Mus	ANCESTRAL SPECIES	9	ENSGT00940000161236.a.a	ENSGT00940000159667 #7	ENSGT00940000155614 #8	ENSGT00390000010825.a #9	ENSGT00940000155170 #10	ENSGT00940000156319 #11	ENSGT00940000157847.h #12	ENSGT00530000063168.a.a.b #13	ENSGT00940000160145.b #14	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000161795 #18	ENSGT00940000162763 #19	ENSGT00950000182835.c.c #20	ENSGT00530000063540.a #22	ENSGT00940000159912 #21	ENSGT00510000049526 #23	ENSGT00940000160039 #24	ENSGT00940000159971 #25	ENSGT01050000244937.a.b.a #26	ENSGT00940000159055 #29	ENSGT00990000203589.a.b.a.b #30	ENSGT00940000163925 #31	ENSGT00390000018248	ENSGT01060000248594.e.a #32	ENSGT00940000159922.b	ENSGT00950000183232	ENSGT00940000161570 #34	ENSGT00940000156128.b #35	ENSGT00950000182988.a.b.b.b #36
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000161236.a.a	ENSGT00940000159667 #7	ENSGT00940000155614 #8	ENSGT00390000010825.a #9	ENSGT00940000155170 #10	ENSGT00940000156319 #11	ENSGT00940000157847.h #12	ENSGT00530000063168.a.a.b.g #13	ENSGT00940000160145.b #14	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000161795 #18	ENSGT00940000162763 #19	ENSGT00950000182835.c.c #20	ENSGT00530000063540.a #22	ENSGT00940000159912 #21	ENSGT00510000049526 #23	ENSGT00940000160039 #24	ENSGT00940000159971 #25	ENSGT01050000244937.a.b.a #26	ENSGT00940000159055 #29	ENSGT00990000203589.a.b.a.b #30	ENSGT00940000163925 #31	ENSGT00390000018248	ENSGT01060000248594.e.a #32	ENSGT00940000159922.b	ENSGT00950000183232	ENSGT00940000161570 #34	ENSGT00940000156128.b #35	ENSGT00950000182988.a.b.b.b #36
Ryukyu mouse	MODERN SPECIES	19	Iqsec2 (MGP_CAROLIEiJ_G0033499) #7	Smc1a (MGP_CAROLIEiJ_G0033498) #8	Ribc1 (MGP_CAROLIEiJ_G0033497) #9	Hsd17b10 (MGP_CAROLIEiJ_G0033496) #10	Huwe1 (MGP_CAROLIEiJ_G0033495) #11	Phf8 (MGP_CAROLIEiJ_G0033494) #12	Fam120c (MGP_CAROLIEiJ_G0033493) #13	Wnk3 (MGP_CAROLIEiJ_G0033492) #14	Tsr2 (MGP_CAROLIEiJ_G0033491) #15	Fgd1 (MGP_CAROLIEiJ_G0033490) #16	Gnl3l (MGP_CAROLIEiJ_G0033489) #17	Maged2 (MGP_CAROLIEiJ_G0033488) #18	Tro (MGP_CAROLIEiJ_G0033487) #19	Pfkfb1 (MGP_CAROLIEiJ_G0033486) #20	Alas2 (MGP_CAROLIEiJ_G0033485) #21	Apex2 (MGP_CAROLIEiJ_G0033484) #22	Tmem29 (MGP_CAROLIEiJ_G0033483) #23	Lrch2 (MGP_CAROLIEiJ_G0033482) #24	Il13ra2 (MGP_CAROLIEiJ_G0033481) #25	Htr2c (MGP_CAROLIEiJ_G0033480) #26	MGP_CAROLIEiJ_G0033479 #27	MGP_CAROLIEiJ_G0033478 #28	Amot (MGP_CAROLIEiJ_G0033477) #29	Lhfpl1 (MGP_CAROLIEiJ_G0033476) #30	Rtl4 (MGP_CAROLIEiJ_G0033475) #31	Trpc5 (MGP_CAROLIEiJ_G0033474) #32	MGP_CAROLIEiJ_G0033473 #33	Dcx (MGP_CAROLIEiJ_G0033472) #34	Capn6 (MGP_CAROLIEiJ_G0033471) #35	Pak3 (MGP_CAROLIEiJ_G0033470) #36	Chrdl1 (MGP_CAROLIEiJ_G0033469) #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000161236.a.a	ENSGT00940000159667 #7	ENSGT00940000155614 #8	ENSGT00390000010825.a #9	ENSGT00940000155170 #10	ENSGT00940000156319 #11	ENSGT00940000157847.h #12	ENSGT00530000063168.a.a.b.g #13	ENSGT00940000160145.b #14	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000161795 #18	ENSGT00940000162763 #19	ENSGT00950000182835.c.c #20	ENSGT00530000063540.a #22	ENSGT00940000159912 #21	ENSGT00510000049526 #23	ENSGT00940000160039 #24	ENSGT00940000159971 #25	ENSGT01050000244937.a.b.a #26	ENSGT00940000159055 #29	ENSGT00990000203589.a.b.a.b #30	ENSGT00940000163925 #31	ENSGT00390000018248	ENSGT01060000248594.e.a #32	ENSGT00940000159922.b	ENSGT00950000183232	ENSGT00940000161570 #34	ENSGT00940000156128.b #35	ENSGT00950000182988.a.b.b.b #36
Mouse	MODERN SPECIES	37	Iqsec2 (ENSMUSG00000041115) #7	Smc1a (ENSMUSG00000041133) #8	Ribc1 (ENSMUSG00000025257) #9	Hsd17b10 (ENSMUSG00000025260) #10	Huwe1 (ENSMUSG00000025261) #11	Phf8 (ENSMUSG00000041229) #12	Fam120c (ENSMUSG00000025262) #13	Wnk3 (ENSMUSG00000041245) #14	Tsr2 (ENSMUSG00000025264) #15	Fgd1 (ENSMUSG00000025265) #16	Gnl3l (ENSMUSG00000025266) #17	Maged2 (ENSMUSG00000025268) #18	Tro (ENSMUSG00000025272) #19	Pfkfb1 (ENSMUSG00000025271) #20	Alas2 (ENSMUSG00000025270) #21	Apex2 (ENSMUSG00000025269) #22	Tmem29 (ENSMUSG00000041353) #23	Gm15091 (ENSMUSG00000095082)	Gm15097 (ENSMUSG00000094378)	Gm10439 (ENSMUSG00000072923)	Gm15085 (ENSMUSG00000095621)	Gm15093 (ENSMUSG00000094941)	Ott (ENSMUSG00000094885)	Luzp4 (ENSMUSG00000079387)	Gm15127 (ENSMUSG00000096834)	Gm15114 (ENSMUSG00000079395)	Gm15107 (ENSMUSG00000072930)	Gm15080 (ENSMUSG00000072931)	Gm15128 (ENSMUSG00000095872)	Lrch2 (ENSMUSG00000031290) #24	Vmn1r239-ps (ENSMUSG00000067262)
Mus_C	ANCESTRAL SPECIES	22	ENSGT00940000159667 #7	ENSGT00940000155614 #8	ENSGT00390000010825.a #9	ENSGT00940000155170 #10	ENSGT00940000156319 #11	ENSGT00940000157847.h #12	ENSGT00530000063168.a.a.b.g #13	ENSGT00940000160145.b #14	ENSGT00390000012692 #15	ENSGT00940000159438 #16	ENSGT00940000155877 #17	ENSGT00940000162980	ENSGT00940000161795 #18	ENSGT00940000162763 #19	ENSGT00950000182835.c.c #20	ENSGT00530000063540.a #22	ENSGT00940000159912 #21	ENSGT00510000049526 #23	ENSGT00940000160039 #24	ENSGT00940000159971 #25	ENSGT01050000244937.a.b.a #26	ENSGT00940000159055 #29	ENSGT00990000203589.a.b.a.b #30	ENSGT00940000163925 #31	ENSGT01060000248594.e.a #32	ENSGT00510000047493.e #33	ENSGT00940000161570 #34	ENSGT00940000156128.b #35	ENSGT00950000182988.a.b.b.b #36	ENSGT00940000160983 #37	ENSGT00730000110943.A.d
spretus	MODERN SPECIES	19	Iqsec2 (MGP_SPRETEiJ_G0034669) #7	Smc1a (MGP_SPRETEiJ_G0034668) #8	Ribc1 (MGP_SPRETEiJ_G0034667) #9	Hsd17b10 (MGP_SPRETEiJ_G0034666) #10	Huwe1 (MGP_SPRETEiJ_G0034665) #11	Phf8 (MGP_SPRETEiJ_G0034664) #12	Fam120c (MGP_SPRETEiJ_G0034663) #13	Wnk3 (MGP_SPRETEiJ_G0034662) #14	Tsr2 (MGP_SPRETEiJ_G0034661) #15	Fgd1 (MGP_SPRETEiJ_G0034660) #16	Gnl3l (MGP_SPRETEiJ_G0034659) #17	Maged2 (MGP_SPRETEiJ_G0034658) #18	Tro (MGP_SPRETEiJ_G0034657) #19	Pfkfb1 (MGP_SPRETEiJ_G0034656) #20	Alas2 (MGP_SPRETEiJ_G0034655) #21	Apex2 (MGP_SPRETEiJ_G0034654) #22	Tmem29 (MGP_SPRETEiJ_G0034653) #23	Lrch2 (MGP_SPRETEiJ_G0034652) #24	Il13ra2 (MGP_SPRETEiJ_G0034651) #25	Htr2c (MGP_SPRETEiJ_G0034650) #26	Amot (MGP_SPRETEiJ_G0034649) #29	Lhfpl1 (MGP_SPRETEiJ_G0034648) #30	Rtl4 (MGP_SPRETEiJ_G0034647) #31	MGP_SPRETEiJ_G0034646	Trpc5 (MGP_SPRETEiJ_G0034645) #32	MGP_SPRETEiJ_G0034644 #33	Dcx (MGP_SPRETEiJ_G0034643) #34	Capn6 (MGP_SPRETEiJ_G0034642) #35	Pak3 (MGP_SPRETEiJ_G0034641) #36	Chrdl1 (MGP_SPRETEiJ_G0034640) #37	Rtl9 (MGP_SPRETEiJ_G0034639)
Shrew mouse	MODERN SPECIES	23	Iqsec2 (MGP_PahariEiJ_G0032038) #7	Smc1a (MGP_PahariEiJ_G0032037) #8	Ribc1 (MGP_PahariEiJ_G0032036) #9	Hsd17b10 (MGP_PahariEiJ_G0032035) #10	Huwe1 (MGP_PahariEiJ_G0032034) #11	Phf8 (MGP_PahariEiJ_G0032033) #12	Fam120c (MGP_PahariEiJ_G0032032) #13	Wnk3 (MGP_PahariEiJ_G0032031) #14	Tsr2 (MGP_PahariEiJ_G0032030) #15	Fgd1 (MGP_PahariEiJ_G0032029) #16	Gnl3l (MGP_PahariEiJ_G0032028) #17	Maged2 (MGP_PahariEiJ_G0032027) #18	MGP_PahariEiJ_G0032026 #19	Pfkfb1 (MGP_PahariEiJ_G0032025) #20	Alas2 (MGP_PahariEiJ_G0032024) #21	Apex2 (MGP_PahariEiJ_G0032023) #22	Tmem29 (MGP_PahariEiJ_G0032022) #23	Lrch2 (MGP_PahariEiJ_G0032021) #24	Il13ra2 (MGP_PahariEiJ_G0032020) #25	Htr2c (MGP_PahariEiJ_G0032019) #26	Amot (MGP_PahariEiJ_G0032018) #29	Lhfpl1 (MGP_PahariEiJ_G0032017) #30	Rtl4 (MGP_PahariEiJ_G0032016) #31	Trpc5 (MGP_PahariEiJ_G0032015) #32	MGP_PahariEiJ_G0032014 #33	MGP_PahariEiJ_G0032013	Dcx (MGP_PahariEiJ_G0032012) #34	Capn6 (MGP_PahariEiJ_G0032011) #35	Pak3 (MGP_PahariEiJ_G0032010) #36	Chrdl1 (MGP_PahariEiJ_G0032009) #37	Rtl9 (MGP_PahariEiJ_G0032008)