Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000159667	ENSGT00940000155614 #36	ENSGT00390000010825.a #35	ENSGT00940000155170 #34	ENSGT00940000156319 #33	ENSGT00940000153299.c.b.a.b #32	ENSGT00940000157847	ENSGT00530000063168.a.a.b #31	ENSGT00940000160145.b #30	ENSGT00390000012692.i	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000161795	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #24	ENSGT00940000161062 #25	ENSGT00940000162603	ENSGT00390000004891 #27	ENSGT00950000182925.D.a.a.b.b ##29	ENSGT00950000182925.D.a.b.a.a.a.b #29	ENSGT00950000182925.D.a.b.a.a.a.a.e ##29	ENSGT00940000158517	ENSGT00390000001432	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000014785	ENSGT00940000159316
Caprinae	ANCESTRAL SPECIES	40	ENSGT00940000159667	ENSGT00940000155614 #36	ENSGT00390000010825.a #35	ENSGT00940000155170 #34	ENSGT00940000156319 #33	ENSGT00940000153299.c.b.a.b #32	ENSGT00940000157847	ENSGT00530000063168.a.a.b #31	ENSGT00940000160145.b #30	ENSGT00390000012692.i	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000161795	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #24	ENSGT00940000161062 #25	ENSGT00940000162603	ENSGT00390000004891 #27	ENSGT00940000167970.a.b #28
Goat	MODERN SPECIES	29	ENSCHIG00000026014 #7	ENSCHIG00000017570 #8	ENSCHIG00000022374 #9	NDP (ENSCHIG00000013603) #10	ENSCHIG00000025084 #11	EFHC2 (ENSCHIG00000005059) #12	FUNDC1 (ENSCHIG00000019943) #13	ENSCHIG00000011225 #14	DIPK2B (ENSCHIG00000014928) #15	KDM6A (ENSCHIG00000026240) #16	ENSCHIG00000015092 #17	ENSCHIG00000011583 #18	ENSCHIG00000021372 #19	ENSCHIG00000015519 #20	PFKFB1 (ENSCHIG00000023388) #21	APEX2 (ENSCHIG00000019916) #22	ALAS2 (ENSCHIG00000011854) #23	RRAGB (ENSCHIG00000018786) #24	KLF8 (ENSCHIG00000011453) #25	ENSCHIG00000009409 #26	NBDY (ENSCHIG00000012160) #27	ENSCHIG00000011936 #28	ENSCHIG00000007597 #29	WNK3 (ENSCHIG00000001939) #30	FAM120C (ENSCHIG00000014638) #31	ENSCHIG00000019840 #32	HUWE1 (ENSCHIG00000020699) #33	HSD17B10 (ENSCHIG00000017468) #34	RIBC1 (ENSCHIG00000014380) #35	ENSCHIG00000025979 #36	SMC1A (ENSCHIG00000008648) #37
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020009018	HUWE1 (ENSOARG00020006767) #33	ENSOARG00020006494	ENSOARG00020006481	ENSOARG00020006463	ENSOARG00020006441	PHF8 (ENSOARG00020024344)	ENSOARG00020024314	WNK3 (ENSOARG00020024240) #31	WNK3 (ENSOARG00020024139) #30	TSR2 (ENSOARG00020024077)	FGD1 (ENSOARG00020024044)	ENSOARG00020024031	MAGED2 (ENSOARG00020023984)	PFKFB1 (ENSOARG00020023816) #21	APEX2 (ENSOARG00020023778) #22	ALAS2 (ENSOARG00020023746) #23	MAGEH1 (ENSOARG00020023703)	FOXR2 (ENSOARG00020023670)	RRAGB (ENSOARG00020023609) #24	KLF8 (ENSOARG00020023543) #25	UBQLN2 (ENSOARG00020023528)	ENSOARG00020023517	NBDY (ENSOARG00020023507) #27	ENSOARG00020023498 #28	ENSOARG00020023480	ENSOARG00020023465 #29	ENSOARG00020023450 ##29	ENSOARG00020023439 ##29	HEPH (ENSOARG00020023252)	VSIG4 (ENSOARG00020023216)
Bovinae	ANCESTRAL SPECIES	32	ENSGT00940000159667	ENSGT00940000155614 #36	ENSGT00390000010825.a #35	ENSGT00940000155170 #34	ENSGT00940000156319 #33	ENSGT00940000153299.c.b.a.b #32	ENSGT00940000157847	ENSGT00530000063168.a.a.b #31	ENSGT00940000160145.b #30	ENSGT00390000012692.i	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000161795	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #24	ENSGT00940000161062 #25	ENSGT00940000162603	ENSGT00390000004891 #27	ENSGT00950000182925.D.a.a.b.b ##29	ENSGT00950000182925.D.a.b.a.a.a.b #29	ENSGT00950000182925.D.a.b.a.a.a.a.e ##29	ENSGT00940000158517	ENSGT00390000001432	ENSGT01090000260082.d.a.a.a.a	ENSGT00390000014785	ENSGT00940000159316
Bos	ANCESTRAL SPECIES	30	ENSGT00940000159667	ENSGT00940000155614 #36	ENSGT00390000010825.a #35	ENSGT00940000155170 #34	ENSGT00940000156319 #33	ENSGT00940000153299.c.b.a.b #32	ENSGT00940000157847	ENSGT00530000063168.a.a.b #31	ENSGT00940000160145.b #30	ENSGT00390000012692.i	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000161795	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #24	ENSGT00940000161062 #25	ENSGT00940000162603	ENSGT00390000004891 #27
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000159667	ENSGT00940000155614 #36	ENSGT00390000010825.a #35	ENSGT00940000155170 #34	ENSGT00940000156319 #33	ENSGT00940000153299.c.b.a.b #32	ENSGT00940000157847	ENSGT00530000063168.a.a.b #31	ENSGT00940000160145.b #30	ENSGT00390000012692.i	ENSGT00940000159438	ENSGT00940000155877	ENSGT00940000161795	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #24	ENSGT00940000161062 #25	ENSGT00940000162603	ENSGT00390000004891 #27	ENSGT01090000260200	ENSGT00950000182925.D.a.a.b.b ##29	ENSGT00950000182925.D.a.b.a.a.a.b #29	ENSGT00950000182925.D.a.b.a.a.a.a.e ##29	ENSGT00950000182925.D.a.b.a.a.a.a.f ##29	ENSGT00940000165111.b	ENSGT00940000158517	ENSGT00390000001432
Wild yak	MODERN SPECIES	655																APEX2 (ENSBMUG00000026249) #22	ALAS2 (ENSBMUG00000026246) #23
Domestic yak	MODERN SPECIES	69	HUWE1 (ENSBGRG00000026013) #33	ENSBGRG00000026042 #32	PHF8 (ENSBGRG00000026049)	ENSBGRG00000026075 #31	ENSBGRG00000026084 #31	WNK3 (ENSBGRG00000026090) #30	ENSBGRG00000026097	FGD1 (ENSBGRG00000026106)	ENSBGRG00000026149	GNL3L (ENSBGRG00000026157)	ENSBGRG00000026166	MAGED2 (ENSBGRG00000026168)	ENSBGRG00000026172 #20	PFKFB1 (ENSBGRG00000007193) #21	ENSBGRG00000007503	APEX2 (ENSBGRG00000007525) #22	ALAS2 (ENSBGRG00000007653) #23	ENSBGRG00000007858	ENSBGRG00000007909	MAGEH1 (ENSBGRG00000007940)	FOXR2 (ENSBGRG00000007965)	RRAGB (ENSBGRG00000008042) #24	ENSBGRG00000008268	KLF8 (ENSBGRG00000008297) #25	UBQLN2 (ENSBGRG00000008416)	NBDY (ENSBGRG00000008427) #27	ENSBGRG00000008442	ENSBGRG00000008462	ENSBGRG00000008488 ##29	ENSBGRG00000008507 #29	ENSBGRG00000008521 ##29
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000155614 #36	ENSGT00390000010825.a #35	ENSGT00940000155170 #34	ENSGT00940000156319 #33	ENSGT00940000153299.c.b.a.b #32	ENSGT00940000157847	ENSGT00530000063168.a.a.b #31	ENSGT00940000160145.b #30	ENSGT00390000012692.i	ENSGT00940000159438	ENSGT00940000156786.l	ENSGT00940000155877	ENSGT00940000161795	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #23	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #24	ENSGT00940000161062 #25	ENSGT00940000162603	ENSGT00390000004891 #27	ENSGT00950000182925.D.a.a.b.b ##29	ENSGT00950000182925.D.a.b.a.a.a.b #29	ENSGT00950000182925.D.a.b.a.a.a.a.e ##29	ENSGT00950000182925.D.a.b.a.a.a.a.f ##29	ENSGT00940000165111.b	ENSGT00940000158517	ENSGT00390000001432	ENSGT01090000260082.d.a.a.a.a
Cow	MODERN SPECIES	177	RIBC1 (ENSBTAG00000017769) #35	HSD17B10 (ENSBTAG00000017779) #34	HUWE1 (ENSBTAG00000006122) #33	ENSBTAG00000005098 #32	PHF8 (ENSBTAG00000013289)	FAM120C (ENSBTAG00000003855) #31	WNK3 (ENSBTAG00000023182) #30	TSR2 (ENSBTAG00000015858)	FGD1 (ENSBTAG00000015860)	RAB21 (ENSBTAG00000019370)	GNL3L (ENSBTAG00000031564)	ENSBTAG00000049441	MAGED2 (ENSBTAG00000039888)	TRO (ENSBTAG00000051604) #20	PFKFB1 (ENSBTAG00000000172) #21	APEX2 (ENSBTAG00000013177) #22	ALAS2 (ENSBTAG00000013178) #23	MAGEH1 (ENSBTAG00000039090)	FOXR2 (ENSBTAG00000046659)	RRAGB (ENSBTAG00000012980) #24	KLF8 (ENSBTAG00000005852) #25	UBQLN2 (ENSBTAG00000021843)	NBDY (ENSBTAG00000054746) #27	ENSBTAG00000049019	ENSBTAG00000053877 ##29	SPIN2 (ENSBTAG00000013260) #29	SPIN2B (ENSBTAG00000046769) ##29	SPIN2B (ENSBTAG00000038387) ##29	ENSBTAG00000045616	HEPH (ENSBTAG00000047416)	VSIG4 (ENSBTAG00000015769)
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005013304 #32	PHF8 (ENSBIXG00005013537)	FAM120C (ENSBIXG00005013694) #31	ENSBIXG00005013719	WNK3 (ENSBIXG00005013750) #30	ENSBIXG00005001713	FGD1 (ENSBIXG00005013811)	ENSBIXG00005013829	GNL3L (ENSBIXG00005001728)	ENSBIXG00005007315	MAGED2 (ENSBIXG00005014025)	ENSBIXG00005014063	ENSBIXG00005001826	ENSBIXG00005014077	PFKFB1 (ENSBIXG00005014145) #21	APEX2 (ENSBIXG00005014199) #22	ALAS2 (ENSBIXG00005014264) #23	MAGEH1 (ENSBIXG00005001884)	FOXR2 (ENSBIXG00005014322)	RRAGB (ENSBIXG00005014371) #24	KLF8 (ENSBIXG00005014469) #25	UBQLN2 (ENSBIXG00005014517)	NBDY (ENSBIXG00005014528) #27	ENSBIXG00005014533 ##29	ENSBIXG00005002025 #29	ENSBIXG00005014560 ##29	ENSBIXG00005014564 ##29	ENSBIXG00005002029	ENSBIXG00005014584	HEPH (ENSBIXG00005014859)	ENSBIXG00005014906
American bison	MODERN SPECIES	2535																APEX2 (ENSBBBG00000016207) #22