Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000165661	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00940000155186 #33	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00960000186730	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Mammalia	ANCESTRAL SPECIES	10	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00960000186730	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Theria	ANCESTRAL SPECIES	11	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00960000186730	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Primates	ANCESTRAL SPECIES	8	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086	ENSGT00940000155846
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00940000156300.d.k.b #10	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.b.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.q.b	ENSGT00940000155846	ENSGT00390000008634
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00940000156300.d.k.b #10	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.b.b #18	ENSGT00390000010283.`b.a.b.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.q.b	ENSGT00940000155846	ENSGT00390000008634
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00940000156300.d.k.b #10	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.b.b #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000161999.t.a.a.b.b.a #30	ENSGT01100000266943 #32	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.q.b
Capuchin	MODERN SPECIES	16	HOMER1 (ENSCCAG00000030989) #7	TENT2 (ENSCCAG00000025646) #8	CMYA5 (ENSCCAG00000019704) #9	ENSCCAG00000026990 #10	MTX3 (ENSCCAG00000031397) #11	THBS4 (ENSCCAG00000016677) #12	SERINC5 (ENSCCAG00000033262) #13	ENSCCAG00000021092 #14	ENSCCAG00000026046 #15	FAM151B (ENSCCAG00000023300) #16	ANKRD34B (ENSCCAG00000004805) #17	ENSCCAG00000023512 #18	MSH3 (ENSCCAG00000022745) #19	ENSCCAG00000016109 #20	RASGRF2 (ENSCCAG00000032681) #21	CKMT2 (ENSCCAG00000023905) #22	ZCCHC9 (ENSCCAG00000034082) #23	ACOT12 (ENSCCAG00000010251) #24	SSBP2 (ENSCCAG00000029743) #25	ATG10 (ENSCCAG00000021612) #26	ENSCCAG00000023908 #27	RPS23 (ENSCCAG00000022444) #28	ENSCCAG00000032614 #29	ENSCCAG00000032509 #30	ENSCCAG00000037444 #31	ENSCCAG00000035743 #32	TMEM167A (ENSCCAG00000021704) #33	XRCC4 (ENSCCAG00000021185) #34	VCAN (ENSCCAG00000026158) #35	ENSCCAG00000029740 #36	HAPLN1 (ENSCCAG00000023370) #37
Bolivian squirrel monkey	MODERN SPECIES	43	BHMT (ENSSBOG00000030724)	JMY (ENSSBOG00000001249)	ENSSBOG00000022728	HOMER1 (ENSSBOG00000030696) #7	TENT2 (ENSSBOG00000025595) #8	CMYA5 (ENSSBOG00000035707) #9	MTX3 (ENSSBOG00000030765) #11	THBS4 (ENSSBOG00000024309) #12	SERINC5 (ENSSBOG00000029391) #13	ZFYVE16 (ENSSBOG00000035944)	FAM151B (ENSSBOG00000027276) #16	ENSSBOG00000034508 ##18	ENSSBOG00000028670	MSH3 (ENSSBOG00000034934) #19	RASGRF2 (ENSSBOG00000032635) #21	CKMT2 (ENSSBOG00000022835) #22	ENSSBOG00000034293 #23	ACOT12 (ENSSBOG00000032766) #24	SSBP2 (ENSSBOG00000026483) #25	ENSSBOG00000032482	ATG10 (ENSSBOG00000032903) #26	RPS23 (ENSSBOG00000025991) #28	ENSSBOG00000019560 #29	ENSSBOG00000025673 #30	ENSSBOG00000034795	ENSSBOG00000035740	ENSSBOG00000033727 #32	TMEM167A (ENSSBOG00000031099) #33	XRCC4 (ENSSBOG00000033444) #34	VCAN (ENSSBOG00000030525) #35	HAPLN1 (ENSSBOG00000020151) #37
Marmoset	MODERN SPECIES	11	CMYA5 (ENSCJAG00000019709) #9	MTX3 (ENSCJAG00000019700) #11	ENSCJAG00000075688	THBS4 (ENSCJAG00000019641) #12	ENSCJAG00000076770	SERINC5 (ENSCJAG00000019619) #13	ZFYVE16 (ENSCJAG00000019584)	ENSCJAG00000077855	FAM151B (ENSCJAG00000052350) #16	ANKRD34B (ENSCJAG00000019567) #17	ENSCJAG00000084278	ENSCJAG00000019556 ##18	MSH3 (ENSCJAG00000019548) #19	ENSCJAG00000083586	RASGRF2 (ENSCJAG00000019512) #21	CKMT2 (ENSCJAG00000019489) #22	ZCCHC9 (ENSCJAG00000042621) #23	ENSCJAG00000072298	ACOT12 (ENSCJAG00000019453) #24	ENSCJAG00000072994	SSBP2 (ENSCJAG00000019418) #25	ENSCJAG00000062963	ENSCJAG00000072035	RPS23 (ENSCJAG00000011247) #28	ENSCJAG00000042632 #29	ENSCJAG00000077051 #33	XRCC4 (ENSCJAG00000011227) #34	VCAN (ENSCJAG00000011161) #35	ENSCJAG00000078201	HAPLN1 (ENSCJAG00000063471) #37	ENSCJAG00000085055
Mas night monkey	MODERN SPECIES	992														ENSANAG00000035978	RASGRF2 (ENSANAG00000028680) #21	CKMT2 (ENSANAG00000037627) #22	ZCCHC9 (ENSANAG00000021689) #23	ACOT12 (ENSANAG00000032859) #24	SSBP2 (ENSANAG00000021537) #25	ATG10 (ENSANAG00000029651) #26	RPS23 (ENSANAG00000019218) #28	ENSANAG00000033330 #29	ENSANAG00000027961 #30	ENSANAG00000035867 #32	TMEM167A (ENSANAG00000036200) #33	XRCC4 (ENSANAG00000032084) #34	VCAN (ENSANAG00000027105) #35	HAPLN1 (ENSANAG00000036107) #37	EDIL3 (ENSANAG00000024200)	COX7C (ENSANAG00000030476)	RASA1 (ENSANAG00000029874)
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086	ENSGT00940000155846
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n	ENSGT00940000155846	ENSGT00390000008634
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n	ENSGT00940000155846	ENSGT00390000008634
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n.b	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.a.a
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n.b	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.a.a
Pan	ANCESTRAL SPECIES	21	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00950000183087.A.a.b.b.g.f	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.a.a
Bonobo	MODERN SPECIES	18	TENT2 (ENSPPAG00000035817) #8	CMYA5 (ENSPPAG00000036589) #9	MTX3 (ENSPPAG00000041435) #11	THBS4 (ENSPPAG00000034900) #12	SERINC5 (ENSPPAG00000039931) #13	SPZ1 (ENSPPAG00000035315)	ENSPPAG00000028959	ENSPPAG00000031592	ZFYVE16 (ENSPPAG00000039709)	ENSPPAG00000037730	FAM151B (ENSPPAG00000038755) #16	ANKRD34B (ENSPPAG00000013994) #17	DHFR (ENSPPAG00000027338) ##18	MSH3 (ENSPPAG00000033989) #19	RASGRF2 (ENSPPAG00000043533) #21	CKMT2 (ENSPPAG00000040035) #22	ZCCHC9 (ENSPPAG00000041281) #23	ACOT12 (ENSPPAG00000041212) #24	SSBP2 (ENSPPAG00000030611) #25	ENSPPAG00000039772	ENSPPAG00000004621	ATG10 (ENSPPAG00000033287) #26	RPS23 (ENSPPAG00000043006) #28	ENSPPAG00000038667 #29	TMEM167A (ENSPPAG00000043917) #33	XRCC4 (ENSPPAG00000040322) #34	ENSPPAG00000015511 #36	VCAN (ENSPPAG00000026050) #35	HAPLN1 (ENSPPAG00000037621) #37	EDIL3 (ENSPPAG00000034784)	ENSPPAG00000028873
Chimpanzee	MODERN SPECIES	18	TENT2 (ENSPTRG00000017028) #8	CMYA5 (ENSPTRG00000023686) #9	ENSPTRG00000039087	MTX3 (ENSPTRG00000051488) #11	THBS4 (ENSPTRG00000017031) #12	SERINC5 (ENSPTRG00000017032) #13	ENSPTRG00000042769	ENSPTRG00000040617	ZFYVE16 (ENSPTRG00000017038)	ENSPTRG00000051397	FAM151B (ENSPTRG00000017039) #16	ANKRD34B (ENSPTRG00000049125) #17	DHFR (ENSPTRG00000017042) ##18	MSH3 (ENSPTRG00000017043) #19	RASGRF2 (ENSPTRG00000017044) #21	CKMT2 (ENSPTRG00000024170) #22	ZCCHC9 (ENSPTRG00000017047) #23	ACOT12 (ENSPTRG00000017048) #24	SSBP2 (ENSPTRG00000017049) #25	ENSPTRG00000045633	ENSPTRG00000039784	ATG10 (ENSPTRG00000017050) #26	RPS23 (ENSPTRG00000017052) #28	ATP6AP1L (ENSPTRG00000050446) #29	TMEM167A (ENSPTRG00000044250) #33	ENSPTRG00000044846	XRCC4 (ENSPTRG00000017054) #34	ENSPTRG00000045929 #36	VCAN (ENSPTRG00000017055) #35	HAPLN1 (ENSPTRG00000017056) #37	EDIL3 (ENSPTRG00000017057)
Human	MODERN SPECIES	17	BHMT (ENSG00000145692)	JMY (ENSG00000152409)	HOMER1 (ENSG00000152413) #7	TENT2 (ENSG00000164329) #8	CMYA5 (ENSG00000164309) #9	MTX3 (ENSG00000177034) #11	THBS4 (ENSG00000113296) #12	SERINC5 (ENSG00000164300) #13	SPZ1 (ENSG00000164299)	ZFYVE16 (ENSG00000039319)	FAM151B (ENSG00000152380) #16	ANKRD34B (ENSG00000189127) #17	DHFR (ENSG00000228716) ##18	MSH3 (ENSG00000113318) #19	RASGRF2 (ENSG00000113319) #21	CKMT2 (ENSG00000131730) #22	ZCCHC9 (ENSG00000131732) #23	ACOT12 (ENSG00000172497) #24	SSBP2 (ENSG00000145687) #25	ATG10 (ENSG00000152348) #26	RPS23 (ENSG00000186468) #28	TMEM167A (ENSG00000174695) #33	XRCC4 (ENSG00000152422) #34	VCAN (ENSG00000038427) #35	HAPLN1 (ENSG00000145681) #37	EDIL3 (ENSG00000164176)	COX7C (ENSG00000127184)	RASA1 (ENSG00000145715)	CCNH (ENSG00000134480)	TMEM161B (ENSG00000164180)	MEF2C (ENSG00000081189)
Gorilla	MODERN SPECIES	18	NCOR1 (ENSGGOG00000001651)	ENSGGOG00000003741	ENSGGOG00000001647	ZSWIM7 (ENSGGOG00000001645)	ADORA2B (ENSGGOG00000001644)	ENSGGOG00000025621	ENSGGOG00000038552	TBC1D26 (ENSGGOG00000015907)	ENSGGOG00000040126	ENSGGOG00000023654	TRIM16 (ENSGGOG00000009625)	ENSGGOG00000039029	DHFR (ENSGGOG00000022366) ##18	MSH3 (ENSGGOG00000008712) #19	RASGRF2 (ENSGGOG00000006976) #21	CKMT2 (ENSGGOG00000005929) #22	ZCCHC9 (ENSGGOG00000013790) #23	ACOT12 (ENSGGOG00000009718) #24	SSBP2 (ENSGGOG00000026863) #25	ENSGGOG00000025646	ATG10 (ENSGGOG00000013109) #26	ENSGGOG00000026751	RPS23 (ENSGGOG00000025014) #28	ENSGGOG00000013925 #29	TMEM167A (ENSGGOG00000042218) #33	XRCC4 (ENSGGOG00000005197) #34	ENSGGOG00000040035	VCAN (ENSGGOG00000016068) #35	HAPLN1 (ENSGGOG00000028491) #37	ENSGGOG00000043369	EDIL3 (ENSGGOG00000025465)
Orangutan	MODERN SPECIES	18	ENSPPYG00000011137 #20	TENT2 (ENSPPYG00000015590) #8	CMYA5 (ENSPPYG00000015591) #9	MTX3 (ENSPPYG00000015592) #11	THBS4 (ENSPPYG00000015593) #12	SERINC5 (ENSPPYG00000015594) #13	SPZ1 (ENSPPYG00000015595)	ENSPPYG00000037278	ENSPPYG00000015596	ZFYVE16 (ENSPPYG00000015597)	FAM151B (ENSPPYG00000015598) #16	ANKRD34B (ENSPPYG00000015599) #17	DHFR (ENSPPYG00000036301) ##18	MSH3 (ENSPPYG00000015601) #19	RASGRF2 (ENSPPYG00000015602) #21	CKMT2 (ENSPPYG00000015603) #22	ZCCHC9 (ENSPPYG00000015604) #23	ENSPPYG00000015605 #24	SSBP2 (ENSPPYG00000015606) #25	ATG10 (ENSPPYG00000015607) #26	RPS23 (ENSPPYG00000030974) #28	ENSPPYG00000015609 #29	TMEM167A (ENSPPYG00000031892) #33	XRCC4 (ENSPPYG00000015612) #34	VCAN (ENSPPYG00000015613) #35	HAPLN1 (ENSPPYG00000015614) #37	EDIL3 (ENSPPYG00000015615)	COX7C (ENSPPYG00000015616)	ENSPPYG00000030583	RASA1 (ENSPPYG00000015618)	CCNH (ENSPPYG00000015619)
Gibbon	MODERN SPECIES	11	CMYA5 (ENSNLEG00000012895) #9	ENSNLEG00000012915 #11	THBS4 (ENSNLEG00000012916) #12	SERINC5 (ENSNLEG00000012931) #13	ENSNLEG00000012943	SPZ1 (ENSNLEG00000018597)	ENSNLEG00000033746	ENSNLEG00000018598	ZFYVE16 (ENSNLEG00000012945)	ENSNLEG00000034030	FAM151B (ENSNLEG00000012975) #16	ENSNLEG00000012989 ##18	MSH3 (ENSNLEG00000012994) #19	ENSNLEG00000030277	RASGRF2 (ENSNLEG00000013038) #21	CKMT2 (ENSNLEG00000013077) #22	ZCCHC9 (ENSNLEG00000029214) #23	ACOT12 (ENSNLEG00000013095) #24	SSBP2 (ENSNLEG00000013116) #25	ATG10 (ENSNLEG00000013189) #26	RPS23 (ENSNLEG00000013203) #28	ENSNLEG00000013214 #29	ENSNLEG00000027406	TMEM167A (ENSNLEG00000013231) #33	XRCC4 (ENSNLEG00000013239) #34	ENSNLEG00000032670	VCAN (ENSNLEG00000013300) #35	HAPLN1 (ENSNLEG00000013393) #37	ENSNLEG00000035592	EDIL3 (ENSNLEG00000013418)	ENSNLEG00000032525
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00390000012652.ab.b	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b	ENSGT00940000155846
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Vervet Monkey	MODERN SPECIES	23	HOMER1 (ENSCSAG00000015226) #7	ENSCSAG00000019419 #20	TENT2 (ENSCSAG00000015221) #8	ENSCSAG00000015214	CMYA5 (ENSCSAG00000015197) #9	MTX3 (ENSCSAG00000015189) #11	THBS4 (ENSCSAG00000015181) #12	SERINC5 (ENSCSAG00000015170) #13	SPZ1 (ENSCSAG00000019420)	ZFYVE16 (ENSCSAG00000015157)	FAM151B (ENSCSAG00000015145) #16	ANKRD34B (ENSCSAG00000019421) #17	DHFR (ENSCSAG00000015136) ##18	MSH3 (ENSCSAG00000015082) #19	RASGRF2 (ENSCSAG00000014982) #21	CKMT2 (ENSCSAG00000014966) #22	ENSCSAG00000014955 #23	ACOT12 (ENSCSAG00000014944) #24	SSBP2 (ENSCSAG00000014933) #25	ATG10 (ENSCSAG00000014925) #26	ENSCSAG00000014919 #28	ENSCSAG00000014915 #29	ENSCSAG00000019422	TMEM167A (ENSCSAG00000014909) #33	XRCC4 (ENSCSAG00000014902) #34	VCAN (ENSCSAG00000014887) #35	HAPLN1 (ENSCSAG00000014853) #37	ENSCSAG00000014846	EDIL3 (ENSCSAG00000014835)	ENSCSAG00000014822	ENSCSAG00000014810
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c.e.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325
Olive baboon	MODERN SPECIES	15	HOMER1 (ENSPANG00000029433) #7	TENT2 (ENSPANG00000017932) #8	CMYA5 (ENSPANG00000006609) #9	MTX3 (ENSPANG00000017204) #11	THBS4 (ENSPANG00000001778) #12	SERINC5 (ENSPANG00000015316) #13	ENSPANG00000047023	ENSPANG00000046950	ENSPANG00000006608	ENSPANG00000009347 #15	FAM151B (ENSPANG00000006073) #16	ANKRD34B (ENSPANG00000021025) #17	ENSPANG00000007428 ##18	MSH3 (ENSPANG00000017879) #19	RASGRF2 (ENSPANG00000010568) #21	CKMT2 (ENSPANG00000011809) #22	ZCCHC9 (ENSPANG00000013570) #23	ACOT12 (ENSPANG00000025089) #24	SSBP2 (ENSPANG00000023319) #25	ENSPANG00000041391	ATG10 (ENSPANG00000003860) #26	RPS23 (ENSPANG00000013597) #28	ENSPANG00000030703 #29	TMEM167A (ENSPANG00000049105) #33	XRCC4 (ENSPANG00000003281) #34	VCAN (ENSPANG00000000300) #35	HAPLN1 (ENSPANG00000043592) #37	EDIL3 (ENSPANG00000002875)	ENSPANG00000046816	ENSPANG00000038247	ENSPANG00000047004
Cercopithecinae_d	ANCESTRAL SPECIES	48	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c.e.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Drill	MODERN SPECIES	1180									ENSMLEG00000005751	ZFYVE16 (ENSMLEG00000038698)	FAM151B (ENSMLEG00000035702) #16	ANKRD34B (ENSMLEG00000019914) #17	ENSMLEG00000003057 ##18	MSH3 (ENSMLEG00000041689) #19	RASGRF2 (ENSMLEG00000032691) #21	CKMT2 (ENSMLEG00000043610) #22	ZCCHC9 (ENSMLEG00000038748) #23	ACOT12 (ENSMLEG00000000119) #24	SSBP2 (ENSMLEG00000033464) #25	ENSMLEG00000034602
Sooty mangabey	MODERN SPECIES	296	JMY (ENSCATG00000031558)	HOMER1 (ENSCATG00000041074) #7	TENT2 (ENSCATG00000038522) #8	CMYA5 (ENSCATG00000030915) #9	MTX3 (ENSCATG00000043566) #11	THBS4 (ENSCATG00000032042) #12	SERINC5 (ENSCATG00000043970) #13	ENSCATG00000030668	ENSCATG00000044681 #15	FAM151B (ENSCATG00000040732) #16	ENSCATG00000015204	ANKRD34B (ENSCATG00000015570) #17	ENSCATG00000042395 ##18	MSH3 (ENSCATG00000033755) #19	RASGRF2 (ENSCATG00000030532) #21	CKMT2 (ENSCATG00000035078) #22	ZCCHC9 (ENSCATG00000042586) #23	ACOT12 (ENSCATG00000041450) #24	SSBP2 (ENSCATG00000042579) #25	ATG10 (ENSCATG00000032132) #26	ENSCATG00000041062 ##28	ENSCATG00000040706 #29	TMEM167A (ENSCATG00000038227) #33	XRCC4 (ENSCATG00000031467) #34	ENSCATG00000045056 #36	VCAN (ENSCATG00000033955) #35	HAPLN1 (ENSCATG00000037967) #37	EDIL3 (ENSCATG00000036627)	ENSCATG00000035380	ENSCATG00000034062	RASA1 (ENSCATG00000014585)
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Pig-tailed macaque	MODERN SPECIES	533	HOMER1 (ENSMNEG00000013996) #7	TENT2 (ENSMNEG00000039295) #8	CMYA5 (ENSMNEG00000037356) #9	MTX3 (ENSMNEG00000008284) #11	THBS4 (ENSMNEG00000027403) #12	SERINC5 (ENSMNEG00000030608) #13	ENSMNEG00000043833	ZFYVE16 (ENSMNEG00000040717)	ENSMNEG00000040805	FAM151B (ENSMNEG00000030974) #16	ENSMNEG00000013926	ANKRD34B (ENSMNEG00000006347) #17	ENSMNEG00000033103 ##18	MSH3 (ENSMNEG00000032256) #19	RASGRF2 (ENSMNEG00000029381) #21	CKMT2 (ENSMNEG00000029549) #22	ZCCHC9 (ENSMNEG00000040582) #23	ACOT12 (ENSMNEG00000044852) #24	SSBP2 (ENSMNEG00000029101) #25	ATG10 (ENSMNEG00000042013) #26	ENSMNEG00000034342 ##28	ENSMNEG00000008902 #29	TMEM167A (ENSMNEG00000041326) #33	XRCC4 (ENSMNEG00000045552) #34	ENSMNEG00000043712 #36	VCAN (ENSMNEG00000036869) #35	HAPLN1 (ENSMNEG00000030175) #37	EDIL3 (ENSMNEG00000042863)	ENSMNEG00000028341	ENSMNEG00000044013	RASA1 (ENSMNEG00000028470)
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.o.b.a	ENSGT00940000155846	ENSGT00390000008634
Rhesus	MODERN SPECIES	16	HOMER1 (ENSMMUG00000017057) #7	TENT2 (ENSMMUG00000020731) #8	CMYA5 (ENSMMUG00000020733) #9	MTX3 (ENSMMUG00000021104) #11	THBS4 (ENSMMUG00000003143) #12	SERINC5 (ENSMMUG00000023533) #13	ENSMMUG00000065072	ENSMMUG00000020845	ZFYVE16 (ENSMMUG00000023177)	FAM151B (ENSMMUG00000019459) #16	ENSMMUG00000062289	ANKRD34B (ENSMMUG00000019460) #17	ENSMMUG00000018283 ##18	MSH3 (ENSMMUG00000018284) #19	RASGRF2 (ENSMMUG00000039944) #21	CKMT2 (ENSMMUG00000006932) #22	ZCCHC9 (ENSMMUG00000020655) #23	ACOT12 (ENSMMUG00000020656) #24	SSBP2 (ENSMMUG00000017583) #25	ATG10 (ENSMMUG00000003577) #26	RPS23 (ENSMMUG00000003578) #28	ATP6AP1L (ENSMMUG00000029954) #29	TMEM167A (ENSMMUG00000046560) #33	XRCC4 (ENSMMUG00000064265) #34	VCAN (ENSMMUG00000011513) #35	HAPLN1 (ENSMMUG00000061282) #37	EDIL3 (ENSMMUG00000007661)	ENSMMUG00000051689	ENSMMUG00000039961	ENSMMUG00000063160	COX7C (ENSMMUG00000040409)
Crab-eating macaque	MODERN SPECIES	16	CMYA5 (ENSMFAG00000000649) #9	MTX3 (ENSMFAG00000003503) #11	THBS4 (ENSMFAG00000033394) #12	SERINC5 (ENSMFAG00000046004) #13	ENSMFAG00000050168	ENSMFAG00000024381	ZFYVE16 (ENSMFAG00000039223)	FAM151B (ENSMFAG00000042443) #16	ENSMFAG00000061609	ANKRD34B (ENSMFAG00000028493) #17	DHFR (ENSMFAG00000045536) ##18	MSH3 (ENSMFAG00000043794) #19	ENSMFAG00000061632	ENSMFAG00000060013	RASGRF2 (ENSMFAG00000003054) #21	CKMT2 (ENSMFAG00000000490) #22	ZCCHC9 (ENSMFAG00000001943) ##23	ACOT12 (ENSMFAG00000000202) #24	SSBP2 (ENSMFAG00000044245) #25	ATG10 (ENSMFAG00000031807) #26	RPS23 (ENSMFAG00000046092) #28	ENSMFAG00000045507 #29	ENSMFAG00000030373	TMEM167A (ENSMFAG00000064295) #33	XRCC4 (ENSMFAG00000013259) #34	VCAN (ENSMFAG00000032675) #35	HAPLN1 (ENSMFAG00000047220) #37	EDIL3 (ENSMFAG00000039875)	ENSMFAG00000059027	ENSMFAG00000048019	ENSMFAG00000063591
Rhinopithecus	ANCESTRAL SPECIES	211	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.a.b.a ##18	ENSGT00550000074949 #19	ENSGT00390000012652.ab.b	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25
Golden snub-nosed monkey	MODERN SPECIES	2554			TENT2 (ENSRROG00000013336) #8	CMYA5 (ENSRROG00000027073) #9	MTX3 (ENSRROG00000023821) #11	THBS4 (ENSRROG00000041552) #12	SERINC5 (ENSRROG00000036945) #13	ENSRROG00000042238	ZFYVE16 (ENSRROG00000045718)	FAM151B (ENSRROG00000031446) #16	ANKRD34B (ENSRROG00000019488) #17	ENSRROG00000036245 ##18	MSH3 (ENSRROG00000031046) #19	ENSRROG00000034696	RASGRF2 (ENSRROG00000032432) #21	CKMT2 (ENSRROG00000028925) #22	ZCCHC9 (ENSRROG00000042005) #23	ACOT12 (ENSRROG00000044675) #24	SSBP2 (ENSRROG00000040398) #25	ATG10 (ENSRROG00000037859) #26	ENSRROG00000033570 #28	ENSRROG00000040597 #29
Black snub-nosed monkey	MODERN SPECIES	353	HOMER1 (ENSRBIG00000026863) #7	TENT2 (ENSRBIG00000028874) #8	CMYA5 (ENSRBIG00000029005) #9	MTX3 (ENSRBIG00000032362) #11	THBS4 (ENSRBIG00000031443) #12	SERINC5 (ENSRBIG00000030587) #13	SPZ1 (ENSRBIG00000034721)	ENSRBIG00000037215	ENSRBIG00000039434 #15	FAM151B (ENSRBIG00000029388) #16	ANKRD34B (ENSRBIG00000041216) #17	ENSRBIG00000040129 ##18	MSH3 (ENSRBIG00000005363) #19	ENSRBIG00000043367	RASGRF2 (ENSRBIG00000044390) #21	CKMT2 (ENSRBIG00000042648) #22	ZCCHC9 (ENSRBIG00000040955) #23	ACOT12 (ENSRBIG00000012524) #24	SSBP2 (ENSRBIG00000043959) #25
Tarsier	MODERN SPECIES	3454																CKMT2 (ENSTSYG00000012411) #22	ZCCHC9 (ENSTSYG00000012423) #23	ENSTSYG00000013327 #24	ENSTSYG00000031351	SSBP2 (ENSTSYG00000009099) #25	ENSTSYG00000034849	ENSTSYG00000032739
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Lemuriformes	ANCESTRAL SPECIES	37	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.u #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000013899.a.a.d	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Mouse lemur	MODERN SPECIES	3	BHMT (ENSMICG00000005487)	JMY (ENSMICG00000032384)	HOMER1 (ENSMICG00000012592) #7	TENT2 (ENSMICG00000038412) #8	CMYA5 (ENSMICG00000017061) #9	MTX3 (ENSMICG00000017066) #11	THBS4 (ENSMICG00000017069) #12	SERINC5 (ENSMICG00000017075) #13	ENSMICG00000016986	ZFYVE16 (ENSMICG00000002405)	FAM151B (ENSMICG00000002412) #16	ENSMICG00000027047 #18	MSH3 (ENSMICG00000016187) #19	ENSMICG00000036427	RASGRF2 (ENSMICG00000016229) #21	CKMT2 (ENSMICG00000016259) #22	ENSMICG00000029554 #23	ACOT12 (ENSMICG00000047986) #24	SSBP2 (ENSMICG00000035810) #25	ATG10 (ENSMICG00000032372) #26	RPS23 (ENSMICG00000034642) #28	ENSMICG00000013969 #29	ENSMICG00000033898	TMEM167A (ENSMICG00000009860) #33	XRCC4 (ENSMICG00000031093) #34	VCAN (ENSMICG00000035948) #35	HAPLN1 (ENSMICG00000034468) #37	EDIL3 (ENSMICG00000014682)	COX7C (ENSMICG00000007888)	ENSMICG00000043126	NUDT12 (ENSMICG00000036782)
Lemuriformes_a	ANCESTRAL SPECIES	43	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.u #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000013899.a.a.d	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Greater bamboo lemur	MODERN SPECIES	488	JMY (ENSPSMG00000022524)	HOMER1 (ENSPSMG00000022599) #7	TENT2 (ENSPSMG00000022674) #8	CMYA5 (ENSPSMG00000022711) #9	MTX3 (ENSPSMG00000022719) #11	THBS4 (ENSPSMG00000022760) #12	SERINC5 (ENSPSMG00000022792) #13	SPZ1 (ENSPSMG00000022808)	ZFYVE16 (ENSPSMG00000022828)	FAM151B (ENSPSMG00000022843) #16	ANKRD34B (ENSPSMG00000022855) #17	ENSPSMG00000022882 #18	MSH3 (ENSPSMG00000022936) #19	ENSPSMG00000022949	RASGRF2 (ENSPSMG00000022998) #21	CKMT2 (ENSPSMG00000023018) #22	ZCCHC9 (ENSPSMG00000023027) #23	ACOT12 (ENSPSMG00000023042) #24
Coquerels sifaka	MODERN SPECIES	999	BHMT (ENSPCOG00000000488)	JMY (ENSPCOG00000019253)	HOMER1 (ENSPCOG00000026991) #7	TENT2 (ENSPCOG00000000920) #8	CMYA5 (ENSPCOG00000025300) #9	MTX3 (ENSPCOG00000024492) #11	THBS4 (ENSPCOG00000026127) #12	ENSPCOG00000004503	SERINC5 (ENSPCOG00000020769) #13	ZFYVE16 (ENSPCOG00000023188)	FAM151B (ENSPCOG00000024049) #16	ENSPCOG00000024489 #18	ENSPCOG00000020321	MSH3 (ENSPCOG00000020396) #19	RASGRF2 (ENSPCOG00000014453) #21	CKMT2 (ENSPCOG00000008586) #22	ZCCHC9 (ENSPCOG00000018504) #23	ACOT12 (ENSPCOG00000025695) #24	SSBP2 (ENSPCOG00000022244) #25	ATG10 (ENSPCOG00000018560) #26	RPS23 (ENSPCOG00000026426) #28	ENSPCOG00000021069 #29	ENSPCOG00000019441	XRCC4 (ENSPCOG00000013394) #34
Bushbaby	MODERN SPECIES	132	BHMT (ENSOGAG00000006820)	JMY (ENSOGAG00000002137)	HOMER1 (ENSOGAG00000012453) #7	TENT2 (ENSOGAG00000012456) #8	CMYA5 (ENSOGAG00000012460) #9	MTX3 (ENSOGAG00000012479) #11	THBS4 (ENSOGAG00000015172) #12	ENSOGAG00000015178 #13	ENSOGAG00000028918	ENSOGAG00000005004 #15	FAM151B (ENSOGAG00000005006) #16	ANKRD34B (ENSOGAG00000003348) #17	ENSOGAG00000025320 #18	MSH3 (ENSOGAG00000011410) #19	RASGRF2 (ENSOGAG00000002537) #21	CKMT2 (ENSOGAG00000002541) #22	ENSOGAG00000002543 #23	ACOT12 (ENSOGAG00000002545) #24	SSBP2 (ENSOGAG00000002548) #25	ATG10 (ENSOGAG00000008161) #26	ENSOGAG00000008163 ##28	ENSOGAG00000008165 #29	TMEM167A (ENSOGAG00000009040) #33	XRCC4 (ENSOGAG00000009045) #34	VCAN (ENSOGAG00000034403) #35	HAPLN1 (ENSOGAG00000009053) #37	EDIL3 (ENSOGAG00000015620)	ENSOGAG00000032711	ENSOGAG00000029577	RASA1 (ENSOGAG00000000055)	CCNH (ENSOGAG00000010421)
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT01100000263873	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Tree shrew	MODERN SPECIES	4254														MSH3 (ENSTBEG00000007001) #19	RASGRF2 (ENSTBEG00000000481) #21	CKMT2 (ENSTBEG00000003202) #22	ACOT12 (ENSTBEG00000003903) #24
Glires	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT01100000263873	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Rabbit	MODERN SPECIES	2		JMY (ENSOCUG00000010050)	HOMER1 (ENSOCUG00000009680) #7	TENT2 (ENSOCUG00000009513) #8	CMYA5 (ENSOCUG00000001264) #9	MTX3 (ENSOCUG00000007868) #11	THBS4 (ENSOCUG00000009244) #12	SERINC5 (ENSOCUG00000004138) #13	ENSOCUG00000005090	ZFYVE16 (ENSOCUG00000001753)	FAM151B (ENSOCUG00000016328) #16	ENSOCUG00000023992 #17	ENSOCUG00000005127 #18	MSH3 (ENSOCUG00000016921) #19	RASGRF2 (ENSOCUG00000003533) #21	CKMT2 (ENSOCUG00000011211) #22	ZCCHC9 (ENSOCUG00000011215) #23	ACOT12 (ENSOCUG00000005358) #24	ENSOCUG00000005365 #25	ENSOCUG00000008736 #26	ENSOCUG00000010363 #28	ENSOCUG00000014110 #29	ENSOCUG00000009326 #33	XRCC4 (ENSOCUG00000015052) #34	VCAN (ENSOCUG00000002613) #35	HAPLN1 (ENSOCUG00000002630) #37	EDIL3 (ENSOCUG00000017338)	ENSOCUG00000029665	ENSOCUG00000029582	ENSOCUG00000002319	ENSOCUG00000006715
Pika	MODERN SPECIES	7758																CKMT2 (ENSOPRG00000010346) #22
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00390000010671	ENSGT01090000259995.a.a.a	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.a	ENSGT01090000260018.A.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00390000006224	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000020753	ENSHGLG00000020559	ENSHGLG00000034789	ENSHGLG00000039088	ENSHGLG00000020225	ENSHGLG00000012824	ENSHGLG00000016331 #13	ENSHGLG00000037044	ENSHGLG00000016542 #15	ENSHGLG00000048104	FAM151B (ENSHGLG00000009614) #16	ENSHGLG00000050164 #17	ENSHGLG00000047767 #18	ENSHGLG00000039829	ENSHGLG00000004494 #21	CKMT2 (ENSHGLG00000005442) #22	ZCCHC9 (ENSHGLG00000041209) #23	ACOT12 (ENSHGLG00000006134) #24	ENSHGLG00000006868 #25	ENSHGLG00000000693	ENSHGLG00000000673	ENSHGLG00000014689	ENSHGLG00000034341	RPL14 (ENSHGLG00000048756)	ENTPD3 (ENSHGLG00000015750)	EIF1B (ENSHGLG00000049723)	MYRIP (ENSHGLG00000033941)	ENSHGLG00000046086	ENSHGLG00000015869	ENSHGLG00000039683	ENSHGLG00000015915
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00390000018500.a	ENSGT00730000111648	ENSGT00390000010671	ENSGT01090000259995.a.a.a	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00390000006224	ENSGT01030000234623.a.b.a #13	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634
Guinea pig	MODERN SPECIES	1	ENSCPOG00000008672	ENSCPOG00000027191	ENSCPOG00000030470	ENSCPOG00000032930	ENSCPOG00000030586	ENSCPOG00000039505	OR2G6 (ENSCPOG00000007311)	CFAP144 (ENSCPOG00000032498)	SERINC5 (ENSCPOG00000006056) #13	ENSCPOG00000008352 #15	FAM151B (ENSCPOG00000036863) #16	ANKRD34B (ENSCPOG00000033954) #17	ENSCPOG00000020993 #18	MSH3 (ENSCPOG00000011122) #19	RASGRF2 (ENSCPOG00000006307) #21	CKMT2 (ENSCPOG00000003941) #22	ZCCHC9 (ENSCPOG00000003947) #23	ACOT12 (ENSCPOG00000009718) #24	SSBP2 (ENSCPOG00000001712) #25	ATG10 (ENSCPOG00000032098) #26	ENSCPOG00000022705	RPS23 (ENSCPOG00000037620) #28	ENSCPOG00000011131 #29	TMEM167A (ENSCPOG00000026186) #33	XRCC4 (ENSCPOG00000012258) #34	ENSCPOG00000039167 #35	HAPLN1 (ENSCPOG00000037148) #37	EDIL3 (ENSCPOG00000006986)	COX7C (ENSCPOG00000037322)	RASA1 (ENSCPOG00000007883)	CCNH (ENSCPOG00000007894)
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00940000163610	ENSGT00940000161175.d	ENSGT00390000018500.a	ENSGT00390000010671	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00390000006224	ENSGT01030000234623.a.b.a #13	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Degu	MODERN SPECIES	170	ENSODEG00000003801	OR2T27 (ENSODEG00000003825)	OR2T11 (ENSODEG00000003838)	ENSODEG00000003848	ENSODEG00000003866	ZNF692 (ENSODEG00000003897)	SH3BP5L (ENSODEG00000003939)	ENSODEG00000003965	OR2G6 (ENSODEG00000019021)	CFAP144 (ENSODEG00000003989)	SERINC5 (ENSODEG00000004021) #13	ENSODEG00000004058 #15	FAM151B (ENSODEG00000004092) #16	MSH3 (ENSODEG00000004134) #19	RASGRF2 (ENSODEG00000004227) #21	CKMT2 (ENSODEG00000004322) #22	ENSODEG00000004349 #23	ACOT12 (ENSODEG00000004907) #24	SSBP2 (ENSODEG00000004975) #25	ATG10 (ENSODEG00000005078) #26	RPS23 (ENSODEG00000005092) #28	ENSODEG00000005103 #29	ENSODEG00000005125 #33	XRCC4 (ENSODEG00000005147) #34	ENSODEG00000005159	ENSODEG00000005176 #35	HAPLN1 (ENSODEG00000005201) #37	EDIL3 (ENSODEG00000005260)	ENSODEG00000005359	ENSODEG00000005376	ENSODEG00000005383
Long-tailed chinchilla	MODERN SPECIES	125	ENSCLAG00000005904	ZNF692 (ENSCLAG00000005826)	SH3BP5L (ENSCLAG00000005774)	ENSCLAG00000005715	ENSCLAG00000017651	ENSCLAG00000005676	OR2G6 (ENSCLAG00000017632)	ENSCLAG00000005631	SERINC5 (ENSCLAG00000005561) #13	ENSCLAG00000005457 #15	FAM151B (ENSCLAG00000005400) #16	ANKRD34B (ENSCLAG00000017846) #17	ENSCLAG00000005365 #18	MSH3 (ENSCLAG00000006074) #19	RASGRF2 (ENSCLAG00000005490) #21	CKMT2 (ENSCLAG00000005343) #22	ZCCHC9 (ENSCLAG00000005289) #23	ACOT12 (ENSCLAG00000005180) #24	SSBP2 (ENSCLAG00000004986) #25	ATG10 (ENSCLAG00000004893) #26	ENSCLAG00000004838	Rps23 (ENSCLAG00000004798) #28	TMEM167A (ENSCLAG00000004734) #33	XRCC4 (ENSCLAG00000004677) #34	ENSCLAG00000004575 #35	HAPLN1 (ENSCLAG00000004483) #37	EDIL3 (ENSCLAG00000004305)	ENSCLAG00000004179	RASA1 (ENSCLAG00000004110)	CCNH (ENSCLAG00000004012)	TMEM161B (ENSCLAG00000003850)
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949.f #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Marmotini	ANCESTRAL SPECIES	23	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949.f #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Marmotini_b	ANCESTRAL SPECIES	89													ENSGT00390000010283 #18	ENSGT00550000074949.f #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634
Squirrel	MODERN SPECIES	69													ENSSTOG00000028494 #18	MSH3 (ENSSTOG00000025220) #19	RASGRF2 (ENSSTOG00000001380) #21	CKMT2 (ENSSTOG00000001399) #22	ZCCHC9 (ENSSTOG00000001407) #23	ACOT12 (ENSSTOG00000001413) #24	SSBP2 (ENSSTOG00000001418) #25	ATG10 (ENSSTOG00000005212) #26	ENSSTOG00000000824 ##28	ENSSTOG00000005230 #29	ENSSTOG00000031235 #33	XRCC4 (ENSSTOG00000023468) #34	ENSSTOG00000026716 #35	HAPLN1 (ENSSTOG00000003875) #37	EDIL3 (ENSSTOG00000003893)	ENSSTOG00000022943	ENSSTOG00000023841	COX7C (ENSSTOG00000034413)	RASA1 (ENSSTOG00000000649)
Arctic ground squirrel	MODERN SPECIES	140													ENSUPAG00010006689 #19	ENSUPAG00010006712 #21	ENSUPAG00010006730 #21	CKMT2 (ENSUPAG00010006756) #22	ACOT12 (ENSUPAG00010006783) #24	SSBP2 (ENSUPAG00010006805) #25	ATG10 (ENSUPAG00010006861) #26	RPS23 (ENSUPAG00010006892) #28	ENSUPAG00010006903 #29	TMEM167A (ENSUPAG00010006916) #33	XRCC4 (ENSUPAG00010006926) #34	ENSUPAG00010006939	ENSUPAG00010006947 #35	HAPLN1 (ENSUPAG00010006988) #37	EDIL3 (ENSUPAG00010006995)	ENSUPAG00010007089
Alpin marmot	MODERN SPECIES	48	BHMT (ENSMMMG00000006936)	JMY (ENSMMMG00000006956)	HOMER1 (ENSMMMG00000006979) #7	TENT2 (ENSMMMG00000007231) #8	CMYA5 (ENSMMMG00000007285) #9	MTX3 (ENSMMMG00000007317) #11	THBS4 (ENSMMMG00000007323) #12	SERINC5 (ENSMMMG00000007357) #13	ENSMMMG00000007362	ENSMMMG00000007367 #15	FAM151B (ENSMMMG00000007697) #16	ANKRD34B (ENSMMMG00000007710) #17	ENSMMMG00000007718 #18	MSH3 (ENSMMMG00000007726) #19	ENSMMMG00000007796 #21	CKMT2 (ENSMMMG00000007828) #22	ZCCHC9 (ENSMMMG00000007846) #23	ACOT12 (ENSMMMG00000007863) #24	SSBP2 (ENSMMMG00000007897) #25	ATG10 (ENSMMMG00000007945) #26	RPS23 (ENSMMMG00000007953) #28	ENSMMMG00000007958	ENSMMMG00000007968 #29	ENSMMMG00000007986 #33	XRCC4 (ENSMMMG00000008004) #34	ENSMMMG00000008014 #35	HAPLN1 (ENSMMMG00000008103) #37	EDIL3 (ENSMMMG00000008149)	COX7C (ENSMMMG00000008226)	RASA1 (ENSMMMG00000008245)	CCNH (ENSMMMG00000008287)
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005013053	HOMER1 (ENSSVLG00005012639) #7	TENT2 (ENSSVLG00005012556) #8	CMYA5 (ENSSVLG00005012391) #9	MTX3 (ENSSVLG00005012299) #11	THBS4 (ENSSVLG00005011815) #12	SERINC5 (ENSSVLG00005011745) #13	ENSSVLG00005011728	ENSSVLG00005011673 #15	FAM151B (ENSSVLG00005011621) #16	ENSSVLG00005011570	ANKRD34B (ENSSVLG00005011548) #17	ENSSVLG00005011452 #18	MSH3 (ENSSVLG00005010940) #19	RASGRF2 (ENSSVLG00005010807) #21	CKMT2 (ENSSVLG00005010620) #22	ZCCHC9 (ENSSVLG00005010577) #23	ACOT12 (ENSSVLG00005010445) #24	SSBP2 (ENSSVLG00005009766) #25	ATG10 (ENSSVLG00005009563) #26	ENSSVLG00005009458 ##28	ENSSVLG00005009400 #29	ENSSVLG00005009361 #33	XRCC4 (ENSSVLG00005009326) #34	VCAN (ENSSVLG00005008932) #35	HAPLN1 (ENSSVLG00005008777) #37	EDIL3 (ENSSVLG00005008647)	ENSSVLG00005008592	RASA1 (ENSSVLG00005008223)	CCNH (ENSSVLG00005008091)	TMEM161B (ENSSVLG00005007974)
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730.a	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.c.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.c.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Chinese hamster chok1gshd	MODERN SPECIES	1	Jmy (ENSCGRG00001018071)	Homer1 (ENSCGRG00001013582) #7	Tent2 (ENSCGRG00001009951) #8	Cmya5 (ENSCGRG00001003968) #9	ENSCGRG00001008349	Mtx3 (ENSCGRG00001011412) #11	Thbs4 (ENSCGRG00001016664) #12	Serinc5 (ENSCGRG00001018453) #13	Spz1 (ENSCGRG00001008238)	Zfyve16 (ENSCGRG00001010507) #15	Fam151b (ENSCGRG00001014403) #16	Ankrd34b (ENSCGRG00001007953) #17	DHFR (ENSCGRG00001012555) #18	Msh3 (ENSCGRG00001012207) #19	Rasgrf2 (ENSCGRG00001001184) #21	Ckmt2 (ENSCGRG00001019134) #22	Zcchc9 (ENSCGRG00001018367) #23	Acot12 (ENSCGRG00001010985) #24	Ssbp2 (ENSCGRG00001010940) #25	Atg10 (ENSCGRG00001012356) #26	Rps23 (ENSCGRG00001005361) #28	Atp6ap1l (ENSCGRG00001003786) #29	Tmem167 (ENSCGRG00001013866) #33	Xrcc4 (ENSCGRG00001022340) #34	ENSCGRG00001014126 #35	Hapln1 (ENSCGRG00001024344) #37	Edil3 (ENSCGRG00001004897)	ENSCGRG00001002366	ENSCGRG00001000944	Cox7c (ENSCGRG00001016442)	ENSCGRG00001007486
Golden Hamster	MODERN SPECIES	620	Dmgdh (ENSMAUG00000011337)	Bhmt2 (ENSMAUG00000008057)	ENSMAUG00000004226	Jmy (ENSMAUG00000015175)	Homer1 (ENSMAUG00000011151) #7	Tent2 (ENSMAUG00000012442) #8	Mtx3 (ENSMAUG00000022165) #11	Thbs4 (ENSMAUG00000009316) #12	Serinc5 (ENSMAUG00000009651) #13	Zfyve16 (ENSMAUG00000001716) #15	Fam151b (ENSMAUG00000022170) #16	Ankrd34b (ENSMAUG00000015327) #17	ENSMAUG00000020170 #18	Msh3 (ENSMAUG00000021619) #19	Rasgrf2 (ENSMAUG00000016036) #21	Ckmt2 (ENSMAUG00000008773) #22	Zcchc9 (ENSMAUG00000022026) #23	Acot12 (ENSMAUG00000019809) #24	Ssbp2 (ENSMAUG00000010660) #25	Atg10 (ENSMAUG00000011026) #26	ENSMAUG00000011243 #28	Atp6ap1l (ENSMAUG00000001232) #29	ENSMAUG00000001668	Tmem167 (ENSMAUG00000000975) #33	Xrcc4 (ENSMAUG00000006508) #34	ENSMAUG00000011125 #35	Hapln1 (ENSMAUG00000008810) #37	ENSMAUG00000022083	Edil3 (ENSMAUG00000009286)	Cox7c (ENSMAUG00000005056)	Rasa1 (ENSMAUG00000011139)
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.c.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Northern American deer mouse	MODERN SPECIES	6	Jmy (ENSPEMG00000021018)	Homer1 (ENSPEMG00000016563) #7	Tent2 (ENSPEMG00000022209) #8	Cmya5 (ENSPEMG00000020808) #9	ENSPEMG00000028963	Mtx3 (ENSPEMG00000020867) #11	Thbs4 (ENSPEMG00000021194) #12	Serinc5 (ENSPEMG00000020960) #13	Spz1 (ENSPEMG00000007489)	Zfyve16 (ENSPEMG00000020714) #15	ENSPEMG00000024785	Ankrd34b (ENSPEMG00000016771) #17	Dhfr (ENSPEMG00000029212) #18	Msh3 (ENSPEMG00000000200) #19	ENSPEMG00000026083 #21	Ckmt2 (ENSPEMG00000011299) #22	Zcchc9 (ENSPEMG00000016614) #23	Acot12 (ENSPEMG00000024088) #24	Ssbp2 (ENSPEMG00000020873) #25	Atg10 (ENSPEMG00000015489) #26	Rps23 (ENSPEMG00000020618) #28	ENSPEMG00000030615	Atp6ap1l (ENSPEMG00000020422) #29	ENSPEMG00000031253	ENSPEMG00000029490	Tmem167 (ENSPEMG00000025163) #33	ENSPEMG00000024390	ENSPEMG00000025116	Xrcc4 (ENSPEMG00000020663) #34	Vcan (ENSPEMG00000021608) #35	Hapln1 (ENSPEMG00000020377) #37
Prairie vole	MODERN SPECIES	6	Bhmt2 (ENSMOCG00000018570)	ENSMOCG00000012797	Jmy (ENSMOCG00000000972)	Homer1 (ENSMOCG00000003233) #7	Tent2 (ENSMOCG00000013416) #8	Cmya5 (ENSMOCG00000020302) #9	Mtx3 (ENSMOCG00000017246) #11	Thbs4 (ENSMOCG00000017937) #12	Serinc5 (ENSMOCG00000017376) #13	Zfyve16 (ENSMOCG00000016512) #15	Fam151b (ENSMOCG00000012595) #16	Ankrd34b (ENSMOCG00000013232) #17	Dhfr (ENSMOCG00000014691) #18	Msh3 (ENSMOCG00000018492) #19	Rasgrf2 (ENSMOCG00000015751) #21	Ckmt2 (ENSMOCG00000003563) #22	Zcchc9 (ENSMOCG00000012433) #23	Acot12 (ENSMOCG00000015615) #24	Ssbp2 (ENSMOCG00000022756) #25	ENSMOCG00000011514	Atg10 (ENSMOCG00000014675) #26	ENSMOCG00000017478 #28	Atp6ap1l (ENSMOCG00000020532) #29	ENSMOCG00000002610	ENSMOCG00000010468	Tmem167 (ENSMOCG00000013381) #33	Xrcc4 (ENSMOCG00000015137) #34	ENSMOCG00000000187 #35	Hapln1 (ENSMOCG00000018799) #37	Edil3 (ENSMOCG00000001973)	ENSMOCG00000016800
Murinae	ANCESTRAL SPECIES	24	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Mus	ANCESTRAL SPECIES	22	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000165493	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000165493	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634.c
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000003122.c.a.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000165493	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846	ENSGT00390000008634.c
Steppe mouse	MODERN SPECIES	3223															Rasgrf2 (ENSMSIG00000029126) #21	Ckmt2 (ENSMSIG00000030879) #22	Zcchc9 (ENSMSIG00000030885) #23	Acot12 (ENSMSIG00000030887) #24	ENSMSIG00000030893	ENSMSIG00000030895 #25	Atg10 (ENSMSIG00000030903) #26	ENSMSIG00000030909	Rps23 (ENSMSIG00000030911) #28	Atp6ap1l (ENSMSIG00000030916) #29	Tmem167 (ENSMSIG00000030926) #33	Xrcc4 (ENSMSIG00000030931) #34	Vcan (ENSMSIG00000030941) #35	Hapln1 (ENSMSIG00000030957) #37	Edil3 (ENSMSIG00000030959)
spretus	MODERN SPECIES	4	Jmy (MGP_SPRETEiJ_G0019664)	Homer1 (MGP_SPRETEiJ_G0019663) #7	Tent2 (MGP_SPRETEiJ_G0019662) #8	Cmya5 (MGP_SPRETEiJ_G0019661) #9	Mtx3 (MGP_SPRETEiJ_G0019660) #11	Thbs4 (MGP_SPRETEiJ_G0019659) #12	Serinc5 (MGP_SPRETEiJ_G0019658) #13	Spz1 (MGP_SPRETEiJ_G0019657)	Zfyve16 (MGP_SPRETEiJ_G0019656) #15	Fam151b (MGP_SPRETEiJ_G0019655) #16	Ankrd34b (MGP_SPRETEiJ_G0019654) #17	Dhfr (MGP_SPRETEiJ_G0019653) #18	MGP_SPRETEiJ_G0019652	Msh3 (MGP_SPRETEiJ_G0019651) #19	Rasgrf2 (MGP_SPRETEiJ_G0019650) #21	Ckmt2 (MGP_SPRETEiJ_G0019649) #22	Zcchc9 (MGP_SPRETEiJ_G0019648) #23	Acot12 (MGP_SPRETEiJ_G0019647) #24	Ssbp2 (MGP_SPRETEiJ_G0019646) #25	MGP_SPRETEiJ_G0019645	Atg10 (MGP_SPRETEiJ_G0019644) #26	Rps23 (MGP_SPRETEiJ_G0019643) #28	Atp6ap1l (MGP_SPRETEiJ_G0019642) #29	MGP_SPRETEiJ_G0019641	Tmem167 (MGP_SPRETEiJ_G0019640) #33	Xrcc4 (MGP_SPRETEiJ_G0019639) #34	Vcan (MGP_SPRETEiJ_G0019638) #35	Hapln1 (MGP_SPRETEiJ_G0019637) #37	Edil3 (MGP_SPRETEiJ_G0019636)	MGP_SPRETEiJ_G0019635	Rasa1 (MGP_SPRETEiJ_G0019634)
Mouse	MODERN SPECIES	4	Jmy (ENSMUSG00000021690)	Homer1 (ENSMUSG00000007617) #7	Tent2 (ENSMUSG00000042167) #8	Cmya5 (ENSMUSG00000047419) #9	Mtx3 (ENSMUSG00000021704) #11	Thbs4 (ENSMUSG00000021702) #12	Serinc5 (ENSMUSG00000021703) #13	Spz1 (ENSMUSG00000046957)	Zfyve16 (ENSMUSG00000021706) #15	Fam151b (ENSMUSG00000034334) #16	Ankrd34b (ENSMUSG00000045034) #17	Dhfr (ENSMUSG00000021707) #18	Gm20379 (ENSMUSG00000100622)	Msh3 (ENSMUSG00000014850) #19	Rasgrf2 (ENSMUSG00000021708) #21	Ckmt2 (ENSMUSG00000021622) #22	Zcchc9 (ENSMUSG00000021621) #23	Acot12 (ENSMUSG00000021620) #24	Ssbp2 (ENSMUSG00000003992) #25	Atg10 (ENSMUSG00000021619) #26	Rps23 (ENSMUSG00000049517) #28	Atp6ap1l (ENSMUSG00000078958) #29	Tmem167 (ENSMUSG00000012422) #33	Xrcc4 (ENSMUSG00000021615) #34	Vcan (ENSMUSG00000021614) #35	Hapln1 (ENSMUSG00000021613) #37	Edil3 (ENSMUSG00000034488)	Cox7c (ENSMUSG00000017778)	Rasa1 (ENSMUSG00000021549)	Ccnh (ENSMUSG00000021548)	Tmem161b (ENSMUSG00000035762)
Ryukyu mouse	MODERN SPECIES	4	MGP_CAROLIEiJ_G0018780	Jmy (MGP_CAROLIEiJ_G0018779)	Homer1 (MGP_CAROLIEiJ_G0018778) #7	Tent2 (MGP_CAROLIEiJ_G0018777) #8	MGP_CAROLIEiJ_G0018776 #9	Mtx3 (MGP_CAROLIEiJ_G0018775) #11	Thbs4 (MGP_CAROLIEiJ_G0018774) #12	Serinc5 (MGP_CAROLIEiJ_G0018773) #13	Spz1 (MGP_CAROLIEiJ_G0018772)	Zfyve16 (MGP_CAROLIEiJ_G0018771) #15	Fam151b (MGP_CAROLIEiJ_G0018770) #16	Ankrd34b (MGP_CAROLIEiJ_G0018769) #17	Dhfr (MGP_CAROLIEiJ_G0018768) #18	Msh3 (MGP_CAROLIEiJ_G0018767) #19	Rasgrf2 (MGP_CAROLIEiJ_G0018766) #21	Ckmt2 (MGP_CAROLIEiJ_G0018765) #22	Zcchc9 (MGP_CAROLIEiJ_G0018764) #23	Acot12 (MGP_CAROLIEiJ_G0018763) #24	Ssbp2 (MGP_CAROLIEiJ_G0018762) #25	Atg10 (MGP_CAROLIEiJ_G0018761) #26	Rps23 (MGP_CAROLIEiJ_G0018760) #28	Atp6ap1l (MGP_CAROLIEiJ_G0018759) #29	MGP_CAROLIEiJ_G0018758	Tmem167 (MGP_CAROLIEiJ_G0018757) #33	Xrcc4 (MGP_CAROLIEiJ_G0018756) #34	Vcan (MGP_CAROLIEiJ_G0018755) #35	Hapln1 (MGP_CAROLIEiJ_G0018754) #37	Edil3 (MGP_CAROLIEiJ_G0018753)	Cox7c (MGP_CAROLIEiJ_G0018752)	Rasa1 (MGP_CAROLIEiJ_G0018751)	Ccnh (MGP_CAROLIEiJ_G0018750)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0015859	Jmy (MGP_PahariEiJ_G0015858)	Homer1 (MGP_PahariEiJ_G0015857) #7	Tent2 (MGP_PahariEiJ_G0015856) #8	Cmya5 (MGP_PahariEiJ_G0015855) #9	Mtx3 (MGP_PahariEiJ_G0015854) #11	Thbs4 (MGP_PahariEiJ_G0015853) #12	Serinc5 (MGP_PahariEiJ_G0015852) #13	Spz1 (MGP_PahariEiJ_G0015851)	Zfyve16 (MGP_PahariEiJ_G0015850) #15	Fam151b (MGP_PahariEiJ_G0015849) #16	Ankrd34b (MGP_PahariEiJ_G0015848) #17	Dhfr (MGP_PahariEiJ_G0015847) #18	Msh3 (MGP_PahariEiJ_G0015846) #19	Rasgrf2 (MGP_PahariEiJ_G0015845) #21	Ckmt2 (MGP_PahariEiJ_G0015844) #22	Zcchc9 (MGP_PahariEiJ_G0015843) #23	Acot12 (MGP_PahariEiJ_G0015842) #24	Ssbp2 (MGP_PahariEiJ_G0015841) #25	Atg10 (MGP_PahariEiJ_G0015840) #26	Rps23 (MGP_PahariEiJ_G0015839) #28	Atp6ap1l (MGP_PahariEiJ_G0015838) #29	Vmn1r75 (MGP_PahariEiJ_G0015837)	Tmem167 (MGP_PahariEiJ_G0015836) #33	Xrcc4 (MGP_PahariEiJ_G0015835) #34	Vcan (MGP_PahariEiJ_G0015834) #35	Hapln1 (MGP_PahariEiJ_G0015833) #37	Edil3 (MGP_PahariEiJ_G0015832)	Cox7c (MGP_PahariEiJ_G0015831)	Rasa1 (MGP_PahariEiJ_G0015830)	Ccnh (MGP_PahariEiJ_G0015829)
Rat	MODERN SPECIES	11	Jmy (ENSRNOG00000050343)	Homer1 (ENSRNOG00000047014) #7	Tent2 (ENSRNOG00000012099) #8	Cmya5 (ENSRNOG00000023803) #9	Mtx3 (ENSRNOG00000023837) #11	Thbs4 (ENSRNOG00000012471) #12	Serinc5 (ENSRNOG00000024039) #13	Spz1 (ENSRNOG00000013050)	Zfyve16 (ENSRNOG00000013055) #15	Fam151b (ENSRNOG00000024136) #16	Ankrd34b (ENSRNOG00000040166) #17	Dhfr (ENSRNOG00000013521) #18	ENSRNOG00000069130	ENSRNOG00000064838	Rasgrf2 (ENSRNOG00000056151) #21	Ckmt2 (ENSRNOG00000055450) #22	Zcchc9 (ENSRNOG00000051682) #23	Acot12 (ENSRNOG00000061414) #24	Ssbp2 (ENSRNOG00000016213) #25	Atg10 (ENSRNOG00000016342) #26	Rps23 (ENSRNOG00000016580) ##28	Atp6ap1l (ENSRNOG00000040201) #29	Tmem167a (ENSRNOG00000016686) #33	Xrcc4 (ENSRNOG00000029966) #34	Vcan (ENSRNOG00000029212) #35	Hapln1 (ENSRNOG00000032002) #37	ENSRNOG00000062828	Edil3 (ENSRNOG00000033064)	ENSRNOG00000064811	Cox7c (ENSRNOG00000030237)	Rasa1 (ENSRNOG00000029185)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1658	ENSNGAG00000020657	Jmy (ENSNGAG00000019761)	Homer1 (ENSNGAG00000010741) #7	Tent2 (ENSNGAG00000014869) #8	Cmya5 (ENSNGAG00000019733) #9	Mtx3 (ENSNGAG00000017121) #11	Thbs4 (ENSNGAG00000003456) #12	Serinc5 (ENSNGAG00000000574) #13	Zfyve16 (ENSNGAG00000019708) #15	Fam151b (ENSNGAG00000005930) #16	Ankrd34b (ENSNGAG00000000386) #17	ENSNGAG00000019496	Dhfr (ENSNGAG00000018704) #18	Msh3 (ENSNGAG00000014298) #19	Rasgrf2 (ENSNGAG00000008843) #21	Ckmt2 (ENSNGAG00000020619) #22	Zcchc9 (ENSNGAG00000017736) #23	Acot12 (ENSNGAG00000009467) #24	Ssbp2 (ENSNGAG00000011787) #25	Atg10 (ENSNGAG00000011883) #26	Rps23 (ENSNGAG00000006354) #28	Atp6ap1l (ENSNGAG00000000435) #29	Tmem167 (ENSNGAG00000018278) #33	Xrcc4 (ENSNGAG00000013424) #34	ENSNGAG00000003748 #35	Hapln1 (ENSNGAG00000001309) #37	Edil3 (ENSNGAG00000011097)
Lesser Egyptian jerboa	MODERN SPECIES	45	ENSJJAG00000022436	Jmy (ENSJJAG00000015924)	Homer1 (ENSJJAG00000014750) #7	ENSJJAG00000012875	Tent2 (ENSJJAG00000015469) #8	Cmya5 (ENSJJAG00000020442) #9	Mtx3 (ENSJJAG00000022368) #11	Thbs4 (ENSJJAG00000014572) #12	Serinc5 (ENSJJAG00000011189) #13	Zfyve16 (ENSJJAG00000019491) #15	Fam151b (ENSJJAG00000012833) #16	Ankrd34b (ENSJJAG00000000619) #17	ENSJJAG00000011657 #18	Msh3 (ENSJJAG00000021941) #19	Rasgrf2 (ENSJJAG00000016070) #21	Ckmt2 (ENSJJAG00000016214) #22	Zcchc9 (ENSJJAG00000015479) #23	Acot12 (ENSJJAG00000010888) #24	Ssbp2 (ENSJJAG00000010960) #25	Atg10 (ENSJJAG00000013587) #26	Rps23 (ENSJJAG00000014219) #28	Atp6ap1l (ENSJJAG00000015522) #29	ENSJJAG00000019023 #33	Xrcc4 (ENSJJAG00000013678) #34	ENSJJAG00000017589 #35	Hapln1 (ENSJJAG00000012871) #37	Edil3 (ENSJJAG00000010032)	ENSJJAG00000012743	ENSJJAG00000023444	ENSJJAG00000001446	ENSJJAG00000003776
Kangaroo rat	MODERN SPECIES	347	Dmgdh (ENSDORG00000000991)	ENSDORG00000025667	Jmy (ENSDORG00000005525)	Homer1 (ENSDORG00000009374) #7	Tent2 (ENSDORG00000007850) #8	Cmya5 (ENSDORG00000026339) #9	Mtx3 (ENSDORG00000028356) #11	Thbs4 (ENSDORG00000005073) #12	Serinc5 (ENSDORG00000005075) #13	Zfyve16 (ENSDORG00000002451) #15	Fam151b (ENSDORG00000015177) #16	Ankrd34b (ENSDORG00000026971) #17	Dhfr (ENSDORG00000024821) #18	Msh3 (ENSDORG00000005509) #19	Rasgrf2 (ENSDORG00000001359) #21	Ckmt2 (ENSDORG00000015691) #22	Zcchc9 (ENSDORG00000001300) #23	Acot12 (ENSDORG00000001303) #24	Ssbp2 (ENSDORG00000001305) #25	ENSDORG00000024485	Atg10 (ENSDORG00000009893) #26	Rps23 (ENSDORG00000001813) #28	Atp6ap1l (ENSDORG00000025510) #29	Tmem167 (ENSDORG00000026989) #33	Xrcc4 (ENSDORG00000015883) #34	ENSDORG00000023517 #35	Hapln1 (ENSDORG00000015896) #37	ENSDORG00000026224	Edil3 (ENSDORG00000000456)	ENSDORG00000004968	Rasa1 (ENSDORG00000001435)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Eulipotyphla	ANCESTRAL SPECIES	1202															ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	1035															RASGRF2 (ENSSARG00000004273) #21	ENSSARG00000004354 #22
Common shrew	MODERN SPECIES	7001																ENSSARG00000006766 #22
Hedgehog	MODERN SPECIES	2855																ENSEEUG00000002390 #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.z
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z	ENSGT00940000155846	ENSGT00390000008634
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.z
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00940000155846	ENSGT00390000008634
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00550000074840.y.a.c	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00940000155846	ENSGT00390000008634
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00550000074840.y.a.c	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.s.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00940000155846	ENSGT00390000008634
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00550000074840.y.a.c	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000154612.n	ENSGT00940000155186.s.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a.c	ENSGT00940000155846
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00550000074840.y.a.c	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000154612.n	ENSGT00940000155186.s.b #33	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a.c
Narwhal	MODERN SPECIES	298	JMY (ENSMMNG00015008440)	HOMER1 (ENSMMNG00015008534) #7	TENT2 (ENSMMNG00015008599) #8	ENSMMNG00015008614	CMYA5 (ENSMMNG00015008628) #9	MTX3 (ENSMMNG00015008650) #11	THBS4 (ENSMMNG00015008670) #12	SERINC5 (ENSMMNG00015008702) #13	SPZ1 (ENSMMNG00015008717)	ZFYVE16 (ENSMMNG00015008743)	FAM151B (ENSMMNG00015008794) #16	ANKRD34B (ENSMMNG00015008806) #17	ENSMMNG00015008817 #18	MSH3 (ENSMMNG00015008850) #19	RASGRF2 (ENSMMNG00015008907) #21	CKMT2 (ENSMMNG00015008945) #22	ZCCHC9 (ENSMMNG00015008963) #23	ACOT12 (ENSMMNG00015008974) #24	SSBP2 (ENSMMNG00015009022) #25	ATG10 (ENSMMNG00015009080) #26	ENSMMNG00015009087 #28	ENSMMNG00015009097 #29	ENSMMNG00015009107	ENSMMNG00015005197 #33	XRCC4 (ENSMMNG00015005213) #34	ENSMMNG00015005224	VCAN (ENSMMNG00015005267) #35	HAPLN1 (ENSMMNG00015005308) #37	ENSMMNG00015005323	EDIL3 (ENSMMNG00015005343)	ENSMMNG00015005384
Beluga whale	MODERN SPECIES	71	JMY (ENSDLEG00000014574)	HOMER1 (ENSDLEG00000014455) #7	ENSDLEG00000014436	PAPD4 (ENSDLEG00000014384) #8	CMYA5 (ENSDLEG00000014094) #9	MTX3 (ENSDLEG00000014026) #11	THBS4 (ENSDLEG00000013983) #12	SERINC5 (ENSDLEG00000013937) #13	SPZ1 (ENSDLEG00000013919)	ZFYVE16 (ENSDLEG00000013817)	FAM151B (ENSDLEG00000013793) #16	ANKRD34B (ENSDLEG00000013781) #17	DHFR (ENSDLEG00000013740) #18	MSH3 (ENSDLEG00000013710) #19	RASGRF2 (ENSDLEG00000013582) #21	CKMT2 (ENSDLEG00000013554) #22	ZCCHC9 (ENSDLEG00000013535) #23	ACOT12 (ENSDLEG00000013510) #24	SSBP2 (ENSDLEG00000013445) #25	ATG10 (ENSDLEG00000013394) #26	RPS23 (ENSDLEG00000013381) ##28	ENSDLEG00000013363	ENSDLEG00000013342 #33	XRCC4 (ENSDLEG00000013308) #34	VCAN (ENSDLEG00000013258) #35	HAPLN1 (ENSDLEG00000013237) #37	EDIL3 (ENSDLEG00000013171)	ENSDLEG00000013150	RASA1 (ENSDLEG00000013059)	CCNH (ENSDLEG00000013031)	TMEM161B (ENSDLEG00000012991)
Vaquita	MODERN SPECIES	14	JMY (ENSPSNG00000004120)	HOMER1 (ENSPSNG00000004084) #7	ENSPSNG00000004038	TENT2 (ENSPSNG00000004010) #8	CMYA5 (ENSPSNG00000003900) #9	MTX3 (ENSPSNG00000003883) #11	THBS4 (ENSPSNG00000003786) #12	SERINC5 (ENSPSNG00000003740) #13	SPZ1 (ENSPSNG00000003718)	ZFYVE16 (ENSPSNG00000003688)	FAM151B (ENSPSNG00000003651) #16	ANKRD34B (ENSPSNG00000003636) #17	ENSPSNG00000003617 #18	MSH3 (ENSPSNG00000003545) #19	RASGRF2 (ENSPSNG00000003476) #21	CKMT2 (ENSPSNG00000003429) #22	ZCCHC9 (ENSPSNG00000003398) #23	ACOT12 (ENSPSNG00000003353) #24	SSBP2 (ENSPSNG00000003238) #25	ATG10 (ENSPSNG00000003163) #26	RPS23 (ENSPSNG00000003143) #28	ENSPSNG00000003094	TMEM167A (ENSPSNG00000003071) #33	ENSPSNG00000003056	XRCC4 (ENSPSNG00000003042) #34	VCAN (ENSPSNG00000002974) #35	HAPLN1 (ENSPSNG00000002928) #37	ENSPSNG00000002915	EDIL3 (ENSPSNG00000002853)	ENSPSNG00000002806	RASA1 (ENSPSNG00000002638)
Dolphin	MODERN SPECIES	3487															RASGRF2 (ENSTTRG00000013785) #21	CKMT2 (ENSTTRG00000013794) #22	ZCCHC9 (ENSTTRG00000013796) #23	ACOT12 (ENSTTRG00000013797) #24
Sperm whale	MODERN SPECIES	19	BHMT (ENSPCTG00005003876)	JMY (ENSPCTG00005003899)	HOMER1 (ENSPCTG00005003925) #7	TENT2 (ENSPCTG00005003973) #8	ENSPCTG00005003995	CMYA5 (ENSPCTG00005004013) #9	MTX3 (ENSPCTG00005004032) #11	THBS4 (ENSPCTG00005004054) #12	SERINC5 (ENSPCTG00005004085) #13	ZFYVE16 (ENSPCTG00005004116)	FAM151B (ENSPCTG00005004159) #16	ANKRD34B (ENSPCTG00005004173) #17	DHFR (ENSPCTG00005004193) #18	MSH3 (ENSPCTG00005004305) #19	RASGRF2 (ENSPCTG00005004383) #21	MiCK (ENSPCTG00005004510) #22	ZCCHC9 (ENSPCTG00005004543) #23	ACOT12 (ENSPCTG00005004589) #24	SSBP2 (ENSPCTG00005004708) #25	ATG10 (ENSPCTG00005004830) #26	ENSPCTG00005004844	RPS23 (ENSPCTG00005004877) #28	ENSPCTG00005004898 #29	ENSPCTG00005004922 #33	XRCC4 (ENSPCTG00005004952) #34	VCAN (ENSPCTG00005005066) #35	HAPLN1 (ENSPCTG00005005652) #37	ENSPCTG00005005670	EDIL3 (ENSPCTG00005005744)	ENSPCTG00005005787	COX7C (ENSPCTG00005005822)
Blue whale	MODERN SPECIES	14	BHMT (ENSBMSG00010006489)	JMY (ENSBMSG00010006531)	HOMER1 (ENSBMSG00010006587) #7	ENSBMSG00010006619 #8	CMYA5 (ENSBMSG00010006643) #9	MTX3 (ENSBMSG00010006662) #11	THBS4 (ENSBMSG00010006679) #12	SERINC5 (ENSBMSG00010006731) #13	SPZ1 (ENSBMSG00010006746)	ENSBMSG00010006757 #15	FAM151B (ENSBMSG00010006772) #16	ANKRD34B (ENSBMSG00010006782) #17	ENSBMSG00010006789 #18	MSH3 (ENSBMSG00010006814) #19	RASGRF2 (ENSBMSG00010006843) #21	CKMT2 (ENSBMSG00010006888) #22	ENSBMSG00010006899 #23	ACOT12 (ENSBMSG00010006914) #24	SSBP2 (ENSBMSG00010006966) #25	ATG10 (ENSBMSG00010007011) #26	RPS23 (ENSBMSG00010007033) #28	ENSBMSG00010007076 #33	XRCC4 (ENSBMSG00010007092) #34	VCAN (ENSBMSG00010007115) #35	HAPLN1 (ENSBMSG00010007160) #37	ENSBMSG00010007170	EDIL3 (ENSBMSG00010007186)	ENSBMSG00010000023	RASA1 (ENSBMSG00010000084)	CCNH (ENSBMSG00010000119)	ENSBMSG00010000148
Pecora	ANCESTRAL SPECIES		ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00950000184894	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Yarkand deer	MODERN SPECIES	32	HMMR (ENSCHYG00000020571)	ENSCHYG00000020819	TENM2 (ENSCHYG00000000801)	WWC1 (ENSCHYG00000001396)	ENSCHYG00000001412	RARS1 (ENSCHYG00000001430)	FBLL1 (ENSCHYG00000001466)	ZFYVE16 (ENSCHYG00000001479)	FAM151B (ENSCHYG00000001495) #16	ANKRD34B (ENSCHYG00000001516) #17	ENSCHYG00000001529 #18	MSH3 (ENSCHYG00000001577) #19	ENSCHYG00000001733	ENSCHYG00000001743	RASGRF2 (ENSCHYG00000001777) #21	CKMT2 (ENSCHYG00000001872) #22	ZCCHC9 (ENSCHYG00000001898) #23	ACOT12 (ENSCHYG00000001923) #24	SSBP2 (ENSCHYG00000002111) #25	ENSCHYG00000002539	ENSCHYG00000002550	ATG10 (ENSCHYG00000002572) #26	RPS23 (ENSCHYG00000002604) #28	ENSCHYG00000002627 #29	ENSCHYG00000002635	ENSCHYG00000002651 #33	XRCC4 (ENSCHYG00000002672) #34	VCAN (ENSCHYG00000002720) #35	HAPLN1 (ENSCHYG00000002889) #37	EDIL3 (ENSCHYG00000002937)	ENSCHYG00000003033
Percora_a	ANCESTRAL SPECIES		ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00950000184894	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Siberian musk deer	MODERN SPECIES	64	NUDCD2 (ENSMMSG00000006955)	HMMR (ENSMMSG00000006997)	MAT2B (ENSMMSG00000007173)	ENSMMSG00000007216	ENSMMSG00000007237	TENM2 (ENSMMSG00000007353)	WWC1 (ENSMMSG00000007937)	RARS1 (ENSMMSG00000007978)	FBLL1 (ENSMMSG00000008027)	ZFYVE16 (ENSMMSG00000008048)	FAM151B (ENSMMSG00000008153) #16	ANKRD34B (ENSMMSG00000008176) #17	ENSMMSG00000008196 #18	MSH3 (ENSMMSG00000008280) #19	RASGRF2 (ENSMMSG00000008773) #21	CKMT2 (ENSMMSG00000008923) #22	ZCCHC9 (ENSMMSG00000008961) #23	ACOT12 (ENSMMSG00000008994) #24	ENSMMSG00000009140 #25	ATG10 (ENSMMSG00000009261) #26	RPS23 (ENSMMSG00000009338) #28	ENSMMSG00000009376 #29	TMEM167A (ENSMMSG00000009408) #33	XRCC4 (ENSMMSG00000009442) #34	VCAN (ENSMMSG00000009492) #35	HAPLN1 (ENSMMSG00000009670) #37	EDIL3 (ENSMMSG00000009709)	ENSMMSG00000009810	ENSMMSG00000009859	RASA1 (ENSMMSG00000009941)	CCNH (ENSMMSG00000010425)
Bovidae	ANCESTRAL SPECIES		ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000154726	ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.b	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00910000147866
Goat	MODERN SPECIES	26	HMMR (ENSCHIG00000026654)	MAT2B (ENSCHIG00000027101)	ENSCHIG00000027115	TENM2 (ENSCHIG00000025474)	ENSCHIG00000018606	WWC1 (ENSCHIG00000012879)	ENSCHIG00000023409	RARS1 (ENSCHIG00000021126)	FBLL1 (ENSCHIG00000005751)	ZFYVE16 (ENSCHIG00000022133)	FAM151B (ENSCHIG00000009422) #16	ANKRD34B (ENSCHIG00000009844) #17	ENSCHIG00000016160 #18	MSH3 (ENSCHIG00000026585) #19	RASGRF2 (ENSCHIG00000027194) #21	CKMT2 (ENSCHIG00000018578) #22	ZCCHC9 (ENSCHIG00000024514) #23	ACOT12 (ENSCHIG00000018595) #24	ENSCHIG00000020381 #25	ENSCHIG00000013647	ATG10 (ENSCHIG00000023237) #26	RPS23 (ENSCHIG00000014944) #28	ENSCHIG00000026375 #29	ENSCHIG00000012625 #33	ENSCHIG00000010267	XRCC4 (ENSCHIG00000015879) #34	VCAN (ENSCHIG00000026117) #35	HAPLN1 (ENSCHIG00000023635) #37	EDIL3 (ENSCHIG00000020190)	ENSCHIG00000018614	ENSCHIG00000026992
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020012972	MAT2B (ENSOARG00020013000)	ENSOARG00020013170	ENSOARG00020013238	ENSOARG00020013302	TENM2 (ENSOARG00020013483)	WWC1 (ENSOARG00020015297)	RARS1 (ENSOARG00020015698)	ENSOARG00020015828	FBLL1 (ENSOARG00020015848)	ZFYVE16 (ENSOARG00020015887)	ANKRD34B (ENSOARG00020016203) #17	DHFR (ENSOARG00020016220) #18	MSH3 (ENSOARG00020016326) #19	RASGRF2 (ENSOARG00020016662) #21	CKMT2 (ENSOARG00020016978) #22	ENSOARG00020017025 #23	ACOT12 (ENSOARG00020017094) #24	SSBP2 (ENSOARG00020017360) #25	ATG10 (ENSOARG00020020709) #26	ENSOARG00020020926	RPS23 (ENSOARG00020020958) #28	TMEM167A (ENSOARG00020021065) #33	ENSOARG00020021132	XRCC4 (ENSOARG00020021156) #34	VCAN (ENSOARG00020021234) #35	HAPLN1 (ENSOARG00020021646) #37	EDIL3 (ENSOARG00020021700)	ENSOARG00020021797	ENSOARG00020021822	RASA1 (ENSOARG00020021922)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.c	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634
Bos	ANCESTRAL SPECIES	3	ENSGT00390000006721	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.a.a.a.b.a.b	ENSGT00940000167952	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.c	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000006721	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.a.a.a.b.a.b	ENSGT00940000167952	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00940000153147.m.a.a.a.a.a
Wild yak	MODERN SPECIES	1673			ENSBMUG00000002191	ENSBMUG00000002209	TENM2 (ENSBMUG00000002419)	ENSBMUG00000002483	WWC1 (ENSBMUG00000002665)	RARS1 (ENSBMUG00000002729)	FBLL1 (ENSBMUG00000002739)	ZFYVE16 (ENSBMUG00000002756)	FAM151B (ENSBMUG00000002772) #16	ANKRD34B (ENSBMUG00000002787) #17	ENSBMUG00000002842 #18	MSH3 (ENSBMUG00000002868) #19	RASGRF2 (ENSBMUG00000002910) #21	CKMT2 (ENSBMUG00000002945) #22	ZCCHC9 (ENSBMUG00000002979) #23	ACOT12 (ENSBMUG00000003028) #24
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001421	ENSBGRG00000001444	TENM2 (ENSBGRG00000001510)	WWC1 (ENSBGRG00000001753)	ENSBGRG00000001798	RARS1 (ENSBGRG00000001810)	FBLL1 (ENSBGRG00000001840)	ZFYVE16 (ENSBGRG00000001850)	ENSBGRG00000001866	FAM151B (ENSBGRG00000001882) #16	ANKRD34B (ENSBGRG00000001888) #17	ENSBGRG00000001908 #18	ENSBGRG00000001927	MSH3 (ENSBGRG00000001953) #19	RASGRF2 (ENSBGRG00000002055) #21	CKMT2 (ENSBGRG00000002164) #22	ZCCHC9 (ENSBGRG00000002188) #23	ACOT12 (ENSBGRG00000002226) #24	ENSBGRG00000002331 #25	ATG10 (ENSBGRG00000002509) #26	ENSBGRG00000002531	RPS23 (ENSBGRG00000002552) #28	ENSBGRG00000002629 #29	ENSBGRG00000002643 #33	XRCC4 (ENSBGRG00000002672) #34	ENSBGRG00000002717 #35	HAPLN1 (ENSBGRG00000002793) #37	EDIL3 (ENSBGRG00000002823)	ENSBGRG00000002876	ENSBGRG00000002891	ENSBGRG00000002911
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000007135	ENSGT00390000006721.d	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.a.a.a.b.a.b	ENSGT00940000167952	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.c	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005026302	ENSBIXG00005026331	ENSBIXG00005026367	TENM2 (ENSBIXG00005026969)	ENSBIXG00005027111	WWC1 (ENSBIXG00005027164)	RARS1 (ENSBIXG00005027188)	FBLL1 (ENSBIXG00005027200)	ENSBIXG00005027201	ZFYVE16 (ENSBIXG00005027263)	FAM151B (ENSBIXG00005004697) #16	ANKRD34B (ENSBIXG00005004705) #17	ENSBIXG00005027356 #18	MSH3 (ENSBIXG00005027416) #19	RASGRF2 (ENSBIXG00005027490) #21	CKMT2 (ENSBIXG00005027530) #22	ZCCHC9 (ENSBIXG00005027597) #23	ACOT12 (ENSBIXG00005027646) #24	SSBP2 (ENSBIXG00005027806) #25	ATG10 (ENSBIXG00005027902) #26	RPS23 (ENSBIXG00005027957) #28	ENSBIXG00005007595 #29	ENSBIXG00005028035 #33	XRCC4 (ENSBIXG00005006967) #34	VCAN (ENSBIXG00005028318) #35	HAPLN1 (ENSBIXG00005028378) #37	EDIL3 (ENSBIXG00005028476)	ENSBIXG00005004939	ENSBIXG00005004944	ENSBIXG00005002395	ENSBIXG00005002359
Cow	MODERN SPECIES	26	ENSBTAG00000051872	ENSBTAG00000050903	ENSBTAG00000049237	ENSBTAG00000030274	TENM2 (ENSBTAG00000025071)	WWC1 (ENSBTAG00000013880)	ENSBTAG00000051069	RARS1 (ENSBTAG00000014626)	FBLL1 (ENSBTAG00000004657)	ZFYVE16 (ENSBTAG00000021577)	FAM151B (ENSBTAG00000007632) #16	ANKRD34B (ENSBTAG00000007633) #17	DHFR (ENSBTAG00000007681) #18	MSH3 (ENSBTAG00000007684) #19	RASGRF2 (ENSBTAG00000030259) #21	CKMT2 (ENSBTAG00000001003) #22	ZCCHC9 (ENSBTAG00000005265) #23	ACOT12 (ENSBTAG00000011110) #24	SSBP2 (ENSBTAG00000013856) #25	ATG10 (ENSBTAG00000038117) #26	RPS23 (ENSBTAG00000013358) #28	ATP6AP1L (ENSBTAG00000050733) #29	TMEM167A (ENSBTAG00000039591) #33	XRCC4 (ENSBTAG00000024275) #34	VCAN (ENSBTAG00000014906) #35	HAPLN1 (ENSBTAG00000012411) #37	EDIL3 (ENSBTAG00000044033)	ENSBTAG00000039555	ENSBTAG00000037434	RASA1 (ENSBTAG00000009565)	ENSBTAG00000039523
American bison	MODERN SPECIES	3347	NUDCD2 (ENSBBBG00000015507)	HMMR (ENSBBBG00000015491)	MAT2B (ENSBBBG00000015365)	ENSBBBG00000003815	TENM2 (ENSBBBG00000003500)	WWC1 (ENSBBBG00000015306)	ENSBBBG00000015267	RARS1 (ENSBBBG00000015251)	FBLL1 (ENSBBBG00000015226)	ZFYVE16 (ENSBBBG00000008156)	FAM151B (ENSBBBG00000003762) #16	ANKRD34B (ENSBBBG00000015166) #17	ENSBBBG00000003536 #18	MSH3 (ENSBBBG00000002773) #19	RASGRF2 (ENSBBBG00000014983) #21	CKMT2 (ENSBBBG00000000814) #22	ZCCHC9 (ENSBBBG00000003607) #23	ACOT12 (ENSBBBG00000003637) #24	SSBP2 (ENSBBBG00000000825) #25	ATG10 (ENSBBBG00000001167) #26	RPS23 (ENSBBBG00000001192) #28	ENSBBBG00000001222 #29	ENSBBBG00000014913 #33	XRCC4 (ENSBBBG00000008154) #34	VCAN (ENSBBBG00000014864) #35	HAPLN1 (ENSBBBG00000014722) #37	EDIL3 (ENSBBBG00000014711)	ENSBBBG00000003562
Camelidae	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Arabian camel	MODERN SPECIES	22	BHMT (ENSCDRG00005019118)	JMY (ENSCDRG00005019085)	HOMER1 (ENSCDRG00005018978) #7	TENT2 (ENSCDRG00005018837) #8	CMYA5 (ENSCDRG00005018749) #9	MTX3 (ENSCDRG00005018661) #11	THBS4 (ENSCDRG00005018591) #12	SERINC5 (ENSCDRG00005018540) #13	SPZ1 (ENSCDRG00005018521)	ZFYVE16 (ENSCDRG00005018452)	FAM151B (ENSCDRG00005018435) #16	ANKRD34B (ENSCDRG00005018428) #17	ENSCDRG00005018379 #18	MSH3 (ENSCDRG00005017666) #19	RASGRF2 (ENSCDRG00005017402) #21	CKMT2 (ENSCDRG00005017343) #22	ZCCHC9 (ENSCDRG00005017268) #23	ACOT12 (ENSCDRG00005017206) #24	SSBP2 (ENSCDRG00005017010) #25	ATG10 (ENSCDRG00005016936) #26	RPS23 (ENSCDRG00005016870) ##28	ENSCDRG00005016847 #29	TMEM167A (ENSCDRG00005016802) #33	XRCC4 (ENSCDRG00005016772) #34	VCAN (ENSCDRG00005016571) #35	HAPLN1 (ENSCDRG00005016491) #37	ENSCDRG00005016462	EDIL3 (ENSCDRG00005016390)	ENSCDRG00005016325	RASA1 (ENSCDRG00005016008)	CCNH (ENSCDRG00005015934)
Alpaca	MODERN SPECIES	3620	BHMT2 (ENSVPAG00000009398)	BHMT (ENSVPAG00000009399)	JMY (ENSVPAG00000009400)	HOMER1 (ENSVPAG00000009401) #7	TENT2 (ENSVPAG00000009402) #8	CMYA5 (ENSVPAG00000009403) #9	ENSVPAG00000009404 #11	THBS4 (ENSVPAG00000009405) #12	SERINC5 (ENSVPAG00000009406) #13	SPZ1 (ENSVPAG00000009408)	ENSVPAG00000009409 #15	FAM151B (ENSVPAG00000009411) #16	ANKRD34B (ENSVPAG00000009413) #17	MSH3 (ENSVPAG00000009414) #19	RASGRF2 (ENSVPAG00000009416) #21	CKMT2 (ENSVPAG00000009421) #22	ZCCHC9 (ENSVPAG00000009423) #23	ACOT12 (ENSVPAG00000009424) #24	SSBP2 (ENSVPAG00000009425) #25	ATG10 (ENSVPAG00000009426) #26	RPS23 (ENSVPAG00000009427) #28	ENSVPAG00000009428 #29
Suina	ANCESTRAL SPECIES	11	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00390000018086.z	ENSGT00940000155846	ENSGT00390000008634
Chacoan peccary	MODERN SPECIES	204	BHMT (ENSCWAG00000010882)	JMY (ENSCWAG00000010992)	HOMER1 (ENSCWAG00000011069) #7	TENT2 (ENSCWAG00000011540) #8	CMYA5 (ENSCWAG00000011677) #9	MTX3 (ENSCWAG00000012419) #11	THBS4 (ENSCWAG00000012471) #12	SERINC5 (ENSCWAG00000012870) #13	SPZ1 (ENSCWAG00000013102)	ENSCWAG00000013133 #15	FAM151B (ENSCWAG00000013202) #16	ANKRD34B (ENSCWAG00000013240) #17	ENSCWAG00000013255 #18	MSH3 (ENSCWAG00000013447) #19	RASGRF2 (ENSCWAG00000017055) #21	CKMT2 (ENSCWAG00000017315) #22	ZCCHC9 (ENSCWAG00000017376) #23	ACOT12 (ENSCWAG00000017413) #24	SSBP2 (ENSCWAG00000017558) #25	ATG10 (ENSCWAG00000017706) #26	RPS23 (ENSCWAG00000017751) #28	ENSCWAG00000017781 #29	TMEM167A (ENSCWAG00000017841) #33	XRCC4 (ENSCWAG00000017866) #34	VCAN (ENSCWAG00000017930) #35	HAPLN1 (ENSCWAG00000018099) #37	EDIL3 (ENSCWAG00000018152)	COX7C (ENSCWAG00000018267)	RASA1 (ENSCWAG00000018315)	CCNH (ENSCWAG00000018608)	TMEM161B (ENSCWAG00000018662)
Pig	MODERN SPECIES	10	JMY (ENSSSCG00000014112)	HOMER1 (ENSSSCG00000014113) #7	ENSSSCG00000043942	TENT2 (ENSSSCG00000014114) #8	CMYA5 (ENSSSCG00000026098) #9	MTX3 (ENSSSCG00000014116) #11	THBS4 (ENSSSCG00000014117) #12	SERINC5 (ENSSSCG00000014119) #13	SPZ1 (ENSSSCG00000014122)	ZFYVE16 (ENSSSCG00000014121)	FAM151B (ENSSSCG00000014123) #16	ANKRD34B (ENSSSCG00000014124) #17	ENSSSCG00000031117 #18	MSH3 (ENSSSCG00000014126) #19	RASGRF2 (ENSSSCG00000014127) #21	CKMT2 (ENSSSCG00000014128) #22	ZCCHC9 (ENSSSCG00000014129) #23	ACOT12 (ENSSSCG00000036095) #24	SSBP2 (ENSSSCG00000035757) #25	ATG10 (ENSSSCG00000025210) #26	ENSSSCG00000049576	RPS23 (ENSSSCG00000014133) #28	ENSSSCG00000014132 #29	ENSSSCG00000047325	ENSSSCG00000057529	TMEM167A (ENSSSCG00000056442) #33	ENSSSCG00000045510	VCAN (ENSSSCG00000014136) #35	ENSSSCG00000038060	HAPLN1 (ENSSSCG00000014137) #37	EDIL3 (ENSSSCG00000026780)
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334
Carnivora	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z.j.b	ENSGT00990000209137
Caniformia	ANCESTRAL SPECIES	5	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.b	ENSGT00390000018086.z.j.b.a.a
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.b
Mustelinae	ANCESTRAL SPECIES	38	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00990000209137	ENSGT00940000155846	ENSGT00390000008634
Ferret	MODERN SPECIES	231								ENSMPUG00000008715 #16	ANKRD34B (ENSMPUG00000019827) #17	ENSMPUG00000008712	ENSMPUG00000008704 #18	ENSMPUG00000008702	MSH3 (ENSMPUG00000008661) #19	ENSMPUG00000008654	RASGRF2 (ENSMPUG00000008451) #21	CKMT2 (ENSMPUG00000008281) #22	ZCCHC9 (ENSMPUG00000008276) #23	ACOT12 (ENSMPUG00000008154) #24	ENSMPUG00000008145 #25	ATG10 (ENSMPUG00000008122) #26	RPS23 (ENSMPUG00000008114) #28	ENSMPUG00000008101 #29	XRCC4 (ENSMPUG00000008093) #34	VCAN (ENSMPUG00000008080) #35	HAPLN1 (ENSMPUG00000008073) #37	ENSMPUG00000008068	EDIL3 (ENSMPUG00000008054)	ENSMPUG00000008011	RASA1 (ENSMPUG00000007995)	CCNH (ENSMPUG00000007985)	TMEM161B (ENSMPUG00000007974)
American mink	MODERN SPECIES	112	JMY (ENSNVIG00000002287)	HOMER1 (ENSNVIG00000002206) #7	TENT2 (ENSNVIG00000002064) #8	CMYA5 (ENSNVIG00000002033) #9	MTX3 (ENSNVIG00000002002) #11	THBS4 (ENSNVIG00000001935) #12	SERINC5 (ENSNVIG00000001875) #13	SPZ1 (ENSNVIG00000001867)	ZFYVE16 (ENSNVIG00000001838)	F151B (ENSNVIG00000001809) #16	AN34B (ENSNVIG00000001804) #17	ENSNVIG00000001739 #18	MSH3 (ENSNVIG00000000962) #19	ENSNVIG00000000947	RASGRF2 (ENSNVIG00000000915) #21	CKMT2 (ENSNVIG00000000895) #22	ZCCHC9 (ENSNVIG00000000879) #23	ACOT12 (ENSNVIG00000000839) #24	SSBP2 (ENSNVIG00000000485) #25	ENSNVIG00000000465	ATG10 (ENSNVIG00000000443) #26	ENSNVIG00000000430	RPS23 (ENSNVIG00000000390) ##28
Ursidae	ANCESTRAL SPECIES	16	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227.h.b #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.b	ENSGT00940000155846	ENSGT00390000008634
Ursus	ANCESTRAL SPECIES	3	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227.h.b #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.c #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29
American black bear	MODERN SPECIES	6833																CKMT2 (ENSUAMG00000028185) #22
Polar bear	MODERN SPECIES	447	BHMT (ENSUMAG00000001999)	JMY (ENSUMAG00000002008)	HOMER1 (ENSUMAG00000002034) #7	ENSUMAG00000002085 #7	TENT2 (ENSUMAG00000002121) #8	CMYA5 (ENSUMAG00000002136) #9	MTX3 (ENSUMAG00000002205) #11	THBS4 (ENSUMAG00000002341) #12	SERINC5 (ENSUMAG00000002880) #13	SPZ1 (ENSUMAG00000002883)	ZFYVE16 (ENSUMAG00000002887)	FAM151B (ENSUMAG00000002893) #16	ENSUMAG00000002915 #18	MSH3 (ENSUMAG00000002941) #19	RASGRF2 (ENSUMAG00000003013) #21	CKMT2 (ENSUMAG00000003245) #22	ZCCHC9 (ENSUMAG00000003264) #23	ACOT12 (ENSUMAG00000003268) #24	SSBP2 (ENSUMAG00000003294) #25	ATG10 (ENSUMAG00000003350) #26	RPS23 (ENSUMAG00000003372) #28	ENSUMAG00000003378 #29
Giant Panda	MODERN SPECIES	13	JMY (ENSAMEG00000015594)	HOMER1 (ENSAMEG00000015607) #7	TENT2 (ENSAMEG00000015619) #8	CMYA5 (ENSAMEG00000015633) #9	MTX3 (ENSAMEG00000015643) #11	THBS4 (ENSAMEG00000015652) #12	SERINC5 (ENSAMEG00000015721) #13	SPZ1 (ENSAMEG00000019078)	ZFYVE16 (ENSAMEG00000015737)	FAM151B (ENSAMEG00000015740) #16	ANKRD34B (ENSAMEG00000019111) #17	ENSAMEG00000015750 #18	MSH3 (ENSAMEG00000015754) #19	RASGRF2 (ENSAMEG00000015782) #21	ENSAMEG00000028748	CKMT2 (ENSAMEG00000015838) #22	ACOT12 (ENSAMEG00000015867) #24	SSBP2 (ENSAMEG00000015913) #25	ATG10 (ENSAMEG00000015949) #26	ENSAMEG00000028746	RPS23 (ENSAMEG00000015966) #28	ENSAMEG00000027104 #29	TMEM167A (ENSAMEG00000023466) #33	XRCC4 (ENSAMEG00000007459) #34	VCAN (ENSAMEG00000007464) #35	HAPLN1 (ENSAMEG00000007517) #37	EDIL3 (ENSAMEG00000004721)	COX7C (ENSAMEG00000013441)	RASA1 (ENSAMEG00000013362)	CCNH (ENSAMEG00000013328)	TMEM161B (ENSAMEG00000013309)
Canidae	ANCESTRAL SPECIES	52	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.e.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.a	ENSGT00940000155846
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.e.a.a.b #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.b.b	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.a	ENSGT00940000155846	ENSGT00390000008634
Dog	MODERN SPECIES	22	HOMER1 (ENSCAFG00845006728) #7	TENT2 (ENSCAFG00845006530) #8	CMYA5 (ENSCAFG00845006378) #9	MTX3 (ENSCAFG00845006230) #11	THBS4 (ENSCAFG00845006098) #12	ENSCAFG00845006060	SERINC5 (ENSCAFG00845006037) #13	SPZ1 (ENSCAFG00845006011)	ZFYVE16 (ENSCAFG00845005949)	FAM151B (ENSCAFG00845005890) #16	ANKRD34B (ENSCAFG00845005864) #17	ENSCAFG00845005830 #18	MSH3 (ENSCAFG00845022317) #19	ENSCAFG00845022211	RASGRF2 (ENSCAFG00845021795) #21	CKMT2 (ENSCAFG00845021668) #22	ZCCHC9 (ENSCAFG00845021627) #23	ACOT12 (ENSCAFG00845021525) #24	SSBP2 (ENSCAFG00845021264) #25	ENSCAFG00845021100 #26	ENSCAFG00845021041	RPS23 (ENSCAFG00845020943) ##28	ENSCAFG00845020741 #29	TMEM167A (ENSCAFG00845020637) #33	XRCC4 (ENSCAFG00845020506) #34	VCAN (ENSCAFG00845020098) #35	HAPLN1 (ENSCAFG00845019962) #37	EDIL3 (ENSCAFG00845019823)	ENSCAFG00845019702	ENSCAFG00845019654	ENSCAFG00845019491
Dingo	MODERN SPECIES	138	MTX3 (ENSCAFG00020026315) #11	THBS4 (ENSCAFG00020026420) #12	ENSCAFG00020026808	ENSCAFG00020026810	SERINC5 (ENSCAFG00020026812) #13	SPZ1 (ENSCAFG00020026814)	ZFYVE16 (ENSCAFG00020026815)	ENSCAFG00020026816	FAM151B (ENSCAFG00020026818) #16	ANKRD34B (ENSCAFG00020026819) #17	ENSCAFG00020000151 #18	MSH3 (ENSCAFG00020000422) #19	ENSCAFG00020001180	RASGRF2 (ENSCAFG00020001341) #21	ENSCAFG00020002891	CKMT2 (ENSCAFG00020002898) #22	ZCCHC9 (ENSCAFG00020002911) #23	ACOT12 (ENSCAFG00020002922) #24	SSBP2 (ENSCAFG00020002937) #25	ATG10 (ENSCAFG00020002977) #26	ENSCAFG00020002993 ##28	ENSCAFG00020003016	ENSCAFG00020003017 #29	ENSCAFG00020003023	XRCC4 (ENSCAFG00020003038) #34	ENSCAFG00020003191	ENSCAFG00020003203 #35	HAPLN1 (ENSCAFG00020003233) #37	EDIL3 (ENSCAFG00020003249)	ENSCAFG00020003272	ENSCAFG00020003294
Red fox	MODERN SPECIES	27	HOMER1 (ENSVVUG00000024979) #7	TENT2 (ENSVVUG00000024977) #8	CMYA5 (ENSVVUG00000024975) #9	ENSVVUG00000024973	MTX3 (ENSVVUG00000024969) #11	THBS4 (ENSVVUG00000024964) #12	SERINC5 (ENSVVUG00000024958) #13	SPZ1 (ENSVVUG00000024956)	ZFYVE16 (ENSVVUG00000024953)	FAM151B (ENSVVUG00000024951) #16	ANKRD34B (ENSVVUG00000024950) #17	ENSVVUG00000024949	DHFR (ENSVVUG00000024946) #18	MSH3 (ENSVVUG00000024903) #19	RASGRF2 (ENSVVUG00000024881) #21	CKMT2 (ENSVVUG00000024873) #22	CCNI (ENSVVUG00000024871)	CCNG2 (ENSVVUG00000024867)	CXCL13 (ENSVVUG00000024863)	CNOT6L (ENSVVUG00000024858)	MRPL1 (ENSVVUG00000024857)	ENSVVUG00000024856	FRAS1 (ENSVVUG00000024813)	ANXA3 (ENSVVUG00000024795)	ENSVVUG00000024794	BMP2K (ENSVVUG00000024784)	PAQR3 (ENSVVUG00000024780)	ENSVVUG00000024772	ENSVVUG00000024769	GK2 (ENSVVUG00000024765)	ANTXR2 (ENSVVUG00000024752)
Felidae	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k.f	ENSGT00940000155846
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000161069.h	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00950000184259	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT01000000215143	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k.f
Tiger	MODERN SPECIES	134	HOMER1 (ENSPTIG00000018119) #7	TENT2 (ENSPTIG00000015267) #8	CMYA5 (ENSPTIG00000014447) #9	ENSPTIG00000014075 #11	THBS4 (ENSPTIG00000012684) #12	SERINC5 (ENSPTIG00000011391) #13	SPZ1 (ENSPTIG00000004689)	ZFYVE16 (ENSPTIG00000010471)	FAM151B (ENSPTIG00000009413) #16	ANKRD34B (ENSPTIG00000004658) #17	ENSPTIG00000007949	ENSPTIG00000006963 #18	MSH3 (ENSPTIG00000000043) #19	ENSPTIG00000021977	RASGRF2 (ENSPTIG00000021051) #21	CKMT2 (ENSPTIG00000018190) #22	ZCCHC9 (ENSPTIG00000017303) #23	ACOT12 (ENSPTIG00000016875) #24	SSBP2 (ENSPTIG00000010302) #25	ATG10 (ENSPTIG00000007429) #26	ENSPTIG00000006771	RPS23 (ENSPTIG00000021170) #28	ENSPTIG00000020744 #29	ENSPTIG00000020576	TMEM167A (ENSPTIG00000020380) #33	XRCC4 (ENSPTIG00000018886) #34	ENSPTIG00000015827 #35	HAPLN1 (ENSPTIG00000015518) #37	EDIL3 (ENSPTIG00000013147)	COX7C (ENSPTIG00000012097)	RASA1 (ENSPTIG00000001406)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000156640 #8	ENSGT00950000183010.a.a.a.b.b	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000161069.h	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00950000184259	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT01000000215143	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k.f
lion	MODERN SPECIES		HOMER1 (ENSPLOG00000000572) #7	TENT2 (ENSPLOG00000000530) #8	ENSPLOG00000000504	CMYA5 (ENSPLOG00000000485) #9	MTX3 (ENSPLOG00000000460) #11	THBS4 (ENSPLOG00000000412) #12	SERINC5 (ENSPLOG00000000355) #13	SPZ1 (ENSPLOG00000000337)	ENSPLOG00000000257	ZFYVE16 (ENSPLOG00000000241)	FAM151B (ENSPLOG00000000229) #16	ANKRD34B (ENSPLOG00000000219) #17	ENSPLOG00000000207 #18	MSH3 (ENSPLOG00000000131) #19	RASGRF2 (ENSPLOG00000000068) #21	CKMT2 (ENSPLOG00000000058) #22	ZCCHC9 (ENSPLOG00000000050) #23	ACOT12 (ENSPLOG00000000044) #24	SSBP2 (ENSPLOG00000000026) #25	ATG10 (ENSPLOG00000014220) #26	ENSPLOG00000014144 #28	ENSPLOG00000014059 #29	ENSPLOG00000013980 #33	XRCC4 (ENSPLOG00000013925) #34	ENSPLOG00000013906	VCAN (ENSPLOG00000013768) #35	HAPLN1 (ENSPLOG00000013633) #37	EDIL3 (ENSPLOG00000013439)	ENSPLOG00000013409	COX7C (ENSPLOG00000013360)	RASA1 (ENSPLOG00000013077)
leopard	MODERN SPECIES	40	ENSPPRG00000018657	CMYA5 (ENSPPRG00000010137) #9	MTX3 (ENSPPRG00000010541) #11	ENSPPRG00000010693 #11	THBS4 (ENSPPRG00000011385) #12	SERINC5 (ENSPPRG00000012240) #13	SPZ1 (ENSPPRG00000019097)	ZFYVE16 (ENSPPRG00000012892)	FAM151B (ENSPPRG00000013219) #16	ANKRD34B (ENSPPRG00000019199) #17	ENSPPRG00000014559	ENSPPRG00000015793 #18	MSH3 (ENSPPRG00000018081) #19	ENSPPRG00000019187	RASGRF2 (ENSPPRG00000024375) #21	CKMT2 (ENSPPRG00000023587) #22	ZCCHC9 (ENSPPRG00000023474) #23	ACOT12 (ENSPPRG00000022908) #24	SSBP2 (ENSPPRG00000004684) #25	ATG10 (ENSPPRG00000005547) #26	ENSPPRG00000005949	RPS23 (ENSPPRG00000006877) #28	ENSPPRG00000007261 #29	ENSPPRG00000007337	ENSPPRG00000008129 #33	XRCC4 (ENSPPRG00000008800) #34	ENSPPRG00000010678 #35	HAPLN1 (ENSPPRG00000011520) #37	EDIL3 (ENSPPRG00000012668)	ENSPPRG00000013140	COX7C (ENSPPRG00000013235)
Cat	MODERN SPECIES		BHMT (ENSFCAG00000040239)	JMY (ENSFCAG00000025959)	HOMER1 (ENSFCAG00000015755) #7	TENT2 (ENSFCAG00000027560) #8	CMYA5 (ENSFCAG00000000223) #9	MTX3 (ENSFCAG00000003877) #11	THBS4 (ENSFCAG00000003879) #12	SERINC5 (ENSFCAG00000003881) #13	SPZ1 (ENSFCAG00000043127)	ZFYVE16 (ENSFCAG00000025974)	FAM151B (ENSFCAG00000042765) #16	ANKRD34B (ENSFCAG00000028474) #17	ENSFCAG00000026745 #18	MSH3 (ENSFCAG00000005686) #19	RASGRF2 (ENSFCAG00000022975) #21	CKMT2 (ENSFCAG00000004820) #22	ZCCHC9 (ENSFCAG00000033419) #23	ACOT12 (ENSFCAG00000009827) #24	SSBP2 (ENSFCAG00000011841) #25	ATG10 (ENSFCAG00000036397) #26	ENSFCAG00000022315	RPS23 (ENSFCAG00000008839) #28	ENSFCAG00000046011 #29	ENSFCAG00000045423 #33	XRCC4 (ENSFCAG00000029944) #34	VCAN (ENSFCAG00000023191) #35	HAPLN1 (ENSFCAG00000037432) #37	EDIL3 (ENSFCAG00000002497)	ENSFCAG00000050071	ENSFCAG00000022528	COX7C (ENSFCAG00000034705)
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Equus	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000266343	ENSGT00550000074784.a.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Horse	MODERN SPECIES	5	HOMER1 (ENSECAG00000013350) #7	TENT2 (ENSECAG00000012698) #8	CMYA5 (ENSECAG00000034911) #9	MTX3 (ENSECAG00000008541) #11	THBS4 (ENSECAG00000019665) #12	SERINC5 (ENSECAG00000016315) #13	ENSECAG00000046435	SPZ1 (ENSECAG00000005453)	ZFYVE16 (ENSECAG00000013918)	ENSECAG00000056306	FAM151B (ENSECAG00000013808) #16	ANKRD34B (ENSECAG00000004587) #17	ENSECAG00000026827 #18	MSH3 (ENSECAG00000009962) #19	RASGRF2 (ENSECAG00000000903) #21	CKMT2 (ENSECAG00000024226) #22	ZCCHC9 (ENSECAG00000023186) #23	ACOT12 (ENSECAG00000021196) #24	SSBP2 (ENSECAG00000020782) #25	ATG10 (ENSECAG00000026970) #26	ENSECAG00000035044	RPS23 (ENSECAG00000031968) ##28	ATP6AP1L (ENSECAG00000020318) #29	TMEM167A (ENSECAG00000026834) #33	XRCC4 (ENSECAG00000020269) #34	VCAN (ENSECAG00000019596) #35	HAPLN1 (ENSECAG00000016477) #37	EDIL3 (ENSECAG00000015388)	ENSECAG00000030211	CCNH (ENSECAG00000001853)	RASA1 (ENSECAG00000005203)
Donkey	MODERN SPECIES	29	JMY (ENSEASG00005001982)	HOMER1 (ENSEASG00005001988) #7	TENT2 (ENSEASG00005001993) #8	CMYA5 (ENSEASG00005037295) #9	MTX3 (ENSEASG00005002019) #11	THBS4 (ENSEASG00005002059) #12	SERINC5 (ENSEASG00005002191) #13	ENSEASG00005002196	SPZ1 (ENSEASG00005002199)	ZFYVE16 (ENSEASG00005002242)	FAM151B (ENSEASG00005002548) #16	ANKRD34B (ENSEASG00005002555) #17	ENSEASG00005002559 #18	MSH3 (ENSEASG00005002611) #19	RASGRF2 (ENSEASG00005002852) #21	CKMT2 (ENSEASG00005004085) #22	ZCCHC9 (ENSEASG00005004088) #23	ENSEASG00005032079 #24	SSBP2 (ENSEASG00005004112) #25	ENSEASG00005032025 ##25	ATG10 (ENSEASG00005004128) #26	ENSEASG00005004133	RPS23 (ENSEASG00005004140) ##28	ENSEASG00005004142 #29	TMEM167A (ENSEASG00005035583) #33	XRCC4 (ENSEASG00005004152) #34	VCAN (ENSEASG00005004200) #35	HAPLN1 (ENSEASG00005004559) #37	ENSEASG00005004576	ENSEASG00005024880	ENSEASG00005027718
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Greater horseshoe bat	MODERN SPECIES	25	JMY (ENSRFEG00010018821)	HOMER1 (ENSRFEG00010018881) #7	TENT2 (ENSRFEG00010019113) #8	CMYA5 (ENSRFEG00010019210) #9	MTX3 (ENSRFEG00010019245) #11	THBS4 (ENSRFEG00010019289) #12	SERINC5 (ENSRFEG00010019347) #13	SPZ1 (ENSRFEG00010019387)	ZFYVE16 (ENSRFEG00010019402)	FAM151B (ENSRFEG00010019442) #16	ANKRD34B (ENSRFEG00010019460) #17	ENSRFEG00010019476 #18	MSH3 (ENSRFEG00010019541) #19	ENSRFEG00010019598	RASGRF2 (ENSRFEG00010019626) #21	CKMT2 (ENSRFEG00010019715) #22	ACOT12 (ENSRFEG00010019759) #24	ZCCHC9 (ENSRFEG00010019818) #23	SSBP2 (ENSRFEG00010019877) #25	ENSRFEG00010019999	ATG10 (ENSRFEG00010020034) #26	RPS23 (ENSRFEG00010020074) #28	ENSRFEG00010020195 #29	ENSRFEG00010020237 #33	XRCC4 (ENSRFEG00010020264) #34	VCAN (ENSRFEG00010020306) #35	HAPLN1 (ENSRFEG00010020554) #37	EDIL3 (ENSRFEG00010020588)	ENSRFEG00010020631	ENSRFEG00010020642	RASA1 (ENSRFEG00010020705)
Microbat	MODERN SPECIES	937	HOMER1 (ENSMLUG00000010972) #7	TENT2 (ENSMLUG00000010990) #8	CMYA5 (ENSMLUG00000011014) #9	ENSMLUG00000026872	MTX3 (ENSMLUG00000013201) #11	THBS4 (ENSMLUG00000013206) #12	SERINC5 (ENSMLUG00000013220) #13	ENSMLUG00000029886	ENSMLUG00000014110	ENSMLUG00000002842 #15	FAM151B (ENSMLUG00000002854) #16	ANKRD34B (ENSMLUG00000002857) #17	ENSMLUG00000012200 #18	MSH3 (ENSMLUG00000001865) #19	RASGRF2 (ENSMLUG00000001877) #21	CKMT2 (ENSMLUG00000001884) #22	ZCCHC9 (ENSMLUG00000001886) #23	ACOT12 (ENSMLUG00000001890) #24	SSBP2 (ENSMLUG00000001897) #25	ATG10 (ENSMLUG00000013935) #26	ENSMLUG00000013939 ##28	ENSMLUG00000013943 #29	TMEM167A (ENSMLUG00000008924) #33	XRCC4 (ENSMLUG00000013754) #34	VCAN (ENSMLUG00000013757) #35	HAPLN1 (ENSMLUG00000001603) #37	EDIL3 (ENSMLUG00000011587)	ENSMLUG00000023755	ENSMLUG00000024030	COX7C (ENSMLUG00000026041)	ENSMLUG00000030456
Megabat	MODERN SPECIES	4087															RASGRF2 (ENSPVAG00000006544) #21	CKMT2 (ENSPVAG00000006550) #22	ACOT12 (ENSPVAG00000006553) #24
Atlantogenata	ANCESTRAL SPECIES		ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Afrotheria	ANCESTRAL SPECIES	12	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Afrotheria_a	ANCESTRAL SPECIES	12	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Elephant	MODERN SPECIES	526	TENT2 (ENSLAFG00000009190) #8	ENSLAFG00000029991 #9	ENSLAFG00000013738 #9	MTX3 (ENSLAFG00000001716) #11	THBS4 (ENSLAFG00000008818) #12	SERINC5 (ENSLAFG00000009830) #13	SPZ1 (ENSLAFG00000009834)	ENSLAFG00000017608 #15	FAM151B (ENSLAFG00000017619) #16	ANKRD34B (ENSLAFG00000010904) #17	ENSLAFG00000029028 #18	ENSLAFG00000015797 #19	ENSLAFG00000029236 #19	RASGRF2 (ENSLAFG00000011576) #21	ENSLAFG00000028067	CKMT2 (ENSLAFG00000011587) #22	ZCCHC9 (ENSLAFG00000012763) #23	ACOT12 (ENSLAFG00000012765) #24	SSBP2 (ENSLAFG00000012776) #25	ATG10 (ENSLAFG00000013183) #26	RPS23 (ENSLAFG00000031506) ##28	ENSLAFG00000013186 #29	TMEM167A (ENSLAFG00000009206) #33	ENSLAFG00000011855	VCAN (ENSLAFG00000002716) #35	HAPLN1 (ENSLAFG00000010769) #37	EDIL3 (ENSLAFG00000017730)	COX7C (ENSLAFG00000017502)	RASA1 (ENSLAFG00000011060)	CCNH (ENSLAFG00000028032)	TMEM161B (ENSLAFG00000011097)
Hyrax	MODERN SPECIES	2259																ENSPCAG00000001555 #22	ENSPCAG00000001605 #23
Tenrec	MODERN SPECIES	2773																CKMT2 (ENSETEG00000006852) #22
Xenarthra	ANCESTRAL SPECIES	259					ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25
Armadillo	MODERN SPECIES	1316			CMYA5 (ENSDNOG00000040392) #9	MTX3 (ENSDNOG00000043463) #11	THBS4 (ENSDNOG00000010496) #12	ENSDNOG00000019622 #13	ENSDNOG00000046018	ENSDNOG00000009003	ENSDNOG00000007096 #15	FAM151B (ENSDNOG00000043373) #16	ANKRD34B (ENSDNOG00000001607) #17	ENSDNOG00000043623	ENSDNOG00000038425 #18	MSH3 (ENSDNOG00000005942) #19	RASGRF2 (ENSDNOG00000002801) #21	CKMT2 (ENSDNOG00000016705) #22	ZCCHC9 (ENSDNOG00000016708) #23	ACOT12 (ENSDNOG00000009900) #24	SSBP2 (ENSDNOG00000009927) #25	ENSDNOG00000032637	ENSDNOG00000049021 #26	SERPINA12 (ENSDNOG00000014643)	SERPINA5 (ENSDNOG00000008676)	ENSDNOG00000036914	SERPINA3 (ENSDNOG00000009568)	GSC (ENSDNOG00000009490)
Sloth	MODERN SPECIES	2462																CKMT2 (ENSCHOG00000011868) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846
Opossum	MODERN SPECIES	2	C5orf34 (ENSMODG00000020277)	PAIP1 (ENSMODG00000020276)	NNT (ENSMODG00000020275)	FGF10 (ENSMODG00000050618)	MRPS30 (ENSMODG00000020268)	ENSMODG00000028526	ENSMODG00000020267	ENSMODG00000041626	ENSMODG00000027527	ENSMODG00000024858	ENSMODG00000020265	ANKRD34B (ENSMODG00000024859) #17	ENSMODG00000024860 #18	MSH3 (ENSMODG00000020264) #19	RASGRF2 (ENSMODG00000020263) #21	CKMT2 (ENSMODG00000020259) #22	ZCCHC9 (ENSMODG00000020261) #23	ACOT12 (ENSMODG00000020260) #24	SSBP2 (ENSMODG00000020258) #25	ENSMODG00000044614	ENSMODG00000024865 #26	RPS23 (ENSMODG00000020255) #28	ENSMODG00000037212 #29	ENSMODG00000040896 #33	XRCC4 (ENSMODG00000020253) #34	ENSMODG00000020252 #35	HAPLN1 (ENSMODG00000038203) #37	EDIL3 (ENSMODG00000020246)	ENSMODG00000045346	ENSMODG00000041038	ENSMODG00000024868
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a.b	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
koala	MODERN SPECIES	5					MARVELD2 (ENSPCIG00000033113)	RAD17 (ENSPCIG00000024704)	ENSPCIG00000034861	CCDC125 (ENSPCIG00000005071)	ENSPCIG00000013227 #15	FAM151B (ENSPCIG00000013226) #16	ENSPCIG00000032886 #17	ENSPCIG00000013220 #18	ENSPCIG00000013221	MSH3 (ENSPCIG00000013216) #19	RASGRF2 (ENSPCIG00000013213) #21	CKMT2 (ENSPCIG00000013210) #22	ZCCHC9 (ENSPCIG00000013208) #23	ACOT12 (ENSPCIG00000013207) #24	SSBP2 (ENSPCIG00000013205) #25	ATG10 (ENSPCIG00000029907) #26	ENSPCIG00000029909	RPS23 (ENSPCIG00000029904) #28	ENSPCIG00000029902 #28	ENSPCIG00000029901 #29	ENSPCIG00000029899	ENSPCIG00000029898	ENSPCIG00000032700 #33	XRCC4 (ENSPCIG00000029896) #34	ENSPCIG00000029893 #35	HAPLN1 (ENSPCIG00000007780) #37	EDIL3 (ENSPCIG00000006442)
Common wonbat	MODERN SPECIES	1013	CARTPT (ENSVURG00010018567)	MCCC2 (ENSVURG00010018561)	ENSVURG00010018525	ENSVURG00010018487	ENSVURG00010018462	OCLN (ENSVURG00010018447)	MARVELD2 (ENSVURG00010018433)	RAD17 (ENSVURG00010018414)	ENSVURG00010018403	CCDC125 (ENSVURG00010018389)	ENSVURG00010018375 #15	ANKRD34B (ENSVURG00010018370) #17	ENSVURG00010018365 #18	ENSVURG00010018314 #19	RASGRF2 (ENSVURG00010018013) #21	CKMT2 (ENSVURG00010017961) #22	ZCCHC9 (ENSVURG00010017952) #23	ACOT12 (ENSVURG00010017946) #24	SSBP2 (ENSVURG00010017922) #25	ENSVURG00010017901	ATG10 (ENSVURG00010017892) #26	ENSVURG00010017874 #28	ENSVURG00010017862 #33	XRCC4 (ENSVURG00010017856) #34	ENSVURG00010017848 #35	HAPLN1 (ENSVURG00010017842) #37	EDIL3 (ENSVURG00010017835)	ENSVURG00010017826	ENSVURG00010017815	ENSVURG00010017806	ENSVURG00010017797
Wallaby	MODERN SPECIES	3723																ENSMEUG00000012918 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000004707	ENSSHAG00000001107	ENSSHAG00000024555	ENSSHAG00000001499	ENSSHAG00000003043	ENSSHAG00000017367	MARVELD2 (ENSSHAG00000017250)	RAD17 (ENSSHAG00000015220)	ENSSHAG00000027892	ENSSHAG00000017082	ENSSHAG00000016920 #15	ENSSHAG00000026793 #17	ENSSHAG00000016538 #18	MSH3 (ENSSHAG00000016015) #19	RASGRF2 (ENSSHAG00000014847) #21	CKMT2 (ENSSHAG00000014606) #22	ZCCHC9 (ENSSHAG00000014504) #23	ACOT12 (ENSSHAG00000014213) #24	SSBP2 (ENSSHAG00000013397) #25	ENSSHAG00000008505 #26	ENSSHAG00000028481 #28	ENSSHAG00000008347 ##28	ENSSHAG00000030156	ENSSHAG00000007765 #29	TMEM167A (ENSSHAG00000029456) #33	XRCC4 (ENSSHAG00000009690) #34	ENSSHAG00000007330 #35	HAPLN1 (ENSSHAG00000022951) #37	EDIL3 (ENSSHAG00000005209)	ENSSHAG00000006286	COX7C (ENSSHAG00000026810)
Platypus	MODERN SPECIES		ENSOANG00000038950	ENSOANG00000043463	ENSOANG00000001626	ENSOANG00000001624	OCLN (ENSOANG00000001620)	MARVELD2 (ENSOANG00000001618)	RAD17 (ENSOANG00000001617)	AK6 (ENSOANG00000041106)	CCDC125 (ENSOANG00000045172)	ENSOANG00000001613 #15	FAM151B (ENSOANG00000001610) #16	ANKRD34B (ENSOANG00000001609) #17	ENSOANG00000001607 #18	MSH3 (ENSOANG00000001605) #19	RASGRF2 (ENSOANG00000001603) #21	CKMT2 (ENSOANG00000014771) #22	ZCCHC9 (ENSOANG00000014769) #23	ACOT12 (ENSOANG00000014768) #24	SSBP2 (ENSOANG00000014767) #25	ATG10 (ENSOANG00000020641) #26	ENSOANG00000031637 #29	TMEM167A (ENSOANG00000014766) #33	ENSOANG00000014765 #34	ENSOANG00000014761 #35	HAPLN1 (ENSOANG00000014760) #37	EDIL3 (ENSOANG00000014759)	ENSOANG00000048884	COX7C (ENSOANG00000014755)	RASA1 (ENSOANG00000014753)	CCNH (ENSOANG00000014752)	TMEM161B (ENSOANG00000011078)
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.b ##28	ENSGT01040000240833	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000154136	ENSGT00940000158144
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Laterata	ANCESTRAL SPECIES	8	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Common wall lizard	MODERN SPECIES	2	CARTPT (ENSPMRG00000010926)	MCCC2 (ENSPMRG00000010948)	ENSPMRG00000011058	ENSPMRG00000011064	ENSPMRG00000011084	ANAPC2 (ENSPMRG00000011121)	OCLN (ENSPMRG00000011125)	MARVELD2 (ENSPMRG00000011132)	RAD17 (ENSPMRG00000011152)	AK6 (ENSPMRG00000011213)	CCDC125 (ENSPMRG00000011219)	ENSPMRG00000011301 #15	FAM151B (ENSPMRG00000011449) #16	MSH3 (ENSPMRG00000011469) #19	RASGRF2 (ENSPMRG00000011673) #21	CKMT2 (ENSPMRG00000012410) #22	ZCCHC9 (ENSPMRG00000012418) #23	ACOT12 (ENSPMRG00000012439) #24	SSBP2 (ENSPMRG00000012480) #25	ATG10 (ENSPMRG00000012525) #26	ENSPMRG00000012528	ENSPMRG00000012529	RPS23 (ENSPMRG00000012532) #28	ENSPMRG00000012535 ##28	ENSPMRG00000012537	ENSPMRG00000012542 #29	TMEM167A (ENSPMRG00000012546) #33	XRCC4 (ENSPMRG00000012553) #34	ENSPMRG00000012564 #35	ENSPMRG00000012576 #35	ENSPMRG00000012606
Argentine black and white tegu	MODERN SPECIES	10	ENSSMRG00000006391	ENSSMRG00000006407	ENSSMRG00000006412	ENSSMRG00000006413	OCLN (ENSSMRG00000006420)	MARVELD2 (ENSSMRG00000006425)	RAD17 (ENSSMRG00000006429)	AK6 (ENSSMRG00000006443)	CCDC125 (ENSSMRG00000006448)	ENSSMRG00000006476 #15	FAM151B (ENSSMRG00000006499) #16	ANKRD34B (ENSSMRG00000006500) #17	ENSSMRG00000006501 #18	MSH3 (ENSSMRG00000006503) #19	RASGRF2 (ENSSMRG00000006530) #21	CKMT2 (ENSSMRG00000006550) #22	ZCCHC9 (ENSSMRG00000006556) #23	ENSSMRG00000006560	SSBP2 (ENSSMRG00000006585) #25	ENSSMRG00000006600	ATG10 (ENSSMRG00000006616) #26	RPS23 (ENSSMRG00000006623) #28	ENSSMRG00000006633	ENSSMRG00000006627	ENSSMRG00000006636 #29	TMEM167A (ENSSMRG00000006663) #33	XRCC4 (ENSSMRG00000006677) #34	VCAN (ENSSMRG00000006719) #35	HAPLN1 (ENSSMRG00000007276) #37	ENSSMRG00000007280	EDIL3 (ENSSMRG00000007329)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000240833	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00390000018086
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000161793.cb	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.b.a.a ##28	ENSGT00550000074784.b.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771.fb.a	ENSGT00940000155771.fb.b	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833.e	ENSGT00550000074784.b.a.a ##28	ENSGT00550000074784.b.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	7487																ENSLLTG00000008465 #22
Blue-lipped sea krait	MODERN SPECIES	2256																ENSLLTG00000002735 #22
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000161793.cb	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771.fb.a	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833.e	ENSGT00550000074784.b.a.a ##28	ENSGT00550000074784.b.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846
Mainland tiger snake	MODERN SPECIES	1					ENSNSUG00000004661	MARVELD2 (ENSNSUG00000004662)	RAD17 (ENSNSUG00000004663)	AK6 (ENSNSUG00000004664)	CCDC125 (ENSNSUG00000004665)	ENSNSUG00000004666 #15	FAM151B (ENSNSUG00000004667) #16	ANKRD34B (ENSNSUG00000004668) #17	ENSNSUG00000004669 #18	MSH3 (ENSNSUG00000004670) #19	RASGRF2 (ENSNSUG00000004672) #21	CKMT2 (ENSNSUG00000004674) #22	ZCCHC9 (ENSNSUG00000004677) #23	ENSNSUG00000004679	SSBP2 (ENSNSUG00000004681) #25	ATG10 (ENSNSUG00000004695) #26	ENSNSUG00000004696	ENSNSUG00000004701 ##28	ENSNSUG00000004706 #29	TMEM167A (ENSNSUG00000004709) #33	XRCC4 (ENSNSUG00000004725) #34	ENSNSUG00000004844 #35	HAPLN1 (ENSNSUG00000004848) #37	EDIL3 (ENSNSUG00000004852)	ENSNSUG00000004860	ENSNSUG00000004862	RASA1 (ENSNSUG00000004867)
Eastern brown snake	MODERN SPECIES	2	ENSPTXG00000000050	NAIP (ENSPTXG00000000077)	ENSPTXG00000000272	OCLN (ENSPTXG00000000287)	MARVELD2 (ENSPTXG00000000298)	RAD17 (ENSPTXG00000000320)	AK6 (ENSPTXG00000000337)	CCDC125 (ENSPTXG00000000386)	ENSPTXG00000000690 #15	FAM151B (ENSPTXG00000000697) #16	ANKRD34B (ENSPTXG00000000701) #17	ENSPTXG00000000704 #18	ENSPTXG00000000708 #19	ENSPTXG00000000711 #19	RASGRF2 (ENSPTXG00000000819) #21	CKMT2 (ENSPTXG00000004676) #22	ZCCHC9 (ENSPTXG00000004677) #23	ACOT12 (ENSPTXG00000004678) #24	SSBP2 (ENSPTXG00000004679) #25	ATG10 (ENSPTXG00000004680) #26	ENSPTXG00000004681	ENSPTXG00000004682 ##28	ENSPTXG00000004683 ##28	ENSPTXG00000004684	ENSPTXG00000004685 #29	ENSPTXG00000004686	TMEM167A (ENSPTXG00000004687) #33	XRCC4 (ENSPTXG00000004688) #34	ENSPTXG00000004708 #35	HAPLN1 (ENSPTXG00000004709) #37	EDIL3 (ENSPTXG00000004710)
Indian cobra	MODERN SPECIES	1	ENSNNAG00000002907	ENSNNAG00000002919	NAIP (ENSNNAG00000002888)	ENSNNAG00000002867	OCLN (ENSNNAG00000002861)	MARVELD2 (ENSNNAG00000002854)	RAD17 (ENSNNAG00000002826)	AK6 (ENSNNAG00000002813)	CCDC125 (ENSNNAG00000002811)	ENSNNAG00000002786 #15	FAM151B (ENSNNAG00000002773) #16	ANKRD34B (ENSNNAG00000002768) #17	ENSNNAG00000002758 #18	MSH3 (ENSNNAG00000002548) #19	RASGRF2 (ENSNNAG00000002418) #21	CKMT2 (ENSNNAG00000002396) #22	ZCCHC9 (ENSNNAG00000002384) #23	SSBP2 (ENSNNAG00000002360) #25	ATG10 (ENSNNAG00000002344) #26	ENSNNAG00000002336 ##28	ENSNNAG00000002327 ##28	ENSNNAG00000002308	ENSNNAG00000002292 #29	ENSNNAG00000002286	TMEM167A (ENSNNAG00000002280) #33	XRCC4 (ENSNNAG00000002227) #34	ENSNNAG00000002196 #35	HAPLN1 (ENSNNAG00000002181) #37	EDIL3 (ENSNNAG00000002046)	ENSNNAG00000002013	RASA1 (ENSNNAG00000001568)
Lizard	MODERN SPECIES	1	ENSACAG00000010086	ENSACAG00000010109	OCLN (ENSACAG00000022344)	MARVELD2 (ENSACAG00000036496)	RAD17 (ENSACAG00000010254)	AK6 (ENSACAG00000035482)	CCDC125 (ENSACAG00000010353)	ENSACAG00000010379 #15	FAM151B (ENSACAG00000010503) #16	ENSACAG00000037201	ENSACAG00000010508 #18	ENSACAG00000045096	MSH3 (ENSACAG00000010533) #19	ENSACAG00000038186	RASGRF2 (ENSACAG00000010696) #21	CKMT2 (ENSACAG00000010857) #22	ZCCHC9 (ENSACAG00000010965) #23	ACOT12 (ENSACAG00000010998) #24	SSBP2 (ENSACAG00000029227) #25	ENSACAG00000045454	ATG10 (ENSACAG00000038343) #26	ENSACAG00000035602	RPS23 (ENSACAG00000044983) #28	ENSACAG00000011136	ENSACAG00000037915 #29	TMEM167A (ENSACAG00000011153) #33	XRCC4 (ENSACAG00000011160) #34	ENSACAG00000037657	VCAN (ENSACAG00000011195) #35	ENSACAG00000037910	HAPLN1 (ENSACAG00000011432) #37
tuatara	MODERN SPECIES	253															RASGRF2 (ENSSPUG00000004493) #21	CKMT2 (ENSSPUG00000004562) #22	ZCCHC9 (ENSSPUG00000004588) #23	ACOT12 (ENSSPUG00000004601) #24	SSBP2 (ENSSPUG00000004621) #25	ENSSPUG00000004635	ENSSPUG00000004644	ATG10 (ENSSPUG00000004666) #26	RPS23 (ENSSPUG00000004682) #28	ENSSPUG00000004697 ##28	ENSSPUG00000004701 #29	ENSSPUG00000004713 #33	XRCC4 (ENSSPUG00000004715) #34	ENSSPUG00000004729 #35	ENSSPUG00000004789 #35	HAPLN1 (ENSSPUG00000004798) #37
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.b ##28	ENSGT01040000240833	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.a.a #28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000240833	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Emydidae	ANCESTRAL SPECIES	7	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000240833	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Three-toed box turtle	MODERN SPECIES	29	ENSTMTG00000011637	ENSTMTG00000011654	ENSTMTG00000011664	ENSTMTG00000011681	OCLN (ENSTMTG00000011709)	MARVELD2 (ENSTMTG00000011733)	RAD17 (ENSTMTG00000011758)	AK6 (ENSTMTG00000011795)	CCDC125 (ENSTMTG00000011821)	ENSTMTG00000011862 #15	FAM151B (ENSTMTG00000011897) #16	ANKRD34B (ENSTMTG00000011931) #17	ENSTMTG00000011943 #18	MSH3 (ENSTMTG00000011972) #19	RASGRF2 (ENSTMTG00000012030) #21	CKMT2 (ENSTMTG00000012229) #22	ZCCHC9 (ENSTMTG00000012264) #23	ENSTMTG00000012276	SSBP2 (ENSTMTG00000012293) #25	ATG10 (ENSTMTG00000012339) #26	ENSTMTG00000012462 #28	ENSTMTG00000012480 #29	ENSTMTG00000012494	TMEM167A (ENSTMTG00000012521) #33	XRCC4 (ENSTMTG00000012541) #34	ENSTMTG00000012555 #35	ENSTMTG00000012578 #35	HAPLN1 (ENSTMTG00000012604) #37	EDIL3 (ENSTMTG00000012653)	COX7C (ENSTMTG00000012967)	RASA1 (ENSTMTG00000012988)
painted turtle	MODERN SPECIES	695	ENSCPBG00000010973	ENSCPBG00000010971	ENSCPBG00000010968	ENSCPBG00000010955	OCLN (ENSCPBG00000010945)	MARVELD2 (ENSCPBG00000010937)	RAD17 (ENSCPBG00000010919)	AK6 (ENSCPBG00000010913)	CCDC125 (ENSCPBG00000010907)	ENSCPBG00000010899 #15	ANKRD34B (ENSCPBG00000010896) #17	FAM151B (ENSCPBG00000010885) #16	ENSCPBG00000010879 #18	MSH3 (ENSCPBG00000010853) #19	RASGRF2 (ENSCPBG00000010831) #21	CKMT2 (ENSCPBG00000010825) #22	ZCCHC9 (ENSCPBG00000010819) #23	ACOT12 (ENSCPBG00000010812) #24	SSBP2 (ENSCPBG00000010799) #25	ATG10 (ENSCPBG00000010761) #26	ENSCPBG00000010753	RPS23 (ENSCPBG00000010751) #28	ENSCPBG00000010748	ENSCPBG00000010746 ##28	ENSCPBG00000010740 #29	TMEM167A (ENSCPBG00000010731) #33	XRCC4 (ENSCPBG00000010726) #34	VCAN (ENSCPBG00000010709) #35	HAPLN1 (ENSCPBG00000010699) #37	EDIL3 (ENSCPBG00000010684)	ENSCPBG00000010674
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01040000240833.b	ENSGT00550000074784.a.a #28	ENSGT01040000240833.a	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005001541	ENSGEVG00005001520	ENSGEVG00005001437	ENSGEVG00005001341	ENSGEVG00005001318	MARVELD2 (ENSGEVG00005001302)	RAD17 (ENSGEVG00005001202)	AK6 (ENSGEVG00005012470)	CCDC125 (ENSGEVG00005012441)	ENSGEVG00005012389 #15	FAM151B (ENSGEVG00005012364) #16	ANKRD34B (ENSGEVG00005012345) #17	ENSGEVG00005012322 #18	MSH3 (ENSGEVG00005012182) #19	RASGRF2 (ENSGEVG00005011594) #21	CKMT2 (ENSGEVG00005011478) #22	ZCCHC9 (ENSGEVG00005011427) #23	ACOT12 (ENSGEVG00005010989) #24	SSBP2 (ENSGEVG00005010855) #25	ATG10 (ENSGEVG00005010800) #26	ENSGEVG00005010746	ENSGEVG00005010649 ##28	RPS23 (ENSGEVG00005010591) #28	ENSGEVG00005010461	ENSGEVG00005010430 #29	TMEM167A (ENSGEVG00005010408) #33	XRCC4 (ENSGEVG00005010349) #34	ENSGEVG00005010286 #35	ENSGEVG00005010195 #35	HAPLN1 (ENSGEVG00005010002) #37	EDIL3 (ENSGEVG00005009290)
Abingdon island giant tortoise	MODERN SPECIES	111												ENSCABG00000019019 #18	MSH3 (ENSCABG00000019035) #19	RASGRF2 (ENSCABG00000019283) #21	ENSCABG00000019289	CKMT2 (ENSCABG00000019290) #22
Chinese turtle	MODERN SPECIES	1168	ENSPSIG00000014765	ENSPSIG00000014777	ENSPSIG00000014787	ENSPSIG00000014792	OCLN (ENSPSIG00000014805)	RAD17 (ENSPSIG00000014945)	AK6 (ENSPSIG00000015082)	CCDC125 (ENSPSIG00000015089)	ENSPSIG00000000799	ENSPSIG00000015107 #15	ANKRD34B (ENSPSIG00000000806) #17	ENSPSIG00000015226 #18	MSH3 (ENSPSIG00000015278) #19	ENSPSIG00000015542	RASGRF2 (ENSPSIG00000015555) #21	CKMT2 (ENSPSIG00000015748) #22	ZCCHC9 (ENSPSIG00000015854) #23	ACOT12 (ENSPSIG00000015897) #24	SSBP2 (ENSPSIG00000015983) #25	ATG10 (ENSPSIG00000015998) #26	RPS23 (ENSPSIG00000016006) #28	ENSPSIG00000016011 ##28	ENSPSIG00000016026 #29	TMEM167A (ENSPSIG00000016032) #33	XRCC4 (ENSPSIG00000016043) #34	VCAN (ENSPSIG00000016053) #35	HAPLN1 (ENSPSIG00000016121) #37	EDIL3 (ENSPSIG00000016123)
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Aves	ANCESTRAL SPECIES	4	ENSGT00940000155949	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Neognathae	ANCESTRAL SPECIES	19	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Anatidae	ANCESTRAL SPECIES	91	ENSGT00940000158156 #29	ENSGT00550000074784.a.a #28	ENSGT00390000000924 #26	ENSGT00950000183049.A #25	ENSGT00940000160328 #24	ENSGT00950000183041.C #23	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22
Duck	MODERN SPECIES	4281	ENSAPLG00000005367 #29	RPS23 (ENSAPLG00000023076) #28	ATG10 (ENSAPLG00000005440) #26	SSBP2 (ENSAPLG00000005451) #25	ACOT12 (ENSAPLG00000005659) #24	ZCCHC9 (ENSAPLG00000005968) #23	RAD17 (ENSAPLG00000006015)	AK6 (ENSAPLG00000024406)	CCDC125 (ENSAPLG00000006296)	ENSAPLG00000006547 #15	FAM151B (ENSAPLG00000026983) #16	ANKRD34B (ENSAPLG00000000654) #17	ENSAPLG00000007336 #18	MSH3 (ENSAPLG00000007056) #19	RASGRF2 (ENSAPLG00000006824) #21	CKMT2 (ENSAPLG00000006717) #22	ENSAPLG00000021795	ENSAPLG00000030349	ENSAPLG00000031127	ERAP1 (ENSAPLG00000006509)	ENSAPLG00000020005	ENSAPLG00000030752	PCSK1 (ENSAPLG00000005737)	ELL2 (ENSAPLG00000005474)	GLRX (ENSAPLG00000022742)	RHOBTB3 (ENSAPLG00000005201)	RFESD (ENSAPLG00000028000)	ARSK (ENSAPLG00000005029)	SKIC3 (ENSAPLG00000004474)	FAM81B (ENSAPLG00000004389)	ENSAPLG00000019072
Pink-footed goose	MODERN SPECIES	141	ENSABRG00000008899 #29	RPS23 (ENSABRG00000008885) #28	ATG10 (ENSABRG00000008857) #26	SSBP2 (ENSABRG00000008433) #25	ACOT12 (ENSABRG00000008346) #24	ENSABRG00000008304	RAD17 (ENSABRG00000008290)	AK6 (ENSABRG00000008278)	CCDC125 (ENSABRG00000008267)	ENSABRG00000008241 #15	FAM151B (ENSABRG00000008197) #16	ANKRD34B (ENSABRG00000008193) #17	ENSABRG00000008188 #18	MSH3 (ENSABRG00000008158) #19	RASGRF2 (ENSABRG00000008085) #21	CKMT2 (ENSABRG00000008063) #22
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.k.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01070000254325.a.b.a	ENSGT00390000018086
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.k.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01070000254325.a.b.a	ENSGT00390000018086
Chicken	MODERN SPECIES	131	ENSGALG00010006062	ENSGALG00010006520	ENSGALG00010007395	ENSGALG00010007380	ENSGALG00010007372	ENSGALG00010007355	RAD17 (ENSGALG00010007344)	AK6 (ENSGALG00010007322)	CCDC125 (ENSGALG00010007300)	ENSGALG00010007284 #15	FAM151B (ENSGALG00010007277) #16	ANKRD34B (ENSGALG00010007259) #17	DHFR (ENSGALG00010007224) #18	MSH3 (ENSGALG00010007217) #19	RASGRF2 (ENSGALG00010007166) #21	CKMT2 (ENSGALG00010007143) #22	ZCCHC9 (ENSGALG00010007097) #23	ACOT12 (ENSGALG00010006588) #24	SSBP2 (ENSGALG00010006575) #25	ATG10 (ENSGALG00010006223) #26	RPS23 (ENSGALG00010006178) ##28	ATP6AP1L (ENSGALG00010006121) #29	ENSGALG00010006923	TMEM167A (ENSGALG00010006851) #33	XRCC4 (ENSGALG00010006821) #34	VCAN (ENSGALG00010006739) #35	HAPLN1 (ENSGALG00010006730) #37	EDIL3 (ENSGALG00010006096)	ENSGALG00010005481	ENSGALG00010006257	COX7C (ENSGALG00010006252)
Turkey	MODERN SPECIES	1299	PLPPR1 (ENSMGAG00000004120)	MRPL50 (ENSMGAG00000016023)	ALDOB (ENSMGAG00000006711)	PGAP4 (ENSMGAG00000002985)	RNF20 (ENSMGAG00000001223)	GRIN3A (ENSMGAG00000001194)	RAD17 (ENSMGAG00000002053)	ENSMGAG00000001810	CCDC125 (ENSMGAG00000006043)	ENSMGAG00000010487 #15	FAM151B (ENSMGAG00000017722) #16	ANKRD34B (ENSMGAG00000016059) #17	ENSMGAG00000002698 #18	MSH3 (ENSMGAG00000008310) #19	RASGRF2 (ENSMGAG00000008333) #21	CKMT2 (ENSMGAG00000007813) #22	ZCCHC9 (ENSMGAG00000006841) #23	ACOT12 (ENSMGAG00000021238) #24	SSBP2 (ENSMGAG00000020044) #25	ENSMGAG00000020585	RPS23 (ENSMGAG00000016932) #28	ENSMGAG00000003952 #29	XRCC4 (ENSMGAG00000018677) #34	ENSMGAG00000017132 #35	ENSMGAG00000020009 #35	ENSMGAG00000020049 #35	HAPLN1 (ENSMGAG00000020012) #37	EDIL3 (ENSMGAG00000022807)	ENSMGAG00000008654	COX7C (ENSMGAG00000019652)	RASA1 (ENSMGAG00000008292)
Japanese quail	MODERN SPECIES	699	MRPL50 (ENSCJPG00005001258)	ALDOB (ENSCJPG00005001253)	PGAP4 (ENSCJPG00005001250)	RNF20 (ENSCJPG00005001239)	GRIN3A (ENSCJPG00005001233)	ENSCJPG00005001218	RAD17 (ENSCJPG00005001194)	AK6 (ENSCJPG00005001190)	CCDC125 (ENSCJPG00005001183)	ENSCJPG00005000738 #15	FAM151B (ENSCJPG00005000734) #16	ANKRD34B (ENSCJPG00005000731) #17	ENSCJPG00005000728 #18	MSH3 (ENSCJPG00005000723) #19	RASGRF2 (ENSCJPG00005000719) #21	CKMT2 (ENSCJPG00005000716) #22	ZCCHC9 (ENSCJPG00005000711) #23	ACOT12 (ENSCJPG00005000706) #24	SSBP2 (ENSCJPG00005000692) #25	ATG10 (ENSCJPG00005000682) #26	TMEM167A (ENSCJPG00005000681) #33	XRCC4 (ENSCJPG00005000577) #34	VCAN (ENSCJPG00005000555) #35	HAPLN1 (ENSCJPG00005000544) #37	EDIL3 (ENSCJPG00005000531)	RPS23 (ENSCJPG00005000525) #28	ENSCJPG00005000521 #29	ENSCJPG00005000513	COX7C (ENSCJPG00005000502)	RASA1 (ENSCJPG00005000488)	CCNH (ENSCJPG00005000482)
Neognathae_b	DUPLICATION
Neognathae_b	DUPLICATION
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Common canary	MODERN SPECIES	206																ENSSCAG00000004228 #22
Medium ground finch	MODERN SPECIES	474																ENSGFOG00000003945 #22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Kakapo	MODERN SPECIES	4	ENSSHBG00005010945	ENSSHBG00005011005	ENSSHBG00005011077	ENSSHBG00005011098	ENSSHBG00005011157	ENSSHBG00005011326	ENSSHBG00005000971	ENSSHBG00005000975	ENSSHBG00005000987	ENSSHBG00005000997	ENSSHBG00005001000	ENSSHBG00005001002	ENSSHBG00005001006	ENSSHBG00005001009	ENSSHBG00005001010	ENSSHBG00005001012 #22	ENSSHBG00005001015	ENSSHBG00005001017	ENSSHBG00005001020	ENSSHBG00005001023	ENSSHBG00005001025
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Medium ground finch	MODERN SPECIES	134						RAD17 (ENSGFOG00000004551)	AK6 (ENSGFOG00000004528)	ENSGFOG00000004485	ENSGFOG00000004471	ENSGFOG00000004455 #15	FAM151B (ENSGFOG00000004436) #16	ANKRD34B (ENSGFOG00000004424) #17	ENSGFOG00000004376 #18	MSH3 (ENSGFOG00000004209) #19	RASGRF2 (ENSGFOG00000004158) #21	ENSGFOG00000004036 #22	ZCCHC9 (ENSGFOG00000004014) #23	ACOT12 (ENSGFOG00000003959) #24	SSBP2 (ENSGFOG00000003918) #25	ATG10 (ENSGFOG00000003901) #26	ENSGFOG00000003887	RPS23 (ENSGFOG00000003868) ##28	ENSGFOG00000003856 #29	TMEM167A (ENSGFOG00000003850) #33	XRCC4 (ENSGFOG00000003823) #34	VCAN (ENSGFOG00000003782) #35	HAPLN1 (ENSGFOG00000003764) #37	EDIL3 (ENSGFOG00000003723)
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Passeriformes	ANCESTRAL SPECIES	44	ENSGT00940000163364	ENSGT00990000206046	ENSGT01060000248825	ENSGT00390000006970	ENSGT00990000204708	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Great tit	MODERN SPECIES	642	DCAF10 (ENSPMJG00000001551)	TRMT10B (ENSPMJG00000001524)	FRMPD1 (ENSPMJG00000001495)	TOMM5 (ENSPMJG00000001485)	EMC4 (ENSPMJG00000001467)	EXOSC5 (ENSPMJG00000001459)	RAD17 (ENSPMJG00000001446)	AK6 (ENSPMJG00000001441)	CCDC125 (ENSPMJG00000001412)	ENSPMJG00000001322 #15	FAM151B (ENSPMJG00000001314) #16	ANKRD34B (ENSPMJG00000001309) #17	ENSPMJG00000001288 #18	MSH3 (ENSPMJG00000000269) #19	RASGRF2 (ENSPMJG00000000142) #21	CKMT2 (ENSPMJG00000014299) #22	ZCCHC9 (ENSPMJG00000014297) #23	ACOT12 (ENSPMJG00000014296) #24	SSBP2 (ENSPMJG00000014294) #25	ATG10 (ENSPMJG00000014291) #26	ENSPMJG00000014290	ENSPMJG00000014289 ##28	ENSPMJG00000014288 #29	TMEM167A (ENSPMJG00000014283) #33	XRCC4 (ENSPMJG00000014280) #34	VCAN (ENSPMJG00000014262) #35	HAPLN1 (ENSPMJG00000014261) #37	EDIL3 (ENSPMJG00000014240)	COX7C (ENSPMJG00000014193)	MEGF10 (ENSPMJG00000014184)	PRRC1 (ENSPMJG00000014182)
Passeriformes_d	ANCESTRAL SPECIES	40	ENSGT00940000163364	ENSGT00990000206046	ENSGT01060000248825	ENSGT00390000006970	ENSGT00990000204708	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Passeriformes_g	ANCESTRAL SPECIES	48	ENSGT00530000063169.b.a	ENSGT00950000183035.b	ENSGT00940000163364	ENSGT01060000248825	ENSGT00390000006970	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Passeroidea	ANCESTRAL SPECIES	47	ENSGT00530000063169.b.a	ENSGT00950000183035.b	ENSGT00940000163364	ENSGT01060000248825	ENSGT00390000006970	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Zebra finch	MODERN SPECIES	104	FRMPD1 (ENSTGUG00000007140)	TOMM5 (ENSTGUG00000007138)	ENSTGUG00000021319	EMC4 (ENSTGUG00000007133)	EXOSC5 (ENSTGUG00000014136)	ENSTGUG00000026614	RAD17 (ENSTGUG00000017526)	AK6 (ENSTGUG00000028726)	CCDC125 (ENSTGUG00000017531)	ENSTGUG00000017532 #15	FAM151B (ENSTGUG00000024248) #16	ANKRD34B (ENSTGUG00000007120) #17	ENSTGUG00000007110 #18	MSH3 (ENSTGUG00000007066) #19	RASGRF2 (ENSTGUG00000007037) #21	CKMT2 (ENSTGUG00000007005) #22	ZCCHC9 (ENSTGUG00000006994) #23	ACOT12 (ENSTGUG00000006971) #24	SSBP2 (ENSTGUG00000006949) #25	ATG10 (ENSTGUG00000006943) #26	ENSTGUG00000006821	RPS23 (ENSTGUG00000017554) #28	ENSTGUG00000006935 #29	ENSTGUG00000021524	TMEM167A (ENSTGUG00000019292) #33	XRCC4 (ENSTGUG00000006911) #34	VCAN (ENSTGUG00000006883) #35	HAPLN1 (ENSTGUG00000006865) #37	EDIL3 (ENSTGUG00000006826)	COX7C (ENSTGUG00000006814)	ENSTGUG00000020662
Common canary	MODERN SPECIES	56	MELK (ENSSCAG00000009524)	PAX5 (ENSSCAG00000009511)	ZCCHC7 (ENSSCAG00000009494) ##23	ZBTB5 (ENSSCAG00000009485)	POLR1E (ENSSCAG00000009478)	DCAF10 (ENSSCAG00000009476)	RAD17 (ENSSCAG00000009425)	AK6 (ENSSCAG00000009418)	CCDC125 (ENSSCAG00000009413)	ENSSCAG00000009404 #15	FAM151B (ENSSCAG00000009398) #16	ENSSCAG00000009394 #17	ENSSCAG00000009393 #18	MSH3 (ENSSCAG00000009385) #19	RASGRF2 (ENSSCAG00000008895) #21	ENSSCAG00000008780 #22	ZCCHC9 (ENSSCAG00000008749) #23	ACOT12 (ENSSCAG00000008727) #24	SSBP2 (ENSSCAG00000008712) #25	ATG10 (ENSSCAG00000008706) #26	RPS23 (ENSSCAG00000008698) #28	ENSSCAG00000008690 #29	EDIL3 (ENSSCAG00000008613)	HAPLN1 (ENSSCAG00000008587) #37	VCAN (ENSSCAG00000008575) #35	XRCC4 (ENSSCAG00000008554) #34	TMEM167A (ENSSCAG00000008549) #33
Flycatcher	MODERN SPECIES	561	ENSFALG00000012909	ENSFALG00000012898	ENSFALG00000024727	ENSFALG00000012886	RAD17 (ENSFALG00000012863)	ENSFALG00000012854	CCDC125 (ENSFALG00000012850)	ENSFALG00000012844 #15	FAM151B (ENSFALG00000012837) #16	ANKRD34B (ENSFALG00000012833) #17	ENSFALG00000012822 #18	MSH3 (ENSFALG00000012814) #19	RASGRF2 (ENSFALG00000012784) #21	ZCCHC9 (ENSFALG00000012709) #23	ACOT12 (ENSFALG00000012700) #24	ENSFALG00000012745 #22	SSBP2 (ENSFALG00000012689) #25	ATG10 (ENSFALG00000012675) #26	RPS23 (ENSFALG00000012668) #28	ENSFALG00000012660 #29	TMEM167A (ENSFALG00000025743) #33	XRCC4 (ENSFALG00000012903) #34	VCAN (ENSFALG00000012891) #35	HAPLN1 (ENSFALG00000012880) #37	EDIL3 (ENSFALG00000023958)	ENSFALG00000027608	ENSFALG00000009108	ARSK (ENSFALG00000009095)	SKIC3 (ENSFALG00000009093)	MCTP1 (ENSFALG00000009081)	SLF1 (ENSFALG00000009078)
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.b ##28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634
Kakapo	MODERN SPECIES	19	NANS (ENSSHBG00005002674)	CLTA (ENSSHBG00005002638)	GNE (ENSSHBG00005002604)	ENSSHBG00005002587	ENSSHBG00005002541	RAD17 (ENSSHBG00005002493)	AK6 (ENSSHBG00005002469)	CCDC125 (ENSSHBG00005002431)	ZFYVE16 (ENSSHBG00005002389)	ENSSHBG00005002372 #15	FAM151B (ENSSHBG00005002341) #16	ENSSHBG00005002307 #18	ENSSHBG00005002294	MSH3 (ENSSHBG00005002186) #19	RASGRF2 (ENSSHBG00005002079) #21	ENSSHBG00005001986 #22	ZCCHC9 (ENSSHBG00005001941) #23	ACOT12 (ENSSHBG00005001923) #24	ENSSHBG00005001901	SSBP2 (ENSSHBG00005001883) #25	ATG10 (ENSSHBG00005001819) #26	ENSSHBG00005001802	RPS23 (ENSSHBG00005001774) ##28	ENSSHBG00005001734 #29	ENSSHBG00005001705	XRCC4 (ENSSHBG00005001575) #34	VCAN (ENSSHBG00005001512) #35	HAPLN1 (ENSSHBG00005001483) #37	ENSSHBG00005001456	EDIL3 (ENSSHBG00005001414)	COX7C (ENSSHBG00005004373)
Golden eagle	MODERN SPECIES	91	PLPPR1 (ENSACCG00020015068)	MRPL50 (ENSACCG00020015057)	ALDOB (ENSACCG00020015038)	PGAP4 (ENSACCG00020015021)	RNF20 (ENSACCG00020014919)	GRIN3A (ENSACCG00020014864)	RAD17 (ENSACCG00020014827)	AK6 (ENSACCG00020014804)	CCDC125 (ENSACCG00020014788)	ENSACCG00020014758 #15	FAM151B (ENSACCG00020014736) #16	ANKRD34B (ENSACCG00020014726) #17	ENSACCG00020014707 #18	MSH3 (ENSACCG00020014684) #19	RASGRF2 (ENSACCG00020014507) #21	CKMT2 (ENSACCG00020014280) #22	ZCCHC9 (ENSACCG00020014264) #23	ACOT12 (ENSACCG00020014240) #24	SSBP2 (ENSACCG00020014198) #25	ATG10 (ENSACCG00020014163) #26	ENSACCG00020014140 ##28	ENSACCG00020014125	ENSACCG00020014107 #29	TMEM167A (ENSACCG00020014094) #33	XRCC4 (ENSACCG00020014071) #34	VCAN (ENSACCG00020014055) #35	HAPLN1 (ENSACCG00020014033) #37	EDIL3 (ENSACCG00020013998)	COX7C (ENSACCG00020013971)	RASA1 (ENSACCG00020013845)	CCNH (ENSACCG00020013615)
African ostrich	MODERN SPECIES	1070	MCCC2 (ENSSCUG00000018915)	ENSSCUG00000018907	ENSSCUG00000018905	ENSSCUG00000018903	ENSSCUG00000018900	ENSSCUG00000018896	RAD17 (ENSSCUG00000018888)	AK6 (ENSSCUG00000018884)	CCDC125 (ENSSCUG00000018883)	ENSSCUG00000018879 #15	FAM151B (ENSSCUG00000018866) #16	ANKRD34B (ENSSCUG00000018864) #17	ENSSCUG00000018862 #18	MSH3 (ENSSCUG00000018855) #19	RASGRF2 (ENSSCUG00000018844) #21	CKMT2 (ENSSCUG00000018841) #22	ZCCHC9 (ENSSCUG00000018839) #23	ACOT12 (ENSSCUG00000018835) #24	SSBP2 (ENSSCUG00000018833) #25	ATG10 (ENSSCUG00000018827) #26	RPS23 (ENSSCUG00000018824) ##28	ENSSCUG00000018820 #29	TMEM167A (ENSSCUG00000018814) #33	XRCC4 (ENSSCUG00000018813) #34
Australian saltwater crocodile	MODERN SPECIES	29	ENSCPRG00005001212	ENSCPRG00005001219	ENSCPRG00005001238	ENSCPRG00005001278	ENSCPRG00005001294	MARVELD2 (ENSCPRG00005001318)	RAD17 (ENSCPRG00005001320)	AK6 (ENSCPRG00005001328)	CCDC125 (ENSCPRG00005001333)	ENSCPRG00005001388 #15	FAM151B (ENSCPRG00005001800) #16	ANKRD34B (ENSCPRG00005001804) #17	ENSCPRG00005001805 #18	MSH3 (ENSCPRG00005001827) #19	RASGRF2 (ENSCPRG00005001845) #21	CKMT2 (ENSCPRG00005001868) #22	ZCCHC9 (ENSCPRG00005001871) #23	ACOT12 (ENSCPRG00005001874) #24	SSBP2 (ENSCPRG00005001899) #25	ENSCPRG00005002064	ENSCPRG00005002080	ATG10 (ENSCPRG00005002089) #26	ENSCPRG00005002095	RPS23 (ENSCPRG00005002101) #28	ENSCPRG00005002107	ENSCPRG00005002110 ##28	ENSCPRG00005002117 #29	TMEM167A (ENSCPRG00005002127) #33	XRCC4 (ENSCPRG00005002138) #34	VCAN (ENSCPRG00005002150) #35	HAPLN1 (ENSCPRG00005002178) #37