) #31	ENSFALG00000010512	RFX3 (ENSFALG00000010515) #35	ENSFALG00000027595	GLIS3 (ENSFALG00000010519) #36	SLC1A1 (ENSFALG00000010522)	ENSFALG00000014597	ENSFALG00000010526
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000153288.a.a	ENSGT00940000157140.b.a.b.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105.n.b	ENSGT00940000155389.d.a	ENSGT00940000155389.c	ENSGT00940000155498.h	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	19	ENSSHBG00005020665	TMEM174 (ENSSHBG00005020659)	TMEM171 (ENSSHBG00005020656)	ENSSHBG00005020644	ENSSHBG00005020635	ENSSHBG00005020632	ENSSHBG00005020631	PTCD2 (ENSSHBG00005020628)	MRPS27 (ENSSHBG00005020624)	ENSSHBG00005020612	ENSSHBG00005020611	TMEM252 (ENSSHBG00005020607) #16	PGM5 (ENSSHBG00005020602) #17	ENSSHBG00005020597 #19	DOCK8 (ENSSHBG00005020306) #21	ENSSHBG00005020200 #22	ENSSHBG00005020196 #22	DMRT1 (ENSSHBG00005020193) #23	DMRT3 (ENSSHBG00005020188) #24	DMRT2 (ENSSHBG00005020185) #25	SMARCA2 (ENSSHBG00005017989) #27	VLDLR (ENSSHBG00005017636) #29	KCNV2 (ENSSHBG00005017626) #30	PUM3 (ENSSHBG00005017598) #31	ENSSHBG00005017578	ENSSHBG00005017571 #35	GLIS3 (ENSSHBG00005017563) #36	AK3 (ENSSHBG00005017556)	CDC37L1 (ENSSHBG00005017553)	SLC1A1 (ENSSHBG00005017548)	RCL1 (ENSSHBG00005017541)
Kakapo	MODERN SPECIES	19	TMEM174 (ENSSHBG00005020659)	TMEM171 (ENSSHBG00005020656)	ENSSHBG00005020644	ENSSHBG00005020635	ENSSHBG00005020632	ENSSHBG00005020631	PTCD2 (ENSSHBG00005020628)	MRPS27 (ENSSHBG00005020624)	ENSSHBG00005020612	ENSSHBG00005020611	TMEM252 (ENSSHBG00005020607) #16	PGM5 (ENSSHBG00005020602) #17	ENSSHBG00005020597 #19	DOCK8 (ENSSHBG00005020306) #21	ENSSHBG00005020200 #22	ENSSHBG00005020196 #22	DMRT1 (ENSSHBG00005020193) #23	DMRT3 (ENSSHBG00005020188) #24	DMRT2 (ENSSHBG00005020185) #25	SMARCA2 (ENSSHBG00005017989) #27	VLDLR (ENSSHBG00005017636) #29	KCNV2 (ENSSHBG00005017626) #30	PUM3 (ENSSHBG00005017598) #31	ENSSHBG00005017578	ENSSHBG00005017571 #35	GLIS3 (ENSSHBG00005017563) #36	AK3 (ENSSHBG00005017556)	CDC37L1 (ENSSHBG00005017553)	SLC1A1 (ENSSHBG00005017548)	RCL1 (ENSSHBG00005017541)	JAK2 (ENSSHBG00005017499)
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	91	FOXD1 (ENSACCG00020016825)	TMEM174 (ENSACCG00020016823)	TMEM171 (ENSACCG00020016822)	FCHO2 (ENSACCG00020016814)	TNPO1 (ENSACCG00020016800)	ZNF366 (ENSACCG00020016792)	PTCD2 (ENSACCG00020016781)	MRPS27 (ENSACCG00020016774)	ENSACCG00020016767	ENSACCG00020016763	TMEM252 (ENSACCG00020016759) #16	PGM5 (ENSACCG00020016754) #17	ENSACCG00020016750 #19	DOCK8 (ENSACCG00020016450) #21	ENSACCG00020014971 #22	ENSACCG00020014951 #22	DMRT1 (ENSACCG00020014930) #23	DMRT3 (ENSACCG00020014910) #24	DMRT2 (ENSACCG00020014901) #25	SMARCA2 (ENSACCG00020014838) #27	VLDLR (ENSACCG00020014749) #29	KCNV2 (ENSACCG00020014716) #30	PUM3 (ENSACCG00020014700) #31	ENSACCG00020014683	RFX3 (ENSACCG00020014653) #35	GLIS3 (ENSACCG00020014613) #36	SLC1A1 (ENSACCG00020014593)	CDC37L1 (ENSACCG00020014575)	AK3 (ENSACCG00020014563)	RCL1 (ENSACCG00020014540)	JAK2 (ENSACCG00020014493)
Golden eagle	MODERN SPECIES	91	ENSACCG00020016826	FOXD1 (ENSACCG00020016825)	TMEM174 (ENSACCG00020016823)	TMEM171 (ENSACCG00020016822)	FCHO2 (ENSACCG00020016814)	TNPO1 (ENSACCG00020016800)	ZNF366 (ENSACCG00020016792)	PTCD2 (ENSACCG00020016781)	MRPS27 (ENSACCG00020016774)	ENSACCG00020016767	ENSACCG00020016763	TMEM252 (ENSACCG00020016759) #16	PGM5 (ENSACCG00020016754) #17	ENSACCG00020016750 #19	DOCK8 (ENSACCG00020016450) #21	ENSACCG00020014971 #22	ENSACCG00020014951 #22	DMRT1 (ENSACCG00020014930) #23	DMRT3 (ENSACCG00020014910) #24	DMRT2 (ENSACCG00020014901) #25	SMARCA2 (ENSACCG00020014838) #27	VLDLR (ENSACCG00020014749) #29	KCNV2 (ENSACCG00020014716) #30	PUM3 (ENSACCG00020014700) #31	ENSACCG00020014683	RFX3 (ENSACCG00020014653) #35	GLIS3 (ENSACCG00020014613) #36	SLC1A1 (ENSACCG00020014593)	CDC37L1 (ENSACCG00020014575)	AK3 (ENSACCG00020014563)	RCL1 (ENSACCG00020014540)
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00940000153288.a.b.a.a	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Anatidae	ANCESTRAL SPECIES	20	ENSGT00940000161645.a	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d.c	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a
Pink-footed goose	MODERN SPECIES	250												TMEM252 (ENSABRG00000011071) #16	PGM5 (ENSABRG00000011072) #17	ENSABRG00000011081 #19	DOCK8 (ENSABRG00000011565) #21	KANK1 (ENSABRG00000017500) #22	DMRT3 (ENSABRG00000017516) #24	DMRT2 (ENSABRG00000017525) #25
Duck	MODERN SPECIES	4281	TMEM174 (ENSAPLG00000019942)	TMEM171 (ENSAPLG00000009115)	FCHO2 (ENSAPLG00000009230)	TNPO1 (ENSAPLG00000009619)	ENSAPLG00000022145	ZNF366 (ENSAPLG00000010278)	ENSAPLG00000019695	MRPS27 (ENSAPLG00000010577)	MAP1B (ENSAPLG00000030918)	PGM5 (ENSAPLG00000011043) #17	TMEM252 (ENSAPLG00000010990) #16	ENSAPLG00000012182 #19	ENSAPLG00000025062	ENSAPLG00000017480 #21	ENSAPLG00000012724 #21	KANK1 (ENSAPLG00000020411) #22	DMRT3 (ENSAPLG00000013743) #24	DMRT2 (ENSAPLG00000013872) #25	SMARCA2 (ENSAPLG00000013873) #27	ENSAPLG00000015474 #29	KCNV2 (ENSAPLG00000018126) #30	PUM3 (ENSAPLG00000002920) #31	ENSAPLG00000019362	RFX3 (ENSAPLG00000011096) #35	GLIS3 (ENSAPLG00000014844) #36	SLC1A1 (ENSAPLG00000015022)	CDC37L1 (ENSAPLG00000006614)	AK3 (ENSAPLG00000006356)	RCL1 (ENSAPLG00000006031)	JAK2 (ENSAPLG00000004748)	ENSAPLG00000011419
Phasianidae	DUPLICATION
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000153288.a.b.a.b	ENSGT00940000153288.a.b.a.a	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876.e.a #21	ENSGT00940000154886.a.a.db.a #22	ENSGT00940000154886.a.a.db.b #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640
Japanese quail	MODERN SPECIES	699	BTF3 (ENSCJPG00005002024)	TMEM174 (ENSCJPG00005002042)	TMEM171 (ENSCJPG00005002046)	ENSCJPG00005002050	ENSCJPG00005002058	ENSCJPG00005002062	ENSCJPG00005002070	ZNF366 (ENSCJPG00005002079)	PTCD2 (ENSCJPG00005002087)	MRPS27 (ENSCJPG00005002094)	MAP1B (ENSCJPG00005002102)	TMEM252 (ENSCJPG00005002105) #16	PGM5 (ENSCJPG00005002107) #17	ENSCJPG00005002115 #19	DOCK8 (ENSCJPG00005002158) #21	KANK1 (ENSCJPG00005002171) #22	DMRT1 (ENSCJPG00005002189) #23	DMRT3 (ENSCJPG00005002191) #24	DMRT2 (ENSCJPG00005002194) #25	SMARCA2 (ENSCJPG00005002199) #27	VLDLR (ENSCJPG00005002212) #29	KCNV2 (ENSCJPG00005003166) #30	PUM3 (ENSCJPG00005003170) #31	RFX3 (ENSCJPG00005003180) #35	GLIS3 (ENSCJPG00005003188) #36	SLC1A1 (ENSCJPG00005003195)	CDC37L1 (ENSCJPG00005003200)	AK3 (ENSCJPG00005003204)	RCL1 (ENSCJPG00005003205)	JAK2 (ENSCJPG00005003214)	ENSCJPG00005003229
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00390000004228	ENSGT00940000157156	ENSGT00940000153288.a.b.a.b	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876.e.a #21	ENSGT00940000154886.a.a.db.a #22	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a	ENSGT00940000161373
Turkey	MODERN SPECIES	1299	ENSMGAG00000022603	ENSMGAG00000001400	ENSMGAG00000021702	FAM169A (ENSMGAG00000003916)	ENSMGAG00000005446	GCNT4 (ENSMGAG00000004933)	TMEM174 (ENSMGAG00000004988)	TMEM171 (ENSMGAG00000004961)	ENSMGAG00000004969	ENSMGAG00000019697	TNPO1 (ENSMGAG00000022497)	ZNF366 (ENSMGAG00000005028)	MRPS27 (ENSMGAG00000004213)	ENSMGAG00000018227	ENSMGAG00000004723	ENSMGAG00000005094 #22	ENSMGAG00000022563 #21	ENSMGAG00000005034 #21	ENSMGAG00000022224 #21	ENSMGAG00000005135	ENSMGAG00000018973 #19	ENSMGAG00000017142 #17	ENSMGAG00000020678 #16	ENSMGAG00000019468 #22	ENSMGAG00000005156 #23	ENSMGAG00000021756	ENSMGAG00000016103 #25	ENSMGAG00000002255 #31	KCNV2 (ENSMGAG00000001039) #30	VLDLR (ENSMGAG00000003673) #29	ENSMGAG00000016991 #27
Chicken	MODERN SPECIES	131	ANKRA2 (ENSGALG00010011774)	BTF3 (ENSGALG00010010447)	TMEM174 (ENSGALG00010012023)	TMEM171 (ENSGALG00010012087)	ENSGALG00010012110	FCHO2 (ENSGALG00010013297)	TNPO1 (ENSGALG00010010186)	ZNF366 (ENSGALG00010012008)	PTCD2 (ENSGALG00010011572)	MRPS27 (ENSGALG00010011649)	MAP1B (ENSGALG00010011681)	TMEM252 (ENSGALG00010011444) #16	PGM5 (ENSGALG00010011887) #17	CBWD1 (ENSGALG00010011287) #19	DOCK8 (ENSGALG00010011311) #21	KANK1 (ENSGALG00010011351) #22	DMRT1 (ENSGALG00010011437) #24	ENSGALG00010011462	DMRT2 (ENSGALG00010011482) #25	SMARCA2 (ENSGALG00010011808) #27	VLDLR (ENSGALG00010011837) #29	KCNV2 (ENSGALG00010010198) #30	PUM3 (ENSGALG00010011384) #31	RFX3 (ENSGALG00010011873) #35	GLIS3 (ENSGALG00010010147) #36	SLC1A1 (ENSGALG00010011937)	CDC37L1 (ENSGALG00010011133)	AK3 (ENSGALG00010011143)	RCL1 (ENSGALG00010011222)	JAK2 (ENSGALG00010012833)	RLN3 (ENSGALG00010012847)
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000153288.a.b.a.a	ENSGT00390000004161	ENSGT00390000017024	ENSGT00940000157105	ENSGT00940000155389.d	ENSGT00940000155389.c	ENSGT00940000155498	ENSGT00390000009329	ENSGT00390000007246	ENSGT00940000155897.mb.a	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876.e.a #21	ENSGT00940000154886.a.a.db.a #22	ENSGT00940000154886.a.a.db.b #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT01050000244879.a.a.b.e #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a	ENSGT00940000155640	ENSGT00940000154396.a
Phasianidae_b	ANCESTRAL SPECIES	111																ENSGT00940000154886.a.a.db.b #22	ENSGT00940000156489 #23
Turkey	MODERN SPECIES	1299	ENSMGAG00000004969	ENSMGAG00000019697	TNPO1 (ENSMGAG00000022497)	ZNF366 (ENSMGAG00000005028)	MRPS27 (ENSMGAG00000004213)	ENSMGAG00000018227	ENSMGAG00000004723	ENSMGAG00000005094 #22	ENSMGAG00000022563 #21	ENSMGAG00000005034 #21	ENSMGAG00000022224 #21	ENSMGAG00000005135	ENSMGAG00000018973 #19	ENSMGAG00000017142 #17	ENSMGAG00000020678 #16	ENSMGAG00000019468 #22	ENSMGAG00000005156 #23	ENSMGAG00000021756	ENSMGAG00000016103 #25	ENSMGAG00000002255 #31	KCNV2 (ENSMGAG00000001039) #30	VLDLR (ENSMGAG00000003673) #29	ENSMGAG00000016991 #27	ENSMGAG00000019982	SLC1A1 (ENSMGAG00000005250)	CDC37L1 (ENSMGAG00000005316)	AK3 (ENSMGAG00000005306)	ENSMGAG00000021960	ENSMGAG00000002245	JAK2 (ENSMGAG00000005291)	ENSMGAG00000016647
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000154886.a.a.eb #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000154886.a.a.eb #22
Turkey	MODERN SPECIES	23	ENSMGAG00000020607	ENSMGAG00000021121	ENSMGAG00000010163	ENSMGAG00000022044	ENSMGAG00000000808	ENSMGAG00000000763	ENSMGAG00000000877	ENSMGAG00000000852	ENSMGAG00000019659	ENSMGAG00000000850	ENSMGAG00000000846	MARCHF2 (ENSMGAG00000000837)	ENSMGAG00000000832	ENSMGAG00000006435	ENSMGAG00000018454	ENSMGAG00000007623 #22	ENSMGAG00000020045	ENSMGAG00000017295	ENSMGAG00000007590	ENSMGAG00000001030	ENSMGAG00000001015	MATK (ENSMGAG00000000903)	ENSMGAG00000021609	ENSMGAG00000017507	ENSMGAG00000000927	ENSMGAG00000000932	APBA3 (ENSMGAG00000000958)	TJP3 (ENSMGAG00000000963)	PIP5K1C (ENSMGAG00000001308)	ENSMGAG00000001353	TBXA2R (ENSMGAG00000015732)
Cryptodira	ANCESTRAL SPECIES	48	ENSGT00390000014593 #9	ENSGT00950000185009	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00950000185504	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d
Chinese turtle	MODERN SPECIES	2218	KLF9 (ENSPSIG00000009426)	ENSPSIG00000009487	MAMDC2 (ENSPSIG00000009692) #8	CFAP95 (ENSPSIG00000010429) #9	ENSPSIG00000010622	PTAR1 (ENSPSIG00000010871) #10	APBA1 (ENSPSIG00000010992) #11	ENTREP1 (ENSPSIG00000011516) #12	ENSPSIG00000011823	FXN (ENSPSIG00000014478) #13	PIP5K1B (ENSPSIG00000014991) #15	PGM5 (ENSPSIG00000016282) #17	ENSPSIG00000017206 #19	DOCK8 (ENSPSIG00000010032) #21	ENSPSIG00000012215	KANK1 (ENSPSIG00000012412) #22	DMRT1 (ENSPSIG00000013048) #23	ENSPSIG00000000444	DMRT2 (ENSPSIG00000013575) #25	ENSPSIG00000000453	RSPH1 (ENSPSIG00000013753)	SLC37A1 (ENSPSIG00000013862)	PDE9A (ENSPSIG00000015118)	WDR4 (ENSPSIG00000017237)	NDUFV3 (ENSPSIG00000017660)	PKNOX1 (ENSPSIG00000017680)	ENSPSIG00000018134	CBS (ENSPSIG00000018147)	U2AF1 (ENSPSIG00000007232)	CRYAA (ENSPSIG00000007237)	SIK1 (ENSPSIG00000007456)
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00390000014593 #9	ENSGT00950000185009	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00950000185504	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d
Emydidae	ANCESTRAL SPECIES	20	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00950000185009	ENSGT00950000185876	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00950000185504	ENSGT00940000154886.a.a #22	ENSGT00960000189645	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
painted turtle	MODERN SPECIES	15	PARVG (ENSCPBG00000025289)	ENSCPBG00000025293	SHISAL1 (ENSCPBG00000025296)	PTAR1 (ENSCPBG00000025304) #10	ENSCPBG00000025309	APBA1 (ENSCPBG00000025317) #11	ENTREP1 (ENSCPBG00000025326) #12	TJP2 (ENSCPBG00000025332) #14	FXN (ENSCPBG00000025340) #13	PIP5K1B (ENSCPBG00000025343) #15	TMEM252 (ENSCPBG00000025354) #16	PGM5 (ENSCPBG00000025365) #17	ENSCPBG00000025429 #19	DOCK8 (ENSCPBG00000025439) #21	ENSCPBG00000025452	KANK1 (ENSCPBG00000025457) #22	DMRT1 (ENSCPBG00000025458) #23	DMRT3 (ENSCPBG00000025461) #24	DMRT2 (ENSCPBG00000025462) #25	SMARCA2 (ENSCPBG00000025463) #27	VLDLR (ENSCPBG00000025468) #29	KCNV2 (ENSCPBG00000025469) #30	PUM3 (ENSCPBG00000025470) #31	ENSCPBG00000025471	RFX3 (ENSCPBG00000025473) #35	GLIS3 (ENSCPBG00000025474) #36	SLC1A1 (ENSCPBG00000025475)	SPATA6L (ENSCPBG00000025478)	CDC37L1 (ENSCPBG00000025479)	AK3 (ENSCPBG00000025480)	RCL1 (ENSCPBG00000025481)
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	50	KLF9 (ENSTMTG00000004548)	ENSTMTG00000004566	MAMDC2 (ENSTMTG00000004680) #8	ENSTMTG00000004735	PTAR1 (ENSTMTG00000004743) #10	APBA1 (ENSTMTG00000004858) #11	ENTREP1 (ENSTMTG00000005867) #12	TJP2 (ENSTMTG00000005907) #14	FXN (ENSTMTG00000005998) #13	PIP5K1B (ENSTMTG00000006026) #15	TMEM252 (ENSTMTG00000006221) #16	PGM5 (ENSTMTG00000006248) #17	ENSTMTG00000006284 #19	DOCK8 (ENSTMTG00000006799) #21	ENSTMTG00000015924	KANK1 (ENSTMTG00000015933) #22	ENSTMTG00000015959	DMRT1 (ENSTMTG00000015977) #23	DMRT3 (ENSTMTG00000015991) #24	DMRT2 (ENSTMTG00000016004) #25	SMARCA2 (ENSTMTG00000016037) #27	VLDLR (ENSTMTG00000016110) #29	KCNV2 (ENSTMTG00000016251) #30	PUM3 (ENSTMTG00000016264) #31	ENSTMTG00000016298	RFX3 (ENSTMTG00000016347) #35	GLIS3 (ENSTMTG00000016537) #36	SLC1A1 (ENSTMTG00000016551)	SPATA6L (ENSTMTG00000016584)	CDC37L1 (ENSTMTG00000016607)	AK3 (ENSTMTG00000016623)
Three-toed box turtle	MODERN SPECIES	323	ENSTMTG00000020844	ENSTMTG00000020835	ENSTMTG00000020824	ENSTMTG00000020807	ENSTMTG00000020800	ENSTMTG00000020795	ENSTMTG00000020643	ENSTMTG00000020619	FBN3 (ENSTMTG00000019349)	CTXN1 (ENSTMTG00000019144)	TIMM44 (ENSTMTG00000019096)	HNRNPM (ENSTMTG00000018939)	MARCHF2 (ENSTMTG00000018916)	ENSTMTG00000018897	ANGPTL4 (ENSTMTG00000018884)	ENSTMTG00000018856 #22	ENSTMTG00000018843	NDUFA7 (ENSTMTG00000018834)	ENSTMTG00000018828	ENSTMTG00000018819	ENSTMTG00000018804	ENSTMTG00000018784
Testudinidae	DUPLICATION
Testudinidae	DUPLICATION
Testudinidae	ANCESTRAL SPECIES	49						ENSGT00940000163715.b	ENSGT01030000234515.a.b.b.c.d	ENSGT01030000234515.a.b.b.c.c	ENSGT00950000183158.B.b	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000154595	ENSGT00940000158995	ENSGT00940000161659	ENSGT00940000159478	ENSGT00940000154886.a.a.hb.a #22	ENSGT00910000144227.s.a	ENSGT00390000006553.i	ENSGT00940000164521	ENSGT00940000165063	ENSGT00390000005847	ENSGT00940000160888	ENSGT00940000164644	ENSGT00940000155528	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163917.b	ENSGT00390000018044.b.b	ENSGT00390000001201	ENSGT00940000160384	ENSGT00940000160036
Goode s thornscrub tortoise	MODERN SPECIES	14	ENSGEVG00005017948	ENSGEVG00005017925	ENSGEVG00005017895	ENSGEVG00005017885	ENSGEVG00005017860	ENSGEVG00005017835	FBN3 (ENSGEVG00005017147)	CTXN1 (ENSGEVG00005017067)	ENSGEVG00005017044	TIMM44 (ENSGEVG00005017014)	ENSGEVG00005016972	ENSGEVG00005016957	MARCHF2 (ENSGEVG00005016941)	RAB11B (ENSGEVG00005016921)	ANGPTL4 (ENSGEVG00005016482)	ENSGEVG00005016382 #22	ENSGEVG00005016367	ENSGEVG00005016342	ENSGEVG00005016313	ENSGEVG00005016266	ENSGEVG00005016239	POLE4 (ENSGEVG00005016190)	ENSGEVG00005015882	ELAVL1 (ENSGEVG00005015828)	ZFR2 (ENSGEVG00005015775)	ENSGEVG00005015729	ENSGEVG00005015652	ENSGEVG00005015609	ENSGEVG00005015581	MRPL54 (ENSGEVG00005015567)	APBA3 (ENSGEVG00005015529)
Abingdon island giant tortoise	MODERN SPECIES	851															ENSCABG00000001370 #22	ENSCABG00000001331 #22	RPS28 (ENSCABG00000001324)	ENSCABG00000001322	ENSCABG00000001316	ENSCABG00000001313	ENSCABG00000001311	ST6GALNAC3 (ENSCABG00000001310)	MSH4 (ENSCABG00000001300)	RABGGTB (ENSCABG00000001291)	ACADM (ENSCABG00000000562)	SLC44A5 (ENSCABG00000000461)	LHX8 (ENSCABG00000000435)	TYW3 (ENSCABG00000000416)	CRYZ (ENSCABG00000000293)	ENSCABG00000000178	TNNI3K (ENSCABG00000000101)
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000154886.a.a.hb.b #22
Abingdon island giant tortoise	MODERN SPECIES	851																ENSCABG00000001370 #22	ENSCABG00000001331 #22	RPS28 (ENSCABG00000001324)	ENSCABG00000001322	ENSCABG00000001316	ENSCABG00000001313	ENSCABG00000001311	ST6GALNAC3 (ENSCABG00000001310)	MSH4 (ENSCABG00000001300)	RABGGTB (ENSCABG00000001291)	ACADM (ENSCABG00000000562)	SLC44A5 (ENSCABG00000000461)	LHX8 (ENSCABG00000000435)	TYW3 (ENSCABG00000000416)	CRYZ (ENSCABG00000000293)	ENSCABG00000000178
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00950000185009	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876 #21	ENSGT00940000154886.a.a.ib #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757.c #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2200			APBA1 (ENSCABG00000022472) #11	ENTREP1 (ENSCABG00000022469) #12	TJP2 (ENSCABG00000022466) #14	FXN (ENSCABG00000022464) #13	PIP5K1B (ENSCABG00000022463) #15	TMEM252 (ENSCABG00000022462) #16	PGM5 (ENSCABG00000022451) #17	ENSCABG00000022444	ENSCABG00000022441 #19	ENSCABG00000022438	ENSCABG00000022437 #21	ENSCABG00000022434 #21	ENSCABG00000022433 #22	ENSCABG00000022432 #22	DMRT1 (ENSCABG00000022413) #23	DMRT3 (ENSCABG00000022401) #24	DMRT2 (ENSCABG00000022399) #25	ENSCABG00000022392	SMARCA2 (ENSCABG00000019732) #27	VLDLR (ENSCABG00000019415) #29	KCNV2 (ENSCABG00000019411) #30	ENSCABG00000019410 #31	ENSCABG00000019407	RFX3 (ENSCABG00000019365) #35	GLIS3 (ENSCABG00000019359) #36	ENSCABG00000019358	SLC1A1 (ENSCABG00000019357)	ENSCABG00000019356
Abingdon island giant tortoise	MODERN SPECIES	2200				APBA1 (ENSCABG00000022472) #11	ENTREP1 (ENSCABG00000022469) #12	TJP2 (ENSCABG00000022466) #14	FXN (ENSCABG00000022464) #13	PIP5K1B (ENSCABG00000022463) #15	TMEM252 (ENSCABG00000022462) #16	PGM5 (ENSCABG00000022451) #17	ENSCABG00000022444	ENSCABG00000022441 #19	ENSCABG00000022438	ENSCABG00000022437 #21	ENSCABG00000022434 #21	ENSCABG00000022433 #22	ENSCABG00000022432 #22	DMRT1 (ENSCABG00000022413) #23	DMRT3 (ENSCABG00000022401) #24	DMRT2 (ENSCABG00000022399) #25	ENSCABG00000022392	SMARCA2 (ENSCABG00000019732) #27	VLDLR (ENSCABG00000019415) #29	KCNV2 (ENSCABG00000019411) #30	ENSCABG00000019410 #31	ENSCABG00000019407	RFX3 (ENSCABG00000019365) #35	GLIS3 (ENSCABG00000019359) #36	ENSCABG00000019358	SLC1A1 (ENSCABG00000019357)	ENSCABG00000019356
Goode s thornscrub tortoise	MODERN SPECIES	20	KLF9 (ENSGEVG00005014244)	ENSGEVG00005014271	MAMDC2 (ENSGEVG00005014338) #8	CFAP95 (ENSGEVG00005014451) #9	ENSGEVG00005014485	PTAR1 (ENSGEVG00005014516) #10	APBA1 (ENSGEVG00005014541) #11	ENTREP1 (ENSGEVG00005014644) #12	TJP2 (ENSGEVG00005014736) #14	FXN (ENSGEVG00005014780) #13	PIP5K1B (ENSGEVG00005014815) #15	TMEM252 (ENSGEVG00005014919) #16	PGM5 (ENSGEVG00005014982) #17	ENSGEVG00005015265 #19	DOCK8 (ENSGEVG00005015343) #21	KANK1 (ENSGEVG00005015437) #22	DMRT1 (ENSGEVG00005015585) #23	DMRT3 (ENSGEVG00005015865) #24	DMRT2 (ENSGEVG00005015890) #25	SMARCA2 (ENSGEVG00005015950) #27	KCNV2 (ENSGEVG00005016696) #30	ENSGEVG00005016771 #31	ENSGEVG00005017017	RFX3 (ENSGEVG00005017166) #35	GLIS3 (ENSGEVG00005017217) #36	ENSGEVG00005017260	SLC1A1 (ENSGEVG00005017274)	SPATA6L (ENSGEVG00005017368)	CDC37L1 (ENSGEVG00005017405)	AK3 (ENSGEVG00005017423)	RCL1 (ENSGEVG00005017434)
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
tuatara	MODERN SPECIES	1240	MAMDC2 (ENSSPUG00000007516) #8	CFAP95 (ENSSPUG00000007485) #9	ENSSPUG00000007460	ENSSPUG00000007456	ENSSPUG00000007450 #10	ENSSPUG00000007443	APBA1 (ENSSPUG00000007427) #11	ENTREP1 (ENSSPUG00000007411) #12	TJP2 (ENSSPUG00000007374) #14	FXN (ENSSPUG00000007368) #13	PIP5K1B (ENSSPUG00000007360) #15	ENSSPUG00000007227 #17	ENSSPUG00000007170 #19	ENSSPUG00000007138 #21	ENSSPUG00000007091 #21	ENSSPUG00000007055 #22	DMRT1 (ENSSPUG00000006971) #23	DMRT3 (ENSSPUG00000006937) #24	DMRT2 (ENSSPUG00000006911) #25
Episquamata	ANCESTRAL SPECIES	6	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Laterata	ANCESTRAL SPECIES	8	ENSGT00550000074816.B	ENSGT01100000266906	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000161645.a.e	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a.i #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36
Common wall lizard	MODERN SPECIES	8	SLC24A2 (ENSPMRG00000020979)	ENSPMRG00000020990	MLLT3 (ENSPMRG00000020993)	FOCAD (ENSPMRG00000021060)	HACD4 (ENSPMRG00000021384)	ENSPMRG00000021394	ENSPMRG00000021401	ENSPMRG00000021420	ENSPMRG00000021428	ENSPMRG00000021432	ENSPMRG00000021439	ENSPMRG00000021447	MTAP (ENSPMRG00000021457)	CDKN2A (ENSPMRG00000021465)	CDKN2B (ENSPMRG00000021467)	KANK1 (ENSPMRG00000021475) #22	DMRT1 (ENSPMRG00000021487) #23	DMRT3 (ENSPMRG00000021491) #24	DMRT2 (ENSPMRG00000021499) #25	SMARCA2 (ENSPMRG00000021519) #27	ENSPMRG00000021578	VLDLR (ENSPMRG00000021598) #29	ENSPMRG00000021621	KCNV2 (ENSPMRG00000021625) #30	PUM3 (ENSPMRG00000021630) #31	ENSPMRG00000021639	RFX3 (ENSPMRG00000021654) #35	GLIS3 (ENSPMRG00000021747) #36	ENSPMRG00000021781	TMEM39A (ENSPMRG00000021818)	ALG5 (ENSPMRG00000021829)
Argentine black and white tegu	MODERN SPECIES	25	MAMDC2 (ENSSMRG00000016069) #8	ENSSMRG00000016068	ENSSMRG00000016067	PTAR1 (ENSSMRG00000016066) #10	APBA1 (ENSSMRG00000016065) #11	ENTREP1 (ENSSMRG00000016063) #12	TJP2 (ENSSMRG00000016062) #14	FXN (ENSSMRG00000016061) #13	PIP5K1B (ENSSMRG00000016060) #15	TMEM252 (ENSSMRG00000016059) #16	ENSSMRG00000016058	PGM5 (ENSSMRG00000016057) #17	ENSSMRG00000016056	ENSSMRG00000016054 #19	DOCK8 (ENSSMRG00000012483) #21	KANK1 (ENSSMRG00000012463) #22	DMRT1 (ENSSMRG00000012418) #23	DMRT3 (ENSSMRG00000012413) #24	DMRT2 (ENSSMRG00000012412) #25	ENSSMRG00000012401	SMARCA2 (ENSSMRG00000012396) #27	VLDLR (ENSSMRG00000012387) #29	KCNV2 (ENSSMRG00000012381) #30	PUM3 (ENSSMRG00000012380) #31	ENSSMRG00000012379	RFX3 (ENSSMRG00000012376) #35	GLIS3 (ENSSMRG00000012362) #36	ENSSMRG00000012349	KIAA2026 (ENSSMRG00000012326)	MLANA (ENSSMRG00000012325)	ERMP1 (ENSSMRG00000012324)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Lizard	MODERN SPECIES	1	SMC5 (ENSACAG00000000931)	MAMDC2 (ENSACAG00000000946) #8	CFAP95 (ENSACAG00000001025) #9	PTAR1 (ENSACAG00000027513) #10	APBA1 (ENSACAG00000001040) #11	ENTREP1 (ENSACAG00000001191) #12	ENSACAG00000001252	FXN (ENSACAG00000043698) #13	PIP5K1B (ENSACAG00000001281) #15	TMEM252 (ENSACAG00000029180) #16	PGM5 (ENSACAG00000001410) #17	ENSACAG00000008130	ENSACAG00000001658 #19	DOCK8 (ENSACAG00000001924) #21	ENSACAG00000036574	KANK1 (ENSACAG00000002270) #22	DMRT1 (ENSACAG00000002356) #23	DMRT3 (ENSACAG00000002401) #24	DMRT2 (ENSACAG00000002411) #25	SMARCA2 (ENSACAG00000002423) #27	VLDLR (ENSACAG00000003015) #29	KCNV2 (ENSACAG00000003138) #30	PUM3 (ENSACAG00000003174) #31	ENSACAG00000003227	ENSACAG00000035469	RFX3 (ENSACAG00000003262) #35	GLIS3 (ENSACAG00000003374) #36	ENSACAG00000036408	SLC1A1 (ENSACAG00000003433)	ENSACAG00000043625	SPATA6L (ENSACAG00000029209)
Elapidae	ANCESTRAL SPECIES	7	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00950000186013	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120
Elapidae_a	ANCESTRAL SPECIES	130			ENSGT00940000161989	ENSGT01030000234515.a.b.b.c.b	ENSGT00950000183158.B.b	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000154595	ENSGT00960000193104	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.t	ENSGT00950000185125	ENSGT00940000155876.m #21	ENSGT00940000154886.a.a #22	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000164521	ENSGT00940000165063
Blue-lipped sea krait	MODERN SPECIES	5753																KANK1 (ENSLLTG00000008965) #22
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00550000074816.B	ENSGT00940000156117 #8	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b #12	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000164995	ENSGT00940000157140.b.b	ENSGT00640000091523 #19	ENSGT00950000185125	ENSGT00940000155876.m #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	23	KLF9 (ENSPTXG00000019213)	SMC5 (ENSPTXG00000019212)	MAMDC2 (ENSPTXG00000019204) #8	CFAP95 (ENSPTXG00000019203) #9	PTAR1 (ENSPTXG00000019202) #10	APBA1 (ENSPTXG00000019201) #11	ENTREP1 (ENSPTXG00000019200) #12	ENSPTXG00000018866	FXN (ENSPTXG00000018865) #13	PIP5K1B (ENSPTXG00000018864) #15	TMEM252 (ENSPTXG00000018863) #16	PGM5 (ENSPTXG00000018862) #17	ENSPTXG00000018861	ENSPTXG00000018860 #19	DOCK8 (ENSPTXG00000018810) #21	KANK1 (ENSPTXG00000018808) #22	DMRT1 (ENSPTXG00000018807) #23	DMRT3 (ENSPTXG00000018806) #24	DMRT2 (ENSPTXG00000018805) #25	SMARCA2 (ENSPTXG00000018801) #27	VLDLR (ENSPTXG00000018796) #29	KCNV2 (ENSPTXG00000018795) #30	PUM3 (ENSPTXG00000018794) #31	ENSPTXG00000018793	RFX3 (ENSPTXG00000018767) #35	GLIS3 (ENSPTXG00000018766) #36	SLC1A1 (ENSPTXG00000018764)	CDC37L1 (ENSPTXG00000018763)	AK3 (ENSPTXG00000018762)	RCL1 (ENSPTXG00000018760)	JAK2 (ENSPTXG00000018752)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	1362																ENSPTXG00000013006 #22
Eastern brown snake	MODERN SPECIES	1360																ENSPTXG00000013002 #22
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	1258																ENSPTXG00000012923 #22
Eastern brown snake	MODERN SPECIES	1257																ENSPTXG00000012922 #22
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	1	SMC5 (ENSNSUG00000017848)	ENSNSUG00000017849	MAMDC2 (ENSNSUG00000017850) #8	CFAP95 (ENSNSUG00000017851) #9	PTAR1 (ENSNSUG00000017852) #10	APBA1 (ENSNSUG00000017853) #11	ENTREP1 (ENSNSUG00000017854) #12	ENSNSUG00000017855	FXN (ENSNSUG00000018034) #13	PIP5K1B (ENSNSUG00000018035) #15	TMEM252 (ENSNSUG00000018038) #16	PGM5 (ENSNSUG00000018044) #17	ENSNSUG00000018047	ENSNSUG00000018048	DOCK8 (ENSNSUG00000018049) #21	KANK1 (ENSNSUG00000018050) #22	DMRT1 (ENSNSUG00000018051) #23	DMRT3 (ENSNSUG00000018056) #24	DMRT2 (ENSNSUG00000018057) #25	SMARCA2 (ENSNSUG00000018108) #27	VLDLR (ENSNSUG00000019901) #29	KCNV2 (ENSNSUG00000019916) #30	PUM3 (ENSNSUG00000019917) #31	ENSNSUG00000019918	RFX3 (ENSNSUG00000019919) #35	GLIS3 (ENSNSUG00000019925) #36	SLC1A1 (ENSNSUG00000019926)	SPATA6L (ENSNSUG00000019928)	CDC37L1 (ENSNSUG00000019929)	AK3 (ENSNSUG00000019930)	ENSNSUG00000019931
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	921																ENSNSUG00000006797 #22	ENSNSUG00000006796 #22	ENSNSUG00000006795
Mainland tiger snake	MODERN SPECIES	918																ENSNSUG00000006779 #22	ENSNSUG00000006777 #22	RPS28 (ENSNSUG00000006775)
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	918															ENSNSUG00000006779 #22	ENSNSUG00000006777 #22	RPS28 (ENSNSUG00000006775)
Mainland tiger snake	MODERN SPECIES	921															ENSNSUG00000006797 #22	ENSNSUG00000006796 #22	ENSNSUG00000006795
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	ENSNNAG00000017932	ENSNNAG00000017931	PTAR1 (ENSNNAG00000017929) #10	APBA1 (ENSNNAG00000017927) #11	ENTREP1 (ENSNNAG00000017925) #12	TJP2 (ENSNNAG00000017694) #14	FXN (ENSNNAG00000017581) #13	PIP5K1B (ENSNNAG00000017571) #15	TMEM252 (ENSNNAG00000017566) #16	PGM5 (ENSNNAG00000017535) #17	ENSNNAG00000017526	ENSNNAG00000017514 #19	ENSNNAG00000017496 #21	ENSNNAG00000017479 #21	ENSNNAG00000017470 #21	KANK1 (ENSNNAG00000017462) #22	DMRT1 (ENSNNAG00000017439) #23	DMRT3 (ENSNNAG00000017425) #24	DMRT2 (ENSNNAG00000017421) #25	SMARCA2 (ENSNNAG00000016662) #27	VLDLR (ENSNNAG00000016101) #29	KCNV2 (ENSNNAG00000016029) #30	ENSNNAG00000015978 #31	ENSNNAG00000015953 #31	ENSNNAG00000015896	RFX3 (ENSNNAG00000015581) #35	GLIS3 (ENSNNAG00000015518) #36	ENSNNAG00000015513	SLC1A1 (ENSNNAG00000015451)	CDC37L1 (ENSNNAG00000015380)	AK3 (ENSNNAG00000015359)
Indian cobra	MODERN SPECIES		ELAVL1 (ENSNNAG00000003038)	ENSNNAG00000003046	ENSNNAG00000003056	ENSNNAG00000003068	ENSNNAG00000003091	ENSNNAG00000003113	ENSNNAG00000003150	ENSNNAG00000003174	ENSNNAG00000003191	ENSNNAG00000003217	ENSNNAG00000003256	ENSNNAG00000003395	ENSNNAG00000003414	ENSNNAG00000003449	ENSNNAG00000003471	ENSNNAG00000000282 #22	ENSNNAG00000000289	ENSNNAG00000000322 #22	ENSNNAG00000000339	RPS28 (ENSNNAG00000000349)	NDUFA7 (ENSNNAG00000000360)	ENSNNAG00000000368	POLE4 (ENSNNAG00000000387)	ENSNNAG00000000426	ENSNNAG00000000512	ABHD8 (ENSNNAG00000000533)	ANKLE1 (ENSNNAG00000000555)	BABAM1 (ENSNNAG00000000594)	NR2F6 (ENSNNAG00000000613)	ENSNNAG00000000628	ENSNNAG00000000640
Indian cobra	MODERN SPECIES		ENSNNAG00000003056	ENSNNAG00000003068	ENSNNAG00000003091	ENSNNAG00000003113	ENSNNAG00000003150	ENSNNAG00000003174	ENSNNAG00000003191	ENSNNAG00000003217	ENSNNAG00000003256	ENSNNAG00000003395	ENSNNAG00000003414	ENSNNAG00000003449	ENSNNAG00000003471	ENSNNAG00000000282 #22	ENSNNAG00000000289	ENSNNAG00000000322 #22	ENSNNAG00000000339	RPS28 (ENSNNAG00000000349)	NDUFA7 (ENSNNAG00000000360)	ENSNNAG00000000368	POLE4 (ENSNNAG00000000387)	ENSNNAG00000000426	ENSNNAG00000000512	ABHD8 (ENSNNAG00000000533)	ANKLE1 (ENSNNAG00000000555)	BABAM1 (ENSNNAG00000000594)	NR2F6 (ENSNNAG00000000613)	ENSNNAG00000000628	ENSNNAG00000000640	KCNN1 (ENSNNAG00000000659)	CCDC124 (ENSNNAG00000000673)
Anura	ANCESTRAL SPECIES	29	ENSGT00390000014593 #9	ENSGT00390000017892 #10	ENSGT00940000156820.a.a #11	ENSGT00530000063335.B.a.b.d #12	ENSGT00940000155164	ENSGT00940000158634 #14	ENSGT00390000005811 #13	ENSGT00940000156639 #15	ENSGT00390000005250 #16	ENSGT00940000158126 #17	ENSGT00940000157140.a	ENSGT00940000163497	ENSGT00940000164556	ENSGT00640000091523 #19	ENSGT00940000155876 #21	ENSGT00940000154886.a.a #22	ENSGT00940000156489 #23	ENSGT00940000160420 #24	ENSGT00940000156282.a.a #25	ENSGT00940000154821.b #27	ENSGT00940000155460 #29	ENSGT00940000157438 #30	ENSGT00390000015757 #31	ENSGT00940000164013	ENSGT01050000244879.a.a.b #35	ENSGT00940000156896 #36	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00390000013443.d	ENSGT00940000155120	ENSGT00530000063404.a
Leishan spiny toad	MODERN SPECIES		ENTREP1 (ENSLLEG00000020161) #12	ENSLLEG00000020378	ENSLLEG00000020437	ENSLLEG00000020793 #14	FXN (ENSLLEG00000021154) #13	PIP5K1B (ENSLLEG00000021296) #15	ENSLLEG00000021785	ENSLLEG00000021820 #17	TMEM252 (ENSLLEG00000022093) #16	ENSLLEG00000022171	ENSLLEG00000022237	ENSLLEG00000022271	ENSLLEG00000022376	ENSLLEG00000022440 #19	DOCK8 (ENSLLEG00000000077) #21	KANK1 (ENSLLEG00000000147) #22	ENSLLEG00000000168	DMRT1 (ENSLLEG00000000180) #23	DMRT3 (ENSLLEG00000000195) #24	ENSLLEG00000000201	DMRT2 (ENSLLEG00000000206) #25	ENSLLEG00000000229	ENSLLEG00000000269	ENSLLEG00000000280	SMARCA2 (ENSLLEG00000000350) #27	ENSLLEG00000000580	VLDLR (ENSLLEG00000000597) #29	KCNV2 (ENSLLEG00000000652) #30	PUM3 (ENSLLEG00000000665) #31	RFX3 (ENSLLEG00000000718) #35	ENSLLEG00000000868
Frog	DUPLICATION
Frog	MODERN SPECIES		cfap95 (ENSXETG00000037188) #9	ptar1 (ENSXETG00000031102) #10	apba1 (ENSXETG00000033427) #11	fam189a2 (ENSXETG00000033309) #12	tjp2 (ENSXETG00000001683)	pip5k1b (ENSXETG00000001678) #15	ENSXETG00000001676	tmem252 (ENSXETG00000035157) #16	pgm5 (ENSXETG00000001670) #17	foxd4l1.2 (ENSXETG00000001668)	foxd4l1.1 (ENSXETG00000001667)	XB5815362 [provisional:cyp2j6] (ENSXETG00000001660)	cbwd1.1 (ENSXETG00000001666)	cbwd2 (ENSXETG00000001656) #19	dock8 (ENSXETG00000001648) #21	kank1 (ENSXETG00000002278) #22	dmrt1 (ENSXETG00000002277) #23	dmrt3 (ENSXETG00000015285) #24	dmrt2 (ENSXETG00000033983) #25	smarca2 (ENSXETG00000015299) #27	vldlr (ENSXETG00000011709) #29	kcnv2 (ENSXETG00000011708) #30	pum3 (ENSXETG00000011707) #31	carm1p1 (ENSXETG00000036672)	crygbl.2 (ENSXETG00000048659)	rfx3 (ENSXETG00000011698) #35	glis3 (ENSXETG00000011692) #36	slc1a1 (ENSXETG00000011685)	spata6l (ENSXETG00000030483)	cdc37l1 (ENSXETG00000000595)	ak3 (ENSXETG00000000588)
Frog	MODERN SPECIES		ENSXETG00000048263	slc1a6 (ENSXETG00000021879)	ranbp3 (ENSXETG00000025475)	caps (ENSXETG00000021881)	vmac (ENSXETG00000021884)	ndufa11 (ENSXETG00000021885)	med11 (ENSXETG00000045957)	nrtn (ENSXETG00000036233)	larp6-like.1 (ENSXETG00000021887)	lonp1 (ENSXETG00000021888)	rab11b.2 (ENSXETG00000021890)	marchf2 (ENSXETG00000021892)	rab11b.1 (ENSXETG00000025484)	angptl4 (ENSXETG00000021893)	ENSXETG00000046810	kank3 (ENSXETG00000021895) #22	rps28p9 (ENSXETG00000021905)	ndufa7 (ENSXETG00000037991)	ENSXETG00000045564	ENSXETG00000043243	ENSXETG00000033501 #29	ENSXETG00000021930	ENSXETG00000037311	ENSXETG00000021946	ENSXETG00000043372	ENSXETG00000048871	ENSXETG00000036450	ENSXETG00000048356	ENSXETG00000041691	ENSXETG00000043431	timm10 (ENSXETG00000027231)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	897																KANK1 (ENSLACG00000013685) #22	ENSLACG00000022162	DMRT1 (ENSLACG00000013139) #23	DMRT3 (ENSLACG00000012023) #24	DMRT2 (ENSLACG00000011510) #25	SMARCA2 (ENSLACG00000000270) #27
Coelacanth	MODERN SPECIES	274	LMNB2 (ENSLACG00000015242)	TMPRSS9 (ENSLACG00000015402)	SPPL2B (ENSLACG00000015569)	LSM7 (ENSLACG00000015700)	ENSLACG00000015723	ENSLACG00000015739	FBN3 (ENSLACG00000016154)	ENSLACG00000016511	TIMM44 (ENSLACG00000016754)	HNRNPM (ENSLACG00000016814)	rab11bb (ENSLACG00000016857)	MARCHF2 (ENSLACG00000022426)	RAB11B (ENSLACG00000016974)	ANGPTL4 (ENSLACG00000017018)	ENSLACG00000017186	kank3 (ENSLACG00000017209) #22	NDUFA7 (ENSLACG00000017258)	ENSLACG00000017294	ENSLACG00000017317	ENSLACG00000017420	admp (ENSLACG00000017430)	pnhd (ENSLACG00000017449)	POLE4 (ENSLACG00000017480)	ENSLACG00000017484	tspan37 (ENSLACG00000017588)	ELAVL1 (ENSLACG00000017607)	slc1a8b (ENSLACG00000017647)	ENSLACG00000017673	ENSLACG00000017745	ENSLACG00000017800	CTNS (ENSLACG00000017816)