Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000162980	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24	ENSGT00940000163664	ENSGT00840000130063	ENSGT00940000162993	ENSGT00950000183031.B.e.a #25	ENSGT00940000161062 #27	ENSGT00940000162603 #29	ENSGT00940000163673	ENSGT00390000004891 #31	ENSGT00950000182925.D.a.b.a.a.a.b ##32	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b #36	ENSGT00940000154103.b #37	ENSGT00530000063529.B	ENSGT00940000153902.b
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000161236.a.a	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24	ENSGT00950000183031.B.e.a #25	ENSGT00940000161062 #27	ENSGT00940000162603 #29	ENSGT00390000004891 #31	ENSGT00950000182925.D.a.b.a.a.b #32	ENSGT00940000162502 #34	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b #36	ENSGT00940000154103.b #37	ENSGT00530000063529.B	ENSGT00940000153902.b	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000003448 #7	ENSHGLG00000020403 #8	ENSHGLG00000001475 #9	ENSHGLG00000001525 #10	ENSHGLG00000001827 #11	ENSHGLG00000002712 #12	ENSHGLG00000050769 #13	ENSHGLG00000016776 #14	ENSHGLG00000035449 #15	FGD1 (ENSHGLG00000002606) #16	GNL3L (ENSHGLG00000001778) #17	ENSHGLG00000035750 #18	ENSHGLG00000000204 #19	Tro (ENSHGLG00000000236) #20	Pfkfb1 (ENSHGLG00000000258) #21	APEX2 (ENSHGLG00000042453) #22	ENSHGLG00000000297 #23	ALAS2 (ENSHGLG00000000286) #24	RRAGB (ENSHGLG00000000313) #25	ENSHGLG00000040831 #26	ENSHGLG00000000922 #27	ENSHGLG00000037038 #28	UBQLN2 (ENSHGLG00000020145) #29	ENSHGLG00000000962 #30	NBDY (ENSHGLG00000049275) #31	ENSHGLG00000050802 #32	ENSHGLG00000000991 #33	ENSHGLG00000001021 #34	ENSHGLG00000045579 #35	SPIN4 (ENSHGLG00000034676) #36	ARHGEF9 (ENSHGLG00000002050) #37
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00940000161236.a.a	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24	ENSGT00950000183031.B.e.a #25	ENSGT00940000161062 #27	ENSGT00940000162603 #29	ENSGT00390000004891 #31	ENSGT00950000182925.D.a.b.a.a.b #32	ENSGT00940000162502 #34	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b #36	ENSGT00940000154103.b #37	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00940000153664.A.b.a	ENSGT00390000018389	ENSGT00940000159316
Guinea pig	MODERN SPECIES	170													ENSCPOG00000001051 #19	ENSCPOG00000022846 #20	PFKFB1 (ENSCPOG00000007261) #21	APEX2 (ENSCPOG00000007265) #22	ALAS2 (ENSCPOG00000007268) #24	RRAGB (ENSCPOG00000011266) #25	KLF8 (ENSCPOG00000010165) #27	UBQLN2 (ENSCPOG00000013496) #29	NBDY (ENSCPOG00000038469) #31	ENSCPOG00000037454 #32	ENSCPOG00000005007
Hystricomorpha_b	ANCESTRAL SPECIES	74	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00540000070023.c.a.a	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24	ENSGT00950000183031.B.e.a #25	ENSGT00940000161062 #27	ENSGT00940000162603 #29	ENSGT00390000004891 #31	ENSGT00950000182925.D.a.b.a.a.b #32	ENSGT00940000162502 #34	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b #36	ENSGT00940000154103.b #37	ENSGT00940000153902.b	ENSGT00530000063529.B	ENSGT00390000018389	ENSGT00940000159316	ENSGT00390000014785
Long-tailed chinchilla	MODERN SPECIES	182	RIBC1 (ENSCLAG00000005268)	HSD17B10 (ENSCLAG00000006462)	HUWE1 (ENSCLAG00000006361)	ENSCLAG00000006563	PHF8 (ENSCLAG00000007973)	FAM120C (ENSCLAG00000004701)	ENSCLAG00000017687	WNK3 (ENSCLAG00000008201)	ENSCLAG00000007014	TSR2 (ENSCLAG00000007235) #15	FGD1 (ENSCLAG00000002961) #16	GNL3L (ENSCLAG00000003823) #17	MAGED2 (ENSCLAG00000007195) #19	ENSCLAG00000007306 #20	PFKFB1 (ENSCLAG00000009234) #21	APEX2 (ENSCLAG00000017315) #22	ALAS2 (ENSCLAG00000003042) #24	RRAGB (ENSCLAG00000003913) #25	KLF8 (ENSCLAG00000005236) #27	UBQLN2 (ENSCLAG00000017708) #29	NBDY (ENSCLAG00000017820) #31	ENSCLAG00000003312	ENSCLAG00000003441 #32	FAAH2 (ENSCLAG00000003768) #34	SPIN4 (ENSCLAG00000017570) #36	ARHGEF9 (ENSCLAG00000004407) #37	ASB12 (ENSCLAG00000006178)	AMER1 (ENSCLAG00000017657)	ENSCLAG00000007927	ZC4H2 (ENSCLAG00000002934)	ZC3H12B (ENSCLAG00000003600)
Degu	MODERN SPECIES	398													ENSODEG00000000070 #20	ENSODEG00000003143	PFKFB1 (ENSODEG00000003122) #21	ENSODEG00000003095 #22	ENSODEG00000018880	ALAS2 (ENSODEG00000003044) #24	ENSODEG00000003024	ENSODEG00000003009	RRAGB (ENSODEG00000002951) #25	ENSODEG00000002914 #27	ENSODEG00000002898
Sciuridae	ANCESTRAL SPECIES	28	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000162980	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24	ENSGT00390000001055 #23	ENSGT00510000049526	ENSGT00840000130063.e	ENSGT00940000163664	ENSGT00840000130063.f	ENSGT00940000162993	ENSGT00950000183031.B.e.a #25	ENSGT00940000161062 #27	ENSGT00940000162603 #29	ENSGT00940000163673	ENSGT00390000004891 #31	ENSGT00950000182925.D.a.b.a.a.a.b ##32	ENSGT00940000163246	ENSGT00940000162502 #34
Marmotini	ANCESTRAL SPECIES	105	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000162980	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24
Marmotini_b	ANCESTRAL SPECIES	194	ENSGT00940000159667	ENSGT00940000155614	ENSGT00390000010825.a	ENSGT00940000155170	ENSGT00940000156319	ENSGT00940000157847	ENSGT00530000063168.a.a.b	ENSGT00940000160145.b	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000162980	ENSGT00940000161795 #19	ENSGT00940000162763 #20	ENSGT00950000182835.c.c #21	ENSGT00530000063540.a #22	ENSGT00940000159912 #24
Arctic ground squirrel	MODERN SPECIES	360	IQSEC2 (ENSUPAG00010000324)	SMC1A (ENSUPAG00010000638)	RIBC1 (ENSUPAG00010000700)	HSD17B10 (ENSUPAG00010000717)	HUWE1 (ENSUPAG00010000765)	PHF8 (ENSUPAG00010001412)	FAM120C (ENSUPAG00010001651)	WNK3 (ENSUPAG00010001662)	TSR2 (ENSUPAG00010001725) #15	FGD1 (ENSUPAG00010001738) #16	GNL3L (ENSUPAG00010001765) #17	ITIH6 (ENSUPAG00010001804)	MAGED2 (ENSUPAG00010001842) #19	TRO (ENSUPAG00010001905) #20	PFKFB1 (ENSUPAG00010001964) #21	APEX2 (ENSUPAG00010002030) #22	ALAS2 (ENSUPAG00010002077) #24	FAM104B (ENSUPAG00010002111) #23	ENSUPAG00010002151
Squirrel	MODERN SPECIES	351	IQSEC2 (ENSSTOG00000001231)	SMC1A (ENSSTOG00000005481)	RIBC1 (ENSSTOG00000005524)	HSD17B10 (ENSSTOG00000005535)	HUWE1 (ENSSTOG00000005546)	PHF8 (ENSSTOG00000000290)	FAM120C (ENSSTOG00000000293)	WNK3 (ENSSTOG00000000299)	TSR2 (ENSSTOG00000033612) #15	FGD1 (ENSSTOG00000027673) #16	GNL3L (ENSSTOG00000023157) #17	ITIH6 (ENSSTOG00000026991)	MAGED2 (ENSSTOG00000006621) #19	ENSSTOG00000020140 #20	PFKFB1 (ENSSTOG00000016108) #21	APEX2 (ENSSTOG00000025121) #22	ALAS2 (ENSSTOG00000008000) #24	ENSSTOG00000019959
Alpin marmot	MODERN SPECIES	121	IQSEC2 (ENSMMMG00000012831)	SMC1A (ENSMMMG00000012856)	RIBC1 (ENSMMMG00000012889)	HSD17B10 (ENSMMMG00000012895)	HUWE1 (ENSMMMG00000012907)	PHF8 (ENSMMMG00000013095)	FAM120C (ENSMMMG00000013313)	WNK3 (ENSMMMG00000013351)	TSR2 (ENSMMMG00000013450) #15	FGD1 (ENSMMMG00000013467) #16	GNL3L (ENSMMMG00000013506) #17	ITIH6 (ENSMMMG00000013549)	MAGED2 (ENSMMMG00000013585) #19	ENSMMMG00000013632 #20	PFKFB1 (ENSMMMG00000013675) #21	APEX2 (ENSMMMG00000013719) #22	ALAS2 (ENSMMMG00000013791) #24
Eurasian red squirrel	MODERN SPECIES	156	HUWE1 (ENSSVLG00005013657)	PHF8 (ENSSVLG00005013001)	FAM120C (ENSSVLG00005012884)	ENSSVLG00005012811	WNK3 (ENSSVLG00005012128)	ENSSVLG00005012050 #15	FGD1 (ENSSVLG00005011952) #16	GNL3L (ENSSVLG00005011899) #17	ENSSVLG00005011877	ENSSVLG00005011838	ENSSVLG00005011811	ITIH6 (ENSSVLG00005011628)	ENSSVLG00005011487 #19	ENSSVLG00005011142 #20	PFKFB1 (ENSSVLG00005010833) #21	APEX2 (ENSSVLG00005010743) #22	ALAS2 (ENSSVLG00005010575) #24	ENSSVLG00005010526 #23	ENSSVLG00005010499 #23	ENSSVLG00005010473 #23	ENSSVLG00005010447 #23	ENSSVLG00005010343	ENSSVLG00005022919	USP51 (ENSSVLG00005022912)	ENSSVLG00005022899	FOXR2 (ENSSVLG00005022885)	RRAGB (ENSSVLG00005022820) #25	ENSSVLG00005022786	KLF8 (ENSSVLG00005022667) #27	UBQLN2 (ENSSVLG00005022640) #29	ENSSVLG00005022614