Euteleostomi ANCESTRAL SPECIES 654 ENSGT00940000159478 ENSGT00940000154886.a.a #22 ENSGT00910000144227 ENSGT00390000006553 ENSGT00940000165170 Sarcopterygii ANCESTRAL SPECIES 22 ENSGT00390000014000 ENSGT00940000159993 ENSGT00940000158753 ENSGT00510000047872 ENSGT00940000163715.b ENSGT01030000234515.a.b.b ENSGT00950000183158.B.b ENSGT00950000183158.B.a.a ENSGT00940000154412.C ENSGT00390000000051 ENSGT00940000154595 ENSGT00940000163126 ENSGT00940000158995 ENSGT00940000161659 ENSGT00940000159478 ENSGT00940000154886.a.a #22 ENSGT00910000144227 ENSGT00390000006553 ENSGT00990000211583 ENSGT00940000155528 ENSGT00940000164644 ENSGT00530000063460.B ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b ENSGT00940000165052 ENSGT00940000160748 ENSGT00530000063974.a ENSGT00390000016934 ENSGT00510000049316 ENSGT00390000007336 Tetrapoda ANCESTRAL SPECIES 2 ENSGT00940000160905 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00660000097148 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Amniota ANCESTRAL SPECIES 4 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Mammalia ANCESTRAL SPECIES 24 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00940000160907 ENSGT00530000063821.b.b ENSGT00390000013443.d Theria ANCESTRAL SPECIES 30 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Eutheria ANCESTRAL SPECIES 7 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Boreoeutheria ANCESTRAL SPECIES 10 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b Euarchontoglires ANCESTRAL SPECIES 10 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Euarchontoglires_A ANCESTRAL SPECIES 10 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Glires ANCESTRAL SPECIES 9 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Rodentia ANCESTRAL SPECIES 9 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Rodentia_A ANCESTRAL SPECIES 11 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Sciuridae ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Marmotini ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Marmotini_b ANCESTRAL SPECIES 88 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Arctic ground squirrel MODERN SPECIES 568 ENSUPAG00010016844 #21 KANK1 (ENSUPAG00010016810) #22 DMRT1 (ENSUPAG00010016791) #23 DMRT3 (ENSUPAG00010016785) #24 CYP51A1 (ENSUPAG00010016765) #25 LRRD1 (ENSUPAG00010016745) #26 KRIT1 (ENSUPAG00010016644) #27 ANKIB1 (ENSUPAG00010016604) #28 ENSUPAG00010016589 #29 GATAD1 (ENSUPAG00010016577) #30 PEX1 (ENSUPAG00010016509) #31 RBM48 (ENSUPAG00010016502) #32 ENSUPAG00010016496 #33 Squirrel MODERN SPECIES 103 CFAP95 (ENSSTOG00000012360) PTAR1 (ENSSTOG00000012685) APBA1 (ENSSTOG00000012678) ENTREP1 (ENSSTOG00000012667) TJP2 (ENSSTOG00000011181) ENSSTOG00000033140 PIP5K1B (ENSSTOG00000023540) PABIR1 (ENSSTOG00000022211) TMEM252 (ENSSTOG00000008860) PGM5 (ENSSTOG00000008834) ENSSTOG00000029964 ENSSTOG00000028764 ENSSTOG00000031824 DOCK8 (ENSSTOG00000016411) ENSSTOG00000030036 ##21 KANK1 (ENSSTOG00000010218) #22 DMRT1 (ENSSTOG00000010235) #23 DMRT3 (ENSSTOG00000023574) #24 DMRT2 (ENSSTOG00000026909) SMARCA2 (ENSSTOG00000006812) ENSSTOG00000031987 VLDLR (ENSSTOG00000006880) KCNV2 (ENSSTOG00000020003) PUM3 (ENSSTOG00000009586) RFX3 (ENSSTOG00000006974) GLIS3 (ENSSTOG00000000302) ENSSTOG00000031708 SLC1A1 (ENSSTOG00000023583) PLPP6 (ENSSTOG00000025831) SPATA6L (ENSSTOG00000000018) CDC37L1 (ENSSTOG00000000020) Alpin marmot MODERN SPECIES 32 PTAR1 (ENSMMMG00000011070) APBA1 (ENSMMMG00000011033) ENSMMMG00000011022 TJP2 (ENSMMMG00000003727) ENSMMMG00000003616 FXN (ENSMMMG00000003605) PIP5K1B (ENSMMMG00000003495) PABIR1 (ENSMMMG00000003490) TMEM252 (ENSMMMG00000003476) PGM5 (ENSMMMG00000003460) ENSMMMG00000003446 ENSMMMG00000003411 DOCK8 (ENSMMMG00000003328) ENSMMMG00000003304 ##21 ENSMMMG00000003301 KANK1 (ENSMMMG00000003281) #22 DMRT1 (ENSMMMG00000003270) #23 DMRT3 (ENSMMMG00000003239) #24 DMRT2 (ENSMMMG00000003238) ENSMMMG00000003212 SMARCA2 (ENSMMMG00000002811) ENSMMMG00000002785 ENSMMMG00000002765 VLDLR (ENSMMMG00000002594) ENSMMMG00000002572 KCNV2 (ENSMMMG00000002550) PUM3 (ENSMMMG00000002513) ENSMMMG00000002504 GLIS3 (ENSMMMG00000002430) ENSMMMG00000002416 ENSMMMG00000002405 Eurasian red squirrel MODERN SPECIES 6 MAMDC2 (ENSSVLG00005021856) CFAP95 (ENSSVLG00005021956) PTAR1 (ENSSVLG00005022066) APBA1 (ENSSVLG00005022160) ENTREP1 (ENSSVLG00005022461) TJP2 (ENSSVLG00005022528) ENSSVLG00005022798 PIP5K1B (ENSSVLG00005022876) PABIR1 (ENSSVLG00005023031) TMEM252 (ENSSVLG00005023049) PGM5 (ENSSVLG00005023081) ENSSVLG00005023212 ENSSVLG00005023230 ENSSVLG00005023280 DOCK8 (ENSSVLG00005023344) KANK1 (ENSSVLG00005023807) #22 DMRT1 (ENSSVLG00005023845) #23 DMRT3 (ENSSVLG00005023888) #24 DMRT2 (ENSSVLG00005023918) SMARCA2 (ENSSVLG00005024009) ENSSVLG00005024201 VLDLR (ENSSVLG00005024232) KCNV2 (ENSSVLG00005024318) PUM3 (ENSSVLG00005024338) ENSSVLG00005024401 RFX3 (ENSSVLG00005024420) GLIS3 (ENSSVLG00005024543) SLC1A1 (ENSSVLG00005024569) SPATA6L (ENSSVLG00005024615) PLPP6 (ENSSVLG00005024689) CDC37L1 (ENSSVLG00005024699) Hystricomorpha ANCESTRAL SPECIES 46 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Hystricomorpha_a ANCESTRAL SPECIES 53 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b.d ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Hystricomorpha_b ANCESTRAL SPECIES 71 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b.d ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Long-tailed chinchilla MODERN SPECIES 141 SMC5 (ENSCLAG00000005780) MAMDC2 (ENSCLAG00000004597) ENSCLAG00000005394 CFAP95 (ENSCLAG00000007041) PTAR1 (ENSCLAG00000008830) APBA1 (ENSCLAG00000006043) ENTREP1 (ENSCLAG00000007506) TJP2 (ENSCLAG00000012841) FXN (ENSCLAG00000009225) PIP5K1B (ENSCLAG00000011292) TMEM252 (ENSCLAG00000005523) PGM5 (ENSCLAG00000005854) ENSCLAG00000006762 ENSCLAG00000005076 DOCK8 (ENSCLAG00000005204) KANK1 (ENSCLAG00000015509) #22 DMRT1 (ENSCLAG00000015238) #23 DMRT3 (ENSCLAG00000015537) #24 DMRT2 (ENSCLAG00000006168) SMARCA2 (ENSCLAG00000014484) VLDLR (ENSCLAG00000007543) KCNV2 (ENSCLAG00000013226) PUM3 (ENSCLAG00000011892) RFX3 (ENSCLAG00000009044) GLIS3 (ENSCLAG00000008116) ENSCLAG00000009238 SLC1A1 (ENSCLAG00000009832) ENSCLAG00000009476 SPATA6L (ENSCLAG00000010497) PLPP6 (ENSCLAG00000017735) CDC37L1 (ENSCLAG00000005805) Degu MODERN SPECIES 128 ENSODEG00000019033 APBA1 (ENSODEG00000004217) ENTREP1 (ENSODEG00000004348) TJP2 (ENSODEG00000004420) FXN (ENSODEG00000003413) PIP5K1B (ENSODEG00000003585) ENSODEG00000003739 PABIR1 (ENSODEG00000019013) TMEM252 (ENSODEG00000003841) PGM5 (ENSODEG00000003917) ENSODEG00000003983 ENSODEG00000004467 ENSODEG00000004602 ENSODEG00000004711 ENSODEG00000004719 KANK1 (ENSODEG00000004766) #22 DMRT1 (ENSODEG00000004898) #23 DMRT3 (ENSODEG00000004984) #24 DMRT2 (ENSODEG00000004992) SMARCA2 (ENSODEG00000005452) ENSODEG00000006378 ENSODEG00000003492 KCNV2 (ENSODEG00000003536) ENSODEG00000003625 RFX3 (ENSODEG00000003682) GLIS3 (ENSODEG00000003731) SLC1A1 (ENSODEG00000003884) ENSODEG00000003949 SPATA6L (ENSODEG00000004066) PLPP6 (ENSODEG00000019026) CDC37L1 (ENSODEG00000004185) Guinea pig MODERN SPECIES 21 KLF9 (ENSCPOG00000031222) SMC5 (ENSCPOG00000000198) MAMDC2 (ENSCPOG00000002432) CFAP95 (ENSCPOG00000006639) PTAR1 (ENSCPOG00000008368) APBA1 (ENSCPOG00000032780) ENTREP1 (ENSCPOG00000003236) TJP2 (ENSCPOG00000021062) FXN (ENSCPOG00000004293) PIP5K1B (ENSCPOG00000004288) PABIR1 (ENSCPOG00000003280) TMEM252 (ENSCPOG00000013771) PGM5 (ENSCPOG00000015031) ENSCPOG00000019718 DOCK8 (ENSCPOG00000008366) KANK1 (ENSCPOG00000008389) #22 DMRT1 (ENSCPOG00000005909) #23 DMRT3 (ENSCPOG00000005912) #24 DMRT2 (ENSCPOG00000008452) SMARCA2 (ENSCPOG00000005475) VLDLR (ENSCPOG00000007685) KCNV2 (ENSCPOG00000032893) ENSCPOG00000008552 RFX3 (ENSCPOG00000000900) GLIS3 (ENSCPOG00000005523) ENSCPOG00000030794 SLC1A1 (ENSCPOG00000011151) PLPP6 (ENSCPOG00000012931) SPATA6L (ENSCPOG00000012925) CDC37L1 (ENSCPOG00000030938) AK3 (ENSCPOG00000011927) Naked mole-rat female MODERN SPECIES 3 ENSHGLG00000031959 TJP2 (ENSHGLG00000015590) FXN (ENSHGLG00000013859) PIP5K1B (ENSHGLG00000015519) PABIR1 (ENSHGLG00000021429) ENSHGLG00000045896 ENSHGLG00000040794 TMEM252 (ENSHGLG00000033131) PGM5 (ENSHGLG00000013086) ENSHGLG00000046909 CBWD3 (ENSHGLG00000015962) ENSHGLG00000020779 DOCK8 (ENSHGLG00000016578) ENSHGLG00000050403 ENSHGLG00000045832 KANK1 (ENSHGLG00000012000) #22 DMRT1 (ENSHGLG00000043033) #23 DMRT3 (ENSHGLG00000012858) #24 ENSHGLG00000033430 ENSHGLG00000036415 ENSHGLG00000035319 ENSHGLG00000013697 ENSHGLG00000005215 ENSHGLG00000035043 ENSHGLG00000016566 VLDLR (ENSHGLG00000016113) KCNV2 (ENSHGLG00000015810) ENSHGLG00000015868 ENSHGLG00000016314 ENSHGLG00000042585 ENSHGLG00000019207 Rodentia_B ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Kangaroo rat MODERN SPECIES 359 Trpm3 (ENSDORG00000009972) Klf9 (ENSDORG00000029268) Smc5 (ENSDORG00000009689) Mamdc2 (ENSDORG00000000884) Ptar1 (ENSDORG00000005855) Apba1 (ENSDORG00000003149) Entrep1 (ENSDORG00000001566) Tjp2 (ENSDORG00000009039) Fxn (ENSDORG00000027975) Pip5k1b (ENSDORG00000001153) Fam122a (ENSDORG00000001152) Tmem252 (ENSDORG00000005477) Pgm5 (ENSDORG00000005476) Cbwd1 (ENSDORG00000004917) Dock8 (ENSDORG00000007203) Kank1 (ENSDORG00000015159) #22 ENSDORG00000006363 #23 Dmrt2 (ENSDORG00000007216) Smarca2 (ENSDORG00000014832) Vldlr (ENSDORG00000012954) Kcnv2 (ENSDORG00000011511) ENSDORG00000003628 Rfx3 (ENSDORG00000013906) ENSDORG00000025494 Slc1a1 (ENSDORG00000010091) Plpp6 (ENSDORG00000003071) Cdc37l1 (ENSDORG00000023648) Ak3 (ENSDORG00000010355) Rcl1 (ENSDORG00000015645) Jak2 (ENSDORG00000011552) ENSDORG00000000109 Myomorpha ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Lesser Egyptian jerboa MODERN SPECIES 50 Mamdc2 (ENSJJAG00000010569) Cfap95 (ENSJJAG00000021419) Ptar1 (ENSJJAG00000017996) Apba1 (ENSJJAG00000021335) Entrep1 (ENSJJAG00000021132) Tjp2 (ENSJJAG00000003581) Fxn (ENSJJAG00000022666) Pip5k1b (ENSJJAG00000018154) Fam122a (ENSJJAG00000009421) Tmem252 (ENSJJAG00000015659) Pgm5 (ENSJJAG00000022690) ENSJJAG00000013817 ENSJJAG00000009646 ENSJJAG00000017231 ENSJJAG00000015498 Kank1 (ENSJJAG00000018774) #22 Dmrt1 (ENSJJAG00000016690) #23 Dmrt3 (ENSJJAG00000022573) #24 Dmrt2 (ENSJJAG00000023959) ENSJJAG00000010719 Smarca2 (ENSJJAG00000010867) Vldlr (ENSJJAG00000016440) ENSJJAG00000000409 Kcnv2 (ENSJJAG00000016782) Pum3 (ENSJJAG00000012563) ENSJJAG00000010263 Rfx3 (ENSJJAG00000010280) ENSJJAG00000024335 Glis3 (ENSJJAG00000011399) Slc1a1 (ENSJJAG00000018507) ENSJJAG00000020462 Muroidea ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Muroidea_A ANCESTRAL SPECIES ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Cricetidae ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Cricetinae ANCESTRAL SPECIES 2 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Chinese hamster chok1gshd MODERN SPECIES 401 Mamdc2 (ENSCGRG00001023333) Cfap95 (ENSCGRG00001000720) Ptar1 (ENSCGRG00001004346) Apba1 (ENSCGRG00001017033) Entrep1 (ENSCGRG00001002309) Tjp2 (ENSCGRG00001022408) Fxn (ENSCGRG00001003906) ENSCGRG00001013409 Pip5k1b (ENSCGRG00001017408) Fam122a (ENSCGRG00001012685) Tmem252 (ENSCGRG00001019081) Pgm5 (ENSCGRG00001020037) Foxd4 (ENSCGRG00001006276) Cbwd1 (ENSCGRG00001020851) Dock8 (ENSCGRG00001013079) Kank1 (ENSCGRG00001020355) #22 Dmrt1 (ENSCGRG00001000625) #23 Dmrt3 (ENSCGRG00001005036) #24 Dmrt2 (ENSCGRG00001007562) Smarca2 (ENSCGRG00001002323) Vldlr (ENSCGRG00001014399) ENSCGRG00001017895 Kcnv2 (ENSCGRG00001018140) Pum3 (ENSCGRG00001016402) Rfx3 (ENSCGRG00001021745) Glis3 (ENSCGRG00001014233) Slc1a1 (ENSCGRG00001022336) ENSCGRG00001023585 Spata6l (ENSCGRG00001002881) Plpp6 (ENSCGRG00001012981) Cdc37l1 (ENSCGRG00001000264) Golden Hamster MODERN SPECIES 617 Smc5 (ENSMAUG00000010150) Mamdc2 (ENSMAUG00000011315) Cfap95 (ENSMAUG00000009592) Ptar1 (ENSMAUG00000008946) Apba1 (ENSMAUG00000009290) Entrep1 (ENSMAUG00000010196) Tjp2 (ENSMAUG00000008987) Fxn (ENSMAUG00000009158) Pip5k1b (ENSMAUG00000010912) Fam122a (ENSMAUG00000002386) Tmem252 (ENSMAUG00000008962) Pgm5 (ENSMAUG00000009185) Cbwd1 (ENSMAUG00000009107) ENSMAUG00000009538 ENSMAUG00000009191 Kank1 (ENSMAUG00000009263) #22 ENSMAUG00000008975 #23 Dmrt3 (ENSMAUG00000008904) #24 Dmrt2 (ENSMAUG00000010038) ENSMAUG00000010070 ENSMAUG00000008807 ENSMAUG00000008613 ENSMAUG00000008768 Kcnv2 (ENSMAUG00000008727) Pum3 (ENSMAUG00000009733) Rfx3 (ENSMAUG00000009987) Slc1a1 (ENSMAUG00000009046) Plpp6 (ENSMAUG00000001915) Spata6l (ENSMAUG00000010530) Cdc37l1 (ENSMAUG00000008847) Ak3 (ENSMAUG00000008253) Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00940000160905 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Prairie vole MODERN SPECIES 16 Smc5 (ENSMOCG00000013931) Mamdc2 (ENSMOCG00000010608) Cfap95 (ENSMOCG00000018700) Ptar1 (ENSMOCG00000021324) Apba1 (ENSMOCG00000009892) Entrep1 (ENSMOCG00000018310) Tjp2 (ENSMOCG00000012468) Fxn (ENSMOCG00000014625) Pip5k1b (ENSMOCG00000017594) ENSMOCG00000010285 Fam122a (ENSMOCG00000001051) Tmem252 (ENSMOCG00000017938) Pgm5 (ENSMOCG00000011710) Cbwd1 (ENSMOCG00000015974) Dock8 (ENSMOCG00000014249) Kank1 (ENSMOCG00000020725) #22 ENSMOCG00000017971 #23 Dmrt3 (ENSMOCG00000015270) #24 Dmrt2 (ENSMOCG00000016701) Smarca2 (ENSMOCG00000001611) Vldlr (ENSMOCG00000004269) Kcnv2 (ENSMOCG00000014872) ENSMOCG00000019519 Rfx3 (ENSMOCG00000018931) Glis3 (ENSMOCG00000009953) Slc1a1 (ENSMOCG00000017507) ENSMOCG00000018225 Spata6l (ENSMOCG00000022082) Plpp6 (ENSMOCG00000001135) Cdc37l1 (ENSMOCG00000018341) Ak3 (ENSMOCG00000010856) Northern American deer mouse MODERN SPECIES Smc5 (ENSPEMG00000010351) ENSPEMG00000011160 ENSPEMG00000021172 Cfap95 (ENSPEMG00000021140) Ptar1 (ENSPEMG00000018036) Apba1 (ENSPEMG00000010980) Entrep1 (ENSPEMG00000020060) Tjp2 (ENSPEMG00000020250) ENSPEMG00000019884 Pip5k1b (ENSPEMG00000020095) Fam122a (ENSPEMG00000012823) Tmem252 (ENSPEMG00000007137) Pgm5 (ENSPEMG00000020205) Cbwd1 (ENSPEMG00000000396) Dock8 (ENSPEMG00000014001) Kank1 (ENSPEMG00000013916) #22 Dmrt1 (ENSPEMG00000019943) #23 Dmrt3 (ENSPEMG00000019990) #24 Dmrt2 (ENSPEMG00000019767) Smarca2 (ENSPEMG00000019821) ENSPEMG00000021666 Vldlr (ENSPEMG00000022250) Kcnv2 (ENSPEMG00000020138) ENSPEMG00000030423 ENSPEMG00000019340 Rfx3 (ENSPEMG00000019731) Glis3 (ENSPEMG00000020002) ENSPEMG00000004286 Slc1a1 (ENSPEMG00000009611) ENSPEMG00000021571 Spata6l (ENSPEMG00000023122) Murinae ANCESTRAL SPECIES ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Mus ANCESTRAL SPECIES ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00900000143396 ENSGT00940000155460 ENSGT00520000061590 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 Mus_A ANCESTRAL SPECIES 16 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00860000136305 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00900000143396 ENSGT00940000155460 ENSGT00520000061590 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 Mus_B ANCESTRAL SPECIES 16 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00860000136305 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00900000143396 ENSGT00940000155460 ENSGT00520000061590 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 Mus_C ANCESTRAL SPECIES 24 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00860000136305 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00900000143396 ENSGT00940000155460 ENSGT00520000061590 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00900000143153 ENSGT00530000063821.b.b ENSGT00940000160907 Steppe mouse MODERN SPECIES 3345 Cfap95 (ENSMSIG00000011339) Ptar1 (ENSMSIG00000011314) Apba1 (ENSMSIG00000011254) ENSMSIG00000011248 Entrep1 (ENSMSIG00000011206) Tjp2 (ENSMSIG00000010954) Fxn (ENSMSIG00000010910) ENSMSIG00000010906 Pip5k1b (ENSMSIG00000010797) Fam122a (ENSMSIG00000010786) Tmem252 (ENSMSIG00000010774) Pgm5 (ENSMSIG00000010743) Foxd4 (ENSMSIG00000010736) Cbwd1 (ENSMSIG00000010701) Dock8 (ENSMSIG00000010534) Kank1 (ENSMSIG00000010404) #22 Dmrt1 (ENSMSIG00000010363) #23 Dmrt3 (ENSMSIG00000010354) #24 Dmrt2 (ENSMSIG00000010341) spretus MODERN SPECIES 10 Mamdc2 (MGP_SPRETEiJ_G0023741) Cfap95 (MGP_SPRETEiJ_G0023742) Ptar1 (MGP_SPRETEiJ_G0023743) MGP_SPRETEiJ_G0023744 Apba1 (MGP_SPRETEiJ_G0023745) Entrep1 (MGP_SPRETEiJ_G0023746) Tjp2 (MGP_SPRETEiJ_G0023747) Fxn (MGP_SPRETEiJ_G0023748) Pip5k1b (MGP_SPRETEiJ_G0023749) Fam122a (MGP_SPRETEiJ_G0023750) Tmem252 (MGP_SPRETEiJ_G0023751) Pgm5 (MGP_SPRETEiJ_G0023752) Foxd4 (MGP_SPRETEiJ_G0023753) Cbwd1 (MGP_SPRETEiJ_G0023754) Dock8 (MGP_SPRETEiJ_G0023755) Kank1 (MGP_SPRETEiJ_G0023756) #22 Dmrt3 (MGP_SPRETEiJ_G0023757) #24 Dmrt2 (MGP_SPRETEiJ_G0023758) Smarca2 (MGP_SPRETEiJ_G0023759) MGP_SPRETEiJ_G0023760 Vldlr (MGP_SPRETEiJ_G0023761) Kcnv2 (MGP_SPRETEiJ_G0023762) Pum3 (MGP_SPRETEiJ_G0023763) Rfx3 (MGP_SPRETEiJ_G0023764) Glis3 (MGP_SPRETEiJ_G0023765) Slc1a1 (MGP_SPRETEiJ_G0023766) Spata6l (MGP_SPRETEiJ_G0023767) Plpp6 (MGP_SPRETEiJ_G0023768) Cdc37l1 (MGP_SPRETEiJ_G0023769) Ak3 (MGP_SPRETEiJ_G0023770) Rcl1 (MGP_SPRETEiJ_G0023771) Mouse MODERN SPECIES 10 Mamdc2 (ENSMUSG00000033207) Cfap95 (ENSMUSG00000033053) Ptar1 (ENSMUSG00000074925) Apba1 (ENSMUSG00000024897) Entrep1 (ENSMUSG00000071604) Tjp2 (ENSMUSG00000024812) Fxn (ENSMUSG00000059363) Pip5k1b (ENSMUSG00000024867) Fam122a (ENSMUSG00000074922) Tmem252 (ENSMUSG00000048572) Pgm5 (ENSMUSG00000041731) Gm10053 (ENSMUSG00000058927) Foxd4 (ENSMUSG00000051490) Cbwd1 (ENSMUSG00000024878) Dock8 (ENSMUSG00000052085) Kank1 (ENSMUSG00000032702) #22 Dmrt1 (ENSMUSG00000024837) #23 Dmrt3 (ENSMUSG00000042372) #24 Dmrt2 (ENSMUSG00000048138) Smarca2 (ENSMUSG00000024921) Gm815 (ENSMUSG00000074913) Vldlr (ENSMUSG00000024924) Kcnv2 (ENSMUSG00000047298) Pum3 (ENSMUSG00000041360) Rfx3 (ENSMUSG00000040929) Glis3 (ENSMUSG00000052942) Slc1a1 (ENSMUSG00000024935) Spata6l (ENSMUSG00000064202) Plpp6 (ENSMUSG00000040105) Cdc37l1 (ENSMUSG00000024780) Ak3 (ENSMUSG00000024782) Ryukyu mouse MODERN SPECIES 10 Mamdc2 (MGP_CAROLIEiJ_G0022822) Cfap95 (MGP_CAROLIEiJ_G0022823) Ptar1 (MGP_CAROLIEiJ_G0022824) MGP_CAROLIEiJ_G0022825 Apba1 (MGP_CAROLIEiJ_G0022826) Entrep1 (MGP_CAROLIEiJ_G0022827) Tjp2 (MGP_CAROLIEiJ_G0022828) Fxn (MGP_CAROLIEiJ_G0022829) Pip5k1b (MGP_CAROLIEiJ_G0022830) Fam122a (MGP_CAROLIEiJ_G0022831) Tmem252 (MGP_CAROLIEiJ_G0022832) Pgm5 (MGP_CAROLIEiJ_G0022833) Foxd4 (MGP_CAROLIEiJ_G0022834) Cbwd1 (MGP_CAROLIEiJ_G0022835) Dock8 (MGP_CAROLIEiJ_G0022836) Kank1 (MGP_CAROLIEiJ_G0022837) #22 Dmrt1 (MGP_CAROLIEiJ_G0022838) #23 Dmrt3 (MGP_CAROLIEiJ_G0022839) #24 Dmrt2 (MGP_CAROLIEiJ_G0022840) Smarca2 (MGP_CAROLIEiJ_G0022841) MGP_CAROLIEiJ_G0022842 Vldlr (MGP_CAROLIEiJ_G0022843) Kcnv2 (MGP_CAROLIEiJ_G0022844) Pum3 (MGP_CAROLIEiJ_G0022845) Rfx3 (MGP_CAROLIEiJ_G0022846) Glis3 (MGP_CAROLIEiJ_G0022847) Slc1a1 (MGP_CAROLIEiJ_G0022848) Spata6l (MGP_CAROLIEiJ_G0022849) Plpp6 (MGP_CAROLIEiJ_G0022850) Cdc37l1 (MGP_CAROLIEiJ_G0022851) Ak3 (MGP_CAROLIEiJ_G0022852) Shrew mouse MODERN SPECIES Klf9 (MGP_PahariEiJ_G0014314) Smc5 (MGP_PahariEiJ_G0014315) Mamdc2 (MGP_PahariEiJ_G0014316) Cfap95 (MGP_PahariEiJ_G0014317) Ptar1 (MGP_PahariEiJ_G0014318) Apba1 (MGP_PahariEiJ_G0014319) Entrep1 (MGP_PahariEiJ_G0014320) Tjp2 (MGP_PahariEiJ_G0014321) MGP_PahariEiJ_G0014322 Fam122a (MGP_PahariEiJ_G0014324) Tmem252 (MGP_PahariEiJ_G0014325) Pgm5 (MGP_PahariEiJ_G0014326) Foxd4 (MGP_PahariEiJ_G0014327) Cbwd1 (MGP_PahariEiJ_G0014328) Dock8 (MGP_PahariEiJ_G0014329) Kank1 (MGP_PahariEiJ_G0014330) #22 Dmrt1 (MGP_PahariEiJ_G0014331) #23 Dmrt3 (MGP_PahariEiJ_G0014332) #24 Dmrt2 (MGP_PahariEiJ_G0014333) Smarca2 (MGP_PahariEiJ_G0014334) MGP_PahariEiJ_G0014335 Vldlr (MGP_PahariEiJ_G0014336) Kcnv2 (MGP_PahariEiJ_G0014337) Pum3 (MGP_PahariEiJ_G0014338) Rfx3 (MGP_PahariEiJ_G0014339) Glis3 (MGP_PahariEiJ_G0014340) Slc1a1 (MGP_PahariEiJ_G0014341) Spata6l (MGP_PahariEiJ_G0014342) Plpp6 (MGP_PahariEiJ_G0014343) Cdc37l1 (MGP_PahariEiJ_G0014344) Ak3 (MGP_PahariEiJ_G0014345) Rat MODERN SPECIES Mamdc2 (ENSRNOG00000024620) Cfap95 (ENSRNOG00000036615) Ptar1 (ENSRNOG00000014891) Apba1 (ENSRNOG00000014928) Entrep1 (ENSRNOG00000061147) Tjp2 (ENSRNOG00000015030) Fxn (ENSRNOG00000015213) Pip5k1b (ENSRNOG00000015232) Pabir1 (ENSRNOG00000051051) Tmem252 (ENSRNOG00000025476) Pgm5 (ENSRNOG00000015406) Foxd4 (ENSRNOG00000050486) Zng1a (ENSRNOG00000015516) Dock8 (ENSRNOG00000015894) Hmgb1-ps4 (ENSRNOG00000065098) Kank1 (ENSRNOG00000016023) #22 Dmrt1 (ENSRNOG00000016075) #23 Dmrt3 (ENSRNOG00000016284) #24 Dmrt2 (ENSRNOG00000016301) ENSRNOG00000062555 Smarca2 (ENSRNOG00000011931) ENSRNOG00000069446 Vldlr (ENSRNOG00000027491) ENSRNOG00000062591 Kcnv2 (ENSRNOG00000012566) Pum3 (ENSRNOG00000012574) Rfx3 (ENSRNOG00000014486) ENSRNOG00000066761 Glis3 (ENSRNOG00000014768) Slc1a1 (ENSRNOG00000014816) ENSRNOG00000065811 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1026 ENSNGAG00000019946 #22 ENSNGAG00000009667 Upper Galilee mountains blind mole rat MODERN SPECIES 994 ENSNGAG00000016775 ENSNGAG00000001837 #22 ENSNGAG00000005862 ENSNGAG00000012874 ENSNGAG00000014855 ENSNGAG00000000860 Rorb (ENSNGAG00000007086) Trpm6 (ENSNGAG00000005371) D030056L22Rik (ENSNGAG00000015165) Carnmt1 (ENSNGAG00000013885) Nmrk1 (ENSNGAG00000019838) Ostf1 (ENSNGAG00000020920) Lagomorpha ANCESTRAL SPECIES 77 ENSGT01100000263667 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489.n #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 Rabbit MODERN SPECIES ENSOCUG00000021364 MAMDC2 (ENSOCUG00000000271) CFAP95 (ENSOCUG00000008788) PTAR1 (ENSOCUG00000012575) ENSOCUG00000013515 ENTREP1 (ENSOCUG00000013503) TJP2 (ENSOCUG00000013019) FXN (ENSOCUG00000015076) PIP5K1B (ENSOCUG00000015811) PABIR1 (ENSOCUG00000002637) ENSOCUG00000014142 PGM5 (ENSOCUG00000014125) ENSOCUG00000010467 ENSOCUG00000000733 DOCK8 (ENSOCUG00000003208) KANK1 (ENSOCUG00000004753) #22 ENSOCUG00000036685 DMRT3 (ENSOCUG00000004582) #24 ENSOCUG00000027863 DMRT2 (ENSOCUG00000003299) ENSOCUG00000037388 ENSOCUG00000034834 ENSOCUG00000023438 ENSOCUG00000035677 ENSOCUG00000000241 SMARCA2 (ENSOCUG00000006320) ENSOCUG00000022775 VLDLR (ENSOCUG00000002231) KCNV2 (ENSOCUG00000004385) ENSOCUG00000004189 ENSOCUG00000039572 Pika MODERN SPECIES 352 ENSOPRG00000005395 #22 Tree shrew MODERN SPECIES 192 KANK1 (ENSTBEG00000001767) #22 DMRT1 (ENSTBEG00000002038) #23 DMRT3 (ENSTBEG00000002058) #24 ENSTBEG00000002166 Primates ANCESTRAL SPECIES 9 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Haplorrhini ANCESTRAL SPECIES 9 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d ENSGT00940000155120 Simiiformes ANCESTRAL SPECIES 11 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Catarrhini ANCESTRAL SPECIES 13 ENSGT00390000017892 ENSGT00910000147698 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Hominoidea ANCESTRAL SPECIES 23 ENSGT00390000017892 ENSGT00910000147698 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Hominidae ANCESTRAL SPECIES 10 ENSGT00390000017892 ENSGT00910000147698 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353.a ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Homo/Pan/Gorilla group ANCESTRAL SPECIES 10 ENSGT00910000147698 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353.a.a.a ENSGT00940000163353.a.a.b ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Gorilla MODERN SPECIES 22 MAMDC2 (ENSGGOG00000027946) CFAP95 (ENSGGOG00000005837) PTAR1 (ENSGGOG00000008891) APBA1 (ENSGGOG00000016410) ENSGGOG00000011230 TJP2 (ENSGGOG00000010313) FXN (ENSGGOG00000007636) PIP5K1B (ENSGGOG00000013948) PABIR1 (ENSGGOG00000034987) TMEM252 (ENSGGOG00000015514) ENSGGOG00000037092 FOXD4 (ENSGGOG00000003673) ENSGGOG00000022867 ENSGGOG00000015757 DOCK8 (ENSGGOG00000008791) KANK1 (ENSGGOG00000005466) #22 DMRT1 (ENSGGOG00000013298) #23 DMRT3 (ENSGGOG00000013303) #24 DMRT2 (ENSGGOG00000025101) ENSGGOG00000039224 SMARCA2 (ENSGGOG00000000513) ENSGGOG00000038609 VLDLR (ENSGGOG00000001362) KCNV2 (ENSGGOG00000000231) PUM3 (ENSGGOG00000006143) ENSGGOG00000022372 RFX3 (ENSGGOG00000003805) GLIS3 (ENSGGOG00000038970) SLC1A1 (ENSGGOG00000000262) PLPP6 (ENSGGOG00000040149) SPATA6L (ENSGGOG00000034964) Homo/Pan group ANCESTRAL SPECIES 27 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Pan ANCESTRAL SPECIES 26 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 22 ENSPTRG00000031407 ENSPTRG00000020994 ENSPTRG00000052275 DOCK8 (ENSPTRG00000020725) ENSPTRG00000044534 KANK1 (ENSPTRG00000041819) #22 DMRT1 (ENSPTRG00000020728) #23 DMRT3 (ENSPTRG00000020729) #24 DMRT2 (ENSPTRG00000020730) SMARCA2 (ENSPTRG00000051168) ENSPTRG00000052144 ENSPTRG00000047815 VLDLR (ENSPTRG00000020732) KCNV2 (ENSPTRG00000020734) PUM3 (ENSPTRG00000020735) ENSPTRG00000046907 RFX3 (ENSPTRG00000048670) ENSPTRG00000050873 GLIS3 (ENSPTRG00000020738) SLC1A1 (ENSPTRG00000020739) SPATA6L (ENSPTRG00000020740) Chimpanzee MODERN SPECIES 902 ENSPTRG00000043491 #22 Human MODERN SPECIES 21 WASHC1 (ENSG00000181404) FOXD4 (ENSG00000170122) ZNG1A (ENSG00000172785) DOCK8 (ENSG00000107099) KANK1 (ENSG00000107104) #22 DMRT1 (ENSG00000137090) #23 DMRT3 (ENSG00000064218) #24 DMRT2 (ENSG00000173253) SMARCA2 (ENSG00000080503) VLDLR (ENSG00000147852) KCNV2 (ENSG00000168263) PUM3 (ENSG00000080608) RFX3 (ENSG00000080298) GLIS3 (ENSG00000107249) SLC1A1 (ENSG00000106688) SPATA6L (ENSG00000106686) PLPP6 (ENSG00000205808) CDC37L1 (ENSG00000106993) AK3 (ENSG00000147853) RCL1 (ENSG00000120158) Orangutan MODERN SPECIES 22 MAMDC2 (ENSPPYG00000019281) CFAP95 (ENSPPYG00000019280) PTAR1 (ENSPPYG00000019279) APBA1 (ENSPPYG00000019278) ENTREP1 (ENSPPYG00000019277) TJP2 (ENSPPYG00000019275) PRKACG (ENSPPYG00000019273) ENSPPYG00000019272 PABIR1 (ENSPPYG00000019271) TMEM252 (ENSPPYG00000019269) PGM5 (ENSPPYG00000019268) ENSPPYG00000041038 ZNG1A (ENSPPYG00000019265) ENSPPYG00000030930 DOCK8 (ENSPPYG00000019264) KANK1 (ENSPPYG00000019262) #22 DMRT1 (ENSPPYG00000019261) #23 DMRT3 (ENSPPYG00000019260) #24 DMRT2 (ENSPPYG00000035747) SMARCA2 (ENSPPYG00000019258) ENSPPYG00000041078 VLDLR (ENSPPYG00000019257) KCNV2 (ENSPPYG00000019256) PUM3 (ENSPPYG00000019255) ENSPPYG00000019254 RFX3 (ENSPPYG00000019253) GLIS3 (ENSPPYG00000019250) SLC1A1 (ENSPPYG00000019249) PLPP6 (ENSPPYG00000019248) SPATA6L (ENSPPYG00000019247) CDC37L1 (ENSPPYG00000019246) Gibbon MODERN SPECIES 10 ENSNLEG00000031982 ENSNLEG00000028086 PIP5K1B (ENSNLEG00000008227) PABIR1 (ENSNLEG00000034102) ENSNLEG00000030468 TMEM252 (ENSNLEG00000028670) ENSNLEG00000008260 ENSNLEG00000018739 ENSNLEG00000008264 ENSNLEG00000008270 ENSNLEG00000028331 DOCK8 (ENSNLEG00000008451) KANK1 (ENSNLEG00000008510) #22 ENSNLEG00000018709 DMRT1 (ENSNLEG00000008544) #23 DMRT3 (ENSNLEG00000008556) #24 DMRT2 (ENSNLEG00000008564) SMARCA2 (ENSNLEG00000008575) ENSNLEG00000029055 ENSNLEG00000008695 VLDLR (ENSNLEG00000008596) KCNV2 (ENSNLEG00000008701) PUM3 (ENSNLEG00000008712) ENSNLEG00000029981 RFX3 (ENSNLEG00000008785) ENSNLEG00000028743 ENSNLEG00000034817 ENSNLEG00000035119 Cercopithecidae ANCESTRAL SPECIES 9 ENSGT00390000017892 ENSGT00910000147698 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00940000154318.B.i.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b Cercopithecinae ANCESTRAL SPECIES 12 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00940000154318.B.i.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b Cercopithecinae_a ANCESTRAL SPECIES 12 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00940000154318.B.i.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00940000159989.h ENSGT00910000146957 ENSGT00940000156896 Cercopithecinae_b ANCESTRAL SPECIES 7 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000154318.B.i.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00940000159989.h ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b Cercopithecinae_d ANCESTRAL SPECIES 34 ENSGT01100000263667 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000154318.B.i.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00940000159989.h ENSGT00910000146957 ENSGT00940000156896 ENSGT00940000155397.b Drill MODERN SPECIES 1670 ENSMLEG00000044051 MAMDC2 (ENSMLEG00000030462) CFAP95 (ENSMLEG00000026731) PTAR1 (ENSMLEG00000036036) ENSMLEG00000027123 APBA1 (ENSMLEG00000041409) ENTREP1 (ENSMLEG00000041914) TJP2 (ENSMLEG00000014673) FXN (ENSMLEG00000033476) PIP5K1B (ENSMLEG00000030468) TMEM252 (ENSMLEG00000014717) PGM5 (ENSMLEG00000016495) ENSMLEG00000042816 ENSMLEG00000037825 DOCK8 (ENSMLEG00000039264) KANK1 (ENSMLEG00000040800) #22 DMRT1 (ENSMLEG00000034610) #23 DMRT3 (ENSMLEG00000006865) #24 DMRT2 (ENSMLEG00000031258) Sooty mangabey MODERN SPECIES 629 ENSCATG00000030908 MAMDC2 (ENSCATG00000032191) CFAP95 (ENSCATG00000038166) PTAR1 (ENSCATG00000044016) APBA1 (ENSCATG00000037394) ENTREP1 (ENSCATG00000029249) TJP2 (ENSCATG00000004548) FXN (ENSCATG00000031607) PIP5K1B (ENSCATG00000030684) TMEM252 (ENSCATG00000030856) PGM5 (ENSCATG00000040727) FOXD4L1 (ENSCATG00000041044) ENSCATG00000043151 ENSCATG00000035578 DOCK8 (ENSCATG00000037251) KANK1 (ENSCATG00000042088) #22 DMRT1 (ENSCATG00000043860) #23 DMRT3 (ENSCATG00000043509) #24 DMRT2 (ENSCATG00000032878) SMARCA2 (ENSCATG00000031470) ENSCATG00000034215 ENSCATG00000014393 VLDLR (ENSCATG00000033177) KCNV2 (ENSCATG00000037552) PUM3 (ENSCATG00000024880) ENSCATG00000034924 ENSCATG00000029808 RFX3 (ENSCATG00000034639) ENSCATG00000030409 GLIS3 (ENSCATG00000038488) SLC1A1 (ENSCATG00000039114) Olive baboon MODERN SPECIES 4 PTAR1 (ENSPANG00000025099) APBA1 (ENSPANG00000025107) ENTREP1 (ENSPANG00000025108) ENSPANG00000045180 ENSPANG00000050497 TJP2 (ENSPANG00000025110) FXN (ENSPANG00000025109) PRKACG (ENSPANG00000041885) PIP5K1B (ENSPANG00000025113) ENSPANG00000042661 TMEM252 (ENSPANG00000025115) PGM5 (ENSPANG00000025114) FOXD4L1 (ENSPANG00000009332) ENSPANG00000025116 DOCK8 (ENSPANG00000025117) KANK1 (ENSPANG00000025125) #22 DMRT1 (ENSPANG00000025124) #23 DMRT3 (ENSPANG00000025123) #24 DMRT2 (ENSPANG00000025122) SMARCA2 (ENSPANG00000025121) ENSPANG00000042712 VLDLR (ENSPANG00000025120) KCNV2 (ENSPANG00000025119) PUM3 (ENSPANG00000025118) RFX3 (ENSPANG00000025143) ENSPANG00000046940 GLIS3 (ENSPANG00000025157) SLC1A1 (ENSPANG00000025156) SPATA6L (ENSPANG00000025154) CDC37L1 (ENSPANG00000025153) AK3 (ENSPANG00000025152) Macaca ANCESTRAL SPECIES 10 ENSGT01100000263667 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00940000154318.B.i.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.cb ENSGT01050000244879.a.a.b ENSGT00940000159989.h ENSGT00910000146957 ENSGT00940000156896 Pig-tailed macaque MODERN SPECIES 182 ENSMNEG00000005674 APBA1 (ENSMNEG00000036013) ENTREP1 (ENSMNEG00000040043) TJP2 (ENSMNEG00000036109) FXN (ENSMNEG00000034453) PIP5K1B (ENSMNEG00000011196) TMEM252 (ENSMNEG00000034076) PGM5 (ENSMNEG00000042872) FOXD4L1 (ENSMNEG00000037878) ENSMNEG00000034389 ENSMNEG00000005621 ENSMNEG00000040201 DOCK8 (ENSMNEG00000042769) KANK1 (ENSMNEG00000029060) #22 DMRT1 (ENSMNEG00000036006) #23 DMRT3 (ENSMNEG00000035240) #24 DMRT2 (ENSMNEG00000033851) SMARCA2 (ENSMNEG00000041069) ENSMNEG00000028744 ENSMNEG00000040152 ENSMNEG00000044919 VLDLR (ENSMNEG00000040863) KCNV2 (ENSMNEG00000012723) PUM3 (ENSMNEG00000035288) ENSMNEG00000032248 RFX3 (ENSMNEG00000038188) ENSMNEG00000042708 ENSMNEG00000040313 GLIS3 (ENSMNEG00000032738) Macaca_a ANCESTRAL SPECIES 10 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000163244.d.b.a.b.b.b.b.b.b.b.b.a.b.a.b.a.b.b.a.a.a.a.a ENSGT00940000165129 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00390000010770.r ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT01100000264112.b.a ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00940000160907 ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Crab-eating macaque MODERN SPECIES 6 ENSMFAG00000031379 ENTREP1 (ENSMFAG00000032849) TJP2 (ENSMFAG00000001435) FXN (ENSMFAG00000041923) ENSMFAG00000053935 ENSMFAG00000063759 PRKACG (ENSMFAG00000030376) PIP5K1B (ENSMFAG00000038711) TMEM252 (ENSMFAG00000062896) PGM5 (ENSMFAG00000045131) ENSMFAG00000044635 ENSMFAG00000051139 ENSMFAG00000045857 DOCK8 (ENSMFAG00000008069) ENSMFAG00000047680 KANK1 (ENSMFAG00000036947) #22 ENSMFAG00000060255 DMRT3 (ENSMFAG00000045391) #24 DMRT2 (ENSMFAG00000040812) ENSMFAG00000058821 ENSMFAG00000056188 ENSMFAG00000003814 ENSMFAG00000048099 VLDLR (ENSMFAG00000032374) KCNV2 (ENSMFAG00000055892) PUM3 (ENSMFAG00000001430) ENSMFAG00000049201 RFX3 (ENSMFAG00000000237) ENSMFAG00000049557 ENSMFAG00000030908 SLC1A1 (ENSMFAG00000038163) Rhesus MODERN SPECIES 6 APBA1 (ENSMMUG00000011401) ENTREP1 (ENSMMUG00000005401) TJP2 (ENSMMUG00000003780) FXN (ENSMMUG00000000357) ENSMMUG00000064488 PRKACG (ENSMMUG00000020379) PIP5K1B (ENSMMUG00000012472) TMEM252 (ENSMMUG00000056154) PGM5 (ENSMMUG00000008230) FOXD4L1 (ENSMMUG00000023182) ZNG1A (ENSMMUG00000016193) ENSMMUG00000050562 ENSMMUG00000058086 DOCK8 (ENSMMUG00000016976) ENSMMUG00000064601 KANK1 (ENSMMUG00000019862) #22 ENSMMUG00000061012 DMRT3 (ENSMMUG00000044083) #24 DMRT2 (ENSMMUG00000014844) ENSMMUG00000051059 SMARCA2 (ENSMMUG00000015279) VLDLR (ENSMMUG00000015093) KCNV2 (ENSMMUG00000060949) PUM3 (ENSMMUG00000002362) RFX3 (ENSMMUG00000000802) GLIS3 (ENSMMUG00000057568) SLC1A1 (ENSMMUG00000000135) PLPP6 (ENSMMUG00000059411) SPATA6L (ENSMMUG00000000136) CDC37L1 (ENSMMUG00000000141) AK3 (ENSMMUG00000000143) Vervet Monkey MODERN SPECIES 3 CFAP95 (ENSCSAG00000008403) PTAR1 (ENSCSAG00000008413) APBA1 (ENSCSAG00000008422) ENTREP1 (ENSCSAG00000008432) TJP2 (ENSCSAG00000008451) FXN (ENSCSAG00000008470) PRKACG (ENSCSAG00000018499) PIP5K1B (ENSCSAG00000008511) PABIR1 (ENSCSAG00000018497) TMEM252 (ENSCSAG00000008529) PGM5 (ENSCSAG00000008540) FOXD4L1 (ENSCSAG00000018495) ENSCSAG00000008555 ENSCSAG00000018493 DOCK8 (ENSCSAG00000008591) KANK1 (ENSCSAG00000008611) #22 DMRT1 (ENSCSAG00000008623) #23 DMRT3 (ENSCSAG00000008627) #24 DMRT2 (ENSCSAG00000008632) SMARCA2 (ENSCSAG00000008650) ENSCSAG00000008657 VLDLR (ENSCSAG00000008671) KCNV2 (ENSCSAG00000008677) PUM3 (ENSCSAG00000008691) RFX3 (ENSCSAG00000008704) ENSCSAG00000008711 SLC1A1 (ENSCSAG00000008723) PLPP6 (ENSCSAG00000018491) SPATA6L (ENSCSAG00000008768) CDC37L1 (ENSCSAG00000008790) AK3 (ENSCSAG00000008801) Rhinopithecus ANCESTRAL SPECIES 227 ENSGT00390000014593 ENSGT00390000017892 ENSGT00910000147698 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.w.a ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00390000010770.q.a ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 Black snub-nosed monkey MODERN SPECIES 90 TMEM252 (ENSRBIG00000012350) PGM5 (ENSRBIG00000031935) ENSRBIG00000042766 ENSRBIG00000034943 ENSRBIG00000041692 DOCK8 (ENSRBIG00000031277) KANK1 (ENSRBIG00000030454) #22 DMRT1 (ENSRBIG00000040985) #23 DMRT3 (ENSRBIG00000030818) #24 DMRT2 (ENSRBIG00000038326) SMARCA2 (ENSRBIG00000038618) ENSRBIG00000039498 SLC24A3 (ENSRBIG00000026610) RIN2 (ENSRBIG00000030048) NAA20 (ENSRBIG00000037845) CRNKL1 (ENSRBIG00000031770) CFAP61 (ENSRBIG00000013830) RALGAPA2 (ENSRBIG00000011325) ENSRBIG00000044906 KIZ (ENSRBIG00000004023) XRN2 (ENSRBIG00000036193) Golden snub-nosed monkey MODERN SPECIES 1156 ITGB1 (ENSRROG00000044827) NRP1 (ENSRROG00000036541) PGM5 (ENSRROG00000035630) ENSRROG00000004214 ENSRROG00000041612 ENSRROG00000031285 DOCK8 (ENSRROG00000030555) KANK1 (ENSRROG00000028581) #22 DMRT1 (ENSRROG00000035111) #23 DMRT3 (ENSRROG00000033393) #24 DMRT2 (ENSRROG00000028272) ENSRROG00000034283 SMARCA2 (ENSRROG00000019271) Platyrrhini ANCESTRAL SPECIES 8 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00390000005811.w.a ENSGT00940000158634 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523.r ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Cebidae ANCESTRAL SPECIES 7 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00390000005811.w.a ENSGT00940000158634 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523.r ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Cebidae_a ANCESTRAL SPECIES 92 ENSGT01100000263667 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00390000005811.w.a ENSGT00940000158634 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523.r ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00910000146995 ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00390000004049.ab ENSGT00530000063402.a.h ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b Bolivian squirrel monkey MODERN SPECIES 118 ENSSBOG00000000121 MAMDC2 (ENSSBOG00000034000) CFAP95 (ENSSBOG00000031509) PTAR1 (ENSSBOG00000023248) APBA1 (ENSSBOG00000029213) ENTREP1 (ENSSBOG00000021064) FXN (ENSSBOG00000022179) TJP2 (ENSSBOG00000035815) PIP5K1B (ENSSBOG00000027534) TMEM252 (ENSSBOG00000022996) PGM5 (ENSSBOG00000030297) ENSSBOG00000020533 ENSSBOG00000031336 ENSSBOG00000032210 DOCK8 (ENSSBOG00000020599) KANK1 (ENSSBOG00000032525) #22 DMRT1 (ENSSBOG00000027694) #23 DMRT3 (ENSSBOG00000027585) #24 DMRT2 (ENSSBOG00000010665) ENSSBOG00000019886 SMARCA2 (ENSSBOG00000034827) ENSSBOG00000020747 VLDLR (ENSSBOG00000031091) KCNV2 (ENSSBOG00000023504) PUM3 (ENSSBOG00000028066) ENSSBOG00000022458 ENSSBOG00000026932 ENSSBOG00000016907 RFX3 (ENSSBOG00000031103) GLIS3 (ENSSBOG00000032997) ENSSBOG00000019687 Capuchin MODERN SPECIES 155 MAMDC2 (ENSCCAG00000021404) CFAP95 (ENSCCAG00000037801) PTAR1 (ENSCCAG00000007749) APBA1 (ENSCCAG00000021335) FAM189A2 (ENSCCAG00000021474) FXN (ENSCCAG00000000008) TJP2 (ENSCCAG00000028382) PIP5K1B (ENSCCAG00000030428) TMEM252 (ENSCCAG00000036655) PGM5 (ENSCCAG00000032767) ENSCCAG00000021273 ENSCCAG00000034259 ENSCCAG00000033543 DOCK8 (ENSCCAG00000036920) ENSCCAG00000032927 KANK1 (ENSCCAG00000037749) #22 Marmoset MODERN SPECIES GNAQ (ENSCJAG00000003268) ENSCJAG00000003266 ENSCJAG00000072998 ENSCJAG00000084872 ENSCJAG00000054232 ENSCJAG00000032275 ENSCJAG00000003147 ENSCJAG00000074827 ENSCJAG00000085396 ENSCJAG00000073324 ENSCJAG00000040149 ENSCJAG00000010423 ENSCJAG00000054365 ENSCJAG00000078334 DOCK8 (ENSCJAG00000010485) KANK1 (ENSCJAG00000010595) #22 ENSCJAG00000084547 DMRT3 (ENSCJAG00000063670) #24 DMRT2 (ENSCJAG00000010690) SMARCA2 (ENSCJAG00000010710) ENSCJAG00000042690 VLDLR (ENSCJAG00000010772) KCNV2 (ENSCJAG00000042809) PUM3 (ENSCJAG00000010917) RFX3 (ENSCJAG00000010996) GLIS3 (ENSCJAG00000011083) ENSCJAG00000073768 SLC1A1 (ENSCJAG00000011113) SPATA6L (ENSCJAG00000011136) PLPP6 (ENSCJAG00000063898) AK3 (ENSCJAG00000011188) Mas night monkey MODERN SPECIES 953 HABP4 (ENSANAG00000035090) ZNF367 (ENSANAG00000033540) SLC35D2 (ENSANAG00000028518) HSD17B3 (ENSANAG00000032106) ERCC6L2 (ENSANAG00000023092) PTCH1 (ENSANAG00000029389) ENSANAG00000030325 FANCC (ENSANAG00000028572) ENSANAG00000010088 AOPEP (ENSANAG00000030033) ENSANAG00000026785 FBP2 (ENSANAG00000031346) ENSANAG00000032497 ENSANAG00000032441 DOCK8 (ENSANAG00000027539) KANK1 (ENSANAG00000025213) #22 Tarsier MODERN SPECIES 5848 PIP5K1B (ENSTSYG00000003509) PABIR1 (ENSTSYG00000002497) TMEM252 (ENSTSYG00000014722) PGM5 (ENSTSYG00000014721) ENSTSYG00000005361 DOCK8 (ENSTSYG00000002647) KANK1 (ENSTSYG00000004109) #22 DMRT1 (ENSTSYG00000009148) #23 DMRT3 (ENSTSYG00000034280) #24 DMRT2 (ENSTSYG00000008920) Strepsirrhini ANCESTRAL SPECIES 8 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892.c ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896.q ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Bushbaby MODERN SPECIES 121 CFAP95 (ENSOGAG00000009764) PTAR1 (ENSOGAG00000009760) ENSOGAG00000029654 APBA1 (ENSOGAG00000006812) ENTREP1 (ENSOGAG00000006806) TJP2 (ENSOGAG00000014757) ENSOGAG00000031105 PIP5K1B (ENSOGAG00000009431) PABIR1 (ENSOGAG00000024522) TMEM252 (ENSOGAG00000015132) PGM5 (ENSOGAG00000015121) ENSOGAG00000029277 ENSOGAG00000002011 DOCK8 (ENSOGAG00000004639) ENSOGAG00000031226 KANK1 (ENSOGAG00000001985) #22 DMRT1 (ENSOGAG00000001989) #23 DMRT3 (ENSOGAG00000026565) #24 DMRT2 (ENSOGAG00000001994) ENSOGAG00000025218 SMARCA2 (ENSOGAG00000017053) VLDLR (ENSOGAG00000013312) KCNV2 (ENSOGAG00000030433) ENSOGAG00000008125 RFX3 (ENSOGAG00000007762) GLIS3 (ENSOGAG00000007376) SLC1A1 (ENSOGAG00000007464) PLPP6 (ENSOGAG00000007472) SPATA6L (ENSOGAG00000007468) CDC37L1 (ENSOGAG00000007475) AK3 (ENSOGAG00000007477) Lemuriformes ANCESTRAL SPECIES 59 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892.c ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896.q ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Lemuriformes_a ANCESTRAL SPECIES 86 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892.c ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523.s ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896.q ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d ENSGT00940000155120 Coquerels sifaka MODERN SPECIES 231 ENSPCOG00000024651 MAMDC2 (ENSPCOG00000016914) CFAP95 (ENSPCOG00000027657) PTAR1 (ENSPCOG00000007700) APBA1 (ENSPCOG00000021063) ENSPCOG00000021110 TJP2 (ENSPCOG00000021976) FXN (ENSPCOG00000015134) PIP5K1B (ENSPCOG00000007236) PABIR1 (ENSPCOG00000013255) TMEM252 (ENSPCOG00000027673) PGM5 (ENSPCOG00000026468) ENSPCOG00000009086 ENSPCOG00000025145 DOCK8 (ENSPCOG00000018543) KANK1 (ENSPCOG00000016148) #22 DMRT1 (ENSPCOG00000004952) #23 DMRT3 (ENSPCOG00000007225) #24 DMRT2 (ENSPCOG00000025937) Greater bamboo lemur MODERN SPECIES 152 SMC5 (ENSPSMG00000025788) MAMDC2 (ENSPSMG00000025779) CFAP95 (ENSPSMG00000025775) PTAR1 (ENSPSMG00000025771) APBA1 (ENSPSMG00000025768) ENTREP1 (ENSPSMG00000025763) TJP2 (ENSPSMG00000025742) FXN (ENSPSMG00000025681) PIP5K1B (ENSPSMG00000025678) PABIR1 (ENSPSMG00000025658) TMEM252 (ENSPSMG00000025655) PGM5 (ENSPSMG00000025652) ENSPSMG00000025644 ENSPSMG00000025574 DOCK8 (ENSPSMG00000025332) KANK1 (ENSPSMG00000025243) #22 DMRT1 (ENSPSMG00000025222) #23 DMRT3 (ENSPSMG00000025210) #24 DMRT2 (ENSPSMG00000025206) ENSPSMG00000025195 SMARCA2 (ENSPSMG00000025173) ENSPSMG00000025075 VLDLR (ENSPSMG00000025041) KCNV2 (ENSPSMG00000024960) ENSPSMG00000024956 ENSPSMG00000024950 RFX3 (ENSPSMG00000024938) GLIS3 (ENSPSMG00000024897) SLC1A1 (ENSPSMG00000024890) PLPP6 (ENSPSMG00000024881) SPATA6L (ENSPSMG00000024878) Mouse lemur DUPLICATION Mouse lemur MODERN SPECIES 27 CASP12 (ENSMICG00000001832) ENSMICG00000001846 ENSMICG00000028150 ENSMICG00000042671 GRIA4 (ENSMICG00000003112) MSANTD4 (ENSMICG00000036595) KBTBD3 (ENSMICG00000030981) AASDHPPT (ENSMICG00000032630) ENSMICG00000036566 ENSMICG00000035020 GUCY1A2 (ENSMICG00000004925) CWF19L2 (ENSMICG00000010853) ALKBH8 (ENSMICG00000001044) ELMOD1 (ENSMICG00000001050) SLC35F2 (ENSMICG00000000245) ENSMICG00000038149 #22 RAB39A (ENSMICG00000045554) CUL5 (ENSMICG00000000376) ENSMICG00000028194 ACAT1 (ENSMICG00000000380) NPAT (ENSMICG00000000386) ATM (ENSMICG00000013655) ENSMICG00000001104 C11orf65 (ENSMICG00000003461) POGLUT3 (ENSMICG00000003463) EXPH5 (ENSMICG00000044911) DDX10 (ENSMICG00000035071) ZC3H12C (ENSMICG00000011455) RDX (ENSMICG00000011469) FDX1 (ENSMICG00000007112) ENSMICG00000002989 Mouse lemur MODERN SPECIES 1 SMC5 (ENSMICG00000028308) MAMDC2 (ENSMICG00000001043) CFAP95 (ENSMICG00000033544) PTAR1 (ENSMICG00000001040) APBA1 (ENSMICG00000009602) ENTREP1 (ENSMICG00000002917) TJP2 (ENSMICG00000002908) FXN (ENSMICG00000044611) PIP5K1B (ENSMICG00000004323) TMEM252 (ENSMICG00000044472) PGM5 (ENSMICG00000015998) ENSMICG00000036465 ENSMICG00000005330 ENSMICG00000031232 DOCK8 (ENSMICG00000008267) KANK1 (ENSMICG00000010410) #22 DMRT1 (ENSMICG00000010417) #23 DMRT3 (ENSMICG00000044854) #24 DMRT2 (ENSMICG00000010426) SMARCA2 (ENSMICG00000005162) ENSMICG00000005190 VLDLR (ENSMICG00000005182) KCNV2 (ENSMICG00000005193) PUM3 (ENSMICG00000045916) ENSMICG00000029542 RFX3 (ENSMICG00000011871) ENSMICG00000041775 ENSMICG00000031277 SLC1A1 (ENSMICG00000005171) SPATA6L (ENSMICG00000017688) CDC37L1 (ENSMICG00000017690) Laurasiatheria ANCESTRAL SPECIES 9 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Laurasiatheria_a ANCESTRAL SPECIES 11 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Artiodactyla ANCESTRAL SPECIES 7 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Suina ANCESTRAL SPECIES 23 ENSGT01100000263667 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00520000061590 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Chacoan peccary MODERN SPECIES 20 MAMDC2 (ENSCWAG00000018276) CFAP95 (ENSCWAG00000018298) PTAR1 (ENSCWAG00000018370) APBA1 (ENSCWAG00000018421) ENTREP1 (ENSCWAG00000018486) TJP2 (ENSCWAG00000018633) ENSCWAG00000019132 FXN (ENSCWAG00000019158) PIP5K1B (ENSCWAG00000019197) PABIR1 (ENSCWAG00000019304) TMEM252 (ENSCWAG00000019312) PGM5 (ENSCWAG00000019336) ENSCWAG00000019440 ENSCWAG00000019496 DOCK8 (ENSCWAG00000019884) KANK1 (ENSCWAG00000020332) #22 DMRT1 (ENSCWAG00000020382) #23 DMRT3 (ENSCWAG00000020400) #24 DMRT2 (ENSCWAG00000020422) ENSCWAG00000020471 SMARCA2 (ENSCWAG00000020512) VLDLR (ENSCWAG00000020653) ENSCWAG00000020684 KCNV2 (ENSCWAG00000020693) PUM3 (ENSCWAG00000020700) RFX3 (ENSCWAG00000020726) ENSCWAG00000020759 GLIS3 (ENSCWAG00000020767) SLC1A1 (ENSCWAG00000020776) SPATA6L (ENSCWAG00000020801) PLPP6 (ENSCWAG00000020823) Pig MODERN SPECIES ENSSSCG00000005255 MAMDC2 (ENSSSCG00000030655) CFAP95 (ENSSSCG00000035668) PTAR1 (ENSSSCG00000005252) APBA1 (ENSSSCG00000005250) ENTREP1 (ENSSSCG00000005249) TJP2 (ENSSSCG00000005247) ENSSSCG00000032999 PIP5K1B (ENSSSCG00000027161) PABIR1 (ENSSSCG00000057474) TMEM252 (ENSSSCG00000037125) PGM5 (ENSSSCG00000005243) ENSSSCG00000041279 ENSSSCG00000005241 DOCK8 (ENSSSCG00000005240) KANK1 (ENSSSCG00000005235) #22 DMRT1 (ENSSSCG00000005236) #23 DMRT3 (ENSSSCG00000040481) #24 DMRT2 (ENSSSCG00000005233) ENSSSCG00000046403 ENSSSCG00000044946 ENSSSCG00000032324 ENSSSCG00000057314 ENSSSCG00000005232 ENSSSCG00000041522 ENSSSCG00000052990 ENSSSCG00000040670 VLDLR (ENSSSCG00000005229) KCNV2 (ENSSSCG00000005228) PUM3 (ENSSSCG00000005227) ENSSSCG00000039823 Artiodactyla_a ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Artiodactyla_b ANCESTRAL SPECIES 7 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Cetacea ANCESTRAL SPECIES 9 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00990000210075 ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00940000164995 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Odontoceti ANCESTRAL SPECIES 8 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.f ENSGT00990000210075 ENSGT00390000005811.e.a ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000165777.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Odontoceti_a ANCESTRAL SPECIES 15 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.f ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000165777.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Odontoceti_b ANCESTRAL SPECIES 8 ENSGT01100000263674 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.f.b ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000165777.a.a ENSGT01050000244891.A.c.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b Monodontidae ANCESTRAL SPECIES 5 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00990000210075 ENSGT00940000158634 ENSGT00390000005811.f.b ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000165777.a.a ENSGT01050000244891.A.c.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b Narwhal MODERN SPECIES 312 MAMDC2 (ENSMMNG00015013893) CFAP95 (ENSMMNG00015013867) PTAR1 (ENSMMNG00015013843) APBA1 (ENSMMNG00015013818) ENTREP1 (ENSMMNG00015013797) ENSMMNG00015013780 TJP2 (ENSMMNG00015013657) FXN (ENSMMNG00015013572) PIP5K1B (ENSMMNG00015013540) PABIR1 (ENSMMNG00015013514) TMEM252 (ENSMMNG00015013503) PGM5 (ENSMMNG00015013485) ENSMMNG00015013464 ENSMMNG00015013419 DOCK8 (ENSMMNG00015013245) KANK1 (ENSMMNG00015013138) #22 DMRT1 (ENSMMNG00015013112) #23 DMRT3 (ENSMMNG00015013099) #24 DMRT2 (ENSMMNG00015013077) ENSMMNG00015021427 ENSMMNG00015021422 SMARCA2 (ENSMMNG00015021345) VLDLR (ENSMMNG00015021252) KCNV2 (ENSMMNG00015021226) PUM3 (ENSMMNG00015021202) ENSMMNG00015021179 RFX3 (ENSMMNG00015021042) GLIS3 (ENSMMNG00015021011) SLC1A1 (ENSMMNG00015020990) PLPP6 (ENSMMNG00015020983) SPATA6L (ENSMMNG00015020944) Beluga whale MODERN SPECIES 50 MAMDC2 (ENSDLEG00000009814) CUNH9orf135 (ENSDLEG00000009843) PTAR1 (ENSDLEG00000009863) APBA1 (ENSDLEG00000009910) ENTREP1 (ENSDLEG00000010006) ENSDLEG00000010351 ENSDLEG00000011517 FXN (ENSDLEG00000011543) PIP5K1B (ENSDLEG00000011558) PABIR1 (ENSDLEG00000011588) TMEM252 (ENSDLEG00000011598) PGM5 (ENSDLEG00000011615) ENSDLEG00000011631 ENSDLEG00000011652 DOCK8 (ENSDLEG00000012329) KANK1 (ENSDLEG00000019090) #22 DMRT1 (ENSDLEG00000019261) #23 DMRT3 (ENSDLEG00000019280) #24 ENSDLEG00000019284 DMRT2 (ENSDLEG00000019289) ENSDLEG00000019303 ENSDLEG00000019309 SMARCA2 (ENSDLEG00000019318) VLDLR (ENSDLEG00000019340) KCNV2 (ENSDLEG00000019382) PUM3 (ENSDLEG00000019389) RFX3 (ENSDLEG00000019460) ENSDLEG00000019514 ENSDLEG00000019522 SLC1A1 (ENSDLEG00000019531) ENSDLEG00000019547 Vaquita MODERN SPECIES 17 CFAP95 (ENSPSNG00000013463) PTAR1 (ENSPSNG00000013672) APBA1 (ENSPSNG00000013831) ENTREP1 (ENSPSNG00000014040) TJP2 (ENSPSNG00000014370) ENSPSNG00000015578 ENSPSNG00000015625 ENSPSNG00000015658 PIP5K1B (ENSPSNG00000015709) PABIR1 (ENSPSNG00000016069) TMEM252 (ENSPSNG00000016104) PGM5 (ENSPSNG00000016170) ENSPSNG00000016403 ENSPSNG00000016463 DOCK8 (ENSPSNG00000016745) KANK1 (ENSPSNG00000018178) #22 DMRT1 (ENSPSNG00000018301) #23 DMRT3 (ENSPSNG00000018387) #24 DMRT2 (ENSPSNG00000018429) ENSPSNG00000018606 ENSPSNG00000018632 SMARCA2 (ENSPSNG00000018802) VLDLR (ENSPSNG00000019297) KCNV2 (ENSPSNG00000019443) PUM3 (ENSPSNG00000019496) RFX3 (ENSPSNG00000019643) GLIS3 (ENSPSNG00000019903) SLC1A1 (ENSPSNG00000019992) SPATA6L (ENSPSNG00000020084) PLPP6 (ENSPSNG00000020203) CDC37L1 (ENSPSNG00000020228) Dolphin MODERN SPECIES 3323 DOCK8 (ENSTTRG00000014161) KANK1 (ENSTTRG00000014170) #22 DMRT1 (ENSTTRG00000014171) #23 DMRT3 (ENSTTRG00000014172) #24 Sperm whale MODERN SPECIES 20 MAMDC2 (ENSPCTG00005003566) CFAP95 (ENSPCTG00005003586) PTAR1 (ENSPCTG00005003621) APBA1 (ENSPCTG00005003656) FAM189A2 (ENSPCTG00005003682) TJP2 (ENSPCTG00005003735) ENSPCTG00005003835 FXN (ENSPCTG00005003847) PIP5K1B (ENSPCTG00005003865) FAM122A (ENSPCTG00005003904) TMEM252 (ENSPCTG00005003909) PGM5 (ENSPCTG00005003918) ENSPCTG00005003942 ENSPCTG00005004008 DOCK8 (ENSPCTG00005004178) KANK1 (ENSPCTG00005004438) #22 DMRT1 (ENSPCTG00005004498) #23 DMRT3 (ENSPCTG00005004535) #24 DMRT2 (ENSPCTG00005004572) ENSPCTG00005004671 ENSPCTG00005004691 ENSPCTG00005004736 VLDLR (ENSPCTG00005004995) KCNV2 (ENSPCTG00005005193) PUM3 (ENSPCTG00005005228) ENSPCTG00005005299 RFX3 (ENSPCTG00005005359) GLIS3 (ENSPCTG00005005407) SLC1A1 (ENSPCTG00005005440) SPATA6L (ENSPCTG00005005489) PLPP6 (ENSPCTG00005005512) Blue whale MODERN SPECIES 17 CFAP95 (ENSBMSG00010001190) PTAR1 (ENSBMSG00010001151) APBA1 (ENSBMSG00010001122) ENTREP1 (ENSBMSG00010001047) ENSBMSG00010001005 TJP2 (ENSBMSG00010000778) FXN (ENSBMSG00010000687) PIP5K1B (ENSBMSG00010000638) ENSBMSG00010000615 TMEM252 (ENSBMSG00010000603) PGM5 (ENSBMSG00010000557) ENSBMSG00010000512 ENSBMSG00010000431 DOCK8 (ENSBMSG00010000177) ENSBMSG00010000100 KANK1 (ENSBMSG00010000089) #22 DMRT1 (ENSBMSG00010004442) #23 DMRT3 (ENSBMSG00010004420) #24 DMRT2 (ENSBMSG00010004396) SMARCA2 (ENSBMSG00010004262) VLDLR (ENSBMSG00010004233) KCNV2 (ENSBMSG00010004219) PUM3 (ENSBMSG00010004204) RFX3 (ENSBMSG00010004165) GLIS3 (ENSBMSG00010004124) SLC1A1 (ENSBMSG00010004095) PLPP6 (ENSBMSG00010004080) SPATA6L (ENSBMSG00010004050) CDC37L1 (ENSBMSG00010004036) AK3 (ENSBMSG00010004013) RCL1 (ENSBMSG00010003993) Pecora ANCESTRAL SPECIES 30 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00660000097148 ENSGT00940000155397.b ENSGT00940000160907 ENSGT00530000063821.b.b Percora_a ANCESTRAL SPECIES 24 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00660000097148 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Bovidae ANCESTRAL SPECIES 14 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00660000097148 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Caprinae ANCESTRAL SPECIES 14 ENSGT01100000263674 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00660000097148 ENSGT00940000155397.b ENSGT00940000160907 ENSGT00530000063821.b.b ENSGT00390000013443.d Goat MODERN SPECIES 27 KLF9 (ENSCHIG00000008018) ENSCHIG00000017511 MAMDC2 (ENSCHIG00000015154) CFAP95 (ENSCHIG00000022040) PTAR1 (ENSCHIG00000007358) APBA1 (ENSCHIG00000016850) ENSCHIG00000022109 TJP2 (ENSCHIG00000009916) FXN (ENSCHIG00000019169) PIP5K1B (ENSCHIG00000015013) TMEM252 (ENSCHIG00000021046) PGM5 (ENSCHIG00000006743) ENSCHIG00000006716 ENSCHIG00000024887 DOCK8 (ENSCHIG00000014695) KANK1 (ENSCHIG00000018134) #22 DMRT1 (ENSCHIG00000024212) #23 DMRT3 (ENSCHIG00000013041) #24 DMRT2 (ENSCHIG00000020138) SMARCA2 (ENSCHIG00000025863) ENSCHIG00000012185 VLDLR (ENSCHIG00000021572) KCNV2 (ENSCHIG00000011625) PUM3 (ENSCHIG00000021559) RFX3 (ENSCHIG00000011556) ENSCHIG00000019534 ENSCHIG00000007959 SLC1A1 (ENSCHIG00000018337) PLPP6 (ENSCHIG00000001745) SPATA6L (ENSCHIG00000020946) ENSCHIG00000010369 Rambouillet Sheep MODERN SPECIES 11 ENSOARG00020018830 MAMDC2 (ENSOARG00020019142) CFAP95 (ENSOARG00020019250) PTAR1 (ENSOARG00020019372) APBA1 (ENSOARG00020019533) ENTREP1 (ENSOARG00020019624) ENSOARG00020019784 TJP2 (ENSOARG00020019889) PIP5K1B (ENSOARG00020021769) ENSOARG00020022107 FAM122A (ENSOARG00020022127) TMEM252 (ENSOARG00020022146) PGM5 (ENSOARG00020022177) ENSOARG00020022393 DOCK8 (ENSOARG00020022900) KANK1 (ENSOARG00020024004) #22 DMRT1 (ENSOARG00020024107) #23 DMRT3 (ENSOARG00020024138) #24 DMRT2 (ENSOARG00020024148) SMARCA2 (ENSOARG00020024243) VLDLR (ENSOARG00020024482) ENSOARG00020024556 KCNV2 (ENSOARG00020006537) PUM3 (ENSOARG00020006587) ENSOARG00020006681 RFX3 (ENSOARG00020006756) GLIS3 (ENSOARG00020007233) SLC1A1 (ENSOARG00020007364) PLPP6 (ENSOARG00020007422) ENSOARG00020007455 CDC37L1 (ENSOARG00020007479) Bovinae ANCESTRAL SPECIES 14 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Bos ANCESTRAL SPECIES 10 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Bos_b ANCESTRAL SPECIES 3 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00940000160907 ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Hybrid Bos Indicus MODERN SPECIES 27 ENSBIXG00005015663 MAMDC2 (ENSBIXG00005015686) CFAP95 (ENSBIXG00005015744) PTAR1 (ENSBIXG00005015792) APBA1 (ENSBIXG00005000159) ENTREP1 (ENSBIXG00005015945) TJP2 (ENSBIXG00005016444) FXN (ENSBIXG00005016495) PIP5K1B (ENSBIXG00005002661) TMEM252 (ENSBIXG00005002669) ENSBIXG00005002670 PGM5 (ENSBIXG00005016605) ENSBIXG00005016626 ENSBIXG00005017167 DOCK8 (ENSBIXG00005002913) KANK1 (ENSBIXG00005018119) #22 DMRT1 (ENSBIXG00005018189) #23 DMRT3 (ENSBIXG00005018199) #24 DMRT2 (ENSBIXG00005018266) SMARCA2 (ENSBIXG00005018551) ENSBIXG00005005990 VLDLR (ENSBIXG00005003037) KCNV2 (ENSBIXG00005018778) PUM3 (ENSBIXG00005018805) ENSBIXG00005018899 RFX3 (ENSBIXG00005003091) GLIS3 (ENSBIXG00005002642) ENSBIXG00005019106 SLC1A1 (ENSBIXG00005019133) PLPP6 (ENSBIXG00005019138) ENSBIXG00005019159 Cow MODERN SPECIES 27 MAMDC2 (ENSBTAG00000017369) CFAP95 (ENSBTAG00000033396) PTAR1 (ENSBTAG00000005826) APBA1 (ENSBTAG00000008877) ENTREP1 (ENSBTAG00000011173) TJP2 (ENSBTAG00000011770) FXN (ENSBTAG00000001306) PIP5K1B (ENSBTAG00000009917) TMEM252 (ENSBTAG00000011874) ENSBTAG00000049235 PGM5 (ENSBTAG00000033190) ENSBTAG00000033122 ENSBTAG00000000269 ENSBTAG00000049728 DOCK8 (ENSBTAG00000002190) KANK1 (ENSBTAG00000010976) #22 DMRT1 (ENSBTAG00000033352) #23 DMRT3 (ENSBTAG00000017800) #24 DMRT2 (ENSBTAG00000008062) SMARCA2 (ENSBTAG00000007494) ENSBTAG00000051041 ENSBTAG00000048500 VLDLR (ENSBTAG00000018517) KCNV2 (ENSBTAG00000017884) PUM3 (ENSBTAG00000013357) RFX3 (ENSBTAG00000000819) ENSBTAG00000014467 ENSBTAG00000052736 SLC1A1 (ENSBTAG00000019125) PLPP6 (ENSBTAG00000011050) ENSBTAG00000046486 Bos_a ANCESTRAL SPECIES 30 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a ENSGT00940000158126 ENSGT00390000009110.fb ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00910000144347.a.a ENSGT00390000013443.d Domestic yak MODERN SPECIES 26 CFAP95 (ENSBGRG00000000656) PTAR1 (ENSBGRG00000000713) APBA1 (ENSBGRG00000000786) ENTREP1 (ENSBGRG00000000954) TJP2 (ENSBGRG00000001216) ENSBGRG00000002457 PIP5K1B (ENSBGRG00000002519) TMEM252 (ENSBGRG00000002724) PGM5 (ENSBGRG00000002775) ENSBGRG00000002858 ENSBGRG00000002865 ENSBGRG00000002878 ENSBGRG00000002972 DOCK8 (ENSBGRG00000003466) ENSBGRG00000003655 KANK1 (ENSBGRG00000003717) #22 DMRT1 (ENSBGRG00000003868) #23 DMRT3 (ENSBGRG00000003946) #24 DMRT2 (ENSBGRG00000003984) SMARCA2 (ENSBGRG00000004107) VLDLR (ENSBGRG00000004545) KCNV2 (ENSBGRG00000004767) PUM3 (ENSBGRG00000004833) ENSBGRG00000004951 RFX3 (ENSBGRG00000004985) ENSBGRG00000005081 ENSBGRG00000005096 GLIS3 (ENSBGRG00000005123) SLC1A1 (ENSBGRG00000005214) SPATA6L (ENSBGRG00000005420) PLPP6 (ENSBGRG00000005557) Wild yak MODERN SPECIES 1150 FXN (ENSBMUG00000009346) PIP5K1B (ENSBMUG00000009326) TMEM252 (ENSBMUG00000009272) PGM5 (ENSBMUG00000009266) ENSBMUG00000009246 ENSBMUG00000009244 ENSBMUG00000008736 DOCK8 (ENSBMUG00000008468) KANK1 (ENSBMUG00000008397) #22 ENSBMUG00000008309 #23 DMRT3 (ENSBMUG00000008302) #24 DMRT2 (ENSBMUG00000008275) SMARCA2 (ENSBMUG00000008202) American bison MODERN SPECIES 3328 MAMDC2 (ENSBBBG00000004784) CFAP95 (ENSBBBG00000004778) PTAR1 (ENSBBBG00000004773) APBA1 (ENSBBBG00000004757) ENTREP1 (ENSBBBG00000004748) TJP2 (ENSBBBG00000018750) FXN (ENSBBBG00000018035) PIP5K1B (ENSBBBG00000008201) PABIR1 (ENSBBBG00000017969) TMEM252 (ENSBBBG00000017966) PGM5 (ENSBBBG00000004418) ENSBBBG00000017925 ENSBBBG00000017865 DOCK8 (ENSBBBG00000017006) ENSBBBG00000000733 KANK1 (ENSBBBG00000007906) #22 DMRT1 (ENSBBBG00000016649) #23 DMRT3 (ENSBBBG00000016636) #24 DMRT2 (ENSBBBG00000016627) SMARCA2 (ENSBBBG00000004105) ENSBBBG00000016209 VLDLR (ENSBBBG00000008333) ENSBBBG00000007174 KCNV2 (ENSBBBG00000016123) PUM3 (ENSBBBG00000007035) RFX3 (ENSBBBG00000003993) GLIS3 (ENSBBBG00000016019) SLC1A1 (ENSBBBG00000015989) SPATA6L (ENSBBBG00000015978) PLPP6 (ENSBBBG00000015953) ENSBBBG00000003969 Siberian musk deer MODERN SPECIES 112 PTAR1 (ENSMMSG00000003980) APBA1 (ENSMMSG00000003955) ENTREP1 (ENSMMSG00000003933) ENSMMSG00000003926 TJP2 (ENSMMSG00000003336) FXN (ENSMMSG00000003257) PIP5K1B (ENSMMSG00000003205) PABIR1 (ENSMMSG00000003185) ENSMMSG00000003177 TMEM252 (ENSMMSG00000003173) PGM5 (ENSMMSG00000003148) ENSMMSG00000003127 ENSMMSG00000002933 ENSMMSG00000002885 DOCK8 (ENSMMSG00000002837) KANK1 (ENSMMSG00000002767) #22 ENSMMSG00000002748 DMRT1 (ENSMMSG00000002731) #23 DMRT3 (ENSMMSG00000002720) #24 DMRT2 (ENSMMSG00000002675) ENSMMSG00000002655 SMARCA2 (ENSMMSG00000002325) ENSMMSG00000002272 Yarkand deer MODERN SPECIES 21 ENSCHYG00000020191 PTAR1 (ENSCHYG00000020094) APBA1 (ENSCHYG00000019877) ENTREP1 (ENSCHYG00000019624) TJP2 (ENSCHYG00000017274) FXN (ENSCHYG00000017028) ENSCHYG00000016971 PIP5K1B (ENSCHYG00000016753) PABIR1 (ENSCHYG00000016706) TMEM252 (ENSCHYG00000016651) ENSCHYG00000016626 PGM5 (ENSCHYG00000016305) ENSCHYG00000016258 ENSCHYG00000015376 DOCK8 (ENSCHYG00000014734) KANK1 (ENSCHYG00000014368) #22 ENSCHYG00000014288 DMRT1 (ENSCHYG00000014189) #23 DMRT3 (ENSCHYG00000026880) #24 DMRT2 (ENSCHYG00000026873) SMARCA2 (ENSCHYG00000026820) ENSCHYG00000026782 VLDLR (ENSCHYG00000026763) KCNV2 (ENSCHYG00000026745) PUM3 (ENSCHYG00000026723) RFX3 (ENSCHYG00000026695) GLIS3 (ENSCHYG00000026667) SLC1A1 (ENSCHYG00000026638) PLPP6 (ENSCHYG00000026621) SPATA6L (ENSCHYG00000026599) CDC37L1 (ENSCHYG00000026576) Camelidae ANCESTRAL SPECIES 5 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000169111 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d ENSGT00940000155120 Arabian camel MODERN SPECIES 30 MAMDC2 (ENSCDRG00005001896) CFAP95 (ENSCDRG00005001938) PTAR1 (ENSCDRG00005001969) APBA1 (ENSCDRG00005002013) ENTREP1 (ENSCDRG00005002279) TJP2 (ENSCDRG00005002337) FXN (ENSCDRG00005002495) PIP5K1B (ENSCDRG00005002534) PABIR1 (ENSCDRG00005002619) TMEM252 (ENSCDRG00005002626) PGM5 (ENSCDRG00005002644) ENSCDRG00005002664 ENSCDRG00005002760 ENSCDRG00005003094 DOCK8 (ENSCDRG00005003115) KANK1 (ENSCDRG00005003188) #22 DMRT1 (ENSCDRG00005003226) #23 DMRT3 (ENSCDRG00005003237) #24 DMRT2 (ENSCDRG00005003248) ENSCDRG00005003352 VLDLR (ENSCDRG00005003699) KCNV2 (ENSCDRG00005003822) PUM3 (ENSCDRG00005003846) ENSCDRG00005003916 RFX3 (ENSCDRG00005004007) GLIS3 (ENSCDRG00005004109) SLC1A1 (ENSCDRG00005004192) SPATA6L (ENSCDRG00005004284) PLPP6 (ENSCDRG00005004350) CDC37L1 (ENSCDRG00005004358) AK3 (ENSCDRG00005004398) Laurasiatheria_b ANCESTRAL SPECIES 11 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Carnivora ANCESTRAL SPECIES 25 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Caniformia ANCESTRAL SPECIES 29 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000164995 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Caniformia_b ANCESTRAL SPECIES 32 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Ursidae ANCESTRAL SPECIES 43 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Ursus ANCESTRAL SPECIES 50 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT00940000166172 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d American black bear MODERN SPECIES 2738 KANK1 (ENSUAMG00000021890) #22 ENSUAMG00000021889 #23 ENSUAMG00000021888 #23 Polar bear MODERN SPECIES 171 KLF9 (ENSUMAG00000021920) SMC5 (ENSUMAG00000021802) MAMDC2 (ENSUMAG00000021684) CFAP95 (ENSUMAG00000021672) PTAR1 (ENSUMAG00000021667) APBA1 (ENSUMAG00000021636) ENTREP1 (ENSUMAG00000021620) TJP2 (ENSUMAG00000020541) ENSUMAG00000020328 PIP5K1B (ENSUMAG00000020312) PABIR1 (ENSUMAG00000020302) TMEM252 (ENSUMAG00000020280) PGM5 (ENSUMAG00000020142) ENSUMAG00000020081 DOCK8 (ENSUMAG00000019524) KANK1 (ENSUMAG00000019362) #22 ENSUMAG00000019350 #23 DMRT2 (ENSUMAG00000019339) ENSUMAG00000019328 ENSUMAG00000019303 VLDLR (ENSUMAG00000018747) KCNV2 (ENSUMAG00000018690) PUM3 (ENSUMAG00000018443) ENSUMAG00000018187 ENSUMAG00000018118 RFX3 (ENSUMAG00000018101) GLIS3 (ENSUMAG00000018031) SLC1A1 (ENSUMAG00000017970) ENSUMAG00000017954 SPATA6L (ENSUMAG00000017942) CDC37L1 (ENSUMAG00000017926) Giant Panda MODERN SPECIES 8 KLF9 (ENSAMEG00000007114) ENSAMEG00000007051 MAMDC2 (ENSAMEG00000007021) CFAP95 (ENSAMEG00000007019) PTAR1 (ENSAMEG00000007011) APBA1 (ENSAMEG00000006989) ENTREP1 (ENSAMEG00000006981) TJP2 (ENSAMEG00000006921) ENSAMEG00000006915 PIP5K1B (ENSAMEG00000008089) TMEM252 (ENSAMEG00000008083) PGM5 (ENSAMEG00000008064) ENSAMEG00000025926 ENSAMEG00000006824 DOCK8 (ENSAMEG00000006698) KANK1 (ENSAMEG00000006667) #22 DMRT3 (ENSAMEG00000006664) #24 DMRT2 (ENSAMEG00000006648) ENSAMEG00000019747 SMARCA2 (ENSAMEG00000012325) ENSAMEG00000027822 VLDLR (ENSAMEG00000012233) KCNV2 (ENSAMEG00000012228) PUM3 (ENSAMEG00000012187) ENSAMEG00000012183 RFX3 (ENSAMEG00000012132) GLIS3 (ENSAMEG00000002733) SLC1A1 (ENSAMEG00000002682) ENSAMEG00000002674 CDC37L1 (ENSAMEG00000002657) AK3 (ENSAMEG00000002640) Mustelinae ANCESTRAL SPECIES 87 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00940000160907 ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 American mink MODERN SPECIES 72 SMC5 (ENSNVIG00000010560) MAMDC2 (ENSNVIG00000010507) CFAP95 (ENSNVIG00000010477) PTAR1 (ENSNVIG00000010455) APBA1 (ENSNVIG00000010432) ENTREP1 (ENSNVIG00000010390) TJP2 (ENSNVIG00000009677) ENSNVIG00000009630 FXN (ENSNVIG00000009610) PIP5K1B (ENSNVIG00000009548) CI071 (ENSNVIG00000009508) PGM5 (ENSNVIG00000009442) ENSNVIG00000009420 ENSNVIG00000008929 DOCK8 (ENSNVIG00000008726) KANK1 (ENSNVIG00000008630) #22 DMRT1 (ENSNVIG00000008608) #23 DMRT3 (ENSNVIG00000008601) #24 DMRT2 (ENSNVIG00000008589) SMARCA2 (ENSNVIG00000008097) VLDLR (ENSNVIG00000008014) KCNV2 (ENSNVIG00000007991) K0020 (ENSNVIG00000007919) RFX3 (ENSNVIG00000007796) Ferret MODERN SPECIES 281 ENSMPUG00000005707 DOCK8 (ENSMPUG00000005223) KANK1 (ENSMPUG00000005216) #22 DMRT1 (ENSMPUG00000005204) #23 DMRT2 (ENSMPUG00000005199) ENSMPUG00000005192 SMARCA2 (ENSMPUG00000005171) ENSMPUG00000005169 VLDLR (ENSMPUG00000005155) KCNV2 (ENSMPUG00000005137) PUM3 (ENSMPUG00000005125) ENSMPUG00000005120 RFX3 (ENSMPUG00000005101) GLIS3 (ENSMPUG00000005095) SLC1A1 (ENSMPUG00000005081) SPATA6L (ENSMPUG00000005024) CDC37L1 (ENSMPUG00000005018) AK3 (ENSMPUG00000005006) Canidae ANCESTRAL SPECIES 47 ENSGT01100000263674 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00990000204089 ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Canis_lupus ANCESTRAL SPECIES ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00990000204089 ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00950000183030.m.a.b.a.a.a ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00950000182772.A.a.b.n.b ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Dog MODERN SPECIES MAMDC2 (ENSCAFG00845000707) ENSCAFG00845000740 CFAP95 (ENSCAFG00845000762) PTAR1 (ENSCAFG00845000783) APBA1 (ENSCAFG00845000845) ENTREP1 (ENSCAFG00845000882) ENSCAFG00845000920 TJP2 (ENSCAFG00845001062) FXN (ENSCAFG00845001342) PIP5K1B (ENSCAFG00845001394) TMEM252 (ENSCAFG00845001485) PGM5 (ENSCAFG00845001506) ENSCAFG00845001539 ZNG1A (ENSCAFG00845001577) DOCK8 (ENSCAFG00845001647) KANK1 (ENSCAFG00845001908) #22 DMRT1 (ENSCAFG00845001983) #23 DMRT3 (ENSCAFG00845002003) #24 DMRT2 (ENSCAFG00845002026) ENSCAFG00845002045 SMARCA2 (ENSCAFG00845002161) VLDLR (ENSCAFG00845002345) KCNV2 (ENSCAFG00845002424) PUM3 (ENSCAFG00845002440) ENSCAFG00845002474 RFX3 (ENSCAFG00845002562) ENSCAFG00845002739 GLIS3 (ENSCAFG00845002759) SLC1A1 (ENSCAFG00845002818) SPATA6L (ENSCAFG00845002856) PLPP6 (ENSCAFG00845002916) Dingo MODERN SPECIES 125 ENTREP1 (ENSCAFG00020026587) ENSCAFG00020026593 ENSCAFG00020026595 TJP2 (ENSCAFG00020026597) FXN (ENSCAFG00020026605) ENSCAFG00020026606 PIP5K1B (ENSCAFG00020026608) PABIR1 (ENSCAFG00020026613) TMEM252 (ENSCAFG00020026616) PGM5 (ENSCAFG00020026619) ENSCAFG00020026621 ENSCAFG00020026623 ENSCAFG00020026625 ENSCAFG00020026627 DOCK8 (ENSCAFG00020026637) KANK1 (ENSCAFG00020026742) #22 DMRT1 (ENSCAFG00020026750) #23 DMRT3 (ENSCAFG00020026752) #24 DMRT2 (ENSCAFG00020026753) ENSCAFG00020026759 ENSCAFG00020026766 ENSCAFG00020026802 ENSCAFG00020026863 VLDLR (ENSCAFG00020026865) KCNV2 (ENSCAFG00020026866) PUM3 (ENSCAFG00020026867) RFX3 (ENSCAFG00020026868) ENSCAFG00020026870 GLIS3 (ENSCAFG00020000104) SLC1A1 (ENSCAFG00020000361) SPATA6L (ENSCAFG00020000384) Red fox MODERN SPECIES 37 SMC5 (ENSVVUG00000003940) MAMDC2 (ENSVVUG00000004006) CUNH9orf135 (ENSVVUG00000004036) PTAR1 (ENSVVUG00000004054) ENSVVUG00000004075 APBA1 (ENSVVUG00000004105) FAM189A2 (ENSVVUG00000004164) ENSVVUG00000004192 TJP2 (ENSVVUG00000004207) FXN (ENSVVUG00000004304) PIP5K1B (ENSVVUG00000004306) TMEM252 (ENSVVUG00000004338) PGM5 (ENSVVUG00000004340) ENSVVUG00000004359 DOCK8 (ENSVVUG00000004407) KANK1 (ENSVVUG00000004494) #22 DMRT1 (ENSVVUG00000004545) #23 DMRT3 (ENSVVUG00000004555) #24 DMRT2 (ENSVVUG00000004562) ENSVVUG00000004580 ENSVVUG00000004598 VLDLR (ENSVVUG00000004925) ENSVVUG00000006514 KCNV2 (ENSVVUG00000006518) PUM3 (ENSVVUG00000006527) ENSVVUG00000006545 RFX3 (ENSVVUG00000006609) GLIS3 (ENSVVUG00000007122) SLC1A1 (ENSVVUG00000007200) SPATA6L (ENSVVUG00000007223) ENSVVUG00000007267 Felidae ANCESTRAL SPECIES 28 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00950000183123.g.a.a.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155028.q.b.e.b ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Panthera ANCESTRAL SPECIES 34 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00950000183123.g.a.a.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155028.q.b.e.b ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 Panthera_a ANCESTRAL SPECIES 35 ENSGT01100000263674 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00950000183123.g.a.a.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d lion MODERN SPECIES 13 ENSPLOG00000012666 MAMDC2 (ENSPLOG00000012728) CFAP95 (ENSPLOG00000012861) ENSPLOG00000012981 PTAR1 (ENSPLOG00000013055) APBA1 (ENSPLOG00000013238) ENTREP1 (ENSPLOG00000013369) TJP2 (ENSPLOG00000013563) FXN (ENSPLOG00000013999) PIP5K1B (ENSPLOG00000014086) TMEM252 (ENSPLOG00000014372) PGM5 (ENSPLOG00000014414) ENSPLOG00000014655 ENSPLOG00000014827 DOCK8 (ENSPLOG00000015754) KANK1 (ENSPLOG00000016894) #22 DMRT1 (ENSPLOG00000017065) #23 DMRT3 (ENSPLOG00000017150) #24 DMRT2 (ENSPLOG00000017190) SMARCA2 (ENSPLOG00000017478) ENSPLOG00000017911 VLDLR (ENSPLOG00000017962) KCNV2 (ENSPLOG00000018027) PUM3 (ENSPLOG00000018076) ENSPLOG00000018220 RFX3 (ENSPLOG00000018336) GLIS3 (ENSPLOG00000018479) SLC1A1 (ENSPLOG00000018538) SPATA6L (ENSPLOG00000018652) PLPP6 (ENSPLOG00000018812) CDC37L1 (ENSPLOG00000018840) leopard MODERN SPECIES 42 ENSPPRG00000008590 MAMDC2 (ENSPPRG00000008546) CFAP95 (ENSPPRG00000008448) PTAR1 (ENSPPRG00000008339) APBA1 (ENSPPRG00000007808) ENTREP1 (ENSPPRG00000007577) TJP2 (ENSPPRG00000007262) FXN (ENSPPRG00000006297) PIP5K1B (ENSPPRG00000006228) ENSPPRG00000005893 TMEM252 (ENSPPRG00000005826) PGM5 (ENSPPRG00000005783) ENSPPRG00000005661 ENSPPRG00000005315 DOCK8 (ENSPPRG00000003143) KANK1 (ENSPPRG00000002516) #22 DMRT1 (ENSPPRG00000002380) #23 DMRT3 (ENSPPRG00000002367) #24 DMRT2 (ENSPPRG00000002109) SMARCA2 (ENSPPRG00000001879) ENSPPRG00000001027 VLDLR (ENSPPRG00000000915) KCNV2 (ENSPPRG00000000862) PUM3 (ENSPPRG00000000809) ENSPPRG00000000748 RFX3 (ENSPPRG00000000606) GLIS3 (ENSPPRG00000000400) SLC1A1 (ENSPPRG00000000232) SPATA6L (ENSPPRG00000000218) PLPP6 (ENSPPRG00000019670) CDC37L1 (ENSPPRG00000000059) Tiger MODERN SPECIES 101 KLF9 (ENSPTIG00000021162) SMC5 (ENSPTIG00000020060) MAMDC2 (ENSPTIG00000017465) CFAP95 (ENSPTIG00000017058) PTAR1 (ENSPTIG00000015696) APBA1 (ENSPTIG00000014499) ENTREP1 (ENSPTIG00000011116) TJP2 (ENSPTIG00000018489) FXN (ENSPTIG00000017563) PIP5K1B (ENSPTIG00000014859) ENSPTIG00000013949 TMEM252 (ENSPTIG00000013552) PGM5 (ENSPTIG00000012225) ENSPTIG00000017808 DOCK8 (ENSPTIG00000008300) KANK1 (ENSPTIG00000006046) #22 DMRT1 (ENSPTIG00000005309) #23 DMRT3 (ENSPTIG00000004916) #24 DMRT2 (ENSPTIG00000003639) Cat MODERN SPECIES 244 MAMDC2 (ENSFCAG00000027053) CFAP95 (ENSFCAG00000000106) PTAR1 (ENSFCAG00000014624) APBA1 (ENSFCAG00000043283) ENTREP1 (ENSFCAG00000014622) TJP2 (ENSFCAG00000008814) FXN (ENSFCAG00000031454) PIP5K1B (ENSFCAG00000008812) ENSFCAG00000050603 TMEM252 (ENSFCAG00000008053) PGM5 (ENSFCAG00000008050) ENSFCAG00000043244 ENSFCAG00000012045 ENSFCAG00000047266 DOCK8 (ENSFCAG00000012046) KANK1 (ENSFCAG00000006458) #22 DMRT1 (ENSFCAG00000006459) #23 DMRT3 (ENSFCAG00000036847) #24 DMRT2 (ENSFCAG00000006461) SMARCA2 (ENSFCAG00000001568) ENSFCAG00000041218 VLDLR (ENSFCAG00000013257) KCNV2 (ENSFCAG00000004335) ENSFCAG00000013260 RFX3 (ENSFCAG00000012950) GLIS3 (ENSFCAG00000046401) ENSFCAG00000037557 SLC1A1 (ENSFCAG00000023590) PLPP6 (ENSFCAG00000038113) SPATA6L (ENSFCAG00000002369) CDC37L1 (ENSFCAG00000027076) Laurasiatheria_c ANCESTRAL SPECIES 11 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Equus ANCESTRAL SPECIES 37 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.m ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00410000028750 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00520000061590 ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Donkey MODERN SPECIES 15 ENSEASG00005009599 MAMDC2 (ENSEASG00005009600) CFAP95 (ENSEASG00005009601) ENSEASG00005031515 ENSEASG00005024635 APBA1 (ENSEASG00005009603) ENTREP1 (ENSEASG00005009605) TJP2 (ENSEASG00005009607) FXN (ENSEASG00005025449) PIP5K1B (ENSEASG00005009622) TMEM252 (ENSEASG00005032638) PGM5 (ENSEASG00005009626) ENSEASG00005009631 ENSEASG00005009634 DOCK8 (ENSEASG00005009734) KANK1 (ENSEASG00005010292) #22 DMRT1 (ENSEASG00005010297) #23 DMRT3 (ENSEASG00005010303) #24 DMRT2 (ENSEASG00005010307) ENSEASG00005032228 ENSEASG00005033232 ENSEASG00005010323 VLDLR (ENSEASG00005010330) KCNV2 (ENSEASG00005010348) PUM3 (ENSEASG00005010350) ENSEASG00005010361 ENSEASG00005010358 RFX3 (ENSEASG00005010402) GLIS3 (ENSEASG00005010634) SLC1A1 (ENSEASG00005010637) PLPP6 (ENSEASG00005010645) Horse MODERN SPECIES 15 APBA1 (ENSECAG00000000271) ENSECAG00000057227 ENSECAG00000051226 ENTREP1 (ENSECAG00000012524) TJP2 (ENSECAG00000016742) FXN (ENSECAG00000019174) PIP5K1B (ENSECAG00000019992) PABIR1 (ENSECAG00000003116) ENSECAG00000044520 PGM5 (ENSECAG00000010805) TMEM252 (ENSECAG00000010049) ENSECAG00000003227 ENSECAG00000014036 ENSECAG00000041352 DOCK8 (ENSECAG00000011917) KANK1 (ENSECAG00000016219) #22 DMRT1 (ENSECAG00000060160) #23 DMRT3 (ENSECAG00000023412) #24 DMRT2 (ENSECAG00000035701) ENSECAG00000047891 ENSECAG00000045647 VLDLR (ENSECAG00000021859) ENSECAG00000037169 KCNV2 (ENSECAG00000016602) PUM3 (ENSECAG00000017193) ENSECAG00000009736 RFX3 (ENSECAG00000011075) GLIS3 (ENSECAG00000020544) SLC1A1 (ENSECAG00000010935) SPATA6L (ENSECAG00000021902) PLPP6 (ENSECAG00000023969) Chiroptera ANCESTRAL SPECIES 40 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d ENSGT00940000155120 Megabat MODERN SPECIES 3896 DOCK8 (ENSPVAG00000014831) KANK1 (ENSPVAG00000014838) #22 Microchiroptera ANCESTRAL SPECIES 36 ENSGT00940000160905 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00940000156639 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d ENSGT00940000155120 Microbat MODERN SPECIES 1274 FXN (ENSMLUG00000016443) ENSMLUG00000026887 ENSMLUG00000022332 PIP5K1B (ENSMLUG00000017346) PABIR1 (ENSMLUG00000029695) TMEM252 (ENSMLUG00000012853) PGM5 (ENSMLUG00000012848) ENSMLUG00000014374 ENSMLUG00000014379 DOCK8 (ENSMLUG00000016819) KANK1 (ENSMLUG00000001345) #22 Greater horseshoe bat MODERN SPECIES 3 TRPM3 (ENSRFEG00010008094) KLF9 (ENSRFEG00010007946) SMC5 (ENSRFEG00010007849) MAMDC2 (ENSRFEG00010007687) CFAP95 (ENSRFEG00010007629) PTAR1 (ENSRFEG00010007537) APBA1 (ENSRFEG00010007458) ENTREP1 (ENSRFEG00010007317) TJP2 (ENSRFEG00010007216) PIP5K1B (ENSRFEG00010006963) TMEM252 (ENSRFEG00010006856) PGM5 (ENSRFEG00010006806) ENSRFEG00010006757 ENSRFEG00010006573 DOCK8 (ENSRFEG00010006288) KANK1 (ENSRFEG00010006153) #22 DMRT1 (ENSRFEG00010006049) #23 DMRT3 (ENSRFEG00010006020) #24 DMRT2 (ENSRFEG00010005950) SMARCA2 (ENSRFEG00010005719) VLDLR (ENSRFEG00010005438) KCNV2 (ENSRFEG00010005355) ENSRFEG00010005315 ENSRFEG00010005258 RFX3 (ENSRFEG00010005210) GLIS3 (ENSRFEG00010005187) SLC1A1 (ENSRFEG00010005159) ENSRFEG00010005145 PLPP6 (ENSRFEG00010005138) SPATA6L (ENSRFEG00010005120) CDC37L1 (ENSRFEG00010015324) Eulipotyphla ANCESTRAL SPECIES ENSGT00940000154886.a.a #22 Hedgehog MODERN SPECIES 1035 KANK1 (ENSEEUG00000002334) #22 Common shrew MODERN SPECIES 619 KANK1 (ENSSARG00000006671) #22 Atlantogenata ANCESTRAL SPECIES 68 ENSGT00390000005811 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d ENSGT00940000155120 Xenarthra ANCESTRAL SPECIES 516 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a Sloth MODERN SPECIES 806 KANK1 (ENSCHOG00000002640) #22 Armadillo MODERN SPECIES 1645 TMEM252 (ENSDNOG00000011016) PGM5 (ENSDNOG00000010529) ENSDNOG00000037709 ENSDNOG00000034664 DOCK8 (ENSDNOG00000002938) ENSDNOG00000041022 ENSDNOG00000034702 KANK1 (ENSDNOG00000015638) #22 DMRT1 (ENSDNOG00000005457) #23 DMRT3 (ENSDNOG00000004047) #24 DMRT2 (ENSDNOG00000019464) Afrotheria ANCESTRAL SPECIES 145 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896.n ENSGT00940000156896.m ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Tenrec MODERN SPECIES 1016 ENSETEG00000002917 #22 Afrotheria_a ANCESTRAL SPECIES 145 ENSGT00940000156639 ENSGT01050000248464 ENSGT00390000015476.d.b ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b ENSGT00940000156896.n ENSGT00940000156896.m ENSGT00900000143153 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00940000160907 ENSGT00390000013443.d Elephant DUPLICATION Elephant MODERN SPECIES 593 ENSLAFG00000030532 ENSLAFG00000031361 PIP5K1B (ENSLAFG00000007792) ENSLAFG00000027844 PABIR1 (ENSLAFG00000016843) ENSLAFG00000029981 TMEM252 (ENSLAFG00000015792) PGM5 (ENSLAFG00000015785) ENSLAFG00000006679 DOCK8 (ENSLAFG00000010626) ENSLAFG00000010633 #22 ENSLAFG00000031278 #22 ENSLAFG00000010638 #23 DMRT3 (ENSLAFG00000028125) #24 DMRT2 (ENSLAFG00000008510) SMARCA2 (ENSLAFG00000014061) VLDLR (ENSLAFG00000015211) KCNV2 (ENSLAFG00000017292) PUM3 (ENSLAFG00000017341) RFX3 (ENSLAFG00000021602) ENSLAFG00000031654 ENSLAFG00000029971 ENSLAFG00000026125 SLC1A1 (ENSLAFG00000001120) PLPP6 (ENSLAFG00000001123) SPATA6L (ENSLAFG00000001121) CDC37L1 (ENSLAFG00000001125) Elephant MODERN SPECIES 593 ENSLAFG00000030532 ENSLAFG00000031361 PIP5K1B (ENSLAFG00000007792) ENSLAFG00000027844 PABIR1 (ENSLAFG00000016843) ENSLAFG00000029981 TMEM252 (ENSLAFG00000015792) PGM5 (ENSLAFG00000015785) ENSLAFG00000006679 DOCK8 (ENSLAFG00000010626) ENSLAFG00000010633 #22 ENSLAFG00000031278 #22 ENSLAFG00000010638 #23 DMRT3 (ENSLAFG00000028125) #24 DMRT2 (ENSLAFG00000008510) SMARCA2 (ENSLAFG00000014061) VLDLR (ENSLAFG00000015211) KCNV2 (ENSLAFG00000017292) PUM3 (ENSLAFG00000017341) RFX3 (ENSLAFG00000021602) ENSLAFG00000031654 ENSLAFG00000029971 ENSLAFG00000026125 SLC1A1 (ENSLAFG00000001120) PLPP6 (ENSLAFG00000001123) SPATA6L (ENSLAFG00000001121) Hyrax MODERN SPECIES 742 KANK1 (ENSPCAG00000002348) #22 Marsupialia ANCESTRAL SPECIES 6 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000164995 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00940000154259 ENSGT00940000162445 ENSGT00940000156061 ENSGT00940000158226 ENSGT01050000244941.A ENSGT00550000074857 ENSGT00940000160271 ENSGT00390000007773 ENSGT00940000155421.b Marsupialia_b ANCESTRAL SPECIES 11 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00940000154259.n ENSGT00940000162445 ENSGT00940000156061 ENSGT00940000158226 ENSGT01050000244941.A ENSGT00550000074857 ENSGT00940000160271 ENSGT00390000007773 ENSGT00940000155421.b Diprotodontia ANCESTRAL SPECIES 21 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00940000154259.n ENSGT00940000162445 ENSGT00940000156061 ENSGT00940000158226 ENSGT01050000244941.A ENSGT00550000074857 ENSGT00940000160271 ENSGT00390000007773 ENSGT00940000155421.b Diprotodontia_a ANCESTRAL SPECIES 17 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811.a ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000163353 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00940000154259.n ENSGT00940000162445 ENSGT00940000156061 ENSGT00940000158226 ENSGT01050000244941.A ENSGT00550000074857 ENSGT00940000160271 ENSGT00390000007773 ENSGT00940000155421.b Common wonbat MODERN SPECIES 1066 KLF9 (ENSVURG00010007188) SMC5 (ENSVURG00010007199) MAMDC2 (ENSVURG00010007219) CFAP95 (ENSVURG00010007235) PTAR1 (ENSVURG00010007243) APBA1 (ENSVURG00010007265) ENTREP1 (ENSVURG00010007290) TJP2 (ENSVURG00010007350) ENSVURG00010007444 PIP5K1B (ENSVURG00010007456) ENSVURG00010007484 PGM5 (ENSVURG00010007494) ENSVURG00010007501 ENSVURG00010007512 DOCK8 (ENSVURG00010007566) KANK1 (ENSVURG00010007648) #22 DMRT1 (ENSVURG00010007673) #23 DMRT3 (ENSVURG00010007680) #24 ENSVURG00010007684 DMRT2 (ENSVURG00010007688) SMARCA2 (ENSVURG00010007727) VLDLR (ENSVURG00010008117) ENSVURG00010008151 ENSVURG00010008158 ENSVURG00010008167 SVEP1 (ENSVURG00010008182) MUSK (ENSVURG00010008274) LPAR1 (ENSVURG00010008572) SMC2 (ENSVURG00010008589) ENSVURG00010008619 ENSVURG00010008671 koala MODERN SPECIES 92 ENSPCIG00000010578 MAMDC2 (ENSPCIG00000010583) ENSPCIG00000035736 PTAR1 (ENSPCIG00000024714) APBA1 (ENSPCIG00000030327) ENTREP1 (ENSPCIG00000030326) TJP2 (ENSPCIG00000030318) ENSPCIG00000030316 PIP5K1B (ENSPCIG00000030314) ENSPCIG00000030312 PGM5 (ENSPCIG00000030310) ENSPCIG00000030308 ENSPCIG00000031430 ENSPCIG00000035585 ENSPCIG00000030200 KANK1 (ENSPCIG00000030084) #22 ENSPCIG00000030081 DMRT1 (ENSPCIG00000030080) #23 DMRT3 (ENSPCIG00000030078) #24 DMRT2 (ENSPCIG00000030077) SMARCA2 (ENSPCIG00000015658) ENSPCIG00000015665 VLDLR (ENSPCIG00000010606) KCNV2 (ENSPCIG00000010599) ENSPCIG00000010598 ENSPCIG00000032183 SVEP1 (ENSPCIG00000015236) MUSK (ENSPCIG00000015083) LPAR1 (ENSPCIG00000015072) SMC2 (ENSPCIG00000026558) ABCC1 (ENSPCIG00000016945) Wallaby MODERN SPECIES 1651 KANK1 (ENSMEUG00000014466) #22 Tasmanian devil MODERN SPECIES C9orf85 (ENSSHAG00000001633) ENSSHAG00000029743 GDA (ENSSHAG00000001275) ZFAND5 (ENSSHAG00000027724) ENSSHAG00000001209 ENSSHAG00000001019 ENSSHAG00000006135 ENSSHAG00000023898 ENSSHAG00000001482 ENSSHAG00000031308 NFIL3 (ENSSHAG00000030770) ENSSHAG00000025064 ENSSHAG00000001579 ENSSHAG00000029291 ENSSHAG00000000407 ENSSHAG00000005856 #22 DMRT1 (ENSSHAG00000006920) #23 DMRT3 (ENSSHAG00000008620) #24 DMRT2 (ENSSHAG00000009329) SMARCA2 (ENSSHAG00000007884) VLDLR (ENSSHAG00000001123) ENSSHAG00000025886 ENSSHAG00000006739 ENSSHAG00000023521 SVEP1 (ENSSHAG00000027165) MUSK (ENSSHAG00000001254) ENSSHAG00000005546 ENSSHAG00000004265 ENSSHAG00000005536 MYH11 (ENSSHAG00000007381) NDE1 (ENSSHAG00000008432) Opossum MODERN SPECIES 5 ENSMODG00000027611 PTAR1 (ENSMODG00000002821) APBA1 (ENSMODG00000002848) ENTREP1 (ENSMODG00000002869) ENSMODG00000002938 ENSMODG00000002952 PIP5K1B (ENSMODG00000003063) TMEM252 (ENSMODG00000003092) PGM5 (ENSMODG00000003131) ENSMODG00000024854 ENSMODG00000044468 ENSMODG00000039961 ENSMODG00000044962 ENSMODG00000045417 ENSMODG00000003306 KANK1 (ENSMODG00000003387) #22 DMRT1 (ENSMODG00000003401) #23 DMRT3 (ENSMODG00000003407) #24 DMRT2 (ENSMODG00000003430) ENSMODG00000024673 ENSMODG00000024839 SMARCA2 (ENSMODG00000003578) ENSMODG00000041801 VLDLR (ENSMODG00000003620) KCNV2 (ENSMODG00000003631) ENSMODG00000049910 ENSMODG00000003635 SVEP1 (ENSMODG00000003939) MUSK (ENSMODG00000003983) LPAR1 (ENSMODG00000003999) ENSMODG00000048116 Platypus MODERN SPECIES 88 TRPM3 (ENSOANG00000005022) KLF9 (ENSOANG00000005024) ENSOANG00000005025 MAMDC2 (ENSOANG00000005026) ENSOANG00000005027 PTAR1 (ENSOANG00000005028) APBA1 (ENSOANG00000002093) ENTREP1 (ENSOANG00000003151) TJP2 (ENSOANG00000013266) PIP5K1B (ENSOANG00000013264) ENSOANG00000028420 PGM5 (ENSOANG00000012517) ENSOANG00000040009 ENSOANG00000012519 DOCK8 (ENSOANG00000044143) KANK1 (ENSOANG00000008293) #22 DMRT1 (ENSOANG00000036834) #23 DMRT3 (ENSOANG00000008295) #24 DMRT2 (ENSOANG00000008296) ENSOANG00000008297 SMARCA2 (ENSOANG00000008299) VLDLR (ENSOANG00000014993) KCNV2 (ENSOANG00000014994) PUM3 (ENSOANG00000014995) ENSOANG00000043031 RFX3 (ENSOANG00000014996) GLIS3 (ENSOANG00000014997) SLC1A1 (ENSOANG00000013192) ENSOANG00000039420 ENSOANG00000036739 CDC37L1 (ENSOANG00000001511) Sauria ANCESTRAL SPECIES 5 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Archelosauria ANCESTRAL SPECIES 7 ENSGT00940000156117 ENSGT00390000014593 ENSGT00950000185009 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00910000144227.t ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b Archosauria ANCESTRAL SPECIES 31 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00950000185009 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00910000144227.t ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d Australian saltwater crocodile DUPLICATION Australian saltwater crocodile MODERN SPECIES 67 ENSCPRG00005005785 MAMDC2 (ENSCPRG00005005729) CFAP95 (ENSCPRG00005005710) ENSCPRG00005005695 PTAR1 (ENSCPRG00005005647) ENSCPRG00005005637 APBA1 (ENSCPRG00005005588) ENTREP1 (ENSCPRG00005005585) ENSCPRG00005005571 FXN (ENSCPRG00005005552) PIP5K1B (ENSCPRG00005005542) TMEM252 (ENSCPRG00005005520) PGM5 (ENSCPRG00005005087) ENSCPRG00005005028 DOCK8 (ENSCPRG00005004968) KANK1 (ENSCPRG00005004939) #22 DMRT1 (ENSCPRG00005004893) #23 DMRT3 (ENSCPRG00005004879) #24 DMRT2 (ENSCPRG00005004868) SMARCA2 (ENSCPRG00005004803) ENSCPRG00005004774 VLDLR (ENSCPRG00005004758) KCNV2 (ENSCPRG00005004751) PUM3 (ENSCPRG00005004547) ENSCPRG00005004519 RFX3 (ENSCPRG00005004493) GLIS3 (ENSCPRG00005004466) SLC1A1 (ENSCPRG00005004424) SPATA6L (ENSCPRG00005004407) CDC37L1 (ENSCPRG00005004396) AK3 (ENSCPRG00005004395) Australian saltwater crocodile MODERN SPECIES 62 ENSCPRG00005013208 ENSCPRG00005013206 ENSCPRG00005013203 ENSCPRG00005013201 PARP2 (ENSCPRG00005013193) ENSCPRG00005013185 ENSCPRG00005013163 OSGEP (ENSCPRG00005013077) APEX1 (ENSCPRG00005013064) PIP4P1 (ENSCPRG00005013059) ENSCPRG00005013055 RNASE4 (ENSCPRG00005013052) ENSCPRG00005013048 ANGPTL4 (ENSCPRG00005013045) ENSCPRG00005013044 ENSCPRG00005013042 #22 ENSCPRG00005013036 NDUFA7 (ENSCPRG00005013033) ENSCPRG00005013031 ENSCPRG00005013029 ENSCPRG00005013027 ENSCPRG00005013024 POLE4 (ENSCPRG00005013023) ENSCPRG00005013005 ELAVL1 (ENSCPRG00005012995) ZFR2 (ENSCPRG00005012851) MATK (ENSCPRG00005012763) ENSCPRG00005012745 ENSCPRG00005012742 ENSCPRG00005012729 MRPL54 (ENSCPRG00005012722) Aves ANCESTRAL SPECIES 45 ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 African ostrich DUPLICATION African ostrich MODERN SPECIES 707 ENSSCUG00000015638 TSTD2 (ENSSCUG00000015657) TMOD1 (ENSSCUG00000015661) TDRD7 (ENSSCUG00000015669) DGKQ (ENSSCUG00000015680) ACO1 (ENSSCUG00000015695) RIGI (ENSSCUG00000015734) TMEM252 (ENSSCUG00000015786) PGM5 (ENSSCUG00000015787) ENSSCUG00000015790 DOCK8 (ENSSCUG00000015802) KANK1 (ENSSCUG00000015823) #22 DMRT1 (ENSSCUG00000015827) #23 African ostrich MODERN SPECIES 436 ENSSCUG00000010130 ANGPTL4 (ENSSCUG00000010129) ENSSCUG00000010128 #22 NDUFA7 (ENSSCUG00000010127) ENSSCUG00000010126 ENSSCUG00000010125 ENSSCUG00000010124 ENSSCUG00000010123 ENSSCUG00000010122 ENSSCUG00000010121 ELAVL1 (ENSSCUG00000010120) MATK (ENSSCUG00000010118) ENSSCUG00000010117 ENSSCUG00000010116 ENSSCUG00000010115 APBA3 (ENSSCUG00000010114) TJP3 (ENSSCUG00000010113) PIP5K1C (ENSSCUG00000010111) Neognathae ANCESTRAL SPECIES 12 ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105 ENSGT00940000155389.d ENSGT00940000155389.c ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a Neognathae_b ANCESTRAL SPECIES 5 ENSGT00940000153288.a.b.a.a ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105.n.b ENSGT00940000155389.d.a ENSGT00940000155389.c ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a Passeriformes ANCESTRAL SPECIES 7 ENSGT00940000153288.a.b.a.a ENSGT00940000153288.a.b.a.b ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105.n.b ENSGT00940000155389.d.a ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000162777.a.a.a.a ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a Great tit MODERN SPECIES 642 UTP15 (ENSPMJG00000016171) ANKRA2 (ENSPMJG00000016172) ENSPMJG00000016174 ENSPMJG00000016175 TMEM174 (ENSPMJG00000016176) TMEM171 (ENSPMJG00000016177) FCHO2 (ENSPMJG00000016179) TNPO1 (ENSPMJG00000016180) ZNF366 (ENSPMJG00000016182) MRPS27 (ENSPMJG00000016185) MAP1B (ENSPMJG00000016186) PGM5 (ENSPMJG00000016187) ENSPMJG00000016188 ENSPMJG00000016189 DOCK8 (ENSPMJG00000016190) KANK1 (ENSPMJG00000016191) #22 DMRT1 (ENSPMJG00000016192) #23 DMRT2 (ENSPMJG00000016193) SMARCA2 (ENSPMJG00000016196) VLDLR (ENSPMJG00000016197) KCNV2 (ENSPMJG00000016198) PUM3 (ENSPMJG00000016199) ENSPMJG00000016200 RFX3 (ENSPMJG00000016201) GLIS3 (ENSPMJG00000016202) SLC1A1 (ENSPMJG00000016203) ENSPMJG00000016204 ENSPMJG00000016205 CDC37L1 (ENSPMJG00000016206) AK3 (ENSPMJG00000016207) RCL1 (ENSPMJG00000016208) Passeriformes_d ANCESTRAL SPECIES 6 ENSGT00940000157156 ENSGT00940000153288.a.b.a.a ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105.n.b ENSGT00940000155389.d.a ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000162777.a.a.a.a ENSGT01050000244879.a.a.b.e ENSGT01100000265023 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 Passeriformes_g ANCESTRAL SPECIES 7 ENSGT00940000157156 ENSGT00940000153288.a.b.a.a ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105.n.b ENSGT00940000155389.d.a ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000162777.a.a.a.a ENSGT01050000244879.a.a.b.e ENSGT01100000265023 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00940000155319.g.b.a.b ENSGT00960000189358 Passeroidea ANCESTRAL SPECIES 23 ENSGT00940000157156 ENSGT00940000153288.a.b.a.a ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105.n.b ENSGT00940000155389.d.a ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000162777.a.a.a.a ENSGT01050000244879.a.a.b.e ENSGT01100000265023 ENSGT00940000156896 ENSGT00940000155397.b ENSGT00940000155319.g.b.a.b ENSGT00960000189358 Common canary MODERN SPECIES 25 UTP15 (ENSSCAG00000004749) ANKRA2 (ENSSCAG00000004745) BTF3 (ENSSCAG00000004740) TMEM174 (ENSSCAG00000004734) TMEM171 (ENSSCAG00000004732) FCHO2 (ENSSCAG00000004714) ENSSCAG00000004350 ZNF366 (ENSSCAG00000004281) PTCD2 (ENSSCAG00000004277) MRPS27 (ENSSCAG00000004269) ENSSCAG00000004262 TMEM252 (ENSSCAG00000004252) PGM5 (ENSSCAG00000004248) ENSSCAG00000004163 DOCK8 (ENSSCAG00000003379) KANK1 (ENSSCAG00000003206) #22 ENSSCAG00000003201 DMRT1 (ENSSCAG00000003198) #23 DMRT3 (ENSSCAG00000003195) #24 DMRT2 (ENSSCAG00000003191) SMARCA2 (ENSSCAG00000003181) VLDLR (ENSSCAG00000003171) KCNV2 (ENSSCAG00000003167) PUM3 (ENSSCAG00000003162) ENSSCAG00000003143 ENSSCAG00000003133 ENSSCAG00000003109 PTPRD (ENSSCAG00000002170) TYRP1 (ENSSCAG00000001949) MPDZ (ENSSCAG00000001857) NFIB (ENSSCAG00000001799) Zebra finch MODERN SPECIES 104 ANKRA2 (ENSTGUG00000005875) BTF3 (ENSTGUG00000005853) ENSTGUG00000020640 TMEM174 (ENSTGUG00000005844) TMEM171 (ENSTGUG00000005840) FCHO2 (ENSTGUG00000005780) TNPO1 (ENSTGUG00000005729) ZNF366 (ENSTGUG00000005717) PTCD2 (ENSTGUG00000005705) MRPS27 (ENSTGUG00000005691) MAP1B (ENSTGUG00000005669) TMEM252 (ENSTGUG00000005666) PGM5 (ENSTGUG00000005644) ENSTGUG00000005631 DOCK8 (ENSTGUG00000005550) KANK1 (ENSTGUG00000005531) #22 DMRT1 (ENSTGUG00000005524) #23 DMRT3 (ENSTGUG00000005521) #24 DMRT2 (ENSTGUG00000005515) SMARCA2 (ENSTGUG00000005460) VLDLR (ENSTGUG00000005386) ENSTGUG00000005381 KCNV2 (ENSTGUG00000018853) PUM3 (ENSTGUG00000005339) ENSTGUG00000005327 RFX3 (ENSTGUG00000005287) ENSTGUG00000022949 ENSTGUG00000024012 GLIS3 (ENSTGUG00000005266) SLC1A1 (ENSTGUG00000005214) ENSTGUG00000005203 Medium ground finch MODERN SPECIES 165 ZNF366 (ENSGFOG00000011222) PTCD2 (ENSGFOG00000011214) MRPS27 (ENSGFOG00000011203) ENSGFOG00000011197 ENSGFOG00000011192 PGM5 (ENSGFOG00000011183) ENSGFOG00000011177 ENSGFOG00000011169 ENSGFOG00000011163 ENSGFOG00000011159 KANK1 (ENSGFOG00000011149) #22 DMRT2 (ENSGFOG00000011147) SMARCA2 (ENSGFOG00000011122) VLDLR (ENSGFOG00000009041) KCNV2 (ENSGFOG00000008864) PUM3 (ENSGFOG00000008804) ENSGFOG00000008784 ENSGFOG00000008755 Flycatcher MODERN SPECIES 561 UTP15 (ENSFALG00000010206) ANKRA2 (ENSFALG00000010222) BTF3 (ENSFALG00000010233) ENSFALG00000021806 TMEM174 (ENSFALG00000010257) TNPO1 (ENSFALG00000010292) ZNF366 (ENSFALG00000010297) PTCD2 (ENSFALG00000010299) MRPS27 (ENSFALG00000010306) ENSFALG00000010312 ENSFALG00000025792 ENSFALG00000023216 ENSFALG00000010321 ENSFALG00000010329 DOCK8 (ENSFALG00000010346) KANK1 (ENSFALG00000010385) #22 DMRT1 (ENSFALG00000010388) #23 DMRT3 (ENSFALG00000010391) #24 DMRT2 (ENSFALG00000010393) ENSFALG00000023612 SMARCA2 (ENSFALG00000010416) VLDLR (ENSFALG00000010477) KCNV2 (ENSFALG00000010508) PUM3 (ENSFALG00000010509) ENSFALG00000010512 RFX3 (ENSFALG00000010515) ENSFALG00000027595 GLIS3 (ENSFALG00000010519) SLC1A1 (ENSFALG00000010522) ENSFALG00000014597 ENSFALG00000010526 Neognathae_c ANCESTRAL SPECIES 2 ENSGT00940000153288.a.a ENSGT00940000157140.b.a.b.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105.n.b ENSGT00940000155389.d.a ENSGT00940000155389.c ENSGT00940000155498.h ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a ENSGT00940000155640 Kakapo DUPLICATION Kakapo MODERN SPECIES 19 ENSSHBG00005020665 TMEM174 (ENSSHBG00005020659) TMEM171 (ENSSHBG00005020656) ENSSHBG00005020644 ENSSHBG00005020635 ENSSHBG00005020632 ENSSHBG00005020631 PTCD2 (ENSSHBG00005020628) MRPS27 (ENSSHBG00005020624) ENSSHBG00005020612 ENSSHBG00005020611 TMEM252 (ENSSHBG00005020607) PGM5 (ENSSHBG00005020602) ENSSHBG00005020597 DOCK8 (ENSSHBG00005020306) ENSSHBG00005020200 #22 ENSSHBG00005020196 #22 DMRT1 (ENSSHBG00005020193) #23 DMRT3 (ENSSHBG00005020188) #24 DMRT2 (ENSSHBG00005020185) SMARCA2 (ENSSHBG00005017989) VLDLR (ENSSHBG00005017636) KCNV2 (ENSSHBG00005017626) PUM3 (ENSSHBG00005017598) ENSSHBG00005017578 ENSSHBG00005017571 GLIS3 (ENSSHBG00005017563) AK3 (ENSSHBG00005017556) CDC37L1 (ENSSHBG00005017553) SLC1A1 (ENSSHBG00005017548) RCL1 (ENSSHBG00005017541) Kakapo MODERN SPECIES 19 TMEM174 (ENSSHBG00005020659) TMEM171 (ENSSHBG00005020656) ENSSHBG00005020644 ENSSHBG00005020635 ENSSHBG00005020632 ENSSHBG00005020631 PTCD2 (ENSSHBG00005020628) MRPS27 (ENSSHBG00005020624) ENSSHBG00005020612 ENSSHBG00005020611 TMEM252 (ENSSHBG00005020607) PGM5 (ENSSHBG00005020602) ENSSHBG00005020597 DOCK8 (ENSSHBG00005020306) ENSSHBG00005020200 #22 ENSSHBG00005020196 #22 DMRT1 (ENSSHBG00005020193) #23 DMRT3 (ENSSHBG00005020188) #24 DMRT2 (ENSSHBG00005020185) SMARCA2 (ENSSHBG00005017989) VLDLR (ENSSHBG00005017636) KCNV2 (ENSSHBG00005017626) PUM3 (ENSSHBG00005017598) ENSSHBG00005017578 ENSSHBG00005017571 GLIS3 (ENSSHBG00005017563) AK3 (ENSSHBG00005017556) CDC37L1 (ENSSHBG00005017553) SLC1A1 (ENSSHBG00005017548) RCL1 (ENSSHBG00005017541) JAK2 (ENSSHBG00005017499) Golden eagle DUPLICATION Golden eagle MODERN SPECIES 91 FOXD1 (ENSACCG00020016825) TMEM174 (ENSACCG00020016823) TMEM171 (ENSACCG00020016822) FCHO2 (ENSACCG00020016814) TNPO1 (ENSACCG00020016800) ZNF366 (ENSACCG00020016792) PTCD2 (ENSACCG00020016781) MRPS27 (ENSACCG00020016774) ENSACCG00020016767 ENSACCG00020016763 TMEM252 (ENSACCG00020016759) PGM5 (ENSACCG00020016754) ENSACCG00020016750 DOCK8 (ENSACCG00020016450) ENSACCG00020014971 #22 ENSACCG00020014951 #22 DMRT1 (ENSACCG00020014930) #23 DMRT3 (ENSACCG00020014910) #24 DMRT2 (ENSACCG00020014901) SMARCA2 (ENSACCG00020014838) VLDLR (ENSACCG00020014749) KCNV2 (ENSACCG00020014716) PUM3 (ENSACCG00020014700) ENSACCG00020014683 RFX3 (ENSACCG00020014653) GLIS3 (ENSACCG00020014613) SLC1A1 (ENSACCG00020014593) CDC37L1 (ENSACCG00020014575) AK3 (ENSACCG00020014563) RCL1 (ENSACCG00020014540) JAK2 (ENSACCG00020014493) Golden eagle MODERN SPECIES 91 ENSACCG00020016826 FOXD1 (ENSACCG00020016825) TMEM174 (ENSACCG00020016823) TMEM171 (ENSACCG00020016822) FCHO2 (ENSACCG00020016814) TNPO1 (ENSACCG00020016800) ZNF366 (ENSACCG00020016792) PTCD2 (ENSACCG00020016781) MRPS27 (ENSACCG00020016774) ENSACCG00020016767 ENSACCG00020016763 TMEM252 (ENSACCG00020016759) PGM5 (ENSACCG00020016754) ENSACCG00020016750 DOCK8 (ENSACCG00020016450) ENSACCG00020014971 #22 ENSACCG00020014951 #22 DMRT1 (ENSACCG00020014930) #23 DMRT3 (ENSACCG00020014910) #24 DMRT2 (ENSACCG00020014901) SMARCA2 (ENSACCG00020014838) VLDLR (ENSACCG00020014749) KCNV2 (ENSACCG00020014716) PUM3 (ENSACCG00020014700) ENSACCG00020014683 RFX3 (ENSACCG00020014653) GLIS3 (ENSACCG00020014613) SLC1A1 (ENSACCG00020014593) CDC37L1 (ENSACCG00020014575) AK3 (ENSACCG00020014563) RCL1 (ENSACCG00020014540) Galloanserae ANCESTRAL SPECIES 11 ENSGT00940000153288.a.b.a.a ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105 ENSGT00940000155389.d ENSGT00940000155389.c ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a ENSGT00940000155640 Anatidae ANCESTRAL SPECIES 20 ENSGT00940000161645.a ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105 ENSGT00940000155389.d.c ENSGT00940000155389.c ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a ENSGT00940000155640 ENSGT00940000154396.a Pink-footed goose MODERN SPECIES 250 TMEM252 (ENSABRG00000011071) PGM5 (ENSABRG00000011072) ENSABRG00000011081 DOCK8 (ENSABRG00000011565) KANK1 (ENSABRG00000017500) #22 DMRT3 (ENSABRG00000017516) #24 DMRT2 (ENSABRG00000017525) Duck MODERN SPECIES 4281 TMEM174 (ENSAPLG00000019942) TMEM171 (ENSAPLG00000009115) FCHO2 (ENSAPLG00000009230) TNPO1 (ENSAPLG00000009619) ENSAPLG00000022145 ZNF366 (ENSAPLG00000010278) ENSAPLG00000019695 MRPS27 (ENSAPLG00000010577) MAP1B (ENSAPLG00000030918) PGM5 (ENSAPLG00000011043) TMEM252 (ENSAPLG00000010990) ENSAPLG00000012182 ENSAPLG00000025062 ENSAPLG00000017480 ENSAPLG00000012724 KANK1 (ENSAPLG00000020411) #22 DMRT3 (ENSAPLG00000013743) #24 DMRT2 (ENSAPLG00000013872) SMARCA2 (ENSAPLG00000013873) ENSAPLG00000015474 KCNV2 (ENSAPLG00000018126) PUM3 (ENSAPLG00000002920) ENSAPLG00000019362 RFX3 (ENSAPLG00000011096) GLIS3 (ENSAPLG00000014844) SLC1A1 (ENSAPLG00000015022) CDC37L1 (ENSAPLG00000006614) AK3 (ENSAPLG00000006356) RCL1 (ENSAPLG00000006031) JAK2 (ENSAPLG00000004748) ENSAPLG00000011419 Phasianidae DUPLICATION Phasianidae DUPLICATION Phasianidae ANCESTRAL SPECIES 5 ENSGT00940000153288.a.b.a.b ENSGT00940000153288.a.b.a.a ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105 ENSGT00940000155389.d ENSGT00940000155389.c ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876.e.a ENSGT00940000154886.a.a.db.a #22 ENSGT00940000154886.a.a.db.b #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a ENSGT00940000155640 Japanese quail MODERN SPECIES 699 BTF3 (ENSCJPG00005002024) TMEM174 (ENSCJPG00005002042) TMEM171 (ENSCJPG00005002046) ENSCJPG00005002050 ENSCJPG00005002058 ENSCJPG00005002062 ENSCJPG00005002070 ZNF366 (ENSCJPG00005002079) PTCD2 (ENSCJPG00005002087) MRPS27 (ENSCJPG00005002094) MAP1B (ENSCJPG00005002102) TMEM252 (ENSCJPG00005002105) PGM5 (ENSCJPG00005002107) ENSCJPG00005002115 DOCK8 (ENSCJPG00005002158) KANK1 (ENSCJPG00005002171) #22 DMRT1 (ENSCJPG00005002189) #23 DMRT3 (ENSCJPG00005002191) #24 DMRT2 (ENSCJPG00005002194) SMARCA2 (ENSCJPG00005002199) VLDLR (ENSCJPG00005002212) KCNV2 (ENSCJPG00005003166) PUM3 (ENSCJPG00005003170) RFX3 (ENSCJPG00005003180) GLIS3 (ENSCJPG00005003188) SLC1A1 (ENSCJPG00005003195) CDC37L1 (ENSCJPG00005003200) AK3 (ENSCJPG00005003204) RCL1 (ENSCJPG00005003205) JAK2 (ENSCJPG00005003214) ENSCJPG00005003229 Phasianidae_b ANCESTRAL SPECIES 5 ENSGT00390000004228 ENSGT00940000157156 ENSGT00940000153288.a.b.a.b ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105 ENSGT00940000155389.d ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876.e.a ENSGT00940000154886.a.a.db.a #22 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a ENSGT00940000155640 ENSGT00940000154396.a ENSGT00940000161373 Turkey MODERN SPECIES 1299 ENSMGAG00000022603 ENSMGAG00000001400 ENSMGAG00000021702 FAM169A (ENSMGAG00000003916) ENSMGAG00000005446 GCNT4 (ENSMGAG00000004933) TMEM174 (ENSMGAG00000004988) TMEM171 (ENSMGAG00000004961) ENSMGAG00000004969 ENSMGAG00000019697 TNPO1 (ENSMGAG00000022497) ZNF366 (ENSMGAG00000005028) MRPS27 (ENSMGAG00000004213) ENSMGAG00000018227 ENSMGAG00000004723 ENSMGAG00000005094 #22 ENSMGAG00000022563 ENSMGAG00000005034 ENSMGAG00000022224 ENSMGAG00000005135 ENSMGAG00000018973 ENSMGAG00000017142 ENSMGAG00000020678 ENSMGAG00000019468 #22 ENSMGAG00000005156 #23 ENSMGAG00000021756 ENSMGAG00000016103 ENSMGAG00000002255 KCNV2 (ENSMGAG00000001039) VLDLR (ENSMGAG00000003673) ENSMGAG00000016991 Chicken MODERN SPECIES 131 ANKRA2 (ENSGALG00010011774) BTF3 (ENSGALG00010010447) TMEM174 (ENSGALG00010012023) TMEM171 (ENSGALG00010012087) ENSGALG00010012110 FCHO2 (ENSGALG00010013297) TNPO1 (ENSGALG00010010186) ZNF366 (ENSGALG00010012008) PTCD2 (ENSGALG00010011572) MRPS27 (ENSGALG00010011649) MAP1B (ENSGALG00010011681) TMEM252 (ENSGALG00010011444) PGM5 (ENSGALG00010011887) CBWD1 (ENSGALG00010011287) DOCK8 (ENSGALG00010011311) KANK1 (ENSGALG00010011351) #22 DMRT1 (ENSGALG00010011437) #24 ENSGALG00010011462 DMRT2 (ENSGALG00010011482) SMARCA2 (ENSGALG00010011808) VLDLR (ENSGALG00010011837) KCNV2 (ENSGALG00010010198) PUM3 (ENSGALG00010011384) RFX3 (ENSGALG00010011873) GLIS3 (ENSGALG00010010147) SLC1A1 (ENSGALG00010011937) CDC37L1 (ENSGALG00010011133) AK3 (ENSGALG00010011143) RCL1 (ENSGALG00010011222) JAK2 (ENSGALG00010012833) RLN3 (ENSGALG00010012847) Phasianidae ANCESTRAL SPECIES 5 ENSGT00940000153288.a.b.a.a ENSGT00390000004161 ENSGT00390000017024 ENSGT00940000157105 ENSGT00940000155389.d ENSGT00940000155389.c ENSGT00940000155498 ENSGT00390000009329 ENSGT00390000007246 ENSGT00940000155897.mb.a ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876.e.a ENSGT00940000154886.a.a.db.a #22 ENSGT00940000154886.a.a.db.b #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT01050000244879.a.a.b.e ENSGT00940000156896 ENSGT00940000155397.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a ENSGT00940000155640 ENSGT00940000154396.a Phasianidae_b ANCESTRAL SPECIES 111 ENSGT00940000154886.a.a.db.b #22 ENSGT00940000156489 #23 Turkey MODERN SPECIES 1299 ENSMGAG00000004969 ENSMGAG00000019697 TNPO1 (ENSMGAG00000022497) ZNF366 (ENSMGAG00000005028) MRPS27 (ENSMGAG00000004213) ENSMGAG00000018227 ENSMGAG00000004723 ENSMGAG00000005094 #22 ENSMGAG00000022563 ENSMGAG00000005034 ENSMGAG00000022224 ENSMGAG00000005135 ENSMGAG00000018973 ENSMGAG00000017142 ENSMGAG00000020678 ENSMGAG00000019468 #22 ENSMGAG00000005156 #23 ENSMGAG00000021756 ENSMGAG00000016103 ENSMGAG00000002255 KCNV2 (ENSMGAG00000001039) VLDLR (ENSMGAG00000003673) ENSMGAG00000016991 ENSMGAG00000019982 SLC1A1 (ENSMGAG00000005250) CDC37L1 (ENSMGAG00000005316) AK3 (ENSMGAG00000005306) ENSMGAG00000021960 ENSMGAG00000002245 JAK2 (ENSMGAG00000005291) ENSMGAG00000016647 Phasianidae ANCESTRAL SPECIES ENSGT00940000154886.a.a.eb #22 Phasianidae_b ANCESTRAL SPECIES ENSGT00940000154886.a.a.eb #22 Turkey MODERN SPECIES 23 ENSMGAG00000020607 ENSMGAG00000021121 ENSMGAG00000010163 ENSMGAG00000022044 ENSMGAG00000000808 ENSMGAG00000000763 ENSMGAG00000000877 ENSMGAG00000000852 ENSMGAG00000019659 ENSMGAG00000000850 ENSMGAG00000000846 MARCHF2 (ENSMGAG00000000837) ENSMGAG00000000832 ENSMGAG00000006435 ENSMGAG00000018454 ENSMGAG00000007623 #22 ENSMGAG00000020045 ENSMGAG00000017295 ENSMGAG00000007590 ENSMGAG00000001030 ENSMGAG00000001015 MATK (ENSMGAG00000000903) ENSMGAG00000021609 ENSMGAG00000017507 ENSMGAG00000000927 ENSMGAG00000000932 APBA3 (ENSMGAG00000000958) TJP3 (ENSMGAG00000000963) PIP5K1C (ENSMGAG00000001308) ENSMGAG00000001353 TBXA2R (ENSMGAG00000015732) Cryptodira ANCESTRAL SPECIES 48 ENSGT00390000014593 ENSGT00950000185009 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00950000185504 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d Chinese turtle MODERN SPECIES 2218 KLF9 (ENSPSIG00000009426) ENSPSIG00000009487 MAMDC2 (ENSPSIG00000009692) CFAP95 (ENSPSIG00000010429) ENSPSIG00000010622 PTAR1 (ENSPSIG00000010871) APBA1 (ENSPSIG00000010992) ENTREP1 (ENSPSIG00000011516) ENSPSIG00000011823 FXN (ENSPSIG00000014478) PIP5K1B (ENSPSIG00000014991) PGM5 (ENSPSIG00000016282) ENSPSIG00000017206 DOCK8 (ENSPSIG00000010032) ENSPSIG00000012215 KANK1 (ENSPSIG00000012412) #22 DMRT1 (ENSPSIG00000013048) #23 ENSPSIG00000000444 DMRT2 (ENSPSIG00000013575) ENSPSIG00000000453 RSPH1 (ENSPSIG00000013753) SLC37A1 (ENSPSIG00000013862) PDE9A (ENSPSIG00000015118) WDR4 (ENSPSIG00000017237) NDUFV3 (ENSPSIG00000017660) PKNOX1 (ENSPSIG00000017680) ENSPSIG00000018134 CBS (ENSPSIG00000018147) U2AF1 (ENSPSIG00000007232) CRYAA (ENSPSIG00000007237) SIK1 (ENSPSIG00000007456) Testudinoidea ANCESTRAL SPECIES 7 ENSGT00390000014593 ENSGT00950000185009 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00950000185504 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d Emydidae ANCESTRAL SPECIES 20 ENSGT00940000156117 ENSGT00390000014593 ENSGT00950000185009 ENSGT00950000185876 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00640000091523 ENSGT00940000155876 ENSGT00950000185504 ENSGT00940000154886.a.a #22 ENSGT00960000189645 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 painted turtle MODERN SPECIES 15 PARVG (ENSCPBG00000025289) ENSCPBG00000025293 SHISAL1 (ENSCPBG00000025296) PTAR1 (ENSCPBG00000025304) ENSCPBG00000025309 APBA1 (ENSCPBG00000025317) ENTREP1 (ENSCPBG00000025326) TJP2 (ENSCPBG00000025332) FXN (ENSCPBG00000025340) PIP5K1B (ENSCPBG00000025343) TMEM252 (ENSCPBG00000025354) PGM5 (ENSCPBG00000025365) ENSCPBG00000025429 DOCK8 (ENSCPBG00000025439) ENSCPBG00000025452 KANK1 (ENSCPBG00000025457) #22 DMRT1 (ENSCPBG00000025458) #23 DMRT3 (ENSCPBG00000025461) #24 DMRT2 (ENSCPBG00000025462) SMARCA2 (ENSCPBG00000025463) VLDLR (ENSCPBG00000025468) KCNV2 (ENSCPBG00000025469) PUM3 (ENSCPBG00000025470) ENSCPBG00000025471 RFX3 (ENSCPBG00000025473) GLIS3 (ENSCPBG00000025474) SLC1A1 (ENSCPBG00000025475) SPATA6L (ENSCPBG00000025478) CDC37L1 (ENSCPBG00000025479) AK3 (ENSCPBG00000025480) RCL1 (ENSCPBG00000025481) Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 50 KLF9 (ENSTMTG00000004548) ENSTMTG00000004566 MAMDC2 (ENSTMTG00000004680) ENSTMTG00000004735 PTAR1 (ENSTMTG00000004743) APBA1 (ENSTMTG00000004858) ENTREP1 (ENSTMTG00000005867) TJP2 (ENSTMTG00000005907) FXN (ENSTMTG00000005998) PIP5K1B (ENSTMTG00000006026) TMEM252 (ENSTMTG00000006221) PGM5 (ENSTMTG00000006248) ENSTMTG00000006284 DOCK8 (ENSTMTG00000006799) ENSTMTG00000015924 KANK1 (ENSTMTG00000015933) #22 ENSTMTG00000015959 DMRT1 (ENSTMTG00000015977) #23 DMRT3 (ENSTMTG00000015991) #24 DMRT2 (ENSTMTG00000016004) SMARCA2 (ENSTMTG00000016037) VLDLR (ENSTMTG00000016110) KCNV2 (ENSTMTG00000016251) PUM3 (ENSTMTG00000016264) ENSTMTG00000016298 RFX3 (ENSTMTG00000016347) GLIS3 (ENSTMTG00000016537) SLC1A1 (ENSTMTG00000016551) SPATA6L (ENSTMTG00000016584) CDC37L1 (ENSTMTG00000016607) AK3 (ENSTMTG00000016623) Three-toed box turtle MODERN SPECIES 323 ENSTMTG00000020844 ENSTMTG00000020835 ENSTMTG00000020824 ENSTMTG00000020807 ENSTMTG00000020800 ENSTMTG00000020795 ENSTMTG00000020643 ENSTMTG00000020619 FBN3 (ENSTMTG00000019349) CTXN1 (ENSTMTG00000019144) TIMM44 (ENSTMTG00000019096) HNRNPM (ENSTMTG00000018939) MARCHF2 (ENSTMTG00000018916) ENSTMTG00000018897 ANGPTL4 (ENSTMTG00000018884) ENSTMTG00000018856 #22 ENSTMTG00000018843 NDUFA7 (ENSTMTG00000018834) ENSTMTG00000018828 ENSTMTG00000018819 ENSTMTG00000018804 ENSTMTG00000018784 Testudinidae DUPLICATION Testudinidae DUPLICATION Testudinidae ANCESTRAL SPECIES 49 ENSGT00940000163715.b ENSGT01030000234515.a.b.b.c.d ENSGT01030000234515.a.b.b.c.c ENSGT00950000183158.B.b ENSGT00940000154412.C ENSGT00390000000051 ENSGT00940000154595 ENSGT00940000158995 ENSGT00940000161659 ENSGT00940000159478 ENSGT00940000154886.a.a.hb.a #22 ENSGT00910000144227.s.a ENSGT00390000006553.i ENSGT00940000164521 ENSGT00940000165063 ENSGT00390000005847 ENSGT00940000160888 ENSGT00940000164644 ENSGT00940000155528 ENSGT00940000162148 ENSGT00940000160775 ENSGT00940000163917.b ENSGT00390000018044.b.b ENSGT00390000001201 ENSGT00940000160384 ENSGT00940000160036 Goode s thornscrub tortoise MODERN SPECIES 14 ENSGEVG00005017948 ENSGEVG00005017925 ENSGEVG00005017895 ENSGEVG00005017885 ENSGEVG00005017860 ENSGEVG00005017835 FBN3 (ENSGEVG00005017147) CTXN1 (ENSGEVG00005017067) ENSGEVG00005017044 TIMM44 (ENSGEVG00005017014) ENSGEVG00005016972 ENSGEVG00005016957 MARCHF2 (ENSGEVG00005016941) RAB11B (ENSGEVG00005016921) ANGPTL4 (ENSGEVG00005016482) ENSGEVG00005016382 #22 ENSGEVG00005016367 ENSGEVG00005016342 ENSGEVG00005016313 ENSGEVG00005016266 ENSGEVG00005016239 POLE4 (ENSGEVG00005016190) ENSGEVG00005015882 ELAVL1 (ENSGEVG00005015828) ZFR2 (ENSGEVG00005015775) ENSGEVG00005015729 ENSGEVG00005015652 ENSGEVG00005015609 ENSGEVG00005015581 MRPL54 (ENSGEVG00005015567) APBA3 (ENSGEVG00005015529) Abingdon island giant tortoise MODERN SPECIES 851 ENSCABG00000001370 #22 ENSCABG00000001331 #22 RPS28 (ENSCABG00000001324) ENSCABG00000001322 ENSCABG00000001316 ENSCABG00000001313 ENSCABG00000001311 ST6GALNAC3 (ENSCABG00000001310) MSH4 (ENSCABG00000001300) RABGGTB (ENSCABG00000001291) ACADM (ENSCABG00000000562) SLC44A5 (ENSCABG00000000461) LHX8 (ENSCABG00000000435) TYW3 (ENSCABG00000000416) CRYZ (ENSCABG00000000293) ENSCABG00000000178 TNNI3K (ENSCABG00000000101) Testudinidae ANCESTRAL SPECIES ENSGT00940000154886.a.a.hb.b #22 Abingdon island giant tortoise MODERN SPECIES 851 ENSCABG00000001370 #22 ENSCABG00000001331 #22 RPS28 (ENSCABG00000001324) ENSCABG00000001322 ENSCABG00000001316 ENSCABG00000001313 ENSCABG00000001311 ST6GALNAC3 (ENSCABG00000001310) MSH4 (ENSCABG00000001300) RABGGTB (ENSCABG00000001291) ACADM (ENSCABG00000000562) SLC44A5 (ENSCABG00000000461) LHX8 (ENSCABG00000000435) TYW3 (ENSCABG00000000416) CRYZ (ENSCABG00000000293) ENSCABG00000000178 Testudinidae ANCESTRAL SPECIES 15 ENSGT00940000156117 ENSGT00390000014593 ENSGT00950000185009 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876 ENSGT00940000154886.a.a.ib #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757.c ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 2200 APBA1 (ENSCABG00000022472) ENTREP1 (ENSCABG00000022469) TJP2 (ENSCABG00000022466) FXN (ENSCABG00000022464) PIP5K1B (ENSCABG00000022463) TMEM252 (ENSCABG00000022462) PGM5 (ENSCABG00000022451) ENSCABG00000022444 ENSCABG00000022441 ENSCABG00000022438 ENSCABG00000022437 ENSCABG00000022434 ENSCABG00000022433 #22 ENSCABG00000022432 #22 DMRT1 (ENSCABG00000022413) #23 DMRT3 (ENSCABG00000022401) #24 DMRT2 (ENSCABG00000022399) ENSCABG00000022392 SMARCA2 (ENSCABG00000019732) VLDLR (ENSCABG00000019415) KCNV2 (ENSCABG00000019411) ENSCABG00000019410 ENSCABG00000019407 RFX3 (ENSCABG00000019365) GLIS3 (ENSCABG00000019359) ENSCABG00000019358 SLC1A1 (ENSCABG00000019357) ENSCABG00000019356 Abingdon island giant tortoise MODERN SPECIES 2200 APBA1 (ENSCABG00000022472) ENTREP1 (ENSCABG00000022469) TJP2 (ENSCABG00000022466) FXN (ENSCABG00000022464) PIP5K1B (ENSCABG00000022463) TMEM252 (ENSCABG00000022462) PGM5 (ENSCABG00000022451) ENSCABG00000022444 ENSCABG00000022441 ENSCABG00000022438 ENSCABG00000022437 ENSCABG00000022434 ENSCABG00000022433 #22 ENSCABG00000022432 #22 DMRT1 (ENSCABG00000022413) #23 DMRT3 (ENSCABG00000022401) #24 DMRT2 (ENSCABG00000022399) ENSCABG00000022392 SMARCA2 (ENSCABG00000019732) VLDLR (ENSCABG00000019415) KCNV2 (ENSCABG00000019411) ENSCABG00000019410 ENSCABG00000019407 RFX3 (ENSCABG00000019365) GLIS3 (ENSCABG00000019359) ENSCABG00000019358 SLC1A1 (ENSCABG00000019357) ENSCABG00000019356 Goode s thornscrub tortoise MODERN SPECIES 20 KLF9 (ENSGEVG00005014244) ENSGEVG00005014271 MAMDC2 (ENSGEVG00005014338) CFAP95 (ENSGEVG00005014451) ENSGEVG00005014485 PTAR1 (ENSGEVG00005014516) APBA1 (ENSGEVG00005014541) ENTREP1 (ENSGEVG00005014644) TJP2 (ENSGEVG00005014736) FXN (ENSGEVG00005014780) PIP5K1B (ENSGEVG00005014815) TMEM252 (ENSGEVG00005014919) PGM5 (ENSGEVG00005014982) ENSGEVG00005015265 DOCK8 (ENSGEVG00005015343) KANK1 (ENSGEVG00005015437) #22 DMRT1 (ENSGEVG00005015585) #23 DMRT3 (ENSGEVG00005015865) #24 DMRT2 (ENSGEVG00005015890) SMARCA2 (ENSGEVG00005015950) KCNV2 (ENSGEVG00005016696) ENSGEVG00005016771 ENSGEVG00005017017 RFX3 (ENSGEVG00005017166) GLIS3 (ENSGEVG00005017217) ENSGEVG00005017260 SLC1A1 (ENSGEVG00005017274) SPATA6L (ENSGEVG00005017368) CDC37L1 (ENSGEVG00005017405) AK3 (ENSGEVG00005017423) RCL1 (ENSGEVG00005017434) Lepidosauria ANCESTRAL SPECIES 1 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 tuatara MODERN SPECIES 1240 MAMDC2 (ENSSPUG00000007516) CFAP95 (ENSSPUG00000007485) ENSSPUG00000007460 ENSSPUG00000007456 ENSSPUG00000007450 ENSSPUG00000007443 APBA1 (ENSSPUG00000007427) ENTREP1 (ENSSPUG00000007411) TJP2 (ENSSPUG00000007374) FXN (ENSSPUG00000007368) PIP5K1B (ENSSPUG00000007360) ENSSPUG00000007227 ENSSPUG00000007170 ENSSPUG00000007138 ENSSPUG00000007091 ENSSPUG00000007055 #22 DMRT1 (ENSSPUG00000006971) #23 DMRT3 (ENSSPUG00000006937) #24 DMRT2 (ENSSPUG00000006911) Episquamata ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Laterata ANCESTRAL SPECIES 8 ENSGT00550000074816.B ENSGT01100000266906 ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000161645.a.e ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a.i ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 Common wall lizard MODERN SPECIES 8 SLC24A2 (ENSPMRG00000020979) ENSPMRG00000020990 MLLT3 (ENSPMRG00000020993) FOCAD (ENSPMRG00000021060) HACD4 (ENSPMRG00000021384) ENSPMRG00000021394 ENSPMRG00000021401 ENSPMRG00000021420 ENSPMRG00000021428 ENSPMRG00000021432 ENSPMRG00000021439 ENSPMRG00000021447 MTAP (ENSPMRG00000021457) CDKN2A (ENSPMRG00000021465) CDKN2B (ENSPMRG00000021467) KANK1 (ENSPMRG00000021475) #22 DMRT1 (ENSPMRG00000021487) #23 DMRT3 (ENSPMRG00000021491) #24 DMRT2 (ENSPMRG00000021499) SMARCA2 (ENSPMRG00000021519) ENSPMRG00000021578 VLDLR (ENSPMRG00000021598) ENSPMRG00000021621 KCNV2 (ENSPMRG00000021625) PUM3 (ENSPMRG00000021630) ENSPMRG00000021639 RFX3 (ENSPMRG00000021654) GLIS3 (ENSPMRG00000021747) ENSPMRG00000021781 TMEM39A (ENSPMRG00000021818) ALG5 (ENSPMRG00000021829) Argentine black and white tegu MODERN SPECIES 25 MAMDC2 (ENSSMRG00000016069) ENSSMRG00000016068 ENSSMRG00000016067 PTAR1 (ENSSMRG00000016066) APBA1 (ENSSMRG00000016065) ENTREP1 (ENSSMRG00000016063) TJP2 (ENSSMRG00000016062) FXN (ENSSMRG00000016061) PIP5K1B (ENSSMRG00000016060) TMEM252 (ENSSMRG00000016059) ENSSMRG00000016058 PGM5 (ENSSMRG00000016057) ENSSMRG00000016056 ENSSMRG00000016054 DOCK8 (ENSSMRG00000012483) KANK1 (ENSSMRG00000012463) #22 DMRT1 (ENSSMRG00000012418) #23 DMRT3 (ENSSMRG00000012413) #24 DMRT2 (ENSSMRG00000012412) ENSSMRG00000012401 SMARCA2 (ENSSMRG00000012396) VLDLR (ENSSMRG00000012387) KCNV2 (ENSSMRG00000012381) PUM3 (ENSSMRG00000012380) ENSSMRG00000012379 RFX3 (ENSSMRG00000012376) GLIS3 (ENSSMRG00000012362) ENSSMRG00000012349 KIAA2026 (ENSSMRG00000012326) MLANA (ENSSMRG00000012325) ERMP1 (ENSSMRG00000012324) Toxicofera ANCESTRAL SPECIES 6 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Lizard MODERN SPECIES 1 SMC5 (ENSACAG00000000931) MAMDC2 (ENSACAG00000000946) CFAP95 (ENSACAG00000001025) PTAR1 (ENSACAG00000027513) APBA1 (ENSACAG00000001040) ENTREP1 (ENSACAG00000001191) ENSACAG00000001252 FXN (ENSACAG00000043698) PIP5K1B (ENSACAG00000001281) TMEM252 (ENSACAG00000029180) PGM5 (ENSACAG00000001410) ENSACAG00000008130 ENSACAG00000001658 DOCK8 (ENSACAG00000001924) ENSACAG00000036574 KANK1 (ENSACAG00000002270) #22 DMRT1 (ENSACAG00000002356) #23 DMRT3 (ENSACAG00000002401) #24 DMRT2 (ENSACAG00000002411) SMARCA2 (ENSACAG00000002423) VLDLR (ENSACAG00000003015) KCNV2 (ENSACAG00000003138) PUM3 (ENSACAG00000003174) ENSACAG00000003227 ENSACAG00000035469 RFX3 (ENSACAG00000003262) GLIS3 (ENSACAG00000003374) ENSACAG00000036408 SLC1A1 (ENSACAG00000003433) ENSACAG00000043625 SPATA6L (ENSACAG00000029209) Elapidae ANCESTRAL SPECIES 7 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00950000186013 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 Elapidae_a ANCESTRAL SPECIES 130 ENSGT00940000161989 ENSGT01030000234515.a.b.b.c.b ENSGT00950000183158.B.b ENSGT00940000154412.C ENSGT00390000000051 ENSGT00940000154595 ENSGT00960000193104 ENSGT00940000163126 ENSGT00940000159478 ENSGT00940000161178 ENSGT00910000144227.t ENSGT00950000185125 ENSGT00940000155876.m ENSGT00940000154886.a.a #22 ENSGT00910000144227.s.a ENSGT00390000006553 ENSGT00940000164521 ENSGT00940000165063 Blue-lipped sea krait MODERN SPECIES 5753 KANK1 (ENSLLTG00000008965) #22 Acanthophiinae ANCESTRAL SPECIES 9 ENSGT00550000074816.B ENSGT00940000156117 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000164995 ENSGT00940000157140.b.b ENSGT00640000091523 ENSGT00950000185125 ENSGT00940000155876.m ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 23 KLF9 (ENSPTXG00000019213) SMC5 (ENSPTXG00000019212) MAMDC2 (ENSPTXG00000019204) CFAP95 (ENSPTXG00000019203) PTAR1 (ENSPTXG00000019202) APBA1 (ENSPTXG00000019201) ENTREP1 (ENSPTXG00000019200) ENSPTXG00000018866 FXN (ENSPTXG00000018865) PIP5K1B (ENSPTXG00000018864) TMEM252 (ENSPTXG00000018863) PGM5 (ENSPTXG00000018862) ENSPTXG00000018861 ENSPTXG00000018860 DOCK8 (ENSPTXG00000018810) KANK1 (ENSPTXG00000018808) #22 DMRT1 (ENSPTXG00000018807) #23 DMRT3 (ENSPTXG00000018806) #24 DMRT2 (ENSPTXG00000018805) SMARCA2 (ENSPTXG00000018801) VLDLR (ENSPTXG00000018796) KCNV2 (ENSPTXG00000018795) PUM3 (ENSPTXG00000018794) ENSPTXG00000018793 RFX3 (ENSPTXG00000018767) GLIS3 (ENSPTXG00000018766) SLC1A1 (ENSPTXG00000018764) CDC37L1 (ENSPTXG00000018763) AK3 (ENSPTXG00000018762) RCL1 (ENSPTXG00000018760) JAK2 (ENSPTXG00000018752) Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 1362 ENSPTXG00000013006 #22 Eastern brown snake MODERN SPECIES 1360 ENSPTXG00000013002 #22 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 1258 ENSPTXG00000012923 #22 Eastern brown snake MODERN SPECIES 1257 ENSPTXG00000012922 #22 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 1 SMC5 (ENSNSUG00000017848) ENSNSUG00000017849 MAMDC2 (ENSNSUG00000017850) CFAP95 (ENSNSUG00000017851) PTAR1 (ENSNSUG00000017852) APBA1 (ENSNSUG00000017853) ENTREP1 (ENSNSUG00000017854) ENSNSUG00000017855 FXN (ENSNSUG00000018034) PIP5K1B (ENSNSUG00000018035) TMEM252 (ENSNSUG00000018038) PGM5 (ENSNSUG00000018044) ENSNSUG00000018047 ENSNSUG00000018048 DOCK8 (ENSNSUG00000018049) KANK1 (ENSNSUG00000018050) #22 DMRT1 (ENSNSUG00000018051) #23 DMRT3 (ENSNSUG00000018056) #24 DMRT2 (ENSNSUG00000018057) SMARCA2 (ENSNSUG00000018108) VLDLR (ENSNSUG00000019901) KCNV2 (ENSNSUG00000019916) PUM3 (ENSNSUG00000019917) ENSNSUG00000019918 RFX3 (ENSNSUG00000019919) GLIS3 (ENSNSUG00000019925) SLC1A1 (ENSNSUG00000019926) SPATA6L (ENSNSUG00000019928) CDC37L1 (ENSNSUG00000019929) AK3 (ENSNSUG00000019930) ENSNSUG00000019931 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 921 ENSNSUG00000006797 #22 ENSNSUG00000006796 #22 ENSNSUG00000006795 Mainland tiger snake MODERN SPECIES 918 ENSNSUG00000006779 #22 ENSNSUG00000006777 #22 RPS28 (ENSNSUG00000006775) Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 918 ENSNSUG00000006779 #22 ENSNSUG00000006777 #22 RPS28 (ENSNSUG00000006775) Mainland tiger snake MODERN SPECIES 921 ENSNSUG00000006797 #22 ENSNSUG00000006796 #22 ENSNSUG00000006795 Indian cobra DUPLICATION Indian cobra MODERN SPECIES 1 ENSNNAG00000017932 ENSNNAG00000017931 PTAR1 (ENSNNAG00000017929) APBA1 (ENSNNAG00000017927) ENTREP1 (ENSNNAG00000017925) TJP2 (ENSNNAG00000017694) FXN (ENSNNAG00000017581) PIP5K1B (ENSNNAG00000017571) TMEM252 (ENSNNAG00000017566) PGM5 (ENSNNAG00000017535) ENSNNAG00000017526 ENSNNAG00000017514 ENSNNAG00000017496 ENSNNAG00000017479 ENSNNAG00000017470 KANK1 (ENSNNAG00000017462) #22 DMRT1 (ENSNNAG00000017439) #23 DMRT3 (ENSNNAG00000017425) #24 DMRT2 (ENSNNAG00000017421) SMARCA2 (ENSNNAG00000016662) VLDLR (ENSNNAG00000016101) KCNV2 (ENSNNAG00000016029) ENSNNAG00000015978 ENSNNAG00000015953 ENSNNAG00000015896 RFX3 (ENSNNAG00000015581) GLIS3 (ENSNNAG00000015518) ENSNNAG00000015513 SLC1A1 (ENSNNAG00000015451) CDC37L1 (ENSNNAG00000015380) AK3 (ENSNNAG00000015359) Indian cobra MODERN SPECIES ELAVL1 (ENSNNAG00000003038) ENSNNAG00000003046 ENSNNAG00000003056 ENSNNAG00000003068 ENSNNAG00000003091 ENSNNAG00000003113 ENSNNAG00000003150 ENSNNAG00000003174 ENSNNAG00000003191 ENSNNAG00000003217 ENSNNAG00000003256 ENSNNAG00000003395 ENSNNAG00000003414 ENSNNAG00000003449 ENSNNAG00000003471 ENSNNAG00000000282 #22 ENSNNAG00000000289 ENSNNAG00000000322 #22 ENSNNAG00000000339 RPS28 (ENSNNAG00000000349) NDUFA7 (ENSNNAG00000000360) ENSNNAG00000000368 POLE4 (ENSNNAG00000000387) ENSNNAG00000000426 ENSNNAG00000000512 ABHD8 (ENSNNAG00000000533) ANKLE1 (ENSNNAG00000000555) BABAM1 (ENSNNAG00000000594) NR2F6 (ENSNNAG00000000613) ENSNNAG00000000628 ENSNNAG00000000640 Indian cobra MODERN SPECIES ENSNNAG00000003056 ENSNNAG00000003068 ENSNNAG00000003091 ENSNNAG00000003113 ENSNNAG00000003150 ENSNNAG00000003174 ENSNNAG00000003191 ENSNNAG00000003217 ENSNNAG00000003256 ENSNNAG00000003395 ENSNNAG00000003414 ENSNNAG00000003449 ENSNNAG00000003471 ENSNNAG00000000282 #22 ENSNNAG00000000289 ENSNNAG00000000322 #22 ENSNNAG00000000339 RPS28 (ENSNNAG00000000349) NDUFA7 (ENSNNAG00000000360) ENSNNAG00000000368 POLE4 (ENSNNAG00000000387) ENSNNAG00000000426 ENSNNAG00000000512 ABHD8 (ENSNNAG00000000533) ANKLE1 (ENSNNAG00000000555) BABAM1 (ENSNNAG00000000594) NR2F6 (ENSNNAG00000000613) ENSNNAG00000000628 ENSNNAG00000000640 KCNN1 (ENSNNAG00000000659) CCDC124 (ENSNNAG00000000673) Anura ANCESTRAL SPECIES 29 ENSGT00390000014593 ENSGT00390000017892 ENSGT00940000156820.a.a ENSGT00530000063335.B.a.b.d ENSGT00940000155164 ENSGT00940000158634 ENSGT00390000005811 ENSGT00940000156639 ENSGT00390000005250 ENSGT00940000158126 ENSGT00940000157140.a ENSGT00940000163497 ENSGT00940000164556 ENSGT00640000091523 ENSGT00940000155876 ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000155460 ENSGT00940000157438 ENSGT00390000015757 ENSGT00940000164013 ENSGT01050000244879.a.a.b ENSGT00940000156896 ENSGT00940000155397.b ENSGT00530000063821.b.b ENSGT00390000013443.d ENSGT00940000155120 ENSGT00530000063404.a Leishan spiny toad MODERN SPECIES ENTREP1 (ENSLLEG00000020161) ENSLLEG00000020378 ENSLLEG00000020437 ENSLLEG00000020793 FXN (ENSLLEG00000021154) PIP5K1B (ENSLLEG00000021296) ENSLLEG00000021785 ENSLLEG00000021820 TMEM252 (ENSLLEG00000022093) ENSLLEG00000022171 ENSLLEG00000022237 ENSLLEG00000022271 ENSLLEG00000022376 ENSLLEG00000022440 DOCK8 (ENSLLEG00000000077) KANK1 (ENSLLEG00000000147) #22 ENSLLEG00000000168 DMRT1 (ENSLLEG00000000180) #23 DMRT3 (ENSLLEG00000000195) #24 ENSLLEG00000000201 DMRT2 (ENSLLEG00000000206) ENSLLEG00000000229 ENSLLEG00000000269 ENSLLEG00000000280 SMARCA2 (ENSLLEG00000000350) ENSLLEG00000000580 VLDLR (ENSLLEG00000000597) KCNV2 (ENSLLEG00000000652) PUM3 (ENSLLEG00000000665) RFX3 (ENSLLEG00000000718) ENSLLEG00000000868 Frog DUPLICATION Frog MODERN SPECIES cfap95 (ENSXETG00000037188) ptar1 (ENSXETG00000031102) apba1 (ENSXETG00000033427) fam189a2 (ENSXETG00000033309) tjp2 (ENSXETG00000001683) pip5k1b (ENSXETG00000001678) ENSXETG00000001676 tmem252 (ENSXETG00000035157) pgm5 (ENSXETG00000001670) foxd4l1.2 (ENSXETG00000001668) foxd4l1.1 (ENSXETG00000001667) XB5815362 [provisional:cyp2j6] (ENSXETG00000001660) cbwd1.1 (ENSXETG00000001666) cbwd2 (ENSXETG00000001656) dock8 (ENSXETG00000001648) kank1 (ENSXETG00000002278) #22 dmrt1 (ENSXETG00000002277) #23 dmrt3 (ENSXETG00000015285) #24 dmrt2 (ENSXETG00000033983) smarca2 (ENSXETG00000015299) vldlr (ENSXETG00000011709) kcnv2 (ENSXETG00000011708) pum3 (ENSXETG00000011707) carm1p1 (ENSXETG00000036672) crygbl.2 (ENSXETG00000048659) rfx3 (ENSXETG00000011698) glis3 (ENSXETG00000011692) slc1a1 (ENSXETG00000011685) spata6l (ENSXETG00000030483) cdc37l1 (ENSXETG00000000595) ak3 (ENSXETG00000000588) Frog MODERN SPECIES ENSXETG00000048263 slc1a6 (ENSXETG00000021879) ranbp3 (ENSXETG00000025475) caps (ENSXETG00000021881) vmac (ENSXETG00000021884) ndufa11 (ENSXETG00000021885) med11 (ENSXETG00000045957) nrtn (ENSXETG00000036233) larp6-like.1 (ENSXETG00000021887) lonp1 (ENSXETG00000021888) rab11b.2 (ENSXETG00000021890) marchf2 (ENSXETG00000021892) rab11b.1 (ENSXETG00000025484) angptl4 (ENSXETG00000021893) ENSXETG00000046810 kank3 (ENSXETG00000021895) #22 rps28p9 (ENSXETG00000021905) ndufa7 (ENSXETG00000037991) ENSXETG00000045564 ENSXETG00000043243 ENSXETG00000033501 ENSXETG00000021930 ENSXETG00000037311 ENSXETG00000021946 ENSXETG00000043372 ENSXETG00000048871 ENSXETG00000036450 ENSXETG00000048356 ENSXETG00000041691 ENSXETG00000043431 timm10 (ENSXETG00000027231) Coelacanth DUPLICATION Coelacanth MODERN SPECIES 897 KANK1 (ENSLACG00000013685) #22 ENSLACG00000022162 DMRT1 (ENSLACG00000013139) #23 DMRT3 (ENSLACG00000012023) #24 DMRT2 (ENSLACG00000011510) SMARCA2 (ENSLACG00000000270) Coelacanth MODERN SPECIES 274 LMNB2 (ENSLACG00000015242) TMPRSS9 (ENSLACG00000015402) SPPL2B (ENSLACG00000015569) LSM7 (ENSLACG00000015700) ENSLACG00000015723 ENSLACG00000015739 FBN3 (ENSLACG00000016154) ENSLACG00000016511 TIMM44 (ENSLACG00000016754) HNRNPM (ENSLACG00000016814) rab11bb (ENSLACG00000016857) MARCHF2 (ENSLACG00000022426) RAB11B (ENSLACG00000016974) ANGPTL4 (ENSLACG00000017018) ENSLACG00000017186 kank3 (ENSLACG00000017209) #22 NDUFA7 (ENSLACG00000017258) ENSLACG00000017294 ENSLACG00000017317 ENSLACG00000017420 admp (ENSLACG00000017430) pnhd (ENSLACG00000017449) POLE4 (ENSLACG00000017480) ENSLACG00000017484 tspan37 (ENSLACG00000017588) ELAVL1 (ENSLACG00000017607) slc1a8b (ENSLACG00000017647) ENSLACG00000017673 ENSLACG00000017745 ENSLACG00000017800 CTNS (ENSLACG00000017816) Actinopterygii ANCESTRAL SPECIES 46 ENSGT00950000183171.A.b.a.b ENSGT01040000240503.A.a.b ENSGT00940000161493 ENSGT00390000007991 ENSGT00530000063749.c.a ENSGT00940000165115 ENSGT00390000003420.b ENSGT01030000234559.a.a.a ENSGT00940000153617.A.b ENSGT00940000159248 ENSGT00390000008296.a ENSGT00940000163706 ENSGT00940000161210 ENSGT00940000158174 ENSGT00940000159478 ENSGT00940000154886.a.a #22 ENSGT00910000144227 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000162544 ENSGT00390000006975 ENSGT00940000164512 ENSGT00940000154819.b ENSGT00940000164521 ENSGT00940000159134 ENSGT00940000174859 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b ENSGT00940000166235 Neopterygii ANCESTRAL SPECIES 26 ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.b ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b ENSGT00390000000113.B ENSGT00940000156290 ENSGT00940000157321 ENSGT01050000244898.b.b ENSGT00940000158529 ENSGT00940000156035 ENSGT00530000064292 ENSGT00940000157298 ENSGT00940000162168 Osteoglossocephalai ANCESTRAL SPECIES 8 ENSGT00950000182964.a.b.b.a.a ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762 ENSGT00940000155567 ENSGT00940000159777 ENSGT00390000001195.a.b ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.b ENSGT00940000154886.a.a #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT00940000157321 ENSGT01050000244898.b.b ENSGT00940000158529 ENSGT00940000156035 ENSGT01080000257489 ENSGT00530000064292 ENSGT00940000157298 Clupeocephala ANCESTRAL SPECIES 38 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00940000161989 ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00390000000475 ENSGT00940000158174.b ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b ENSGT00940000165052 ENSGT00940000160748.a ENSGT00530000063974.a ENSGT00390000016934 ENSGT00390000006166.b ENSGT00390000016851 ENSGT00940000157019.g.a Euteleosteomorpha ANCESTRAL SPECIES 109 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00940000161989 ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b Acanthomorphata ANCESTRAL SPECIES 56 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b ENSGT00390000008296.a ENSGT00940000159248 ENSGT00940000153617.A.a.a ENSGT01030000234559.a.a.a ENSGT00390000003420.b ENSGT00940000165115.a ENSGT01050000244814.a.a.b.b.b.a.b Euacanthomorphacea ANCESTRAL SPECIES 9 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00510000053055 Percomorphaceae ANCESTRAL SPECIES 12 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f Percomorphaceae_B ANCESTRAL SPECIES 9 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 Ovalentaria ANCESTRAL SPECIES 9 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 Atherinomorphae ANCESTRAL SPECIES 7 ENSGT01050000244902.a.a.a.b ENSGT00940000159007 ENSGT00390000000259.k.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 Cyprinodontiformes ANCESTRAL SPECIES 7 ENSGT01050000244902.a.a.a.b ENSGT00940000159007 ENSGT00390000000259.k.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 Aplocheiloidei ANCESTRAL SPECIES 3 ENSGT01050000244902.a.a.a.b ENSGT00940000159007 ENSGT00390000000259.k.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 ENSGT00940000159994 ENSGT00940000165866 Mangrove rivulus MODERN SPECIES 25 ENSKMAG00000006073 slc35e1 (ENSKMAG00000006050) pex11g (ENSKMAG00000006027) APBA3 (ENSKMAG00000006013) ENSKMAG00000005899 r3hdm4 (ENSKMAG00000005853) ARID3A (ENSKMAG00000005797) ENSKMAG00000005762 ENSKMAG00000005752 ndufs7 (ENSKMAG00000005738) gamt (ENSKMAG00000005718) dazap1 (ENSKMAG00000005673) dpp9 (ENSKMAG00000005567) ENSKMAG00000005527 ENSKMAG00000005506 kank3 (ENSKMAG00000005446) #22 PIK3R2 (ENSKMAG00000005406) ENSKMAG00000005384 ENSKMAG00000005250 mpv17l2 (ENSKMAG00000005132) RAB3A (ENSKMAG00000005094) JUND (ENSKMAG00000005081) lsm4 (ENSKMAG00000005073) PGPEP1 (ENSKMAG00000005046) upf1 (ENSKMAG00000004962) ddx49 (ENSKMAG00000004909) homer3b (ENSKMAG00000004866) uba52 (ENSKMAG00000004847) ENSKMAG00000004838 arrdc2 (ENSKMAG00000004825) ENSKMAG00000004804 Turquoise killifish MODERN SPECIES 1626 NDUFA7 (ENSNFUG00015015618) B3GNT3 (ENSNFUG00015015607) ENSNFUG00015015602 ENSNFUG00015014189 slc5a5 (ENSNFUG00015023500) APBA3 (ENSNFUG00015023470) ENSNFUG00015023460 ENSNFUG00015023457 BX323045.3 (ENSNFUG00015023454) ndufs7 (ENSNFUG00015023446) GAMT (ENSNFUG00015023443) dazap1 (ENSNFUG00015023417) ENSNFUG00015023410 dpp9 (ENSNFUG00015022961) ANGPTL4 (ENSNFUG00015022906) KANK3 (ENSNFUG00015022899) #22 ENSNFUG00015022894 ENSNFUG00015022893 ENSNFUG00015022890 ENSNFUG00015021812 MPV17L2 (ENSNFUG00015021776) RAB3AB (ENSNFUG00015021771) JUND (ENSNFUG00015021768) ddx49 (ENSNFUG00015021681) lsm4 (ENSNFUG00015021666) PGPEP1 (ENSNFUG00015021663) upf1 (ENSNFUG00015021476) homer3b (ENSNFUG00015021458) UBA52 (ENSNFUG00015021445) ARRDC2 (ENSNFUG00015021433) ENSNFUG00015021417 Cyprinodontoidei ANCESTRAL SPECIES 61 ENSGT00390000015467 ENSGT00940000161439 ENSGT00940000160384 ENSGT00390000000427 ENSGT00390000000259.k.b ENSGT00940000159007 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000181476 ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 Poeciliinae ANCESTRAL SPECIES 7 ENSGT00940000159457 ENSGT00940000156725.f ENSGT00940000158821 ENSGT00390000016548 ENSGT00940000155446 ENSGT01060000249981.A ENSGT00940000155152.f.b ENSGT00940000159228.a.a ENSGT00940000159902 ENSGT01030000234614.B.b ENSGT00390000005554 ENSGT00940000163422 ENSGT00940000154611.ad.b ENSGT00940000163581.f.a.c ENSGT00940000163581.f.a.d.a.b ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 Poecilia ANCESTRAL SPECIES 1 ENSGT00390000007336.a.a ENSGT00940000167793 ENSGT00940000156725.f ENSGT00940000158821 ENSGT00390000016548 ENSGT00940000155446 ENSGT01060000249981.A ENSGT00940000155152.f.b ENSGT00940000159228.a.a ENSGT00940000159902 ENSGT01030000234614.B.b ENSGT00390000005554 ENSGT00940000154611.ad.b ENSGT00940000163581.f.a.c ENSGT00940000163581.f.a.d.a.b ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 NAME_6 ANCESTRAL SPECIES 133 ENSGT00940000163581.f.a.c.c ENSGT00940000163581.f.a.d.a.a ENSGT00940000163581.f.a.d.a.b ENSGT00940000154457.b ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000153593.e.a ENSGT00940000159994 Sailfin molly MODERN SPECIES 1861 ENSPLAG00000001310 ENSPLAG00000001307 ENSPLAG00000001304 ENSPLAG00000001301 ENSPLAG00000001298 kank3 (ENSPLAG00000001297) #22 ENSPLAG00000001293 Amazon molly MODERN SPECIES 366 ENSPFOG00000000100 ENSPFOG00000000111 ENSPFOG00000022999 ENSPFOG00000000122 ENSPFOG00000000127 kank3 (ENSPFOG00000000142) #22 ENSPFOG00000023056 ENSPFOG00000024225 ENSPFOG00000000158 ENSPFOG00000000170 ENSPFOG00000024762 ENSPFOG00000000235 mpv17l2 (ENSPFOG00000000341) RAB3A (ENSPFOG00000000350) JUND (ENSPFOG00000020956) RNF213 (ENSPFOG00000000373) lsm4 (ENSPFOG00000000570) PGPEP1 (ENSPFOG00000000589) upf1 (ENSPFOG00000000673) ddx49 (ENSPFOG00000000870) homer3b (ENSPFOG00000001016) Guppy MODERN SPECIES 456 lhx9 (ENSPREG00000012325) DENND1B (ENSPREG00000012284) crb1 (ENSPREG00000012238) fam163ab (ENSPREG00000012226) ENSPREG00000012178 nphs2 (ENSPREG00000012128) axdnd1 (ENSPREG00000012102) RABGAP1L (ENSPREG00000011996) ENSPREG00000011892 ENSPREG00000011848 ENSPREG00000011822 ENSPREG00000011808 ENSPREG00000011802 ENSPREG00000011784 ENSPREG00000011776 kank3 (ENSPREG00000011759) #22 PIK3R2 (ENSPREG00000011739) ENSPREG00000011729 ENSPREG00000011477 ENSPREG00000011422 mpv17l2 (ENSPREG00000011417) RAB3A (ENSPREG00000011395) JUND (ENSPREG00000011387) ENSPREG00000011317 lsm4 (ENSPREG00000011290) PGPEP1 (ENSPREG00000011279) upf1 (ENSPREG00000011247) ddx49 (ENSPREG00000011214) homer3b (ENSPREG00000011192) uba52 (ENSPREG00000011185) ENSPREG00000011175 Platyfish MODERN SPECIES 23 lhx9 (ENSXMAG00000022237) si:dkey-121a9.3 (ENSXMAG00000026577) DENND1B (ENSXMAG00000002440) crb1 (ENSXMAG00000002447) fam163ab (ENSXMAG00000002457) ENSXMAG00000026146 nphs2 (ENSXMAG00000026766) axdnd1 (ENSXMAG00000017981) RABGAP1L (ENSXMAG00000002461) GPR52 (ENSXMAG00000020082) ENSXMAG00000002467 ENSXMAG00000028256 ENSXMAG00000024306 ENSXMAG00000012367 ENSXMAG00000023978 kank3 (ENSXMAG00000027105) #22 PIK3R2 (ENSXMAG00000002484) ENSXMAG00000002502 ENSXMAG00000002505 mpv17l2 (ENSXMAG00000002525) RAB3A (ENSXMAG00000023647) JUND (ENSXMAG00000020084) lsm4 (ENSXMAG00000026672) PGPEP1 (ENSXMAG00000002532) upf1 (ENSXMAG00000002540) ENSXMAG00000027740 ddx49 (ENSXMAG00000002554) homer3b (ENSXMAG00000002567) uba52 (ENSXMAG00000003913) arrdc2 (ENSXMAG00000025940) ENSXMAG00000003928 NAME_4 ANCESTRAL SPECIES 121 ENSGT00390000015467 ENSGT00940000161439 ENSGT00940000160384 ENSGT00390000000427 ENSGT00390000000259.k.b ENSGT00940000159007 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000181476 ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000153593.e.a Mummichog MODERN SPECIES 2441 r3hdm4 (ENSFHEG00000017636) ABCA7 (ENSFHEG00000017604) APBA3 (ENSFHEG00000016995) pex11g (ENSFHEG00000016986) MED26 (ENSFHEG00000016979) slc35e1 (ENSFHEG00000016974) ENSFHEG00000016940 ENSFHEG00000016902 ENSFHEG00000016837 ndufs7 (ENSFHEG00000016835) gamt (ENSFHEG00000016816) dazap1 (ENSFHEG00000016786) dpp9 (ENSFHEG00000016696) ENSFHEG00000016686 kank3 (ENSFHEG00000016671) #22 ENSFHEG00000016658 ENSFHEG00000016649 ENSFHEG00000016411 mpv17l2 (ENSFHEG00000016402) RAB3A (ENSFHEG00000016398) JUND (ENSFHEG00000016390) ENSFHEG00000016375 PGPEP1 (ENSFHEG00000016365) LSM4 (ENSFHEG00000016353) ENSFHEG00000016334 upf1 (ENSFHEG00000016276) ENSFHEG00000016199 homer3b (ENSFHEG00000016182) uba52 (ENSFHEG00000016164) ENSFHEG00000016150 Sheepshead minnow MODERN SPECIES 323 kank3 (ENSCVAG00000010731) #22 ENSCVAG00000000726 ENSCVAG00000010693 ENSCVAG00000010684 ENSCVAG00000010650 mpv17l2 (ENSCVAG00000010639) RAB3A (ENSCVAG00000000295) JUND (ENSCVAG00000010614) lsm4 (ENSCVAG00000010601) PGPEP1 (ENSCVAG00000010583) upf1 (ENSCVAG00000010561) ddx49 (ENSCVAG00000010466) homer3b (ENSCVAG00000010423) uba52 (ENSCVAG00000010415) arrdc2 (ENSCVAG00000010398) ENSCVAG00000000288 Oryzias ANCESTRAL SPECIES 5 ENSGT00940000165170 ENSGT00940000159134.r.b ENSGT01030000234559.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757.h ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 ENSGT00940000159994 ENSGT00940000165866 Oryzias_b ANCESTRAL SPECIES 15 ENSGT00940000165170 ENSGT00940000159134.r.b ENSGT01030000234559.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757.h ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000159994 ENSGT00940000165866 ENSGT00940000163581.f.a.f.b.a.b Indian medaka MODERN SPECIES 13 ndufa7 (ENSOMEG00000002905) ENSOMEG00000002910 B3GNT3 (ENSOMEG00000002917) PTGER3 (ENSOMEG00000002924) pex11g (ENSOMEG00000002933) APBA3 (ENSOMEG00000002956) ABCA7 (ENSOMEG00000002991) r3hdm4 (ENSOMEG00000003005) ARID3A (ENSOMEG00000003015) ENSOMEG00000003027 ENSOMEG00000003037 ndufs7 (ENSOMEG00000003045) gamt (ENSOMEG00000003067) dazap1 (ENSOMEG00000003120) dpp9 (ENSOMEG00000003168) kank3 (ENSOMEG00000003200) #22 ENSOMEG00000003403 ENSOMEG00000003444 ENSOMEG00000003545 mpv17l2 (ENSOMEG00000003572) RAB3A (ENSOMEG00000003588) JUND (ENSOMEG00000003597) lsm4 (ENSOMEG00000003606) PGPEP1 (ENSOMEG00000003628) upf1 (ENSOMEG00000003665) ddx49 (ENSOMEG00000003733) homer3b (ENSOMEG00000003754) uba52 (ENSOMEG00000003772) arrdc2 (ENSOMEG00000003802) ENSOMEG00000003822 ENSOMEG00000003836 Javanese ricefish MODERN SPECIES 18 ndufa7 (ENSOJAG00000008883) ENSOJAG00000008907 B3GNT3 (ENSOJAG00000008940) PTGER3 (ENSOJAG00000008950) pex11g (ENSOJAG00000008956) APBA3 (ENSOJAG00000008978) ENSOJAG00000009437 r3hdm4 (ENSOJAG00000009799) ARID3A (ENSOJAG00000009804) ENSOJAG00000009814 ENSOJAG00000009829 ndufs7 (ENSOJAG00000009842) gamt (ENSOJAG00000009869) dpp9 (ENSOJAG00000009917) ENSOJAG00000010243 kank3 (ENSOJAG00000010266) #22 ENSOJAG00000010284 ENSOJAG00000010563 ENSOJAG00000010597 mpv17l2 (ENSOJAG00000010670) RAB3A (ENSOJAG00000010700) JUND (ENSOJAG00000010719) lsm4 (ENSOJAG00000010743) PGPEP1 (ENSOJAG00000010774) upf1 (ENSOJAG00000010854) ddx49 (ENSOJAG00000011686) homer3b (ENSOJAG00000011765) uba52 (ENSOJAG00000011808) arrdc2 (ENSOJAG00000011854) ENSOJAG00000011901 ENSOJAG00000011919 Oryzias_a ANCESTRAL SPECIES 14 ENSGT00940000165170 ENSGT00940000159134.r.b ENSGT01030000234559.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757.h ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000177177 ENSGT00940000159994 ENSGT00940000165866 Japanese Medaka HdrR MODERN SPECIES 18 ENSORLG00000007938 B3GNT3 (ENSORLG00000007940) PTGER3 (ENSORLG00000022393) pex11g (ENSORLG00000007961) APBA3 (ENSORLG00000007976) ENSORLG00000008156 r3hdm4 (ENSORLG00000008183) ENSORLG00000008198 ENSORLG00000008205 ENSORLG00000008212 ndufs7 (ENSORLG00000008222) gamt (ENSORLG00000008238) dazap1 (ENSORLG00000008278) dpp9 (ENSORLG00000008308) ENSORLG00000023396 kank3 (ENSORLG00000008326) #22 ENSORLG00000024065 ENSORLG00000008333 ENSORLG00000008341 mpv17l2 (ENSORLG00000008346) RAB3A (ENSORLG00000008371) JUND (ENSORLG00000008379) lsm4 (ENSORLG00000008391) PGPEP1 (ENSORLG00000008398) upf1 (ENSORLG00000008453) ddx49 (ENSORLG00000008509) homer3b (ENSORLG00000008531) uba52 (ENSORLG00000008546) ENSORLG00000028736 arrdc2 (ENSORLG00000008572) ENSORLG00000027804 Chinese medaka MODERN SPECIES 616 B3GNT3 (ENSOSIG00000021495) PTGER3 (ENSOSIG00000021489) ENSOSIG00000021484 pex11g (ENSOSIG00000021482) APBA3 (ENSOSIG00000021452) ENSOSIG00000021382 r3hdm4 (ENSOSIG00000021341) ENSOSIG00000021338 ENSOSIG00000021335 ENSOSIG00000021332 ndufs7 (ENSOSIG00000021327) gamt (ENSOSIG00000021322) dazap1 (ENSOSIG00000021318) ENSOSIG00000021313 dpp9 (ENSOSIG00000020541) kank3 (ENSOSIG00000020519) #22 ENSOSIG00000020514 ENSOSIG00000020512 ENSOSIG00000020429 RAB3A (ENSOSIG00000020384) mpv17l2 (ENSOSIG00000020381) ENSOSIG00000020378 lsm4 (ENSOSIG00000020376) PGPEP1 (ENSOSIG00000020375) upf1 (ENSOSIG00000020224) ddx49 (ENSOSIG00000020191) homer3b (ENSOSIG00000020181) uba52 (ENSOSIG00000020176) ENSOSIG00000020172 arrdc2 (ENSOSIG00000020171) Ovalentaria_B ANCESTRAL SPECIES 8 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 Pomacentridae ANCESTRAL SPECIES 16 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 Pomacentridae_A ANCESTRAL SPECIES ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Amphiprion ANCESTRAL SPECIES 2 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a ENSGT00510000053055 Orange clownfish MODERN SPECIES 11 ENSAPEG00000004882 ENSAPEG00000004951 ENSAPEG00000004970 pex11g (ENSAPEG00000004987) APBA3 (ENSAPEG00000004999) ABCA7 (ENSAPEG00000005033) r3hdm4 (ENSAPEG00000005089) ARID3A (ENSAPEG00000005100) ENSAPEG00000005166 ndufs7 (ENSAPEG00000005186) gamt (ENSAPEG00000005240) dazap1 (ENSAPEG00000005289) dpp9 (ENSAPEG00000005322) ANGPTL4 (ENSAPEG00000005393) ENSAPEG00000005408 kank3 (ENSAPEG00000005457) #22 ENSAPEG00000005475 ENSAPEG00000005514 ENSAPEG00000005628 ENSAPEG00000006111 ENSAPEG00000006175 mpv17l2 (ENSAPEG00000006183) RAB3A (ENSAPEG00000006195) JUND (ENSAPEG00000006214) lsm4 (ENSAPEG00000006238) PGPEP1 (ENSAPEG00000006250) upf1 (ENSAPEG00000006292) ddx49 (ENSAPEG00000006367) homer3b (ENSAPEG00000006418) uba52 (ENSAPEG00000006450) arrdc2 (ENSAPEG00000006466) Clown anemonefish MODERN SPECIES 253 ENSAOCG00000006685 kank3 (ENSAOCG00000006660) #22 ENSAOCG00000006648 ENSAOCG00000006609 ENSAOCG00000006593 ENSAOCG00000006530 ENSAOCG00000006488 mpv17l2 (ENSAOCG00000006479) RAB3A (ENSAOCG00000006464) JUND (ENSAOCG00000006432) lsm4 (ENSAOCG00000006414) PGPEP1 (ENSAOCG00000006393) upf1 (ENSAOCG00000006352) ddx49 (ENSAOCG00000006257) homer3b (ENSAOCG00000006203) uba52 (ENSAOCG00000006176) ENSAOCG00000006158 Spiny chromis MODERN SPECIES 1139 kank3 (ENSAPOG00000007608) #22 ENSAPOG00000007566 ENSAPOG00000007539 ENSAPOG00000000203 ENSAPOG00000007494 ENSAPOG00000007413 ENSAPOG00000007410 mpv17l2 (ENSAPOG00000007403) Bicolor damselfish MODERN SPECIES 393 ENSSPAG00000003255 ENSSPAG00000003242 pex11g (ENSSPAG00000003220) APBA3 (ENSSPAG00000003169) ABCA7 (ENSSPAG00000002631) r3hdm4 (ENSSPAG00000002562) ENSSPAG00000002527 ENSSPAG00000002509 ENSSPAG00000002503 ndufs7 (ENSSPAG00000002496) gamt (ENSSPAG00000002470) dazap1 (ENSSPAG00000002402) dpp9 (ENSSPAG00000002342) ANGPTL4 (ENSSPAG00000002327) ENSSPAG00000002318 kank3 (ENSSPAG00000002295) #22 Cichlidae ANCESTRAL SPECIES 17 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Pseudocrenilabrinae ANCESTRAL SPECIES 6 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 3 ENSGT00390000000259.k.b ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00940000173859 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b.a ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Haplochromini ANCESTRAL SPECIES 23 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000176916.a.b ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b.a ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B.h ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Haplochromini_A ANCESTRAL SPECIES 26 ENSGT00390000000259.k.b ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b.a ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B.h ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Haplochromini_B ANCESTRAL SPECIES 29 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT00940000164472.a.b.a.b.a.a.a.b.a.b.a.a.a.a.a.a ENSGT00940000164472.a.b.a.b.a.a.a.b.a.b.a.a.a.a.a.b ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b.a ENSGT00940000164492.a.b ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00980000199531 ENSGT00630000089884.B.h ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a Zebra mbuna MODERN SPECIES 1097 pex11g (ENSMZEG00005016873) APBA3 (ENSMZEG00005016866) ABCA7 (ENSMZEG00005016854) r3hdm4 (ENSMZEG00005016849) ENSMZEG00005016845 ENSMZEG00005016842 ENSMZEG00005016835 ENSMZEG00005016832 ENSMZEG00005016831 ENSMZEG00005016821 ENSMZEG00005016799 ndufs7 (ENSMZEG00005016790) gamt (ENSMZEG00005016774) dazap1 (ENSMZEG00005016739) dpp9 (ENSMZEG00005016729) kank3 (ENSMZEG00005016722) #22 PIK3R2 (ENSMZEG00005016715) ENSMZEG00005016600 ENSMZEG00005016516 mpv17l2 (ENSMZEG00005016485) RAB3A (ENSMZEG00005016480) JUND (ENSMZEG00005016474) ENSMZEG00005016461 ENSMZEG00005016429 lsm4 (ENSMZEG00005016420) PGPEP1 (ENSMZEG00005016414) upf1 (ENSMZEG00005016386) ddx49 (ENSMZEG00005016366) homer3b (ENSMZEG00005016352) uba52 (ENSMZEG00005016348) arrdc2 (ENSMZEG00005016330) Eastern happy MODERN SPECIES 6 ENSACLG00000024302 pex11g (ENSACLG00000024300) APBA3 (ENSACLG00000024293) ABCA7 (ENSACLG00000023645) r3hdm4 (ENSACLG00000023541) ENSACLG00000023527 ARID3A (ENSACLG00000023510) ENSACLG00000023503 ENSACLG00000023392 ENSACLG00000023366 ENSACLG00000023358 ndufs7 (ENSACLG00000023331) gamt (ENSACLG00000023301) dazap1 (ENSACLG00000023187) dpp9 (ENSACLG00000023088) kank3 (ENSACLG00000023059) #22 PIK3R2 (ENSACLG00000023014) ENSACLG00000022992 ENSACLG00000022971 ENSACLG00000022919 mpv17l2 (ENSACLG00000022858) RAB3A (ENSACLG00000022842) JUND (ENSACLG00000022830) ENSACLG00000022796 ENSACLG00000022763 ENSACLG00000022747 lsm4 (ENSACLG00000022738) PGPEP1 (ENSACLG00000022719) upf1 (ENSACLG00000022630) ddx49 (ENSACLG00000022538) ENSACLG00000022523 P. nyererei MODERN SPECIES 331 tmem38a (ENSPNYG00000018695) MED26 (ENSPNYG00000018687) slc35e1 (ENSPNYG00000018668) ENSPNYG00000018514 ENSPNYG00000018476 ENSPNYG00000018462 ENSPNYG00000018444 APBA3 (ENSPNYG00000018436) ABCA7 (ENSPNYG00000017647) r3hdm4 (ENSPNYG00000017489) ENSPNYG00000017435 ndufs7 (ENSPNYG00000017396) gamt (ENSPNYG00000017366) dazap1 (ENSPNYG00000017318) dpp9 (ENSPNYG00000017246) kank3 (ENSPNYG00000017230) #22 PIK3R2 (ENSPNYG00000017179) ENSPNYG00000017142 ENSPNYG00000017124 ENSPNYG00000017013 mpv17l2 (ENSPNYG00000016973) RAB3A (ENSPNYG00000016958) JUND (ENSPNYG00000016948) ENSPNYG00000016922 ENSPNYG00000016888 ENSPNYG00000016862 RNF213 (ENSPNYG00000016824) ENSPNYG00000016806 lsm4 (ENSPNYG00000016794) PGPEP1 (ENSPNYG00000016781) upf1 (ENSPNYG00000016731) Burton s mouthbrooder MODERN SPECIES 445 ENSHBUG00000015372 ENSHBUG00000015208 ENSHBUG00000015195 pex11g (ENSHBUG00000015186) APBA3 (ENSHBUG00000015174) ABCA7 (ENSHBUG00000015093) r3hdm4 (ENSHBUG00000014810) ENSHBUG00000014804 ENSHBUG00000014790 ENSHBUG00000014782 ENSHBUG00000014762 ndufs7 (ENSHBUG00000014758) gamt (ENSHBUG00000014738) dazap1 (ENSHBUG00000014707) dpp9 (ENSHBUG00000014632) kank3 (ENSHBUG00000014579) #22 PIK3R2 (ENSHBUG00000014543) ENSHBUG00000014267 ENSHBUG00000001043 mpv17l2 (ENSHBUG00000014142) RAB3A (ENSHBUG00000014123) JUND (ENSHBUG00000014103) Lyretail cichlid MODERN SPECIES 548 kank3 (ENSNBRG00000024395) #22 ENSNBRG00000024396 ENSNBRG00000024397 mpv17l2 (ENSNBRG00000024398) RAB3A (ENSNBRG00000024399) JUND (ENSNBRG00000024400) ENSNBRG00000024401 ENSNBRG00000024402 Nile tilapia MODERN SPECIES 6 ENSONIG00000027708 ENSONIG00000034255 pex11g (ENSONIG00000012662) APBA3 (ENSONIG00000012667) ABCA7 (ENSONIG00000027392) r3hdm4 (ENSONIG00000012675) ENSONIG00000027458 ENSONIG00000012677 ENSONIG00000012681 ENSONIG00000034388 ndufs7 (ENSONIG00000012682) gamt (ENSONIG00000037958) dazap1 (ENSONIG00000012689) dpp9 (ENSONIG00000012693) ENSONIG00000012697 kank3 (ENSONIG00000031491) #22 ENSONIG00000038195 PIK3R2 (ENSONIG00000012700) ENSONIG00000012705 ENSONIG00000012712 mpv17l2 (ENSONIG00000012718) RAB3A (ENSONIG00000039875) JUND (ENSONIG00000021047) RNF213 (ENSONIG00000012722) ENSONIG00000042827 lsm4 (ENSONIG00000012724) PGPEP1 (ENSONIG00000027578) upf1 (ENSONIG00000012729) ddx49 (ENSONIG00000012731) homer3b (ENSONIG00000012736) arrdc2 (ENSONIG00000012745) Midas cichlid MODERN SPECIES 135 kank3 (ENSACIG00000010283) #22 PIK3R2 (ENSACIG00000010325) ENSACIG00000010594 ENSACIG00000010633 ENSACIG00000010754 ENSACIG00000010872 mpv17l2 (ENSACIG00000010883) RAB3A (ENSACIG00000010910) JUND (ENSACIG00000010927) ENSACIG00000010934 ENSACIG00000010951 PGPEP1 (ENSACIG00000010964) upf1 (ENSACIG00000010985) ddx49 (ENSACIG00000011029) homer3b (ENSACIG00000011066) uba52 (ENSACIG00000011090) Percomorphaceae_C ANCESTRAL SPECIES 8 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 Percomorphaceae_D ANCESTRAL SPECIES 8 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f Anabantaria ANCESTRAL SPECIES 7 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a ENSGT00940000153593.f Anabantoidei ANCESTRAL SPECIES 6 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT00940000160620.t.a ENSGT00940000160620.s ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f Climbing perch MODERN SPECIES 17 ENSATEG00000015007 ENSATEG00000015022 ENSATEG00000015054 ENSATEG00000015103 ENSATEG00000015194 r3hdm4 (ENSATEG00000015913) ENSATEG00000015951 ENSATEG00000015961 ENSATEG00000015984 ndufs7 (ENSATEG00000028250) ENSATEG00000011600 gamt (ENSATEG00000027398) dazap1 (ENSATEG00000016043) ENSATEG00000016081 ENSATEG00000016144 ENSATEG00000016160 #22 ENSATEG00000016181 ENSATEG00000016205 ENSATEG00000016239 ENSATEG00000016280 ENSATEG00000026846 ENSATEG00000016430 ENSATEG00000016517 ENSATEG00000027208 JUND (ENSATEG00000016543) LSM4 (ENSATEG00000027669) PGPEP1 (ENSATEG00000016574) ENSATEG00000016606 ddx49 (ENSATEG00000016661) homer3b (ENSATEG00000016715) ENSATEG00000026189 Siamese fighting fish MODERN SPECIES 15 ENSBSLG00000011175 ENSBSLG00000011161 ENSBSLG00000011147 pex11g (ENSBSLG00000011145) APBA3 (ENSBSLG00000011114) ABCA7 (ENSBSLG00000010993) r3hdm4 (ENSBSLG00000010977) ARID3A (ENSBSLG00000010909) ENSBSLG00000010855 ENSBSLG00000010832 ndufs7 (ENSBSLG00000010672) gamt (ENSBSLG00000010571) dazap1 (ENSBSLG00000010541) dpp9 (ENSBSLG00000009815) ANGPTL4 (ENSBSLG00000009723) kank3 (ENSBSLG00000009686) #22 MAST3 (ENSBSLG00000009091) ndufa7 (ENSBSLG00000009047) ENSBSLG00000009013 ENSBSLG00000008989 B3GNT3 (ENSBSLG00000008981) B3GNT3 (ENSBSLG00000008968) B3GNT3 (ENSBSLG00000008950) ENSBSLG00000008930 ENSBSLG00000008901 B3GNT3 (ENSBSLG00000008786) lama1 (ENSBSLG00000007979) ENSBSLG00000007865 ENSBSLG00000007823 ENSBSLG00000007804 ENSBSLG00000007789 Zig-zag eel MODERN SPECIES 18 ENSMAMG00000003892 ENSMAMG00000027876 ENSMAMG00000003969 ENSMAMG00000003983 ENSMAMG00000004046 ENSMAMG00000004183 r3hdm4 (ENSMAMG00000026808) ENSMAMG00000005674 ENSMAMG00000005699 ENSMAMG00000005706 ndufs7 (ENSMAMG00000005713) gamt (ENSMAMG00000005723) dazap1 (ENSMAMG00000005746) ENSMAMG00000005795 ENSMAMG00000005887 ENSMAMG00000005899 #22 ENSMAMG00000005911 ENSMAMG00000005921 ENSMAMG00000005943 ENSMAMG00000005974 ENSMAMG00000006130 ENSMAMG00000025742 JUND (ENSMAMG00000006167) lsm4 (ENSMAMG00000006190) PGPEP1 (ENSMAMG00000024862) ENSMAMG00000006231 ddx49 (ENSMAMG00000006297) ENSMAMG00000006337 ENSMAMG00000026989 ENSMAMG00000006395 ENSMAMG00000006412 Carangaria ANCESTRAL SPECIES 7 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00510000053055 Carangaria_A ANCESTRAL SPECIES 3 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00510000053055 Seriola ANCESTRAL SPECIES ENSGT01050000244902.a.a.a.b ENSGT00940000155567 ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00510000053055 Greater amberjack MODERN SPECIES ENSSDUG00000008250 ENSSDUG00000008285 ENSSDUG00000008295 pex11g (ENSSDUG00000008318) APBA3 (ENSSDUG00000008330) ENSSDUG00000008368 r3hdm4 (ENSSDUG00000008488) ENSSDUG00000008498 ENSSDUG00000008517 ENSSDUG00000008551 ndufs7 (ENSSDUG00000008562) gamt (ENSSDUG00000008591) dazap1 (ENSSDUG00000008609) dpp9 (ENSSDUG00000008662) ENSSDUG00000008717 kank3 (ENSSDUG00000008728) #22 ENSSDUG00000008756 PIK3R2 (ENSSDUG00000008807) ENSSDUG00000008830 ENSSDUG00000008901 mpv17l2 (ENSSDUG00000009459) RAB3A (ENSSDUG00000009466) JUND (ENSSDUG00000009479) ENSSDUG00000009495 lsm4 (ENSSDUG00000009588) PGPEP1 (ENSSDUG00000009602) upf1 (ENSSDUG00000009629) ddx49 (ENSSDUG00000009696) homer3b (ENSSDUG00000009743) uba52 (ENSSDUG00000009763) ENSSDUG00000009780 Yellowtail amberjack MODERN SPECIES 2229 kank3 (ENSSLDG00000006343) #22 ENSSLDG00000006367 ENSSLDG00000006382 ENSSLDG00000006422 ENSSLDG00000006473 mpv17l2 (ENSSLDG00000006616) RAB3A (ENSSLDG00000006642) JUND (ENSSLDG00000006657) RNF213 (ENSSLDG00000006691) lsm4 (ENSSLDG00000006827) PGPEP1 (ENSSLDG00000006853) upf1 (ENSSLDG00000006878) ddx49 (ENSSLDG00000006958) homer3b (ENSSLDG00000007019) uba52 (ENSSLDG00000007121) arrdc2 (ENSSLDG00000007155) Barramundi perch MODERN SPECIES 469 ENSLCAG00010010164 ENSLCAG00010010160 pex11g (ENSLCAG00010010158) APBA3 (ENSLCAG00010010156) ENSLCAG00010010103 r3hdm4 (ENSLCAG00010010085) ENSLCAG00010010081 ENSLCAG00010010075 ENSLCAG00010010068 ndufs7 (ENSLCAG00010010059) gamt (ENSLCAG00010010052) dazap1 (ENSLCAG00010009993) dpp9 (ENSLCAG00010009600) ENSLCAG00010009489 kank3 (ENSLCAG00010009480) #22 ENSLCAG00010009457 Pleuronectoidei ANCESTRAL SPECIES 20 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000159994 ENSGT00940000165866 Tongue sole MODERN SPECIES 11 dynlt2b (ENSCSEG00000015662) hykk.2 (ENSCSEG00000015665) NMUR1 (ENSCSEG00000015670) ENSCSEG00000015675 ENSCSEG00000015681 ENSCSEG00000015690 kif14 (ENSCSEG00000015702) ddx59 (ENSCSEG00000015765) camsap2a (ENSCSEG00000015778) WDR47 (ENSCSEG00000015820) lim2.2 (ENSCSEG00000015825) ENSCSEG00000015828 gipc3 (ENSCSEG00000015838) tbxa2r (ENSCSEG00000015857) PTPRS (ENSCSEG00000015874) kank3 (ENSCSEG00000015957) #22 ENSCSEG00000015978 ENSCSEG00000016009 ENSCSEG00000016022 mpv17l2 (ENSCSEG00000016094) RAB3A (ENSCSEG00000016102) JUND (ENSCSEG00000016119) lsm4 (ENSCSEG00000016127) ddx49 (ENSCSEG00000016139) upf1 (ENSCSEG00000016159) PGPEP1 (ENSCSEG00000016180) uba52 (ENSCSEG00000016184) homer3b (ENSCSEG00000016190) arrdc2 (ENSCSEG00000016199) RABGAP1L (ENSCSEG00000016222) ENSCSEG00000016297 Turbot MODERN SPECIES 3 ENSSMAG00000021183 ENSSMAG00000021182 ENSSMAG00000028972 ENSSMAG00000021179 ENSSMAG00000021178 ENSSMAG00000021092 r3hdm4 (ENSSMAG00000021090) ENSSMAG00000021063 ENSSMAG00000021062 ENSSMAG00000021061 ndufs7 (ENSSMAG00000021060) gamt (ENSSMAG00000021059) dazap1 (ENSSMAG00000021047) ENSSMAG00000021039 ENSSMAG00000021038 ENSSMAG00000021036 #22 ENSSMAG00000021035 ENSSMAG00000021034 ENSSMAG00000021032 ENSSMAG00000021031 ENSSMAG00000021030 ENSSMAG00000021024 ENSSMAG00000021023 ENSSMAG00000021022 JUND (ENSSMAG00000021021) lsm4 (ENSSMAG00000037170) PGPEP1 (ENSSMAG00000028380) ENSSMAG00000021018 ddx49 (ENSSMAG00000021016) ENSSMAG00000021015 ENSSMAG00000021014 Eupercaria ANCESTRAL SPECIES 8 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00740000117196 ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 Tetraodontidae ANCESTRAL SPECIES 5 ENSGT00390000014626 ENSGT00390000000259.k.b ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620.q ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f ENSGT00940000159994 ENSGT00940000165866 Fugu MODERN SPECIES 12 MED26 (ENSTRUG00000006915) slc35e1 (ENSTRUG00000006851) ENSTRUG00000029712 ENSTRUG00000031161 ENSTRUG00000020402 pex11g (ENSTRUG00000023797) APBA3 (ENSTRUG00000006653) ENSTRUG00000004953 r3hdm4 (ENSTRUG00000023971) ENSTRUG00000004701 aldh9a1a.1 (ENSTRUG00000003843) ndufs7 (ENSTRUG00000003488) gamt (ENSTRUG00000025254) dazap1 (ENSTRUG00000002467) ANGPTL4 (ENSTRUG00000007525) kank3 (ENSTRUG00000024316) #22 ENSTRUG00000027278 PIK3R2 (ENSTRUG00000026321) ENSTRUG00000023627 ENSTRUG00000006287 ENSTRUG00000022546 ENSTRUG00000030819 mpv17l2 (ENSTRUG00000006276) mpv17l2 (ENSTRUG00000006130) RAB3A (ENSTRUG00000026699) JUND (ENSTRUG00000005979) lsm4 (ENSTRUG00000021737) PGPEP1 (ENSTRUG00000005768) upf1 (ENSTRUG00000005131) ddx49 (ENSTRUG00000021524) homer3b (ENSTRUG00000025814) Tetraodon MODERN SPECIES ENSTNIG00000006086 ENSTNIG00000006087 ENSTNIG00000000364 pex11g (ENSTNIG00000006088) APBA3 (ENSTNIG00000006089) ABCA7 (ENSTNIG00000006717) r3hdm4 (ENSTNIG00000002020) ARID3A (ENSTNIG00000006718) aldh9a1a.1 (ENSTNIG00000006719) ENSTNIG00000001830 ENSTNIG00000010204 ndufs7 (ENSTNIG00000010203) gamt (ENSTNIG00000010202) dazap1 (ENSTNIG00000010201) ANGPTL4 (ENSTNIG00000010200) kank3 (ENSTNIG00000010199) #22 ENSTNIG00000010198 PIK3R2 (ENSTNIG00000010197) ENSTNIG00000010196 ENSTNIG00000010195 mpv17l2 (ENSTNIG00000010194) RAB3A (ENSTNIG00000010193) JUND (ENSTNIG00000010192) lsm4 (ENSTNIG00000010191) PGPEP1 (ENSTNIG00000010190) upf1 (ENSTNIG00000010189) ddx49 (ENSTNIG00000010188) homer3b (ENSTNIG00000010187) uba52 (ENSTNIG00000010186) arrdc2 (ENSTNIG00000010185) ENSTNIG00000010184 Eupecaria_A ANCESTRAL SPECIES 11 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT01010000223141 ENSGT00940000177302 ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a Ballan wrasse MODERN SPECIES 13 slc35e1 (ENSLBEG00000001865) ENSLBEG00000001119 ENSLBEG00000001023 pex11g (ENSLBEG00000001015) APBA3 (ENSLBEG00000000999) ENSLBEG00000000748 r3hdm4 (ENSLBEG00000000730) ENSLBEG00000000686 ENSLBEG00000000637 ENSLBEG00000000628 ndufs7 (ENSLBEG00000000621) gamt (ENSLBEG00000000587) dazap1 (ENSLBEG00000000569) dpp9 (ENSLBEG00000000450) ANGPTL4 (ENSLBEG00000000358) kank3 (ENSLBEG00000000346) #22 ENSLBEG00000000265 ENSLBEG00000000224 ENSLBEG00000000212 ENSLBEG00000000027 ENSLBEG00000000017 ENSLBEG00000000014 mpv17l2 (ENSLBEG00000000003) mpv17l2 (ENSLBEG00000028170) RAB3A (ENSLBEG00000028160) JUND (ENSLBEG00000028152) ENSLBEG00000028144 RNF213 (ENSLBEG00000028022) lsm4 (ENSLBEG00000027930) PGPEP1 (ENSLBEG00000027918) upf1 (ENSLBEG00000027848) Eupecaria_B ANCESTRAL SPECIES 10 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a ENSGT00940000153593.f Eupecaria_C ANCESTRAL SPECIES 4 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620.l ENSGT00940000160620.k ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f Eupercaria_incertae_sedis ANCESTRAL SPECIES 3 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620.l ENSGT00940000160620.k ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.f European seabass MODERN SPECIES 17 MED26 (ENSDLAG00005028045) ENSDLAG00005025267 ENSDLAG00005025265 ENSDLAG00005028423 ENSDLAG00005025258 ENSDLAG00005022813 ENSDLAG00005025220 ENSDLAG00005022677 ENSDLAG00005022673 ENSDLAG00005033217 ndufs7 (ENSDLAG00005022657) gamt (ENSDLAG00005022647) dazap1 (ENSDLAG00005022514) ENSDLAG00005021138 ENSDLAG00005021102 ENSDLAG00005026591 #22 ENSDLAG00005021051 ENSDLAG00005023362 ENSDLAG00005031850 ENSDLAG00005021042 ENSDLAG00005021026 ENSDLAG00005020806 ENSDLAG00005027597 ENSDLAG00005032197 ENSDLAG00005026617 JUND (ENSDLAG00005033861) ENSDLAG00005020558 lsm4 (ENSDLAG00005031255) PGPEP1 (ENSDLAG00005020538) ENSDLAG00005019938 ddx49 (ENSDLAG00005019883) Large yellow croaker MODERN SPECIES 489 ENSLCRG00005019330 ENSLCRG00005019331 ENSLCRG00005019332 pex11g (ENSLCRG00005019334) APBA3 (ENSLCRG00005019335) ENSLCRG00005019416 r3hdm4 (ENSLCRG00005019627) ENSLCRG00005019628 ENSLCRG00005019629 ENSLCRG00005019632 ndufs7 (ENSLCRG00005019633) gamt (ENSLCRG00005019635) dazap1 (ENSLCRG00005019640) dpp9 (ENSLCRG00005019670) ENSLCRG00005020411 kank3 (ENSLCRG00005020413) #22 ENSLCRG00005020415 ENSLCRG00005020418 PIK3R2 (ENSLCRG00005020420) ENSLCRG00005020421 ENSLCRG00005020424 mpv17l2 (ENSLCRG00005020442) RAB3A (ENSLCRG00005020443) JUND (ENSLCRG00005020445) lsm4 (ENSLCRG00005020447) PGPEP1 (ENSLCRG00005020449) upf1 (ENSLCRG00005020453) ddx49 (ENSLCRG00005020457) homer3b (ENSLCRG00005020461) uba52 (ENSLCRG00005020462) ENSLCRG00005020464 Gilthead seabream MODERN SPECIES 2 atg4c (ENSSAUG00010014660) foxd3 (ENSSAUG00010014658) alg6 (ENSSAUG00010014655) pgm1 (ENSSAUG00010014466) ROR1 (ENSSAUG00010014450) CACHD1 (ENSSAUG00010013527) RAVER2 (ENSSAUG00010013513) jak1 (ENSSAUG00010010552) ak4 (ENSSAUG00010010528) DNAJC6 (ENSSAUG00010010521) ndufs7 (ENSSAUG00010010516) gamt (ENSSAUG00010010513) dazap1 (ENSSAUG00010010505) dpp9 (ENSSAUG00010009992) ANGPTL4 (ENSSAUG00010009976) kank3 (ENSSAUG00010009972) #22 ENSSAUG00010009970 ENSSAUG00010009969 ENSSAUG00010009968 ENSSAUG00010009871 mpv17l2 (ENSSAUG00010009857) RAB3A (ENSSAUG00010009796) JUND (ENSSAUG00010009792) ENSSAUG00010009786 lsm4 (ENSSAUG00010009780) PGPEP1 (ENSSAUG00010009775) upf1 (ENSSAUG00010009750) ddx49 (ENSSAUG00010009744) homer3b (ENSSAUG00010009689) uba52 (ENSSAUG00010009682) ENSSAUG00010009680 Perciformes ANCESTRAL SPECIES 8 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a ENSGT00940000177177 Cottioidei ANCESTRAL SPECIES 5 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00630000089884.B ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a ENSGT00940000177177 ENSGT00940000159994 Lumpfish DUPLICATION Lumpfish MODERN SPECIES 19 slc35e1 (ENSCLMG00005009646) ENSCLMG00005009570 pex11g (ENSCLMG00005009567) APBA3 (ENSCLMG00005009565) ABCA7 (ENSCLMG00005007451) ENSCLMG00005007421 r3hdm4 (ENSCLMG00005007420) ARID3A (ENSCLMG00005007417) ENSCLMG00005007416 ENSCLMG00005007413 ndufs7 (ENSCLMG00005007408) gamt (ENSCLMG00005007407) dazap1 (ENSCLMG00005007402) DPP9 (ENSCLMG00005000982) ENSCLMG00005000913 kank3 (ENSCLMG00005000911) #22 ENSCLMG00005000908 #22 PIK3R2 (ENSCLMG00005000904) ENSCLMG00005000888 ENSCLMG00005000884 ENSCLMG00005000721 ENSCLMG00005000696 MPV17L2 (ENSCLMG00005000693) JUND (ENSCLMG00005000692) RNF213 (ENSCLMG00005000689) ENSCLMG00005000681 mpv17l2 (ENSCLMG00005000680) RAB3A (ENSCLMG00005000679) JUND (ENSCLMG00005000676) ENSCLMG00005000675 lsm4 (ENSCLMG00005000673) Lumpfish MODERN SPECIES 19 ENSCLMG00005009570 pex11g (ENSCLMG00005009567) APBA3 (ENSCLMG00005009565) ABCA7 (ENSCLMG00005007451) ENSCLMG00005007421 r3hdm4 (ENSCLMG00005007420) ARID3A (ENSCLMG00005007417) ENSCLMG00005007416 ENSCLMG00005007413 ndufs7 (ENSCLMG00005007408) gamt (ENSCLMG00005007407) dazap1 (ENSCLMG00005007402) DPP9 (ENSCLMG00005000982) ENSCLMG00005000913 kank3 (ENSCLMG00005000911) #22 ENSCLMG00005000908 #22 PIK3R2 (ENSCLMG00005000904) ENSCLMG00005000888 ENSCLMG00005000884 ENSCLMG00005000721 ENSCLMG00005000696 MPV17L2 (ENSCLMG00005000693) JUND (ENSCLMG00005000692) RNF213 (ENSCLMG00005000689) ENSCLMG00005000681 mpv17l2 (ENSCLMG00005000680) RAB3A (ENSCLMG00005000679) JUND (ENSCLMG00005000676) ENSCLMG00005000675 lsm4 (ENSCLMG00005000673) PGPEP1 (ENSCLMG00005000672) Stickleback MODERN SPECIES 8 ENSGACG00000008445 pex11g (ENSGACG00000008438) ENSGACG00000008437 APBA3 (ENSGACG00000008431) ABCA7 (ENSGACG00000008403) r3hdm4 (ENSGACG00000008385) ARID3A (ENSGACG00000008378) ENSGACG00000008372 ENSGACG00000008366 ENSGACG00000008364 ndufs7 (ENSGACG00000008341) gamt (ENSGACG00000008306) dazap1 (ENSGACG00000008259) dpp9 (ENSGACG00000008230) ENSGACG00000008217 kank3 (ENSGACG00000008209) #22 PIK3R2 (ENSGACG00000008201) ENSGACG00000008194 ENSGACG00000008183 mpv17l2 (ENSGACG00000008179) RAB3A (ENSGACG00000008173) lsm4 (ENSGACG00000008140) PGPEP1 (ENSGACG00000008132) upf1 (ENSGACG00000008078) ddx49 (ENSGACG00000008047) homer3b (ENSGACG00000008041) uba52 (ENSGACG00000008021) arrdc2 (ENSGACG00000007983) ENSGACG00000007974 ifi44f1 (ENSGACG00000007958) GPR52 (ENSGACG00000007955) Perciformes_a ANCESTRAL SPECIES 6 ENSGT00940000159007 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000013481.c.b.b.c ENSGT00940000157050.i.b ENSGT00940000164804.b ENSGT00940000164492.a.b ENSGT00940000160620 ENSGT00940000158959.a.a ENSGT00940000162806.b.b ENSGT00610000086173 ENSGT00390000015368.a.a.d ENSGT00940000157413.g ENSGT00730000111231 ENSGT00940000158081.o.a ENSGT00940000153593.e.a ENSGT00510000053055 ENSGT00940000159994 Channel bull blenny MODERN SPECIES 18 ENSCGOG00000007946 ENSCGOG00000007943 pex11g (ENSCGOG00000007942) APBA3 (ENSCGOG00000007780) ABCA7 (ENSCGOG00000002941) r3hdm4 (ENSCGOG00000017652) ENSCGOG00000017650 ENSCGOG00000017647 ENSCGOG00000017644 ndufs7 (ENSCGOG00000017626) gamt (ENSCGOG00000017607) dazap1 (ENSCGOG00000017363) dpp9 (ENSCGOG00000017232) ENSCGOG00000017227 ENSCGOG00000017226 kank3 (ENSCGOG00000017225) #22 ENSCGOG00000017212 PIK3R2 (ENSCGOG00000017171) ENSCGOG00000017163 ENSCGOG00000014210 mpv17l2 (ENSCGOG00000014123) RAB3A (ENSCGOG00000014120) JUND (ENSCGOG00000014117) lsm4 (ENSCGOG00000014071) PGPEP1 (ENSCGOG00000014066) upf1 (ENSCGOG00000013710) ddx49 (ENSCGOG00000013513) homer3b (ENSCGOG00000013502) uba52 (ENSCGOG00000013477) arrdc2 (ENSCGOG00000013424) ENSCGOG00000013418 Pike perch MODERN SPECIES 189 ENSSLUG00000015515 ENSSLUG00000015509 ndufs7 (ENSSLUG00000015489) gamt (ENSSLUG00000015481) dazap1 (ENSSLUG00000015402) dpp9 (ENSSLUG00000014386) ENSSLUG00000014311 kank3 (ENSSLUG00000014301) #22 PIK3R2 (ENSSLUG00000014247) ENSSLUG00000014199 ENSSLUG00000014184 ENSSLUG00000014134 mpv17l2 (ENSSLUG00000014091) mpv17l2 (ENSSLUG00000014086) RAB3A (ENSSLUG00000014075) JUND (ENSSLUG00000014063) ENSSLUG00000014053 ENSSLUG00000014040 lsm4 (ENSSLUG00000014006) PGPEP1 (ENSSLUG00000013992) upf1 (ENSSLUG00000013934) ddx49 (ENSSLUG00000013910) homer3b (ENSSLUG00000013860) Tiger tail seahorse MODERN SPECIES 242 smim7 (ENSHCOG00000008127) slc35e1 (ENSHCOG00000008139) ENSHCOG00000008152 ENSHCOG00000008158 pex11g (ENSHCOG00000008204) APBA3 (ENSHCOG00000008269) ABCA7 (ENSHCOG00000008405) r3hdm4 (ENSHCOG00000008422) ARID3A (ENSHCOG00000008439) ENSHCOG00000008474 ndufs7 (ENSHCOG00000008486) gamt (ENSHCOG00000008513) dazap1 (ENSHCOG00000008541) dpp9 (ENSHCOG00000008576) ENSHCOG00000008623 kank3 (ENSHCOG00000008646) #22 PIK3R2 (ENSHCOG00000008706) ENSHCOG00000008726 ENSHCOG00000008760 ENSHCOG00000008775 mpv17l2 (ENSHCOG00000008778) RAB3A (ENSHCOG00000008803) JUND (ENSHCOG00000008809) lsm4 (ENSHCOG00000008819) PGPEP1 (ENSHCOG00000008832) upf1 (ENSHCOG00000008918) ddx49 (ENSHCOG00000008961) ENSHCOG00000008976 ENSHCOG00000009031 ndufa7 (ENSHCOG00000000285) ENSHCOG00000009050 Pinecone sodierfish MODERN SPECIES 18 slc35e1 (ENSMMDG00005007253) ENSMMDG00005007257 ENSMMDG00005007271 ENSMMDG00005007274 pex11g (ENSMMDG00005007276) APBA3 (ENSMMDG00005007281) ABCA7 (ENSMMDG00005007445) r3hdm4 (ENSMMDG00005007577) ENSMMDG00005007587 ENSMMDG00005007597 ndufs7 (ENSMMDG00005007610) gamt (ENSMMDG00005007621) dazap1 (ENSMMDG00005007645) dpp9 (ENSMMDG00005007858) ENSMMDG00005012801 kank3 (ENSMMDG00005012803) #22 PIK3R2 (ENSMMDG00005012807) ENSMMDG00005012879 ENSMMDG00005012912 mpv17l2 (ENSMMDG00005013066) RAB3A (ENSMMDG00005013068) JUND (ENSMMDG00005013070) ENSMMDG00005013072 lsm4 (ENSMMDG00005013075) PGPEP1 (ENSMMDG00005013080) upf1 (ENSMMDG00005013088) ddx49 (ENSMMDG00005013099) homer3b (ENSMMDG00005013182) ENSMMDG00005013190 uba52 (ENSMMDG00005013196) ENSMMDG00005013205 Cod MODERN SPECIES 3 MED26 (ENSGMOG00000025217) SLC35E1 (ENSGMOG00000001494) ENSGMOG00000001402 ENSGMOG00000032874 ENSGMOG00000001354 ENSGMOG00000022769 ENSGMOG00000001242 r3hdm4 (ENSGMOG00000001231) ENSGMOG00000001211 ENSGMOG00000026413 ENSGMOG00000037240 ndufs7 (ENSGMOG00000001183) gamt (ENSGMOG00000001163) dazap1 (ENSGMOG00000001142) ENSGMOG00000001102 ENSGMOG00000025666 #22 ENSGMOG00000014501 ENSGMOG00000033239 hykk.2 (ENSGMOG00000011872) ENSGMOG00000030821 ENSGMOG00000001438 polr2h (ENSGMOG00000001430) ENSGMOG00000001382 b3gnt7 (ENSGMOG00000027820) ncl (ENSGMOG00000001341) ENSGMOG00000023263 ENSGMOG00000001291 ENSGMOG00000026710 ENSGMOG00000026958 ENSGMOG00000001250 ENSGMOG00000001225 Protacanthopterygii ANCESTRAL SPECIES 13 ENSGT01050000244902.a.a.a.b ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00940000161989 ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a #22 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b ENSGT00940000155941.A ENSGT00390000018718 ENSGT00940000156442 ENSGT00940000161593 ENSGT00940000158154 ENSGT00730000110872.b.cb ENSGT00950000182928.B.d.b Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 30 ENSGT00940000172353 ENSGT00390000000259.k.b.a ENSGT00940000159007.l ENSGT01050000244902.a.a.a.b.a ENSGT00940000155567.wd ENSGT00530000063460.B.b ENSGT00940000160384.f ENSGT01020000231482 ENSGT00940000160899.m ENSGT01040000240503.A.a.b.b ENSGT00940000161989.b ENSGT00390000006565.b.d ENSGT00390000018061.q ENSGT00940000156757.f ENSGT00940000158174.a.b ENSGT00940000154886.a.a.c #22 ENSGT00390000006553 ENSGT00940000165170.c.b ENSGT00940000164521.e ENSGT00940000159134.m ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482.h ENSGT00950000182904.a.b.b.b.b ENSGT00940000155941.A.m.b ENSGT00940000156442.f ENSGT00940000161593.c ENSGT00940000158154.c ENSGT00730000110872.b.cb.c ENSGT00950000182928.B.d.b.r ENSGT00390000000312.m.a Salmoninae_a ANCESTRAL SPECIES 22 ENSGT00390000014626.n ENSGT00390000000259.k.b.a ENSGT00940000159007.l ENSGT01050000244902.a.a.a.b.a ENSGT00940000155567.wd ENSGT00530000063460.B.b ENSGT00940000160384.f ENSGT01020000231482 ENSGT00940000160899.m ENSGT01040000240503.A.a.b.b ENSGT00940000161989.b ENSGT00390000006565.b.d ENSGT00390000018061.q ENSGT00940000156757.f ENSGT00940000158174.a.b ENSGT00940000154886.a.a.c #22 ENSGT00940000175596.b ENSGT00940000165170.c.a ENSGT00940000159134.n ENSGT00390000012482.g ENSGT00950000182904.a.b.b.b.a ENSGT00940000155941.A.m.a ENSGT00390000018718 ENSGT00940000156442.e ENSGT00940000161593.d ENSGT00940000158154.d ENSGT00730000110872.b.cb.d ENSGT00950000182928.B.d.b.q ENSGT00390000000312.m.b ENSGT00940000156845.oc.a.b ENSGT01050000244887.B.e Salmo ANCESTRAL SPECIES 14 ENSGT00390000000259.k.b.a ENSGT00940000159007.l ENSGT01050000244902.a.a.a.b.a ENSGT00940000155567.wd ENSGT00530000063460.B.b ENSGT00940000160384.f ENSGT01020000231482 ENSGT00940000160899.m ENSGT01040000240503.A.a.b.b ENSGT00390000006565.b.d ENSGT00940000161989.b ENSGT00390000006565.a.a ENSGT00390000018061.q ENSGT00940000156757.f ENSGT00940000158174.a.b ENSGT00940000154886.a.a.c #22 ENSGT00940000175596.b ENSGT00940000165170.c.a ENSGT01010000228826 ENSGT00940000159134.n ENSGT00390000012482.g ENSGT00950000182904.a.b.b.b.a ENSGT00940000155941.A.m.a ENSGT00390000018718 ENSGT00940000156442.e ENSGT00940000161593.d ENSGT00940000179649 ENSGT00730000110872.b.cb.d ENSGT00950000182928.B.d.b.q ENSGT00390000000312.m.b ENSGT00940000156845.oc.a.b River trout MODERN SPECIES 14 comp (ENSSTUG00000008752) tmem38a (ENSSTUG00000010346) smim7 (ENSSTUG00000010364) MED26 (ENSSTUG00000010379) slc35e1 (ENSSTUG00000010394) ENSSTUG00000010431 ENSSTUG00000010444 ENSSTUG00000010460 APBA3 (ENSSTUG00000010497) ENSSTUG00000010614 ENSSTUG00000010631 ENSSTUG00000010648 ndufs7 (ENSSTUG00000010657) gamt (ENSSTUG00000010691) dazap1 (ENSSTUG00000010720) kank3 (ENSSTUG00000011296) #22 ENSSTUG00000011306 ENSSTUG00000011324 ENSSTUG00000011352 B3GNT3 (ENSSTUG00000011362) ccdc124 (ENSSTUG00000011372) KCNN1 (ENSSTUG00000011398) ATP13A3 (ENSSTUG00000011598) tmem44 (ENSSTUG00000014105) lsg1 (ENSSTUG00000014124) fam43a (ENSSTUG00000014809) ENSSTUG00000014835 ENSSTUG00000014843 srsf11 (ENSSTUG00000014868) ankrd13c (ENSSTUG00000014913) CTH (ENSSTUG00000015078) Atlantic salmon MODERN SPECIES 1 ENSSSAG00000122198 SLC35E1 (ENSSSAG00000064632) ENSSSAG00000106725 ENSSSAG00000064646 ENSSSAG00000118346 ENSSSAG00000064657 ENSSSAG00000064673 ENSSSAG00000064756 ENSSSAG00000064766 CTDS2 (ENSSSAG00000064784) ENSSSAG00000064822 NDUFS7 (ENSSSAG00000064839) gamt (ENSSSAG00000064919) DAZP1 (ENSSSAG00000064945) ENSSSAG00000084666 ENSSSAG00000065142 #22 ENSSSAG00000089451 ENSSSAG00000103468 ENSSSAG00000065183 ENSSSAG00000089621 ENSSSAG00000065243 ATP13A3 (ENSSSAG00000066487) ENSSSAG00000068692 fam43a (ENSSSAG00000068727) ENSSSAG00000082130 ENSSSAG00000068730 SFR11 (ENSSSAG00000068733) ENSSSAG00000098287 ENSSSAG00000068750 cgl (ENSSSAG00000068808) ENSSSAG00000069274 Oncorhynchus ANCESTRAL SPECIES 8 ENSGT00390000014626.n.a ENSGT00390000000259.k.b.a ENSGT00940000159007.l ENSGT01050000244902.a.a.a.b.a ENSGT00940000155567.wd ENSGT00530000063460.B.b ENSGT00940000160384.f ENSGT01020000231482 ENSGT00940000160899.m ENSGT01040000240503.A.a.b.b ENSGT00940000161989.b ENSGT00390000006565.b.d ENSGT00390000018061.q ENSGT00940000156757.f ENSGT00940000158174.a.b ENSGT00940000154886.a.a.c #22 ENSGT00940000175596.b ENSGT00390000006553 ENSGT00940000165170.c.a ENSGT00940000159134.n ENSGT00390000012482.g ENSGT00950000182904.a.b.b.b.a ENSGT00940000155941.A.m.a ENSGT00390000018718 ENSGT00940000156442.e ENSGT00940000161593.d ENSGT00940000158154.d ENSGT00730000110872.b.cb.d ENSGT00950000182928.B.d.b.q ENSGT00390000000312.m.b ENSGT00940000156845.oc.a.b Oncorhynchus_a ANCESTRAL SPECIES 14 ENSGT00390000014626.n.a ENSGT00390000000259.k.b.a ENSGT00940000159007.l ENSGT01050000244902.a.a.a.b.a ENSGT00940000155567.wd ENSGT00530000063460.B.b ENSGT00940000160384.f ENSGT01020000231482 ENSGT00940000160899.m ENSGT01040000240503.A.a.b.b ENSGT00940000161989.b ENSGT00390000006565.b.d ENSGT00390000018061.q ENSGT00940000156757.f ENSGT00940000158174.a.b ENSGT00940000154886.a.a.c #22 ENSGT00390000006553 ENSGT00940000165170.c.a ENSGT00940000159134.n ENSGT00390000012482.g ENSGT00950000182904.a.b.b.b.a ENSGT00940000155941.A.m.a ENSGT00390000018718 ENSGT00940000156442.e ENSGT00940000161593.d ENSGT00940000158154.d ENSGT00730000110872.b.cb.d ENSGT00950000182928.B.d.b.q ENSGT00390000000312.m.b ENSGT00940000156845.oc.a.b ENSGT01050000244887.B.e Coho salmon MODERN SPECIES 4 ENSOKIG00005013320 comp (ENSOKIG00005013175) tmem38a (ENSOKIG00005013148) MED26 (ENSOKIG00005013141) slc35e1 (ENSOKIG00005013098) ENSOKIG00005013062 ENSOKIG00005013049 ENSOKIG00005013030 APBA3 (ENSOKIG00005013001) ARID3A (ENSOKIG00005012987) ENSOKIG00005012979 ENSOKIG00005011920 ndufs7 (ENSOKIG00005011743) gamt (ENSOKIG00005011724) dazap1 (ENSOKIG00005011529) kank3 (ENSOKIG00005011481) #22 NDUFA7 (ENSOKIG00005011458) ENSOKIG00005011446 B3GNT3 (ENSOKIG00005011441) ENSOKIG00005011435 CCDC124 (ENSOKIG00005011427) KCNN1 (ENSOKIG00005011142) ATP13A3 (ENSOKIG00005005603) tmem44 (ENSOKIG00005005329) lsg1 (ENSOKIG00005004557) fam43a (ENSOKIG00005004447) XXYLT1 (ENSOKIG00005004426) SRSF11 (ENSOKIG00005004377) ANKRD13C (ENSOKIG00005004197) CTH (ENSOKIG00005004013) MYO9B (ENSOKIG00005003855) Chinook salmon MODERN SPECIES 29 smim7 (ENSOTSG00005026154) MED26 (ENSOTSG00005026155) slc35e1 (ENSOTSG00005026156) ENSOTSG00005026157 ENSOTSG00005026160 ENSOTSG00005026164 APBA3 (ENSOTSG00005026168) ENSOTSG00005026172 ARID3A (ENSOTSG00005026175) ENSOTSG00005026178 ENSOTSG00005026179 ndufs7 (ENSOTSG00005026180) gamt (ENSOTSG00005026181) dazap1 (ENSOTSG00005026182) dpp9 (ENSOTSG00005027181) kank3 (ENSOTSG00005027183) #22 ENSOTSG00005027188 ENSOTSG00005027192 B3GNT3 (ENSOTSG00005027197) ccdc124 (ENSOTSG00005027198) KCNN1 (ENSOTSG00005027200) ATP13A3 (ENSOTSG00005027247) tmem44 (ENSOTSG00005029702) lsg1 (ENSOTSG00005029703) fam43a (ENSOTSG00005030683) ENSOTSG00005030684 XXYLT1 (ENSOTSG00005030686) ENSOTSG00005030687 srsf11 (ENSOTSG00005030690) ankrd13c (ENSOTSG00005030698) ENSOTSG00005030709 Rainbow trout MODERN SPECIES 26 ENSOMYG00000047908 MED26 (ENSOMYG00000001098) SLC35E1 (ENSOMYG00000001110) ENSOMYG00000077491 ENSOMYG00000001143 ENSOMYG00000048941 ENSOMYG00000001230 ENSOMYG00000001284 ENSOMYG00000001307 ENSOMYG00000001343 ENSOMYG00000001841 ndufs7 (ENSOMYG00000002058) GAMT (ENSOMYG00000001382) dazap1 (ENSOMYG00000002250) ENSOMYG00000057677 ENSOMYG00000002383 #22 ENSOMYG00000002406 ENSOMYG00000002555 ENSOMYG00000002583 ENSOMYG00000002604 ENSOMYG00000002665 ATP13A3 (ENSOMYG00000002940) tmem44 (ENSOMYG00000003042) lsg1 (ENSOMYG00000003418) fam43a (ENSOMYG00000004071) ENSOMYG00000049370 SRSF11 (ENSOMYG00000004172) ENSOMYG00000004252 ENSOMYG00000029532 ENSOMYG00000072786 CTH (ENSOMYG00000004655) Huchen MODERN SPECIES 58 ENSHHUG00000028722 ENSHHUG00000028711 ENSHHUG00000028705 APBA3 (ENSHHUG00000028698) ENSHHUG00000028695 ARID3A (ENSHHUG00000028685) ENSHHUG00000028675 ENSHHUG00000028665 ndufs7 (ENSHHUG00000028660) gamt (ENSHHUG00000028618) dazap1 (ENSHHUG00000028423) ENSHHUG00000028410 dpp9 (ENSHHUG00000028385) kank3 (ENSHHUG00000028370) #22 ndufa7 (ENSHHUG00000028359) ENSHHUG00000028348 B3GNT3 (ENSHHUG00000028344) ccdc124 (ENSHHUG00000028324) KCNN1 (ENSHHUG00000028319) ENSHHUG00000028312 ENSHHUG00000028309 ENSHHUG00000028305 ENSHHUG00000028297 ENSHHUG00000028294 lsg1 (ENSHHUG00000028281) fam43a (ENSHHUG00000028276) XXYLT1 (ENSHHUG00000028272) srsf11 (ENSHHUG00000028249) ankrd13c (ENSHHUG00000028190) Salmoninae ANCESTRAL SPECIES 392 ENSGT01050000244902.a.a.a.b.b ENSGT00530000063460.B.a ENSGT00390000000427 ENSGT00940000160384.e ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899.n ENSGT01040000240503.A.a.b.a ENSGT00390000002390.a ENSGT00940000161989.a ENSGT00390000006565.b.c ENSGT00390000018061.r ENSGT00940000156757.e ENSGT00940000158174.a.a ENSGT00940000159478.f ENSGT00940000154886.a.a.d #22 Salmoninae_a ANCESTRAL SPECIES 1 ENSGT01050000244902.a.a.a.b.b ENSGT00530000063460.B.a ENSGT00390000000427 ENSGT00940000160384.e ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899.n ENSGT01040000240503.A.a.b.a ENSGT00390000002390.a ENSGT00940000161989.a ENSGT00390000006565.b.c ENSGT00390000018061.r ENSGT00940000156757.e ENSGT00940000158174.a.a ENSGT00940000159478.f ENSGT00940000154886.a.a.d #22 ENSGT00390000006553 ENSGT00940000165170.c.b ENSGT00940000164521.e ENSGT00940000159134.m ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482.h ENSGT00950000182904.a.b.b.b.b ENSGT00940000155941.A.m.b ENSGT00940000156442.f ENSGT00940000161593.c ENSGT00940000158154.c ENSGT00730000110872.b.cb.c ENSGT00950000182928.B.d.b.r ENSGT00390000000312.m.a Salmo ANCESTRAL SPECIES 9 ENSGT01050000244902.a.a.a.b.b ENSGT00530000063460.B.a ENSGT00390000000427 ENSGT00940000160384.e ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899.n ENSGT01040000240503.A.a.b.a ENSGT00390000002390.a ENSGT00940000161989.a ENSGT00390000006565.b.c ENSGT00390000018061.r ENSGT00940000156757.e ENSGT00940000158174.a.a ENSGT00940000159478.f ENSGT00940000154886.a.a.d #22 ENSGT00390000006553 ENSGT00940000165170.c.b ENSGT00940000164521.e ENSGT00940000159134.m ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482.h ENSGT00950000182904.a.b.b.b.b ENSGT00940000155941.A.m.b ENSGT00940000156442.f ENSGT00940000161593.c ENSGT00940000158154.c ENSGT00730000110872.b.cb.c ENSGT00950000182928.B.d.b.r ENSGT00390000000312.m.a River trout MODERN SPECIES 8 ENSSTUG00000008352 pex11g (ENSSTUG00000008363) APBA3 (ENSSTUG00000008377) ABCA7 (ENSSTUG00000008429) r3hdm4 (ENSSTUG00000008975) ARID3A (ENSSTUG00000009011) ENSSTUG00000009028 ENSSTUG00000009046 ENSSTUG00000009063 ndufs7 (ENSSTUG00000009288) gamt (ENSSTUG00000009303) ENSSTUG00000009319 dazap1 (ENSSTUG00000009335) dpp9 (ENSSTUG00000009733) ENSSTUG00000012317 kank3 (ENSSTUG00000012343) #22 ndufa7 (ENSSTUG00000012357) ENSSTUG00000012368 ENSSTUG00000012420 B3GNT3 (ENSSTUG00000012424) ENSSTUG00000012516 slc5a5 (ENSSTUG00000014293) ccdc124 (ENSSTUG00000014454) KCNN1 (ENSSTUG00000014459) ATP13A3 (ENSSTUG00000014493) lsg1 (ENSSTUG00000014846) fam43a (ENSSTUG00000014937) XXYLT1 (ENSSTUG00000014952) srsf11 (ENSSTUG00000014960) ankrd13c (ENSSTUG00000015024) CTH (ENSSTUG00000015248) Atlantic salmon MODERN SPECIES 7 SLC35E1 (ENSSSAG00000103910) ENSSSAG00000096097 ENSSSAG00000081821 ENSSSAG00000064889 apba1 (ENSSSAG00000064282) ENSSSAG00000063955 r3hdm4 (ENSSSAG00000063934) ENSSSAG00000105393 ENSSSAG00000063933 ENSSSAG00000063919 ENSSSAG00000057764 ndufs7 (ENSSSAG00000057710) gamt (ENSSSAG00000119308) dazap1 (ENSSSAG00000056769) ENSSSAG00000044494 ENSSSAG00000044361 #22 ENSSSAG00000044349 ENSSSAG00000065170 ENSSSAG00000087377 b3gnt3 (ENSSSAG00000119262) ENSSSAG00000043023 SLC5A5 (ENSSSAG00000042719) cc124 (ENSSSAG00000042702) KCNN1 (ENSSSAG00000042338) ATP13A3 (ENSSSAG00000041338) lsg1 (ENSSSAG00000107240) fam43a (ENSSSAG00000039267) XXYLT1 (ENSSSAG00000121916) SRSF11 (ENSSSAG00000039144) ENSSSAG00000037652 ENSSSAG00000081857 Oncorhynchus ANCESTRAL SPECIES 2 ENSGT01050000244902.a.a.a.b.b ENSGT00530000063460.B.a ENSGT00390000000427 ENSGT00940000160384.e ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899.n ENSGT01040000240503.A.a.b.a ENSGT00390000002390.a ENSGT00940000161989.a ENSGT00390000006565.b.c ENSGT00390000018061.r ENSGT00940000156757.e ENSGT00940000158174.a.a ENSGT00940000159478.f ENSGT00940000154886.a.a.d #22 ENSGT00940000175596.a ENSGT00940000164521.e ENSGT00940000159134.m ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482.h ENSGT00950000182904.a.b.b.b.b ENSGT00940000155941.A.m.b ENSGT00940000156442.f ENSGT00940000161593.c ENSGT00940000158154.c ENSGT00730000110872.b.cb.c ENSGT00950000182928.B.d.b.r ENSGT00390000000312.m.a ENSGT00940000164178.g Oncorhynchus_a ANCESTRAL SPECIES 1 ENSGT00390000000259.k.b.b ENSGT00940000159007.k ENSGT01050000244902.a.a.a.b.b ENSGT00530000063460.B.a ENSGT00940000160384.e ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899.n ENSGT01040000240503.A.a.b.a ENSGT00390000002390.a ENSGT00940000161989.a ENSGT00390000006565.b.c ENSGT00390000018061.r ENSGT00940000156757.e ENSGT00940000158174.a.a ENSGT00940000154886.a.a.d #22 ENSGT00940000175596.a ENSGT00940000164521.e ENSGT00940000159134.m ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482.h ENSGT00950000182904.a.b.b.b.b ENSGT00940000155941.A.m.b ENSGT00940000156442.f ENSGT00940000161593.c ENSGT00940000158154.c ENSGT00730000110872.b.cb.c ENSGT00950000182928.B.d.b.r ENSGT00390000000312.m.a ENSGT00940000164178.g Coho salmon MODERN SPECIES 24 MED26 (ENSOKIG00005034591) slc35e1 (ENSOKIG00005034600) ENSOKIG00005034618 ENSOKIG00005034729 APBA3 (ENSOKIG00005034742) ABCA7 (ENSOKIG00005034976) r3hdm4 (ENSOKIG00005035617) ARID3A (ENSOKIG00005035651) ENSOKIG00005035669 ENSOKIG00005035686 PCSK4 (ENSOKIG00005035702) ndufs7 (ENSOKIG00005035848) gamt (ENSOKIG00005035914) dazap1 (ENSOKIG00005035964) dpp9 (ENSOKIG00005036583) ENSOKIG00005038146 #22 ENSOKIG00005038164 ENSOKIG00005038180 ENSOKIG00005038200 B3GNT3 (ENSOKIG00005038208) ENSOKIG00005038214 ENSOKIG00005038250 slc5a5 (ENSOKIG00005038490) ccdc124 (ENSOKIG00005038681) KCNN1 (ENSOKIG00005000127) ATP13A3 (ENSOKIG00005000275) ENSOKIG00005000407 fam43a (ENSOKIG00005000413) XXYLT1 (ENSOKIG00005000419) srsf11 (ENSOKIG00005000426) ankrd13c (ENSOKIG00005000464) Chinook salmon MODERN SPECIES 30 smim7 (ENSOTSG00005034300) MED26 (ENSOTSG00005034301) slc35e1 (ENSOTSG00005034302) ENSOTSG00005034303 APBA3 (ENSOTSG00005034330) ABCA7 (ENSOTSG00005034483) r3hdm4 (ENSOTSG00005035034) ENSOTSG00005035037 ENSOTSG00005035040 ENSOTSG00005035042 PCSK4 (ENSOTSG00005035043) ndufs7 (ENSOTSG00005035047) gamt (ENSOTSG00005035048) dazap1 (ENSOTSG00005035053) dpp9 (ENSOTSG00005035325) kank3 (ENSOTSG00005035991) #22 ENSOTSG00005035992 ENSOTSG00005035994 B3GNT3 (ENSOTSG00005035995) ENSOTSG00005035999 slc5a5 (ENSOTSG00005036771) ccdc124 (ENSOTSG00005036773) KCNN1 (ENSOTSG00005036774) ENSOTSG00005036775 ENSOTSG00005036777 ATP13A3 (ENSOTSG00005036782) fam43a (ENSOTSG00005027535) zbtb33 (ENSOTSG00005027537) XXYLT1 (ENSOTSG00005027539) srsf11 (ENSOTSG00005027541) ankrd13c (ENSOTSG00005027558) Rainbow trout MODERN SPECIES ENSOMYG00000004592 ENSOMYG00000004605 ENSOMYG00000004750 ENSOMYG00000005489 r3hdm4 (ENSOMYG00000005831) ENSOMYG00000065844 ENSOMYG00000005884 ENSOMYG00000005941 ENSOMYG00000005988 ENSOMYG00000006926 ndufs7 (ENSOMYG00000007674) gamt (ENSOMYG00000007707) dazap1 (ENSOMYG00000008058) ENSOMYG00000008704 ENSOMYG00000009056 ENSOMYG00000009081 #22 ENSOMYG00000009094 ENSOMYG00000010617 ENSOMYG00000009111 B3GNT3 (ENSOMYG00000009131) SLC5A5 (ENSOMYG00000017611) CCDC124 (ENSOMYG00000017818) KCNN1 (ENSOMYG00000017847) ATP13A3 (ENSOMYG00000018019) ENSOMYG00000054294 lsg1 (ENSOMYG00000020215) fam43a (ENSOMYG00000020410) ENSOMYG00000073191 XXYLT1 (ENSOMYG00000020416) SRSF11 (ENSOMYG00000020427) ENSOMYG00000020472 Huchen MODERN SPECIES 444 ENSHHUG00000038419 ENSHHUG00000038424 pex11g (ENSHHUG00000038432) APBA3 (ENSHHUG00000038438) ABCA7 (ENSHHUG00000038464) r3hdm4 (ENSHHUG00000038677) ARID3A (ENSHHUG00000038693) ENSHHUG00000038699 ENSHHUG00000038715 ENSHHUG00000038719 ndufs7 (ENSHHUG00000038761) gamt (ENSHHUG00000038777) dazap1 (ENSHHUG00000038805) dpp9 (ENSHHUG00000038845) ENSHHUG00000038878 kank3 (ENSHHUG00000038884) #22 ENSHHUG00000038894 ENSHHUG00000038903 B3GNT3 (ENSHHUG00000038910) Northern pike MODERN SPECIES 7 ENSELUG00000012100 pex11g (ENSELUG00000012059) APBA3 (ENSELUG00000012037) ABCA7 (ENSELUG00000011676) ABCA7 (ENSELUG00000034000) r3hdm4 (ENSELUG00000010468) ARID3A (ENSELUG00000010444) ENSELUG00000010399 ENSELUG00000010365 ENSELUG00000029723 ndufs7 (ENSELUG00000001267) gamt (ENSELUG00000025744) dazap1 (ENSELUG00000010286) ENSELUG00000010227 ENSELUG00000024974 kank3 (ENSELUG00000010197) #22 cyp2v1 (ENSELUG00000010129) ENSELUG00000010085 dmbx1b (ENSELUG00000009957) ENSELUG00000009921 ctbs (ENSELUG00000009902) slc9a7 (ENSELUG00000009857) CHST7 (ENSELUG00000009754) tubgcp5 (ENSELUG00000009725) cyfip1 (ENSELUG00000001279) ENSELUG00000009609 nipa2 (ENSELUG00000009595) nipa1 (ENSELUG00000029920) HERC2 (ENSELUG00000009492) OCA2 (ENSELUG00000009431) GABRG3 (ENSELUG00000009399) Otomorpha DUPLICATION Otomorpha ANCESTRAL SPECIES 33 ENSGT00940000167385 ENSGT00940000166272 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491.a ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762.v ENSGT00940000155567 ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT01050000244898.b.b.e.a ENSGT00940000158529 ENSGT00940000165677 ENSGT00940000156035 ENSGT01080000257489 ENSGT01030000234997 ENSGT01000000214878 Clupeiformes ANCESTRAL SPECIES 77 ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.a ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT01050000244898.b.b.e.a ENSGT00940000158529 ENSGT00940000156035 ENSGT01080000257489 ENSGT01030000234997 ENSGT01000000214878 ENSGT00940000157298 Atlantic herring MODERN SPECIES 23 plk2b (ENSCHAG00000026726) si:dkey-190g11.3 (ENSCHAG00000026738) rab3c (ENSCHAG00000026746) PDE4D (ENSCHAG00000026756) elovl7a (ENSCHAG00000026800) zcchc8 (ENSCHAG00000026801) DAB2 (ENSCHAG00000026804) TMEM8B (ENSCHAG00000026814) ENSCHAG00000026822 ENSCHAG00000026831 tars1 (ENSCHAG00000026904) gas1a (ENSCHAG00000027396) dapk1 (ENSCHAG00000027445) ctsla (ENSCHAG00000027488) fbp2 (ENSCHAG00000000965) ENSCHAG00000001123 #22 dmrt1 (ENSCHAG00000001231) #23 dmrt3a (ENSCHAG00000001256) #24 dmrt2a (ENSCHAG00000001301) smarca2 (ENSCHAG00000001539) adamts3 (ENSCHAG00000003933) NPFFR2 (ENSCHAG00000009148) gc (ENSCHAG00000009172) slc4a4a (ENSCHAG00000009209) mob1ba (ENSCHAG00000010808) GRSF1 (ENSCHAG00000010995) rufy3 (ENSCHAG00000011029) ENSCHAG00000012187 cxcl11.1 (ENSCHAG00000012224) ENSCHAG00000012277 ENSCHAG00000012312 Denticle herring MODERN SPECIES 2 ENSDCDG00000003270 TMEM8B (ENSDCDG00000003254) DAB2 (ENSDCDG00000003235) CLIP1 (ENSDCDG00000003198) ammecr1 (ENSDCDG00000003121) dnaaf11 (ENSDCDG00000003084) dnaaf11 (ENSDCDG00000003033) zcchc8 (ENSDCDG00000002992) rsrc2 (ENSDCDG00000002949) ercc8 (ENSDCDG00000029391) elovl7a (ENSDCDG00000029385) PDE4D (ENSDCDG00000029029) rab3c (ENSDCDG00000028997) si:dkey-190g11.3 (ENSDCDG00000028995) plk2b (ENSDCDG00000028597) ENSDCDG00000028569 #22 pold2 (ENSDCDG00000028553) star (ENSDCDG00000028548) lsm1 (ENSDCDG00000028545) bag4 (ENSDCDG00000028544) DUSP26 (ENSDCDG00000028543) rsph14 (ENSDCDG00000028542) DMTN (ENSDCDG00000028540) mymk (ENSDCDG00000028535) ENSDCDG00000028528 fhip2b (ENSDCDG00000028505) ncor2 (ENSDCDG00000027112) mier3b (ENSDCDG00000027021) kif2a (ENSDCDG00000026300) unc45b (ENSDCDG00000023465) pip5k1bb (ENSDCDG00000023395) Otophysi ANCESTRAL SPECIES 78 ENSGT00940000166263 ENSGT00940000158491.a ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762.v ENSGT00940000155567 ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.a ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT01050000244898.b.b.e.a ENSGT00940000165677 ENSGT00940000156035 ENSGT01080000257489 ENSGT01030000234997 ENSGT00940000161751 ENSGT01000000214878 Characiphysae ANCESTRAL SPECIES 36 ENSGT00940000166272 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491.a ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.a ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT01050000244898.b.b.e.a ENSGT00940000165677 ENSGT00940000156035 ENSGT01080000257489 ENSGT01030000234997 ENSGT00940000161751 ENSGT01000000214878 Characiphysae_b ANCESTRAL SPECIES 9 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491.a ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762.v ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.a ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT01050000244898.b.b.e.a ENSGT00940000165677 ENSGT00940000156035 ENSGT01080000257489 ENSGT01030000234997 ENSGT00940000161751.a ENSGT01000000214878 Characoidei ANCESTRAL SPECIES 35 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491.a ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762.v ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.a ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT01050000244898.b.b.e.a ENSGT00940000165677 ENSGT00940000156035 ENSGT01080000257489 ENSGT00940000161751.b ENSGT01030000234997.c ENSGT00940000161751.a Red-bellied piranha MODERN SPECIES 39 hspb11 (ENSPNAG00000014017) mccc2 (ENSPNAG00000014077) DAB2 (ENSPNAG00000014124) ENSPNAG00000014140 ENSPNAG00000003035 ENSPNAG00000014151 ENSPNAG00000014161 TMEM8B (ENSPNAG00000014213) ENSPNAG00000014238 tars1 (ENSPNAG00000014293) gas1a (ENSPNAG00000014302) dapk1 (ENSPNAG00000014365) ctsla (ENSPNAG00000014392) fbp2 (ENSPNAG00000014425) fbp1a (ENSPNAG00000014457) ENSPNAG00000014507 #22 dmrt1 (ENSPNAG00000014524) #23 dmrt3a (ENSPNAG00000014527) #24 dmrt2a (ENSPNAG00000003158) smarca2 (ENSPNAG00000014635) adamts3 (ENSPNAG00000014731) NPFFR2 (ENSPNAG00000014742) ENSPNAG00000014754 gc (ENSPNAG00000003246) slc4a4a (ENSPNAG00000014878) mob1ba (ENSPNAG00000014908) grsf1 (ENSPNAG00000014912) rufy3 (ENSPNAG00000015037) ENSPNAG00000015051 ENSPNAG00000015057 cxcl11.1 (ENSPNAG00000015068) Mexicana tetra MODERN SPECIES 28 gas1a (ENSAMXG00000025638) dapk1 (ENSAMXG00000012193) ctsla (ENSAMXG00000043917) ctsla (ENSAMXG00000042927) fbp2 (ENSAMXG00000012219) fbp1a (ENSAMXG00000012239) ENSAMXG00000012523 #22 dmrt1 (ENSAMXG00000033247) #23 dmrt3a (ENSAMXG00000033043) #24 dmrt2a (ENSAMXG00000012490) smarca2 (ENSAMXG00000012404) adamts3 (ENSAMXG00000012344) NPFFR2 (ENSAMXG00000012321) gc (ENSAMXG00000012314) slc4a4a (ENSAMXG00000012301) mob1ba (ENSAMXG00000013309) grsf1 (ENSAMXG00000012270) rufy3 (ENSAMXG00000012255) ENSAMXG00000039760 ENSAMXG00000036399 cxcl11.1 (ENSAMXG00000038718) ENSAMXG00000040166 Electric eel MODERN SPECIES 20 TMEM8B (ENSEEEG00000004822) ENSEEEG00000004819 tars1 (ENSEEEG00000003576) gas1a (ENSEEEG00000003531) dapk1 (ENSEEEG00000003337) ctsla (ENSEEEG00000003114) fbp2 (ENSEEEG00000003100) fbp1a (ENSEEEG00000003085) ENSEEEG00000003075 #22 dmrt1 (ENSEEEG00000003068) #23 dmrt3a (ENSEEEG00000003065) #24 dmrt2a (ENSEEEG00000003032) smarca2 (ENSEEEG00000002979) adamts3 (ENSEEEG00000002940) NPFFR2 (ENSEEEG00000002938) gc (ENSEEEG00000002926) slc4a4a (ENSEEEG00000001876) mob1ba (ENSEEEG00000001798) grsf1 (ENSEEEG00000001796) rufy3 (ENSEEEG00000001085) ENSEEEG00000001024 cxcl11.1 (ENSEEEG00000001022) cxcl11.1 (ENSEEEG00000001020) cxcl11.6 (ENSEEEG00000001017) Channel catfish MODERN SPECIES 14 ENSIPUG00000012707 rtkn (ENSIPUG00000012641) smn1 (ENSIPUG00000012580) hspb11 (ENSIPUG00000012526) Mccc2 (ENSIPUG00000012419) ENSIPUG00000012377 dab2 (ENSIPUG00000012221) tmem8b (ENSIPUG00000012178) ggt6 (ENSIPUG00000012153) tars1 (ENSIPUG00000012104) Gas1 (ENSIPUG00000012093) dapk1 (ENSIPUG00000011874) ctsla (ENSIPUG00000011719) fbp2 (ENSIPUG00000011685) fbp1a (ENSIPUG00000011530) kank1 (ENSIPUG00000011334) #22 dmrt1 (ENSIPUG00000011312) #23 dmrt3 (ENSIPUG00000011306) #24 dmrt2a (ENSIPUG00000011295) smarca2 (ENSIPUG00000011060) adamts3 (ENSIPUG00000010920) npffr2 (ENSIPUG00000010900) gc (ENSIPUG00000010871) SLC4A4 (ENSIPUG00000010635) mob1ba (ENSIPUG00000010553) grsf1 (ENSIPUG00000010533) rufy3 (ENSIPUG00000010389) CXCL11.3 (ENSIPUG00000010185) ENSIPUG00000010048 CXCL11.2 (ENSIPUG00000009994) CXCL20.2 (ENSIPUG00000009952) Cyprinoidei ANCESTRAL SPECIES 43 ENSGT00940000158491.a ENSGT00940000159752.j ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762.v ENSGT00940000155567 ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a ENSGT00940000153424.a.b ENSGT00940000153321.b.b ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.a ENSGT00940000154886.a.a.e #22 ENSGT00940000156489 #23 ENSGT00940000160420 #24 ENSGT00940000156282.a.a ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e.a ENSGT00390000000113.B ENSGT00940000156290.a ENSGT00940000165457.b ENSGT00940000156667 ENSGT00940000154170.A ENSGT00940000164571 ENSGT00950000182940.b.b.e ENSGT01050000244840.A.b.b.a ENSGT00950000183076.a.b.a Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES ENSGT00940000164944.e ENSGT00940000166263.g.a ENSGT00940000158491.a.c ENSGT00940000159752.j ENSGT00940000155949.e ENSGT00390000012762.v.a ENSGT00940000155567.x.a ENSGT00940000157861.m.b ENSGT00940000161883 ENSGT00940000154969.b.d ENSGT00390000001195.a.a.e ENSGT00940000153424.a.b.c ENSGT00940000153321.b.b.v.a ENSGT00390000015513.a.a.b.b ENSGT00390000015513.a.b.a.c ENSGT00940000154886.a.a.e.a #22 ENSGT00940000156489.b #23 ENSGT00940000160420.f #24 ENSGT00940000156282.a.a.b ENSGT00940000154821.b.fb ENSGT00940000156085.s ENSGT01070000253744.b.b.e.a.a.a ENSGT00390000000113.B.h ENSGT00940000156290.a.a ENSGT00940000165457.b.a ENSGT00940000156667.k ENSGT00940000164571.a ENSGT00950000182940.b.b.e.b ENSGT01050000244840.A.b.b.a.b ENSGT00950000183076.a.b.a.a ENSGT01050000244840.A.a.b.e.a Cyprininae_a ANCESTRAL SPECIES ENSGT00940000164944.e ENSGT00940000166263.g.a ENSGT00940000158491.a.c ENSGT00940000159752.j ENSGT00940000155949.e ENSGT00390000012762.v.a ENSGT00940000155567.x.a ENSGT00940000157861.m.b ENSGT00940000161883 ENSGT00940000154969.b.d ENSGT00390000001195.a.a.e ENSGT00940000153424.a.b.c ENSGT00940000153321.b.b.v.a ENSGT00390000015513.a.a.b.b ENSGT00390000015513.a.b.a.c ENSGT00940000154886.a.a.e.a #22 ENSGT00940000156489.b #23 ENSGT00940000160420.f #24 ENSGT00940000156282.a.a.b ENSGT00940000154821.b.fb ENSGT00940000156085.s ENSGT01070000253744.b.b.e.a.a.a ENSGT00390000000113.B.h ENSGT00940000156290.a.a ENSGT00940000165457.b.a ENSGT00940000156667.k ENSGT00940000164571.a ENSGT00950000182940.b.b.e.b ENSGT01050000244840.A.b.b.a.b ENSGT00950000183076.a.b.a.a ENSGT01050000244840.A.a.b.e.a Golden-line barbel MODERN SPECIES 627 tars1 (ENSSGRG00000049559) gas1a (ENSSGRG00000049744) dapk1 (ENSSGRG00000049748) ctsla (ENSSGRG00000050025) fbp2 (ENSSGRG00000050030) fbp1a (ENSSGRG00000050063) ENSSGRG00000050080 #22 dmrt1 (ENSSGRG00000050083) #23 dmrt2a (ENSSGRG00000050091) smarca2 (ENSSGRG00000050098) adamts3 (ENSSGRG00000050500) Common carp reference MODERN SPECIES 7 rtkna (ENSCCRG00000012908) nos2a (ENSCCRG00000014953) smn1 (ENSCCRG00000014963) mccc2 (ENSCCRG00000041962) ENSCCRG00000062359 ENSCCRG00000015125 ENSCCRG00000070219 ENSCCRG00000025270 ENSCCRG00000051782 tars1 (ENSCCRG00000024983) gas1a (ENSCCRG00000071957) dapk1 (ENSCCRG00000037031) ctsla (ENSCCRG00000065835) fbp2 (ENSCCRG00000039499) fbp1a (ENSCCRG00000061213) ENSCCRG00000032839 #22 dmrt1 (ENSCCRG00000032706) #23 dmrt3a (ENSCCRG00000032698) #24 dmrt2a (ENSCCRG00000032696) smarca2 (ENSCCRG00000032681) ENSCCRG00000078663 adamts3 (ENSCCRG00000072701) NPFFR2 (ENSCCRG00000075865) gc (ENSCCRG00000028390) slc4a4a (ENSCCRG00000028529) ifngr2 (ENSCCRG00000044672) POLK (ENSCCRG00000065827) ENSCCRG00000044683 sv2ca (ENSCCRG00000017476) F2RL2 (ENSCCRG00000025911) iqgap2 (ENSCCRG00000080066) Goldfish MODERN SPECIES 44 rtkna (ENSCARG00000023102) nos2a (ENSCARG00000023214) mccc2 (ENSCARG00000023848) ENSCARG00000024204 ENSCARG00000024217 DAB2 (ENSCARG00000024223) TMEM8B (ENSCARG00000024233) ENSCARG00000024282 tars1 (ENSCARG00000024520) gas1a (ENSCARG00000030222) ENSCARG00000030229 dapk1 (ENSCARG00000030276) ctsla (ENSCARG00000030758) fbp2 (ENSCARG00000030776) fbp1a (ENSCARG00000030809) ENSCARG00000030842 #22 dmrt1 (ENSCARG00000031029) #23 dmrt3a (ENSCARG00000031347) #24 dmrt2a (ENSCARG00000031374) smarca2 (ENSCARG00000031497) ENSCARG00000032107 adamts3 (ENSCARG00000032241) NPFFR2 (ENSCARG00000036313) ENSCARG00000036330 cox7c (ENSCARG00000036332) RASA1 (ENSCARG00000036380) ccnh (ENSCARG00000036775) tmem161b (ENSCARG00000036839) mef2cb (ENSCARG00000037336) mblac2 (ENSCARG00000037689) lysmd3 (ENSCARG00000037733) Cyprininae ANCESTRAL SPECIES 53 ENSGT00940000164944.f ENSGT00940000166263.g.b ENSGT00940000158491.a.d ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949.f ENSGT00390000012762.v.b ENSGT00940000155567.x.b ENSGT00940000157861.m.a ENSGT00940000154969.b.c ENSGT00390000001195.a.a.f ENSGT00940000153424.a.b.d ENSGT00940000153321.b.b.v.b ENSGT00390000015513.a.a.b.a ENSGT00390000015513.a.b.a.d ENSGT00940000154886.a.a.e.b #22 ENSGT00940000156489.a #23 ENSGT00940000160420.e #24 ENSGT00940000156282.a.a.a ENSGT00940000154821.b.gb ENSGT00940000156085.t ENSGT01070000253744.b.b.e.a.a.b ENSGT00390000000113.B.g ENSGT00940000156290.a.b ENSGT00940000165457.b.b ENSGT00940000156667.l ENSGT00940000154170.A ENSGT00940000164571.b ENSGT00950000182940.b.b.e.a ENSGT00950000183076.a.b.a.b ENSGT01050000244840.A.b.b.a.a Cyprininae_a ANCESTRAL SPECIES 151 ENSGT00940000166263.g.b ENSGT00940000158491.a.d ENSGT00940000153352.A.g ENSGT00940000153352.A.h ENSGT00940000166675 ENSGT00940000155949.f ENSGT00940000171993 ENSGT00940000155567.x.b ENSGT00940000157861.m.a ENSGT00940000154969.b.c ENSGT00390000001195.a.a.f ENSGT00940000153424.a.b.d ENSGT00940000153321.b.b.v.b ENSGT00390000015513.a.a.b.a ENSGT00390000015513.a.b.a.d ENSGT00940000154886.a.a.e.b #22 ENSGT00940000156489.a #23 ENSGT00940000160420.e #24 ENSGT00940000156282.a.a.a ENSGT00940000154821.b.gb ENSGT00940000156085.t ENSGT01070000253744.b.b.e.a.a.b ENSGT00390000000113.B.g ENSGT00940000156290.a.b ENSGT00940000156667.l ENSGT00940000164571.b ENSGT00950000182940.b.b.e.a ENSGT01050000244840.A.b.b.a.a ENSGT00950000183076.a.b.a.b ENSGT01050000244840.A.a.b.e.b ENSGT00950000183049.E.t.b Common carp reference MODERN SPECIES 15 wdr54 (ENSCCRG00000066225) rhobtb4 (ENSCCRG00000027808) ENSCCRG00000012891 rtkna (ENSCCRG00000027786) smn1 (ENSCCRG00000041959) hspb11 (ENSCCRG00000041954) mccc2 (ENSCCRG00000014989) ENSCCRG00000059851 ENSCCRG00000055634 ENSCCRG00000042761 tars1 (ENSCCRG00000033752) dapk1 (ENSCCRG00000015435) ctsla (ENSCCRG00000058422) fbp2 (ENSCCRG00000073989) fbp1a (ENSCCRG00000080555) ENSCCRG00000039510 #22 dmrt1 (ENSCCRG00000039591) #23 dmrt3a (ENSCCRG00000048607) #24 dmrt2a (ENSCCRG00000061986) smarca2 (ENSCCRG00000055138) adamts3 (ENSCCRG00000052924) NPFFR2 (ENSCCRG00000028360) gc (ENSCCRG00000001110) slc4a4a (ENSCCRG00000009148) ENSCCRG00000060599 POLK (ENSCCRG00000041529) ENSCCRG00000041503 sv2ca (ENSCCRG00000041429) F2RL2 (ENSCCRG00000041422) iqgap2 (ENSCCRG00000080285) f2r (ENSCCRG00000019984) Golden-line barbel MODERN SPECIES 610 tars1 (ENSSGRG00000007533) gas1a (ENSSGRG00000007537) dapk1 (ENSSGRG00000007542) ctsla (ENSSGRG00000007603) fbp2 (ENSSGRG00000007997) fbp1a (ENSSGRG00000008083) ENSSGRG00000008259 #22 dmrt1 (ENSSGRG00000008262) #23 dmrt3a (ENSSGRG00000008270) #24 dmrt2a (ENSSGRG00000008275) smarca2 (ENSSGRG00000008436) adamts3 (ENSSGRG00000015665) Goldfish MODERN SPECIES 23 rhobtb4 (ENSCARG00000008033) ENSCARG00000008119 rtkna (ENSCARG00000008184) smn1 (ENSCARG00000009135) hspb11 (ENSCARG00000009149) mccc2 (ENSCARG00000009178) ENSCARG00000009493 DAB2 (ENSCARG00000009548) TMEM8B (ENSCARG00000009588) tars1 (ENSCARG00000009832) gas1a (ENSCARG00000014625) dapk1 (ENSCARG00000014658) ctsla (ENSCARG00000014920) fbp2 (ENSCARG00000014970) fbp1a (ENSCARG00000014995) ENSCARG00000015018 #22 dmrt1 (ENSCARG00000015111) #23 dmrt3a (ENSCARG00000015270) #24 dmrt2a (ENSCARG00000015272) smarca2 (ENSCARG00000015308) adamts3 (ENSCARG00000015706) NPFFR2 (ENSCARG00000018894) ENSCARG00000018903 ENSCARG00000018907 slc4a4a (ENSCARG00000019161) ifngr2 (ENSCARG00000025619) POLK (ENSCARG00000025641) ANKDD1B (ENSCARG00000025684) ENSCARG00000025709 sv2ca (ENSCARG00000025726) iqgap2 (ENSCARG00000026236) Zebrafish MODERN SPECIES 20 smn1 (ENSDARG00000018494) hspb11 (ENSDARG00000067777) mccc2 (ENSDARG00000017571) ENSDARG00000102375 DAB2 (ENSDARG00000053091) zgc:112966 (ENSDARG00000095369) TMEM8B (ENSDARG00000075126) ENSDARG00000094625 ENSDARG00000094268 tars1 (ENSDARG00000013250) gas1a (ENSDARG00000077298) dapk1 (ENSDARG00000060093) ctsla (ENSDARG00000007836) fbp2 (ENSDARG00000012366) fbp1a (ENSDARG00000021366) ENSDARG00000060102 #22 dmrt1 (ENSDARG00000007349) #23 dmrt3a (ENSDARG00000035290) #24 dmrt2a (ENSDARG00000015072) smarca2 (ENSDARG00000008904) adamts3 (ENSDARG00000060127) NPFFR2 (ENSDARG00000033635) gc (ENSDARG00000089310) slc4a4a (ENSDARG00000013730) ifngr2 (ENSDARG00000067795) POLK (ENSDARG00000059963) ANKDD1B (ENSDARG00000025866) ENSDARG00000059982 sv2ca (ENSDARG00000059997) iqgap2 (ENSDARG00000060010) F2RL2 (ENSDARG00000090524) Otomorpha ANCESTRAL SPECIES 31 ENSGT00940000160384 ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160839 ENSGT00940000156787 ENSGT00390000014772.l ENSGT00940000157017.b ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000006565.b ENSGT00390000018061 ENSGT00940000156757 ENSGT00390000000475 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a.f #22 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b ENSGT00940000165052 ENSGT00940000160748.a ENSGT00530000063974.a ENSGT00390000016934 ENSGT00390000006166.b ENSGT00390000016851 ENSGT00940000157019.g.a Clupeiformes ANCESTRAL SPECIES 19 ENSGT00530000063460.B ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000154539.a.b.e ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b ENSGT00390000002390.a ENSGT00390000018061 ENSGT00940000156757 ENSGT00390000000475 ENSGT00940000158174.a ENSGT00940000159478.f ENSGT00940000154886.a.a.f #22 ENSGT00910000144227 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b ENSGT00940000165052 ENSGT00940000160748.a ENSGT00530000063974.a ENSGT00390000016934 ENSGT00390000006166.b ENSGT00390000016851 Denticle herring MODERN SPECIES 10 CC2D2A (ENSDCDG00000020924) fbxl5 (ENSDCDG00000020940) ENSDCDG00000020950 pex11g (ENSDCDG00000020955) APBA3 (ENSDCDG00000020967) ENSDCDG00000021135 r3hdm4 (ENSDCDG00000022206) ARID3A (ENSDCDG00000022211) ENSDCDG00000022215 ENSDCDG00000022222 gamt (ENSDCDG00000022227) dazap1 (ENSDCDG00000022235) rps15 (ENSDCDG00000022245) dpp9 (ENSDCDG00000022322) ANGPTL4 (ENSDCDG00000025947) kank3 (ENSDCDG00000025950) #22 rps28 (ENSDCDG00000025955) ndufa7 (ENSDCDG00000025958) ENSDCDG00000025959 ENSDCDG00000025961 b3gnt3.4 (ENSDCDG00000025963) ENSDCDG00000025999 slc5a5 (ENSDCDG00000026570) ccdc124 (ENSDCDG00000023457) kcnn1b (ENSDCDG00000023460) ENSDCDG00000023606 nr2f6b (ENSDCDG00000023611) ENSDCDG00000023614 babam1 (ENSDCDG00000023620) plvapb (ENSDCDG00000023624) gtpbp3 (ENSDCDG00000023629) Atlantic herring MODERN SPECIES 1 fkbp8 (ENSCHAG00000003120) ssbp4 (ENSCHAG00000003297) tmem59l (ENSCHAG00000003406) crlf1b (ENSCHAG00000003479) rex1bd (ENSCHAG00000004305) ENSCHAG00000004354 SAC3D1 (ENSCHAG00000004400) ENSCHAG00000004419 odf3l2b (ENSCHAG00000004524) cks2 (ENSCHAG00000004636) shc2 (ENSCHAG00000004671) ENSCHAG00000004769 ENSCHAG00000004796 shdb (ENSCHAG00000004804) s1pr3a (ENSCHAG00000004828) kank3 (ENSCHAG00000004844) #22 rps28 (ENSCHAG00000004868) NDUFA7 (ENSCHAG00000004889) ENSCHAG00000004900 ENSCHAG00000004916 b3gnt3.4 (ENSCHAG00000004969) ENSCHAG00000005003 slc5a5 (ENSCHAG00000005530) ccdc124 (ENSCHAG00000006196) KCNN1 (ENSCHAG00000006218) ENSCHAG00000006733 nr2f6b (ENSCHAG00000006747) ENSCHAG00000006780 babam1 (ENSCHAG00000006796) plvapb (ENSCHAG00000006884) gtpbp3 (ENSCHAG00000006895) Otophysi ANCESTRAL SPECIES 279 ENSGT00390000006553 ENSGT00940000154886.a.a.f #22 ENSGT00940000158174.a ENSGT00940000163942.b ENSGT00940000158374.c ENSGT00510000048446 ENSGT00390000012490 ENSGT00940000159291 ENSGT00940000154513.B ENSGT00940000154513.A ENSGT00530000065390 ENSGT00940000165284 ENSGT00390000007643 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00390000012265 ENSGT00940000164692 Characiphysae ANCESTRAL SPECIES 69 ENSGT00940000157064.a.a ENSGT00390000015408 ENSGT00940000172767 ENSGT00940000154721 ENSGT00940000153341 ENSGT01030000234571.a.b ENSGT00940000160408 ENSGT00940000161602.n.b ENSGT00940000161602.n.a ENSGT00940000155229 ENSGT00390000017213.B ENSGT00730000111482 ENSGT00940000156136.db ENSGT00940000156136.eb ENSGT00390000006553 ENSGT00940000154886.a.a.f #22 ENSGT00940000158174.a ENSGT00940000163942.b ENSGT00940000158374.c ENSGT00510000048446 ENSGT00390000012490 ENSGT00940000159291 ENSGT00940000169392 ENSGT00940000171201 ENSGT00530000065390 ENSGT00940000165284 ENSGT00390000007643 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00940000164692 ENSGT00390000001652.f.a Characiphysae_b ANCESTRAL SPECIES 68 ENSGT00940000157064.a.a ENSGT00390000015408 ENSGT00940000172767 ENSGT00940000154721 ENSGT00940000153341 ENSGT01030000234571.a.b ENSGT00940000160408 ENSGT00940000161602.n.b ENSGT00940000161602.n.a ENSGT00940000155229 ENSGT00390000017213.B ENSGT00730000111482 ENSGT00940000156136.db ENSGT00940000156136.eb ENSGT00390000006553 ENSGT00940000154886.a.a.f #22 ENSGT00940000158174.a ENSGT00940000163942.b ENSGT00940000158374.c ENSGT00510000048446 ENSGT00390000012490 ENSGT00940000159291 ENSGT00940000169392 ENSGT00940000171201 ENSGT00530000065390 ENSGT00940000165284 ENSGT00390000007643 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00940000164692 ENSGT00390000001652.f.a Characoidei ANCESTRAL SPECIES 137 ENSGT00940000157064.a.a ENSGT00390000015408 ENSGT00940000172767 ENSGT00940000154721 ENSGT00940000153341 ENSGT01030000234571.a.b ENSGT00940000160408 ENSGT00940000161602.n.b.a ENSGT00940000161602.n.b.b ENSGT00940000155229 ENSGT00390000017213.B ENSGT00730000111482 ENSGT00940000156136.db ENSGT00940000156136.eb ENSGT00390000006553 ENSGT00940000154886.a.a.f #22 ENSGT00940000158174.a ENSGT00940000163942.b ENSGT00940000158374.c ENSGT00510000048446 ENSGT00390000012490 ENSGT00940000159291 ENSGT00940000169392 ENSGT00940000171201 ENSGT00530000065390 ENSGT00940000165284 ENSGT00390000007643 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00940000164692 ENSGT00390000001652.f.a Red-bellied piranha MODERN SPECIES 113 angptl7 (ENSPNAG00000005287) exosc10 (ENSPNAG00000028864) ppih (ENSPNAG00000006568) ENSPNAG00000028833 ybx1 (ENSPNAG00000028799) arhgef16 (ENSPNAG00000004432) espn (ENSPNAG00000006281) hes2.1 (ENSPNAG00000028557) hes2.1 (ENSPNAG00000028472) acot7 (ENSPNAG00000028450) GPR153 (ENSPNAG00000005282) her3 (ENSPNAG00000028430) tas1r2.1 (ENSPNAG00000006970) ENSPNAG00000028160 ndufa7 (ENSPNAG00000027786) kank3 (ENSPNAG00000027782) #22 dpp9 (ENSPNAG00000004254) si:ch211-251b21.1 (ENSPNAG00000027681) plch2a (ENSPNAG00000027654) pex10 (ENSPNAG00000027535) mthfr (ENSPNAG00000006779) CLCN6 (ENSPNAG00000027451) ENSPNAG00000027308 ENSPNAG00000005960 ENSPNAG00000007095 nppal (ENSPNAG00000027283) ENSPNAG00000027276 si:dkeyp-104h9.5 (ENSPNAG00000007093) plod1a (ENSPNAG00000004781) mfn2 (ENSPNAG00000027163) ENSPNAG00000027070 Mexicana tetra MODERN SPECIES 21 ENSAMXG00000014500 ENSAMXG00000032726 ppih (ENSAMXG00000041871) ybx1 (ENSAMXG00000014478) arhgef16 (ENSAMXG00000014452) espn (ENSAMXG00000014440) hes2.1 (ENSAMXG00000014429) hes2.1 (ENSAMXG00000042324) acot7 (ENSAMXG00000037583) GPR153 (ENSAMXG00000014413) her3 (ENSAMXG00000037134) tas1r2.1 (ENSAMXG00000014380) ENSAMXG00000014366 ndufa7 (ENSAMXG00000014353) ENSAMXG00000032102 kank3 (ENSAMXG00000014337) #22 dpp9 (ENSAMXG00000014297) si:ch211-251b21.1 (ENSAMXG00000014272) plch2a (ENSAMXG00000014239) pex10 (ENSAMXG00000032150) mthfr (ENSAMXG00000014200) CLCN6 (ENSAMXG00000014154) ENSAMXG00000036240 ENSAMXG00000031663 nppal (ENSAMXG00000040400) ENSAMXG00000043996 si:dkeyp-104h9.5 (ENSAMXG00000014079) plod1a (ENSAMXG00000014065) mfn2 (ENSAMXG00000014050) ENSAMXG00000014024 TPRG1L (ENSAMXG00000014000) Electric eel MODERN SPECIES 167 ubap2b (ENSEEEG00000004358) ENSEEEG00000004355 ENSEEEG00000004350 zgc:154046 (ENSEEEG00000004188) ddx51 (ENSEEEG00000004101) golm1 (ENSEEEG00000004095) espn (ENSEEEG00000004089) hes2.1 (ENSEEEG00000004088) hes2.2 (ENSEEEG00000004087) acot7 (ENSEEEG00000004085) GPR153 (ENSEEEG00000004080) her3 (ENSEEEG00000004077) tas1r2.1 (ENSEEEG00000004035) ENSEEEG00000003955 ndufa7 (ENSEEEG00000003951) kank3 (ENSEEEG00000003948) #22 dpp9 (ENSEEEG00000003283) si:ch211-251b21.1 (ENSEEEG00000003281) plch2a (ENSEEEG00000003276) pex10 (ENSEEEG00000003275) mthfr (ENSEEEG00000003273) CLCN6 (ENSEEEG00000002452) ENSEEEG00000002411 ENSEEEG00000002409 nppal (ENSEEEG00000002407) si:dkeyp-104h9.5 (ENSEEEG00000002406) plod1a (ENSEEEG00000001523) mfn2 (ENSEEEG00000001265) ENSEEEG00000001252 TPRG1L (ENSEEEG00000001250) wrap73 (ENSEEEG00000001241) Channel catfish MODERN SPECIES 24 mtor (ENSIPUG00000022002) exosc10 (ENSIPUG00000021971) ENSIPUG00000021960 ppih (ENSIPUG00000021904) ybx1 (ENSIPUG00000021584) arhgef16 (ENSIPUG00000021551) espn (ENSIPUG00000021497) hes2.1 (ENSIPUG00000021478) hes2.2 (ENSIPUG00000021473) acot7 (ENSIPUG00000021445) GPR153 (ENSIPUG00000021432) tas1r2.1 (ENSIPUG00000021386) ENSIPUG00000021330 ENSIPUG00000021312 ndufa7 (ENSIPUG00000021303) kank3 (ENSIPUG00000021275) #22 dpp9 (ENSIPUG00000021245) si:ch211-251b21.1 (ENSIPUG00000021221) plch2 (ENSIPUG00000021140) PEX10 (ENSIPUG00000021121) mthfr (ENSIPUG00000021093) clcn6 (ENSIPUG00000020997) ENSIPUG00000020993 nppa (ENSIPUG00000020976) nppal (ENSIPUG00000020972) ENSIPUG00000020963 kiaa2013 (ENSIPUG00000020958) plod1 (ENSIPUG00000020902) ENSIPUG00000020868 ENSIPUG00000020860 ENSIPUG00000020850 Cyprinoidei ANCESTRAL SPECIES 180 ENSGT00390000006553 ENSGT00940000154886.a.a.f #22 ENSGT00940000158174.a ENSGT00940000163942.b ENSGT00940000158374.c ENSGT00510000048446 ENSGT00390000012490 ENSGT00940000159291 ENSGT00940000154513.B ENSGT00940000154513.A ENSGT00530000065390 ENSGT00940000165284 ENSGT00940000164692 ENSGT00390000012265 ENSGT00390000013727.c ENSGT01030000234558.A.a.a.b ENSGT00390000007643 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 435 ENSGT00930000151037 ENSGT00550000074972.l ENSGT00730000111360.a.a ENSGT00940000163342.a.a.b.c.a.a.b.a ENSGT00940000156136.db.b.a ENSGT00940000156136.db.a.a ENSGT00390000017213.B.c.b ENSGT00940000155229.hb ENSGT00940000160408.a.a ENSGT01030000234571.a.b.a ENSGT00940000153341.d ENSGT00940000154721.ac ENSGT00940000172767.b ENSGT00940000154721.`c.a ENSGT00390000006553.a.b ENSGT00940000154886.a.a.f.a #22 ENSGT00940000158174.a.f ENSGT00940000163942.b.a ENSGT00940000158374.c.b ENSGT00510000048446 ENSGT00390000012490.b ENSGT00940000159291.i ENSGT00940000169392 ENSGT00940000171201 ENSGT00530000065390.g Goldfish MODERN SPECIES 2613 ENSCARG00000040849 ESPN (ENSCARG00000040733) arhgef16 (ENSCARG00000040467) ybx1 (ENSCARG00000040316) ENSCARG00000040282 PPIH (ENSCARG00000060931) ndufa7 (ENSCARG00000060865) kank3 (ENSCARG00000060845) #22 dpp9 (ENSCARG00000057131) si:ch211-251b21.1 (ENSCARG00000057004) ENSCARG00000056999 ENSCARG00000056993 plch2a (ENSCARG00000053953) pex10 (ENSCARG00000053820) mthfr (ENSCARG00000052901) CLCN6 (ENSCARG00000052724) ENSCARG00000052713 nppa (ENSCARG00000052704) ENSCARG00000052699 ENSCARG00000052692 nppal (ENSCARG00000052678) Cyprininae_a ANCESTRAL SPECIES 556 ENSGT00390000017213.B.c.b ENSGT00940000155229.hb ENSGT00940000160408.a.a ENSGT01030000234571.a.b.a ENSGT00940000153341.d ENSGT00940000154721.ac ENSGT00940000172767.b ENSGT00940000154721.`c.a ENSGT00940000154886.a.a.f.a #22 ENSGT00940000158174.a.f ENSGT00940000163942.b.a ENSGT00940000158374.c.b Common carp reference MODERN SPECIES 17 si:dkey-75a21.2 (ENSCCRG00000070106) qars1 (ENSCCRG00000020784) ENSCCRG00000020772 ENSCCRG00000055544 tas1r2.1 (ENSCCRG00000065318) tas1r2.2 (ENSCCRG00000055062) her3 (ENSCCRG00000044994) GPR153 (ENSCCRG00000059389) ENSCCRG00000076568 acot7 (ENSCCRG00000000203) ESPN (ENSCCRG00000009643) ybx1 (ENSCCRG00000029978) ENSCCRG00000074460 ENSCCRG00000023730 ENSCCRG00000078467 kank3 (ENSCCRG00000057280) #22 dpp9 (ENSCCRG00000055244) si:ch211-251b21.1 (ENSCCRG00000065480) plch2a (ENSCCRG00000046114) pex10 (ENSCCRG00000038296) mthfr (ENSCCRG00000016566) ENSCCRG00000062764 nppa (ENSCCRG00000056048) ENSCCRG00000035194 nppal (ENSCCRG00000035198) ENSCCRG00000035202 ENSCCRG00000035186 mfn2 (ENSCCRG00000022346) plod1a (ENSCCRG00000019372) si:dkeyp-104h9.5 (ENSCCRG00000066431) ENSCCRG00000002910 Golden-line barbel MODERN SPECIES 326 acot7 (ENSSGRG00000010106) espn (ENSSGRG00000010107) arhgef16 (ENSSGRG00000010109) ybx1 (ENSSGRG00000010170) ppih (ENSSGRG00000010194) ENSSGRG00000010198 ENSSGRG00000010199 kank3 (ENSSGRG00000010202) #22 dpp9 (ENSSGRG00000010238) si:ch211-251b21.1 (ENSSGRG00000012233) plch2a (ENSSGRG00000012237) mthfr (ENSSGRG00000012244) CLCN6 (ENSSGRG00000012289) nppa (ENSSGRG00000012500) ENSSGRG00000012501 nppal (ENSSGRG00000012502) ENSSGRG00000012505 mfn2 (ENSSGRG00000012516) plod1a (ENSSGRG00000012549) ENSSGRG00000012633 wrap73 (ENSSGRG00000012635) tp73 (ENSSGRG00000012753) rer1 (ENSSGRG00000012999) Cyprininae ANCESTRAL SPECIES 276 ENSGT00640000091554 ENSGT00730000111360.a.b ENSGT00940000163342.a.a.b.c.a.a.b.b ENSGT00940000156136.db.a.b ENSGT00730000111482 ENSGT00390000017213.B.c.a ENSGT00940000155229.ib ENSGT00940000161602.n.a ENSGT00940000161602.n.b ENSGT00940000160408.a.b ENSGT01030000234571.a.b.b ENSGT00940000153341.c ENSGT00940000154721.`c.b ENSGT00940000172767.a ENSGT00390000006553.b ENSGT00940000154886.a.a.f.b #22 ENSGT00940000158174.a.e ENSGT00940000163942.b.b ENSGT00940000158374.c.a ENSGT00390000012490.a ENSGT00940000159291.j ENSGT00940000154513.B ENSGT00940000154513.A ENSGT00530000065390.h ENSGT00940000165284 ENSGT00940000164692.g ENSGT00390000013727.c.a ENSGT01030000234558.A.a.a.b.g ENSGT00390000007643 ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.a.b.a ENSGT01030000234583.a.a.c.b.a.a.a.b.b.a.a.a.a.a.a.a.a.b.a.a.a.b.a.a.a.a.b.b.a.a Goldfish MODERN SPECIES 48 ENSCARG00000022965 ENSCARG00000022898 tas1r2.2 (ENSCARG00000022874) her3 (ENSCARG00000022866) ENSCARG00000022863 GPR153 (ENSCARG00000022848) acot7 (ENSCARG00000022825) hes2.2 (ENSCARG00000022814) hes2.1 (ENSCARG00000022808) espn (ENSCARG00000022792) arhgef16 (ENSCARG00000022735) ybx1 (ENSCARG00000022694) ENSCARG00000022687 PPIH (ENSCARG00000022668) ndufa7 (ENSCARG00000022664) kank3 (ENSCARG00000022655) #22 dpp9 (ENSCARG00000021304) si:ch211-251b21.1 (ENSCARG00000021184) plch2a (ENSCARG00000020981) mthfr (ENSCARG00000020868) CLCN6 (ENSCARG00000020735) ENSCARG00000020710 ENSCARG00000066927 nppal (ENSCARG00000066921) ENSCARG00000066915 ENSCARG00000066278 mfn2 (ENSCARG00000065977) plod1a (ENSCARG00000059131) si:dkeyp-104h9.5 (ENSCARG00000058872) ENSCARG00000058863 ENSCARG00000058848 Cyprininae_a ANCESTRAL SPECIES 350 ENSGT00640000091554 ENSGT00730000111360.a.b ENSGT00940000163342.a.a.b.c.a.a.b.b ENSGT00940000156136.db.a.b ENSGT00730000111482.c ENSGT00390000017213.B.c.a ENSGT00940000155229.ib ENSGT00940000161602.n.a ENSGT00940000161602.n.b ENSGT00940000160408.a.b ENSGT01030000234571.a.b.b ENSGT00940000153341.c ENSGT00940000154721.`c.b ENSGT00940000172767.a ENSGT00390000006553.b ENSGT00940000154886.a.a.f.b #22 ENSGT00940000158174.a.e ENSGT00940000163942.b.b ENSGT00940000158374.c.a ENSGT00510000048446 ENSGT00390000012490.b ENSGT00940000159291.i ENSGT00940000171201 ENSGT00530000065390.g ENSGT00940000164692.h ENSGT00390000013727.c.b ENSGT01030000234558.A.a.a.b.h Common carp reference MODERN SPECIES 23 ENSCCRG00000061211 ENSCCRG00000020752 tas1r2.2 (ENSCCRG00000038293) her3 (ENSCCRG00000038290) GPR153 (ENSCCRG00000038288) acot7 (ENSCCRG00000000265) hes2.2 (ENSCCRG00000000261) hes2.1 (ENSCCRG00000070850) hes2.1 (ENSCCRG00000000276) espn (ENSCCRG00000077959) arhgef16 (ENSCCRG00000050316) ybx1 (ENSCCRG00000076621) ENSCCRG00000067326 ENSCCRG00000080328 ndufa7 (ENSCCRG00000039694) kank3 (ENSCCRG00000032310) #22 dpp9 (ENSCCRG00000032339) si:ch211-251b21.1 (ENSCCRG00000033817) plch2a (ENSCCRG00000033835) pex10 (ENSCCRG00000001505) mthfr (ENSCCRG00000016693) CLCN6 (ENSCCRG00000033903) nppa (ENSCCRG00000081727) nppb (ENSCCRG00000033913) nppal (ENSCCRG00000035178) ENSCCRG00000035182 ENSCCRG00000035213 mfn2 (ENSCCRG00000078102) plod1a (ENSCCRG00000009679) si:dkeyp-104h9.5 (ENSCCRG00000021994) ENSCCRG00000040286 Golden-line barbel MODERN SPECIES 207 tas1r2.2 (ENSSGRG00000031573) her3 (ENSSGRG00000031571) acot7 (ENSSGRG00000031565) hes2.2 (ENSSGRG00000031562) hes2.1 (ENSSGRG00000031561) hes2.1 (ENSSGRG00000031560) espn (ENSSGRG00000031559) arhgef16 (ENSSGRG00000031558) ybx1 (ENSSGRG00000031557) ENSSGRG00000031556 PPIH (ENSSGRG00000031555) ndufa7 (ENSSGRG00000031554) kank3 (ENSSGRG00000031553) #22 dpp9 (ENSSGRG00000031103) si:ch211-251b21.1 (ENSSGRG00000031085) plch2a (ENSSGRG00000031065) pex10 (ENSSGRG00000031063) ENSSGRG00000031060 CLCN6 (ENSSGRG00000031004) nppa (ENSSGRG00000031002) nppb (ENSSGRG00000031001) nppal (ENSSGRG00000030998) ENSSGRG00000030993 mfn2 (ENSSGRG00000030784) plod1a (ENSSGRG00000030782) si:dkeyp-104h9.5 (ENSSGRG00000030780) ENSSGRG00000030745 ENSSGRG00000030732 Zebrafish MODERN SPECIES 23 ENSDARG00000068145 ENSDARG00000102529 ENSDARG00000041462 CLCN6 (ENSDARG00000032577) nppa (ENSDARG00000052960) nppb (ENSDARG00000052958) nppal (ENSDARG00000052948) ENSDARG00000104072 ENSDARG00000078324 ENSDARG00000092738 mfn2 (ENSDARG00000079504) plod1a (ENSDARG00000059746) si:dkeyp-104h9.5 (ENSDARG00000073801) ENSDARG00000006109 ndufa7 (ENSDARG00000036684) kank3 (ENSDARG00000076566) #22 ENSDARG00000101823 ENSDARG00000110736 dpp9 (ENSDARG00000052606) si:ch211-251b21.1 (ENSDARG00000007275) plch2a (ENSDARG00000059960) pex10 (ENSDARG00000041511) mthfr (ENSDARG00000053087) ENSDARG00000030634 ENSDARG00000092141 ppih (ENSDARG00000041530) ybx1 (ENSDARG00000004757) arhgef16 (ENSDARG00000077114) espn (ENSDARG00000076414) hes2.1 (ENSDARG00000074897) hes2.2 (ENSDARG00000068168) Osteoglossiformes DUPLICATION Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 122 ENSGT00940000165531.b.b ENSGT00950000182815.a.a.b.g ENSGT00940000157242.a.b ENSGT00940000167385 ENSGT00940000166272 ENSGT00940000164944.n ENSGT00940000166263.a ENSGT00940000163584.a ENSGT00940000158491.a.b ENSGT00940000159777 ENSGT00390000001195.a.b ENSGT00390000001195.a.a.b ENSGT00940000153424.a.b.b ENSGT00940000153321.b.b ENSGT00390000015513.a.b.b.f ENSGT00940000154886.a.a.g.a #22 ENSGT00940000156489 #23 ENSGT00940000160420.d #24 ENSGT00940000156282.a.a.h ENSGT00940000154821.a.a Asian bonytongue MODERN SPECIES 21 UNC5D (ENSSFOG00015020067) aqp3b (ENSSFOG00015020054) ENSSFOG00015030433 wdr54 (ENSSFOG00015020034) rhobtb4 (ENSSFOG00015026928) ENSSFOG00015019950 ENSSFOG00015019932 rtkna (ENSSFOG00015019916) ENSSFOG00015019884 dab2 (ENSSFOG00015028048) c9 (ENSSFOG00015019837) gas1b (ENSSFOG00015024998) dapk1 (ENSSFOG00015019739) si:dkey-26g8.5 (ENSSFOG00015019688) ENSSFOG00015019665 ENSSFOG00015019609 #22 dmrt1 (ENSSFOG00015032337) #23 DMRT3 (ENSSFOG00015019574) #24 DMRT2 (ENSSFOG00015019541) ENSSFOG00015019506 NPFFR2 (ENSSFOG00015019405) SLC4A4 (ENSSFOG00015019317) mob1ba (ENSSFOG00015019281) RUFY3 (ENSSFOG00015019217) ENSSFOG00015019206 cxcl11.6 (ENSSFOG00015019137) ENSSFOG00015019118 ENSSFOG00015019085 cnot6l (ENSSFOG00015019044) anxa3b (ENSSFOG00015018260) paqr3b (ENSSFOG00015018231) P. kingsleyae MODERN SPECIES 163 ENSPKIG00000004033 aqp3b (ENSPKIG00000004013) ENSPKIG00000003992 wdr54 (ENSPKIG00000003958) rhobtb4 (ENSPKIG00000003871) ENSPKIG00000003740 ENSPKIG00000003676 rtkna (ENSPKIG00000003583) ENSPKIG00000003484 dab2 (ENSPKIG00000003408) c9 (ENSPKIG00000003353) gas1a (ENSPKIG00000003338) dapk1 (ENSPKIG00000003300) ctsla (ENSPKIG00000003259) fbp1b (ENSPKIG00000003215) ENSPKIG00000003169 #22 ENSPKIG00000003133 dmrt3a (ENSPKIG00000003109) #24 DMRT2 (ENSPKIG00000003092) ENSPKIG00000003039 Osteoglossiformes ANCESTRAL SPECIES 169 ENSGT00940000181170 ENSGT00940000158491.a.a ENSGT00940000153352.A ENSGT00940000166675 ENSGT00940000155949 ENSGT00390000012762 ENSGT00940000155567 ENSGT01050000244902.a.a.a.b ENSGT00940000157861 ENSGT00940000161883 ENSGT00940000154969.b ENSGT00390000001195.a.a.a ENSGT00940000153424.a.b.a ENSGT00390000015513.a.a.b ENSGT00390000015513.a.b.b.e ENSGT00940000154886.a.a.g.b #22 ENSGT00940000160420.c #24 ENSGT00940000156282.a.a.g ENSGT00940000154821.b ENSGT00940000156085 ENSGT01070000253744.b.b.e ENSGT00390000000113.B ENSGT00940000156290.a ENSGT00940000157321 ENSGT00940000158529 Asian bonytongue MODERN SPECIES 8 rtkna (ENSSFOG00015015698) smn1 (ENSSFOG00015015507) hspb11 (ENSSFOG00015032493) mccc2 (ENSSFOG00015015370) ENSSFOG00015015341 DAB2 (ENSSFOG00015015237) TMEM8B (ENSSFOG00015015208) ENSSFOG00015025706 ENSSFOG00015015181 tars1 (ENSSFOG00015015118) gas1a (ENSSFOG00015027640) dapk1 (ENSSFOG00015015059) ctsla (ENSSFOG00015015031) fbp2 (ENSSFOG00015015025) ENSSFOG00015015007 ENSSFOG00015014968 #22 dmrt3a (ENSSFOG00015014937) #24 dmrt2a (ENSSFOG00015014922) SMARCA2 (ENSSFOG00015014870) adamts3 (ENSSFOG00015014846) NPFFR2 (ENSSFOG00015029921) gc (ENSSFOG00015014799) slc4a4a (ENSSFOG00015032673) dck (ENSSFOG00015014636) ENSSFOG00015030617 rufy3 (ENSSFOG00015014519) NPFFR2 (ENSSFOG00015014828) slc4a4a (ENSSFOG00015014669) ENSSFOG00015030739 ENSSFOG00015014499 mrpl1 (ENSSFOG00015014444) Osteoglossiformes ANCESTRAL SPECIES 2 ENSGT00390000000427 ENSGT00940000160384 ENSGT00940000154539.a.b ENSGT00940000161439 ENSGT00390000015467 ENSGT00940000160899 ENSGT01040000240503.A.a.b.e ENSGT00390000002390.a ENSGT00940000161989 ENSGT00390000006565 ENSGT00390000018061 ENSGT00940000156757 ENSGT00390000000475 ENSGT00940000158174 ENSGT00940000159478 ENSGT00940000154886.a.a.h #22 ENSGT00910000144227 ENSGT00390000006553 ENSGT00940000165170 ENSGT00940000164521.e ENSGT00940000159134 ENSGT00940000166579 ENSGT00940000159489 ENSGT00390000012482 ENSGT00950000182904.a.b.b.b ENSGT00940000165052.e ENSGT00940000160748.a ENSGT00530000063974.a ENSGT00390000016934 ENSGT00390000006166.b ENSGT00390000016851 Asian bonytongue MODERN SPECIES 24 APBA3 (ENSSFOG00015020652) ENSSFOG00015020641 ABCA7 (ENSSFOG00015020596) r3hdm4 (ENSSFOG00015027634) ARID3A (ENSSFOG00015020559) ENSSFOG00015020544 ENSSFOG00015030106 ENSSFOG00015020437 ndufs7 (ENSSFOG00015020386) gamt (ENSSFOG00015030188) dazap1 (ENSSFOG00015020338) rps15 (ENSSFOG00015020320) dpp9 (ENSSFOG00015020240) angptl4 (ENSSFOG00015032461) ENSSFOG00015032359 kank3 (ENSSFOG00015020208) #22 rps28 (ENSSFOG00015020198) ndufa7 (ENSSFOG00015026203) ENSSFOG00015020178 ENSSFOG00015020170 b3gnt3.4 (ENSSFOG00015020162) ENSSFOG00015020130 slc5a5 (ENSSFOG00015020024) ccdc124 (ENSSFOG00015019999) KCNN1 (ENSSFOG00015019952) ENSSFOG00015019935 nr2f6b (ENSSFOG00015030173) ENSSFOG00015019903 babam1 (ENSSFOG00015019868) plvapb (ENSSFOG00015019849) gtpbp3 (ENSSFOG00015019813) P. kingsleyae MODERN SPECIES 4 pex11g (ENSPKIG00000007147) APBA3 (ENSPKIG00000007178) ENSPKIG00000007219 ABCA7 (ENSPKIG00000007281) r3hdm4 (ENSPKIG00000007421) ENSPKIG00000007465 ENSPKIG00000007510 ENSPKIG00000007557 ENSPKIG00000007576 ndufs7 (ENSPKIG00000007604) gamt (ENSPKIG00000007631) dazap1 (ENSPKIG00000007696) rps15 (ENSPKIG00000007804) dpp9 (ENSPKIG00000007874) angptl4 (ENSPKIG00000007986) kank3 (ENSPKIG00000008016) #22 rps28 (ENSPKIG00000008060) ndufa7 (ENSPKIG00000008085) ENSPKIG00000008124 ENSPKIG00000008159 b3gnt3.4 (ENSPKIG00000008170) ENSPKIG00000008198 slc5a5 (ENSPKIG00000008285) ccdc124 (ENSPKIG00000008316) KCNN1 (ENSPKIG00000008421) ENSPKIG00000008549 nr2f6b (ENSPKIG00000008588) ENSPKIG00000008610 babam1 (ENSPKIG00000008634) plvapb (ENSPKIG00000008672) gtpbp3 (ENSPKIG00000008711) Spotted gar DUPLICATION Spotted gar MODERN SPECIES 658 ENSLOCG00000011330 smn1 (ENSLOCG00000011339) hspb11 (ENSLOCG00000011348) mccc2 (ENSLOCG00000011352) ENSLOCG00000011364 dab2 (ENSLOCG00000011371) c9 (ENSLOCG00000011377) TMEM8B (ENSLOCG00000011389) ENSLOCG00000011395 tars1 (ENSLOCG00000011402) gas1a (ENSLOCG00000017545) dapk1 (ENSLOCG00000011423) ctsla (ENSLOCG00000011433) fbp2 (ENSLOCG00000011443) fbp1b (ENSLOCG00000011449) KANK1 (ENSLOCG00000011458) #22 dmrt1 (ENSLOCG00000011472) #23 dmrt3a (ENSLOCG00000011480) #24 dmrt2a (ENSLOCG00000011487) smarca2 (ENSLOCG00000011499) adamts3 (ENSLOCG00000011512) NPFFR2 (ENSLOCG00000011523) ENSLOCG00000011536 slc4a4a (ENSLOCG00000011541) DCK (ENSLOCG00000011567) mob1bb (ENSLOCG00000011573) GRSF1 (ENSLOCG00000011589) rufy3 (ENSLOCG00000011601) ENSLOCG00000011622 nop14 (ENSLOCG00000011611) mfsd10 (ENSLOCG00000011631) Spotted gar MODERN SPECIES 657 gamt (ENSLOCG00000002281) ndufs7 (ENSLOCG00000002302) PCSK4 (ENSLOCG00000002313) ENSLOCG00000002336 ENSLOCG00000002346 ARID3A (ENSLOCG00000002384) ENSLOCG00000002413 r3hdm4 (ENSLOCG00000002423) ENSLOCG00000002459 ABCA7 (ENSLOCG00000002469) ENSLOCG00000002533 APBA3 (ENSLOCG00000002548) pex11g (ENSLOCG00000002580) dpp9 (ENSLOCG00000002604) angptl4 (ENSLOCG00000002629) kank3 (ENSLOCG00000002646) #22 rps28 (ENSLOCG00000002654) ndufa7 (ENSLOCG00000002666) ENSLOCG00000002681 ENSLOCG00000002693 b3gnt3.4 (ENSLOCG00000002705) ENSLOCG00000002776 ENSLOCG00000002715 slc5a5 (ENSLOCG00000002786) ENSLOCG00000017629 ccdc124 (ENSLOCG00000002810) kcnn1b (ENSLOCG00000002827) ENSLOCG00000002847 ENSLOCG00000002860 nr2f6a (ENSLOCG00000002897) ENSLOCG00000002908 Reedfish DUPLICATION Reedfish MODERN SPECIES 15 FBXO4 (ENSECRG00000009994) ENSECRG00000010010 ENSECRG00000010033 znf131 (ENSECRG00000010040) ENSECRG00000010051 hmgcs1 (ENSECRG00000010062) TMEM8B (ENSECRG00000010078) ENSECRG00000010092 ENSECRG00000010100 tars1 (ENSECRG00000010130) gas1a (ENSECRG00000010191) dapk1 (ENSECRG00000010207) si:dkey-26g8.5 (ENSECRG00000010227) fbp2 (ENSECRG00000010235) FBP1 (ENSECRG00000010251) KANK1 (ENSECRG00000010264) #22 dmrt1 (ENSECRG00000010275) #23 ENSECRG00000010288 dmrt3a (ENSECRG00000010299) #24 dmrt2a (ENSECRG00000010306) smarca2 (ENSECRG00000010322) adamts3 (ENSECRG00000011880) ENSECRG00000011896 NPFFR2 (ENSECRG00000011914) gc (ENSECRG00000011938) slc4a4a (ENSECRG00000012016) dck (ENSECRG00000012135) mob1bb (ENSECRG00000012154) GRSF1 (ENSECRG00000012177) rufy3 (ENSECRG00000012250) ENSECRG00000012363 Reedfish DUPLICATION Reedfish MODERN SPECIES 3 ENSECRG00000022642 APC2 (ENSECRG00000022570) dohh (ENSECRG00000022531) fzr1a (ENSECRG00000022503) ENSECRG00000022459 gipc3 (ENSECRG00000022398) tbxa2r (ENSECRG00000022374) ENSECRG00000022365 PTPRS (ENSECRG00000022349) kdm4b (ENSECRG00000022334) uhrf1 (ENSECRG00000022320) ENSECRG00000022312 FEM1A (ENSECRG00000022305) dpp9 (ENSECRG00000022285) angptl4 (ENSECRG00000022272) ENSECRG00000022259 #22 ndufa7 (ENSECRG00000022253) ENSECRG00000022244 ENSECRG00000022237 B3GNT3 (ENSECRG00000022231) ENSECRG00000022226 ENSECRG00000017102 slc5a5 (ENSECRG00000016489) ccdc124 (ENSECRG00000016460) kcnn1b (ENSECRG00000016430) ENSECRG00000016388 ENSECRG00000016366 ENSECRG00000016328 nr2f6a (ENSECRG00000016301) babam1 (ENSECRG00000016278) ENSECRG00000016252 Reedfish MODERN SPECIES 543 kank3 (ENSECRG00000014845) #22