Glires ANCESTRAL SPECIES 9 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Rodentia ANCESTRAL SPECIES 9 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Rodentia_A ANCESTRAL SPECIES 11 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Sciuridae ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00900000143153 #37 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Marmotini ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00900000143153 #37 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Alpin marmot MODERN SPECIES 32 PTAR1 (ENSMMMG00000011070) #7 APBA1 (ENSMMMG00000011033) #8 ENSMMMG00000011022 #9 TJP2 (ENSMMMG00000003727) #10 ENSMMMG00000003616 #11 FXN (ENSMMMG00000003605) #12 PIP5K1B (ENSMMMG00000003495) #13 PABIR1 (ENSMMMG00000003490) #14 TMEM252 (ENSMMMG00000003476) #15 PGM5 (ENSMMMG00000003460) #16 ENSMMMG00000003446 #17 ENSMMMG00000003411 #18 DOCK8 (ENSMMMG00000003328) #19 ENSMMMG00000003304 #20 ENSMMMG00000003301 #21 KANK1 (ENSMMMG00000003281) #22 DMRT1 (ENSMMMG00000003270) #23 DMRT3 (ENSMMMG00000003239) #24 DMRT2 (ENSMMMG00000003238) #25 ENSMMMG00000003212 #26 SMARCA2 (ENSMMMG00000002811) #27 ENSMMMG00000002785 #28 ENSMMMG00000002765 #29 VLDLR (ENSMMMG00000002594) #30 ENSMMMG00000002572 #31 KCNV2 (ENSMMMG00000002550) #32 PUM3 (ENSMMMG00000002513) #33 ENSMMMG00000002504 #34 GLIS3 (ENSMMMG00000002430) #35 ENSMMMG00000002416 #36 ENSMMMG00000002405 #37 Marmotini_b ANCESTRAL SPECIES 88 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00900000143153 #37 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Arctic ground squirrel MODERN SPECIES 568 ENSUPAG00010016844 ##20 KANK1 (ENSUPAG00010016810) #22 DMRT1 (ENSUPAG00010016791) #23 DMRT3 (ENSUPAG00010016785) #24 CYP51A1 (ENSUPAG00010016765) LRRD1 (ENSUPAG00010016745) KRIT1 (ENSUPAG00010016644) ANKIB1 (ENSUPAG00010016604) ENSUPAG00010016589 GATAD1 (ENSUPAG00010016577) PEX1 (ENSUPAG00010016509) RBM48 (ENSUPAG00010016502) ENSUPAG00010016496 Squirrel MODERN SPECIES 103 CFAP95 (ENSSTOG00000012360) PTAR1 (ENSSTOG00000012685) #7 APBA1 (ENSSTOG00000012678) #8 ENTREP1 (ENSSTOG00000012667) #9 TJP2 (ENSSTOG00000011181) #10 ENSSTOG00000033140 #12 PIP5K1B (ENSSTOG00000023540) #13 PABIR1 (ENSSTOG00000022211) #14 TMEM252 (ENSSTOG00000008860) #15 PGM5 (ENSSTOG00000008834) #16 ENSSTOG00000029964 #17 ENSSTOG00000028764 #18 ENSSTOG00000031824 DOCK8 (ENSSTOG00000016411) #19 ENSSTOG00000030036 ##20 KANK1 (ENSSTOG00000010218) #22 DMRT1 (ENSSTOG00000010235) #23 DMRT3 (ENSSTOG00000023574) #24 DMRT2 (ENSSTOG00000026909) #25 SMARCA2 (ENSSTOG00000006812) #27 ENSSTOG00000031987 #29 VLDLR (ENSSTOG00000006880) #30 KCNV2 (ENSSTOG00000020003) #32 PUM3 (ENSSTOG00000009586) #33 RFX3 (ENSSTOG00000006974) GLIS3 (ENSSTOG00000000302) #35 ENSSTOG00000031708 #37 SLC1A1 (ENSSTOG00000023583) PLPP6 (ENSSTOG00000025831) SPATA6L (ENSSTOG00000000018) CDC37L1 (ENSSTOG00000000020) Eurasian red squirrel MODERN SPECIES 6 MAMDC2 (ENSSVLG00005021856) CFAP95 (ENSSVLG00005021956) PTAR1 (ENSSVLG00005022066) #7 APBA1 (ENSSVLG00005022160) #8 ENTREP1 (ENSSVLG00005022461) #9 TJP2 (ENSSVLG00005022528) #10 ENSSVLG00005022798 #12 PIP5K1B (ENSSVLG00005022876) #13 PABIR1 (ENSSVLG00005023031) #14 TMEM252 (ENSSVLG00005023049) #15 PGM5 (ENSSVLG00005023081) #16 ENSSVLG00005023212 #17 ENSSVLG00005023230 #18 ENSSVLG00005023280 DOCK8 (ENSSVLG00005023344) #19 KANK1 (ENSSVLG00005023807) #22 DMRT1 (ENSSVLG00005023845) #23 DMRT3 (ENSSVLG00005023888) #24 DMRT2 (ENSSVLG00005023918) #25 SMARCA2 (ENSSVLG00005024009) #27 ENSSVLG00005024201 #29 VLDLR (ENSSVLG00005024232) #30 KCNV2 (ENSSVLG00005024318) #32 PUM3 (ENSSVLG00005024338) #33 ENSSVLG00005024401 RFX3 (ENSSVLG00005024420) GLIS3 (ENSSVLG00005024543) #35 SLC1A1 (ENSSVLG00005024569) SPATA6L (ENSSVLG00005024615) PLPP6 (ENSSVLG00005024689) CDC37L1 (ENSSVLG00005024699) Hystricomorpha ANCESTRAL SPECIES 46 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Hystricomorpha_a ANCESTRAL SPECIES 53 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b.d #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00900000143153 #37 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Hystricomorpha_b ANCESTRAL SPECIES 71 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b.d #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Long-tailed chinchilla MODERN SPECIES 141 SMC5 (ENSCLAG00000005780) MAMDC2 (ENSCLAG00000004597) ENSCLAG00000005394 CFAP95 (ENSCLAG00000007041) PTAR1 (ENSCLAG00000008830) #7 APBA1 (ENSCLAG00000006043) #8 ENTREP1 (ENSCLAG00000007506) #9 TJP2 (ENSCLAG00000012841) #10 FXN (ENSCLAG00000009225) #12 PIP5K1B (ENSCLAG00000011292) #13 TMEM252 (ENSCLAG00000005523) #15 PGM5 (ENSCLAG00000005854) #16 ENSCLAG00000006762 #17 ENSCLAG00000005076 #18 DOCK8 (ENSCLAG00000005204) #19 KANK1 (ENSCLAG00000015509) #22 DMRT1 (ENSCLAG00000015238) #23 DMRT3 (ENSCLAG00000015537) #24 DMRT2 (ENSCLAG00000006168) #25 SMARCA2 (ENSCLAG00000014484) #27 VLDLR (ENSCLAG00000007543) #30 KCNV2 (ENSCLAG00000013226) #32 PUM3 (ENSCLAG00000011892) #33 RFX3 (ENSCLAG00000009044) GLIS3 (ENSCLAG00000008116) #35 ENSCLAG00000009238 SLC1A1 (ENSCLAG00000009832) ENSCLAG00000009476 #37 SPATA6L (ENSCLAG00000010497) PLPP6 (ENSCLAG00000017735) CDC37L1 (ENSCLAG00000005805) Degu MODERN SPECIES 128 ENSODEG00000019033 APBA1 (ENSODEG00000004217) #8 ENTREP1 (ENSODEG00000004348) #9 TJP2 (ENSODEG00000004420) #10 FXN (ENSODEG00000003413) #12 PIP5K1B (ENSODEG00000003585) #13 ENSODEG00000003739 PABIR1 (ENSODEG00000019013) #14 TMEM252 (ENSODEG00000003841) #15 PGM5 (ENSODEG00000003917) #16 ENSODEG00000003983 #18 ENSODEG00000004467 #19 ENSODEG00000004602 #19 ENSODEG00000004711 #19 ENSODEG00000004719 KANK1 (ENSODEG00000004766) #22 DMRT1 (ENSODEG00000004898) #23 DMRT3 (ENSODEG00000004984) #24 DMRT2 (ENSODEG00000004992) #25 SMARCA2 (ENSODEG00000005452) #27 ENSODEG00000006378 #29 ENSODEG00000003492 #30 KCNV2 (ENSODEG00000003536) #32 ENSODEG00000003625 #33 RFX3 (ENSODEG00000003682) GLIS3 (ENSODEG00000003731) #35 SLC1A1 (ENSODEG00000003884) ENSODEG00000003949 #37 SPATA6L (ENSODEG00000004066) PLPP6 (ENSODEG00000019026) CDC37L1 (ENSODEG00000004185) Guinea pig MODERN SPECIES 21 KLF9 (ENSCPOG00000031222) SMC5 (ENSCPOG00000000198) MAMDC2 (ENSCPOG00000002432) CFAP95 (ENSCPOG00000006639) PTAR1 (ENSCPOG00000008368) #7 APBA1 (ENSCPOG00000032780) #8 ENTREP1 (ENSCPOG00000003236) #9 TJP2 (ENSCPOG00000021062) #10 FXN (ENSCPOG00000004293) #12 PIP5K1B (ENSCPOG00000004288) #13 PABIR1 (ENSCPOG00000003280) #14 TMEM252 (ENSCPOG00000013771) #15 PGM5 (ENSCPOG00000015031) #16 ENSCPOG00000019718 #18 DOCK8 (ENSCPOG00000008366) #19 KANK1 (ENSCPOG00000008389) #22 DMRT1 (ENSCPOG00000005909) #23 DMRT3 (ENSCPOG00000005912) #24 DMRT2 (ENSCPOG00000008452) #25 SMARCA2 (ENSCPOG00000005475) #27 VLDLR (ENSCPOG00000007685) #30 KCNV2 (ENSCPOG00000032893) #32 ENSCPOG00000008552 #33 RFX3 (ENSCPOG00000000900) GLIS3 (ENSCPOG00000005523) #35 ENSCPOG00000030794 #37 SLC1A1 (ENSCPOG00000011151) PLPP6 (ENSCPOG00000012931) SPATA6L (ENSCPOG00000012925) CDC37L1 (ENSCPOG00000030938) AK3 (ENSCPOG00000011927) Naked mole-rat female MODERN SPECIES 3 ENSHGLG00000031959 TJP2 (ENSHGLG00000015590) #10 FXN (ENSHGLG00000013859) #12 PIP5K1B (ENSHGLG00000015519) #13 PABIR1 (ENSHGLG00000021429) #14 ENSHGLG00000045896 ENSHGLG00000040794 TMEM252 (ENSHGLG00000033131) #15 PGM5 (ENSHGLG00000013086) #16 ENSHGLG00000046909 #17 CBWD3 (ENSHGLG00000015962) #18 ENSHGLG00000020779 DOCK8 (ENSHGLG00000016578) #19 ENSHGLG00000050403 ENSHGLG00000045832 KANK1 (ENSHGLG00000012000) #22 DMRT1 (ENSHGLG00000043033) #23 DMRT3 (ENSHGLG00000012858) #24 ENSHGLG00000033430 #25 ENSHGLG00000036415 ENSHGLG00000035319 ENSHGLG00000013697 ENSHGLG00000005215 #27 ENSHGLG00000035043 ENSHGLG00000016566 VLDLR (ENSHGLG00000016113) #30 KCNV2 (ENSHGLG00000015810) #32 ENSHGLG00000015868 #33 ENSHGLG00000016314 ENSHGLG00000042585 ENSHGLG00000019207 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Kangaroo rat MODERN SPECIES 359 Trpm3 (ENSDORG00000009972) Klf9 (ENSDORG00000029268) Smc5 (ENSDORG00000009689) Mamdc2 (ENSDORG00000000884) Ptar1 (ENSDORG00000005855) #7 Apba1 (ENSDORG00000003149) #8 Entrep1 (ENSDORG00000001566) #9 Tjp2 (ENSDORG00000009039) #10 Fxn (ENSDORG00000027975) #12 Pip5k1b (ENSDORG00000001153) #13 Fam122a (ENSDORG00000001152) #14 Tmem252 (ENSDORG00000005477) #15 Pgm5 (ENSDORG00000005476) #16 Cbwd1 (ENSDORG00000004917) #18 Dock8 (ENSDORG00000007203) #19 Kank1 (ENSDORG00000015159) #22 ENSDORG00000006363 #23 Dmrt2 (ENSDORG00000007216) #25 Smarca2 (ENSDORG00000014832) #27 Vldlr (ENSDORG00000012954) #30 Kcnv2 (ENSDORG00000011511) #32 ENSDORG00000003628 #33 Rfx3 (ENSDORG00000013906) ENSDORG00000025494 #35 Slc1a1 (ENSDORG00000010091) Plpp6 (ENSDORG00000003071) Cdc37l1 (ENSDORG00000023648) Ak3 (ENSDORG00000010355) Rcl1 (ENSDORG00000015645) Jak2 (ENSDORG00000011552) ENSDORG00000000109 Myomorpha ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Lesser Egyptian jerboa MODERN SPECIES 50 Mamdc2 (ENSJJAG00000010569) Cfap95 (ENSJJAG00000021419) Ptar1 (ENSJJAG00000017996) #7 Apba1 (ENSJJAG00000021335) #8 Entrep1 (ENSJJAG00000021132) #9 Tjp2 (ENSJJAG00000003581) #10 Fxn (ENSJJAG00000022666) #12 Pip5k1b (ENSJJAG00000018154) #13 Fam122a (ENSJJAG00000009421) #14 Tmem252 (ENSJJAG00000015659) #15 Pgm5 (ENSJJAG00000022690) #16 ENSJJAG00000013817 #18 ENSJJAG00000009646 #19 ENSJJAG00000017231 #19 ENSJJAG00000015498 #19 Kank1 (ENSJJAG00000018774) #22 Dmrt1 (ENSJJAG00000016690) #23 Dmrt3 (ENSJJAG00000022573) #24 Dmrt2 (ENSJJAG00000023959) #25 ENSJJAG00000010719 Smarca2 (ENSJJAG00000010867) #27 Vldlr (ENSJJAG00000016440) #30 ENSJJAG00000000409 #29 Kcnv2 (ENSJJAG00000016782) #32 Pum3 (ENSJJAG00000012563) #33 ENSJJAG00000010263 Rfx3 (ENSJJAG00000010280) ENSJJAG00000024335 Glis3 (ENSJJAG00000011399) #35 Slc1a1 (ENSJJAG00000018507) ENSJJAG00000020462 #37 Muroidea ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Muroidea_A ANCESTRAL SPECIES ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Cricetidae ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Cricetinae ANCESTRAL SPECIES 2 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Chinese hamster chok1gshd MODERN SPECIES 401 Mamdc2 (ENSCGRG00001023333) Cfap95 (ENSCGRG00001000720) Ptar1 (ENSCGRG00001004346) #7 Apba1 (ENSCGRG00001017033) #8 Entrep1 (ENSCGRG00001002309) #9 Tjp2 (ENSCGRG00001022408) #10 Fxn (ENSCGRG00001003906) #12 ENSCGRG00001013409 Pip5k1b (ENSCGRG00001017408) #13 Fam122a (ENSCGRG00001012685) #14 Tmem252 (ENSCGRG00001019081) #15 Pgm5 (ENSCGRG00001020037) #16 Foxd4 (ENSCGRG00001006276) #17 Cbwd1 (ENSCGRG00001020851) #18 Dock8 (ENSCGRG00001013079) #19 Kank1 (ENSCGRG00001020355) #22 Dmrt1 (ENSCGRG00001000625) #23 Dmrt3 (ENSCGRG00001005036) #24 Dmrt2 (ENSCGRG00001007562) #25 Smarca2 (ENSCGRG00001002323) #27 Vldlr (ENSCGRG00001014399) #30 ENSCGRG00001017895 #29 Kcnv2 (ENSCGRG00001018140) #32 Pum3 (ENSCGRG00001016402) #33 Rfx3 (ENSCGRG00001021745) Glis3 (ENSCGRG00001014233) #35 Slc1a1 (ENSCGRG00001022336) ENSCGRG00001023585 #37 Spata6l (ENSCGRG00001002881) Plpp6 (ENSCGRG00001012981) Cdc37l1 (ENSCGRG00001000264) Golden Hamster MODERN SPECIES 617 Smc5 (ENSMAUG00000010150) Mamdc2 (ENSMAUG00000011315) Cfap95 (ENSMAUG00000009592) Ptar1 (ENSMAUG00000008946) #7 Apba1 (ENSMAUG00000009290) #8 Entrep1 (ENSMAUG00000010196) #9 Tjp2 (ENSMAUG00000008987) #10 Fxn (ENSMAUG00000009158) #12 Pip5k1b (ENSMAUG00000010912) #13 Fam122a (ENSMAUG00000002386) #14 Tmem252 (ENSMAUG00000008962) #15 Pgm5 (ENSMAUG00000009185) #16 Cbwd1 (ENSMAUG00000009107) #18 ENSMAUG00000009538 #19 ENSMAUG00000009191 #19 Kank1 (ENSMAUG00000009263) #22 ENSMAUG00000008975 #23 Dmrt3 (ENSMAUG00000008904) #24 Dmrt2 (ENSMAUG00000010038) #25 ENSMAUG00000010070 #27 ENSMAUG00000008807 #27 ENSMAUG00000008613 #27 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) #32 Pum3 (ENSMAUG00000009733) #33 Rfx3 (ENSMAUG00000009987) Slc1a1 (ENSMAUG00000009046) Plpp6 (ENSMAUG00000001915) Spata6l (ENSMAUG00000010530) Cdc37l1 (ENSMAUG00000008847) Ak3 (ENSMAUG00000008253) Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00940000160905 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Prairie vole MODERN SPECIES 16 Smc5 (ENSMOCG00000013931) Mamdc2 (ENSMOCG00000010608) Cfap95 (ENSMOCG00000018700) Ptar1 (ENSMOCG00000021324) #7 Apba1 (ENSMOCG00000009892) #8 Entrep1 (ENSMOCG00000018310) #9 Tjp2 (ENSMOCG00000012468) #10 Fxn (ENSMOCG00000014625) #12 Pip5k1b (ENSMOCG00000017594) #13 ENSMOCG00000010285 Fam122a (ENSMOCG00000001051) #14 Tmem252 (ENSMOCG00000017938) #15 Pgm5 (ENSMOCG00000011710) #16 Cbwd1 (ENSMOCG00000015974) #18 Dock8 (ENSMOCG00000014249) #19 Kank1 (ENSMOCG00000020725) #22 ENSMOCG00000017971 #23 Dmrt3 (ENSMOCG00000015270) #24 Dmrt2 (ENSMOCG00000016701) #25 Smarca2 (ENSMOCG00000001611) #27 Vldlr (ENSMOCG00000004269) #30 Kcnv2 (ENSMOCG00000014872) #32 ENSMOCG00000019519 #33 Rfx3 (ENSMOCG00000018931) Glis3 (ENSMOCG00000009953) #35 Slc1a1 (ENSMOCG00000017507) ENSMOCG00000018225 #37 Spata6l (ENSMOCG00000022082) Plpp6 (ENSMOCG00000001135) Cdc37l1 (ENSMOCG00000018341) Ak3 (ENSMOCG00000010856) Northern American deer mouse MODERN SPECIES Smc5 (ENSPEMG00000010351) ENSPEMG00000011160 ENSPEMG00000021172 Cfap95 (ENSPEMG00000021140) Ptar1 (ENSPEMG00000018036) #7 Apba1 (ENSPEMG00000010980) #8 Entrep1 (ENSPEMG00000020060) #9 Tjp2 (ENSPEMG00000020250) #10 ENSPEMG00000019884 #12 Pip5k1b (ENSPEMG00000020095) #13 Fam122a (ENSPEMG00000012823) #14 Tmem252 (ENSPEMG00000007137) #15 Pgm5 (ENSPEMG00000020205) #16 Cbwd1 (ENSPEMG00000000396) #18 Dock8 (ENSPEMG00000014001) #19 Kank1 (ENSPEMG00000013916) #22 Dmrt1 (ENSPEMG00000019943) #23 Dmrt3 (ENSPEMG00000019990) #24 Dmrt2 (ENSPEMG00000019767) #25 Smarca2 (ENSPEMG00000019821) #27 ENSPEMG00000021666 #29 Vldlr (ENSPEMG00000022250) #30 Kcnv2 (ENSPEMG00000020138) #32 ENSPEMG00000030423 ENSPEMG00000019340 #33 Rfx3 (ENSPEMG00000019731) Glis3 (ENSPEMG00000020002) #35 ENSPEMG00000004286 Slc1a1 (ENSPEMG00000009611) ENSPEMG00000021571 #37 Spata6l (ENSPEMG00000023122) Murinae ANCESTRAL SPECIES ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00520000061590 #29 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Mus ANCESTRAL SPECIES ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00900000143396 ENSGT00940000155460 #30 ENSGT00520000061590 #29 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 Mus_A ANCESTRAL SPECIES 16 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00860000136305 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00900000143396 ENSGT00940000155460 #30 ENSGT00520000061590 #29 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 Mus_B ANCESTRAL SPECIES 16 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00860000136305 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00900000143396 ENSGT00940000155460 #30 ENSGT00520000061590 #29 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 Mus_C ANCESTRAL SPECIES 24 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00860000136305 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000154821.b #27 ENSGT00900000143396 ENSGT00940000155460 #30 ENSGT00520000061590 #29 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT01050000244879.a.a.b ENSGT00940000156896 #35 ENSGT00940000155397.b ENSGT00900000143153 #37 ENSGT00530000063821.b.b ENSGT00940000160907 Steppe mouse MODERN SPECIES 3345 Cfap95 (ENSMSIG00000011339) Ptar1 (ENSMSIG00000011314) #7 Apba1 (ENSMSIG00000011254) #8 ENSMSIG00000011248 Entrep1 (ENSMSIG00000011206) #9 Tjp2 (ENSMSIG00000010954) #10 Fxn (ENSMSIG00000010910) #12 ENSMSIG00000010906 Pip5k1b (ENSMSIG00000010797) #13 Fam122a (ENSMSIG00000010786) #14 Tmem252 (ENSMSIG00000010774) #15 Pgm5 (ENSMSIG00000010743) #16 Foxd4 (ENSMSIG00000010736) #17 Cbwd1 (ENSMSIG00000010701) #18 Dock8 (ENSMSIG00000010534) #19 Kank1 (ENSMSIG00000010404) #22 Dmrt1 (ENSMSIG00000010363) #23 Dmrt3 (ENSMSIG00000010354) #24 Dmrt2 (ENSMSIG00000010341) #25 spretus MODERN SPECIES 10 Mamdc2 (MGP_SPRETEiJ_G0023741) Cfap95 (MGP_SPRETEiJ_G0023742) Ptar1 (MGP_SPRETEiJ_G0023743) #7 MGP_SPRETEiJ_G0023744 Apba1 (MGP_SPRETEiJ_G0023745) #8 Entrep1 (MGP_SPRETEiJ_G0023746) #9 Tjp2 (MGP_SPRETEiJ_G0023747) #10 Fxn (MGP_SPRETEiJ_G0023748) #12 Pip5k1b (MGP_SPRETEiJ_G0023749) #13 Fam122a (MGP_SPRETEiJ_G0023750) #14 Tmem252 (MGP_SPRETEiJ_G0023751) #15 Pgm5 (MGP_SPRETEiJ_G0023752) #16 Foxd4 (MGP_SPRETEiJ_G0023753) #17 Cbwd1 (MGP_SPRETEiJ_G0023754) #18 Dock8 (MGP_SPRETEiJ_G0023755) #19 Kank1 (MGP_SPRETEiJ_G0023756) #22 Dmrt3 (MGP_SPRETEiJ_G0023757) #24 Dmrt2 (MGP_SPRETEiJ_G0023758) #25 Smarca2 (MGP_SPRETEiJ_G0023759) #27 MGP_SPRETEiJ_G0023760 Vldlr (MGP_SPRETEiJ_G0023761) #30 Kcnv2 (MGP_SPRETEiJ_G0023762) #32 Pum3 (MGP_SPRETEiJ_G0023763) #33 Rfx3 (MGP_SPRETEiJ_G0023764) Glis3 (MGP_SPRETEiJ_G0023765) #35 Slc1a1 (MGP_SPRETEiJ_G0023766) Spata6l (MGP_SPRETEiJ_G0023767) Plpp6 (MGP_SPRETEiJ_G0023768) Cdc37l1 (MGP_SPRETEiJ_G0023769) Ak3 (MGP_SPRETEiJ_G0023770) Rcl1 (MGP_SPRETEiJ_G0023771) Mouse MODERN SPECIES 10 Mamdc2 (ENSMUSG00000033207) Cfap95 (ENSMUSG00000033053) Ptar1 (ENSMUSG00000074925) #7 Apba1 (ENSMUSG00000024897) #8 Entrep1 (ENSMUSG00000071604) #9 Tjp2 (ENSMUSG00000024812) #10 Fxn (ENSMUSG00000059363) #12 Pip5k1b (ENSMUSG00000024867) #13 Fam122a (ENSMUSG00000074922) #14 Tmem252 (ENSMUSG00000048572) #15 Pgm5 (ENSMUSG00000041731) #16 Gm10053 (ENSMUSG00000058927) Foxd4 (ENSMUSG00000051490) #17 Cbwd1 (ENSMUSG00000024878) #18 Dock8 (ENSMUSG00000052085) #19 Kank1 (ENSMUSG00000032702) #22 Dmrt1 (ENSMUSG00000024837) #23 Dmrt3 (ENSMUSG00000042372) #24 Dmrt2 (ENSMUSG00000048138) #25 Smarca2 (ENSMUSG00000024921) #27 Gm815 (ENSMUSG00000074913) Vldlr (ENSMUSG00000024924) #30 Kcnv2 (ENSMUSG00000047298) #32 Pum3 (ENSMUSG00000041360) #33 Rfx3 (ENSMUSG00000040929) Glis3 (ENSMUSG00000052942) #35 Slc1a1 (ENSMUSG00000024935) Spata6l (ENSMUSG00000064202) Plpp6 (ENSMUSG00000040105) Cdc37l1 (ENSMUSG00000024780) Ak3 (ENSMUSG00000024782) Ryukyu mouse MODERN SPECIES 10 Mamdc2 (MGP_CAROLIEiJ_G0022822) Cfap95 (MGP_CAROLIEiJ_G0022823) Ptar1 (MGP_CAROLIEiJ_G0022824) #7 MGP_CAROLIEiJ_G0022825 Apba1 (MGP_CAROLIEiJ_G0022826) #8 Entrep1 (MGP_CAROLIEiJ_G0022827) #9 Tjp2 (MGP_CAROLIEiJ_G0022828) #10 Fxn (MGP_CAROLIEiJ_G0022829) #12 Pip5k1b (MGP_CAROLIEiJ_G0022830) #13 Fam122a (MGP_CAROLIEiJ_G0022831) #14 Tmem252 (MGP_CAROLIEiJ_G0022832) #15 Pgm5 (MGP_CAROLIEiJ_G0022833) #16 Foxd4 (MGP_CAROLIEiJ_G0022834) #17 Cbwd1 (MGP_CAROLIEiJ_G0022835) #18 Dock8 (MGP_CAROLIEiJ_G0022836) #19 Kank1 (MGP_CAROLIEiJ_G0022837) #22 Dmrt1 (MGP_CAROLIEiJ_G0022838) #23 Dmrt3 (MGP_CAROLIEiJ_G0022839) #24 Dmrt2 (MGP_CAROLIEiJ_G0022840) #25 Smarca2 (MGP_CAROLIEiJ_G0022841) #27 MGP_CAROLIEiJ_G0022842 Vldlr (MGP_CAROLIEiJ_G0022843) #30 Kcnv2 (MGP_CAROLIEiJ_G0022844) #32 Pum3 (MGP_CAROLIEiJ_G0022845) #33 Rfx3 (MGP_CAROLIEiJ_G0022846) Glis3 (MGP_CAROLIEiJ_G0022847) #35 Slc1a1 (MGP_CAROLIEiJ_G0022848) Spata6l (MGP_CAROLIEiJ_G0022849) Plpp6 (MGP_CAROLIEiJ_G0022850) Cdc37l1 (MGP_CAROLIEiJ_G0022851) Ak3 (MGP_CAROLIEiJ_G0022852) Shrew mouse MODERN SPECIES Klf9 (MGP_PahariEiJ_G0014314) Smc5 (MGP_PahariEiJ_G0014315) Mamdc2 (MGP_PahariEiJ_G0014316) Cfap95 (MGP_PahariEiJ_G0014317) Ptar1 (MGP_PahariEiJ_G0014318) #7 Apba1 (MGP_PahariEiJ_G0014319) #8 Entrep1 (MGP_PahariEiJ_G0014320) #9 Tjp2 (MGP_PahariEiJ_G0014321) #10 MGP_PahariEiJ_G0014322 #12 Fam122a (MGP_PahariEiJ_G0014324) #14 Tmem252 (MGP_PahariEiJ_G0014325) #15 Pgm5 (MGP_PahariEiJ_G0014326) #16 Foxd4 (MGP_PahariEiJ_G0014327) #17 Cbwd1 (MGP_PahariEiJ_G0014328) #18 Dock8 (MGP_PahariEiJ_G0014329) #19 Kank1 (MGP_PahariEiJ_G0014330) #22 Dmrt1 (MGP_PahariEiJ_G0014331) #23 Dmrt3 (MGP_PahariEiJ_G0014332) #24 Dmrt2 (MGP_PahariEiJ_G0014333) #25 Smarca2 (MGP_PahariEiJ_G0014334) #27 MGP_PahariEiJ_G0014335 Vldlr (MGP_PahariEiJ_G0014336) #30 Kcnv2 (MGP_PahariEiJ_G0014337) #32 Pum3 (MGP_PahariEiJ_G0014338) #33 Rfx3 (MGP_PahariEiJ_G0014339) Glis3 (MGP_PahariEiJ_G0014340) #35 Slc1a1 (MGP_PahariEiJ_G0014341) Spata6l (MGP_PahariEiJ_G0014342) Plpp6 (MGP_PahariEiJ_G0014343) Cdc37l1 (MGP_PahariEiJ_G0014344) Ak3 (MGP_PahariEiJ_G0014345) Rat MODERN SPECIES Mamdc2 (ENSRNOG00000024620) Cfap95 (ENSRNOG00000036615) Ptar1 (ENSRNOG00000014891) #7 Apba1 (ENSRNOG00000014928) #8 Entrep1 (ENSRNOG00000061147) #9 Tjp2 (ENSRNOG00000015030) #10 Fxn (ENSRNOG00000015213) #12 Pip5k1b (ENSRNOG00000015232) #13 Pabir1 (ENSRNOG00000051051) #14 Tmem252 (ENSRNOG00000025476) #15 Pgm5 (ENSRNOG00000015406) #16 Foxd4 (ENSRNOG00000050486) #17 Zng1a (ENSRNOG00000015516) #18 Dock8 (ENSRNOG00000015894) #19 Hmgb1-ps4 (ENSRNOG00000065098) Kank1 (ENSRNOG00000016023) #22 Dmrt1 (ENSRNOG00000016075) #23 Dmrt3 (ENSRNOG00000016284) #24 Dmrt2 (ENSRNOG00000016301) #25 ENSRNOG00000062555 Smarca2 (ENSRNOG00000011931) #27 ENSRNOG00000069446 #29 Vldlr (ENSRNOG00000027491) #30 ENSRNOG00000062591 Kcnv2 (ENSRNOG00000012566) #32 Pum3 (ENSRNOG00000012574) #33 Rfx3 (ENSRNOG00000014486) ENSRNOG00000066761 Glis3 (ENSRNOG00000014768) #35 Slc1a1 (ENSRNOG00000014816) ENSRNOG00000065811 #37 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1026 ENSNGAG00000019946 #22 ENSNGAG00000009667 Upper Galilee mountains blind mole rat MODERN SPECIES 994 ENSNGAG00000016775 ENSNGAG00000001837 #22 ENSNGAG00000005862 ENSNGAG00000012874 ENSNGAG00000014855 ENSNGAG00000000860 Rorb (ENSNGAG00000007086) Trpm6 (ENSNGAG00000005371) D030056L22Rik (ENSNGAG00000015165) Carnmt1 (ENSNGAG00000013885) Nmrk1 (ENSNGAG00000019838) Ostf1 (ENSNGAG00000020920) Lagomorpha ANCESTRAL SPECIES 77 ENSGT01100000263667 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 #7 ENSGT00940000156820.a.a #8 ENSGT00530000063335.B.a.b #9 ENSGT00940000158634 #10 ENSGT00390000005811 #12 ENSGT00940000156639 #13 ENSGT00390000015476.d.b #14 ENSGT00390000005250 #15 ENSGT00940000158126 #16 ENSGT00940000163353 #17 ENSGT00640000091523 #18 ENSGT00940000155876 #19 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a #25 ENSGT00940000155460 #30 ENSGT00940000157438 #32 ENSGT00390000015757 #33 ENSGT00940000164013 Rabbit MODERN SPECIES ENSOCUG00000021364 MAMDC2 (ENSOCUG00000000271) CFAP95 (ENSOCUG00000008788) PTAR1 (ENSOCUG00000012575) #7 ENSOCUG00000013515 #8 ENTREP1 (ENSOCUG00000013503) #9 TJP2 (ENSOCUG00000013019) #10 FXN (ENSOCUG00000015076) #12 PIP5K1B (ENSOCUG00000015811) #13 PABIR1 (ENSOCUG00000002637) #14 ENSOCUG00000014142 #15 PGM5 (ENSOCUG00000014125) #16 ENSOCUG00000010467 #17 ENSOCUG00000000733 #18 DOCK8 (ENSOCUG00000003208) #19 KANK1 (ENSOCUG00000004753) #22 ENSOCUG00000036685 DMRT3 (ENSOCUG00000004582) #24 ENSOCUG00000027863 DMRT2 (ENSOCUG00000003299) #25 ENSOCUG00000037388 ENSOCUG00000034834 ENSOCUG00000023438 ENSOCUG00000035677 ENSOCUG00000000241 SMARCA2 (ENSOCUG00000006320) #27 ENSOCUG00000022775 VLDLR (ENSOCUG00000002231) #30 KCNV2 (ENSOCUG00000004385) #32 ENSOCUG00000004189 #33 ENSOCUG00000039572 Pika MODERN SPECIES 352 ENSOPRG00000005395 #22