Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319 #8	ENSGT00940000153299.c.b.a.b	ENSGT00940000157847 #13	ENSGT00530000063168.a.a.b #15	ENSGT00940000160145.b #16	ENSGT00390000012692.i #17	ENSGT00940000159438 #18	ENSGT00940000155877 #19	ENSGT00940000161795 #20	ENSGT00940000162763	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063 #24	ENSGT00940000162993 #25	ENSGT00950000183031.B.e.a #26	ENSGT00940000161062 #27	ENSGT00940000162603 #28	ENSGT00390000004891 #30	ENSGT00950000182925.D.a.a.b.b ##33	ENSGT00950000182925.D.a.b.a.a.a.b #33	ENSGT00950000182925.D.a.b.a.a.a.a.e #34	ENSGT00940000158517 #36	ENSGT00390000001432 #37	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000014785	ENSGT00940000159316
Caprinae	ANCESTRAL SPECIES	40	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319 #8	ENSGT00940000153299.c.b.a.b	ENSGT00940000157847 #13	ENSGT00530000063168.a.a.b #15	ENSGT00940000160145.b #16	ENSGT00390000012692.i #17	ENSGT00940000159438 #18	ENSGT00940000155877 #19	ENSGT00940000161795 #20	ENSGT00940000162763	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063 #24	ENSGT00940000162993 #25	ENSGT00950000183031.B.e.a #26	ENSGT00940000161062 #27	ENSGT00940000162603 #28	ENSGT00390000004891 #30	ENSGT00940000167970.a.b #31
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020009018 #7	HUWE1 (ENSOARG00020006767) #8	ENSOARG00020006494 #9	ENSOARG00020006481 #10	ENSOARG00020006463 #11	ENSOARG00020006441 #12	PHF8 (ENSOARG00020024344) #13	ENSOARG00020024314 #14	WNK3 (ENSOARG00020024240) #15	WNK3 (ENSOARG00020024139) #16	TSR2 (ENSOARG00020024077) #17	FGD1 (ENSOARG00020024044) #18	ENSOARG00020024031 #19	MAGED2 (ENSOARG00020023984) #20	PFKFB1 (ENSOARG00020023816) #21	APEX2 (ENSOARG00020023778) #22	ALAS2 (ENSOARG00020023746) #23	MAGEH1 (ENSOARG00020023703) #24	FOXR2 (ENSOARG00020023670) #25	RRAGB (ENSOARG00020023609) #26	KLF8 (ENSOARG00020023543) #27	UBQLN2 (ENSOARG00020023528) #28	ENSOARG00020023517 #29	NBDY (ENSOARG00020023507) #30	ENSOARG00020023498 #31	ENSOARG00020023480 #32	ENSOARG00020023465 #33	ENSOARG00020023450 #34	ENSOARG00020023439 #35	HEPH (ENSOARG00020023252) #36	VSIG4 (ENSOARG00020023216) #37
Goat	MODERN SPECIES	29	ENSCHIG00000026014	ENSCHIG00000017570	ENSCHIG00000022374	NDP (ENSCHIG00000013603)	ENSCHIG00000025084	EFHC2 (ENSCHIG00000005059)	FUNDC1 (ENSCHIG00000019943)	ENSCHIG00000011225	DIPK2B (ENSCHIG00000014928)	KDM6A (ENSCHIG00000026240)	ENSCHIG00000015092	ENSCHIG00000011583	ENSCHIG00000021372	ENSCHIG00000015519	PFKFB1 (ENSCHIG00000023388) #21	APEX2 (ENSCHIG00000019916) #22	ALAS2 (ENSCHIG00000011854) #23	RRAGB (ENSCHIG00000018786) #26	KLF8 (ENSCHIG00000011453) #27	ENSCHIG00000009409	NBDY (ENSCHIG00000012160) #30	ENSCHIG00000011936 #31	ENSCHIG00000007597 #33	WNK3 (ENSCHIG00000001939) #16	FAM120C (ENSCHIG00000014638) #15	ENSCHIG00000019840	HUWE1 (ENSCHIG00000020699) #8	HSD17B10 (ENSCHIG00000017468)	RIBC1 (ENSCHIG00000014380)	ENSCHIG00000025979	SMC1A (ENSCHIG00000008648)
Bovinae	ANCESTRAL SPECIES	32	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319 #8	ENSGT00940000153299.c.b.a.b	ENSGT00940000157847 #13	ENSGT00530000063168.a.a.b #15	ENSGT00940000160145.b #16	ENSGT00390000012692.i #17	ENSGT00940000159438 #18	ENSGT00940000155877 #19	ENSGT00940000161795 #20	ENSGT00940000162763	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063 #24	ENSGT00940000162993 #25	ENSGT00950000183031.B.e.a #26	ENSGT00940000161062 #27	ENSGT00940000162603 #28	ENSGT00390000004891 #30	ENSGT00950000182925.D.a.a.b.b ##33	ENSGT00950000182925.D.a.b.a.a.a.b #33	ENSGT00950000182925.D.a.b.a.a.a.a.e #34	ENSGT00940000158517 #36	ENSGT00390000001432 #37	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000014785	ENSGT00940000159316
Bos	ANCESTRAL SPECIES	30	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319 #8	ENSGT00940000153299.c.b.a.b	ENSGT00940000157847 #13	ENSGT00530000063168.a.a.b #15	ENSGT00940000160145.b #16	ENSGT00390000012692.i #17	ENSGT00940000159438 #18	ENSGT00940000155877 #19	ENSGT00940000161795 #20	ENSGT00940000162763	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063 #24	ENSGT00940000162993 #25	ENSGT00950000183031.B.e.a #26	ENSGT00940000161062 #27	ENSGT00940000162603 #28	ENSGT00390000004891 #30
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319 #8	ENSGT00940000153299.c.b.a.b	ENSGT00940000157847 #13	ENSGT00530000063168.a.a.b #15	ENSGT00940000160145.b #16	ENSGT00390000012692.i #17	ENSGT00940000159438 #18	ENSGT00940000155877 #19	ENSGT00940000161795 #20	ENSGT00940000162763	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063 #24	ENSGT00940000162993 #25	ENSGT00950000183031.B.e.a #26	ENSGT00940000161062 #27	ENSGT00940000162603 #28	ENSGT00390000004891 #30	ENSGT01090000260200	ENSGT00950000182925.D.a.a.b.b ##33	ENSGT00950000182925.D.a.b.a.a.a.b #33	ENSGT00950000182925.D.a.b.a.a.a.a.e #34	ENSGT00950000182925.D.a.b.a.a.a.a.f ##33	ENSGT00940000165111.b	ENSGT00940000158517 #36	ENSGT00390000001432 #37
Wild yak	MODERN SPECIES	655																APEX2 (ENSBMUG00000026249) #22	ALAS2 (ENSBMUG00000026246) #23
Domestic yak	MODERN SPECIES	69	HUWE1 (ENSBGRG00000026013) #8	ENSBGRG00000026042	PHF8 (ENSBGRG00000026049) #13	ENSBGRG00000026075 #15	ENSBGRG00000026084 #15	WNK3 (ENSBGRG00000026090) #16	ENSBGRG00000026097 #17	FGD1 (ENSBGRG00000026106) #18	ENSBGRG00000026149	GNL3L (ENSBGRG00000026157) #19	ENSBGRG00000026166	MAGED2 (ENSBGRG00000026168) #20	ENSBGRG00000026172	PFKFB1 (ENSBGRG00000007193) #21	ENSBGRG00000007503	APEX2 (ENSBGRG00000007525) #22	ALAS2 (ENSBGRG00000007653) #23	ENSBGRG00000007858	ENSBGRG00000007909	MAGEH1 (ENSBGRG00000007940) #24	FOXR2 (ENSBGRG00000007965) #25	RRAGB (ENSBGRG00000008042) #26	ENSBGRG00000008268	KLF8 (ENSBGRG00000008297) #27	UBQLN2 (ENSBGRG00000008416) #28	NBDY (ENSBGRG00000008427) #30	ENSBGRG00000008442	ENSBGRG00000008462	ENSBGRG00000008488 ##33	ENSBGRG00000008507 #33	ENSBGRG00000008521 #34
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319 #8	ENSGT00940000153299.c.b.a.b	ENSGT00940000157847 #13	ENSGT00530000063168.a.a.b #15	ENSGT00940000160145.b #16	ENSGT00390000012692.i #17	ENSGT00940000159438 #18	ENSGT00940000156786.l	ENSGT00940000155877 #19	ENSGT00940000161795 #20	ENSGT00940000162763	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063 #24	ENSGT00940000162993 #25	ENSGT00950000183031.B.e.a #26	ENSGT00940000161062 #27	ENSGT00940000162603 #28	ENSGT00390000004891 #30	ENSGT00950000182925.D.a.a.b.b ##33	ENSGT00950000182925.D.a.b.a.a.a.b #33	ENSGT00950000182925.D.a.b.a.a.a.a.e #34	ENSGT00950000182925.D.a.b.a.a.a.a.f ##33	ENSGT00940000165111.b	ENSGT00940000158517 #36	ENSGT00390000001432 #37	ENSGT01090000260082.d.a.a.a.a
Cow	MODERN SPECIES	177	RIBC1 (ENSBTAG00000017769)	HSD17B10 (ENSBTAG00000017779)	HUWE1 (ENSBTAG00000006122) #8	ENSBTAG00000005098	PHF8 (ENSBTAG00000013289) #13	FAM120C (ENSBTAG00000003855) #15	WNK3 (ENSBTAG00000023182) #16	TSR2 (ENSBTAG00000015858) #17	FGD1 (ENSBTAG00000015860) #18	RAB21 (ENSBTAG00000019370)	GNL3L (ENSBTAG00000031564) #19	ENSBTAG00000049441	MAGED2 (ENSBTAG00000039888) #20	TRO (ENSBTAG00000051604)	PFKFB1 (ENSBTAG00000000172) #21	APEX2 (ENSBTAG00000013177) #22	ALAS2 (ENSBTAG00000013178) #23	MAGEH1 (ENSBTAG00000039090) #24	FOXR2 (ENSBTAG00000046659) #25	RRAGB (ENSBTAG00000012980) #26	KLF8 (ENSBTAG00000005852) #27	UBQLN2 (ENSBTAG00000021843) #28	NBDY (ENSBTAG00000054746) #30	ENSBTAG00000049019	ENSBTAG00000053877 ##33	SPIN2 (ENSBTAG00000013260) #33	SPIN2B (ENSBTAG00000046769) #34	SPIN2B (ENSBTAG00000038387) ##33	ENSBTAG00000045616	HEPH (ENSBTAG00000047416) #36	VSIG4 (ENSBTAG00000015769) #37
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005013304	PHF8 (ENSBIXG00005013537) #13	FAM120C (ENSBIXG00005013694) #15	ENSBIXG00005013719	WNK3 (ENSBIXG00005013750) #16	ENSBIXG00005001713 #17	FGD1 (ENSBIXG00005013811) #18	ENSBIXG00005013829	GNL3L (ENSBIXG00005001728) #19	ENSBIXG00005007315	MAGED2 (ENSBIXG00005014025) #20	ENSBIXG00005014063	ENSBIXG00005001826	ENSBIXG00005014077	PFKFB1 (ENSBIXG00005014145) #21	APEX2 (ENSBIXG00005014199) #22	ALAS2 (ENSBIXG00005014264) #23	MAGEH1 (ENSBIXG00005001884) #24	FOXR2 (ENSBIXG00005014322) #25	RRAGB (ENSBIXG00005014371) #26	KLF8 (ENSBIXG00005014469) #27	UBQLN2 (ENSBIXG00005014517) #28	NBDY (ENSBIXG00005014528) #30	ENSBIXG00005014533 ##33	ENSBIXG00005002025 #33	ENSBIXG00005014560 #34	ENSBIXG00005014564 ##33	ENSBIXG00005002029	ENSBIXG00005014584	HEPH (ENSBIXG00005014859) #36	ENSBIXG00005014906
American bison	MODERN SPECIES	2535																APEX2 (ENSBBBG00000016207) #22