Chordata	DUPLICATION
Chordata	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a #22
Gnathostomata	ANCESTRAL SPECIES	617											ENSGT00940000161833	ENSGT00940000165452.a	ENSGT00940000157556 #17	ENSGT00950000183082.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22
Euteleostomi	ANCESTRAL SPECIES	429									ENSGT00390000007125.a	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23
Sarcopterygii	ANCESTRAL SPECIES	157				ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000161036.B	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36
Tetrapoda	ANCESTRAL SPECIES	39				ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000161036.B	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Amniota	ANCESTRAL SPECIES	10		ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000161036.B	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Mammalia	ANCESTRAL SPECIES	14	ENSGT00900000142007	ENSGT00940000158658	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000161036.B	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT01000000220768	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A
Theria	ANCESTRAL SPECIES	21					ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT01000000220768	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820
Eutheria	ANCESTRAL SPECIES	13	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Primates	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00910000147501 #24	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A
Gorilla	MODERN SPECIES	1	ENSGGOG00000005525 #7	ENSGGOG00000008996 #8	ERLIN1 (ENSGGOG00000010561) #9	CPN1 (ENSGGOG00000014771) #10	DNMBP (ENSGGOG00000016481) #11	ABCC2 (ENSGGOG00000002275) #12	CUTC (ENSGGOG00000043674) #13	COX15 (ENSGGOG00000010577) #14	ENTPD7 (ENSGGOG00000014030) #15	SLC25A28 (ENSGGOG00000000150) #16	NKX2-3 (ENSGGOG00000013605) #17	GOT1 (ENSGGOG00000002550) #18	CNNM1 (ENSGGOG00000002546) #19	ENSGGOG00000043172 #20	ENSGGOG00000037859 #21	HPSE2 (ENSGGOG00000013772) #22	HPS1 (ENSGGOG00000002508) #23	ENSGGOG00000043397 #24	PYROXD2 (ENSGGOG00000002504) #25	LOXL4 (ENSGGOG00000004798) #26	R3HCC1L (ENSGGOG00000004792) #27	ENSGGOG00000041605 #28	CRTAC1 (ENSGGOG00000016011) #29	GOLGA7B (ENSGGOG00000016005) #30	SFRP5 (ENSGGOG00000012574) #31	ZFYVE27 (ENSGGOG00000024663) #32	MARVELD1 (ENSGGOG00000027335) #33	AVPI1 (ENSGGOG00000015256) #34	MORN4 (ENSGGOG00000015242) #35	PI4K2A (ENSGGOG00000015247) #36	ANKRD2 (ENSGGOG00000015227) #37
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00910000147501 #24	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A
Human	MODERN SPECIES	1	PKD2L1 (ENSG00000107593)	BLOC1S2 (ENSG00000196072)	CWF19L1 (ENSG00000095485)	CHUK (ENSG00000213341) #8	ERLIN1 (ENSG00000107566) #9	CPN1 (ENSG00000120054) #10	DNMBP (ENSG00000107554) #11	ABCC2 (ENSG00000023839) #12	COX15 (ENSG00000014919) #14	CUTC (ENSG00000119929) #13	ENTPD7 (ENSG00000198018) #15	SLC25A28 (ENSG00000155287) #16	NKX2-3 (ENSG00000119919) #17	GOT1 (ENSG00000120053) #18	CNNM1 (ENSG00000119946) #19	HPSE2 (ENSG00000172987) #22	HPS1 (ENSG00000107521) #23	PYROXD2 (ENSG00000119943) #25	LOXL4 (ENSG00000138131) #26	R3HCC1L (ENSG00000166024) #27	CRTAC1 (ENSG00000095713) #29	GOLGA7B (ENSG00000155265) #30	SFRP5 (ENSG00000120057) #31	ZFYVE27 (ENSG00000155256) #32	MARVELD1 (ENSG00000155254) #33	AVPI1 (ENSG00000119986) #34	PI4K2A (ENSG00000155252) #36	MORN4 (ENSG00000171160) #35	C10orf62 (ENSG00000203942)	ENSG00000249967	HOGA1 (ENSG00000241935)
Pan	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00940000154714.v.e.a #20	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00910000147501 #24	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00730000111173 #35	ENSGT00390000010434.b #36	ENSGT00940000153956.b #37
Bonobo	MODERN SPECIES	1	BLOC1S2 (ENSPPAG00000043419)	CWF19L1 (ENSPPAG00000031948)	CHUK (ENSPPAG00000037851) #8	ERLIN1 (ENSPPAG00000035564) #9	CPN1 (ENSPPAG00000043340) #10	DNMBP (ENSPPAG00000031406) #11	ABCC2 (ENSPPAG00000040849) #12	CUTC (ENSPPAG00000033196) #13	COX15 (ENSPPAG00000002116) #14	ENTPD7 (ENSPPAG00000035846) #15	SLC25A28 (ENSPPAG00000037976) #16	ENSPPAG00000035777 #17	GOT1 (ENSPPAG00000042571) #18	CNNM1 (ENSPPAG00000024282) #19	ENSPPAG00000030090 #20	HPSE2 (ENSPPAG00000030241) #22	HPS1 (ENSPPAG00000033115) #23	ENSPPAG00000037622 #24	PYROXD2 (ENSPPAG00000034734) #25	LOXL4 (ENSPPAG00000030338) #26	R3HCC1L (ENSPPAG00000039950) #27	ENSPPAG00000031192 #28	CRTAC1 (ENSPPAG00000042754) #29	GOLGA7B (ENSPPAG00000040315) #30	SFRP5 (ENSPPAG00000031585) #31	ZFYVE27 (ENSPPAG00000029291) #32	AVPI1 (ENSPPAG00000033222) #34	ENSPPAG00000030161 #35	ENSPPAG00000025810 #36	ANKRD2 (ENSPPAG00000034743) #37	UBTD1 (ENSPPAG00000041666)
Chimpanzee	MODERN SPECIES	1	BLOC1S2 (ENSPTRG00000038697)	CWF19L1 (ENSPTRG00000002843)	CHUK (ENSPTRG00000033948) #8	ERLIN1 (ENSPTRG00000002841) #9	CPN1 (ENSPTRG00000045585) #10	DNMBP (ENSPTRG00000049744) #11	ABCC2 (ENSPTRG00000049872) #12	CUTC (ENSPTRG00000002836) #13	COX15 (ENSPTRG00000002835) #14	ENTPD7 (ENSPTRG00000002832) #15	SLC25A28 (ENSPTRG00000002831) #16	NKX2-3 (ENSPTRG00000002830) #17	GOT1 (ENSPTRG00000002829) #18	CNNM1 (ENSPTRG00000002828) #19	ENSPTRG00000050968 #20	HPSE2 (ENSPTRG00000002826) #22	HPS1 (ENSPTRG00000002825) #23	ENSPTRG00000045214 #24	PYROXD2 (ENSPTRG00000002824) #25	LOXL4 (ENSPTRG00000002823) #26	R3HCC1L (ENSPTRG00000002822) #27	ENSPTRG00000042728 #28	CRTAC1 (ENSPTRG00000002821) #29	GOLGA7B (ENSPTRG00000045507) #30	SFRP5 (ENSPTRG00000045244) #31	ZFYVE27 (ENSPTRG00000002818) #32	MARVELD1 (ENSPTRG00000051550) #33	AVPI1 (ENSPTRG00000002816) #34	MORN4 (ENSPTRG00000045678) #35	PI4K2A (ENSPTRG00000002815) #36	ANKRD2 (ENSPTRG00000002812) #37
Orangutan	MODERN SPECIES	1	PKD2L1 (ENSPPYG00000002565)	BLOC1S2 (ENSPPYG00000033265)	CWF19L1 (ENSPPYG00000002563)	CHUK (ENSPPYG00000002562) #8	ERLIN1 (ENSPPYG00000002560) #9	CPN1 (ENSPPYG00000029420) #10	DNMBP (ENSPPYG00000002559) #11	ABCC2 (ENSPPYG00000002558) #12	CUTC (ENSPPYG00000002557) #13	COX15 (ENSPPYG00000002556) #14	ENTPD7 (ENSPPYG00000002555) #15	SLC25A28 (ENSPPYG00000002554) #16	NKX2-3 (ENSPPYG00000002553) #17	GOT1 (ENSPPYG00000002552) #18	CNNM1 (ENSPPYG00000002551) #19	HPSE2 (ENSPPYG00000002550) #22	HPS1 (ENSPPYG00000002548) #23	PYROXD2 (ENSPPYG00000002547) #25	LOXL4 (ENSPPYG00000002546) #26	R3HCC1L (ENSPPYG00000002545) #27	CRTAC1 (ENSPPYG00000002543) #29	GOLGA7B (ENSPPYG00000002542) #30	SFRP5 (ENSPPYG00000034062) #31	ZFYVE27 (ENSPPYG00000002540) #32	MARVELD1 (ENSPPYG00000038510) #33	AVPI1 (ENSPPYG00000002539) #34	PI4K2A (ENSPPYG00000002538) #36	MORN4 (ENSPPYG00000031901) #35	HOGA1 (ENSPPYG00000002536)	ANKRD2 (ENSPPYG00000002535) #37	UBTD1 (ENSPPYG00000002534)
Gibbon	MODERN SPECIES	18	PKD2L1 (ENSNLEG00000014748)	ENSNLEG00000033207	CWF19L1 (ENSNLEG00000014744)	CHUK (ENSNLEG00000014739) #8	ERLIN1 (ENSNLEG00000014724) #9	CPN1 (ENSNLEG00000014719) #10	DNMBP (ENSNLEG00000014697) #11	ABCC2 (ENSNLEG00000014650) #12	CUTC (ENSNLEG00000033562) #13	COX15 (ENSNLEG00000034626) #14	ENTPD7 (ENSNLEG00000014604) #15	ENSNLEG00000029449 #16	NKX2-3 (ENSNLEG00000027207) #17	GOT1 (ENSNLEG00000014567) #18	CNNM1 (ENSNLEG00000014538) #19	HPSE2 (ENSNLEG00000014531) #22	HPS1 (ENSNLEG00000014448) #23	PYROXD2 (ENSNLEG00000014414) #25	LOXL4 (ENSNLEG00000014379) #26	R3HCC1L (ENSNLEG00000014364) #27	CRTAC1 (ENSNLEG00000014328) #29	ENSNLEG00000035121	GOLGA7B (ENSNLEG00000014326) #30	SFRP5 (ENSNLEG00000014325) #31	ZFYVE27 (ENSNLEG00000014267) #32	AVPI1 (ENSNLEG00000014255) #34	PI4K2A (ENSNLEG00000014236) #36	MORN4 (ENSNLEG00000014248) #35	ANKRD2 (ENSNLEG00000014209) #37	UBTD1 (ENSNLEG00000014204)	MMS19 (ENSNLEG00000013996)
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Rhinopithecus	ANCESTRAL SPECIES	11	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00730000111173 #35	ENSGT00390000010434.b #36	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Black snub-nosed monkey	MODERN SPECIES	78	PKD2L1 (ENSRBIG00000019139)	BLOC1S2 (ENSRBIG00000039928)	CWF19L1 (ENSRBIG00000033458)	CHUK (ENSRBIG00000035878) #8	ERLIN1 (ENSRBIG00000040949) #9	CPN1 (ENSRBIG00000043396) #10	DNMBP (ENSRBIG00000033786) #11	ABCC2 (ENSRBIG00000036097) #12	CUTC (ENSRBIG00000006906) #13	COX15 (ENSRBIG00000038567) #14	ENTPD7 (ENSRBIG00000036449) #15	SLC25A28 (ENSRBIG00000041178) #16	NKX2-3 (ENSRBIG00000038776) #17	GOT1 (ENSRBIG00000020502) #18	CNNM1 (ENSRBIG00000003156) #19	HPSE2 (ENSRBIG00000038333) #22	HPS1 (ENSRBIG00000036336) #23	PYROXD2 (ENSRBIG00000029292) #25	LOXL4 (ENSRBIG00000029695) #26	R3HCC1L (ENSRBIG00000031918) #27	CRTAC1 (ENSRBIG00000032795) #29	GOLGA7B (ENSRBIG00000035613) #30	SFRP5 (ENSRBIG00000033947) #31	ZFYVE27 (ENSRBIG00000031505) #32	AVPI1 (ENSRBIG00000028956) #34	MORN4 (ENSRBIG00000017424) #35	PI4K2A (ENSRBIG00000037559) #36	ANKRD2 (ENSRBIG00000039282) #37	UBTD1 (ENSRBIG00000044391)	MMS19 (ENSRBIG00000036026)	ZDHHC16 (ENSRBIG00000027779)
Golden snub-nosed monkey	MODERN SPECIES	2749																HPSE2 (ENSRROG00000045230) #22	HPS1 (ENSRROG00000036056) #23	PYROXD2 (ENSRROG00000042780) #25	ENSRROG00000013478 #24	LOXL4 (ENSRROG00000023283) #26	R3HCC1L (ENSRROG00000029245) #27	CRTAC1 (ENSRROG00000044890) #29	GOLGA7B (ENSRROG00000029385) #30	SFRP5 (ENSRROG00000030455) #31	ZFYVE27 (ENSRROG00000036164) #32	MARVELD1 (ENSRROG00000032671) #33	AVPI1 (ENSRROG00000042798) #34	PI4K2A (ENSRROG00000040937) #36	MORN4 (ENSRROG00000044980) #35	ANKRD2 (ENSRROG00000036593) #37	UBTD1 (ENSRROG00000041721)
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Vervet Monkey	MODERN SPECIES	28	BLOC1S2 (ENSCSAG00000005639)	ENSCSAG00000018449	CWF19L1 (ENSCSAG00000005656)	CHUK (ENSCSAG00000005664) #8	ERLIN1 (ENSCSAG00000005667) #9	CPN1 (ENSCSAG00000005670) #10	DNMBP (ENSCSAG00000005674) #11	ABCC2 (ENSCSAG00000005698) #12	CUTC (ENSCSAG00000005709) #13	COX15 (ENSCSAG00000005712) #14	ENTPD7 (ENSCSAG00000005714) #15	SLC25A28 (ENSCSAG00000005717) #16	NKX2-3 (ENSCSAG00000005719) #17	GOT1 (ENSCSAG00000005721) #18	ENSCSAG00000005724 #19	ENSCSAG00000005727 #22	HPS1 (ENSCSAG00000005768) #23	PYROXD2 (ENSCSAG00000005790) #25	LOXL4 (ENSCSAG00000005801) #26	R3HCC1L (ENSCSAG00000005808) #27	CRTAC1 (ENSCSAG00000005817) #29	GOLGA7B (ENSCSAG00000005820) #30	SFRP5 (ENSCSAG00000005821) #31	ZFYVE27 (ENSCSAG00000005827) #32	MARVELD1 (ENSCSAG00000018448) #33	AVPI1 (ENSCSAG00000005840) #34	PI4K2A (ENSCSAG00000005842) #36	MORN4 (ENSCSAG00000005847) #35	HOGA1 (ENSCSAG00000005851)	ANKRD2 (ENSCSAG00000005853) #37	UBTD1 (ENSCSAG00000005855)
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000.o.a	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000.o.a	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Pig-tailed macaque	MODERN SPECIES	550	ENSMNEG00000037598	ENSMNEG00000028051	CHUK (ENSMNEG00000030565) #8	ERLIN1 (ENSMNEG00000041977) #9	CPN1 (ENSMNEG00000041677) #10	DNMBP (ENSMNEG00000039644) #11	ABCC2 (ENSMNEG00000038501) #12	CUTC (ENSMNEG00000031615) #13	COX15 (ENSMNEG00000041146) #14	ENTPD7 (ENSMNEG00000041235) #15	SLC25A28 (ENSMNEG00000027423) #16	ENSMNEG00000033853	NKX2-3 (ENSMNEG00000033053) #17	GOT1 (ENSMNEG00000030700) #18	CNNM1 (ENSMNEG00000033068) #19	HPSE2 (ENSMNEG00000028562) #22	HPS1 (ENSMNEG00000045397) #23	PYROXD2 (ENSMNEG00000040531) #25	LOXL4 (ENSMNEG00000030985) #26	R3HCC1L (ENSMNEG00000037890) #27	CRTAC1 (ENSMNEG00000035544) #29	ENSMNEG00000001433 #28	GOLGA7B (ENSMNEG00000033947) #30	SFRP5 (ENSMNEG00000043178) #31	ZFYVE27 (ENSMNEG00000039230) #32	MARVELD1 (ENSMNEG00000009162) #33	AVPI1 (ENSMNEG00000032294) #34	PI4K2A (ENSMNEG00000020019) #36	MORN4 (ENSMNEG00000035432) #35	ANKRD2 (ENSMNEG00000039814) #37	UBTD1 (ENSMNEG00000039022)
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00390000005889	ENSGT00940000156000.o.a	ENSGT00950000182937.A.a #8	ENSGT00980000200803	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00910000147157 #28	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Rhesus	MODERN SPECIES	19	ERLIN1 (ENSMMUG00000018470) #9	BLOC1S2 (ENSMMUG00000061808)	CPN1 (ENSMMUG00000018755) #10	DNMBP (ENSMMUG00000023765) #11	ENSMMUG00000030508	ABCC2 (ENSMMUG00000023764) #12	CUTC (ENSMMUG00000061918) #13	COX15 (ENSMMUG00000023762) #14	ENTPD7 (ENSMMUG00000023761) #15	SLC25A28 (ENSMMUG00000023760) #16	NKX2-3 (ENSMMUG00000018270) #17	ENSMMUG00000056041 ##21	GOT1 (ENSMMUG00000010356) #18	CNNM1 (ENSMMUG00000010357) #19	ENSMMUG00000059304 ##21	HPSE2 (ENSMMUG00000020605) #22	HPS1 (ENSMMUG00000020604) #23	PYROXD2 (ENSMMUG00000020603) #25	LOXL4 (ENSMMUG00000051439) #26	R3HCC1L (ENSMMUG00000010281) #27	ENSMMUG00000052648	GOLGA7B (ENSMMUG00000056243) #30	CRTAC1 (ENSMMUG00000018154) #29	SFRP5 (ENSMMUG00000064002) #31	ZFYVE27 (ENSMMUG00000015503) #32	MARVELD1 (ENSMMUG00000064106) #33	AVPI1 (ENSMMUG00000052153) #34	MORN4 (ENSMMUG00000020034) #35	PI4K2A (ENSMMUG00000020033) #36	ANKRD2 (ENSMMUG00000020032) #37	ENSMMUG00000064764
Crab-eating macaque	MODERN SPECIES	19	ENSMFAG00000031202	CHUK (ENSMFAG00000000426) #8	ENSMFAG00000062447	ERLIN1 (ENSMFAG00000042046) #9	ENSMFAG00000041054	CPN1 (ENSMFAG00000007369) #10	DNMBP (ENSMFAG00000002036) #11	ABCC2 (ENSMFAG00000042907) #12	CUTC (ENSMFAG00000031857) #13	COX15 (ENSMFAG00000044256) #14	ENTPD7 (ENSMFAG00000038377) #15	SLC25A28 (ENSMFAG00000003371) #16	NKX2-3 (ENSMFAG00000044388) #17	GOT1 (ENSMFAG00000030230) #18	ENSMFAG00000046376 #19	HPSE2 (ENSMFAG00000036760) #22	HPS1 (ENSMFAG00000036329) #23	PYROXD2 (ENSMFAG00000034078) #25	LOXL4 (ENSMFAG00000036533) #26	R3HCC1L (ENSMFAG00000036084) #27	ENSMFAG00000060607 #28	CRTAC1 (ENSMFAG00000007568) #29	GOLGA7B (ENSMFAG00000002194) #30	SFRP5 (ENSMFAG00000037089) #31	ZFYVE27 (ENSMFAG00000031815) #32	AVPI1 (ENSMFAG00000043548) #34	PI4K2A (ENSMFAG00000003191) #36	MORN4 (ENSMFAG00000000472) #35	HOGA1 (ENSMFAG00000061572)	ANKRD2 (ENSMFAG00000039302) #37	UBTD1 (ENSMFAG00000044920)
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000.o.a	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Olive baboon	MODERN SPECIES	2	BLOC1S2 (ENSPANG00000041274)	ENSPANG00000021205	CHUK (ENSPANG00000021197) #8	ERLIN1 (ENSPANG00000021228) #9	CPN1 (ENSPANG00000039263) #10	DNMBP (ENSPANG00000021232) #11	ABCC2 (ENSPANG00000021230) #12	CUTC (ENSPANG00000021229) #13	COX15 (ENSPANG00000021260) #14	ENTPD7 (ENSPANG00000021258) #15	SLC25A28 (ENSPANG00000033003) #16	NKX2-3 (ENSPANG00000021255) #17	ENSPANG00000042572	GOT1 (ENSPANG00000021288) #18	CNNM1 (ENSPANG00000021286) #19	HPSE2 (ENSPANG00000021283) #22	HPS1 (ENSPANG00000021281) #23	LOXL4 (ENSPANG00000021302) #26	R3HCC1L (ENSPANG00000021301) #27	CRTAC1 (ENSPANG00000021299) #29	GOLGA7B (ENSPANG00000021297) #30	SFRP5 (ENSPANG00000021296) #31	ZFYVE27 (ENSPANG00000021295) #32	MARVELD1 (ENSPANG00000021294) #33	AVPI1 (ENSPANG00000021293) #34	PI4K2A (ENSPANG00000021292) #36	MORN4 (ENSPANG00000021290) #35	HOGA1 (ENSPANG00000040105)	ANKRD2 (ENSPANG00000021351) #37	UBTD1 (ENSPANG00000021352)	MMS19 (ENSPANG00000021328)
Cercopithecinae_d	ANCESTRAL SPECIES	57	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000.o.a	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298.c #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00730000111173 #35	ENSGT00390000010434.b #36	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Sooty mangabey	MODERN SPECIES	598	PKD2L1 (ENSCATG00000037422)	BLOC1S2 (ENSCATG00000033676)	ENSCATG00000043079	CHUK (ENSCATG00000043885) #8	ERLIN1 (ENSCATG00000034416) #9	CPN1 (ENSCATG00000040918) #10	DNMBP (ENSCATG00000030424) #11	ABCC2 (ENSCATG00000028971) #12	CUTC (ENSCATG00000012209) #13	COX15 (ENSCATG00000043600) #14	ENTPD7 (ENSCATG00000001677) #15	SLC25A28 (ENSCATG00000018619) #16	NKX2-3 (ENSCATG00000037715) #17	GOT1 (ENSCATG00000036970) #18	CNNM1 (ENSCATG00000032684) #19	HPSE2 (ENSCATG00000035827) #22	HPS1 (ENSCATG00000035195) #23	PYROXD2 (ENSCATG00000038164) #25	LOXL4 (ENSCATG00000038999) #26	R3HCC1L (ENSCATG00000034502) #27	ENSCATG00000039731	CRTAC1 (ENSCATG00000033100) #29	GOLGA7B (ENSCATG00000039684) #30	SFRP5 (ENSCATG00000041752) #31	ZFYVE27 (ENSCATG00000039847) #32	MARVELD1 (ENSCATG00000010571) #33	AVPI1 (ENSCATG00000036178) #34	MORN4 (ENSCATG00000037202) #35	PI4K2A (ENSCATG00000036094) #36	ANKRD2 (ENSCATG00000037823) #37	UBTD1 (ENSCATG00000041306)
Drill	DUPLICATION
Drill	MODERN SPECIES	226																HPSE2 (ENSMLEG00000031317) #22	HPS1 (ENSMLEG00000035442) #23	PYROXD2 (ENSMLEG00000027593) #25	LOXL4 (ENSMLEG00000039866) #26	R3HCC1L (ENSMLEG00000044088) #27	CRTAC1 (ENSMLEG00000018903) #29	GOLGA7B (ENSMLEG00000025571) #30	ZFYVE27 (ENSMLEG00000032971) #32	AVPI1 (ENSMLEG00000031158) #34	MORN4 (ENSMLEG00000031488) #35	PI4K2A (ENSMLEG00000032830) #36	ANKRD2 (ENSMLEG00000032656) #37	UBTD1 (ENSMLEG00000039442)	MMS19 (ENSMLEG00000043890)	ZDHHC16 (ENSMLEG00000044387)	EXOSC1 (ENSMLEG00000027643)
Drill	MODERN SPECIES	660	BLOC1S2 (ENSMLEG00000044004)	CWF19L1 (ENSMLEG00000036355)	CHUK (ENSMLEG00000035776) #8	ERLIN1 (ENSMLEG00000029926) #9	CPN1 (ENSMLEG00000038257) #10	DNMBP (ENSMLEG00000043828) #11	ABCC2 (ENSMLEG00000037629) #12	CUTC (ENSMLEG00000043325) #13	COX15 (ENSMLEG00000030859) #14	ENTPD7 (ENSMLEG00000031087) #15	SLC25A28 (ENSMLEG00000034576) #16	NKX2-3 (ENSMLEG00000006314) #17	ENSMLEG00000014598	GOT1 (ENSMLEG00000028411) #18	CNNM1 (ENSMLEG00000038123) #19	ENSMLEG00000029234 #22
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Cebidae	DUPLICATION
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a.nb.a #22
Marmoset	MODERN SPECIES	3	ENSCJAG00000072049	CPN1 (ENSCJAG00000017197) #10	DNMBP (ENSCJAG00000017162) #11	ENSCJAG00000085790	ABCC2 (ENSCJAG00000017142) #12	CUTC (ENSCJAG00000017121) #13	COX15 (ENSCJAG00000017107) #14	ENTPD7 (ENSCJAG00000017079) #15	SLC25A28 (ENSCJAG00000042303) #16	NKX2-3 (ENSCJAG00000017049) #17	ENSCJAG00000086661	GOT1 (ENSCJAG00000017037) #18	CNNM1 (ENSCJAG00000016989) #19	ENSCJAG00000083271	ENSCJAG00000084878	HPSE2 (ENSCJAG00000016974) #22	HPS1 (ENSCJAG00000016915) #23	LOXL4 (ENSCJAG00000016875) #26	R3HCC1L (ENSCJAG00000016839) #27	CRTAC1 (ENSCJAG00000016821) #29	ENSCJAG00000087255 #30	SFRP5 (ENSCJAG00000016808) #31	ZFYVE27 (ENSCJAG00000016783) #32	MARVELD1 (ENSCJAG00000016782) #33	AVPI1 (ENSCJAG00000062664) #34	PI4K2A (ENSCJAG00000016755) #36	MORN4 (ENSCJAG00000016744) #35	HOGA1 (ENSCJAG00000047404)	ANKRD2 (ENSCJAG00000016726) #37	UBTD1 (ENSCJAG00000016722)	MMS19 (ENSCJAG00000016651)
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a.nb.a #22
Capuchin	MODERN SPECIES	71	ENSCCAG00000027065	CWF19L1 (ENSCCAG00000031321)	CHUK (ENSCCAG00000033466) #8	ERLIN1 (ENSCCAG00000036463) #9	CPN1 (ENSCCAG00000031716) #10	DNMBP (ENSCCAG00000036319) #11	ABCC2 (ENSCCAG00000037977) #12	CUTC (ENSCCAG00000034368) #13	COX15 (ENSCCAG00000013919) #14	ENTPD7 (ENSCCAG00000031589) #15	SLC25A28 (ENSCCAG00000022364) #16	NKX2-3 (ENSCCAG00000028510) #17	GOT1 (ENSCCAG00000036234) #18	CNNM1 (ENSCCAG00000037324) #19	ENSCCAG00000020087	ENSCCAG00000023659 #22	CAMK2A (ENSCCAG00000029738)	SLC6A7 (ENSCCAG00000033881)	CDX1 (ENSCCAG00000029914)	PDGFRB (ENSCCAG00000031575)	ENSCCAG00000026641	CSF1R (ENSCCAG00000033803)	HMGXB3 (ENSCCAG00000023989)	ENSCCAG00000030622	SLC26A2 (ENSCCAG00000020161)	PDE6A (ENSCCAG00000037978)	PPARGC1B (ENSCCAG00000026909)	ARHGEF37 (ENSCCAG00000035607) ##11	CSNK1A1 (ENSCCAG00000036479)	IL17B (ENSCCAG00000037576)	PCYOX1L (ENSCCAG00000031959)
Cebidae	ANCESTRAL SPECIES	17	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.ob #22	ENSGT00390000004874.a.a.nb.b #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.ob #22	ENSGT00390000004874.a.a.nb.b #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00730000111173 #35	ENSGT00390000010434.b #36	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Capuchin	MODERN SPECIES	299																HPSE2 (ENSCCAG00000037206) #22	HPS1 (ENSCCAG00000028058) #23	PYROXD2 (ENSCCAG00000022886) #25	LOXL4 (ENSCCAG00000022768) #26	R3HCC1L (ENSCCAG00000021515) #27	CRTAC1 (ENSCCAG00000031919) #29	GOLGA7B (ENSCCAG00000032656) #30	SFRP5 (ENSCCAG00000033972) #31	ZFYVE27 (ENSCCAG00000027456) #32	MARVELD1 (ENSCCAG00000008149) #33	AVPI1 (ENSCCAG00000023548) #34	PI4K2A (ENSCCAG00000027223) #36	MORN4 (ENSCCAG00000037340) #35	ANKRD2 (ENSCCAG00000017610) #37	UBTD1 (ENSCCAG00000033365)	MMS19 (ENSCCAG00000028150)
Cebidae	ANCESTRAL SPECIES	17	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.ob #22	ENSGT00390000004874.a.a.nb.b #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.ob #22	ENSGT00390000004874.a.a.nb.b #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00730000111173 #35	ENSGT00390000010434.b #36	ENSGT00940000153956.b #37	ENSGT00940000158630
Bolivian squirrel monkey	MODERN SPECIES	47	CWF19L1 (ENSSBOG00000027396)	CHUK (ENSSBOG00000024074) #8	ERLIN1 (ENSSBOG00000033053) #9	ENSSBOG00000022350	CPN1 (ENSSBOG00000024485) #10	DNMBP (ENSSBOG00000021393) #11	ABCC2 (ENSSBOG00000034924) #12	CUTC (ENSSBOG00000029115) #13	COX15 (ENSSBOG00000020356) #14	ENTPD7 (ENSSBOG00000029450) #15	ENSSBOG00000029982	SLC25A28 (ENSSBOG00000024135) #16	NKX2-3 (ENSSBOG00000029445) #17	GOT1 (ENSSBOG00000029409) #18	CNNM1 (ENSSBOG00000023360) #19	HPSE2 (ENSSBOG00000035316) #22	ENSSBOG00000025135	HPS1 (ENSSBOG00000001543) #23	PYROXD2 (ENSSBOG00000029428) #25	LOXL4 (ENSSBOG00000029353) #26	R3HCC1L (ENSSBOG00000032433) #27	CRTAC1 (ENSSBOG00000028883) #29	GOLGA7B (ENSSBOG00000028559) #30	SFRP5 (ENSSBOG00000014737) #31	ZFYVE27 (ENSSBOG00000019948) #32	PI4K2A (ENSSBOG00000034802) #36	MORN4 (ENSSBOG00000033451) #35	ANKRD2 (ENSSBOG00000030371) #37	UBTD1 (ENSSBOG00000027361)	ENSSBOG00000032966	MMS19 (ENSSBOG00000034874)
Mas night monkey	MODERN SPECIES	658	CWF19L1 (ENSANAG00000023190)	CHUK (ENSANAG00000038072) #8	ERLIN1 (ENSANAG00000022217) #9	CPN1 (ENSANAG00000025971) #10	DNMBP (ENSANAG00000026014) #11	ABCC2 (ENSANAG00000021520) #12	CUTC (ENSANAG00000027988) #13	COX15 (ENSANAG00000036238) #14	ENTPD7 (ENSANAG00000033075) #15	SLC25A28 (ENSANAG00000032477) #16	NKX2-3 (ENSANAG00000021481) #17	GOT1 (ENSANAG00000000029) #18	CNNM1 (ENSANAG00000021328) #19	ENSANAG00000003679	ENSANAG00000037434	HPSE2 (ENSANAG00000031117) #22	HPS1 (ENSANAG00000033853) #23	PYROXD2 (ENSANAG00000023225) #25	LOXL4 (ENSANAG00000028977) #26	R3HCC1L (ENSANAG00000035504) #27	CRTAC1 (ENSANAG00000035892) #29	GOLGA7B (ENSANAG00000026383) #30	SFRP5 (ENSANAG00000020345) #31	ZFYVE27 (ENSANAG00000038112) #32	MARVELD1 (ENSANAG00000031120) #33	AVPI1 (ENSANAG00000029881) #34	MORN4 (ENSANAG00000023217) #35	PI4K2A (ENSANAG00000019727) #36	ANKRD2 (ENSANAG00000038359) #37	UBTD1 (ENSANAG00000035205)	MMS19 (ENSANAG00000023237)
Tarsier	MODERN SPECIES	7214																HPSE2 (ENSTSYG00000000683) #22	HPS1 (ENSTSYG00000035935) #23	PYROXD2 (ENSTSYG00000006343) #25
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Mouse lemur	MODERN SPECIES	6	CWF19L1 (ENSMICG00000034162)	ENSMICG00000036445 #8	ERLIN1 (ENSMICG00000038590) #9	CYP2C23 (ENSMICG00000045388)	CPN1 (ENSMICG00000006739) #10	DNMBP (ENSMICG00000006721) #11	ABCC2 (ENSMICG00000006689) #12	CUTC (ENSMICG00000042705) #13	COX15 (ENSMICG00000010505) #14	ENTPD7 (ENSMICG00000010496) #15	SLC25A28 (ENSMICG00000010489) #16	NKX2-3 (ENSMICG00000002913) #17	GOT1 (ENSMICG00000010482) #18	CNNM1 (ENSMICG00000010474) #19	ENSMICG00000034050	HPSE2 (ENSMICG00000000214) #22	HPS1 (ENSMICG00000000212) #23	PYROXD2 (ENSMICG00000000210) #25	LOXL4 (ENSMICG00000000209) #26	R3HCC1L (ENSMICG00000000208) #27	CRTAC1 (ENSMICG00000000201) #29	GOLGA7B (ENSMICG00000000199) #30	SFRP5 (ENSMICG00000044070) #31	ZFYVE27 (ENSMICG00000000197) #32	AVPI1 (ENSMICG00000030042) #34	MORN4 (ENSMICG00000047547) #35	C10orf62 (ENSMICG00000007711)	PI4K2A (ENSMICG00000007703) #36	ANKRD2 (ENSMICG00000007695) #37	UBTD1 (ENSMICG00000048128)	MMS19 (ENSMICG00000007678)
Lemuriformes_a	ANCESTRAL SPECIES	21	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Greater bamboo lemur	MODERN SPECIES	968	CHUK (ENSPSMG00000012497) #8	ERLIN1 (ENSPSMG00000012426) #9	ENSPSMG00000011438	CPN1 (ENSPSMG00000010767) #10	ENSPSMG00000010760	DNMBP (ENSPSMG00000010675) #11	ABCC2 (ENSPSMG00000010528) #12	CUTC (ENSPSMG00000010417) #13	COX15 (ENSPSMG00000010383) #14	ENTPD7 (ENSPSMG00000010334) #15	SLC25A28 (ENSPSMG00000010302) #16	NKX2-3 (ENSPSMG00000010298) #17	GOT1 (ENSPSMG00000010275) #18	CNNM1 (ENSPSMG00000010230) #19	ENSPSMG00000010211	HPSE2 (ENSPSMG00000010143) #22	HPS1 (ENSPSMG00000009889) #23	PYROXD2 (ENSPSMG00000009714) #25	LOXL4 (ENSPSMG00000009688) #26	R3HCC1L (ENSPSMG00000009613) #27	CRTAC1 (ENSPSMG00000009508) #29	GOLGA7B (ENSPSMG00000009462) #30	SFRP5 (ENSPSMG00000009435) #31	ZFYVE27 (ENSPSMG00000009295) #32	MARVELD1 (ENSPSMG00000009082) #33	AVPI1 (ENSPSMG00000009076) #34	PI4K2A (ENSPSMG00000009062) #36	MORN4 (ENSPSMG00000009044) #35	HOGA1 (ENSPSMG00000009007)	ANKRD2 (ENSPSMG00000008988) #37	UBTD1 (ENSPSMG00000008967)
Coquerels sifaka	MODERN SPECIES	870	PKD2L1 (ENSPCOG00000001148)	BLOC1S2 (ENSPCOG00000024329)	CWF19L1 (ENSPCOG00000019363)	CHUK (ENSPCOG00000027527) #8	ERLIN1 (ENSPCOG00000018487) #9	CPN1 (ENSPCOG00000020726) #10	DNMBP (ENSPCOG00000025825) #11	ABCC2 (ENSPCOG00000025440) #12	CUTC (ENSPCOG00000002916) #13	COX15 (ENSPCOG00000013672) #14	ENTPD7 (ENSPCOG00000018900) #15	SLC25A28 (ENSPCOG00000014616) #16	NKX2-3 (ENSPCOG00000018687) #17	GOT1 (ENSPCOG00000027796) #18	CNNM1 (ENSPCOG00000028638) #19	HPSE2 (ENSPCOG00000022122) #22	HPS1 (ENSPCOG00000017215) #23	PYROXD2 (ENSPCOG00000018342) #25	LOXL4 (ENSPCOG00000015110) #26	R3HCC1L (ENSPCOG00000025907) #27
Bushbaby	MODERN SPECIES	136	PKD2L1 (ENSOGAG00000013430)	BLOC1S2 (ENSOGAG00000001395)	CWF19L1 (ENSOGAG00000013425)	CHUK (ENSOGAG00000013415) #8	ERLIN1 (ENSOGAG00000026651) #9	CPN1 (ENSOGAG00000008493) #10	DNMBP (ENSOGAG00000001589) #11	ABCC2 (ENSOGAG00000001587) #12	CUTC (ENSOGAG00000001584) #13	COX15 (ENSOGAG00000001582) #14	ENTPD7 (ENSOGAG00000001579) #15	SLC25A28 (ENSOGAG00000005668) #16	NKX2-3 (ENSOGAG00000013370) #17	GOT1 (ENSOGAG00000005666) #18	CNNM1 (ENSOGAG00000027397) #19	HPSE2 (ENSOGAG00000013186) #22	HPS1 (ENSOGAG00000013179) #23	PYROXD2 (ENSOGAG00000013175) #25	LOXL4 (ENSOGAG00000013165) #26	R3HCC1L (ENSOGAG00000013152) #27	CRTAC1 (ENSOGAG00000014055) #29	GOLGA7B (ENSOGAG00000017079) #30	SFRP5 (ENSOGAG00000017076) #31	ZFYVE27 (ENSOGAG00000033211) #32	MARVELD1 (ENSOGAG00000024985) #33	AVPI1 (ENSOGAG00000024961) #34	PI4K2A (ENSOGAG00000009957) #36	MORN4 (ENSOGAG00000008789) #35	HOGA1 (ENSOGAG00000008783)	C10orf62 (ENSOGAG00000008787)	ANKRD2 (ENSOGAG00000008779) #37
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Tree shrew	MODERN SPECIES	3891																HPSE2 (ENSTBEG00000013445) #22	HPS1 (ENSTBEG00000013352) #23	PYROXD2 (ENSTBEG00000013281) #25
Glires	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049709	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Rabbit	MODERN SPECIES	9	ENSOCUG00000001375	PKD2L1 (ENSOCUG00000013146)	BLOC1S2 (ENSOCUG00000013141)	CHUK (ENSOCUG00000013114) #8	ERLIN1 (ENSOCUG00000026715) #9	ENSOCUG00000024354	CPN1 (ENSOCUG00000002261) #10	DNMBP (ENSOCUG00000002254) #11	ABCC2 (ENSOCUG00000008164) #12	CUTC (ENSOCUG00000003148) #13	COX15 (ENSOCUG00000003143) #14	ENTPD7 (ENSOCUG00000011679) #15	SLC25A28 (ENSOCUG00000011690) #16	GOT1 (ENSOCUG00000012333) #18	CNNM1 (ENSOCUG00000012318) #19	HPSE2 (ENSOCUG00000001638) #22	HPS1 (ENSOCUG00000001633) #23	ENSOCUG00000038615	PYROXD2 (ENSOCUG00000004995) #25	LOXL4 (ENSOCUG00000004988) #26	R3HCC1L (ENSOCUG00000004983) #27	CRTAC1 (ENSOCUG00000004978) #29	GOLGA7B (ENSOCUG00000017860) #30	SFRP5 (ENSOCUG00000021137) #31	ZFYVE27 (ENSOCUG00000001352) #32	MARVELD1 (ENSOCUG00000025329) #33	AVPI1 (ENSOCUG00000007821) #34	PI4K2A (ENSOCUG00000007814) #36	MORN4 (ENSOCUG00000007810) #35	HOGA1 (ENSOCUG00000007799)	ANKRD2 (ENSOCUG00000007793) #37
Pika	MODERN SPECIES	1547																HPSE2 (ENSOPRG00000007879) #22	HPS1 (ENSOPRG00000007847) #23	PYROXD2 (ENSOPRG00000007812) #25	LOXL4 (ENSOPRG00000007782) #26
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Kangaroo rat	MODERN SPECIES	355	Cwf19l1 (ENSDORG00000011967)	Chuk (ENSDORG00000011965) #8	Erlin1 (ENSDORG00000026468) #9	ENSDORG00000027804	Cpn1 (ENSDORG00000011960) #10	ENSDORG00000011072 #11	Abcc2 (ENSDORG00000009085) #12	ENSDORG00000028853	Cutc (ENSDORG00000005428) #13	Cox15 (ENSDORG00000005427) #14	Entpd7 (ENSDORG00000005426) #15	Slc25a28 (ENSDORG00000003647) #16	Nkx2-3 (ENSDORG00000003645) #17	Got1 (ENSDORG00000014708) #18	Cnnm1 (ENSDORG00000014706) #19	Hpse2 (ENSDORG00000003807) #22	Hps1 (ENSDORG00000003804) #23	Pyroxd2 (ENSDORG00000003802) #25	Loxl4 (ENSDORG00000015733) #26	ENSDORG00000024055 #27	Crtac1 (ENSDORG00000015477) #29	Golga7b (ENSDORG00000015475) #30	Sfrp5 (ENSDORG00000008180) #31	Zfyve27 (ENSDORG00000008178) #32	Marveld1 (ENSDORG00000002279) #33	Avpi1 (ENSDORG00000028399) #34	Pi4k2a (ENSDORG00000002269) #36	Morn4 (ENSDORG00000016540) #35	Hoga1 (ENSDORG00000016537)	Ankrd2 (ENSDORG00000016536) #37	Ubtd1 (ENSDORG00000029750)
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Lesser Egyptian jerboa	MODERN SPECIES	179	Cwf19l1 (ENSJJAG00000015368)	ENSJJAG00000016093 #8	Erlin1 (ENSJJAG00000016685) #9	Cpn1 (ENSJJAG00000016862) #10	Dnmbp (ENSJJAG00000017540) #11	Abcc2 (ENSJJAG00000020088) #12	ENSJJAG00000010550 #13	Cox15 (ENSJJAG00000011715) #14	ENSJJAG00000012745	Entpd7 (ENSJJAG00000015308) #15	ENSJJAG00000015832	Slc25a28 (ENSJJAG00000016611) #16	Nkx2-3 (ENSJJAG00000017127) #17	Got1 (ENSJJAG00000019106) #18	Cnnm1 (ENSJJAG00000013432) #19	Hpse2 (ENSJJAG00000015190) #22	Hps1 (ENSJJAG00000017073) #23	Pyroxd2 (ENSJJAG00000022532) #25	Loxl4 (ENSJJAG00000013296) #26	ENSJJAG00000020251 #27	Crtac1 (ENSJJAG00000020645) #29	Golga7b (ENSJJAG00000021511) #30	Sfrp5 (ENSJJAG00000022836) #31	Zfyve27 (ENSJJAG00000005638) #32	Marveld1 (ENSJJAG00000012601) #33	Avpi1 (ENSJJAG00000021703) #34	Pi4k2a (ENSJJAG00000021991) #36	Morn4 (ENSJJAG00000013030) #35	Hoga1 (ENSJJAG00000013267)	Ankrd2 (ENSJJAG00000013600) #37	Ubtd1 (ENSJJAG00000013950)
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	771							Dnmbp (ENSNGAG00000011513) #11	Abcc2 (ENSNGAG00000017615) #12	Cutc (ENSNGAG00000024190) #13	Cox15 (ENSNGAG00000023623) #14	Entpd7 (ENSNGAG00000012372) #15	Slc25a28 (ENSNGAG00000023260) #16	Nkx2-3 (ENSNGAG00000021093) #17	Got1 (ENSNGAG00000005165) #18	Cnnm1 (ENSNGAG00000016351) #19	Hpse2 (ENSNGAG00000021159) #22	Hps1 (ENSNGAG00000013601) #23	Pyroxd2 (ENSNGAG00000021947) #25	Loxl4 (ENSNGAG00000014165) #26	ENSNGAG00000017124 #27	Crtac1 (ENSNGAG00000021345) #29	Golga7b (ENSNGAG00000001605) #30	Sfrp5 (ENSNGAG00000022581) #31	Zfyve27 (ENSNGAG00000012854) #32	Marveld1 (ENSNGAG00000006309) #33	Avpi1 (ENSNGAG00000020134) #34	Pi4k2a (ENSNGAG00000022396) #36	Morn4 (ENSNGAG00000018405) #35	Hoga1 (ENSNGAG00000023929)	4933411K16Rik (ENSNGAG00000023063)	Ankrd2 (ENSNGAG00000023355) #37
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Prairie vole	MODERN SPECIES	16	Cwf19l1 (ENSMOCG00000021513)	Chuk (ENSMOCG00000020869) #8	Erlin1 (ENSMOCG00000017984) #9	ENSMOCG00000022931	Cpn1 (ENSMOCG00000020512) #10	Dnmbp (ENSMOCG00000015535) #11	Abcc2 (ENSMOCG00000008644) #12	Cutc (ENSMOCG00000002743) #13	Cox15 (ENSMOCG00000001780) #14	Entpd7 (ENSMOCG00000020235) #15	Slc25a28 (ENSMOCG00000015560) #16	Nkx2-3 (ENSMOCG00000013130) #17	Got1 (ENSMOCG00000022592) #18	Cnnm1 (ENSMOCG00000006772) #19	ENSMOCG00000002567	Hpse2 (ENSMOCG00000002351) #22	Hps1 (ENSMOCG00000002839) #23	Pyroxd2 (ENSMOCG00000003523) #25	Loxl4 (ENSMOCG00000018615) #26	ENSMOCG00000019358 #27	Crtac1 (ENSMOCG00000021947) #29	Golga7b (ENSMOCG00000018394) #30	Sfrp5 (ENSMOCG00000017190) #31	Zfyve27 (ENSMOCG00000014672) #32	Marveld1 (ENSMOCG00000013119) #33	Avpi1 (ENSMOCG00000012593) #34	Pi4k2a (ENSMOCG00000012623) #36	Morn4 (ENSMOCG00000011013) #35	Hoga1 (ENSMOCG00000008769)	Ankrd2 (ENSMOCG00000005548) #37	Ubtd1 (ENSMOCG00000004869)
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000028291	Cwf19l1 (ENSPEMG00000013069)	Chuk (ENSPEMG00000003607) #8	Erlin1 (ENSPEMG00000018538) #9	Cyp2c23 (ENSPEMG00000009996)	Cpn1 (ENSPEMG00000017111) #10	Dnmbp (ENSPEMG00000004169) #11	Abcc2 (ENSPEMG00000011249) #12	Cutc (ENSPEMG00000008839) #13	Cox15 (ENSPEMG00000014240) #14	Entpd7 (ENSPEMG00000010179) #15	Slc25a28 (ENSPEMG00000012732) #16	Nkx2-3 (ENSPEMG00000030266) #17	Got1 (ENSPEMG00000010376) #18	Cnnm1 (ENSPEMG00000007501) #19	Hpse2 (ENSPEMG00000009236) #22	Hps1 (ENSPEMG00000016367) #23	Pyroxd2 (ENSPEMG00000008189) #25	Loxl4 (ENSPEMG00000013107) #26	R3hcc1l (ENSPEMG00000009290) #27	Crtac1 (ENSPEMG00000018527) #29	Golga7b (ENSPEMG00000019018) #30	Sfrp5 (ENSPEMG00000018114) #31	Zfyve27 (ENSPEMG00000000658) #32	Marveld1 (ENSPEMG00000000505) #33	Avpi1 (ENSPEMG00000011234) #34	Pi4k2a (ENSPEMG00000016260) #36	Morn4 (ENSPEMG00000027726) #35	Hoga1 (ENSPEMG00000014860)	Ankrd2 (ENSPEMG00000013562) #37	Ubtd1 (ENSPEMG00000024360)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Chinese hamster chok1gshd	MODERN SPECIES	263	Cwf19l1 (ENSCGRG00001015704)	Chuk (ENSCGRG00001016974) #8	Erlin1 (ENSCGRG00001018321) #9	Cyp2c23 (ENSCGRG00001019601)	Cpn1 (ENSCGRG00001020231) #10	Dnmbp (ENSCGRG00001002955) #11	Abcc2 (ENSCGRG00001011487) #12	Cutc (ENSCGRG00001013542) #13	Cox15 (ENSCGRG00001014605) #14	Entpd7 (ENSCGRG00001015434) #15	Slc25a28 (ENSCGRG00001016289) #16	ENSCGRG00001011590	Nkx2-3 (ENSCGRG00001011819) #17	Got1 (ENSCGRG00001012066) #18	Cnnm1 (ENSCGRG00001012560) #19	Hpse2 (ENSCGRG00001015117) #22	Hps1 (ENSCGRG00001017475) #23	Pyroxd2 (ENSCGRG00001020681) #25	Loxl4 (ENSCGRG00001021180) #26	R3hcc1l (ENSCGRG00001022500) #27	Crtac1 (ENSCGRG00001023131) #29	Golga7b (ENSCGRG00001000198) #30	Sfrp5 (ENSCGRG00001000510) #31	Zfyve27 (ENSCGRG00001001467) #32	Marveld1 (ENSCGRG00001015304) #33	Avpi1 (ENSCGRG00001003238) #34	Pi4k2a (ENSCGRG00001006184) #36	Morn4 (ENSCGRG00001008672) #35	Hoga1 (ENSCGRG00001010186)	4933411K16Rik (ENSCGRG00001010620)	Ankrd2 (ENSCGRG00001011585) #37
Golden Hamster	MODERN SPECIES	617	Scd3 (ENSMAUG00000019555)	Pkd2l1 (ENSMAUG00000017374)	Cwf19l1 (ENSMAUG00000016480)	Chuk (ENSMAUG00000017206) #8	Erlin1 (ENSMAUG00000019313) #9	Cpn1 (ENSMAUG00000020473) #10	Dnmbp (ENSMAUG00000021363) #11	Abcc2 (ENSMAUG00000017544) #12	Cutc (ENSMAUG00000017160) #13	Cox15 (ENSMAUG00000019550) #14	Entpd7 (ENSMAUG00000018067) #15	Slc25a28 (ENSMAUG00000016762) #16	Nkx2-3 (ENSMAUG00000019421) #17	Got1 (ENSMAUG00000017853) #18	Cnnm1 (ENSMAUG00000018739) #19	Hpse2 (ENSMAUG00000020448) #22	Hps1 (ENSMAUG00000019246) #23	Pyroxd2 (ENSMAUG00000017820) #25	Loxl4 (ENSMAUG00000019599) #26	ENSMAUG00000018764 #27	Crtac1 (ENSMAUG00000019399) #29	Golga7b (ENSMAUG00000019120) #30	Sfrp5 (ENSMAUG00000019322) #31	Zfyve27 (ENSMAUG00000020339) #32	Marveld1 (ENSMAUG00000020397) #33	Avpi1 (ENSMAUG00000020844) #34	Pi4k2a (ENSMAUG00000018850) #36	Morn4 (ENSMAUG00000019301) #35	Hoga1 (ENSMAUG00000021216)	4933411K16Rik (ENSMAUG00000017996)	Ankrd2 (ENSMAUG00000018303) #37
Murinae	ANCESTRAL SPECIES		ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Rat	MODERN SPECIES		Cwf19l1 (ENSRNOG00000012763)	Chuk (ENSRNOG00000022485) #8	Erlin1 (ENSRNOG00000012911) #9	Cyp2c23 (ENSRNOG00000013291)	Cpn1 (ENSRNOG00000013439) #10	Dnmbp (ENSRNOG00000050742) #11	Abcc2 (ENSRNOG00000046727) #12	Cutc (ENSRNOG00000017298) #13	Cox15 (ENSRNOG00000017230) #14	Entpd7 (ENSRNOG00000016883) #15	Slc25a28 (ENSRNOG00000016751) #16	Nkx2-3 (ENSRNOG00000016656) #17	Got1 (ENSRNOG00000016356) #18	Cnnm1 (ENSRNOG00000016302) #19	ENSRNOG00000065211	Hpse2 (ENSRNOG00000064037) #22	Hps1 (ENSRNOG00000045838) #23	Pyroxd2 (ENSRNOG00000015807) #25	Loxl4 (ENSRNOG00000015727) #26	R3hcc1l (ENSRNOG00000051256) #27	Crtac1 (ENSRNOG00000015220) #29	Golga7b (ENSRNOG00000015051) #30	AABR07006871.1 (ENSRNOG00000053536)	Sfrp5 (ENSRNOG00000014940) #31	Zfyve27 (ENSRNOG00000014903) #32	Marveld1 (ENSRNOG00000042620)	Avpi1 (ENSRNOG00000014828) #34	Pi4k2a (ENSRNOG00000014675) #36	Morn4 (ENSRNOG00000027156) #35	MGC93861 (ENSRNOG00000069762)	Hoga1 (ENSRNOG00000029501)
Mus	ANCESTRAL SPECIES		ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Shrew mouse	MODERN SPECIES		Bloc1s2 (MGP_PahariEiJ_G0014483)	Cwf19l1 (MGP_PahariEiJ_G0014482)	Chuk (MGP_PahariEiJ_G0014481) #8	Erlin1 (MGP_PahariEiJ_G0014480) #9	Cyp2c23 (MGP_PahariEiJ_G0014479)	Cpn1 (MGP_PahariEiJ_G0014478) #10	Dnmbp (MGP_PahariEiJ_G0014477) #11	Abcc2 (MGP_PahariEiJ_G0014476) #12	Cutc (MGP_PahariEiJ_G0014475) #13	Cox15 (MGP_PahariEiJ_G0014474) #14	Entpd7 (MGP_PahariEiJ_G0014473) #15	Slc25a28 (MGP_PahariEiJ_G0014472) #16	Nkx2-3 (MGP_PahariEiJ_G0014471) #17	Got1 (MGP_PahariEiJ_G0014470) #18	Cnnm1 (MGP_PahariEiJ_G0014469) #19	Hpse2 (MGP_PahariEiJ_G0014468) #22	Hps1 (MGP_PahariEiJ_G0014467) #23	Pyroxd2 (MGP_PahariEiJ_G0014466) #25	Loxl4 (MGP_PahariEiJ_G0014465) #26	R3hcc1l (MGP_PahariEiJ_G0014464) #27	Crtac1 (MGP_PahariEiJ_G0014463) #29	Golga7b (MGP_PahariEiJ_G0014462) #30	Sfrp5 (MGP_PahariEiJ_G0014461) #31	Zfyve27 (MGP_PahariEiJ_G0014460) #32	Marveld1 (MGP_PahariEiJ_G0014459) #33	Avpi1 (MGP_PahariEiJ_G0014458) #34	Pi4k2a (MGP_PahariEiJ_G0014457) #36	Morn4 (MGP_PahariEiJ_G0014456) #35	4933411K16Rik (MGP_PahariEiJ_G0014455)	Hoga1 (MGP_PahariEiJ_G0014454)	Ankrd2 (MGP_PahariEiJ_G0014453) #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Ryukyu mouse	MODERN SPECIES	10	Bloc1s2 (MGP_CAROLIEiJ_G0022993)	Cwf19l1 (MGP_CAROLIEiJ_G0022992)	Chuk (MGP_CAROLIEiJ_G0022991) #8	Erlin1 (MGP_CAROLIEiJ_G0022990) #9	Cyp2c23 (MGP_CAROLIEiJ_G0022989)	Cpn1 (MGP_CAROLIEiJ_G0022988) #10	Dnmbp (MGP_CAROLIEiJ_G0022987) #11	Abcc2 (MGP_CAROLIEiJ_G0022986) #12	Cutc (MGP_CAROLIEiJ_G0022985) #13	Cox15 (MGP_CAROLIEiJ_G0022984) #14	Entpd7 (MGP_CAROLIEiJ_G0022983) #15	Slc25a28 (MGP_CAROLIEiJ_G0022982) #16	Nkx2-3 (MGP_CAROLIEiJ_G0022981) #17	Got1 (MGP_CAROLIEiJ_G0022980) #18	Cnnm1 (MGP_CAROLIEiJ_G0022979) #19	Hpse2 (MGP_CAROLIEiJ_G0022978) #22	Hps1 (MGP_CAROLIEiJ_G0022977) #23	Pyroxd2 (MGP_CAROLIEiJ_G0022976) #25	Loxl4 (MGP_CAROLIEiJ_G0022975) #26	R3hcc1l (MGP_CAROLIEiJ_G0022974) #27	Crtac1 (MGP_CAROLIEiJ_G0022973) #29	Golga7b (MGP_CAROLIEiJ_G0022972) #30	Sfrp5 (MGP_CAROLIEiJ_G0022971) #31	Zfyve27 (MGP_CAROLIEiJ_G0022970) #32	Marveld1 (MGP_CAROLIEiJ_G0022969) #33	Avpi1 (MGP_CAROLIEiJ_G0022968) #34	Pi4k2a (MGP_CAROLIEiJ_G0022967) #36	Morn4 (MGP_CAROLIEiJ_G0022966) #35	4933411K16Rik (MGP_CAROLIEiJ_G0022965)	Hoga1 (MGP_CAROLIEiJ_G0022964)	Ankrd2 (MGP_CAROLIEiJ_G0022963) #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Mouse	MODERN SPECIES	10	Bloc1s2 (ENSMUSG00000057506)	Cwf19l1 (ENSMUSG00000025200)	Chuk (ENSMUSG00000025199) #8	Erlin1 (ENSMUSG00000025198) #9	Cyp2c23 (ENSMUSG00000025197)	Cpn1 (ENSMUSG00000025196) #10	Dnmbp (ENSMUSG00000025195) #11	Abcc2 (ENSMUSG00000025194) #12	Cutc (ENSMUSG00000025193) #13	Cox15 (ENSMUSG00000040018) #14	Entpd7 (ENSMUSG00000025192) #15	Slc25a28 (ENSMUSG00000040414) #16	Nkx2-3 (ENSMUSG00000044220) #17	Got1 (ENSMUSG00000025190) #18	Cnnm1 (ENSMUSG00000025189) #19	Hpse2 (ENSMUSG00000074852) #22	Hps1 (ENSMUSG00000025188) #23	Pyroxd2 (ENSMUSG00000060224) #25	Loxl4 (ENSMUSG00000025185) #26	R3hcc1l (ENSMUSG00000025184) #27	Crtac1 (ENSMUSG00000042401) #29	Golga7b (ENSMUSG00000042532) #30	Sfrp5 (ENSMUSG00000018822) #31	Zfyve27 (ENSMUSG00000018820) #32	Marveld1 (ENSMUSG00000044345) #33	Avpi1 (ENSMUSG00000018821) #34	Pi4k2a (ENSMUSG00000025178) #36	Morn4 (ENSMUSG00000049670) #35	4933411K16Rik (ENSMUSG00000090369)	Hoga1 (ENSMUSG00000025176)	Ankrd2 (ENSMUSG00000025172) #37
Mus_C	ANCESTRAL SPECIES	24	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
spretus	MODERN SPECIES	10	Bloc1s2 (MGP_SPRETEiJ_G0023914)	Cwf19l1 (MGP_SPRETEiJ_G0023913)	Chuk (MGP_SPRETEiJ_G0023912) #8	Erlin1 (MGP_SPRETEiJ_G0023911) #9	Cyp2c23 (MGP_SPRETEiJ_G0023910)	Cpn1 (MGP_SPRETEiJ_G0023909) #10	Dnmbp (MGP_SPRETEiJ_G0023908) #11	Abcc2 (MGP_SPRETEiJ_G0023907) #12	Cutc (MGP_SPRETEiJ_G0023906) #13	Cox15 (MGP_SPRETEiJ_G0023905) #14	Entpd7 (MGP_SPRETEiJ_G0023904) #15	Slc25a28 (MGP_SPRETEiJ_G0023903) #16	Nkx2-3 (MGP_SPRETEiJ_G0023902) #17	Got1 (MGP_SPRETEiJ_G0023901) #18	Cnnm1 (MGP_SPRETEiJ_G0023900) #19	Hpse2 (MGP_SPRETEiJ_G0023899) #22	Hps1 (MGP_SPRETEiJ_G0023898) #23	Pyroxd2 (MGP_SPRETEiJ_G0023897) #25	Loxl4 (MGP_SPRETEiJ_G0023896) #26	R3hcc1l (MGP_SPRETEiJ_G0023895) #27	Crtac1 (MGP_SPRETEiJ_G0023894) #29	Golga7b (MGP_SPRETEiJ_G0023893) #30	Sfrp5 (MGP_SPRETEiJ_G0023892) #31	Zfyve27 (MGP_SPRETEiJ_G0023891) #32	Marveld1 (MGP_SPRETEiJ_G0023890) #33	Avpi1 (MGP_SPRETEiJ_G0023889) #34	Pi4k2a (MGP_SPRETEiJ_G0023888) #36	Morn4 (MGP_SPRETEiJ_G0023887) #35	4933411K16Rik (MGP_SPRETEiJ_G0023886)	Hoga1 (MGP_SPRETEiJ_G0023885)	Ankrd2 (MGP_SPRETEiJ_G0023884) #37
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3102																ENSMSIG00000016731 #22	Hps1 (ENSMSIG00000016547) #23	Pyroxd2 (ENSMSIG00000016509) #25	Loxl4 (ENSMSIG00000016394) #26	R3hcc1l (ENSMSIG00000016349) #27	Crtac1 (ENSMSIG00000016325) #29	ENSMSIG00000016305 #30	Sfrp5 (ENSMSIG00000016290) #31	Zfyve27 (ENSMSIG00000016227) #32	ENSMSIG00000016220	Marveld1 (ENSMSIG00000016215) #33	Avpi1 (ENSMSIG00000016198) #34	Pi4k2a (ENSMSIG00000016167) #36	Morn4 (ENSMSIG00000016140) #35	Hoga1 (ENSMSIG00000016124)	Ankrd2 (ENSMSIG00000016098) #37
Steppe mouse	MODERN SPECIES	3317	Pkd2l1 (ENSMSIG00000013623)	ENSMSIG00000013690	Cwf19l1 (ENSMSIG00000013717)	Chuk (ENSMSIG00000013784) #8	ENSMSIG00000013896	Cpn1 (ENSMSIG00000013970) #10	Dnmbp (ENSMSIG00000013995) #11	Abcc2 (ENSMSIG00000014396) #12	Cutc (ENSMSIG00000014461) #13	Cox15 (ENSMSIG00000014488) #14	Entpd7 (ENSMSIG00000014516) #15	Slc25a28 (ENSMSIG00000014549) #16	Nkx2-3 (ENSMSIG00000014564) #17	ENSMSIG00000014579 #18	Cnnm1 (ENSMSIG00000014602) #19	ENSMSIG00000014652 #22	ENSMSIG00000014659
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Naked mole-rat female	MODERN SPECIES	4	ERLIN1 (ENSHGLG00000047763) #9	CPN1 (ENSHGLG00000012757) #10	ENSHGLG00000031990	ENSHGLG00000037421	ENSHGLG00000040272	DNMBP (ENSHGLG00000010974) #11	ABCC2 (ENSHGLG00000014313) #12	CUTC (ENSHGLG00000019050) #13	COX15 (ENSHGLG00000041126) #14	ENTPD7 (ENSHGLG00000017820) #15	SLC25A28 (ENSHGLG00000034471) #16	ENSHGLG00000020927	NKX2-3 (ENSHGLG00000042373) #17	GOT1 (ENSHGLG00000010094) #18	CNNM1 (ENSHGLG00000009827) #19	ENSHGLG00000014473 #22	ENSHGLG00000009626	ENSHGLG00000045765	ENSHGLG00000012447	ENSHGLG00000013798 #23	ENSHGLG00000009871 #25	ENSHGLG00000020899	ENSHGLG00000042684 #27	ENSHGLG00000010600 #26	ENSHGLG00000035976	ENSHGLG00000014093	ENSHGLG00000038381	LRRTM3 (ENSHGLG00000016164)	ENSHGLG00000043450	ENSHGLG00000046411	ENSHGLG00000001073
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Guinea pig	MODERN SPECIES	1	CWF19L1 (ENSCPOG00000010890)	CHUK (ENSCPOG00000022931) #8	ERLIN1 (ENSCPOG00000026732) #9	ENSCPOG00000026359	CPN1 (ENSCPOG00000000190) #10	DNMBP (ENSCPOG00000005939) #11	ABCC2 (ENSCPOG00000010942) #12	CUTC (ENSCPOG00000010941) #13	COX15 (ENSCPOG00000009783) #14	ENTPD7 (ENSCPOG00000009780) #15	SLC25A28 (ENSCPOG00000036710) #16	NKX2-3 (ENSCPOG00000009772) #17	GOT1 (ENSCPOG00000008633) #18	CNNM1 (ENSCPOG00000008627) #19	ENSCPOG00000020409	HPSE2 (ENSCPOG00000007040) #22	HPS1 (ENSCPOG00000007029) #23	PYROXD2 (ENSCPOG00000007018) #25	LOXL4 (ENSCPOG00000007010) #26	R3HCC1L (ENSCPOG00000007004) #27	CRTAC1 (ENSCPOG00000007832) #29	GOLGA7B (ENSCPOG00000031966) #30	SFRP5 (ENSCPOG00000021880) #31	ENSCPOG00000013283 #32	MARVELD1 (ENSCPOG00000024434) #33	AVPI1 (ENSCPOG00000024508) #34	PI4K2A (ENSCPOG00000004558) #36	MORN4 (ENSCPOG00000031641) #35	C10orf62 (ENSCPOG00000033899)	HOGA1 (ENSCPOG00000004555)	ANKRD2 (ENSCPOG00000035324) #37
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Long-tailed chinchilla	MODERN SPECIES	214	BLOC1S2 (ENSCLAG00000012543)	CWF19L1 (ENSCLAG00000007821)	CHUK (ENSCLAG00000003896) #8	ERLIN1 (ENSCLAG00000003770) #9	ENSCLAG00000003725	CPN1 (ENSCLAG00000003686) #10	DNMBP (ENSCLAG00000003323) #11	ABCC2 (ENSCLAG00000003041) #12	CUTC (ENSCLAG00000004139) #13	COX15 (ENSCLAG00000004070) #14	ENTPD7 (ENSCLAG00000004017) #15	SLC25A28 (ENSCLAG00000002948) #16	NKX2-3 (ENSCLAG00000002178) #17	GOT1 (ENSCLAG00000002152) #18	CNNM1 (ENSCLAG00000002026) #19	HPSE2 (ENSCLAG00000001979) #22	HPS1 (ENSCLAG00000003379) #23	PYROXD2 (ENSCLAG00000003225) #25	LOXL4 (ENSCLAG00000002846) #26	R3HCC1L (ENSCLAG00000002695) #27	CRTAC1 (ENSCLAG00000002601) #29	GOLGA7B (ENSCLAG00000002560) #30	SFRP5 (ENSCLAG00000002118) #31	ZFYVE27 (ENSCLAG00000002084) #32	MARVELD1 (ENSCLAG00000002008) #33	AVPI1 (ENSCLAG00000001993) #34	PI4K2A (ENSCLAG00000001867) #36	MORN4 (ENSCLAG00000001852) #35	HOGA1 (ENSCLAG00000002513)	ANKRD2 (ENSCLAG00000002245) #37	UBTD1 (ENSCLAG00000002195)
Degu	MODERN SPECIES	51	ENSODEG00000020374	ENSODEG00000016389	ENSODEG00000020402	CPN1 (ENSODEG00000016323) #10	DNMBP (ENSODEG00000017308) #11	ABCC2 (ENSODEG00000016634) #12	CUTC (ENSODEG00000016369) #13	ENSODEG00000016221 #14	ENSODEG00000016548	ENTPD7 (ENSODEG00000016776) #15	ENSODEG00000016497 #16	NKX2-3 (ENSODEG00000016861) #17	GOT1 (ENSODEG00000016726) #18	CNNM1 (ENSODEG00000016538) #19	ENSODEG00000016599	HPSE2 (ENSODEG00000016711) #22	HPS1 (ENSODEG00000016655) #23	PYROXD2 (ENSODEG00000016020) #25	LOXL4 (ENSODEG00000016342) #26	ENSODEG00000016477	ENSODEG00000016256 #27	CRTAC1 (ENSODEG00000015999) #29	GOLGA7B (ENSODEG00000016294) #30	SFRP5 (ENSODEG00000016215) #31	ZFYVE27 (ENSODEG00000016383) #32	MARVELD1 (ENSODEG00000016451) #33	AVPI1 (ENSODEG00000016690) #34	PI4K2A (ENSODEG00000016781) #36	ENSODEG00000016736 #35	HOGA1 (ENSODEG00000016324)	ANKRD2 (ENSODEG00000015804) #37
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Marmotini_b	ANCESTRAL SPECIES	97			ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Squirrel	MODERN SPECIES	236			CWF19L1 (ENSSTOG00000005784)	CHUK (ENSSTOG00000016412) #8	ERLIN1 (ENSSTOG00000028018) #9	CPN1 (ENSSTOG00000008870) #10	DNMBP (ENSSTOG00000008832) #11	ABCC2 (ENSSTOG00000009688) #12	CUTC (ENSSTOG00000010467) #13	COX15 (ENSSTOG00000010459) #14	ENTPD7 (ENSSTOG00000010447) #15	SLC25A28 (ENSSTOG00000027786) #16	NKX2-3 (ENSSTOG00000010439) #17	GOT1 (ENSSTOG00000007527) #18	CNNM1 (ENSSTOG00000019801) #19	HPSE2 (ENSSTOG00000003713) #22	HPS1 (ENSSTOG00000003686) #23	PYROXD2 (ENSSTOG00000003659) #25	LOXL4 (ENSSTOG00000026677) #26	R3HCC1L (ENSSTOG00000021571) #27	CRTAC1 (ENSSTOG00000012122) #29	GOLGA7B (ENSSTOG00000012116) #30	SFRP5 (ENSSTOG00000012113) #31	ZFYVE27 (ENSSTOG00000012103) #32	MARVELD1 (ENSSTOG00000006756) #33	AVPI1 (ENSSTOG00000029293) #34	PI4K2A (ENSSTOG00000006737) #36	MORN4 (ENSSTOG00000026926) #35	HOGA1 (ENSSTOG00000011929)	ENSSTOG00000020441	ANKRD2 (ENSSTOG00000006701) #37
Arctic ground squirrel	MODERN SPECIES	145		CWF19L1 (ENSUPAG00010018584)	CHUK (ENSUPAG00010018536) #8	ERLIN1 (ENSUPAG00010018524) #9	CPN1 (ENSUPAG00010018515) #10	DNMBP (ENSUPAG00010018385) #11	ABCC2 (ENSUPAG00010018333) #12	CUTC (ENSUPAG00010018317) #13	COX15 (ENSUPAG00010018308) #14	ENTPD7 (ENSUPAG00010018296) #15	SLC25A28 (ENSUPAG00010018285) #16	NKX2-3 (ENSUPAG00010018277) #17	ENSUPAG00010018264	GOT1 (ENSUPAG00010018253) #18	CNNM1 (ENSUPAG00010018225) #19	HPSE2 (ENSUPAG00010018211) #22	HPS1 (ENSUPAG00010015101) #23	PYROXD2 (ENSUPAG00010015034) #25	LOXL4 (ENSUPAG00010014949) #26	R3HCC1L (ENSUPAG00010014922) #27	CRTAC1 (ENSUPAG00010014843) #29	GOLGA7B (ENSUPAG00010014804) #30	SFRP5 (ENSUPAG00010014793) #31	ZFYVE27 (ENSUPAG00010014758) #32	MARVELD1 (ENSUPAG00010014753) #33	AVPI1 (ENSUPAG00010014745) #34	PI4K2A (ENSUPAG00010014721) #36	MORN4 (ENSUPAG00010014704) #35	ENSUPAG00010014696	HOGA1 (ENSUPAG00010014672)	ANKRD2 (ENSUPAG00010014650) #37
Alpin marmot	MODERN SPECIES	39	PKD2L1 (ENSMMMG00000022963)	BLOC1S2 (ENSMMMG00000022960)	CWF19L1 (ENSMMMG00000022947)	CHUK (ENSMMMG00000022931) #8	ERLIN1 (ENSMMMG00000022928) #9	CPN1 (ENSMMMG00000022921) #10	DNMBP (ENSMMMG00000022849) #11	ABCC2 (ENSMMMG00000022832) #12	ENSMMMG00000022829 #13	COX15 (ENSMMMG00000022826) #14	ENTPD7 (ENSMMMG00000022820) #15	SLC25A28 (ENSMMMG00000022817) #16	NKX2-3 (ENSMMMG00000022815) #17	GOT1 (ENSMMMG00000022811) #18	CNNM1 (ENSMMMG00000022793) #19	HPSE2 (ENSMMMG00000022778) #22	HPS1 (ENSMMMG00000021856) #23	PYROXD2 (ENSMMMG00000021833) #25	LOXL4 (ENSMMMG00000021798) #26	R3HCC1L (ENSMMMG00000021780) #27	CRTAC1 (ENSMMMG00000021757) #29	GOLGA7B (ENSMMMG00000021751) #30	SFRP5 (ENSMMMG00000021743) #31	ZFYVE27 (ENSMMMG00000021729) #32	AVPI1 (ENSMMMG00000021725) #34	PI4K2A (ENSMMMG00000021697) #36	ENSMMMG00000021693 #35	C10orf62 (ENSMMMG00000021691)	HOGA1 (ENSMMMG00000021688)	ANKRD2 (ENSMMMG00000021677) #37	UBTD1 (ENSMMMG00000021672)
Eurasian red squirrel	MODERN SPECIES	13	BLOC1S2 (ENSSVLG00005011909)	CWF19L1 (ENSSVLG00005012058)	CHUK (ENSSVLG00005012127) #8	ERLIN1 (ENSSVLG00005012186) #9	ENSSVLG00005012246	CPN1 (ENSSVLG00005012310) #10	DNMBP (ENSSVLG00005012459) #11	ABCC2 (ENSSVLG00005012720) #12	CUTC (ENSSVLG00005013175) #13	COX15 (ENSSVLG00005013263) #14	ENTPD7 (ENSSVLG00005013324) #15	SLC25A28 (ENSSVLG00005013360) #16	NKX2-3 (ENSSVLG00005013448) #17	GOT1 (ENSSVLG00005013505) #18	CNNM1 (ENSSVLG00005013611) #19	HPSE2 (ENSSVLG00005014098) #22	HPS1 (ENSSVLG00005014775) #23	PYROXD2 (ENSSVLG00005015178) #25	LOXL4 (ENSSVLG00005015215) #26	R3HCC1L (ENSSVLG00005015247) #27	CRTAC1 (ENSSVLG00005015382) #29	GOLGA7B (ENSSVLG00005015799) #30	SFRP5 (ENSSVLG00005015909) #31	ZFYVE27 (ENSSVLG00005015995) #32	MARVELD1 (ENSSVLG00005016317) #33	AVPI1 (ENSSVLG00005016336) #34	PI4K2A (ENSSVLG00005016376) #36	MORN4 (ENSSVLG00005016417) #35	HOGA1 (ENSSVLG00005016513)	C10orf62 (ENSSVLG00005016610)	ANKRD2 (ENSSVLG00005016694) #37
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Eulipotyphla	ANCESTRAL SPECIES	689																ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25
Common shrew	MODERN SPECIES	5311																HPSE2 (ENSSARG00000012941) #22
Hedgehog	MODERN SPECIES	2080																HPSE2 (ENSEEUG00000010291) #22	ENSEEUG00000010223 #23	PYROXD2 (ENSEEUG00000010117) #25
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1003			DNMBP (ENSMLUG00000012676) #11	ABCC2 (ENSMLUG00000013008) #12	ENSMLUG00000010337	ENSMLUG00000023141	CUTC (ENSMLUG00000013004) #13	COX15 (ENSMLUG00000012997) #14	ENTPD7 (ENSMLUG00000012990) #15	SLC25A28 (ENSMLUG00000003248) #16	NKX2-3 (ENSMLUG00000012413) #17	GOT1 (ENSMLUG00000007333) #18	CNNM1 (ENSMLUG00000007307) #19	ENSMLUG00000026702 #22	ENSMLUG00000007302	ENSMLUG00000007280 #22	HPS1 (ENSMLUG00000007252) #23	PYROXD2 (ENSMLUG00000007227) #25	LOXL4 (ENSMLUG00000000434) #26	R3HCC1L (ENSMLUG00000000430) #27	ENSMLUG00000023911	CRTAC1 (ENSMLUG00000015981) #29	GOLGA7B (ENSMLUG00000015977) #30	SFRP5 (ENSMLUG00000025702) #31	ZFYVE27 (ENSMLUG00000009377) #32	AVPI1 (ENSMLUG00000028157) #34	PI4K2A (ENSMLUG00000028240) #36	MORN4 (ENSMLUG00000009367) #35	HOGA1 (ENSMLUG00000009344)	ANKRD2 (ENSMLUG00000009324) #37	UBTD1 (ENSMLUG00000009303)
Microbat	MODERN SPECIES	1003					DNMBP (ENSMLUG00000012676) #11	ABCC2 (ENSMLUG00000013008) #12	ENSMLUG00000010337	ENSMLUG00000023141	CUTC (ENSMLUG00000013004) #13	COX15 (ENSMLUG00000012997) #14	ENTPD7 (ENSMLUG00000012990) #15	SLC25A28 (ENSMLUG00000003248) #16	NKX2-3 (ENSMLUG00000012413) #17	GOT1 (ENSMLUG00000007333) #18	CNNM1 (ENSMLUG00000007307) #19	ENSMLUG00000026702 #22	ENSMLUG00000007302	ENSMLUG00000007280 #22	HPS1 (ENSMLUG00000007252) #23	PYROXD2 (ENSMLUG00000007227) #25	LOXL4 (ENSMLUG00000000434) #26	R3HCC1L (ENSMLUG00000000430) #27	ENSMLUG00000023911	CRTAC1 (ENSMLUG00000015981) #29	GOLGA7B (ENSMLUG00000015977) #30	SFRP5 (ENSMLUG00000025702) #31	ZFYVE27 (ENSMLUG00000009377) #32	AVPI1 (ENSMLUG00000028157) #34	PI4K2A (ENSMLUG00000028240) #36	MORN4 (ENSMLUG00000009367) #35	HOGA1 (ENSMLUG00000009344)
Greater horseshoe bat	MODERN SPECIES	7	CWF19L1 (ENSRFEG00010008209)	CHUK (ENSRFEG00010008270) #8	ERLIN1 (ENSRFEG00010008321) #9	ENSRFEG00010008364	CPN1 (ENSRFEG00010008391) #10	DNMBP (ENSRFEG00010008477) #11	ABCC2 (ENSRFEG00010008701) #12	CUTC (ENSRFEG00010008821) #13	COX15 (ENSRFEG00010008880) #14	ENTPD7 (ENSRFEG00010008932) #15	ENSRFEG00010008955	SLC25A28 (ENSRFEG00010008966) #16	NKX2-3 (ENSRFEG00010009017) #17	GOT1 (ENSRFEG00010009053) #18	CNNM1 (ENSRFEG00010009120) #19	HPSE2 (ENSRFEG00010009250) #22	HPS1 (ENSRFEG00010009844) #23	PYROXD2 (ENSRFEG00010009945) #25	LOXL4 (ENSRFEG00010010101) #26	R3HCC1L (ENSRFEG00010010169) #27	CRTAC1 (ENSRFEG00010010283) #29	ENSRFEG00010010438	GOLGA7B (ENSRFEG00010010476) #30	SFRP5 (ENSRFEG00010010565) #31	ZFYVE27 (ENSRFEG00010010662) #32	MARVELD1 (ENSRFEG00010011202) #33	AVPI1 (ENSRFEG00010011224) #34	PI4K2A (ENSRFEG00010011240) #36	MORN4 (ENSRFEG00010011280) #35	HOGA1 (ENSRFEG00010011363)	ANKRD2 (ENSRFEG00010011484) #37
Megabat	MODERN SPECIES	2349																HPSE2 (ENSPVAG00000005676) #22
Equus	ANCESTRAL SPECIES	9	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Horse	MODERN SPECIES		CWF19L1 (ENSECAG00000016333)	CHUK (ENSECAG00000006588) #8	ERLIN1 (ENSECAG00000043715) #9	CYP2C23 (ENSECAG00000024865)	ENSECAG00000049976	CPN1 (ENSECAG00000024087) #10	DNMBP (ENSECAG00000010813) #11	ABCC2 (ENSECAG00000019828) #12	CUTC (ENSECAG00000006891) #13	COX15 (ENSECAG00000014039) #14	ENTPD7 (ENSECAG00000020147) #15	SLC25A28 (ENSECAG00000009356) #16	NKX2-3 (ENSECAG00000000092) #17	GOT1 (ENSECAG00000000095) #18	CNNM1 (ENSECAG00000000257) #19	HPSE2 (ENSECAG00000000353) #22	ENSECAG00000009538	ENSECAG00000058422	HPS1 (ENSECAG00000000393) #23	PYROXD2 (ENSECAG00000003748) #25	R3HCC1L (ENSECAG00000006861) #27	LOXL4 (ENSECAG00000005573) #26	CRTAC1 (ENSECAG00000007097) #29	GOLGA7B (ENSECAG00000007985) #30	SFRP5 (ENSECAG00000026876) #31	ZFYVE27 (ENSECAG00000008070) #32	MARVELD1 (ENSECAG00000035735) #33	AVPI1 (ENSECAG00000008293) #34	PI4K2A (ENSECAG00000008327) #36	MORN4 (ENSECAG00000053674) #35	HOGA1 (ENSECAG00000008762)
Donkey	MODERN SPECIES	11	CHUK (ENSEASG00005009284) #8	ERLIN1 (ENSEASG00005009396) #9	ENSEASG00005026076	ENSEASG00005009611	CPN1 (ENSEASG00005009613) #10	DNMBP (ENSEASG00005009614) #11	ABCC2 (ENSEASG00005009680) #12	CUTC (ENSEASG00005010008) #13	COX15 (ENSEASG00005010011) #14	ENTPD7 (ENSEASG00005010015) #15	SLC25A28 (ENSEASG00005036136) #16	ENSEASG00005010107	NKX2-3 (ENSEASG00005010109) #17	GOT1 (ENSEASG00005010111) #18	CNNM1 (ENSEASG00005010116) #19	HPSE2 (ENSEASG00005008341) #22	ENSEASG00005007924	HPS1 (ENSEASG00005008377) #23	PYROXD2 (ENSEASG00005008622) #25	LOXL4 (ENSEASG00005008627) #26	R3HCC1L (ENSEASG00005008634) #27	CRTAC1 (ENSEASG00005008642) #29	GOLGA7B (ENSEASG00005008652) #30	SFRP5 (ENSEASG00005027560) #31	ZFYVE27 (ENSEASG00005008657) #32	MARVELD1 (ENSEASG00005008661) #33	AVPI1 (ENSEASG00005008664) #34	PI4K2A (ENSEASG00005008665) #36	MORN4 (ENSEASG00005034389) #35	HOGA1 (ENSEASG00005008670)	C10orf62 (ENSEASG00005033481)
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Felidae	ANCESTRAL SPECIES	14	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Panthera	ANCESTRAL SPECIES	8	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
lion	MODERN SPECIES	11	PKD2L1 (ENSPLOG00000006098)	BLOC1S2 (ENSPLOG00000006186)	CWF19L1 (ENSPLOG00000006219)	CHUK (ENSPLOG00000006290) #8	ERLIN1 (ENSPLOG00000006354) #9	CPN1 (ENSPLOG00000006378) #10	DNMBP (ENSPLOG00000006463) #11	ABCC2 (ENSPLOG00000006642) #12	CUTC (ENSPLOG00000006732) #13	COX15 (ENSPLOG00000006773) #14	ENTPD7 (ENSPLOG00000006821) #15	SLC25A28 (ENSPLOG00000006856) #16	NKX2-3 (ENSPLOG00000006875) #17	GOT1 (ENSPLOG00000006894) #18	CNNM1 (ENSPLOG00000006934) #19	HPSE2 (ENSPLOG00000007079) #22	HPS1 (ENSPLOG00000007321) #23	PYROXD2 (ENSPLOG00000007348) #25	LOXL4 (ENSPLOG00000007390) #26	R3HCC1L (ENSPLOG00000007438) #27	CRTAC1 (ENSPLOG00000007504) #29	GOLGA7B (ENSPLOG00000007655) #30	SFRP5 (ENSPLOG00000007685) #31	ZFYVE27 (ENSPLOG00000007744) #32	MARVELD1 (ENSPLOG00000007915) #33	AVPI1 (ENSPLOG00000007926) #34	PI4K2A (ENSPLOG00000007948) #36	MORN4 (ENSPLOG00000007986) #35	HOGA1 (ENSPLOG00000008038)	ANKRD2 (ENSPLOG00000008119) #37	UBTD1 (ENSPLOG00000008292)
leopard	MODERN SPECIES	33	PKD2L1 (ENSPPRG00000003539)	BLOC1S2 (ENSPPRG00000005194)	CWF19L1 (ENSPPRG00000005516)	CHUK (ENSPPRG00000005992) #8	ERLIN1 (ENSPPRG00000006192) #9	CPN1 (ENSPPRG00000008460) #10	DNMBP (ENSPPRG00000009541) #11	ABCC2 (ENSPPRG00000010266) #12	CUTC (ENSPPRG00000016037) #13	COX15 (ENSPPRG00000018767) #14	ENTPD7 (ENSPPRG00000024664) #15	SLC25A28 (ENSPPRG00000024601) #16	NKX2-3 (ENSPPRG00000024447) #17	GOT1 (ENSPPRG00000024393) #18	CNNM1 (ENSPPRG00000024142) #19	HPSE2 (ENSPPRG00000000250) #22	HPS1 (ENSPPRG00000000907) #23	PYROXD2 (ENSPPRG00000001210) #25	LOXL4 (ENSPPRG00000001920) #26	ENSPPRG00000002263 #27	CRTAC1 (ENSPPRG00000003319) #29	GOLGA7B (ENSPPRG00000003605) #30	SFRP5 (ENSPPRG00000004042) #31	ZFYVE27 (ENSPPRG00000006534) #32	MARVELD1 (ENSPPRG00000021353) #33	AVPI1 (ENSPPRG00000007713) #34	PI4K2A (ENSPPRG00000007831) #36	MORN4 (ENSPPRG00000008387) #35	HOGA1 (ENSPPRG00000008700)	ANKRD2 (ENSPPRG00000009388) #37	UBTD1 (ENSPPRG00000009577)
Tiger	MODERN SPECIES	136	PKD2L1 (ENSPTIG00000011355)	BLOC1S2 (ENSPTIG00000010062)	CWF19L1 (ENSPTIG00000009695)	CHUK (ENSPTIG00000007746) #8	ERLIN1 (ENSPTIG00000006952) #9	CPN1 (ENSPTIG00000006187) #10	DNMBP (ENSPTIG00000000911) #11	ABCC2 (ENSPTIG00000021926) #12	CUTC (ENSPTIG00000021839) #13	COX15 (ENSPTIG00000021530) #14	ENTPD7 (ENSPTIG00000021486) #15	SLC25A28 (ENSPTIG00000020921) #16	NKX2-3 (ENSPTIG00000020694) #17	GOT1 (ENSPTIG00000020444) #18	CNNM1 (ENSPTIG00000018523) #19	HPSE2 (ENSPTIG00000013671) #22	HPS1 (ENSPTIG00000008067) #23	PYROXD2 (ENSPTIG00000007293) #25	LOXL4 (ENSPTIG00000006871) #26	ENSPTIG00000005720 #27	CRTAC1 (ENSPTIG00000021313) #29	GOLGA7B (ENSPTIG00000020956) #30	ZFYVE27 (ENSPTIG00000018038) #32	AVPI1 (ENSPTIG00000017197) #34	PI4K2A (ENSPTIG00000016813) #36	MORN4 (ENSPTIG00000015742) #35	C10orf62 (ENSPTIG00000015070)	HOGA1 (ENSPTIG00000014480)	ANKRD2 (ENSPTIG00000012729) #37	UBTD1 (ENSPTIG00000012419)	MMS19 (ENSPTIG00000021793)
Cat	MODERN SPECIES	242	WNT8B (ENSFCAG00000006451)	SCD (ENSFCAG00000031590)	PKD2L1 (ENSFCAG00000006445)	BLOC1S2 (ENSFCAG00000032495)	CWF19L1 (ENSFCAG00000010585)	CHUK (ENSFCAG00000004930) #8	ERLIN1 (ENSFCAG00000029825) #10	DNMBP (ENSFCAG00000014383) #11	ABCC2 (ENSFCAG00000014380) #12	COX15 (ENSFCAG00000014378) #14	ENTPD7 (ENSFCAG00000014376) #15	SLC25A28 (ENSFCAG00000045981) #16	NKX2-3 (ENSFCAG00000042789) #17	GOT1 (ENSFCAG00000028066) #18	CNNM1 (ENSFCAG00000014375) #19	HPSE2 (ENSFCAG00000046015) #22	HPS1 (ENSFCAG00000009348) #23	PYROXD2 (ENSFCAG00000009346) #25	LOXL4 (ENSFCAG00000009345) #26	R3HCC1L (ENSFCAG00000030301) #27	CRTAC1 (ENSFCAG00000013435) #29	SFRP5 (ENSFCAG00000038195) #31	ZFYVE27 (ENSFCAG00000013433) #32	MARVELD1 (ENSFCAG00000041291) #33	AVPI1 (ENSFCAG00000027156) #34	PI4K2A (ENSFCAG00000013431) #36	MORN4 (ENSFCAG00000028227) #35	HOGA1 (ENSFCAG00000024587)	ANKRD2 (ENSFCAG00000013428) #37	UBTD1 (ENSFCAG00000024320)	MMS19 (ENSFCAG00000013426)
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Mustelinae	ANCESTRAL SPECIES	29	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
American mink	MODERN SPECIES	25	BLOC1S2 (ENSNVIG00000018993)	CWF19L1 (ENSNVIG00000019007)	CHUK (ENSNVIG00000019034) #8	ERLIN1 (ENSNVIG00000019050) #9	CPN1 (ENSNVIG00000019110) #10	DNMBP (ENSNVIG00000019147) #11	ABCC2 (ENSNVIG00000019248) #12	ENSNVIG00000019358	CUTC (ENSNVIG00000019369) #13	COX15 (ENSNVIG00000019404) #14	ENTP7 (ENSNVIG00000019452) #15	SLC25A28 (ENSNVIG00000019475) #16	NKX2-3 (ENSNVIG00000019485) #17	GOT1 (ENSNVIG00000019493) #18	CNNM1 (ENSNVIG00000019501) #19	HPSE2 (ENSNVIG00000019528) #22	ENSNVIG00000019609	HPS1 (ENSNVIG00000019617) #23	PYROXD2 (ENSNVIG00000019708) #25	LOXL4 (ENSNVIG00000019721) #26	R3HCC1L (ENSNVIG00000019732) #27	CRTAC1 (ENSNVIG00000019780) #29	GOLGA7B (ENSNVIG00000019876) #30	SFRP5 (ENSNVIG00000019893) #31	ZFYVE27 (ENSNVIG00000019905) #32	MARVELD1 (ENSNVIG00000019972) #33	AVPI1 (ENSNVIG00000019986) #34	PI4K2A (ENSNVIG00000020017) #36	MORN4 (ENSNVIG00000020040) #35	HOGA1 (ENSNVIG00000020057)	ANKRD2 (ENSNVIG00000020081) #37
Ferret	DUPLICATION
Ferret	MODERN SPECIES	187	CHUK (ENSMPUG00000016978) #8	ERLIN1 (ENSMPUG00000016979) #9	CPN1 (ENSMPUG00000016982) #10	DNMBP (ENSMPUG00000016984) #11	ABCC2 (ENSMPUG00000016985) #12	CUTC (ENSMPUG00000016986) #13	COX15 (ENSMPUG00000016987) #14	ENTPD7 (ENSMPUG00000016988) #15	SLC25A28 (ENSMPUG00000016989) #16	ENSMPUG00000016991	NKX2-3 (ENSMPUG00000016992) #17	ENSMPUG00000016995	GOT1 (ENSMPUG00000016996) #18	CNNM1 (ENSMPUG00000016997) #19	ENSMPUG00000016998 #22	HPSE2 (ENSMPUG00000016999) #22	HPS1 (ENSMPUG00000017000) #23	PYROXD2 (ENSMPUG00000017020) #25	LOXL4 (ENSMPUG00000017023) #26	R3HCC1L (ENSMPUG00000017025) #27	CRTAC1 (ENSMPUG00000017026) #29	GOLGA7B (ENSMPUG00000017027) #30	ENSMPUG00000017031	ZFYVE27 (ENSMPUG00000017032) #32	SFRP5 (ENSMPUG00000017033) #31	AVPI1 (ENSMPUG00000017034) #34	PI4K2A (ENSMPUG00000017036) #36	MORN4 (ENSMPUG00000017037) #35	HOGA1 (ENSMPUG00000017038)	ANKRD2 (ENSMPUG00000017039) #37	UBTD1 (ENSMPUG00000017040)
Ferret	MODERN SPECIES	187	CWF19L1 (ENSMPUG00000016977)	CHUK (ENSMPUG00000016978) #8	ERLIN1 (ENSMPUG00000016979) #9	CPN1 (ENSMPUG00000016982) #10	DNMBP (ENSMPUG00000016984) #11	ABCC2 (ENSMPUG00000016985) #12	CUTC (ENSMPUG00000016986) #13	COX15 (ENSMPUG00000016987) #14	ENTPD7 (ENSMPUG00000016988) #15	SLC25A28 (ENSMPUG00000016989) #16	ENSMPUG00000016991	NKX2-3 (ENSMPUG00000016992) #17	ENSMPUG00000016995	GOT1 (ENSMPUG00000016996) #18	CNNM1 (ENSMPUG00000016997) #19	ENSMPUG00000016998 #22	HPSE2 (ENSMPUG00000016999) #22	HPS1 (ENSMPUG00000017000) #23	PYROXD2 (ENSMPUG00000017020) #25	LOXL4 (ENSMPUG00000017023) #26	R3HCC1L (ENSMPUG00000017025) #27	CRTAC1 (ENSMPUG00000017026) #29	GOLGA7B (ENSMPUG00000017027) #30	ENSMPUG00000017031	ZFYVE27 (ENSMPUG00000017032) #32	SFRP5 (ENSMPUG00000017033) #31	AVPI1 (ENSMPUG00000017034) #34	PI4K2A (ENSMPUG00000017036) #36	MORN4 (ENSMPUG00000017037) #35	HOGA1 (ENSMPUG00000017038)	ANKRD2 (ENSMPUG00000017039) #37
Ursidae	ANCESTRAL SPECIES	5	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000015060.e.b.a	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Giant Panda	MODERN SPECIES	16	CWF19L1 (ENSAMEG00000006811)	CHUK (ENSAMEG00000006839) #8	ENSAMEG00000006951 #9	ENSAMEG00000029309	DNMBP (ENSAMEG00000006999) #11	ENSAMEG00000024466	ABCC2 (ENSAMEG00000007018) #12	CUTC (ENSAMEG00000007211) #13	COX15 (ENSAMEG00000007219) #14	ENTPD7 (ENSAMEG00000007233) #15	SLC25A28 (ENSAMEG00000007268) #16	NKX2-3 (ENSAMEG00000029439) #17	GOT1 (ENSAMEG00000003623) #18	CNNM1 (ENSAMEG00000025498) #19	ENSAMEG00000030373	HPSE2 (ENSAMEG00000000060) #22	HPS1 (ENSAMEG00000000061) #23	PYROXD2 (ENSAMEG00000000072) #25	LOXL4 (ENSAMEG00000000074) #26	R3HCC1L (ENSAMEG00000000078) #27	GOLGA7B (ENSAMEG00000000088) #30	CRTAC1 (ENSAMEG00000000081) #29	SFRP5 (ENSAMEG00000000089) #31	ZFYVE27 (ENSAMEG00000000090) #32	MARVELD1 (ENSAMEG00000000095) #33	ENSAMEG00000000096 #34	PI4K2A (ENSAMEG00000000097) #36	MORN4 (ENSAMEG00000000101) #35	HOGA1 (ENSAMEG00000000107)	ANKRD2 (ENSAMEG00000000108) #37	UBTD1 (ENSAMEG00000028810)
Ursus	ANCESTRAL SPECIES	7	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000015060.e.b.a	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	92	CHUK (ENSUMAG00000022784) #8	ERLIN1 (ENSUMAG00000022782) #9	CPN1 (ENSUMAG00000022776) #10	DNMBP (ENSUMAG00000022748) #11	ENSUMAG00000022738	ABCC2 (ENSUMAG00000022691) #12	CUTC (ENSUMAG00000022679) #13	COX15 (ENSUMAG00000022676) #14	ENTPD7 (ENSUMAG00000022662) #15	SLC25A28 (ENSUMAG00000022646) #16	GOT1 (ENSUMAG00000022640) #18	ENSUMAG00000022637 #19	ENSUMAG00000022634 #22	ENSUMAG00000022632	ENSUMAG00000022628	ENSUMAG00000022623 #22	HPS1 (ENSUMAG00000022592) #23	PYROXD2 (ENSUMAG00000022551) #25	LOXL4 (ENSUMAG00000022540) #26	R3HCC1L (ENSUMAG00000022536) #27	CRTAC1 (ENSUMAG00000022534) #29	GOLGA7B (ENSUMAG00000022532) #30	ZFYVE27 (ENSUMAG00000022526) #32	AVPI1 (ENSUMAG00000022522) #34	PI4K2A (ENSUMAG00000022461) #36	MORN4 (ENSUMAG00000022435) #35	C10orf62 (ENSUMAG00000022429)	HOGA1 (ENSUMAG00000022428)	ANKRD2 (ENSUMAG00000022422) #37	UBTD1 (ENSUMAG00000022418)	MMS19 (ENSUMAG00000022094)
Polar bear	MODERN SPECIES	92	PKD2L1 (ENSUMAG00000022795)	BLOC1S2 (ENSUMAG00000022792)	CWF19L1 (ENSUMAG00000022786)	CHUK (ENSUMAG00000022784) #8	ERLIN1 (ENSUMAG00000022782) #9	CPN1 (ENSUMAG00000022776) #10	DNMBP (ENSUMAG00000022748) #11	ENSUMAG00000022738	ABCC2 (ENSUMAG00000022691) #12	CUTC (ENSUMAG00000022679) #13	COX15 (ENSUMAG00000022676) #14	ENTPD7 (ENSUMAG00000022662) #15	SLC25A28 (ENSUMAG00000022646) #16	GOT1 (ENSUMAG00000022640) #18	ENSUMAG00000022637 #19	ENSUMAG00000022634 #22	ENSUMAG00000022632	ENSUMAG00000022628	ENSUMAG00000022623 #22	HPS1 (ENSUMAG00000022592) #23	PYROXD2 (ENSUMAG00000022551) #25	LOXL4 (ENSUMAG00000022540) #26	R3HCC1L (ENSUMAG00000022536) #27	CRTAC1 (ENSUMAG00000022534) #29	GOLGA7B (ENSUMAG00000022532) #30	ZFYVE27 (ENSUMAG00000022526) #32	AVPI1 (ENSUMAG00000022522) #34	PI4K2A (ENSUMAG00000022461) #36	MORN4 (ENSUMAG00000022435) #35	C10orf62 (ENSUMAG00000022429)	HOGA1 (ENSUMAG00000022428)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	930														ENSUAMG00000020343	ENSUAMG00000020342	HPSE2 (ENSUAMG00000020340) #22	HPS1 (ENSUAMG00000020104) #23	PYROXD2 (ENSUAMG00000020103) #25
American black bear	MODERN SPECIES	1469																ENSUAMG00000006032 #22	ENSUAMG00000006027
Canidae	ANCESTRAL SPECIES	16	ENSGT00940000157274	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872.b #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Red fox	DUPLICATION
Red fox	MODERN SPECIES		ERLIN1 (ENSVVUG00000024839) #9	ENSVVUG00000024837	CPN1 (ENSVVUG00000024833) #10	ENSVVUG00000024832	DNMBP (ENSVVUG00000024611) #11	ABCC2 (ENSVVUG00000023522) #12	ENSVVUG00000023442	CUTC (ENSVVUG00000023417) #13	COX15 (ENSVVUG00000023414) #14	ENTPD7 (ENSVVUG00000023409) #15	SLC25A28 (ENSVVUG00000023405) #16	NKX2-3 (ENSVVUG00000023404) #17	GOT1 (ENSVVUG00000023396) #18	CNNM1 (ENSVVUG00000023380) #19	ENSVVUG00000023377 #22	HPSE2 (ENSVVUG00000023366) #22	HPS1 (ENSVVUG00000023341) #23	PYROXD2 (ENSVVUG00000023335) #25	LOXL4 (ENSVVUG00000023322) #26	R3HCC1L (ENSVVUG00000023317) #27	CRTAC1 (ENSVVUG00000023277) #29	SFRP5 (ENSVVUG00000023267) #31	ZFYVE27 (ENSVVUG00000023261) #32	MARVELD1 (ENSVVUG00000023256) #33	AVPI1 (ENSVVUG00000023255) #34	PI4K2A (ENSVVUG00000023252) #36	MORN4 (ENSVVUG00000023247) #35	C10orf62 (ENSVVUG00000023240)	HOGA1 (ENSVVUG00000023238)	ANKRD2 (ENSVVUG00000023235) #37	UBTD1 (ENSVVUG00000023233)
Red fox	MODERN SPECIES		CHUK (ENSVVUG00000024844) #8	ERLIN1 (ENSVVUG00000024839) #9	ENSVVUG00000024837	CPN1 (ENSVVUG00000024833) #10	ENSVVUG00000024832	DNMBP (ENSVVUG00000024611) #11	ABCC2 (ENSVVUG00000023522) #12	ENSVVUG00000023442	CUTC (ENSVVUG00000023417) #13	COX15 (ENSVVUG00000023414) #14	ENTPD7 (ENSVVUG00000023409) #15	SLC25A28 (ENSVVUG00000023405) #16	NKX2-3 (ENSVVUG00000023404) #17	GOT1 (ENSVVUG00000023396) #18	CNNM1 (ENSVVUG00000023380) #19	ENSVVUG00000023377 #22	HPSE2 (ENSVVUG00000023366) #22	HPS1 (ENSVVUG00000023341) #23	PYROXD2 (ENSVVUG00000023335) #25	LOXL4 (ENSVVUG00000023322) #26	R3HCC1L (ENSVVUG00000023317) #27	CRTAC1 (ENSVVUG00000023277) #29	SFRP5 (ENSVVUG00000023267) #31	ZFYVE27 (ENSVVUG00000023261) #32	MARVELD1 (ENSVVUG00000023256) #33	AVPI1 (ENSVVUG00000023255) #34	PI4K2A (ENSVVUG00000023252) #36	MORN4 (ENSVVUG00000023247) #35	C10orf62 (ENSVVUG00000023240)	HOGA1 (ENSVVUG00000023238)	ANKRD2 (ENSVVUG00000023235) #37
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00940000162741.j.l.b.b	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049.i #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872.b #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Dog	MODERN SPECIES	20	CWF19L1 (ENSCAFG00845016322)	CHUK (ENSCAFG00845016257) #8	ERLIN1 (ENSCAFG00845016181) #9	CPN1 (ENSCAFG00845016127) #10	ENSCAFG00845016095	DNMBP (ENSCAFG00845030948) #11	ABCC2 (ENSCAFG00845030901) #12	ENSCAFG00845030866	CUTC (ENSCAFG00845030834) #13	COX15 (ENSCAFG00845030808) #14	ENTPD7 (ENSCAFG00845030797) #15	SLC25A28 (ENSCAFG00845030792) #16	NKX2-3 (ENSCAFG00845030787) #17	GOT1 (ENSCAFG00845030772) #18	CNNM1 (ENSCAFG00845030755) #19	HPSE2 (ENSCAFG00845030674) #22	HPS1 (ENSCAFG00845030620) #23	ENSCAFG00845030609	PYROXD2 (ENSCAFG00845030554) #25	LOXL4 (ENSCAFG00845030491) #26	R3HCC1L (ENSCAFG00845030456) #27	GOLGA7B (ENSCAFG00845030415) #30	CRTAC1 (ENSCAFG00845030290) #29	SFRP5 (ENSCAFG00845030226) #31	ZFYVE27 (ENSCAFG00845030149) #32	MARVELD1 (ENSCAFG00845030060) #33	ENSCAFG00845030048 #34	PI4K2A (ENSCAFG00845029994) #36	MORN4 (ENSCAFG00845029947) #35	C10orf62 (ENSCAFG00845029917)	HOGA1 (ENSCAFG00845029887)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	165	CHUK (ENSCAFG00020007624) #8	ERLIN1 (ENSCAFG00020007585) #9	CPN1 (ENSCAFG00020007578) #10	ENSCAFG00020007576	DNMBP (ENSCAFG00020007574) #11	ABCC2 (ENSCAFG00020007504) #12	ENSCAFG00020007494	CUTC (ENSCAFG00020007478) #13	COX15 (ENSCAFG00020007471) #14	ENTPD7 (ENSCAFG00020007458) #15	SLC25A28 (ENSCAFG00020007452) #16	NKX2-3 (ENSCAFG00020007443) #17	GOT1 (ENSCAFG00020007440) #18	CNNM1 (ENSCAFG00020007396) #19	ENSCAFG00020007369 #22	HPSE2 (ENSCAFG00020007338) #22	HPS1 (ENSCAFG00020006365) #23	PYROXD2 (ENSCAFG00020006321) #25	LOXL4 (ENSCAFG00020006249) #26	R3HCC1L (ENSCAFG00020006245) #27	CRTAC1 (ENSCAFG00020006114) #29	GOLGA7B (ENSCAFG00020006112) #30	SFRP5 (ENSCAFG00020006107) #31	ZFYVE27 (ENSCAFG00020006105) #32	MARVELD1 (ENSCAFG00020006102) #33	ENSCAFG00020006100 #34	PI4K2A (ENSCAFG00020006060) #36	MORN4 (ENSCAFG00020006048) #35	C10orf62 (ENSCAFG00020006047)	HOGA1 (ENSCAFG00020006037)	ANKRD2 (ENSCAFG00020006014) #37
Dingo	MODERN SPECIES	165	CWF19L1 (ENSCAFG00020008275)	CHUK (ENSCAFG00020007624) #8	ERLIN1 (ENSCAFG00020007585) #9	CPN1 (ENSCAFG00020007578) #10	ENSCAFG00020007576	DNMBP (ENSCAFG00020007574) #11	ABCC2 (ENSCAFG00020007504) #12	ENSCAFG00020007494	CUTC (ENSCAFG00020007478) #13	COX15 (ENSCAFG00020007471) #14	ENTPD7 (ENSCAFG00020007458) #15	SLC25A28 (ENSCAFG00020007452) #16	NKX2-3 (ENSCAFG00020007443) #17	GOT1 (ENSCAFG00020007440) #18	CNNM1 (ENSCAFG00020007396) #19	ENSCAFG00020007369 #22	HPSE2 (ENSCAFG00020007338) #22	HPS1 (ENSCAFG00020006365) #23	PYROXD2 (ENSCAFG00020006321) #25	LOXL4 (ENSCAFG00020006249) #26	R3HCC1L (ENSCAFG00020006245) #27	CRTAC1 (ENSCAFG00020006114) #29	GOLGA7B (ENSCAFG00020006112) #30	SFRP5 (ENSCAFG00020006107) #31	ZFYVE27 (ENSCAFG00020006105) #32	MARVELD1 (ENSCAFG00020006102) #33	ENSCAFG00020006100 #34	PI4K2A (ENSCAFG00020006060) #36	MORN4 (ENSCAFG00020006048) #35	C10orf62 (ENSCAFG00020006047)	HOGA1 (ENSCAFG00020006037)
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Suina	ANCESTRAL SPECIES	6	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Pig	MODERN SPECIES	5	BLOC1S2 (ENSSSCG00000010551)	CWF19L1 (ENSSSCG00000010550)	CHUK (ENSSSCG00000010548) #8	ENSSSCG00000010546	ENSSSCG00000058016	CPN1 (ENSSSCG00000010545) #10	DNMBP (ENSSSCG00000010544) #11	ABCC2 (ENSSSCG00000010543) #12	CUTC (ENSSSCG00000010542) #13	COX15 (ENSSSCG00000010541) #14	ENTPD7 (ENSSSCG00000010540) #15	SLC25A28 (ENSSSCG00000037536) #16	NKX2-3 (ENSSSCG00000010538) #17	GOT1 (ENSSSCG00000010537) #18	CNNM1 (ENSSSCG00000010536) #19	HPSE2 (ENSSSCG00000010535) #22	HPS1 (ENSSSCG00000010534) #23	PYROXD2 (ENSSSCG00000010533) #25	LOXL4 (ENSSSCG00000010532) #26	ENSSSCG00000010531 #27	CRTAC1 (ENSSSCG00000010530) #29	GOLGA7B (ENSSSCG00000040359) #30	SFRP5 (ENSSSCG00000010529) #31	ZFYVE27 (ENSSSCG00000010528) #32	MARVELD1 (ENSSSCG00000010527) #33	AVPI1 (ENSSSCG00000036824) #34	PI4K2A (ENSSSCG00000010525) #36	MORN4 (ENSSSCG00000036954) #35	HOGA1 (ENSSSCG00000010523)	ANKRD2 (ENSSSCG00000010522) #37	UBTD1 (ENSSSCG00000010521)
Chacoan peccary	MODERN SPECIES	955	BLOC1S2 (ENSCWAG00000018677)	CWF19L1 (ENSCWAG00000018713)	CHUK (ENSCWAG00000018766) #8	ERLIN1 (ENSCWAG00000018810) #9	ENSCWAG00000018841	CPN1 (ENSCWAG00000018888) #10	DNMBP (ENSCWAG00000018951) #11	ABCC2 (ENSCWAG00000019120) #12	CUTC (ENSCWAG00000019263) #13	COX15 (ENSCWAG00000019302) #14	ENTPD7 (ENSCWAG00000019327) #15	SLC25A28 (ENSCWAG00000019343) #16	NKX2-3 (ENSCWAG00000019366) #17	GOT1 (ENSCWAG00000019394) #18	CNNM1 (ENSCWAG00000019424) #19	HPSE2 (ENSCWAG00000019523) #22	HPS1 (ENSCWAG00000020101) #23	PYROXD2 (ENSCWAG00000020183) #25	LOXL4 (ENSCWAG00000020224) #26	R3HCC1L (ENSCWAG00000020239) #27	CRTAC1 (ENSCWAG00000020281) #29	GOLGA7B (ENSCWAG00000011885) #30	SFRP5 (ENSCWAG00000011979) #31	ZFYVE27 (ENSCWAG00000012082) #32	MARVELD1 (ENSCWAG00000012717) #33	AVPI1 (ENSCWAG00000012736) #34	PI4K2A (ENSCWAG00000012772) #36	MORN4 (ENSCWAG00000012823) #35	HOGA1 (ENSCWAG00000012895)	ANKRD2 (ENSCWAG00000013015) #37	UBTD1 (ENSCWAG00000013405)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Camelidae	ANCESTRAL SPECIES	4	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Arabian camel	MODERN SPECIES	2	BLOC1S2 (ENSCDRG00005019254)	CWF19L1 (ENSCDRG00005019282)	CHUK (ENSCDRG00005019321) #8	ERLIN1 (ENSCDRG00005019412) #9	ENSCDRG00005019453	CPN1 (ENSCDRG00005003276) #10	DNMBP (ENSCDRG00005003309) #11	ABCC2 (ENSCDRG00005003408) #12	CUTC (ENSCDRG00005003453) #13	COX15 (ENSCDRG00005003507) #14	ENTPD7 (ENSCDRG00005003625) #15	SLC25A28 (ENSCDRG00005003655) #16	NKX2-3 (ENSCDRG00005003725) #17	GOT1 (ENSCDRG00005003760) #18	CNNM1 (ENSCDRG00005003816) #19	HPSE2 (ENSCDRG00005003939) #22	HPS1 (ENSCDRG00005004078) #23	PYROXD2 (ENSCDRG00005004408) #25	LOXL4 (ENSCDRG00005004555) #26	R3HCC1L (ENSCDRG00005004585) #27	CRTAC1 (ENSCDRG00005004684) #29	GOLGA7B (ENSCDRG00005004929) #30	SFRP5 (ENSCDRG00005004990) #31	ZFYVE27 (ENSCDRG00005005050) #32	MARVELD1 (ENSCDRG00005005688) #33	AVPI1 (ENSCDRG00005005710) #34	PI4K2A (ENSCDRG00005005722) #36	MORN4 (ENSCDRG00005005757) #35	HOGA1 (ENSCDRG00005005801)	C10orf62 (ENSCDRG00005005880)	ANKRD2 (ENSCDRG00005005898) #37
Alpaca	MODERN SPECIES	3455								CPN1 (ENSVPAG00000005013) #10	DNMBP (ENSVPAG00000005006) #11	ABCC2 (ENSVPAG00000005004) #12	CUTC (ENSVPAG00000005003) #13	COX15 (ENSVPAG00000005001) #14	ENTPD7 (ENSVPAG00000005000) #15	GOT1 (ENSVPAG00000004999) #18	CNNM1 (ENSVPAG00000004998) #19	HPSE2 (ENSVPAG00000004997) #22	ENSVPAG00000004996 #23
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Cetacea	ANCESTRAL SPECIES	15	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Blue whale	MODERN SPECIES	7	ERLIN1 (ENSBMSG00010020428) #9	ENSBMSG00010020464	ENSBMSG00010020488	CPN1 (ENSBMSG00010020507) #10	DNMBP (ENSBMSG00010020572) #11	ENSBMSG00010020666	ENSBMSG00010020695 #12	ENSBMSG00010020724 #12	CUTC (ENSBMSG00010020742) #13	COX15 (ENSBMSG00010020776) #14	ENTPD7 (ENSBMSG00010020812) #15	SLC25A28 (ENSBMSG00010020858) #16	NKX2-3 (ENSBMSG00010020878) #17	GOT1 (ENSBMSG00010020897) #18	CNNM1 (ENSBMSG00010020911) #19	HPSE2 (ENSBMSG00010020945) #22	ENSBMSG00010020978	HPS1 (ENSBMSG00010021004) #23	PYROXD2 (ENSBMSG00010021039) #25	LOXL4 (ENSBMSG00010021080) #26	R3HCC1L (ENSBMSG00010021112) #27	CRTAC1 (ENSBMSG00010021195) #29	ZFYVE27 (ENSBMSG00010021315) #32	ENSBMSG00010021433	SFRP5 (ENSBMSG00010021454) #31	MARVELD1 (ENSBMSG00010021463) #33	AVPI1 (ENSBMSG00010021470) #34	PI4K2A (ENSBMSG00010021477) #36	ENSBMSG00010021499 #35	HOGA1 (ENSBMSG00010021510)	ANKRD2 (ENSBMSG00010021528) #37
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00950000182965.b.ab	ENSGT00940000158235 #10	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Sperm whale	MODERN SPECIES	12	ENSPCTG00005017035	ENSPCTG00005016969	ENSPCTG00005016952	CPN1 (ENSPCTG00005016823) #10	ENSPCTG00005016793	DNMBP (ENSPCTG00005016252) #11	ABCC2 (ENSPCTG00005015837) #12	CUTC (ENSPCTG00005015684) #13	COX15 (ENSPCTG00005015651) #14	ENTPD7 (ENSPCTG00005015609) #15	SLC25A28 (ENSPCTG00005015533) #16	ENSPCTG00005015512	NKX2-3 (ENSPCTG00005015458) #17	GOT1 (ENSPCTG00005015383) #18	CNNM1 (ENSPCTG00005015224) #19	HPSE2 (ENSPCTG00005014453) #22	ENSPCTG00005014329 #23	R3HCC1L (ENSPCTG00005014293) #27	SFRP5 (ENSPCTG00005014239) #31	ZFYVE27 (ENSPCTG00005013655) #32	MARVELD1 (ENSPCTG00005013584) #33	AVPI1 (ENSPCTG00005013541) #34	PI4K2A (ENSPCTG00005013487) #36	ENSPCTG00005013431	PGAM1 (ENSPCTG00005013367)	EXOSC1 (ENSPCTG00005013217)	ZDHHC16 (ENSPCTG00005012891)	MMS19 (ENSPCTG00005012756)	RRP12 (ENSPCTG00005011281)	FRAT2 (ENSPCTG00005011203)	FRAT1 (ENSPCTG00005011174)
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00950000182965.b.ab	ENSGT00940000158235 #10	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Dolphin	MODERN SPECIES	1960																HPSE2 (ENSTTRG00000016716) #22
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00950000182965.b.ab	ENSGT00940000158235 #10	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00950000182922.a.b.e.b	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Vaquita	MODERN SPECIES	7	ERLIN1 (ENSPSNG00000011494) #9	ENSPSNG00000011395	ENSPSNG00000011294	CPN1 (ENSPSNG00000011204) #10	ENSPSNG00000011167	DNMBP (ENSPSNG00000010680) #11	ABCC2 (ENSPSNG00000010279) #12	CUTC (ENSPSNG00000010192) #13	COX15 (ENSPSNG00000021978) #14	ENTPD7 (ENSPSNG00000021961) #15	SLC25A28 (ENSPSNG00000021946) #16	ENSPSNG00000021934	NKX2-3 (ENSPSNG00000021922) #17	GOT1 (ENSPSNG00000021906) #18	CNNM1 (ENSPSNG00000021881) #19	HPSE2 (ENSPSNG00000021752) #22	HPS1 (ENSPSNG00000021605) #23	LOXL4 (ENSPSNG00000021534) #26	R3HCC1L (ENSPSNG00000021458) #27	CRTAC1 (ENSPSNG00000021304) #29	GOLGA7B (ENSPSNG00000021258) #30	SFRP5 (ENSPSNG00000021235) #31	ZFYVE27 (ENSPSNG00000021039) #32	MARVELD1 (ENSPSNG00000020968) #33	AVPI1 (ENSPSNG00000020938) #34	PI4K2A (ENSPSNG00000020904) #36	MORN4 (ENSPSNG00000020862) #35	HOGA1 (ENSPSNG00000020786)	ANKRD2 (ENSPSNG00000020585) #37	UBTD1 (ENSPSNG00000020532)	MMS19 (ENSPSNG00000020454)
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000163402	ENSGT00950000182965.b.`b.a	ENSGT00940000158235 #10	ENSGT00950000183178.b.a.kb	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00950000182922.a.b.e.b	ENSGT00940000157556 #17	ENSGT00390000005254.i.a.b.d.a.a.b	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Narwhal	MODERN SPECIES	311	ENSMMNG00015021772	ENSMMNG00015021751	CPN1 (ENSMMNG00015021745) #10	ENSMMNG00015021741	DNMBP (ENSMMNG00015021703) #11	ABCC2 (ENSMMNG00015021666) #12	CUTC (ENSMMNG00015021646) #13	COX15 (ENSMMNG00015021631) #14	ENTPD7 (ENSMMNG00015021616) #15	SLC25A28 (ENSMMNG00015021609) #16	ENSMMNG00015021602	NKX2-3 (ENSMMNG00015021590) #17	ENSMMNG00015021579	GOT1 (ENSMMNG00015021565) #18	CNNM1 (ENSMMNG00015021551) #19	HPSE2 (ENSMMNG00015021406) #22	HPS1 (ENSMMNG00015021292) #23	PYROXD2 (ENSMMNG00015021259) #25	LOXL4 (ENSMMNG00015021234) #26	R3HCC1L (ENSMMNG00015021199) #27	CRTAC1 (ENSMMNG00015021140) #29	GOLGA7B (ENSMMNG00015021091) #30	ENSMMNG00015021065	SFRP5 (ENSMMNG00015021053) #31	ZFYVE27 (ENSMMNG00015020926) #32	MARVELD1 (ENSMMNG00015020866) #33	AVPI1 (ENSMMNG00015020853) #34	PI4K2A (ENSMMNG00015020825) #36	MORN4 (ENSMMNG00015020795) #35	HOGA1 (ENSMMNG00015020756)	ANKRD2 (ENSMMNG00015020671) #37
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	65	ENSDLEG00000016781	CPN1 (ENSDLEG00000016805) #10	DNMBP (ENSDLEG00000016839) #11	ENSDLEG00000016877	ABCC2 (ENSDLEG00000017009) #12	CUTC (ENSDLEG00000018572) #13	COX15 (ENSDLEG00000018589) #14	ENTPD7 (ENSDLEG00000018599) #15	SLC25A28 (ENSDLEG00000018615) #16	ENSDLEG00000018620	NKX2-3 (ENSDLEG00000018624) #17	ENSDLEG00000018627	GOT1 (ENSDLEG00000018631) #18	CNNM1 (ENSDLEG00000018642) #19	ENSDLEG00000018658 #22	HPSE2 (ENSDLEG00000018666) #22	HPS1 (ENSDLEG00000018728) #23	PYROXD2 (ENSDLEG00000019317) #25	LOXL4 (ENSDLEG00000019384) #26	R3HCC1L (ENSDLEG00000019396) #27	CRTAC1 (ENSDLEG00000015410) #29	GOLGA7B (ENSDLEG00000015445) #30	ENSDLEG00000015480	SFRP5 (ENSDLEG00000015488) #31	ZFYVE27 (ENSDLEG00000015495) #32	MARVELD1 (ENSDLEG00000015515) #33	AVPI1 (ENSDLEG00000015521) #34	PI4K2A (ENSDLEG00000015532) #36	MORN4 (ENSDLEG00000015545) #35	HOGA1 (ENSDLEG00000015555)	ANKRD2 (ENSDLEG00000015568) #37
Beluga whale	MODERN SPECIES	65	ENSDLEG00000016762	ENSDLEG00000016781	CPN1 (ENSDLEG00000016805) #10	DNMBP (ENSDLEG00000016839) #11	ENSDLEG00000016877	ABCC2 (ENSDLEG00000017009) #12	CUTC (ENSDLEG00000018572) #13	COX15 (ENSDLEG00000018589) #14	ENTPD7 (ENSDLEG00000018599) #15	SLC25A28 (ENSDLEG00000018615) #16	ENSDLEG00000018620	NKX2-3 (ENSDLEG00000018624) #17	ENSDLEG00000018627	GOT1 (ENSDLEG00000018631) #18	CNNM1 (ENSDLEG00000018642) #19	ENSDLEG00000018658 #22	HPSE2 (ENSDLEG00000018666) #22	HPS1 (ENSDLEG00000018728) #23	PYROXD2 (ENSDLEG00000019317) #25	LOXL4 (ENSDLEG00000019384) #26	R3HCC1L (ENSDLEG00000019396) #27	CRTAC1 (ENSDLEG00000015410) #29	GOLGA7B (ENSDLEG00000015445) #30	ENSDLEG00000015480	SFRP5 (ENSDLEG00000015488) #31	ZFYVE27 (ENSDLEG00000015495) #32	MARVELD1 (ENSDLEG00000015515) #33	AVPI1 (ENSDLEG00000015521) #34	PI4K2A (ENSDLEG00000015532) #36	MORN4 (ENSDLEG00000015545) #35	HOGA1 (ENSDLEG00000015555)
Pecora	ANCESTRAL SPECIES	12	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Yarkand deer	MODERN SPECIES	6	ENSCHYG00000006832	CHUK (ENSCHYG00000006784) #8	ERLIN1 (ENSCHYG00000006724) #9	ENSCHYG00000006656	CPN1 (ENSCHYG00000006610) #10	DNMBP (ENSCHYG00000006445) #11	ABCC2 (ENSCHYG00000006324) #12	ENSCHYG00000006294	CUTC (ENSCHYG00000006242) #13	COX15 (ENSCHYG00000006179) #14	ENTPD7 (ENSCHYG00000006056) #15	SLC25A28 (ENSCHYG00000006008) #16	NKX2-3 (ENSCHYG00000005991) #17	ENSCHYG00000005946 #18	CNNM1 (ENSCHYG00000005721) #19	HPSE2 (ENSCHYG00000005569) #22	HPS1 (ENSCHYG00000005361) #23	PYROXD2 (ENSCHYG00000005123) #25	ENSCHYG00000005075	LOXL4 (ENSCHYG00000005041) #26	R3HCC1L (ENSCHYG00000004994) #27	CRTAC1 (ENSCHYG00000004903) #29	ENSCHYG00000004880	SFRP5 (ENSCHYG00000004868) #31	ZFYVE27 (ENSCHYG00000004712) #32	MARVELD1 (ENSCHYG00000004459) #33	AVPI1 (ENSCHYG00000004424) #34	PI4K2A (ENSCHYG00000021371) #36	MORN4 (ENSCHYG00000021303) #35	HOGA1 (ENSCHYG00000021197)	ANKRD2 (ENSCHYG00000020741) #37
Percora_a	ANCESTRAL SPECIES	14	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Bovidae	ANCESTRAL SPECIES	24	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Caprinae	ANCESTRAL SPECIES	19	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00390000015820	ENSGT00940000153956.b #37
Goat	MODERN SPECIES	18	CWF19L1 (ENSCHIG00000022368)	CHUK (ENSCHIG00000017053) #8	ERLIN1 (ENSCHIG00000021174) #9	ENSCHIG00000024200	ENSCHIG00000002220	CPN1 (ENSCHIG00000006379) #10	DNMBP (ENSCHIG00000012404) #11	ABCC2 (ENSCHIG00000023862) #12	CUTC (ENSCHIG00000003099) #13	COX15 (ENSCHIG00000020850) #14	ENTPD7 (ENSCHIG00000010544) #15	SLC25A28 (ENSCHIG00000012444) #16	NKX2-3 (ENSCHIG00000017672) #17	GOT1 (ENSCHIG00000024327) #18	CNNM1 (ENSCHIG00000021440) #19	HPSE2 (ENSCHIG00000007017) #22	HPS1 (ENSCHIG00000015465) #23	PYROXD2 (ENSCHIG00000012022) #25	LOXL4 (ENSCHIG00000023220) #26	R3HCC1L (ENSCHIG00000015278) #27	CRTAC1 (ENSCHIG00000021520) #29	GOLGA7B (ENSCHIG00000020686) #30	SFRP5 (ENSCHIG00000024678) #31	ZFYVE27 (ENSCHIG00000015749) #32	MARVELD1 (ENSCHIG00000019321) #33	AVPI1 (ENSCHIG00000014474) #34	PI4K2A (ENSCHIG00000019481) #36	MORN4 (ENSCHIG00000015248) #35	HOGA1 (ENSCHIG00000018410)	C10orf62 (ENSCHIG00000025583)	ANKRD2 (ENSCHIG00000011698) #37
Rambouillet Sheep	MODERN SPECIES	14	CWF19L1 (ENSOARG00020023576)	CHUK (ENSOARG00020023504) #8	ERLIN1 (ENSOARG00020023462) #9	ENSOARG00020023442	ENSOARG00020023363	CPN1 (ENSOARG00020023321) #10	DNMBP (ENSOARG00020023124) #11	ABCC2 (ENSOARG00020023009) #12	CUTC (ENSOARG00020022982) #13	COX15 (ENSOARG00020022953) #14	ENTPD7 (ENSOARG00020022923) #15	SLC25A28 (ENSOARG00020022896) #16	NKX2-3 (ENSOARG00020022879) #17	GOT1 (ENSOARG00020022840) #18	CNNM1 (ENSOARG00020022788) #19	HPSE2 (ENSOARG00020022137) #22	HPS1 (ENSOARG00020021926) #23	PYROXD2 (ENSOARG00020021749) #25	LOXL4 (ENSOARG00020021636) #26	CRTAC1 (ENSOARG00020020932) #29	GOLGA7B (ENSOARG00020020851) #30	SFRP5 (ENSOARG00020020728) #31	ZFYVE27 (ENSOARG00020019673) #32	ENSOARG00020019627	MARVELD1 (ENSOARG00020019607) #33	AVPI1 (ENSOARG00020019577) #34	PI4K2A (ENSOARG00020019502) #36	MORN4 (ENSOARG00020019435) #35	HOGA1 (ENSOARG00020019351)	ANKRD2 (ENSOARG00020018993) #37	UBTD1 (ENSOARG00020018950)
Bovinae	ANCESTRAL SPECIES	22	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Bos	ANCESTRAL SPECIES	23	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741.d #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Bos_a	ANCESTRAL SPECIES	17	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741.d #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Domestic yak	MODERN SPECIES	17	CWF19L1 (ENSBGRG00000023954)	CHUK (ENSBGRG00000023732) #8	ERLIN1 (ENSBGRG00000023679) #9	ENSBGRG00000023587	CPN1 (ENSBGRG00000023508) #10	DNMBP (ENSBGRG00000023150) #11	ABCC2 (ENSBGRG00000022859) #12	CUTC (ENSBGRG00000022756) #13	COX15 (ENSBGRG00000022480) #14	ENTPD7 (ENSBGRG00000022394) #15	SLC25A28 (ENSBGRG00000022344) #16	NKX2-3 (ENSBGRG00000022317) #17	GOT1 (ENSBGRG00000022227) #18	CNNM1 (ENSBGRG00000021985) #19	ENSBGRG00000021941	HPSE2 (ENSBGRG00000021306) #22	HPS1 (ENSBGRG00000020843) #23	PYROXD2 (ENSBGRG00000020702) #25	LOXL4 (ENSBGRG00000020559) #26	ENSBGRG00000020536	ENSBGRG00000020483 #27	CRTAC1 (ENSBGRG00000020315) #29	GOLGA7B (ENSBGRG00000020042) #30	SFRP5 (ENSBGRG00000019974) #31	ZFYVE27 (ENSBGRG00000019044) #32	MARVELD1 (ENSBGRG00000018953) #33	AVPI1 (ENSBGRG00000018935) #34	PI4K2A (ENSBGRG00000018890) #36	MORN4 (ENSBGRG00000018805) #35	C10orf62 (ENSBGRG00000018744)	HOGA1 (ENSBGRG00000018609)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1253																HPSE2 (ENSBMUG00000020169) #22	HPS1 (ENSBMUG00000020153) #23	PYROXD2 (ENSBMUG00000020130) #25	LOXL4 (ENSBMUG00000020121) #26	R3HCC1L (ENSBMUG00000020105) #27	CRTAC1 (ENSBMUG00000020041) #29	GOLGA7B (ENSBMUG00000019984) #30	SFRP5 (ENSBMUG00000019980) #31	ZFYVE27 (ENSBMUG00000019816) #32	AVPI1 (ENSBMUG00000019579) #34	PI4K2A (ENSBMUG00000019561) #36	MORN4 (ENSBMUG00000019532) #35	HOGA1 (ENSBMUG00000019517)	ANKRD2 (ENSBMUG00000019496) #37	UBTD1 (ENSBMUG00000019460)	MMS19 (ENSBMUG00000019370)
Wild yak	MODERN SPECIES	459	BLOC1S2 (ENSBMUG00000017651)	CWF19L1 (ENSBMUG00000017670)	CHUK (ENSBMUG00000017775) #8	ERLIN1 (ENSBMUG00000017806) #9	ENSBMUG00000017924	CPN1 (ENSBMUG00000018051) #10	DNMBP (ENSBMUG00000018089) #11	ABCC2 (ENSBMUG00000018169) #12	CUTC (ENSBMUG00000018195) #13	COX15 (ENSBMUG00000018209) #14	ENTPD7 (ENSBMUG00000018228) #15	SLC25A28 (ENSBMUG00000018239) #16	NKX2-3 (ENSBMUG00000018255) #17	GOT1 (ENSBMUG00000018263) #18	CNNM1 (ENSBMUG00000018287) #19	ENSBMUG00000018304 #22
Bos_b	ANCESTRAL SPECIES	23	ENSGT00390000005889.j	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741.d #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Hybrid Bos Indicus	MODERN SPECIES	18	ENSBIXG00005011167	CWF19L1 (ENSBIXG00005001023)	CHUK (ENSBIXG00005011090) #8	ERLIN1 (ENSBIXG00005001006) #9	ENSBIXG00005010965	CPN1 (ENSBIXG00005000570) #10	DNMBP (ENSBIXG00005010920) #11	ABCC2 (ENSBIXG00005000623) #12	CUTC (ENSBIXG00005000919) #13	COX15 (ENSBIXG00005010651) #14	ENTPD7 (ENSBIXG00005010635) #15	SLC25A28 (ENSBIXG00005010613) #16	NKX2-3 (ENSBIXG00005010599) #17	GOT1 (ENSBIXG00005000692) #18	CNNM1 (ENSBIXG00005006993) #19	HPSE2 (ENSBIXG00005010419) #22	HPS1 (ENSBIXG00005000811) #23	PYROXD2 (ENSBIXG00005010212) #25	LOXL4 (ENSBIXG00005010186) #26	R3HCC1L (ENSBIXG00005010153) #27	ENSBIXG00005010106	CRTAC1 (ENSBIXG00005010075) #29	ZFYVE27 (ENSBIXG00005000645) #32	SFRP5 (ENSBIXG00005009770) #31	PI4K2A (ENSBIXG00005006986) #36	AVPI1 (ENSBIXG00005009706) #34	MORN4 (ENSBIXG00005000550) #35	HOGA1 (ENSBIXG00005009628)	ANKRD2 (ENSBIXG00005009522) #37	MMS19 (ENSBIXG00005009397)	ZDHHC16 (ENSBIXG00005009297)
Cow	DUPLICATION
Cow	MODERN SPECIES	18	CHUK (ENSBTAG00000007591) #8	ERLIN1 (ENSBTAG00000007588) #9	CYP2C23 (ENSBTAG00000023939)	CPN1 (ENSBTAG00000023941) #10	DNMBP (ENSBTAG00000008939) #11	ABCC2 (ENSBTAG00000008936) #12	CUTC (ENSBTAG00000002971) #13	COX15 (ENSBTAG00000045703) #14	ENTPD7 (ENSBTAG00000047077) #15	SLC25A28 (ENSBTAG00000012107) #16	NKX2-3 (ENSBTAG00000021397) #17	GOT1 (ENSBTAG00000011960) #18	CNNM1 (ENSBTAG00000011956) #19	ENSBTAG00000050951 #22	ENSBTAG00000052639	HPSE2 (ENSBTAG00000054120) #22	HPS1 (ENSBTAG00000014314) #23	PYROXD2 (ENSBTAG00000014313) #25	LOXL4 (ENSBTAG00000020895) #26	R3HCC1L (ENSBTAG00000021856) #27	CRTAC1 (ENSBTAG00000008102) #29	GOLGA7B (ENSBTAG00000008100) #30	SFRP5 (ENSBTAG00000018566) #31	ZFYVE27 (ENSBTAG00000018564) #32	MARVELD1 (ENSBTAG00000013478) #33	AVPI1 (ENSBTAG00000023947) #34	PI4K2A (ENSBTAG00000002010) #36	MORN4 (ENSBTAG00000011137) #35	HOGA1 (ENSBTAG00000012721)	ANKRD2 (ENSBTAG00000012720) #37	UBTD1 (ENSBTAG00000012719)
Cow	MODERN SPECIES	18	BLOC1S2 (ENSBTAG00000010739)	CWF19L1 (ENSBTAG00000007594)	CHUK (ENSBTAG00000007591) #8	ERLIN1 (ENSBTAG00000007588) #9	CYP2C23 (ENSBTAG00000023939)	CPN1 (ENSBTAG00000023941) #10	DNMBP (ENSBTAG00000008939) #11	ABCC2 (ENSBTAG00000008936) #12	CUTC (ENSBTAG00000002971) #13	COX15 (ENSBTAG00000045703) #14	ENTPD7 (ENSBTAG00000047077) #15	SLC25A28 (ENSBTAG00000012107) #16	NKX2-3 (ENSBTAG00000021397) #17	GOT1 (ENSBTAG00000011960) #18	CNNM1 (ENSBTAG00000011956) #19	ENSBTAG00000050951 #22	ENSBTAG00000052639	HPSE2 (ENSBTAG00000054120) #22	HPS1 (ENSBTAG00000014314) #23	PYROXD2 (ENSBTAG00000014313) #25	LOXL4 (ENSBTAG00000020895) #26	R3HCC1L (ENSBTAG00000021856) #27	CRTAC1 (ENSBTAG00000008102) #29	GOLGA7B (ENSBTAG00000008100) #30	SFRP5 (ENSBTAG00000018566) #31	ZFYVE27 (ENSBTAG00000018564) #32	MARVELD1 (ENSBTAG00000013478) #33	AVPI1 (ENSBTAG00000023947) #34	PI4K2A (ENSBTAG00000002010) #36	MORN4 (ENSBTAG00000011137) #35	HOGA1 (ENSBTAG00000012721)
American bison	DUPLICATION
American bison	MODERN SPECIES	2808																HPSE2 (ENSBBBG00000005487) #22	HPS1 (ENSBBBG00000005498) #23	PYROXD2 (ENSBBBG00000020340) #25	LOXL4 (ENSBBBG00000020358) #26	ENSBBBG00000020378 #27	CRTAC1 (ENSBBBG00000000665) #29	GOLGA7B (ENSBBBG00000000641) #30	SFRP5 (ENSBBBG00000000636) #31	ZFYVE27 (ENSBBBG00000020489) #32	MARVELD1 (ENSBBBG00000005536) #33	AVPI1 (ENSBBBG00000007237) #34	PI4K2A (ENSBBBG00000020520) #36	MORN4 (ENSBBBG00000020533) #35	HOGA1 (ENSBBBG00000005549)	ANKRD2 (ENSBBBG00000020599) #37	UBTD1 (ENSBBBG00000020612)
American bison	MODERN SPECIES	3316	BLOC1S2 (ENSBBBG00000006915)	CWF19L1 (ENSBBBG00000020870)	CHUK (ENSBBBG00000005609) #8	ERLIN1 (ENSBBBG00000020806) #9	ENSBBBG00000020764	CPN1 (ENSBBBG00000020710) #10	DNMBP (ENSBBBG00000008616) #11	ABCC2 (ENSBBBG00000020631) #12	CUTC (ENSBBBG00000020570) #13	COX15 (ENSBBBG00000020431) #14	ENTPD7 (ENSBBBG00000007516) #15	SLC25A28 (ENSBBBG00000000522) #16	NKX2-3 (ENSBBBG00000000532) #17	GOT1 (ENSBBBG00000000537) #18	CNNM1 (ENSBBBG00000000548) #19	ENSBBBG00000000558 #22
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1163																HPSE2 (ENSMMSG00000019779) #22	HPS1 (ENSMMSG00000019803) #23	PYROXD2 (ENSMMSG00000019950) #25	LOXL4 (ENSMMSG00000020001) #26	R3HCC1L (ENSMMSG00000020036) #27	CRTAC1 (ENSMMSG00000020091) #29	GOLGA7B (ENSMMSG00000020355) #30	SFRP5 (ENSMMSG00000020379) #31	ZFYVE27 (ENSMMSG00000020430) #32	MARVELD1 (ENSMMSG00000020644) #33	AVPI1 (ENSMMSG00000020653) #34	PI4K2A (ENSMMSG00000020675) #36	MORN4 (ENSMMSG00000020708) #35	HOGA1 (ENSMMSG00000020768)	ANKRD2 (ENSMMSG00000020830) #37	UBTD1 (ENSMMSG00000020979)
Siberian musk deer	MODERN SPECIES	1162	ENSMMSG00000018776	CWF19L1 (ENSMMSG00000018813)	ENSMMSG00000018864 #8	ERLIN1 (ENSMMSG00000018996) #9	ENSMMSG00000019076	CPN1 (ENSMMSG00000019165) #10	DNMBP (ENSMMSG00000019235) #11	ABCC2 (ENSMMSG00000019363) #12	CUTC (ENSMMSG00000019530) #13	COX15 (ENSMMSG00000019557) #14	ENTPD7 (ENSMMSG00000019589) #15	SLC25A28 (ENSMMSG00000019614) #16	NKX2-3 (ENSMMSG00000019646) #17	GOT1 (ENSMMSG00000019669) #18	CNNM1 (ENSMMSG00000019701) #19	ENSMMSG00000019749 #22
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Tenrec	MODERN SPECIES	1984																HPSE2 (ENSETEG00000015421) #22	HPS1 (ENSETEG00000015419) #23	ENSETEG00000015417 #25
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00390000005889	ENSGT00940000156000	ENSGT00950000182937.A.a #8	ENSGT00390000014666.b #9	ENSGT00940000163402	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Hyrax	MODERN SPECIES	5619																HPSE2 (ENSPCAG00000000332) #22
Elephant	MODERN SPECIES	3	BLOC1S2 (ENSLAFG00000014979)	CWF19L1 (ENSLAFG00000014975)	CHUK (ENSLAFG00000014964) #8	ERLIN1 (ENSLAFG00000020642) #9	ENSLAFG00000021818	CPN1 (ENSLAFG00000009332) #10	DNMBP (ENSLAFG00000030951) #11	ABCC2 (ENSLAFG00000014342) #12	CUTC (ENSLAFG00000005938) #13	COX15 (ENSLAFG00000005937) #14	ENTPD7 (ENSLAFG00000005933) #15	SLC25A28 (ENSLAFG00000005821) #16	NKX2-3 (ENSLAFG00000014664) #17	GOT1 (ENSLAFG00000000163) #18	CNNM1 (ENSLAFG00000000165) #19	HPSE2 (ENSLAFG00000015101) #22	HPS1 (ENSLAFG00000000437) #23	PYROXD2 (ENSLAFG00000000434) #25	LOXL4 (ENSLAFG00000001421) #26	R3HCC1L (ENSLAFG00000001419) #27	CRTAC1 (ENSLAFG00000003369) #29	GOLGA7B (ENSLAFG00000003367) #30	SFRP5 (ENSLAFG00000013658) #31	ZFYVE27 (ENSLAFG00000013655) #32	AVPI1 (ENSLAFG00000022434) #34	PI4K2A (ENSLAFG00000010665) #36	MORN4 (ENSLAFG00000022767) #35	HOGA1 (ENSLAFG00000010660)	ANKRD2 (ENSLAFG00000010658) #37	UBTD1 (ENSLAFG00000010656)	MMS19 (ENSLAFG00000009246)
Xenarthra	ANCESTRAL SPECIES	23																ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Sloth	MODERN SPECIES	4554																HPSE2 (ENSCHOG00000007245) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1432										CNNM1 (ENSDNOG00000002187) #19	ENSDNOG00000049425	ENSDNOG00000035562	ENSDNOG00000039642	ENSDNOG00000041261 #22	ENSDNOG00000041908	HPSE2 (ENSDNOG00000015912) #22	HPS1 (ENSDNOG00000011491) #23	PYROXD2 (ENSDNOG00000011460) #25	LOXL4 (ENSDNOG00000043804) #26	R3HCC1L (ENSDNOG00000043313) #27	CRTAC1 (ENSDNOG00000007658) #29	GOLGA7B (ENSDNOG00000033712) #30	SFRP5 (ENSDNOG00000032287) #31	ZFYVE27 (ENSDNOG00000019918) #32	MARVELD1 (ENSDNOG00000008327) #33	AVPI1 (ENSDNOG00000044043) #34	PI4K2A (ENSDNOG00000017724) #36	MORN4 (ENSDNOG00000032778) #35	C10orf62 (ENSDNOG00000036266)	HOGA1 (ENSDNOG00000001243)	ANKRD2 (ENSDNOG00000001240) #37
Armadillo	MODERN SPECIES	1432												CNNM1 (ENSDNOG00000002187) #19	ENSDNOG00000049425	ENSDNOG00000035562	ENSDNOG00000039642	ENSDNOG00000041261 #22	ENSDNOG00000041908	HPSE2 (ENSDNOG00000015912) #22	HPS1 (ENSDNOG00000011491) #23	PYROXD2 (ENSDNOG00000011460) #25	LOXL4 (ENSDNOG00000043804) #26	R3HCC1L (ENSDNOG00000043313) #27	CRTAC1 (ENSDNOG00000007658) #29	GOLGA7B (ENSDNOG00000033712) #30	SFRP5 (ENSDNOG00000032287) #31	ZFYVE27 (ENSDNOG00000019918) #32	MARVELD1 (ENSDNOG00000008327) #33	AVPI1 (ENSDNOG00000044043) #34	PI4K2A (ENSDNOG00000017724) #36	MORN4 (ENSDNOG00000032778) #35	C10orf62 (ENSDNOG00000036266)
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000163402.b.b	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT01000000220768	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820	ENSGT00530000063604.A
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000163402.b.b	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT01020000233779	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT01000000220768	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00390000015820
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000008667	ENSSHAG00000009424	ENSSHAG00000022709	ENSSHAG00000030063	ENSSHAG00000000782	ENSSHAG00000010622 #10	DNMBP (ENSSHAG00000011335) #11	ENSSHAG00000011765 #12	CUTC (ENSSHAG00000021965) #13	COX15 (ENSSHAG00000012385) #14	ENTPD7 (ENSSHAG00000012533) #15	SLC25A28 (ENSSHAG00000012792) #16	NKX2-3 (ENSSHAG00000013355) #17	GOT1 (ENSSHAG00000013995) #18	CNNM1 (ENSSHAG00000014170) #19	ENSSHAG00000014646 #22	ENSSHAG00000022698 #22	HPS1 (ENSSHAG00000016600) #23	PYROXD2 (ENSSHAG00000016671) #25	ENSSHAG00000023437	LOXL4 (ENSSHAG00000017119) #26	ENSSHAG00000026322 #27	CRTAC1 (ENSSHAG00000017544) #29	GOLGA7B (ENSSHAG00000028342) #30	SFRP5 (ENSSHAG00000017924) #31	ZFYVE27 (ENSSHAG00000017946) #32	MARVELD1 (ENSSHAG00000030010) #33	AVPI1 (ENSSHAG00000021027) #34	PI4K2A (ENSSHAG00000018035) #36	MORN4 (ENSSHAG00000025545) #35	ENSSHAG00000031417
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000009424	ENSSHAG00000022709	ENSSHAG00000030063	ENSSHAG00000000782	ENSSHAG00000010622 #10	DNMBP (ENSSHAG00000011335) #11	ENSSHAG00000011765 #12	CUTC (ENSSHAG00000021965) #13	COX15 (ENSSHAG00000012385) #14	ENTPD7 (ENSSHAG00000012533) #15	SLC25A28 (ENSSHAG00000012792) #16	NKX2-3 (ENSSHAG00000013355) #17	GOT1 (ENSSHAG00000013995) #18	CNNM1 (ENSSHAG00000014170) #19	ENSSHAG00000014646 #22	ENSSHAG00000022698 #22	HPS1 (ENSSHAG00000016600) #23	PYROXD2 (ENSSHAG00000016671) #25	ENSSHAG00000023437	LOXL4 (ENSSHAG00000017119) #26	ENSSHAG00000026322 #27	CRTAC1 (ENSSHAG00000017544) #29	GOLGA7B (ENSSHAG00000028342) #30	SFRP5 (ENSSHAG00000017924) #31	ZFYVE27 (ENSSHAG00000017946) #32	MARVELD1 (ENSSHAG00000030010) #33	AVPI1 (ENSSHAG00000021027) #34	PI4K2A (ENSSHAG00000018035) #36	MORN4 (ENSSHAG00000025545) #35	ENSSHAG00000031417	HOGA1 (ENSSHAG00000023284)
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT01020000233779	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT01000000220768	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A
Wallaby	MODERN SPECIES	8173																ENSMEUG00000003490 #22
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b	ENSGT00390000000786	ENSGT00940000170293	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000161741 #12	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT01020000233779	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT01000000220768	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	39	SHLD2 (ENSVURG00010016292)	ENSVURG00010016326	ENSVURG00010016343	ADIRF (ENSVURG00010016356)	ENSVURG00010016364	CPN1 (ENSVURG00010016373) #10	DNMBP (ENSVURG00010016403) #11	ENSVURG00010016480 #12	CUTC (ENSVURG00010016519) #13	COX15 (ENSVURG00010016544) #14	ENTPD7 (ENSVURG00010016570) #15	SLC25A28 (ENSVURG00010016582) #16	NKX2-3 (ENSVURG00010016593) #17	GOT1 (ENSVURG00010016606) #18	CNNM1 (ENSVURG00010016618) #19	ENSVURG00010016643 #22	ENSVURG00010016657 #22	HPS1 (ENSVURG00010016677) #23	PYROXD2 (ENSVURG00010016717) #25	ENSVURG00010016743	LOXL4 (ENSVURG00010016749) #26	ENSVURG00010016755 #27	CRTAC1 (ENSVURG00010016779) #29	GOLGA7B (ENSVURG00010016801) #30	SFRP5 (ENSVURG00010016815) #31	ZFYVE27 (ENSVURG00010016841) #32	MARVELD1 (ENSVURG00010016976) #33	AVPI1 (ENSVURG00010016980) #34	PI4K2A (ENSVURG00010016985) #36	MORN4 (ENSVURG00010016996) #35	HOGA1 (ENSVURG00010017009)
Common wonbat	MODERN SPECIES	39	ENSVURG00010016326	ENSVURG00010016343	ADIRF (ENSVURG00010016356)	ENSVURG00010016364	CPN1 (ENSVURG00010016373) #10	DNMBP (ENSVURG00010016403) #11	ENSVURG00010016480 #12	CUTC (ENSVURG00010016519) #13	COX15 (ENSVURG00010016544) #14	ENTPD7 (ENSVURG00010016570) #15	SLC25A28 (ENSVURG00010016582) #16	NKX2-3 (ENSVURG00010016593) #17	GOT1 (ENSVURG00010016606) #18	CNNM1 (ENSVURG00010016618) #19	ENSVURG00010016643 #22	ENSVURG00010016657 #22	HPS1 (ENSVURG00010016677) #23	PYROXD2 (ENSVURG00010016717) #25	ENSVURG00010016743	LOXL4 (ENSVURG00010016749) #26	ENSVURG00010016755 #27	CRTAC1 (ENSVURG00010016779) #29	GOLGA7B (ENSVURG00010016801) #30	SFRP5 (ENSVURG00010016815) #31	ZFYVE27 (ENSVURG00010016841) #32	MARVELD1 (ENSVURG00010016976) #33	AVPI1 (ENSVURG00010016980) #34	PI4K2A (ENSVURG00010016985) #36	MORN4 (ENSVURG00010016996) #35	HOGA1 (ENSVURG00010017009)	ANKRD2 (ENSVURG00010017022) #37
koala	DUPLICATION
koala	MODERN SPECIES	65	ENSPCIG00000028408	SHLD2 (ENSPCIG00000028413)	ENSPCIG00000007968	ENSPCIG00000007973	ENSPCIG00000037354	ENSPCIG00000007979 #10	DNMBP (ENSPCIG00000014360) #11	ENSPCIG00000033203 #12	CUTC (ENSPCIG00000028280) #13	COX15 (ENSPCIG00000028278) #14	ENTPD7 (ENSPCIG00000028276) #15	SLC25A28 (ENSPCIG00000028275) #16	NKX2-3 (ENSPCIG00000032194) #17	GOT1 (ENSPCIG00000028267) #18	CNNM1 (ENSPCIG00000028265) #19	ENSPCIG00000028264 #22	ENSPCIG00000035242 #22	HPS1 (ENSPCIG00000021283) #23	PYROXD2 (ENSPCIG00000021262) #25	ENSPCIG00000021258	LOXL4 (ENSPCIG00000021256) #26	ENSPCIG00000035873 #27	ENSPCIG00000021252	CRTAC1 (ENSPCIG00000021225) #29	GOLGA7B (ENSPCIG00000036348) #30	SFRP5 (ENSPCIG00000034993) #31	ZFYVE27 (ENSPCIG00000002380) #32	MARVELD1 (ENSPCIG00000002363) #33	AVPI1 (ENSPCIG00000033102) #34	PI4K2A (ENSPCIG00000002342) #36	MORN4 (ENSPCIG00000002324) #35
koala	MODERN SPECIES	65	SHLD2 (ENSPCIG00000028413)	ENSPCIG00000007968	ENSPCIG00000007973	ENSPCIG00000037354	ENSPCIG00000007979 #10	DNMBP (ENSPCIG00000014360) #11	ENSPCIG00000033203 #12	CUTC (ENSPCIG00000028280) #13	COX15 (ENSPCIG00000028278) #14	ENTPD7 (ENSPCIG00000028276) #15	SLC25A28 (ENSPCIG00000028275) #16	NKX2-3 (ENSPCIG00000032194) #17	GOT1 (ENSPCIG00000028267) #18	CNNM1 (ENSPCIG00000028265) #19	ENSPCIG00000028264 #22	ENSPCIG00000035242 #22	HPS1 (ENSPCIG00000021283) #23	PYROXD2 (ENSPCIG00000021262) #25	ENSPCIG00000021258	LOXL4 (ENSPCIG00000021256) #26	ENSPCIG00000035873 #27	ENSPCIG00000021252	CRTAC1 (ENSPCIG00000021225) #29	GOLGA7B (ENSPCIG00000036348) #30	SFRP5 (ENSPCIG00000034993) #31	ZFYVE27 (ENSPCIG00000002380) #32	MARVELD1 (ENSPCIG00000002363) #33	AVPI1 (ENSPCIG00000033102) #34	PI4K2A (ENSPCIG00000002342) #36	MORN4 (ENSPCIG00000002324) #35	HOGA1 (ENSPCIG00000002307)
Opossum	DUPLICATION
Opossum	MODERN SPECIES		ENSMODG00000002716	SHLD2 (ENSMODG00000002724)	ENSMODG00000002756	ENSMODG00000002759	ENSMODG00000002772	CPN1 (ENSMODG00000003251) #10	DNMBP (ENSMODG00000003273) #11	ENSMODG00000003389 #12	CUTC (ENSMODG00000048417) #13	COX15 (ENSMODG00000003487) #14	ENTPD7 (ENSMODG00000003505) #15	SLC25A28 (ENSMODG00000003519) #16	NKX2-3 (ENSMODG00000043640) #17	GOT1 (ENSMODG00000003558) #18	CNNM1 (ENSMODG00000003576) #19	ENSMODG00000028699 #22	ENSMODG00000003602 #22	HPS1 (ENSMODG00000003664) #23	ENSMODG00000003692 #25	LOXL4 (ENSMODG00000003726) #26	ENSMODG00000039006 #27	ENSMODG00000003748 #27	ENSMODG00000050795	CRTAC1 (ENSMODG00000003807) #29	GOLGA7B (ENSMODG00000028192) #30	SFRP5 (ENSMODG00000003859) #31	ZFYVE27 (ENSMODG00000003907) #32	MARVELD1 (ENSMODG00000003911) #33	ENSMODG00000003917 #34	PI4K2A (ENSMODG00000003931) #36	MORN4 (ENSMODG00000003942) #35
Opossum	MODERN SPECIES		SHLD2 (ENSMODG00000002724)	ENSMODG00000002756	ENSMODG00000002759	ENSMODG00000002772	CPN1 (ENSMODG00000003251) #10	DNMBP (ENSMODG00000003273) #11	ENSMODG00000003389 #12	CUTC (ENSMODG00000048417) #13	COX15 (ENSMODG00000003487) #14	ENTPD7 (ENSMODG00000003505) #15	SLC25A28 (ENSMODG00000003519) #16	NKX2-3 (ENSMODG00000043640) #17	GOT1 (ENSMODG00000003558) #18	CNNM1 (ENSMODG00000003576) #19	ENSMODG00000028699 #22	ENSMODG00000003602 #22	HPS1 (ENSMODG00000003664) #23	ENSMODG00000003692 #25	LOXL4 (ENSMODG00000003726) #26	ENSMODG00000039006 #27	ENSMODG00000003748 #27	ENSMODG00000050795	CRTAC1 (ENSMODG00000003807) #29	GOLGA7B (ENSMODG00000028192) #30	SFRP5 (ENSMODG00000003859) #31	ZFYVE27 (ENSMODG00000003907) #32	MARVELD1 (ENSMODG00000003911) #33	ENSMODG00000003917 #34	PI4K2A (ENSMODG00000003931) #36	MORN4 (ENSMODG00000003942) #35	HOGA1 (ENSMODG00000003963)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	14	PDLIM1 (ENSOANG00000005138)	SORBS1 (ENSOANG00000005136)	ALDH18A1 (ENSOANG00000007159)	TCTN3 (ENSOANG00000019944)	ENTPD1 (ENSOANG00000037893)	CPN1 (ENSOANG00000043726) #10	DNMBP (ENSOANG00000044119) #11	ENSOANG00000005819 #12	CUTC (ENSOANG00000011762) #13	COX15 (ENSOANG00000010125) #14	ENTPD7 (ENSOANG00000041336) #15	SLC25A28 (ENSOANG00000006335) #16	NKX2-3 (ENSOANG00000042302) #17	GOT1 (ENSOANG00000006868) #18	CNNM1 (ENSOANG00000044842) #19	ENSOANG00000047769 #22	ENSOANG00000039488 #22	HPS1 (ENSOANG00000003472) #23	PYROXD2 (ENSOANG00000003471) #25	ENSOANG00000019825	LOXL4 (ENSOANG00000000515) #26	ENSOANG00000037303 #27	ENSOANG00000045727	CRTAC1 (ENSOANG00000010461) #29	GOLGA7B (ENSOANG00000047632) #30	SFRP5 (ENSOANG00000043234) #31	ZFYVE27 (ENSOANG00000006007) #32	MARVELD1 (ENSOANG00000009255) #33	AVPI1 (ENSOANG00000040881) #34	PI4K2A (ENSOANG00000043690) #36	MORN4 (ENSOANG00000042957) #35
Platypus	MODERN SPECIES	14	SORBS1 (ENSOANG00000005136)	ALDH18A1 (ENSOANG00000007159)	TCTN3 (ENSOANG00000019944)	ENTPD1 (ENSOANG00000037893)	CPN1 (ENSOANG00000043726) #10	DNMBP (ENSOANG00000044119) #11	ENSOANG00000005819 #12	CUTC (ENSOANG00000011762) #13	COX15 (ENSOANG00000010125) #14	ENTPD7 (ENSOANG00000041336) #15	SLC25A28 (ENSOANG00000006335) #16	NKX2-3 (ENSOANG00000042302) #17	GOT1 (ENSOANG00000006868) #18	CNNM1 (ENSOANG00000044842) #19	ENSOANG00000047769 #22	ENSOANG00000039488 #22	HPS1 (ENSOANG00000003472) #23	PYROXD2 (ENSOANG00000003471) #25	ENSOANG00000019825	LOXL4 (ENSOANG00000000515) #26	ENSOANG00000037303 #27	ENSOANG00000045727	CRTAC1 (ENSOANG00000010461) #29	GOLGA7B (ENSOANG00000047632) #30	SFRP5 (ENSOANG00000043234) #31	ZFYVE27 (ENSOANG00000006007) #32	MARVELD1 (ENSOANG00000009255) #33	AVPI1 (ENSOANG00000040881) #34	PI4K2A (ENSOANG00000043690) #36	MORN4 (ENSOANG00000042957) #35	HOGA1 (ENSOANG00000013061)
Sauria	ANCESTRAL SPECIES	8	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Episquamata	ANCESTRAL SPECIES	2	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Laterata	ANCESTRAL SPECIES		ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Common wall lizard	MODERN SPECIES	13	ALDH18A1 (ENSPMRG00000003436)	TCTN3 (ENSPMRG00000003398)	ENTPD1 (ENSPMRG00000003388)	CPN1 (ENSPMRG00000003351) #10	DNMBP (ENSPMRG00000003333) #11	ENSPMRG00000003312	CUTC (ENSPMRG00000003293) #13	COX15 (ENSPMRG00000003281) #14	ATP6V0E2 (ENSPMRG00000003272)	ENTPD7 (ENSPMRG00000003262) #15	SLC25A28 (ENSPMRG00000003256) #16	NKX2-3 (ENSPMRG00000003244) #17	ENSPMRG00000003236	ENSPMRG00000003228 #18	CNNM1 (ENSPMRG00000003219) #19	HPSE2 (ENSPMRG00000003207) #22	HPS1 (ENSPMRG00000003174) #23	ENSPMRG00000003158	PYROXD2 (ENSPMRG00000003147) #25	LOXL4 (ENSPMRG00000003119) #26	R3HCC1L (ENSPMRG00000003100) #27	CRTAC1 (ENSPMRG00000003081) #29	GOLGA7B (ENSPMRG00000003064) #30	SFRP5 (ENSPMRG00000003057) #31	ZFYVE27 (ENSPMRG00000003032) #32	MARVELD1 (ENSPMRG00000003018) #33	AVPI1 (ENSPMRG00000003011) #34	PI4K2A (ENSPMRG00000002999) #36	MORN4 (ENSPMRG00000002981) #35	HOGA1 (ENSPMRG00000002970)	ANKRD2 (ENSPMRG00000002965) #37
Argentine black and white tegu	MODERN SPECIES	19	ALDH18A1 (ENSSMRG00000021956)	TCTN3 (ENSSMRG00000021955)	ENTPD1 (ENSSMRG00000021954)	CPN1 (ENSSMRG00000021953) #10	DNMBP (ENSSMRG00000021711) #11	ENSSMRG00000021710	CUTC (ENSSMRG00000021709) #13	COX15 (ENSSMRG00000021708) #14	ATP6V0E2 (ENSSMRG00000021707)	ENTPD7 (ENSSMRG00000021706) #15	SLC25A28 (ENSSMRG00000021705) #16	NKX2-3 (ENSSMRG00000021704) #17	ENSSMRG00000021703	GOT1 (ENSSMRG00000021702) #18	CNNM1 (ENSSMRG00000021701) #19	HPSE2 (ENSSMRG00000021700) #22	HPS1 (ENSSMRG00000021699) #23	PYROXD2 (ENSSMRG00000021698) #25	LOXL4 (ENSSMRG00000021697) #26	R3HCC1L (ENSSMRG00000021696) #27	CRTAC1 (ENSSMRG00000021695) #29	GOLGA7B (ENSSMRG00000021693) #30	SFRP5 (ENSSMRG00000021692) #31	ZFYVE27 (ENSSMRG00000021691) #32	MARVELD1 (ENSSMRG00000021690) #33	AVPI1 (ENSSMRG00000021689) #34	PI4K2A (ENSSMRG00000021688) #36	MORN4 (ENSSMRG00000021687) #35	HOGA1 (ENSSMRG00000021686)	ANKRD2 (ENSSMRG00000021685) #37	UBTD1 (ENSSMRG00000021684)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	3	DUSP28 (ENSNNAG00000007679)	ALDH18A1 (ENSNNAG00000005661)	TCTN3 (ENSNNAG00000005494)	ENTPD1 (ENSNNAG00000005470)	CPN1 (ENSNNAG00000005446) #10	DNMBP (ENSNNAG00000005362) #11	ENSNNAG00000004263	CUTC (ENSNNAG00000004119) #13	COX15 (ENSNNAG00000004090) #14	ATP6V0E2 (ENSNNAG00000004073)	ENTPD7 (ENSNNAG00000004035) #15	SLC25A28 (ENSNNAG00000004021) #16	NKX2-3 (ENSNNAG00000004007) #17	GOT1 (ENSNNAG00000003975) #18	CNNM1 (ENSNNAG00000003938) #19	ENSNNAG00000003927 #22	ENSNNAG00000003872 #22	HPS1 (ENSNNAG00000003839) #23	PYROXD2 (ENSNNAG00000003519) #25	ENSNNAG00000003322 #26	R3HCC1L (ENSNNAG00000003273) #27	CRTAC1 (ENSNNAG00000003254) #29	GOLGA7B (ENSNNAG00000003241) #30	SFRP5 (ENSNNAG00000003224) #31	ZFYVE27 (ENSNNAG00000003209) #32	MARVELD1 (ENSNNAG00000003201) #33	ENSNNAG00000003189 #34	PI4K2A (ENSNNAG00000003173) #36	MORN4 (ENSNNAG00000003159) #35	HOGA1 (ENSNNAG00000003149)	ANKRD2 (ENSNNAG00000003134) #37
Indian cobra	MODERN SPECIES	3	ALDH18A1 (ENSNNAG00000005661)	TCTN3 (ENSNNAG00000005494)	ENTPD1 (ENSNNAG00000005470)	CPN1 (ENSNNAG00000005446) #10	DNMBP (ENSNNAG00000005362) #11	ENSNNAG00000004263	CUTC (ENSNNAG00000004119) #13	COX15 (ENSNNAG00000004090) #14	ATP6V0E2 (ENSNNAG00000004073)	ENTPD7 (ENSNNAG00000004035) #15	SLC25A28 (ENSNNAG00000004021) #16	NKX2-3 (ENSNNAG00000004007) #17	GOT1 (ENSNNAG00000003975) #18	CNNM1 (ENSNNAG00000003938) #19	ENSNNAG00000003927 #22	ENSNNAG00000003872 #22	HPS1 (ENSNNAG00000003839) #23	PYROXD2 (ENSNNAG00000003519) #25	ENSNNAG00000003322 #26	R3HCC1L (ENSNNAG00000003273) #27	CRTAC1 (ENSNNAG00000003254) #29	GOLGA7B (ENSNNAG00000003241) #30	SFRP5 (ENSNNAG00000003224) #31	ZFYVE27 (ENSNNAG00000003209) #32	MARVELD1 (ENSNNAG00000003201) #33	ENSNNAG00000003189 #34	PI4K2A (ENSNNAG00000003173) #36	MORN4 (ENSNNAG00000003159) #35	HOGA1 (ENSNNAG00000003149)	ANKRD2 (ENSNNAG00000003134) #37	UBTD1 (ENSNNAG00000003131)
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000164861	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000161528	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000164861	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Mainland tiger snake	MODERN SPECIES		DUSP28 (ENSNSUG00000010886)	ALDH18A1 (ENSNSUG00000010719)	TCTN3 (ENSNSUG00000010698)	ENTPD1 (ENSNSUG00000010696)	CPN1 (ENSNSUG00000010695) #10	DNMBP (ENSNSUG00000010693) #11	ENSNSUG00000007693	CUTC (ENSNSUG00000007671) #13	COX15 (ENSNSUG00000007670) #14	ATP6V0E2 (ENSNSUG00000007665)	ENTPD7 (ENSNSUG00000007636) #15	SLC25A28 (ENSNSUG00000007635) #16	NKX2-3 (ENSNSUG00000007632) #17	GOT1 (ENSNSUG00000007630) #18	CNNM1 (ENSNSUG00000007490) #19	HPSE2 (ENSNSUG00000007487) #22	HPS1 (ENSNSUG00000007471) #23	ENSNSUG00000007463	LOXL4 (ENSNSUG00000007419) #26	R3HCC1L (ENSNSUG00000007415) #27	CRTAC1 (ENSNSUG00000007402) #29	GOLGA7B (ENSNSUG00000007400) #30	SFRP5 (ENSNSUG00000007389) #31	ZFYVE27 (ENSNSUG00000007388) #32	MARVELD1 (ENSNSUG00000007387) #33	AVPI1 (ENSNSUG00000007386) #34	PI4K2A (ENSNSUG00000007385) #36	MORN4 (ENSNSUG00000007384) #35	HOGA1 (ENSNSUG00000007381)	ANKRD2 (ENSNSUG00000007333) #37	UBTD1 (ENSNSUG00000007330)
Eastern brown snake	MODERN SPECIES	16	ENSPTXG00000018041	DUSP28 (ENSPTXG00000018040)	ALDH18A1 (ENSPTXG00000018039)	TCTN3 (ENSPTXG00000018038)	ENTPD1 (ENSPTXG00000018037)	CPN1 (ENSPTXG00000018036) #10	ENSPTXG00000018035 #11	DNMBP (ENSPTXG00000018034) #11	ENSPTXG00000013275	CUTC (ENSPTXG00000013237) #13	ATP6V0E2 (ENSPTXG00000013236)	ENTPD7 (ENSPTXG00000018586) #15	SLC25A28 (ENSPTXG00000018585) #16	GOT1 (ENSPTXG00000018584) #18	CNNM1 (ENSPTXG00000018566) #19	HPSE2 (ENSPTXG00000018561) #22	HPS1 (ENSPTXG00000018557) #23	ENSPTXG00000018513	LOXL4 (ENSPTXG00000018477) #26	R3HCC1L (ENSPTXG00000018476) #27	CRTAC1 (ENSPTXG00000018473) #29	GOLGA7B (ENSPTXG00000018471) #30	SFRP5 (ENSPTXG00000018469) #31	ZFYVE27 (ENSPTXG00000018467) #32	MARVELD1 (ENSPTXG00000018465) #33	AVPI1 (ENSPTXG00000018464) #34	PI4K2A (ENSPTXG00000018462) #36	MORN4 (ENSPTXG00000018460) #35	HOGA1 (ENSPTXG00000018458)	ANKRD2 (ENSPTXG00000018448) #37	UBTD1 (ENSPTXG00000018447)
Lizard	MODERN SPECIES	2	DUSP28 (ENSACAG00000045538)	ALDH18A1 (ENSACAG00000004480)	ENSACAG00000004453	ENTPD1 (ENSACAG00000004301)	ENSACAG00000004193 #10	DNMBP (ENSACAG00000004166) #11	ENSACAG00000003972	ENSACAG00000003797 #13	COX15 (ENSACAG00000003767) #14	ENSACAG00000026586	ENTPD7 (ENSACAG00000003702) #15	SLC25A28 (ENSACAG00000003687) #16	NKX2-3 (ENSACAG00000034886) #17	GOT1 (ENSACAG00000003583) #18	CNNM1 (ENSACAG00000003524) #19	HPSE2 (ENSACAG00000003429) #22	ENSACAG00000039564	HPS1 (ENSACAG00000002534) #23	ENSACAG00000042996	PYROXD2 (ENSACAG00000003367) #25	LOXL4 (ENSACAG00000003263) #26	R3HCC1L (ENSACAG00000003217) #27	CRTAC1 (ENSACAG00000003141) #29	GOLGA7B (ENSACAG00000028949) #30	SFRP5 (ENSACAG00000003105) #31	ZFYVE27 (ENSACAG00000003048) #32	MARVELD1 (ENSACAG00000003046) #33	AVPI1 (ENSACAG00000027657) #34	PI4K2A (ENSACAG00000002964) #36	MORN4 (ENSACAG00000043755) #35	HOGA1 (ENSACAG00000002892)
tuatara	MODERN SPECIES	1056						CPN1 (ENSSPUG00000014172) #10	DNMBP (ENSSPUG00000014122) #11	ENSSPUG00000013623	CUTC (ENSSPUG00000013469) #13	COX15 (ENSSPUG00000013395) #14	ENSSPUG00000013368	SLC25A28 (ENSSPUG00000013238) #16	NKX2-3 (ENSSPUG00000013168) #17	GOT1 (ENSSPUG00000013156) #18	CNNM1 (ENSSPUG00000013124) #19	HPSE2 (ENSSPUG00000013059) #22	HPS1 (ENSSPUG00000013028) #23	ENSSPUG00000012961 #27	CRTAC1 (ENSSPUG00000012944) #29	GOLGA7B (ENSSPUG00000012927) #30	SFRP5 (ENSSPUG00000012919) #31	ZFYVE27 (ENSSPUG00000012905) #32	MARVELD1 (ENSSPUG00000012901) #33	AVPI1 (ENSSPUG00000012899) #34	PI4K2A (ENSSPUG00000012888) #36	MORN4 (ENSSPUG00000012878) #35	HOGA1 (ENSSPUG00000012791)	ANKRD2 (ENSSPUG00000012723) #37	UBTD1 (ENSSPUG00000012702)	MMS19 (ENSSPUG00000012382)	ZDHHC16 (ENSSPUG00000012276)
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Archosauria	ANCESTRAL SPECIES	7	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Aves	ANCESTRAL SPECIES	6	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Neognathae	ANCESTRAL SPECIES	7	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00960000193282	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Great tit	MODERN SPECIES	26	POLR3A (ENSPMJG00000003830)	DLG5 (ENSPMJG00000003837)	ENSPMJG00000003870	ENTPD1 (ENSPMJG00000003877)	CPN1 (ENSPMJG00000003883) #10	DNMBP (ENSPMJG00000003884) #11	ENSPMJG00000003890	CUTC (ENSPMJG00000003894) #13	COX15 (ENSPMJG00000003900) #14	SLC25A28 (ENSPMJG00000003901) #16	ENTPD7 (ENSPMJG00000003905) #15	NKX2-3 (ENSPMJG00000003959) #17	GOT1 (ENSPMJG00000003964) #18	ENSPMJG00000003969	CNNM1 (ENSPMJG00000003971) #19	HPSE2 (ENSPMJG00000003974) #22	HPS1 (ENSPMJG00000003977) #23	PYROXD2 (ENSPMJG00000003978) #25	LOXL4 (ENSPMJG00000003995) #26	R3HCC1L (ENSPMJG00000003997) #27	CRTAC1 (ENSPMJG00000004009) #29	GOLGA7B (ENSPMJG00000004029) #30	SFRP5 (ENSPMJG00000004031) #31	ZFYVE27 (ENSPMJG00000004057) #32	MARVELD1 (ENSPMJG00000004062) #33	ENSPMJG00000004065	PI4K2A (ENSPMJG00000004066) #36	MORN4 (ENSPMJG00000004071) #35	HOGA1 (ENSPMJG00000004076)	ANKRD2 (ENSPMJG00000004080) #37	UBTD1 (ENSPMJG00000004084)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Flycatcher	MODERN SPECIES	25	ENSFALG00000008006	ADGRA1 (ENSFALG00000008023)	ENSFALG00000008026	ENSFALG00000008031	ENSFALG00000008040 #10	DNMBP (ENSFALG00000008054) #11	ENSFALG00000008090	ENSFALG00000008185 #13	ENSFALG00000008257 #18	ENSFALG00000026409 #14	ENSFALG00000023969	ENTPD7 (ENSFALG00000008221) #15	ENSFALG00000008240 #16	ENSFALG00000025597	CNNM1 (ENSFALG00000008277) #19	HPSE2 (ENSFALG00000008281) #22	HPS1 (ENSFALG00000008293) #23	PYROXD2 (ENSFALG00000008323) #25	LOXL4 (ENSFALG00000008346) #26	R3HCC1L (ENSFALG00000008355) #27	CRTAC1 (ENSFALG00000008358) #29	GOLGA7B (ENSFALG00000008361) #30	SFRP5 (ENSFALG00000008364) #31	ZFYVE27 (ENSFALG00000008374) #32	ENSFALG00000025983	PI4K2A (ENSFALG00000028831) #36	MORN4 (ENSFALG00000008422) #35	HOGA1 (ENSFALG00000024169)	ANKRD2 (ENSFALG00000008427) #37	UBTD1 (ENSFALG00000008438)	MMS19 (ENSFALG00000008442)
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Common canary	MODERN SPECIES	7	ADGRA1 (ENSSCAG00000016784)	ENSSCAG00000016775	ENTPD1 (ENSSCAG00000016768)	CPN1 (ENSSCAG00000016764) #10	DNMBP (ENSSCAG00000016756) #11	ENSSCAG00000016744	CUTC (ENSSCAG00000016738) #13	COX15 (ENSSCAG00000016735) #14	ATP6V0E2 (ENSSCAG00000016732)	ENTPD7 (ENSSCAG00000016728) #15	SLC25A28 (ENSSCAG00000016727) #16	ENSSCAG00000016725	GOT1 (ENSSCAG00000016723) #18	CNNM1 (ENSSCAG00000016720) #19	ENSSCAG00000016717	HPSE2 (ENSSCAG00000016715) #22	HPS1 (ENSSCAG00000016709) #23	PYROXD2 (ENSSCAG00000016694) #25	LOXL4 (ENSSCAG00000016687) #26	ENSSCAG00000016682 #27	CRTAC1 (ENSSCAG00000016674) #29	GOLGA7B (ENSSCAG00000016669) #30	SFRP5 (ENSSCAG00000016665) #31	ZFYVE27 (ENSSCAG00000016659) #32	MORN4 (ENSSCAG00000016656) #35	HOGA1 (ENSSCAG00000016653)	ANKRD2 (ENSSCAG00000016650) #37	UBTD1 (ENSSCAG00000016648)	ZDHHC16 (ENSSCAG00000016614)	EXOSC1 (ENSSCAG00000016610)	ENSSCAG00000016605
Zebra finch	MODERN SPECIES	28	ADGRA1 (ENSTGUG00000009101)	ENSTGUG00000009131	ENTPD1 (ENSTGUG00000009148)	CPN1 (ENSTGUG00000009169) #10	DNMBP (ENSTGUG00000009180) #11	ENSTGUG00000009186	CUTC (ENSTGUG00000009354) #13	COX15 (ENSTGUG00000009368) #14	ATP6V0E2 (ENSTGUG00000009386)	ENTPD7 (ENSTGUG00000009398) #15	SLC25A28 (ENSTGUG00000009410) #16	NKX2-3 (ENSTGUG00000009415) #17	GOT1 (ENSTGUG00000009418) #18	ENSTGUG00000027229	CNNM1 (ENSTGUG00000009430) #19	HPSE2 (ENSTGUG00000009462) #22	PYROXD2 (ENSTGUG00000009444) #25	LOXL4 (ENSTGUG00000009546) #26	R3HCC1L (ENSTGUG00000009574) #27	CRTAC1 (ENSTGUG00000009582) #29	GOLGA7B (ENSTGUG00000026467) #30	SFRP5 (ENSTGUG00000023601) #31	ZFYVE27 (ENSTGUG00000009586) #32	AVPI1 (ENSTGUG00000025747) #34	PI4K2A (ENSTGUG00000009606) #36	MORN4 (ENSTGUG00000009616) #35	HOGA1 (ENSTGUG00000009624)	ANKRD2 (ENSTGUG00000022547) #37	UBTD1 (ENSTGUG00000009637)	MMS19 (ENSTGUG00000009642)	ZDHHC16 (ENSTGUG00000009668)
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Golden eagle	MODERN SPECIES	2	ADGRA1 (ENSACCG00020002556)	ENSACCG00020002536	ENTPD1 (ENSACCG00020002506)	CPN1 (ENSACCG00020002478) #10	DNMBP (ENSACCG00020002424) #11	ENSACCG00020002084	CUTC (ENSACCG00020001448) #13	COX15 (ENSACCG00020001426) #14	ATP6V0E2 (ENSACCG00020001403)	ENTPD7 (ENSACCG00020001384) #15	SLC25A28 (ENSACCG00020001364) #16	NKX2-3 (ENSACCG00020001343) #17	ENSACCG00020001328	GOT1 (ENSACCG00020001316) #18	CNNM1 (ENSACCG00020001275) #19	HPSE2 (ENSACCG00020001239) #22	HPS1 (ENSACCG00020001192) #23	PYROXD2 (ENSACCG00020001152) #25	LOXL4 (ENSACCG00020001067) #26	R3HCC1L (ENSACCG00020000919) #27	CRTAC1 (ENSACCG00020000882) #29	GOLGA7B (ENSACCG00020000849) #30	SFRP5 (ENSACCG00020000820) #31	ZFYVE27 (ENSACCG00020000789) #32	AVPI1 (ENSACCG00020000729) #34	PI4K2A (ENSACCG00020000698) #36	MORN4 (ENSACCG00020000670) #35	HOGA1 (ENSACCG00020000638)	ANKRD2 (ENSACCG00020000618) #37	UBTD1 (ENSACCG00020000581)	MMS19 (ENSACCG00020000544)
Kakapo	MODERN SPECIES	22	ENSSHBG00005020698	ADGRA1 (ENSSHBG00005020702)	ENSSHBG00005020708	ENTPD1 (ENSSHBG00005020713)	CPN1 (ENSSHBG00005020718) #10	DNMBP (ENSSHBG00005020724) #11	ENSSHBG00005020733	CUTC (ENSSHBG00005020740) #13	COX15 (ENSSHBG00005020758) #14	ATP6V0E2 (ENSSHBG00005020762)	ENTPD7 (ENSSHBG00005020766) #15	SLC25A28 (ENSSHBG00005020773) #16	NKX2-3 (ENSSHBG00005020777) #17	GOT1 (ENSSHBG00005020787) #18	CNNM1 (ENSSHBG00005020808) #19	HPSE2 (ENSSHBG00005020827) #22	HPS1 (ENSSHBG00005020839) #23	PYROXD2 (ENSSHBG00005020847) #25	LOXL4 (ENSSHBG00005020859) #26	R3HCC1L (ENSSHBG00005020866) #27	CRTAC1 (ENSSHBG00005020869) #29	GOLGA7B (ENSSHBG00005020876) #30	SFRP5 (ENSSHBG00005020880) #31	ZFYVE27 (ENSSHBG00005020886) #32	MARVELD1 (ENSSHBG00005020893) #33	AVPI1 (ENSSHBG00005020896) #34	PI4K2A (ENSSHBG00005020904) #36	HOGA1 (ENSSHBG00005020914)	ANKRD2 (ENSSHBG00005020924) #37	UBTD1 (ENSSHBG00005020933)	MMS19 (ENSSHBG00005020943)
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00940000177979	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000164861	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Japanese quail	MODERN SPECIES	24	ADGRA1 (ENSCJPG00005019517)	ENSCJPG00005019518	ENTPD1 (ENSCJPG00005019520)	CPN1 (ENSCJPG00005019521) #10	DNMBP (ENSCJPG00005019522) #11	ENSCJPG00005019523	COX15 (ENSCJPG00005019524) #14	CUTC (ENSCJPG00005019525) #13	ATP6V0E2 (ENSCJPG00005019526)	ENTPD7 (ENSCJPG00005019527) #15	SLC25A28 (ENSCJPG00005019528) #16	NKX2-3 (ENSCJPG00005019530) #17	GOT1 (ENSCJPG00005019532) #18	ENSCJPG00005019533	CNNM1 (ENSCJPG00005019534) #19	HPSE2 (ENSCJPG00005019535) #22	HPS1 (ENSCJPG00005019536) #23	ENSCJPG00005019537	LOXL4 (ENSCJPG00005019538) #26	ENSCJPG00005019540 #27	CRTAC1 (ENSCJPG00005019542) #29	GOLGA7B (ENSCJPG00005019543) #30	SFRP5 (ENSCJPG00005019544) #31	ZFYVE27 (ENSCJPG00005019545) #32	MARVELD1 (ENSCJPG00005019546) #33	ENSCJPG00005019547	PI4K2A (ENSCJPG00005019548) #36	MORN4 (ENSCJPG00005019551) #35	HOGA1 (ENSCJPG00005019552)	ANKRD2 (ENSCJPG00005019553) #37	UBTD1 (ENSCJPG00005019554)
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000164861	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Turkey	MODERN SPECIES	28	ENSMGAG00000009303	ENSMGAG00000021605	ADGRA1 (ENSMGAG00000009318)	ENSMGAG00000009328	ENSMGAG00000009343	ENSMGAG00000009366 #10	DNMBP (ENSMGAG00000009389) #11	ENSMGAG00000009405	ENSMGAG00000009482 #13	COX15 (ENSMGAG00000009501) #14	ENSMGAG00000020994	SLC25A28 (ENSMGAG00000019966) #16	GOT1 (ENSMGAG00000009531) #18	ENSMGAG00000022276	CNNM1 (ENSMGAG00000009551) #19	HPSE2 (ENSMGAG00000009567) #22	HPS1 (ENSMGAG00000009581) #23	ENSMGAG00000009576	LOXL4 (ENSMGAG00000009627) #26	R3HCC1L (ENSMGAG00000009654) #27	CRTAC1 (ENSMGAG00000009664) #29	GOLGA7B (ENSMGAG00000009694) #30	SFRP5 (ENSMGAG00000009698) #31	ZFYVE27 (ENSMGAG00000009699) #32	PI4K2A (ENSMGAG00000009723) #36	MORN4 (ENSMGAG00000009733) #35	HOGA1 (ENSMGAG00000009750)	ANKRD2 (ENSMGAG00000009758) #37	UBTD1 (ENSMGAG00000020222)	MMS19 (ENSMGAG00000009774)	ZDHHC16 (ENSMGAG00000009803)
Chicken	MODERN SPECIES	35	ADGRA1 (ENSGALG00010021966)	ENSGALG00010021994	ENTPD1 (ENSGALG00010022100)	CPN1 (ENSGALG00010022154) #10	DNMBP (ENSGALG00010022200) #11	ENSGALG00010022211	CUTC (ENSGALG00010022221) #13	COX15 (ENSGALG00010022234) #14	ENTPD7 (ENSGALG00010022244) #15	SLC25A28 (ENSGALG00010022250) #16	NKX2-3 (ENSGALG00010018311) #17	ENSGALG00010018318	GOT1 (ENSGALG00010018323) #18	ENSGALG00010018328	CNNM1 (ENSGALG00010018350) #19	HPSE2 (ENSGALG00010018365) #22	HPS1 (ENSGALG00010018374) #23	PYROXD2 (ENSGALG00010018430) #26	R3HCC1L (ENSGALG00010017790) #27	CRTAC1 (ENSGALG00010023163) #29	GOLGA7B (ENSGALG00010017891) #30	SFRP5 (ENSGALG00010017808) #31	ZFYVE27 (ENSGALG00010020595) #32	MARVELD1 (ENSGALG00010022840) #33	AVPI1 (ENSGALG00010020609) #34	PI4K2A (ENSGALG00010020616) #36	MORN4 (ENSGALG00010020626) #35	HOGA1 (ENSGALG00010020633)	ANKRD2 (ENSGALG00010020642) #37	UBTD1 (ENSGALG00010020667)	MMS19 (ENSGALG00010020673)
Anatidae	ANCESTRAL SPECIES	4	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00950000183082.b.b.b #18	ENSGT00940000177979	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00390000010434.b #36	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032
Pink-footed goose	MODERN SPECIES	11	ADGRA1 (ENSABRG00000005791)	ENSABRG00000005753	ENTPD1 (ENSABRG00000005680)	CPN1 (ENSABRG00000005662) #10	DNMBP (ENSABRG00000005624) #11	ENSABRG00000002986	CUTC (ENSABRG00000002672) #13	COX15 (ENSABRG00000002294) #14	ATP6V0E2 (ENSABRG00000002230)	ENTPD7 (ENSABRG00000002225) #15	SLC25A28 (ENSABRG00000002210) #16	NKX2-3 (ENSABRG00000002204) #17	ENSABRG00000002196	GOT1 (ENSABRG00000000737) #18	CNNM1 (ENSABRG00000000684) #19	HPSE2 (ENSABRG00000008559) #22	HPS1 (ENSABRG00000008515) #23	PYROXD2 (ENSABRG00000008449) #25	LOXL4 (ENSABRG00000008428) #26	R3HCC1L (ENSABRG00000008410) #27	CRTAC1 (ENSABRG00000008392) #29	GOLGA7B (ENSABRG00000008376) #30	SFRP5 (ENSABRG00000008364) #31	ZFYVE27 (ENSABRG00000008327) #32	MARVELD1 (ENSABRG00000008311) #33	PI4K2A (ENSABRG00000008151) #36	HOGA1 (ENSABRG00000008109)	ANKRD2 (ENSABRG00000008091) #37	UBTD1 (ENSABRG00000008082)	MMS19 (ENSABRG00000008035)	ZDHHC16 (ENSABRG00000008020)
Duck	MODERN SPECIES	24	DNTT (ENSAPLG00000012429)	ENSAPLG00000018699	ENSAPLG00000024228	ENSAPLG00000017553	KNDC1 (ENSAPLG00000012166)	ENSAPLG00000012029	ENSAPLG00000012001	ENTPD1 (ENSAPLG00000011301)	CPN1 (ENSAPLG00000011182) #10	DNMBP (ENSAPLG00000010732) #11	ENSAPLG00000008620	CUTC (ENSAPLG00000029466) #13	GOT1 (ENSAPLG00000008121) #18	ENSAPLG00000023058	CNNM1 (ENSAPLG00000007945) #19	HPSE2 (ENSAPLG00000027024) #22	ENSAPLG00000019744	CRTAC1 (ENSAPLG00000011099) #29	GOLGA7B (ENSAPLG00000018711) #30	SFRP5 (ENSAPLG00000021384) #31	ZFYVE27 (ENSAPLG00000028815) #32	ENSAPLG00000015404	ZDHHC16 (ENSAPLG00000012896)	SLIT1 (ENSAPLG00000013620)	ARHGAP19 (ENSAPLG00000014166)	RRP12 (ENSAPLG00000014387)	LCOR (ENSAPLG00000013561)	ENSAPLG00000019156	ENSAPLG00000028566	ENSAPLG00000012284	HPS6 (ENSAPLG00000012202)
African ostrich	MODERN SPECIES	720	ENSSCUG00000016850	KNDC1 (ENSSCUG00000016841)	ADGRA1 (ENSSCUG00000016835)	ENSSCUG00000016833	ENTPD1 (ENSSCUG00000016826)	CPN1 (ENSSCUG00000016820) #10	DNMBP (ENSSCUG00000016813) #11	ENSSCUG00000016802	CUTC (ENSSCUG00000016780) #13	COX15 (ENSSCUG00000016774) #14	ENTPD7 (ENSSCUG00000016769) #15	SLC25A28 (ENSSCUG00000016765) #16	ENSSCUG00000016763	GOT1 (ENSSCUG00000016759) #18	ENSSCUG00000016758 #19	HPSE2 (ENSSCUG00000016749) #22
Australian saltwater crocodile	MODERN SPECIES	68	BTAF1 (ENSCPRG00005013956)	ENSCPRG00005013876	ENSCPRG00005013875	ENSCPRG00005013869	ENSCPRG00005013866	CCNJ (ENSCPRG00005013862)	ZNF518A (ENSCPRG00005013859)	BLNK (ENSCPRG00005013845)	DNTT (ENSCPRG00005013837)	ENSCPRG00005013820	ENSCPRG00005013814	KNDC1 (ENSCPRG00005013776)	ADGRA1 (ENSCPRG00005013764)	GOT1 (ENSCPRG00005013741) #18	ENSCPRG00005013735 #19	HPSE2 (ENSCPRG00005013713) #22	HPS1 (ENSCPRG00005013698) #23	LOXL4 (ENSCPRG00005013693) #26	ENSCPRG00005013691 #27	CRTAC1 (ENSCPRG00005013685) #29	SFRP5 (ENSCPRG00005013682) #31	GOLGA7B (ENSCPRG00005013674) #30	ZFYVE27 (ENSCPRG00005013662) #32	MARVELD1 (ENSCPRG00005013655) #33	PI4K2A (ENSCPRG00005013650) #36	MORN4 (ENSCPRG00005013645) #35	HOGA1 (ENSCPRG00005013640)	ANKRD2 (ENSCPRG00005013635) #37	EXOSC1 (ENSCPRG00005013566)	ZDHHC16 (ENSCPRG00005013550)	ENSCPRG00005013535
Cryptodira	ANCESTRAL SPECIES	6		ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a.c #22
Testudinidae	ANCESTRAL SPECIES	9			ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.c #22	ENSGT00390000004874.a.a.d #22	ENSGT00390000015298.f #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
Abingdon island giant tortoise	MODERN SPECIES	2461					ENSCABG00000001964	ENSCABG00000001916	ENSCABG00000001833	USP18 (ENSCABG00000001776)	ENSCABG00000001766	ENSCABG00000001764	PEX26 (ENSCABG00000001761)	ENSCABG00000001758	NKX2-3 (ENSCABG00000001757) #17	GOT1 (ENSCABG00000000614) #18	CNNM1 (ENSCABG00000000554) #19	ENSCABG00000000541 #22
Testudinoidea	ANCESTRAL SPECIES	2		ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.d #22	ENSGT00390000015298.f #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032
Emydidae	ANCESTRAL SPECIES	6		ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.d #22	ENSGT00390000015298.f #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2388	TCTN3 (ENSCPBG00000012391)	ENTPD1 (ENSCPBG00000012386)	CPN1 (ENSCPBG00000012381) #10	DNMBP (ENSCPBG00000012299) #11	ENSCPBG00000012273	CUTC (ENSCPBG00000012259) #13	COX15 (ENSCPBG00000012256) #14	ENTPD7 (ENSCPBG00000012247) #15	ATP6V0E2 (ENSCPBG00000012242)	SLC25A28 (ENSCPBG00000012244) #16	ENSCPBG00000012240	NKX2-3 (ENSCPBG00000012238) #17	GOT1 (ENSCPBG00000012232) #18	CNNM1 (ENSCPBG00000012222) #19	ENSCPBG00000012218 #22	ENSCPBG00000012214 #22	ENSCPBG00000012212 #23	ENSCPBG00000012208 #23	PYROXD2 (ENSCPBG00000012204) #25	LOXL4 (ENSCPBG00000012198) #26	ENSCPBG00000012195 #27	CRTAC1 (ENSCPBG00000012190) #29	GOLGA7B (ENSCPBG00000012188) #30	ZFYVE27 (ENSCPBG00000012184) #32	MARVELD1 (ENSCPBG00000012178) #33	AVPI1 (ENSCPBG00000012176) #34	PI4K2A (ENSCPBG00000012171) #36	MORN4 (ENSCPBG00000012166) #35	HOGA1 (ENSCPBG00000011974)	ANKRD2 (ENSCPBG00000011964) #37	UBTD1 (ENSCPBG00000011961)
painted turtle	MODERN SPECIES	2388	ALDH18A1 (ENSCPBG00000012393)	TCTN3 (ENSCPBG00000012391)	ENTPD1 (ENSCPBG00000012386)	CPN1 (ENSCPBG00000012381) #10	DNMBP (ENSCPBG00000012299) #11	ENSCPBG00000012273	CUTC (ENSCPBG00000012259) #13	COX15 (ENSCPBG00000012256) #14	ENTPD7 (ENSCPBG00000012247) #15	ATP6V0E2 (ENSCPBG00000012242)	SLC25A28 (ENSCPBG00000012244) #16	ENSCPBG00000012240	NKX2-3 (ENSCPBG00000012238) #17	GOT1 (ENSCPBG00000012232) #18	CNNM1 (ENSCPBG00000012222) #19	ENSCPBG00000012218 #22	ENSCPBG00000012214 #22	ENSCPBG00000012212 #23	ENSCPBG00000012208 #23	PYROXD2 (ENSCPBG00000012204) #25	LOXL4 (ENSCPBG00000012198) #26	ENSCPBG00000012195 #27	CRTAC1 (ENSCPBG00000012190) #29	GOLGA7B (ENSCPBG00000012188) #30	ZFYVE27 (ENSCPBG00000012184) #32	MARVELD1 (ENSCPBG00000012178) #33	AVPI1 (ENSCPBG00000012176) #34	PI4K2A (ENSCPBG00000012171) #36	MORN4 (ENSCPBG00000012166) #35	HOGA1 (ENSCPBG00000011974)	ANKRD2 (ENSCPBG00000011964) #37
Three-toed box turtle	MODERN SPECIES	39		ALDH18A1 (ENSTMTG00000006775)	TCTN3 (ENSTMTG00000006805)	ENTPD1 (ENSTMTG00000006868)	CPN1 (ENSTMTG00000000069) #10	DNMBP (ENSTMTG00000000118) #11	ENSTMTG00000000173	CUTC (ENSTMTG00000000254) #13	COX15 (ENSTMTG00000000300) #14	ATP6V0E2 (ENSTMTG00000000315)	ENTPD7 (ENSTMTG00000000338) #15	SLC25A28 (ENSTMTG00000000367) #16	NKX2-3 (ENSTMTG00000000388) #17	GOT1 (ENSTMTG00000000402) #18	CNNM1 (ENSTMTG00000000418) #19	HPSE2 (ENSTMTG00000000452) #22	HPS1 (ENSTMTG00000000563) #23	PYROXD2 (ENSTMTG00000000830) #25	ENSTMTG00000000900 #27	ZFYVE27 (ENSTMTG00000000937) #32	MARVELD1 (ENSTMTG00000001012) #33	AVPI1 (ENSTMTG00000001017) #34	PI4K2A (ENSTMTG00000001025) #36	ENSTMTG00000001035	MMS19 (ENSTMTG00000001309)	ZDHHC16 (ENSTMTG00000002566)	ARHGAP19 (ENSTMTG00000002583)	ENSTMTG00000002590	LCOR (ENSTMTG00000002602)	PPRC1 (ENSTMTG00000002608)	LDB1 (ENSTMTG00000002621)
Testudinidae	ANCESTRAL SPECIES	9		ENSGT00570000079101.a.a	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000162476	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a.c #22	ENSGT00390000004874.a.a.d #22	ENSGT00390000015298.f #23	ENSGT00390000011684 #25	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37	ENSGT00940000158630	ENSGT00390000015583	ENSGT00940000155032
Goode s thornscrub tortoise	MODERN SPECIES	21		TCTN3 (ENSGEVG00005002176)	ENSGEVG00005002315	ENTPD1 (ENSGEVG00005002324)	CPN1 (ENSGEVG00005002356) #10	DNMBP (ENSGEVG00005002430) #11	ENSGEVG00005002479	CUTC (ENSGEVG00005002589) #13	COX15 (ENSGEVG00005002611) #14	ATP6V0E2 (ENSGEVG00005002649)	ENTPD7 (ENSGEVG00005002666) #15	SLC25A28 (ENSGEVG00005002739) #16	NKX2-3 (ENSGEVG00005002751) #17	GOT1 (ENSGEVG00005002776) #18	CNNM1 (ENSGEVG00005002795) #19	HPSE2 (ENSGEVG00005002820) #22	HPS1 (ENSGEVG00005002869) #23	ENSGEVG00005002944 #25	ENSGEVG00005002965 #25	LOXL4 (ENSGEVG00005003041) #26	R3HCC1L (ENSGEVG00005003179) #27	ENSGEVG00005003202 #29	ENSGEVG00005003240 #30	ENSGEVG00005003246 #31	ZFYVE27 (ENSGEVG00005003269) #32	MARVELD1 (ENSGEVG00005003317) #33	AVPI1 (ENSGEVG00005003324) #34	PI4K2A (ENSGEVG00005003337) #36	MORN4 (ENSGEVG00005003350) #35	HOGA1 (ENSGEVG00005003381)	ENSGEVG00005003440 #37
Abingdon island giant tortoise	MODERN SPECIES	91																ENSCABG00000022998 #22	HPS1 (ENSCABG00000022999) #23	PYROXD2 (ENSCABG00000023000) #25
Anura	ANCESTRAL SPECIES	25			ENSGT00500000044903	ENSGT01100000263542.C	ENSGT00940000158235 #10	ENSGT00950000183088.a.b.a #11	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00390000011684 #25	ENSGT00940000161036.B	ENSGT00940000157042 #26	ENSGT00530000063711.b #27	ENSGT00390000013726 #29	ENSGT00390000000134.a #30	ENSGT00940000160608 #31	ENSGT00390000013298 #32	ENSGT00510000049375 #33	ENSGT00510000049872 #34	ENSGT00390000010434.b #36	ENSGT00730000111173 #35	ENSGT00530000063604.A	ENSGT00940000153956.b #37
Frog	MODERN SPECIES	7	entpd1 (ENSXETG00000003736)	cpn1 (ENSXETG00000003737) #10	dnmbp (ENSXETG00000003739) #11	abcc2 (ENSXETG00000003740)	cox15 (ENSXETG00000003745) #14	cutc (ENSXETG00000003744) #13	entpd7 (ENSXETG00000003746) #15	slc25a28 (ENSXETG00000035534) #16	nkx3-3 (ENSXETG00000018432)	nkx2-3 (ENSXETG00000036831) #17	ENSXETG00000043602	ENSXETG00000048822	got1 (ENSXETG00000018428) #18	ENSXETG00000043400	cnnm1 (ENSXETG00000018427) #19	hpse2 (ENSXETG00000018422) #22	hps1 (ENSXETG00000036836) #23	pyroxd2 (ENSXETG00000018402) #25	ENSXETG00000033896	loxl4 (ENSXETG00000015828) #26	r3hcc1l (ENSXETG00000038254) #27	ENSXETG00000042342	crtac1 (ENSXETG00000030508) #29	golga7b (ENSXETG00000039738) #30	sfrp5 (ENSXETG00000024699) #31	zfyve27 (ENSXETG00000013529) #32	ENSXETG00000043898	marveld1 (ENSXETG00000042369) #33	AVPI1 (ENSXETG00000036365) #34	pi4k2a (ENSXETG00000013516) #36	MORN4 (ENSXETG00000036245) #35
Leishan spiny toad	MODERN SPECIES	9	ENTPD1 (ENSLLEG00000016172)	CPN1 (ENSLLEG00000016076) #10	DNMBP (ENSLLEG00000015304) #11	ENSLLEG00000015069	CUTC (ENSLLEG00000024824) #13	COX15 (ENSLLEG00000024720) #14	ATP6V0E2 (ENSLLEG00000024672)	ENSLLEG00000024655	ENTPD7 (ENSLLEG00000024551) #15	SLC25A28 (ENSLLEG00000024415) #16	ENSLLEG00000024359	ENSLLEG00000024314	ENSLLEG00000024278 #17	GOT1 (ENSLLEG00000024001) #18	CNNM1 (ENSLLEG00000023809) #19	HPSE2 (ENSLLEG00000023742) #22	HPS1 (ENSLLEG00000023369) #23	ENSLLEG00000023225	LOXL4 (ENSLLEG00000023007) #26	R3HCC1L (ENSLLEG00000022943) #27	CRTAC1 (ENSLLEG00000021817) #29	SFRP5 (ENSLLEG00000021734) #31	GOLGA7B (ENSLLEG00000021577) #30	ENSLLEG00000021541	ENSLLEG00000021410 #32	ENSLLEG00000021381	ENSLLEG00000021312	ENSLLEG00000021261	MARVELD1 (ENSLLEG00000021232) #33	AVPI1 (ENSLLEG00000021116) #34	PI4K2A (ENSLLEG00000020965) #36
Coelacanth	MODERN SPECIES	807															ENSLACG00000000774 #19	HPSE2 (ENSLACG00000005439) #22	HPS1 (ENSLACG00000007601) #23	ENSLACG00000007947	PYROXD2 (ENSLACG00000008135) #25	zgc:123010 (ENSLACG00000009001)	LOXL4 (ENSLACG00000009846) #26	ENSLACG00000010599 #27	CRTAC1 (ENSLACG00000011568) #29	GOLGA7B (ENSLACG00000012851) #30	ENSLACG00000013565	SFRP5 (ENSLACG00000013721) #31
Actinopterygii	ANCESTRAL SPECIES	47	ENSGT00940000160608 #31	ENSGT00390000000134.a #30	ENSGT00390000013726 #29	ENSGT00530000063711.b #27	ENSGT00940000157042 #26	ENSGT00940000161036.B	ENSGT00940000164861	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00530000063604.A	ENSGT00730000111173 #35	ENSGT00940000175336	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14
Neopterygii	ANCESTRAL SPECIES	18	ENSGT00940000160608 #31	ENSGT00390000000134.a #30	ENSGT00390000013726 #29	ENSGT00530000063711.b #27	ENSGT00940000157042 #26	ENSGT00940000161036.B	ENSGT00940000164861	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #15	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556 #17	ENSGT00950000183082.b.b.b #18	ENSGT00940000157525 #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00530000063604.A	ENSGT00730000111173 #35	ENSGT00940000175336	ENSGT00940000162611.b	ENSGT00940000162611.a	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000157322.b.a	ENSGT00940000157331	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13
Osteoglossocephalai	ANCESTRAL SPECIES	213	ENSGT00970000193827	ENSGT00510000049375 #33	ENSGT00940000165757	ENSGT00390000013298 #32	ENSGT00940000160608 #31	ENSGT00390000000134.a #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37
Clupeocephala	ANCESTRAL SPECIES	91	ENSGT00970000193827	ENSGT00510000049375 #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b
Otomorpha	ANCESTRAL SPECIES	55	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #15	ENSGT00940000157556.a.a #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.b
Clupeiformes	ANCESTRAL SPECIES	146	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00940000162476	ENSGT00390000007125.a	ENSGT01100000263540.B.c #15	ENSGT00940000157556.a.a #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37
Denticle herring	MODERN SPECIES	11	ENSDCDG00000016695	zgc:171482 (ENSDCDG00000016698)	sfrp5 (ENSDCDG00000016702) #31	GOLGA7B (ENSDCDG00000016703) #30	CRTAC1 (ENSDCDG00000016710) #29	LOXL4 (ENSDCDG00000016723) #26	zgc:123010 (ENSDCDG00000017041)	pyroxd2 (ENSDCDG00000017052)	ENSDCDG00000017497	ENSDCDG00000017503	slc25a28 (ENSDCDG00000017509) #16	nkx3.3 (ENSDCDG00000017510)	ENSDCDG00000017511	got1 (ENSDCDG00000017514) ##18	CNNM1 (ENSDCDG00000017527) #19	HPSE2 (ENSDCDG00000017533) #22	hps1 (ENSDCDG00000017544) #23	st3gal7 (ENSDCDG00000017558)	ENSDCDG00000017570	FDXR (ENSDCDG00000017618)	ENSDCDG00000019083	unk (ENSDCDG00000019093)	TNNT1 (ENSDCDG00000019119)	ENSDCDG00000019207	ENSDCDG00000020798	st6galnac1.1 (ENSDCDG00000020799)	CASKIN2 (ENSDCDG00000020802)	nme2a (ENSDCDG00000020812)	ca10a (ENSDCDG00000020817)	ENSDCDG00000020863	mrpl27 (ENSDCDG00000020865)
Atlantic herring	MODERN SPECIES	4	marveld1 (ENSCHAG00000009102) #33	zgc:171482 (ENSCHAG00000009081)	sfrp5 (ENSCHAG00000009066) #31	GOLGA7B (ENSCHAG00000008889) #30	CRTAC1 (ENSCHAG00000008481) #29	LOXL4 (ENSCHAG00000008097) #26	zgc:123010 (ENSCHAG00000008078)	pyroxd2 (ENSCHAG00000007272)	slc25a28 (ENSCHAG00000007238) #16	ENSCHAG00000007211	got1 (ENSCHAG00000007159) ##18	nkx2.3 (ENSCHAG00000007059) #17	ENSCHAG00000007034	got1 (ENSCHAG00000006994) ##18	CNNM1 (ENSCHAG00000006990) #19	HPSE2 (ENSCHAG00000006872) #22	hps1 (ENSCHAG00000006731) #23	st3gal7 (ENSCHAG00000006723)	ENSCHAG00000006713 #37	ENSCHAG00000003211	ENSCHAG00000003045	ENSCHAG00000003010	ENSCHAG00000002982	smndc1 (ENSCHAG00000002928)	ADD3 (ENSCHAG00000002808)	ENSCHAG00000002762	ENSCHAG00000002359	ENSCHAG00000024852	ENSCHAG00000024846	ENSCHAG00000024832	cdk1 (ENSCHAG00000024822)
Otophysi	ANCESTRAL SPECIES	26	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00440000038232	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00940000156883	ENSGT00510000047589	ENSGT00940000155710.a	ENSGT00740000116794
Channel catfish	MODERN SPECIES	22	pgam1a (ENSIPUG00000000343)	marveld1 (ENSIPUG00000000351) #33	ENSIPUG00000000356	zgc:171482 (ENSIPUG00000000361)	sfrp5 (ENSIPUG00000000363) #31	GOLGA7B (ENSIPUG00000000366) #30	crtac1 (ENSIPUG00000000369) #29	LOXL4 (ENSIPUG00000000704) #26	ENSIPUG00000000715	pyroxd2 (ENSIPUG00000000727)	slc25a28 (ENSIPUG00000000758) #16	nkx3.3 (ENSIPUG00000000771)	Nkx2-3 (ENSIPUG00000000774) #17	got1 (ENSIPUG00000000781) ##18	cnnm1 (ENSIPUG00000000793) #19	hpse2 (ENSIPUG00000000802) #22	hps1 (ENSIPUG00000000808) #23	st3gal7 (ENSIPUG00000000817)	ENSIPUG00000000831 #37	morn4 (ENSIPUG00000000904)	nkx1.2la (ENSIPUG00000000917)	PRKG1 (ENSIPUG00000000923)	dkk1a (ENSIPUG00000001048)	pcdh15a (ENSIPUG00000001088)	ENSIPUG00000002311	ckba (ENSIPUG00000002321)	ENSIPUG00000002368	ENSIPUG00000002379	Cisd1 (ENSIPUG00000002387)	DHX57 (ENSIPUG00000002412)	galm (ENSIPUG00000002550)
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00940000156883	ENSGT00510000047589	ENSGT00940000155710.a	ENSGT00740000116794
Characoidei	ANCESTRAL SPECIES	5	ENSGT00390000000464	ENSGT00950000182926.b.d.a.a.a.b	ENSGT00510000049375 #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00940000156883	ENSGT00510000047589	ENSGT00940000155710.a	ENSGT00740000116794
Red-bellied piranha	MODERN SPECIES	10	marveld1 (ENSPNAG00000000351) #33	zgc:171482 (ENSPNAG00000007619)	sfrp5 (ENSPNAG00000000343) #31	ENSPNAG00000000340	ENSPNAG00000000338	GOLGA7B (ENSPNAG00000007606) #30	CRTAC1 (ENSPNAG00000000329) #29	LOXL4 (ENSPNAG00000000318) #26	zgc:123010 (ENSPNAG00000007579)	pyroxd2 (ENSPNAG00000000311)	slc25a28 (ENSPNAG00000000304) #16	nkx3.3 (ENSPNAG00000005540)	nkx2.3 (ENSPNAG00000005006) #17	got1 (ENSPNAG00000000299) ##18	CNNM1 (ENSPNAG00000030104) #19	HPSE2 (ENSPNAG00000030103) #22	hps1 (ENSPNAG00000030102) #23	st3gal7 (ENSPNAG00000030096)	ENSPNAG00000030093 #37	morn4 (ENSPNAG00000030091) #35	nkx1.2la (ENSPNAG00000030090)	prkg1a (ENSPNAG00000030089)	dkk1a (ENSPNAG00000030084)	pcdh15a (ENSPNAG00000030069)	ENSPNAG00000030016	cisd1 (ENSPNAG00000030012)	DHX57 (ENSPNAG00000030009)	galm (ENSPNAG00000030001)	atl2 (ENSPNAG00000029989)	ENSPNAG00000029973	hells (ENSPNAG00000029968)
Mexicana tetra	MODERN SPECIES	17	pgam1a (ENSAMXG00000032198)	mettl18 (ENSAMXG00000041233)	marveld1 (ENSAMXG00000002301) #33	zgc:171482 (ENSAMXG00000002299)	sfrp5 (ENSAMXG00000035696) #31	GOLGA7B (ENSAMXG00000034309) #30	CRTAC1 (ENSAMXG00000042122) #29	LOXL4 (ENSAMXG00000002265) #26	zgc:123010 (ENSAMXG00000041967)	pyroxd2 (ENSAMXG00000002255)	slc25a28 (ENSAMXG00000035752) #16	nkx3.3 (ENSAMXG00000032822)	nkx2.3 (ENSAMXG00000032911) #17	got1 (ENSAMXG00000002245) ##18	CNNM1 (ENSAMXG00000002241) #19	HPSE2 (ENSAMXG00000002240) #22	ENSAMXG00000030747	hps1 (ENSAMXG00000002227) #23	st3gal7 (ENSAMXG00000037674)	ANKRD2 (ENSAMXG00000002218) #37	morn4 (ENSAMXG00000029923) #35	nkx1.2la (ENSAMXG00000034353)	ENSAMXG00000031664	prkg1a (ENSAMXG00000002208)	dkk1a (ENSAMXG00000036955)	pcdh15a (ENSAMXG00000002174)	ENSAMXG00000043287	ENSAMXG00000037132	ENSAMXG00000035834	ENSAMXG00000002153	cisd1 (ENSAMXG00000029084)
Electric eel	MODERN SPECIES	1	ENSEEEG00000003014	marveld1 (ENSEEEG00000003037) #33	ENSEEEG00000003040	zgc:171482 (ENSEEEG00000003042)	sfrp5 (ENSEEEG00000003044) #31	GOLGA7B (ENSEEEG00000003050) #30	CRTAC1 (ENSEEEG00000003086) #29	LOXL4 (ENSEEEG00000003102) #26	ENSEEEG00000003295	pyroxd2 (ENSEEEG00000003301)	slc25a28 (ENSEEEG00000003354) #16	nkx3.3 (ENSEEEG00000003355)	nkx2.3 (ENSEEEG00000003356) #17	got1 (ENSEEEG00000003358) ##18	CNNM1 (ENSEEEG00000003359) #19	HPSE2 (ENSEEEG00000003368) #22	hps1 (ENSEEEG00000003372) #23	st3gal7 (ENSEEEG00000003373)	morn4 (ENSEEEG00000003374) #35	nkx1.2la (ENSEEEG00000003375)	prkg1a (ENSEEEG00000003379)	dkk1a (ENSEEEG00000003389)	pcdh15a (ENSEEEG00000003396)	ENSEEEG00000003400	cisd1 (ENSEEEG00000003401)	DHX57 (ENSEEEG00000003403)	galm (ENSEEEG00000003433)	atl2 (ENSEEEG00000003481)	hells (ENSEEEG00000004554)	ENSEEEG00000004611	macroh2a2 (ENSEEEG00000004618)
Cyprinoidei	ANCESTRAL SPECIES	38	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d.j	ENSGT00510000049375.c #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.e #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049 #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162535	ENSGT00390000004632	ENSGT00940000154704.d.b	ENSGT00940000165723.b	ENSGT00440000038232	ENSGT00940000156675.c	ENSGT00940000155309.o	ENSGT00940000154445.a	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	4	ENSGT00390000008727.a.a.d.j.a	ENSGT00510000049375.c.a.a #33	ENSGT00510000049375.c.b #33	ENSGT00940000165757.d.s.a	ENSGT00940000160608.g #31	ENSGT00390000000134.a.e.a #30	ENSGT00390000013726.c.b #29	ENSGT00940000157042.c.a.a #26	ENSGT00940000161036.B.a.b	ENSGT00940000164861.a	ENSGT00940000157049.f #16	ENSGT00940000165452.a.e.b	ENSGT00940000157556.a.b.b #17	ENSGT00950000183082.b.b.a.a.f ##18	ENSGT00940000157525.b.a #19	ENSGT00390000004874.a.a.rb.a #22	ENSGT00390000015298.g #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g.a.a #35	ENSGT00940000162535.b	ENSGT00940000154704.d.b.d.a.a	ENSGT00390000004632	ENSGT00940000154704.d.b.c	ENSGT00940000165723.b.d	ENSGT00940000156675.c.c	ENSGT00940000155309.o.b	ENSGT00940000154445.a.b	ENSGT00950000183132.B	ENSGT00390000003094.db	ENSGT00950000183037.B.a.n
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	343	ENSCARG00000052450	SLC35F3 (ENSCARG00000052425)	marveld1 (ENSCARG00000052412) #33	zgc:171482 (ENSCARG00000052388)	sfrp5 (ENSCARG00000052367) #31	GOLGA7B (ENSCARG00000052355) #30	CRTAC1 (ENSCARG00000051270) #29	LOXL4 (ENSCARG00000051164) #26	zgc:123010 (ENSCARG00000051020)	pyroxd2 (ENSCARG00000050386)	slc25a28 (ENSCARG00000050350) #16	nkx3.3 (ENSCARG00000050342)	nkx2.3 (ENSCARG00000050323) #17	got1 (ENSCARG00000050305) ##18	CNNM1 (ENSCARG00000050265) #19	HPSE2 (ENSCARG00000050182) #22	hps1 (ENSCARG00000049925) #23	st3gal7 (ENSCARG00000049890)	ANKRD2 (ENSCARG00000049819) #37	morn4 (ENSCARG00000049795) #35	nkx1.2la (ENSCARG00000049782)	prkg1a (ENSCARG00000049740)	dkk1a (ENSCARG00000049720)	pcdh15a (ENSCARG00000048883)	ENSCARG00000048787	cisd1 (ENSCARG00000048752)	polr1b (ENSCARG00000048483)	nanp (ENSCARG00000048443)	cyp1b1 (ENSCARG00000048427)	RMDN2 (ENSCARG00000048401)	cdc42ep3 (ENSCARG00000048384)
Goldfish	MODERN SPECIES	31	b3gat2 (ENSCARG00000068307)	OGFRL1 (ENSCARG00000068324)	asrgl1 (ENSCARG00000068335)	sfrp5 (ENSCARG00000068349) #31	GOLGA7B (ENSCARG00000068356) #30	CRTAC1 (ENSCARG00000068383) #29	ENSCARG00000068689	LOXL4 (ENSCARG00000068696) #26	zgc:123010 (ENSCARG00000068708)	pyroxd2 (ENSCARG00000068734)	slc25a28 (ENSCARG00000068831) #16	nkx3.3 (ENSCARG00000068839)	nkx2.3 (ENSCARG00000068846) #17	got1 (ENSCARG00000068854) ##18	CNNM1 (ENSCARG00000068864) #19	HPSE2 (ENSCARG00000068866) #22	cxcl12a (ENSCARG00000068871)	drgx (ENSCARG00000068874)	ENSCARG00000068877	vstm4a (ENSCARG00000068878)	LRRC18 (ENSCARG00000068886)	ENSCARG00000068894	ENSCARG00000068915	ARHGAP22 (ENSCARG00000068922)	mapk8a (ENSCARG00000068974)	ENSCARG00000069249	ENSCARG00000069261	GDF10 (ENSCARG00000069266)	prdm8 (ENSCARG00000069269)	ENSCARG00000006080	rrp12 (ENSCARG00000006349)
Cyprininae_a	ANCESTRAL SPECIES	202	ENSGT00390000008727.a.a.d.j.a	ENSGT00510000049375.c.a.a #33	ENSGT00510000049375.c.b #33	ENSGT00940000165757.d.s.a	ENSGT00940000160608.g #31	ENSGT00390000000134.a.e.a #30	ENSGT00390000013726.c.b #29	ENSGT00940000157042.c.a.a #26	ENSGT00940000161036.B.a.b	ENSGT00940000164861.a	ENSGT00940000157049.f #16	ENSGT00940000165452.a.e.b	ENSGT00940000157556.a.b.b #17	ENSGT00950000183082.b.b.a.a.f ##18	ENSGT00940000157525.b.a #19	ENSGT00390000004874.a.a.rb.a #22	ENSGT00390000015298.g #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g.a.a #35	ENSGT00940000162535.b	ENSGT00940000154704.d.b.d.a.a	ENSGT00390000004632	ENSGT00940000154704.d.b.c	ENSGT00940000165723.b.d	ENSGT00940000156675.c.c	ENSGT00940000155309.o.b	ENSGT00940000154445.a.b	ENSGT00950000183132.B	ENSGT00390000003094.db	ENSGT00950000183037.B.a.n
Common carp reference	MODERN SPECIES	48	ENSCCRG00000002885	ENSCCRG00000082523	marveld1 (ENSCCRG00000061224) #33	zgc:171482 (ENSCCRG00000054354)	sfrp5 (ENSCCRG00000059427) #31	CRTAC1 (ENSCCRG00000038325) #29	GOLGA7B (ENSCCRG00000023763) #30	ENSCCRG00000042003 #26	zgc:123010 (ENSCCRG00000051966)	pyroxd2 (ENSCCRG00000024966)	slc25a28 (ENSCCRG00000024950) #16	nkx3.3 (ENSCCRG00000048165)	nkx2.3 (ENSCCRG00000051959) #17	got1 (ENSCCRG00000016069) ##18	CNNM1 (ENSCCRG00000051557) #19	HPSE2 (ENSCCRG00000020309) #22	hps1 (ENSCCRG00000031229) #23	st3gal7 (ENSCCRG00000030262)	ENSCCRG00000030260 #37	morn4 (ENSCCRG00000074100) #35	nkx1.2la (ENSCCRG00000039674)	ENSCCRG00000077794	prkg1a (ENSCCRG00000068391)	dkk1a (ENSCCRG00000031556)	pcdh15a (ENSCCRG00000068216)	ENSCCRG00000058992	cisd1 (ENSCCRG00000066341)	polr1b (ENSCCRG00000045007)	ENSCCRG00000080158	nanp (ENSCCRG00000062124)	cyp1b1 (ENSCCRG00000033129)
Golden-line barbel	MODERN SPECIES	296	ENSSGRG00000025989	zgc:172136 (ENSSGRG00000025987)	SLC35F3 (ENSSGRG00000025982)	marveld1 (ENSSGRG00000025981) #33	ENSSGRG00000025978	sfrp5 (ENSSGRG00000025975) #31	GOLGA7B (ENSSGRG00000025971) #30	CRTAC1 (ENSSGRG00000025970) #29	LOXL4 (ENSSGRG00000025837) #26	zgc:123010 (ENSSGRG00000025836)	pyroxd2 (ENSSGRG00000025778)	slc25a28 (ENSSGRG00000025777) #16	nkx2.3 (ENSSGRG00000025775) #17	got1 (ENSSGRG00000025773) ##18	CNNM1 (ENSSGRG00000025771) #19	HPSE2 (ENSSGRG00000025762) #22	hps1 (ENSSGRG00000025761) #23	st3gal7 (ENSSGRG00000025760)	morn4 (ENSSGRG00000025759) #35	nkx1.2la (ENSSGRG00000025758)	ENSSGRG00000025757	ENSSGRG00000025754	dkk1a (ENSSGRG00000025751)	pcdh15a (ENSSGRG00000025496)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a.rb.b #22
Goldfish	MODERN SPECIES	4	dact2 (ENSCARG00000020795)	ablim1a (ENSCARG00000020260)	ENSCARG00000020216	fhip2a (ENSCARG00000019575)	zfyve21 (ENSCARG00000019523)	MDGA1 (ENSCARG00000019162)	ENSCARG00000019133	LOXL4 (ENSCARG00000019129) #26	zgc:123010 (ENSCARG00000019115)	pyroxd2 (ENSCARG00000019047)	slc25a28 (ENSCARG00000019023) #16	nkx3.3 (ENSCARG00000019016)	nkx2.3 (ENSCARG00000019008) #17	got1 (ENSCARG00000018955) ##18	CNNM1 (ENSCARG00000018945) #19	ENSCARG00000018939 #22	dkk1a (ENSCARG00000018928)	nkx1.2la (ENSCARG00000018921)	prkg1a (ENSCARG00000018840)	utp25 (ENSCARG00000018801)	SYT14 (ENSCARG00000018786)	SERTAD4 (ENSCARG00000018781)	hif1aa (ENSCARG00000018698)	ENSCARG00000018683	dhrs7 (ENSCARG00000018673)	ppm1aa (ENSCARG00000018657)	ly6pge (ENSCARG00000018652)	ENSCARG00000018615	MYOF (ENSCARG00000015344)	ENSCARG00000015084	chata (ENSCARG00000014731)
Cyprininae	ANCESTRAL SPECIES	166	ENSGT00390000003939.c	ENSGT00390000008727.a.a.d.j.b	ENSGT00510000049375.c.a.b #33	ENSGT00940000165757.d.s.b	ENSGT00940000160608.h #31	ENSGT00390000000134.a.e.b #30	ENSGT00390000013726.c.a #29	ENSGT00940000157042.c.a.b #26	ENSGT00940000161036.B.a.a	ENSGT00940000164861.b	ENSGT00940000157049.e.a #16	ENSGT00940000165452.a.e.a	ENSGT00940000157556.a.b.a #17	ENSGT00950000183082.b.b.a.a.e ##18	ENSGT00940000157525.b.b #19	ENSGT00390000004874.a.a.sb #22	ENSGT00390000015298.h #23	ENSGT00730000111173.g.a.b #35	ENSGT00940000162535.a	ENSGT00940000154704.d.b.d.a.b	ENSGT00940000165723.b.c	ENSGT00940000156675.c.d	ENSGT00940000155309.o.a	ENSGT00940000154445.a.a	ENSGT00390000003094.eb	ENSGT00950000183037.B.a.m	ENSGT00950000182992.a.b.a.a.d	ENSGT00940000157736.r	ENSGT01100000263502.A.a.b.c	ENSGT00390000000747.j	ENSGT00940000155780.e
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	4	trim9 (ENSCARG00000001975)	tmx1 (ENSCARG00000001934)	frmd6 (ENSCARG00000036946)	esr2b (ENSCARG00000036798)	ENSCARG00000036761	gphb5 (ENSCARG00000036755)	KCNH5 (ENSCARG00000036613)	ppp2r5eb (ENSCARG00000036391)	SGPP1 (ENSCARG00000036371)	SYT16 (ENSCARG00000036358)	ENSCARG00000036334	ENSCARG00000036328	ENSCARG00000036315	got1 (ENSCARG00000036264) ##18	ENSCARG00000036246 #19	HPSE2 (ENSCARG00000036161) #22	ENSCARG00000036144	morn4 (ENSCARG00000036134) #35	nkx1.2la (ENSCARG00000036120)	prkg1a (ENSCARG00000035973)	dkk1a (ENSCARG00000035957)	ENSCARG00000035947	pcdh15a (ENSCARG00000027824)	cisd1 (ENSCARG00000027451)	nanp (ENSCARG00000027436)	cyp1b1 (ENSCARG00000027420)	ENSCARG00000027398	cdc42ep3 (ENSCARG00000027386)	opn3 (ENSCARG00000027367)	ide (ENSCARG00000026655)	marchf5 (ENSCARG00000026495)
Goldfish	MODERN SPECIES	2104																HPSE2 (ENSCARG00000042603) #22	ENSCARG00000042628
Cyprininae_a	ANCESTRAL SPECIES	29	ENSGT00390000003939.c	ENSGT00390000008727.a.a.d.j.b	ENSGT00510000049375.c.a.b #33	ENSGT00940000165757.d.s.b	ENSGT00940000160608.h #31	ENSGT00390000000134.a.e.b #30	ENSGT00390000013726.c.a #29	ENSGT00940000157042.c.a.b #26	ENSGT00940000161036.B.a.a	ENSGT00940000164861.b	ENSGT00940000157049.e.a #16	ENSGT00940000165452.a.e.a	ENSGT00940000157556.a.b.a #17	ENSGT00950000183082.b.b.a.a.e ##18	ENSGT00940000157525.b.b #19	ENSGT00390000004874.a.a.sb #22	ENSGT00390000015298.h #23	ENSGT00730000111173.g.a.b #35	ENSGT00940000162535.a	ENSGT00940000154704.d.b.d.a.b	ENSGT00940000165723.b.c	ENSGT00940000156675.c.d	ENSGT00940000155309.o.a	ENSGT00940000154445.a.a	ENSGT01030000236031	ENSGT00390000003094.eb	ENSGT00950000183037.B.a.m	ENSGT00950000182992.a.b.a.a.d	ENSGT00940000157736.r	ENSGT01100000263502.A.a.b.c	ENSGT00390000000747.j
Common carp reference	MODERN SPECIES	18	ENSCCRG00000067128	ENSCCRG00000064721 #33	zgc:171482 (ENSCCRG00000077809)	sfrp5 (ENSCCRG00000061041) #31	GOLGA7B (ENSCCRG00000057182) #30	CRTAC1 (ENSCCRG00000081317) #29	LOXL4 (ENSCCRG00000002090) #26	zgc:123010 (ENSCCRG00000076868)	pyroxd2 (ENSCCRG00000051963)	slc25a28 (ENSCCRG00000068571) #16	nkx3.3 (ENSCCRG00000035993)	got1 (ENSCCRG00000036001) ##18	nkx2.3 (ENSCCRG00000035995) #17	CNNM1 (ENSCCRG00000080110) #19	ENSCCRG00000067066	HPSE2 (ENSCCRG00000001819) #22	hps1 (ENSCCRG00000072134) #23	ENSCCRG00000075057 #37	morn4 (ENSCCRG00000001790) #35	nkx1.2la (ENSCCRG00000056769)	prkg1a (ENSCCRG00000029561)	prkg1a (ENSCCRG00000013414)	dkk1a (ENSCCRG00000013419)	pcdh15a (ENSCCRG00000021498)	ENSCCRG00000057618	ENSCCRG00000044967	cisd1 (ENSCCRG00000064079)	nanp (ENSCCRG00000044983)	ENSCCRG00000065146	cyp1b1 (ENSCCRG00000062463)	cdc42ep3 (ENSCCRG00000043941)
Golden-line barbel	MODERN SPECIES	76	pcdh10b (ENSSGRG00000039441)	ENSSGRG00000039455	adra1bb (ENSSGRG00000039456)	adh5 (ENSSGRG00000039460)	eif4ea (ENSSGRG00000039472)	gar1 (ENSSGRG00000039477)	CRTAC1 (ENSSGRG00000039483) #29	LOXL4 (ENSSGRG00000039488) #26	zgc:123010 (ENSSGRG00000039496)	pyroxd2 (ENSSGRG00000039502)	slc25a28 (ENSSGRG00000039505) #16	nkx3.3 (ENSSGRG00000039506)	nkx2.3 (ENSSGRG00000039508) #17	got1 (ENSSGRG00000039513) ##18	ENSSGRG00000039534 #19	HPSE2 (ENSSGRG00000039537) #22	hps1 (ENSSGRG00000039548) #23	st3gal7 (ENSSGRG00000039553)	ANKRD2 (ENSSGRG00000039555) #37	ENSSGRG00000039556	nkx1.2la (ENSSGRG00000039560)	prkg1a (ENSSGRG00000039565)	dkk1a (ENSSGRG00000039601)	pcdh15a (ENSSGRG00000039622)	ENSSGRG00000039711	ENSSGRG00000039716	cisd1 (ENSSGRG00000039719)	ENSSGRG00000039723	nanp (ENSSGRG00000039728)	cyp1b1 (ENSSGRG00000039730)	ENSSGRG00000039736
Zebrafish	MODERN SPECIES	4	ENSDARG00000075970	SLC35F3 (ENSDARG00000059850)	marveld1 (ENSDARG00000011724) #33	zgc:171482 (ENSDARG00000074415)	sfrp5 (ENSDARG00000039041) #31	GOLGA7B (ENSDARG00000105099) #30	CRTAC1 (ENSDARG00000102517) #29	LOXL4 (ENSDARG00000025089) #26	zgc:123010 (ENSDARG00000039082)	pyroxd2 (ENSDARG00000014101)	slc25a28 (ENSDARG00000052994) #16	nkx3.3 (ENSDARG00000069327)	nkx2.3 (ENSDARG00000039095) #17	got1 (ENSDARG00000039093) ##18	CNNM1 (ENSDARG00000078087) #19	HPSE2 (ENSDARG00000078163) #22	hps1 (ENSDARG00000026170) #23	st3gal7 (ENSDARG00000039064)	ANKRD2 (ENSDARG00000002722) #37	morn4 (ENSDARG00000039062) #35	nkx1.2la (ENSDARG00000006350)	prkg1a (ENSDARG00000020656)	dkk1a (ENSDARG00000014103)	ENSDARG00000101911	pcdh15a (ENSDARG00000098257)	ENSDARG00000109618	ENSDARG00000076699	cisd1 (ENSDARG00000079516)	polr1b (ENSDARG00000077469)	nanp (ENSDARG00000075143)	cyp1b1 (ENSDARG00000068934)
Euteleosteomorpha	ANCESTRAL SPECIES	68	ENSGT00730000112219	ENSGT00510000049375 #33	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000162611.a.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00940000179277	ENSGT00940000157145	ENSGT00390000008454 #13
Acanthomorphata	ANCESTRAL SPECIES	16			ENSGT00940000175215.a.a	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000162611.a.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Fugu	MODERN SPECIES	16	ENSTRUG00000005455	pgam1a (ENSTRUG00000022599)	marveld1 (ENSTRUG00000005698) #33	ENSTRUG00000022628	ENSTRUG00000032921	zgc:171482 (ENSTRUG00000005705)	sfrp5 (ENSTRUG00000021491) #31	crtac1 (ENSTRUG00000006008) #29	LOXL4 (ENSTRUG00000006359) #26	pyroxd2 (ENSTRUG00000006805)	slc25a28 (ENSTRUG00000007096) #16	nkx3.3 (ENSTRUG00000020172)	nkx2.3 (ENSTRUG00000024381) #17	got1 (ENSTRUG00000007276) ##18	cnnm1 (ENSTRUG00000007603) #19	HPSE2 (ENSTRUG00000007806) #22	hps1 (ENSTRUG00000008073) #23	ENSTRUG00000030291	ENSTRUG00000032843	ENSTRUG00000008704	slit1a (ENSTRUG00000008791)	ARHGAP19 (ENSTRUG00000009178)	ENSTRUG00000024980	abcc2 (ENSTRUG00000009329)	cutc (ENSTRUG00000010646) #13	cox15 (ENSTRUG00000024846) #14	KCNIP2 (ENSTRUG00000025958)	ENSTRUG00000028008	HPS6 (ENSTRUG00000010666)	ENSTRUG00000010721	ldb1a (ENSTRUG00000011293)
Tetraodon	MODERN SPECIES	9	pgam1a (ENSTNIG00000008678)	marveld1 (ENSTNIG00000000905) #33	zgc:171482 (ENSTNIG00000008679)	ENSTNIG00000008680	sfrp5 (ENSTNIG00000008681) #31	golga7ba (ENSTNIG00000008682) #30	CRTAC1 (ENSTNIG00000008683) #29	LOXL4 (ENSTNIG00000008684) #26	zgc:123010 (ENSTNIG00000001303)	pyroxd2 (ENSTNIG00000008685)	slc25a28 (ENSTNIG00000008686) #16	nkx2.3 (ENSTNIG00000005826) #17	got1 (ENSTNIG00000005827) ##18	got1 (ENSTNIG00000002758) ##18	CNNM1 (ENSTNIG00000002757) #19	HPSE2 (ENSTNIG00000002756) #22	hps1 (ENSTNIG00000002755) #23	st3gal7 (ENSTNIG00000002754)	morn4 (ENSTNIG00000002753) #35	slit1a (ENSTNIG00000005554)	ARHGAP19 (ENSTNIG00000016511)	ENSTNIG00000016512	cutc (ENSTNIG00000016513) #13	cox15 (ENSTNIG00000016514) #14	KCNIP2 (ENSTNIG00000016515)	ENSTNIG00000001347	ENSTNIG00000016516	oga (ENSTNIG00000016517)	npm3 (ENSTNIG00000016518)	sufu (ENSTNIG00000016519)	zdhhc16a (ENSTNIG00000016520)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Ballan wrasse	MODERN SPECIES	380		zgc:171482 (ENSLBEG00000023823)	sfrp5 (ENSLBEG00000023832) #31	golga7ba (ENSLBEG00000023858) #30	CRTAC1 (ENSLBEG00000023893) #29	ENSLBEG00000023931 #26	ENSLBEG00000023958 #26	zgc:123010 (ENSLBEG00000023984)	pyroxd2 (ENSLBEG00000024045)	slc25a28 (ENSLBEG00000024105) #16	got1 (ENSLBEG00000024148) ##18	nkx3.3 (ENSLBEG00000024201)	nkx2.3 (ENSLBEG00000024213) #17	ENSLBEG00000024221	CNNM1 (ENSLBEG00000024249) #19	HPSE2 (ENSLBEG00000024286) #22	hps1 (ENSLBEG00000024384) #23	st3gal7 (ENSLBEG00000024440)	ANKRD2 (ENSLBEG00000024460) #37	morn4 (ENSLBEG00000024479) #35	ENSLBEG00000024501	slit1a (ENSLBEG00000024535)
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
European seabass	MODERN SPECIES	1	ENSDLAG00005014016	ENSDLAG00005013994 #33	ENSDLAG00005013980	zgc:171482 (ENSDLAG00005013971)	sfrp5 (ENSDLAG00005013957) #31	GOLGA7B (ENSDLAG00005013948) #30	CRTAC1 (ENSDLAG00005013859) #29	LOXL4 (ENSDLAG00005013817) #26	zgc:123010 (ENSDLAG00005013793)	pyroxd2 (ENSDLAG00005013653)	slc25a28 (ENSDLAG00005013638) #16	ENSDLAG00005031106	nkx2.3 (ENSDLAG00005013631) #17	got1 (ENSDLAG00005013544) ##18	CNNM1 (ENSDLAG00005013527) #19	HPSE2 (ENSDLAG00005013466) #22	hps1 (ENSDLAG00005013448) #23	st3gal7 (ENSDLAG00005013432)	ENSDLAG00005013417 #37	morn4 (ENSDLAG00005033230) #35	ENSDLAG00005033715	ENSDLAG00005028742	ENSDLAG00005010818	ARHGAP19 (ENSDLAG00005010615)	ENSDLAG00005009623	ENSDLAG00005009461 #13	ENSDLAG00005009452 #14	ENSDLAG00005009376	HPS6 (ENSDLAG00005026518)	ENSDLAG00005009332	ENSDLAG00005009139
Large yellow croaker	MODERN SPECIES	2	marveld1 (ENSLCRG00005010443) #33	ENSLCRG00005010442	ENSLCRG00005010441	zgc:171482 (ENSLCRG00005010440)	sfrp5 (ENSLCRG00005010438) #31	golga7ba (ENSLCRG00005010435) #30	CRTAC1 (ENSLCRG00005010413) #29	LOXL4 (ENSLCRG00005010408) #26	zgc:123010 (ENSLCRG00005010405)	pyroxd2 (ENSLCRG00005010402)	slc25a28 (ENSLCRG00005010400) #16	nkx3.3 (ENSLCRG00005010398)	nkx2.3 (ENSLCRG00005010397) #17	got1 (ENSLCRG00005010334) ##18	CNNM1 (ENSLCRG00005010328) #19	HPSE2 (ENSLCRG00005010325) #22	hps1 (ENSLCRG00005010318) #23	st3gal7 (ENSLCRG00005010316)	ANKRD2 (ENSLCRG00005010315) #37	ENSLCRG00005010313	ENSLCRG00005010312	ENSLCRG00005010311	slit1a (ENSLCRG00005004050)	ARHGAP19 (ENSLCRG00005004020)	ENSLCRG00005004016	ENSLCRG00005000488	cutc (ENSLCRG00005000471) #13	cox15 (ENSLCRG00005000306) #14	KCNIP2 (ENSLCRG00005000223)	ENSLCRG00005000187	ENSLCRG00005000182
Gilthead seabream	MODERN SPECIES	6	ENSSAUG00010026021	ENSSAUG00010026022	ENSSAUG00010026023	zgc:171482 (ENSSAUG00010026024)	sfrp5 (ENSSAUG00010013011) #31	golga7ba (ENSSAUG00010013014) #30	CRTAC1 (ENSSAUG00010013019) #29	LOXL4 (ENSSAUG00010013108) #26	zgc:123010 (ENSSAUG00010013149)	pyroxd2 (ENSSAUG00010013150)	slc25a28 (ENSSAUG00010013405) #16	nkx3.3 (ENSSAUG00010013410)	nkx2.3 (ENSSAUG00010013411) #17	got1 (ENSSAUG00010013416) ##18	CNNM1 (ENSSAUG00010013427) #19	HPSE2 (ENSSAUG00010013432) #22	hps1 (ENSSAUG00010013439) #23	st3gal7 (ENSSAUG00010013443)	ANKRD2 (ENSSAUG00010013445) #37	ENSSAUG00010013448	ENSSAUG00010013450	ENSSAUG00010013452	ENSSAUG00010013456	slit1a (ENSSAUG00010013534)	ARHGAP19 (ENSSAUG00010020061)	ENSSAUG00010020066	ENSSAUG00010020216	cutc (ENSSAUG00010024734) #13	cox15 (ENSSAUG00010024736) #14	KCNIP2 (ENSSAUG00010024751)	ENSSAUG00010024785
Perciformes	ANCESTRAL SPECIES	17	ENSGT00510000049375 #33	ENSGT00970000193827	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Lumpfish	MODERN SPECIES	6	ENSCLMG00005013430	marveld1 (ENSCLMG00005013429) #33	ENSCLMG00005013428	zgc:171482 (ENSCLMG00005013427)	sfrp5 (ENSCLMG00005013426) #31	GOLGA7B (ENSCLMG00005013410) #30	CRTAC1 (ENSCLMG00005013409) #29	LOXL4 (ENSCLMG00005013408) #26	zgc:123010 (ENSCLMG00005013407)	pyroxd2 (ENSCLMG00005013386)	slc25a28 (ENSCLMG00005013383) #16	nkx3.3 (ENSCLMG00005013382)	ENSCLMG00005013381	got1 (ENSCLMG00005013379) ##18	CNNM1 (ENSCLMG00005013377) #19	HPSE2 (ENSCLMG00005013376) #22	hps1 (ENSCLMG00005013374) #23	st3gal7 (ENSCLMG00005013372)	ENSCLMG00005013370 #37	ENSCLMG00005013368	ENSCLMG00005013366	ENSCLMG00005013364	ENSCLMG00005013363	slit1a (ENSCLMG00005011125)	ARHGAP19 (ENSCLMG00005011089)	ENSCLMG00005011087	ENSCLMG00005005991	cutc (ENSCLMG00005005944) #13	cox15 (ENSCLMG00005005940) #14	KCNIP2 (ENSCLMG00005005938)	HPS6 (ENSCLMG00005005933)
Stickleback	MODERN SPECIES	6	pgam1a (ENSGACG00000007692)	marveld1 (ENSGACG00000007690) #33	ENSGACG00000007685	zgc:171482 (ENSGACG00000007680)	sfrp5 (ENSGACG00000007665) #31	golga7ba (ENSGACG00000007656) #30	CRTAC1 (ENSGACG00000007647) #29	LOXL4 (ENSGACG00000007635) #26	zgc:123010 (ENSGACG00000007620)	pyroxd2 (ENSGACG00000007586)	slc25a28 (ENSGACG00000007574) #16	nkx3.3 (ENSGACG00000007573)	nkx2.3 (ENSGACG00000007568) #17	got1 (ENSGACG00000007534) ##18	CNNM1 (ENSGACG00000007529) #19	HPSE2 (ENSGACG00000007523) #22	hps1 (ENSGACG00000007506) #23	st3gal7 (ENSGACG00000007489)	ENSGACG00000007479	ENSGACG00000007469	slit1a (ENSGACG00000007441)	ARHGAP19 (ENSGACG00000007432)	ENSGACG00000007419	cutc (ENSGACG00000007400) #13	cox15 (ENSGACG00000007381) #14	KCNIP2 (ENSGACG00000007366)	HPS6 (ENSGACG00000007363)	ENSGACG00000007331	ldb1a (ENSGACG00000007317)	ENSGACG00000007308	oga (ENSGACG00000007296)
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Pike perch	MODERN SPECIES	10	ENSSLUG00000021474	marveld1 (ENSSLUG00000021471) #33	ENSSLUG00000021470	zgc:171482 (ENSSLUG00000021467)	sfrp5 (ENSSLUG00000021464) #31	golga7ba (ENSSLUG00000021452) #30	CRTAC1 (ENSSLUG00000021425) #29	LOXL4 (ENSSLUG00000021403) #26	zgc:123010 (ENSSLUG00000021394)	pyroxd2 (ENSSLUG00000021277)	slc25a28 (ENSSLUG00000021260) #16	nkx3.3 (ENSSLUG00000021257)	nkx2.3 (ENSSLUG00000021254) #17	got1 (ENSSLUG00000021245) ##18	CNNM1 (ENSSLUG00000021240) #19	HPSE2 (ENSSLUG00000021232) #22	hps1 (ENSSLUG00000021216) #23	st3gal7 (ENSSLUG00000021200)	ENSSLUG00000021193 #37	morn4 (ENSSLUG00000021185) #35	ENSSLUG00000021182	ENSSLUG00000021178	slit1a (ENSSLUG00000021011)	ARHGAP19 (ENSSLUG00000020919)	ENSSLUG00000020904	ENSSLUG00000009434	cutc (ENSSLUG00000008760) #13	cox15 (ENSSLUG00000008671) #14	KCNIP2 (ENSSLUG00000008653)	HPS6 (ENSSLUG00000008608)	ENSSLUG00000008581
Channel bull blenny	MODERN SPECIES	6	pgam1a (ENSCGOG00000015347)	marveld1 (ENSCGOG00000015344) #33	ENSCGOG00000015336	zgc:171482 (ENSCGOG00000015332)	sfrp5 (ENSCGOG00000015328) #31	golga7ba (ENSCGOG00000015325) #30	CRTAC1 (ENSCGOG00000015313) #29	LOXL4 (ENSCGOG00000015110) #26	zgc:123010 (ENSCGOG00000015095)	pyroxd2 (ENSCGOG00000014876)	slc25a28 (ENSCGOG00000014869) #16	nkx3.3 (ENSCGOG00000014866)	nkx2.3 (ENSCGOG00000014865) #17	got1 (ENSCGOG00000014821) ##18	CNNM1 (ENSCGOG00000014819) #19	HPSE2 (ENSCGOG00000014794) #22	hps1 (ENSCGOG00000014792) #23	st3gal7 (ENSCGOG00000014779)	ANKRD2 (ENSCGOG00000014778) #37	ENSCGOG00000014776	ENSCGOG00000014773	ENSCGOG00000014770	ENSCGOG00000014769	slit1a (ENSCGOG00000012624)	ARHGAP19 (ENSCGOG00000012563)	ENSCGOG00000012557	ENSCGOG00000012388	cutc (ENSCGOG00000012293) #13	cox15 (ENSCGOG00000012179) #14	KCNIP2 (ENSCGOG00000012066)	HPS6 (ENSCGOG00000012055)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Carangaria	ANCESTRAL SPECIES	19	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Carangaria_A	ANCESTRAL SPECIES	25	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A
Seriola	ANCESTRAL SPECIES	17	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A
Yellowtail amberjack	MODERN SPECIES	2713	marveld1 (ENSSLDG00000019528) #33	ENSSLDG00000019520	zgc:171482 (ENSSLDG00000019510)	sfrp5 (ENSSLDG00000019498) #31	golga7ba (ENSSLDG00000019486) #30	CRTAC1 (ENSSLDG00000019460) #29	ENSSLDG00000019436 #26	ENSSLDG00000019427 #26	zgc:123010 (ENSSLDG00000019386)	pyroxd2 (ENSSLDG00000019341)	slc25a28 (ENSSLDG00000019324) #16	nkx3.3 (ENSSLDG00000019317)	nkx2.3 (ENSSLDG00000019312) #17	got1 (ENSSLDG00000019291) ##18	CNNM1 (ENSSLDG00000019278) #19	HPSE2 (ENSSLDG00000019240) #22	hps1 (ENSSLDG00000019199) #23	st3gal7 (ENSSLDG00000019183)	ENSSLDG00000019138 #37	morn4 (ENSSLDG00000019122) #35	ENSSLDG00000019112
Greater amberjack	MODERN SPECIES	147	marveld1 (ENSSDUG00000008794) #33	ENSSDUG00000008786	zgc:171482 (ENSSDUG00000008773)	sfrp5 (ENSSDUG00000008758) #31	golga7ba (ENSSDUG00000008742) #30	CRTAC1 (ENSSDUG00000008706) #29	ENSSDUG00000008685 #26	ENSSDUG00000008672 #26	zgc:123010 (ENSSDUG00000008651)	pyroxd2 (ENSSDUG00000008623)	slc25a28 (ENSSDUG00000008608) #16	nkx3.3 (ENSSDUG00000008602)	nkx2.3 (ENSSDUG00000008599) #17	got1 (ENSSDUG00000008579) ##18	CNNM1 (ENSSDUG00000008497) #19	HPSE2 (ENSSDUG00000008325) #22	hps1 (ENSSDUG00000008227) #23	st3gal7 (ENSSDUG00000008206)	ENSSDUG00000008145 #37	morn4 (ENSSDUG00000008122) #35	ENSSDUG00000008112	ENSSDUG00000008108
Barramundi perch	MODERN SPECIES	14	pgam1a (ENSLCAG00010004235)	marveld1 (ENSLCAG00010004234) #33	ENSLCAG00010004232	zgc:171482 (ENSLCAG00010004228)	sfrp5 (ENSLCAG00010004224) #31	golga7ba (ENSLCAG00010004221) #30	CRTAC1 (ENSLCAG00010004209) #29	LOXL4 (ENSLCAG00010004189) #26	zgc:123010 (ENSLCAG00010004184)	pyroxd2 (ENSLCAG00010004145)	slc25a28 (ENSLCAG00010004135) #16	nkx3.3 (ENSLCAG00010004133)	nkx2.3 (ENSLCAG00010004130) #17	got1 (ENSLCAG00010004125) ##18	CNNM1 (ENSLCAG00010004120) #19	HPSE2 (ENSLCAG00010004113) #22	hps1 (ENSLCAG00010004110) #23	st3gal7 (ENSLCAG00010004103)	ENSLCAG00010004098 #37	morn4 (ENSLCAG00010004090) #35	ENSLCAG00010004086	ENSLCAG00010004083	map7d1b (ENSLCAG00010004081)	ENSLCAG00010004074	LSM10 (ENSLCAG00010004071)	oscp1a (ENSLCAG00010004068)	ENSLCAG00010004066	zc3h12ab (ENSLCAG00010004058)	smim13 (ENSLCAG00010004056)
Pleuronectoidei	ANCESTRAL SPECIES	25	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Turbot	MODERN SPECIES	6	ENSSMAG00000002697 #33	ENSSMAG00000002708	zgc:171482 (ENSSMAG00000002715)	sfrp5 (ENSSMAG00000002734) #31	GOLGA7B (ENSSMAG00000030452) #30	CRTAC1 (ENSSMAG00000002780) #29	LOXL4 (ENSSMAG00000002844) #26	zgc:123010 (ENSSMAG00000002904)	pyroxd2 (ENSSMAG00000002980)	slc25a28 (ENSSMAG00000003030) #16	nkx3.3 (ENSSMAG00000027149)	nkx2.3 (ENSSMAG00000003048) #17	got1 (ENSSMAG00000003052) ##18	ENSSMAG00000003068	CNNM1 (ENSSMAG00000003081) #19	HPSE2 (ENSSMAG00000003124) #22	hps1 (ENSSMAG00000003230) #23	st3gal7 (ENSSMAG00000003246)	ENSSMAG00000003260 #37	morn4 (ENSSMAG00000003311) #35	ENSSMAG00000003337	ENSSMAG00000003340	ENSSMAG00000003352	ARHGAP19 (ENSSMAG00000003538)	ENSSMAG00000003547	ENSSMAG00000003582 #13	ENSSMAG00000003608 #14	ENSSMAG00000003627	ENSSMAG00000003700	LDB1 (ENSSMAG00000003766)	ENSSMAG00000003824
Tongue sole	MODERN SPECIES	3	PGAM1 (ENSCSEG00000006519)	marveld1 (ENSCSEG00000006515) #33	ENSCSEG00000006514	zgc:171482 (ENSCSEG00000006509)	sfrp5 (ENSCSEG00000006506) #31	golga7ba (ENSCSEG00000006502) #30	CRTAC1 (ENSCSEG00000006493) #29	LOXL4 (ENSCSEG00000006478) #26	zgc:123010 (ENSCSEG00000006468)	pyroxd2 (ENSCSEG00000006444)	slc25a28 (ENSCSEG00000006441) #16	nkx3.3 (ENSCSEG00000006437)	nkx2.3 (ENSCSEG00000006432) #17	got1 (ENSCSEG00000006415) ##18	CNNM1 (ENSCSEG00000006403) #19	HPSE2 (ENSCSEG00000006339) #22	hps1 (ENSCSEG00000006320) #23	st3gal7 (ENSCSEG00000006314)	ANKRD2 (ENSCSEG00000006304) #37	morn4 (ENSCSEG00000006299) #35	ENSCSEG00000006294	gtf2a1l (ENSCSEG00000006290)	ENSCSEG00000006282	ENSCSEG00000006279	ENSCSEG00000006277	nrxn1b (ENSCSEG00000006156)	erlec1 (ENSCSEG00000006132)	GPR75 (ENSCSEG00000006128)	PSME4 (ENSCSEG00000006059)	ENSCSEG00000006049	ENSCSEG00000006045
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00510000049375 #33	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000000913	ENSMAMG00000000923 #33	ENSMAMG00000001014	zgc:171482 (ENSMAMG00000001031)	sfrp5 (ENSMAMG00000001048) #31	GOLGA7B (ENSMAMG00000024613) #30	CRTAC1 (ENSMAMG00000001076) #29	LOXL4 (ENSMAMG00000001127) #26	zgc:123010 (ENSMAMG00000001145)	pyroxd2 (ENSMAMG00000001200)	slc25a28 (ENSMAMG00000001280) #16	nkx3.3 (ENSMAMG00000001296)	nkx2.3 (ENSMAMG00000001312) #17	got1 (ENSMAMG00000001359) ##18	CNNM1 (ENSMAMG00000001389) #19	HPSE2 (ENSMAMG00000001454) #22	hps1 (ENSMAMG00000001615) #23	st3gal7 (ENSMAMG00000001658)	ENSMAMG00000001686 #37	morn4 (ENSMAMG00000001711) #35	ENSMAMG00000027836	ENSMAMG00000028573	ENSMAMG00000001729	ENSMAMG00000001778	ARHGAP19 (ENSMAMG00000001865)	ENSMAMG00000001887	ENSMAMG00000001950	ENSMAMG00000002346 #13	ENSMAMG00000002386 #14	ENSMAMG00000002419	HPS6 (ENSMAMG00000002453)
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00510000049375 #33	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00940000177979	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00940000168493	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Siamese fighting fish	MODERN SPECIES	6	CRTAC1 (ENSBSLG00000021687) #29	LOXL4 (ENSBSLG00000021670) #26	pyroxd2 (ENSBSLG00000021658)	slc25a28 (ENSBSLG00000021642) #16	nkx3.3 (ENSBSLG00000021640)	nkx2.3 (ENSBSLG00000021639) #17	ENSBSLG00000021637	zgc:123010 (ENSBSLG00000021603)	pyroxd2 (ENSBSLG00000021593)	slc25a28 (ENSBSLG00000021560) #16	nkx3.3 (ENSBSLG00000021543)	nkx2.3 (ENSBSLG00000021528) #17	ENSBSLG00000021518	got1 (ENSBSLG00000021411) ##18	CNNM1 (ENSBSLG00000021316) #19	HPSE2 (ENSBSLG00000021110) #22	hps1 (ENSBSLG00000020826) #23	st3gal7 (ENSBSLG00000020817)	ANKRD2 (ENSBSLG00000020811) #37	ENSBSLG00000020808	ENSBSLG00000020803	ENSBSLG00000020797	ENSBSLG00000020796	slit1a (ENSBSLG00000020170)	ARHGAP19 (ENSBSLG00000020038)	ENSBSLG00000020035	ENSBSLG00000017804	cutc (ENSBSLG00000017567) #13	cox15 (ENSBSLG00000017325) #14	KCNIP2 (ENSBSLG00000016791)	HPS6 (ENSBSLG00000015659)
Climbing perch	MODERN SPECIES	6	ENSATEG00000001419 #33	ENSATEG00000001393	zgc:171482 (ENSATEG00000001371)	ENSATEG00000025382	sfrp5 (ENSATEG00000001362) #31	GOLGA7B (ENSATEG00000027423) #30	CRTAC1 (ENSATEG00000001284) #29	LOXL4 (ENSATEG00000001230) #26	zgc:123010 (ENSATEG00000001220)	pyroxd2 (ENSATEG00000001168)	slc25a28 (ENSATEG00000001143) #16	nkx3.3 (ENSATEG00000028419)	nkx2.3 (ENSATEG00000001133) #17	got1 (ENSATEG00000001085) ##18	CNNM1 (ENSATEG00000000944) #19	HPSE2 (ENSATEG00000000880) #22	hps1 (ENSATEG00000000728) #23	st3gal7 (ENSATEG00000000723)	ENSATEG00000000577 #37	ENSATEG00000029114	ENSATEG00000000532	ENSATEG00000000527	ENSATEG00000000357	ARHGAP19 (ENSATEG00000000347)	ENSATEG00000000291	ENSATEG00000000283	ENSATEG00000000242 #13	ENSATEG00000000233 #14	ENSATEG00000000183	HPS6 (ENSATEG00000000137)	ENSATEG00000000127
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000168493	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000175336.a	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Aplocheiloidei	ANCESTRAL SPECIES	43	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000180462	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a	ENSGT00390000005639.a.b.d.a
Mangrove rivulus	MODERN SPECIES	23					sfrp5 (ENSKMAG00000021414) #31	golga7ba (ENSKMAG00000021404) #30	CRTAC1 (ENSKMAG00000021378) #29	ENSKMAG00000021365 #26	zgc:123010 (ENSKMAG00000021350)	pyroxd2 (ENSKMAG00000021330)	slc25a28 (ENSKMAG00000021320) #16	nkx3.3 (ENSKMAG00000021316)	nkx2.3 (ENSKMAG00000021312) #17	got1 (ENSKMAG00000021303) ##18	CNNM1 (ENSKMAG00000021292) #19	HPSE2 (ENSKMAG00000021280) #22	hps1 (ENSKMAG00000021266) #23	st3gal7 (ENSKMAG00000021261)	morn4 (ENSKMAG00000021255) #35	ENSKMAG00000021243	ENSKMAG00000021239	slit1a (ENSKMAG00000021147)	ARHGAP19 (ENSKMAG00000021113)	ENSKMAG00000021103	ENSKMAG00000021067	cutc (ENSKMAG00000021035) #13	cox15 (ENSKMAG00000021015) #14	KCNIP2 (ENSKMAG00000020980)	HPS6 (ENSKMAG00000020955)	ENSKMAG00000020937	ldb1a (ENSKMAG00000020910)
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015018533	ENSNFUG00015018529	zgc:171482 (ENSNFUG00015018528)	SFRP5 (ENSNFUG00015018523) #31	GOLGA7BB (ENSNFUG00015018520) #30	CRTAC1 (ENSNFUG00015018504) #29	ENSNFUG00015018502	LOXL4 (ENSNFUG00015018470) #26	TTC31 (ENSNFUG00015018453)	pyroxd2 (ENSNFUG00015018415)	SLC25A28 (ENSNFUG00015018407) #16	nkx3.3 (ENSNFUG00015018405)	nkx2.3 (ENSNFUG00015018403) #17	got1 (ENSNFUG00015018375) ##18	CNNM1 (ENSNFUG00015018360) #19	HPSE2 (ENSNFUG00015018350) #22	hps1 (ENSNFUG00015018344) #23	st3gal7 (ENSNFUG00015018341)	morn4 (ENSNFUG00015018340) #35	SLIT1A (ENSNFUG00015015720)	ARHGAP19 (ENSNFUG00015015367)	LCOR (ENSNFUG00015015325)	ABCC2 (ENSNFUG00015005526)	cutc (ENSNFUG00015004545) #13	cox15 (ENSNFUG00015004495) #14	ENSNFUG00015004484	ENSNFUG00015004481	KCNIP2 (ENSNFUG00015004462)	ENSNFUG00015004450	ENSNFUG00015004448	ENSNFUG00015004445
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a	ENSGT00390000005639.a.b.d.a
NAME_4	ANCESTRAL SPECIES	2	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a	ENSGT00390000005639.a.b.d.a
Mummichog	MODERN SPECIES	2448	pgam1a (ENSFHEG00000002210)	marveld1 (ENSFHEG00000002216) #33	ENSFHEG00000002220	zgc:171482 (ENSFHEG00000002233)	sfrp5 (ENSFHEG00000002237) #31	golga7ba (ENSFHEG00000002244) #30	CRTAC1 (ENSFHEG00000002264) #29	LOXL4 (ENSFHEG00000002295) #26	zgc:123010 (ENSFHEG00000002306)	pyroxd2 (ENSFHEG00000002338)	slc25a28 (ENSFHEG00000002348) #16	nkx3.3 (ENSFHEG00000002355)	nkx2.3 (ENSFHEG00000002367) #17	got1 (ENSFHEG00000002387) ##18	CNNM1 (ENSFHEG00000002420) #19	HPSE2 (ENSFHEG00000002433) #22	hps1 (ENSFHEG00000002446) #23	st3gal7 (ENSFHEG00000002456)	morn4 (ENSFHEG00000002479) #35	ENSFHEG00000000080	ENSFHEG00000002961	slit1a (ENSFHEG00000003102)	ARHGAP19 (ENSFHEG00000003120)	ENSFHEG00000003139	ENSFHEG00000003665	cutc (ENSFHEG00000003722) #13	cox15 (ENSFHEG00000003750) #14	KCNIP2 (ENSFHEG00000003779)	HPS6 (ENSFHEG00000003801)	ENSFHEG00000003816	ldb1a (ENSFHEG00000003863)
Sheepshead minnow	MODERN SPECIES	113	marveld1 (ENSCVAG00000013627) #33	ENSCVAG00000013617	zgc:171482 (ENSCVAG00000013606)	sfrp5 (ENSCVAG00000013587) #31	golga7ba (ENSCVAG00000013553) #30	CRTAC1 (ENSCVAG00000013370) #29	LOXL4 (ENSCVAG00000013336) #26	ENSCVAG00000013303 #26	zgc:123010 (ENSCVAG00000013288)	pyroxd2 (ENSCVAG00000013275)	slc25a28 (ENSCVAG00000013208) #16	nkx3.3 (ENSCVAG00000000340)	nkx2.3 (ENSCVAG00000013182) #17	got1 (ENSCVAG00000013174) ##18	CNNM1 (ENSCVAG00000013139) #19	HPSE2 (ENSCVAG00000013108) #22
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a	ENSGT00390000005639.a.b.d.a
Poecilia	ANCESTRAL SPECIES	11	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a	ENSGT00390000005639.a.b.d.a
NAME_6	ANCESTRAL SPECIES	25	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000164383.b	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.a	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a	ENSGT00390000005639.a.b.d.a
Sailfin molly	MODERN SPECIES	231						CRTAC1 (ENSPLAG00000007804) #29	ENSPLAG00000007770 #26	ENSPLAG00000007732 #26	zgc:123010 (ENSPLAG00000007711)	pyroxd2 (ENSPLAG00000007698)	slc25a28 (ENSPLAG00000007647) #16	nkx3.3 (ENSPLAG00000007630)	nkx2.3 (ENSPLAG00000000159) #17	got1 (ENSPLAG00000007600) ##18	CNNM1 (ENSPLAG00000007571) #19	HPSE2 (ENSPLAG00000007551) #22	hps1 (ENSPLAG00000007450) #23	st3gal7 (ENSPLAG00000007373)	morn4 (ENSPLAG00000007296) #35	ENSPLAG00000007279	ENSPLAG00000007213	slit1a (ENSPLAG00000006837)	ENSPLAG00000006725	ARHGAP19 (ENSPLAG00000006706)	ENSPLAG00000006694	ENSPLAG00000006652	cutc (ENSPLAG00000006581) #13	cox15 (ENSPLAG00000006546) #14	KCNIP2 (ENSPLAG00000006537)
Amazon molly	MODERN SPECIES	555										pyroxd2 (ENSPFOG00000012391)	slc25a28 (ENSPFOG00000012507) #16	nkx3.3 (ENSPFOG00000020885)	nkx2.3 (ENSPFOG00000012537) #17	got1 (ENSPFOG00000012559) ##18	CNNM1 (ENSPFOG00000012597) #19	HPSE2 (ENSPFOG00000012702) #22	hps1 (ENSPFOG00000012875) #23	st3gal7 (ENSPFOG00000012974)	morn4 (ENSPFOG00000013001) #35	ENSPFOG00000013017	ENSPFOG00000013051	slit1a (ENSPFOG00000013298)	ARHGAP19 (ENSPFOG00000013841)	ENSPFOG00000013897	ENSPFOG00000013938	cox15 (ENSPFOG00000014173) #14	KCNIP2 (ENSPFOG00000014204)	HPS6 (ENSPFOG00000014237)	ENSPFOG00000014261	ldb1a (ENSPFOG00000014504)	ENSPFOG00000014566
Guppy	MODERN SPECIES	445	marveld1 (ENSPREG00000019221) #33	ENSPREG00000019229	zgc:171482 (ENSPREG00000019241)	sfrp5 (ENSPREG00000019287) #31	golga7ba (ENSPREG00000019525) #30	CRTAC1 (ENSPREG00000019532) #29	ENSPREG00000019565 #26	ENSPREG00000019578 #26	zgc:123010 (ENSPREG00000019587)	pyroxd2 (ENSPREG00000019619)	slc25a28 (ENSPREG00000019641) #16	nkx3.3 (ENSPREG00000019662)	nkx2.3 (ENSPREG00000019670) #17	got1 (ENSPREG00000019685) ##18	CNNM1 (ENSPREG00000019717) #19	HPSE2 (ENSPREG00000019796) #22	hps1 (ENSPREG00000019883) #23	st3gal7 (ENSPREG00000019927)	morn4 (ENSPREG00000019999) #35	ENSPREG00000020007	ENSPREG00000020012	ENSPREG00000020025	ENSPREG00000020066	slit1a (ENSPREG00000020253)	ARHGAP19 (ENSPREG00000020307)	ENSPREG00000020339	ENSPREG00000020351	cutc (ENSPREG00000020392) #13	cox15 (ENSPREG00000020424) #14	KCNIP2 (ENSPREG00000020551)	ENSPREG00000020571
Platyfish	MODERN SPECIES	14	marveld1 (ENSXMAG00000020099) #33	ENSXMAG00000020097	zgc:171482 (ENSXMAG00000002641)	sfrp5 (ENSXMAG00000002638) #31	golga7ba (ENSXMAG00000002635) #30	CRTAC1 (ENSXMAG00000002622) #29	ENSXMAG00000029052 #26	ENSXMAG00000024239 #26	zgc:123010 (ENSXMAG00000002598)	pyroxd2 (ENSXMAG00000002582)	slc25a28 (ENSXMAG00000002580) #16	nkx3.3 (ENSXMAG00000023050)	nkx2.3 (ENSXMAG00000027829) #17	got1 (ENSXMAG00000022048) ##18	CNNM1 (ENSXMAG00000002566) #19	HPSE2 (ENSXMAG00000002558) #22	hps1 (ENSXMAG00000002534) #23	st3gal7 (ENSXMAG00000002526)	morn4 (ENSXMAG00000027912) #35	ENSXMAG00000021674	ENSXMAG00000002515	ENSXMAG00000002481	slit1a (ENSXMAG00000002408)	ARHGAP19 (ENSXMAG00000013379)	ENSXMAG00000024016	ENSXMAG00000013392	cutc (ENSXMAG00000013437) #13	cox15 (ENSXMAG00000013440) #14	KCNIP2 (ENSXMAG00000013446)	HPS6 (ENSXMAG00000013454)	ENSXMAG00000013456
Oryzias	ANCESTRAL SPECIES	6	ENSGT00970000193827	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT01100000265163	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.c	ENSGT00940000164383.d	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00510000049375 #33	ENSGT00970000193827	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT01100000265163	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.b	ENSGT00940000162611.b	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.c	ENSGT00940000164383.d	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a
Javanese ricefish	MODERN SPECIES	6	marveld1 (ENSOJAG00000013004) #33	ENSOJAG00000013022	zgc:171482 (ENSOJAG00000013050)	sfrp5 (ENSOJAG00000013058) #31	golga7ba (ENSOJAG00000013072) #30	CRTAC1 (ENSOJAG00000013109) #29	LOXL4 (ENSOJAG00000013309) #26	zgc:123010 (ENSOJAG00000013423)	pyroxd2 (ENSOJAG00000013451)	slc25a28 (ENSOJAG00000013902) #16	nkx3.3 (ENSOJAG00000013915)	nkx2.3 (ENSOJAG00000013921) #17	got1 (ENSOJAG00000013930) ##18	ENSOJAG00000013960	CNNM1 (ENSOJAG00000013995) #19	HPSE2 (ENSOJAG00000014022) #22	hps1 (ENSOJAG00000014107) #23	st3gal7 (ENSOJAG00000014117)	morn4 (ENSOJAG00000014128) #35	ENSOJAG00000014149	ENSOJAG00000014178	ENSOJAG00000014226	slit1a (ENSOJAG00000014244)	ARHGAP19 (ENSOJAG00000014586)	ENSOJAG00000014655	ENSOJAG00000014772	ENSOJAG00000016036	cutc (ENSOJAG00000017954) #13	cox15 (ENSOJAG00000018054) #14	KCNIP2 (ENSOJAG00000018151)	ENSOJAG00000018353
Indian medaka	MODERN SPECIES	27	pgam1a (ENSOMEG00000003552)	marveld1 (ENSOMEG00000003543) #33	ENSOMEG00000003536	zgc:171482 (ENSOMEG00000003526)	sfrp5 (ENSOMEG00000003509) #31	golga7ba (ENSOMEG00000003486) #30	CRTAC1 (ENSOMEG00000003461) #29	LOXL4 (ENSOMEG00000003421) #26	zgc:123010 (ENSOMEG00000003408)	pyroxd2 (ENSOMEG00000003379)	slc25a28 (ENSOMEG00000003332) #16	nkx3.3 (ENSOMEG00000003321)	nkx2.3 (ENSOMEG00000003316) #17	got1 (ENSOMEG00000003293) ##18	CNNM1 (ENSOMEG00000003230) #19	HPSE2 (ENSOMEG00000003198) #22	hps1 (ENSOMEG00000003177) #23	st3gal7 (ENSOMEG00000003156)	morn4 (ENSOMEG00000003130) #35	ENSOMEG00000003116	slit1a (ENSOMEG00000003088)	ARHGAP19 (ENSOMEG00000003047)	ENSOMEG00000003032	ENSOMEG00000003010	ENSOMEG00000002962	cutc (ENSOMEG00000002943) #13	cox15 (ENSOMEG00000002912) #14	KCNIP2 (ENSOMEG00000002878)	HPS6 (ENSOMEG00000000730)	ENSOMEG00000002780	ldb1a (ENSOMEG00000002757)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT01100000265163	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.c	ENSGT00940000164383.d	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Chinese medaka	MODERN SPECIES	557	ENSOSIG00000005059	ENSOSIG00000005060	zgc:171482 (ENSOSIG00000005061)	sfrp5 (ENSOSIG00000005063) #31	golga7ba (ENSOSIG00000005065) #30	CRTAC1 (ENSOSIG00000005087) #29	LOXL4 (ENSOSIG00000006771) #26	zgc:123010 (ENSOSIG00000007189)	pyroxd2 (ENSOSIG00000007194)	slc25a28 (ENSOSIG00000007272) #16	nkx3.3 (ENSOSIG00000007274)	nkx2.3 (ENSOSIG00000007275) #17	got1 (ENSOSIG00000007277) ##18	ENSOSIG00000007278	CNNM1 (ENSOSIG00000007279) #19	HPSE2 (ENSOSIG00000007281) #22	hps1 (ENSOSIG00000007284) #23	st3gal7 (ENSOSIG00000007303)	morn4 (ENSOSIG00000007305) #35	ENSOSIG00000007306	ENSOSIG00000007308	slit1a (ENSOSIG00000007375)	ENSOSIG00000015354
Japanese Medaka HdrR	MODERN SPECIES	6	ENSORLG00000007598	zgc:171482 (ENSORLG00000007607)	sfrp5 (ENSORLG00000007621) #31	GOLGA7B (ENSORLG00000023120) #30	CRTAC1 (ENSORLG00000007646) #29	ENSORLG00000025258 #26	ENSORLG00000007662 #26	zgc:123010 (ENSORLG00000007675)	pyroxd2 (ENSORLG00000007699)	slc25a28 (ENSORLG00000007710) #16	nkx3.3 (ENSORLG00000007716)	nkx2.3 (ENSORLG00000007722) #17	got1 (ENSORLG00000007741) ##18	ENSORLG00000021808	CNNM1 (ENSORLG00000007759) #19	HPSE2 (ENSORLG00000028285) #22	hps1 (ENSORLG00000007785) #23	st3gal7 (ENSORLG00000007799)	morn4 (ENSORLG00000023611) #35	ENSORLG00000030348	slit1a (ENSORLG00000007918)	ENSORLG00000007936	ENSORLG00000030131	ENSORLG00000027419	ENSORLG00000008249	cutc (ENSORLG00000008290) #13	cox15 (ENSORLG00000008304) #14	KCNIP2 (ENSORLG00000008321)	HPS6 (ENSORLG00000008323)	ENSORLG00000008367	ldb1a (ENSORLG00000008393)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000170319	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Amphiprion	ANCESTRAL SPECIES	13	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Clown anemonefish	MODERN SPECIES	1706					sfrp5 (ENSAOCG00000006022) #31	golga7ba (ENSAOCG00000006018) #30	CRTAC1 (ENSAOCG00000000280) #29	LOXL4 (ENSAOCG00000005959) #26	zgc:123010 (ENSAOCG00000005910)	pyroxd2 (ENSAOCG00000005899)	slc25a28 (ENSAOCG00000002502) #16	nkx3.3 (ENSAOCG00000005851)	nkx2.3 (ENSAOCG00000005843) #17	got1 (ENSAOCG00000005822) ##18	CNNM1 (ENSAOCG00000005791) #19	HPSE2 (ENSAOCG00000005770) #22	hps1 (ENSAOCG00000005652) #23	st3gal7 (ENSAOCG00000005559)	ANKRD2 (ENSAOCG00000005542) #37	morn4 (ENSAOCG00000005518) #35	ENSAOCG00000005501	ENSAOCG00000005488
Orange clownfish	MODERN SPECIES	12	marveld1 (ENSAPEG00000014120) #33	ENSAPEG00000014131	zgc:171482 (ENSAPEG00000014154)	sfrp5 (ENSAPEG00000014169) #31	golga7ba (ENSAPEG00000014181) #30	CRTAC1 (ENSAPEG00000014202) #29	LOXL4 (ENSAPEG00000014247) #26	zgc:123010 (ENSAPEG00000014305)	pyroxd2 (ENSAPEG00000014336)	slc25a28 (ENSAPEG00000014360) #16	nkx3.3 (ENSAPEG00000014379)	nkx2.3 (ENSAPEG00000014383) #17	got1 (ENSAPEG00000014394) ##18	ENSAPEG00000014414	CNNM1 (ENSAPEG00000014434) #19	HPSE2 (ENSAPEG00000014449) #22	hps1 (ENSAPEG00000014624) #23	st3gal7 (ENSAPEG00000014662)	ANKRD2 (ENSAPEG00000014682) #37	morn4 (ENSAPEG00000014710) #35	ENSAPEG00000014735	ENSAPEG00000014749	slit1a (ENSAPEG00000014782)	ARHGAP19 (ENSAPEG00000014919)	ENSAPEG00000014964	ENSAPEG00000014998	cutc (ENSAPEG00000015138) #13	cox15 (ENSAPEG00000015197) #14	KCNIP2 (ENSAPEG00000015223)	ENSAPEG00000015270	HPS6 (ENSAPEG00000015323)
Spiny chromis	MODERN SPECIES	279							CRTAC1 (ENSAPOG00000019545) #29	LOXL4 (ENSAPOG00000000560) #26	zgc:123010 (ENSAPOG00000019633)	pyroxd2 (ENSAPOG00000019643)	slc25a28 (ENSAPOG00000019664) #16	nkx3.3 (ENSAPOG00000019669)	nkx2.3 (ENSAPOG00000019713) #17	got1 (ENSAPOG00000019764) ##18	CNNM1 (ENSAPOG00000019783) #19	HPSE2 (ENSAPOG00000020015) #22	hps1 (ENSAPOG00000020112) #23	st3gal7 (ENSAPOG00000020131)	ANKRD2 (ENSAPOG00000020286) #37	morn4 (ENSAPOG00000020325) #35	ENSAPOG00000020337	ENSAPOG00000020357	slit1a (ENSAPOG00000020593)	ARHGAP19 (ENSAPOG00000020600)	ENSAPOG00000020777	cutc (ENSAPOG00000020837) #13	cox15 (ENSAPOG00000020881) #14	KCNIP2 (ENSAPOG00000020916)
Bicolor damselfish	MODERN SPECIES	405	pgam1a (ENSSPAG00000013780)	marveld1 (ENSSPAG00000013765) #33	ENSSPAG00000013756	zgc:171482 (ENSSPAG00000013724)	sfrp5 (ENSSPAG00000013711) #31	golga7ba (ENSSPAG00000013700) #30	CRTAC1 (ENSSPAG00000013676) #29	LOXL4 (ENSSPAG00000013636) #26	zgc:123010 (ENSSPAG00000013621)	pyroxd2 (ENSSPAG00000013568)	slc25a28 (ENSSPAG00000013538) #16	nkx3.3 (ENSSPAG00000013532)	nkx2.3 (ENSSPAG00000013515) #17	got1 (ENSSPAG00000013469) ##18	CNNM1 (ENSSPAG00000013414) #19	HPSE2 (ENSSPAG00000013299) #22	hps1 (ENSSPAG00000013226) #23	st3gal7 (ENSSPAG00000013210)	ENSSPAG00000013147 #37	morn4 (ENSSPAG00000013126) #35	ENSSPAG00000013113	ENSSPAG00000013103	ENSSPAG00000013092
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000177979	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT01100000263518.A.b	ENSGT00940000164383.g	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546	ENSGT00530000063586.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b.i.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h.a	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b.i.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h.a	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00950000182926.b.d.a.a.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00940000165757.d	ENSGT00940000160608 #31	ENSGT00390000000134.a.d #30	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000161036.B.a	ENSGT00940000164861	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b.i.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000164383.h.a	ENSGT00940000179277	ENSGT00940000164383.g	ENSGT00390000008454 #13	ENSGT00390000002223 #14	ENSGT00940000157798.a	ENSGT00390000001546
Eastern happy	MODERN SPECIES	4	marveld1 (ENSACLG00000010546) #33	ENSACLG00000010535	ENSACLG00000010524	zgc:171482 (ENSACLG00000010511)	sfrp5 (ENSACLG00000010486) #31	golga7ba (ENSACLG00000010439) #30	CRTAC1 (ENSACLG00000010222) #29	LOXL4 (ENSACLG00000010205) #26	zgc:123010 (ENSACLG00000010188)	pyroxd2 (ENSACLG00000010143)	slc25a28 (ENSACLG00000010128) #16	nkx3.3 (ENSACLG00000010124)	nkx2.3 (ENSACLG00000010118) #17	got1 (ENSACLG00000010095) ##18	CNNM1 (ENSACLG00000010047) #19	HPSE2 (ENSACLG00000009957) #22	hps1 (ENSACLG00000009914) #23	st3gal7 (ENSACLG00000009905)	ENSACLG00000009554 #37	morn4 (ENSACLG00000009540) #35	ENSACLG00000009527	ENSACLG00000009523	slit1a (ENSACLG00000009382)	ARHGAP19 (ENSACLG00000009372)	ENSACLG00000008907	ENSACLG00000008892	ENSACLG00000008876 #12	ENSACLG00000008527	cutc (ENSACLG00000008109) #13	cox15 (ENSACLG00000008079) #14	ENSACLG00000008075
Zebra mbuna	MODERN SPECIES	1095	pgam1a (ENSMZEG00005027718)	marveld1 (ENSMZEG00005027719) #33	ENSMZEG00005027720	zgc:171482 (ENSMZEG00005027721)	sfrp5 (ENSMZEG00005027723) #31	golga7ba (ENSMZEG00005027725) #30	CRTAC1 (ENSMZEG00005027727) #29	LOXL4 (ENSMZEG00005027731) #26	zgc:123010 (ENSMZEG00005027733)	pyroxd2 (ENSMZEG00005027734)	slc25a28 (ENSMZEG00005027738) #16	nkx3.3 (ENSMZEG00005027739)	nkx2.3 (ENSMZEG00005027740) #17	got1 (ENSMZEG00005027741) ##18	CNNM1 (ENSMZEG00005027743) #19	HPSE2 (ENSMZEG00005027745) #22	hps1 (ENSMZEG00005027746) #23	st3gal7 (ENSMZEG00005027749)	ENSMZEG00005027751 #37	morn4 (ENSMZEG00005027754) #35	ENSMZEG00005027756	ENSMZEG00005000159	slit1a (ENSMZEG00005000186)	ARHGAP19 (ENSMZEG00005000419)	ENSMZEG00005000431	ENSMZEG00005000570	ENSMZEG00005000717	cutc (ENSMZEG00005000833) #13	cox15 (ENSMZEG00005000858) #14	ENSMZEG00005000888	ENSMZEG00005001014
P. nyererei	MODERN SPECIES	431	ENSPNYG00000007729	pgam1a (ENSPNYG00000007741)	ENSPNYG00000007749	marveld1 (ENSPNYG00000007758) #33	zgc:171482 (ENSPNYG00000007773)	sfrp5 (ENSPNYG00000007783) #31	golga7ba (ENSPNYG00000007803) #30	CRTAC1 (ENSPNYG00000007818) #29	LOXL4 (ENSPNYG00000007859) #26	zgc:123010 (ENSPNYG00000007893)	pyroxd2 (ENSPNYG00000007911)	slc25a28 (ENSPNYG00000007955) #16	nkx3.3 (ENSPNYG00000008015)	got1 (ENSPNYG00000008027) ##18	CNNM1 (ENSPNYG00000008062) #19	HPSE2 (ENSPNYG00000008110) #22	hps1 (ENSPNYG00000008230) #23	st3gal7 (ENSPNYG00000008303)	ENSPNYG00000008397 #37	morn4 (ENSPNYG00000008589) #35	ENSPNYG00000008602	ENSPNYG00000008611	slit1a (ENSPNYG00000008647)	ARHGAP19 (ENSPNYG00000008747)	ENSPNYG00000008765	ENSPNYG00000008805	cutc (ENSPNYG00000008909) #13	cox15 (ENSPNYG00000009012) #14	KCNIP2 (ENSPNYG00000009028)	HPS6 (ENSPNYG00000009048)	ENSPNYG00000009074
Burton s mouthbrooder	MODERN SPECIES	275	pgam1a (ENSHBUG00000023233)	marveld1 (ENSHBUG00000023250) #33	ENSHBUG00000000713	zgc:171482 (ENSHBUG00000023289)	sfrp5 (ENSHBUG00000023302) #31	golga7ba (ENSHBUG00000023337) #30	CRTAC1 (ENSHBUG00000023382) #29	LOXL4 (ENSHBUG00000023431) #26	zgc:123010 (ENSHBUG00000023501)	pyroxd2 (ENSHBUG00000023594)	slc25a28 (ENSHBUG00000023629) #16	nkx3.3 (ENSHBUG00000023635)	nkx2.3 (ENSHBUG00000023642) #17	got1 (ENSHBUG00000023679) ##18	CNNM1 (ENSHBUG00000023711) #19	HPSE2 (ENSHBUG00000023726) #22	hps1 (ENSHBUG00000023838) #23	st3gal7 (ENSHBUG00000002137)	ENSHBUG00000002190 #37	morn4 (ENSHBUG00000002213) #35	ENSHBUG00000002221	ENSHBUG00000002232	slit1a (ENSHBUG00000000037)	ARHGAP19 (ENSHBUG00000002367)	ENSHBUG00000002385
Lyretail cichlid	MODERN SPECIES	295	ENSNBRG00000021015	marveld1 (ENSNBRG00000021023) #33	zgc:171482 (ENSNBRG00000021035)	sfrp5 (ENSNBRG00000021056) #31	golga7ba (ENSNBRG00000021066) #30	CRTAC1 (ENSNBRG00000021083) #29	ENSNBRG00000021101 #26	ENSNBRG00000021119 #26	ENSNBRG00000021137 #26	zgc:123010 (ENSNBRG00000021157)	pyroxd2 (ENSNBRG00000021183)	slc25a28 (ENSNBRG00000021206) #16	nkx3.3 (ENSNBRG00000021221)	got1 (ENSNBRG00000021229) ##18	CNNM1 (ENSNBRG00000021257) #19	HPSE2 (ENSNBRG00000021291) #22	hps1 (ENSNBRG00000021417) #23	st3gal7 (ENSNBRG00000021500)	ENSNBRG00000021512 #37	morn4 (ENSNBRG00000021528) #35	ENSNBRG00000021544	slit1a (ENSNBRG00000021572)	ENSNBRG00000021644
Nile tilapia	MODERN SPECIES	4	marveld1 (ENSONIG00000033243) #33	ENSONIG00000033910	zgc:171482 (ENSONIG00000018365)	sfrp5 (ENSONIG00000018364) #31	golga7ba (ENSONIG00000018362) #30	CRTAC1 (ENSONIG00000018358) #29	LOXL4 (ENSONIG00000018355) #26	zgc:123010 (ENSONIG00000018353)	pyroxd2 (ENSONIG00000018349)	slc25a28 (ENSONIG00000034190) #16	nkx3.3 (ENSONIG00000018347)	nkx2-3 (ENSONIG00000034563) #17	got1 (ENSONIG00000018342) ##18	ENSONIG00000030907	CNNM1 (ENSONIG00000018340) #19	HPSE2 (ENSONIG00000018339) #22	hps1 (ENSONIG00000018337) #23	st3gal7 (ENSONIG00000018336)	ENSONIG00000018333 #37	morn4 (ENSONIG00000018332) #35	ENSONIG00000030690	ENSONIG00000018331	ENSONIG00000039949	slit1a (ENSONIG00000018325)	ARHGAP19 (ENSONIG00000018324)	ENSONIG00000018323	ENSONIG00000030995	ENSONIG00000030255	ENSONIG00000028031	cutc (ENSONIG00000009490) #13	cox15 (ENSONIG00000009492) #14
Midas cichlid	MODERN SPECIES	452	ENSACIG00000021475	ENSACIG00000021489	marveld1 (ENSACIG00000021493) #33	ENSACIG00000021502	zgc:171482 (ENSACIG00000021512)	sfrp5 (ENSACIG00000021531) #31	golga7ba (ENSACIG00000021626) #30	CRTAC1 (ENSACIG00000021638) #29	LOXL4 (ENSACIG00000021656) #26	zgc:123010 (ENSACIG00000021684)	pyroxd2 (ENSACIG00000021717)	slc25a28 (ENSACIG00000021745) #16	nkx3.3 (ENSACIG00000021761)	got1 (ENSACIG00000021770) ##18	CNNM1 (ENSACIG00000021793) #19	HPSE2 (ENSACIG00000021851) #22	hps1 (ENSACIG00000021933) #23	st3gal7 (ENSACIG00000021971)	ENSACIG00000022013 #37	ENSACIG00000022140	ENSACIG00000022148	ENSACIG00000022157	slit1a (ENSACIG00000022168)	ARHGAP19 (ENSACIG00000022216)	ENSACIG00000022233	ENSACIG00000022241	ENSACIG00000022277	cutc (ENSACIG00000022346) #13	cox15 (ENSACIG00000022369) #14	KCNIP2 (ENSACIG00000022478)	HPS6 (ENSACIG00000022484)
Tiger tail seahorse	MODERN SPECIES	108	plek (ENSHCOG00000018052)	ENSHCOG00000018066	zgc:171482 (ENSHCOG00000018086)	ENSHCOG00000018091	sfrp5 (ENSHCOG00000018105) #31	GOLGA7B (ENSHCOG00000018123) #30	CRTAC1 (ENSHCOG00000018161) #29	ENSHCOG00000018186 #26	ENSHCOG00000018200 #26	zgc:123010 (ENSHCOG00000018210)	pyroxd2 (ENSHCOG00000018248)	slc25a28 (ENSHCOG00000018276) #16	nkx2.3 (ENSHCOG00000018280) #17	got1 (ENSHCOG00000018316) ##18	CNNM1 (ENSHCOG00000018366) #19	HPSE2 (ENSHCOG00000018471) #22	hps1 (ENSHCOG00000018534) #23	st3gal7 (ENSHCOG00000018649)	st3gal7 (ENSHCOG00000000764)	ENSHCOG00000018725	ENSHCOG00000018739	ENSHCOG00000018769	slit1a (ENSHCOG00000018867)	ARHGAP19 (ENSHCOG00000018882)	ENSHCOG00000018973	cutc (ENSHCOG00000019004) #13	cox15 (ENSHCOG00000019028) #14	KCNIP2 (ENSHCOG00000019056)	HPS6 (ENSHCOG00000019085)	ENSHCOG00000019125	ldb1a (ENSHCOG00000019149)
Pinecone sodierfish	MODERN SPECIES	6	pi4k2a (ENSMMDG00005008344) #36	marveld1 (ENSMMDG00005008346) #33	ENSMMDG00005008349	zgc:171482 (ENSMMDG00005008352)	sfrp5 (ENSMMDG00005008355) #31	golga7ba (ENSMMDG00005008357) #30	CRTAC1 (ENSMMDG00005008370) #29	LOXL4 (ENSMMDG00005008634) #26	zgc:123010 (ENSMMDG00005009376)	pyroxd2 (ENSMMDG00005009398)	slc25a28 (ENSMMDG00005009667) #16	nkx3.3 (ENSMMDG00005009687)	nkx2.3 (ENSMMDG00005009689) #17	got1 (ENSMMDG00005009694) ##18	CNNM1 (ENSMMDG00005009709) #19	HPSE2 (ENSMMDG00005009712) #22	hps1 (ENSMMDG00005009716) #23	st3gal7 (ENSMMDG00005009720)	ENSMMDG00005009745 #37	morn4 (ENSMMDG00005009747) #35	ENSMMDG00005009749	ENSMMDG00005009752	ENSMMDG00005009753	slit1a (ENSMMDG00005009763)	ARHGAP19 (ENSMMDG00005009773)	ENSMMDG00005009779	ENSMMDG00005009844	cutc (ENSMMDG00005011130) #13	cox15 (ENSMMDG00005011167) #14	KCNIP2 (ENSMMDG00005011357)	HPS6 (ENSMMDG00005011364)
Cod	MODERN SPECIES	6						ENSGMOG00000030430	zgc:171482 (ENSGMOG00000010508)	ENSGMOG00000030895 #26	zgc:123010 (ENSGMOG00000018473)	pyroxd2 (ENSGMOG00000018441)	slc25a28 (ENSGMOG00000011952) #16	nkx3.3 (ENSGMOG00000031636)	nkx2.3 (ENSGMOG00000035037) #17	got1 (ENSGMOG00000018387) ##18	ENSGMOG00000025126 #19	HPSE2 (ENSGMOG00000018343) #22	hps1 (ENSGMOG00000018315) #23	st3gal7 (ENSGMOG00000026694)	ENSGMOG00000022190 #37	morn4 (ENSGMOG00000033836) #35	ENSGMOG00000027846	ENSGMOG00000027692	ENSGMOG00000018219	ENSGMOG00000018205	ENSGMOG00000025467	ENSGMOG00000018157	ENSGMOG00000018146 #13	ENSGMOG00000018132 #14	ENSGMOG00000018120	ENSGMOG00000027483	ENSGMOG00000034333
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	9	ENSGT00940000157042.c.a.x #26	ENSGT00390000013726.c #29	ENSGT00390000000134.a.d.b.a.b.a #30	ENSGT00940000160608 #31	ENSGT00940000165757.c.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375 #33	ENSGT00730000112219	ENSGT00950000182926.b.d.a.a.b	ENSGT00530000064017.a	ENSGT00940000157049.c #16	ENSGT00940000165452.a	ENSGT00940000157556.a.b #17	ENSGT00950000183082.b.b.a.a ##18	ENSGT00940000157525.b #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a	ENSGT00940000157331.b.b	ENSGT00940000153408.A	ENSGT00950000183045.A.a.b	ENSGT00940000157134	ENSGT00390000009790	ENSGT00940000155064	ENSGT00390000017590	ENSGT00940000166866
Salmoninae	ANCESTRAL SPECIES	235	ENSGT00390000013726.c #29	ENSGT00390000000134.a.d.b.a.b.a #30	ENSGT00940000160608.e #31	ENSGT00940000165757.c.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #33	ENSGT00730000112219	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #16	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #17	ENSGT00950000183082.b.b.a.a.d.a ##18	ENSGT00940000157525.b.c #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #33	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #16	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #17	ENSGT00950000183082.b.b.a.a.d.b ##18	ENSGT00940000157525.b.d #19	ENSGT00390000004874.a.a.ub #22	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00390000013726.c #29	ENSGT00390000000134.a.d.b.a.b.a #30	ENSGT00940000160608.e #31	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #33	ENSGT00730000112219	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #16	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #17	ENSGT00950000183082.b.b.a.a.d.a ##18	ENSGT00940000157525.b.c #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.b	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.b	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc	ENSGT00940000168119.e.b	ENSGT00940000153769.C
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000157042.c.a.x #26	ENSGT00390000013726.c #29	ENSGT00390000000134.a.d.b.a.b.a #30	ENSGT00940000160608.e #31	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #33	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #16	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #17	ENSGT00950000183082.b.b.a.a.d.a ##18	ENSGT00940000157525.b.c #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.b	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.a.a	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc	ENSGT00940000168119.e.b	ENSGT00940000153769.C
River trout	MODERN SPECIES	9	LOXL4 (ENSSTUG00000029733) #26	CRTAC1 (ENSSTUG00000029788) #29	golga7ba (ENSSTUG00000030070) #30	sfrp5 (ENSSTUG00000030084) #31	zgc:171482 (ENSSTUG00000030120)	ENSSTUG00000030137	marveld1 (ENSSTUG00000030144) #33	pi4k2a (ENSSTUG00000030160) #36	ENSSTUG00000030263	ENSSTUG00000030279	slc25a28 (ENSSTUG00000030300) #16	nkx3.3 (ENSSTUG00000030314)	nkx2.3 (ENSSTUG00000030317) #17	got1 (ENSSTUG00000030324) ##18	CNNM1 (ENSSTUG00000030339) #19	HPSE2 (ENSSTUG00000033415) #22	hps1 (ENSSTUG00000033428) #23	ENSSTUG00000033539	ENSSTUG00000033530	slit1a (ENSSTUG00000033922)	ARHGAP19 (ENSSTUG00000045255)	XPO5 (ENSSTUG00000045278)	ENSSTUG00000045608	khdrbs2 (ENSSTUG00000045622)	prim2 (ENSSTUG00000045651)	rab23 (ENSSTUG00000045730)	ENSSTUG00000045744	bag2 (ENSSTUG00000045751)	ENSSTUG00000045759	DST (ENSSTUG00000046156)	ENSSTUG00000049858
Atlantic salmon	MODERN SPECIES		ENSSSAG00000113491	ENSSSAG00000116855	ENSSSAG00000000967 #30	ENSSSAG00000085188	sfrp5 (ENSSSAG00000122261) #31	zgc:171482 (ENSSSAG00000000977)	ENSSSAG00000120201	ENSSSAG00000075457 #36	pgam1 (ENSSSAG00000001006)	ENSSSAG00000001009	slc25a28 (ENSSSAG00000096756) #16	nkx3.3 (ENSSSAG00000001020)	nkx2-3 (ENSSSAG00000001022) #17	got1 (ENSSSAG00000075564) ##18	CNNM1 (ENSSSAG00000075572) #19	HPSE2 (ENSSSAG00000114675) #22	hps1 (ENSSSAG00000001071) #23	ENSSSAG00000093017	ENSSSAG00000113366	ENSSSAG00000088082	ENSSSAG00000001168	ARHGAP19 (ENSSSAG00000001541)	ENSSSAG00000077679	ENSSSAG00000001853	KHDRBS2 (ENSSSAG00000001861)	prim2 (ENSSSAG00000001875)	rab23 (ENSSSAG00000092471)	bag2 (ENSSSAG00000001893)	ENSSSAG00000001900	DST (ENSSSAG00000002545)	ENSSSAG00000042902
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00390000013726.c #29	ENSGT00390000000134.a.d.b.a.b.a #30	ENSGT00940000160608.e #31	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #33	ENSGT00730000112219	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #16	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #17	ENSGT00950000183082.b.b.a.a.d.a ##18	ENSGT00940000157525.b.c #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.a.a	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.b	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc	ENSGT00940000168119.e.b	ENSGT00940000153769.C
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00940000157042.c.a.x #26	ENSGT00390000013726.c #29	ENSGT00390000000134.a.d.b.a.b.a #30	ENSGT00940000160608.e #31	ENSGT00940000165757.c.a.a	ENSGT00940000165757.d.m.b	ENSGT00510000049375.h #33	ENSGT00390000010434.b.d.a #36	ENSGT00950000182926.b.d.a.a.b.g	ENSGT00530000064017.a.e	ENSGT00940000157049.c.a #16	ENSGT00940000165452.a.g	ENSGT00940000157556.a.b.e #17	ENSGT00950000183082.b.b.a.a.d.a ##18	ENSGT00940000157525.b.c #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.a.a	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.b	ENSGT00950000183045.A.a.b	ENSGT00940000157134.g	ENSGT00390000009790.c	ENSGT00940000155064.m	ENSGT00390000017590.c	ENSGT00940000166866.c	ENSGT00940000155008.C.pc	ENSGT00940000168119.e.b	ENSGT00940000153769.C
Coho salmon	MODERN SPECIES	2	zgc:123010 (ENSOKIG00005002515)	LOXL4 (ENSOKIG00005002470) #26	CRTAC1 (ENSOKIG00005002299) #29	golga7ba (ENSOKIG00005002166) #30	sfrp5 (ENSOKIG00005002138) #31	zgc:171482 (ENSOKIG00005002110)	marveld1 (ENSOKIG00005002094) #33	PI4K2A (ENSOKIG00005002051) #36	ENSOKIG00005002018	ENSOKIG00005001992	slc25a28 (ENSOKIG00005001976) #16	nkx3.3 (ENSOKIG00005001963)	nkx2.3 (ENSOKIG00005001956) #17	got1 (ENSOKIG00005046953) ##18	CNNM1 (ENSOKIG00005046942) #19	HPSE2 (ENSOKIG00005046923) #22	hps1 (ENSOKIG00005046906) #23	ENSOKIG00005046894	ENSOKIG00005046888	slit1a (ENSOKIG00005046443)	ARHGAP19 (ENSOKIG00005046354)	XPO5 (ENSOKIG00005046247)	ENSOKIG00005046187	khdrbs2 (ENSOKIG00005046157)	prim2 (ENSOKIG00005046100)	rab23 (ENSOKIG00005046082)	bag2 (ENSOKIG00005046067)	ENSOKIG00005046062	ENSOKIG00005046036	DST (ENSOKIG00005041527)	ENSOKIG00005041061
Chinook salmon	MODERN SPECIES		LOXL4 (ENSOTSG00005034720) #26	CRTAC1 (ENSOTSG00005034724) #29	golga7ba (ENSOTSG00005034732) #30	sfrp5 (ENSOTSG00005034735) #31	zgc:171482 (ENSOTSG00005034736)	ENSOTSG00005034738	marveld1 (ENSOTSG00005034739) #33	pi4k2a (ENSOTSG00005034743) #36	ENSOTSG00005034757	ENSOTSG00005034758	slc25a28 (ENSOTSG00005034771) #16	nkx3.3 (ENSOTSG00005034773)	nkx2.3 (ENSOTSG00005034778) #17	got1 (ENSOTSG00005034780) ##18	CNNM1 (ENSOTSG00005034781) #19	HPSE2 (ENSOTSG00005034782) #22	hps1 (ENSOTSG00005005581) #23	ENSOTSG00005005582	ENSOTSG00005005583	ENSOTSG00005005584	ARHGAP19 (ENSOTSG00005005585)	XPO5 (ENSOTSG00005005617)	ENSOTSG00005007655	khdrbs2 (ENSOTSG00005007669)	prim2 (ENSOTSG00005007670)	rab23 (ENSOTSG00005007673)	bag2 (ENSOTSG00005007675)	ENSOTSG00005007677	DST (ENSOTSG00005007761)	ENSOTSG00005011699	ENSOTSG00005011701
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000062644	sfrp5 (ENSOMYG00000021969) #31	zgc:171482 (ENSOMYG00000021987)	ENSOMYG00000050779	ENSOMYG00000062940	marveld1 (ENSOMYG00000021995) #33	ENSOMYG00000055216	ENSOMYG00000022064 #36	ENSOMYG00000022339	ENSOMYG00000022351	slc25a28 (ENSOMYG00000022375) #16	nkx3.3 (ENSOMYG00000022398)	nkx2.3 (ENSOMYG00000022417) #17	got1 (ENSOMYG00000022428) ##18	CNNM1 (ENSOMYG00000022440) #19	HPSE2 (ENSOMYG00000022482) #22	hps1 (ENSOMYG00000022522) #23	ENSOMYG00000022546	ENSOMYG00000022554	ENSOMYG00000024345	ENSOMYG00000054411	ARHGAP19 (ENSOMYG00000034469)	ENSOMYG00000034753	ENSOMYG00000056476	KHDRBS2 (ENSOMYG00000035964)	ENSOMYG00000063102	prim2 (ENSOMYG00000036018)	ENSOMYG00000051765	rab23 (ENSOMYG00000036101)	bag2 (ENSOMYG00000071427)	ENSOMYG00000054877
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1163											ENSHHUG00000003480	nkx3.3 (ENSHHUG00000003474)	nkx2.3 (ENSHHUG00000003468) #17	got1 (ENSHHUG00000003443) ##18	ENSHHUG00000003432	ENSHHUG00000003429 #22
Huchen	MODERN SPECIES	1252										ENSHHUG00000023326	nkx3.3 (ENSHHUG00000023327)	nkx2.3 (ENSHHUG00000023329) #17	got1 (ENSHHUG00000023333) ##18	ENSHHUG00000023347	CNNM1 (ENSHHUG00000023364) #19	HPSE2 (ENSHHUG00000023373) #22	hps1 (ENSHHUG00000023384) #23	morn4 (ENSHHUG00000023402) #35	ENSHHUG00000023406	slit1a (ENSHHUG00000023415)
Northern pike	MODERN SPECIES	5	golga7ba (ENSELUG00000021864) #30	sfrp5 (ENSELUG00000021837) #31	zgc:171482 (ENSELUG00000021817)	ENSELUG00000030584	ENSELUG00000021778	marveld1 (ENSELUG00000021766) #33	ENSELUG00000021760	pi4k2a (ENSELUG00000021744) #36	ENSELUG00000021705	ENSELUG00000021674	slc25a28 (ENSELUG00000021579) #16	nkx3.3 (ENSELUG00000021562)	nkx2.3 (ENSELUG00000021555) #17	got1 (ENSELUG00000021545) ##18	CNNM1 (ENSELUG00000021501) #19	HPSE2 (ENSELUG00000021468) #22	hps1 (ENSELUG00000021455) #23	morn4 (ENSELUG00000021411) #35	ENSELUG00000021368	slit1a (ENSELUG00000021342)	ARHGAP19 (ENSELUG00000021067)	XPO5 (ENSELUG00000021008)	khdrbs2 (ENSELUG00000020898)	prim2 (ENSELUG00000020852)	rab23 (ENSELUG00000020788)	bag2 (ENSELUG00000031955)	ENSELUG00000020757	ENSELUG00000031724	ENSELUG00000028331	DST (ENSELUG00000020586)	ENSELUG00000020422
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a.ub #22
Salmoninae	ANCESTRAL SPECIES	235	ENSGT00940000157556.a.b.e #17	ENSGT00950000183082.b.b.a.a.d.a ##18	ENSGT00940000157525.b.c #19	ENSGT00390000004874.a.a.tb #22	ENSGT00390000015298 #23	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #33	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #16	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #17	ENSGT00950000183082.b.b.a.a.d.b ##18	ENSGT00940000157525.b.d #19	ENSGT00390000004874.a.a.ub #22	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00940000162611.a.a.b.a	ENSGT00940000154965.A.b	ENSGT00940000157322.b.a.e.a.b	ENSGT00940000157331.b.b	ENSGT00940000153408.A.ab.a.a
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #33	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #16	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #17	ENSGT00950000183082.b.b.a.a.d.b.a.b ##18	ENSGT00950000183082.b.b.a.a.d.b.b ##18	ENSGT00940000157525.b.d #19	ENSGT00390000004874.a.a.ub #22	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d	ENSGT00940000166866.d	ENSGT00940000155008.C.qc	ENSGT00940000168119.e.a
Salmo	ANCESTRAL SPECIES	38	ENSGT00940000165701.g	ENSGT00990000204854.d	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.b.b	ENSGT00940000163723.A.f.a	ENSGT00510000049375.g #33	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.a.a #16	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #17	ENSGT00950000183082.b.b.a.a.d.b.a.b ##18	ENSGT00950000183082.b.b.a.a.d.b.b ##18	ENSGT00940000157525.b.d #19	ENSGT00390000004874.a.a.ub #22	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d	ENSGT00940000166866.d	ENSGT00940000155008.C.qc	ENSGT00940000168119.e.a
River trout	MODERN SPECIES	1	ENSSTUG00000018149	ENSSTUG00000018776	kcnk1b (ENSSTUG00000018792)	zgc:171482 (ENSSTUG00000018804)	ENSSTUG00000018821	ENSSTUG00000018828	marveld1 (ENSSTUG00000018853) #33	pi4k2a (ENSSTUG00000018858) #36	ENSSTUG00000018882	ENSSTUG00000018905	slc25a28 (ENSSTUG00000018986) #16	nkx3.3 (ENSSTUG00000019026)	nkx2.3 (ENSSTUG00000019037) #17	got1 (ENSSTUG00000019061) ##18	CNNM1 (ENSSTUG00000019181) #19	HPSE2 (ENSSTUG00000019224) #22	st3gal7 (ENSSTUG00000019350)	ENSSTUG00000030526 #37	morn4 (ENSSTUG00000030530) #35	ENSSTUG00000030543	ENSSTUG00000030548	slit1a (ENSSTUG00000030646)	ENSSTUG00000033390	XPO5 (ENSSTUG00000033420)	ENSSTUG00000033953	khdrbs2 (ENSSTUG00000033974)	rab23 (ENSSTUG00000033997)	bag2 (ENSSTUG00000034015)	ENSSTUG00000034022	DST (ENSSTUG00000034217)	ENSSTUG00000038772
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000110104	ENSSSAG00000099101	ENSSSAG00000088446 #33	ENSSSAG00000083955	ENSSSAG00000075553	ENSSSAG00000101173	ENSSSAG00000122151 #36	ENSSSAG00000105715	slc25a28 (ENSSSAG00000075557) #16	ENSSSAG00000090773	nkx3.3 (ENSSSAG00000111355)	nkx2.3 (ENSSSAG00000091368) #17	ENSSSAG00000090388	got1 (ENSSSAG00000117439) ##18	CNNM1 (ENSSSAG00000001038) #19	HPSE2 (ENSSSAG00000001058) #22	ENSSSAG00000115096	st3gal7 (ENSSSAG00000075576)	ENSSSAG00000075577 #37	morn4 (ENSSSAG00000075578) #35	ENSSSAG00000088434	ENSSSAG00000121541	ENSSSAG00000075660	ENSSSAG00000001603	KHDRBS2 (ENSSSAG00000077738)	PRIM2 (ENSSSAG00000077752)	rab23 (ENSSSAG00000083099)	ENSSSAG00000109425	bag2 (ENSSSAG00000077777)	ENSSSAG00000077783	DST (ENSSSAG00000077926)
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.a.b	ENSGT01060000253683	ENSGT00510000049375.g #33	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #16	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #17	ENSGT00950000183082.b.b.a.a.d.b.b ##18	ENSGT00940000157525.b.d #19	ENSGT00390000004874.a.a.ub #22	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a.b	ENSGT00970000193390.c.a.b.a.a.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d	ENSGT00940000166866.d	ENSGT00940000155008.C.qc
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000157846.c.c	ENSGT00950000182836.b.b.b.b.l	ENSGT00940000165701.g	ENSGT00940000155293.a.a.i	ENSGT00940000165757.c.a.b	ENSGT01060000253683	ENSGT00510000049375.g #33	ENSGT00390000010434.b.d.b #36	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00530000064017.a.f	ENSGT00940000157049.c.b.b #16	ENSGT00940000165452.a.h	ENSGT00940000157556.a.b.f #17	ENSGT00950000183082.b.b.a.a.d.b.b ##18	ENSGT00940000157525.b.d #19	ENSGT00390000004874.a.a.ub #22	ENSGT00940000165889	ENSGT00940000153956.b #37	ENSGT00730000111173.g #35	ENSGT00940000162611.a.a.b.b	ENSGT00940000154965.A.a	ENSGT00940000157322.b.a.e.b	ENSGT00970000193390.c.a.b.a.a.a.b	ENSGT00970000193390.c.a.b.a.a.a.a.a	ENSGT00940000153408.A.`b	ENSGT00940000157134.h.a	ENSGT00390000009790.d	ENSGT00940000155064.n	ENSGT00390000017590.d	ENSGT00940000166866.d	ENSGT00940000155008.C.qc
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	17	NRXN1 (ENSOTSG00005023915)	ENSOTSG00005025370	ENSOTSG00005025372	erlec1 (ENSOTSG00005025375)	PSME4 (ENSOTSG00005026777)	ENSOTSG00005027450	ENSOTSG00005027451	THBS2 (ENSOTSG00005027465)	agpat4 (ENSOTSG00005029064)	ENSOTSG00005029107	kcnk1b (ENSOTSG00005034403)	nkx3.3 (ENSOTSG00005034405)	nkx2.3 (ENSOTSG00005034407) #17	got1 (ENSOTSG00005034411) ##18	CNNM1 (ENSOTSG00005034416) #19	HPSE2 (ENSOTSG00005034422) #22	ENSOTSG00005034426 #37	st3gal7 (ENSOTSG00005034429)	morn4 (ENSOTSG00005034430) #35	ENSOTSG00005034432	slit1a (ENSOTSG00005034436)	XPO5 (ENSOTSG00005034518)	ENSOTSG00005034611	cpn1 (ENSOTSG00005034612) #10	rab23 (ENSOTSG00005002619)	bag2 (ENSOTSG00005002622)	ENSOTSG00005002625	DST (ENSOTSG00005002828)	ENSOTSG00005011804	COL21A1 (ENSOTSG00005011805)	bmp5 (ENSOTSG00005011808)
Chinook salmon	MODERN SPECIES	3005	ENSOTSG00005039705	ENSOTSG00005039707	pi4k2a (ENSOTSG00005039727) #36	marveld1 (ENSOTSG00005039801) #33	ENSOTSG00005039803	ENSOTSG00005039814	ENSOTSG00005039818	pi4k2a (ENSOTSG00005039829) #36	ENSOTSG00005039941	ENSOTSG00005039943	slc25a28 (ENSOTSG00005039947) #16	nkx3.3 (ENSOTSG00005039949)	nkx2.3 (ENSOTSG00005039950) #17	got1 (ENSOTSG00005039951) ##18	CNNM1 (ENSOTSG00005039953) #19	HPSE2 (ENSOTSG00005039955) #22	ENSOTSG00005039960 #37	st3gal7 (ENSOTSG00005039961)	morn4 (ENSOTSG00005039963) #35	ENSOTSG00005039967	ENSOTSG00005039966	slit1a (ENSOTSG00005039978)
Coho salmon	MODERN SPECIES	17	agpat4 (ENSOKIG00005012600)	ENSOKIG00005012935	ENSOKIG00005018075	kcnk1b (ENSOKIG00005018080)	ENSOKIG00005018083	ENSOKIG00005018091	MARVELD1 (ENSOKIG00005018097) #33	ENSOKIG00005018101 #36	ENSOKIG00005018154	ENSOKIG00005018168	slc25a28 (ENSOKIG00005018176) #16	nkx3.3 (ENSOKIG00005018199)	nkx2.3 (ENSOKIG00005018206) #17	got1 (ENSOKIG00005018218) ##18	CNNM1 (ENSOKIG00005018273) #19	HPSE2 (ENSOKIG00005018314) #22	ENSOKIG00005018361	st3gal7 (ENSOKIG00005018367)	ENSOKIG00005018379 #37	morn4 (ENSOKIG00005018386) #35	ENSOKIG00005018396	ENSOKIG00005018414	SLIT1 (ENSOKIG00005018648)	ENSOKIG00005023662	XPO5 (ENSOKIG00005023684)	ENSOKIG00005023791	ENSOKIG00005023811	ENSOKIG00005023848	ENSOKIG00005023920	KHDRBS2 (ENSOKIG00005024014)	PRIM2 (ENSOKIG00005024043)
Rainbow trout	MODERN SPECIES	12	agpat4 (ENSOMYG00000037674)	ENSOMYG00000038592	kcnk1b (ENSOMYG00000043033)	ENSOMYG00000048427	ENSOMYG00000071543	ENSOMYG00000043047 #33	ENSOMYG00000043052 #36	ENSOMYG00000043076	ENSOMYG00000055904	slc25a28 (ENSOMYG00000043085) #16	nkx3.3 (ENSOMYG00000043095)	nkx2.3 (ENSOMYG00000043096) #17	got1 (ENSOMYG00000043106) ##18	ENSOMYG00000043114	CNNM1 (ENSOMYG00000043115) #19	HPSE2 (ENSOMYG00000043124) #22	ENSOMYG00000050654	st3gal7 (ENSOMYG00000043139)	ENSOMYG00000043152 #35	ENSOMYG00000043163	ENSOMYG00000049940	ENSOMYG00000043157	ENSOMYG00000043182	ENSOMYG00000054489	ENSOMYG00000056488	ENSOMYG00000043343	ENSOMYG00000057240	ENSOMYG00000043263	ENSOMYG00000054415	ENSOMYG00000063482	ENSOMYG00000059687
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2017																ENSHHUG00000024375 #22	st3gal7 (ENSHHUG00000024377)	ENSHHUG00000024382 #37	morn4 (ENSHHUG00000024387) #35	ENSHHUG00000024438	ENSHHUG00000024446	ENSHHUG00000024440	slit1a (ENSHHUG00000024475)
Huchen	MODERN SPECIES	9019																ENSHHUG00000003085 #22
Osteoglossiformes	ANCESTRAL SPECIES	268	ENSGT00390000013106	ENSGT00940000155032.k	ENSGT00390000015287	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00390000010434.b.b #36	ENSGT00970000193827.a	ENSGT00510000049375.a #33	ENSGT00940000165757.a.a	ENSGT00940000160608.c #31	ENSGT00390000013726.c #29	ENSGT00940000157042.c.a #26	ENSGT00940000164861	ENSGT00940000157049.a #16	ENSGT00940000165452.a	ENSGT00940000157556.a.a.b #17	ENSGT00390000004874.a.a #22	ENSGT00390000015298 #23	ENSGT00940000165889	ENSGT00940000168493
Asian bonytongue	MODERN SPECIES	23	ENSSFOG00015016277	pi4k2a (ENSSFOG00015016255) #36	ENSSFOG00015016242	marveld1 (ENSSFOG00015016233) #33	ENSSFOG00015029493	ENSSFOG00015016149	sfrp5 (ENSSFOG00015016130) #31	CRTAC1 (ENSSFOG00015016089) #29	ENSSFOG00015016044 #26	pyroxd2 (ENSSFOG00015015984)	ENSSFOG00015015940	slc25a28 (ENSSFOG00015015925) #16	nkx3.3 (ENSSFOG00015032059)	ENSSFOG00015032867 #17	got1 (ENSSFOG00015015891) ##18	HPSE2 (ENSSFOG00015015866) #22	hps1 (ENSSFOG00015015808) #23	ENSSFOG00015015789	ENSSFOG00015029523	ENSSFOG00015031827	ENSSFOG00015015746	slit1a (ENSSFOG00015015642)	ENSSFOG00015015619	ENSSFOG00015015558	cutc (ENSSFOG00015025714) #13	cox15 (ENSSFOG00015015485) #14	KCNIP2 (ENSSFOG00015015460)	ENSSFOG00015032288	ARMH3 (ENSSFOG00015015360)	HPS6 (ENSSFOG00015026018)	ENSSFOG00015015273
P. kingsleyae	MODERN SPECIES	194	si:ch211-198a12.6 (ENSPKIG00000009261)	ENSPKIG00000009243	selenou1a (ENSPKIG00000009214)	sfxn3 (ENSPKIG00000009170)	PDZD7 (ENSPKIG00000009127)	ENSPKIG00000009055	sufu (ENSPKIG00000008960)	cyp1b1 (ENSPKIG00000008930)	ENSPKIG00000008860	CRTAC1 (ENSPKIG00000008679) #29	LOXL4 (ENSPKIG00000008573) #26	pyroxd2 (ENSPKIG00000008509)	slc25a28 (ENSPKIG00000008475) #16	nkx3.3 (ENSPKIG00000008463)	ENSPKIG00000008449 #17	HPSE2 (ENSPKIG00000008417) #22	hps1 (ENSPKIG00000008360) #23	st3gal7 (ENSPKIG00000008318)	ENSPKIG00000008291	ENSPKIG00000008260	ENSPKIG00000008231	ENSPKIG00000008212	ENSPKIG00000008056	cutc (ENSPKIG00000007956) #13	cox15 (ENSPKIG00000007901) #14	KCNIP2 (ENSPKIG00000007860)	ENSPKIG00000007848	ENSPKIG00000007738	ENSPKIG00000007675	oga (ENSPKIG00000007634)	npm3 (ENSPKIG00000007609)
Spotted gar	MODERN SPECIES	671	sfrp5 (ENSLOCG00000008904) #31	golga7ba (ENSLOCG00000008912) #30	crtac1a (ENSLOCG00000008921) #29	ENSLOCG00000008944 #27	LOXL4 (ENSLOCG00000008953) #26	zgc:123010 (ENSLOCG00000008967)	PYROXD2 (ENSLOCG00000008976) #25	atpv0e2 (ENSLOCG00000008982)	ENSLOCG00000008992	ENTPD7 (ENSLOCG00000009002) #15	slc25a28 (ENSLOCG00000009024) #16	nkx3.3 (ENSLOCG00000009031)	nkx2.3 (ENSLOCG00000009050) #17	got1 (ENSLOCG00000009054) #18	CNNM1 (ENSLOCG00000009070) #19	HPSE2 (ENSLOCG00000009078) #22	hps1 (ENSLOCG00000009087) #23	st3gal7 (ENSLOCG00000009100)	ENSLOCG00000009110 #37	ddx21 (ENSLOCG00000009123)	irf1a (ENSLOCG00000009136)	kifbp (ENSLOCG00000009142)	vps26a (ENSLOCG00000009150)	supv3l1 (ENSLOCG00000009159)	hkdc1 (ENSLOCG00000009177)	hk1 (ENSLOCG00000009187)	tacr2 (ENSLOCG00000009218)	tspan15 (ENSLOCG00000009224)	rufy2 (ENSLOCG00000009235)	HNRNPH3 (ENSLOCG00000009247)	pbld (ENSLOCG00000009266)
Reedfish	MODERN SPECIES	10	ENSECRG00000000944 #27	LOXL4 (ENSECRG00000000973) #26	zgc:123010 (ENSECRG00000001005)	pyroxd2 (ENSECRG00000001046)	ATP6V0E2 (ENSECRG00000001091)	ENSECRG00000001109	ENTPD7 (ENSECRG00000001134) #15	slc25a28 (ENSECRG00000001160) #16	slc25a28 (ENSECRG00000001191) #16	ENSECRG00000001202	nkx3.3 (ENSECRG00000001214)	ENSECRG00000001225 #17	ENSECRG00000001228	got1 (ENSECRG00000001233) #18	CNNM1 (ENSECRG00000001361) #19	HPSE2 (ENSECRG00000001676) #22	hps1 (ENSECRG00000001819) #23	st3gal7 (ENSECRG00000001866)	ANKRD2 (ENSECRG00000001895) #37	hoga1 (ENSECRG00000001937)	morn4 (ENSECRG00000001966) #35	ENSECRG00000001980	ENSECRG00000001987	ENSECRG00000001996	slit1a (ENSECRG00000002016)	ARHGAP19 (ENSECRG00000002058)	ENSECRG00000002079	ENSECRG00000002106	ENSECRG00000002141	cutc (ENSECRG00000002156) #13	cox15 (ENSECRG00000002187) #14
Elephant shark	MODERN SPECIES	1723								ENSCMIG00000015126	ENTPD7 (ENSCMIG00000015142) #15	slc25a28 (ENSCMIG00000015179) #16	ENSCMIG00000015182	ENSCMIG00000015185	nkx2.3 (ENSCMIG00000015187) #17	got1 (ENSCMIG00000015190) #18	ENSCMIG00000015216 #19	HPSE2 (ENSCMIG00000015220) #22	cnnm2a (ENSCMIG00000015232)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a #22
Hagfish	MODERN SPECIES	1373						ENSEBUG00000000517	ENSEBUG00000003213	ENSEBUG00000010111	ENSEBUG00000013048	ENSEBUG00000000671	STK32B (ENSEBUG00000001295)	ENSEBUG00000003569	qdprb.1 (ENSEBUG00000007458)	ENSEBUG00000011147	ENSEBUG00000015958	ENSEBUG00000010826 #22	praf2 (ENSEBUG00000001867)	ENSEBUG00000011531	NAA80 (ENSEBUG00000006165)	ENSEBUG00000009734 ##22	ENSEBUG00000016527	ENSEBUG00000013073
Ciona	ANCESTRAL SPECIES																	ENSGT00390000004874.a.a #22
Ciona intestinalis	DUPLICATION
Ciona intestinalis	MODERN SPECIES	405																ENSCING00000021104 #22
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000022980	ENSCING00000005428	ENSCING00000005393	ENSCING00000005398	ENSCING00000005389	ENSCING00000013659	ENSCING00000005391	ENSCING00000000241	ENSCING00000021251	ENSCING00000022653	ENSCING00000023249	ENSCING00000000245	ENSCING00000020274	ENSCING00000013662	ENSCING00000000219	ENSCING00000020193 #22	ENSCING00000014449	ENSCING00000018971	ENSCING00000018988	ENSCING00000003856	ENSCING00000014446	ENSCING00000020332	ENSCING00000014447	ENSCING00000024890	ENSCING00000023606	ENSCING00000018023	ENSCING00000020302	ENSCING00000023787	ENSCING00000020729	ENSCING00000023473	ENSCING00000024769
Chordata	ANCESTRAL SPECIES																	ENSGT00390000004874.a.b ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000004874.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	242					ENSGT00940000165395	ENSGT00390000015494	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT01000000215531	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22
Euteleostomi	ANCESTRAL SPECIES	329					ENSGT00940000165395	ENSGT00390000015494	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102	ENSGT01100000263544.c.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES	524											ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22
Tetrapoda	ANCESTRAL SPECIES	25	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b	ENSGT00940000159393
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00970000194080	ENSGT00940000157329.u.b	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a
Lepidosauria	ANCESTRAL SPECIES	25	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00970000194080	ENSGT00940000157329.u.b	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.v	ENSGT00940000157329.u.b	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b	ENSGT00940000159393
Laterata	ANCESTRAL SPECIES	9	ENSGT00940000160856.k.a	ENSGT00940000160856.l	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.v	ENSGT00940000157329.u.b	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b	ENSGT00940000159393
Common wall lizard	MODERN SPECIES	17	KLHL8 (ENSPMRG00000020411)	ENSPMRG00000020436	ENSPMRG00000020446	SLC10A6 (ENSPMRG00000020457)	PTPN13 (ENSPMRG00000020746)	MAPK10 (ENSPMRG00000022109)	ARHGAP24 (ENSPMRG00000022126)	WDFY3 (ENSPMRG00000022307)	CDS1 (ENSPMRG00000022811)	NKX6-1 (ENSPMRG00000022848)	ENSPMRG00000022850	GPAT3 (ENSPMRG00000022855)	ABRAXAS1 (ENSPMRG00000022861)	ENSPMRG00000022864	HELQ (ENSPMRG00000022889)	HPSE (ENSPMRG00000022968) ##22	COQ2 (ENSPMRG00000022974)	ENSPMRG00000022978	ENSPMRG00000022982	PLAC8 (ENSPMRG00000022988)	COPS4 (ENSPMRG00000022993)	LIN54 (ENSPMRG00000023000)	ENSPMRG00000023008	SEC31A (ENSPMRG00000023029)	SCD5 (ENSPMRG00000023053)	TMEM150C (ENSPMRG00000023061)	ENOPH1 (ENSPMRG00000023067)	HNRNPDL (ENSPMRG00000023070)	HNRNPD (ENSPMRG00000023075)	ENSPMRG00000023083	ATP5F1D (ENSPMRG00000023087)
Argentine black and white tegu	MODERN SPECIES	11	HSD17B13 (ENSSMRG00000012933)	ENSSMRG00000012932	KLHL8 (ENSSMRG00000012931)	AFF1 (ENSSMRG00000012930)	SLC10A6 (ENSSMRG00000012929)	PTPN13 (ENSSMRG00000012928)	MAPK10 (ENSSMRG00000012926)	ARHGAP24 (ENSSMRG00000012925)	WDFY3 (ENSSMRG00000012924)	CDS1 (ENSSMRG00000012923)	NKX6-1 (ENSSMRG00000012922)	GPAT3 (ENSSMRG00000012919)	ABRAXAS1 (ENSSMRG00000012918)	ENSSMRG00000012917	HELQ (ENSSMRG00000012916)	HPSE (ENSSMRG00000012915) ##22	COQ2 (ENSSMRG00000012914)	ENSSMRG00000012913	ENSSMRG00000012912	ENSSMRG00000012911	ENSSMRG00000012910	COPS4 (ENSSMRG00000012909)	LIN54 (ENSSMRG00000012908)	SEC31A (ENSSMRG00000012907)	SCD5 (ENSSMRG00000012906)	TMEM150C (ENSSMRG00000012905)	ENOPH1 (ENSSMRG00000012904)	HNRNPDL (ENSSMRG00000012903)	HNRNPD (ENSSMRG00000012902)	ENSSMRG00000012901	RASGEF1B (ENSSMRG00000012899)
Toxicofera	ANCESTRAL SPECIES	12	ENSGT00960000189796	ENSGT00940000160856.k.a	ENSGT00940000160856.l	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.v.a	ENSGT00970000194080	ENSGT00940000157329.u.b	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b
Elapidae	ANCESTRAL SPECIES	11	ENSGT00730000111375	ENSGT00390000017405	ENSGT00960000189796	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b.h	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b.o	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.v.a	ENSGT00940000157329.u.b.c.b	ENSGT00970000194080	ENSGT00940000157329.u.b.d	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Indian cobra	MODERN SPECIES	3	HSD17B11 (ENSNNAG00000006204)	ENSNNAG00000006173	KLHL8 (ENSNNAG00000006133)	ENSNNAG00000006105	PTPN13 (ENSNNAG00000005903)	MAPK10 (ENSNNAG00000005385)	ARHGAP24 (ENSNNAG00000005314)	WDFY3 (ENSNNAG00000005015)	CDS1 (ENSNNAG00000004940)	NKX6-1 (ENSNNAG00000004926)	GPAT3 (ENSNNAG00000004882)	ENSNNAG00000004870	ENSNNAG00000004847	ENSNNAG00000004837	HELQ (ENSNNAG00000004810)	HPSE (ENSNNAG00000004794) ##22	COQ2 (ENSNNAG00000004748)	ENSNNAG00000004720	ENSNNAG00000004701	ENSNNAG00000004691	ENSNNAG00000004626	COPS4 (ENSNNAG00000004582)	LIN54 (ENSNNAG00000004551)	SEC31A (ENSNNAG00000004060)	SCD5 (ENSNNAG00000004001)	TMEM150C (ENSNNAG00000016854)	ENOPH1 (ENSNNAG00000016845)	HNRNPDL (ENSNNAG00000016831)	HNRNPD (ENSNNAG00000016809)	RASGEF1B (ENSNNAG00000016793)	ENSNNAG00000016786
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00730000111375	ENSGT00390000017405	ENSGT00960000189796	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b.h	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b.o	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00970000194080
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00730000111375	ENSGT00390000017405	ENSGT00960000189796	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b.h	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b.o	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00970000194080	ENSGT00940000157329.v.a
Eastern brown snake	MODERN SPECIES	9	NUDT9 (ENSPTXG00000011935)	ENSPTXG00000011937	ENSPTXG00000011939	KLHL8 (ENSPTXG00000011940)	AFF1 (ENSPTXG00000011943)	PTPN13 (ENSPTXG00000011947)	MAPK10 (ENSPTXG00000011959)	ARHGAP24 (ENSPTXG00000014492)	WDFY3 (ENSPTXG00000014495)	CDS1 (ENSPTXG00000014496)	ENSPTXG00000014497	GPAT3 (ENSPTXG00000014498)	ABRAXAS1 (ENSPTXG00000014500)	ENSPTXG00000014501	HELQ (ENSPTXG00000014502)	HPSE (ENSPTXG00000014585) ##22	COQ2 (ENSPTXG00000014588)	ENSPTXG00000014589	ENSPTXG00000014591
Mainland tiger snake	MODERN SPECIES	327										GPAT3 (ENSNSUG00000018553)	ENSNSUG00000018552	ENSNSUG00000018551	ENSNSUG00000018550	HELQ (ENSNSUG00000018533)	ENSNSUG00000018532	HPSE (ENSNSUG00000018531) ##22	COQ2 (ENSNSUG00000018530)	ENSNSUG00000018529	ENSNSUG00000018528
Blue-lipped sea krait	MODERN SPECIES	6038																HPSE (ENSLLTG00000014468) ##22	COQ2 (ENSLLTG00000014485)
Lizard	MODERN SPECIES	4	ENSACAG00000012372	KLHL8 (ENSACAG00000012252)	PTPN13 (ENSACAG00000012072)	MAPK10 (ENSACAG00000011795)	ARHGAP24 (ENSACAG00000011711)	ENSACAG00000045031	ENSACAG00000040352	ENSACAG00000045426	ENSACAG00000037692	WDFY3 (ENSACAG00000011422)	CDS1 (ENSACAG00000011274)	ENSACAG00000005787	GPAT3 (ENSACAG00000011022)	ABRAXAS1 (ENSACAG00000042829)	HELQ (ENSACAG00000010842)	HPSE (ENSACAG00000010731) ##22	ENSACAG00000040785	COQ2 (ENSACAG00000010708)	PLAC8 (ENSACAG00000036343)	ENSACAG00000045418	ENSACAG00000028601	ENSACAG00000010690	ENSACAG00000010948	ENSACAG00000036755	LIN54 (ENSACAG00000010548)	ENSACAG00000037629	ENSACAG00000037011	SEC31A (ENSACAG00000010481)	ENSACAG00000041939	TMEM150C (ENSACAG00000043889)	ENOPH1 (ENSACAG00000010419)
tuatara	MODERN SPECIES	1306									KAT6A (ENSSPUG00000014086)	AP3M2 (ENSSPUG00000014053)	PLAT (ENSSPUG00000014038)	GPAT3 (ENSSPUG00000014014)	ABRAXAS1 (ENSSPUG00000014001)	ENSSPUG00000013990	HELQ (ENSSPUG00000013976)	HPSE (ENSSPUG00000013963) ##22	COQ2 (ENSSPUG00000013878)	PLAC8 (ENSSPUG00000013854)	COPS4 (ENSSPUG00000013850)	LIN54 (ENSSPUG00000013838)	ENSSPUG00000013832	ENSSPUG00000013824	SEC31A (ENSSPUG00000013800)	SCD5 (ENSSPUG00000013754)	TMEM150C (ENSSPUG00000013709)	HNRNPDL (ENSSPUG00000013700)	ENOPH1 (ENSSPUG00000013689)	HNRNPD (ENSSPUG00000013677)
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00970000194080	ENSGT00940000157329.u.b	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000016390	ENSGT00940000155211	ENSGT00390000015513.a.a.a	ENSGT00390000015513.a.a.b	ENSGT00940000153321.b.b	ENSGT00940000153424.a.b	ENSGT00900000143042	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000160325.a	ENSGT00940000158010	ENSGT00940000154426	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090	ENSGT00390000003175.a.b	ENSGT00940000161474.b.a	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b
Aves	ANCESTRAL SPECIES	51						ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615
Neognathae	ANCESTRAL SPECIES	41						ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b
Golden eagle	MODERN SPECIES		PRMT9 (ENSACCG00020004032)	ARHGAP10 (ENSACCG00020004010)	NR3C2 (ENSACCG00020003983)	DCLK2 (ENSACCG00020003952)	MAB21L2 (ENSACCG00020003910)	LRBA (ENSACCG00020003293)	PPM1K (ENSACCG00020002219)	WDFY3 (ENSACCG00020002187)	NKX6-1 (ENSACCG00020002076)	CDS1 (ENSACCG00020001800)	ENSACCG00020001530	ENSACCG00020001498	ABRAXAS1 (ENSACCG00020001477)	ENSACCG00020001460	HELQ (ENSACCG00020001377)	HPSE (ENSACCG00020001279) ##22	COQ2 (ENSACCG00020001262)	PLAC8 (ENSACCG00020001242)	MKS1 (ENSACCG00020001222)	ABCG2 (ENSACCG00020001203)	PKD2 (ENSACCG00020001186)	SPP1 (ENSACCG00020001167)	IBSP (ENSACCG00020001159)	ENSACCG00020001144	SPARCL1 (ENSACCG00020001124)	NUDT9 (ENSACCG00020001102)	HSD17B11 (ENSACCG00020001036)	KLHL8 (ENSACCG00020000913)	AFF1 (ENSACCG00020000855)	PTPN13 (ENSACCG00020000760)	MAPK10 (ENSACCG00020000508)
Kakapo	MODERN SPECIES	24	PRMT9 (ENSSHBG00005017013)	ARHGAP10 (ENSSHBG00005017004)	NR3C2 (ENSSHBG00005016998)	DCLK2 (ENSSHBG00005016984)	MAB21L2 (ENSSHBG00005016971)	LRBA (ENSSHBG00005012779)	PPM1K (ENSSHBG00005012031)	WDFY3 (ENSSHBG00005011825)	CDS1 (ENSSHBG00005011735)	ENSSHBG00005011718	ENSSHBG00005011685	ENSSHBG00005011661	ABRAXAS1 (ENSSHBG00005011622)	ENSSHBG00005011599	HELQ (ENSSHBG00005011559)	HPSE (ENSSHBG00005011497) ##22	COQ2 (ENSSHBG00005011445)	PLAC8 (ENSSHBG00005011413)	ENSSHBG00005011399	ABCG2 (ENSSHBG00005011359)	PKD2 (ENSSHBG00005010402)	SPP1 (ENSSHBG00005000720)	ENSSHBG00005000710	IBSP (ENSSHBG00005000684)	DMP1 (ENSSHBG00005015505)	SPARCL1 (ENSSHBG00005015499)	NUDT9 (ENSSHBG00005015494)	ENSSHBG00005015489	ENSSHBG00005015484	KLHL8 (ENSSHBG00005015480)	AFF1 (ENSSHBG00005015467)
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00940000156733
Great tit	MODERN SPECIES	23	TMEM184C (ENSPMJG00000008761)	PRMT9 (ENSPMJG00000008752)	ARHGAP10 (ENSPMJG00000008746)	NR3C2 (ENSPMJG00000008745)	DCLK2 (ENSPMJG00000008712)	MAB21L2 (ENSPMJG00000008711)	LRBA (ENSPMJG00000008703)	PPM1K (ENSPMJG00000008662)	WDFY3 (ENSPMJG00000008647)	CDS1 (ENSPMJG00000008432)	ENSPMJG00000008387	ENSPMJG00000008386	ABRAXAS1 (ENSPMJG00000008385)	ENSPMJG00000008384	HELQ (ENSPMJG00000008381)	HPSE (ENSPMJG00000008379) ##22	COQ2 (ENSPMJG00000008378)	PLAC8 (ENSPMJG00000008376)	ENSPMJG00000008375	ABCG2 (ENSPMJG00000008371)	PKD2 (ENSPMJG00000008367)	SPP1 (ENSPMJG00000008342)	ENSPMJG00000008338	ENSPMJG00000008336	IBSP (ENSPMJG00000008335)	DMP1 (ENSPMJG00000008332)	SPARCL1 (ENSPMJG00000008329)	NUDT9 (ENSPMJG00000008327)	ENSPMJG00000008325	ENSPMJG00000008324	KLHL8 (ENSPMJG00000008322)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00940000173785	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00940000156733	ENSGT00940000156801
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00940000173785	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.a.a	ENSGT00940000154778	ENSGT01050000244827.C.c.a.a	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00940000173785	ENSGT00510000046787.e.a	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583
Common canary	MODERN SPECIES	2	TMEM184C (ENSSCAG00000015129)	PRMT9 (ENSSCAG00000015133)	ARHGAP10 (ENSSCAG00000015141)	NR3C2 (ENSSCAG00000015151)	DCLK2 (ENSSCAG00000015163)	LRBA (ENSSCAG00000015169)	MAB21L2 (ENSSCAG00000015187)	PPM1K (ENSSCAG00000015191)	WDFY3 (ENSSCAG00000015228)	CDS1 (ENSSCAG00000015332)	ENSSCAG00000015336	ENSSCAG00000015341	ABRAXAS1 (ENSSCAG00000015343)	ENSSCAG00000015345	HELQ (ENSSCAG00000015353)	HPSE (ENSSCAG00000015375) ##22	COQ2 (ENSSCAG00000015382)	PLAC8 (ENSSCAG00000015390)	ABCG2 (ENSSCAG00000015393)	PKD2 (ENSSCAG00000015406)	ENSSCAG00000015440	ENSSCAG00000015441	ENSSCAG00000015443	IBSP (ENSSCAG00000015445)	ENSSCAG00000000014	ENSSCAG00000000016	NUDT9 (ENSSCAG00000000018)	HSD17B11 (ENSSCAG00000000023)	ENSSCAG00000000061	ENSSCAG00000000343	ENSSCAG00000000347
Zebra finch	MODERN SPECIES	25	HSPA4L (ENSTGUG00000002068)	PLK4 (ENSTGUG00000002083)	MFSD8 (ENSTGUG00000002084)	ABHD18 (ENSTGUG00000002090)	LARP1B (ENSTGUG00000002098)	PGRMC2 (ENSTGUG00000002102)	JADE1 (ENSTGUG00000002104)	SCLT1 (ENSTGUG00000002115)	CDS1 (ENSTGUG00000002118)	NKX6-1 (ENSTGUG00000002130)	ENSTGUG00000002133	ABRAXAS1 (ENSTGUG00000002146)	ENSTGUG00000024201	ENSTGUG00000028005	HELQ (ENSTGUG00000002154)	HPSE (ENSTGUG00000002169) ##22	COQ2 (ENSTGUG00000002188)	PLAC8 (ENSTGUG00000002199)	ABCG2 (ENSTGUG00000002200)	PKD2 (ENSTGUG00000002213)	SPP1 (ENSTGUG00000002233)	ENSTGUG00000023586	IBSP (ENSTGUG00000002236)	ENSTGUG00000022654	SPARCL1 (ENSTGUG00000002242)	NUDT9 (ENSTGUG00000002249)	HSD17B11 (ENSTGUG00000002260)	KLHL8 (ENSTGUG00000002275)	ENSTGUG00000002283	MAML3 (ENSTGUG00000002284)	SCOC (ENSTGUG00000026865)
Medium ground finch	MODERN SPECIES	7	TMEM184C (ENSGFOG00000008844)	PRMT9 (ENSGFOG00000008836)	ARHGAP10 (ENSGFOG00000008823)	NR3C2 (ENSGFOG00000008808)	DCLK2 (ENSGFOG00000007385)	MAB21L2 (ENSGFOG00000007357)	LRBA (ENSGFOG00000007183)	PPM1K (ENSGFOG00000007117)	WDFY3 (ENSGFOG00000006891)	CDS1 (ENSGFOG00000006846)	ENSGFOG00000006833	ENSGFOG00000006825	ABRAXAS1 (ENSGFOG00000006816)	ENSGFOG00000006813	HELQ (ENSGFOG00000006634)	HPSE (ENSGFOG00000006616) ##22	COQ2 (ENSGFOG00000006608)	PLAC8 (ENSGFOG00000006599)	ENSGFOG00000006591	ABCG2 (ENSGFOG00000006578)	PKD2 (ENSGFOG00000005660)	SPP1 (ENSGFOG00000005629)	IBSP (ENSGFOG00000005618)	ENSGFOG00000005607	SPARCL1 (ENSGFOG00000005588)	NUDT9 (ENSGFOG00000005581)	ENSGFOG00000005576	HSD17B11 (ENSGFOG00000005567)	KLHL8 (ENSGFOG00000005557)	BMP3 (ENSGFOG00000005554)	FGF5 (ENSGFOG00000005491)
Flycatcher	MODERN SPECIES	22	PRMT9 (ENSFALG00000005438)	ARHGAP10 (ENSFALG00000005429)	NR3C2 (ENSFALG00000005415)	DCLK2 (ENSFALG00000005403)	LRBA (ENSFALG00000005390)	ENSFALG00000005379	ENSFALG00000005363	ENSFALG00000005328	CDS1 (ENSFALG00000005338)	ENSFALG00000005304	ENSFALG00000005285	ENSFALG00000028272	ENSFALG00000005274	ENSFALG00000005265	HELQ (ENSFALG00000005255)	HPSE (ENSFALG00000005222) ##22	COQ2 (ENSFALG00000028054)	PLAC8 (ENSFALG00000005191)	ENSFALG00000023494	ENSFALG00000026639	ABCG2 (ENSFALG00000005172)	ENSFALG00000023090	ENSFALG00000025706	PKD2 (ENSFALG00000005139)	SPP1 (ENSFALG00000005111)	ENSFALG00000027951	ENSFALG00000026766	ENSFALG00000025272	IBSP (ENSFALG00000005087)	ENSFALG00000027885	SPARCL1 (ENSFALG00000005055)
Galloanserae	ANCESTRAL SPECIES	34						ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000158010	ENSGT00940000154426	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090	ENSGT00390000003175.a.b	ENSGT00940000161474.b.a	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b
Anatidae	ANCESTRAL SPECIES	2	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00950000182878.b.b	ENSGT00940000155475	ENSGT00800000124172	ENSGT01030000235417	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00960000191080	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000158010	ENSGT00440000039914	ENSGT00940000154426	ENSGT01030000234578.A.a	ENSGT00940000162090.a	ENSGT00390000003175.a.b	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b	ENSGT00960000189615
Duck	MODERN SPECIES	22	QRFPR (ENSAPLG00000014381)	TNIP3 (ENSAPLG00000014144)	NDNF (ENSAPLG00000018459)	PRDM5 (ENSAPLG00000013828)	MAD2L1 (ENSAPLG00000013807)	RPL7L1 (ENSAPLG00000013503)	PDE5A (ENSAPLG00000013130)	ENSAPLG00000029776	USP53 (ENSAPLG00000027499)	MYOZ2 (ENSAPLG00000012707)	SYNPO2 (ENSAPLG00000012703)	ENSAPLG00000022788	ABRAXAS1 (ENSAPLG00000012556)	ENSAPLG00000012544	HELQ (ENSAPLG00000012292)	HPSE (ENSAPLG00000012084) ##22	COQ2 (ENSAPLG00000012017)	PLAC8 (ENSAPLG00000020439)	ENSAPLG00000011950	HNRNPD (ENSAPLG00000031205)	HNRNPDL (ENSAPLG00000011774)	SEC31A (ENSAPLG00000010192)	ENSAPLG00000027320	LIN54 (ENSAPLG00000009904)	ENSAPLG00000029432	COPS4 (ENSAPLG00000009737)	ARHGAP24 (ENSAPLG00000006223)	MAPK10 (ENSAPLG00000005856)	ENSAPLG00000028936	ENSAPLG00000020567	AFF1 (ENSAPLG00000004059)
Pink-footed goose	MODERN SPECIES	163		TNIP3 (ENSABRG00000015918)	NDNF (ENSABRG00000015905)	PRDM5 (ENSABRG00000015877)	MAD2L1 (ENSABRG00000015853)	RPL7L1 (ENSABRG00000015850)	PDE5A (ENSABRG00000015697)	FABP2 (ENSABRG00000015668)	ENSABRG00000015667	USP53 (ENSABRG00000015590)	MYOZ2 (ENSABRG00000015553)	SYNPO2 (ENSABRG00000015534)	ABRAXAS1 (ENSABRG00000015502)	ENSABRG00000015499	HELQ (ENSABRG00000015348)	HPSE (ENSABRG00000015309) ##22	COQ2 (ENSABRG00000015300)	PLAC8 (ENSABRG00000015295)	ENSABRG00000015290	HNRNPD (ENSABRG00000015285)	ENSABRG00000015284	ENOPH1 (ENSABRG00000015281)	HNRNPDL (ENSABRG00000015277)	TMEM150C (ENSABRG00000015267)	SCD5 (ENSABRG00000015261)	SEC31A (ENSABRG00000008982)	LIN54 (ENSABRG00000007914)	COPS4 (ENSABRG00000007715)	ARHGAP24 (ENSABRG00000007687)	MAPK10 (ENSABRG00000007217)	PTPN13 (ENSABRG00000004250)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00950000182886.a.b	ENSGT00960000190971	ENSGT00940000155527	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000158010	ENSGT00940000154426	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090	ENSGT00390000003175.a.b	ENSGT00940000161474.b.a	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b
Japanese quail	MODERN SPECIES	22	POLR2B (ENSCJPG00005010621)	IGFBP7 (ENSCJPG00005010620)	TECRL (ENSCJPG00005010619)	ENSCJPG00005010612	ADGRL3 (ENSCJPG00005010611)	ENSCJPG00005010602	PPM1K (ENSCJPG00005010601)	WDFY3 (ENSCJPG00005010349)	CDS1 (ENSCJPG00005010179)	NKX6-1 (ENSCJPG00005010178)	ENSCJPG00005010177	ENSCJPG00005010176	ABRAXAS1 (ENSCJPG00005010175)	ENSCJPG00005010174	HELQ (ENSCJPG00005010173)	HPSE (ENSCJPG00005010053) ##22	COQ2 (ENSCJPG00005010052)	PLAC8 (ENSCJPG00005010051)	HNRNPD (ENSCJPG00005010050)	HNRNPDL (ENSCJPG00005010049)	ENOPH1 (ENSCJPG00005010048)	TMEM150C (ENSCJPG00005010047)	SCD5 (ENSCJPG00005010044)	SEC31A (ENSCJPG00005010043)	THAP9 (ENSCJPG00005010042)	LIN54 (ENSCJPG00005010041)	COPS4 (ENSCJPG00005010040)	ARHGAP24 (ENSCJPG00005010039)	MAPK10 (ENSCJPG00005010037)	PTPN13 (ENSCJPG00005010036)	AFF1 (ENSCJPG00005010035)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000155341.h	ENSGT00390000001695	ENSGT00950000183132.C	ENSGT00530000063555.A.a.a	ENSGT00950000182886.a.b	ENSGT00940000155527	ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000158010	ENSGT00940000154426	ENSGT00440000039914	ENSGT01030000234578.A.a	ENSGT00940000162090	ENSGT00390000003175.a.b	ENSGT00940000161474.b.a	ENSGT00940000155881	ENSGT00940000153510.b	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b
Turkey	MODERN SPECIES	24	ENSMGAG00000016550	ENSMGAG00000007913	ENSMGAG00000007943	ENSMGAG00000022538	SCD5 (ENSMGAG00000008016)	ENSMGAG00000008026	ENSMGAG00000008019	ENSMGAG00000008033	ENSMGAG00000008051	ENSMGAG00000008069	ENSMGAG00000008068	ENSMGAG00000019128	ABRAXAS1 (ENSMGAG00000008138)	ENSMGAG00000008136	ENSMGAG00000008112	ENSMGAG00000008078 ##22	ENSMGAG00000018661	ENSMGAG00000008154	ENSMGAG00000018801	ENSMGAG00000020569	ENSMGAG00000008230	ENSMGAG00000020442	ENSMGAG00000021084	ENSMGAG00000019638	ENSMGAG00000008373	ENSMGAG00000020831	ENSMGAG00000018258	ENSMGAG00000008384	ENSMGAG00000022122	ENSMGAG00000008465	ENSMGAG00000008468
Chicken	MODERN SPECIES	33	POLR2B (ENSGALG00010003676)	IGFBP7 (ENSGALG00010003660)	ENSGALG00010004496	TECRL (ENSGALG00010003632)	ADGRL3 (ENSGALG00010003560)	PPM1K (ENSGALG00010003531)	WDFY3 (ENSGALG00010003507)	CDS1 (ENSGALG00010003456)	ENSGALG00010003453	GPAT3 (ENSGALG00010002614)	ENSGALG00010004963	FAM175A (ENSGALG00010002588)	ENSGALG00010002553	HELQ (ENSGALG00010002576)	MRPS18C (ENSGALG00010002565)	HPSE (ENSGALG00010002522) ##22	COQ2 (ENSGALG00010002483)	PLACL2 (ENSGALG00010003240)	PLAC8L1 (ENSGALG00010003227)	HNRNPD (ENSGALG00010004018)	HNRNPDL (ENSGALG00010004003)	ENOPH1 (ENSGALG00010003988)	TMEM150C (ENSGALG00010003981)	SCD5 (ENSGALG00010003948)	SEC31A (ENSGALG00010003925)	THAP9 (ENSGALG00010003910)	LIN54 (ENSGALG00010003899)	COPS4 (ENSGALG00010003894)	ARHGAP24 (ENSGALG00010003878)	MAPK10 (ENSGALG00010003834)	PTPN13 (ENSGALG00010003823)
African ostrich	MODERN SPECIES	662	THAP9 (ENSSCUG00000007127)	SEC31A (ENSSCUG00000007129)	SCD5 (ENSSCUG00000007138)	TMEM150C (ENSSCUG00000007139)	ENOPH1 (ENSSCUG00000007140)	HNRNPDL (ENSSCUG00000007141)	HNRNPD (ENSSCUG00000007142)	PPM1K (ENSSCUG00000007144)	WDFY3 (ENSSCUG00000007148)	CDS1 (ENSSCUG00000007163)	ENSSCUG00000007187	ENSSCUG00000007192	ABRAXAS1 (ENSSCUG00000007194)	ENSSCUG00000007202	HELQ (ENSSCUG00000007210)	HPSE (ENSSCUG00000007213) ##22	COQ2 (ENSSCUG00000007217)	PLAC8 (ENSSCUG00000007220)	ENSSCUG00000007223
Australian saltwater crocodile	MODERN SPECIES	65						WDFY3 (ENSCPRG00005015252)	CDS1 (ENSCPRG00005015205)	NKX6-1 (ENSCPRG00005015198)	ENSCPRG00005015184	GPAT3 (ENSCPRG00005015172)	ENSCPRG00005015164	ENSCPRG00005015159	ENSCPRG00005015145	HELQ (ENSCPRG00005015037)	ENSCPRG00005015012	HPSE (ENSCPRG00005014984) ##22	ENSCPRG00005014969	ENSCPRG00005014966	HNRNPD (ENSCPRG00005014961)	HNRNPDL (ENSCPRG00005014959)	ENOPH1 (ENSCPRG00005014954)	TMEM150C (ENSCPRG00005014944)	SCD5 (ENSCPRG00005014907)	SEC31A (ENSCPRG00005013624)	THAP9 (ENSCPRG00005013454)	LIN54 (ENSCPRG00005013448)	ENSCPRG00005013441	ENSCPRG00005013439	ENSCPRG00005013431	ARHGAP24 (ENSCPRG00005013430)	MAPK10 (ENSCPRG00005013428)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00390000014810.b	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.u.b.e	ENSGT00940000157329.u.b.f	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b
Testudinoidea	ANCESTRAL SPECIES	34	ENSGT00390000017405	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.u.b.e	ENSGT00940000157329.u.b.f	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b
Testudinidae	ANCESTRAL SPECIES	39	ENSGT00390000017405	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.u.b.f	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b	ENSGT00940000159775
Abingdon island giant tortoise	MODERN SPECIES	2148				ATOSB (ENSCABG00000006751)	STOML2 (ENSCABG00000006788)	PIGO (ENSCABG00000006795)	FANCG (ENSCABG00000006869)	VCP (ENSCABG00000006878)	DNAJB5 (ENSCABG00000006885)	PHF24 (ENSCABG00000006902)	ENSCABG00000007036	GPAT3 (ENSCABG00000007041)	ABRAXAS1 (ENSCABG00000007053)	ENSCABG00000007056	HELQ (ENSCABG00000007074)	HPSE (ENSCABG00000007279) ##22	COQ2 (ENSCABG00000007282)	ENSCABG00000007306
Goode s thornscrub tortoise	MODERN SPECIES	19	KLHL8 (ENSGEVG00005000828)	AFF1 (ENSGEVG00005000895)	ENSGEVG00005000968	ENSGEVG00005000978	PTPN13 (ENSGEVG00005001136)	MAPK10 (ENSGEVG00005001905)	ARHGAP24 (ENSGEVG00005002926)	WDFY3 (ENSGEVG00005003027)	ENSGEVG00005003099	CDS1 (ENSGEVG00005003115)	ENSGEVG00005003134	GPAT3 (ENSGEVG00005003150)	ABRAXAS1 (ENSGEVG00005003177)	ENSGEVG00005003191	HELQ (ENSGEVG00005003205)	HPSE (ENSGEVG00005003228) ##22	COQ2 (ENSGEVG00005003245)	ENSGEVG00005003256	PLAC8 (ENSGEVG00005003279)	COPS4 (ENSGEVG00005003304)	LIN54 (ENSGEVG00005003325)	THAP9 (ENSGEVG00005003346)	SEC31A (ENSGEVG00005003370)	SCD5 (ENSGEVG00005003418)	TMEM150C (ENSGEVG00005003441)	ENOPH1 (ENSGEVG00005003454)	HNRNPDL (ENSGEVG00005003463)	HNRNPD (ENSGEVG00005003478)	ENSGEVG00005003502	RASGEF1B (ENSGEVG00005003532)	BMP3 (ENSGEVG00005003568)
Emydidae	ANCESTRAL SPECIES	27	ENSGT00940000160856	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329.u.a	ENSGT00940000157329.u.b.f	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000160325.a	ENSGT00940000155816.b	ENSGT00940000159775
Three-toed box turtle	MODERN SPECIES	377	NUDT9 (ENSTMTG00000003447)	HSD17B11 (ENSTMTG00000003476)	ENSTMTG00000003528	KLHL8 (ENSTMTG00000003551)	AFF1 (ENSTMTG00000003589)	PTPN13 (ENSTMTG00000004005)	MAPK10 (ENSTMTG00000008092)	ARHGAP24 (ENSTMTG00000011532)	WDFY3 (ENSTMTG00000011583)	CDS1 (ENSTMTG00000011826)	ENSTMTG00000011867	GPAT3 (ENSTMTG00000011880)	ABRAXAS1 (ENSTMTG00000011906)	ENSTMTG00000011934	HELQ (ENSTMTG00000011954)	HPSE (ENSTMTG00000011996) ##22	COQ2 (ENSTMTG00000012017)	ENSTMTG00000012059	ENSTMTG00000012082
painted turtle	MODERN SPECIES	2431	ENSCPBG00000005364	KLHL8 (ENSCPBG00000005370)	AFF1 (ENSCPBG00000005382)	ENSCPBG00000005400	PTPN13 (ENSCPBG00000005412)	MAPK10 (ENSCPBG00000005448)	ARHGAP24 (ENSCPBG00000005490)	ENSCPBG00000005522	WDFY3 (ENSCPBG00000005618)	ENSCPBG00000005949	NKX6-1 (ENSCPBG00000007754)	GPAT3 (ENSCPBG00000007766)	ABRAXAS1 (ENSCPBG00000007774)	ENSCPBG00000007783	HELQ (ENSCPBG00000007787)	HPSE (ENSCPBG00000007796) ##22	COQ2 (ENSCPBG00000007807)	ENSCPBG00000007819	PLAC8 (ENSCPBG00000007824)	COPS4 (ENSCPBG00000007835)	LIN54 (ENSCPBG00000007858)	THAP9 (ENSCPBG00000007889)	SEC31A (ENSCPBG00000007911)	SCD5 (ENSCPBG00000007982)	TMEM150C (ENSCPBG00000007990)	ENOPH1 (ENSCPBG00000008002)	HNRNPDL (ENSCPBG00000008014)	HNRNPD (ENSCPBG00000008025)	ENSCPBG00000008036	RASGEF1B (ENSCPBG00000008051)	BMP3 (ENSCPBG00000008067)
Chinese turtle	MODERN SPECIES	113							ENSPSIG00000001604	WDFY3 (ENSPSIG00000015111)	CDS1 (ENSPSIG00000015258)	NKX6-1 (ENSPSIG00000015332)	ENSPSIG00000015347	GPAT3 (ENSPSIG00000015383)	ABRAXAS1 (ENSPSIG00000015822)	ENSPSIG00000015848	HELQ (ENSPSIG00000015865)	HPSE (ENSPSIG00000015879) ##22	ENSPSIG00000016552	COQ2 (ENSPSIG00000016561)	ENSPSIG00000016565	ENSPSIG00000016570	ENSPSIG00000016575	COPS4 (ENSPSIG00000016589)	LIN54 (ENSPSIG00000016595)	THAP9 (ENSPSIG00000016699)	SEC31A (ENSPSIG00000016702)	SCD5 (ENSPSIG00000016708)	HNRNPDL (ENSPSIG00000016746)	HNRNPD (ENSPSIG00000017029)	ENSPSIG00000017550	RASGEF1B (ENSPSIG00000017554)	BMP3 (ENSPSIG00000017711)
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165877	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Theria	ANCESTRAL SPECIES	6	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Marsupialia	ANCESTRAL SPECIES	21	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A.a	ENSGT00530000063548.A.b	ENSGT00390000012635	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.a.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a
Marsupialia_b	ANCESTRAL SPECIES	22	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A.a	ENSGT00530000063548.A.b	ENSGT00390000010355	ENSGT00390000012635	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.a.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196
Diprotodontia	ANCESTRAL SPECIES	25	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A.a	ENSGT00530000063548.A.b	ENSGT00390000010355	ENSGT00390000012635	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.a.b.a	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196
Diprotodontia_a	ANCESTRAL SPECIES	26	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A.a	ENSGT00530000063548.A.b	ENSGT00390000010355	ENSGT00390000012635	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.a.b.a	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000157778	ENSGT00950000183003.a.a.a.a.a	ENSGT00940000160196
Common wonbat	MODERN SPECIES	666	PPEF2 (ENSVURG00010009823)	ENSVURG00010009843	ENSVURG00010009846	NAAA (ENSVURG00010009860)	SDAD1 (ENSVURG00010009884)	ENSVURG00010009926	ENSVURG00010009931	ENSVURG00010009935	ENSVURG00010009945	NUP54 (ENSVURG00010009966)	SCARB2 (ENSVURG00010009978)	ENSVURG00010009986	ENSVURG00010009991	CCDC158 (ENSVURG00010009996)	ENSVURG00010010027	HPSE (ENSVURG00010010034) ##22	COQ2 (ENSVURG00010010043)	PLAC8 (ENSVURG00010010048)	COPS4 (ENSVURG00010010058)	LIN54 (ENSVURG00010010074)	SEC31A (ENSVURG00010010121)	SCD5 (ENSVURG00010010346)	TMEM150C (ENSVURG00010010457)	ENOPH1 (ENSVURG00010010464)	ENSVURG00010010478	HNRNPD (ENSVURG00010010545)	ENSVURG00010010572	RASGEF1B (ENSVURG00010010605)	ENSVURG00010010660	ENSVURG00010010672	SEPTIN11 (ENSVURG00010010674)
koala	MODERN SPECIES	31	USO1 (ENSPCIG00000007041)	PPEF2 (ENSPCIG00000007036)	NAAA (ENSPCIG00000031197)	ENSPCIG00000014441	ENSPCIG00000014440	SDAD1 (ENSPCIG00000014434)	ENSPCIG00000030826	ENSPCIG00000007034	ENSPCIG00000007033	ENSPCIG00000007032	NUP54 (ENSPCIG00000007031)	SCARB2 (ENSPCIG00000012244)	ENSPCIG00000014902	ENSPCIG00000035311	CCDC158 (ENSPCIG00000014887)	ENSPCIG00000014880 ##22	COQ2 (ENSPCIG00000020800)	PLAC8 (ENSPCIG00000014876)	COPS4 (ENSPCIG00000014871)	LIN54 (ENSPCIG00000014870)	SEC31A (ENSPCIG00000014858)	SCD5 (ENSPCIG00000031650)	TMEM150C (ENSPCIG00000003045)	ENOPH1 (ENSPCIG00000003064)	ENSPCIG00000003089	HNRNPD (ENSPCIG00000003112)	ENSPCIG00000010777	RASGEF1B (ENSPCIG00000016369)	ENSPCIG00000028011	SOWAHB (ENSPCIG00000004099)	SEPTIN11 (ENSPCIG00000028014)
Wallaby	MODERN SPECIES	8179																ENSMEUG00000004809 ##22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000021765	CDKL2 (ENSSHAG00000006280)	G3BP2 (ENSSHAG00000007414)	USO1 (ENSSHAG00000031120)	PPEF2 (ENSSHAG00000000877)	NAAA (ENSSHAG00000030700)	SDAD1 (ENSSHAG00000002745)	ENSSHAG00000003925	ENSSHAG00000029695	ENSSHAG00000004563	SCARB2 (ENSSHAG00000029530)	NUP54 (ENSSHAG00000031110)	ENSSHAG00000001112	ENSSHAG00000001426	ENSSHAG00000002216	ENSSHAG00000005570 ##22	PLAC8 (ENSSHAG00000007753)	COPS4 (ENSSHAG00000007866)	LIN54 (ENSSHAG00000008581)	SEC31A (ENSSHAG00000002474)	SCD5 (ENSSHAG00000021451)	TMEM150C (ENSSHAG00000031137)	ENSSHAG00000013658	ENSSHAG00000013616	ENSSHAG00000013312	ENSSHAG00000012974	ENSSHAG00000012394	ENSSHAG00000008657	ENSSHAG00000032288	SEPTIN11 (ENSSHAG00000024880)	CCNI (ENSSHAG00000005656)
Opossum	MODERN SPECIES	4	HPGDS (ENSMODG00000019265)	SMARCAD1 (ENSMODG00000019268)	ATOH1 (ENSMODG00000019270)	GRID2 (ENSMODG00000019273)	ENSMODG00000040643	ENSMODG00000045914	ENSMODG00000029043	ENSMODG00000019293	ENSMODG00000025268	CXCL11 (ENSMODG00000039309)	NUP54 (ENSMODG00000019296)	SCARB2 (ENSMODG00000019298)	ENSMODG00000019294	STBD1 (ENSMODG00000041735)	CCDC158 (ENSMODG00000019307)	HPSE (ENSMODG00000019304) ##22	ENSMODG00000037972	COQ2 (ENSMODG00000019308)	ENSMODG00000025523	ENSMODG00000019309	COPS4 (ENSMODG00000019311)	LIN54 (ENSMODG00000019314)	MRPL1 (ENSMODG00000011704)	CNOT6L (ENSMODG00000011744)	ENSMODG00000025248	ENSMODG00000047582	ENSMODG00000029642	ENSMODG00000048221	CCNG2 (ENSMODG00000011779)	CCNI (ENSMODG00000011794)	SEPTIN11 (ENSMODG00000011825)
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000004874.a.b ##22
Hedgehog	MODERN SPECIES	6819																HPSE (ENSEEUG00000003520) ##22
Common shrew	MODERN SPECIES	5317																HPSE (ENSSARG00000009045) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161
Suina	ANCESTRAL SPECIES	22	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b
Chacoan peccary	MODERN SPECIES	142	ENSCWAG00000020279	C4orf36 (ENSCWAG00000020284)	ENSCWAG00000020289	SLC10A6 (ENSCWAG00000020294)	PTPN13 (ENSCWAG00000007867)	MAPK10 (ENSCWAG00000008717)	ARHGAP24 (ENSCWAG00000009694)	ENSCWAG00000009954	WDFY3 (ENSCWAG00000010017)	CDS1 (ENSCWAG00000010940)	NKX6-1 (ENSCWAG00000011063)	GPAT3 (ENSCWAG00000011111)	ABRAXAS1 (ENSCWAG00000011227)	MRPS18C (ENSCWAG00000011387)	HELQ (ENSCWAG00000011518)	HPSE (ENSCWAG00000011728) ##22	COQ2 (ENSCWAG00000011816)	ENSCWAG00000011843	ENSCWAG00000011874	COPS4 (ENSCWAG00000011915)	LIN54 (ENSCWAG00000011977)	ENSCWAG00000012230	SEC31A (ENSCWAG00000012320)	SCD5 (ENSCWAG00000013393)	TMEM150C (ENSCWAG00000013440)	ENOPH1 (ENSCWAG00000013561)	HNRNPDL (ENSCWAG00000013621)	HNRNPD (ENSCWAG00000013762)	RASGEF1B (ENSCWAG00000013985)	PRKG2 (ENSCWAG00000014533)	BMP3 (ENSCWAG00000014630)
Pig	MODERN SPECIES	16	ENSSSCG00000043871	C4orf36 (ENSSSCG00000032190)	SLC10A6 (ENSSSCG00000028952)	PTPN13 (ENSSSCG00000026655)	MAPK10 (ENSSSCG00000009228)	ENSSSCG00000058771	ARHGAP24 (ENSSSCG00000009229)	WDFY3 (ENSSSCG00000009230)	CDS1 (ENSSSCG00000009231)	NKX6-1 (ENSSSCG00000009232)	GPAT3 (ENSSSCG00000009233)	ABRAXAS1 (ENSSSCG00000009234)	MRPS18C (ENSSSCG00000038042)	HELQ (ENSSSCG00000009236)	ENSSSCG00000051849	HPSE (ENSSSCG00000009237) ##22	COQ2 (ENSSSCG00000009238)	ENSSSCG00000009239	ENSSSCG00000009240	COPS4 (ENSSSCG00000009241)	LIN54 (ENSSSCG00000009242)	THAP9 (ENSSSCG00000009243)	SEC31A (ENSSSCG00000009244)	SCD5 (ENSSSCG00000009245)	TMEM150C (ENSSSCG00000026729)	ENOPH1 (ENSSSCG00000009246)	HNRNPDL (ENSSSCG00000037245)	ENSSSCG00000040448	HNRNPD (ENSSSCG00000009249)	ENSSSCG00000055411	ENSSSCG00000053473
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.f	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.k.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.f	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00440000039914.k.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288
Odontoceti_a	ANCESTRAL SPECIES	23	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.f.a	ENSGT01050000244986.b.b.b.a	ENSGT00940000153064.b.d.g.a.a.b.b	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.k.a	ENSGT00940000154426.b.b	ENSGT00940000158010
Dolphin	MODERN SPECIES	1964												GPAT3 (ENSTTRG00000004901)	ABRAXAS1 (ENSTTRG00000004898)	MRPS18C (ENSTTRG00000004897)	HELQ (ENSTTRG00000004895)	HPSE (ENSTTRG00000004885) ##22
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b.g	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00730000111184.b	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.c	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.f.a	ENSGT01050000244986.b.b.b.a.c.b.a.a.a.a.b	ENSGT00940000153064.b.d.g.a.a.b.b	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.k.a	ENSGT00940000154426.b.b	ENSGT00940000158010
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b.g	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00730000111184.b	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.c	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.f.a	ENSGT01050000244986.b.b.b.a.c.b.a.a.a.a.b.c	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b
Beluga whale	MODERN SPECIES	53	SFRP2 (ENSDLEG00000014900)	ENSDLEG00000014886	DCHS2 (ENSDLEG00000014851)	PLRG1 (ENSDLEG00000014823)	FGB (ENSDLEG00000014794)	ENSDLEG00000014768	FGG (ENSDLEG00000014746)	LRAT (ENSDLEG00000014737)	RBM46 (ENSDLEG00000014695)	NKX6-1 (ENSDLEG00000014670)	GPAT3 (ENSDLEG00000014638)	ENSDLEG00000014630	ABRAXAS1 (ENSDLEG00000014620)	MRPS18C (ENSDLEG00000014529)	HELQ (ENSDLEG00000014489)	HPSE (ENSDLEG00000014464) ##22	ENSDLEG00000014435	ENSDLEG00000014429	ENSDLEG00000014422	ENSDLEG00000014406	PLAC8 (ENSDLEG00000014395)	COPS4 (ENSDLEG00000014368)	LIN54 (ENSDLEG00000014184)	THAP9 (ENSDLEG00000014162)	ENSDLEG00000014152	SEC31A (ENSDLEG00000013553)	SCD5 (ENSDLEG00000013476)	TMEM150C (ENSDLEG00000013460)	ENOPH1 (ENSDLEG00000013449)	HNRNPDL (ENSDLEG00000013418)	HNRNPD (ENSDLEG00000013324)
Narwhal	MODERN SPECIES	307	C4orf36 (ENSMMNG00015020430)	ENSMMNG00015020444	PTPN13 (ENSMMNG00015020602)	ENSMMNG00015020980	MAPK10 (ENSMMNG00015021086)	ENSMMNG00015021212	ARHGAP24 (ENSMMNG00015021223)	WDFY3 (ENSMMNG00015021267)	CDS1 (ENSMMNG00015021330)	MAP9 (ENSMMNG00015021363)	NKX6-1 (ENSMMNG00015021370)	GPAT3 (ENSMMNG00015021395)	ABRAXAS1 (ENSMMNG00015021418)	ENSMMNG00015021433	HELQ (ENSMMNG00015021461)	HPSE (ENSMMNG00015015014) ##22	ENSMMNG00015015039	ENSMMNG00015015052	PLAC8 (ENSMMNG00015015064)	COPS4 (ENSMMNG00015015091)	LIN54 (ENSMMNG00015015144)	THAP9 (ENSMMNG00015015189)	SEC31A (ENSMMNG00015015379)	SCD5 (ENSMMNG00015015566)	TMEM150C (ENSMMNG00015015593)	ENSMMNG00015015615	HNRNPDL (ENSMMNG00015015647)	HNRNPD (ENSMMNG00015015699)	RASGEF1B (ENSMMNG00015015856)	ENSMMNG00015016036	PRKG2 (ENSMMNG00015016089)
Vaquita	MODERN SPECIES	16	ENSPSNG00000005321	AFF1 (ENSPSNG00000005255)	C4orf36 (ENSPSNG00000005211)	SLC10A6 (ENSPSNG00000005183)	PTPN13 (ENSPSNG00000004803)	MAPK10 (ENSPSNG00000003815)	ARHGAP24 (ENSPSNG00000003397)	WDFY3 (ENSPSNG00000003315)	CDS1 (ENSPSNG00000003244)	ENSPSNG00000003212	NKX6-1 (ENSPSNG00000003189)	GPAT3 (ENSPSNG00000003169)	ABRAXAS1 (ENSPSNG00000003150)	ENSPSNG00000003127	HELQ (ENSPSNG00000003097)	HPSE (ENSPSNG00000003060) ##22	ENSPSNG00000003043	PLAC8 (ENSPSNG00000003027)	COPS4 (ENSPSNG00000002984)	LIN54 (ENSPSNG00000002941)	THAP9 (ENSPSNG00000002893)	SEC31A (ENSPSNG00000002644)	SCD5 (ENSPSNG00000002435)	TMEM150C (ENSPSNG00000002402)	ENSPSNG00000002379	HNRNPDL (ENSPSNG00000002324)	HNRNPD (ENSPSNG00000002253)	ENSPSNG00000002219	RASGEF1B (ENSPSNG00000002075)	PRKG2 (ENSPSNG00000001904)	BMP3 (ENSPSNG00000001867)
Sperm whale	MODERN SPECIES	18	SLC30A9 (ENSPCTG00005012190)	BEND4 (ENSPCTG00005012093)	SHISA3 (ENSPCTG00005012062)	ENSPCTG00005012026	ATP8A1 (ENSPCTG00005011864)	GRXCR1 (ENSPCTG00005011794)	ENSPCTG00005011773	KCTD8 (ENSPCTG00005011734)	WDFY3 (ENSPCTG00005011133)	CDS1 (ENSPCTG00005010950)	NKX6-1 (ENSPCTG00005010886)	GPAT3 (ENSPCTG00005010823)	ABRAXAS1 (ENSPCTG00005010778)	MRPS18C (ENSPCTG00005010717)	HELQ (ENSPCTG00005010649)	HPSE (ENSPCTG00005010579) ##22	ENSPCTG00005010345	ENSPCTG00005010266	PLAC8 (ENSPCTG00005010194)	COPS4 (ENSPCTG00005010125)	LIN54 (ENSPCTG00005009788)	THAP9 (ENSPCTG00005009705)	SEC31A (ENSPCTG00005007490)	SCD5 (ENSPCTG00005007290)	TMEM150C (ENSPCTG00005007251)	ENOPH1 (ENSPCTG00005007192)	HNRNPDL (ENSPCTG00005007083)	HNRNPD (ENSPCTG00005006976)	ENSPCTG00005006934	RASGEF1B (ENSPCTG00005006551)	PRKG2 (ENSPCTG00005006399)
Blue whale	MODERN SPECIES	16	AFF1 (ENSBMSG00010001892)	C4orf36 (ENSBMSG00010001908)	SLC10A6 (ENSBMSG00010001920)	PTPN13 (ENSBMSG00010001970)	MAPK10 (ENSBMSG00010002157)	ARHGAP24 (ENSBMSG00010002391)	ENSBMSG00010002445	ENSBMSG00010002461	ENSBMSG00010002473	CDS1 (ENSBMSG00010002491)	NKX6-1 (ENSBMSG00010002515)	GPAT3 (ENSBMSG00010002532)	ABRAXAS1 (ENSBMSG00010002554)	MRPS18C (ENSBMSG00010002580)	HELQ (ENSBMSG00010002636)	HPSE (ENSBMSG00010002695) ##22	COQ2 (ENSBMSG00010002720)	ENSBMSG00010002728	PLAC8 (ENSBMSG00010002739)	COPS4 (ENSBMSG00010002752)	LIN54 (ENSBMSG00010002779)	THAP9 (ENSBMSG00010002849)	ENSBMSG00010002855	SCD5 (ENSBMSG00010002867)	TMEM150C (ENSBMSG00010002881)	ENOPH1 (ENSBMSG00010002894)	ENSBMSG00010002914	ENSBMSG00010002940	HNRNPD (ENSBMSG00010002956)	RASGEF1B (ENSBMSG00010003013)	ENSBMSG00010003184
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393
Bos	ANCESTRAL SPECIES	15	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.n	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b.g.a	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393
Bos_b	ANCESTRAL SPECIES	14	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.n.a	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b.g.a	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b	ENSGT00940000159393
Hybrid Bos Indicus	MODERN SPECIES	25	SLC10A6 (ENSBIXG00005017247)	ENSBIXG00005017276	ENSBIXG00005017372	ENSBIXG00005002829	ENSBIXG00005005513	MAPK10 (ENSBIXG00005018360)	ARHGAP24 (ENSBIXG00005018506)	WDFY3 (ENSBIXG00005018815)	CDS1 (ENSBIXG00005000063)	NKX6-1 (ENSBIXG00005003082)	ENSBIXG00005018974	ABRAXAS1 (ENSBIXG00005019067)	ENSBIXG00005019139	HELQ (ENSBIXG00005019158)	ENSBIXG00005019178	HPSE (ENSBIXG00005019430) ##22	ENSBIXG00005003170	COQ2 (ENSBIXG00005019522)	ENSBIXG00005019535	ENSBIXG00005019584	COPS4 (ENSBIXG00005019645)	LIN54 (ENSBIXG00005003283)	THAP9 (ENSBIXG00005006456)	SEC31A (ENSBIXG00005020914)	ENSBIXG00005021130	ENSBIXG00005003572	SCD5 (ENSBIXG00005003574)	ENSBIXG00005021178	TMEM150C (ENSBIXG00005003590)	ENOPH1 (ENSBIXG00005021273)	HNRNPDL (ENSBIXG00005021441)
Cow	MODERN SPECIES	25	C4orf36 (ENSBTAG00000051915)	ENSBTAG00000050963	ENSBTAG00000047514	PTPN13 (ENSBTAG00000014947)	ENSBTAG00000050276	ENSBTAG00000045839	MAPK10 (ENSBTAG00000020048)	ARHGAP24 (ENSBTAG00000003959)	WDFY3 (ENSBTAG00000013495)	CDS1 (ENSBTAG00000045787)	NKX6-1 (ENSBTAG00000002518)	GPAT3 (ENSBTAG00000017592)	ABRAXAS1 (ENSBTAG00000014076)	MRPS18C (ENSBTAG00000018155)	HELQ (ENSBTAG00000018151)	HPSE (ENSBTAG00000005745) ##22	ENSBTAG00000046700	COQ2 (ENSBTAG00000005744)	PLAC8A (ENSBTAG00000009849)	PLAC8B (ENSBTAG00000031750)	COPS4 (ENSBTAG00000006950)	LIN54 (ENSBTAG00000010546)	THAP9 (ENSBTAG00000022450)	SEC31A (ENSBTAG00000020525)	SCD5 (ENSBTAG00000022449)	TMEM150C (ENSBTAG00000032588)	ENOPH1 (ENSBTAG00000014805)	HNRNPDL (ENSBTAG00000014804)	HNRNPD (ENSBTAG00000013952)	ENSBTAG00000052070	RASGEF1B (ENSBTAG00000006561)
Bos_a	ANCESTRAL SPECIES	21	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.n	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000154222.d.b.d.g.a.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00390000002398.f.b.b	ENSGT00390000005197.a	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b.g.a	ENSGT00940000158010	ENSGT00950000185288
Domestic yak	MODERN SPECIES	25	PTPN13 (ENSBGRG00000016575)	ENSBGRG00000016870	ENSBGRG00000016888	MAPK10 (ENSBGRG00000017007)	ARHGAP24 (ENSBGRG00000018148)	ENSBGRG00000018396	WDFY3 (ENSBGRG00000018444)	ENSBGRG00000020638	CDS1 (ENSBGRG00000020658)	NKX6-1 (ENSBGRG00000020754)	ENSBGRG00000020797	ABRAXAS1 (ENSBGRG00000020830)	MRPS18C (ENSBGRG00000020952)	ENSBGRG00000021080	ENSBGRG00000021100	HPSE (ENSBGRG00000021245) ##22	COQ2 (ENSBGRG00000021631)	ENSBGRG00000021702	ENSBGRG00000021746	PLAC8 (ENSBGRG00000021788)	COPS4 (ENSBGRG00000021845)	LIN54 (ENSBGRG00000021975)	THAP9 (ENSBGRG00000022302)	SEC31A (ENSBGRG00000022409)	SCD5 (ENSBGRG00000023293)	TMEM150C (ENSBGRG00000023370)	ENOPH1 (ENSBGRG00000023470)	ENSBGRG00000023638	RASGEF1B (ENSBGRG00000023927)	PRKG2 (ENSBGRG00000024304)	BMP3 (ENSBGRG00000024470)
Wild yak	MODERN SPECIES	1808																HPSE (ENSBMUG00000009695) ##22	ENSBMUG00000009646	COQ2 (ENSBMUG00000009639)
American bison	MODERN SPECIES	3145					ENSBBBG00000019073	MAPK10 (ENSBBBG00000021242)	ENSBBBG00000021405	ARHGAP24 (ENSBBBG00000021449)	WDFY3 (ENSBBBG00000021530)	CDS1 (ENSBBBG00000021561)	NKX6-1 (ENSBBBG00000021568)	GPAT3 (ENSBBBG00000021607)	ABRAXAS1 (ENSBBBG00000021618)	ENSBBBG00000007196	HELQ (ENSBBBG00000005762)	HPSE (ENSBBBG00000021800) ##22	ENSBBBG00000021819	COQ2 (ENSBBBG00000021841)	ENSBBBG00000005784	PLAC8 (ENSBBBG00000021864)	COPS4 (ENSBBBG00000021925)	LIN54 (ENSBBBG00000022049)	THAP9 (ENSBBBG00000005822)	SEC31A (ENSBBBG00000022615)	SCD5 (ENSBBBG00000008790)	TMEM150C (ENSBBBG00000022705)	ENSBBBG00000022729	HNRNPDL (ENSBBBG00000005995)	HNRNPD (ENSBBBG00000022878)	ENSBBBG00000022894	RASGEF1B (ENSBBBG00000023005)
Caprinae	ANCESTRAL SPECIES	13	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153112.D.c.a	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.a.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.g	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.l	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Goat	MODERN SPECIES	25	PTPN13 (ENSCHIG00000021006)	ENSCHIG00000013818	ENSCHIG00000003527	ENSCHIG00000018060	MAPK10 (ENSCHIG00000012374)	ARHGAP24 (ENSCHIG00000022792)	ENSCHIG00000024192	ENSCHIG00000012928	WDFY3 (ENSCHIG00000023077)	CDS1 (ENSCHIG00000012002)	NKX6-1 (ENSCHIG00000023774)	GPAT3 (ENSCHIG00000025469)	ABRAXAS1 (ENSCHIG00000016630)	ENSCHIG00000004461	HELQ (ENSCHIG00000020128)	HPSE (ENSCHIG00000009216) ##22	ENSCHIG00000021767	ENSCHIG00000012923	PLAC8 (ENSCHIG00000022219)	COPS4 (ENSCHIG00000014728)	LIN54 (ENSCHIG00000024928)	THAP9 (ENSCHIG00000016593)	SEC31A (ENSCHIG00000004790)	SCD5 (ENSCHIG00000018012)	TMEM150C (ENSCHIG00000012607)	ENOPH1 (ENSCHIG00000023652)	ENSCHIG00000010260	HNRNPD (ENSCHIG00000022317)	RASGEF1B (ENSCHIG00000022490)	PRKG2 (ENSCHIG00000014973)	BMP3 (ENSCHIG00000024999)
Rambouillet Sheep	MODERN SPECIES	22	AFF1 (ENSOARG00020021386)	C4orf36 (ENSOARG00020021226)	SLC10A6 (ENSOARG00020021292)	PTPN13 (ENSOARG00020019325)	ENSOARG00020019244	MAPK10 (ENSOARG00020018223)	ARHGAP24 (ENSOARG00020017927)	ENSOARG00020017855	WDFY3 (ENSOARG00020015498)	CDS1 (ENSOARG00020015132)	NKX6-1 (ENSOARG00020015056)	GPAT3 (ENSOARG00020014882)	ABRAXAS1 (ENSOARG00020014754)	MRPS18C (ENSOARG00020014621)	HELQ (ENSOARG00020014284)	HPSE (ENSOARG00020013610) ##22	COQ2 (ENSOARG00020013352)	ENSOARG00020013289	PLAC8 (ENSOARG00020013230)	COPS4 (ENSOARG00020013112)	LIN54 (ENSOARG00020012720)	THAP9 (ENSOARG00020012606)	SEC31A (ENSOARG00020010858)	SCD5 (ENSOARG00020010678)	TMEM150C (ENSOARG00020010556)	ENOPH1 (ENSOARG00020010424)	HNRNPDL (ENSOARG00020010186)	ENSOARG00020010101	HNRNPD (ENSOARG00020009917)	RASGEF1B (ENSOARG00020009096)	PRKG2 (ENSOARG00020008731)
Siberian musk deer	MODERN SPECIES	1274												GPAT3 (ENSMMSG00000018167)	ABRAXAS1 (ENSMMSG00000018232)	ENSMMSG00000018290	HELQ (ENSMMSG00000018355)	HPSE (ENSMMSG00000018606) ##22	COQ2 (ENSMMSG00000018901)	ENSMMSG00000018969	PLAC8 (ENSMMSG00000018998)	COPS4 (ENSMMSG00000019039)	LIN54 (ENSMMSG00000019121)	THAP9 (ENSMMSG00000019268)	SEC31A (ENSMMSG00000019376)	SCD5 (ENSMMSG00000020170)	TMEM150C (ENSMMSG00000020193)	ENSMMSG00000020277	HNRNPDL (ENSMMSG00000020337)	HNRNPD (ENSMMSG00000020376)	ENSMMSG00000020463	RASGEF1B (ENSMMSG00000020501)	PRKG2 (ENSMMSG00000020832)
Yarkand deer	MODERN SPECIES	29	PTPN13 (ENSCHYG00000011843)	ENSCHYG00000011708	ENSCHYG00000011686	ENSCHYG00000011591	ENSCHYG00000011569	MAPK10 (ENSCHYG00000010214)	ARHGAP24 (ENSCHYG00000009997)	WDFY3 (ENSCHYG00000009657)	CDS1 (ENSCHYG00000009516)	NKX6-1 (ENSCHYG00000009447)	ENSCHYG00000009381	GPAT3 (ENSCHYG00000009277)	ABRAXAS1 (ENSCHYG00000009158)	ENSCHYG00000009068	HELQ (ENSCHYG00000008723)	HPSE (ENSCHYG00000008412) ##22	COQ2 (ENSCHYG00000008350)	ENSCHYG00000008321	ENSCHYG00000008307	PLAC8 (ENSCHYG00000008274)	COPS4 (ENSCHYG00000008113)	LIN54 (ENSCHYG00000007987)	THAP9 (ENSCHYG00000007939)	SEC31A (ENSCHYG00000006863)	SCD5 (ENSCHYG00000006645)	ENSCHYG00000006619	TMEM150C (ENSCHYG00000006495)	ENSCHYG00000006449	HNRNPDL (ENSCHYG00000006411)	HNRNPD (ENSCHYG00000006262)	ENSCHYG00000006163
Camelidae	ANCESTRAL SPECIES	44	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Arabian camel	MODERN SPECIES	11	C4orf36 (ENSCDRG00005006366)	SLC10A6 (ENSCDRG00005006339)	ENSCDRG00005006322	PTPN13 (ENSCDRG00005005955)	MAPK10 (ENSCDRG00005005394)	ARHGAP24 (ENSCDRG00005005261)	ENSCDRG00005005241	WDFY3 (ENSCDRG00005004624)	CDS1 (ENSCDRG00005004562)	ENSCDRG00005004541	ENSCDRG00005004525	GPAT3 (ENSCDRG00005004508)	ABRAXAS1 (ENSCDRG00005004488)	MRPS18C (ENSCDRG00005004460)	HELQ (ENSCDRG00005004047)	HPSE (ENSCDRG00005003833) ##22	COQ2 (ENSCDRG00005003800)	ENSCDRG00005003781	ENSCDRG00005003768	PLAC8 (ENSCDRG00005003743)	COPS4 (ENSCDRG00005003685)	LIN54 (ENSCDRG00005003557)	THAP9 (ENSCDRG00005003500)	SEC31A (ENSCDRG00005003191)	SCD5 (ENSCDRG00005003107)	TMEM150C (ENSCDRG00005003088)	ENOPH1 (ENSCDRG00005003055)	HNRNPDL (ENSCDRG00005002963)	HNRNPD (ENSCDRG00005002738)	RASGEF1B (ENSCDRG00005002503)	PRKG2 (ENSCDRG00005002430)
Alpaca	MODERN SPECIES	709										WDFY3 (ENSVPAG00000011362)	CDS1 (ENSVPAG00000011361)	GPAT3 (ENSVPAG00000011360)	ABRAXAS1 (ENSVPAG00000011359)	MRPS18C (ENSVPAG00000011358)	HELQ (ENSVPAG00000011357)	HPSE (ENSVPAG00000011356) ##22	COQ2 (ENSVPAG00000011355)	PLAC8 (ENSVPAG00000011354)	COPS4 (ENSVPAG00000011353)	LIN54 (ENSVPAG00000011352)	THAP9 (ENSVPAG00000011351)	SEC31A (ENSVPAG00000011349)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.x.a	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.x.a	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.x.a	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b
Ursus	ANCESTRAL SPECIES	146	ENSGT00680000101436	ENSGT00940000157357	ENSGT01050000244968.c	ENSGT00390000010950	ENSGT00390000001491.a	ENSGT00390000004945	ENSGT00550000074935	ENSGT00940000158075	ENSGT00390000017123.b	ENSGT00940000159383	ENSGT00940000162741.j.i.b	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.x.a	ENSGT00940000158010	ENSGT00950000185288	ENSGT00940000155816.b
American black bear	MODERN SPECIES	550													ABRAXAS1 (ENSUAMG00000012885)	MRPS18C (ENSUAMG00000012878)	HELQ (ENSUAMG00000012816)	HPSE (ENSUAMG00000012802) ##22	COQ2 (ENSUAMG00000012796)	ENSUAMG00000012789	PLAC8 (ENSUAMG00000012786)	COPS4 (ENSUAMG00000012783)	LIN54 (ENSUAMG00000012771)	THAP9 (ENSUAMG00000012761)	ENSUAMG00000012753	SEC31A (ENSUAMG00000012733)	ENSUAMG00000012730
Polar bear	MODERN SPECIES	183								WDFY3 (ENSUMAG00000008995)	ENSUMAG00000008877	CDS1 (ENSUMAG00000008872)	ENSUMAG00000008852	GPAT3 (ENSUMAG00000008842)	ABRAXAS1 (ENSUMAG00000008837)	MRPS18C (ENSUMAG00000008829)	HELQ (ENSUMAG00000008823)	HPSE (ENSUMAG00000008772) ##22	COQ2 (ENSUMAG00000008767)	ENSUMAG00000008764	PLAC8 (ENSUMAG00000008762)	COPS4 (ENSUMAG00000008755)	LIN54 (ENSUMAG00000008750)	THAP9 (ENSUMAG00000008748)	SEC31A (ENSUMAG00000008704)	SCD5 (ENSUMAG00000008694)	TMEM150C (ENSUMAG00000008691)	ENOPH1 (ENSUMAG00000008688)	HNRNPD (ENSUMAG00000008685)	ENSUMAG00000008681	ENSUMAG00000008674	RASGEF1B (ENSUMAG00000008667)	PRKG2 (ENSUMAG00000008585)
Giant Panda	MODERN SPECIES	2	C4orf36 (ENSAMEG00000029259)	SLC10A6 (ENSAMEG00000003408)	PTPN13 (ENSAMEG00000003426)	ENSAMEG00000020112	ENSAMEG00000024509	MAPK10 (ENSAMEG00000003514)	ARHGAP24 (ENSAMEG00000003558)	ENSAMEG00000029199	WDFY3 (ENSAMEG00000003579)	CDS1 (ENSAMEG00000003633)	NKX6-1 (ENSAMEG00000028116)	GPAT3 (ENSAMEG00000004856)	ABRAXAS1 (ENSAMEG00000023567)	MRPS18C (ENSAMEG00000026135)	HELQ (ENSAMEG00000004921)	HPSE (ENSAMEG00000004938) ##22	COQ2 (ENSAMEG00000005006)	ENSAMEG00000005018	PLAC8 (ENSAMEG00000005020)	COPS4 (ENSAMEG00000005021)	LIN54 (ENSAMEG00000005042)	THAP9 (ENSAMEG00000005064)	SEC31A (ENSAMEG00000005066)	SCD5 (ENSAMEG00000005113)	TMEM150C (ENSAMEG00000005124)	ENOPH1 (ENSAMEG00000005140)	ENSAMEG00000024825	ENSAMEG00000005145	HNRNPD (ENSAMEG00000005158)	ENSAMEG00000031158	RASGEF1B (ENSAMEG00000005176)
Mustelinae	ANCESTRAL SPECIES	133												ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.y.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000159393
Ferret	MODERN SPECIES	405												GPAT3 (ENSMPUG00000014675)	ABRAXAS1 (ENSMPUG00000014677)	ENSMPUG00000014681	HELQ (ENSMPUG00000014683)	HPSE (ENSMPUG00000014686) ##22	COQ2 (ENSMPUG00000014689)	ENSMPUG00000014697	ENSMPUG00000014698	PLAC8 (ENSMPUG00000014701)	COPS4 (ENSMPUG00000014708)	ENSMPUG00000014710	LIN54 (ENSMPUG00000014712)	THAP9 (ENSMPUG00000014717)	SEC31A (ENSMPUG00000014721)	ENSMPUG00000014729	TMEM150C (ENSMPUG00000014731)	ENOPH1 (ENSMPUG00000014734)	ENSMPUG00000014753	HNRNPD (ENSMPUG00000014782)	ENSMPUG00000014817
American mink	MODERN SPECIES	133												GPAT3 (ENSNVIG00000004017)	ABRAXAS1 (ENSNVIG00000004035)	MRPS18C (ENSNVIG00000004056)	HELQ (ENSNVIG00000004072)	HPSE (ENSNVIG00000004142) ##22	ENSNVIG00000004169	ENSNVIG00000004178	ENSNVIG00000004190	PLAC8 (ENSNVIG00000004230)	COPS4 (ENSNVIG00000004246)	LIN54 (ENSNVIG00000004292)	THAP9 (ENSNVIG00000004414)	SEC31A (ENSNVIG00000004445)	SCD5 (ENSNVIG00000004692)	T150C (ENSNVIG00000004713)	ENOPH1 (ENSNVIG00000004745)	ENSNVIG00000004759	HNRNPD (ENSNVIG00000004778)	ENSNVIG00000004837	RASGEF1B (ENSNVIG00000004857)
Canidae	ANCESTRAL SPECIES	40	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.x.a	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT00940000155440.d.j	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000156240.f	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000160325.b.d	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b.x.a	ENSGT00940000158010	ENSGT00390000016988.a.a.a.a.a.a.b.b
Dingo	MODERN SPECIES	342	KLHL8 (ENSCAFG00020008159)	AFF1 (ENSCAFG00020008224)	SLC10A6 (ENSCAFG00020008242)	PTPN13 (ENSCAFG00020008350)	ENSCAFG00020009916	MAPK10 (ENSCAFG00020009946)	ARHGAP24 (ENSCAFG00020010087)	WDFY3 (ENSCAFG00020010121)	CDS1 (ENSCAFG00020010454)	NKX6-1 (ENSCAFG00020010474)	ENSCAFG00020010476	GPAT3 (ENSCAFG00020010481)	ABRAXAS1 (ENSCAFG00020010484)	MRPS18C (ENSCAFG00020010491)	HELQ (ENSCAFG00020010495)	HPSE (ENSCAFG00020010498) ##22	COQ2 (ENSCAFG00020010543)	ENSCAFG00020010561	ENSCAFG00020010564	PLAC8 (ENSCAFG00020010575)	ENSCAFG00020010578	COPS4 (ENSCAFG00020010592)	LIN54 (ENSCAFG00020010600)	ENSCAFG00020010647	SEC31A (ENSCAFG00020010660)	SCD5 (ENSCAFG00020010695)	TMEM150C (ENSCAFG00020010697)	ENOPH1 (ENSCAFG00020010698)	HNRNPDL (ENSCAFG00020010699)	HNRNPD (ENSCAFG00020010713)	ENSCAFG00020010723
Dog	MODERN SPECIES	25	ENSCAFG00845024181	ENSCAFG00845024149	MAPK10 (ENSCAFG00845023201)	ENSCAFG00845022736	ARHGAP24 (ENSCAFG00845022578)	WDFY3 (ENSCAFG00845022217)	CDS1 (ENSCAFG00845022114)	ENSCAFG00845022070	NKX6-1 (ENSCAFG00845022031)	ENSCAFG00845022001	GPAT3 (ENSCAFG00845021887)	ABRAXAS1 (ENSCAFG00845021759)	MRPS18C (ENSCAFG00845021626)	ENSCAFG00845021572	ENSCAFG00845021505	HPSE (ENSCAFG00845021381) ##22	COQ2 (ENSCAFG00845021322)	ENSCAFG00845021294	ENSCAFG00845021212	PLAC8B (ENSCAFG00845021150)	ENSCAFG00845021087	LIN54 (ENSCAFG00845020955)	THAP9 (ENSCAFG00845020757)	SEC31A (ENSCAFG00845019603)	SCD5 (ENSCAFG00845019428)	ENSCAFG00845019398	TMEM150C (ENSCAFG00845019337)	ENOPH1 (ENSCAFG00845019277)	HNRNPDL (ENSCAFG00845018924)	HNRNPD (ENSCAFG00845018743)	ENSCAFG00845018639
Red fox	MODERN SPECIES	27	SLC10A6 (ENSVVUG00000009303)	PTPN13 (ENSVVUG00000009481)	ENSVVUG00000013206	MAPK10 (ENSVVUG00000013277)	ARHGAP24 (ENSVVUG00000013997)	ENSVVUG00000014011	ENSVVUG00000014016	WDFY3 (ENSVVUG00000014061)	CDS1 (ENSVVUG00000014709)	NKX6-1 (ENSVVUG00000015641)	ENSVVUG00000015643	GPAT3 (ENSVVUG00000015664)	ABRAXAS1 (ENSVVUG00000015669)	MRPS18C (ENSVVUG00000015672)	HELQ (ENSVVUG00000015676)	HPSE (ENSVVUG00000015683) ##22	ENSVVUG00000015815	ENSVVUG00000015827	PLAC8 (ENSVVUG00000015842)	COPS4 (ENSVVUG00000015852)	LIN54 (ENSVVUG00000015863)	ENSVVUG00000015906	SEC31A (ENSVVUG00000016218)	ENSVVUG00000024645	SCD5 (ENSVVUG00000024647)	ENSVVUG00000024648	TMEM150C (ENSVVUG00000024651)	ENOPH1 (ENSVVUG00000024652)	HNRNPDL (ENSVVUG00000024653)	ENSVVUG00000024657	HNRNPD (ENSVVUG00000024658)
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00940000154426.b.b	ENSGT00940000153096.b.c.b.b.e.b	ENSGT00940000158010	ENSGT00940000165128
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00940000154426.b.b	ENSGT00940000153096.b.c.b.b.e.b	ENSGT00940000158010	ENSGT00940000155816.b
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00940000154426.b.b	ENSGT00940000153096.b.c.b.b.e.b	ENSGT00940000158010	ENSGT00940000155816.b
lion	MODERN SPECIES	4	AFF1 (ENSPLOG00000007207)	ENSPLOG00000007406	C4orf36 (ENSPLOG00000007423)	SLC10A6 (ENSPLOG00000007456)	PTPN13 (ENSPLOG00000007651)	MAPK10 (ENSPLOG00000008731)	ARHGAP24 (ENSPLOG00000009317)	WDFY3 (ENSPLOG00000009473)	CDS1 (ENSPLOG00000009762)	NKX6-1 (ENSPLOG00000009814)	GPAT3 (ENSPLOG00000009847)	ABRAXAS1 (ENSPLOG00000009906)	ENSPLOG00000009986	MRPS18C (ENSPLOG00000010023)	HELQ (ENSPLOG00000010078)	HPSE (ENSPLOG00000010262) ##22	COQ2 (ENSPLOG00000010472)	ENSPLOG00000010500	PLAC8 (ENSPLOG00000010531)	COPS4 (ENSPLOG00000010576)	LIN54 (ENSPLOG00000010731)	THAP9 (ENSPLOG00000010908)	SEC31A (ENSPLOG00000011115)	SCD5 (ENSPLOG00000011777)	TMEM150C (ENSPLOG00000011849)	ENOPH1 (ENSPLOG00000011970)	ENSPLOG00000012082	HNRNPDL (ENSPLOG00000012126)	ENSPLOG00000012354	HNRNPD (ENSPLOG00000012405)	RASGEF1B (ENSPLOG00000012759)
leopard	MODERN SPECIES	2	AFF1 (ENSPPRG00000023590)	C4orf36 (ENSPPRG00000020551)	SLC10A6 (ENSPPRG00000018990)	PTPN13 (ENSPPRG00000017293)	MAPK10 (ENSPPRG00000004716)	ENSPPRG00000003351	ARHGAP24 (ENSPPRG00000003142)	WDFY3 (ENSPPRG00000022861)	CDS1 (ENSPPRG00000014316)	NKX6-1 (ENSPPRG00000013390)	GPAT3 (ENSPPRG00000013201)	ABRAXAS1 (ENSPPRG00000012121)	ENSPPRG00000011504	MRPS18C (ENSPPRG00000011089)	HELQ (ENSPPRG00000010520)	HPSE (ENSPPRG00000008623) ##22	COQ2 (ENSPPRG00000006603)	ENSPPRG00000006145	PLAC8 (ENSPPRG00000005643)	COPS4 (ENSPPRG00000004927)	LIN54 (ENSPPRG00000004051)	THAP9 (ENSPPRG00000003398)	SEC31A (ENSPPRG00000002762)	SCD5 (ENSPPRG00000023212)	ENSPPRG00000023491	TMEM150C (ENSPPRG00000020494)	ENOPH1 (ENSPPRG00000016757)	ENSPPRG00000015090	HNRNPDL (ENSPPRG00000013787)	HNRNPD (ENSPPRG00000012258)	RASGEF1B (ENSPPRG00000011648)
Tiger	MODERN SPECIES	44	KLHL8 (ENSPTIG00000010495)	AFF1 (ENSPTIG00000011838)	ENSPTIG00000015329	C4orf36 (ENSPTIG00000015620)	SLC10A6 (ENSPTIG00000016093)	PTPN13 (ENSPTIG00000016360)	MAPK10 (ENSPTIG00000019645)	ARHGAP24 (ENSPTIG00000005664)	WDFY3 (ENSPTIG00000008434)	CDS1 (ENSPTIG00000018182)	ENSPTIG00000018677	GPAT3 (ENSPTIG00000018848)	ABRAXAS1 (ENSPTIG00000020808)	MRPS18C (ENSPTIG00000021242)	HELQ (ENSPTIG00000021394)	HPSE (ENSPTIG00000021909) ##22	COQ2 (ENSPTIG00000005683)	ENSPTIG00000007169	PLAC8 (ENSPTIG00000007562)	COPS4 (ENSPTIG00000008611)	LIN54 (ENSPTIG00000009415)	THAP9 (ENSPTIG00000010295)	SEC31A (ENSPTIG00000011026)	SCD5 (ENSPTIG00000016164)	TMEM150C (ENSPTIG00000016662)	ENOPH1 (ENSPTIG00000017297)	HNRNPDL (ENSPTIG00000018505)	HNRNPD (ENSPTIG00000019434)	ENSPTIG00000020124	RASGEF1B (ENSPTIG00000020355)	PRKG2 (ENSPTIG00000021439)
Cat	MODERN SPECIES	235	SLC10A6 (ENSFCAG00000031386)	PTPN13 (ENSFCAG00000018332)	MAPK10 (ENSFCAG00000002234)	ARHGAP24 (ENSFCAG00000028582)	ENSFCAG00000022178	WDFY3 (ENSFCAG00000002946)	CDS1 (ENSFCAG00000028459)	NKX6-1 (ENSFCAG00000028918)	GPAT3 (ENSFCAG00000019375)	ENSFCAG00000049574	ABRAXAS1 (ENSFCAG00000018503)	ENSFCAG00000036842	HELQ (ENSFCAG00000009921)	MRPS18C (ENSFCAG00000042464)	ENSFCAG00000032162	HPSE (ENSFCAG00000031098) ##22	COQ2 (ENSFCAG00000014620)	ENSFCAG00000043039	PLAC8B (ENSFCAG00000010242)	COPS4 (ENSFCAG00000022500)	LIN54 (ENSFCAG00000018320)	THAP9 (ENSFCAG00000022064)	SEC31A (ENSFCAG00000001563)	SCD5 (ENSFCAG00000026938)	TMEM150C (ENSFCAG00000028922)	ENOPH1 (ENSFCAG00000041603)	ENSFCAG00000033796	HNRNPDL (ENSFCAG00000000455)	ENSFCAG00000028355	HNRNPD (ENSFCAG00000027404)	VAMP9 (ENSFCAG00000053179)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288	ENSGT00940000159393
Equus	ANCESTRAL SPECIES	12	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288	ENSGT00940000159393
Horse	MODERN SPECIES	22	SLC10A6 (ENSECAG00000012685)	PTPN13 (ENSECAG00000015663)	MAPK10 (ENSECAG00000017280)	ARHGAP24 (ENSECAG00000012825)	ENSECAG00000033662	ENSECAG00000046931	WDFY3 (ENSECAG00000016702)	CDS1 (ENSECAG00000011962)	NKX6-1 (ENSECAG00000021703)	ENSECAG00000023481	ENSECAG00000002057	GPAT3 (ENSECAG00000023828)	ABRAXAS1 (ENSECAG00000055802)	MRPS18C (ENSECAG00000020387)	HELQ (ENSECAG00000020717)	HPSE (ENSECAG00000023599) ##22	COQ2 (ENSECAG00000012542)	PLAC8A (ENSECAG00000014585)	PLAC8B (ENSECAG00000015034)	COPS4 (ENSECAG00000015209)	LIN54 (ENSECAG00000008943)	THAP9 (ENSECAG00000016694)	SEC31A (ENSECAG00000017741)	SCD5 (ENSECAG00000014698)	TMEM150C (ENSECAG00000018024)	ENOPH1 (ENSECAG00000019612)	ENSECAG00000056998	HNRNPDL (ENSECAG00000022692)	HNRNPD (ENSECAG00000055320)	RASGEF1B (ENSECAG00000020438)	ENSECAG00000045826
Donkey	MODERN SPECIES	22	AFF1 (ENSEASG00005012760)	C4orf36 (ENSEASG00005038157)	SLC10A6 (ENSEASG00005029221)	PTPN13 (ENSEASG00005012776)	ENSEASG00005034628	MAPK10 (ENSEASG00005012811)	ARHGAP24 (ENSEASG00005013101)	WDFY3 (ENSEASG00005013124)	CDS1 (ENSEASG00005013203)	NKX6-1 (ENSEASG00005031030)	ENSEASG00005031620	GPAT3 (ENSEASG00005013215)	ABRAXAS1 (ENSEASG00005030592)	ENSEASG00005013234	HELQ (ENSEASG00005013248)	HPSE (ENSEASG00005013314) ##22	COQ2 (ENSEASG00005013339)	ENSEASG00005013341	ENSEASG00005038183	PLAC8 (ENSEASG00005013345)	COPS4 (ENSEASG00005013351)	LIN54 (ENSEASG00005013413)	THAP9 (ENSEASG00005037081)	SEC31A (ENSEASG00005013864)	SCD5 (ENSEASG00005016271)	TMEM150C (ENSEASG00005037160)	ENOPH1 (ENSEASG00005016274)	HNRNPDL (ENSEASG00005016276)	HNRNPD (ENSEASG00005016278)	RASGEF1B (ENSEASG00005016283)	PRKG2 (ENSEASG00005016287)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Greater horseshoe bat	MODERN SPECIES	23	PTPN13 (ENSRFEG00010003712)	ENSRFEG00010003614	MAPK10 (ENSRFEG00010003450)	ENSRFEG00010003378	ARHGAP24 (ENSRFEG00010003345)	ENSRFEG00010003308	WDFY3 (ENSRFEG00010003045)	CDS1 (ENSRFEG00010002893)	NKX6-1 (ENSRFEG00010002866)	ENSRFEG00010002849	ENSRFEG00010002829	GPAT3 (ENSRFEG00010002804)	ABRAXAS1 (ENSRFEG00010002770)	ENSRFEG00010002735	HELQ (ENSRFEG00010002668)	HPSE (ENSRFEG00010002595) ##22	COQ2 (ENSRFEG00010002560)	ENSRFEG00010002549	COPS4 (ENSRFEG00010002518)	LIN54 (ENSRFEG00010002453)	ENSRFEG00010002414	SEC31A (ENSRFEG00010001874)	SCD5 (ENSRFEG00010001652)	TMEM150C (ENSRFEG00010001626)	ENOPH1 (ENSRFEG00010001560)	HNRNPDL (ENSRFEG00010001497)	HNRNPD (ENSRFEG00010001426)	ENSRFEG00010001394	RASGEF1B (ENSRFEG00010001308)	PRKG2 (ENSRFEG00010001249)	BMP3 (ENSRFEG00010001224)
Microbat	MODERN SPECIES	949	HSD17B11 (ENSMLUG00000007606)	KLHL8 (ENSMLUG00000016977)	AFF1 (ENSMLUG00000000293)	SLC10A6 (ENSMLUG00000002142)	PTPN13 (ENSMLUG00000002103)	MAPK10 (ENSMLUG00000014822)	ARHGAP24 (ENSMLUG00000014817)	WDFY3 (ENSMLUG00000011620)	CDS1 (ENSMLUG00000011596)	NKX6-1 (ENSMLUG00000012584)	ENSMLUG00000023867	GPAT3 (ENSMLUG00000017070)	ABRAXAS1 (ENSMLUG00000017061)	MRPS18C (ENSMLUG00000017057)	HELQ (ENSMLUG00000017053)	HPSE (ENSMLUG00000015271) ##22	COQ2 (ENSMLUG00000015267)	ENSMLUG00000003019	ENSMLUG00000028471	COPS4 (ENSMLUG00000003011)	ENSMLUG00000008504	LIN54 (ENSMLUG00000003001)	THAP9 (ENSMLUG00000002988)	SEC31A (ENSMLUG00000004707)	SCD5 (ENSMLUG00000001326)	TMEM150C (ENSMLUG00000024231)	ENOPH1 (ENSMLUG00000014460)	HNRNPDL (ENSMLUG00000014452)	HNRNPD (ENSMLUG00000010628)	ENSMLUG00000026634	ENSMLUG00000025219
Megabat	MODERN SPECIES	7684																HPSE (ENSPVAG00000000572) ##22	COQ2 (ENSPVAG00000000570)
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b
Primates	ANCESTRAL SPECIES	10	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288	ENSGT00940000159393
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288	ENSGT00940000159393	ENSGT00940000159775
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00910000147934	ENSGT00530000063424.b	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00910000147934	ENSGT00530000063424.b.d	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT00940000155816.b
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00910000147934	ENSGT00530000063424.b.d	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00910000147934	ENSGT00530000063424.b.d	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000182882.A.a.e.b	ENSGT00940000153147.m.a.a.a.b.a.a
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00910000147934	ENSGT00530000063424.b.d	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000182882.A.a.e.b	ENSGT00940000153147.m.a.a.a.b.a.a
Pan	ANCESTRAL SPECIES	7	ENSGT00390000007133.u.a	ENSGT00940000161041	ENSGT00940000153168.C.a.b	ENSGT00550000074940	ENSGT00390000014316.c.a	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT00940000160566.d	ENSGT01030000234574.B.c.a	ENSGT00910000147934	ENSGT00530000063424.b.d	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00950000182882.A.a.e.b	ENSGT00940000153147.m.a.a.a.b.a.a
Chimpanzee	MODERN SPECIES	17	ENSPTRG00000050905	KCTD8 (ENSPTRG00000016020)	YIPF7 (ENSPTRG00000016021)	GUF1 (ENSPTRG00000016022)	GNPDA2 (ENSPTRG00000016023)	WDFY3 (ENSPTRG00000016241)	CDS1 (ENSPTRG00000016240)	NKX6-1 (ENSPTRG00000016239)	ENSPTRG00000050498	GPAT3 (ENSPTRG00000016236)	ENSPTRG00000045450	ABRAXAS1 (ENSPTRG00000023645)	ENSPTRG00000042664	MRPS18C (ENSPTRG00000016233)	HELQ (ENSPTRG00000016232)	HPSE (ENSPTRG00000016229) ##22	COQ2 (ENSPTRG00000016227)	PLAC8 (ENSPTRG00000016226)	COPS4 (ENSPTRG00000016224)	LIN54 (ENSPTRG00000016223)	THAP9 (ENSPTRG00000016222)	SEC31A (ENSPTRG00000016221)	SCD5 (ENSPTRG00000016220)	ENSPTRG00000052719	TMEM150C (ENSPTRG00000052717)	ENOPH1 (ENSPTRG00000016218)	HNRNPDL (ENSPTRG00000016217)	HNRNPD (ENSPTRG00000016215)	ENSPTRG00000048058	ENSPTRG00000048463	RASGEF1B (ENSPTRG00000016213)
Bonobo	MODERN SPECIES	17	ENSPPAG00000034319	ENSPPAG00000033254	YIPF7 (ENSPPAG00000034183)	GUF1 (ENSPPAG00000031418)	GNPDA2 (ENSPPAG00000036944)	WDFY3 (ENSPPAG00000042292)	CDS1 (ENSPPAG00000043704)	ENSPPAG00000040093	ENSPPAG00000015319	GPAT3 (ENSPPAG00000025807)	ENSPPAG00000022674	ABRAXAS1 (ENSPPAG00000029452)	ENSPPAG00000007966	MRPS18C (ENSPPAG00000037122)	HELQ (ENSPPAG00000004520)	HPSE (ENSPPAG00000037699) ##22	ENSPPAG00000038443	COQ2 (ENSPPAG00000038757)	PLAC8 (ENSPPAG00000034235)	COPS4 (ENSPPAG00000024887)	LIN54 (ENSPPAG00000042784)	THAP9 (ENSPPAG00000032240)	SEC31A (ENSPPAG00000040504)	SCD5 (ENSPPAG00000026350)	ENSPPAG00000027861	TMEM150C (ENSPPAG00000029822)	ENOPH1 (ENSPPAG00000035981)	HNRNPDL (ENSPPAG00000043177)	HNRNPD (ENSPPAG00000035750)	ENSPPAG00000002564	ENSPPAG00000037195
Human	MODERN SPECIES	16	KLHL8 (ENSG00000145332)	AFF1 (ENSG00000172493)	ENSG00000285458	C4orf36 (ENSG00000163633)	SLC10A6 (ENSG00000145283)	PTPN13 (ENSG00000163629)	MAPK10 (ENSG00000109339)	ARHGAP24 (ENSG00000138639)	WDFY3 (ENSG00000163625)	CDS1 (ENSG00000163624)	NKX6-1 (ENSG00000163623)	GPAT3 (ENSG00000138678)	ABRAXAS1 (ENSG00000163322)	MRPS18C (ENSG00000163319)	HELQ (ENSG00000163312)	HPSE (ENSG00000173083) ##22	COQ2 (ENSG00000173085)	PLAC8 (ENSG00000145287)	COPS4 (ENSG00000138663)	LIN54 (ENSG00000189308)	THAP9 (ENSG00000168152)	SEC31A (ENSG00000138674)	SCD5 (ENSG00000145284)	TMEM150C (ENSG00000249242)	ENOPH1 (ENSG00000145293)	HNRNPDL (ENSG00000152795)	HNRNPD (ENSG00000138668)	RASGEF1B (ENSG00000138670)	PRKG2 (ENSG00000138669)	BMP3 (ENSG00000152785)	CFAP299 (ENSG00000197826)
Gorilla	MODERN SPECIES	17	C4orf36 (ENSGGOG00000005547)	SLC10A6 (ENSGGOG00000007512)	PTPN13 (ENSGGOG00000025765)	MAPK10 (ENSGGOG00000003141)	ARHGAP24 (ENSGGOG00000006266)	WDFY3 (ENSGGOG00000006370)	CDS1 (ENSGGOG00000002418)	NKX6-1 (ENSGGOG00000008459)	ENSGGOG00000028145	ENSGGOG00000026515	GPAT3 (ENSGGOG00000004211)	ENSGGOG00000024919	ABRAXAS1 (ENSGGOG00000005818)	MRPS18C (ENSGGOG00000008603)	HELQ (ENSGGOG00000008598)	HPSE (ENSGGOG00000002800) ##22	COQ2 (ENSGGOG00000003610)	PLAC8 (ENSGGOG00000007464)	ENSGGOG00000039030	LIN54 (ENSGGOG00000004161)	THAP9 (ENSGGOG00000011634)	SEC31A (ENSGGOG00000011615)	SCD5 (ENSGGOG00000005096)	ENSGGOG00000023051	TMEM150C (ENSGGOG00000024883)	ENOPH1 (ENSGGOG00000003719)	HNRNPDL (ENSGGOG00000003714)	HNRNPD (ENSGGOG00000026760)	ENSGGOG00000026120	ENSGGOG00000039142	ENSGGOG00000040696
Orangutan	MODERN SPECIES	17	ENSPPYG00000039765	KLHL8 (ENSPPYG00000014911)	AFF1 (ENSPPYG00000014910)	C4orf36 (ENSPPYG00000014909)	SLC10A6 (ENSPPYG00000040769)	PTPN13 (ENSPPYG00000014908)	MAPK10 (ENSPPYG00000014907)	ARHGAP24 (ENSPPYG00000014906)	WDFY3 (ENSPPYG00000014903)	CDS1 (ENSPPYG00000014902)	NKX6-1 (ENSPPYG00000014901)	GPAT3 (ENSPPYG00000014900)	ABRAXAS1 (ENSPPYG00000036982)	MRPS18C (ENSPPYG00000025867)	HELQ (ENSPPYG00000014897)	HPSE (ENSPPYG00000014896) ##22	COQ2 (ENSPPYG00000014895)	PLAC8 (ENSPPYG00000014894)	ENSPPYG00000035037	LIN54 (ENSPPYG00000014892)	THAP9 (ENSPPYG00000014891)	SEC31A (ENSPPYG00000014890)	SCD5 (ENSPPYG00000014889)	TMEM150C (ENSPPYG00000041101)	ENOPH1 (ENSPPYG00000014887)	HNRNPDL (ENSPPYG00000014886)	HNRNPD (ENSPPYG00000014885)	RASGEF1B (ENSPPYG00000014884)	PRKG2 (ENSPPYG00000014883)	BMP3 (ENSPPYG00000014882)	CFAP299 (ENSPPYG00000014881)
Gibbon	MODERN SPECIES	24	ENSNLEG00000027926	C4orf36 (ENSNLEG00000030589)	ENSNLEG00000033518	SLC10A6 (ENSNLEG00000009412)	PTPN13 (ENSNLEG00000009323)	MAPK10 (ENSNLEG00000009285)	ARHGAP24 (ENSNLEG00000009269)	WDFY3 (ENSNLEG00000009171)	CDS1 (ENSNLEG00000009160)	ENSNLEG00000028024	NKX6-1 (ENSNLEG00000009157)	GPAT3 (ENSNLEG00000034519)	ABRAXAS1 (ENSNLEG00000009133)	MRPS18C (ENSNLEG00000009119)	HELQ (ENSNLEG00000009088)	HPSE (ENSNLEG00000009047) ##22	COQ2 (ENSNLEG00000009024)	PLAC8 (ENSNLEG00000009010)	COPS4 (ENSNLEG00000008953)	LIN54 (ENSNLEG00000008934)	THAP9 (ENSNLEG00000008931)	SEC31A (ENSNLEG00000008736)	ENSNLEG00000008733	ENSNLEG00000028521	TMEM150C (ENSNLEG00000008720)	ENOPH1 (ENSNLEG00000008688)	HNRNPDL (ENSNLEG00000008636)	ENSNLEG00000027418	HNRNPD (ENSNLEG00000008600)	ENSNLEG00000035815	ENSNLEG00000032894
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00910000147934	ENSGT00530000063424.b	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000153876.B.j.a.a.b	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT00940000155816.b
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT00940000155816.b
Macaca	ANCESTRAL SPECIES	26									ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288
Pig-tailed macaque	MODERN SPECIES	242								WDFY3 (ENSMNEG00000036931)	CDS1 (ENSMNEG00000033338)	NKX6-1 (ENSMNEG00000031476)	GPAT3 (ENSMNEG00000041593)	ABRAXAS1 (ENSMNEG00000041236)	MRPS18C (ENSMNEG00000043663)	HELQ (ENSMNEG00000038829)	ENSMNEG00000008407	HPSE (ENSMNEG00000037756) ##22	COQ2 (ENSMNEG00000041250)	PLAC8 (ENSMNEG00000039711)	COPS4 (ENSMNEG00000032812)	LIN54 (ENSMNEG00000029562)	THAP9 (ENSMNEG00000043006)	SEC31A (ENSMNEG00000045217)	SCD5 (ENSMNEG00000001171)	ENSMNEG00000033145	TMEM150C (ENSMNEG00000045241)	ENSMNEG00000039134	HNRNPDL (ENSMNEG00000045130)	ENSMNEG00000035249	HNRNPD (ENSMNEG00000028199)	ENSMNEG00000037625
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00390000017860.b	ENSGT00950000182808.a.a.b.b	ENSGT00390000012305.a	ENSGT00610000086058.a	ENSGT00530000063690.a.b.a.a	ENSGT00530000063690.a.b.a.b	ENSGT00510000048509	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00940000154298.a.b.f	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000170471.E.b.b	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a.a	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00950000185288	ENSGT00940000159393
Rhesus	MODERN SPECIES	15	ENSMMUG00000057223	ENSMMUG00000056196	OCIAD1 (ENSMMUG00000014868)	ENSMMUG00000063785	OCIAD2 (ENSMMUG00000014869)	CWH43 (ENSMMUG00000014714)	WDFY3 (ENSMMUG00000021164)	ENSMMUG00000053390 ##21	CDS1 (ENSMMUG00000021162)	NKX6-1 (ENSMMUG00000021161)	GPAT3 (ENSMMUG00000041217)	ABRAXAS1 (ENSMMUG00000030337)	MRPS18C (ENSMMUG00000015353)	HELQ (ENSMMUG00000015350)	ENSMMUG00000003986	HPSE (ENSMMUG00000013342) ##22	COQ2 (ENSMMUG00000013340)	ENSMMUG00000053321	PLAC8 (ENSMMUG00000022311)	COPS4 (ENSMMUG00000022312)	LIN54 (ENSMMUG00000008514)	THAP9 (ENSMMUG00000008510)	SEC31A (ENSMMUG00000008501)	SCD5 (ENSMMUG00000052743)	ENSMMUG00000051499	TMEM150C (ENSMMUG00000001485)	ENSMMUG00000048621	HNRNPDL (ENSMMUG00000015777)	HNRNPD (ENSMMUG00000060484)	ENSMMUG00000065133 ##21	RASGEF1B (ENSMMUG00000021074)
Crab-eating macaque	MODERN SPECIES	15	FRYL (ENSMFAG00000034687)	OCIAD1 (ENSMFAG00000043928)	OCIAD2 (ENSMFAG00000000259)	CWH43 (ENSMFAG00000000295)	WDFY3 (ENSMFAG00000036405)	ENSMFAG00000059818	CDS1 (ENSMFAG00000002059)	ENSMFAG00000055735	ENSMFAG00000051756	ENSMFAG00000060937	GPAT3 (ENSMFAG00000056266)	ABRAXAS1 (ENSMFAG00000000267)	MRPS18C (ENSMFAG00000003991)	HELQ (ENSMFAG00000040731)	ENSMFAG00000030001	HPSE (ENSMFAG00000030543) ##22	COQ2 (ENSMFAG00000033468)	ENSMFAG00000057243	PLAC8 (ENSMFAG00000001332)	COPS4 (ENSMFAG00000045246)	LIN54 (ENSMFAG00000031061)	THAP9 (ENSMFAG00000029274)	SEC31A (ENSMFAG00000001213)	SCD5 (ENSMFAG00000036661)	ENSMFAG00000062821	TMEM150C (ENSMFAG00000047550)	ENSMFAG00000062369	HNRNPDL (ENSMFAG00000052836)	HNRNPD (ENSMFAG00000031674)	RASGEF1B (ENSMFAG00000045661)	ENSMFAG00000058029
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.o	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Olive baboon	MODERN SPECIES	13	KLHL8 (ENSPANG00000011211)	AFF1 (ENSPANG00000016722)	C4orf36 (ENSPANG00000047799)	SLC10A6 (ENSPANG00000008483)	PTPN13 (ENSPANG00000016948)	MAPK10 (ENSPANG00000021440)	ARHGAP24 (ENSPANG00000008484)	ENSPANG00000038403 ##21	WDFY3 (ENSPANG00000022290)	ENSPANG00000020530	NKX6-1 (ENSPANG00000025577)	ENSPANG00000044091	GPAT3 (ENSPANG00000034933)	ENSPANG00000033931	HELQ (ENSPANG00000005130)	HPSE (ENSPANG00000017276) ##22	ENSPANG00000037682	COQ2 (ENSPANG00000009980)	ENSPANG00000004762	COPS4 (ENSPANG00000021637)	LIN54 (ENSPANG00000009917)	THAP9 (ENSPANG00000014746)	SEC31A (ENSPANG00000017184)	ENSPANG00000038027	SCD5 (ENSPANG00000045140)	ENSPANG00000012556	ENOPH1 (ENSPANG00000024164)	HNRNPDL (ENSPANG00000004761)	HNRNPD (ENSPANG00000011785)	RASGEF1B (ENSPANG00000018336)	PRKG2 (ENSPANG00000022485)
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.o	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b	ENSGT00940000159471.c.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393
Drill	MODERN SPECIES	922								WDFY3 (ENSMLEG00000034092)	CDS1 (ENSMLEG00000038190)	NKX6-1 (ENSMLEG00000044297)	ENSMLEG00000024771	ABRAXAS1 (ENSMLEG00000041419)	MRPS18C (ENSMLEG00000038884)	HELQ (ENSMLEG00000035125)	ENSMLEG00000034881	HPSE (ENSMLEG00000031402) ##22	COQ2 (ENSMLEG00000030797)	PLAC8 (ENSMLEG00000043229)	COPS4 (ENSMLEG00000035063)	LIN54 (ENSMLEG00000038107)	THAP9 (ENSMLEG00000035659)	SEC31A (ENSMLEG00000038017)
Sooty mangabey	MODERN SPECIES	507	AFF1 (ENSCATG00000039501)	C4orf36 (ENSCATG00000036591)	SLC10A6 (ENSCATG00000032176)	PTPN13 (ENSCATG00000017113)	MAPK10 (ENSCATG00000043627)	ARHGAP24 (ENSCATG00000038010)	ENSCATG00000004763	WDFY3 (ENSCATG00000028669)	CDS1 (ENSCATG00000037354)	NKX6-1 (ENSCATG00000020976)	GPAT3 (ENSCATG00000031129)	ABRAXAS1 (ENSCATG00000035244)	ENSCATG00000045101	MRPS18C (ENSCATG00000040697)	HELQ (ENSCATG00000034442)	HPSE (ENSCATG00000007349) ##22	COQ2 (ENSCATG00000030044)	PLAC8 (ENSCATG00000039322)	COPS4 (ENSCATG00000030109)	LIN54 (ENSCATG00000040443)	THAP9 (ENSCATG00000034167)	SEC31A (ENSCATG00000045203)	SCD5 (ENSCATG00000029718)	TMEM150C (ENSCATG00000043198)	ENOPH1 (ENSCATG00000041399)	HNRNPDL (ENSCATG00000038573)	HNRNPD (ENSCATG00000039829)	RASGEF1B (ENSCATG00000031794)	PRKG2 (ENSCATG00000036587)	BMP3 (ENSCATG00000014546)	CFAP299 (ENSCATG00000041881)
Vervet Monkey	MODERN SPECIES	26	KLHL8 (ENSCSAG00000004331)	AFF1 (ENSCSAG00000004333)	C4orf36 (ENSCSAG00000004334)	SLC10A6 (ENSCSAG00000004337)	PTPN13 (ENSCSAG00000004340)	ENSCSAG00000000413	MAPK10 (ENSCSAG00000004343)	ARHGAP24 (ENSCSAG00000004344)	ENSCSAG00000004347	WDFY3 (ENSCSAG00000004361)	CDS1 (ENSCSAG00000004368)	NKX6-1 (ENSCSAG00000004373)	GPAT3 (ENSCSAG00000004383)	ABRAXAS1 (ENSCSAG00000004398)	HELQ (ENSCSAG00000004405)	HPSE (ENSCSAG00000004411) ##22	COQ2 (ENSCSAG00000004424)	PLAC8 (ENSCSAG00000004430)	COPS4 (ENSCSAG00000004434)	LIN54 (ENSCSAG00000004440)	ENSCSAG00000004444	SEC31A (ENSCSAG00000004450)	SCD5 (ENSCSAG00000004452)	TMEM150C (ENSCSAG00000004455)	ENOPH1 (ENSCSAG00000004460)	HNRNPDL (ENSCSAG00000004461)	HNRNPD (ENSCSAG00000004463)	ENSCSAG00000000414	RASGEF1B (ENSCSAG00000004467)	PRKG2 (ENSCSAG00000004470)	BMP3 (ENSCSAG00000004472)
Rhinopithecus	ANCESTRAL SPECIES	293											ENSGT01030000234574.B.c.a.c	ENSGT00910000147934	ENSGT00530000063424.b	ENSGT00390000003791.g.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00390000002414.`b.a.b	ENSGT00940000158010	ENSGT01020000231727
Golden snub-nosed monkey	MODERN SPECIES	3331											ENSRROG00000000364	ENSRROG00000030470	ABRAXAS1 (ENSRROG00000029436)	MRPS18C (ENSRROG00000044334)	HELQ (ENSRROG00000045128)	HPSE (ENSRROG00000034914) ##22	COQ2 (ENSRROG00000034406)	ENSRROG00000021367	PLAC8 (ENSRROG00000044273)	COPS4 (ENSRROG00000034313)	LIN54 (ENSRROG00000042679)	THAP9 (ENSRROG00000037713)	SEC31A (ENSRROG00000043720)	SCD5 (ENSRROG00000038221)	ENSRROG00000030211	ENSRROG00000043029	TMEM150C (ENSRROG00000041038)	ENOPH1 (ENSRROG00000003108)	HNRNPDL (ENSRROG00000034174)	ENSRROG00000042691	HNRNPD (ENSRROG00000011888)
Black snub-nosed monkey	MODERN SPECIES	481												ENSRBIG00000035433	ABRAXAS1 (ENSRBIG00000037577)	MRPS18C (ENSRBIG00000041685)	HELQ (ENSRBIG00000041497)	HPSE (ENSRBIG00000041104) ##22	COQ2 (ENSRBIG00000032642)
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.g.a.a	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010.c	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00940000155816.b
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.g.a.a.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00980000202311	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010.c	ENSGT00940000153147.m.a.a.a.b.a.a	ENSGT00940000155816.b
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.g.a.a.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01100000267065	ENSGT01030000234578.A.a	ENSGT00440000039914.u.a	ENSGT00940000154426.b.b	ENSGT00940000158010.c	ENSGT00940000153147.m.a.a.a.b.a.a.j.a	ENSGT00940000155816.b	ENSGT00940000159393
Capuchin	MODERN SPECIES	64	TEX53 (ENSCCAG00000026542)	TEX48 (ENSCCAG00000036693)	ENSCCAG00000007846	TNFSF15 (ENSCCAG00000012013)	EIF3H (ENSCCAG00000019598)	TNFSF8 (ENSCCAG00000034171)	ENSCCAG00000037527	WDFY3 (ENSCCAG00000035926)	CDS1 (ENSCCAG00000036656)	ENSCCAG00000022113	NKX6-1 (ENSCCAG00000017913)	GPAT3 (ENSCCAG00000033634)	ABRAXAS1 (ENSCCAG00000019644)	ENSCCAG00000026577	HELQ (ENSCCAG00000036773)	HPSE (ENSCCAG00000010592) ##22	COQ2 (ENSCCAG00000034402)	PLAC8 (ENSCCAG00000024786)	COPS4 (ENSCCAG00000031360)	LIN54 (ENSCCAG00000019361)	THAP9 (ENSCCAG00000032516)	SEC31A (ENSCCAG00000020772)	ENSCCAG00000034517	SCD5 (ENSCCAG00000033284)	TMEM150C (ENSCCAG00000000599)	ENSCCAG00000034184	ENOPH1 (ENSCCAG00000025427)	HNRNPDL (ENSCCAG00000020777)	HNRNPD (ENSCCAG00000024528)	ENSCCAG00000036129	ENSCCAG00000035178
Bolivian squirrel monkey	MODERN SPECIES	51	AFF1 (ENSSBOG00000035401)	C4orf36 (ENSSBOG00000035411)	SLC10A6 (ENSSBOG00000035397)	ENSSBOG00000025416	PTPN13 (ENSSBOG00000034136)	ENSSBOG00000021152	MAPK10 (ENSSBOG00000029248)	ARHGAP24 (ENSSBOG00000036059)	WDFY3 (ENSSBOG00000026656)	CDS1 (ENSSBOG00000025353)	NKX6-1 (ENSSBOG00000032034)	GPAT3 (ENSSBOG00000033661)	ABRAXAS1 (ENSSBOG00000021068)	ENSSBOG00000027568	HELQ (ENSSBOG00000034314)	HPSE (ENSSBOG00000025706) ##22	COQ2 (ENSSBOG00000025382)	PLAC8 (ENSSBOG00000028760)	COPS4 (ENSSBOG00000033315)	ENSSBOG00000033305	ENSSBOG00000032347	LIN54 (ENSSBOG00000030273)	THAP9 (ENSSBOG00000032173)	ENSSBOG00000023516	SEC31A (ENSSBOG00000022511)	SCD5 (ENSSBOG00000035250)	TMEM150C (ENSSBOG00000027224)	ENSSBOG00000019290	ENOPH1 (ENSSBOG00000030492)	HNRNPD (ENSSBOG00000032881)	ENSSBOG00000028838
Marmoset	MODERN SPECIES	15	C4orf36 (ENSCJAG00000070848)	SLC10A6 (ENSCJAG00000006010)	ENSCJAG00000077823	PTPN13 (ENSCJAG00000005723)	MAPK10 (ENSCJAG00000005621)	ARHGAP24 (ENSCJAG00000005600)	ENSCJAG00000080521	WDFY3 (ENSCJAG00000005382)	CDS1 (ENSCJAG00000044197)	NKX6-1 (ENSCJAG00000005335)	ENSCJAG00000082079	GPAT3 (ENSCJAG00000005314)	ABRAXAS1 (ENSCJAG00000005294)	ENSCJAG00000042247	HELQ (ENSCJAG00000005247)	HPSE (ENSCJAG00000005194) ##22	ENSCJAG00000053040	COQ2 (ENSCJAG00000005180)	ENSCJAG00000072222	ENSCJAG00000000640	PLAC8 (ENSCJAG00000068263)	COPS4 (ENSCJAG00000005067)	LIN54 (ENSCJAG00000005110)	THAP9 (ENSCJAG00000005095)	SEC31A (ENSCJAG00000004799)	ENSCJAG00000005062	ENSCJAG00000072138	SCD5 (ENSCJAG00000039485)	TMEM150C (ENSCJAG00000081174)	ENOPH1 (ENSCJAG00000048699)	ENSCJAG00000071687
Mas night monkey	MODERN SPECIES	406											GPAT3 (ENSANAG00000029263)	ABRAXAS1 (ENSANAG00000036409)	ENSANAG00000037009	ENSANAG00000028055	HELQ (ENSANAG00000033513)	HPSE (ENSANAG00000038449) ##22	COQ2 (ENSANAG00000035844)	ENSANAG00000013626	PLAC8 (ENSANAG00000000767)	COPS4 (ENSANAG00000029510)	LIN54 (ENSANAG00000026425)	ENSANAG00000027363	THAP9 (ENSANAG00000024482)	SEC31A (ENSANAG00000022299)	SCD5 (ENSANAG00000031198)	ENSANAG00000033681	TMEM150C (ENSANAG00000000048)	ENOPH1 (ENSANAG00000025974)	ENSANAG00000029054	HNRNPD (ENSANAG00000035221)	ENSANAG00000034721
Tarsier	MODERN SPECIES	5240												GPAT3 (ENSTSYG00000006614)	ABRAXAS1 (ENSTSYG00000012928)	MRPS18C (ENSTSYG00000012924)	HELQ (ENSTSYG00000012900)	HPSE (ENSTSYG00000000619) ##22	ENSTSYG00000002741	COQ2 (ENSTSYG00000013801)
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Lemuriformes	ANCESTRAL SPECIES	52	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Lemuriformes_a	ANCESTRAL SPECIES	64	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Coquerels sifaka	MODERN SPECIES	371	KLHL8 (ENSPCOG00000018983)	AFF1 (ENSPCOG00000027339)	C4orf36 (ENSPCOG00000023888)	SLC10A6 (ENSPCOG00000026098)	PTPN13 (ENSPCOG00000023990)	ENSPCOG00000017982	MAPK10 (ENSPCOG00000023059)	ARHGAP24 (ENSPCOG00000000502)	WDFY3 (ENSPCOG00000022708)	CDS1 (ENSPCOG00000017585)	NKX6-1 (ENSPCOG00000026560)	GPAT3 (ENSPCOG00000015710)	ABRAXAS1 (ENSPCOG00000024017)	MRPS18C (ENSPCOG00000017634)	HELQ (ENSPCOG00000001114)	HPSE (ENSPCOG00000028547) ##22	COQ2 (ENSPCOG00000016807)	ENSPCOG00000024594	COPS4 (ENSPCOG00000019543)	LIN54 (ENSPCOG00000016222)	THAP9 (ENSPCOG00000019315)	ENSPCOG00000025847	ENSPCOG00000007656	ENSPCOG00000026115	SCD5 (ENSPCOG00000024838)	TMEM150C (ENSPCOG00000019478)	ENOPH1 (ENSPCOG00000014984)	HNRNPDL (ENSPCOG00000019831)	HNRNPD (ENSPCOG00000021331)	ENSPCOG00000024543	RASGEF1B (ENSPCOG00000019377)
Greater bamboo lemur	MODERN SPECIES	64	AFF1 (ENSPSMG00000016833)	C4orf36 (ENSPSMG00000016893)	SLC10A6 (ENSPSMG00000016898)	PTPN13 (ENSPSMG00000017328)	MAPK10 (ENSPSMG00000017774)	ENSPSMG00000017824	ARHGAP24 (ENSPSMG00000017866)	ENSPSMG00000017913	WDFY3 (ENSPSMG00000018028)	CDS1 (ENSPSMG00000018082)	NKX6-1 (ENSPSMG00000018100)	GPAT3 (ENSPSMG00000018113)	ABRAXAS1 (ENSPSMG00000018130)	MRPS18C (ENSPSMG00000018158)	HELQ (ENSPSMG00000018202)	HPSE (ENSPSMG00000018251) ##22	COQ2 (ENSPSMG00000018286)	ENSPSMG00000018300	PLAC8 (ENSPSMG00000018310)	COPS4 (ENSPSMG00000018382)	LIN54 (ENSPSMG00000018520)	THAP9 (ENSPSMG00000018581)	SEC31A (ENSPSMG00000019006)	SCD5 (ENSPSMG00000019517)	TMEM150C (ENSPSMG00000019533)	ENOPH1 (ENSPSMG00000019574)	HNRNPDL (ENSPSMG00000019624)	RASGEF1B (ENSPSMG00000019686)	PRKG2 (ENSPSMG00000019732)	BMP3 (ENSPSMG00000019744)	CFAP299 (ENSPSMG00000019753)
Mouse lemur	MODERN SPECIES	129										ENSMICG00000028116	ENSMICG00000047419	GPAT3 (ENSMICG00000000436)	ABRAXAS1 (ENSMICG00000004908)	ENSMICG00000032609	HELQ (ENSMICG00000026967)	HPSE (ENSMICG00000031866) ##22	COQ2 (ENSMICG00000041881)	PLAC8 (ENSMICG00000046029)	COPS4 (ENSMICG00000032901)	ENSMICG00000008553	THAP9 (ENSMICG00000043018)	SEC31A (ENSMICG00000036189)	HNRNPD (ENSMICG00000010984)	HNRNPDL (ENSMICG00000001445)	ENOPH1 (ENSMICG00000001452)	TMEM150C (ENSMICG00000033462)	PRICKLE2 (ENSMICG00000033980)	PSMD6 (ENSMICG00000014542)	ENSMICG00000017888	FAM3D (ENSMICG00000035637)	CFAP20DC (ENSMICG00000012436)
Bushbaby	MODERN SPECIES	154	HSD17B13 (ENSOGAG00000009634)	KLHL8 (ENSOGAG00000009630)	ENSOGAG00000031299	ENSOGAG00000009622	SLC10A6 (ENSOGAG00000004425)	ENSOGAG00000030382	ENSOGAG00000027610	MAPK10 (ENSOGAG00000014897)	ARHGAP24 (ENSOGAG00000014895)	ENSOGAG00000015396	CDS1 (ENSOGAG00000032846)	NKX6-1 (ENSOGAG00000000028)	GPAT3 (ENSOGAG00000003516)	ABRAXAS1 (ENSOGAG00000014197)	HELQ (ENSOGAG00000014188)	HPSE (ENSOGAG00000017234) ##22	COQ2 (ENSOGAG00000002235)	ENSOGAG00000032382	PLAC8 (ENSOGAG00000017232)	COPS4 (ENSOGAG00000027198)	LIN54 (ENSOGAG00000002512)	THAP9 (ENSOGAG00000002510)	SEC31A (ENSOGAG00000002506)	SCD5 (ENSOGAG00000002504)	TMEM150C (ENSOGAG00000032649)	ENOPH1 (ENSOGAG00000002502)	HNRNPDL (ENSOGAG00000002501)	HNRNPD (ENSOGAG00000004075)	RASGEF1B (ENSOGAG00000000086)	PRKG2 (ENSOGAG00000011251)	BMP3 (ENSOGAG00000011248)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393
Glires	ANCESTRAL SPECIES	8	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393
Rodentia	ANCESTRAL SPECIES	13	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000167166	ENSGT00900000143161	ENSGT00940000155816.b
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000167166	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393
Kangaroo rat	MODERN SPECIES	368							Mapk10 (ENSDORG00000010086)	Arhgap24 (ENSDORG00000010084)	ENSDORG00000011115	Cds1 (ENSDORG00000003056)	Nkx6-1 (ENSDORG00000004413)	ENSDORG00000008939	Abraxas1 (ENSDORG00000012750)	Mrps18c (ENSDORG00000012749)	Helq (ENSDORG00000012747)	Hpse (ENSDORG00000001494) ##22	ENSDORG00000010454	Plac8 (ENSDORG00000002455)	Cops4 (ENSDORG00000027841)	Lin54 (ENSDORG00000002968)	ENSDORG00000010518	ENSDORG00000015366	Tmem150c (ENSDORG00000028142)	Enoph1 (ENSDORG00000000973)	ENSDORG00000000968	Hnrnpd (ENSDORG00000012507)	ENSDORG00000028788	Rasgef1b (ENSDORG00000008210)	Prkg2 (ENSDORG00000008384)	Bmp3 (ENSDORG00000008380)	Cfap299 (ENSDORG00000000888)
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000167166	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393
Muroidea	ANCESTRAL SPECIES	17	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000167166	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Chinese hamster chok1gshd	MODERN SPECIES	76	1700016H13Rik (ENSCGRG00001009503)	Slc10a6 (ENSCGRG00001004482)	Ptpn13 (ENSCGRG00001022752)	ENSCGRG00001000851	ENSCGRG00001000121	Mapk10 (ENSCGRG00001014731)	Arhgap24 (ENSCGRG00001022938)	Wdfy3 (ENSCGRG00001020063)	Cds1 (ENSCGRG00001009233)	Nkx6-1 (ENSCGRG00001015708)	ENSCGRG00001010629	Gpat3 (ENSCGRG00001017757)	Abraxas1 (ENSCGRG00001009765)	Mrps18c (ENSCGRG00001000103)	Helq (ENSCGRG00001024451)	Hpse (ENSCGRG00001015338) ##22	Coq2 (ENSCGRG00001019305)	ENSCGRG00001016525	Plac8 (ENSCGRG00001015032)	Cops4 (ENSCGRG00001000211)	Lin54 (ENSCGRG00001018316)	Sec31a (ENSCGRG00001006894)	Tmem150c (ENSCGRG00001009643)	ENOPH1 (ENSCGRG00001018064)	Hnrnpdl (ENSCGRG00001010960)	Hnrnpd (ENSCGRG00001014634)	Vamp9 (ENSCGRG00001023846)	ENSCGRG00001021743	Rasgef1b (ENSCGRG00001019748)	Prkg2 (ENSCGRG00001021769)	Bmp3 (ENSCGRG00001013590)
Golden Hamster	MODERN SPECIES	679	Hsd17b13 (ENSMAUG00000000594)	Klhl8 (ENSMAUG00000018112)	Aff1 (ENSMAUG00000010241)	1700016H13Rik (ENSMAUG00000008304)	Slc10a6 (ENSMAUG00000006807)	Ptpn13 (ENSMAUG00000000699)	Mapk10 (ENSMAUG00000017023)	Arhgap24 (ENSMAUG00000014737)	Wdfy3 (ENSMAUG00000008899)	Cds1 (ENSMAUG00000000198)	Nkx6-1 (ENSMAUG00000019458)	ENSMAUG00000015928	Abraxas1 (ENSMAUG00000004180)	ENSMAUG00000001167	Helq (ENSMAUG00000000249)	Hpse (ENSMAUG00000014670) ##22	ENSMAUG00000013830	Lin54 (ENSMAUG00000012291)	ENSMAUG00000013778
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547	ENSGT00940000158449
Prairie vole	MODERN SPECIES	349	Klhl8 (ENSMOCG00000010742)	Aff1 (ENSMOCG00000017389)	1700016H13Rik (ENSMOCG00000015080)	Slc10a6 (ENSMOCG00000003945)	Ptpn13 (ENSMOCG00000021839)	ENSMOCG00000018036	Mapk10 (ENSMOCG00000014375)	Arhgap24 (ENSMOCG00000002718)	Wdfy3 (ENSMOCG00000001865)	Cds1 (ENSMOCG00000003586)	Nkx6-1 (ENSMOCG00000001725)	ENSMOCG00000000258	Abraxas1 (ENSMOCG00000022766)	ENSMOCG00000015591	Helq (ENSMOCG00000014354)	Hpse (ENSMOCG00000018235) ##22	ENSMOCG00000015925	Plac8 (ENSMOCG00000013684)	ENSMOCG00000009783	Cops4 (ENSMOCG00000021257)	Lin54 (ENSMOCG00000022873)	ENSMOCG00000019564	ENSMOCG00000004424	Tmem150c (ENSMOCG00000001764)	Enoph1 (ENSMOCG00000008624)	Hnrnpdl (ENSMOCG00000015928)	Hnrnpd (ENSMOCG00000021398)	ENSMOCG00000010622	Rasgef1b (ENSMOCG00000021595)	Prkg2 (ENSMOCG00000018972)	Bmp3 (ENSMOCG00000000488)
Northern American deer mouse	MODERN SPECIES	1	Aff1 (ENSPEMG00000000785)	1700016H13Rik (ENSPEMG00000026458)	Slc10a6 (ENSPEMG00000016611)	Ptpn13 (ENSPEMG00000016673)	Mapk10 (ENSPEMG00000011205)	Arhgap24 (ENSPEMG00000007830)	Wdfy3 (ENSPEMG00000016957)	ENSPEMG00000025914	Cds1 (ENSPEMG00000017042)	Nkx6-1 (ENSPEMG00000015701)	ENSPEMG00000031139	Gpat3 (ENSPEMG00000014850)	Abraxas1 (ENSPEMG00000009827)	Mrps18c (ENSPEMG00000008390)	Helq (ENSPEMG00000007325)	Hpse (ENSPEMG00000005247) ##22	Coq2 (ENSPEMG00000002210)	ENSPEMG00000013839	ENSPEMG00000014517	Cops4 (ENSPEMG00000013213)	Lin54 (ENSPEMG00000011976)	Sec31a (ENSPEMG00000010107)	Tmem150c (ENSPEMG00000008360)	Enoph1 (ENSPEMG00000006785)	Hnrnpdl (ENSPEMG00000016545)	Hnrnpd (ENSPEMG00000014804)	Vamp9 (ENSPEMG00000014065)	Rasgef1b (ENSPEMG00000000367)	Prkg2 (ENSPEMG00000019159)	Bmp3 (ENSPEMG00000018921)	ENSPEMG00000024918
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Mus	ANCESTRAL SPECIES	14	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.t	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.j	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.t	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.j	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.t.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B.j	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00860000136197	ENSGT00940000158010	ENSGT00940000165128	ENSGT00900000143161	ENSGT00940000155816.b	ENSGT00940000159393
Steppe mouse	MODERN SPECIES	3359						Mapk10 (ENSMSIG00000000530)	Arhgap24 (ENSMSIG00000001047)	ENSMSIG00000001116	Wdfy3 (ENSMSIG00000001158)	Cds1 (ENSMSIG00000001600)	Nkx6-1 (ENSMSIG00000001674)	Gpat3 (ENSMSIG00000001712)	Abraxas1 (ENSMSIG00000001786)	ENSMSIG00000001831	Helq (ENSMSIG00000001906)	Hpse (ENSMSIG00000002003) ##22	ENSMSIG00000002040	Plac8 (ENSMSIG00000002072)	Cops4 (ENSMSIG00000002210)	Lin54 (ENSMSIG00000002294)	Sec31a (ENSMSIG00000002575)	ENSMSIG00000003017	ENSMSIG00000003044	Tmem150c (ENSMSIG00000003065)	Enoph1 (ENSMSIG00000003144)	Hnrnpdl (ENSMSIG00000003210)	Hnrnpd (ENSMSIG00000003308)	Vamp9 (ENSMSIG00000003510)	Rasgef1b (ENSMSIG00000003577)	ENSMSIG00000003742	Prkg2 (ENSMSIG00000003794)
spretus	MODERN SPECIES	14	Hsd17b13 (MGP_SPRETEiJ_G0028468)	Klhl8 (MGP_SPRETEiJ_G0028467)	Aff1 (MGP_SPRETEiJ_G0028466)	1700016H13Rik (MGP_SPRETEiJ_G0028465)	Slc10a6 (MGP_SPRETEiJ_G0028464)	Ptpn13 (MGP_SPRETEiJ_G0028463)	Mapk10 (MGP_SPRETEiJ_G0028462)	Arhgap24 (MGP_SPRETEiJ_G0028461)	Wdfy3 (MGP_SPRETEiJ_G0028460)	Cds1 (MGP_SPRETEiJ_G0028459)	Nkx6-1 (MGP_SPRETEiJ_G0028458)	Gpat3 (MGP_SPRETEiJ_G0028457)	Abraxas1 (MGP_SPRETEiJ_G0028456)	Mrps18c (MGP_SPRETEiJ_G0028455)	Helq (MGP_SPRETEiJ_G0028454)	Hpse (MGP_SPRETEiJ_G0028453) ##22	Coq2 (MGP_SPRETEiJ_G0028452)	Plac8 (MGP_SPRETEiJ_G0028451)	Cops4 (MGP_SPRETEiJ_G0028450)	Lin54 (MGP_SPRETEiJ_G0028449)	Sec31a (MGP_SPRETEiJ_G0028448)	Tmem150c (MGP_SPRETEiJ_G0028447)	Enoph1 (MGP_SPRETEiJ_G0028446)	Hnrnpdl (MGP_SPRETEiJ_G0028445)	MGP_SPRETEiJ_G0028444	Hnrnpd (MGP_SPRETEiJ_G0028443)	MGP_SPRETEiJ_G0028442	Rasgef1b (MGP_SPRETEiJ_G0028441)	Prkg2 (MGP_SPRETEiJ_G0028440)	Bmp3 (MGP_SPRETEiJ_G0028439)	MGP_SPRETEiJ_G0028438
Mouse	MODERN SPECIES	14	Hsd17b13 (ENSMUSG00000034528)	Klhl8 (ENSMUSG00000029312)	Aff1 (ENSMUSG00000029313)	1700016H13Rik (ENSMUSG00000029320)	Slc10a6 (ENSMUSG00000029321)	Ptpn13 (ENSMUSG00000034573)	Mapk10 (ENSMUSG00000046709)	Arhgap24 (ENSMUSG00000057315)	Wdfy3 (ENSMUSG00000043940)	Cds1 (ENSMUSG00000029330)	Nkx6-1 (ENSMUSG00000035187)	Gpat3 (ENSMUSG00000029314)	Abraxas1 (ENSMUSG00000035234)	Mrps18c (ENSMUSG00000016833)	Helq (ENSMUSG00000035266)	Hpse (ENSMUSG00000035273) ##22	Coq2 (ENSMUSG00000029319)	Plac8 (ENSMUSG00000029322)	Cops4 (ENSMUSG00000035297)	Lin54 (ENSMUSG00000118665)	Sec31a (ENSMUSG00000035325)	Tmem150c (ENSMUSG00000050640)	Enoph1 (ENSMUSG00000029326)	Hnrnpdl (ENSMUSG00000029328)	Hnrnpd (ENSMUSG00000000568)	Vamp9 (ENSMUSG00000105078)	Rasgef1b (ENSMUSG00000089809)	Prkg2 (ENSMUSG00000029334)	Bmp3 (ENSMUSG00000029335)	Cfap299 (ENSMUSG00000057816)	Fgf5 (ENSMUSG00000029337)
Ryukyu mouse	MODERN SPECIES	14	Hsd17b13 (MGP_CAROLIEiJ_G0027471)	Klhl8 (MGP_CAROLIEiJ_G0027470)	Aff1 (MGP_CAROLIEiJ_G0027469)	1700016H13Rik (MGP_CAROLIEiJ_G0027468)	Slc10a6 (MGP_CAROLIEiJ_G0027467)	Ptpn13 (MGP_CAROLIEiJ_G0027466)	Mapk10 (MGP_CAROLIEiJ_G0027465)	Arhgap24 (MGP_CAROLIEiJ_G0027464)	Wdfy3 (MGP_CAROLIEiJ_G0027463)	Cds1 (MGP_CAROLIEiJ_G0027462)	Nkx6-1 (MGP_CAROLIEiJ_G0027461)	Gpat3 (MGP_CAROLIEiJ_G0027460)	Abraxas1 (MGP_CAROLIEiJ_G0027459)	MGP_CAROLIEiJ_G0027458	Helq (MGP_CAROLIEiJ_G0027457)	Hpse (MGP_CAROLIEiJ_G0027456) ##22	Coq2 (MGP_CAROLIEiJ_G0027455)	Plac8 (MGP_CAROLIEiJ_G0027454)	Cops4 (MGP_CAROLIEiJ_G0027453)	Lin54 (MGP_CAROLIEiJ_G0027452)	Sec31a (MGP_CAROLIEiJ_G0027451)	Tmem150c (MGP_CAROLIEiJ_G0027450)	Enoph1 (MGP_CAROLIEiJ_G0027449)	MGP_CAROLIEiJ_G0027448	MGP_CAROLIEiJ_G0027447	Hnrnpd (MGP_CAROLIEiJ_G0027446)	MGP_CAROLIEiJ_G0027445	Rasgef1b (MGP_CAROLIEiJ_G0027444)	Prkg2 (MGP_CAROLIEiJ_G0027443)	Bmp3 (MGP_CAROLIEiJ_G0027442)	MGP_CAROLIEiJ_G0027441
Shrew mouse	MODERN SPECIES	4	Hsd17b13 (MGP_PahariEiJ_G0017249)	Klhl8 (MGP_PahariEiJ_G0017248)	Aff1 (MGP_PahariEiJ_G0017247)	1700016H13Rik (MGP_PahariEiJ_G0017246)	Slc10a6 (MGP_PahariEiJ_G0017245)	Ptpn13 (MGP_PahariEiJ_G0017244)	Mapk10 (MGP_PahariEiJ_G0017243)	Arhgap24 (MGP_PahariEiJ_G0017242)	MGP_PahariEiJ_G0017241	Cds1 (MGP_PahariEiJ_G0017240)	Nkx6-1 (MGP_PahariEiJ_G0017239)	Gpat3 (MGP_PahariEiJ_G0017238)	Abraxas1 (MGP_PahariEiJ_G0017237)	Mrps18c (MGP_PahariEiJ_G0017236)	Helq (MGP_PahariEiJ_G0017235)	Hpse (MGP_PahariEiJ_G0017234) ##22	Coq2 (MGP_PahariEiJ_G0017233)	Plac8 (MGP_PahariEiJ_G0017232)	Cops4 (MGP_PahariEiJ_G0017231)	Lin54 (MGP_PahariEiJ_G0017230)	Sec31a (MGP_PahariEiJ_G0017229)	Tmem150c (MGP_PahariEiJ_G0017228)	MGP_PahariEiJ_G0017227	Hnrnpdl (MGP_PahariEiJ_G0017226)	MGP_PahariEiJ_G0017225	Hnrnpd (MGP_PahariEiJ_G0017224)	MGP_PahariEiJ_G0017223	Rasgef1b (MGP_PahariEiJ_G0017222)	Prkg2 (MGP_PahariEiJ_G0017221)	Bmp3 (MGP_PahariEiJ_G0017220)	MGP_PahariEiJ_G0017219
Rat	MODERN SPECIES	5	Slc10a6 (ENSRNOG00000002057)	Ptpn13 (ENSRNOG00000002061)	Ndufb4l1 (ENSRNOG00000034289)	Mapk10 (ENSRNOG00000002079)	LOC120096563 (ENSRNOG00000050982)	ENSRNOG00000068459	Arhgap24 (ENSRNOG00000056944)	Wdfy3 (ENSRNOG00000061121)	Cds1 (ENSRNOG00000002142)	Nkx6-1 (ENSRNOG00000002149)	Gpat3 (ENSRNOG00000002159)	Mrps18c (ENSRNOG00000002178)	Abraxas1 (ENSRNOG00000002165)	Helq (ENSRNOG00000002181)	ENSRNOG00000071057	Hpse (ENSRNOG00000002188) ##22	ENSRNOG00000070232	Coq2 (ENSRNOG00000002194)	LOC100363472 (ENSRNOG00000002200)	LOC103693725 (ENSRNOG00000056621)	Plac8 (ENSRNOG00000002217)	Cops4 (ENSRNOG00000023650)	Lin54 (ENSRNOG00000002203)	Sec31a (ENSRNOG00000002251)	Tmem150c (ENSRNOG00000002258)	Enoph1 (ENSRNOG00000002262)	Hnrnpdl (ENSRNOG00000002270)	Hnrnpd (ENSRNOG00000002292)	LOC102557303 (ENSRNOG00000053017)	Rasgef1b (ENSRNOG00000002345)	Prkg2 (ENSRNOG00000002361)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1351																Hpse (ENSNGAG00000018587) ##22	Coq2 (ENSNGAG00000000054)	Plac8 (ENSNGAG00000000532)	Cops4 (ENSNGAG00000005820)	ENSNGAG00000006175	Lin54 (ENSNGAG00000010863)	ENSNGAG00000011892	ENSNGAG00000014734	Tmem150c (ENSNGAG00000014973)	Enoph1 (ENSNGAG00000015500)	Hnrnpdl (ENSNGAG00000015740)	Ints13 (ENSNGAG00000016180)	ENSNGAG00000016575	Tm7sf3 (ENSNGAG00000018407)	Med21 (ENSNGAG00000000342)	Stk38l (ENSNGAG00000010154)
Lesser Egyptian jerboa	MODERN SPECIES	51													ENSJJAG00000015454	Abraxas1 (ENSJJAG00000023566)	Mrps18c (ENSJJAG00000022437)	Hpse (ENSJJAG00000011839) ##22	ENSJJAG00000014999	Plac8 (ENSJJAG00000014325)	ENSJJAG00000022537	Cops4 (ENSJJAG00000021598)	Lin54 (ENSJJAG00000020052)	Sec31a (ENSJJAG00000015705)	ENSJJAG00000023656	Tmem150c (ENSJJAG00000014488)	ENSJJAG00000001501	ENSJJAG00000021673	Hnrnpd (ENSJJAG00000023387)	ENSJJAG00000023150	Rasgef1b (ENSJJAG00000023286)	Prkg2 (ENSJJAG00000017807)	Bmp3 (ENSJJAG00000007207)
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000167166	ENSGT00900000143161	ENSGT00940000155816.b
Hystricomorpha	ANCESTRAL SPECIES	61	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.p	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000000796	ENSHGLG00000041678	WDFY3 (ENSHGLG00000002966)	CDS1 (ENSHGLG00000049384)	ENSHGLG00000004589	ENSHGLG00000004204	ENSHGLG00000035706	ENSHGLG00000037327	ENSHGLG00000045281	ENSHGLG00000043322	Gpat3 (ENSHGLG00000003421)	ENSHGLG00000037131	ENSHGLG00000036220	ENSHGLG00000036989	HELQ (ENSHGLG00000019137)	HPSE (ENSHGLG00000018930) ##22	ENSHGLG00000016197	ENSHGLG00000049647	PLAC8 (ENSHGLG00000016121)	COPS4 (ENSHGLG00000044616)	ENSHGLG00000013973	SHCBP1 (ENSHGLG00000049778)	ENSHGLG00000001863	ORC6 (ENSHGLG00000040263)	MYLK3 (ENSHGLG00000002008)	ENSHGLG00000009681	ENSHGLG00000045542	ENSHGLG00000002081	ENSHGLG00000041565	ENSHGLG00000049077	ENSHGLG00000002105
Hystricomorpha_a	ANCESTRAL SPECIES	68	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.p	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000158682	ENSGT00940000154837.f	ENSGT00530000063553.b.b	ENSGT00940000159578	ENSGT00950000183118.B	ENSGT00390000013367	ENSGT00940000156041	ENSGT00940000154688.b	ENSGT00940000159061	ENSGT00390000009505	ENSGT00940000160007
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791.p	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000158682	ENSGT00940000154837.f	ENSGT00530000063553.b.b	ENSGT00940000159578	ENSGT00950000183118.B	ENSGT00390000013367	ENSGT00940000156041	ENSGT00940000154688.b	ENSGT00940000159061	ENSGT00910000144305	ENSGT00940000154674
Long-tailed chinchilla	MODERN SPECIES	181	HSD17B11 (ENSCLAG00000004877)	HSD17B13 (ENSCLAG00000004944)	KLHL8 (ENSCLAG00000005233)	AFF1 (ENSCLAG00000005537)	C4orf36 (ENSCLAG00000005964)	SLC10A6 (ENSCLAG00000006091)	PTPN13 (ENSCLAG00000006187)	MAPK10 (ENSCLAG00000007752)	ARHGAP24 (ENSCLAG00000004468)	WDFY3 (ENSCLAG00000004977)	CDS1 (ENSCLAG00000006900)	GPAT3 (ENSCLAG00000007713)	ABRAXAS1 (ENSCLAG00000008039)	ENSCLAG00000008205	HELQ (ENSCLAG00000004733)	HPSE (ENSCLAG00000004879) ##22	ENSCLAG00000004962	PLAC8 (ENSCLAG00000005017)	COPS4 (ENSCLAG00000005060)	LIN54 (ENSCLAG00000006502)	N4BP1 (ENSCLAG00000006600)	SIAH1 (ENSCLAG00000006639)	LONP2 (ENSCLAG00000006722)	ABCC12 (ENSCLAG00000006887)	PHKB (ENSCLAG00000007130)	ITFG1 (ENSCLAG00000007967)	NETO2 (ENSCLAG00000008739)	ENSCLAG00000002868	GPT2 (ENSCLAG00000003182)	ENSCLAG00000003230	HLTF (ENSCLAG00000003408)
Degu	MODERN SPECIES	69	ENSODEG00000019462	MAPK10 (ENSODEG00000007899)	ARHGAP24 (ENSODEG00000009471)	ENSODEG00000007654	WDFY3 (ENSODEG00000007240)	CDS1 (ENSODEG00000008599)	NKX6-1 (ENSODEG00000009272)	ENSODEG00000007028	ENSODEG00000007416	ENSODEG00000019508	ENSODEG00000008639	ENSODEG00000008636	ABRAXAS1 (ENSODEG00000009343)	ENSODEG00000007599	HELQ (ENSODEG00000008738)	HPSE (ENSODEG00000007894) ##22	COQ2 (ENSODEG00000007764)	PLAC8 (ENSODEG00000008537)	ENSODEG00000008788	LIN54 (ENSODEG00000009071)	N4BP1 (ENSODEG00000009642)	SIAH1 (ENSODEG00000010400)	ENSODEG00000007971	ENSODEG00000009232	ABCC12 (ENSODEG00000010786)	PHKB (ENSODEG00000008822)	ITFG1 (ENSODEG00000007883)	ENSODEG00000008342	NETO2 (ENSODEG00000008553)	ENSODEG00000007831	GPT2 (ENSODEG00000008090)
Guinea pig	MODERN SPECIES	33	HSD17B13 (ENSCPOG00000014141)	KLHL8 (ENSCPOG00000001491)	AFF1 (ENSCPOG00000034568)	ENSCPOG00000024866	C4orf36 (ENSCPOG00000003504)	SLC10A6 (ENSCPOG00000010363)	PTPN13 (ENSCPOG00000007122)	MAPK10 (ENSCPOG00000013605)	ARHGAP24 (ENSCPOG00000012796)	WDFY3 (ENSCPOG00000006746)	CDS1 (ENSCPOG00000030064)	GPAT3 (ENSCPOG00000014802)	ABRAXAS1 (ENSCPOG00000001374)	MRPS18C (ENSCPOG00000009198)	HELQ (ENSCPOG00000009180)	HPSE (ENSCPOG00000001853) ##22	COQ2 (ENSCPOG00000035211)	PLAC8 (ENSCPOG00000026026)	COPS4 (ENSCPOG00000020170)	LIN54 (ENSCPOG00000001139)	N4BP1 (ENSCPOG00000022635)	SIAH1 (ENSCPOG00000020708)	LONP2 (ENSCPOG00000003859)	ABCC12 (ENSCPOG00000006873)	PHKB (ENSCPOG00000006408)	ITFG1 (ENSCPOG00000006398)	NETO2 (ENSCPOG00000011813)	ENSCPOG00000006955	GPT2 (ENSCPOG00000013685)	C16orf87 (ENSCPOG00000010228)	MYLK3 (ENSCPOG00000003786)
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775
Marmotini	ANCESTRAL SPECIES	47	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000170703	ENSGT01030000234578.A.a	ENSGT00440000039914.q	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128	ENSGT00940000155816.b	ENSGT00940000159393
Marmotini_b	ANCESTRAL SPECIES	187									ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT00940000170703	ENSGT01030000234578.A.a	ENSGT00440000039914.q	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000165128
Arctic ground squirrel	MODERN SPECIES	514											NKX6-1 (ENSUPAG00010007077)	GPAT3 (ENSUPAG00010007091)	ABRAXAS1 (ENSUPAG00010007140)	MRPS18C (ENSUPAG00010007169)	HELQ (ENSUPAG00010007182)	HPSE (ENSUPAG00010007218) ##22
Squirrel	MODERN SPECIES	338									WDFY3 (ENSSTOG00000009759)	CDS1 (ENSSTOG00000009750)	NKX6-1 (ENSSTOG00000012588)	GPAT3 (ENSSTOG00000019561)	ABRAXAS1 (ENSSTOG00000008003)	MRPS18C (ENSSTOG00000007989)	HELQ (ENSSTOG00000025285)	HPSE (ENSSTOG00000007933) ##22	ENSSTOG00000007921	PLAC8 (ENSSTOG00000019726)	COPS4 (ENSSTOG00000023635)	LIN54 (ENSSTOG00000012482)	THAP9 (ENSSTOG00000012475)	SEC31A (ENSSTOG00000012452)	SCD5 (ENSSTOG00000006758)	TMEM150C (ENSSTOG00000024914)	ENSSTOG00000013987	HNRNPDL (ENSSTOG00000013979)	HNRNPD (ENSSTOG00000013970)	ENSSTOG00000031148
Alpin marmot	MODERN SPECIES	59					MAPK10 (ENSMMMG00000003638)	ARHGAP24 (ENSMMMG00000003903)	WDFY3 (ENSMMMG00000004054)	CDS1 (ENSMMMG00000004652)	ENSMMMG00000004675	NKX6-1 (ENSMMMG00000004682)	GPAT3 (ENSMMMG00000004703)	ABRAXAS1 (ENSMMMG00000004749)	MRPS18C (ENSMMMG00000004764)	ENSMMMG00000004773	ENSMMMG00000004782	HPSE (ENSMMMG00000004794) ##22	COQ2 (ENSMMMG00000004820)	PLAC8 (ENSMMMG00000004890)	COPS4 (ENSMMMG00000004910)	LIN54 (ENSMMMG00000004923)	ENSMMMG00000005135	SEC31A (ENSMMMG00000005146)	SCD5 (ENSMMMG00000005264)	ENSMMMG00000005454	TMEM150C (ENSMMMG00000005472)	ENSMMMG00000005483	HNRNPDL (ENSMMMG00000005515)	HNRNPD (ENSMMMG00000005546)	ENSMMMG00000005621	RASGEF1B (ENSMMMG00000005646)	PRKG2 (ENSMMMG00000005810)
Eurasian red squirrel	MODERN SPECIES	18	AFF1 (ENSSVLG00005015438)	C4orf36 (ENSSVLG00005015848)	SLC10A6 (ENSSVLG00005015893)	PTPN13 (ENSSVLG00005016102)	MAPK10 (ENSSVLG00005018125)	ARHGAP24 (ENSSVLG00005018879)	WDFY3 (ENSSVLG00005019113)	CDS1 (ENSSVLG00005019388)	NKX6-1 (ENSSVLG00005019440)	ENSSVLG00005019498	GPAT3 (ENSSVLG00005019557)	ABRAXAS1 (ENSSVLG00005019610)	ENSSVLG00005019766	HELQ (ENSSVLG00005019975)	ENSSVLG00005020214	HPSE (ENSSVLG00005020319) ##22	COQ2 (ENSSVLG00005020613)	ENSSVLG00005020728	PLAC8 (ENSSVLG00005020747)	COPS4 (ENSSVLG00005020796)	LIN54 (ENSSVLG00005020883)	THAP9 (ENSSVLG00005021207)	ENSSVLG00005021269	SEC31A (ENSSVLG00005021390)	SCD5 (ENSSVLG00005021839)	ENSSVLG00005021877	TMEM150C (ENSSVLG00005021907)	ENOPH1 (ENSSVLG00005022006)	HNRNPDL (ENSSVLG00005022171)	HNRNPD (ENSSVLG00005022330)	RASGEF1B (ENSSVLG00005022447)
Lagomorpha	ANCESTRAL SPECIES	42																ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Rabbit	MODERN SPECIES	6	ENSOCUG00000034961	NKX6-1 (ENSOCUG00000028183)	CDS1 (ENSOCUG00000017147)	WDFY3 (ENSOCUG00000017155)	ENSOCUG00000025897	ARHGAP24 (ENSOCUG00000010654)	MAPK10 (ENSOCUG00000010663)	ENSOCUG00000038885	ENSOCUG00000035426	PTPN13 (ENSOCUG00000012421)	SLC10A6 (ENSOCUG00000014905)	C4orf36 (ENSOCUG00000014900)	ENSOCUG00000024043	AFF1 (ENSOCUG00000002105)	KLHL8 (ENSOCUG00000002115)	HPSE (ENSOCUG00000011126) ##22	COQ2 (ENSOCUG00000011119)	PLAC8 (ENSOCUG00000029190)	COPS4 (ENSOCUG00000003409)	LIN54 (ENSOCUG00000012516)	THAP9 (ENSOCUG00000000333)	SEC31A (ENSOCUG00000014918)	SCD5 (ENSOCUG00000005937)	ENSOCUG00000038720	TMEM150C (ENSOCUG00000021965)	ENOPH1 (ENSOCUG00000013812)	HNRNPDL (ENSOCUG00000013805)	HNRNPD (ENSOCUG00000001357)	RASGEF1B (ENSOCUG00000010456)	PRKG2 (ENSOCUG00000008464)	BMP3 (ENSOCUG00000000658)
Pika	MODERN SPECIES	3482																ENSOPRG00000002599 ##22	ENSOPRG00000002570
Tree shrew	MODERN SPECIES	3907												GPAT3 (ENSTBEG00000012571)	ABRAXAS1 (ENSTBEG00000012555)	MRPS18C (ENSTBEG00000012505)	HELQ (ENSTBEG00000012411)	HPSE (ENSTBEG00000012295) ##22
Atlantogenata	ANCESTRAL SPECIES	25	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Xenarthra	ANCESTRAL SPECIES	91			ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000165276	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2968	MAPK10 (ENSDNOG00000002388)	ARHGAP24 (ENSDNOG00000031230)	ENSDNOG00000038463	ENSDNOG00000046902	ENSDNOG00000044539	ENSDNOG00000003411	ENSDNOG00000044912	ENSDNOG00000031734	CDS1 (ENSDNOG00000035416)	NKX6-1 (ENSDNOG00000014879)	ENSDNOG00000035699	GPAT3 (ENSDNOG00000008716)	ABRAXAS1 (ENSDNOG00000018328)	ENSDNOG00000043482	ENSDNOG00000045279	ENSDNOG00000042765 ##22	ENSDNOG00000036915 ##22	COQ2 (ENSDNOG00000015413)	ENSDNOG00000030967	ENSDNOG00000045388	PLAC8 (ENSDNOG00000025237)	COPS4 (ENSDNOG00000018797)	LIN54 (ENSDNOG00000016114)	THAP9 (ENSDNOG00000043565)	SEC31A (ENSDNOG00000019658)	SCD5 (ENSDNOG00000047400)	TMEM150C (ENSDNOG00000032697)	ENSDNOG00000037099	ENSDNOG00000003887
Armadillo	MODERN SPECIES	2968	ARHGAP24 (ENSDNOG00000031230)	ENSDNOG00000038463	ENSDNOG00000046902	ENSDNOG00000044539	ENSDNOG00000003411	ENSDNOG00000044912	ENSDNOG00000031734	CDS1 (ENSDNOG00000035416)	NKX6-1 (ENSDNOG00000014879)	ENSDNOG00000035699	GPAT3 (ENSDNOG00000008716)	ABRAXAS1 (ENSDNOG00000018328)	ENSDNOG00000043482	ENSDNOG00000045279	ENSDNOG00000042765 ##22	ENSDNOG00000036915 ##22	COQ2 (ENSDNOG00000015413)	ENSDNOG00000030967	ENSDNOG00000045388	PLAC8 (ENSDNOG00000025237)	COPS4 (ENSDNOG00000018797)	LIN54 (ENSDNOG00000016114)	THAP9 (ENSDNOG00000043565)	SEC31A (ENSDNOG00000019658)	SCD5 (ENSDNOG00000047400)	TMEM150C (ENSDNOG00000032697)	ENSDNOG00000037099	ENSDNOG00000003887
Sloth	MODERN SPECIES	6070																ENSCHOG00000012965 ##22
Afrotheria	ANCESTRAL SPECIES	35	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Tenrec	MODERN SPECIES	6646																HPSE (ENSETEG00000015782) ##22
Afrotheria_a	ANCESTRAL SPECIES	35	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000157329	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914	ENSGT00940000154426.b.b	ENSGT00940000158010	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159775	ENSGT00390000016547
Elephant	MODERN SPECIES	302	ENSLAFG00000015880	ENSLAFG00000027149	C4orf36 (ENSLAFG00000014505)	SLC10A6 (ENSLAFG00000014503)	PTPN13 (ENSLAFG00000014491)	MAPK10 (ENSLAFG00000012079)	ARHGAP24 (ENSLAFG00000012071)	WDFY3 (ENSLAFG00000013162)	CDS1 (ENSLAFG00000013159)	ENSLAFG00000030127	ENSLAFG00000031975	GPAT3 (ENSLAFG00000001064)	ABRAXAS1 (ENSLAFG00000001062)	MRPS18C (ENSLAFG00000001059)	HELQ (ENSLAFG00000001056)	HPSE (ENSLAFG00000000288) ##22	COQ2 (ENSLAFG00000001174)	PLAC8 (ENSLAFG00000010674)	COPS4 (ENSLAFG00000003147)	LIN54 (ENSLAFG00000006640)	THAP9 (ENSLAFG00000016726)	SEC31A (ENSLAFG00000016710)	SCD5 (ENSLAFG00000016552)	TMEM150C (ENSLAFG00000027862)	ENOPH1 (ENSLAFG00000008619)	HNRNPDL (ENSLAFG00000008612)	HNRNPD (ENSLAFG00000016483)	ENSLAFG00000000887	ENSLAFG00000030625	RASGEF1B (ENSLAFG00000005606)	PRKG2 (ENSLAFG00000007763)
Hyrax	MODERN SPECIES	5627																HPSE (ENSPCAG00000016168) ##22
Anura	ANCESTRAL SPECIES	196		ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000153771.B	ENSGT00940000153510.b
Frog	MODERN SPECIES		naaa (ENSXETG00000027610)	ppef2 (ENSXETG00000031849)	nup54 (ENSXETG00000024117)	scarb2 (ENSXETG00000024116)	ENSXETG00000042400	ENSXETG00000046289	fam47e (ENSXETG00000032851)	slc10a6 (ENSXETG00000012551)	ptpn13 (ENSXETG00000012558)	ENSXETG00000044758	rasgef1b (ENSXETG00000012564)	hnrnpd (ENSXETG00000012569)	hnrnpdl (ENSXETG00000023026)	enoph1 (ENSXETG00000012582)	tmem150c (ENSXETG00000032862)	hpse (ENSXETG00000017928) ##22	ENSXETG00000043422	hsd17b11 (ENSXETG00000017934)	ugt2a1 (ENSXETG00000017935)	ythdc1 (ENSXETG00000017960)	tmprss11f (ENSXETG00000017962)	ENSXETG00000017966	ENSXETG00000048430	coq2 (ENSXETG00000017968)	uba6 (ENSXETG00000017969)	ENSXETG00000044180	stap1 (ENSXETG00000017973)	cenpc (ENSXETG00000031099)	ENSXETG00000046817	ENSXETG00000046402	epha5 (ENSXETG00000034200)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000004527	ENSLLEG00000004531	ENSLLEG00000004536	ENSLLEG00000004542	ENSLLEG00000004547	TIMM44 (ENSLLEG00000004557)	ENSLLEG00000004569	ENSLLEG00000004594	ENSLLEG00000004625	ENSLLEG00000004627	GPAT3 (ENSLLEG00000004634)	ABRAXAS1 (ENSLLEG00000004654)	ENSLLEG00000004670	ENSLLEG00000004677	HELQ (ENSLLEG00000004695)	HPSE (ENSLLEG00000004732) ##22	ENSLLEG00000004774	COQ2 (ENSLLEG00000004790)	COPS4 (ENSLLEG00000004806)	ENSLLEG00000004826	ENSLLEG00000004862	ENSLLEG00000004899	YTHDC1 (ENSLLEG00000004932)	ENSLLEG00000005045	ENSLLEG00000005090	ENSLLEG00000005213	ENSLLEG00000005245	ENSLLEG00000005266	ENSLLEG00000005342	ENSLLEG00000005369	RFX2 (ENSLLEG00000005486)
Coelacanth	MODERN SPECIES	744										ENSLACG00000012109	GPAT3 (ENSLACG00000012025)	ABRAXAS1 (ENSLACG00000011445)	mrps18c (ENSLACG00000011243)	ENSLACG00000011182	HELQ (ENSLACG00000010835)	HPSE (ENSLACG00000010292) ##22	SH2D4A (ENSLACG00000009572)	CSGALNACT1 (ENSLACG00000008368)	ENSLACG00000003731	ENSLACG00000022507
Actinopterygii	ANCESTRAL SPECIES	213	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000168590	ENSGT00940000155983.a.b	ENSGT00940000165395	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102	ENSGT00390000015494	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023
Neopterygii	ANCESTRAL SPECIES	123	ENSGT00940000156471.a	ENSGT00510000047107.B	ENSGT00390000015494	ENSGT00940000155983.a.b	ENSGT00940000159066	ENSGT00940000156161.B	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000156901.B	ENSGT00510000048748	ENSGT00510000048556
Osteoglossocephalai	ANCESTRAL SPECIES	11	ENSGT00390000015494	ENSGT01100000263544.c.a.a.b	ENSGT00390000009453.gb	ENSGT00940000155983.a.b	ENSGT00940000159066	ENSGT00940000156161.B	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234518.B.a.a	ENSGT00960000187050	ENSGT00940000157400	ENSGT00940000158907	ENSGT00390000004624.a.a	ENSGT00940000153432.B	ENSGT00940000175038	ENSGT00940000155855	ENSGT00500000044987	ENSGT00940000166240	ENSGT00530000063460.A.b
Clupeocephala	ANCESTRAL SPECIES	146	ENSGT01100000263544.c.a.a.b	ENSGT00390000009453.gb	ENSGT00940000155983.a.b	ENSGT00940000168590	ENSGT00940000159066	ENSGT00940000156161.B	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00500000044987	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000002096	ENSGT00940000165259.a
Otomorpha	ANCESTRAL SPECIES	252	ENSGT01100000263544.c.a.a.b	ENSGT00390000009453.gb	ENSGT00940000155983.a.b	ENSGT00940000168590	ENSGT00940000159066	ENSGT00940000156161.B	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240
Clupeiformes	ANCESTRAL SPECIES	55		ENSGT00940000159475.c	ENSGT00940000156161.A	ENSGT00940000159066	ENSGT00940000168590	ENSGT00940000155983.a.b	ENSGT00390000009453.gb	ENSGT01100000263544.c.a.a.b	ENSGT00510000047107.B	ENSGT00940000156471.a	ENSGT00390000005102.id.b	ENSGT00670000098179.d.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000163160.a	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000002096	ENSGT00940000165259.a	ENSGT00970000193642
Atlantic herring	MODERN SPECIES	3	ENSCHAG00000004628	ppp1r3b (ENSCHAG00000004587)	PPTC7 (ENSCHAG00000004528)	ENSCHAG00000001309	dusp4 (ENSCHAG00000000454)	ENSCHAG00000000381	ENSCHAG00000027683	zgc:86764 (ENSCHAG00000027682)	slc26a1 (ENSCHAG00000027681)	rbp4l (ENSCHAG00000027680)	PDE6B (ENSCHAG00000027294)	atp5mea (ENSCHAG00000027080)	hspb9l (ENSCHAG00000027078)	mrps18c (ENSCHAG00000027075)	HELQ (ENSCHAG00000027047)	hpse (ENSCHAG00000027033) ##22	MYL5 (ENSCHAG00000026957)	btc (ENSCHAG00000026947)	amacr (ENSCHAG00000026943)	slc45a2 (ENSCHAG00000026941)	rxfp3 (ENSCHAG00000026939)	ENSCHAG00000026936	ENSCHAG00000026925	rai14 (ENSCHAG00000026917)	fgf10a (ENSCHAG00000026910)	nnt (ENSCHAG00000026492)	ENSCHAG00000026451	ENSCHAG00000026449	ENSCHAG00000026445	ENSCHAG00000026229	ENSCHAG00000026200
Denticle herring	MODERN SPECIES	13	PPTC7 (ENSDCDG00000000182)	ppp1r3b (ENSDCDG00000000196)	ENSDCDG00000000516	dusp4 (ENSDCDG00000001149)	ENSDCDG00000001152	zgc:86764 (ENSDCDG00000001166)	ENSDCDG00000001177	ENSDCDG00000001181	rbp4l (ENSDCDG00000001183)	PDE6B (ENSDCDG00000001354)	atp5mea (ENSDCDG00000002425)	hspb9l (ENSDCDG00000002430)	abraxas1 (ENSDCDG00000002431)	mrps18c (ENSDCDG00000002433)	HELQ (ENSDCDG00000002448)	hpse (ENSDCDG00000002553) ##22	MYL5 (ENSDCDG00000002558)	btc (ENSDCDG00000002561)	amacr (ENSDCDG00000002563)	slc45a2 (ENSDCDG00000002564)	rxfp3 (ENSDCDG00000002566)	ENSDCDG00000002569	rai14 (ENSDCDG00000002573)	fgf10a (ENSDCDG00000002579)	nnt (ENSDCDG00000002607)	ENSDCDG00000002825	ENSDCDG00000002829	ENSDCDG00000002846	ENSDCDG00000003354	ENSDCDG00000003374	cfap53 (ENSDCDG00000003392)
Otophysi	ANCESTRAL SPECIES	37	ENSGT00940000154702.a.b	ENSGT00390000006044	ENSGT00940000167368	ENSGT00730000111140	ENSGT00820000127055.b	ENSGT00940000164254.a.b	ENSGT00950000182926.b.c	ENSGT00940000156208.i.e	ENSGT00940000161685.A.a.d	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066
Characiphysae	ANCESTRAL SPECIES	23	ENSGT00390000003581	ENSGT00390000006044	ENSGT00940000167368	ENSGT00730000111140	ENSGT00820000127055.b	ENSGT00940000164254.a.b	ENSGT00950000182926.b.c	ENSGT00940000156208.i.e	ENSGT00940000161685.A.a.d	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00940000158928.k	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B
Characiphysae_b	ANCESTRAL SPECIES	21	ENSGT00390000003581	ENSGT00390000006044	ENSGT00940000167368	ENSGT00730000111140	ENSGT00820000127055.b	ENSGT00940000164254.a.b	ENSGT00950000182926.b.c	ENSGT00940000156208.i.e	ENSGT00940000161685.A.a.d	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00940000158928.k	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B
Characoidei	ANCESTRAL SPECIES	31	ENSGT00390000003581	ENSGT00390000006044	ENSGT00940000167368	ENSGT00730000111140	ENSGT00820000127055.b	ENSGT00940000164254.a.b	ENSGT00950000182926.b.c	ENSGT00940000156208.i.e	ENSGT00940000161685.A.a.d	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00940000158928.k	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B
Red-bellied piranha	MODERN SPECIES	7	exd1 (ENSPNAG00000008931)	smpd4 (ENSPNAG00000009011)	si:ch211-222n4.2 (ENSPNAG00000009045)	med15 (ENSPNAG00000001282)	crkl (ENSPNAG00000001291)	ENSPNAG00000009104	pgam2 (ENSPNAG00000009116)	NEFL (ENSPNAG00000009120)	nefma (ENSPNAG00000009165)	rpl17 (ENSPNAG00000009219)	nkx6.1 (ENSPNAG00000009232)	gpat3 (ENSPNAG00000009267)	abraxas1 (ENSPNAG00000009295)	mrps18c (ENSPNAG00000009350)	HELQ (ENSPNAG00000009397)	hpse (ENSPNAG00000009474) ##22	MYL5 (ENSPNAG00000009502)	btc (ENSPNAG00000009530)	amacr (ENSPNAG00000009549)	slc45a2 (ENSPNAG00000009592)	rxfp3 (ENSPNAG00000005660)	GZMK (ENSPNAG00000009628)	rai14 (ENSPNAG00000009793)	fgf10a (ENSPNAG00000001336)	nnt (ENSPNAG00000009858)	ENSPNAG00000009880	ENSPNAG00000009913	MFHAS1 (ENSPNAG00000005011)	eri1 (ENSPNAG00000009938)	ppp1r3b (ENSPNAG00000009952)	ENSPNAG00000009965
Mexicana tetra	MODERN SPECIES	66	si:ch211-222n4.2 (ENSAMXG00000031218)	med15 (ENSAMXG00000040274)	ENSAMXG00000037233	crkl (ENSAMXG00000041556)	neflb (ENSAMXG00000001050)	ENSAMXG00000001033	pgam2 (ENSAMXG00000030317)	nefma (ENSAMXG00000040032)	rpl17 (ENSAMXG00000001082)	nkx6.1 (ENSAMXG00000001095)	gpat3 (ENSAMXG00000012191)	abraxas1 (ENSAMXG00000038713)	ENSAMXG00000029786	mrps18c (ENSAMXG00000012238)	HELQ (ENSAMXG00000012252)	hpse (ENSAMXG00000032004) ##22	MYL5 (ENSAMXG00000034506)	btc (ENSAMXG00000037033)	amacr (ENSAMXG00000029907)	slc45a2 (ENSAMXG00000011270)	rxfp3 (ENSAMXG00000025441)	ENSAMXG00000034072	rai14 (ENSAMXG00000011402)	fgf10a (ENSAMXG00000043492)	nnt (ENSAMXG00000016857)	ENSAMXG00000016825	MFHAS1 (ENSAMXG00000016760)	ENSAMXG00000016781	ENSAMXG00000034320	eri1 (ENSAMXG00000029498)	ppp1r3b (ENSAMXG00000025154)
Electric eel	MODERN SPECIES	34	TMEM132C (ENSEEEG00000014738)	ENSEEEG00000014736	smpd4 (ENSEEEG00000014671)	med15 (ENSEEEG00000014633)	crkl (ENSEEEG00000014627)	ENSEEEG00000014615	pgam2 (ENSEEEG00000014613)	neflb (ENSEEEG00000014611)	nefma (ENSEEEG00000014609)	rpl17 (ENSEEEG00000014601)	nkx6.1 (ENSEEEG00000014599)	gpat3 (ENSEEEG00000014590)	abraxas1 (ENSEEEG00000014584)	mrps18c (ENSEEEG00000014582)	HELQ (ENSEEEG00000014526)	hpse (ENSEEEG00000014517) ##22	MYL5 (ENSEEEG00000014516)	btc (ENSEEEG00000014515)	amacr (ENSEEEG00000014511)	slc45a2 (ENSEEEG00000014510)	rxfp3 (ENSEEEG00000014508)	ENSEEEG00000014507	rai14 (ENSEEEG00000014500)	fgf10a (ENSEEEG00000014495)	nnt (ENSEEEG00000013559)	ENSEEEG00000013528	ENSEEEG00000013525
Channel catfish	MODERN SPECIES	9	RIMBP2 (ENSIPUG00000003435)	odf2 (ENSIPUG00000003472)	cp080 (ENSIPUG00000003491)	med15 (ENSIPUG00000003511)	crkl (ENSIPUG00000003533)	ENSIPUG00000003546	pgam2 (ENSIPUG00000003558)	neflb (ENSIPUG00000003563)	nefm (ENSIPUG00000003572)	rpl17 (ENSIPUG00000003599)	nkx6.1 (ENSIPUG00000003661)	agpat9 (ENSIPUG00000003715)	fam175a (ENSIPUG00000003772)	mrps18c (ENSIPUG00000003783)	helq (ENSIPUG00000003800)	hpse (ENSIPUG00000003847) ##22	myl5 (ENSIPUG00000003872)	btc (ENSIPUG00000003972)	AMACR (ENSIPUG00000003980)	slc45a2 (ENSIPUG00000003993)	rxfp3 (ENSIPUG00000004003)	gzmk (ENSIPUG00000004016)	rai14 (ENSIPUG00000004046)	fgf10a (ENSIPUG00000004119)	nnt (ENSIPUG00000004138)	ENSIPUG00000004189	fyb (ENSIPUG00000004212)	mfhas1 (ENSIPUG00000004290)	eri1 (ENSIPUG00000004305)	ppp1r3b (ENSIPUG00000004331)	ENSIPUG00000004366
Cyprinoidei	ANCESTRAL SPECIES	54	ENSGT00940000166762	ENSGT00940000154702.a.b	ENSGT00390000006044	ENSGT00940000167368	ENSGT00730000111140	ENSGT00820000127055.b	ENSGT00950000182926.b.c	ENSGT00940000156208.i.e	ENSGT00940000161685.A.a.d	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000163160.a	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475.c	ENSGT00940000156161.B	ENSGT00940000159066	ENSGT00940000155983.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	85	ENSGT00940000166762.c	ENSGT00940000154702.a.b.a	ENSGT00390000006044.l	ENSGT00730000111140	ENSGT00820000127055.b.d	ENSGT00950000182926.b.c.l	ENSGT00940000156208.i.e.b	ENSGT00940000161685.A.a.d.a	ENSGT00950000183010.a.a.b.e	ENSGT00940000160897.g	ENSGT01030000234574.B.c.b.a.a.a.b	ENSGT00530000063424.b.x	ENSGT00940000165965.a.a	ENSGT00940000157350.o	ENSGT00940000165965.b	ENSGT00390000004874.a.b.c ##22	ENSGT00940000160508.b	ENSGT00940000157215.d	ENSGT00950000182914.a.b.f	ENSGT01030000234534.B.a.a.a.b.d	ENSGT00940000163160.a.d.a	ENSGT00940000157400.c	ENSGT00940000158907.c.a	ENSGT00390000004624.a.a.d	ENSGT00940000166240	ENSGT00530000063460.A.b.f.a.a	ENSGT00940000158928.j	ENSGT00530000063205.B.o	ENSGT00940000159475.c.b	ENSGT00940000156161.B.p.b	ENSGT00940000159066.d
Goldfish	MODERN SPECIES	13	stx2a (ENSCARG00000010257)	RIMBP2 (ENSCARG00000010157)	ENSCARG00000010135	TMEM132C (ENSCARG00000010129)	smpd4 (ENSCARG00000008444)	crkl (ENSCARG00000008369)	pgam2 (ENSCARG00000008359)	NEFL (ENSCARG00000008349)	nefma (ENSCARG00000008332)	rpl17 (ENSCARG00000008315)	nkx6.1 (ENSCARG00000008308)	gpat3 (ENSCARG00000007805)	abraxas1 (ENSCARG00000007783)	mrps18c (ENSCARG00000007773)	HELQ (ENSCARG00000007636)	hpse (ENSCARG00000007573) ##22	ENSCARG00000007546	ENSCARG00000007539	atp5mea (ENSCARG00000007526)	PDE6B (ENSCARG00000007078)	rbp4l (ENSCARG00000007026)	slc26a1 (ENSCARG00000007013)	zgc:86764 (ENSCARG00000006976)	ENSCARG00000006960	dusp4 (ENSCARG00000006954)	ENSCARG00000004173	amacr (ENSCARG00000003855)	slc45a2 (ENSCARG00000003839)	rxfp3 (ENSCARG00000003828)	ENSCARG00000003809	rai14 (ENSCARG00000025720)
Cyprininae_a	ANCESTRAL SPECIES	44	ENSGT00940000166762.c	ENSGT00940000154702.a.b.a	ENSGT00390000006044.l	ENSGT00730000111140.ec	ENSGT00820000127055.b.d	ENSGT00950000182926.b.c.l	ENSGT00940000165501.d	ENSGT00940000161685.A.a.d.a	ENSGT00950000183010.a.a.b.e	ENSGT00940000160897.g	ENSGT01030000234574.B.c.b.a.a.a.b	ENSGT00530000063424.b.x	ENSGT00940000165965.a.a	ENSGT00940000157350.o	ENSGT00940000165965.b	ENSGT00390000004874.a.b.c ##22	ENSGT00940000160508.b	ENSGT00940000157215.d.a	ENSGT00940000163160.a.d.a	ENSGT00940000157400.c	ENSGT00940000158907.c.a	ENSGT00390000004624.a.a.d	ENSGT00940000166240	ENSGT00530000063460.A.b.f.a.a	ENSGT00940000158928.j	ENSGT00530000063205.B.o	ENSGT00940000159475.c.b	ENSGT00940000156161.B.p.b	ENSGT00940000159066.d	ENSGT00940000155983.a.b.a	ENSGT00390000009453.gb.a
Golden-line barbel	MODERN SPECIES	113				smpd4 (ENSSGRG00000044217)	med15 (ENSSGRG00000044299)	crkl (ENSSGRG00000044353)	pgam2 (ENSSGRG00000044355)	pgam2 (ENSSGRG00000044357)	ENSSGRG00000044359	nefma (ENSSGRG00000044361)	nkx6.1 (ENSSGRG00000044364)	gpat3 (ENSSGRG00000044379)	HELQ (ENSSGRG00000044678)	mrps18c (ENSSGRG00000044732)	ENSSGRG00000044733	hpse (ENSSGRG00000044734) ##22	amacr (ENSSGRG00000044736)	slc45a2 (ENSSGRG00000044738)	rxfp3 (ENSSGRG00000044740)	ENSSGRG00000044741	rai14 (ENSSGRG00000044750)	fgf10a (ENSSGRG00000044846)	nnt (ENSSGRG00000044890)	ENSSGRG00000046182	ENSSGRG00000046184	ENSSGRG00000046185	MFHAS1 (ENSSGRG00000046187)	ENSSGRG00000046188	eri1 (ENSSGRG00000046189)	ppp1r3b (ENSSGRG00000046190)	ENSSGRG00000046201
Common carp reference	MODERN SPECIES	45	ENSCCRG00000023977	ENSCCRG00000062413	smpd4 (ENSCCRG00000030618)	med15 (ENSCCRG00000069677)	ENSCCRG00000072989	ENSCCRG00000045323	ENSCCRG00000045333	pgam2 (ENSCCRG00000076384)	nefma (ENSCCRG00000053665)	rpl17 (ENSCCRG00000025631)	nkx6.1 (ENSCCRG00000077610)	gpat3 (ENSCCRG00000049286)	abraxas1 (ENSCCRG00000022204)	mrps18c (ENSCCRG00000049341)	HELQ (ENSCCRG00000049351)	hpse (ENSCCRG00000018956) ##22	btc (ENSCCRG00000070380)	amacr (ENSCCRG00000021193)	ENSCCRG00000021186	rai14 (ENSCCRG00000020713)	fgf10a (ENSCCRG00000020695)	nnt (ENSCCRG00000057395)	ENSCCRG00000019874	ENSCCRG00000061180	ENSCCRG00000075254	eri1 (ENSCCRG00000075963)	ppp1r3b (ENSCCRG00000052865)	ENSCCRG00000016283	dusp4 (ENSCCRG00000072716)	ENSCCRG00000065734	zgc:86764 (ENSCCRG00000057589)
Cyprininae	ANCESTRAL SPECIES	144												ENSGT01030000234574.B.c.b.a.a.a.a	ENSGT00530000063424.b.w	ENSGT00940000165965.a.b	ENSGT00940000157350.p	ENSGT00390000004874.a.b.d ##22	ENSGT00940000160508.a	ENSGT00940000157215.c	ENSGT00950000182914.a.b.e	ENSGT01030000234534.B.a.a.a.b.c	ENSGT00940000157400.d	ENSGT00940000158907.c.b	ENSGT00390000004624.a.a.c	ENSGT00940000173711	ENSGT00530000063460.A.b.f.a.b	ENSGT00940000158928.i	ENSGT00530000063205.B.p	ENSGT00940000159475.c.a	ENSGT00940000156161.B.p.a	ENSGT00940000159066.c	ENSGT00940000155983.a.b.b
Goldfish	MODERN SPECIES	40	tlcd1 (ENSCARG00000023822)	nipal4 (ENSCARG00000023829)	nkx6.1 (ENSCARG00000023839)	rpl17 (ENSCARG00000023847)	nefma (ENSCARG00000023855)	NEFL (ENSCARG00000023860)	pgam2 (ENSCARG00000023868)	crkl (ENSCARG00000023888)	med15 (ENSCARG00000023896)	smpd4 (ENSCARG00000024004)	ENSCARG00000025638	ENSCARG00000025650	gpat3 (ENSCARG00000025669)	abraxas1 (ENSCARG00000025778)	mrps18c (ENSCARG00000025796)	hpse (ENSCARG00000025811) ##22	btc (ENSCARG00000025870)	amacr (ENSCARG00000025874)	slc45a2 (ENSCARG00000025889)	rxfp3 (ENSCARG00000025900)	rai14 (ENSCARG00000025949)	fgf10a (ENSCARG00000026221)	nnt (ENSCARG00000026304)	ENSCARG00000029809	MFHAS1 (ENSCARG00000029835)	eri1 (ENSCARG00000029849)	ppp1r3b (ENSCARG00000029864)	ENSCARG00000029889	dusp4 (ENSCARG00000030254)	ENSCARG00000030263	zgc:86764 (ENSCARG00000030273)
Cyprininae_a	ANCESTRAL SPECIES	89	ENSGT00940000166762.d	ENSGT00940000154702.a.b.b	ENSGT00390000006044.k	ENSGT00940000167368	ENSGT00730000111140.dc	ENSGT00820000127055.b.c	ENSGT00950000182926.b.c.k	ENSGT00940000156208.i.e.a	ENSGT00940000161685.A.a.d.b	ENSGT00950000183010.a.a.b.f	ENSGT00940000160897.h	ENSGT01030000234574.B.c.b.a.a.a.a	ENSGT00530000063424.b.w	ENSGT00940000165965.a.b	ENSGT00940000157350.p	ENSGT00390000004874.a.b.d ##22	ENSGT00940000160508.a	ENSGT00940000157215.c	ENSGT00950000182914.a.b.e	ENSGT01030000234534.B.a.a.a.b.d	ENSGT00940000157400.d	ENSGT00940000158907.c.b	ENSGT00390000004624.a.a.c	ENSGT00940000173711	ENSGT00530000063460.A.b.f.a.b	ENSGT00940000158928.i	ENSGT00530000063205.B.p	ENSGT00940000159475.c.a	ENSGT00940000156161.B.p.a	ENSGT00940000159066.c	ENSGT00940000155983.a.b.b
Golden-line barbel	MODERN SPECIES	144			ENSSGRG00000028922	ENSSGRG00000028921	smpd4 (ENSSGRG00000028920)	si:ch211-222n4.2 (ENSSGRG00000028919)	med15 (ENSSGRG00000028845)	crkl (ENSSGRG00000028843)	pgam2 (ENSSGRG00000028839)	NEFL (ENSSGRG00000028838)	nefma (ENSSGRG00000028836)	nkx6.1 (ENSSGRG00000028833)	gpat3 (ENSSGRG00000028732)	abraxas1 (ENSSGRG00000028729)	HELQ (ENSSGRG00000028671)	hpse (ENSSGRG00000028724) ##22	btc (ENSSGRG00000028668)	ENSSGRG00000028667	slc45a2 (ENSSGRG00000028666)	rai14 (ENSSGRG00000028657)	fgf10a (ENSSGRG00000028653)	nnt (ENSSGRG00000027964)	ENSSGRG00000027956	ENSSGRG00000027950	eri1 (ENSSGRG00000027945)	ppp1r3b (ENSSGRG00000027943)	ENSSGRG00000027766	dusp4 (ENSSGRG00000027757)	ENSSGRG00000027756	zgc:86764 (ENSSGRG00000027718)	rbp4l (ENSSGRG00000027713)
Common carp reference	MODERN SPECIES	38	ENSCCRG00000058288	ENSCCRG00000064563	smpd4 (ENSCCRG00000048346)	med15 (ENSCCRG00000081800)	crkl (ENSCCRG00000034747)	ENSCCRG00000034745	ENSCCRG00000055031	nefma (ENSCCRG00000055322)	ENSCCRG00000009887	ENSCCRG00000069417	nkx6.1 (ENSCCRG00000009898)	gpat3 (ENSCCRG00000029084)	abraxas1 (ENSCCRG00000074286)	mrps18c (ENSCCRG00000056607)	HELQ (ENSCCRG00000022228)	hpse (ENSCCRG00000049378) ##22	btc (ENSCCRG00000072417)	amacr (ENSCCRG00000073501)	slc45a2 (ENSCCRG00000024947)	rai14 (ENSCCRG00000041158)	fgf10a (ENSCCRG00000041138)	nnt (ENSCCRG00000077664)	ENSCCRG00000019866	ENSCCRG00000070694	eri1 (ENSCCRG00000019826)	ppp1r3b (ENSCCRG00000056231)	ENSCCRG00000059873	ENSCCRG00000076650	ENSCCRG00000058844	dusp4 (ENSCCRG00000066705)	ENSCCRG00000016791
Zebrafish	MODERN SPECIES	13	smpd4 (ENSDARG00000020730)	si:ch211-222n4.2 (ENSDARG00000093026)	med15 (ENSDARG00000014292)	crkl (ENSDARG00000028699)	ENSDARG00000058477	MPP4 (ENSDARG00000009386)	rpl17 (ENSDARG00000057556)	pgam2 (ENSDARG00000057571)	ENSDARG00000057568	nefma (ENSDARG00000021351)	nkx6.1 (ENSDARG00000022569)	gpat3 (ENSDARG00000016048)	abraxas1 (ENSDARG00000043339)	mrps18c (ENSDARG00000069624)	helq (ENSDARG00000079818)	hpse (ENSDARG00000063634) ##22	btc (ENSDARG00000098112)	amacr (ENSDARG00000057435)	slc45a2 (ENSDARG00000002593)	rxfp3 (ENSDARG00000057410)	ENSDARG00000028780	ENSDARG00000090380	rai14 (ENSDARG00000039974)	fgf10a (ENSDARG00000030932)	nnt (ENSDARG00000023536)	ENSDARG00000044695	ENSDARG00000044694	MFHAS1 (ENSDARG00000079104)	eri1 (ENSDARG00000044692)	ppp1r3b (ENSDARG00000044691)	ENSDARG00000077650
Euteleosteomorpha	ANCESTRAL SPECIES	32	ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00510000048500	ENSGT00940000156466	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00940000173711	ENSGT00530000063460.A.b	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c
Acanthomorphata	ANCESTRAL SPECIES	15			ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Cod	MODERN SPECIES	17	ENSGMOG00000006021	ENSGMOG00000001667	ENSGMOG00000029289	myo5b (ENSGMOG00000019264)	ENSGMOG00000035554	ENSGMOG00000019290	lmbrd2b (ENSGMOG00000012999)	ENSGMOG00000025798	ENSGMOG00000012984	nkx6.1 (ENSGMOG00000029517)	gpat3 (ENSGMOG00000031783)	ENSGMOG00000035135	ENSGMOG00000000023	mrps18c (ENSGMOG00000032590)	HELQ (ENSGMOG00000000020)	hpse (ENSGMOG00000000018) ##22	ENSGMOG00000012980	ENSGMOG00000000016	dmtn (ENSGMOG00000025083)	pbdc1 (ENSGMOG00000019503)	xpo7 (ENSGMOG00000019505)	ENSGMOG00000008712	dusp11 (ENSGMOG00000028702)	ENSGMOG00000034173	tcf7l1a (ENSGMOG00000006333)	dbnla (ENSGMOG00000027970)	ENSGMOG00000030473	npy8ar (ENSGMOG00000017513)	ENSGMOG00000017491	ENSGMOG00000028456	kctd9b (ENSGMOG00000014201)
Euacanthomorphacea	ANCESTRAL SPECIES	12			ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Pinecone sodierfish	MODERN SPECIES	3	derl2 (ENSMMDG00005024749)	ENSMMDG00005024748	ENSMMDG00005024747	cfap53 (ENSMMDG00005024746)	myo5b (ENSMMDG00005023295)	ENSMMDG00005023113	capslb (ENSMMDG00005023108)	lmbrd2b (ENSMMDG00005023002)	ENSMMDG00005022986	rpl17 (ENSMMDG00005022980)	nkx6.1 (ENSMMDG00005022979)	gpat3 (ENSMMDG00005022976)	abraxas1 (ENSMMDG00005022974)	mrps18c (ENSMMDG00005022973)	HELQ (ENSMMDG00005022960)	hpse (ENSMMDG00005022951) ##22	MYL5 (ENSMMDG00005022949)	ppp3ccb (ENSMMDG00005021889)	dmtn (ENSMMDG00005021847)	pbdc1 (ENSMMDG00005021844)	xpo7 (ENSMMDG00005021048)	GFRA2 (ENSMMDG00005021022)	ENSMMDG00005021018	ENSMMDG00005021017	ATP6V1B2 (ENSMMDG00005020967)	dusp11 (ENSMMDG00005020958)	ENSMMDG00005020957	tcf7l1a (ENSMMDG00005020954)	ENSMMDG00005020953	COX5B (ENSMMDG00005020951)	npy8ar (ENSMMDG00005020758)
Percomorphaceae	ANCESTRAL SPECIES	54			ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000156729	ENSGT00390000002634.a.f.b.a.a.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000156729	ENSGT00390000002634.a.f.b.a.a.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00530000066485	ENSGT00500000044904.a.b.e.a.k.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Cichlidae	ANCESTRAL SPECIES	75	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00500000044904.a.b.e.a.k.a.a.b.b.a	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000156466	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00500000044904.a.b.e.a.k.a.a.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000157038.a.b.v	ENSGT00940000164699.r	ENSGT00940000164699.q	ENSGT00940000155847.c	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.f	ENSGT00390000011010.a.a.e	ENSGT00940000164226.a.b	ENSGT00940000155782
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00500000044904.a.b.e.a.k.a.a.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000157038.a.b.v	ENSGT00940000164699.r	ENSGT00940000164699.q.b	ENSGT00940000155847.c	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.f	ENSGT00390000011010.a.a.e	ENSGT00940000164226.a.b	ENSGT00940000155782
Haplochromini	ANCESTRAL SPECIES		ENSGT00500000044904.a.b.e.a.k.a.a.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00500000044904.a.b.e.a.k.a.a.a.a.a	ENSGT00940000163299.B.b.b.h.c.b.s.a.b	ENSGT00940000155987.b	ENSGT00940000163299.B.b.b.h.c.b.t.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000157038.a.b.v	ENSGT00940000164699.r	ENSGT00940000164699.q.b	ENSGT00940000155847.c	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.f	ENSGT00390000011010.a.a.e	ENSGT00940000164226.a.b	ENSGT00940000155782
Burton s mouthbrooder	MODERN SPECIES	706						ENSHBUG00000002104	ENSHBUG00000002092	MFHAS1 (ENSHBUG00000002081)	rpl17 (ENSHBUG00000002066)	ENSHBUG00000002042	nkx6.1 (ENSHBUG00000002037)	gpat3 (ENSHBUG00000002032)	abraxas1 (ENSHBUG00000002018)	mrps18c (ENSHBUG00000002008)	HELQ (ENSHBUG00000001997)	hpse (ENSHBUG00000001958) ##22	ppp3ccb (ENSHBUG00000001946)	dmtn (ENSHBUG00000001936)	pbdc1 (ENSHBUG00000001927)	xpo7 (ENSHBUG00000001912)
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000162139	ENSGT00500000044904.a.b.e.a.k.b.b.a.a.a.b	ENSGT00500000044904.a.b.e.a.k.a.a.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000155987.b	ENSGT00940000163299.B.b.b.h.c.b.t.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.b	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.a	ENSGT00940000155068.a.a	ENSGT00940000157038.a.b.v	ENSGT00940000164699.r	ENSGT00940000164699.q.b	ENSGT00940000155847.c	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.f	ENSGT00390000011010.a.a.e	ENSGT00940000164226.a.b
P. nyererei	MODERN SPECIES	516	ENSPNYG00000011023	ENSPNYG00000010978	ENSPNYG00000010958	ENSPNYG00000010929	lmbrd2b (ENSPNYG00000010898)	ppp1r3b (ENSPNYG00000010876)	ENSPNYG00000010872	ENSPNYG00000010827	MFHAS1 (ENSPNYG00000010802)	rpl17 (ENSPNYG00000010723)	nkx6.1 (ENSPNYG00000010705)	gpat3 (ENSPNYG00000010667)	abraxas1 (ENSPNYG00000010639)	mrps18c (ENSPNYG00000010654)	HELQ (ENSPNYG00000010575)	hpse (ENSPNYG00000010531) ##22	ppp3ccb (ENSPNYG00000010466)	dmtn (ENSPNYG00000010425)
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000159475.c	ENSGT00500000044904.a.b.e.a.k.a.a.a.a.a	ENSGT00940000163299.B.b.b.h.c.b.s.a.b	ENSGT00940000163299.B.b.b.h.c.b.t.a	ENSGT01000000214408.a.b.a.a.a.c.a.b.e.a.a.b	ENSGT00940000155987.b.h.a	ENSGT00940000163299.B.b.b.h.c.b.t.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.b	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.a.b.a	ENSGT00940000155068.a.a	ENSGT00940000157038.a.b.v
Eastern happy	MODERN SPECIES	19	ENSACLG00000009333	ENSACLG00000009340	ENSACLG00000009348	ENSACLG00000009552	ENSACLG00000009555	ENSACLG00000009558	ENSACLG00000009571	MFHAS1 (ENSACLG00000009577)	rpl17 (ENSACLG00000009583)	nkx6.1 (ENSACLG00000009617)	ENSACLG00000009622	gpat3 (ENSACLG00000010444)	abraxas1 (ENSACLG00000010501)	mrps18c (ENSACLG00000010521)	HELQ (ENSACLG00000010558)	hpse (ENSACLG00000010619) ##22	ppp3ccb (ENSACLG00000010653)	dmtn (ENSACLG00000010704)	pbdc1 (ENSACLG00000010774)	xpo7 (ENSACLG00000010791)	GFRA2 (ENSACLG00000010980)	ENSACLG00000011135	ENSACLG00000011142	ENSACLG00000011433	ATP6V1B2 (ENSACLG00000011445)	TCF7L1 (ENSACLG00000011476)	ENSACLG00000012273	ENSACLG00000012298	dusp6 (ENSACLG00000012334)	poc1b (ENSACLG00000012360)	cep41 (ENSACLG00000012383)
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005023315	lmbrd2b (ENSMZEG00005023312)	ppp1r3b (ENSMZEG00005023310)	ENSMZEG00005023309	ENSMZEG00005023307	ENSMZEG00005023305	ENSMZEG00005023303	ENSMZEG00005023298	ENSMZEG00005023296	MFHAS1 (ENSMZEG00005023295)	rpl17 (ENSMZEG00005023287)	nkx6.1 (ENSMZEG00005023285)	gpat3 (ENSMZEG00005023281)	mrps18c (ENSMZEG00005023278)	HELQ (ENSMZEG00005023270)	hpse (ENSMZEG00005023262) ##22	ppp3ccb (ENSMZEG00005023257)	dmtn (ENSMZEG00005023252)	pbdc1 (ENSMZEG00005023249)	xpo7 (ENSMZEG00005023246)	GFRA2 (ENSMZEG00005023241)	ENSMZEG00005023235	ATP6V1B2 (ENSMZEG00005023232)	kcne4 (ENSMZEG00005023231)	fezf1 (ENSMZEG00005023230)	CADPS2 (ENSMZEG00005023215)	ENSMZEG00005023209	gal (ENSMZEG00005023208)	prpf4 (ENSMZEG00005023205)	cdc26 (ENSMZEG00005023203)	FER (ENSMZEG00005023198)
Lyretail cichlid	MODERN SPECIES	293	ENSNBRG00000005816	ENSNBRG00000005828	lmbrd2b (ENSNBRG00000005856)	ppp1r3b (ENSNBRG00000005909)	ENSNBRG00000005917	ENSNBRG00000005930	ENSNBRG00000005956	ENSNBRG00000005974	ENSNBRG00000006002	MFHAS1 (ENSNBRG00000006014)	rpl17 (ENSNBRG00000006026)	nkx6.1 (ENSNBRG00000006083)	gpat3 (ENSNBRG00000006106)	abraxas1 (ENSNBRG00000006147)	mrps18c (ENSNBRG00000006182)	hpse (ENSNBRG00000006197) ##22	ppp3ccb (ENSNBRG00000006251)	dmtn (ENSNBRG00000006310)	pbdc1 (ENSNBRG00000006350)	xpo7 (ENSNBRG00000006360)	ENSNBRG00000006452	GFRA2 (ENSNBRG00000006485)	ENSNBRG00000006571	ATP6V1B2 (ENSNBRG00000006606)	TCF7L1 (ENSNBRG00000006638)	ENSNBRG00000006647	ENSNBRG00000006667	ENSNBRG00000006679	COX5B (ENSNBRG00000006699)	ENSNBRG00000006713	npy8ar (ENSNBRG00000006748)
Nile tilapia	MODERN SPECIES	19	ENSONIG00000012503	ENSONIG00000039751	ENSONIG00000041068	ENSONIG00000012500	ENSONIG00000038656	ENSONIG00000035780	ENSONIG00000027867	ENSONIG00000030099	ENSONIG00000036777	MFHAS1 (ENSONIG00000012507)	rpl17 (ENSONIG00000012509)	nkx6-1 (ENSONIG00000040109)	gpat3 (ENSONIG00000012514)	HELQ (ENSONIG00000012532)	mrps18c (ENSONIG00000012527)	hpse (ENSONIG00000012533) ##22	ppp3ccb (ENSONIG00000012541)	dmtn (ENSONIG00000012554)	pbdc1 (ENSONIG00000012558)	xpo7 (ENSONIG00000012566)	ENSONIG00000019086	ENSONIG00000003620	GFRA2 (ENSONIG00000012573)	ATP6V1B2 (ENSONIG00000012574)	TCF7L1 (ENSONIG00000012578)	ENSONIG00000012584	ENSONIG00000012587	dusp11 (ENSONIG00000032244)	dbnla (ENSONIG00000012589)	COX5B (ENSONIG00000012594)	COX5B (ENSONIG00000012596)
Midas cichlid	MODERN SPECIES	573							ENSACIG00000020015	ENSACIG00000020036	MFHAS1 (ENSACIG00000020042)	rpl17 (ENSACIG00000020062)	nkx6.1 (ENSACIG00000020153)	gpat3 (ENSACIG00000020168)	abraxas1 (ENSACIG00000020189)	HELQ (ENSACIG00000020216)	mrps18c (ENSACIG00000020253)	hpse (ENSACIG00000020277) ##22	ppp3ccb (ENSACIG00000020334)	dmtn (ENSACIG00000020357)	pbdc1 (ENSACIG00000020377)
Pomacentridae	ANCESTRAL SPECIES	84	ENSGT00510000047669	ENSGT00530000066485	ENSGT00390000008196	ENSGT00390000014471	ENSGT00530000063749.c.b	ENSGT00940000157979	ENSGT00940000159623	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Pomacentridae_A	ANCESTRAL SPECIES	81	ENSGT00530000066485	ENSGT00390000008196	ENSGT00390000014471	ENSGT00530000063749.c.b	ENSGT00940000157979	ENSGT00940000159623	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350.i	ENSGT00940000157350.j	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a.j	ENSGT00390000011010.a.a.i	ENSGT00940000164226.a.b	ENSGT00940000155782
Spiny chromis	MODERN SPECIES	2301														mrps18c (ENSAPOG00000019045)	HELQ (ENSAPOG00000019033)	hpse (ENSAPOG00000018987) ##22	MYL5 (ENSAPOG00000018968)	ppp3ccb (ENSAPOG00000018343)
Amphiprion	ANCESTRAL SPECIES	340															ENSGT00940000157350.i.b	ENSGT00390000004874.a.b ##22	ENSGT00940000163023
Orange clownfish	MODERN SPECIES	7	GFRA2 (ENSAPEG00000022593)	xpo7 (ENSAPEG00000022620)	pbdc1 (ENSAPEG00000022681)	dmtn (ENSAPEG00000022699)	ppp3ccb (ENSAPEG00000022727)	dmtn (ENSAPEG00000022751)	ENSAPEG00000022758	nkx6.1 (ENSAPEG00000022770)	ENSAPEG00000022783	ENSAPEG00000022795	gpat3 (ENSAPEG00000022834)	abraxas1 (ENSAPEG00000022912)	ENSAPEG00000022927	mrps18c (ENSAPEG00000022956)	HELQ (ENSAPEG00000022964)	hpse (ENSAPEG00000023005) ##22	gpat3 (ENSAPEG00000023036)	abraxas1 (ENSAPEG00000023045)	ENSAPEG00000023053	mrps18c (ENSAPEG00000023068)	HELQ (ENSAPEG00000023153)	MYL5 (ENSAPEG00000023657)	rpl17 (ENSAPEG00000024012)	MFHAS1 (ENSAPEG00000024047)	ppp1r3b (ENSAPEG00000024052)	ENSAPEG00000024060	ENSAPEG00000024073	ENSAPEG00000024109	fktn (ENSAPEG00000024117)	UFC1 (ENSAPEG00000024125)	ENSAPEG00000024130
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00940000156729	ENSGT00390000002634.a.f.b.a.a.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000166544.a	ENSGT00950000183041.C	ENSGT00940000154856.B.c	ENSGT00940000161915.b	ENSGT00940000155657	ENSGT00410000025802	ENSGT00940000154704.c.c	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00940000154314.a	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b
Aplocheiloidei	ANCESTRAL SPECIES	62														ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b
Mangrove rivulus	MODERN SPECIES	101														COX5B (ENSKMAG00000016989)	dbnla (ENSKMAG00000016958)	hpse (ENSKMAG00000016940) ##22	ppp3ccb (ENSKMAG00000016898)	dmtn (ENSKMAG00000016868)	pbdc1 (ENSKMAG00000016856)	xpo7 (ENSKMAG00000016721)	GFRA2 (ENSKMAG00000016668)	ATP6V1B2 (ENSKMAG00000016556)	dusp11 (ENSKMAG00000016529)	ENSKMAG00000016521	tcf7l1a (ENSKMAG00000016503)	HELQ (ENSKMAG00000016486)	mrps18c (ENSKMAG00000016467)	abraxas1 (ENSKMAG00000016436)	ENSKMAG00000016409	gpat3 (ENSKMAG00000016366)	nkx6.1 (ENSKMAG00000016346)
Turquoise killifish	MODERN SPECIES	1623	ENSNFUG00015014556	ENSNFUG00015014529	prkag3b (ENSNFUG00015014015)	FBXW2 (ENSNFUG00015013997)	SPTLC1 (ENSNFUG00015013928)	REEP5 (ENSNFUG00015013902)	ENSNFUG00015013896	megf10 (ENSNFUG00015013109)	prrc1 (ENSNFUG00015013046)	lmnb1 (ENSNFUG00015012943)	slc27a6 (ENSNFUG00015012283)	slc12a2 (ENSNFUG00015006560)	Nfu_g_1_014200 (ENSNFUG00015006129)	DBNL (ENSNFUG00015006118)	ENSNFUG00015006108	hpse (ENSNFUG00015006098) ##22	ppp3ccb (ENSNFUG00015005852)	dmtn (ENSNFUG00015005817)	PBDC1 (ENSNFUG00015005809)	ENSNFUG00015005805	xpo7 (ENSNFUG00015005734)	ENSNFUG00015005686	ENSNFUG00015005665	ENSNFUG00015005659	DHRSX (ENSNFUG00015005653)	ENSNFUG00015005649	asmt (ENSNFUG00015005631)	GULP1 (ENSNFUG00015005561)	COL5A2 (ENSNFUG00015005052)	ENSNFUG00015005006	ENSNFUG00015005002
Cyprinodontoidei	ANCESTRAL SPECIES	36	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000165329	ENSGT00940000156369	ENSGT00390000004945	ENSGT00940000156510.h	ENSGT00530000064469	ENSGT00940000157873	ENSGT00410000025802	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00390000009948.d	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000165329	ENSGT00940000156369	ENSGT00390000004945	ENSGT00940000156510.h	ENSGT00530000064469	ENSGT00940000157873	ENSGT00410000025802	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00390000009948.d.g	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000165329	ENSGT00940000156369	ENSGT00390000004945	ENSGT00940000156510.h	ENSGT00530000064469	ENSGT00940000157873	ENSGT00410000025802	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00390000009948.d.g	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.m	ENSGT00390000011010.a.a.n	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b
NAME_6	ANCESTRAL SPECIES	111	ENSGT00940000165329	ENSGT00940000156369	ENSGT00390000004945	ENSGT00940000156510.h	ENSGT00530000064469	ENSGT00940000157873	ENSGT00410000025802	ENSGT00390000005989.b.b	ENSGT00940000155860.b	ENSGT00390000009948.d.g	ENSGT00940000155782	ENSGT00940000164226.a.b	ENSGT00390000011010.a.a.m	ENSGT00390000011010.a.a.n	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000157350	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00940000160897	ENSGT00950000183010.a.a.b
Amazon molly	MODERN SPECIES	557	fbxw2 (ENSPFOG00000004564)	ENSPFOG00000004668	pomk (ENSPFOG00000004795)	TSHR (ENSPFOG00000004844)	ENSPFOG00000005127	reep5 (ENSPFOG00000005207)	ENSPFOG00000005275	stc1l (ENSPFOG00000005286)	FGFR1 (ENSPFOG00000005362)	marchf5l (ENSPFOG00000005642)	actr1b (ENSPFOG00000005649)	npy8ar (ENSPFOG00000005748)	COX5B (ENSPFOG00000005799)	COX5B (ENSPFOG00000005827)	ENSPFOG00000005850	hpse (ENSPFOG00000005950) ##22	ppp3ccb (ENSPFOG00000006179)	dmtn (ENSPFOG00000006452)	pbdc1 (ENSPFOG00000006527)	xpo7 (ENSPFOG00000006620)	ENSPFOG00000006913	ENSPFOG00000021790	GFRA2 (ENSPFOG00000006931)	ATP6V1B2 (ENSPFOG00000006973)	ENSPFOG00000023791	PAM (ENSPFOG00000021753)
Sailfin molly	MODERN SPECIES	218	ENSPLAG00000013158	PAM (ENSPLAG00000000309)	pomk (ENSPLAG00000013128)	ENSPLAG00000013114	ENSPLAG00000013068	reep5 (ENSPLAG00000000824)	ENSPLAG00000013032	stc1l (ENSPLAG00000013025)	FGFR1 (ENSPLAG00000013010)	ENSPLAG00000012981	marchf5l (ENSPLAG00000012957)	actr1b (ENSPLAG00000012936)	npy8ar (ENSPLAG00000012889)	COX5B (ENSPLAG00000012868)	dbnla (ENSPLAG00000012851)	hpse (ENSPLAG00000012813) ##22	ppp3ccb (ENSPLAG00000012804)	dmtn (ENSPLAG00000012761)	pbdc1 (ENSPLAG00000012728)	xpo7 (ENSPLAG00000012688)
Guppy	MODERN SPECIES	442	PAM (ENSPREG00000013277)	pomk (ENSPREG00000013267)	ENSPREG00000013234	ENSPREG00000013208	reep5 (ENSPREG00000013185)	ENSPREG00000013177	stc1l (ENSPREG00000013159)	FGFR1 (ENSPREG00000013099)	ENSPREG00000013077	marchf5l (ENSPREG00000013049)	actr1b (ENSPREG00000013010)	npy8ar (ENSPREG00000012998)	COX5B (ENSPREG00000012980)	COX5B (ENSPREG00000012969)	ENSPREG00000012952	hpse (ENSPREG00000012925) ##22	ppp3ccb (ENSPREG00000012883)	dmtn (ENSPREG00000012844)	pbdc1 (ENSPREG00000012829)	xpo7 (ENSPREG00000012766)	GFRA2 (ENSPREG00000012717)	ATP6V1B2 (ENSPREG00000012684)	dusp11 (ENSPREG00000012668)	ENSPREG00000012655	ENSPREG00000012639	HELQ (ENSPREG00000012605)	mrps18c (ENSPREG00000012593)	abraxas1 (ENSPREG00000012574)	gpat3 (ENSPREG00000012518)	ENSPREG00000012492	nkx6.1 (ENSPREG00000012467)
Platyfish	MODERN SPECIES	22	PAM (ENSXMAG00000016290)	pomk (ENSXMAG00000016330)	TSHR (ENSXMAG00000016333)	ENSXMAG00000016373	ENSXMAG00000025347	reep5 (ENSXMAG00000016377)	ENSXMAG00000016389	stc1l (ENSXMAG00000016392)	FGFR1 (ENSXMAG00000016402)	ENSXMAG00000022806	marchf5l (ENSXMAG00000000352)	actr1b (ENSXMAG00000000355)	npy8ar (ENSXMAG00000000370)	ENSXMAG00000000374	dbnla (ENSXMAG00000000382)	hpse (ENSXMAG00000000390) ##22	ppp3ccb (ENSXMAG00000000406)	dmtn (ENSXMAG00000029718)	pbdc1 (ENSXMAG00000025033)	xpo7 (ENSXMAG00000000433)	ENSXMAG00000010553	GFRA2 (ENSXMAG00000023717)	ATP6V1B2 (ENSXMAG00000012143)	dusp11 (ENSXMAG00000023145)	ENSXMAG00000028643	tcf7l1a (ENSXMAG00000012205)	ENSXMAG00000012563	mrps18c (ENSXMAG00000012555)	gpat3 (ENSXMAG00000012498)	nkx6.1 (ENSXMAG00000020939)	rpl17 (ENSXMAG00000012219)
NAME_4	ANCESTRAL SPECIES	382														ENSGT00390000011010.a.a.o	ENSGT00940000156732.a.a	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a
Mummichog	MODERN SPECIES	2267														COX5B (ENSFHEG00000000204)	ENSFHEG00000008136	hpse (ENSFHEG00000008117) ##22	ppp3ccb (ENSFHEG00000008093)	dmtn (ENSFHEG00000008041)	pbdc1 (ENSFHEG00000008012)	xpo7 (ENSFHEG00000007999)	ddx55 (ENSFHEG00000007912)	eif2b1 (ENSFHEG00000007837)	bcl7a (ENSFHEG00000007792)	ENSFHEG00000007782	ENSFHEG00000007767	ENSFHEG00000007739	denr (ENSFHEG00000007729)	ENSFHEG00000007683	HIP1R (ENSFHEG00000007666)	fbxo18 (ENSFHEG00000007533)	ENSFHEG00000007491
Sheepshead minnow	MODERN SPECIES	1126																hpse (ENSCVAG00000006461) ##22	ppp3ccb (ENSCVAG00000006427)	ENSCVAG00000005841	xpo7 (ENSCVAG00000005823)
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000154399	ENSGT00940000155147	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT01090000260978	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000154399	ENSGT00940000155147	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT01090000260978	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00990000208027	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a
Chinese medaka	MODERN SPECIES	5014																hpse (ENSOSIG00000003939) ##22
Japanese Medaka HdrR	MODERN SPECIES	3	capslb (ENSORLG00000028878)	ENSORLG00000022007	myo5b (ENSORLG00000018326)	myo5b (ENSORLG00000028096)	ENSORLG00000028036	ppp1r3b (ENSORLG00000020468)	lmbrd2b (ENSORLG00000022269)	MFHAS1 (ENSORLG00000022182)	rpl17 (ENSORLG00000028403)	ENSORLG00000028484	nkx6.1 (ENSORLG00000019018)	gpat3 (ENSORLG00000023001)	abraxas1 (ENSORLG00000022037)	ENSORLG00000027371	HELQ (ENSORLG00000022717)	hpse (ENSORLG00000020343) ##22	ppp3ccb (ENSORLG00000026198)	dmtn (ENSORLG00000030150)	pbdc1 (ENSORLG00000019795)	xpo7 (ENSORLG00000025259)	GFRA2 (ENSORLG00000029388)	ENSORLG00000022641	ATP6V1B2 (ENSORLG00000029718)	dusp11 (ENSORLG00000023976)	ENSORLG00000023584	tcf7l1a (ENSORLG00000022421)	ENSORLG00000026012	ENSORLG00000022498	COX5B (ENSORLG00000019521)	ENSORLG00000024890	npy8ar (ENSORLG00000000273)
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000154399	ENSGT00940000155147	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT01090000260978	ENSGT00940000159475.c	ENSGT00390000018651.a	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a	ENSGT00940000155860.b
Indian medaka	MODERN SPECIES	30	slc31a1 (ENSOMEG00000005286)	ENSOMEG00000005253	capslb (ENSOMEG00000005269)	ENSOMEG00000005239	myo5b (ENSOMEG00000005222)	ENSOMEG00000005130	ppp1r3b (ENSOMEG00000005119)	lmbrd2b (ENSOMEG00000005113)	MFHAS1 (ENSOMEG00000005094)	rpl17 (ENSOMEG00000005081)	nkx6.1 (ENSOMEG00000005058)	gpat3 (ENSOMEG00000005047)	abraxas1 (ENSOMEG00000005029)	mrps18c (ENSOMEG00000005009)	HELQ (ENSOMEG00000004983)	hpse (ENSOMEG00000004923) ##22	ppp3ccb (ENSOMEG00000004900)	dmtn (ENSOMEG00000004866)	pbdc1 (ENSOMEG00000004797)	xpo7 (ENSOMEG00000004832)	ENSOMEG00000004783	GFRA2 (ENSOMEG00000004769)	ENSOMEG00000000874	ATP6V1B2 (ENSOMEG00000004736)	ENSOMEG00000004713	dusp11 (ENSOMEG00000004705)	ENSOMEG00000004697	tcf7l1a (ENSOMEG00000004675)	ENSOMEG00000004663	COX5B (ENSOMEG00000004641)	ENSOMEG00000004632
Javanese ricefish	MODERN SPECIES	3	wdr36 (ENSOJAG00000015764)	slc25a46 (ENSOJAG00000015735)	atp6v1g1 (ENSOJAG00000015700)	slc31a1 (ENSOJAG00000015685)	capslb (ENSOJAG00000015672)	ENSOJAG00000015658	myo5b (ENSOJAG00000015623)	ENSOJAG00000015608	ppp1r3b (ENSOJAG00000015591)	MFHAS1 (ENSOJAG00000015475)	rpl17 (ENSOJAG00000015430)	nkx6.1 (ENSOJAG00000015395)	abraxas1 (ENSOJAG00000015086)	mrps18c (ENSOJAG00000015075)	ENSOJAG00000014738	hpse (ENSOJAG00000014729) ##22	ppp3ccb (ENSOJAG00000012553)	dmtn (ENSOJAG00000012376)	pbdc1 (ENSOJAG00000012370)	ENSOJAG00000012326	GFRA2 (ENSOJAG00000012287)	dusp11 (ENSOJAG00000012276)	ENSOJAG00000012269	tcf7l1a (ENSOJAG00000012257)	ENSOJAG00000012239	ENSOJAG00000012228	COX5B (ENSOJAG00000012217)	npy8ar (ENSOJAG00000012195)	actr1b (ENSOJAG00000012118)	marchf5l (ENSOJAG00000012113)	kctd9b (ENSOJAG00000012023)
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT01050000244924.a.a.a	ENSGT00940000156729	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00390000002634.a.f.b.a.a.a	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.b.a.a	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00940000156744.p	ENSGT00390000004524	ENSGT00530000064123	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00940000155214.k.a	ENSGT00530000062932	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d	ENSGT00940000154314.a
Fugu	MODERN SPECIES	18	fubp3 (ENSTRUG00000018658)	ASS1 (ENSTRUG00000018657)	surf4 (ENSTRUG00000018656)	surf2 (ENSTRUG00000018655)	bbln (ENSTRUG00000028996)	ENSTRUG00000018653	dnm1a (ENSTRUG00000018652)	golga2 (ENSTRUG00000018651)	MFHAS1 (ENSTRUG00000018650)	rpl17 (ENSTRUG00000025797)	NKX6-1 (ENSTRUG00000026306)	gpat3 (ENSTRUG00000018646)	abraxas1 (ENSTRUG00000018645)	mrps18c (ENSTRUG00000028095)	HELQ (ENSTRUG00000018644)	hpse (ENSTRUG00000018643) ##22	ppp3ccb (ENSTRUG00000018642)	dmtn (ENSTRUG00000018641)	pbdc1 (ENSTRUG00000027342)	xpo7 (ENSTRUG00000001082)	ENSTRUG00000032753	ENSTRUG00000030281	ENSTRUG00000033476	GFRA2 (ENSTRUG00000018638)	ATP6V1B2 (ENSTRUG00000018637)	ENSTRUG00000018635	tcf7l1a (ENSTRUG00000018634)	dbnla (ENSTRUG00000018633)	npy8ar (ENSTRUG00000018631)	actr1b (ENSTRUG00000018630)	marchf5l (ENSTRUG00000018629)
Tetraodon	MODERN SPECIES	19	fubp3 (ENSTNIG00000009019)	ASS1 (ENSTNIG00000009018)	surf4 (ENSTNIG00000004786)	surf2 (ENSTNIG00000009017)	bbln (ENSTNIG00000009016)	ENSTNIG00000009015	dnm1a (ENSTNIG00000009014)	golga2 (ENSTNIG00000009013)	MFHAS1 (ENSTNIG00000009012)	rpl17 (ENSTNIG00000009011)	nkx6.1 (ENSTNIG00000009010)	gpat3 (ENSTNIG00000005676)	abraxas1 (ENSTNIG00000005675)	mrps18c (ENSTNIG00000005674)	HELQ (ENSTNIG00000005673)	hpse (ENSTNIG00000005672) ##22	ppp3ccb (ENSTNIG00000005671)	dmtn (ENSTNIG00000005670)	pbdc1 (ENSTNIG00000005669)	xpo7 (ENSTNIG00000004671)	GFRA2 (ENSTNIG00000013609)	ENSTNIG00000000400	ENSTNIG00000013608	ENSTNIG00000013607	dusp11 (ENSTNIG00000013606)	ENSTNIG00000013605	tcf7l1a (ENSTNIG00000013604)	dbnla (ENSTNIG00000013603)	COX5B (ENSTNIG00000013602)	npy8ar (ENSTNIG00000013601)	actr1b (ENSTNIG00000013600)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000156729	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.b.a.a.d	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	94	ENSLBEG00000019719	myo5b (ENSLBEG00000019611)	ENSLBEG00000019590	capslb (ENSLBEG00000019559)	ENSLBEG00000019533	hsdl2 (ENSLBEG00000019478)	PTBP3 (ENSLBEG00000019422)	ugcg (ENSLBEG00000019387)	MFHAS1 (ENSLBEG00000019368)	rpl17 (ENSLBEG00000019276)	nkx6.1 (ENSLBEG00000019245)	gpat3 (ENSLBEG00000019197)	mrps18c (ENSLBEG00000019174)	abraxas1 (ENSLBEG00000019087)	HELQ (ENSLBEG00000019017)	hpse (ENSLBEG00000018994) ##22	ppp3ccb (ENSLBEG00000018935)	dmtn (ENSLBEG00000018887)	pbdc1 (ENSLBEG00000018849)	xpo7 (ENSLBEG00000018784)
Ballan wrasse	MODERN SPECIES	1575													abraxas1 (ENSLBEG00000021829)	mrps18c (ENSLBEG00000021861)	HELQ (ENSLBEG00000021886)	ENSLBEG00000021938 ##22
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000156729	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.b.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Perciformes	ANCESTRAL SPECIES	16	ENSGT00390000002634.a.f.b.a.a.b	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.b.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT00940000165965	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000161587	ENSGT00940000155782
Perciformes_a	ANCESTRAL SPECIES	12												ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000161587	ENSGT00940000155782
Channel bull blenny	MODERN SPECIES	101													abraxas1 (ENSCGOG00000019521)	mrps18c (ENSCGOG00000019519)	HELQ (ENSCGOG00000019453)	hpse (ENSCGOG00000019450) ##22
Pike perch	MODERN SPECIES	74										gpat3 (ENSSLUG00000001734)	abraxas1 (ENSSLUG00000001792)	mrps18c (ENSSLUG00000001799)	HELQ (ENSSLUG00000001903)	ENSSLUG00000002171	ENSSLUG00000002174	hpse (ENSSLUG00000002177) ##22	MYL5 (ENSSLUG00000002188)	ppp3ccb (ENSSLUG00000002445)	dmtn (ENSSLUG00000006796)	pbdc1 (ENSSLUG00000006808)	ENSSLUG00000006821	ENSSLUG00000006823	xpo7 (ENSSLUG00000007107)	ENSSLUG00000010724	ENSSLUG00000010726	GFRA2 (ENSSLUG00000010730)	ATP6V1B2 (ENSSLUG00000010743)	dusp11 (ENSSLUG00000010771)	ENSSLUG00000010774	ENSSLUG00000010776	ENSSLUG00000010781
Cottioidei	ANCESTRAL SPECIES	77				ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT00940000165965	ENSGT00530000063424.b	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b
Lumpfish	MODERN SPECIES	3	aif1l (ENSCLMG00005011663)	zgc:171695 (ENSCLMG00005011662)	capslb (ENSCLMG00005011661)	ENSCLMG00005011660	myo5b (ENSCLMG00005010955)	ENSCLMG00005010944	ENSCLMG00005010943	lmbrd2b (ENSCLMG00005010878)	MFHAS1 (ENSCLMG00005010874)	rpl17 (ENSCLMG00005010868)	nkx6.1 (ENSCLMG00005010867)	ENSCLMG00005010866	ENSCLMG00005010865	mrps18c (ENSCLMG00005010864)	HELQ (ENSCLMG00005010853)	hpse (ENSCLMG00005010845) ##22	PPP3CB (ENSCLMG00005006624)	dmtn (ENSCLMG00005006579)	pbdc1 (ENSCLMG00005006578)	xpo7 (ENSCLMG00005006304)	ENSCLMG00005006283	ENSCLMG00005006281	dusp11 (ENSCLMG00005006277)	ENSCLMG00005006275	tcf7l1a (ENSCLMG00005006271)	dbnla (ENSCLMG00005006270)	COX5B (ENSCLMG00005006269)	npy8ar (ENSCLMG00005006266)	ACTR1B (ENSCLMG00005005975)	marchf5l (ENSCLMG00005005968)
Stickleback	MODERN SPECIES	296														abraxas1 (ENSGACG00000001190)	HELQ (ENSGACG00000001186)	hpse (ENSGACG00000001185) ##22	ppp3ccb (ENSGACG00000001184)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000156729	ENSGT00940000156466	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.b.a.b	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6							ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005001015	ENSLCRG00005001019	ENSLCRG00005001028	ENSLCRG00005001069	ENSLCRG00005001188	ENSLCRG00005001261	lama1 (ENSLCRG00005001291)	zbtb14 (ENSLCRG00005002230)	ENSLCRG00005002240	ENSLCRG00005003020	gcm2 (ENSLCRG00005003026)	galnt11 (ENSLCRG00005003033)	ENSLCRG00005003055	ENSLCRG00005003070	ENSLCRG00005003103	hpse (ENSLCRG00005003105) ##22	MYL5 (ENSLCRG00005003106)	ppp3ccb (ENSLCRG00005003155)	dmtn (ENSLCRG00005003630)	pbdc1 (ENSLCRG00005003631)	xpo7 (ENSLCRG00005003644)	ENSLCRG00005004651	ATP6V1B2 (ENSLCRG00005004655)	dusp11 (ENSLCRG00005004730)	ENSLCRG00005004732	tcf7l1a (ENSLCRG00005004734)	dbnla (ENSLCRG00005004741)	COX5B (ENSLCRG00005004745)	ENSLCRG00005004751	ENSLCRG00005004756	ENSLCRG00005004757
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010010649	ENSSAUG00010010547	capslb (ENSSAUG00010010546)	ENSSAUG00010010544	ENSSAUG00010010543	ENSSAUG00010010542	ENSSAUG00010010540	ENSSAUG00010010538	ENSSAUG00010020934	ENSSAUG00010020931	ENSSAUG00010020927	ENSSAUG00010020926	ENSSAUG00010020923	abraxas1 (ENSSAUG00010020919)	mrps18c (ENSSAUG00010020909)	hpse (ENSSAUG00010020907) ##22	ppp3ccb (ENSSAUG00010020322)	dmtn (ENSSAUG00010020304)	ENSSAUG00010020302	HELQ (ENSSAUG00010020300)	hpse (ENSSAUG00010020296) ##22	MYL5 (ENSSAUG00010020284)	ppp3ccb (ENSSAUG00010018912)	ENSSAUG00010018905	dmtn (ENSSAUG00010018729)	pbdc1 (ENSSAUG00010018718)	xpo7 (ENSSAUG00010015454)	ENSSAUG00010015431	ENSSAUG00010015430	ENSSAUG00010015429	ATP6V1B2 (ENSSAUG00010012776)
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010010542	ENSSAUG00010010540	ENSSAUG00010010538	ENSSAUG00010020934	ENSSAUG00010020931	ENSSAUG00010020927	ENSSAUG00010020926	ENSSAUG00010020923	abraxas1 (ENSSAUG00010020919)	mrps18c (ENSSAUG00010020909)	hpse (ENSSAUG00010020907) ##22	ppp3ccb (ENSSAUG00010020322)	dmtn (ENSSAUG00010020304)	ENSSAUG00010020302	HELQ (ENSSAUG00010020300)	hpse (ENSSAUG00010020296) ##22	MYL5 (ENSSAUG00010020284)	ppp3ccb (ENSSAUG00010018912)	ENSSAUG00010018905	dmtn (ENSSAUG00010018729)	pbdc1 (ENSSAUG00010018718)	xpo7 (ENSSAUG00010015454)	ENSSAUG00010015431	ENSSAUG00010015430	ENSSAUG00010015429	ATP6V1B2 (ENSSAUG00010012776)	dusp11 (ENSSAUG00010012742)	ENSSAUG00010012741	ENSSAUG00010012739	ENSSAUG00010012738	tcf7l1a (ENSSAUG00010012735)
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000156729	ENSGT00940000156466	ENSGT00510000048500	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023.b	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Anabantaria	ANCESTRAL SPECIES	12	ENSGT01020000232179	ENSGT00940000156466	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.a	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023.b	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000156466	ENSGT01030000234908	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00500000044904.a.b.e.a	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00940000161682.i	ENSGT00390000004874.a.b ##22	ENSGT00940000163023.b	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000158107.a.a	ENSGT00940000165717	ENSGT01030000234539.b.b.a.i
Climbing perch	MODERN SPECIES	3	ENSATEG00000023303	ENSATEG00000023327	ENSATEG00000023331	ENSATEG00000023334	ENSATEG00000023346	ENSATEG00000023366	ENSATEG00000023381	ENSATEG00000023384	ENSATEG00000023387	nkx6.1 (ENSATEG00000023404)	gpat3 (ENSATEG00000023407)	abraxas1 (ENSATEG00000026181)	mrps18c (ENSATEG00000027902)	HELQ (ENSATEG00000023420)	ENSATEG00000023434	hpse (ENSATEG00000023437) ##22	ENSATEG00000023445	ENSATEG00000023456	dmtn (ENSATEG00000023472)	pbdc1 (ENSATEG00000025714)	xpo7 (ENSATEG00000023484)	GFRA2 (ENSATEG00000000060)	ENSATEG00000000167	dusp11 (ENSATEG00000000234)	ENSATEG00000026312	ENSATEG00000000311	tcf7l1a (ENSATEG00000025217)	dbnla (ENSATEG00000000324)	ENSATEG00000000343	DUSP26 (ENSATEG00000027239)	ENSATEG00000000385
Zig-zag eel	MODERN SPECIES	3	ENSMAMG00000012715	ENSMAMG00000012623	ENSMAMG00000012606	ENSMAMG00000012597	ENSMAMG00000012591	ENSMAMG00000012536	ENSMAMG00000012527	ENSMAMG00000012520	ENSMAMG00000012465	nkx6.1 (ENSMAMG00000012450)	ENSMAMG00000012447	gpat3 (ENSMAMG00000012423)	abraxas1 (ENSMAMG00000012397)	mrps18c (ENSMAMG00000026215)	HELQ (ENSMAMG00000012364)	hpse (ENSMAMG00000012352) ##22	ENSMAMG00000012337	ENSMAMG00000012284	dmtn (ENSMAMG00000012271)	pbdc1 (ENSMAMG00000012250)	xpo7 (ENSMAMG00000012156)	GFRA2 (ENSMAMG00000012126)	ENSMAMG00000012090	ENSMAMG00000012062	ENSMAMG00000012036	tcf7l1a (ENSMAMG00000012013)	dbnla (ENSMAMG00000011997)	ENSMAMG00000011987	npy8ar (ENSMAMG00000011965)	ENSMAMG00000011939	ENSMAMG00000011920
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000156729	ENSGT00940000156466	ENSGT00510000048500	ENSGT00510000049239.b.a	ENSGT00940000155402.a.b	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023.b	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000156729	ENSGT00940000156466	ENSGT00510000048500	ENSGT01030000234908	ENSGT00940000155402.a.b.l	ENSGT00950000183234	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023.b	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00940000161915.b	ENSGT00940000155657	ENSGT00410000025802	ENSGT00940000154704.c.c
Tongue sole	MODERN SPECIES	5	PTBP3 (ENSCSEG00000020483)	hsdl2 (ENSCSEG00000020489)	capslb (ENSCSEG00000020500)	ENSCSEG00000020503	myo5b (ENSCSEG00000020510)	ENSCSEG00000020514	ENSCSEG00000020516	lmbrd2b (ENSCSEG00000020521)	MFHAS1 (ENSCSEG00000020534)	rpl17 (ENSCSEG00000020536)	ENSCSEG00000000698	gpat3 (ENSCSEG00000000703)	abraxas1 (ENSCSEG00000000705)	mrps18c (ENSCSEG00000000711)	HELQ (ENSCSEG00000000724)	hpse (ENSCSEG00000000739) ##22	MYL5 (ENSCSEG00000000748)	ppp3ccb (ENSCSEG00000000754)	PLPP1 (ENSCSEG00000000770)	CSGALNACT1 (ENSCSEG00000000782)	nxnl2 (ENSCSEG00000000798)	gng10 (ENSCSEG00000000805)	ENSCSEG00000000810	rxfp3 (ENSCSEG00000000813)	slc45a2 (ENSCSEG00000000815)	amacr (ENSCSEG00000000821)	ENSCSEG00000000839	NUP54 (ENSCSEG00000000867)	PPEF2 (ENSCSEG00000000902)	ENSCSEG00000000923	ENSCSEG00000000928
Carangaria_A	ANCESTRAL SPECIES	48							ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000161682.i	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000156168.B	ENSGT00940000155068.a.a	ENSGT00940000155847.c	ENSGT00940000164699	ENSGT00940000157038.a.b	ENSGT00940000156732.a.a	ENSGT00390000011010.a.a	ENSGT00940000164226.a.b	ENSGT00940000155782	ENSGT00390000009948.d
Seriola	ANCESTRAL SPECIES	163							ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000161682.i	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b
Greater amberjack	MODERN SPECIES	224						ENSSDUG00000015917	lmbrd2b (ENSSDUG00000015850)	ppp1r3b (ENSSDUG00000015830)	MFHAS1 (ENSSDUG00000015819)	rpl17 (ENSSDUG00000015761)	nkx6.1 (ENSSDUG00000015738)	gpat3 (ENSSDUG00000015712)	abraxas1 (ENSSDUG00000015688)	mrps18c (ENSSDUG00000015676)	HELQ (ENSSDUG00000015665)	hpse (ENSSDUG00000015608) ##22	ENSSDUG00000015581	ppp3ccb (ENSSDUG00000015519)	dmtn (ENSSDUG00000015467)
Barramundi perch	MODERN SPECIES	605												gpat3 (ENSLCAG00010010484)	abraxas1 (ENSLCAG00010010519)	mrps18c (ENSLCAG00010010526)	HELQ (ENSLCAG00010010535)	hpse (ENSLCAG00010010557) ##22	ENSLCAG00010010564	ppp3ccb (ENSLCAG00010010739)	dmtn (ENSLCAG00010011485)	pbdc1 (ENSLCAG00010011488)
Protacanthopterygii	ANCESTRAL SPECIES	77	ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234908	ENSGT00940000156466	ENSGT00390000018651.a	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b.q	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b	ENSGT00940000161886	ENSGT00940000157400	ENSGT00940000158907.c	ENSGT00390000004624.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000002096	ENSGT00390000005102	ENSGT00940000156471.a	ENSGT00510000047107.B.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	289		ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b.g	ENSGT01030000234908.d	ENSGT00940000156466.tb.b	ENSGT00390000018651.a.f	ENSGT00940000159475.c.i	ENSGT00530000063205.B.k	ENSGT00940000158928.n	ENSGT00950000183010.a.a.b.d	ENSGT00940000160897.m	ENSGT01030000234574.B.c.b.a.a.a.h	ENSGT00530000063424.b.q	ENSGT00940000157350.h	ENSGT00390000004874.a.b.i ##22	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350.g	ENSGT00390000004874.a.b.j ##22	ENSGT00940000163023	ENSGT00940000160508.c	ENSGT00940000157215.r.a	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b.a	ENSGT00940000161886	ENSGT00940000157400.e	ENSGT00940000158907.c.c	ENSGT00390000004624.a.a.b	ENSGT00530000063460.A.b.k.a	ENSGT00390000005102.dd.a
Huchen	MODERN SPECIES	2080																hpse (ENSHHUG00000010814) ##22	btc (ENSHHUG00000010852)	rxfp3 (ENSHHUG00000010861)	ENSHHUG00000010867
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c	ENSGT00940000156466.tb.a.b	ENSGT00390000018651.a.e	ENSGT00940000159475.c.j	ENSGT00530000063205.B.l	ENSGT00940000158928.m	ENSGT00950000183010.a.a.b.c	ENSGT00940000160897.n	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00530000063424.b.q	ENSGT00990000209419	ENSGT00940000157350.h	ENSGT00390000004874.a.b.i ##22	ENSGT00940000160508.d	ENSGT00940000157215.r.b	ENSGT00950000182914.a.b.d	ENSGT01030000234534.B.a.a.a.b.b	ENSGT00940000157400.f	ENSGT00940000158907.c.d	ENSGT00390000004624.a.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b.k.b	ENSGT00390000005102.dd.b	ENSGT00940000156471.a.f	ENSGT00510000047107.B.c.c	ENSGT01100000263544.c.a.a.b.h	ENSGT00390000009453.gb.d	ENSGT00940000155983.a.b.c
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00390000006320.r	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c	ENSGT00940000156466.tb.a.b	ENSGT00390000018651.a.e	ENSGT00940000159475.c.j	ENSGT00530000063205.B.l	ENSGT00940000158928.m	ENSGT00950000183010.a.a.b.c	ENSGT00940000160897.n	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00530000063424.b.q	ENSGT01000000220771	ENSGT00390000004874.a.b.i ##22	ENSGT00940000160508.d	ENSGT00940000157215.r.b	ENSGT00950000182914.a.b.d	ENSGT01030000234534.B.a.a.a.b.b	ENSGT00940000157400.f	ENSGT00940000158907.c.d	ENSGT00390000004624.a.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b.k.b	ENSGT00390000005102.dd.b	ENSGT00940000156471.a.f	ENSGT00510000047107.B.c.c	ENSGT01100000263544.c.a.a.b.h	ENSGT00390000009453.gb.d	ENSGT00940000155983.a.b.c
Rainbow trout	MODERN SPECIES	3	SKP2 (ENSOMYG00000027423)	ENSOMYG00000026109	ENSOMYG00000073044	myo5b (ENSOMYG00000009470)	ENSOMYG00000004204	ENSOMYG00000004193	lmbrd2b (ENSOMYG00000003753)	ppp1r3b (ENSOMYG00000003161)	ENSOMYG00000028800	ENSOMYG00000028785	ENSOMYG00000028729	nkx6.1 (ENSOMYG00000028689)	ENSOMYG00000028373	abraxas1 (ENSOMYG00000028158)	ENSOMYG00000028141	hpse (ENSOMYG00000028106) ##22	btc (ENSOMYG00000049167)	ENSOMYG00000028049	rxfp3 (ENSOMYG00000028041)	rai14 (ENSOMYG00000028011)	fgf10a (ENSOMYG00000073584)	nnt (ENSOMYG00000027817)	ENSOMYG00000027650	ENSOMYG00000027609	ENSOMYG00000027557	ENSOMYG00000026766	rbp4l (ENSOMYG00000026485)	slc26a1 (ENSOMYG00000026463)	zgc:86764 (ENSOMYG00000026430)	ENSOMYG00000026405	ENSOMYG00000026392
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00390000006320.r	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c	ENSGT00940000156466.tb.a.b	ENSGT00390000018651.a.e	ENSGT00940000159475.c.j	ENSGT00530000063205.B.l	ENSGT00940000158928.m	ENSGT00950000183010.a.a.b.c	ENSGT00940000160897.n	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00530000063424.b.q	ENSGT01000000220771	ENSGT00390000004874.a.b.i ##22	ENSGT00940000160508.d	ENSGT00940000157215.r.b	ENSGT00950000182914.a.b.d	ENSGT01030000234534.B.a.a.a.b.b	ENSGT00940000157400.f	ENSGT00940000158907.c.d	ENSGT00390000004624.a.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b.k.b	ENSGT00390000005102.dd.b	ENSGT00940000156471.a.f	ENSGT00510000047107.B.c.c	ENSGT01100000263544.c.a.a.b.h	ENSGT00390000009453.gb.d	ENSGT00940000155983.a.b.c
Chinook salmon	MODERN SPECIES	33	RANBP3L (ENSOTSG00005025207)	skp2 (ENSOTSG00005025201)	ENSOTSG00005024755	myo5b (ENSOTSG00005003595)	ENSOTSG00005003363	capslb (ENSOTSG00005003361)	lmbrd2b (ENSOTSG00005001331)	ppp1r3b (ENSOTSG00005001175)	eri1 (ENSOTSG00005000916)	ENSOTSG00005000796	ENSOTSG00005047487	nkx6.1 (ENSOTSG00005047486)	gpat3 (ENSOTSG00005047195)	abraxas1 (ENSOTSG00005047192)	ENSOTSG00005047191	ENSOTSG00005047189 ##22	btc (ENSOTSG00005047188)	slc45a2 (ENSOTSG00005047187)	rxfp3 (ENSOTSG00005047185)	rai14 (ENSOTSG00005047183)	fgf10a (ENSOTSG00005047181)	nnt (ENSOTSG00005046844)	ENSOTSG00005046843	ENSOTSG00005046842	PDE6B (ENSOTSG00005046786)	rbp4l (ENSOTSG00005046782)	slc26a1 (ENSOTSG00005046781)	zgc:86764 (ENSOTSG00005046780)	ENSOTSG00005046779	ENSOTSG00005046778	dusp4 (ENSOTSG00005046777)
Salmo	ANCESTRAL SPECIES	13	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c	ENSGT00940000156466.tb.a.a.a	ENSGT00390000018651.a.e	ENSGT00940000159475.c.j	ENSGT00530000063205.B.l	ENSGT00940000158928.m	ENSGT00950000183010.a.a.b.c	ENSGT00940000160897.n	ENSGT01030000234574.B.c.b.a.a.a.g	ENSGT00530000063424.b.q	ENSGT00990000209419	ENSGT00940000157350.h	ENSGT00390000004874.a.b.i ##22	ENSGT00940000160508.d	ENSGT00940000157215.r.b	ENSGT00950000182914.a.b.d	ENSGT01030000234534.B.a.a.a.b.b	ENSGT00940000157400.f	ENSGT00940000158907.c.d	ENSGT00390000004624.a.a.a	ENSGT00940000166240	ENSGT00530000063460.A.b.k.b	ENSGT00390000005102.dd.b	ENSGT00940000156471.a.f	ENSGT00510000047107.B.c.c	ENSGT01100000263544.c.a.a.b.h	ENSGT00390000009453.gb.d	ENSGT00940000155983.a.b.c
River trout	MODERN SPECIES	6	myo5b (ENSSTUG00000020444)	ENSSTUG00000021260	capslb (ENSSTUG00000021281)	lmbrd2b (ENSSTUG00000021315)	ppp1r3b (ENSSTUG00000022102)	ENSSTUG00000022111	eri1 (ENSSTUG00000022117)	ENSSTUG00000022127	rpl17 (ENSSTUG00000022135)	nkx6.1 (ENSSTUG00000022167)	ENSSTUG00000022181	gpat3 (ENSSTUG00000022205)	abraxas1 (ENSSTUG00000022663)	ENSSTUG00000022721	HELQ (ENSSTUG00000022736)	hpse (ENSSTUG00000022800) ##22	ENSSTUG00000022830	btc (ENSSTUG00000022834)	amacr (ENSSTUG00000022855)	slc45a2 (ENSSTUG00000023049)	rxfp3 (ENSSTUG00000023067)	rai14 (ENSSTUG00000023082)	fgf10a (ENSSTUG00000023127)	nnt (ENSSTUG00000023200)	ENSSTUG00000025473	ENSSTUG00000025499	atp5mea (ENSSTUG00000025535)	PDE6B (ENSSTUG00000025771)	rbp4l (ENSSTUG00000035592)	slc26a1 (ENSSTUG00000035599)	zgc:86764 (ENSSTUG00000035618)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000068795	myo5b (ENSSSAG00000069046)	ENSSSAG00000105075	ENSSSAG00000009350	lmbrd2b (ENSSSAG00000070502)	ENSSSAG00000092956	ppp1r3b (ENSSSAG00000071303)	thex1 (ENSSSAG00000094462)	ENSSSAG00000071317	ENSSSAG00000071322	nkx6.1 (ENSSSAG00000120093)	gpat3 (ENSSSAG00000071359)	ccd98 (ENSSSAG00000072520)	ENSSSAG00000072522	HELQ (ENSSSAG00000072527)	hpse (ENSSSAG00000072530) ##22	btc (ENSSSAG00000072537)	ENSSSAG00000110559	slc45a2 (ENSSSAG00000072541)	rxfp3 (ENSSSAG00000072545)	rai14 (ENSSSAG00000072556)	fgf10a (ENSSSAG00000072596)	nnt (ENSSSAG00000072639)	ENSSSAG00000090561	fyb (ENSSSAG00000074513)	ENSSSAG00000074520	ENSSSAG00000005497	ENSSSAG00000115860	ENSSSAG00000117233	slc26a1 (ENSSSAG00000075145)	zgc:86764 (ENSSSAG00000075150)
Salmoninae	ANCESTRAL SPECIES	289	ENSGT01030000234908.d	ENSGT00940000156466.tb.b	ENSGT00390000018651.a.f	ENSGT00940000159475.c.i	ENSGT00530000063205.B.k	ENSGT00940000158928.n	ENSGT00950000183010.a.a.b.d	ENSGT00940000160897.m	ENSGT01030000234574.B.c.b.a.a.a.h	ENSGT00530000063424.b.q	ENSGT00940000157350.h	ENSGT00390000004874.a.b.i ##22	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350.g	ENSGT00390000004874.a.b.j ##22	ENSGT00940000163023	ENSGT00940000160508.c	ENSGT00940000157215.r.a	ENSGT00950000182914.a.b	ENSGT01030000234534.B.a.a.a.b.a	ENSGT00940000161886	ENSGT00940000157400.e	ENSGT00940000158907.c.c	ENSGT00390000004624.a.a.b	ENSGT00530000063460.A.b.k.a	ENSGT00390000005102.dd.a	ENSGT00940000156471.a.e	ENSGT00510000047107.B.c.d	ENSGT01100000263544.c.a.a.b.g	ENSGT00390000009453.gb.c
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b.g	ENSGT01030000234908.d	ENSGT00940000156466.tb.b	ENSGT00390000018651.a.f	ENSGT00940000159475.c.i	ENSGT00530000063205.B.k	ENSGT00940000158928.n	ENSGT00950000183010.a.a.b.d	ENSGT00940000160897.m	ENSGT01030000234574.B.c.b.a.a.a.h	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350.g	ENSGT00390000004874.a.b.j ##22	ENSGT00940000163023	ENSGT00940000160508.c	ENSGT00940000157215.r.a	ENSGT00950000182914.a.b.c	ENSGT01030000234534.B.a.a.a.b.a	ENSGT00940000161886	ENSGT00940000157400.e	ENSGT00940000158907.c.c	ENSGT00390000004624.a.a.b	ENSGT00530000063460.A.b.k.a	ENSGT00390000005102.dd.a	ENSGT00940000156471.a.e	ENSGT00510000047107.B.c.d	ENSGT01100000263544.c.a.a.b.g	ENSGT00390000009453.gb.c
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b.g	ENSGT01030000234908.d	ENSGT00940000156466.tb.b	ENSGT00390000018651.a.f	ENSGT00940000159475.c.i	ENSGT00530000063205.B.k	ENSGT00940000158928.n	ENSGT00950000183010.a.a.b.d	ENSGT00940000160897.m	ENSGT01030000234574.B.c.b.a.a.a.h	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350.g	ENSGT00390000004874.a.b.j ##22	ENSGT00940000163023	ENSGT00940000160508.c	ENSGT00940000157215.r.a	ENSGT00950000182914.a.b.c	ENSGT01030000234534.B.a.a.a.b.a	ENSGT00940000161886	ENSGT00940000157400.e	ENSGT00940000158907.c.c	ENSGT00390000004624.a.a.b	ENSGT00530000063460.A.b.k.a	ENSGT00390000005102.dd.a	ENSGT00940000156471.a.e	ENSGT00510000047107.B.c.d	ENSGT01100000263544.c.a.a.b.g	ENSGT00390000009453.gb.c
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b.g	ENSGT01030000234908.d	ENSGT00940000156466.tb.b	ENSGT00390000018651.a.f	ENSGT00940000159475.c.i	ENSGT00530000063205.B.k	ENSGT00940000158928.n	ENSGT00950000183010.a.a.b.d	ENSGT00940000160897.m	ENSGT01030000234574.B.c.b.a.a.a.h	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350.g	ENSGT00390000004874.a.b.j ##22	ENSGT00940000163023	ENSGT00940000160508.c	ENSGT00940000157215.r.a	ENSGT00950000182914.a.b.c	ENSGT01030000234534.B.a.a.a.b.a	ENSGT00940000161886	ENSGT00940000157400.e	ENSGT00940000158907.c.c	ENSGT00390000004624.a.a.b	ENSGT00530000063460.A.b.k.a	ENSGT00390000005102.dd.a	ENSGT00940000156471.a.e	ENSGT01100000263544.c.a.a.b.g	ENSGT00390000009453.gb.c	ENSGT00940000155983.a.b.d
Coho salmon	MODERN SPECIES	15	ENSOKIG00005019847	cfap53 (ENSOKIG00005019831)	myo5b (ENSOKIG00005019261)	ENSOKIG00005019223	capslb (ENSOKIG00005019214)	lmbrd2b (ENSOKIG00005019146)	ppp1r3b (ENSOKIG00005019138)	eri1 (ENSOKIG00005019126)	MFHAS1 (ENSOKIG00005019122)	rpl17 (ENSOKIG00005019091)	nkx6.1 (ENSOKIG00005019070)	gpat3 (ENSOKIG00005017803)	abraxas1 (ENSOKIG00005017677)	mrps18c (ENSOKIG00005017640)	HELQ (ENSOKIG00005017573)	hpse (ENSOKIG00005017529) ##22	ENSOKIG00005017508	btc (ENSOKIG00005017498)	ENSOKIG00005017494	amacr (ENSOKIG00005017487)	slc45a2 (ENSOKIG00005017471)	rxfp3 (ENSOKIG00005017461)	GZMK (ENSOKIG00005017449)	rai14 (ENSOKIG00005017420)	fgf10a (ENSOKIG00005017413)	ENSOKIG00005017395	ENSOKIG00005017377	atp5mea (ENSOKIG00005017367)	PDE6B (ENSOKIG00005016225)	slc26a1 (ENSOKIG00005016135)	zgc:86764 (ENSOKIG00005016113)
Chinook salmon	MODERN SPECIES	12	cfap53 (ENSOTSG00005043016)	myo5b (ENSOTSG00005043022)	ENSOTSG00005043311	capslb (ENSOTSG00005043312)	lmbrd2b (ENSOTSG00005043316)	ppp1r3b (ENSOTSG00005043348)	eri1 (ENSOTSG00005043349)	MFHAS1 (ENSOTSG00005043350)	rpl17 (ENSOTSG00005043351)	nkx6.1 (ENSOTSG00005043355)	ENSOTSG00005043356	gpat3 (ENSOTSG00005043359)	abraxas1 (ENSOTSG00005043362)	mrps18c (ENSOTSG00005043363)	HELQ (ENSOTSG00005043364)	hpse (ENSOTSG00005043369) ##22	MYL5 (ENSOTSG00005043370)	btc (ENSOTSG00005001650)	amacr (ENSOTSG00005001682)	slc45a2 (ENSOTSG00005001683)	rxfp3 (ENSOTSG00005001686)	GZMK (ENSOTSG00005001687)	rai14 (ENSOTSG00005001692)	fgf10a (ENSOTSG00005001695)	ENSOTSG00005001698	SBK1 (ENSOTSG00005001701)	ENSOTSG00005001708	rhot2 (ENSOTSG00005001712)	h1-0 (ENSOTSG00005001715)	rhbdl1 (ENSOTSG00005001719)	ENSOTSG00005001722
Rainbow trout	MODERN SPECIES	26	cfap53 (ENSOMYG00000029500)	ENSOMYG00000066204	myo5b (ENSOMYG00000031585)	ENSOMYG00000041305	capslb (ENSOMYG00000041310)	lmbrd2b (ENSOMYG00000041315)	ppp1r3b (ENSOMYG00000067363)	ENSOMYG00000041352	ENSOMYG00000041361	rl17 (ENSOMYG00000041369)	nkx6.1 (ENSOMYG00000041392)	gpat3 (ENSOMYG00000041467)	abraxas1 (ENSOMYG00000042010)	mrps18c (ENSOMYG00000042029)	HELQ (ENSOMYG00000042051)	hpse (ENSOMYG00000042123) ##22	ENSOMYG00000042145	btc (ENSOMYG00000042158)	amacr (ENSOMYG00000042167)	slc45a2 (ENSOMYG00000042183)	rxfp3 (ENSOMYG00000042189)	ENSOMYG00000042197	rai14 (ENSOMYG00000042219)	fgf10a (ENSOMYG00000042238)	ENSOMYG00000042245	ENSOMYG00000042253	atp5mea (ENSOMYG00000042263)	ENSOMYG00000042355	rbp4l (ENSOMYG00000042893)	slc26a1 (ENSOMYG00000042906)	zgc:86764 (ENSOMYG00000042914)
Salmo	ANCESTRAL SPECIES	54	ENSGT00390000002096.s.a	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b.g	ENSGT01030000234908.d	ENSGT00390000018651.a.f	ENSGT00940000159475.c.i	ENSGT00530000063205.B.k	ENSGT00940000158928.n	ENSGT00950000183010.a.a.b.d	ENSGT00940000160897.m	ENSGT01030000234574.B.c.b.a.a.a.h	ENSGT00530000063424.b.r	ENSGT00940000165965	ENSGT00940000157350.g	ENSGT00390000004874.a.b.j ##22	ENSGT00940000160508.c	ENSGT00940000157215.r.a	ENSGT00950000182914.a.b.c	ENSGT01030000234534.B.a.a.a.b.a	ENSGT00940000161886	ENSGT00940000157400.e	ENSGT00940000158907.c.c	ENSGT00390000004624.a.a.b	ENSGT00530000063460.A.b.k.a	ENSGT00390000005102.dd.a	ENSGT00940000156471.a.e	ENSGT00510000047107.B.c.d	ENSGT01100000263544.c.a.a.b.g	ENSGT00390000009453.gb.c	ENSGT00940000155983.a.b.d
River trout	MODERN SPECIES	15	cfap53 (ENSSTUG00000037964)	myo5b (ENSSTUG00000036648)	ENSSTUG00000036607	ENSSTUG00000036602	capslb (ENSSTUG00000036581)	lmbrd2b (ENSSTUG00000036178)	ppp1r3b (ENSSTUG00000036162)	eri1 (ENSSTUG00000036149)	MFHAS1 (ENSSTUG00000036145)	rpl17 (ENSSTUG00000036118)	nkx6.1 (ENSSTUG00000036099)	gpat3 (ENSSTUG00000035876)	abraxas1 (ENSSTUG00000035844)	mrps18c (ENSSTUG00000035834)	HELQ (ENSSTUG00000035510)	hpse (ENSSTUG00000035477) ##22	btc (ENSSTUG00000035464)	amacr (ENSSTUG00000035448)	slc45a2 (ENSSTUG00000035439)	rxfp3 (ENSSTUG00000035429)	GZMK (ENSSTUG00000035421)	rai14 (ENSSTUG00000035373)	fgf10a (ENSSTUG00000035358)	nnt (ENSSTUG00000035331)	ENSSTUG00000035294	atp5mea (ENSSTUG00000035287)	PDE6B (ENSSTUG00000046964)	rbp4l (ENSSTUG00000046948)	slc26a1 (ENSSTUG00000046942)	zgc:86764 (ENSSTUG00000046902)	ENSSTUG00000046888
Atlantic salmon	MODERN SPECIES		ENSSSAG00000068165	ENSSSAG00000068114	cfap53 (ENSSSAG00000068107)	myo5b (ENSSSAG00000009979)	ENSSSAG00000009360	lmbrd2b (ENSSSAG00000007614)	ppp1r3b (ENSSSAG00000117668)	ENSSSAG00000007591	ENSSSAG00000007587	ENSSSAG00000007561	nkx6.1 (ENSSSAG00000007552)	gpat3 (ENSSSAG00000006983)	abraxas1 (ENSSSAG00000007539)	mrps18c (ENSSSAG00000006936)	HELQ (ENSSSAG00000006930)	hpse (ENSSSAG00000006915) ##22	btc (ENSSSAG00000006911)	amacr (ENSSSAG00000101933)	slc45a2 (ENSSSAG00000006897)	rxfp3 (ENSSSAG00000006884)	ENSSSAG00000006878	rai14 (ENSSSAG00000006855)	fgf10a (ENSSSAG00000087289)	nnt (ENSSSAG00000006834)	ENSSSAG00000006821	atp5mea (ENSSSAG00000006812)	ENSSSAG00000074539	rbp4l (ENSSSAG00000005370)	slc26a1 (ENSSSAG00000098190)	zgc:86764 (ENSSSAG00000005322)	ENSSSAG00000115507
Huchen	MODERN SPECIES	183			ENSHHUG00000009408	ENSHHUG00000009402	ENSHHUG00000009374	ENSHHUG00000009322	ENSHHUG00000009131	gga3a (ENSHHUG00000009045)	grb2a (ENSHHUG00000009004)	MCHR1 (ENSHHUG00000008997)	usp43a (ENSHHUG00000008981)	gpat3 (ENSHHUG00000008766)	ENSHHUG00000008753	mrps18c (ENSHHUG00000008738)	HELQ (ENSHHUG00000008709)	hpse (ENSHHUG00000008648) ##22	btc (ENSHHUG00000008637)	amacr (ENSHHUG00000008634)	slc45a2 (ENSHHUG00000008628)	RXFP3 (ENSHHUG00000008624)	ENSHHUG00000008619	rai14 (ENSHHUG00000008594)	fgf10a (ENSHHUG00000008578)	nnt (ENSHHUG00000008512)	ENSHHUG00000008505	ENSHHUG00000008429	atp5mea (ENSHHUG00000008416)	PDE6B (ENSHHUG00000007249)	rbp4l (ENSHHUG00000007180)	slc26a1 (ENSHHUG00000007171)	zgc:86764 (ENSHHUG00000007110)
Osteoglossiformes	ANCESTRAL SPECIES	53	ENSGT00510000047107.B	ENSGT01100000263544.c.a.a.b	ENSGT00390000009453.gb	ENSGT00940000155983.a.b	ENSGT00940000159066	ENSGT00940000156161.B	ENSGT00940000159475.c	ENSGT00530000063205.B	ENSGT00940000158928	ENSGT00950000183010.a.a.b	ENSGT00940000160897	ENSGT01030000234574.B.c.b.a.a.a	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b ##22	ENSGT00940000163023	ENSGT00940000160508	ENSGT00940000157215	ENSGT00950000182914.a.b	ENSGT01030000234518.B.a.a	ENSGT01030000234551.i	ENSGT00910000144271.C	ENSGT00940000157400	ENSGT00940000158907	ENSGT00390000004624.a.a	ENSGT00940000153432.B	ENSGT00940000166240	ENSGT00530000063460.A.b	ENSGT00390000002096	ENSGT00940000165259.a
P. kingsleyae	MODERN SPECIES	9	PDE6B (ENSPKIG00000022117)	slc26a1 (ENSPKIG00000022094)	zgc:86764 (ENSPKIG00000022057)	ENSPKIG00000022021	dusp4 (ENSPKIG00000021994)	tnksb (ENSPKIG00000021889)	ppp1r3b (ENSPKIG00000021852)	eri1 (ENSPKIG00000021836)	MFHAS1 (ENSPKIG00000021824)	rpl17 (ENSPKIG00000021790)	nkx6.1 (ENSPKIG00000021776)	gpat3 (ENSPKIG00000021754)	abraxas1 (ENSPKIG00000021725)	mrps18c (ENSPKIG00000021736)	HELQ (ENSPKIG00000021702)	hpse (ENSPKIG00000021681) ##22	MYL5 (ENSPKIG00000020953)	btc (ENSPKIG00000020696)	amacr (ENSPKIG00000020682)	slc45a2 (ENSPKIG00000020666)	rxfp3 (ENSPKIG00000020655)	ENSPKIG00000020640	rai14 (ENSPKIG00000020593)	fgf10b (ENSPKIG00000020575)	nnt (ENSPKIG00000020489)	paip1 (ENSPKIG00000020456)	ENSPKIG00000020440	ENSPKIG00000020394	ENSPKIG00000020272	ENSPKIG00000020146	cfap53 (ENSPKIG00000020233)
Asian bonytongue	MODERN SPECIES	21	rbp4l (ENSSFOG00015018987)	slc26a1 (ENSSFOG00015033212)	zgc:86764 (ENSSFOG00015019069)	ENSSFOG00015019096	dusp4 (ENSSFOG00015019120)	tnksb (ENSSFOG00015019144)	ppp1r3b (ENSSFOG00015031266)	eri1 (ENSSFOG00015031603)	MFHAS1 (ENSSFOG00015019302)	rpl17 (ENSSFOG00015019318)	nkx6.1 (ENSSFOG00015019392)	agpat9l (ENSSFOG00015019403)	abraxas1 (ENSSFOG00015019434)	mrps18c (ENSSFOG00015032365)	HELQ (ENSSFOG00015019460)	hpse (ENSSFOG00015019513) ##22	MYL5 (ENSSFOG00015019520)	btc (ENSSFOG00015019539)	amacr (ENSSFOG00015019554)	slc45a2 (ENSSFOG00015019563)	RXFP3 (ENSSFOG00015030645)	ENSSFOG00015019596	rai14 (ENSSFOG00015019611)	fgf10b (ENSSFOG00015030737)	nnt (ENSSFOG00015019697)	paip1 (ENSSFOG00015019741)	ENSSFOG00015019782	ENSSFOG00015019801	ENSSFOG00015032651	cfap53 (ENSSFOG00015019852)	cfap53 (ENSSFOG00015019875)
Spotted gar	MODERN SPECIES	658	IDUA (ENSLOCG00000012221)	ENSLOCG00000012217	ENSLOCG00000012209	dusp4 (ENSLOCG00000012199)	tnksb (ENSLOCG00000012168)	ppp1r3b (ENSLOCG00000017547)	eri1 (ENSLOCG00000012161)	MFHAS1 (ENSLOCG00000012154)	rpl17 (ENSLOCG00000012148)	nkx6.1 (ENSLOCG00000012142)	GPAT3 (ENSLOCG00000012133)	abraxas1 (ENSLOCG00000012124)	mrps18c (ENSLOCG00000012115)	HELQ (ENSLOCG00000012099)	MYL5 (ENSLOCG00000012090)	hpse (ENSLOCG00000012076) ##22	btc (ENSLOCG00000012070)	ENSLOCG00000012063	EREG (ENSLOCG00000012059)	EPGN (ENSLOCG00000012056)	mthfd2l (ENSLOCG00000012052)	ptpn13 (ENSLOCG00000012036)	mapk10 (ENSLOCG00000012028)	ARHGAP24 (ENSLOCG00000012018)	esm1 (ENSLOCG00000012017)	ENSLOCG00000011999	ENSLOCG00000011989	hint2 (ENSLOCG00000011981)	mrps30 (ENSLOCG00000011976)	HCN1 (ENSLOCG00000011966)	EMB (ENSLOCG00000011959)
Reedfish	MODERN SPECIES	15	SMAD2 (ENSECRG00000007967)	ZBTB7C (ENSECRG00000007988)	ENSECRG00000008006	CTIF (ENSECRG00000008014)	smad7 (ENSECRG00000008025)	DYM (ENSECRG00000008045)	C18orf32 (ENSECRG00000008179)	rpl17 (ENSECRG00000008193)	nkx6.1 (ENSECRG00000008236)	cycsb (ENSECRG00000008271)	GPAT3 (ENSECRG00000008282)	abraxas1 (ENSECRG00000008293)	ENSECRG00000008308	mrps18c (ENSECRG00000008321)	HELQ (ENSECRG00000008340)	hpse (ENSECRG00000008394) ##22	ENSECRG00000008477	TRABD2A (ENSECRG00000008488)	HOOK3 (ENSECRG00000008508)	rnf170 (ENSECRG00000008551)	june (ENSECRG00000008557)	THAP1 (ENSECRG00000008562)	MOB3B (ENSECRG00000008569)	ENSECRG00000008586	TEK (ENSECRG00000008636)	IFT74 (ENSECRG00000008683)	LRRC19 (ENSECRG00000008842)	FSD1L (ENSECRG00000008854)	fktn (ENSECRG00000008871)	tal2 (ENSECRG00000008880)	TMEM38B (ENSECRG00000008888)
Elephant shark	MODERN SPECIES	1678	dkk2 (ENSCMIG00000013175)	papss1 (ENSCMIG00000013272)	sgms2b (ENSCMIG00000013466)	ENSCMIG00000013474	IDUA (ENSCMIG00000013490)	slc26a1 (ENSCMIG00000013495)	rbp4l (ENSCMIG00000013498)	ENSCMIG00000013507	ENSCMIG00000013516	MYL5 (ENSCMIG00000013521)	nkx6.1 (ENSCMIG00000013524)	ENSCMIG00000013530	ENSCMIG00000013533	ENSCMIG00000013536	HELQ (ENSCMIG00000013556)	hpse (ENSCMIG00000013622) ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000004874.a.b ##22
Hagfish	MODERN SPECIES	1373														ENSEBUG00000013073	ENSEBUG00000016527	ENSEBUG00000009734 ##22	NAA80 (ENSEBUG00000006165)	ENSEBUG00000011531	praf2 (ENSEBUG00000001867)	ENSEBUG00000010826 #22	ENSEBUG00000015958	ENSEBUG00000011147	qdprb.1 (ENSEBUG00000007458)	ENSEBUG00000003569	STK32B (ENSEBUG00000001295)	ENSEBUG00000000671	ENSEBUG00000013048	ENSEBUG00000010111	ENSEBUG00000003213	ENSEBUG00000000517
Ciona	ANCESTRAL SPECIES																	ENSGT00390000004874.a.b ##22
Ciona savignyi	MODERN SPECIES	91	ENSCSAVG00000002518	ENSCSAVG00000002586	ENSCSAVG00000002597	ENSCSAVG00000002603	ENSCSAVG00000002764	ENSCSAVG00000002770	ENSCSAVG00000002772	ENSCSAVG00000002775	ENSCSAVG00000002913	ENSCSAVG00000002923	ENSCSAVG00000002926	ENSCSAVG00000002929	ENSCSAVG00000002932	ENSCSAVG00000002934	ENSCSAVG00000002938	ENSCSAVG00000002987 ##22	ENSCSAVG00000002999	ENSCSAVG00000003096	ENSCSAVG00000003099	ENSCSAVG00000003100	ENSCSAVG00000003105	ENSCSAVG00000003110	ENSCSAVG00000003114	ENSCSAVG00000003122	ENSCSAVG00000003125	ENSCSAVG00000003132	ENSCSAVG00000003134	ENSCSAVG00000003150	ENSCSAVG00000003156	ENSCSAVG00000003534	ENSCSAVG00000003543