Bilateria	DUPLICATION
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182772.B #22
Chordata	ANCESTRAL SPECIES	34																ENSGT00950000182772.B #22	ENSGT00390000016407
Vertebrata	ANCESTRAL SPECIES	1164															ENSGT00940000165661	ENSGT00950000182772.B #22
Gnathostomata	DUPLICATION
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a #22
Euteleostomi	ANCESTRAL SPECIES	1	ENSGT00940000155949	ENSGT00390000012762	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000165661	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b	ENSGT00940000157995
Sarcopterygii	ANCESTRAL SPECIES	1	ENSGT00940000155949	ENSGT00390000012762	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000165661	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00950000183173.E	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000165661	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00940000155186 #33	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00960000186730	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Mammalia	ANCESTRAL SPECIES	10	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00960000186730	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Theria	ANCESTRAL SPECIES	11	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00960000186730	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Primates	ANCESTRAL SPECIES	8	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086	ENSGT00940000155846
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00940000156300.d.k.b #10	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.b.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.q.b	ENSGT00940000155846	ENSGT00390000008634
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00940000156300.d.k.b #10	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.b.b #18	ENSGT00390000010283.`b.a.b.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.q.b	ENSGT00940000155846	ENSGT00390000008634
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00940000156300.d.k.b #10	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.b.b #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000161999.t.a.a.b.b.a #30	ENSGT01100000266943 #32	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00910000147249 #36	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.q.b
Capuchin	MODERN SPECIES	16	HOMER1 (ENSCCAG00000030989) #7	TENT2 (ENSCCAG00000025646) #8	CMYA5 (ENSCCAG00000019704) #9	ENSCCAG00000026990 #10	MTX3 (ENSCCAG00000031397) #11	THBS4 (ENSCCAG00000016677) #12	SERINC5 (ENSCCAG00000033262) #13	ENSCCAG00000021092 #14	ENSCCAG00000026046 #15	FAM151B (ENSCCAG00000023300) #16	ANKRD34B (ENSCCAG00000004805) #17	ENSCCAG00000023512 #18	MSH3 (ENSCCAG00000022745) #19	ENSCCAG00000016109 #20	RASGRF2 (ENSCCAG00000032681) #21	CKMT2 (ENSCCAG00000023905) #22	ZCCHC9 (ENSCCAG00000034082) #23	ACOT12 (ENSCCAG00000010251) #24	SSBP2 (ENSCCAG00000029743) #25	ATG10 (ENSCCAG00000021612) #26	ENSCCAG00000023908 #27	RPS23 (ENSCCAG00000022444) #28	ENSCCAG00000032614 #29	ENSCCAG00000032509 #30	ENSCCAG00000037444 #31	ENSCCAG00000035743 #32	TMEM167A (ENSCCAG00000021704) #33	XRCC4 (ENSCCAG00000021185) #34	VCAN (ENSCCAG00000026158) #35	ENSCCAG00000029740 #36	HAPLN1 (ENSCCAG00000023370) #37
Bolivian squirrel monkey	MODERN SPECIES	43	BHMT (ENSSBOG00000030724)	JMY (ENSSBOG00000001249)	ENSSBOG00000022728	HOMER1 (ENSSBOG00000030696) #7	TENT2 (ENSSBOG00000025595) #8	CMYA5 (ENSSBOG00000035707) #9	MTX3 (ENSSBOG00000030765) #11	THBS4 (ENSSBOG00000024309) #12	SERINC5 (ENSSBOG00000029391) #13	ZFYVE16 (ENSSBOG00000035944)	FAM151B (ENSSBOG00000027276) #16	ENSSBOG00000034508 ##18	ENSSBOG00000028670	MSH3 (ENSSBOG00000034934) #19	RASGRF2 (ENSSBOG00000032635) #21	CKMT2 (ENSSBOG00000022835) #22	ENSSBOG00000034293 #23	ACOT12 (ENSSBOG00000032766) #24	SSBP2 (ENSSBOG00000026483) #25	ENSSBOG00000032482	ATG10 (ENSSBOG00000032903) #26	RPS23 (ENSSBOG00000025991) #28	ENSSBOG00000019560 #29	ENSSBOG00000025673 #30	ENSSBOG00000034795	ENSSBOG00000035740	ENSSBOG00000033727 #32	TMEM167A (ENSSBOG00000031099) #33	XRCC4 (ENSSBOG00000033444) #34	VCAN (ENSSBOG00000030525) #35	HAPLN1 (ENSSBOG00000020151) #37
Marmoset	MODERN SPECIES	11	CMYA5 (ENSCJAG00000019709) #9	MTX3 (ENSCJAG00000019700) #11	ENSCJAG00000075688	THBS4 (ENSCJAG00000019641) #12	ENSCJAG00000076770	SERINC5 (ENSCJAG00000019619) #13	ZFYVE16 (ENSCJAG00000019584)	ENSCJAG00000077855	FAM151B (ENSCJAG00000052350) #16	ANKRD34B (ENSCJAG00000019567) #17	ENSCJAG00000084278	ENSCJAG00000019556 ##18	MSH3 (ENSCJAG00000019548) #19	ENSCJAG00000083586	RASGRF2 (ENSCJAG00000019512) #21	CKMT2 (ENSCJAG00000019489) #22	ZCCHC9 (ENSCJAG00000042621) #23	ENSCJAG00000072298	ACOT12 (ENSCJAG00000019453) #24	ENSCJAG00000072994	SSBP2 (ENSCJAG00000019418) #25	ENSCJAG00000062963	ENSCJAG00000072035	RPS23 (ENSCJAG00000011247) #28	ENSCJAG00000042632 #29	ENSCJAG00000077051 #33	XRCC4 (ENSCJAG00000011227) #34	VCAN (ENSCJAG00000011161) #35	ENSCJAG00000078201	HAPLN1 (ENSCJAG00000063471) #37	ENSCJAG00000085055
Mas night monkey	MODERN SPECIES	992														ENSANAG00000035978	RASGRF2 (ENSANAG00000028680) #21	CKMT2 (ENSANAG00000037627) #22	ZCCHC9 (ENSANAG00000021689) #23	ACOT12 (ENSANAG00000032859) #24	SSBP2 (ENSANAG00000021537) #25	ATG10 (ENSANAG00000029651) #26	RPS23 (ENSANAG00000019218) #28	ENSANAG00000033330 #29	ENSANAG00000027961 #30	ENSANAG00000035867 #32	TMEM167A (ENSANAG00000036200) #33	XRCC4 (ENSANAG00000032084) #34	VCAN (ENSANAG00000027105) #35	HAPLN1 (ENSANAG00000036107) #37	EDIL3 (ENSANAG00000024200)	COX7C (ENSANAG00000030476)	RASA1 (ENSANAG00000029874)
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086	ENSGT00940000155846
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n	ENSGT00940000155846	ENSGT00390000008634
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n	ENSGT00940000155846	ENSGT00390000008634
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n.b	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.a.a
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.n.b	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.a.a
Pan	ANCESTRAL SPECIES	21	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00390000012207.i.a	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00950000183087.A.a.b.b.g.f	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018509.a.n.b	ENSGT00390000018086.n.a.a
Bonobo	MODERN SPECIES	18	TENT2 (ENSPPAG00000035817) #8	CMYA5 (ENSPPAG00000036589) #9	MTX3 (ENSPPAG00000041435) #11	THBS4 (ENSPPAG00000034900) #12	SERINC5 (ENSPPAG00000039931) #13	SPZ1 (ENSPPAG00000035315)	ENSPPAG00000028959	ENSPPAG00000031592	ZFYVE16 (ENSPPAG00000039709)	ENSPPAG00000037730	FAM151B (ENSPPAG00000038755) #16	ANKRD34B (ENSPPAG00000013994) #17	DHFR (ENSPPAG00000027338) ##18	MSH3 (ENSPPAG00000033989) #19	RASGRF2 (ENSPPAG00000043533) #21	CKMT2 (ENSPPAG00000040035) #22	ZCCHC9 (ENSPPAG00000041281) #23	ACOT12 (ENSPPAG00000041212) #24	SSBP2 (ENSPPAG00000030611) #25	ENSPPAG00000039772	ENSPPAG00000004621	ATG10 (ENSPPAG00000033287) #26	RPS23 (ENSPPAG00000043006) #28	ENSPPAG00000038667 #29	TMEM167A (ENSPPAG00000043917) #33	XRCC4 (ENSPPAG00000040322) #34	ENSPPAG00000015511 #36	VCAN (ENSPPAG00000026050) #35	HAPLN1 (ENSPPAG00000037621) #37	EDIL3 (ENSPPAG00000034784)	ENSPPAG00000028873
Chimpanzee	MODERN SPECIES	18	TENT2 (ENSPTRG00000017028) #8	CMYA5 (ENSPTRG00000023686) #9	ENSPTRG00000039087	MTX3 (ENSPTRG00000051488) #11	THBS4 (ENSPTRG00000017031) #12	SERINC5 (ENSPTRG00000017032) #13	ENSPTRG00000042769	ENSPTRG00000040617	ZFYVE16 (ENSPTRG00000017038)	ENSPTRG00000051397	FAM151B (ENSPTRG00000017039) #16	ANKRD34B (ENSPTRG00000049125) #17	DHFR (ENSPTRG00000017042) ##18	MSH3 (ENSPTRG00000017043) #19	RASGRF2 (ENSPTRG00000017044) #21	CKMT2 (ENSPTRG00000024170) #22	ZCCHC9 (ENSPTRG00000017047) #23	ACOT12 (ENSPTRG00000017048) #24	SSBP2 (ENSPTRG00000017049) #25	ENSPTRG00000045633	ENSPTRG00000039784	ATG10 (ENSPTRG00000017050) #26	RPS23 (ENSPTRG00000017052) #28	ATP6AP1L (ENSPTRG00000050446) #29	TMEM167A (ENSPTRG00000044250) #33	ENSPTRG00000044846	XRCC4 (ENSPTRG00000017054) #34	ENSPTRG00000045929 #36	VCAN (ENSPTRG00000017055) #35	HAPLN1 (ENSPTRG00000017056) #37	EDIL3 (ENSPTRG00000017057)
Human	MODERN SPECIES	17	BHMT (ENSG00000145692)	JMY (ENSG00000152409)	HOMER1 (ENSG00000152413) #7	TENT2 (ENSG00000164329) #8	CMYA5 (ENSG00000164309) #9	MTX3 (ENSG00000177034) #11	THBS4 (ENSG00000113296) #12	SERINC5 (ENSG00000164300) #13	SPZ1 (ENSG00000164299)	ZFYVE16 (ENSG00000039319)	FAM151B (ENSG00000152380) #16	ANKRD34B (ENSG00000189127) #17	DHFR (ENSG00000228716) ##18	MSH3 (ENSG00000113318) #19	RASGRF2 (ENSG00000113319) #21	CKMT2 (ENSG00000131730) #22	ZCCHC9 (ENSG00000131732) #23	ACOT12 (ENSG00000172497) #24	SSBP2 (ENSG00000145687) #25	ATG10 (ENSG00000152348) #26	RPS23 (ENSG00000186468) #28	TMEM167A (ENSG00000174695) #33	XRCC4 (ENSG00000152422) #34	VCAN (ENSG00000038427) #35	HAPLN1 (ENSG00000145681) #37	EDIL3 (ENSG00000164176)	COX7C (ENSG00000127184)	RASA1 (ENSG00000145715)	CCNH (ENSG00000134480)	TMEM161B (ENSG00000164180)	MEF2C (ENSG00000081189)
Gorilla	MODERN SPECIES	18	NCOR1 (ENSGGOG00000001651)	ENSGGOG00000003741	ENSGGOG00000001647	ZSWIM7 (ENSGGOG00000001645)	ADORA2B (ENSGGOG00000001644)	ENSGGOG00000025621	ENSGGOG00000038552	TBC1D26 (ENSGGOG00000015907)	ENSGGOG00000040126	ENSGGOG00000023654	TRIM16 (ENSGGOG00000009625)	ENSGGOG00000039029	DHFR (ENSGGOG00000022366) ##18	MSH3 (ENSGGOG00000008712) #19	RASGRF2 (ENSGGOG00000006976) #21	CKMT2 (ENSGGOG00000005929) #22	ZCCHC9 (ENSGGOG00000013790) #23	ACOT12 (ENSGGOG00000009718) #24	SSBP2 (ENSGGOG00000026863) #25	ENSGGOG00000025646	ATG10 (ENSGGOG00000013109) #26	ENSGGOG00000026751	RPS23 (ENSGGOG00000025014) #28	ENSGGOG00000013925 #29	TMEM167A (ENSGGOG00000042218) #33	XRCC4 (ENSGGOG00000005197) #34	ENSGGOG00000040035	VCAN (ENSGGOG00000016068) #35	HAPLN1 (ENSGGOG00000028491) #37	ENSGGOG00000043369	EDIL3 (ENSGGOG00000025465)
Orangutan	MODERN SPECIES	18	ENSPPYG00000011137 #20	TENT2 (ENSPPYG00000015590) #8	CMYA5 (ENSPPYG00000015591) #9	MTX3 (ENSPPYG00000015592) #11	THBS4 (ENSPPYG00000015593) #12	SERINC5 (ENSPPYG00000015594) #13	SPZ1 (ENSPPYG00000015595)	ENSPPYG00000037278	ENSPPYG00000015596	ZFYVE16 (ENSPPYG00000015597)	FAM151B (ENSPPYG00000015598) #16	ANKRD34B (ENSPPYG00000015599) #17	DHFR (ENSPPYG00000036301) ##18	MSH3 (ENSPPYG00000015601) #19	RASGRF2 (ENSPPYG00000015602) #21	CKMT2 (ENSPPYG00000015603) #22	ZCCHC9 (ENSPPYG00000015604) #23	ENSPPYG00000015605 #24	SSBP2 (ENSPPYG00000015606) #25	ATG10 (ENSPPYG00000015607) #26	RPS23 (ENSPPYG00000030974) #28	ENSPPYG00000015609 #29	TMEM167A (ENSPPYG00000031892) #33	XRCC4 (ENSPPYG00000015612) #34	VCAN (ENSPPYG00000015613) #35	HAPLN1 (ENSPPYG00000015614) #37	EDIL3 (ENSPPYG00000015615)	COX7C (ENSPPYG00000015616)	ENSPPYG00000030583	RASA1 (ENSPPYG00000015618)	CCNH (ENSPPYG00000015619)
Gibbon	MODERN SPECIES	11	CMYA5 (ENSNLEG00000012895) #9	ENSNLEG00000012915 #11	THBS4 (ENSNLEG00000012916) #12	SERINC5 (ENSNLEG00000012931) #13	ENSNLEG00000012943	SPZ1 (ENSNLEG00000018597)	ENSNLEG00000033746	ENSNLEG00000018598	ZFYVE16 (ENSNLEG00000012945)	ENSNLEG00000034030	FAM151B (ENSNLEG00000012975) #16	ENSNLEG00000012989 ##18	MSH3 (ENSNLEG00000012994) #19	ENSNLEG00000030277	RASGRF2 (ENSNLEG00000013038) #21	CKMT2 (ENSNLEG00000013077) #22	ZCCHC9 (ENSNLEG00000029214) #23	ACOT12 (ENSNLEG00000013095) #24	SSBP2 (ENSNLEG00000013116) #25	ATG10 (ENSNLEG00000013189) #26	RPS23 (ENSNLEG00000013203) #28	ENSNLEG00000013214 #29	ENSNLEG00000027406	TMEM167A (ENSNLEG00000013231) #33	XRCC4 (ENSNLEG00000013239) #34	ENSNLEG00000032670	VCAN (ENSNLEG00000013300) #35	HAPLN1 (ENSNLEG00000013393) #37	ENSNLEG00000035592	EDIL3 (ENSNLEG00000013418)	ENSNLEG00000032525
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00390000012652.ab.b	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b	ENSGT00940000155846
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Vervet Monkey	MODERN SPECIES	23	HOMER1 (ENSCSAG00000015226) #7	ENSCSAG00000019419 #20	TENT2 (ENSCSAG00000015221) #8	ENSCSAG00000015214	CMYA5 (ENSCSAG00000015197) #9	MTX3 (ENSCSAG00000015189) #11	THBS4 (ENSCSAG00000015181) #12	SERINC5 (ENSCSAG00000015170) #13	SPZ1 (ENSCSAG00000019420)	ZFYVE16 (ENSCSAG00000015157)	FAM151B (ENSCSAG00000015145) #16	ANKRD34B (ENSCSAG00000019421) #17	DHFR (ENSCSAG00000015136) ##18	MSH3 (ENSCSAG00000015082) #19	RASGRF2 (ENSCSAG00000014982) #21	CKMT2 (ENSCSAG00000014966) #22	ENSCSAG00000014955 #23	ACOT12 (ENSCSAG00000014944) #24	SSBP2 (ENSCSAG00000014933) #25	ATG10 (ENSCSAG00000014925) #26	ENSCSAG00000014919 #28	ENSCSAG00000014915 #29	ENSCSAG00000019422	TMEM167A (ENSCSAG00000014909) #33	XRCC4 (ENSCSAG00000014902) #34	VCAN (ENSCSAG00000014887) #35	HAPLN1 (ENSCSAG00000014853) #37	ENSCSAG00000014846	EDIL3 (ENSCSAG00000014835)	ENSCSAG00000014822	ENSCSAG00000014810
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c.e.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325
Olive baboon	MODERN SPECIES	15	HOMER1 (ENSPANG00000029433) #7	TENT2 (ENSPANG00000017932) #8	CMYA5 (ENSPANG00000006609) #9	MTX3 (ENSPANG00000017204) #11	THBS4 (ENSPANG00000001778) #12	SERINC5 (ENSPANG00000015316) #13	ENSPANG00000047023	ENSPANG00000046950	ENSPANG00000006608	ENSPANG00000009347 #15	FAM151B (ENSPANG00000006073) #16	ANKRD34B (ENSPANG00000021025) #17	ENSPANG00000007428 ##18	MSH3 (ENSPANG00000017879) #19	RASGRF2 (ENSPANG00000010568) #21	CKMT2 (ENSPANG00000011809) #22	ZCCHC9 (ENSPANG00000013570) #23	ACOT12 (ENSPANG00000025089) #24	SSBP2 (ENSPANG00000023319) #25	ENSPANG00000041391	ATG10 (ENSPANG00000003860) #26	RPS23 (ENSPANG00000013597) #28	ENSPANG00000030703 #29	TMEM167A (ENSPANG00000049105) #33	XRCC4 (ENSPANG00000003281) #34	VCAN (ENSPANG00000000300) #35	HAPLN1 (ENSPANG00000043592) #37	EDIL3 (ENSPANG00000002875)	ENSPANG00000046816	ENSPANG00000038247	ENSPANG00000047004
Cercopithecinae_d	ANCESTRAL SPECIES	48	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c.e.a ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Drill	MODERN SPECIES	1180									ENSMLEG00000005751	ZFYVE16 (ENSMLEG00000038698)	FAM151B (ENSMLEG00000035702) #16	ANKRD34B (ENSMLEG00000019914) #17	ENSMLEG00000003057 ##18	MSH3 (ENSMLEG00000041689) #19	RASGRF2 (ENSMLEG00000032691) #21	CKMT2 (ENSMLEG00000043610) #22	ZCCHC9 (ENSMLEG00000038748) #23	ACOT12 (ENSMLEG00000000119) #24	SSBP2 (ENSMLEG00000033464) #25	ENSMLEG00000034602
Sooty mangabey	MODERN SPECIES	296	JMY (ENSCATG00000031558)	HOMER1 (ENSCATG00000041074) #7	TENT2 (ENSCATG00000038522) #8	CMYA5 (ENSCATG00000030915) #9	MTX3 (ENSCATG00000043566) #11	THBS4 (ENSCATG00000032042) #12	SERINC5 (ENSCATG00000043970) #13	ENSCATG00000030668	ENSCATG00000044681 #15	FAM151B (ENSCATG00000040732) #16	ENSCATG00000015204	ANKRD34B (ENSCATG00000015570) #17	ENSCATG00000042395 ##18	MSH3 (ENSCATG00000033755) #19	RASGRF2 (ENSCATG00000030532) #21	CKMT2 (ENSCATG00000035078) #22	ZCCHC9 (ENSCATG00000042586) #23	ACOT12 (ENSCATG00000041450) #24	SSBP2 (ENSCATG00000042579) #25	ATG10 (ENSCATG00000032132) #26	ENSCATG00000041062 ##28	ENSCATG00000040706 #29	TMEM167A (ENSCATG00000038227) #33	XRCC4 (ENSCATG00000031467) #34	ENSCATG00000045056 #36	VCAN (ENSCATG00000033955) #35	HAPLN1 (ENSCATG00000037967) #37	EDIL3 (ENSCATG00000036627)	ENSCATG00000035380	ENSCATG00000034062	RASA1 (ENSCATG00000014585)
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00910000147249 #36	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.o.b.a
Pig-tailed macaque	MODERN SPECIES	533	HOMER1 (ENSMNEG00000013996) #7	TENT2 (ENSMNEG00000039295) #8	CMYA5 (ENSMNEG00000037356) #9	MTX3 (ENSMNEG00000008284) #11	THBS4 (ENSMNEG00000027403) #12	SERINC5 (ENSMNEG00000030608) #13	ENSMNEG00000043833	ZFYVE16 (ENSMNEG00000040717)	ENSMNEG00000040805	FAM151B (ENSMNEG00000030974) #16	ENSMNEG00000013926	ANKRD34B (ENSMNEG00000006347) #17	ENSMNEG00000033103 ##18	MSH3 (ENSMNEG00000032256) #19	RASGRF2 (ENSMNEG00000029381) #21	CKMT2 (ENSMNEG00000029549) #22	ZCCHC9 (ENSMNEG00000040582) #23	ACOT12 (ENSMNEG00000044852) #24	SSBP2 (ENSMNEG00000029101) #25	ATG10 (ENSMNEG00000042013) #26	ENSMNEG00000034342 ##28	ENSMNEG00000008902 #29	TMEM167A (ENSMNEG00000041326) #33	XRCC4 (ENSMNEG00000045552) #34	ENSMNEG00000043712 #36	VCAN (ENSMNEG00000036869) #35	HAPLN1 (ENSMNEG00000030175) #37	EDIL3 (ENSMNEG00000042863)	ENSMNEG00000028341	ENSMNEG00000044013	RASA1 (ENSMNEG00000028470)
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00910000144152.b.b.b	ENSGT00530000063681.b.a #16	ENSGT00910000148532	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.c ##18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000004856.w.a.b	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.o.b.a	ENSGT00940000155846	ENSGT00390000008634
Rhesus	MODERN SPECIES	16	HOMER1 (ENSMMUG00000017057) #7	TENT2 (ENSMMUG00000020731) #8	CMYA5 (ENSMMUG00000020733) #9	MTX3 (ENSMMUG00000021104) #11	THBS4 (ENSMMUG00000003143) #12	SERINC5 (ENSMMUG00000023533) #13	ENSMMUG00000065072	ENSMMUG00000020845	ZFYVE16 (ENSMMUG00000023177)	FAM151B (ENSMMUG00000019459) #16	ENSMMUG00000062289	ANKRD34B (ENSMMUG00000019460) #17	ENSMMUG00000018283 ##18	MSH3 (ENSMMUG00000018284) #19	RASGRF2 (ENSMMUG00000039944) #21	CKMT2 (ENSMMUG00000006932) #22	ZCCHC9 (ENSMMUG00000020655) #23	ACOT12 (ENSMMUG00000020656) #24	SSBP2 (ENSMMUG00000017583) #25	ATG10 (ENSMMUG00000003577) #26	RPS23 (ENSMMUG00000003578) #28	ATP6AP1L (ENSMMUG00000029954) #29	TMEM167A (ENSMMUG00000046560) #33	XRCC4 (ENSMMUG00000064265) #34	VCAN (ENSMMUG00000011513) #35	HAPLN1 (ENSMMUG00000061282) #37	EDIL3 (ENSMMUG00000007661)	ENSMMUG00000051689	ENSMMUG00000039961	ENSMMUG00000063160	COX7C (ENSMMUG00000040409)
Crab-eating macaque	MODERN SPECIES	16	CMYA5 (ENSMFAG00000000649) #9	MTX3 (ENSMFAG00000003503) #11	THBS4 (ENSMFAG00000033394) #12	SERINC5 (ENSMFAG00000046004) #13	ENSMFAG00000050168	ENSMFAG00000024381	ZFYVE16 (ENSMFAG00000039223)	FAM151B (ENSMFAG00000042443) #16	ENSMFAG00000061609	ANKRD34B (ENSMFAG00000028493) #17	DHFR (ENSMFAG00000045536) ##18	MSH3 (ENSMFAG00000043794) #19	ENSMFAG00000061632	ENSMFAG00000060013	RASGRF2 (ENSMFAG00000003054) #21	CKMT2 (ENSMFAG00000000490) #22	ZCCHC9 (ENSMFAG00000001943) ##23	ACOT12 (ENSMFAG00000000202) #24	SSBP2 (ENSMFAG00000044245) #25	ATG10 (ENSMFAG00000031807) #26	RPS23 (ENSMFAG00000046092) #28	ENSMFAG00000045507 #29	ENSMFAG00000030373	TMEM167A (ENSMFAG00000064295) #33	XRCC4 (ENSMFAG00000013259) #34	VCAN (ENSMFAG00000032675) #35	HAPLN1 (ENSMFAG00000047220) #37	EDIL3 (ENSMFAG00000039875)	ENSMFAG00000059027	ENSMFAG00000048019	ENSMFAG00000063591
Rhinopithecus	ANCESTRAL SPECIES	211	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00890000139472.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.`b.a.a.a.b.a ##18	ENSGT00550000074949 #19	ENSGT00390000012652.ab.b	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C.c.a #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25
Golden snub-nosed monkey	MODERN SPECIES	2554			TENT2 (ENSRROG00000013336) #8	CMYA5 (ENSRROG00000027073) #9	MTX3 (ENSRROG00000023821) #11	THBS4 (ENSRROG00000041552) #12	SERINC5 (ENSRROG00000036945) #13	ENSRROG00000042238	ZFYVE16 (ENSRROG00000045718)	FAM151B (ENSRROG00000031446) #16	ANKRD34B (ENSRROG00000019488) #17	ENSRROG00000036245 ##18	MSH3 (ENSRROG00000031046) #19	ENSRROG00000034696	RASGRF2 (ENSRROG00000032432) #21	CKMT2 (ENSRROG00000028925) #22	ZCCHC9 (ENSRROG00000042005) #23	ACOT12 (ENSRROG00000044675) #24	SSBP2 (ENSRROG00000040398) #25	ATG10 (ENSRROG00000037859) #26	ENSRROG00000033570 #28	ENSRROG00000040597 #29
Black snub-nosed monkey	MODERN SPECIES	353	HOMER1 (ENSRBIG00000026863) #7	TENT2 (ENSRBIG00000028874) #8	CMYA5 (ENSRBIG00000029005) #9	MTX3 (ENSRBIG00000032362) #11	THBS4 (ENSRBIG00000031443) #12	SERINC5 (ENSRBIG00000030587) #13	SPZ1 (ENSRBIG00000034721)	ENSRBIG00000037215	ENSRBIG00000039434 #15	FAM151B (ENSRBIG00000029388) #16	ANKRD34B (ENSRBIG00000041216) #17	ENSRBIG00000040129 ##18	MSH3 (ENSRBIG00000005363) #19	ENSRBIG00000043367	RASGRF2 (ENSRBIG00000044390) #21	CKMT2 (ENSRBIG00000042648) #22	ZCCHC9 (ENSRBIG00000040955) #23	ACOT12 (ENSRBIG00000012524) #24	SSBP2 (ENSRBIG00000043959) #25
Tarsier	MODERN SPECIES	3454																CKMT2 (ENSTSYG00000012411) #22	ZCCHC9 (ENSTSYG00000012423) #23	ENSTSYG00000013327 #24	ENSTSYG00000031351	SSBP2 (ENSTSYG00000009099) #25	ENSTSYG00000034849	ENSTSYG00000032739
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Lemuriformes	ANCESTRAL SPECIES	37	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.u #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000013899.a.a.d	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Mouse lemur	MODERN SPECIES	3	BHMT (ENSMICG00000005487)	JMY (ENSMICG00000032384)	HOMER1 (ENSMICG00000012592) #7	TENT2 (ENSMICG00000038412) #8	CMYA5 (ENSMICG00000017061) #9	MTX3 (ENSMICG00000017066) #11	THBS4 (ENSMICG00000017069) #12	SERINC5 (ENSMICG00000017075) #13	ENSMICG00000016986	ZFYVE16 (ENSMICG00000002405)	FAM151B (ENSMICG00000002412) #16	ENSMICG00000027047 #18	MSH3 (ENSMICG00000016187) #19	ENSMICG00000036427	RASGRF2 (ENSMICG00000016229) #21	CKMT2 (ENSMICG00000016259) #22	ENSMICG00000029554 #23	ACOT12 (ENSMICG00000047986) #24	SSBP2 (ENSMICG00000035810) #25	ATG10 (ENSMICG00000032372) #26	RPS23 (ENSMICG00000034642) #28	ENSMICG00000013969 #29	ENSMICG00000033898	TMEM167A (ENSMICG00000009860) #33	XRCC4 (ENSMICG00000031093) #34	VCAN (ENSMICG00000035948) #35	HAPLN1 (ENSMICG00000034468) #37	EDIL3 (ENSMICG00000014682)	COX7C (ENSMICG00000007888)	ENSMICG00000043126	NUDT12 (ENSMICG00000036782)
Lemuriformes_a	ANCESTRAL SPECIES	43	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.u #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00390000013899.a.a.d	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Greater bamboo lemur	MODERN SPECIES	488	JMY (ENSPSMG00000022524)	HOMER1 (ENSPSMG00000022599) #7	TENT2 (ENSPSMG00000022674) #8	CMYA5 (ENSPSMG00000022711) #9	MTX3 (ENSPSMG00000022719) #11	THBS4 (ENSPSMG00000022760) #12	SERINC5 (ENSPSMG00000022792) #13	SPZ1 (ENSPSMG00000022808)	ZFYVE16 (ENSPSMG00000022828)	FAM151B (ENSPSMG00000022843) #16	ANKRD34B (ENSPSMG00000022855) #17	ENSPSMG00000022882 #18	MSH3 (ENSPSMG00000022936) #19	ENSPSMG00000022949	RASGRF2 (ENSPSMG00000022998) #21	CKMT2 (ENSPSMG00000023018) #22	ZCCHC9 (ENSPSMG00000023027) #23	ACOT12 (ENSPSMG00000023042) #24
Coquerels sifaka	MODERN SPECIES	999	BHMT (ENSPCOG00000000488)	JMY (ENSPCOG00000019253)	HOMER1 (ENSPCOG00000026991) #7	TENT2 (ENSPCOG00000000920) #8	CMYA5 (ENSPCOG00000025300) #9	MTX3 (ENSPCOG00000024492) #11	THBS4 (ENSPCOG00000026127) #12	ENSPCOG00000004503	SERINC5 (ENSPCOG00000020769) #13	ZFYVE16 (ENSPCOG00000023188)	FAM151B (ENSPCOG00000024049) #16	ENSPCOG00000024489 #18	ENSPCOG00000020321	MSH3 (ENSPCOG00000020396) #19	RASGRF2 (ENSPCOG00000014453) #21	CKMT2 (ENSPCOG00000008586) #22	ZCCHC9 (ENSPCOG00000018504) #23	ACOT12 (ENSPCOG00000025695) #24	SSBP2 (ENSPCOG00000022244) #25	ATG10 (ENSPCOG00000018560) #26	RPS23 (ENSPCOG00000026426) #28	ENSPCOG00000021069 #29	ENSPCOG00000019441	XRCC4 (ENSPCOG00000013394) #34
Bushbaby	MODERN SPECIES	132	BHMT (ENSOGAG00000006820)	JMY (ENSOGAG00000002137)	HOMER1 (ENSOGAG00000012453) #7	TENT2 (ENSOGAG00000012456) #8	CMYA5 (ENSOGAG00000012460) #9	MTX3 (ENSOGAG00000012479) #11	THBS4 (ENSOGAG00000015172) #12	ENSOGAG00000015178 #13	ENSOGAG00000028918	ENSOGAG00000005004 #15	FAM151B (ENSOGAG00000005006) #16	ANKRD34B (ENSOGAG00000003348) #17	ENSOGAG00000025320 #18	MSH3 (ENSOGAG00000011410) #19	RASGRF2 (ENSOGAG00000002537) #21	CKMT2 (ENSOGAG00000002541) #22	ENSOGAG00000002543 #23	ACOT12 (ENSOGAG00000002545) #24	SSBP2 (ENSOGAG00000002548) #25	ATG10 (ENSOGAG00000008161) #26	ENSOGAG00000008163 ##28	ENSOGAG00000008165 #29	TMEM167A (ENSOGAG00000009040) #33	XRCC4 (ENSOGAG00000009045) #34	VCAN (ENSOGAG00000034403) #35	HAPLN1 (ENSOGAG00000009053) #37	EDIL3 (ENSOGAG00000015620)	ENSOGAG00000032711	ENSOGAG00000029577	RASA1 (ENSOGAG00000000055)	CCNH (ENSOGAG00000010421)
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT01100000263873	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Tree shrew	MODERN SPECIES	4254														MSH3 (ENSTBEG00000007001) #19	RASGRF2 (ENSTBEG00000000481) #21	CKMT2 (ENSTBEG00000003202) #22	ACOT12 (ENSTBEG00000003903) #24
Glires	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT01100000263873	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Rabbit	MODERN SPECIES	2		JMY (ENSOCUG00000010050)	HOMER1 (ENSOCUG00000009680) #7	TENT2 (ENSOCUG00000009513) #8	CMYA5 (ENSOCUG00000001264) #9	MTX3 (ENSOCUG00000007868) #11	THBS4 (ENSOCUG00000009244) #12	SERINC5 (ENSOCUG00000004138) #13	ENSOCUG00000005090	ZFYVE16 (ENSOCUG00000001753)	FAM151B (ENSOCUG00000016328) #16	ENSOCUG00000023992 #17	ENSOCUG00000005127 #18	MSH3 (ENSOCUG00000016921) #19	RASGRF2 (ENSOCUG00000003533) #21	CKMT2 (ENSOCUG00000011211) #22	ZCCHC9 (ENSOCUG00000011215) #23	ACOT12 (ENSOCUG00000005358) #24	ENSOCUG00000005365 #25	ENSOCUG00000008736 #26	ENSOCUG00000010363 #28	ENSOCUG00000014110 #29	ENSOCUG00000009326 #33	XRCC4 (ENSOCUG00000015052) #34	VCAN (ENSOCUG00000002613) #35	HAPLN1 (ENSOCUG00000002630) #37	EDIL3 (ENSOCUG00000017338)	ENSOCUG00000029665	ENSOCUG00000029582	ENSOCUG00000002319	ENSOCUG00000006715
Pika	MODERN SPECIES	7758																CKMT2 (ENSOPRG00000010346) #22
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00390000010671	ENSGT01090000259995.a.a.a	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.a	ENSGT01090000260018.A.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00390000006224	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000020753	ENSHGLG00000020559	ENSHGLG00000034789	ENSHGLG00000039088	ENSHGLG00000020225	ENSHGLG00000012824	ENSHGLG00000016331 #13	ENSHGLG00000037044	ENSHGLG00000016542 #15	ENSHGLG00000048104	FAM151B (ENSHGLG00000009614) #16	ENSHGLG00000050164 #17	ENSHGLG00000047767 #18	ENSHGLG00000039829	ENSHGLG00000004494 #21	CKMT2 (ENSHGLG00000005442) #22	ZCCHC9 (ENSHGLG00000041209) #23	ACOT12 (ENSHGLG00000006134) #24	ENSHGLG00000006868 #25	ENSHGLG00000000693	ENSHGLG00000000673	ENSHGLG00000014689	ENSHGLG00000034341	RPL14 (ENSHGLG00000048756)	ENTPD3 (ENSHGLG00000015750)	EIF1B (ENSHGLG00000049723)	MYRIP (ENSHGLG00000033941)	ENSHGLG00000046086	ENSHGLG00000015869	ENSHGLG00000039683	ENSHGLG00000015915
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00390000018500.a	ENSGT00730000111648	ENSGT00390000010671	ENSGT01090000259995.a.a.a	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00390000006224	ENSGT01030000234623.a.b.a #13	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634
Guinea pig	MODERN SPECIES	1	ENSCPOG00000008672	ENSCPOG00000027191	ENSCPOG00000030470	ENSCPOG00000032930	ENSCPOG00000030586	ENSCPOG00000039505	OR2G6 (ENSCPOG00000007311)	CFAP144 (ENSCPOG00000032498)	SERINC5 (ENSCPOG00000006056) #13	ENSCPOG00000008352 #15	FAM151B (ENSCPOG00000036863) #16	ANKRD34B (ENSCPOG00000033954) #17	ENSCPOG00000020993 #18	MSH3 (ENSCPOG00000011122) #19	RASGRF2 (ENSCPOG00000006307) #21	CKMT2 (ENSCPOG00000003941) #22	ZCCHC9 (ENSCPOG00000003947) #23	ACOT12 (ENSCPOG00000009718) #24	SSBP2 (ENSCPOG00000001712) #25	ATG10 (ENSCPOG00000032098) #26	ENSCPOG00000022705	RPS23 (ENSCPOG00000037620) #28	ENSCPOG00000011131 #29	TMEM167A (ENSCPOG00000026186) #33	XRCC4 (ENSCPOG00000012258) #34	ENSCPOG00000039167 #35	HAPLN1 (ENSCPOG00000037148) #37	EDIL3 (ENSCPOG00000006986)	COX7C (ENSCPOG00000037322)	RASA1 (ENSCPOG00000007883)	CCNH (ENSCPOG00000007894)
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00940000163610	ENSGT00940000161175.d	ENSGT00390000018500.a	ENSGT00390000010671	ENSGT01090000259995.a.a.b.a.b.b	ENSGT01090000260018.A.a.a.b.b	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.a.a.b	ENSGT00390000006224	ENSGT01030000234623.a.b.a #13	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Degu	MODERN SPECIES	170	ENSODEG00000003801	OR2T27 (ENSODEG00000003825)	OR2T11 (ENSODEG00000003838)	ENSODEG00000003848	ENSODEG00000003866	ZNF692 (ENSODEG00000003897)	SH3BP5L (ENSODEG00000003939)	ENSODEG00000003965	OR2G6 (ENSODEG00000019021)	CFAP144 (ENSODEG00000003989)	SERINC5 (ENSODEG00000004021) #13	ENSODEG00000004058 #15	FAM151B (ENSODEG00000004092) #16	MSH3 (ENSODEG00000004134) #19	RASGRF2 (ENSODEG00000004227) #21	CKMT2 (ENSODEG00000004322) #22	ENSODEG00000004349 #23	ACOT12 (ENSODEG00000004907) #24	SSBP2 (ENSODEG00000004975) #25	ATG10 (ENSODEG00000005078) #26	RPS23 (ENSODEG00000005092) #28	ENSODEG00000005103 #29	ENSODEG00000005125 #33	XRCC4 (ENSODEG00000005147) #34	ENSODEG00000005159	ENSODEG00000005176 #35	HAPLN1 (ENSODEG00000005201) #37	EDIL3 (ENSODEG00000005260)	ENSODEG00000005359	ENSODEG00000005376	ENSODEG00000005383
Long-tailed chinchilla	MODERN SPECIES	125	ENSCLAG00000005904	ZNF692 (ENSCLAG00000005826)	SH3BP5L (ENSCLAG00000005774)	ENSCLAG00000005715	ENSCLAG00000017651	ENSCLAG00000005676	OR2G6 (ENSCLAG00000017632)	ENSCLAG00000005631	SERINC5 (ENSCLAG00000005561) #13	ENSCLAG00000005457 #15	FAM151B (ENSCLAG00000005400) #16	ANKRD34B (ENSCLAG00000017846) #17	ENSCLAG00000005365 #18	MSH3 (ENSCLAG00000006074) #19	RASGRF2 (ENSCLAG00000005490) #21	CKMT2 (ENSCLAG00000005343) #22	ZCCHC9 (ENSCLAG00000005289) #23	ACOT12 (ENSCLAG00000005180) #24	SSBP2 (ENSCLAG00000004986) #25	ATG10 (ENSCLAG00000004893) #26	ENSCLAG00000004838	Rps23 (ENSCLAG00000004798) #28	TMEM167A (ENSCLAG00000004734) #33	XRCC4 (ENSCLAG00000004677) #34	ENSCLAG00000004575 #35	HAPLN1 (ENSCLAG00000004483) #37	EDIL3 (ENSCLAG00000004305)	ENSCLAG00000004179	RASA1 (ENSCLAG00000004110)	CCNH (ENSCLAG00000004012)	TMEM161B (ENSCLAG00000003850)
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949.f #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Marmotini	ANCESTRAL SPECIES	23	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949.f #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Marmotini_b	ANCESTRAL SPECIES	89													ENSGT00390000010283 #18	ENSGT00550000074949.f #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00910000147325	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634
Squirrel	MODERN SPECIES	69													ENSSTOG00000028494 #18	MSH3 (ENSSTOG00000025220) #19	RASGRF2 (ENSSTOG00000001380) #21	CKMT2 (ENSSTOG00000001399) #22	ZCCHC9 (ENSSTOG00000001407) #23	ACOT12 (ENSSTOG00000001413) #24	SSBP2 (ENSSTOG00000001418) #25	ATG10 (ENSSTOG00000005212) #26	ENSSTOG00000000824 ##28	ENSSTOG00000005230 #29	ENSSTOG00000031235 #33	XRCC4 (ENSSTOG00000023468) #34	ENSSTOG00000026716 #35	HAPLN1 (ENSSTOG00000003875) #37	EDIL3 (ENSSTOG00000003893)	ENSSTOG00000022943	ENSSTOG00000023841	COX7C (ENSSTOG00000034413)	RASA1 (ENSSTOG00000000649)
Arctic ground squirrel	MODERN SPECIES	140													ENSUPAG00010006689 #19	ENSUPAG00010006712 #21	ENSUPAG00010006730 #21	CKMT2 (ENSUPAG00010006756) #22	ACOT12 (ENSUPAG00010006783) #24	SSBP2 (ENSUPAG00010006805) #25	ATG10 (ENSUPAG00010006861) #26	RPS23 (ENSUPAG00010006892) #28	ENSUPAG00010006903 #29	TMEM167A (ENSUPAG00010006916) #33	XRCC4 (ENSUPAG00010006926) #34	ENSUPAG00010006939	ENSUPAG00010006947 #35	HAPLN1 (ENSUPAG00010006988) #37	EDIL3 (ENSUPAG00010006995)	ENSUPAG00010007089
Alpin marmot	MODERN SPECIES	48	BHMT (ENSMMMG00000006936)	JMY (ENSMMMG00000006956)	HOMER1 (ENSMMMG00000006979) #7	TENT2 (ENSMMMG00000007231) #8	CMYA5 (ENSMMMG00000007285) #9	MTX3 (ENSMMMG00000007317) #11	THBS4 (ENSMMMG00000007323) #12	SERINC5 (ENSMMMG00000007357) #13	ENSMMMG00000007362	ENSMMMG00000007367 #15	FAM151B (ENSMMMG00000007697) #16	ANKRD34B (ENSMMMG00000007710) #17	ENSMMMG00000007718 #18	MSH3 (ENSMMMG00000007726) #19	ENSMMMG00000007796 #21	CKMT2 (ENSMMMG00000007828) #22	ZCCHC9 (ENSMMMG00000007846) #23	ACOT12 (ENSMMMG00000007863) #24	SSBP2 (ENSMMMG00000007897) #25	ATG10 (ENSMMMG00000007945) #26	RPS23 (ENSMMMG00000007953) #28	ENSMMMG00000007958	ENSMMMG00000007968 #29	ENSMMMG00000007986 #33	XRCC4 (ENSMMMG00000008004) #34	ENSMMMG00000008014 #35	HAPLN1 (ENSMMMG00000008103) #37	EDIL3 (ENSMMMG00000008149)	COX7C (ENSMMMG00000008226)	RASA1 (ENSMMMG00000008245)	CCNH (ENSMMMG00000008287)
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005013053	HOMER1 (ENSSVLG00005012639) #7	TENT2 (ENSSVLG00005012556) #8	CMYA5 (ENSSVLG00005012391) #9	MTX3 (ENSSVLG00005012299) #11	THBS4 (ENSSVLG00005011815) #12	SERINC5 (ENSSVLG00005011745) #13	ENSSVLG00005011728	ENSSVLG00005011673 #15	FAM151B (ENSSVLG00005011621) #16	ENSSVLG00005011570	ANKRD34B (ENSSVLG00005011548) #17	ENSSVLG00005011452 #18	MSH3 (ENSSVLG00005010940) #19	RASGRF2 (ENSSVLG00005010807) #21	CKMT2 (ENSSVLG00005010620) #22	ZCCHC9 (ENSSVLG00005010577) #23	ACOT12 (ENSSVLG00005010445) #24	SSBP2 (ENSSVLG00005009766) #25	ATG10 (ENSSVLG00005009563) #26	ENSSVLG00005009458 ##28	ENSSVLG00005009400 #29	ENSSVLG00005009361 #33	XRCC4 (ENSSVLG00005009326) #34	VCAN (ENSSVLG00005008932) #35	HAPLN1 (ENSSVLG00005008777) #37	EDIL3 (ENSSVLG00005008647)	ENSSVLG00005008592	RASA1 (ENSSVLG00005008223)	CCNH (ENSSVLG00005008091)	TMEM161B (ENSSVLG00005007974)
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00960000186730.a	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.c.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.c.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Chinese hamster chok1gshd	MODERN SPECIES	1	Jmy (ENSCGRG00001018071)	Homer1 (ENSCGRG00001013582) #7	Tent2 (ENSCGRG00001009951) #8	Cmya5 (ENSCGRG00001003968) #9	ENSCGRG00001008349	Mtx3 (ENSCGRG00001011412) #11	Thbs4 (ENSCGRG00001016664) #12	Serinc5 (ENSCGRG00001018453) #13	Spz1 (ENSCGRG00001008238)	Zfyve16 (ENSCGRG00001010507) #15	Fam151b (ENSCGRG00001014403) #16	Ankrd34b (ENSCGRG00001007953) #17	DHFR (ENSCGRG00001012555) #18	Msh3 (ENSCGRG00001012207) #19	Rasgrf2 (ENSCGRG00001001184) #21	Ckmt2 (ENSCGRG00001019134) #22	Zcchc9 (ENSCGRG00001018367) #23	Acot12 (ENSCGRG00001010985) #24	Ssbp2 (ENSCGRG00001010940) #25	Atg10 (ENSCGRG00001012356) #26	Rps23 (ENSCGRG00001005361) #28	Atp6ap1l (ENSCGRG00001003786) #29	Tmem167 (ENSCGRG00001013866) #33	Xrcc4 (ENSCGRG00001022340) #34	ENSCGRG00001014126 #35	Hapln1 (ENSCGRG00001024344) #37	Edil3 (ENSCGRG00001004897)	ENSCGRG00001002366	ENSCGRG00001000944	Cox7c (ENSCGRG00001016442)	ENSCGRG00001007486
Golden Hamster	MODERN SPECIES	620	Dmgdh (ENSMAUG00000011337)	Bhmt2 (ENSMAUG00000008057)	ENSMAUG00000004226	Jmy (ENSMAUG00000015175)	Homer1 (ENSMAUG00000011151) #7	Tent2 (ENSMAUG00000012442) #8	Mtx3 (ENSMAUG00000022165) #11	Thbs4 (ENSMAUG00000009316) #12	Serinc5 (ENSMAUG00000009651) #13	Zfyve16 (ENSMAUG00000001716) #15	Fam151b (ENSMAUG00000022170) #16	Ankrd34b (ENSMAUG00000015327) #17	ENSMAUG00000020170 #18	Msh3 (ENSMAUG00000021619) #19	Rasgrf2 (ENSMAUG00000016036) #21	Ckmt2 (ENSMAUG00000008773) #22	Zcchc9 (ENSMAUG00000022026) #23	Acot12 (ENSMAUG00000019809) #24	Ssbp2 (ENSMAUG00000010660) #25	Atg10 (ENSMAUG00000011026) #26	ENSMAUG00000011243 #28	Atp6ap1l (ENSMAUG00000001232) #29	ENSMAUG00000001668	Tmem167 (ENSMAUG00000000975) #33	Xrcc4 (ENSMAUG00000006508) #34	ENSMAUG00000011125 #35	Hapln1 (ENSMAUG00000008810) #37	ENSMAUG00000022083	Edil3 (ENSMAUG00000009286)	Cox7c (ENSMAUG00000005056)	Rasa1 (ENSMAUG00000011139)
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.c.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Northern American deer mouse	MODERN SPECIES	6	Jmy (ENSPEMG00000021018)	Homer1 (ENSPEMG00000016563) #7	Tent2 (ENSPEMG00000022209) #8	Cmya5 (ENSPEMG00000020808) #9	ENSPEMG00000028963	Mtx3 (ENSPEMG00000020867) #11	Thbs4 (ENSPEMG00000021194) #12	Serinc5 (ENSPEMG00000020960) #13	Spz1 (ENSPEMG00000007489)	Zfyve16 (ENSPEMG00000020714) #15	ENSPEMG00000024785	Ankrd34b (ENSPEMG00000016771) #17	Dhfr (ENSPEMG00000029212) #18	Msh3 (ENSPEMG00000000200) #19	ENSPEMG00000026083 #21	Ckmt2 (ENSPEMG00000011299) #22	Zcchc9 (ENSPEMG00000016614) #23	Acot12 (ENSPEMG00000024088) #24	Ssbp2 (ENSPEMG00000020873) #25	Atg10 (ENSPEMG00000015489) #26	Rps23 (ENSPEMG00000020618) #28	ENSPEMG00000030615	Atp6ap1l (ENSPEMG00000020422) #29	ENSPEMG00000031253	ENSPEMG00000029490	Tmem167 (ENSPEMG00000025163) #33	ENSPEMG00000024390	ENSPEMG00000025116	Xrcc4 (ENSPEMG00000020663) #34	Vcan (ENSPEMG00000021608) #35	Hapln1 (ENSPEMG00000020377) #37
Prairie vole	MODERN SPECIES	6	Bhmt2 (ENSMOCG00000018570)	ENSMOCG00000012797	Jmy (ENSMOCG00000000972)	Homer1 (ENSMOCG00000003233) #7	Tent2 (ENSMOCG00000013416) #8	Cmya5 (ENSMOCG00000020302) #9	Mtx3 (ENSMOCG00000017246) #11	Thbs4 (ENSMOCG00000017937) #12	Serinc5 (ENSMOCG00000017376) #13	Zfyve16 (ENSMOCG00000016512) #15	Fam151b (ENSMOCG00000012595) #16	Ankrd34b (ENSMOCG00000013232) #17	Dhfr (ENSMOCG00000014691) #18	Msh3 (ENSMOCG00000018492) #19	Rasgrf2 (ENSMOCG00000015751) #21	Ckmt2 (ENSMOCG00000003563) #22	Zcchc9 (ENSMOCG00000012433) #23	Acot12 (ENSMOCG00000015615) #24	Ssbp2 (ENSMOCG00000022756) #25	ENSMOCG00000011514	Atg10 (ENSMOCG00000014675) #26	ENSMOCG00000017478 #28	Atp6ap1l (ENSMOCG00000020532) #29	ENSMOCG00000002610	ENSMOCG00000010468	Tmem167 (ENSMOCG00000013381) #33	Xrcc4 (ENSMOCG00000015137) #34	ENSMOCG00000000187 #35	Hapln1 (ENSMOCG00000018799) #37	Edil3 (ENSMOCG00000001973)	ENSMOCG00000016800
Murinae	ANCESTRAL SPECIES	24	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Mus	ANCESTRAL SPECIES	22	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000165493	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000165493	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.x	ENSGT00940000155846	ENSGT00390000008634.c
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000003122.c.a.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000165493	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846	ENSGT00390000008634.c
Steppe mouse	MODERN SPECIES	3223															Rasgrf2 (ENSMSIG00000029126) #21	Ckmt2 (ENSMSIG00000030879) #22	Zcchc9 (ENSMSIG00000030885) #23	Acot12 (ENSMSIG00000030887) #24	ENSMSIG00000030893	ENSMSIG00000030895 #25	Atg10 (ENSMSIG00000030903) #26	ENSMSIG00000030909	Rps23 (ENSMSIG00000030911) #28	Atp6ap1l (ENSMSIG00000030916) #29	Tmem167 (ENSMSIG00000030926) #33	Xrcc4 (ENSMSIG00000030931) #34	Vcan (ENSMSIG00000030941) #35	Hapln1 (ENSMSIG00000030957) #37	Edil3 (ENSMSIG00000030959)
spretus	MODERN SPECIES	4	Jmy (MGP_SPRETEiJ_G0019664)	Homer1 (MGP_SPRETEiJ_G0019663) #7	Tent2 (MGP_SPRETEiJ_G0019662) #8	Cmya5 (MGP_SPRETEiJ_G0019661) #9	Mtx3 (MGP_SPRETEiJ_G0019660) #11	Thbs4 (MGP_SPRETEiJ_G0019659) #12	Serinc5 (MGP_SPRETEiJ_G0019658) #13	Spz1 (MGP_SPRETEiJ_G0019657)	Zfyve16 (MGP_SPRETEiJ_G0019656) #15	Fam151b (MGP_SPRETEiJ_G0019655) #16	Ankrd34b (MGP_SPRETEiJ_G0019654) #17	Dhfr (MGP_SPRETEiJ_G0019653) #18	MGP_SPRETEiJ_G0019652	Msh3 (MGP_SPRETEiJ_G0019651) #19	Rasgrf2 (MGP_SPRETEiJ_G0019650) #21	Ckmt2 (MGP_SPRETEiJ_G0019649) #22	Zcchc9 (MGP_SPRETEiJ_G0019648) #23	Acot12 (MGP_SPRETEiJ_G0019647) #24	Ssbp2 (MGP_SPRETEiJ_G0019646) #25	MGP_SPRETEiJ_G0019645	Atg10 (MGP_SPRETEiJ_G0019644) #26	Rps23 (MGP_SPRETEiJ_G0019643) #28	Atp6ap1l (MGP_SPRETEiJ_G0019642) #29	MGP_SPRETEiJ_G0019641	Tmem167 (MGP_SPRETEiJ_G0019640) #33	Xrcc4 (MGP_SPRETEiJ_G0019639) #34	Vcan (MGP_SPRETEiJ_G0019638) #35	Hapln1 (MGP_SPRETEiJ_G0019637) #37	Edil3 (MGP_SPRETEiJ_G0019636)	MGP_SPRETEiJ_G0019635	Rasa1 (MGP_SPRETEiJ_G0019634)
Mouse	MODERN SPECIES	4	Jmy (ENSMUSG00000021690)	Homer1 (ENSMUSG00000007617) #7	Tent2 (ENSMUSG00000042167) #8	Cmya5 (ENSMUSG00000047419) #9	Mtx3 (ENSMUSG00000021704) #11	Thbs4 (ENSMUSG00000021702) #12	Serinc5 (ENSMUSG00000021703) #13	Spz1 (ENSMUSG00000046957)	Zfyve16 (ENSMUSG00000021706) #15	Fam151b (ENSMUSG00000034334) #16	Ankrd34b (ENSMUSG00000045034) #17	Dhfr (ENSMUSG00000021707) #18	Gm20379 (ENSMUSG00000100622)	Msh3 (ENSMUSG00000014850) #19	Rasgrf2 (ENSMUSG00000021708) #21	Ckmt2 (ENSMUSG00000021622) #22	Zcchc9 (ENSMUSG00000021621) #23	Acot12 (ENSMUSG00000021620) #24	Ssbp2 (ENSMUSG00000003992) #25	Atg10 (ENSMUSG00000021619) #26	Rps23 (ENSMUSG00000049517) #28	Atp6ap1l (ENSMUSG00000078958) #29	Tmem167 (ENSMUSG00000012422) #33	Xrcc4 (ENSMUSG00000021615) #34	Vcan (ENSMUSG00000021614) #35	Hapln1 (ENSMUSG00000021613) #37	Edil3 (ENSMUSG00000034488)	Cox7c (ENSMUSG00000017778)	Rasa1 (ENSMUSG00000021549)	Ccnh (ENSMUSG00000021548)	Tmem161b (ENSMUSG00000035762)
Ryukyu mouse	MODERN SPECIES	4	MGP_CAROLIEiJ_G0018780	Jmy (MGP_CAROLIEiJ_G0018779)	Homer1 (MGP_CAROLIEiJ_G0018778) #7	Tent2 (MGP_CAROLIEiJ_G0018777) #8	MGP_CAROLIEiJ_G0018776 #9	Mtx3 (MGP_CAROLIEiJ_G0018775) #11	Thbs4 (MGP_CAROLIEiJ_G0018774) #12	Serinc5 (MGP_CAROLIEiJ_G0018773) #13	Spz1 (MGP_CAROLIEiJ_G0018772)	Zfyve16 (MGP_CAROLIEiJ_G0018771) #15	Fam151b (MGP_CAROLIEiJ_G0018770) #16	Ankrd34b (MGP_CAROLIEiJ_G0018769) #17	Dhfr (MGP_CAROLIEiJ_G0018768) #18	Msh3 (MGP_CAROLIEiJ_G0018767) #19	Rasgrf2 (MGP_CAROLIEiJ_G0018766) #21	Ckmt2 (MGP_CAROLIEiJ_G0018765) #22	Zcchc9 (MGP_CAROLIEiJ_G0018764) #23	Acot12 (MGP_CAROLIEiJ_G0018763) #24	Ssbp2 (MGP_CAROLIEiJ_G0018762) #25	Atg10 (MGP_CAROLIEiJ_G0018761) #26	Rps23 (MGP_CAROLIEiJ_G0018760) #28	Atp6ap1l (MGP_CAROLIEiJ_G0018759) #29	MGP_CAROLIEiJ_G0018758	Tmem167 (MGP_CAROLIEiJ_G0018757) #33	Xrcc4 (MGP_CAROLIEiJ_G0018756) #34	Vcan (MGP_CAROLIEiJ_G0018755) #35	Hapln1 (MGP_CAROLIEiJ_G0018754) #37	Edil3 (MGP_CAROLIEiJ_G0018753)	Cox7c (MGP_CAROLIEiJ_G0018752)	Rasa1 (MGP_CAROLIEiJ_G0018751)	Ccnh (MGP_CAROLIEiJ_G0018750)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0015859	Jmy (MGP_PahariEiJ_G0015858)	Homer1 (MGP_PahariEiJ_G0015857) #7	Tent2 (MGP_PahariEiJ_G0015856) #8	Cmya5 (MGP_PahariEiJ_G0015855) #9	Mtx3 (MGP_PahariEiJ_G0015854) #11	Thbs4 (MGP_PahariEiJ_G0015853) #12	Serinc5 (MGP_PahariEiJ_G0015852) #13	Spz1 (MGP_PahariEiJ_G0015851)	Zfyve16 (MGP_PahariEiJ_G0015850) #15	Fam151b (MGP_PahariEiJ_G0015849) #16	Ankrd34b (MGP_PahariEiJ_G0015848) #17	Dhfr (MGP_PahariEiJ_G0015847) #18	Msh3 (MGP_PahariEiJ_G0015846) #19	Rasgrf2 (MGP_PahariEiJ_G0015845) #21	Ckmt2 (MGP_PahariEiJ_G0015844) #22	Zcchc9 (MGP_PahariEiJ_G0015843) #23	Acot12 (MGP_PahariEiJ_G0015842) #24	Ssbp2 (MGP_PahariEiJ_G0015841) #25	Atg10 (MGP_PahariEiJ_G0015840) #26	Rps23 (MGP_PahariEiJ_G0015839) #28	Atp6ap1l (MGP_PahariEiJ_G0015838) #29	Vmn1r75 (MGP_PahariEiJ_G0015837)	Tmem167 (MGP_PahariEiJ_G0015836) #33	Xrcc4 (MGP_PahariEiJ_G0015835) #34	Vcan (MGP_PahariEiJ_G0015834) #35	Hapln1 (MGP_PahariEiJ_G0015833) #37	Edil3 (MGP_PahariEiJ_G0015832)	Cox7c (MGP_PahariEiJ_G0015831)	Rasa1 (MGP_PahariEiJ_G0015830)	Ccnh (MGP_PahariEiJ_G0015829)
Rat	MODERN SPECIES	11	Jmy (ENSRNOG00000050343)	Homer1 (ENSRNOG00000047014) #7	Tent2 (ENSRNOG00000012099) #8	Cmya5 (ENSRNOG00000023803) #9	Mtx3 (ENSRNOG00000023837) #11	Thbs4 (ENSRNOG00000012471) #12	Serinc5 (ENSRNOG00000024039) #13	Spz1 (ENSRNOG00000013050)	Zfyve16 (ENSRNOG00000013055) #15	Fam151b (ENSRNOG00000024136) #16	Ankrd34b (ENSRNOG00000040166) #17	Dhfr (ENSRNOG00000013521) #18	ENSRNOG00000069130	ENSRNOG00000064838	Rasgrf2 (ENSRNOG00000056151) #21	Ckmt2 (ENSRNOG00000055450) #22	Zcchc9 (ENSRNOG00000051682) #23	Acot12 (ENSRNOG00000061414) #24	Ssbp2 (ENSRNOG00000016213) #25	Atg10 (ENSRNOG00000016342) #26	Rps23 (ENSRNOG00000016580) ##28	Atp6ap1l (ENSRNOG00000040201) #29	Tmem167a (ENSRNOG00000016686) #33	Xrcc4 (ENSRNOG00000029966) #34	Vcan (ENSRNOG00000029212) #35	Hapln1 (ENSRNOG00000032002) #37	ENSRNOG00000062828	Edil3 (ENSRNOG00000033064)	ENSRNOG00000064811	Cox7c (ENSRNOG00000030237)	Rasa1 (ENSRNOG00000029185)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1658	ENSNGAG00000020657	Jmy (ENSNGAG00000019761)	Homer1 (ENSNGAG00000010741) #7	Tent2 (ENSNGAG00000014869) #8	Cmya5 (ENSNGAG00000019733) #9	Mtx3 (ENSNGAG00000017121) #11	Thbs4 (ENSNGAG00000003456) #12	Serinc5 (ENSNGAG00000000574) #13	Zfyve16 (ENSNGAG00000019708) #15	Fam151b (ENSNGAG00000005930) #16	Ankrd34b (ENSNGAG00000000386) #17	ENSNGAG00000019496	Dhfr (ENSNGAG00000018704) #18	Msh3 (ENSNGAG00000014298) #19	Rasgrf2 (ENSNGAG00000008843) #21	Ckmt2 (ENSNGAG00000020619) #22	Zcchc9 (ENSNGAG00000017736) #23	Acot12 (ENSNGAG00000009467) #24	Ssbp2 (ENSNGAG00000011787) #25	Atg10 (ENSNGAG00000011883) #26	Rps23 (ENSNGAG00000006354) #28	Atp6ap1l (ENSNGAG00000000435) #29	Tmem167 (ENSNGAG00000018278) #33	Xrcc4 (ENSNGAG00000013424) #34	ENSNGAG00000003748 #35	Hapln1 (ENSNGAG00000001309) #37	Edil3 (ENSNGAG00000011097)
Lesser Egyptian jerboa	MODERN SPECIES	45	ENSJJAG00000022436	Jmy (ENSJJAG00000015924)	Homer1 (ENSJJAG00000014750) #7	ENSJJAG00000012875	Tent2 (ENSJJAG00000015469) #8	Cmya5 (ENSJJAG00000020442) #9	Mtx3 (ENSJJAG00000022368) #11	Thbs4 (ENSJJAG00000014572) #12	Serinc5 (ENSJJAG00000011189) #13	Zfyve16 (ENSJJAG00000019491) #15	Fam151b (ENSJJAG00000012833) #16	Ankrd34b (ENSJJAG00000000619) #17	ENSJJAG00000011657 #18	Msh3 (ENSJJAG00000021941) #19	Rasgrf2 (ENSJJAG00000016070) #21	Ckmt2 (ENSJJAG00000016214) #22	Zcchc9 (ENSJJAG00000015479) #23	Acot12 (ENSJJAG00000010888) #24	Ssbp2 (ENSJJAG00000010960) #25	Atg10 (ENSJJAG00000013587) #26	Rps23 (ENSJJAG00000014219) #28	Atp6ap1l (ENSJJAG00000015522) #29	ENSJJAG00000019023 #33	Xrcc4 (ENSJJAG00000013678) #34	ENSJJAG00000017589 #35	Hapln1 (ENSJJAG00000012871) #37	Edil3 (ENSJJAG00000010032)	ENSJJAG00000012743	ENSJJAG00000023444	ENSJJAG00000001446	ENSJJAG00000003776
Kangaroo rat	MODERN SPECIES	347	Dmgdh (ENSDORG00000000991)	ENSDORG00000025667	Jmy (ENSDORG00000005525)	Homer1 (ENSDORG00000009374) #7	Tent2 (ENSDORG00000007850) #8	Cmya5 (ENSDORG00000026339) #9	Mtx3 (ENSDORG00000028356) #11	Thbs4 (ENSDORG00000005073) #12	Serinc5 (ENSDORG00000005075) #13	Zfyve16 (ENSDORG00000002451) #15	Fam151b (ENSDORG00000015177) #16	Ankrd34b (ENSDORG00000026971) #17	Dhfr (ENSDORG00000024821) #18	Msh3 (ENSDORG00000005509) #19	Rasgrf2 (ENSDORG00000001359) #21	Ckmt2 (ENSDORG00000015691) #22	Zcchc9 (ENSDORG00000001300) #23	Acot12 (ENSDORG00000001303) #24	Ssbp2 (ENSDORG00000001305) #25	ENSDORG00000024485	Atg10 (ENSDORG00000009893) #26	Rps23 (ENSDORG00000001813) #28	Atp6ap1l (ENSDORG00000025510) #29	Tmem167 (ENSDORG00000026989) #33	Xrcc4 (ENSDORG00000015883) #34	ENSDORG00000023517 #35	Hapln1 (ENSDORG00000015896) #37	ENSDORG00000026224	Edil3 (ENSDORG00000000456)	ENSDORG00000004968	Rasa1 (ENSDORG00000001435)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Eulipotyphla	ANCESTRAL SPECIES	1202															ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	1035															RASGRF2 (ENSSARG00000004273) #21	ENSSARG00000004354 #22
Common shrew	MODERN SPECIES	7001																ENSSARG00000006766 #22
Hedgehog	MODERN SPECIES	2855																ENSEEUG00000002390 #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.z
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z	ENSGT00940000155846	ENSGT00390000008634
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.z
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00940000155846	ENSGT00390000008634
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00550000074840.y.a.c	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00940000155846	ENSGT00390000008634
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00550000074840.y.a.c	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.s.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00940000155846	ENSGT00390000008634
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00550000074840.y.a.c	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000154612.n	ENSGT00940000155186.s.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a.c	ENSGT00940000155846
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00550000074840.y.a.c	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.k.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000154612.n	ENSGT00940000155186.s.b #33	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.y.a.c
Narwhal	MODERN SPECIES	298	JMY (ENSMMNG00015008440)	HOMER1 (ENSMMNG00015008534) #7	TENT2 (ENSMMNG00015008599) #8	ENSMMNG00015008614	CMYA5 (ENSMMNG00015008628) #9	MTX3 (ENSMMNG00015008650) #11	THBS4 (ENSMMNG00015008670) #12	SERINC5 (ENSMMNG00015008702) #13	SPZ1 (ENSMMNG00015008717)	ZFYVE16 (ENSMMNG00015008743)	FAM151B (ENSMMNG00015008794) #16	ANKRD34B (ENSMMNG00015008806) #17	ENSMMNG00015008817 #18	MSH3 (ENSMMNG00015008850) #19	RASGRF2 (ENSMMNG00015008907) #21	CKMT2 (ENSMMNG00015008945) #22	ZCCHC9 (ENSMMNG00015008963) #23	ACOT12 (ENSMMNG00015008974) #24	SSBP2 (ENSMMNG00015009022) #25	ATG10 (ENSMMNG00015009080) #26	ENSMMNG00015009087 #28	ENSMMNG00015009097 #29	ENSMMNG00015009107	ENSMMNG00015005197 #33	XRCC4 (ENSMMNG00015005213) #34	ENSMMNG00015005224	VCAN (ENSMMNG00015005267) #35	HAPLN1 (ENSMMNG00015005308) #37	ENSMMNG00015005323	EDIL3 (ENSMMNG00015005343)	ENSMMNG00015005384
Beluga whale	MODERN SPECIES	71	JMY (ENSDLEG00000014574)	HOMER1 (ENSDLEG00000014455) #7	ENSDLEG00000014436	PAPD4 (ENSDLEG00000014384) #8	CMYA5 (ENSDLEG00000014094) #9	MTX3 (ENSDLEG00000014026) #11	THBS4 (ENSDLEG00000013983) #12	SERINC5 (ENSDLEG00000013937) #13	SPZ1 (ENSDLEG00000013919)	ZFYVE16 (ENSDLEG00000013817)	FAM151B (ENSDLEG00000013793) #16	ANKRD34B (ENSDLEG00000013781) #17	DHFR (ENSDLEG00000013740) #18	MSH3 (ENSDLEG00000013710) #19	RASGRF2 (ENSDLEG00000013582) #21	CKMT2 (ENSDLEG00000013554) #22	ZCCHC9 (ENSDLEG00000013535) #23	ACOT12 (ENSDLEG00000013510) #24	SSBP2 (ENSDLEG00000013445) #25	ATG10 (ENSDLEG00000013394) #26	RPS23 (ENSDLEG00000013381) ##28	ENSDLEG00000013363	ENSDLEG00000013342 #33	XRCC4 (ENSDLEG00000013308) #34	VCAN (ENSDLEG00000013258) #35	HAPLN1 (ENSDLEG00000013237) #37	EDIL3 (ENSDLEG00000013171)	ENSDLEG00000013150	RASA1 (ENSDLEG00000013059)	CCNH (ENSDLEG00000013031)	TMEM161B (ENSDLEG00000012991)
Vaquita	MODERN SPECIES	14	JMY (ENSPSNG00000004120)	HOMER1 (ENSPSNG00000004084) #7	ENSPSNG00000004038	TENT2 (ENSPSNG00000004010) #8	CMYA5 (ENSPSNG00000003900) #9	MTX3 (ENSPSNG00000003883) #11	THBS4 (ENSPSNG00000003786) #12	SERINC5 (ENSPSNG00000003740) #13	SPZ1 (ENSPSNG00000003718)	ZFYVE16 (ENSPSNG00000003688)	FAM151B (ENSPSNG00000003651) #16	ANKRD34B (ENSPSNG00000003636) #17	ENSPSNG00000003617 #18	MSH3 (ENSPSNG00000003545) #19	RASGRF2 (ENSPSNG00000003476) #21	CKMT2 (ENSPSNG00000003429) #22	ZCCHC9 (ENSPSNG00000003398) #23	ACOT12 (ENSPSNG00000003353) #24	SSBP2 (ENSPSNG00000003238) #25	ATG10 (ENSPSNG00000003163) #26	RPS23 (ENSPSNG00000003143) #28	ENSPSNG00000003094	TMEM167A (ENSPSNG00000003071) #33	ENSPSNG00000003056	XRCC4 (ENSPSNG00000003042) #34	VCAN (ENSPSNG00000002974) #35	HAPLN1 (ENSPSNG00000002928) #37	ENSPSNG00000002915	EDIL3 (ENSPSNG00000002853)	ENSPSNG00000002806	RASA1 (ENSPSNG00000002638)
Dolphin	MODERN SPECIES	3487															RASGRF2 (ENSTTRG00000013785) #21	CKMT2 (ENSTTRG00000013794) #22	ZCCHC9 (ENSTTRG00000013796) #23	ACOT12 (ENSTTRG00000013797) #24
Sperm whale	MODERN SPECIES	19	BHMT (ENSPCTG00005003876)	JMY (ENSPCTG00005003899)	HOMER1 (ENSPCTG00005003925) #7	TENT2 (ENSPCTG00005003973) #8	ENSPCTG00005003995	CMYA5 (ENSPCTG00005004013) #9	MTX3 (ENSPCTG00005004032) #11	THBS4 (ENSPCTG00005004054) #12	SERINC5 (ENSPCTG00005004085) #13	ZFYVE16 (ENSPCTG00005004116)	FAM151B (ENSPCTG00005004159) #16	ANKRD34B (ENSPCTG00005004173) #17	DHFR (ENSPCTG00005004193) #18	MSH3 (ENSPCTG00005004305) #19	RASGRF2 (ENSPCTG00005004383) #21	MiCK (ENSPCTG00005004510) #22	ZCCHC9 (ENSPCTG00005004543) #23	ACOT12 (ENSPCTG00005004589) #24	SSBP2 (ENSPCTG00005004708) #25	ATG10 (ENSPCTG00005004830) #26	ENSPCTG00005004844	RPS23 (ENSPCTG00005004877) #28	ENSPCTG00005004898 #29	ENSPCTG00005004922 #33	XRCC4 (ENSPCTG00005004952) #34	VCAN (ENSPCTG00005005066) #35	HAPLN1 (ENSPCTG00005005652) #37	ENSPCTG00005005670	EDIL3 (ENSPCTG00005005744)	ENSPCTG00005005787	COX7C (ENSPCTG00005005822)
Blue whale	MODERN SPECIES	14	BHMT (ENSBMSG00010006489)	JMY (ENSBMSG00010006531)	HOMER1 (ENSBMSG00010006587) #7	ENSBMSG00010006619 #8	CMYA5 (ENSBMSG00010006643) #9	MTX3 (ENSBMSG00010006662) #11	THBS4 (ENSBMSG00010006679) #12	SERINC5 (ENSBMSG00010006731) #13	SPZ1 (ENSBMSG00010006746)	ENSBMSG00010006757 #15	FAM151B (ENSBMSG00010006772) #16	ANKRD34B (ENSBMSG00010006782) #17	ENSBMSG00010006789 #18	MSH3 (ENSBMSG00010006814) #19	RASGRF2 (ENSBMSG00010006843) #21	CKMT2 (ENSBMSG00010006888) #22	ENSBMSG00010006899 #23	ACOT12 (ENSBMSG00010006914) #24	SSBP2 (ENSBMSG00010006966) #25	ATG10 (ENSBMSG00010007011) #26	RPS23 (ENSBMSG00010007033) #28	ENSBMSG00010007076 #33	XRCC4 (ENSBMSG00010007092) #34	VCAN (ENSBMSG00010007115) #35	HAPLN1 (ENSBMSG00010007160) #37	ENSBMSG00010007170	EDIL3 (ENSBMSG00010007186)	ENSBMSG00010000023	RASA1 (ENSBMSG00010000084)	CCNH (ENSBMSG00010000119)	ENSBMSG00010000148
Pecora	ANCESTRAL SPECIES		ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00950000184894	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Yarkand deer	MODERN SPECIES	32	HMMR (ENSCHYG00000020571)	ENSCHYG00000020819	TENM2 (ENSCHYG00000000801)	WWC1 (ENSCHYG00000001396)	ENSCHYG00000001412	RARS1 (ENSCHYG00000001430)	FBLL1 (ENSCHYG00000001466)	ZFYVE16 (ENSCHYG00000001479)	FAM151B (ENSCHYG00000001495) #16	ANKRD34B (ENSCHYG00000001516) #17	ENSCHYG00000001529 #18	MSH3 (ENSCHYG00000001577) #19	ENSCHYG00000001733	ENSCHYG00000001743	RASGRF2 (ENSCHYG00000001777) #21	CKMT2 (ENSCHYG00000001872) #22	ZCCHC9 (ENSCHYG00000001898) #23	ACOT12 (ENSCHYG00000001923) #24	SSBP2 (ENSCHYG00000002111) #25	ENSCHYG00000002539	ENSCHYG00000002550	ATG10 (ENSCHYG00000002572) #26	RPS23 (ENSCHYG00000002604) #28	ENSCHYG00000002627 #29	ENSCHYG00000002635	ENSCHYG00000002651 #33	XRCC4 (ENSCHYG00000002672) #34	VCAN (ENSCHYG00000002720) #35	HAPLN1 (ENSCHYG00000002889) #37	EDIL3 (ENSCHYG00000002937)	ENSCHYG00000003033
Percora_a	ANCESTRAL SPECIES		ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00410000025556.a.a.a.a	ENSGT00950000184894	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Siberian musk deer	MODERN SPECIES	64	NUDCD2 (ENSMMSG00000006955)	HMMR (ENSMMSG00000006997)	MAT2B (ENSMMSG00000007173)	ENSMMSG00000007216	ENSMMSG00000007237	TENM2 (ENSMMSG00000007353)	WWC1 (ENSMMSG00000007937)	RARS1 (ENSMMSG00000007978)	FBLL1 (ENSMMSG00000008027)	ZFYVE16 (ENSMMSG00000008048)	FAM151B (ENSMMSG00000008153) #16	ANKRD34B (ENSMMSG00000008176) #17	ENSMMSG00000008196 #18	MSH3 (ENSMMSG00000008280) #19	RASGRF2 (ENSMMSG00000008773) #21	CKMT2 (ENSMMSG00000008923) #22	ZCCHC9 (ENSMMSG00000008961) #23	ACOT12 (ENSMMSG00000008994) #24	ENSMMSG00000009140 #25	ATG10 (ENSMMSG00000009261) #26	RPS23 (ENSMMSG00000009338) #28	ENSMMSG00000009376 #29	TMEM167A (ENSMMSG00000009408) #33	XRCC4 (ENSMMSG00000009442) #34	VCAN (ENSMMSG00000009492) #35	HAPLN1 (ENSMMSG00000009670) #37	EDIL3 (ENSMMSG00000009709)	ENSMMSG00000009810	ENSMMSG00000009859	RASA1 (ENSMMSG00000009941)	CCNH (ENSMMSG00000010425)
Bovidae	ANCESTRAL SPECIES		ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000154726	ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.b	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00910000147866
Goat	MODERN SPECIES	26	HMMR (ENSCHIG00000026654)	MAT2B (ENSCHIG00000027101)	ENSCHIG00000027115	TENM2 (ENSCHIG00000025474)	ENSCHIG00000018606	WWC1 (ENSCHIG00000012879)	ENSCHIG00000023409	RARS1 (ENSCHIG00000021126)	FBLL1 (ENSCHIG00000005751)	ZFYVE16 (ENSCHIG00000022133)	FAM151B (ENSCHIG00000009422) #16	ANKRD34B (ENSCHIG00000009844) #17	ENSCHIG00000016160 #18	MSH3 (ENSCHIG00000026585) #19	RASGRF2 (ENSCHIG00000027194) #21	CKMT2 (ENSCHIG00000018578) #22	ZCCHC9 (ENSCHIG00000024514) #23	ACOT12 (ENSCHIG00000018595) #24	ENSCHIG00000020381 #25	ENSCHIG00000013647	ATG10 (ENSCHIG00000023237) #26	RPS23 (ENSCHIG00000014944) #28	ENSCHIG00000026375 #29	ENSCHIG00000012625 #33	ENSCHIG00000010267	XRCC4 (ENSCHIG00000015879) #34	VCAN (ENSCHIG00000026117) #35	HAPLN1 (ENSCHIG00000023635) #37	EDIL3 (ENSCHIG00000020190)	ENSCHIG00000018614	ENSCHIG00000026992
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020012972	MAT2B (ENSOARG00020013000)	ENSOARG00020013170	ENSOARG00020013238	ENSOARG00020013302	TENM2 (ENSOARG00020013483)	WWC1 (ENSOARG00020015297)	RARS1 (ENSOARG00020015698)	ENSOARG00020015828	FBLL1 (ENSOARG00020015848)	ZFYVE16 (ENSOARG00020015887)	ANKRD34B (ENSOARG00020016203) #17	DHFR (ENSOARG00020016220) #18	MSH3 (ENSOARG00020016326) #19	RASGRF2 (ENSOARG00020016662) #21	CKMT2 (ENSOARG00020016978) #22	ENSOARG00020017025 #23	ACOT12 (ENSOARG00020017094) #24	SSBP2 (ENSOARG00020017360) #25	ATG10 (ENSOARG00020020709) #26	ENSOARG00020020926	RPS23 (ENSOARG00020020958) #28	TMEM167A (ENSOARG00020021065) #33	ENSOARG00020021132	XRCC4 (ENSOARG00020021156) #34	VCAN (ENSOARG00020021234) #35	HAPLN1 (ENSOARG00020021646) #37	EDIL3 (ENSOARG00020021700)	ENSOARG00020021797	ENSOARG00020021822	RASA1 (ENSOARG00020021922)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000001644	ENSGT00390000007135	ENSGT00390000006721	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.c	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634
Bos	ANCESTRAL SPECIES	3	ENSGT00390000006721	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.a.a.a.b.a.b	ENSGT00940000167952	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.c	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000006721	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.a.a.a.b.a.b	ENSGT00940000167952	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634	ENSGT00940000153147.m.a.a.a.a.a
Wild yak	MODERN SPECIES	1673			ENSBMUG00000002191	ENSBMUG00000002209	TENM2 (ENSBMUG00000002419)	ENSBMUG00000002483	WWC1 (ENSBMUG00000002665)	RARS1 (ENSBMUG00000002729)	FBLL1 (ENSBMUG00000002739)	ZFYVE16 (ENSBMUG00000002756)	FAM151B (ENSBMUG00000002772) #16	ANKRD34B (ENSBMUG00000002787) #17	ENSBMUG00000002842 #18	MSH3 (ENSBMUG00000002868) #19	RASGRF2 (ENSBMUG00000002910) #21	CKMT2 (ENSBMUG00000002945) #22	ZCCHC9 (ENSBMUG00000002979) #23	ACOT12 (ENSBMUG00000003028) #24
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001421	ENSBGRG00000001444	TENM2 (ENSBGRG00000001510)	WWC1 (ENSBGRG00000001753)	ENSBGRG00000001798	RARS1 (ENSBGRG00000001810)	FBLL1 (ENSBGRG00000001840)	ZFYVE16 (ENSBGRG00000001850)	ENSBGRG00000001866	FAM151B (ENSBGRG00000001882) #16	ANKRD34B (ENSBGRG00000001888) #17	ENSBGRG00000001908 #18	ENSBGRG00000001927	MSH3 (ENSBGRG00000001953) #19	RASGRF2 (ENSBGRG00000002055) #21	CKMT2 (ENSBGRG00000002164) #22	ZCCHC9 (ENSBGRG00000002188) #23	ACOT12 (ENSBGRG00000002226) #24	ENSBGRG00000002331 #25	ATG10 (ENSBGRG00000002509) #26	ENSBGRG00000002531	RPS23 (ENSBGRG00000002552) #28	ENSBGRG00000002629 #29	ENSBGRG00000002643 #33	XRCC4 (ENSBGRG00000002672) #34	ENSBGRG00000002717 #35	HAPLN1 (ENSBGRG00000002793) #37	EDIL3 (ENSBGRG00000002823)	ENSBGRG00000002876	ENSBGRG00000002891	ENSBGRG00000002911
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000007135	ENSGT00390000006721.d	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.a.a.a.b.a.b	ENSGT00940000167952	ENSGT01030000234566.e.b.a.b	ENSGT00950000184894	ENSGT00410000025556.a.a.a.a	ENSGT00530000063407.b	ENSGT00550000074792.a.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.i #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed.g #28	ENSGT00940000158156 #29	ENSGT00940000155186.t.c.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.h.a.b.a.a.a.c	ENSGT00390000011776.i.b.a	ENSGT00940000155846	ENSGT00390000008634
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005026302	ENSBIXG00005026331	ENSBIXG00005026367	TENM2 (ENSBIXG00005026969)	ENSBIXG00005027111	WWC1 (ENSBIXG00005027164)	RARS1 (ENSBIXG00005027188)	FBLL1 (ENSBIXG00005027200)	ENSBIXG00005027201	ZFYVE16 (ENSBIXG00005027263)	FAM151B (ENSBIXG00005004697) #16	ANKRD34B (ENSBIXG00005004705) #17	ENSBIXG00005027356 #18	MSH3 (ENSBIXG00005027416) #19	RASGRF2 (ENSBIXG00005027490) #21	CKMT2 (ENSBIXG00005027530) #22	ZCCHC9 (ENSBIXG00005027597) #23	ACOT12 (ENSBIXG00005027646) #24	SSBP2 (ENSBIXG00005027806) #25	ATG10 (ENSBIXG00005027902) #26	RPS23 (ENSBIXG00005027957) #28	ENSBIXG00005007595 #29	ENSBIXG00005028035 #33	XRCC4 (ENSBIXG00005006967) #34	VCAN (ENSBIXG00005028318) #35	HAPLN1 (ENSBIXG00005028378) #37	EDIL3 (ENSBIXG00005028476)	ENSBIXG00005004939	ENSBIXG00005004944	ENSBIXG00005002395	ENSBIXG00005002359
Cow	MODERN SPECIES	26	ENSBTAG00000051872	ENSBTAG00000050903	ENSBTAG00000049237	ENSBTAG00000030274	TENM2 (ENSBTAG00000025071)	WWC1 (ENSBTAG00000013880)	ENSBTAG00000051069	RARS1 (ENSBTAG00000014626)	FBLL1 (ENSBTAG00000004657)	ZFYVE16 (ENSBTAG00000021577)	FAM151B (ENSBTAG00000007632) #16	ANKRD34B (ENSBTAG00000007633) #17	DHFR (ENSBTAG00000007681) #18	MSH3 (ENSBTAG00000007684) #19	RASGRF2 (ENSBTAG00000030259) #21	CKMT2 (ENSBTAG00000001003) #22	ZCCHC9 (ENSBTAG00000005265) #23	ACOT12 (ENSBTAG00000011110) #24	SSBP2 (ENSBTAG00000013856) #25	ATG10 (ENSBTAG00000038117) #26	RPS23 (ENSBTAG00000013358) #28	ATP6AP1L (ENSBTAG00000050733) #29	TMEM167A (ENSBTAG00000039591) #33	XRCC4 (ENSBTAG00000024275) #34	VCAN (ENSBTAG00000014906) #35	HAPLN1 (ENSBTAG00000012411) #37	EDIL3 (ENSBTAG00000044033)	ENSBTAG00000039555	ENSBTAG00000037434	RASA1 (ENSBTAG00000009565)	ENSBTAG00000039523
American bison	MODERN SPECIES	3347	NUDCD2 (ENSBBBG00000015507)	HMMR (ENSBBBG00000015491)	MAT2B (ENSBBBG00000015365)	ENSBBBG00000003815	TENM2 (ENSBBBG00000003500)	WWC1 (ENSBBBG00000015306)	ENSBBBG00000015267	RARS1 (ENSBBBG00000015251)	FBLL1 (ENSBBBG00000015226)	ZFYVE16 (ENSBBBG00000008156)	FAM151B (ENSBBBG00000003762) #16	ANKRD34B (ENSBBBG00000015166) #17	ENSBBBG00000003536 #18	MSH3 (ENSBBBG00000002773) #19	RASGRF2 (ENSBBBG00000014983) #21	CKMT2 (ENSBBBG00000000814) #22	ZCCHC9 (ENSBBBG00000003607) #23	ACOT12 (ENSBBBG00000003637) #24	SSBP2 (ENSBBBG00000000825) #25	ATG10 (ENSBBBG00000001167) #26	RPS23 (ENSBBBG00000001192) #28	ENSBBBG00000001222 #29	ENSBBBG00000014913 #33	XRCC4 (ENSBBBG00000008154) #34	VCAN (ENSBBBG00000014864) #35	HAPLN1 (ENSBBBG00000014722) #37	EDIL3 (ENSBBBG00000014711)	ENSBBBG00000003562
Camelidae	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Arabian camel	MODERN SPECIES	22	BHMT (ENSCDRG00005019118)	JMY (ENSCDRG00005019085)	HOMER1 (ENSCDRG00005018978) #7	TENT2 (ENSCDRG00005018837) #8	CMYA5 (ENSCDRG00005018749) #9	MTX3 (ENSCDRG00005018661) #11	THBS4 (ENSCDRG00005018591) #12	SERINC5 (ENSCDRG00005018540) #13	SPZ1 (ENSCDRG00005018521)	ZFYVE16 (ENSCDRG00005018452)	FAM151B (ENSCDRG00005018435) #16	ANKRD34B (ENSCDRG00005018428) #17	ENSCDRG00005018379 #18	MSH3 (ENSCDRG00005017666) #19	RASGRF2 (ENSCDRG00005017402) #21	CKMT2 (ENSCDRG00005017343) #22	ZCCHC9 (ENSCDRG00005017268) #23	ACOT12 (ENSCDRG00005017206) #24	SSBP2 (ENSCDRG00005017010) #25	ATG10 (ENSCDRG00005016936) #26	RPS23 (ENSCDRG00005016870) ##28	ENSCDRG00005016847 #29	TMEM167A (ENSCDRG00005016802) #33	XRCC4 (ENSCDRG00005016772) #34	VCAN (ENSCDRG00005016571) #35	HAPLN1 (ENSCDRG00005016491) #37	ENSCDRG00005016462	EDIL3 (ENSCDRG00005016390)	ENSCDRG00005016325	RASA1 (ENSCDRG00005016008)	CCNH (ENSCDRG00005015934)
Alpaca	MODERN SPECIES	3620	BHMT2 (ENSVPAG00000009398)	BHMT (ENSVPAG00000009399)	JMY (ENSVPAG00000009400)	HOMER1 (ENSVPAG00000009401) #7	TENT2 (ENSVPAG00000009402) #8	CMYA5 (ENSVPAG00000009403) #9	ENSVPAG00000009404 #11	THBS4 (ENSVPAG00000009405) #12	SERINC5 (ENSVPAG00000009406) #13	SPZ1 (ENSVPAG00000009408)	ENSVPAG00000009409 #15	FAM151B (ENSVPAG00000009411) #16	ANKRD34B (ENSVPAG00000009413) #17	MSH3 (ENSVPAG00000009414) #19	RASGRF2 (ENSVPAG00000009416) #21	CKMT2 (ENSVPAG00000009421) #22	ZCCHC9 (ENSVPAG00000009423) #23	ACOT12 (ENSVPAG00000009424) #24	SSBP2 (ENSVPAG00000009425) #25	ATG10 (ENSVPAG00000009426) #26	RPS23 (ENSVPAG00000009427) #28	ENSVPAG00000009428 #29
Suina	ANCESTRAL SPECIES	11	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a.ed #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.y.a	ENSGT00390000018086.z	ENSGT00940000155846	ENSGT00390000008634
Chacoan peccary	MODERN SPECIES	204	BHMT (ENSCWAG00000010882)	JMY (ENSCWAG00000010992)	HOMER1 (ENSCWAG00000011069) #7	TENT2 (ENSCWAG00000011540) #8	CMYA5 (ENSCWAG00000011677) #9	MTX3 (ENSCWAG00000012419) #11	THBS4 (ENSCWAG00000012471) #12	SERINC5 (ENSCWAG00000012870) #13	SPZ1 (ENSCWAG00000013102)	ENSCWAG00000013133 #15	FAM151B (ENSCWAG00000013202) #16	ANKRD34B (ENSCWAG00000013240) #17	ENSCWAG00000013255 #18	MSH3 (ENSCWAG00000013447) #19	RASGRF2 (ENSCWAG00000017055) #21	CKMT2 (ENSCWAG00000017315) #22	ZCCHC9 (ENSCWAG00000017376) #23	ACOT12 (ENSCWAG00000017413) #24	SSBP2 (ENSCWAG00000017558) #25	ATG10 (ENSCWAG00000017706) #26	RPS23 (ENSCWAG00000017751) #28	ENSCWAG00000017781 #29	TMEM167A (ENSCWAG00000017841) #33	XRCC4 (ENSCWAG00000017866) #34	VCAN (ENSCWAG00000017930) #35	HAPLN1 (ENSCWAG00000018099) #37	EDIL3 (ENSCWAG00000018152)	COX7C (ENSCWAG00000018267)	RASA1 (ENSCWAG00000018315)	CCNH (ENSCWAG00000018608)	TMEM161B (ENSCWAG00000018662)
Pig	MODERN SPECIES	10	JMY (ENSSSCG00000014112)	HOMER1 (ENSSSCG00000014113) #7	ENSSSCG00000043942	TENT2 (ENSSSCG00000014114) #8	CMYA5 (ENSSSCG00000026098) #9	MTX3 (ENSSSCG00000014116) #11	THBS4 (ENSSSCG00000014117) #12	SERINC5 (ENSSSCG00000014119) #13	SPZ1 (ENSSSCG00000014122)	ZFYVE16 (ENSSSCG00000014121)	FAM151B (ENSSSCG00000014123) #16	ANKRD34B (ENSSSCG00000014124) #17	ENSSSCG00000031117 #18	MSH3 (ENSSSCG00000014126) #19	RASGRF2 (ENSSSCG00000014127) #21	CKMT2 (ENSSSCG00000014128) #22	ZCCHC9 (ENSSSCG00000014129) #23	ACOT12 (ENSSSCG00000036095) #24	SSBP2 (ENSSSCG00000035757) #25	ATG10 (ENSSSCG00000025210) #26	ENSSSCG00000049576	RPS23 (ENSSSCG00000014133) #28	ENSSSCG00000014132 #29	ENSSSCG00000047325	ENSSSCG00000057529	TMEM167A (ENSSSCG00000056442) #33	ENSSSCG00000045510	VCAN (ENSSSCG00000014136) #35	ENSSSCG00000038060	HAPLN1 (ENSSSCG00000014137) #37	EDIL3 (ENSSSCG00000026780)
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.b ##28	ENSGT01030000234916	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334
Carnivora	ANCESTRAL SPECIES	8	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z.j.b	ENSGT00990000209137
Caniformia	ANCESTRAL SPECIES	5	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.b	ENSGT00390000018086.z.j.b.a.a
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.b
Mustelinae	ANCESTRAL SPECIES	38	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00940000170977	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT01010000224334	ENSGT00940000158144	ENSGT00990000209137	ENSGT00940000155846	ENSGT00390000008634
Ferret	MODERN SPECIES	231								ENSMPUG00000008715 #16	ANKRD34B (ENSMPUG00000019827) #17	ENSMPUG00000008712	ENSMPUG00000008704 #18	ENSMPUG00000008702	MSH3 (ENSMPUG00000008661) #19	ENSMPUG00000008654	RASGRF2 (ENSMPUG00000008451) #21	CKMT2 (ENSMPUG00000008281) #22	ZCCHC9 (ENSMPUG00000008276) #23	ACOT12 (ENSMPUG00000008154) #24	ENSMPUG00000008145 #25	ATG10 (ENSMPUG00000008122) #26	RPS23 (ENSMPUG00000008114) #28	ENSMPUG00000008101 #29	XRCC4 (ENSMPUG00000008093) #34	VCAN (ENSMPUG00000008080) #35	HAPLN1 (ENSMPUG00000008073) #37	ENSMPUG00000008068	EDIL3 (ENSMPUG00000008054)	ENSMPUG00000008011	RASA1 (ENSMPUG00000007995)	CCNH (ENSMPUG00000007985)	TMEM161B (ENSMPUG00000007974)
American mink	MODERN SPECIES	112	JMY (ENSNVIG00000002287)	HOMER1 (ENSNVIG00000002206) #7	TENT2 (ENSNVIG00000002064) #8	CMYA5 (ENSNVIG00000002033) #9	MTX3 (ENSNVIG00000002002) #11	THBS4 (ENSNVIG00000001935) #12	SERINC5 (ENSNVIG00000001875) #13	SPZ1 (ENSNVIG00000001867)	ZFYVE16 (ENSNVIG00000001838)	F151B (ENSNVIG00000001809) #16	AN34B (ENSNVIG00000001804) #17	ENSNVIG00000001739 #18	MSH3 (ENSNVIG00000000962) #19	ENSNVIG00000000947	RASGRF2 (ENSNVIG00000000915) #21	CKMT2 (ENSNVIG00000000895) #22	ZCCHC9 (ENSNVIG00000000879) #23	ACOT12 (ENSNVIG00000000839) #24	SSBP2 (ENSNVIG00000000485) #25	ENSNVIG00000000465	ATG10 (ENSNVIG00000000443) #26	ENSNVIG00000000430	RPS23 (ENSNVIG00000000390) ##28
Ursidae	ANCESTRAL SPECIES	16	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227.h.b #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.b	ENSGT00940000155846	ENSGT00390000008634
Ursus	ANCESTRAL SPECIES	3	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227.h.b #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.c #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A.b #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29
American black bear	MODERN SPECIES	6833																CKMT2 (ENSUAMG00000028185) #22
Polar bear	MODERN SPECIES	447	BHMT (ENSUMAG00000001999)	JMY (ENSUMAG00000002008)	HOMER1 (ENSUMAG00000002034) #7	ENSUMAG00000002085 #7	TENT2 (ENSUMAG00000002121) #8	CMYA5 (ENSUMAG00000002136) #9	MTX3 (ENSUMAG00000002205) #11	THBS4 (ENSUMAG00000002341) #12	SERINC5 (ENSUMAG00000002880) #13	SPZ1 (ENSUMAG00000002883)	ZFYVE16 (ENSUMAG00000002887)	FAM151B (ENSUMAG00000002893) #16	ENSUMAG00000002915 #18	MSH3 (ENSUMAG00000002941) #19	RASGRF2 (ENSUMAG00000003013) #21	CKMT2 (ENSUMAG00000003245) #22	ZCCHC9 (ENSUMAG00000003264) #23	ACOT12 (ENSUMAG00000003268) #24	SSBP2 (ENSUMAG00000003294) #25	ATG10 (ENSUMAG00000003350) #26	RPS23 (ENSUMAG00000003372) #28	ENSUMAG00000003378 #29
Giant Panda	MODERN SPECIES	13	JMY (ENSAMEG00000015594)	HOMER1 (ENSAMEG00000015607) #7	TENT2 (ENSAMEG00000015619) #8	CMYA5 (ENSAMEG00000015633) #9	MTX3 (ENSAMEG00000015643) #11	THBS4 (ENSAMEG00000015652) #12	SERINC5 (ENSAMEG00000015721) #13	SPZ1 (ENSAMEG00000019078)	ZFYVE16 (ENSAMEG00000015737)	FAM151B (ENSAMEG00000015740) #16	ANKRD34B (ENSAMEG00000019111) #17	ENSAMEG00000015750 #18	MSH3 (ENSAMEG00000015754) #19	RASGRF2 (ENSAMEG00000015782) #21	ENSAMEG00000028748	CKMT2 (ENSAMEG00000015838) #22	ACOT12 (ENSAMEG00000015867) #24	SSBP2 (ENSAMEG00000015913) #25	ATG10 (ENSAMEG00000015949) #26	ENSAMEG00000028746	RPS23 (ENSAMEG00000015966) #28	ENSAMEG00000027104 #29	TMEM167A (ENSAMEG00000023466) #33	XRCC4 (ENSAMEG00000007459) #34	VCAN (ENSAMEG00000007464) #35	HAPLN1 (ENSAMEG00000007517) #37	EDIL3 (ENSAMEG00000004721)	COX7C (ENSAMEG00000013441)	RASA1 (ENSAMEG00000013362)	CCNH (ENSAMEG00000013328)	TMEM161B (ENSAMEG00000013309)
Canidae	ANCESTRAL SPECIES	52	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.e.a.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.a	ENSGT00940000155846
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT00940000162350.b.b	ENSGT00940000162350.b.a	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.e.a.a.b #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182901.a.a.b.b.a.b.a.b.b.b	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186.q.a #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.j.b.a.a	ENSGT00940000155846	ENSGT00390000008634
Dog	MODERN SPECIES	22	HOMER1 (ENSCAFG00845006728) #7	TENT2 (ENSCAFG00845006530) #8	CMYA5 (ENSCAFG00845006378) #9	MTX3 (ENSCAFG00845006230) #11	THBS4 (ENSCAFG00845006098) #12	ENSCAFG00845006060	SERINC5 (ENSCAFG00845006037) #13	SPZ1 (ENSCAFG00845006011)	ZFYVE16 (ENSCAFG00845005949)	FAM151B (ENSCAFG00845005890) #16	ANKRD34B (ENSCAFG00845005864) #17	ENSCAFG00845005830 #18	MSH3 (ENSCAFG00845022317) #19	ENSCAFG00845022211	RASGRF2 (ENSCAFG00845021795) #21	CKMT2 (ENSCAFG00845021668) #22	ZCCHC9 (ENSCAFG00845021627) #23	ACOT12 (ENSCAFG00845021525) #24	SSBP2 (ENSCAFG00845021264) #25	ENSCAFG00845021100 #26	ENSCAFG00845021041	RPS23 (ENSCAFG00845020943) ##28	ENSCAFG00845020741 #29	TMEM167A (ENSCAFG00845020637) #33	XRCC4 (ENSCAFG00845020506) #34	VCAN (ENSCAFG00845020098) #35	HAPLN1 (ENSCAFG00845019962) #37	EDIL3 (ENSCAFG00845019823)	ENSCAFG00845019702	ENSCAFG00845019654	ENSCAFG00845019491
Dingo	MODERN SPECIES	138	MTX3 (ENSCAFG00020026315) #11	THBS4 (ENSCAFG00020026420) #12	ENSCAFG00020026808	ENSCAFG00020026810	SERINC5 (ENSCAFG00020026812) #13	SPZ1 (ENSCAFG00020026814)	ZFYVE16 (ENSCAFG00020026815)	ENSCAFG00020026816	FAM151B (ENSCAFG00020026818) #16	ANKRD34B (ENSCAFG00020026819) #17	ENSCAFG00020000151 #18	MSH3 (ENSCAFG00020000422) #19	ENSCAFG00020001180	RASGRF2 (ENSCAFG00020001341) #21	ENSCAFG00020002891	CKMT2 (ENSCAFG00020002898) #22	ZCCHC9 (ENSCAFG00020002911) #23	ACOT12 (ENSCAFG00020002922) #24	SSBP2 (ENSCAFG00020002937) #25	ATG10 (ENSCAFG00020002977) #26	ENSCAFG00020002993 ##28	ENSCAFG00020003016	ENSCAFG00020003017 #29	ENSCAFG00020003023	XRCC4 (ENSCAFG00020003038) #34	ENSCAFG00020003191	ENSCAFG00020003203 #35	HAPLN1 (ENSCAFG00020003233) #37	EDIL3 (ENSCAFG00020003249)	ENSCAFG00020003272	ENSCAFG00020003294
Red fox	MODERN SPECIES	27	HOMER1 (ENSVVUG00000024979) #7	TENT2 (ENSVVUG00000024977) #8	CMYA5 (ENSVVUG00000024975) #9	ENSVVUG00000024973	MTX3 (ENSVVUG00000024969) #11	THBS4 (ENSVVUG00000024964) #12	SERINC5 (ENSVVUG00000024958) #13	SPZ1 (ENSVVUG00000024956)	ZFYVE16 (ENSVVUG00000024953)	FAM151B (ENSVVUG00000024951) #16	ANKRD34B (ENSVVUG00000024950) #17	ENSVVUG00000024949	DHFR (ENSVVUG00000024946) #18	MSH3 (ENSVVUG00000024903) #19	RASGRF2 (ENSVVUG00000024881) #21	CKMT2 (ENSVVUG00000024873) #22	CCNI (ENSVVUG00000024871)	CCNG2 (ENSVVUG00000024867)	CXCL13 (ENSVVUG00000024863)	CNOT6L (ENSVVUG00000024858)	MRPL1 (ENSVVUG00000024857)	ENSVVUG00000024856	FRAS1 (ENSVVUG00000024813)	ANXA3 (ENSVVUG00000024795)	ENSVVUG00000024794	BMP2K (ENSVVUG00000024784)	PAQR3 (ENSVVUG00000024780)	ENSVVUG00000024772	ENSVVUG00000024769	GK2 (ENSVVUG00000024765)	ANTXR2 (ENSVVUG00000024752)
Felidae	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k.f	ENSGT00940000155846
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000161069.h	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00950000184259	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT01000000215143	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k.f
Tiger	MODERN SPECIES	134	HOMER1 (ENSPTIG00000018119) #7	TENT2 (ENSPTIG00000015267) #8	CMYA5 (ENSPTIG00000014447) #9	ENSPTIG00000014075 #11	THBS4 (ENSPTIG00000012684) #12	SERINC5 (ENSPTIG00000011391) #13	SPZ1 (ENSPTIG00000004689)	ZFYVE16 (ENSPTIG00000010471)	FAM151B (ENSPTIG00000009413) #16	ANKRD34B (ENSPTIG00000004658) #17	ENSPTIG00000007949	ENSPTIG00000006963 #18	MSH3 (ENSPTIG00000000043) #19	ENSPTIG00000021977	RASGRF2 (ENSPTIG00000021051) #21	CKMT2 (ENSPTIG00000018190) #22	ZCCHC9 (ENSPTIG00000017303) #23	ACOT12 (ENSPTIG00000016875) #24	SSBP2 (ENSPTIG00000010302) #25	ATG10 (ENSPTIG00000007429) #26	ENSPTIG00000006771	RPS23 (ENSPTIG00000021170) #28	ENSPTIG00000020744 #29	ENSPTIG00000020576	TMEM167A (ENSPTIG00000020380) #33	XRCC4 (ENSPTIG00000018886) #34	ENSPTIG00000015827 #35	HAPLN1 (ENSPTIG00000015518) #37	EDIL3 (ENSPTIG00000013147)	COX7C (ENSPTIG00000012097)	RASA1 (ENSPTIG00000001406)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000156640 #8	ENSGT00950000183010.a.a.a.b.b	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000161069.h	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00950000184259	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000263873	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT01000000215143	ENSGT00940000155186.q.b #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k.f
lion	MODERN SPECIES		HOMER1 (ENSPLOG00000000572) #7	TENT2 (ENSPLOG00000000530) #8	ENSPLOG00000000504	CMYA5 (ENSPLOG00000000485) #9	MTX3 (ENSPLOG00000000460) #11	THBS4 (ENSPLOG00000000412) #12	SERINC5 (ENSPLOG00000000355) #13	SPZ1 (ENSPLOG00000000337)	ENSPLOG00000000257	ZFYVE16 (ENSPLOG00000000241)	FAM151B (ENSPLOG00000000229) #16	ANKRD34B (ENSPLOG00000000219) #17	ENSPLOG00000000207 #18	MSH3 (ENSPLOG00000000131) #19	RASGRF2 (ENSPLOG00000000068) #21	CKMT2 (ENSPLOG00000000058) #22	ZCCHC9 (ENSPLOG00000000050) #23	ACOT12 (ENSPLOG00000000044) #24	SSBP2 (ENSPLOG00000000026) #25	ATG10 (ENSPLOG00000014220) #26	ENSPLOG00000014144 #28	ENSPLOG00000014059 #29	ENSPLOG00000013980 #33	XRCC4 (ENSPLOG00000013925) #34	ENSPLOG00000013906	VCAN (ENSPLOG00000013768) #35	HAPLN1 (ENSPLOG00000013633) #37	EDIL3 (ENSPLOG00000013439)	ENSPLOG00000013409	COX7C (ENSPLOG00000013360)	RASA1 (ENSPLOG00000013077)
leopard	MODERN SPECIES	40	ENSPPRG00000018657	CMYA5 (ENSPPRG00000010137) #9	MTX3 (ENSPPRG00000010541) #11	ENSPPRG00000010693 #11	THBS4 (ENSPPRG00000011385) #12	SERINC5 (ENSPPRG00000012240) #13	SPZ1 (ENSPPRG00000019097)	ZFYVE16 (ENSPPRG00000012892)	FAM151B (ENSPPRG00000013219) #16	ANKRD34B (ENSPPRG00000019199) #17	ENSPPRG00000014559	ENSPPRG00000015793 #18	MSH3 (ENSPPRG00000018081) #19	ENSPPRG00000019187	RASGRF2 (ENSPPRG00000024375) #21	CKMT2 (ENSPPRG00000023587) #22	ZCCHC9 (ENSPPRG00000023474) #23	ACOT12 (ENSPPRG00000022908) #24	SSBP2 (ENSPPRG00000004684) #25	ATG10 (ENSPPRG00000005547) #26	ENSPPRG00000005949	RPS23 (ENSPPRG00000006877) #28	ENSPPRG00000007261 #29	ENSPPRG00000007337	ENSPPRG00000008129 #33	XRCC4 (ENSPPRG00000008800) #34	ENSPPRG00000010678 #35	HAPLN1 (ENSPPRG00000011520) #37	EDIL3 (ENSPPRG00000012668)	ENSPPRG00000013140	COX7C (ENSPPRG00000013235)
Cat	MODERN SPECIES		BHMT (ENSFCAG00000040239)	JMY (ENSFCAG00000025959)	HOMER1 (ENSFCAG00000015755) #7	TENT2 (ENSFCAG00000027560) #8	CMYA5 (ENSFCAG00000000223) #9	MTX3 (ENSFCAG00000003877) #11	THBS4 (ENSFCAG00000003879) #12	SERINC5 (ENSFCAG00000003881) #13	SPZ1 (ENSFCAG00000043127)	ZFYVE16 (ENSFCAG00000025974)	FAM151B (ENSFCAG00000042765) #16	ANKRD34B (ENSFCAG00000028474) #17	ENSFCAG00000026745 #18	MSH3 (ENSFCAG00000005686) #19	RASGRF2 (ENSFCAG00000022975) #21	CKMT2 (ENSFCAG00000004820) #22	ZCCHC9 (ENSFCAG00000033419) #23	ACOT12 (ENSFCAG00000009827) #24	SSBP2 (ENSFCAG00000011841) #25	ATG10 (ENSFCAG00000036397) #26	ENSFCAG00000022315	RPS23 (ENSFCAG00000008839) #28	ENSFCAG00000046011 #29	ENSFCAG00000045423 #33	XRCC4 (ENSFCAG00000029944) #34	VCAN (ENSFCAG00000023191) #35	HAPLN1 (ENSFCAG00000037432) #37	EDIL3 (ENSFCAG00000002497)	ENSFCAG00000050071	ENSFCAG00000022528	COX7C (ENSFCAG00000034705)
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Equus	ANCESTRAL SPECIES	6	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01100000266343	ENSGT00550000074784.a.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Horse	MODERN SPECIES	5	HOMER1 (ENSECAG00000013350) #7	TENT2 (ENSECAG00000012698) #8	CMYA5 (ENSECAG00000034911) #9	MTX3 (ENSECAG00000008541) #11	THBS4 (ENSECAG00000019665) #12	SERINC5 (ENSECAG00000016315) #13	ENSECAG00000046435	SPZ1 (ENSECAG00000005453)	ZFYVE16 (ENSECAG00000013918)	ENSECAG00000056306	FAM151B (ENSECAG00000013808) #16	ANKRD34B (ENSECAG00000004587) #17	ENSECAG00000026827 #18	MSH3 (ENSECAG00000009962) #19	RASGRF2 (ENSECAG00000000903) #21	CKMT2 (ENSECAG00000024226) #22	ZCCHC9 (ENSECAG00000023186) #23	ACOT12 (ENSECAG00000021196) #24	SSBP2 (ENSECAG00000020782) #25	ATG10 (ENSECAG00000026970) #26	ENSECAG00000035044	RPS23 (ENSECAG00000031968) ##28	ATP6AP1L (ENSECAG00000020318) #29	TMEM167A (ENSECAG00000026834) #33	XRCC4 (ENSECAG00000020269) #34	VCAN (ENSECAG00000019596) #35	HAPLN1 (ENSECAG00000016477) #37	EDIL3 (ENSECAG00000015388)	ENSECAG00000030211	CCNH (ENSECAG00000001853)	RASA1 (ENSECAG00000005203)
Donkey	MODERN SPECIES	29	JMY (ENSEASG00005001982)	HOMER1 (ENSEASG00005001988) #7	TENT2 (ENSEASG00005001993) #8	CMYA5 (ENSEASG00005037295) #9	MTX3 (ENSEASG00005002019) #11	THBS4 (ENSEASG00005002059) #12	SERINC5 (ENSEASG00005002191) #13	ENSEASG00005002196	SPZ1 (ENSEASG00005002199)	ZFYVE16 (ENSEASG00005002242)	FAM151B (ENSEASG00005002548) #16	ANKRD34B (ENSEASG00005002555) #17	ENSEASG00005002559 #18	MSH3 (ENSEASG00005002611) #19	RASGRF2 (ENSEASG00005002852) #21	CKMT2 (ENSEASG00005004085) #22	ZCCHC9 (ENSEASG00005004088) #23	ENSEASG00005032079 #24	SSBP2 (ENSEASG00005004112) #25	ENSEASG00005032025 ##25	ATG10 (ENSEASG00005004128) #26	ENSEASG00005004133	RPS23 (ENSEASG00005004140) ##28	ENSEASG00005004142 #29	TMEM167A (ENSEASG00005035583) #33	XRCC4 (ENSEASG00005004152) #34	VCAN (ENSEASG00005004200) #35	HAPLN1 (ENSEASG00005004559) #37	ENSEASG00005004576	ENSEASG00005024880	ENSEASG00005027718
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186.p #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00990000209137	ENSGT00390000018086.z.k	ENSGT00940000155846	ENSGT00390000008634
Greater horseshoe bat	MODERN SPECIES	25	JMY (ENSRFEG00010018821)	HOMER1 (ENSRFEG00010018881) #7	TENT2 (ENSRFEG00010019113) #8	CMYA5 (ENSRFEG00010019210) #9	MTX3 (ENSRFEG00010019245) #11	THBS4 (ENSRFEG00010019289) #12	SERINC5 (ENSRFEG00010019347) #13	SPZ1 (ENSRFEG00010019387)	ZFYVE16 (ENSRFEG00010019402)	FAM151B (ENSRFEG00010019442) #16	ANKRD34B (ENSRFEG00010019460) #17	ENSRFEG00010019476 #18	MSH3 (ENSRFEG00010019541) #19	ENSRFEG00010019598	RASGRF2 (ENSRFEG00010019626) #21	CKMT2 (ENSRFEG00010019715) #22	ACOT12 (ENSRFEG00010019759) #24	ZCCHC9 (ENSRFEG00010019818) #23	SSBP2 (ENSRFEG00010019877) #25	ENSRFEG00010019999	ATG10 (ENSRFEG00010020034) #26	RPS23 (ENSRFEG00010020074) #28	ENSRFEG00010020195 #29	ENSRFEG00010020237 #33	XRCC4 (ENSRFEG00010020264) #34	VCAN (ENSRFEG00010020306) #35	HAPLN1 (ENSRFEG00010020554) #37	EDIL3 (ENSRFEG00010020588)	ENSRFEG00010020631	ENSRFEG00010020642	RASA1 (ENSRFEG00010020705)
Microbat	MODERN SPECIES	937	HOMER1 (ENSMLUG00000010972) #7	TENT2 (ENSMLUG00000010990) #8	CMYA5 (ENSMLUG00000011014) #9	ENSMLUG00000026872	MTX3 (ENSMLUG00000013201) #11	THBS4 (ENSMLUG00000013206) #12	SERINC5 (ENSMLUG00000013220) #13	ENSMLUG00000029886	ENSMLUG00000014110	ENSMLUG00000002842 #15	FAM151B (ENSMLUG00000002854) #16	ANKRD34B (ENSMLUG00000002857) #17	ENSMLUG00000012200 #18	MSH3 (ENSMLUG00000001865) #19	RASGRF2 (ENSMLUG00000001877) #21	CKMT2 (ENSMLUG00000001884) #22	ZCCHC9 (ENSMLUG00000001886) #23	ACOT12 (ENSMLUG00000001890) #24	SSBP2 (ENSMLUG00000001897) #25	ATG10 (ENSMLUG00000013935) #26	ENSMLUG00000013939 ##28	ENSMLUG00000013943 #29	TMEM167A (ENSMLUG00000008924) #33	XRCC4 (ENSMLUG00000013754) #34	VCAN (ENSMLUG00000013757) #35	HAPLN1 (ENSMLUG00000001603) #37	EDIL3 (ENSMLUG00000011587)	ENSMLUG00000023755	ENSMLUG00000024030	COX7C (ENSMLUG00000026041)	ENSMLUG00000030456
Megabat	MODERN SPECIES	4087															RASGRF2 (ENSPVAG00000006544) #21	CKMT2 (ENSPVAG00000006550) #22	ACOT12 (ENSPVAG00000006553) #24
Atlantogenata	ANCESTRAL SPECIES		ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Afrotheria	ANCESTRAL SPECIES	12	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Afrotheria_a	ANCESTRAL SPECIES	12	ENSGT00390000003122.c.a	ENSGT00510000046704.b.a	ENSGT00940000156354 #7	ENSGT00940000156640 #8	ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Elephant	MODERN SPECIES	526	TENT2 (ENSLAFG00000009190) #8	ENSLAFG00000029991 #9	ENSLAFG00000013738 #9	MTX3 (ENSLAFG00000001716) #11	THBS4 (ENSLAFG00000008818) #12	SERINC5 (ENSLAFG00000009830) #13	SPZ1 (ENSLAFG00000009834)	ENSLAFG00000017608 #15	FAM151B (ENSLAFG00000017619) #16	ANKRD34B (ENSLAFG00000010904) #17	ENSLAFG00000029028 #18	ENSLAFG00000015797 #19	ENSLAFG00000029236 #19	RASGRF2 (ENSLAFG00000011576) #21	ENSLAFG00000028067	CKMT2 (ENSLAFG00000011587) #22	ZCCHC9 (ENSLAFG00000012763) #23	ACOT12 (ENSLAFG00000012765) #24	SSBP2 (ENSLAFG00000012776) #25	ATG10 (ENSLAFG00000013183) #26	RPS23 (ENSLAFG00000031506) ##28	ENSLAFG00000013186 #29	TMEM167A (ENSLAFG00000009206) #33	ENSLAFG00000011855	VCAN (ENSLAFG00000002716) #35	HAPLN1 (ENSLAFG00000010769) #37	EDIL3 (ENSLAFG00000017730)	COX7C (ENSLAFG00000017502)	RASA1 (ENSLAFG00000011060)	CCNH (ENSLAFG00000028032)	TMEM161B (ENSLAFG00000011097)
Hyrax	MODERN SPECIES	2259																ENSPCAG00000001555 #22	ENSPCAG00000001605 #23
Tenrec	MODERN SPECIES	2773																CKMT2 (ENSETEG00000006852) #22
Xenarthra	ANCESTRAL SPECIES	259					ENSGT00940000159696 #9	ENSGT00950000182919.B.b #11	ENSGT00940000155227 #12	ENSGT01030000234623.a.b.a #13	ENSGT00950000182767.a.b.b	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25
Armadillo	MODERN SPECIES	1316			CMYA5 (ENSDNOG00000040392) #9	MTX3 (ENSDNOG00000043463) #11	THBS4 (ENSDNOG00000010496) #12	ENSDNOG00000019622 #13	ENSDNOG00000046018	ENSDNOG00000009003	ENSDNOG00000007096 #15	FAM151B (ENSDNOG00000043373) #16	ANKRD34B (ENSDNOG00000001607) #17	ENSDNOG00000043623	ENSDNOG00000038425 #18	MSH3 (ENSDNOG00000005942) #19	RASGRF2 (ENSDNOG00000002801) #21	CKMT2 (ENSDNOG00000016705) #22	ZCCHC9 (ENSDNOG00000016708) #23	ACOT12 (ENSDNOG00000009900) #24	SSBP2 (ENSDNOG00000009927) #25	ENSDNOG00000032637	ENSDNOG00000049021 #26	SERPINA12 (ENSDNOG00000014643)	SERPINA5 (ENSDNOG00000008676)	ENSDNOG00000036914	SERPINA3 (ENSDNOG00000009568)	GSC (ENSDNOG00000009490)
Sloth	MODERN SPECIES	2462																CKMT2 (ENSCHOG00000011868) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846
Opossum	MODERN SPECIES	2	C5orf34 (ENSMODG00000020277)	PAIP1 (ENSMODG00000020276)	NNT (ENSMODG00000020275)	FGF10 (ENSMODG00000050618)	MRPS30 (ENSMODG00000020268)	ENSMODG00000028526	ENSMODG00000020267	ENSMODG00000041626	ENSMODG00000027527	ENSMODG00000024858	ENSMODG00000020265	ANKRD34B (ENSMODG00000024859) #17	ENSMODG00000024860 #18	MSH3 (ENSMODG00000020264) #19	RASGRF2 (ENSMODG00000020263) #21	CKMT2 (ENSMODG00000020259) #22	ZCCHC9 (ENSMODG00000020261) #23	ACOT12 (ENSMODG00000020260) #24	SSBP2 (ENSMODG00000020258) #25	ENSMODG00000044614	ENSMODG00000024865 #26	RPS23 (ENSMODG00000020255) #28	ENSMODG00000037212 #29	ENSMODG00000040896 #33	XRCC4 (ENSMODG00000020253) #34	ENSMODG00000020252 #35	HAPLN1 (ENSMODG00000038203) #37	EDIL3 (ENSMODG00000020246)	ENSMODG00000045346	ENSMODG00000041038	ENSMODG00000024868
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930.a.a.b	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283.a #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000001347.t	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634
koala	MODERN SPECIES	5					MARVELD2 (ENSPCIG00000033113)	RAD17 (ENSPCIG00000024704)	ENSPCIG00000034861	CCDC125 (ENSPCIG00000005071)	ENSPCIG00000013227 #15	FAM151B (ENSPCIG00000013226) #16	ENSPCIG00000032886 #17	ENSPCIG00000013220 #18	ENSPCIG00000013221	MSH3 (ENSPCIG00000013216) #19	RASGRF2 (ENSPCIG00000013213) #21	CKMT2 (ENSPCIG00000013210) #22	ZCCHC9 (ENSPCIG00000013208) #23	ACOT12 (ENSPCIG00000013207) #24	SSBP2 (ENSPCIG00000013205) #25	ATG10 (ENSPCIG00000029907) #26	ENSPCIG00000029909	RPS23 (ENSPCIG00000029904) #28	ENSPCIG00000029902 #28	ENSPCIG00000029901 #29	ENSPCIG00000029899	ENSPCIG00000029898	ENSPCIG00000032700 #33	XRCC4 (ENSPCIG00000029896) #34	ENSPCIG00000029893 #35	HAPLN1 (ENSPCIG00000007780) #37	EDIL3 (ENSPCIG00000006442)
Common wonbat	MODERN SPECIES	1013	CARTPT (ENSVURG00010018567)	MCCC2 (ENSVURG00010018561)	ENSVURG00010018525	ENSVURG00010018487	ENSVURG00010018462	OCLN (ENSVURG00010018447)	MARVELD2 (ENSVURG00010018433)	RAD17 (ENSVURG00010018414)	ENSVURG00010018403	CCDC125 (ENSVURG00010018389)	ENSVURG00010018375 #15	ANKRD34B (ENSVURG00010018370) #17	ENSVURG00010018365 #18	ENSVURG00010018314 #19	RASGRF2 (ENSVURG00010018013) #21	CKMT2 (ENSVURG00010017961) #22	ZCCHC9 (ENSVURG00010017952) #23	ACOT12 (ENSVURG00010017946) #24	SSBP2 (ENSVURG00010017922) #25	ENSVURG00010017901	ATG10 (ENSVURG00010017892) #26	ENSVURG00010017874 #28	ENSVURG00010017862 #33	XRCC4 (ENSVURG00010017856) #34	ENSVURG00010017848 #35	HAPLN1 (ENSVURG00010017842) #37	EDIL3 (ENSVURG00010017835)	ENSVURG00010017826	ENSVURG00010017815	ENSVURG00010017806	ENSVURG00010017797
Wallaby	MODERN SPECIES	3723																ENSMEUG00000012918 #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000004707	ENSSHAG00000001107	ENSSHAG00000024555	ENSSHAG00000001499	ENSSHAG00000003043	ENSSHAG00000017367	MARVELD2 (ENSSHAG00000017250)	RAD17 (ENSSHAG00000015220)	ENSSHAG00000027892	ENSSHAG00000017082	ENSSHAG00000016920 #15	ENSSHAG00000026793 #17	ENSSHAG00000016538 #18	MSH3 (ENSSHAG00000016015) #19	RASGRF2 (ENSSHAG00000014847) #21	CKMT2 (ENSSHAG00000014606) #22	ZCCHC9 (ENSSHAG00000014504) #23	ACOT12 (ENSSHAG00000014213) #24	SSBP2 (ENSSHAG00000013397) #25	ENSSHAG00000008505 #26	ENSSHAG00000028481 #28	ENSSHAG00000008347 ##28	ENSSHAG00000030156	ENSSHAG00000007765 #29	TMEM167A (ENSSHAG00000029456) #33	XRCC4 (ENSSHAG00000009690) #34	ENSSHAG00000007330 #35	HAPLN1 (ENSSHAG00000022951) #37	EDIL3 (ENSSHAG00000005209)	ENSSHAG00000006286	COX7C (ENSSHAG00000026810)
Platypus	MODERN SPECIES		ENSOANG00000038950	ENSOANG00000043463	ENSOANG00000001626	ENSOANG00000001624	OCLN (ENSOANG00000001620)	MARVELD2 (ENSOANG00000001618)	RAD17 (ENSOANG00000001617)	AK6 (ENSOANG00000041106)	CCDC125 (ENSOANG00000045172)	ENSOANG00000001613 #15	FAM151B (ENSOANG00000001610) #16	ANKRD34B (ENSOANG00000001609) #17	ENSOANG00000001607 #18	MSH3 (ENSOANG00000001605) #19	RASGRF2 (ENSOANG00000001603) #21	CKMT2 (ENSOANG00000014771) #22	ZCCHC9 (ENSOANG00000014769) #23	ACOT12 (ENSOANG00000014768) #24	SSBP2 (ENSOANG00000014767) #25	ATG10 (ENSOANG00000020641) #26	ENSOANG00000031637 #29	TMEM167A (ENSOANG00000014766) #33	ENSOANG00000014765 #34	ENSOANG00000014761 #35	HAPLN1 (ENSOANG00000014760) #37	EDIL3 (ENSOANG00000014759)	ENSOANG00000048884	COX7C (ENSOANG00000014755)	RASA1 (ENSOANG00000014753)	CCNH (ENSOANG00000014752)	TMEM161B (ENSOANG00000011078)
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.b ##28	ENSGT01040000240833	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000154136	ENSGT00940000158144
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Laterata	ANCESTRAL SPECIES	8	ENSGT00390000012762	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Common wall lizard	MODERN SPECIES	2	CARTPT (ENSPMRG00000010926)	MCCC2 (ENSPMRG00000010948)	ENSPMRG00000011058	ENSPMRG00000011064	ENSPMRG00000011084	ANAPC2 (ENSPMRG00000011121)	OCLN (ENSPMRG00000011125)	MARVELD2 (ENSPMRG00000011132)	RAD17 (ENSPMRG00000011152)	AK6 (ENSPMRG00000011213)	CCDC125 (ENSPMRG00000011219)	ENSPMRG00000011301 #15	FAM151B (ENSPMRG00000011449) #16	MSH3 (ENSPMRG00000011469) #19	RASGRF2 (ENSPMRG00000011673) #21	CKMT2 (ENSPMRG00000012410) #22	ZCCHC9 (ENSPMRG00000012418) #23	ACOT12 (ENSPMRG00000012439) #24	SSBP2 (ENSPMRG00000012480) #25	ATG10 (ENSPMRG00000012525) #26	ENSPMRG00000012528	ENSPMRG00000012529	RPS23 (ENSPMRG00000012532) #28	ENSPMRG00000012535 ##28	ENSPMRG00000012537	ENSPMRG00000012542 #29	TMEM167A (ENSPMRG00000012546) #33	XRCC4 (ENSPMRG00000012553) #34	ENSPMRG00000012564 #35	ENSPMRG00000012576 #35	ENSPMRG00000012606
Argentine black and white tegu	MODERN SPECIES	10	ENSSMRG00000006391	ENSSMRG00000006407	ENSSMRG00000006412	ENSSMRG00000006413	OCLN (ENSSMRG00000006420)	MARVELD2 (ENSSMRG00000006425)	RAD17 (ENSSMRG00000006429)	AK6 (ENSSMRG00000006443)	CCDC125 (ENSSMRG00000006448)	ENSSMRG00000006476 #15	FAM151B (ENSSMRG00000006499) #16	ANKRD34B (ENSSMRG00000006500) #17	ENSSMRG00000006501 #18	MSH3 (ENSSMRG00000006503) #19	RASGRF2 (ENSSMRG00000006530) #21	CKMT2 (ENSSMRG00000006550) #22	ZCCHC9 (ENSSMRG00000006556) #23	ENSSMRG00000006560	SSBP2 (ENSSMRG00000006585) #25	ENSSMRG00000006600	ATG10 (ENSSMRG00000006616) #26	RPS23 (ENSSMRG00000006623) #28	ENSSMRG00000006633	ENSSMRG00000006627	ENSSMRG00000006636 #29	TMEM167A (ENSSMRG00000006663) #33	XRCC4 (ENSSMRG00000006677) #34	VCAN (ENSSMRG00000006719) #35	HAPLN1 (ENSSMRG00000007276) #37	ENSSMRG00000007280	EDIL3 (ENSSMRG00000007329)
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000240833	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00390000018086
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000161793.cb	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.b.a.a ##28	ENSGT00550000074784.b.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771.fb.a	ENSGT00940000155771.fb.b	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833.e	ENSGT00550000074784.b.a.a ##28	ENSGT00550000074784.b.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	7487																ENSLLTG00000008465 #22
Blue-lipped sea krait	MODERN SPECIES	2256																ENSLLTG00000002735 #22
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000161793.cb	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771.fb.a	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833.e	ENSGT00550000074784.b.a.a ##28	ENSGT00550000074784.b.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01030000235102	ENSGT00940000155846
Mainland tiger snake	MODERN SPECIES	1					ENSNSUG00000004661	MARVELD2 (ENSNSUG00000004662)	RAD17 (ENSNSUG00000004663)	AK6 (ENSNSUG00000004664)	CCDC125 (ENSNSUG00000004665)	ENSNSUG00000004666 #15	FAM151B (ENSNSUG00000004667) #16	ANKRD34B (ENSNSUG00000004668) #17	ENSNSUG00000004669 #18	MSH3 (ENSNSUG00000004670) #19	RASGRF2 (ENSNSUG00000004672) #21	CKMT2 (ENSNSUG00000004674) #22	ZCCHC9 (ENSNSUG00000004677) #23	ENSNSUG00000004679	SSBP2 (ENSNSUG00000004681) #25	ATG10 (ENSNSUG00000004695) #26	ENSNSUG00000004696	ENSNSUG00000004701 ##28	ENSNSUG00000004706 #29	TMEM167A (ENSNSUG00000004709) #33	XRCC4 (ENSNSUG00000004725) #34	ENSNSUG00000004844 #35	HAPLN1 (ENSNSUG00000004848) #37	EDIL3 (ENSNSUG00000004852)	ENSNSUG00000004860	ENSNSUG00000004862	RASA1 (ENSNSUG00000004867)
Eastern brown snake	MODERN SPECIES	2	ENSPTXG00000000050	NAIP (ENSPTXG00000000077)	ENSPTXG00000000272	OCLN (ENSPTXG00000000287)	MARVELD2 (ENSPTXG00000000298)	RAD17 (ENSPTXG00000000320)	AK6 (ENSPTXG00000000337)	CCDC125 (ENSPTXG00000000386)	ENSPTXG00000000690 #15	FAM151B (ENSPTXG00000000697) #16	ANKRD34B (ENSPTXG00000000701) #17	ENSPTXG00000000704 #18	ENSPTXG00000000708 #19	ENSPTXG00000000711 #19	RASGRF2 (ENSPTXG00000000819) #21	CKMT2 (ENSPTXG00000004676) #22	ZCCHC9 (ENSPTXG00000004677) #23	ACOT12 (ENSPTXG00000004678) #24	SSBP2 (ENSPTXG00000004679) #25	ATG10 (ENSPTXG00000004680) #26	ENSPTXG00000004681	ENSPTXG00000004682 ##28	ENSPTXG00000004683 ##28	ENSPTXG00000004684	ENSPTXG00000004685 #29	ENSPTXG00000004686	TMEM167A (ENSPTXG00000004687) #33	XRCC4 (ENSPTXG00000004688) #34	ENSPTXG00000004708 #35	HAPLN1 (ENSPTXG00000004709) #37	EDIL3 (ENSPTXG00000004710)
Indian cobra	MODERN SPECIES	1	ENSNNAG00000002907	ENSNNAG00000002919	NAIP (ENSNNAG00000002888)	ENSNNAG00000002867	OCLN (ENSNNAG00000002861)	MARVELD2 (ENSNNAG00000002854)	RAD17 (ENSNNAG00000002826)	AK6 (ENSNNAG00000002813)	CCDC125 (ENSNNAG00000002811)	ENSNNAG00000002786 #15	FAM151B (ENSNNAG00000002773) #16	ANKRD34B (ENSNNAG00000002768) #17	ENSNNAG00000002758 #18	MSH3 (ENSNNAG00000002548) #19	RASGRF2 (ENSNNAG00000002418) #21	CKMT2 (ENSNNAG00000002396) #22	ZCCHC9 (ENSNNAG00000002384) #23	SSBP2 (ENSNNAG00000002360) #25	ATG10 (ENSNNAG00000002344) #26	ENSNNAG00000002336 ##28	ENSNNAG00000002327 ##28	ENSNNAG00000002308	ENSNNAG00000002292 #29	ENSNNAG00000002286	TMEM167A (ENSNNAG00000002280) #33	XRCC4 (ENSNNAG00000002227) #34	ENSNNAG00000002196 #35	HAPLN1 (ENSNNAG00000002181) #37	EDIL3 (ENSNNAG00000002046)	ENSNNAG00000002013	RASA1 (ENSNNAG00000001568)
Lizard	MODERN SPECIES	1	ENSACAG00000010086	ENSACAG00000010109	OCLN (ENSACAG00000022344)	MARVELD2 (ENSACAG00000036496)	RAD17 (ENSACAG00000010254)	AK6 (ENSACAG00000035482)	CCDC125 (ENSACAG00000010353)	ENSACAG00000010379 #15	FAM151B (ENSACAG00000010503) #16	ENSACAG00000037201	ENSACAG00000010508 #18	ENSACAG00000045096	MSH3 (ENSACAG00000010533) #19	ENSACAG00000038186	RASGRF2 (ENSACAG00000010696) #21	CKMT2 (ENSACAG00000010857) #22	ZCCHC9 (ENSACAG00000010965) #23	ACOT12 (ENSACAG00000010998) #24	SSBP2 (ENSACAG00000029227) #25	ENSACAG00000045454	ATG10 (ENSACAG00000038343) #26	ENSACAG00000035602	RPS23 (ENSACAG00000044983) #28	ENSACAG00000011136	ENSACAG00000037915 #29	TMEM167A (ENSACAG00000011153) #33	XRCC4 (ENSACAG00000011160) #34	ENSACAG00000037657	VCAN (ENSACAG00000011195) #35	ENSACAG00000037910	HAPLN1 (ENSACAG00000011432) #37
tuatara	MODERN SPECIES	253															RASGRF2 (ENSSPUG00000004493) #21	CKMT2 (ENSSPUG00000004562) #22	ZCCHC9 (ENSSPUG00000004588) #23	ACOT12 (ENSSPUG00000004601) #24	SSBP2 (ENSSPUG00000004621) #25	ENSSPUG00000004635	ENSSPUG00000004644	ATG10 (ENSSPUG00000004666) #26	RPS23 (ENSSPUG00000004682) #28	ENSSPUG00000004697 ##28	ENSSPUG00000004701 #29	ENSSPUG00000004713 #33	XRCC4 (ENSSPUG00000004715) #34	ENSSPUG00000004729 #35	ENSSPUG00000004789 #35	HAPLN1 (ENSSPUG00000004798) #37
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.b ##28	ENSGT01040000240833	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT01040000240833	ENSGT00550000074784.a.a #28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000240833	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Emydidae	ANCESTRAL SPECIES	7	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000240833	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Three-toed box turtle	MODERN SPECIES	29	ENSTMTG00000011637	ENSTMTG00000011654	ENSTMTG00000011664	ENSTMTG00000011681	OCLN (ENSTMTG00000011709)	MARVELD2 (ENSTMTG00000011733)	RAD17 (ENSTMTG00000011758)	AK6 (ENSTMTG00000011795)	CCDC125 (ENSTMTG00000011821)	ENSTMTG00000011862 #15	FAM151B (ENSTMTG00000011897) #16	ANKRD34B (ENSTMTG00000011931) #17	ENSTMTG00000011943 #18	MSH3 (ENSTMTG00000011972) #19	RASGRF2 (ENSTMTG00000012030) #21	CKMT2 (ENSTMTG00000012229) #22	ZCCHC9 (ENSTMTG00000012264) #23	ENSTMTG00000012276	SSBP2 (ENSTMTG00000012293) #25	ATG10 (ENSTMTG00000012339) #26	ENSTMTG00000012462 #28	ENSTMTG00000012480 #29	ENSTMTG00000012494	TMEM167A (ENSTMTG00000012521) #33	XRCC4 (ENSTMTG00000012541) #34	ENSTMTG00000012555 #35	ENSTMTG00000012578 #35	HAPLN1 (ENSTMTG00000012604) #37	EDIL3 (ENSTMTG00000012653)	COX7C (ENSTMTG00000012967)	RASA1 (ENSTMTG00000012988)
painted turtle	MODERN SPECIES	695	ENSCPBG00000010973	ENSCPBG00000010971	ENSCPBG00000010968	ENSCPBG00000010955	OCLN (ENSCPBG00000010945)	MARVELD2 (ENSCPBG00000010937)	RAD17 (ENSCPBG00000010919)	AK6 (ENSCPBG00000010913)	CCDC125 (ENSCPBG00000010907)	ENSCPBG00000010899 #15	ANKRD34B (ENSCPBG00000010896) #17	FAM151B (ENSCPBG00000010885) #16	ENSCPBG00000010879 #18	MSH3 (ENSCPBG00000010853) #19	RASGRF2 (ENSCPBG00000010831) #21	CKMT2 (ENSCPBG00000010825) #22	ZCCHC9 (ENSCPBG00000010819) #23	ACOT12 (ENSCPBG00000010812) #24	SSBP2 (ENSCPBG00000010799) #25	ATG10 (ENSCPBG00000010761) #26	ENSCPBG00000010753	RPS23 (ENSCPBG00000010751) #28	ENSCPBG00000010748	ENSCPBG00000010746 ##28	ENSCPBG00000010740 #29	TMEM167A (ENSCPBG00000010731) #33	XRCC4 (ENSCPBG00000010726) #34	VCAN (ENSCPBG00000010709) #35	HAPLN1 (ENSCPBG00000010699) #37	EDIL3 (ENSCPBG00000010684)	ENSCPBG00000010674
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01040000240833.b	ENSGT00550000074784.a.a #28	ENSGT01040000240833.a	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Goode s thornscrub tortoise	MODERN SPECIES	20	ENSGEVG00005001541	ENSGEVG00005001520	ENSGEVG00005001437	ENSGEVG00005001341	ENSGEVG00005001318	MARVELD2 (ENSGEVG00005001302)	RAD17 (ENSGEVG00005001202)	AK6 (ENSGEVG00005012470)	CCDC125 (ENSGEVG00005012441)	ENSGEVG00005012389 #15	FAM151B (ENSGEVG00005012364) #16	ANKRD34B (ENSGEVG00005012345) #17	ENSGEVG00005012322 #18	MSH3 (ENSGEVG00005012182) #19	RASGRF2 (ENSGEVG00005011594) #21	CKMT2 (ENSGEVG00005011478) #22	ZCCHC9 (ENSGEVG00005011427) #23	ACOT12 (ENSGEVG00005010989) #24	SSBP2 (ENSGEVG00005010855) #25	ATG10 (ENSGEVG00005010800) #26	ENSGEVG00005010746	ENSGEVG00005010649 ##28	RPS23 (ENSGEVG00005010591) #28	ENSGEVG00005010461	ENSGEVG00005010430 #29	TMEM167A (ENSGEVG00005010408) #33	XRCC4 (ENSGEVG00005010349) #34	ENSGEVG00005010286 #35	ENSGEVG00005010195 #35	HAPLN1 (ENSGEVG00005010002) #37	EDIL3 (ENSGEVG00005009290)
Abingdon island giant tortoise	MODERN SPECIES	111												ENSCABG00000019019 #18	MSH3 (ENSCABG00000019035) #19	RASGRF2 (ENSCABG00000019283) #21	ENSCABG00000019289	CKMT2 (ENSCABG00000019290) #22
Chinese turtle	MODERN SPECIES	1168	ENSPSIG00000014765	ENSPSIG00000014777	ENSPSIG00000014787	ENSPSIG00000014792	OCLN (ENSPSIG00000014805)	RAD17 (ENSPSIG00000014945)	AK6 (ENSPSIG00000015082)	CCDC125 (ENSPSIG00000015089)	ENSPSIG00000000799	ENSPSIG00000015107 #15	ANKRD34B (ENSPSIG00000000806) #17	ENSPSIG00000015226 #18	MSH3 (ENSPSIG00000015278) #19	ENSPSIG00000015542	RASGRF2 (ENSPSIG00000015555) #21	CKMT2 (ENSPSIG00000015748) #22	ZCCHC9 (ENSPSIG00000015854) #23	ACOT12 (ENSPSIG00000015897) #24	SSBP2 (ENSPSIG00000015983) #25	ATG10 (ENSPSIG00000015998) #26	RPS23 (ENSPSIG00000016006) #28	ENSPSIG00000016011 ##28	ENSPSIG00000016026 #29	TMEM167A (ENSPSIG00000016032) #33	XRCC4 (ENSPSIG00000016043) #34	VCAN (ENSPSIG00000016053) #35	HAPLN1 (ENSPSIG00000016121) #37	EDIL3 (ENSPSIG00000016123)
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00940000163559	ENSGT00490000043395	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT01040000241481	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846
Aves	ANCESTRAL SPECIES	4	ENSGT00940000155949	ENSGT00390000012762.h	ENSGT00940000161793	ENSGT00940000153352.A	ENSGT00490000043395	ENSGT00940000155771	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Neognathae	ANCESTRAL SPECIES	19	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Anatidae	ANCESTRAL SPECIES	91	ENSGT00940000158156 #29	ENSGT00550000074784.a.a #28	ENSGT00390000000924 #26	ENSGT00950000183049.A #25	ENSGT00940000160328 #24	ENSGT00950000183041.C #23	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22
Duck	MODERN SPECIES	4281	ENSAPLG00000005367 #29	RPS23 (ENSAPLG00000023076) #28	ATG10 (ENSAPLG00000005440) #26	SSBP2 (ENSAPLG00000005451) #25	ACOT12 (ENSAPLG00000005659) #24	ZCCHC9 (ENSAPLG00000005968) #23	RAD17 (ENSAPLG00000006015)	AK6 (ENSAPLG00000024406)	CCDC125 (ENSAPLG00000006296)	ENSAPLG00000006547 #15	FAM151B (ENSAPLG00000026983) #16	ANKRD34B (ENSAPLG00000000654) #17	ENSAPLG00000007336 #18	MSH3 (ENSAPLG00000007056) #19	RASGRF2 (ENSAPLG00000006824) #21	CKMT2 (ENSAPLG00000006717) #22	ENSAPLG00000021795	ENSAPLG00000030349	ENSAPLG00000031127	ERAP1 (ENSAPLG00000006509)	ENSAPLG00000020005	ENSAPLG00000030752	PCSK1 (ENSAPLG00000005737)	ELL2 (ENSAPLG00000005474)	GLRX (ENSAPLG00000022742)	RHOBTB3 (ENSAPLG00000005201)	RFESD (ENSAPLG00000028000)	ARSK (ENSAPLG00000005029)	SKIC3 (ENSAPLG00000004474)	FAM81B (ENSAPLG00000004389)	ENSAPLG00000019072
Pink-footed goose	MODERN SPECIES	141	ENSABRG00000008899 #29	RPS23 (ENSABRG00000008885) #28	ATG10 (ENSABRG00000008857) #26	SSBP2 (ENSABRG00000008433) #25	ACOT12 (ENSABRG00000008346) #24	ENSABRG00000008304	RAD17 (ENSABRG00000008290)	AK6 (ENSABRG00000008278)	CCDC125 (ENSABRG00000008267)	ENSABRG00000008241 #15	FAM151B (ENSABRG00000008197) #16	ANKRD34B (ENSABRG00000008193) #17	ENSABRG00000008188 #18	MSH3 (ENSABRG00000008158) #19	RASGRF2 (ENSABRG00000008085) #21	CKMT2 (ENSABRG00000008063) #22
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.k.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01070000254325.a.b.a	ENSGT00390000018086
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.b ##28	ENSGT01030000234916	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102.k.a #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT01070000254325.a.b.a	ENSGT00390000018086
Chicken	MODERN SPECIES	131	ENSGALG00010006062	ENSGALG00010006520	ENSGALG00010007395	ENSGALG00010007380	ENSGALG00010007372	ENSGALG00010007355	RAD17 (ENSGALG00010007344)	AK6 (ENSGALG00010007322)	CCDC125 (ENSGALG00010007300)	ENSGALG00010007284 #15	FAM151B (ENSGALG00010007277) #16	ANKRD34B (ENSGALG00010007259) #17	DHFR (ENSGALG00010007224) #18	MSH3 (ENSGALG00010007217) #19	RASGRF2 (ENSGALG00010007166) #21	CKMT2 (ENSGALG00010007143) #22	ZCCHC9 (ENSGALG00010007097) #23	ACOT12 (ENSGALG00010006588) #24	SSBP2 (ENSGALG00010006575) #25	ATG10 (ENSGALG00010006223) #26	RPS23 (ENSGALG00010006178) ##28	ATP6AP1L (ENSGALG00010006121) #29	ENSGALG00010006923	TMEM167A (ENSGALG00010006851) #33	XRCC4 (ENSGALG00010006821) #34	VCAN (ENSGALG00010006739) #35	HAPLN1 (ENSGALG00010006730) #37	EDIL3 (ENSGALG00010006096)	ENSGALG00010005481	ENSGALG00010006257	COX7C (ENSGALG00010006252)
Turkey	MODERN SPECIES	1299	PLPPR1 (ENSMGAG00000004120)	MRPL50 (ENSMGAG00000016023)	ALDOB (ENSMGAG00000006711)	PGAP4 (ENSMGAG00000002985)	RNF20 (ENSMGAG00000001223)	GRIN3A (ENSMGAG00000001194)	RAD17 (ENSMGAG00000002053)	ENSMGAG00000001810	CCDC125 (ENSMGAG00000006043)	ENSMGAG00000010487 #15	FAM151B (ENSMGAG00000017722) #16	ANKRD34B (ENSMGAG00000016059) #17	ENSMGAG00000002698 #18	MSH3 (ENSMGAG00000008310) #19	RASGRF2 (ENSMGAG00000008333) #21	CKMT2 (ENSMGAG00000007813) #22	ZCCHC9 (ENSMGAG00000006841) #23	ACOT12 (ENSMGAG00000021238) #24	SSBP2 (ENSMGAG00000020044) #25	ENSMGAG00000020585	RPS23 (ENSMGAG00000016932) #28	ENSMGAG00000003952 #29	XRCC4 (ENSMGAG00000018677) #34	ENSMGAG00000017132 #35	ENSMGAG00000020009 #35	ENSMGAG00000020049 #35	HAPLN1 (ENSMGAG00000020012) #37	EDIL3 (ENSMGAG00000022807)	ENSMGAG00000008654	COX7C (ENSMGAG00000019652)	RASA1 (ENSMGAG00000008292)
Japanese quail	MODERN SPECIES	699	MRPL50 (ENSCJPG00005001258)	ALDOB (ENSCJPG00005001253)	PGAP4 (ENSCJPG00005001250)	RNF20 (ENSCJPG00005001239)	GRIN3A (ENSCJPG00005001233)	ENSCJPG00005001218	RAD17 (ENSCJPG00005001194)	AK6 (ENSCJPG00005001190)	CCDC125 (ENSCJPG00005001183)	ENSCJPG00005000738 #15	FAM151B (ENSCJPG00005000734) #16	ANKRD34B (ENSCJPG00005000731) #17	ENSCJPG00005000728 #18	MSH3 (ENSCJPG00005000723) #19	RASGRF2 (ENSCJPG00005000719) #21	CKMT2 (ENSCJPG00005000716) #22	ZCCHC9 (ENSCJPG00005000711) #23	ACOT12 (ENSCJPG00005000706) #24	SSBP2 (ENSCJPG00005000692) #25	ATG10 (ENSCJPG00005000682) #26	TMEM167A (ENSCJPG00005000681) #33	XRCC4 (ENSCJPG00005000577) #34	VCAN (ENSCJPG00005000555) #35	HAPLN1 (ENSCJPG00005000544) #37	EDIL3 (ENSCJPG00005000531)	RPS23 (ENSCJPG00005000525) #28	ENSCJPG00005000521 #29	ENSCJPG00005000513	COX7C (ENSCJPG00005000502)	RASA1 (ENSCJPG00005000488)	CCNH (ENSCJPG00005000482)
Neognathae_b	DUPLICATION
Neognathae_b	DUPLICATION
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Common canary	MODERN SPECIES	206																ENSSCAG00000004228 #22
Medium ground finch	MODERN SPECIES	474																ENSGFOG00000003945 #22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.a #22
Kakapo	MODERN SPECIES	4	ENSSHBG00005010945	ENSSHBG00005011005	ENSSHBG00005011077	ENSSHBG00005011098	ENSSHBG00005011157	ENSSHBG00005011326	ENSSHBG00005000971	ENSSHBG00005000975	ENSSHBG00005000987	ENSSHBG00005000997	ENSSHBG00005001000	ENSSHBG00005001002	ENSSHBG00005001006	ENSSHBG00005001009	ENSSHBG00005001010	ENSSHBG00005001012 #22	ENSSHBG00005001015	ENSSHBG00005001017	ENSSHBG00005001020	ENSSHBG00005001023	ENSSHBG00005001025
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.e.b #22
Medium ground finch	MODERN SPECIES	134						RAD17 (ENSGFOG00000004551)	AK6 (ENSGFOG00000004528)	ENSGFOG00000004485	ENSGFOG00000004471	ENSGFOG00000004455 #15	FAM151B (ENSGFOG00000004436) #16	ANKRD34B (ENSGFOG00000004424) #17	ENSGFOG00000004376 #18	MSH3 (ENSGFOG00000004209) #19	RASGRF2 (ENSGFOG00000004158) #21	ENSGFOG00000004036 #22	ZCCHC9 (ENSGFOG00000004014) #23	ACOT12 (ENSGFOG00000003959) #24	SSBP2 (ENSGFOG00000003918) #25	ATG10 (ENSGFOG00000003901) #26	ENSGFOG00000003887	RPS23 (ENSGFOG00000003868) ##28	ENSGFOG00000003856 #29	TMEM167A (ENSGFOG00000003850) #33	XRCC4 (ENSGFOG00000003823) #34	VCAN (ENSGFOG00000003782) #35	HAPLN1 (ENSGFOG00000003764) #37	EDIL3 (ENSGFOG00000003723)
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634	ENSGT00390000000672.a.b
Passeriformes	ANCESTRAL SPECIES	44	ENSGT00940000163364	ENSGT00990000206046	ENSGT01060000248825	ENSGT00390000006970	ENSGT00990000204708	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Great tit	MODERN SPECIES	642	DCAF10 (ENSPMJG00000001551)	TRMT10B (ENSPMJG00000001524)	FRMPD1 (ENSPMJG00000001495)	TOMM5 (ENSPMJG00000001485)	EMC4 (ENSPMJG00000001467)	EXOSC5 (ENSPMJG00000001459)	RAD17 (ENSPMJG00000001446)	AK6 (ENSPMJG00000001441)	CCDC125 (ENSPMJG00000001412)	ENSPMJG00000001322 #15	FAM151B (ENSPMJG00000001314) #16	ANKRD34B (ENSPMJG00000001309) #17	ENSPMJG00000001288 #18	MSH3 (ENSPMJG00000000269) #19	RASGRF2 (ENSPMJG00000000142) #21	CKMT2 (ENSPMJG00000014299) #22	ZCCHC9 (ENSPMJG00000014297) #23	ACOT12 (ENSPMJG00000014296) #24	SSBP2 (ENSPMJG00000014294) #25	ATG10 (ENSPMJG00000014291) #26	ENSPMJG00000014290	ENSPMJG00000014289 ##28	ENSPMJG00000014288 #29	TMEM167A (ENSPMJG00000014283) #33	XRCC4 (ENSPMJG00000014280) #34	VCAN (ENSPMJG00000014262) #35	HAPLN1 (ENSPMJG00000014261) #37	EDIL3 (ENSPMJG00000014240)	COX7C (ENSPMJG00000014193)	MEGF10 (ENSPMJG00000014184)	PRRC1 (ENSPMJG00000014182)
Passeriformes_d	ANCESTRAL SPECIES	40	ENSGT00940000163364	ENSGT00990000206046	ENSGT01060000248825	ENSGT00390000006970	ENSGT00990000204708	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Passeriformes_g	ANCESTRAL SPECIES	48	ENSGT00530000063169.b.a	ENSGT00950000183035.b	ENSGT00940000163364	ENSGT01060000248825	ENSGT00390000006970	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Passeroidea	ANCESTRAL SPECIES	47	ENSGT00530000063169.b.a	ENSGT00950000183035.b	ENSGT00940000163364	ENSGT01060000248825	ENSGT00390000006970	ENSGT00940000153348.C	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.a #28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086
Zebra finch	MODERN SPECIES	104	FRMPD1 (ENSTGUG00000007140)	TOMM5 (ENSTGUG00000007138)	ENSTGUG00000021319	EMC4 (ENSTGUG00000007133)	EXOSC5 (ENSTGUG00000014136)	ENSTGUG00000026614	RAD17 (ENSTGUG00000017526)	AK6 (ENSTGUG00000028726)	CCDC125 (ENSTGUG00000017531)	ENSTGUG00000017532 #15	FAM151B (ENSTGUG00000024248) #16	ANKRD34B (ENSTGUG00000007120) #17	ENSTGUG00000007110 #18	MSH3 (ENSTGUG00000007066) #19	RASGRF2 (ENSTGUG00000007037) #21	CKMT2 (ENSTGUG00000007005) #22	ZCCHC9 (ENSTGUG00000006994) #23	ACOT12 (ENSTGUG00000006971) #24	SSBP2 (ENSTGUG00000006949) #25	ATG10 (ENSTGUG00000006943) #26	ENSTGUG00000006821	RPS23 (ENSTGUG00000017554) #28	ENSTGUG00000006935 #29	ENSTGUG00000021524	TMEM167A (ENSTGUG00000019292) #33	XRCC4 (ENSTGUG00000006911) #34	VCAN (ENSTGUG00000006883) #35	HAPLN1 (ENSTGUG00000006865) #37	EDIL3 (ENSTGUG00000006826)	COX7C (ENSTGUG00000006814)	ENSTGUG00000020662
Common canary	MODERN SPECIES	56	MELK (ENSSCAG00000009524)	PAX5 (ENSSCAG00000009511)	ZCCHC7 (ENSSCAG00000009494) ##23	ZBTB5 (ENSSCAG00000009485)	POLR1E (ENSSCAG00000009478)	DCAF10 (ENSSCAG00000009476)	RAD17 (ENSSCAG00000009425)	AK6 (ENSSCAG00000009418)	CCDC125 (ENSSCAG00000009413)	ENSSCAG00000009404 #15	FAM151B (ENSSCAG00000009398) #16	ENSSCAG00000009394 #17	ENSSCAG00000009393 #18	MSH3 (ENSSCAG00000009385) #19	RASGRF2 (ENSSCAG00000008895) #21	ENSSCAG00000008780 #22	ZCCHC9 (ENSSCAG00000008749) #23	ACOT12 (ENSSCAG00000008727) #24	SSBP2 (ENSSCAG00000008712) #25	ATG10 (ENSSCAG00000008706) #26	RPS23 (ENSSCAG00000008698) #28	ENSSCAG00000008690 #29	EDIL3 (ENSSCAG00000008613)	HAPLN1 (ENSSCAG00000008587) #37	VCAN (ENSSCAG00000008575) #35	XRCC4 (ENSSCAG00000008554) #34	TMEM167A (ENSSCAG00000008549) #33
Flycatcher	MODERN SPECIES	561	ENSFALG00000012909	ENSFALG00000012898	ENSFALG00000024727	ENSFALG00000012886	RAD17 (ENSFALG00000012863)	ENSFALG00000012854	CCDC125 (ENSFALG00000012850)	ENSFALG00000012844 #15	FAM151B (ENSFALG00000012837) #16	ANKRD34B (ENSFALG00000012833) #17	ENSFALG00000012822 #18	MSH3 (ENSFALG00000012814) #19	RASGRF2 (ENSFALG00000012784) #21	ZCCHC9 (ENSFALG00000012709) #23	ACOT12 (ENSFALG00000012700) #24	ENSFALG00000012745 #22	SSBP2 (ENSFALG00000012689) #25	ATG10 (ENSFALG00000012675) #26	RPS23 (ENSFALG00000012668) #28	ENSFALG00000012660 #29	TMEM167A (ENSFALG00000025743) #33	XRCC4 (ENSFALG00000012903) #34	VCAN (ENSFALG00000012891) #35	HAPLN1 (ENSFALG00000012880) #37	EDIL3 (ENSFALG00000023958)	ENSFALG00000027608	ENSFALG00000009108	ARSK (ENSFALG00000009095)	SKIC3 (ENSFALG00000009093)	MCTP1 (ENSFALG00000009081)	SLF1 (ENSFALG00000009078)
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158875	ENSGT00390000004279	ENSGT00950000182987.c.b	ENSGT00500000045018	ENSGT00390000002866.b	ENSGT00940000158571	ENSGT00440000039046	ENSGT00390000015930	ENSGT00440000039958	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00390000010283 #18	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a.f #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.A #25	ENSGT00390000000924 #26	ENSGT00550000074784.a.b ##28	ENSGT00550000074784.b ##28	ENSGT00940000158156 #29	ENSGT00940000155186 #33	ENSGT00390000017079 #34	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846.q	ENSGT00390000008634
Kakapo	MODERN SPECIES	19	NANS (ENSSHBG00005002674)	CLTA (ENSSHBG00005002638)	GNE (ENSSHBG00005002604)	ENSSHBG00005002587	ENSSHBG00005002541	RAD17 (ENSSHBG00005002493)	AK6 (ENSSHBG00005002469)	CCDC125 (ENSSHBG00005002431)	ZFYVE16 (ENSSHBG00005002389)	ENSSHBG00005002372 #15	FAM151B (ENSSHBG00005002341) #16	ENSSHBG00005002307 #18	ENSSHBG00005002294	MSH3 (ENSSHBG00005002186) #19	RASGRF2 (ENSSHBG00005002079) #21	ENSSHBG00005001986 #22	ZCCHC9 (ENSSHBG00005001941) #23	ACOT12 (ENSSHBG00005001923) #24	ENSSHBG00005001901	SSBP2 (ENSSHBG00005001883) #25	ATG10 (ENSSHBG00005001819) #26	ENSSHBG00005001802	RPS23 (ENSSHBG00005001774) ##28	ENSSHBG00005001734 #29	ENSSHBG00005001705	XRCC4 (ENSSHBG00005001575) #34	VCAN (ENSSHBG00005001512) #35	HAPLN1 (ENSSHBG00005001483) #37	ENSSHBG00005001456	EDIL3 (ENSSHBG00005001414)	COX7C (ENSSHBG00005004373)
Golden eagle	MODERN SPECIES	91	PLPPR1 (ENSACCG00020015068)	MRPL50 (ENSACCG00020015057)	ALDOB (ENSACCG00020015038)	PGAP4 (ENSACCG00020015021)	RNF20 (ENSACCG00020014919)	GRIN3A (ENSACCG00020014864)	RAD17 (ENSACCG00020014827)	AK6 (ENSACCG00020014804)	CCDC125 (ENSACCG00020014788)	ENSACCG00020014758 #15	FAM151B (ENSACCG00020014736) #16	ANKRD34B (ENSACCG00020014726) #17	ENSACCG00020014707 #18	MSH3 (ENSACCG00020014684) #19	RASGRF2 (ENSACCG00020014507) #21	CKMT2 (ENSACCG00020014280) #22	ZCCHC9 (ENSACCG00020014264) #23	ACOT12 (ENSACCG00020014240) #24	SSBP2 (ENSACCG00020014198) #25	ATG10 (ENSACCG00020014163) #26	ENSACCG00020014140 ##28	ENSACCG00020014125	ENSACCG00020014107 #29	TMEM167A (ENSACCG00020014094) #33	XRCC4 (ENSACCG00020014071) #34	VCAN (ENSACCG00020014055) #35	HAPLN1 (ENSACCG00020014033) #37	EDIL3 (ENSACCG00020013998)	COX7C (ENSACCG00020013971)	RASA1 (ENSACCG00020013845)	CCNH (ENSACCG00020013615)
African ostrich	MODERN SPECIES	1070	MCCC2 (ENSSCUG00000018915)	ENSSCUG00000018907	ENSSCUG00000018905	ENSSCUG00000018903	ENSSCUG00000018900	ENSSCUG00000018896	RAD17 (ENSSCUG00000018888)	AK6 (ENSSCUG00000018884)	CCDC125 (ENSSCUG00000018883)	ENSSCUG00000018879 #15	FAM151B (ENSSCUG00000018866) #16	ANKRD34B (ENSSCUG00000018864) #17	ENSSCUG00000018862 #18	MSH3 (ENSSCUG00000018855) #19	RASGRF2 (ENSSCUG00000018844) #21	CKMT2 (ENSSCUG00000018841) #22	ZCCHC9 (ENSSCUG00000018839) #23	ACOT12 (ENSSCUG00000018835) #24	SSBP2 (ENSSCUG00000018833) #25	ATG10 (ENSSCUG00000018827) #26	RPS23 (ENSSCUG00000018824) ##28	ENSSCUG00000018820 #29	TMEM167A (ENSSCUG00000018814) #33	XRCC4 (ENSSCUG00000018813) #34
Australian saltwater crocodile	MODERN SPECIES	29	ENSCPRG00005001212	ENSCPRG00005001219	ENSCPRG00005001238	ENSCPRG00005001278	ENSCPRG00005001294	MARVELD2 (ENSCPRG00005001318)	RAD17 (ENSCPRG00005001320)	AK6 (ENSCPRG00005001328)	CCDC125 (ENSCPRG00005001333)	ENSCPRG00005001388 #15	FAM151B (ENSCPRG00005001800) #16	ANKRD34B (ENSCPRG00005001804) #17	ENSCPRG00005001805 #18	MSH3 (ENSCPRG00005001827) #19	RASGRF2 (ENSCPRG00005001845) #21	CKMT2 (ENSCPRG00005001868) #22	ZCCHC9 (ENSCPRG00005001871) #23	ACOT12 (ENSCPRG00005001874) #24	SSBP2 (ENSCPRG00005001899) #25	ENSCPRG00005002064	ENSCPRG00005002080	ATG10 (ENSCPRG00005002089) #26	ENSCPRG00005002095	RPS23 (ENSCPRG00005002101) #28	ENSCPRG00005002107	ENSCPRG00005002110 ##28	ENSCPRG00005002117 #29	TMEM167A (ENSCPRG00005002127) #33	XRCC4 (ENSCPRG00005002138) #34	VCAN (ENSCPRG00005002150) #35	HAPLN1 (ENSCPRG00005002178) #37
Coelacanth	MODERN SPECIES	1394															RASGRF2 (ENSLACG00000010484) #21	CKMT2 (ENSLACG00000009531) #22	ZCCHC9 (ENSLACG00000009223) #23	ACOT12 (ENSLACG00000008635) #24	SSBP2 (ENSLACG00000003460) #25
Actinopterygii	ANCESTRAL SPECIES	67			ENSGT00440000039046	ENSGT00390000015930	ENSGT00940000155771	ENSGT00730000110989	ENSGT00490000043395	ENSGT00940000159086	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000165661	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.E ##25	ENSGT00390000000924 #26	ENSGT00940000155186 #33	ENSGT00940000166544	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b	ENSGT00940000157995
Neopterygii	ANCESTRAL SPECIES	46	ENSGT01030000234598.b.b	ENSGT00940000159086	ENSGT00490000043395	ENSGT00730000110989	ENSGT00940000155771	ENSGT00390000015930	ENSGT00440000039046	ENSGT00940000166823	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00530000063681.b.a #16	ENSGT00390000012355.A.a #17	ENSGT00940000165661	ENSGT00550000074949 #19	ENSGT00940000155679 #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.E ##25	ENSGT00390000000924 #26	ENSGT00940000166014	ENSGT00940000155186 #33	ENSGT00940000166544	ENSGT00940000156102 #35	ENSGT00940000159267 #37	ENSGT00940000158144	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b	ENSGT00940000157492.b
Spotted gar	MODERN SPECIES	658	aqp3b (ENSLOCG00000005015)	ENSLOCG00000005052	ENSLOCG00000005080	ENSLOCG00000005065	WDR54 (ENSLOCG00000005095)	rhobtb4 (ENSLOCG00000005114)	ENSLOCG00000005134	ENSLOCG00000005151	rtknb (ENSLOCG00000005167)	ENSLOCG00000005189 #15	fam151b (ENSLOCG00000005204) #16	ankrd34bb (ENSLOCG00000017523) #17	dhfr (ENSLOCG00000005217)	msh3 (ENSLOCG00000005233) #19	rasgrf2b (ENSLOCG00000005270) #21	ckmt2a (ENSLOCG00000005314) #22	zcchc9 (ENSLOCG00000005331) #23	ACOT12 (ENSLOCG00000005352) #24	gfm2 (ENSLOCG00000005368)	nsa2 (ENSLOCG00000005380)	FAM169A (ENSLOCG00000005396)	gcnt4a (ENSLOCG00000017524)	ENSLOCG00000005414	hmgcra (ENSLOCG00000005433)	CERT1 (ENSLOCG00000005451)	POLK (ENSLOCG00000005477)	ANKDD1B (ENSLOCG00000005494)	ENSLOCG00000005510	sv2ca (ENSLOCG00000005520)	iqgap2 (ENSLOCG00000005540)	F2RL2 (ENSLOCG00000017525)
Osteoglossocephalai	ANCESTRAL SPECIES	132										ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.E ##25	ENSGT00390000000924 #26	ENSGT00940000166014	ENSGT00940000155186 #33	ENSGT00940000166544	ENSGT00940000156102.r #35	ENSGT00940000159267 #37	ENSGT00940000158144.b	ENSGT00940000158144.a	ENSGT00390000018086	ENSGT00940000155846	ENSGT00390000008634	ENSGT00390000000672.a.b
Clupeocephala	ANCESTRAL SPECIES	370									ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000163574	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT00550000074856.d
Euteleosteomorpha	ANCESTRAL SPECIES	53													ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a #22	ENSGT00390000001362.a	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.c.a	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00940000155101.e	ENSGT00970000197628	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES	15	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d	ENSGT01030000234539.b.b.a.i
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Tiger tail seahorse	MODERN SPECIES	485	ENSHCOG00000004786	ENSHCOG00000004799	ENSHCOG00000004806	pitpnb (ENSHCOG00000004815)	pitpnb (ENSHCOG00000004846)	NAA25 (ENSHCOG00000000876)	brap (ENSHCOG00000004954)	tor4aa (ENSHCOG00000004966)	zgc:56235 (ENSHCOG00000004980)	SLC25A1 (ENSHCOG00000005007)	ENSHCOG00000005017	pi4kaa (ENSHCOG00000005042)	MARVELD2 (ENSHCOG00000005055)	oclna (ENSHCOG00000005062)	ENSHCOG00000005085 #21	ckmt2a (ENSHCOG00000005105) #22	ENSHCOG00000005125	ENSHCOG00000005134 #15	ENSHCOG00000005141	CNNM4 (ENSHCOG00000005167)	CNNM3 (ENSHCOG00000005178)	PURB (ENSHCOG00000005185)	polm (ENSHCOG00000005191)	ved (ENSHCOG00000005201)	gnsb (ENSHCOG00000005207)	mrps24 (ENSHCOG00000005221)	nudcd3 (ENSHCOG00000005240)	CAMK2B (ENSHCOG00000005398)	ENSHCOG00000005433	ENSHCOG00000005456	ENSHCOG00000005466
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Zig-zag eel	MODERN SPECIES	3	ptpn11a (ENSMAMG00000011232)	ENSMAMG00000027456	pla2g3 (ENSMAMG00000011177)	ENSMAMG00000011140	pitpnb (ENSMAMG00000011115)	ENSMAMG00000011028	ENSMAMG00000010992	tor4aa (ENSMAMG00000010979)	ENSMAMG00000010956	ENSMAMG00000010926	pi4kaa (ENSMAMG00000010823)	ENSMAMG00000010794	ENSMAMG00000010726	ENSMAMG00000010722 #17	ENSMAMG00000010649 #21	ckmt2a (ENSMAMG00000010633) #22	ENSMAMG00000010616	ENSMAMG00000010586 #15	ENSMAMG00000010549	ENSMAMG00000010521	ENSMAMG00000010488	ENSMAMG00000010481	ENSMAMG00000010468	ved (ENSMAMG00000010453)	polm (ENSMAMG00000010408)	gnsb (ENSMAMG00000010347)	mrps24 (ENSMAMG00000010334)	nudcd3 (ENSMAMG00000010324)	ENSMAMG00000008099	ENSMAMG00000007939	ENSMAMG00000007911
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Climbing perch	MODERN SPECIES	3	pitpnb (ENSATEG00000003751)	ENSATEG00000003633	ENSATEG00000003563	tor4aa (ENSATEG00000003557)	ENSATEG00000003509	ENSATEG00000026557	pi4kaa (ENSATEG00000003318)	ENSATEG00000026011	ENSATEG00000027747	ENSATEG00000002181	ENSATEG00000029355	ENSATEG00000002176	ENSATEG00000002142	ENSATEG00000002136 #17	ENSATEG00000002019 #21	ckmt2a (ENSATEG00000001981) #22	ENSATEG00000001946	ENSATEG00000001933 #15	ENSATEG00000001871	ENSATEG00000001836	ENSATEG00000001829	ENSATEG00000001818	ENSATEG00000001810	ved (ENSATEG00000001790)	polm (ENSATEG00000001778)	ENSATEG00000027819	gnsb (ENSATEG00000001626)	mrps24 (ENSATEG00000001761)	nudcd3 (ENSATEG00000028953)	ENSATEG00000000508	ENSATEG00000000473
Siamese fighting fish	MODERN SPECIES	3	tmed2 (ENSBSLG00000012466)	ptpn11a (ENSBSLG00000012018)	ENSBSLG00000011918	pla2g3 (ENSBSLG00000011890)	ENSBSLG00000011457	pitpnb (ENSBSLG00000011385)	NAA25 (ENSBSLG00000010928)	brap (ENSBSLG00000010462)	tor4aa (ENSBSLG00000010451)	zgc:56235 (ENSBSLG00000010344)	SLC25A1 (ENSBSLG00000010106)	MARVELD2 (ENSBSLG00000009559)	oclna (ENSBSLG00000009543)	ENSBSLG00000009539 #17	RASGRF2 (ENSBSLG00000009270) #21	ckmt2a (ENSBSLG00000008866) #22	ENSBSLG00000008859	ENSBSLG00000008843	ENSBSLG00000007941 #15	ENSBSLG00000007162	CNNM4 (ENSBSLG00000006739)	CNNM3 (ENSBSLG00000006460)	il1b (ENSBSLG00000006363)	PURB (ENSBSLG00000006318)	ved (ENSBSLG00000006280)	polm (ENSBSLG00000006157)	mrps24 (ENSBSLG00000006130)	nudcd3 (ENSBSLG00000006128)	CAMK2B (ENSBSLG00000005551)	CALHM5 (ENSBSLG00000005345)	ppp6c (ENSBSLG00000005267)
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428.m.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00390000012355.A.a.a.b #17	ENSGT00730000110989.c.a	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00950000183162.a.b.i.b	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT01030000234539.b.b.a.i	ENSGT00940000165894.a	ENSGT00940000158107.a.a
Turbot	MODERN SPECIES	16	ENSSMAG00000012312	ENSSMAG00000012260	ENSSMAG00000012251	ENSSMAG00000012237	ENSSMAG00000012225	ENSSMAG00000012197	ENSSMAG00000012135	ENSSMAG00000012084	ENSSMAG00000012062	ENSSMAG00000012042	ENSSMAG00000012031	ENSSMAG00000012022	ENSSMAG00000011992	ENSSMAG00000034189 #17	ENSSMAG00000011841 #21	ckmt2a (ENSSMAG00000011784) #22	ENSSMAG00000011772	ENSSMAG00000011693 #15	ENSSMAG00000011637	ENSSMAG00000011618	ENSSMAG00000011581	ENSSMAG00000011557	polm (ENSSMAG00000011509)	gnsb (ENSSMAG00000011471)	mrps24 (ENSSMAG00000030328)	nudcd3 (ENSSMAG00000011438)	ENSSMAG00000011390	ENSSMAG00000011280	ENSSMAG00000011258	TNPO1 (ENSSMAG00000011202)	fcho2 (ENSSMAG00000011163)
Tongue sole	MODERN SPECIES	5	denr (ENSCSEG00000012090)	HIP1R (ENSCSEG00000012059)	RILPL1 (ENSCSEG00000012038)	kmt5aa (ENSCSEG00000012018)	sbno1 (ENSCSEG00000011919)	CDK2AP1 (ENSCSEG00000011903)	MPHOSPH9 (ENSCSEG00000011886)	ENSCSEG00000011879	ENSCSEG00000011807	KIF2A (ENSCSEG00000011790)	ENSCSEG00000011784	ENSCSEG00000011775 #17	oclna (ENSCSEG00000011772)	RASGRF2 (ENSCSEG00000011747) #21	CKMT1A (ENSCSEG00000011736) ##22	ckmt2a (ENSCSEG00000011734) #22	ENSCSEG00000011731	ENSCSEG00000011721 #15	ENSCSEG00000011700	CNNM4 (ENSCSEG00000011693)	ENSCSEG00000011684	ENSCSEG00000011676	PURB (ENSCSEG00000011673)	ENSCSEG00000011660	ENSCSEG00000011639	ENSCSEG00000011631	ENSCSEG00000011625	acads (ENSCSEG00000011604)	crybb1 (ENSCSEG00000011597)	cryba4 (ENSCSEG00000011585)	grk3 (ENSCSEG00000011551)
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Seriola	ANCESTRAL SPECIES	53	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT01060000248544.a.a.b.a.a.f.p	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Yellowtail amberjack	MODERN SPECIES	3031	pla2g3 (ENSSLDG00000011163)	ENSSLDG00000011149	ENSSLDG00000011126	pitpnb (ENSSLDG00000011103)	tnfsf14 (ENSSLDG00000011090)	NAA25 (ENSSLDG00000010960)	brap (ENSSLDG00000010908)	tor4aa (ENSSLDG00000010890)	ENSSLDG00000010871	SLC25A1 (ENSSLDG00000010848)	pi4kaa (ENSSLDG00000010707)	MARVELD2 (ENSSLDG00000010664)	oclna (ENSSLDG00000010640)	ANKRD34B (ENSSLDG00000010628) #17	RASGRF2 (ENSSLDG00000010563) #21	ckmt2a (ENSSLDG00000010522) #22	UBE2L5 (ENSSLDG00000010498)	ENSSLDG00000010400 #15	ENSSLDG00000010231	CNNM4 (ENSSLDG00000010177)	ENSSLDG00000010126
Greater amberjack	MODERN SPECIES	19	pla2g3 (ENSSDUG00000023581)	ENSSDUG00000023583	pitpnb (ENSSDUG00000023586)	tnfsf14 (ENSSDUG00000023587)	NAA25 (ENSSDUG00000023588)	brap (ENSSDUG00000023589)	tor4aa (ENSSDUG00000023590)	zgc:56235 (ENSSDUG00000000067)	SLC25A1 (ENSSDUG00000000166)	ENSSDUG00000000171	pi4kaa (ENSSDUG00000000214)	MARVELD2 (ENSSDUG00000000386)	oclna (ENSSDUG00000000419)	ANKRD34B (ENSSDUG00000000432) #17	RASGRF2 (ENSSDUG00000000440) #21	ckmt2a (ENSSDUG00000000484) #22	UBE2L5 (ENSSDUG00000000523)	ENSSDUG00000000554 #15	ENSSDUG00000000663	ENSSDUG00000000691	CNNM4 (ENSSDUG00000000805)	ENSSDUG00000000857
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00390000012630.B	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Tetraodontidae	ANCESTRAL SPECIES	19	ENSGT00550000074969	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d	ENSGT01030000234539.b.b.a.i
Fugu	MODERN SPECIES	18	ENSTRUG00000018535	pla2g3 (ENSTRUG00000018542)	ENSTRUG00000026481	pitpnb (ENSTRUG00000018546)	ENSTRUG00000030820	brap (ENSTRUG00000018551)	tor4aa (ENSTRUG00000029108)	zgc:56235 (ENSTRUG00000018554)	SLC25A1 (ENSTRUG00000018555)	ENSTRUG00000024634	pi4kaa (ENSTRUG00000026573)	MARVELD2 (ENSTRUG00000018563)	oclna (ENSTRUG00000018564)	ANKRD34B (ENSTRUG00000022958) #17	RASGRF2 (ENSTRUG00000018567) #21	ckmt2a (ENSTRUG00000018572) #22	ENSTRUG00000020733	ENSTRUG00000020228 #15	ENSTRUG00000018575	CNNM4 (ENSTRUG00000018576)	ENSTRUG00000018580	PURB (ENSTRUG00000018581)	ved (ENSTRUG00000018582)	polm (ENSTRUG00000018583)	gnsb (ENSTRUG00000018586)	mrps24 (ENSTRUG00000026742)	nudcd3 (ENSTRUG00000018589)	CAMK2B (ENSTRUG00000018591)	OGDH (ENSTRUG00000018593)	ENSTRUG00000018594	ZMIZ2 (ENSTRUG00000018595)
Tetraodon	MODERN SPECIES	19	ENSTNIG00000011225	ENSTNIG00000013522	ENSTNIG00000013523	pitpnb (ENSTNIG00000013524)	NAA25 (ENSTNIG00000013525)	brap (ENSTNIG00000013526)	tor4aa (ENSTNIG00000013527)	zgc:56235 (ENSTNIG00000013528)	cluap1 (ENSTNIG00000013529)	SLC25A1 (ENSTNIG00000013530)	pi4kaa (ENSTNIG00000013531)	MARVELD2 (ENSTNIG00000013532)	oclna (ENSTNIG00000013533)	ENSTNIG00000013534 #17	RASGRF2 (ENSTNIG00000013535) #21	ckmt2a (ENSTNIG00000013536) #22	ENSTNIG00000013538	ENSTNIG00000013539	ENSTNIG00000000143	galnt11 (ENSTNIG00000013540)	ENSTNIG00000013541	xylb (ENSTNIG00000013542)	ENSTNIG00000013543	crygn2 (ENSTNIG00000013544)	sugct (ENSTNIG00000013545)	inhbaa (ENSTNIG00000013546)	eci2 (ENSTNIG00000013547)	ENSTNIG00000013548	ENSTNIG00000013549 #15	ENSTNIG00000013550	ENSTNIG00000013552
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Ballan wrasse	MODERN SPECIES	674											HIC2 (ENSLBEG00000010933)	MARVELD2 (ENSLBEG00000010830)	ANKRD34B (ENSLBEG00000010796) #17	oclna (ENSLBEG00000010763)	RASGRF2 (ENSLBEG00000010514) #21	ckmt2a (ENSLBEG00000010417) #22	ENSLBEG00000010395	ENSLBEG00000010269 #15	ENSLBEG00000010236	ENSLBEG00000010198	CNNM4 (ENSLBEG00000010151)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Channel bull blenny	MODERN SPECIES	3	ptpn11a (ENSCGOG00000024247)	ENSCGOG00000024217	pla2g3 (ENSCGOG00000024208)	ENSCGOG00000024198	pitpnb (ENSCGOG00000024192)	NAA25 (ENSCGOG00000024082)	brap (ENSCGOG00000023993)	tor4aa (ENSCGOG00000023989)	zgc:56235 (ENSCGOG00000023914)	SLC25A1 (ENSCGOG00000023870)	pi4kaa (ENSCGOG00000023836)	MARVELD2 (ENSCGOG00000023830)	ANKRD34B (ENSCGOG00000023828) #17	oclna (ENSCGOG00000023826)	RASGRF2 (ENSCGOG00000023595) #21	ckmt2a (ENSCGOG00000023499) #22	ENSCGOG00000023484	ENSCGOG00000023404 #15	ENSCGOG00000023379	CNNM4 (ENSCGOG00000023377)	purba (ENSCGOG00000023376)	CNNM3 (ENSCGOG00000023366)	ved (ENSCGOG00000023364)	polm (ENSCGOG00000023361)	gnsb (ENSCGOG00000023179)	mrps24 (ENSCGOG00000023159)	nudcd3 (ENSCGOG00000023157)	CAMK2B (ENSCGOG00000018550)	ENSCGOG00000015384	ENSCGOG00000015293	ZMIZ2 (ENSCGOG00000015135)
Pike perch	MODERN SPECIES	165	ENSSLUG00000016891	pla2g3 (ENSSLUG00000016878)	ENSSLUG00000016625	pitpnb (ENSSLUG00000016411)	NAA25 (ENSSLUG00000016374)	brap (ENSSLUG00000016051)	tor4aa (ENSSLUG00000016005)	ENSSLUG00000015894	SLC25A1 (ENSSLUG00000015243)	pi4kaa (ENSSLUG00000014652)	MARVELD2 (ENSSLUG00000014562)	oclna (ENSSLUG00000014548)	ANKRD34B (ENSSLUG00000014541) #17	ENSSLUG00000014535	RASGRF2 (ENSSLUG00000012688) #21	ckmt2a (ENSSLUG00000011377) #22	ENSSLUG00000011330	ENSSLUG00000011324 #15	ENSSLUG00000011322	ENSSLUG00000011317
Cottioidei	ANCESTRAL SPECIES	33	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350
Stickleback	MODERN SPECIES	185					ENSGACG00000000321	NAA25 (ENSGACG00000000334)	brap (ENSGACG00000000338)	tor4aa (ENSGACG00000000341)	zgc:56235 (ENSGACG00000000342)	SLC25A1 (ENSGACG00000000351)	pi4kaa (ENSGACG00000000354)	ENSGACG00000000361	oclna (ENSGACG00000000363)	ENSGACG00000000365 #17	RASGRF2 (ENSGACG00000000366) #21	ckmt2a (ENSGACG00000000372) #22	ENSGACG00000000392	ENSGACG00000000407
Lumpfish	MODERN SPECIES	3	scarb1 (ENSCLMG00005019489)	ENSCLMG00005019244	ash2l (ENSCLMG00005019239)	gnsb (ENSCLMG00005019094)	mrps24 (ENSCLMG00005019091)	nudcd3 (ENSCLMG00005019088)	CAMK2B (ENSCLMG00005018585)	ENSCLMG00005018202	ENSCLMG00005018187	ENSCLMG00005018185	ENSCLMG00005018183	DUSP26 (ENSCLMG00005018179)	ddx56 (ENSCLMG00005018178)	aebp1a (ENSCLMG00005018171)	pnx (ENSCLMG00005018165)	CKMT2 (ENSCLMG00005018159) #22	ENSCLMG00005018158	ENSCLMG00005017995 #15	ENSCLMG00005017993	CNNM4 (ENSCLMG00005017964)	CNNM3 (ENSCLMG00005017863)	ENSCLMG00005017862	PURB (ENSCLMG00005017861)	ved (ENSCLMG00005017860)	RASGRF2 (ENSCLMG00005017859) #21	ANKRD34B (ENSCLMG00005017858) #17	oclna (ENSCLMG00005017857)	MARVELD2 (ENSCLMG00005017856)	pi4kaa (ENSCLMG00005017621)	ENSCLMG00005017620	SLC25A1 (ENSCLMG00005017619)
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00390000009837	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a	ENSGT00390000003652.d
European seabass	MODERN SPECIES	9	ptpn11a (ENSDLAG00005010624)	ENSDLAG00005010369	pla2g3 (ENSDLAG00005010347)	ENSDLAG00005010195	pitpnb (ENSDLAG00005026952)	ENSDLAG00005010117	ENSDLAG00005009844	tor4aa (ENSDLAG00005031169)	ENSDLAG00005033209	ENSDLAG00005028190	pi4kaa (ENSDLAG00005009084)	ENSDLAG00005009060	ENSDLAG00005009032	ENSDLAG00005034049 #17	ENSDLAG00005006442	ckmt2a (ENSDLAG00005006396) #22	ENSDLAG00005003567	ENSDLAG00005006537 #21	ENSDLAG00005005477	ENSDLAG00005006044 #15	ENSDLAG00005005330	ENSDLAG00005031724	il1b (ENSDLAG00005005313)	ENSDLAG00005005301	ved (ENSDLAG00005002320)	polm (ENSDLAG00005005235)	gnsb (ENSDLAG00005005068)	mrps24 (ENSDLAG00005005044)	nudcd3 (ENSDLAG00005005035)	ENSDLAG00005028409	OGDH (ENSDLAG00005005014)
Large yellow croaker	MODERN SPECIES	4	ENSLCRG00005022598	pla2g3 (ENSLCRG00005022602)	ENSLCRG00005022607	pitpnb (ENSLCRG00005022620)	NAA25 (ENSLCRG00005022647)	brap (ENSLCRG00005022652)	tor4aa (ENSLCRG00005000164)	zgc:56235 (ENSLCRG00005000246)	HIC2 (ENSLCRG00005000462)	pi4kaa (ENSLCRG00005000472)	SLC25A1 (ENSLCRG00005001379)	MARVELD2 (ENSLCRG00005002094)	oclna (ENSLCRG00005002103)	ANKRD34B (ENSLCRG00005002108) #17	RASGRF2 (ENSLCRG00005002162) #21	ckmt2a (ENSLCRG00005006852) #22	ENSLCRG00005007068	ENSLCRG00005007072 #15	ENSLCRG00005007382	CNNM4 (ENSLCRG00005007667)	CNNM3 (ENSLCRG00005007677)	ENSLCRG00005007680	PURB (ENSLCRG00005007682)	ved (ENSLCRG00005007685)	polm (ENSLCRG00005007689)	mzt2b (ENSLCRG00005007793)	lhx5 (ENSLCRG00005007797)	GCNT4 (ENSLCRG00005007802)	hmgcrb (ENSLCRG00005007812)	CERT1 (ENSLCRG00005008123)	SV2C (ENSLCRG00005010695)
Gilthead seabream	MODERN SPECIES	3	ENSSAUG00010006488	pla2g3 (ENSSAUG00010006480)	ENSSAUG00010006478	ENSSAUG00010006477	ENSSAUG00010006450	NAA25 (ENSSAUG00010003489)	brap (ENSSAUG00010003407)	tor4aa (ENSSAUG00010003396)	zgc:56235 (ENSSAUG00010002564)	SLC25A1 (ENSSAUG00010002365)	pi4kaa (ENSSAUG00010002122)	MARVELD2 (ENSSAUG00010002078)	oclna (ENSSAUG00010002073)	ENSSAUG00010002071 #17	RASGRF2 (ENSSAUG00010001968) #21	ckmt2a (ENSSAUG00010001906) #22	UBE2L5 (ENSSAUG00010001897)	ENSSAUG00010001761 #15	ENSSAUG00010001716	CNNM4 (ENSSAUG00010001710)	CNNM3 (ENSSAUG00010001644)	ENSSAUG00010001602	PURB (ENSSAUG00010001595)	ved (ENSSAUG00010001588)	ved (ENSSAUG00010001581)	polm (ENSSAUG00010001522)	gnsb (ENSSAUG00010025961)	mrps24 (ENSSAUG00010025952)	nudcd3 (ENSSAUG00010025950)	CAMK2B (ENSSAUG00010025489)	ENSSAUG00010025434
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000165322	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Indian medaka	MODERN SPECIES	30	tmed2 (ENSOMEG00000023436)	ENSOMEG00000023421	NAA25 (ENSOMEG00000023413)	brap (ENSOMEG00000023384)	ENSOMEG00000023373	tor4aa (ENSOMEG00000023366)	VDAC3 (ENSOMEG00000023354)	SLC25A1 (ENSOMEG00000023335)	ENSOMEG00000023317	ENSOMEG00000023313	ENSOMEG00000023307	MARVELD2 (ENSOMEG00000000815)	oclna (ENSOMEG00000023280)	ENSOMEG00000000814 #17	RASGRF2 (ENSOMEG00000023256) #21	ckmt2a (ENSOMEG00000023240) #22	ENSOMEG00000023229	UBE2L5 (ENSOMEG00000023226)	ENSOMEG00000023202 #15	ENSOMEG00000023165	CNNM4 (ENSOMEG00000023126)	ENSOMEG00000023108	CNNM3 (ENSOMEG00000023101)	ENSOMEG00000023083	PURB (ENSOMEG00000023076)	ved (ENSOMEG00000023061)	polm (ENSOMEG00000000622)	gnsb (ENSOMEG00000023040)	mrps24 (ENSOMEG00000023018)	nudcd3 (ENSOMEG00000023012)	CAMK2B (ENSOMEG00000022992)
Javanese ricefish	MODERN SPECIES	3	pla2g3 (ENSOJAG00000005515)	ptpn11a (ENSOJAG00000004911)	tmed2 (ENSOJAG00000004834)	ENSOJAG00000004792	brap (ENSOJAG00000004054)	tor4aa (ENSOJAG00000004020)	zgc:56235 (ENSOJAG00000003581)	SLC25A1 (ENSOJAG00000003504)	MARVELD2 (ENSOJAG00000002502)	ENSOJAG00000002491	oclna (ENSOJAG00000002475)	ENSOJAG00000002454 #17	ENSOJAG00000002450 #21	ENSOJAG00000002439 #17	RASGRF2 (ENSOJAG00000002297) #21	ckmt2a (ENSOJAG00000002248) #22	UBE2L5 (ENSOJAG00000002232)	ENSOJAG00000001854	CNNM4 (ENSOJAG00000001764)	NEU3 (ENSOJAG00000001701)	ENSOJAG00000001664	ENSOJAG00000018697	PURB (ENSOJAG00000018690)	ved (ENSOJAG00000018684)	polm (ENSOJAG00000018627)	gnsb (ENSOJAG00000018474)	mrps24 (ENSOJAG00000018463)	nudcd3 (ENSOJAG00000018366)	CAMK2B (ENSOJAG00000016481)	HAPLN1 (ENSOJAG00000016279) #37	cetn3 (ENSOJAG00000016238)
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000157468.b	ENSGT00940000153876.B	ENSGT00940000155143	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000180245	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Chinese medaka	MODERN SPECIES	1218	HAPLN1 (ENSOSIG00000016179) #37	ENSOSIG00000016181	CAMK2B (ENSOSIG00000016468)	nudcd3 (ENSOSIG00000022147)	mrps24 (ENSOSIG00000022149)	ENSOSIG00000022151	CNNM3 (ENSOSIG00000022152)	NEU3 (ENSOSIG00000022153)	ENSOSIG00000022155	tor4aa (ENSOSIG00000022157)	ENSOSIG00000022160	SLC25A1 (ENSOSIG00000022165)	MARVELD2 (ENSOSIG00000022193)	ANKRD34B (ENSOSIG00000022197) #17	RASGRF2 (ENSOSIG00000022236) #21	ckmt2a (ENSOSIG00000022294) #22	UBE2L5 (ENSOSIG00000022304)
Japanese Medaka HdrR	MODERN SPECIES	3	ptpn11a (ENSORLG00000000470)	tmed2 (ENSORLG00000025915)	PITPNB (ENSORLG00000000499)	NAA25 (ENSORLG00000024199)	brap (ENSORLG00000000523)	tor4aa (ENSORLG00000000532)	ENSORLG00000000548	SLC25A1 (ENSORLG00000000564)	ENSORLG00000027140	ENSORLG00000025597	ENSORLG00000023950	ENSORLG00000000652	oclna (ENSORLG00000000668)	ENSORLG00000000675 #17	ENSORLG00000000753 #21	ckmt2a (ENSORLG00000000769) #22	ENSORLG00000026985	UBE2L5 (ENSORLG00000000771)	ENSORLG00000000778 #15	ENSORLG00000000795	ENSORLG00000000803	neu3b (ENSORLG00000000809)	CNNM3 (ENSORLG00000000826)	ENSORLG00000024863	PURB (ENSORLG00000000837)	ved (ENSORLG00000023823)	polm (ENSORLG00000000840)	gnsb (ENSORLG00000000857)	mrps24 (ENSORLG00000000867)	nudcd3 (ENSORLG00000000883)	ENSORLG00000000900
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Aplocheiloidei	ANCESTRAL SPECIES	73											ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Mangrove rivulus	MODERN SPECIES	171															RASGRF2 (ENSKMAG00000015947) #21	ckmt2a (ENSKMAG00000015989) #22	ENSKMAG00000016019	ENSKMAG00000016036 #15	ENSKMAG00000016058	CNNM4 (ENSKMAG00000016094)	NEU3 (ENSKMAG00000016130)	ENSKMAG00000016143	ENSKMAG00000016156	PURB (ENSKMAG00000016170)	ved (ENSKMAG00000016182)	polm (ENSKMAG00000016194)	gnsb (ENSKMAG00000016225)	mrps24 (ENSKMAG00000016276)	nudcd3 (ENSKMAG00000016295)	CAMK2B (ENSKMAG00000016336)	OGDH (ENSKMAG00000016415)
Turquoise killifish	MODERN SPECIES	1611	SLC4A5 (ENSNFUG00015004910)	tacr1b (ENSNFUG00015007292)	ENSNFUG00015007297	ENSNFUG00015007303	SCARB1 (ENSNFUG00015007316)	ENSNFUG00015007331	grk5 (ENSNFUG00015007368)	ash2l (ENSNFUG00015007737)	pnx (ENSNFUG00015008020)	aebp1a (ENSNFUG00015008027)	MARVELD2 (ENSNFUG00015008100)	oclna (ENSNFUG00015008106)	ENSNFUG00015008111 #17	ENSNFUG00015008116	RASGRF2 (ENSNFUG00015008227) #21	CKMT2 (ENSNFUG00015010050) #22	UBE2L5 (ENSNFUG00015010265)	ENSNFUG00015010340	ENSNFUG00015010366 #15	ENSNFUG00015010493	CNNM4 (ENSNFUG00015010649)	ENSNFUG00015010886	ENSNFUG00015010889	PURB (ENSNFUG00015010894)	ved (ENSNFUG00015010913)	polm (ENSNFUG00015011030)	gnsb (ENSNFUG00015011217)	MRPS24 (ENSNFUG00015012040)	NUDCD3 (ENSNFUG00015012047)	ENSNFUG00015012297	ENSNFUG00015017190
Cyprinodontoidei	ANCESTRAL SPECIES	36															ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
NAME_4	ANCESTRAL SPECIES	238															ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000156481.b	ENSGT00940000158973.a.b
Mummichog	MODERN SPECIES	369															RASGRF2 (ENSFHEG00000002304) #21	ckmt2a (ENSFHEG00000002239) #22	UBE2L5 (ENSFHEG00000002223)	ENSFHEG00000002214 #15	ENSFHEG00000002206	CNNM4 (ENSFHEG00000002194)	ENSFHEG00000002185	ENSFHEG00000002179	PURB (ENSFHEG00000002178)	ved (ENSFHEG00000002176)	ENSFHEG00000000070	gnsb (ENSFHEG00000000069)	mrps24 (ENSFHEG00000002153)	nudcd3 (ENSFHEG00000002147)	ENSFHEG00000023247	ENSFHEG00000023245	ENSFHEG00000023242
Sheepshead minnow	MODERN SPECIES	1246												ENSCVAG00000014728	ENSCVAG00000014762	ENSCVAG00000014771	RASGRF2 (ENSCVAG00000014837) #21	ckmt2a (ENSCVAG00000014862) #22	ENSCVAG00000014876
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000157468.b.f	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.a.g	ENSGT00390000012355.A.a.a.b #17	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.c.a	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.a.g	ENSGT00390000012355.A.a.a.b #17	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00550000074798.a.a	ENSGT00550000074856.c.a	ENSGT00950000182944.A.b.c.f.a.c.a	ENSGT00950000182944.A.b.c.f.a.d	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
NAME_6	ANCESTRAL SPECIES	108	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.a.g	ENSGT00390000012355.A.a.a.b #17	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00550000074798.a.a	ENSGT00550000074856.c.a	ENSGT00950000183116.b.a.a.b.a.b.n.a.a.b	ENSGT00950000182944.A.b.c.e.b	ENSGT00950000182944.A.b.c.f.a.c.a	ENSGT00950000182944.A.b.c.f.a.d	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e.a.b	ENSGT00950000182944.A.b.c.e.a.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Amazon molly	MODERN SPECIES	541															RASGRF2 (ENSPFOG00000023910) #21	ckmt2a (ENSPFOG00000018900) #22	UBE2L5 (ENSPFOG00000018894)	ENSPFOG00000024166 #15	ENSPFOG00000018869	CNNM4 (ENSPFOG00000018852)	ENSPFOG00000018848	ENSPFOG00000018845	ENSPFOG00000018829	ENSPFOG00000018826	PURB (ENSPFOG00000018825)	ved (ENSPFOG00000024366)	polm (ENSPFOG00000018795)	gnsb (ENSPFOG00000018781)	ENSPFOG00000023688	mrps24 (ENSPFOG00000018768)	nudcd3 (ENSPFOG00000018763)
Sailfin molly	MODERN SPECIES	1929															RASGRF2 (ENSPLAG00000011541) #21	ckmt2a (ENSPLAG00000011572) #22	UBE2L5 (ENSPLAG00000011582)	ENSPLAG00000011591 #15	ENSPLAG00000011618	CNNM4 (ENSPLAG00000011761)	ENSPLAG00000011782
Guppy	MODERN SPECIES	442	ENSPREG00000016532	pitpnb (ENSPREG00000016510)	NAA25 (ENSPREG00000016454)	brap (ENSPREG00000016387)	tor4aa (ENSPREG00000016363)	ENSPREG00000016338	ENSPREG00000016333 #17	oclna (ENSPREG00000016314)	MARVELD2 (ENSPREG00000016287)	pi4kaa (ENSPREG00000016173)	SLC25A1 (ENSPREG00000016126)	ENSPREG00000016047	ENSPREG00000016017	ENSPREG00000015971	RASGRF2 (ENSPREG00000015734) #21	ckmt2a (ENSPREG00000015649) #22	UBE2L5 (ENSPREG00000015634)	ENSPREG00000015611 #15	ENSPREG00000015579	CNNM4 (ENSPREG00000015553)	NEU3 (ENSPREG00000015543)	ENSPREG00000015517	ENSPREG00000015501	PURB (ENSPREG00000015491)	ved (ENSPREG00000015482)	polm (ENSPREG00000015468)	gnsb (ENSPREG00000015426)	mrps24 (ENSPREG00000015401)	nudcd3 (ENSPREG00000015381)	CAMK2B (ENSPREG00000015332)	OGDH (ENSPREG00000015295)
Platyfish	MODERN SPECIES	22	tor4aa (ENSXMAG00000004491)	VDAC3 (ENSXMAG00000004494)	ANKRD34B (ENSXMAG00000019595) #17	oclna (ENSXMAG00000004510)	MARVELD2 (ENSXMAG00000004516)	pi4kaa (ENSXMAG00000004531)	ENSXMAG00000028527	SLC25A1 (ENSXMAG00000004598)	NEU3 (ENSXMAG00000024524)	ENSXMAG00000021503	ENSXMAG00000023874	ENSXMAG00000022816	ENSXMAG00000029262	ENSXMAG00000026627	RASGRF2 (ENSXMAG00000001285) #21	ckmt2a (ENSXMAG00000001254) #22	UBE2L5 (ENSXMAG00000001950)	ENSXMAG00000021071 #15	ENSXMAG00000001208	CNNM4 (ENSXMAG00000001195)	NEU3 (ENSXMAG00000001188)	ENSXMAG00000001176	ENSXMAG00000001168	PURB (ENSXMAG00000020285)	ved (ENSXMAG00000001165)	polm (ENSXMAG00000001138)	gnsb (ENSXMAG00000018977)	mrps24 (ENSXMAG00000018973)	nudcd3 (ENSXMAG00000018966)	CAMK2B (ENSXMAG00000025444)	ENSXMAG00000018821
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00940000179402	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490	ENSGT00940000165439	ENSGT00390000011179	ENSGT00940000158444	ENSGT00940000158973.a.b	ENSGT00950000183125.b.a.a.a.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00940000179402	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00950000182944.A.b.c.e	ENSGT00940000161102
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00940000179402	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00940000157468.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00580000081898.b	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00940000153876.B	ENSGT00940000157468.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005008135	pla2g3 (ENSMZEG00005008142)	ENSMZEG00005008178	ENSMZEG00005008330	pitpnb (ENSMZEG00005008349)	NAA25 (ENSMZEG00005008371)	brap (ENSMZEG00005008433)	tor4aa (ENSMZEG00005008467)	VDAC3 (ENSMZEG00005008479)	SLC25A1 (ENSMZEG00005008502)	pi4kaa (ENSMZEG00005008533)	MARVELD2 (ENSMZEG00005008628)	oclna (ENSMZEG00005008660)	ENSMZEG00005008675 #17	RASGRF2 (ENSMZEG00005008692) #21	ckmt2a (ENSMZEG00005008745) #22	UBE2L5 (ENSMZEG00005008762)	ENSMZEG00005008783 #15	ENSMZEG00005008811	CNNM4 (ENSMZEG00005008845)	ENSMZEG00005008874	il1b (ENSMZEG00005008887)	pomk (ENSMZEG00005008896)	ENSMZEG00005008909	nrg1 (ENSMZEG00005008945)	ENSMZEG00005008964	slc38a9 (ENSMZEG00005008976)	PURG (ENSMZEG00005009025)	ENSMZEG00005009041	psmb10 (ENSMZEG00005009082)	ENSMZEG00005009092
Eastern happy	MODERN SPECIES	19	ENSACLG00000024613	ENSACLG00000024599	pla2g3 (ENSACLG00000024563)	ENSACLG00000024361	pitpnb (ENSACLG00000024152)	NAA25 (ENSACLG00000024116)	brap (ENSACLG00000024094)	tor4aa (ENSACLG00000024087)	VDAC3 (ENSACLG00000024053)	SLC25A1 (ENSACLG00000024036)	pi4kaa (ENSACLG00000023874)	MARVELD2 (ENSACLG00000023839)	oclna (ENSACLG00000023765)	ANKRD34B (ENSACLG00000023749) #17	RASGRF2 (ENSACLG00000023710) #21	ckmt2a (ENSACLG00000023593) #22	UBE2L5 (ENSACLG00000023558)	ENSACLG00000023364 #15	ENSACLG00000023341	CNNM4 (ENSACLG00000023318)	ENSACLG00000023280	ENSACLG00000023239	auh (ENSACLG00000023005)	syk (ENSACLG00000022921)	chd1 (ENSACLG00000022847)	ENSACLG00000022844	reep5 (ENSACLG00000022805)	ENSACLG00000022782	macir (ENSACLG00000022775)	lonp2 (ENSACLG00000022712)	il34 (ENSACLG00000022674)
P. nyererei	MODERN SPECIES	297	pla2g3 (ENSPNYG00000003516)	ENSPNYG00000003494	ENSPNYG00000003479	ENSPNYG00000003431	pitpnb (ENSPNYG00000003388)	NAA25 (ENSPNYG00000003300)	brap (ENSPNYG00000003247)	tor4aa (ENSPNYG00000003233)	VDAC3 (ENSPNYG00000003208)	SLC25A1 (ENSPNYG00000003185)	ENSPNYG00000003161	pi4kaa (ENSPNYG00000003009)	MARVELD2 (ENSPNYG00000002962)	oclna (ENSPNYG00000002933)	RASGRF2 (ENSPNYG00000002840) #21	ckmt2a (ENSPNYG00000002808) #22	UBE2L5 (ENSPNYG00000002781)	ENSPNYG00000002757 #15	ENSPNYG00000002697	CNNM4 (ENSPNYG00000002649)	ENSPNYG00000002620
Burton s mouthbrooder	MODERN SPECIES	690				ENSHBUG00000010211	pitpnb (ENSHBUG00000010250)	NAA25 (ENSHBUG00000010313)	brap (ENSHBUG00000010347)	tor4aa (ENSHBUG00000010368)	VDAC3 (ENSHBUG00000010394)	SLC25A1 (ENSHBUG00000010406)	pi4kaa (ENSHBUG00000010555)	MARVELD2 (ENSHBUG00000010592)	oclna (ENSHBUG00000010691)	ANKRD34B (ENSHBUG00000010700) #17	RASGRF2 (ENSHBUG00000010788) #21	ckmt2a (ENSHBUG00000010799) #22	ENSHBUG00000010814	ENSHBUG00000010953 #15	ENSHBUG00000010994	CNNM4 (ENSHBUG00000001069)
Lyretail cichlid	MODERN SPECIES	339	YTHDC2 (ENSNBRG00000000762)	dcp2 (ENSNBRG00000000726)	selenoh (ENSNBRG00000000649)	psmb10 (ENSNBRG00000000626)	ENSNBRG00000000572	PURG (ENSNBRG00000000556)	slc38a9 (ENSNBRG00000000512)	nrg1 (ENSNBRG00000000444)	ENSNBRG00000000401	pomk (ENSNBRG00000000393)	PAM (ENSNBRG00000000386)	MARVELD2 (ENSNBRG00000000366)	oclna (ENSNBRG00000021930)	ANKRD34B (ENSNBRG00000021917) #17	RASGRF2 (ENSNBRG00000021870) #21	ckmt2a (ENSNBRG00000021830) #22	ENSNBRG00000021810	ENSNBRG00000021794	ENSNBRG00000021774 #15	ENSNBRG00000021758	CNNM4 (ENSNBRG00000021733)	ENSNBRG00000021720	ENSNBRG00000021705
Nile tilapia	MODERN SPECIES	19	ENSONIG00000015299	pla2g3 (ENSONIG00000015298)	ENSONIG00000011309	pitpnb (ENSONIG00000028149)	NAA25 (ENSONIG00000011296)	brap (ENSONIG00000011292)	tor4aa (ENSONIG00000011290)	VDAC3 (ENSONIG00000031190)	ENSONIG00000031339	SLC25A1 (ENSONIG00000011285)	pi4kaa (ENSONIG00000011267)	MARVELD2 (ENSONIG00000011263)	oclna (ENSONIG00000011260)	ANKRD34B (ENSONIG00000041287) #17	RASGRF2 (ENSONIG00000011247) #21	ckmt2a (ENSONIG00000011242) #22	ENSONIG00000011239	ENSONIG00000011238 #15	ENSONIG00000011236	CNNM4 (ENSONIG00000011234)	NEU3 (ENSONIG00000011232)	ENSONIG00000011231	il1b (ENSONIG00000011230)	nrg1 (ENSONIG00000011622)	slc38a9 (ENSONIG00000011618)	PURG (ENSONIG00000041233)	ENSONIG00000011605	psmb10 (ENSONIG00000011604)	ENSONIG00000031888	dcp2 (ENSONIG00000033239)	YTHDC2 (ENSONIG00000011601)
Midas cichlid	MODERN SPECIES	1117	ENSACIG00000018737	ENSACIG00000018722	ENSACIG00000018685	pitpnb (ENSACIG00000018659)	NAA25 (ENSACIG00000018617)	ENSACIG00000018612	brap (ENSACIG00000018590)	tor4aa (ENSACIG00000018583)	ENSACIG00000018568	SLC25A1 (ENSACIG00000018499)	pi4kaa (ENSACIG00000018411)	MARVELD2 (ENSACIG00000018392)	oclna (ENSACIG00000018374)	ENSACIG00000018361 #17	RASGRF2 (ENSACIG00000018314) #21	ckmt2a (ENSACIG00000018290) #22	ENSACIG00000018213	ENSACIG00000018169 #15	ENSACIG00000018012
Pomacentridae	ANCESTRAL SPECIES	69	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000180156	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490
Pomacentridae_A	ANCESTRAL SPECIES	46	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00950000183162.a.b.i.b	ENSGT00940000167350	ENSGT00940000158490
Amphiprion	ANCESTRAL SPECIES	41	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00950000182888.b	ENSGT00950000182869.e.b.g.b	ENSGT00550000074856.c.a	ENSGT01030000235069	ENSGT00550000074798.a.a	ENSGT00940000155771.c	ENSGT00730000110989.c.a	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a.g #22	ENSGT00940000153654.ve.b	ENSGT00940000154290.b #15	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00940000170783	ENSGT00940000158490	ENSGT00940000167350	ENSGT00950000183162.a.b.i.b	ENSGT00940000163342.a.b.a.a.p	ENSGT00940000166544.a	ENSGT00940000156102.r #35	ENSGT00940000159267 #37	ENSGT00940000157995	ENSGT00940000157492.a
Orange clownfish	MODERN SPECIES	7	ENSAPEG00000010874	ENSAPEG00000010853	ENSAPEG00000010598	pitpnb (ENSAPEG00000010536)	NAA25 (ENSAPEG00000010428)	brap (ENSAPEG00000010372)	tor4aa (ENSAPEG00000010343)	VDAC3 (ENSAPEG00000009693)	SLC25A1 (ENSAPEG00000009612)	ENSAPEG00000009599	pi4kaa (ENSAPEG00000009510)	MARVELD2 (ENSAPEG00000009496)	oclna (ENSAPEG00000009469)	ANKRD34B (ENSAPEG00000009452) #17	RASGRF2 (ENSAPEG00000009334) #21	ckmt2a (ENSAPEG00000009280) #22	UBE2L5 (ENSAPEG00000009257)	ENSAPEG00000009238 #15	ENSAPEG00000009021	CNNM4 (ENSAPEG00000008963)	ENSAPEG00000008942	ENSAPEG00000008932	polm (ENSAPEG00000008873)	ved (ENSAPEG00000008849)	PURB (ENSAPEG00000008843)	ENSAPEG00000008534	xrcc4 (ENSAPEG00000008514)	ENSAPEG00000008484 #35	ENSAPEG00000008458 #35	HAPLN1 (ENSAPEG00000008402) #37	cetn3 (ENSAPEG00000008380)
Clown anemonefish	MODERN SPECIES	2348						brap (ENSAOCG00000018827)	tor4aa (ENSAOCG00000018759)	zgc:56235 (ENSAOCG00000018738)	SLC25A1 (ENSAOCG00000018666)	pi4kaa (ENSAOCG00000018645)	pi4kaa (ENSAOCG00000018554)	MARVELD2 (ENSAOCG00000018461)	oclna (ENSAOCG00000018439)	ANKRD34B (ENSAOCG00000018414) #17	RASGRF2 (ENSAOCG00000018384) #21	ckmt2a (ENSAOCG00000018295) #22
Spiny chromis	MODERN SPECIES	382								zgc:56235 (ENSAPOG00000014770)	SLC25A1 (ENSAPOG00000014260)	ENSAPOG00000014200	pi4kaa (ENSAPOG00000014178)	MARVELD2 (ENSAPOG00000014100)	ENSAPOG00000014073	ANKRD34B (ENSAPOG00000014037) #17	RASGRF2 (ENSAPOG00000014027) #21	ckmt2a (ENSAPOG00000000964) #22	ENSAPOG00000013875	ENSAPOG00000013851 #15	ENSAPOG00000013841	CNNM4 (ENSAPOG00000013827)	ENSAPOG00000013762	ENSAPOG00000013748	PURB (ENSAPOG00000013695)	ved (ENSAPOG00000013685)	polm (ENSAPOG00000013679)
Bicolor damselfish	MODERN SPECIES	1763																ckmt2a (ENSSPAG00000013037) #22	UBE2L5 (ENSSPAG00000013018)	ENSSPAG00000012954 #15	ENSSPAG00000012934	ENSSPAG00000012899	CNNM4 (ENSSPAG00000012880)	ENSSPAG00000012838	ENSSPAG00000012779
Pinecone sodierfish	MODERN SPECIES	3	ENSMMDG00005013195	pla2g3 (ENSMMDG00005013199)	ENSMMDG00005013226	pitpnb (ENSMMDG00005013256)	NAA25 (ENSMMDG00005013264)	brap (ENSMMDG00005013344)	tor4aa (ENSMMDG00005013432)	zgc:56235 (ENSMMDG00005013449)	SLC25A1 (ENSMMDG00005014532)	pi4kaa (ENSMMDG00005015498)	HIC2 (ENSMMDG00005015642)	MARVELD2 (ENSMMDG00005015647)	oclna (ENSMMDG00005015651)	ANKRD34B (ENSMMDG00005015655) #17	RASGRF2 (ENSMMDG00005015662) #21	ckmt2a (ENSMMDG00005015673) #22	ENSMMDG00005015682	ENSMMDG00005015722 #15	ENSMMDG00005016574	CNNM4 (ENSMMDG00005016585)	ENSMMDG00005016590	ENSMMDG00005016592	PURB (ENSMMDG00005016595)	ved (ENSMMDG00005016599)	polm (ENSMMDG00005016604)	gnsb (ENSMMDG00005016635)	mrps24 (ENSMMDG00005001139)	ENSMMDG00005001143	CAMK2B (ENSMMDG00005001163)	ENSMMDG00005001319	ENSMMDG00005003034
Acanthomorphata	ANCESTRAL SPECIES	13	ENSGT00530000064873.b	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565
Cod	DUPLICATION
Cod	MODERN SPECIES	19	ENSGMOG00000013678	ENSGMOG00000013689	ENSGMOG00000013702	ENSGMOG00000013732	ENSGMOG00000013749	zgc:152830 (ENSGMOG00000013768)	fahd2a (ENSGMOG00000013816)	gpat2 (ENSGMOG00000013847)	adra2b (ENSGMOG00000000928)	dusp2 (ENSGMOG00000000967)	ENSGMOG00000022634	ENSGMOG00000000978	ENSGMOG00000033807	MSH3 (ENSGMOG00000007132) #19	ENSGMOG00000007143 #21	CKMT2 (ENSGMOG00000007164) #22	ENSGMOG00000007175	otpb (ENSGMOG00000025104)	ENSGMOG00000007187	ENSGMOG00000022714	ENSGMOG00000007199	ENSGMOG00000007220	ENSGMOG00000007223	ENSGMOG00000007225	ENSGMOG00000007234	ENSGMOG00000007261	ENSGMOG00000036024	ENSGMOG00000007304	ENSGMOG00000007312	COMMD10 (ENSGMOG00000007318)	ENSGMOG00000007329
Cod	MODERN SPECIES	10	ptpn11a (ENSGMOG00000017724)	ENSGMOG00000017516	ENSGMOG00000017499	pla2g3 (ENSGMOG00000035656)	pitpnb (ENSGMOG00000012346)	ENSGMOG00000012355	ENSGMOG00000012362	tor4aa (ENSGMOG00000012368)	ENSGMOG00000012370	ENSGMOG00000012373	pi4kaa (ENSGMOG00000012377)	ENSGMOG00000012388	ENSGMOG00000012394	ENSGMOG00000034734 #17	ENSGMOG00000012397 #21	ckmt2a (ENSGMOG00000012408) #22	ENSGMOG00000012410	ENSGMOG00000023477 #15	ENSGMOG00000008760	ENSGMOG00000023171	ENSGMOG00000034777	ENSGMOG00000026182	ved (ENSGMOG00000014449)	polm (ENSGMOG00000014523)	gnsb (ENSGMOG00000014554)	mrps24 (ENSGMOG00000014591)	nudcd3 (ENSGMOG00000014607)	ENSGMOG00000029228	ENSGMOG00000019489	ENSGMOG00000025923	ENSGMOG00000019485
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005006628	rassf2a (ENSMMDG00005006626)	SLC23A2 (ENSMMDG00005003804)	KCNIP3 (ENSMMDG00005003716)	pcna (ENSMMDG00005003712)	zgc:152830 (ENSMMDG00005003702)	FAHD2A (ENSMMDG00005003694)	gpat2 (ENSMMDG00005003680)	adra2b (ENSMMDG00005003672)	dusp2 (ENSMMDG00005003670)	MYORG (ENSMMDG00005003664)	ENSMMDG00005003661	msh3 (ENSMMDG00005001314) #19	ENSMMDG00005001137	rasgrf2b (ENSMMDG00005001125) #21	ckmt2a (ENSMMDG00005001115) #22	ENSMMDG00005001112	ENSMMDG00005001106	otpb (ENSMMDG00005001102)	scamp1 (ENSMMDG00005001099)	ENSMMDG00005022335	ENSMMDG00005022334	ENSMMDG00005022308	mrps36 (ENSMMDG00005022303)	pdxp (ENSMMDG00005022302)	ENSMMDG00005022301	spef2 (ENSMMDG00005022298)	lifra (ENSMMDG00005022279)	CEP78 (ENSMMDG00005022273)	cdo1 (ENSMMDG00005022271)	AP3S1 (ENSMMDG00005022269)
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Aplocheiloidei	ANCESTRAL SPECIES	21	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01030000235339	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Mangrove rivulus	MODERN SPECIES	21	SLC23A2 (ENSKMAG00000002958)	KCNIP3 (ENSKMAG00000002912)	pcna (ENSKMAG00000002907)	zgc:152830 (ENSKMAG00000002842)	fahd2a (ENSKMAG00000002803)	gpat2 (ENSKMAG00000002678)	adra2b (ENSKMAG00000002655)	dusp2 (ENSKMAG00000002651)	MYORG (ENSKMAG00000002622)	ENSKMAG00000002604	ENSKMAG00000002595	ENSKMAG00000002587	ENSKMAG00000002564	msh3 (ENSKMAG00000002204) #19	rasgrf2b (ENSKMAG00000002012) #21	ckmt2a (ENSKMAG00000001939) #22	ENSKMAG00000001924	otpb (ENSKMAG00000001897)	scamp1 (ENSKMAG00000001843)	ENSKMAG00000001828	ENSKMAG00000001742	mrps36 (ENSKMAG00000001690)	pdxp (ENSKMAG00000001683)	ENSKMAG00000001637	ENSKMAG00000001568	lifra (ENSKMAG00000001550)	ENSKMAG00000001540	cdo1 (ENSKMAG00000001522)	AP3S1 (ENSKMAG00000001484)	ENSKMAG00000001471	COMMD10 (ENSKMAG00000001440)
Turquoise killifish	MODERN SPECIES	1627	ENSNFUG00015015157	rassf2a (ENSNFUG00015015079)	ENSNFUG00015015066	SLC23A2 (ENSNFUG00015014749)	KCNIP3 (ENSNFUG00015014663)	pcna (ENSNFUG00015014638)	FAHD2A (ENSNFUG00015014502)	gpat2 (ENSNFUG00015014453)	ADRA2B (ENSNFUG00015014444)	DUSP2 (ENSNFUG00015014438)	KIAA1161 (ENSNFUG00015014422)	ENSNFUG00015014407	ENSNFUG00015014390	msh3 (ENSNFUG00015013228) #19	ENSNFUG00015013185 #21	ckmt2a (ENSNFUG00015013170) #22	ENSNFUG00015013160	otpb (ENSNFUG00015013153)	Nfu_g_1_009407 (ENSNFUG00015013128)	ENSNFUG00015013122	ENSNFUG00015012931	MRPS36 (ENSNFUG00015012923)	PDXP (ENSNFUG00015012917)	LIFRA (ENSNFUG00015012860)	ENSNFUG00015012851	CDO1 (ENSNFUG00015012843)	AP3S1 (ENSNFUG00015012824)	COMMD10 (ENSNFUG00015012814)	sema6a (ENSNFUG00015012748)	DMXL1 (ENSNFUG00015012627)	hsd17b4 (ENSNFUG00015012592)
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00730000111210	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565
NAME_4	ANCESTRAL SPECIES	24	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00730000111210	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565
Mummichog	MODERN SPECIES	2272	prnprs3 (ENSFHEG00000021843)	SLC23A2 (ENSFHEG00000021833)	KCNIP3 (ENSFHEG00000021813)	pcna (ENSFHEG00000021804)	mns1 (ENSFHEG00000021777)	zgc:152830 (ENSFHEG00000021752)	FAHD2A (ENSFHEG00000021680)	gpat2 (ENSFHEG00000021629)	adra2b (ENSFHEG00000021618)	dusp2 (ENSFHEG00000021610)	MYORG (ENSFHEG00000021601)	ENSFHEG00000021578	ENSFHEG00000021566	msh3 (ENSFHEG00000021546) #19	rasgrf2b (ENSFHEG00000021480) #21	ckmt2a (ENSFHEG00000021390) #22	ENSFHEG00000021363	otpb (ENSFHEG00000021353)	ENSFHEG00000021333	ENSFHEG00000021313	ENSFHEG00000021297	mrps36 (ENSFHEG00000021291)	pdxp (ENSFHEG00000021262)	spef2 (ENSFHEG00000021227)	ENSFHEG00000000869	ENSFHEG00000020410	cdo1 (ENSFHEG00000000590)	AP3S1 (ENSFHEG00000020380)	COMMD10 (ENSFHEG00000020362)	sema6a (ENSFHEG00000020352)	sema6a (ENSFHEG00000020341)
Sheepshead minnow	MODERN SPECIES	129															rasgrf2b (ENSCVAG00000012271) #21	ckmt2a (ENSCVAG00000012125) #22	ENSCVAG00000012082	otpb (ENSCVAG00000012046)	ENSCVAG00000012021	scamp1 (ENSCVAG00000011999)	ENSCVAG00000011934	ENSCVAG00000000311	ENSCVAG00000011172	mrps36 (ENSCVAG00000011133)	pdxp (ENSCVAG00000011119)	ENSCVAG00000011113	ENSCVAG00000011096	cdo1 (ENSCVAG00000011082)	ENSCVAG00000011064	kirrel1b (ENSCVAG00000011050)	cadm3 (ENSCVAG00000010999)
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00390000004965	ENSGT00730000111210	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949.l #19	ENSGT01100000263860	ENSGT00550000074949.k #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565.h
Poecilia	ANCESTRAL SPECIES	3	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00730000111210	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263860.a.a	ENSGT01100000263860.a.b.a	ENSGT00550000074949.k #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565.h
NAME_6	ANCESTRAL SPECIES	82													ENSGT01100000263860.a.b.a	ENSGT00550000074949.k #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565.h
Amazon molly	MODERN SPECIES	340														msh3 (ENSPFOG00000000563) #19	rasgrf2b (ENSPFOG00000000906) #21	ckmt2a (ENSPFOG00000001185) #22	ENSPFOG00000001274	otpb (ENSPFOG00000001352)	scamp1 (ENSPFOG00000001460)	ENSPFOG00000001608	ENSPFOG00000001689	mrps36 (ENSPFOG00000001860)	pdxp (ENSPFOG00000001900)	ENSPFOG00000001952	ENSPFOG00000002120	ENSPFOG00000002245	cdo1 (ENSPFOG00000002497)	AP3S1 (ENSPFOG00000002499)	COMMD10 (ENSPFOG00000002561)	sema6a (ENSPFOG00000002593)	SEMA6A (ENSPFOG00000002874)
Sailfin molly	MODERN SPECIES	838															rasgrf2b (ENSPLAG00000000620) #21	ckmt2a (ENSPLAG00000016707) #22	ENSPLAG00000016690	otpb (ENSPLAG00000016667)	scamp1 (ENSPLAG00000016646)	ENSPLAG00000016593	ENSPLAG00000016587	ENSPLAG00000016568	mrps36 (ENSPLAG00000016546)	pdxp (ENSPLAG00000016539)	spef2 (ENSPLAG00000016505)
Guppy	MODERN SPECIES	461	KCNIP3 (ENSPREG00000012152)	pcna (ENSPREG00000012184)	mns1 (ENSPREG00000012204)	zgc:152830 (ENSPREG00000012221)	fahd2a (ENSPREG00000012275)	gpat2 (ENSPREG00000012304)	adra2b (ENSPREG00000012347)	dusp2 (ENSPREG00000012357)	MYORG (ENSPREG00000012392)	ENSPREG00000012422	ENSPREG00000012429	ENSPREG00000012444	ENSPREG00000012458	msh3 (ENSPREG00000012499) #19	rasgrf2b (ENSPREG00000012616) #21	ckmt2a (ENSPREG00000012749) #22	ENSPREG00000012790	scamp1 (ENSPREG00000012821)	ENSPREG00000012842	ENSPREG00000012851	ENSPREG00000012871	mrps36 (ENSPREG00000012889)	pdxp (ENSPREG00000012937)	ENSPREG00000012976	ENSPREG00000013094	ENSPREG00000013125	cdo1 (ENSPREG00000013161)	AP3S1 (ENSPREG00000013270)	COMMD10 (ENSPREG00000013739)	sema6a (ENSPREG00000013871)	DMXL1 (ENSPREG00000014068)
Platyfish	MODERN SPECIES	3	EGFLAM (ENSXMAG00000017061)	GDNF (ENSXMAG00000027276)	ndc80 (ENSXMAG00000017031)	nipbla (ENSXMAG00000016926)	slc1a3a (ENSXMAG00000016896)	lmbrd2a (ENSXMAG00000016875)	GOLM1 (ENSXMAG00000016871)	ENSXMAG00000022545	naa35 (ENSXMAG00000016788)	agtpbp1 (ENSXMAG00000016766)	NTRK2 (ENSXMAG00000016744)	msh3 (ENSXMAG00000016720) #19	ENSXMAG00000025083	ENSXMAG00000022534	rasgrf2b (ENSXMAG00000016680) #21	ckmt2a (ENSXMAG00000016636) #22	ENSXMAG00000016619	otpb (ENSXMAG00000016614)	scamp1 (ENSXMAG00000024922)	ENSXMAG00000016575	ENSXMAG00000016568	ENSXMAG00000022438	mrps36 (ENSXMAG00000016548)	pdxp (ENSXMAG00000016546)	ENSXMAG00000016495	ENSXMAG00000016494	ENSXMAG00000016486	cdo1 (ENSXMAG00000029910)	AP3S1 (ENSXMAG00000016466)	COMMD10 (ENSXMAG00000016453)	sema6a (ENSXMAG00000021461)
Oryzias	ANCESTRAL SPECIES	7	ENSGT00530000064873.b.h	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565	ENSGT00390000000096.a
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00530000064873.b.h	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287.c	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565	ENSGT00390000000096.a
Japanese Medaka HdrR	MODERN SPECIES	23	SLC23A2 (ENSORLG00000002889)	KCNIP3 (ENSORLG00000002929)	pcna (ENSORLG00000002937)	zgc:152830 (ENSORLG00000002965)	FAHD2A (ENSORLG00000002982)	gpat2 (ENSORLG00000003003)	adra2b (ENSORLG00000003027)	dusp2 (ENSORLG00000003043)	ENSORLG00000003057	ENSORLG00000027682	ENSORLG00000003060	ENSORLG00000027888	ENSORLG00000027894	msh3 (ENSORLG00000003076) #19	rasgrf2b (ENSORLG00000003190) #21	CKMT2 (ENSORLG00000003211) #22	ENSORLG00000003230	otpb (ENSORLG00000025542)	SCAMP1 (ENSORLG00000003266)	ENSORLG00000003278	ENSORLG00000003310	pdxp (ENSORLG00000024748)	mrps36 (ENSORLG00000028218)	spef2 (ENSORLG00000003349)	lifra (ENSORLG00000003358)	ENSORLG00000003378	cdo1 (ENSORLG00000003390)	AP3S1 (ENSORLG00000003409)	COMMD10 (ENSORLG00000003421)	ENSORLG00000027333	sema6a (ENSORLG00000003447)
Chinese medaka	MODERN SPECIES	581																ckmt2a (ENSOSIG00000022266) #22	ENSOSIG00000022250
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00530000064873.b.h	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565	ENSGT00390000000096.a
Indian medaka	MODERN SPECIES	11	ENSOMEG00000018179	rassf2a (ENSOMEG00000018260)	SLC23A2 (ENSOMEG00000018332)	KCNIP3 (ENSOMEG00000018379)	pcna (ENSOMEG00000018421)	zgc:152830 (ENSOMEG00000018458)	fahd2a (ENSOMEG00000018473)	gpat2 (ENSOMEG00000018563)	adra2b (ENSOMEG00000018593)	dusp2 (ENSOMEG00000018612)	MYORG (ENSOMEG00000018651)	ENSOMEG00000018671	ENSOMEG00000018681	msh3 (ENSOMEG00000018740) #19	rasgrf2b (ENSOMEG00000000805) #21	ckmt2a (ENSOMEG00000018857) #22	ENSOMEG00000018866	otpb (ENSOMEG00000000708)	scamp1 (ENSOMEG00000018965)	ENSOMEG00000018996	ENSOMEG00000019041	mrps36 (ENSOMEG00000019062)	pdxp (ENSOMEG00000019075)	spef2 (ENSOMEG00000019266)	lifra (ENSOMEG00000019414)	ENSOMEG00000019434	cdo1 (ENSOMEG00000019463)	AP3S1 (ENSOMEG00000019507)	COMMD10 (ENSOMEG00000019553)	sema6a (ENSOMEG00000019695)	DMXL1 (ENSOMEG00000019793)
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263927	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263927	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649.c	ENSGT01070000253853.e.a	ENSGT01070000253853.e.b.a	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443.lb	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649.c	ENSGT01070000253853.e.a	ENSGT01070000253853.e.b.a	ENSGT01070000253853.e.b.b	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443.lb	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649.c.b	ENSGT01070000253853.e.a.c	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443.lb	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
Burton s mouthbrooder	MODERN SPECIES	296							adra2b (ENSHBUG00000001834)	dusp2 (ENSHBUG00000001839)	MYORG (ENSHBUG00000001852)	ENSHBUG00000001862	ENSHBUG00000001868	ENSHBUG00000001875 #19	ENSHBUG00000001881	msh3 (ENSHBUG00000001900) #19	rasgrf2b (ENSHBUG00000001955) #21	ckmt2a (ENSHBUG00000001998) #22	ENSHBUG00000002007	ENSHBUG00000002020	otpb (ENSHBUG00000002023)	scamp1 (ENSHBUG00000002039)	ENSHBUG00000002051	ENSHBUG00000002068	mrps36 (ENSHBUG00000002117)	pdxp (ENSHBUG00000002129)	spef2 (ENSHBUG00000002462)	lifra (ENSHBUG00000002560)	ENSHBUG00000002574	cdo1 (ENSHBUG00000002592)	AP3S1 (ENSHBUG00000002605)	COMMD10 (ENSHBUG00000002629)	sema6a (ENSHBUG00000002682)
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649.c.a	ENSGT01100000263649.c.b	ENSGT01070000253853.e.a.c	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443.lb	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500
P. nyererei	MODERN SPECIES	408												ENSPNYG00000018187	ENSPNYG00000018183 #19	msh3 (ENSPNYG00000018144) #19	rasgrf2b (ENSPNYG00000018007) #21	ckmt2a (ENSPNYG00000017975) #22	ENSPNYG00000017962	ENSPNYG00000017906	otpb (ENSPNYG00000017891)	scamp1 (ENSPNYG00000017880)	ENSPNYG00000017864	ENSPNYG00000017850	ENSPNYG00000017818	mrps36 (ENSPNYG00000017803)	pdxp (ENSPNYG00000017790)	spef2 (ENSPNYG00000017718)	lifra (ENSPNYG00000017699)	ENSPNYG00000017685	cdo1 (ENSPNYG00000017670)	AP3S1 (ENSPNYG00000017651)	COMMD10 (ENSPNYG00000017618)
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649.c.b	ENSGT01070000253853.e.a.c	ENSGT01070000253853.e.b.b	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443.lb	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a	ENSGT00390000001500	ENSGT00940000156565
Zebra mbuna	MODERN SPECIES	1094	KCNIP3 (ENSMZEG00005009469)	pcna (ENSMZEG00005009452)	zgc:152830 (ENSMZEG00005009423)	FAHD2A (ENSMZEG00005009401)	gpat2 (ENSMZEG00005009379)	adra2b (ENSMZEG00005009366)	dusp2 (ENSMZEG00005009360)	MYORG (ENSMZEG00005009348)	ENSMZEG00005009338	ENSMZEG00005009335	ENSMZEG00005009326	ENSMZEG00005009319	ENSMZEG00005009311	msh3 (ENSMZEG00005009271) #19	rasgrf2b (ENSMZEG00005009197) #21	ckmt2a (ENSMZEG00005009166) #22	ENSMZEG00005009151	ENSMZEG00005009140	ENSMZEG00005009127	otpb (ENSMZEG00005009113)	scamp1 (ENSMZEG00005009067)	ENSMZEG00005009044	ENSMZEG00005009004	mrps36 (ENSMZEG00005008995)	pdxp (ENSMZEG00005008982)	ENSMZEG00005008970	lifra (ENSMZEG00005008952)	ENSMZEG00005008936	cdo1 (ENSMZEG00005008922)	AP3S1 (ENSMZEG00005008898)	COMMD10 (ENSMZEG00005008881)
Eastern happy	MODERN SPECIES	3	KCNIP3 (ENSACLG00000011626)	pcna (ENSACLG00000011661)	zgc:152830 (ENSACLG00000011672)	FAHD2A (ENSACLG00000011686)	gpat2 (ENSACLG00000011851)	adra2b (ENSACLG00000011940)	dusp2 (ENSACLG00000011943)	ENSACLG00000011947	MYORG (ENSACLG00000011967)	ENSACLG00000011999	ENSACLG00000012012	ENSACLG00000012050	ENSACLG00000012061	msh3 (ENSACLG00000012067) #19	rasgrf2b (ENSACLG00000012112) #21	ckmt2a (ENSACLG00000012315) #22	ENSACLG00000012399	ENSACLG00000012415	otpb (ENSACLG00000012425)	scamp1 (ENSACLG00000012450)	ENSACLG00000012506	ENSACLG00000012537	mrps36 (ENSACLG00000012574)	pdxp (ENSACLG00000012686)	ENSACLG00000012693	lifra (ENSACLG00000012702)	ENSACLG00000013069	cdo1 (ENSACLG00000013072)	AP3S1 (ENSACLG00000013077)	COMMD10 (ENSACLG00000013081)	sema6a (ENSACLG00000013097)
Lyretail cichlid	MODERN SPECIES	306	rassf2a (ENSNBRG00000018359)	SLC23A2 (ENSNBRG00000018335)	KCNIP3 (ENSNBRG00000018163)	pcna (ENSNBRG00000017935)	zgc:152830 (ENSNBRG00000017857)	FAHD2A (ENSNBRG00000017825)	gpat2 (ENSNBRG00000017707)	adra2b (ENSNBRG00000017684)	dusp2 (ENSNBRG00000017661)	MYORG (ENSNBRG00000017637)	ENSNBRG00000017622	ENSNBRG00000017608	ENSNBRG00000017602	msh3 (ENSNBRG00000017564) #19	rasgrf2b (ENSNBRG00000017537) #21	ckmt2a (ENSNBRG00000017503) #22	ENSNBRG00000017483	ENSNBRG00000017423	otpb (ENSNBRG00000017402)	scamp1 (ENSNBRG00000017376)	ENSNBRG00000017355	ENSNBRG00000017332	mrps36 (ENSNBRG00000017305)	pdxp (ENSNBRG00000017292)	spef2 (ENSNBRG00000017118)	lifra (ENSNBRG00000017052)	ENSNBRG00000017022	cdo1 (ENSNBRG00000017002)	AP3S1 (ENSNBRG00000016685)	COMMD10 (ENSNBRG00000016535)	sema6a (ENSNBRG00000016507)
Nile tilapia	MODERN SPECIES	3	ENSONIG00000030835	KCNIP3 (ENSONIG00000014432)	pcna (ENSONIG00000041691)	zgc:152830 (ENSONIG00000014435)	FAHD2A (ENSONIG00000037466)	gpat2 (ENSONIG00000014440)	adra2b (ENSONIG00000020433)	dusp2 (ENSONIG00000035621)	MYORG (ENSONIG00000014448)	ENSONIG00000038851	ENSONIG00000037845	ENSONIG00000034144	ENSONIG00000031633	msh3 (ENSONIG00000014449) #19	rasgrf2b (ENSONIG00000014451) #21	ckmt2a (ENSONIG00000014455) #22	ENSONIG00000014458	scamp1 (ENSONIG00000014460)	LHFPL2 (ENSONIG00000031614)	ENSONIG00000014465	mrps36 (ENSONIG00000014470)	pdxp (ENSONIG00000037485)	spef2 (ENSONIG00000014471)	lifra (ENSONIG00000014473)	CEP78 (ENSONIG00000014475)	cdo1 (ENSONIG00000014479)	AP3S1 (ENSONIG00000014481)	COMMD10 (ENSONIG00000014485)	sema6a (ENSONIG00000014486)	DMXL1 (ENSONIG00000014493)	hsd17b4 (ENSONIG00000014505)
Midas cichlid	MODERN SPECIES	299	gpat2 (ENSACIG00000005925)	adra2b (ENSACIG00000005900)	dusp2 (ENSACIG00000005880)	MYORG (ENSACIG00000005859)	ENSACIG00000005849	ENSACIG00000005839	ENSACIG00000005823	ENSACIG00000005811	ENSACIG00000005809	ENSACIG00000005799	ENSACIG00000005791	ENSACIG00000005782	ENSACIG00000005775	msh3 (ENSACIG00000005690) #19	rasgrf2b (ENSACIG00000005616) #21	ckmt2a (ENSACIG00000005586) #22	ENSACIG00000005572	otpb (ENSACIG00000005567)	scamp1 (ENSACIG00000005504)	ENSACIG00000005496	ENSACIG00000005471	mrps36 (ENSACIG00000005431)	pdxp (ENSACIG00000005411)	ENSACIG00000005389	ENSACIG00000005355	CEP78 (ENSACIG00000005332)	cdo1 (ENSACIG00000005324)	AP3S1 (ENSACIG00000005300)	COMMD10 (ENSACIG00000005259)	sema6a (ENSACIG00000005224)	DMXL1 (ENSACIG00000005116)
Pomacentridae	ANCESTRAL SPECIES		ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Amphiprion	ANCESTRAL SPECIES	20	ENSGT00950000183167.a.b.b.a	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000166311	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Orange clownfish	MODERN SPECIES	19	prnprs3 (ENSAPEG00000017866)	prnprs3 (ENSAPEG00000017876)	ENSAPEG00000017881	SLC23A2 (ENSAPEG00000017907)	KCNIP3 (ENSAPEG00000017984)	pcna (ENSAPEG00000018016)	zgc:152830 (ENSAPEG00000018050)	fahd2a (ENSAPEG00000018120)	gpat2 (ENSAPEG00000018168)	adra2b (ENSAPEG00000018326)	dusp2 (ENSAPEG00000018339)	MYORG (ENSAPEG00000018350)	ENSAPEG00000018369	msh3 (ENSAPEG00000018385) #19	rasgrf2b (ENSAPEG00000018407) #21	ckmt2a (ENSAPEG00000018475) #22	ENSAPEG00000018504	ENSAPEG00000018513	otpb (ENSAPEG00000018531)	ENSAPEG00000018539	scamp1 (ENSAPEG00000018554)	ENSAPEG00000018591	ENSAPEG00000018648	ENSAPEG00000019219	ENSAPEG00000019395	mrps36 (ENSAPEG00000019416)	pdxp (ENSAPEG00000019422)	ENSAPEG00000019432	spef2 (ENSAPEG00000019443)	lifra (ENSAPEG00000019494)	ENSAPEG00000019512
Clown anemonefish	MODERN SPECIES	3622						zgc:152830 (ENSAOCG00000002732)	fahd2a (ENSAOCG00000017570)	gpat2 (ENSAOCG00000017534)	adra2b (ENSAOCG00000017504)	dusp2 (ENSAOCG00000017497)	ENSAOCG00000017484	MYORG (ENSAOCG00000017467)	ENSAOCG00000017432	msh3 (ENSAOCG00000017411) #19	rasgrf2b (ENSAOCG00000001212) #21	ckmt2a (ENSAOCG00000017273) #22	ENSAOCG00000017236	ENSAOCG00000017223	otpb (ENSAOCG00000017211)	scamp1 (ENSAOCG00000017187)	ENSAOCG00000017155	ENSAOCG00000017128	mrps36 (ENSAOCG00000017088)	pdxp (ENSAOCG00000001175)	ENSAOCG00000001172	spef2 (ENSAOCG00000017034)	lifra (ENSAOCG00000001168)	ENSAOCG00000016895	cdo1 (ENSAOCG00000016872)	AP3S1 (ENSAOCG00000016832)	COMMD10 (ENSAOCG00000016777)
Spiny chromis	MODERN SPECIES	129													ENSAPOG00000002848	msh3 (ENSAPOG00000002868) #19	rasgrf2b (ENSAPOG00000002966) #21	ckmt2a (ENSAPOG00000003007) #22	ENSAPOG00000003022	ENSAPOG00000003053	otpb (ENSAPOG00000003078)	scamp1 (ENSAPOG00000003118)	ENSAPOG00000003137	ENSAPOG00000003169	ENSAPOG00000003203	mrps36 (ENSAPOG00000003231)	pdxp (ENSAPOG00000003239)	ENSAPOG00000003256	spef2 (ENSAPOG00000003339)	lifra (ENSAPOG00000003373)	ENSAPOG00000003383	cdo1 (ENSAPOG00000003408)	AP3S1 (ENSAPOG00000003452)
Bicolor damselfish	MODERN SPECIES	2378																ckmt2a (ENSSPAG00000021268) #22	ENSSPAG00000021109	otpb (ENSSPAG00000021082)
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01060000249528	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Carangaria	ANCESTRAL SPECIES	9	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01090000260308	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01090000260308	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a.jc	ENSGT00390000001500
Turbot	MODERN SPECIES	21	SLC23A2 (ENSSMAG00000005845)	ENSSMAG00000027930	ENSSMAG00000021477	ENSSMAG00000037578	zgc:152830 (ENSSMAG00000005750)	FAHD2A (ENSSMAG00000005662)	gpat2 (ENSSMAG00000005588)	adra2b (ENSSMAG00000005579)	dusp2 (ENSSMAG00000005569)	ENSSMAG00000032881	ENSSMAG00000005550	ENSSMAG00000005535	ENSSMAG00000030909	msh3 (ENSSMAG00000005517) #19	rasgrf2b (ENSSMAG00000005481) #21	CKMT2 (ENSSMAG00000005443) #22	ENSSMAG00000031758	ENSSMAG00000026806	otpb (ENSSMAG00000005414)	ENSSMAG00000005357	ENSSMAG00000005329	ENSSMAG00000005258	ENSSMAG00000005249	ENSSMAG00000025714	ENSSMAG00000005225	ENSSMAG00000005190	ENSSMAG00000005143	ENSSMAG00000005084	ENSSMAG00000005068	ENSSMAG00000005025	COMMD10 (ENSSMAG00000005004)
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01090000260308.b.b	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Seriola	ANCESTRAL SPECIES	72	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01090000260308.b.b.a	ENSGT01060000249528	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00940000153771.B	ENSGT01030000234564.a.a.b.b
Greater amberjack	MODERN SPECIES	215	rassf2a (ENSSDUG00000003008)	SLC23A2 (ENSSDUG00000003043)	KCNIP3 (ENSSDUG00000003106)	pcna (ENSSDUG00000003125)	zgc:152830 (ENSSDUG00000003162)	FAHD2A (ENSSDUG00000003227)	gpat2 (ENSSDUG00000003258)	adra2b (ENSSDUG00000003296)	dusp2 (ENSSDUG00000003321)	MYORG (ENSSDUG00000003331)	msh3 (ENSSDUG00000003357) #19	ENSSDUG00000003421	ENSSDUG00000003426	ENSSDUG00000003435	rasgrf2b (ENSSDUG00000003447) #21	CKMT2 (ENSSDUG00000003516) #22	ENSSDUG00000003544	ENSSDUG00000003558	otpb (ENSSDUG00000003569)	scamp1 (ENSSDUG00000003589)	ENSSDUG00000003615	ENSSDUG00000003662	ENSSDUG00000004062	mrps36 (ENSSDUG00000004088)	pdxp (ENSSDUG00000004096)	spef2 (ENSSDUG00000004108)	lifra (ENSSDUG00000004220)	coq2 (ENSSDUG00000004275)	mboat4 (ENSSDUG00000004299)	ENSSDUG00000004326
Yellowtail amberjack	MODERN SPECIES	2450																ckmt2a (ENSSLDG00000023893) #22	ENSSLDG00000023884	ENSSLDG00000023879	otpb (ENSSLDG00000023870)	scamp1 (ENSSLDG00000023857)	ENSSLDG00000023851	ENSSLDG00000023770	ENSSLDG00000023738	mrps36 (ENSSLDG00000023729)	pdxp (ENSSLDG00000023727)	ENSSLDG00000023717	ENSSLDG00000023714	spef2 (ENSSLDG00000023671)	lifra (ENSSLDG00000023643)	coq2 (ENSSLDG00000023632)	mboat4 (ENSSLDG00000023597)
Barramundi perch	MODERN SPECIES	9	adra2b (ENSLCAG00010003876)	dusp2 (ENSLCAG00010003884)	MYORG (ENSLCAG00010003890)	ENSLCAG00010003891	ENSLCAG00010003894	ENSLCAG00010003896	ENSLCAG00010003898	ENSLCAG00010003900	ENSLCAG00010003903	ENSLCAG00010003905	ENSLCAG00010003908	ENSLCAG00010003911	ENSLCAG00010003914	msh3 (ENSLCAG00010003952) #19	RASGRF2 (ENSLCAG00010004176) #21	CKMT2 (ENSLCAG00010004227) #22	ENSLCAG00010004249	ENSLCAG00010004250	otpb (ENSLCAG00010004253)	scamp1 (ENSLCAG00010004260)	ENSLCAG00010004265	ENSLCAG00010004267	ENSLCAG00010004279	ENSLCAG00010004323	pdxp (ENSLCAG00010004328)	ENSLCAG00010004333	spef2 (ENSLCAG00010004339)	lifra (ENSLCAG00010004350)	ENSLCAG00010004375	cdo1 (ENSLCAG00010004401)	AP3S1 (ENSLCAG00010004424)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01060000249528	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a.jc	ENSGT00390000001500	ENSGT00940000156565
Zig-zag eel	MODERN SPECIES	23	ENSMAMG00000014895	ENSMAMG00000014947	ENSMAMG00000014987	zgc:152830 (ENSMAMG00000015010)	FAHD2A (ENSMAMG00000015071)	gpat2 (ENSMAMG00000015107)	adra2b (ENSMAMG00000015149)	dusp2 (ENSMAMG00000015164)	ENSMAMG00000015171	ENSMAMG00000015208	ENSMAMG00000028188	ENSMAMG00000025996	ENSMAMG00000025066	MSH3 (ENSMAMG00000015232) #19	ENSMAMG00000015244 #21	CKMT2 (ENSMAMG00000015297) #22	ENSMAMG00000015338	ENSMAMG00000015356	otpb (ENSMAMG00000015369)	ENSMAMG00000015385	ENSMAMG00000015438	ENSMAMG00000015452	ENSMAMG00000015489	ENSMAMG00000028538	ENSMAMG00000015598	ENSMAMG00000015723	ENSMAMG00000015769	ppil2 (ENSMAMG00000015787)	ENSMAMG00000015800	mapk1 (ENSMAMG00000015823)	ENSMAMG00000015867
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01060000249528	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a.jc	ENSGT00390000001500	ENSGT00940000156565
Climbing perch	MODERN SPECIES	22	ENSATEG00000026235	SLC23A2 (ENSATEG00000020072)	ENSATEG00000020041	ENSATEG00000019990	zgc:152830 (ENSATEG00000019946)	FAHD2A (ENSATEG00000019916)	gpat2 (ENSATEG00000019786)	adra2b (ENSATEG00000019770)	dusp2 (ENSATEG00000026195)	ENSATEG00000027410	ENSATEG00000019724	ENSATEG00000019709	ENSATEG00000030032	msh3 (ENSATEG00000019638) #19	rasgrf2b (ENSATEG00000019495) #21	CKMT2 (ENSATEG00000019453) #22	ENSATEG00000019446	ENSATEG00000019435	otpb (ENSATEG00000019427)	ENSATEG00000019393	ENSATEG00000019377	ENSATEG00000019354	ENSATEG00000019347	ENSATEG00000019341	ENSATEG00000019290	ENSATEG00000019255	ENSATEG00000019228	ENSATEG00000019206	ENSATEG00000019189	COMMD10 (ENSATEG00000019168)	ENSATEG00000019102
Siamese fighting fish	MODERN SPECIES	20	zgc:152830 (ENSBSLG00000007986)	fahd2a (ENSBSLG00000007967)	gpat2 (ENSBSLG00000007921)	adra2b (ENSBSLG00000007914)	dusp2 (ENSBSLG00000007906)	ENSBSLG00000007882	MYORG (ENSBSLG00000007866)	ENSBSLG00000007849	ENSBSLG00000007835	ENSBSLG00000007821	ENSBSLG00000007786	ENSBSLG00000007762	ENSBSLG00000007563	msh3 (ENSBSLG00000007047) #19	rasgrf2b (ENSBSLG00000006958) #21	CKMT2 (ENSBSLG00000006824) #22	ENSBSLG00000006771	otpb (ENSBSLG00000006744)	scamp1 (ENSBSLG00000006705)	ENSBSLG00000006694	ENSBSLG00000006641	mrps36 (ENSBSLG00000006598)	pdxp (ENSBSLG00000006571)	ENSBSLG00000006545	ENSBSLG00000006531	ENSBSLG00000006439	ENSBSLG00000006397	spef2 (ENSBSLG00000005442)	lifra (ENSBSLG00000005055)	ENSBSLG00000004983	cdo1 (ENSBSLG00000004951)
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01030000235339	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00390000015667	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01030000235339.b	ENSGT01030000235339.a	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000015164	ENSGT00940000155776.b	ENSGT00940000155831.bb	ENSGT00390000004228	ENSGT00940000175206	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b
Tetraodon	MODERN SPECIES	3	CDS1 (ENSTNIG00000015366)	tmem175 (ENSTNIG00000015367)	pcna (ENSTNIG00000015368)	zgc:152830 (ENSTNIG00000015369)	FAHD2A (ENSTNIG00000015370)	gpat2 (ENSTNIG00000000970)	adra2b (ENSTNIG00000015371)	dusp2 (ENSTNIG00000015372)	ENSTNIG00000015373	MYORG (ENSTNIG00000015374)	ENSTNIG00000015375	ENSTNIG00000015376	msh3 (ENSTNIG00000015377) #19	rasgrf2b (ENSTNIG00000015378) #21	ENSTNIG00000015379 #21	ckmt2a (ENSTNIG00000015380) #22	ENSTNIG00000015381	otpb (ENSTNIG00000015382)	scamp1 (ENSTNIG00000015383)	ENSTNIG00000015384	ykt6 (ENSTNIG00000015385)	ENSTNIG00000001808	ENSTNIG00000015386	utp15 (ENSTNIG00000015387)	ENSTNIG00000015388	hic1l (ENSTNIG00000001094)	serpind1 (ENSTNIG00000015390)	pi4kab (ENSTNIG00000015389)	snap29 (ENSTNIG00000015391)	ENSTNIG00000015392	SLC25A1 (ENSTNIG00000015393)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	282	KCNIP3 (ENSLBEG00000015061)	ENSLBEG00000015017	ENSLBEG00000014991	pcna (ENSLBEG00000014768)	zgc:152830 (ENSLBEG00000014655)	FAHD2A (ENSLBEG00000014603)	gpat2 (ENSLBEG00000014519)	adra2b (ENSLBEG00000014480)	dusp2 (ENSLBEG00000014468)	MYORG (ENSLBEG00000014445)	ENSLBEG00000014426	ENSLBEG00000014417	ENSLBEG00000014404	msh3 (ENSLBEG00000014307) #19	rasgrf2b (ENSLBEG00000014136) #21	ckmt2a (ENSLBEG00000014005) #22	ENSLBEG00000013984	otpb (ENSLBEG00000013958)	scamp1 (ENSLBEG00000013925)	ENSLBEG00000013893	ENSLBEG00000013815	ENSLBEG00000013775	pdxp (ENSLBEG00000013764)	ENSLBEG00000013739	spef2 (ENSLBEG00000013670)	lifra (ENSLBEG00000013610)
Ballan wrasse	MODERN SPECIES	3128																ckmt2a (ENSLBEG00000010485) #22
Ballan wrasse	MODERN SPECIES	4321																ckmt2a (ENSLBEG00000015765) #22
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01100000263649	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226
Perciformes	ANCESTRAL SPECIES	6	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01030000235339	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000169964	ENSGT00940000161008.e	ENSGT01030000235339	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Pike perch	MODERN SPECIES	2	KCNIP3 (ENSSLUG00000016877)	pcna (ENSSLUG00000016897)	zgc:152830 (ENSSLUG00000016909)	FAHD2A (ENSSLUG00000016946)	gpat2 (ENSSLUG00000016968)	adra2b (ENSSLUG00000016980)	dusp2 (ENSSLUG00000016989)	ENSSLUG00000016996	MYORG (ENSSLUG00000017002)	ENSSLUG00000017023	ENSSLUG00000017029	ENSSLUG00000017036	msh3 (ENSSLUG00000017157) #19	rasgrf2b (ENSSLUG00000019220) #21	ENSSLUG00000019334	ckmt2a (ENSSLUG00000019339) #22	ENSSLUG00000019349	otpb (ENSSLUG00000019355)	scamp1 (ENSSLUG00000019364)	ENSSLUG00000019381	ENSSLUG00000019395	mrps36 (ENSSLUG00000019599)	pdxp (ENSSLUG00000019602)	ENSSLUG00000019605	spef2 (ENSSLUG00000019614)	ENSSLUG00000019629	ENSSLUG00000019635	cdo1 (ENSSLUG00000019640)	AP3S1 (ENSSLUG00000019651)	COMMD10 (ENSSLUG00000019665)	ENSSLUG00000019670
Channel bull blenny	MODERN SPECIES	23	ENSCGOG00000006790	rassf2a (ENSCGOG00000006779)	SLC23A2 (ENSCGOG00000005939)	KCNIP3 (ENSCGOG00000005862)	pcna (ENSCGOG00000005811)	zgc:152830 (ENSCGOG00000005784)	FAHD2A (ENSCGOG00000005759)	gpat2 (ENSCGOG00000005718)	adra2b (ENSCGOG00000005707)	dusp2 (ENSCGOG00000005706)	MYORG (ENSCGOG00000005697)	MYORG (ENSCGOG00000005693)	ENSCGOG00000005690	msh3 (ENSCGOG00000004680) #19	rasgrf2b (ENSCGOG00000002979) #21	ckmt2a (ENSCGOG00000002876) #22	ENSCGOG00000002872	ENSCGOG00000002869	otpb (ENSCGOG00000002852)	scamp1 (ENSCGOG00000002612)	ENSCGOG00000002610	ENSCGOG00000002535	ENSCGOG00000002463	mrps36 (ENSCGOG00000002452)	pdxp (ENSCGOG00000002454)	ENSCGOG00000002446	spef2 (ENSCGOG00000002432)	lifra (ENSCGOG00000002427)	ENSCGOG00000002424	cdo1 (ENSCGOG00000002420)	AP3S1 (ENSCGOG00000002321)
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01030000235339	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000003122.a.a.b.a	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Lumpfish	MODERN SPECIES	24	rassf2a (ENSCLMG00005017435)	SLC23A2 (ENSCLMG00005017439)	KCNIP3 (ENSCLMG00005017501)	ENSCLMG00005017502	pcna (ENSCLMG00005017503)	zgc:152830 (ENSCLMG00005017504)	FAHD2A (ENSCLMG00005017509)	gpat2 (ENSCLMG00005004253)	adra2b (ENSCLMG00005004258)	dusp2 (ENSCLMG00005004273)	MYORG (ENSCLMG00005004283)	ENSCLMG00005004295	ENSCLMG00005004307	msh3 (ENSCLMG00005004567) #19	rasgrf2b (ENSCLMG00005007737) #21	ckmt2a (ENSCLMG00005007740) #22	ENSCLMG00005007741	ENSCLMG00005007742	otpb (ENSCLMG00005007743)	SCAMP1 (ENSCLMG00005007744)	ENSCLMG00005007746	ENSCLMG00005007748	ENSCLMG00005007768	mrps36 (ENSCLMG00005007770)	pdxp (ENSCLMG00005007773)	ENSCLMG00005007801	ENSCLMG00005007804	ENSCLMG00005007805	ENSCLMG00005007807	ENSCLMG00005007808	cdo1 (ENSCLMG00005007809)
Stickleback	MODERN SPECIES	12	ENSGACG00000005652	ENSGACG00000005658	rassf2a (ENSGACG00000005664)	SLC23A2 (ENSGACG00000005689)	KCNIP3 (ENSGACG00000005703)	pcna (ENSGACG00000005726)	zgc:152830 (ENSGACG00000005772)	FAHD2A (ENSGACG00000005837)	gpat2 (ENSGACG00000005887)	ENSGACG00000005900	dusp2 (ENSGACG00000005902)	MYORG (ENSGACG00000005917)	ENSGACG00000005923	msh3 (ENSGACG00000005927) #19	rasgrf2b (ENSGACG00000005945) #21	ckmt2a (ENSGACG00000005959) #22	ENSGACG00000005997	otpb (ENSGACG00000006004)	scamp1 (ENSGACG00000006008)	lhfpl2b (ENSGACG00000006024)	ENSGACG00000006029	pdxp (ENSGACG00000006094)	ENSGACG00000006107	spef2 (ENSGACG00000006116)	lifra (ENSGACG00000006134)	ENSGACG00000006139	ENSGACG00000006143	cdo1 (ENSGACG00000006149)	AP3S1 (ENSGACG00000006172)	COMMD10 (ENSGACG00000006209)	sema6a (ENSGACG00000006212)
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01100000263927.a	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00730000113582	ENSGT00940000158546	ENSGT00950000182953.C.c	ENSGT00940000158782.d.a	ENSGT00390000004965	ENSGT00530000063255.C	ENSGT00940000160571	ENSGT00520000055570.A.b	ENSGT00940000161915.a	ENSGT00940000161605	ENSGT00940000161008.e	ENSGT01100000263927.a	ENSGT01070000253853	ENSGT00550000074949 #19	ENSGT00940000155679.c #21	ENSGT00950000182772.B.a.a.h #22	ENSGT00940000177396	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00940000157310.h	ENSGT00990000203589.b.a	ENSGT00390000003122.a.a.b.b	ENSGT00390000017443	ENSGT00940000162045	ENSGT00940000161263	ENSGT00940000181535	ENSGT00390000008160	ENSGT00940000165259.b	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a
European seabass	MODERN SPECIES	13	SLC23A2 (ENSDLAG00005024641)	ENSDLAG00005024577	ENSDLAG00005024572	zgc:152830 (ENSDLAG00005024558)	FAHD2A (ENSDLAG00005024557)	gpat2 (ENSDLAG00005024535)	adra2b (ENSDLAG00005033177)	dusp2 (ENSDLAG00005032250)	ENSDLAG00005024525	ENSDLAG00005024521	ENSDLAG00005026851	ENSDLAG00005032572	ENSDLAG00005024511	MSH3 (ENSDLAG00005024340) #19	rasgrf2b (ENSDLAG00005024104) #21	CKMT2 (ENSDLAG00005024026) #22	ENSDLAG00005024019	otpb (ENSDLAG00005024016)	ENSDLAG00005031263	ENSDLAG00005028977	ENSDLAG00005023874	ENSDLAG00005023863	ENSDLAG00005033051	ENSDLAG00005023814	ENSDLAG00005023778	ENSDLAG00005023770	ENSDLAG00005030923	ENSDLAG00005033965	COMMD10 (ENSDLAG00005023741)	ENSDLAG00005023462	DMXL1 (ENSDLAG00005022646)
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005013503	rassf2a (ENSLCRG00005013502)	SLC23A2 (ENSLCRG00005013325)	KCNIP3 (ENSLCRG00005013318)	pcna (ENSLCRG00005013316)	zgc:152830 (ENSLCRG00005013314)	FAHD2A (ENSLCRG00005013311)	gpat2 (ENSLCRG00005013309)	adra2b (ENSLCRG00005013308)	dusp2 (ENSLCRG00005013307)	MYORG (ENSLCRG00005013305)	ENSLCRG00005013300	ENSLCRG00005013297	msh3 (ENSLCRG00005013001) #19	rasgrf2b (ENSLCRG00005011501) #21	ckmt2a (ENSLCRG00005011463) #22	ENSLCRG00005011461	ENSLCRG00005011458	otpb (ENSLCRG00005011453)	scamp1 (ENSLCRG00005011448)	ENSLCRG00005011443	ENSLCRG00005011410	ENSLCRG00005011386	PRADC1 (ENSLCRG00005011382)	ENSLCRG00005011282	ENSLCRG00005011280	utp15 (ENSLCRG00005011271)	ENSLCRG00005011269	ENSLCRG00005011268	ENSLCRG00005011267	ykt6 (ENSLCRG00005011264)
Gilthead seabream	MODERN SPECIES	19	SLC23A2 (ENSSAUG00010002278)	KCNIP3 (ENSSAUG00010004674)	PCNA (ENSSAUG00010004680)	zgc:152830 (ENSSAUG00010004686)	FAHD2A (ENSSAUG00010004692)	gpat2 (ENSSAUG00010004696)	adra2b (ENSSAUG00010004701)	dusp2 (ENSSAUG00010004702)	MYORG (ENSSAUG00010004704)	ENSSAUG00010004706	ENSSAUG00010004708	ENSSAUG00010004710	ENSSAUG00010004713	msh3 (ENSSAUG00010004740) #19	rasgrf2b (ENSSAUG00010004967) #21	ckmt2a (ENSSAUG00010005054) #22	ENSSAUG00010005057	otpb (ENSSAUG00010005060)	scamp1 (ENSSAUG00010005069)	ENSSAUG00010005078	ENSSAUG00010005094	mrps36 (ENSSAUG00010005217)	pdxp (ENSSAUG00010005219)	ENSSAUG00010005220	spef2 (ENSSAUG00010005223)	ENSSAUG00010005225	CEP78 (ENSSAUG00010005227)	cdo1 (ENSSAUG00010005231)	AP3S1 (ENSSAUG00010005237)	COMMD10 (ENSSAUG00010005240)	sema6a (ENSSAUG00010005307)
Protacanthopterygii	ANCESTRAL SPECIES	77	ENSGT00670000098179.d.a	ENSGT00670000098179.d.b	ENSGT00940000164013	ENSGT00390000015757.z	ENSGT00940000157438.d	ENSGT00390000015757.y	ENSGT00940000155460	ENSGT00390000002216	ENSGT00400000024390	ENSGT00940000166302.d	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654.`f.b	ENSGT00940000180245	ENSGT00940000153654.af	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT00550000074856.c.a	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00940000155101.e	ENSGT00940000165179.a	ENSGT00940000157468.b	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B
Northern pike	MODERN SPECIES	13	ENSELUG00000002156	dusp4 (ENSELUG00000002163)	ENSELUG00000002184	hspb9l (ENSELUG00000002193)	ENSELUG00000001380	pum3 (ENSELUG00000002215)	KCNV2 (ENSELUG00000002219)	vldlr (ENSELUG00000002236)	ENSELUG00000002261	spp1 (ENSELUG00000002267)	ENSELUG00000002280	dmtn (ENSELUG00000002290)	pbdc1 (ENSELUG00000002300)	xpo7 (ENSELUG00000002329)	RASGRF2 (ENSELUG00000002372) #21	ckmt2a (ENSELUG00000002389) #22	ENSELUG00000029352	UBE2L5 (ENSELUG00000002395)	ENSELUG00000002399	ENSELUG00000028537	ENSELUG00000002402	ENSELUG00000025888	ENSELUG00000030963	ENSELUG00000002405	HIC2 (ENSELUG00000002408)	pi4kaa (ENSELUG00000002430)	SLC25A1 (ENSELUG00000002451)	VDAC3 (ENSELUG00000002460)	tor4aa (ENSELUG00000002462)	brap (ENSELUG00000002478)	NAA25 (ENSELUG00000002508)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.a.i #22
Huchen	MODERN SPECIES	2123															furina (ENSHHUG00000024257)	ENSHHUG00000024433 #22	ENSHHUG00000024435	ENSHHUG00000024449	ENSHHUG00000024465	ENSHHUG00000024480	si:ch211-122f10.4 (ENSHHUG00000024484)	slc38a7 (ENSHHUG00000024501)	got2b (ENSHHUG00000024523)	ENSHHUG00000024547	CALB2 (ENSHHUG00000024552)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	179													ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.e.b #21	ENSGT00950000182772.B.a.a.j.a #22	ENSGT00940000153654.`f.a.a	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d	ENSGT00940000155101.e.i	ENSGT00970000197628	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000157468.a.a.b	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000159066.f	ENSGT00940000156161.A.o.b	ENSGT00670000098179.d.b.b.b	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.a	ENSGT00940000157438.d.d	ENSGT00390000015757.y	ENSGT00940000155460.n.a	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000154115.d.c	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.e.b #21	ENSGT00950000182772.B.a.a.j.a #22	ENSGT00940000153654.af	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d	ENSGT00940000155101.e.i	ENSGT00940000156428.bd	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969
Salmo	ANCESTRAL SPECIES	13	ENSGT00940000159066.f	ENSGT00940000156161.A.o.b	ENSGT00670000098179.d.b.b.b	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.a	ENSGT00940000157438.d.d	ENSGT00390000015757.y	ENSGT00940000155460.n.a	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000166302.d	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00940000153139.B.a.d	ENSGT00390000016333.j	ENSGT00940000155679.d.e.b #21	ENSGT00950000182772.B.a.a.j.a #22	ENSGT00940000153654.af	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d	ENSGT00940000155101.e.i	ENSGT00940000156428.bd	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969
River trout	MODERN SPECIES	6	dusp4 (ENSSTUG00000035739)	ENSSTUG00000035778	ENSSTUG00000036319	hspb9l (ENSSTUG00000036326)	ENSSTUG00000036340	KCNV2 (ENSSTUG00000002090)	vldlr (ENSSTUG00000002627)	ENSSTUG00000011123	spp1 (ENSSTUG00000011173)	ENSSTUG00000011182	ENSSTUG00000011189	dmtn (ENSSTUG00000011230)	pbdc1 (ENSSTUG00000011252)	xpo7 (ENSSTUG00000011342)	RASGRF2 (ENSSTUG00000013940) #21	ckmt2a (ENSSTUG00000014287) #22	UBE2L5 (ENSSTUG00000014402)	HIC2 (ENSSTUG00000014445)	SLC25A1 (ENSSTUG00000014587)	ENSSTUG00000015037	TOR4A (ENSSTUG00000015099)	brap (ENSSTUG00000015117)	NAA25 (ENSSTUG00000015362)	pitpnb (ENSSTUG00000015426)	ENSSTUG00000015458	ENSSTUG00000015480	ENSSTUG00000015699	ptpn11a (ENSSTUG00000015715)	tmed2 (ENSSTUG00000015968)	ddx55 (ENSSTUG00000015993)	EIF2B1 (ENSSTUG00000016163)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000076468	ENSSSAG00000076482	ENSSSAG00000076475	vldlr (ENSSSAG00000076621)	ENSSSAG00000079081	spp1 (ENSSSAG00000095024)	spp1 (ENSSSAG00000097659)	spp1 (ENSSSAG00000091532)	ENSSSAG00000106802	ENSSSAG00000079106	dmtn (ENSSSAG00000094544)	ENSSSAG00000079534	xpo7 (ENSSSAG00000119701)	ENSSSAG00000099207	ENSSSAG00000080140 #21	ENSSSAG00000080382 #22	ub2l3 (ENSSSAG00000080389)	ENSSSAG00000103870	pi4kaa (ENSSSAG00000080418)	ENSSSAG00000119324	ENSSSAG00000080605	tor4aa (ENSSSAG00000080619)	ENSSSAG00000080521	ENSSSAG00000080629	pitpnb (ENSSSAG00000080688)	ENSSSAG00000080714	ENSSSAG00000109130	ENSSSAG00000080560	ptpn11a (ENSSSAG00000004427)	tmed2 (ENSSSAG00000108962)	ddx55 (ENSSSAG00000005403)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000156161.A.o.b	ENSGT00670000098179.d.b.b.b	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.a	ENSGT00940000164013.c	ENSGT00390000015757.y	ENSGT00940000157438.d.d	ENSGT00940000155460.n.a	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000154115.d.c	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.e.b #21	ENSGT00950000182772.B.a.a.j.a #22	ENSGT00940000153654.`f.a.a	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d	ENSGT00940000155101.e.i	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d
Rainbow trout	MODERN SPECIES	3	dusp4 (ENSOMYG00000026384)	ENSOMYG00000053420	ENSOMYG00000026060	ENSOMYG00000025515	ENSOMYG00000025501	ENSOMYG00000025435	vldlr (ENSOMYG00000022122)	ENSOMYG00000021684	spp1 (ENSOMYG00000021668)	ENSOMYG00000073848	ENSOMYG00000021617	dmtn (ENSOMYG00000069825)	ENSOMYG00000021586	xpo7 (ENSOMYG00000021515)	ENSOMYG00000019617 #21	ENSOMYG00000019051 #22	ENSOMYG00000019023	ENSOMYG00000019004	ENSOMYG00000054995	pi4kaa (ENSOMYG00000018843)	ENSOMYG00000042313	ENSOMYG00000018770	ENSOMYG00000070169	ENSOMYG00000018757	tor4aa (ENSOMYG00000018751)	ENSOMYG00000018738	ENSOMYG00000018459	pitpnb (ENSOMYG00000018388)	ENSOMYG00000035441	ENSOMYG00000018115	ENSOMYG00000076972
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00670000098179.d.b.b.b	ENSGT00670000098179.d.a.l	ENSGT00670000098179.d.b.b.a	ENSGT00940000164013.c	ENSGT00390000015757.y	ENSGT00940000157438.d.d	ENSGT00940000155460.n.a	ENSGT00390000002216.c.a	ENSGT00400000024390.d	ENSGT00940000154115.d.c	ENSGT00950000182850.a.b.b.b.b.h	ENSGT00390000016333.j	ENSGT00940000153139.B.a.d	ENSGT00940000155679.d.f #21	ENSGT00940000155679.d.e.b #21	ENSGT00950000182772.B.a.a.j.a #22	ENSGT00940000153654.`f.a.a	ENSGT00940000159978.s.b	ENSGT00550000074798.a.a.q.b.b	ENSGT00550000074856.c.a.d	ENSGT00950000182869.e.b.g.b.c	ENSGT00950000182888.b.e.b	ENSGT00500000044909.d	ENSGT00950000183174.A.d	ENSGT00940000155101.e.i	ENSGT00940000165179.a	ENSGT00940000157468.b.p	ENSGT00940000153876.B.f	ENSGT00940000155143.l.b	ENSGT00550000074969	ENSGT00550000074853.d
Chinook salmon	MODERN SPECIES	340														ENSOTSG00005034487	ENSOTSG00005034489	ckmt2a (ENSOTSG00005034490) #22	ube2l3a (ENSOTSG00005034491)	HIC2 (ENSOTSG00005034493)	PI4KA (ENSOTSG00005034502)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005014667	ENSOKIG00005014650	dusp4 (ENSOKIG00005014631)	ENSOKIG00005014620	ENSOKIG00005013607	hspb9l (ENSOKIG00005013506)	ENSOKIG00005013497	KCNV2 (ENSOKIG00005013491)	vldlr (ENSOKIG00005004075)	ENSOKIG00005003626	spp1 (ENSOKIG00005003610)	ppp3ccb (ENSOKIG00005003539)	ENSOKIG00005003498	pbdc1 (ENSOKIG00005003485)	RASGRF2 (ENSOKIG00005003338) #21	ckmt2a (ENSOKIG00005003317) #22	ube2l3a (ENSOKIG00005003307)	HIC2 (ENSOKIG00005003299)	pi4kaa (ENSOKIG00005002855)	SLC25A1 (ENSOKIG00005002637)	zgc:56235 (ENSOKIG00005002604)	tor4aa (ENSOKIG00005002592)	NAA25 (ENSOKIG00005002458)	pitpnb (ENSOKIG00005002395)	ENSOKIG00005002378	pla2g3 (ENSOKIG00005002265)	ENSOKIG00005002245	ptpn11a (ENSOKIG00005002033)	tmed2 (ENSOKIG00005001942)	ddx55 (ENSOKIG00005001805)	EIF2B1 (ENSOKIG00005001705)
Huchen	MODERN SPECIES	1290													pbdc1 (ENSHHUG00000044068)	xpo7 (ENSHHUG00000043838)	RASGRF2 (ENSHHUG00000043798) #21	ckmt2a (ENSHHUG00000043788) #22	ube2l3a (ENSHHUG00000043765)	HIC2 (ENSHHUG00000043760)	PI4KA (ENSHHUG00000043721)	SLC25A1 (ENSHHUG00000043708)	zgc:56235 (ENSHHUG00000043639)	TOR4A (ENSHHUG00000043636)	brap (ENSHHUG00000043626)	NAA25 (ENSHHUG00000043621)	PITPNB (ENSHHUG00000043586)
Salmoninae	ANCESTRAL SPECIES	353	ENSGT00940000156161.A.p	ENSGT00670000098179.d.a.k	ENSGT00670000098179.d.b.a.a.a	ENSGT00670000098179.d.b.a.a.b	ENSGT00940000164013	ENSGT00390000015757.z	ENSGT00940000157438.d.c	ENSGT00940000155460.n.b	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a #21	ENSGT00950000182772.B.a.a.j.b #22	ENSGT00940000153654.`f.b	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000156428.bd	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a
Huchen	MODERN SPECIES	919	ENSHHUG00000021536	ENSHHUG00000021540	ENSHHUG00000021543	ENSHHUG00000021549	ENSHHUG00000021571	pum3 (ENSHHUG00000021703)	KCNV2 (ENSHHUG00000021749)	vldlr (ENSHHUG00000021769)	ENSHHUG00000023135	spp1 (ENSHHUG00000023157)	ppp3ccb (ENSHHUG00000023176)	dmtn (ENSHHUG00000024558)	pbdc1 (ENSHHUG00000024561)	xpo7 (ENSHHUG00000024568)	RASGRF2 (ENSHHUG00000025044) #21	ckmt2a (ENSHHUG00000025161) #22	UBE2L5 (ENSHHUG00000025304)	ENSHHUG00000025313	PI4KA (ENSHHUG00000025319)	SLC25A1 (ENSHHUG00000025395)	zgc:56235 (ENSHHUG00000025438)	TOR4A (ENSHHUG00000025525)
Salmoninae_a	ANCESTRAL SPECIES	87	ENSGT00940000156161.A.o.a	ENSGT00670000098179.d.a.k	ENSGT00670000098179.d.b.a.a.a	ENSGT00670000098179.d.b.a.a.b	ENSGT00940000164013	ENSGT00390000015757.z	ENSGT00940000157438.d.c	ENSGT00940000155460.n.b	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a #21	ENSGT00950000182772.B.a.a.j.b #22	ENSGT00940000153654.`f.b	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a	ENSGT00940000155122.b.bc.a
Salmo	ANCESTRAL SPECIES	54	ENSGT00940000155983.a.b.d	ENSGT00940000159066.e	ENSGT00940000156161.A.o.a	ENSGT00670000098179.d.a.k	ENSGT00940000164013	ENSGT00390000015757.z	ENSGT00940000157438.d.c	ENSGT00940000155460.n.b	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a #21	ENSGT00950000182772.B.a.a.j.b #22	ENSGT00940000153654.`f.b	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a.a	ENSGT00940000155122.b.bc.a
River trout	MODERN SPECIES	15	ENSSTUG00000046183	ENSSTUG00000046178	ENSSTUG00000046173	ENSSTUG00000046121	pum3 (ENSSTUG00000045740)	KCNV2 (ENSSTUG00000045706)	vldlr (ENSSTUG00000037262)	ENSSTUG00000036957	ENSSTUG00000036946	spp1 (ENSSTUG00000036943)	ppp3ccb (ENSSTUG00000032896)	dmtn (ENSSTUG00000032765)	pbdc1 (ENSSTUG00000032741)	xpo7 (ENSSTUG00000031531)	RASGRF2 (ENSSTUG00000029003) #21	ckmt2a (ENSSTUG00000028892) #22	ENSSTUG00000028864	HIC2 (ENSSTUG00000028859)	pi4kaa (ENSSTUG00000027067)	SLC25A1 (ENSSTUG00000026875)	VDAC3 (ENSSTUG00000026859)	tor4aa (ENSSTUG00000026854)	brap (ENSSTUG00000025931)	NAA25 (ENSSTUG00000025671)	ENSSTUG00000025629	ENSSTUG00000025269	ENSSTUG00000025253	ENSSTUG00000024432	ENSSTUG00000024380	ptpn11a (ENSSTUG00000024087)	tmed2 (ENSSTUG00000024036)
Atlantic salmon	MODERN SPECIES		ENSSSAG00000005301	dusp4 (ENSSSAG00000005289)	ENSSSAG00000004003	ENSSSAG00000085506	ENSSSAG00000046417	pum3 (ENSSSAG00000003731)	ENSSSAG00000003693	vldlr (ENSSSAG00000003279)	ENSSSAG00000003155	spp1 (ENSSSAG00000100947)	pp2bc (ENSSSAG00000001614)	dema (ENSSSAG00000001462)	ENSSSAG00000096570	xpo7 (ENSSSAG00000107149)	ENSSSAG00000000533 #21	ckmt2 (ENSSSAG00000000174) #22	ENSSSAG00000110550	ENSSSAG00000080397	pi4kaa (ENSSSAG00000080982)	ENSSSAG00000100677	ENSSSAG00000080973	tor4aa (ENSSSAG00000099633)	brap (ENSSSAG00000080969)	ENSSSAG00000080800	ENSSSAG00000106460	ENSSSAG00000112958	ENSSSAG00000080542	tmed2 (ENSSSAG00000083448)	ptpn11a (ENSSSAG00000086516)	ENSSSAG00000119820	ENSSSAG00000110143
Oncorhynchus	ANCESTRAL SPECIES	67	ENSGT00940000156161.A.o.a	ENSGT00670000098179.d.a.k	ENSGT00670000098179.d.b.a.a.a	ENSGT00670000098179.d.b.a.a.b	ENSGT00940000164013.d	ENSGT00390000015757.z	ENSGT00940000157438.d.c	ENSGT00940000155460.n.b	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a #21	ENSGT00950000182772.B.a.a.j.b #22	ENSGT00940000153654.af	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000156428.bd	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000072873	ENSOMYG00000074021	ENSOMYG00000074341	ENSOMYG00000077330	ENSOMYG00000044071	pum3 (ENSOMYG00000044752)	ENSOMYG00000044771	vldlr (ENSOMYG00000044977)	ENSOMYG00000046671	spp1 (ENSOMYG00000046677)	ENSOMYG00000046720	dmtn (ENSOMYG00000021598)	ENSOMYG00000046802	xpo7 (ENSOMYG00000046957)	ENSOMYG00000047150 #21	ENSOMYG00000047234 #22	ENSOMYG00000048403	ENSOMYG00000047251	pi4kaa (ENSOMYG00000047266)	ENSOMYG00000047340	ENSOMYG00000071407	ENSOMYG00000047378	tor4aa (ENSOMYG00000047398)	ENSOMYG00000000080	ENSOMYG00000000664	ENSOMYG00000000862	ENSOMYG00000074688	ENSOMYG00000036015	ENSOMYG00000000987	ENSOMYG00000000995	ENSOMYG00000001106
Oncorhynchus_a	ANCESTRAL SPECIES	74	ENSGT00940000159066.e	ENSGT00940000156161.A.o.a	ENSGT00670000098179.d.a.k	ENSGT00670000098179.d.b.a.a.b	ENSGT00940000164013.d	ENSGT00390000015757.z	ENSGT00940000157438.d.c	ENSGT00940000155460.n.b	ENSGT00390000002216.c.b	ENSGT00400000024390.c	ENSGT00940000154115.d.d	ENSGT00950000182850.a.b.b.b.b.g	ENSGT00390000016333.i	ENSGT00940000153139.B.a.c	ENSGT00940000155679.d.e.a #21	ENSGT00950000182772.B.a.a.j.b #22	ENSGT00940000153654.af	ENSGT00940000159978.s.a	ENSGT00550000074798.a.a.q.a	ENSGT00550000074856.c.a.c	ENSGT00950000182869.e.b.g.b.d	ENSGT00950000182888.b.e.a	ENSGT00500000044909.c	ENSGT00950000183174.A.c	ENSGT00940000155101.e.j	ENSGT00940000156428.bd	ENSGT00940000157468.b.o	ENSGT00940000163301.c.a.a.b	ENSGT00940000153876.B.e	ENSGT00940000155143.l.a	ENSGT00390000002172.B.a.a
Coho salmon	MODERN SPECIES	15	ENSOKIG00005015274	ENSOKIG00005015269	ENSOKIG00005015255	ENSOKIG00005015247	ENSOKIG00005015030	pum3 (ENSOKIG00005014917)	KCNV2 (ENSOKIG00005014897)	vldlr (ENSOKIG00005014361)	ENSOKIG00005014319	spp1 (ENSOKIG00005014310)	ENSOKIG00005013086	dmtn (ENSOKIG00005013010)	PBDC1 (ENSOKIG00005012996)	xpo7 (ENSOKIG00005008326)	RASGRF2 (ENSOKIG00005007598) #21	ckmt2a (ENSOKIG00005007515) #22	UBE2L5 (ENSOKIG00005007504)	HIC2 (ENSOKIG00005007498)	pi4kaa (ENSOKIG00005006349)	SLC25A1 (ENSOKIG00005006155)	ENSOKIG00005006099	ENSOKIG00005022139	tor4aa (ENSOKIG00005022121)	brap (ENSOKIG00005021927)	NAA25 (ENSOKIG00005021702)	ENSOKIG00005021621	ENSOKIG00005021330	ENSOKIG00005021257	ENSOKIG00005021216	PTPN11 (ENSOKIG00005020915)	ENSOKIG00005020828
Chinook salmon	MODERN SPECIES	12	dusp4 (ENSOTSG00005008407)	ENSOTSG00005008436	ENSOTSG00005009172	hspb9l (ENSOTSG00005009173)	ENSOTSG00005009175	ENSOTSG00005009184	PUM3 (ENSOTSG00005010371)	KCNV2 (ENSOTSG00005010374)	vldlr (ENSOTSG00005010375)	spp1 (ENSOTSG00005011947)	ppp3ccb (ENSOTSG00005011948)	dmtn (ENSOTSG00005012288)	pbdc1 (ENSOTSG00005012291)	xpo7 (ENSOTSG00005012328)	RASGRF2 (ENSOTSG00005016851) #21	ckmt2a (ENSOTSG00005021213) #22	UBE2L5 (ENSOTSG00005021263)	HIC2 (ENSOTSG00005021264)	PI4KA (ENSOTSG00005021281)	SLC25A1 (ENSOTSG00005022343)	ENSOTSG00005022384	tor4aa (ENSOTSG00005022385)	brap (ENSOTSG00005022387)	NAA25 (ENSOTSG00005022476)	PITPNB (ENSOTSG00005022480)	ENSOTSG00005022492	ENSOTSG00005022571	ptpn11a (ENSOTSG00005022589)	tmed2 (ENSOTSG00005022698)	ERMP1 (ENSOTSG00005022706)	ENSOTSG00005022760
Otomorpha	ANCESTRAL SPECIES	94	ENSGT00390000001437	ENSGT01030000234573.A.b.b.b.l	ENSGT00940000164321.d	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00390000015164	ENSGT00550000074946	ENSGT00530000063672.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00550000074969	ENSGT00940000155143.b	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e
Clupeiformes	ANCESTRAL SPECIES	12	ENSGT00390000001437	ENSGT01030000234573.A.b.b.b.l	ENSGT00730000111133.`b	ENSGT00940000164321.d	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00390000015164	ENSGT00550000074946	ENSGT00530000063672.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00390000001362.a	ENSGT00940000159952.a.a	ENSGT00390000009710	ENSGT00940000157603	ENSGT00940000157310	ENSGT00990000203589.b.b	ENSGT00940000158270	ENSGT00940000158176	ENSGT00390000003122.a.a.a	ENSGT00510000046704.b.a.c	ENSGT00940000156354.p #7	ENSGT00390000006867	ENSGT00940000159243	ENSGT00940000155640.b	ENSGT00940000154396.a
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	13	ENSCHAG00000015579	pdxp (ENSCHAG00000015588)	SETD9 (ENSCHAG00000015607)	mier3a (ENSCHAG00000015660)	grk5 (ENSCHAG00000016016)	ash2l (ENSCHAG00000016087)	pnx (ENSCHAG00000016403)	ENSCHAG00000016447	ykt6 (ENSCHAG00000016618)	ddx56 (ENSCHAG00000016819)	ENSCHAG00000017319	ERAP1 (ENSCHAG00000017379)	ANKRD34B (ENSCHAG00000019227) #17	ENSCHAG00000019233	RASGRF2 (ENSCHAG00000019251) #21	ckmt2a (ENSCHAG00000019423) #22	pi4kaa (ENSCHAG00000019448)	ENSCHAG00000019534	ENSCHAG00000019553	nrp2a (ENSCHAG00000019570)	ENSCHAG00000019707	ENSCHAG00000019715	ENSCHAG00000019728	ENSCHAG00000019732	abcb6a (ENSCHAG00000019814)	ENSCHAG00000020975	ENSCHAG00000020996	ENSCHAG00000021014	ENSCHAG00000021028	ENSCHAG00000021035	slx9 (ENSCHAG00000021057)
Atlantic herring	MODERN SPECIES	23	dimt1l (ENSCHAG00000026650)	kif2a (ENSCHAG00000026560)	ENSCHAG00000026539	unc45b (ENSCHAG00000026166)	pip5k1bb (ENSCHAG00000026085)	fxn (ENSCHAG00000026075)	ENSCHAG00000024618	ENTREP1 (ENSCHAG00000024502)	APBA1 (ENSCHAG00000024443)	ptar1 (ENSCHAG00000024431)	CFAP95 (ENSCHAG00000024428)	mamdc2a (ENSCHAG00000024383)	MYORG (ENSCHAG00000024376)	msh3 (ENSCHAG00000024088) #19	rasgrf2b (ENSCHAG00000023839) #21	ckmt2b (ENSCHAG00000023532) #22	crhbp (ENSCHAG00000023516)	otpb (ENSCHAG00000023505)	lhfpl2a (ENSCHAG00000023502)	ENSCHAG00000023471	ENSCHAG00000023447	homer1b (ENSCHAG00000023423) #7	cdk7 (ENSCHAG00000023401)	serinc5 (ENSCHAG00000023325) #13	thbs4a (ENSCHAG00000021328) #12	mtx3 (ENSCHAG00000021271) #11	SETBP1 (ENSCHAG00000021253)	slc14a2 (ENSCHAG00000021211)	ENSCHAG00000021202	ENSCHAG00000021186	riok2 (ENSCHAG00000021077)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	15	mier3a (ENSDCDG00000000946)	LSM1 (ENSDCDG00000000925)	grk5 (ENSDCDG00000000908)	ash2l (ENSDCDG00000000850)	pnx (ENSDCDG00000000839)	aebp1a (ENSDCDG00000000721)	ykt6 (ENSDCDG00000000687)	ddx56 (ENSDCDG00000000682)	ENSDCDG00000000659	ERAP1 (ENSDCDG00000000612)	oclna (ENSDCDG00000000589)	MARVELD2 (ENSDCDG00000000584)	ENSDCDG00000000406 #15	ANKRD34B (ENSDCDG00000025160) #17	RASGRF2 (ENSDCDG00000024986) #21	ckmt2a (ENSDCDG00000024960) #22	ube2l3a (ENSDCDG00000024955)	hic2 (ENSDCDG00000024951)	pi4kaa (ENSDCDG00000024634)	slc25a1b (ENSDCDG00000024619)	zgc:56235 (ENSDCDG00000024578)	tor4aa (ENSDCDG00000024574)	brap (ENSDCDG00000024397)	ENSDCDG00000024367	ENSDCDG00000024119	poglut1 (ENSDCDG00000024106)	timmdc1 (ENSDCDG00000024099)	ENSDCDG00000024024	DIS3 (ENSDCDG00000023923)	bora (ENSDCDG00000023918)	mzt1 (ENSDCDG00000023916)
Denticle herring	MODERN SPECIES	2	fhip2b (ENSDCDG00000028505)	ncor2 (ENSDCDG00000027112)	mier3b (ENSDCDG00000027021)	kif2a (ENSDCDG00000026300)	unc45b (ENSDCDG00000023465)	pip5k1bb (ENSDCDG00000023395)	fxn (ENSDCDG00000023387)	tjp2b (ENSDCDG00000023358)	ENTREP1 (ENSDCDG00000023329)	APBA1 (ENSDCDG00000022754)	ptar1 (ENSDCDG00000022744)	mamdc2a (ENSDCDG00000022701)	MYORG (ENSDCDG00000022682)	msh3 (ENSDCDG00000022015) #19	rasgrf2b (ENSDCDG00000019736) #21	ckmt2b (ENSDCDG00000019545) #22	ENSDCDG00000019531	otpb (ENSDCDG00000019521)	lonp2 (ENSDCDG00000019429)	lhfpl2b (ENSDCDG00000019410)	ENSDCDG00000019400	homer1b (ENSDCDG00000019346) #7	tent2 (ENSDCDG00000019327) #8	cmya5 (ENSDCDG00000019315) #9	mtx3 (ENSDCDG00000019311) #11	thbs4a (ENSDCDG00000018205) #12	serinc5 (ENSDCDG00000018088) #13	cdk7 (ENSDCDG00000018040)	SETBP1 (ENSDCDG00000017976)	slc14a2 (ENSDCDG00000017377)	lnpep (ENSDCDG00000016984)
Otophysi	ANCESTRAL SPECIES	20	ENSGT00390000001437	ENSGT01030000234573.A.b.b.b.l	ENSGT00940000164321.d	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00390000015164	ENSGT00550000074946	ENSGT00530000063672.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654.bf.a.b	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00550000074969	ENSGT00940000155143.b	ENSGT00940000153876.B	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b	ENSGT00940000165179.a
Characiphysae	ANCESTRAL SPECIES	36	ENSGT00940000153372.B	ENSGT00940000153745.a.b	ENSGT00940000157488.h	ENSGT00950000183012.A.a.c.a	ENSGT00950000182825.B	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00950000182943	ENSGT00950000183162.a.b.i.a	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654.cf	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00550000074969	ENSGT00940000155143.a.a	ENSGT00940000153876.B	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b.t	ENSGT00940000165179.a
Channel catfish	MODERN SPECIES	14	hmgcr (ENSIPUG00000018368)	ENSIPUG00000018397	gcnt4a (ENSIPUG00000018412)	ENSIPUG00000018419	ENSIPUG00000018447	pomt1 (ENSIPUG00000018457)	ccdc180 (ENSIPUG00000018567)	CARD9 (ENSIPUG00000018621)	snapc4 (ENSIPUG00000018664)	entr1 (ENSIPUG00000018714)	ENSIPUG00000018724	ubac1 (ENSIPUG00000018730)	msh3 (ENSIPUG00000018762) #19	rasgrf2 (ENSIPUG00000018821) #21	ENSIPUG00000018939	ckmt2b (ENSIPUG00000018972) #22	ENSIPUG00000019078	otpb (ENSIPUG00000019087)	lhfpl2 (ENSIPUG00000019095)	HOMER1 (ENSIPUG00000019109) #7	papd4 (ENSIPUG00000019140) #8	cmya5 (ENSIPUG00000019194) #9	mtx3 (ENSIPUG00000019217) #11	thbs4 (ENSIPUG00000019257) #12	serinc5 (ENSIPUG00000019413) #13	ENSIPUG00000019423	cdk7 (ENSIPUG00000019436)	SETBP1 (ENSIPUG00000019523)	slc14a2 (ENSIPUG00000019539)	slc14a2 (ENSIPUG00000019611)	LNPEP (ENSIPUG00000019658)
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00940000153372.B	ENSGT00940000153745.a.b	ENSGT00940000157488.h	ENSGT00950000183012.A.a.c.a	ENSGT00950000182825.B	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00950000182943	ENSGT00950000183162.a.b.i.a	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654.cf	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00550000074969	ENSGT00940000155143.a.a	ENSGT00940000153876.B	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b.t	ENSGT00940000165179.a
Electric eel	MODERN SPECIES	96	arsk (ENSEEEG00000014312)	cert1a (ENSEEEG00000013783)	hmgcra (ENSEEEG00000013740)	ankrd31 (ENSEEEG00000013738)	gcnt4a (ENSEEEG00000013737)	fam169aa (ENSEEEG00000013736)	ENSEEEG00000013734	pomt1 (ENSEEEG00000013730)	ENSEEEG00000013726	CARD9 (ENSEEEG00000013725)	snapc4 (ENSEEEG00000013724)	ENSEEEG00000013723	ubac1 (ENSEEEG00000013719)	msh3 (ENSEEEG00000013708) #19	rasgrf2b (ENSEEEG00000013702) #21	ckmt2b (ENSEEEG00000013556) #22	otpb (ENSEEEG00000013548)	lhfpl2b (ENSEEEG00000013547)	homer1b (ENSEEEG00000013546) #7	tent2 (ENSEEEG00000013409) #8	cmya5 (ENSEEEG00000013394) #9	mtx3 (ENSEEEG00000013390) #11	thbs4a (ENSEEEG00000013386) #12	serinc5 (ENSEEEG00000013377) #13	cdk7 (ENSEEEG00000013356)	SETBP1 (ENSEEEG00000013351)	slc14a2 (ENSEEEG00000013327)	lnpep (ENSEEEG00000013293)	erap2 (ENSEEEG00000013049)	rgmb (ENSEEEG00000013024)	MYORG (ENSEEEG00000013021)
Characoidei	ANCESTRAL SPECIES	35	ENSGT00390000006030.d.b	ENSGT00940000153372.B	ENSGT00940000153745.a.b	ENSGT00940000157488.h	ENSGT00950000183012.A.a.c.a	ENSGT00940000167011	ENSGT00940000156317.w.a	ENSGT00940000161102	ENSGT00950000182943	ENSGT00950000183162.a.b.i.a	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654.cf	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT01030000235069	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00550000074969	ENSGT00940000155143.a.a	ENSGT00940000153876.B	ENSGT00940000163301.c.a.a.b	ENSGT00940000157468.b.t	ENSGT00940000165179.a
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	12	tacr1b (ENSAMXG00000042960)	SLC4A5 (ENSAMXG00000036670)	vps37bb (ENSAMXG00000020192)	ENSAMXG00000020178	ENSAMXG00000020171	CNNM3 (ENSAMXG00000040674)	il1b (ENSAMXG00000031873)	il1b (ENSAMXG00000035729)	purbb (ENSAMXG00000020161)	ERAP1 (ENSAMXG00000004920)	oclna (ENSAMXG00000043628)	MARVELD2 (ENSAMXG00000020131)	ENSAMXG00000035116 #15	ANKRD34B (ENSAMXG00000024920) #17	RASGRF2 (ENSAMXG00000020123) #21	ckmt2a (ENSAMXG00000042032) #22	ube2l3a (ENSAMXG00000043475)	hic2 (ENSAMXG00000024918)	pi4kaa (ENSAMXG00000036754)	slc25a1b (ENSAMXG00000042164)	zgc:56235 (ENSAMXG00000020061)	tor4aa (ENSAMXG00000024916)	brap (ENSAMXG00000041761)	NAA25 (ENSAMXG00000019973)	ddx55 (ENSAMXG00000019947)	tmed2 (ENSAMXG00000031539)	ptpn11a (ENSAMXG00000032054)	ENSAMXG00000034559	ENSAMXG00000032227	ENSAMXG00000019856	ENSAMXG00000036121
Mexicana tetra	MODERN SPECIES	26	nol6 (ENSAMXG00000007881)	arsk (ENSAMXG00000007903)	cert1a (ENSAMXG00000007931)	hmgcra (ENSAMXG00000007971)	ENSAMXG00000030426	gcnt4a (ENSAMXG00000025868)	ENSAMXG00000031093	pomt1 (ENSAMXG00000007997)	ENSAMXG00000041161	CARD9 (ENSAMXG00000008047)	snapc4 (ENSAMXG00000008074)	entr1 (ENSAMXG00000035103)	ubac1 (ENSAMXG00000008111)	msh3 (ENSAMXG00000008122) #19	rasgrf2b (ENSAMXG00000008134) #21	ckmt2b (ENSAMXG00000008159) #22	otpb (ENSAMXG00000032072)	lhfpl2b (ENSAMXG00000038967)	homer1b (ENSAMXG00000008210) #7	tent2 (ENSAMXG00000008240) #8	cmya5 (ENSAMXG00000038906) #9	mtx3 (ENSAMXG00000036302) #11	thbs4a (ENSAMXG00000008326) #12	serinc5 (ENSAMXG00000008404) #13	cdk7 (ENSAMXG00000008454)	SETBP1 (ENSAMXG00000008471)	slc14a2 (ENSAMXG00000008491)	lnpep (ENSAMXG00000008503)	erap2 (ENSAMXG00000008517)	rgmb (ENSAMXG00000008527)	ENSAMXG00000043723
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	29	SLC4A5 (ENSPNAG00000010288)	vps37bb (ENSPNAG00000010360)	ENSPNAG00000010418	CNNM4 (ENSPNAG00000010478)	CNNM3 (ENSPNAG00000010529)	il1b (ENSPNAG00000001603)	il1b (ENSPNAG00000011887)	il1b (ENSPNAG00000002024)	purbb (ENSPNAG00000002031)	ERAP1 (ENSPNAG00000011991)	oclna (ENSPNAG00000012014)	MARVELD2 (ENSPNAG00000002079)	ENSPNAG00000002089 #15	ANKRD34B (ENSPNAG00000006897) #17	RASGRF2 (ENSPNAG00000002184) #21	ckmt2a (ENSPNAG00000012346) #22	ube2l3a (ENSPNAG00000002222)	hic2 (ENSPNAG00000002230)	pi4kaa (ENSPNAG00000002268)	ENSPNAG00000012510	slc25a1b (ENSPNAG00000012559)	zgc:56235 (ENSPNAG00000012589)	tor4aa (ENSPNAG00000012601)	brap (ENSPNAG00000002344)	NAA25 (ENSPNAG00000012760)	ddx55 (ENSPNAG00000012855)	tmed2 (ENSPNAG00000007181)	ptpn11a (ENSPNAG00000002463)	ENSPNAG00000014091	ENSPNAG00000014206	ENSPNAG00000014224
Red-bellied piranha	MODERN SPECIES	17	nol6 (ENSPNAG00000028102)	arsk (ENSPNAG00000006490)	cert1a (ENSPNAG00000028148)	hmgcra (ENSPNAG00000028218)	ankrd31 (ENSPNAG00000004792)	gcnt4a (ENSPNAG00000004329)	ENSPNAG00000028255	pomt1 (ENSPNAG00000028333)	ENSPNAG00000028384	CARD9 (ENSPNAG00000028461)	ENSPNAG00000028482	entr1 (ENSPNAG00000028516)	ubac1 (ENSPNAG00000005048)	msh3 (ENSPNAG00000006495) #19	rasgrf2b (ENSPNAG00000004417) #21	ckmt2b (ENSPNAG00000006567) #22	otpb (ENSPNAG00000028823)	lhfpl2b (ENSPNAG00000006173)	homer1b (ENSPNAG00000028940) #7	tent2 (ENSPNAG00000006395) #8	cmya5 (ENSPNAG00000006794) #9	mtx3 (ENSPNAG00000029051) #11	thbs4a (ENSPNAG00000004896) #12	serinc5 (ENSPNAG00000006628) #13	cdk7 (ENSPNAG00000029255)	SETBP1 (ENSPNAG00000004549)	slc14a2 (ENSPNAG00000005698)	lnpep (ENSPNAG00000029341)	erap2 (ENSPNAG00000004748)	ENSPNAG00000029370	rgmb (ENSPNAG00000029414)
Cyprinoidei	ANCESTRAL SPECIES	85	ENSGT00390000001437	ENSGT01030000234573.A.b.b.b.l	ENSGT00940000164321.d	ENSGT00390000010474	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00390000015164	ENSGT00550000074946	ENSGT00530000063672.b	ENSGT00730000110989.c.a	ENSGT00940000155771.c	ENSGT00940000154290.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a #22	ENSGT00940000153654.bf.a.b	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b	ENSGT00950000182888.b	ENSGT00500000044909	ENSGT00950000183174.A	ENSGT00550000074969	ENSGT00940000155143.b	ENSGT00940000153876.B	ENSGT00940000157468.b	ENSGT00940000165179.a	ENSGT00940000156428	ENSGT00940000155101.e
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	1	SETD9 (ENSDARG00000074456)	mier3a (ENSDARG00000006253)	grk5 (ENSDARG00000032801)	ash2l (ENSDARG00000060392)	pnx (ENSDARG00000025899)	aebp1a (ENSDARG00000091726)	ykt6 (ENSDARG00000038308)	ddx56 (ENSDARG00000020913)	ENSDARG00000038302	ERAP1 (ENSDARG00000013024)	oclna (ENSDARG00000005108)	MARVELD2 (ENSDARG00000025076)	ENSDARG00000075747 #15	ANKRD34B (ENSDARG00000077086) #17	RASGRF2 (ENSDARG00000075054) #21	ckmt2a (ENSDARG00000069615) #22	ube2l3a (ENSDARG00000112087)	hic2 (ENSDARG00000100497)	pi4kaa (ENSDARG00000076724)	slc25a1b (ENSDARG00000076381)	zgc:56235 (ENSDARG00000116680)	tor4aa (ENSDARG00000010145)	brap (ENSDARG00000008560)	NAA25 (ENSDARG00000075446)	ddx55 (ENSDARG00000009864)	tmed2 (ENSDARG00000026908)	ptpn11a (ENSDARG00000020334)	ENSDARG00000063436	pla2g3 (ENSDARG00000008948)	TTC28 (ENSDARG00000114920)	pitpnb (ENSDARG00000036005)
Zebrafish	MODERN SPECIES	20	cert1a (ENSDARG00000024325)	hmgcra (ENSDARG00000052734)	ankrd31 (ENSDARG00000052731)	gcnt4a (ENSDARG00000035198)	fam169aa (ENSDARG00000059719)	zgc:194398 (ENSDARG00000078250)	pomt1 (ENSDARG00000067670)	ENSDARG00000032372	CARD9 (ENSDARG00000067672)	snapc4 (ENSDARG00000067673)	entr1 (ENSDARG00000095515)	ubac1 (ENSDARG00000059722)	msh3 (ENSDARG00000063276) #19	rasgrf2b (ENSDARG00000002816) #21	ENSDARG00000104979	ckmt2b (ENSDARG00000039929) #22	otpb (ENSDARG00000058379)	lhfpl2b (ENSDARG00000098153)	homer1b (ENSDARG00000101759) #7	tent2 (ENSDARG00000099679) #8	cmya5 (ENSDARG00000061379) #9	mtx3 (ENSDARG00000090195) #11	thbs4a (ENSDARG00000102777) #12	serinc5 (ENSDARG00000008153) #13	cdk7 (ENSDARG00000051916)	SETBP1 (ENSDARG00000093799)	slc14a2 (ENSDARG00000051914)	lnpep (ENSDARG00000100394)	erap2 (ENSDARG00000098618)	rgmb (ENSDARG00000079323)	MYORG (ENSDARG00000104260)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	174	ENSGT00390000010474.d	ENSGT00390000015164.db.a.b	ENSGT00550000074946	ENSGT00530000063672.b	ENSGT00940000159086.p	ENSGT00730000110989.c.a.a	ENSGT00940000155771.c.a	ENSGT00940000154290.b.a #15	ENSGT00940000164699.a.a	ENSGT00730000110989.c.a.b	ENSGT00940000155771.c.b	ENSGT00940000154290.b.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d.h #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.u.a #22	ENSGT00940000155679.d.g #21	ENSGT00950000182772.B.a.a.u.b #22	ENSGT00940000153654.bf.a.b	ENSGT00940000159978.q.a	ENSGT00550000074798.a.a.f	ENSGT00940000159978.q.b	ENSGT00550000074798.a.a.e	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b.f	ENSGT00950000182888.b.k.b	ENSGT00500000044909.a	ENSGT00950000183174.A.a	ENSGT00550000074969.a	ENSGT00950000182869.e.b.g.b.e	ENSGT00950000182888.b.k.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2331															RASGRF2 (ENSCARG00000038351) #21	ckmt2a (ENSCARG00000038110) #22	ube2l3a (ENSCARG00000038069)
Goldfish	MODERN SPECIES	28	ENSCARG00000033081	gdnfa (ENSCARG00000033070)	ENSCARG00000033064	ENSCARG00000033058	ENSCARG00000032995	opn4xa (ENSCARG00000032853)	pdlim5b (ENSCARG00000032764)	ykt6 (ENSCARG00000032735)	ddx56 (ENSCARG00000068750)	ENSCARG00000068727	oclna (ENSCARG00000068718)	MARVELD2 (ENSCARG00000068711)	ENSCARG00000067487 #15	ANKRD34B (ENSCARG00000067298) #17	RASGRF2 (ENSCARG00000065937) #21	ckmt2a (ENSCARG00000065833) #22	ube2l3a (ENSCARG00000065821)	hic2 (ENSCARG00000065814)	PLK2 (ENSCARG00000065705)	si:dkey-190g11.3 (ENSCARG00000065679)	RAB3C (ENSCARG00000065659)	PDE4D (ENSCARG00000064523)	ELOVL7 (ENSCARG00000064422)	ZSWIM6 (ENSCARG00000064195)	KIF2A (ENSCARG00000063762)	PITPNM2 (ENSCARG00000063083)	MPHOSPH9 (ENSCARG00000063012)	CDK2AP1 (ENSCARG00000062972)	sbno1 (ENSCARG00000061047)	kmt5aa (ENSCARG00000060929)	snrnp35 (ENSCARG00000060909)
Cyprininae_a	ANCESTRAL SPECIES	294	ENSGT01010000222762.b.a	ENSGT00940000162045	ENSGT00390000001437	ENSGT01030000234573.A.b.b.b.l.a	ENSGT00940000164321.d.b	ENSGT00390000010474.d	ENSGT00550000074946	ENSGT00530000063672.b.h	ENSGT00940000164699.a.a	ENSGT00730000110989.c.a.b	ENSGT00940000155771.c.b	ENSGT00940000154290.b.b #15	ENSGT00390000012355.A.a.a.b.a #17	ENSGT00940000155679.d.h #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.u.a #22	ENSGT00940000159978.q.a	ENSGT00550000074798.a.a.f	ENSGT00950000182869.e.b.g.b.e	ENSGT00950000182888.b.k.a	ENSGT00500000044909.b	ENSGT00950000183174.A.b	ENSGT00550000074969.b
Common carp reference	MODERN SPECIES	32	ENSCCRG00000032683	ccl27b (ENSCCRG00000032664)	ENSCCRG00000032644	mier3a (ENSCCRG00000055092)	grk5 (ENSCCRG00000081589)	ash2l (ENSCCRG00000051361)	ENSCCRG00000040656	ENSCCRG00000010433	ENSCCRG00000040641	ENSCCRG00000031471	oclna (ENSCCRG00000075127)	ENSCCRG00000005595	ENSCCRG00000005711 #15	ENSCCRG00000055270 #17	ENSCCRG00000025388 #21	ckmt2a (ENSCCRG00000016808) #22	ENSCCRG00000066521	hic2 (ENSCCRG00000055412)	pi4kaa (ENSCCRG00000079867)	zgc:56235 (ENSCCRG00000080198)	tor4aa (ENSCCRG00000063616)	brap (ENSCCRG00000018510)	ENSCCRG00000019201	ddx55 (ENSCCRG00000019303)	ENSCCRG00000059126	tmed2 (ENSCCRG00000008628)	ptpn11a (ENSCCRG00000019379)	ENSCCRG00000019721	pla2g3 (ENSCCRG00000058692)	TTC28 (ENSCCRG00000070435)	pitpnb (ENSCCRG00000042165)
Golden-line barbel	MODERN SPECIES	358	ENSSGRG00000018312	pdxp (ENSSGRG00000018311)	SETD9 (ENSSGRG00000018310)	mier3a (ENSSGRG00000018309)	grk5 (ENSSGRG00000018308)	ash2l (ENSSGRG00000017778)	ykt6 (ENSSGRG00000017764)	ddx56 (ENSSGRG00000017716)	ERAP1 (ENSSGRG00000017491)	oclna (ENSSGRG00000017477)	MARVELD2 (ENSSGRG00000017475)	ENSSGRG00000017473 #15	ANKRD34B (ENSSGRG00000017472) #17	RASGRF2 (ENSSGRG00000017155) #21	ENSSGRG00000017142	ckmt2a (ENSSGRG00000016522) #22	ube2l3a (ENSSGRG00000016493)	hic2 (ENSSGRG00000016491)	pi4kaa (ENSSGRG00000016155)
Cyprininae	ANCESTRAL SPECIES	174	ENSGT00550000074946	ENSGT00530000063672.b	ENSGT00940000159086.p	ENSGT00730000110989.c.a.a	ENSGT00940000155771.c.a	ENSGT00940000154290.b.a #15	ENSGT00940000164699.a.a	ENSGT00730000110989.c.a.b	ENSGT00940000155771.c.b	ENSGT00940000154290.b.b #15	ENSGT00390000012355.A.a.a.b #17	ENSGT00940000155679.d.h #21	ENSGT00940000180245	ENSGT00950000182772.B.a.a.u.a #22	ENSGT00940000155679.d.g #21	ENSGT00950000182772.B.a.a.u.b #22	ENSGT00940000153654.bf.a.b	ENSGT00940000159978.q.a	ENSGT00550000074798.a.a.f	ENSGT00940000159978.q.b	ENSGT00550000074798.a.a.e	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b.f	ENSGT00950000182888.b.k.b	ENSGT00500000044909.a	ENSGT00950000183174.A.a	ENSGT00550000074969.a	ENSGT00950000182869.e.b.g.b.e	ENSGT00950000182888.b.k.a	ENSGT00500000044909.b	ENSGT00950000183174.A.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	ENSCARG00000005661	ENSCARG00000005668	ENSCARG00000005672	akt2l (ENSCARG00000005681)	ENSCARG00000005738	ENSCARG00000005810	triap1 (ENSCARG00000007646)	srsf9 (ENSCARG00000007654)	GAL3ST1 (ENSCARG00000007656)	epb41l4a (ENSCARG00000007680)	apc (ENSCARG00000007827)	ENSCARG00000007977	ENSCARG00000007979	dyrk1aa (ENSCARG00000007989)	ENSCARG00000008091 #15	ckmt2a (ENSCARG00000010143) #22	ENSCARG00000010216	psmg1 (ENSCARG00000010226)	mpzl1l (ENSCARG00000010238)	ENSCARG00000010247	ENSCARG00000010249	opn4xa (ENSCARG00000010254)	gdnfa (ENSCARG00000010265)	WDR70 (ENSCARG00000010290)	ENSCARG00000001935	pdlim5b (ENSCARG00000001974)	ENSCARG00000002054	ENSCARG00000002059	ENSCARG00000002064	ENSCARG00000002083	ANKLE2 (ENSCARG00000002132)
Goldfish	MODERN SPECIES	1	ENSCARG00000002724	ENSCARG00000002783	pdxp (ENSCARG00000002786)	mier3a (ENSCARG00000002801)	grk5 (ENSCARG00000002871)	ash2l (ENSCARG00000003024)	pnx (ENSCARG00000003377)	aebp1a (ENSCARG00000003390)	ENSCARG00000003429	ENSCARG00000003437	ERAP1 (ENSCARG00000003511)	oclna (ENSCARG00000005457)	MARVELD2 (ENSCARG00000005470)	ENSCARG00000005515 #15	ENSCARG00000006393	ckmt2a (ENSCARG00000006398) #22	ENSCARG00000006430	hic2 (ENSCARG00000006455)	pi4kaa (ENSCARG00000006476)	slc25a1b (ENSCARG00000006735)	zgc:56235 (ENSCARG00000006765)	tor4aa (ENSCARG00000006796)	brap (ENSCARG00000006813)	NAA25 (ENSCARG00000007233)	tmed2 (ENSCARG00000007299)	ptpn11a (ENSCARG00000007329)	ENSCARG00000007663	TTC28 (ENSCARG00000008011)	pitpnb (ENSCARG00000008155)	MN1 (ENSCARG00000008194)	RAB3C (ENSCARG00000008204)
Cyprininae_a	ANCESTRAL SPECIES	61			ENSGT01030000234573.A.b.b.b.l.b	ENSGT00940000164321.d.a	ENSGT00390000010474.c	ENSGT00940000166967	ENSGT00940000158323.g	ENSGT00390000015164.eb	ENSGT00530000063672.b.g	ENSGT00940000159086.p	ENSGT00730000110989.c.a.a	ENSGT00940000155771.c.a	ENSGT00940000154290.b.a #15	ENSGT00390000012355.A.a.a.b.b #17	ENSGT00940000155679.d.g #21	ENSGT00950000182772.B.a.a.u.b #22	ENSGT00940000153654.bf.a.b	ENSGT00940000159978.q.b	ENSGT00550000074798.a.a.e	ENSGT00550000074856.d	ENSGT00950000182869.e.b.g.b.f	ENSGT00950000182888.b.k.b	ENSGT00500000044909.a	ENSGT00950000183174.A.a	ENSGT00550000074969.a	ENSGT00940000155143.b	ENSGT00940000153876.B.g	ENSGT00940000157468.b.q	ENSGT00940000165179.a.a	ENSGT00940000156428.dd	ENSGT00940000155101.e.c
Common carp reference	MODERN SPECIES	24	ENSCCRG00000059351	pdxp (ENSCCRG00000059829)	mier3a (ENSCCRG00000034338)	grk5 (ENSCCRG00000001639)	ash2l (ENSCCRG00000001769)	pnx (ENSCCRG00000055746)	aebp1a (ENSCCRG00000040679)	ykt6 (ENSCCRG00000057784)	ENSCCRG00000010441	ENSCCRG00000040619	oclna (ENSCCRG00000005581)	ENSCCRG00000082673	ENSCCRG00000047314 #15	ENSCCRG00000078808 #17	ENSCCRG00000013155 #21	ckmt2a (ENSCCRG00000013146) #22	ENSCCRG00000013141	hic2 (ENSCCRG00000064601)	pi4kaa (ENSCCRG00000068596)	slc25a1b (ENSCCRG00000052291)	zgc:56235 (ENSCCRG00000015764)	tor4aa (ENSCCRG00000067562)	brap (ENSCCRG00000079383)	ENSCCRG00000041649	ddx55 (ENSCCRG00000041874)	ptpn11a (ENSCCRG00000008592)	ENSCCRG00000059018	pla2g3 (ENSCCRG00000008621)	TTC28 (ENSCCRG00000070663)	pitpnb (ENSCCRG00000077431)	MN1 (ENSCCRG00000061033)
Golden-line barbel	MODERN SPECIES	321							ENSSGRG00000049751	ykt6 (ENSSGRG00000049752)	ENSSGRG00000049788	ERAP1 (ENSSGRG00000049796)	oclna (ENSSGRG00000050060)	MARVELD2 (ENSSGRG00000050067)	ENSSGRG00000050071 #15	ANKRD34B (ENSSGRG00000050121) #17	RASGRF2 (ENSSGRG00000050132) #21	ckmt2a (ENSSGRG00000050176) #22	ube2l3a (ENSSGRG00000050233)	hic2 (ENSSGRG00000050237)	pi4kaa (ENSSGRG00000050249)	slc25a1b (ENSSGRG00000050530)	zgc:56235 (ENSSGRG00000050531)	brap (ENSSGRG00000050543)	NAA25 (ENSSGRG00000050553)	ddx55 (ENSSGRG00000051006)	tmed2 (ENSSGRG00000051019)	ptpn11a (ENSSGRG00000051039)	ENSSGRG00000051182	pla2g3 (ENSSGRG00000051199)	TTC28 (ENSSGRG00000051202)	pitpnb (ENSSGRG00000051225)	MN1 (ENSSGRG00000051246)
Cyprininae	ANCESTRAL SPECIES	21				ENSGT00940000155123.a.b	ENSGT00940000155305.a.a	ENSGT00940000154742.b.d	ENSGT00940000159721.g.a	ENSGT00510000048902.a.e.b	ENSGT00940000158049.d	ENSGT00940000160570.m	ENSGT00940000160404.c	ENSGT00390000000560	ENSGT00390000014658.h	ENSGT00550000074949.j #19	ENSGT00940000155679.c.m #21	ENSGT00950000182772.B.a.a.v #22	ENSGT00940000159952.a.a.b	ENSGT00990000203589.b.a.b	ENSGT00940000156354.o.b #7	ENSGT00940000156640.c #8	ENSGT00940000159696.b #9	ENSGT00950000182919.B.b.c #11	ENSGT00940000155227.b.b #12	ENSGT01030000234623.a.b.a.g #13	ENSGT00940000155179.o	ENSGT00940000158784.n	ENSGT00940000157902.e	ENSGT00940000162653.c.b	ENSGT01090000260661	ENSGT00950000183112.b.a.b.g	ENSGT00940000161008.e.c
Goldfish	MODERN SPECIES	23	ncl (ENSCARG00000019409)	nppc (ENSCARG00000019445)	ENSCARG00000019451	hmgcra (ENSCARG00000019498)	ENSCARG00000019773	gcnt4a (ENSCARG00000019782)	ENSCARG00000019786	pomt1 (ENSCARG00000019822)	ENSCARG00000020649	CARD9 (ENSCARG00000020667)	snapc4 (ENSCARG00000020703)	ENSCARG00000020782	ubac1 (ENSCARG00000020791)	msh3 (ENSCARG00000020872) #19	rasgrf2b (ENSCARG00000022224) #21	ckmt2b (ENSCARG00000025138) #22	otpb (ENSCARG00000025268)	lhfpl2b (ENSCARG00000025299)	homer1b (ENSCARG00000025319) #7	tent2 (ENSCARG00000025362) #8	cmya5 (ENSCARG00000025439) #9	mtx3 (ENSCARG00000025456) #11	thbs4a (ENSCARG00000025660) #12	serinc5 (ENSCARG00000028222) #13	ENSCARG00000028239	cdk7 (ENSCARG00000028255)	SETBP1 (ENSCARG00000028429)	lnpep (ENSCARG00000028489)	erap2 (ENSCARG00000029055)	rgmb (ENSCARG00000029419)	MYORG (ENSCARG00000029438)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00390000016407.b	ENSGT00390000018619.m	ENSGT00940000158982	ENSGT00940000155123.a.a	ENSGT00940000155305.a.b	ENSGT00940000154742.b.c	ENSGT00940000159721.g.b	ENSGT00510000048902.a.e.a	ENSGT00940000158049.c	ENSGT00940000153246.b	ENSGT00940000160570.n	ENSGT00940000160404.c.b	ENSGT00390000014658.h	ENSGT00550000074949.j #19	ENSGT00940000155679.c.m #21	ENSGT00950000182772.B.a.a.v #22	ENSGT00940000159952.a.a.b	ENSGT00990000203589.b.a.b	ENSGT00940000156354.o.b #7	ENSGT00940000156640.c #8	ENSGT00940000159696.b #9	ENSGT00950000182919.B.b.c #11	ENSGT00940000155227.b.b #12	ENSGT01030000234623.a.b.a.g #13	ENSGT00940000155179.o	ENSGT00940000158784.n	ENSGT00940000157902.e	ENSGT00940000162653.c.b	ENSGT01090000260661	ENSGT00950000183112.b.a.b.g	ENSGT00940000161008.e.c
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	92	SKIC3 (ENSSGRG00000021229)	nol6 (ENSSGRG00000021193)	ENSSGRG00000021191	cert1a (ENSSGRG00000020993)	hmgcra (ENSSGRG00000020371)	ankrd31 (ENSSGRG00000020359)	gcnt4a (ENSSGRG00000020358)	ENSSGRG00000020356	pomt1 (ENSSGRG00000020354)	CARD9 (ENSSGRG00000020350)	snapc4 (ENSSGRG00000020349)	entr1 (ENSSGRG00000020344)	ubac1 (ENSSGRG00000020343)	msh3 (ENSSGRG00000020282) #19	rasgrf2b (ENSSGRG00000019303) #21	ckmt2b (ENSSGRG00000019158) #22	otpb (ENSSGRG00000019154)	lhfpl2b (ENSSGRG00000019150)	homer1b (ENSSGRG00000019147) #7	tent2 (ENSSGRG00000018905) #8	cmya5 (ENSSGRG00000018900) #9	mtx3 (ENSSGRG00000018842) #11	thbs4a (ENSSGRG00000018768) #12	serinc5 (ENSSGRG00000018653) #13	cdk7 (ENSSGRG00000018413)	SETBP1 (ENSSGRG00000018404)	lnpep (ENSSGRG00000018341)	ENSSGRG00000018329	rgmb (ENSSGRG00000018328)	mamdc2a (ENSSGRG00000018327)	ptar1 (ENSSGRG00000018322)
Golden-line barbel	MODERN SPECIES	534	nol6 (ENSSGRG00000019187)	arsk (ENSSGRG00000019223)	cert1a (ENSSGRG00000019264)	hmgcra (ENSSGRG00000020504)	ankrd31 (ENSSGRG00000021964)	ENSSGRG00000021969	gcnt4a (ENSSGRG00000021970)	pomt1 (ENSSGRG00000021981)	zgc:194398 (ENSSGRG00000022078)	CARD9 (ENSSGRG00000022079)	snapc4 (ENSSGRG00000022081)	entr1 (ENSSGRG00000022087)	ubac1 (ENSSGRG00000022090)	ENSSGRG00000022227 #19	rasgrf2b (ENSSGRG00000022237) #21	ckmt2b (ENSSGRG00000022627) #22	otpb (ENSSGRG00000022628)	lhfpl2b (ENSSGRG00000022631)	homer1b (ENSSGRG00000022634) #7	tent2 (ENSSGRG00000022651) #8	cmya5 (ENSSGRG00000022709) #9	thbs4a (ENSSGRG00000022728) #12	serinc5 (ENSSGRG00000022809) #13	cdk7 (ENSSGRG00000022810)	SETBP1 (ENSSGRG00000022811)	slc14a2 (ENSSGRG00000022812)	lnpep (ENSSGRG00000022813)	erap2 (ENSSGRG00000022820)	rgmb (ENSSGRG00000022861)	MYORG (ENSSGRG00000022863)	mamdc2a (ENSSGRG00000022864)
Common carp reference	MODERN SPECIES	15	FAM81B (ENSCCRG00000054081)	SKIC3 (ENSCCRG00000028424)	nol6 (ENSCCRG00000024304)	arsk (ENSCCRG00000024209)	cert1a (ENSCCRG00000023916)	hmgcra (ENSCCRG00000023887)	ENSCCRG00000057397	ENSCCRG00000057955	pomt1 (ENSCCRG00000054610)	ENSCCRG00000060125	ENSCCRG00000031341	snapc4 (ENSCCRG00000080322)	ubac1 (ENSCCRG00000078928)	msh3 (ENSCCRG00000065142) #19	rasgrf2b (ENSCCRG00000081778) #21	ckmt2b (ENSCCRG00000042333) #22	otpb (ENSCCRG00000042303)	lhfpl2b (ENSCCRG00000030356)	homer1b (ENSCCRG00000067618) #7	tent2 (ENSCCRG00000023884) #8	mtx3 (ENSCCRG00000057339) #11	cmya5 (ENSCCRG00000059932) #9	thbs4a (ENSCCRG00000033545) #12	serinc5 (ENSCCRG00000066854) #13	cdk7 (ENSCCRG00000032487)	ENSCCRG00000043063	lnpep (ENSCCRG00000033617)	erap2 (ENSCCRG00000030374)	ENSCCRG00000055078	rgmb (ENSCCRG00000054301)	ENSCCRG00000076524
Osteoglossiformes	ANCESTRAL SPECIES	424															ENSGT00940000155679.d #21	ENSGT00950000182772.B.a.a #22	ENSGT00950000183041.C #23	ENSGT00940000160328 #24	ENSGT00950000183049.E.b ##25	ENSGT00390000000924 #26	ENSGT00940000155186.b #33	ENSGT00940000166544	ENSGT00940000156102.r #35
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	110															RASGRF2 (ENSPKIG00000006766) #21	ckmt2a (ENSPKIG00000006702) #22	zcchc9 (ENSPKIG00000006659) #23	ACOT12 (ENSPKIG00000006605) #24	ENSPKIG00000006542 ##25	atg10 (ENSPKIG00000006450) #26	tmem167a (ENSPKIG00000006381) #33	xrcc4 (ENSPKIG00000006359)	ENSPKIG00000006348 #35	ENSPKIG00000006325 #35	HAPLN1 (ENSPKIG00000006269) #37	EDIL3 (ENSPKIG00000006122)	ENSPKIG00000006055	RASA1 (ENSPKIG00000005956)	tmem161b (ENSPKIG00000005884)	mef2ca (ENSPKIG00000005809)	cetn3 (ENSPKIG00000005747)
P. kingsleyae	MODERN SPECIES	202	ENSPKIG00000015023	RUSC2 (ENSPKIG00000014978)	ENSPKIG00000014900	ENSPKIG00000014812	ENSPKIG00000014776	naaladl1 (ENSPKIG00000014715)	gtf2h2 (ENSPKIG00000014619)	oclnb (ENSPKIG00000014568)	marveld2b (ENSPKIG00000014545)	zgc:86811 (ENSPKIG00000014514)	ccdc125 (ENSPKIG00000014452)	fam151b (ENSPKIG00000014403) #16	ANKRD34B (ENSPKIG00000014386) #17	msh3 (ENSPKIG00000014339) #19	rasgrf2b (ENSPKIG00000014205) #21	ckmt2b (ENSPKIG00000014137) #22	ENSPKIG00000014072 ##25	ENSPKIG00000014040	TMEM167A (ENSPKIG00000013964) #33	ENSPKIG00000013920 #35	ENSPKIG00000013902 #35	HAPLN1 (ENSPKIG00000013849) #37	EDIL3 (ENSPKIG00000013774)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	21			DNAI1 (ENSSFOG00015012534)	fam166b (ENSSFOG00015012461)	RUSC2 (ENSSFOG00015012406)	ENSSFOG00015012358	UNC13B (ENSSFOG00015012316)	stoml2 (ENSSFOG00015011937)	PIGO (ENSSFOG00015033071)	ERAP1 (ENSSFOG00015011891)	oclna (ENSSFOG00015011809)	MARVELD2 (ENSSFOG00015011712)	rad17 (ENSSFOG00015011680)	ENSSFOG00015011648 #15	dhfr (ENSSFOG00015025319)	ckmt2a (ENSSFOG00015011609) #22	zcchc9 (ENSSFOG00015011594) #23	atg10 (ENSSFOG00015027963) #26	tmem167a (ENSSFOG00015011502) #33	xrcc4 (ENSSFOG00015011484)	HAPLN1 (ENSSFOG00015011424) #37	ENSSFOG00015031680	EDIL3 (ENSSFOG00015011393)	RASA1 (ENSSFOG00015011306)	tmem161b (ENSSFOG00015011239)	mef2ca (ENSSFOG00015011194)	ENSSFOG00015025437	ENSSFOG00015029012	ENSSFOG00015011118	nr2f1a (ENSSFOG00015028103)	MCTP1 (ENSSFOG00015011025)
Asian bonytongue	MODERN SPECIES	8	ENSSFOG00015010334	ENSSFOG00015010290	ENSSFOG00015031620	naaladl1 (ENSSFOG00015010218)	erap1b (ENSSFOG00015010153)	gtf2h2 (ENSSFOG00015010024)	oclnb (ENSSFOG00015009975)	marveld2b (ENSSFOG00015009959)	zgc:86811 (ENSSFOG00015009920)	ccdc125 (ENSSFOG00015009880)	fam151b (ENSSFOG00015009848) #16	ankrd34bb (ENSSFOG00015009825) #17	dhfr (ENSSFOG00015009724)	msh3 (ENSSFOG00015009599) #19	rasgrf2b (ENSSFOG00015009458) #21	ckmt2b (ENSSFOG00015009404) #22	ENSSFOG00015009357 ##25	ENSSFOG00015009338	ENSSFOG00015030000	TMEM167A (ENSSFOG00015030289) #33	ENSSFOG00015031558 #35	HAPLN1 (ENSSFOG00015017192) #37	EDIL3 (ENSSFOG00015017142)	cox7c (ENSSFOG00015017124)	ENSSFOG00015017108	RASA1 (ENSSFOG00015017031)	ccnh (ENSSFOG00015017003)	mef2cb (ENSSFOG00015025515)	mblac2 (ENSSFOG00015016878)	ENSSFOG00015016864	adgrv1 (ENSSFOG00015016679)
Reedfish	MODERN SPECIES	15	DDRGK1 (ENSECRG00000006351)	ENSECRG00000006361	ENSECRG00000006371	UBOX5 (ENSECRG00000006381)	ENSECRG00000006435	ENSECRG00000006463	ENSECRG00000006472	ENSECRG00000006489	erap1b (ENSECRG00000006537)	gtf2h2 (ENSECRG00000006628)	fam151b (ENSECRG00000006644) #16	ankrd34bb (ENSECRG00000006654) #17	dhfr (ENSECRG00000006658)	msh3 (ENSECRG00000006670) #19	rasgrf2b (ENSECRG00000006694) #21	ckmt2a (ENSECRG00000006733) #22	zcchc9 (ENSECRG00000006748) #23	ACOT12 (ENSECRG00000006759) #24	ENSECRG00000006780 ##25	atg10 (ENSECRG00000006810) #26	ENSECRG00000006832	xrcc4 (ENSECRG00000006852)	ENSECRG00000006901 #35	HAPLN1 (ENSECRG00000006997) #37	EDIL3 (ENSECRG00000007012)	cox7c (ENSECRG00000007032)	RASA1 (ENSECRG00000007053)	ccnh (ENSECRG00000007084)	tmem161b (ENSECRG00000007114)	ENSECRG00000007132	mef2cb (ENSECRG00000007156)
Gnathostomata	ANCESTRAL SPECIES	649												ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22
Elephant shark	MODERN SPECIES	1490	CHRNA3 (ENSCMIG00000008111)	ENSCMIG00000008145	SHF (ENSCMIG00000008160)	ENSCMIG00000008166	igf1ra (ENSCMIG00000008201)	ENSCMIG00000008413	ENSCMIG00000008415	ENSCMIG00000008416	ENSCMIG00000008417	CCIN (ENSCMIG00000008418)	tubgcp4 (ENSCMIG00000008436)	ENSCMIG00000008514	ENSCMIG00000008521	MAP1A (ENSCMIG00000008528)	PPIP5K1 (ENSCMIG00000008634)	ckmt1b (ENSCMIG00000009047) ##22	ENSCMIG00000009086	ENSCMIG00000009092	ENSCMIG00000009097	prc1a (ENSCMIG00000009167)	vps33b (ENSCMIG00000009287)	hddc3 (ENSCMIG00000009319)	ENSCMIG00000009320	TTLL13 (ENSCMIG00000009323)	cib1 (ENSCMIG00000009327)	gdpgp1 (ENSCMIG00000009331)	ENSCMIG00000009332	unc45a (ENSCMIG00000009445)	MAN2A2 (ENSCMIG00000009751)	fes (ENSCMIG00000009820)	furina (ENSCMIG00000009871)
Euteleostomi	ANCESTRAL SPECIES	111	ENSGT00940000157220	ENSGT00690000102225	ENSGT00390000008502	ENSGT01030000234623.a.b.b ##13	ENSGT00940000160456	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000018319.a.a	ENSGT00390000016136	ENSGT00960000190090	ENSGT00940000156677	ENSGT00390000011891	ENSGT01020000230648	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00910000144338	ENSGT00940000155425
Actinopterygii	ANCESTRAL SPECIES	122	ENSGT00390000016068	ENSGT00390000005224	ENSGT00940000177011	ENSGT00940000159749	ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000164520	ENSGT00940000159320	ENSGT01030000234638.b.b.c.a	ENSGT00940000158881	ENSGT00940000157220	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000160962	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781
Reedfish	MODERN SPECIES	41											ENSECRG00000022261	fes (ENSECRG00000022250)	ENSECRG00000022242	furina (ENSECRG00000022232)	ENSECRG00000022213	ckmt1 (ENSECRG00000022197) ##22	ENSECRG00000022148	SLC39A2 (ENSECRG00000022128)	pdia3 (ENSECRG00000022113)	ENSECRG00000022100	RLBP1 (ENSECRG00000022095)
Neopterygii	ANCESTRAL SPECIES	11					ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000164520	ENSGT00940000159320	ENSGT01030000234638.b.b.c.a	ENSGT00940000158881	ENSGT00940000157220	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00940000160962	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526	ENSGT00950000182902.b.a	ENSGT00940000156049	ENSGT00940000159628	ENSGT00940000155971	ENSGT00390000009048.a.a	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT01030000235224
Spotted gar	MODERN SPECIES	669	rpp25a (ENSLOCG00000015144)	ENSLOCG00000015141	PARP6 (ENSLOCG00000015133)	pkma (ENSLOCG00000015130)	dhdh.1 (ENSLOCG00000015126)	ttll6 (ENSLOCG00000015123)	rhcgb (ENSLOCG00000015114)	gdpgp1 (ENSLOCG00000017961)	cib1 (ENSLOCG00000015112)	ENSLOCG00000015109	unc45a (ENSLOCG00000015105)	MAN2A2 (ENSLOCG00000015097)	fes (ENSLOCG00000015089)	furina (ENSLOCG00000015082)	ENSLOCG00000015077	ckmt1 (ENSLOCG00000015070) ##22	ENSLOCG00000015068	snupn (ENSLOCG00000015064)	PTPN9 (ENSLOCG00000015058)	sin3aa (ENSLOCG00000015051)	crabp1b (ENSLOCG00000015050)	skic8 (ENSLOCG00000015047)	slc25a44b (ENSLOCG00000015045)	IREB2 (ENSLOCG00000015029)	psma4 (ENSLOCG00000015026)	oaz2b (ENSLOCG00000015021)	rbpms2b (ENSLOCG00000015018)	AP3B2 (ENSLOCG00000015010)	cpeb1b (ENSLOCG00000015009)	ENSLOCG00000015007	snx1a (ENSLOCG00000015004)
Osteoglossocephalai	ANCESTRAL SPECIES	10	ENSGT00390000011116	ENSGT00940000155200	ENSGT00390000001368	ENSGT00390000005855	ENSGT00390000000453	ENSGT00950000182844.b.b.b	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000164520	ENSGT01030000237590	ENSGT00940000159320	ENSGT01030000234638.b.b.c.a	ENSGT00940000158881	ENSGT00940000157220	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000160962	ENSGT00950000182957.a.b	ENSGT00390000003062	ENSGT00940000165521.b	ENSGT00940000165692	ENSGT00940000164368.B	ENSGT00940000156178.B	ENSGT00390000003453.b.b	ENSGT00940000154489.B.a	ENSGT00530000063948.a	ENSGT00940000159107.i	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425
Osteoglossiformes	ANCESTRAL SPECIES	13	ENSGT00530000063712.a.a.o.a	ENSGT00530000063712.a.a.o.b	ENSGT00950000182940.b.a.a.g.a	ENSGT00940000154146.b.a	ENSGT00950000182983.B.b.g	ENSGT00940000160936.e	ENSGT00940000155645.h	ENSGT00390000015400	ENSGT00940000159749	ENSGT00940000177011	ENSGT00950000182844.b.b.b.c	ENSGT00940000158927	ENSGT01030000234638.b.b.c.a	ENSGT00940000158881	ENSGT00940000157220.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669.d	ENSGT00940000155425.pb.b	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c.b	ENSGT00940000156049.b	ENSGT00940000159628	ENSGT00940000155971.d.a	ENSGT00390000009048.a.a.e	ENSGT00940000158701.a.g	ENSGT00390000011891	ENSGT00940000156677	ENSGT00940000158376	ENSGT00390000018319.a.a.a.b.a
P. kingsleyae	MODERN SPECIES	14	ENSPKIG00000013786	ENSPKIG00000013819	ENSPKIG00000013917	KLHL25 (ENSPKIG00000014041)	AGBL1 (ENSPKIG00000014098)	NTRK3 (ENSPKIG00000014190)	mrpl46 (ENSPKIG00000014232)	kif7 (ENSPKIG00000014300)	ENSPKIG00000014399	rhcga (ENSPKIG00000014418)	ENSPKIG00000014449	cib1 (ENSPKIG00000014465)	MAN2A2 (ENSPKIG00000014535)	fes (ENSPKIG00000014722)	FURIN (ENSPKIG00000014806)	ckmt1 (ENSPKIG00000014895) ##22	STRC (ENSPKIG00000014961)	slc39a1 (ENSPKIG00000015087)	pdia3 (ENSPKIG00000015125)	ENSPKIG00000015180	rlbp1b (ENSPKIG00000015226)	ABHD2 (ENSPKIG00000015304)	mfge8a (ENSPKIG00000015338)	hapln3 (ENSPKIG00000015365)	ACAN (ENSPKIG00000015394)	PPIP5K1 (ENSPKIG00000015535)	ENSPKIG00000015839	MAP1A (ENSPKIG00000015873)	tp53bp1 (ENSPKIG00000015980)	tubgcp4 (ENSPKIG00000016146)	cdkn2aip (ENSPKIG00000016219)
Asian bonytongue	MODERN SPECIES	2	mespaa (ENSSFOG00015019242)	mespba (ENSSFOG00015019234)	ENSSFOG00015019172	ENSSFOG00015019161	ENSSFOG00015019124	KLHL25 (ENSSFOG00015019111)	AGBL1 (ENSSFOG00015019065)	NTRK3 (ENSSFOG00015019029)	mrpl46 (ENSSFOG00015028871)	kif7 (ENSSFOG00015018916)	rhcga (ENSSFOG00015018883)	cib1 (ENSSFOG00015018869)	MAN2A2 (ENSSFOG00015018761)	fes (ENSSFOG00015018721)	FURIN (ENSSFOG00015018595)	ckmt1 (ENSSFOG00015018546) ##22	ENSSFOG00015018499	ENSSFOG00015024917	slc39a1 (ENSSFOG00015018485)	ENSSFOG00015018481	rlbp1b (ENSSFOG00015018463)	ABHD2 (ENSSFOG00015018439)	mfge8a (ENSSFOG00015018364)	hapln3 (ENSSFOG00015018337)	PPIP5K1 (ENSSFOG00015018209)	MAP1A (ENSSFOG00015018175)	tp53bp1 (ENSSFOG00015018026)	tubgcp4 (ENSSFOG00015017947)	cdkn2aip (ENSSFOG00015027291)	ENSSFOG00015017923	ENSSFOG00015029180
Clupeocephala	ANCESTRAL SPECIES	311											ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h	ENSGT00940000158701.b	ENSGT01020000230648
Otomorpha	ANCESTRAL SPECIES	278										ENSGT00530000063981.b.c	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h	ENSGT00940000158701.b	ENSGT00390000018319.a.a.a.b.d.b	ENSGT00940000164795	ENSGT00390000010463.b	ENSGT00940000157398.i.b	ENSGT00940000164439
Otophysi	ANCESTRAL SPECIES	463																ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00570000079224	ENSGT00390000002390.b.e
Characiphysae	ANCESTRAL SPECIES	7	ENSGT00940000158553.b.a	ENSGT00390000001810.a	ENSGT00940000164439	ENSGT00940000157398.i.b	ENSGT00390000010463.b	ENSGT00940000164795	ENSGT00390000018319.a.a.a.b.d.b	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000159631	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00940000156334.a.a	ENSGT00940000159624	ENSGT00390000009327	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b.c
Channel catfish	MODERN SPECIES	27	sycp3 (ENSIPUG00000003821)	si:ch211-59o9.10 (ENSIPUG00000003802)	nedd1 (ENSIPUG00000003753)	sh3gl3 (ENSIPUG00000003694)	ENSIPUG00000003664	c8h15orf40 (ENSIPUG00000003652)	cartpt (ENSIPUG00000003642)	ENSIPUG00000003573	ENSIPUG00000003478	ENSIPUG00000003438	hapln3 (ENSIPUG00000003421)	Edil3 (ENSIPUG00000003390)	abhd2b (ENSIPUG00000003365)	RLBP1 (ENSIPUG00000003324)	ENSIPUG00000003320	ckmt1 (ENSIPUG00000003307) ##22	PDIA3 (ENSIPUG00000003265)	NUDT7 (ENSIPUG00000003256)	TMED6 (ENSIPUG00000003251)	ENSIPUG00000003236	mlkl (ENSIPUG00000003225)	ENSIPUG00000003210	hic2 (ENSIPUG00000003207)	ADAM19 (ENSIPUG00000003200)	ENSIPUG00000003188	ENSIPUG00000003177	slc30a9 (ENSIPUG00000003121)	GRXCR1 (ENSIPUG00000003103)	atp8a1 (ENSIPUG00000002963)	shisa3 (ENSIPUG00000002937)	bend4 (ENSIPUG00000002930)
Characiphysae_b	ANCESTRAL SPECIES	7	ENSGT00940000158553.b.a	ENSGT00390000001810.a	ENSGT00940000164439	ENSGT00940000157398.i.b	ENSGT00390000010463.b	ENSGT00940000164795	ENSGT00390000018319.a.a.a.b.d.b	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000159631	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00940000156334.a.a	ENSGT00940000159624	ENSGT00390000009327	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b.c
Electric eel	MODERN SPECIES	429														rlbp1b (ENSEEEG00000021660)	ENSEEEG00000021661	ckmt1 (ENSEEEG00000021672) ##22	pdia3 (ENSEEEG00000021712)	ENSEEEG00000021746	TMED6 (ENSEEEG00000021747)	TMED6 (ENSEEEG00000021748)	ENSEEEG00000021751	hic1l (ENSEEEG00000021755)	ADAM19 (ENSEEEG00000021757)	ENSEEEG00000021777	slc30a9 (ENSEEEG00000021791)	GRXCR1 (ENSEEEG00000021926)	ATP8A1 (ENSEEEG00000021982)	shisa3 (ENSEEEG00000022582)	BEND4 (ENSEEEG00000022583)	ENSEEEG00000022586	ENSEEEG00000022589
Characoidei	ANCESTRAL SPECIES	2	ENSGT00940000158553.b.a	ENSGT00390000001810.a	ENSGT00940000164439	ENSGT00940000157398.i.b	ENSGT00390000010463.b	ENSGT00940000164795	ENSGT00390000018319.a.a.a.b.d.b	ENSGT00940000158701.b	ENSGT00390000009048.a.a.h	ENSGT00940000155971.d.a.b	ENSGT00940000159628.d	ENSGT00940000156049.a	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000164526.b	ENSGT00940000160781	ENSGT00950000182772.B.a.b ##22	ENSGT00940000159631	ENSGT00940000156519.p	ENSGT00390000010961.d	ENSGT00390000010961.c	ENSGT00390000016453	ENSGT00940000156334.a.a	ENSGT00940000159624	ENSGT00390000009327	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963	ENSGT00940000158783.a.b.c	ENSGT01030000234641.a.a.a
Red-bellied piranha	MODERN SPECIES	14	si:ch211-59o9.10 (ENSPNAG00000021419)	lyrm5b (ENSPNAG00000021436)	nedd1 (ENSPNAG00000021510)	sh3gl3b (ENSPNAG00000021567)	ENSPNAG00000021683	zgc:193812 (ENSPNAG00000021711)	cart2 (ENSPNAG00000021749)	ENSPNAG00000022016	PPIP5K1 (ENSPNAG00000022113)	ACAN (ENSPNAG00000022144)	hapln3 (ENSPNAG00000022167)	mfge8b (ENSPNAG00000003713)	abhd2b (ENSPNAG00000022236)	rlbp1b (ENSPNAG00000022288)	ENSPNAG00000022301	ckmt1 (ENSPNAG00000022345) ##22	pdia3 (ENSPNAG00000022399)	ENSPNAG00000022421	NUDT7 (ENSPNAG00000022450)	ZDHHC7 (ENSPNAG00000022478)	TMED6 (ENSPNAG00000022504)	ENSPNAG00000022521	ENSPNAG00000022541	hic1l (ENSPNAG00000022553)	ADAM19 (ENSPNAG00000022567)	zgc:195212 (ENSPNAG00000022650)	slc30a9 (ENSPNAG00000003729)	GRXCR1 (ENSPNAG00000022693)	atp8a1 (ENSPNAG00000003739)	shisa3 (ENSPNAG00000022830)	BEND4 (ENSPNAG00000022834)
Mexicana tetra	MODERN SPECIES	16	si:ch211-59o9.10 (ENSAMXG00000031339)	nedd1 (ENSAMXG00000009459)	sh3gl3b (ENSAMXG00000009473)	ENSAMXG00000009485	zgc:193812 (ENSAMXG00000036518)	cart2 (ENSAMXG00000032334)	ENSAMXG00000029484	PPIP5K1 (ENSAMXG00000013519)	ENSAMXG00000039144	ENSAMXG00000042874	hapln3 (ENSAMXG00000013617)	mfge8b (ENSAMXG00000013623)	abhd2b (ENSAMXG00000013636)	rlbp1b (ENSAMXG00000013651)	ENSAMXG00000041093	ckmt1 (ENSAMXG00000013684) ##22	pdia3 (ENSAMXG00000013689)	ZDHHC7 (ENSAMXG00000013736)	ENSAMXG00000035222	ENSAMXG00000035386	ENSAMXG00000039970	ENSAMXG00000013769	hic1l (ENSAMXG00000030914)	ENSAMXG00000035854	ADAM19 (ENSAMXG00000013794)	ENSAMXG00000043957	slc30a9 (ENSAMXG00000013803)	GRXCR1 (ENSAMXG00000013815)	atp8a1 (ENSAMXG00000013828)	shisa3 (ENSAMXG00000029444)	ENSAMXG00000010458
Cyprinoidei	ANCESTRAL SPECIES	53	ENSGT00530000063981.a.h	ENSGT00390000008766	ENSGT00940000155474.p.a	ENSGT00650000093320.a.a.e.b	ENSGT00940000157946.f	ENSGT00390000007283.b	ENSGT00550000075044	ENSGT00940000160513.b	ENSGT00940000164174	ENSGT00940000155659.h	ENSGT00390000010852	ENSGT00390000005941.d	ENSGT00390000010382	ENSGT00940000157682.B.b	ENSGT00950000182981.b.f.a.d	ENSGT00950000182772.B.a.b ##22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	152	ENSGT00940000159857.a.b.a	ENSGT00530000063981.a.h.a	ENSGT00390000008766	ENSGT00940000155474.p.a.g	ENSGT00650000093320.a.a.e.b.c.a	ENSGT00940000157946.f.b	ENSGT00390000007283.b.b	ENSGT00550000075044.a	ENSGT00940000160513.b.e	ENSGT00940000155659.h.a	ENSGT00390000010852.p	ENSGT00390000005941.d.a	ENSGT00390000010382.f	ENSGT00940000157682.B.b	ENSGT00950000182981.b.f.a.d.b	ENSGT00950000182772.B.a.b.a ##22	ENSGT00910000144338	ENSGT00940000155425.`b.b	ENSGT00390000005222.e	ENSGT00390000016821	ENSGT00940000157226.b	ENSGT00940000154860.a.b.a	ENSGT00390000010991.s.a.a	ENSGT00530000063981.b.c.a
Goldfish	MODERN SPECIES	17	fbxl14a (ENSCARG00000045746)	PRR5 (ENSCARG00000045764)	rad52 (ENSCARG00000045888)	ENSCARG00000045948	erc1a (ENSCARG00000046357)	ENSCARG00000053271	TMEM60 (ENSCARG00000053276)	immp2l (ENSCARG00000053279)	LRRN3 (ENSCARG00000053306)	DOCK4 (ENSCARG00000053371)	znf277 (ENSCARG00000054399)	TMEM168 (ENSCARG00000054607)	bmt2 (ENSCARG00000054616)	ENSCARG00000054647	ahcyl2a (ENSCARG00000054667)	ckmt1 (ENSCARG00000054749) ##22	ENSCARG00000054882	pdia3 (ENSCARG00000054907)	ENSCARG00000055011	si:ch1073-281m9.1 (ENSCARG00000055146)	alkbh3 (ENSCARG00000055154)	hsd17b12a (ENSCARG00000055182)	api5 (ENSCARG00000055543)	PRR5L (ENSCARG00000055732)	ankrd39 (ENSCARG00000055818)	ENSCARG00000055832	kctd9a (ENSCARG00000055838)	npy8br (ENSCARG00000056067)	tbx16 (ENSCARG00000056085)	CABIN1 (ENSCARG00000056207)	ENSCARG00000059343
Cyprininae_a	ANCESTRAL SPECIES	16	ENSGT00940000159857.a.b.a	ENSGT00530000063981.a.h.a	ENSGT00390000008766	ENSGT00940000155474.p.a.g	ENSGT00650000093320.a.a.e.b.c.a	ENSGT00940000157946.f.b	ENSGT00390000007283.b.b	ENSGT00550000075044.a	ENSGT00940000160513.b.e	ENSGT00940000155659.h.a	ENSGT00390000010852.p	ENSGT00390000005941.d.a	ENSGT00390000010382.f	ENSGT00940000157682.B.b	ENSGT00950000182981.b.f.a.d.b	ENSGT00950000182772.B.a.b.a ##22	ENSGT00910000144338	ENSGT00940000155425.`b.b	ENSGT00390000005222.e	ENSGT00390000016821	ENSGT00940000157226.b	ENSGT00940000154860.a.b.a	ENSGT00390000010991.s.a.a	ENSGT00530000063981.b.c.a	ENSGT00940000160682.b.c.b.d.c	ENSGT00940000157236.j.g.a	ENSGT00940000153394.c.b.b.c.a.b.b	ENSGT00940000168446.a	ENSGT00940000162605.f.b	ENSGT00940000155357.a.b.d	ENSGT00940000165787.a.a.b.b.b
Golden-line barbel	MODERN SPECIES	519	gnaia (ENSSGRG00000025499)	ENSSGRG00000026850	fbxl14a (ENSSGRG00000026852)	PRR5 (ENSSGRG00000026854)	rad52 (ENSSGRG00000026867)	ENSSGRG00000026870	erc1a (ENSSGRG00000026871)	ENSSGRG00000026872	ENSSGRG00000026873	LRRN3 (ENSSGRG00000026874)	DOCK4 (ENSSGRG00000026990)	znf277 (ENSSGRG00000030556)	TMEM168 (ENSSGRG00000030662)	bmt2 (ENSSGRG00000030664)	ahcyl2a (ENSSGRG00000030667)	ckmt1 (ENSSGRG00000030681) ##22	ENSSGRG00000031064	pdia3 (ENSSGRG00000031068)	ENSSGRG00000031294
Common carp reference	MODERN SPECIES	37	fbxl14a (ENSCCRG00000077603)	ENSCCRG00000046665	rad52 (ENSCCRG00000046659)	ENSCCRG00000061996	erc1a (ENSCCRG00000046654)	ENSCCRG00000078023	ENSCCRG00000005344	ENSCCRG00000075889	immp2l (ENSCCRG00000065374)	ENSCCRG00000048735	DOCK4 (ENSCCRG00000048059)	TMEM168 (ENSCCRG00000048054)	bmt2 (ENSCCRG00000048053)	ENSCCRG00000048050	ahcyl2a (ENSCCRG00000058150)	ckmt1 (ENSCCRG00000046739) ##22	CATSPER2 (ENSCCRG00000037336)	pdia3 (ENSCCRG00000037077)	ENSCCRG00000072706	si:ch1073-281m9.1 (ENSCCRG00000076935)	alkbh3 (ENSCCRG00000078805)	hsd17b12a (ENSCCRG00000075578)	api5 (ENSCCRG00000038518)	ENSCCRG00000038995	ENSCCRG00000070005	brd1b (ENSCCRG00000038987)	ENSCCRG00000082344	ENSCCRG00000046866	ENSCCRG00000076596	ube2q2 (ENSCCRG00000021409)	ugt5a2 (ENSCCRG00000057739)
Cyprininae	ANCESTRAL SPECIES	229	ENSGT00940000153567.a.a.b.b.b.a	ENSGT00940000158940.b.a.a	ENSGT00940000159857.a.b.b	ENSGT00530000063981.a.h.b	ENSGT00940000155474.p.a.h	ENSGT00650000093320.a.a.e.b.c.b	ENSGT00940000157946.f.a	ENSGT00390000007283.b.a	ENSGT00940000160513.b.f	ENSGT00550000075044.b	ENSGT00940000155659.h.b	ENSGT00390000010852.o	ENSGT00390000005941.d.b	ENSGT00390000010382.e	ENSGT00950000182981.b.f.a.d.a	ENSGT00950000182772.B.a.b.b ##22	ENSGT00940000155425.`b.a	ENSGT00390000005222.f	ENSGT00940000157226.a	ENSGT00940000154860.a.b.b	ENSGT00390000010991.t	ENSGT00530000063981.b.c.b	ENSGT00940000160682.b.c.b.d	ENSGT00940000157236.j.g.b	ENSGT00940000153394.c.b.b.c.a.b.a	ENSGT00940000168446.b	ENSGT00940000162605.f.a	ENSGT00940000155357.a.b.c	ENSGT00940000165787.a.a.b.a	ENSGT00940000165787.a.a.a.a	ENSGT00940000165787.a.a.b.b.a.b
Goldfish	MODERN SPECIES	45	gnaia (ENSCARG00000036512)	CHRM2 (ENSCARG00000036541)	fbxl14a (ENSCARG00000036548)	PRR5 (ENSCARG00000036564)	ENSCARG00000036865	ENSCARG00000036885	erc1a (ENSCARG00000036941)	ENSCARG00000037518	TMEM60 (ENSCARG00000037551)	immp2l (ENSCARG00000037558)	DOCK4 (ENSCARG00000037932)	znf277 (ENSCARG00000042912)	TMEM168 (ENSCARG00000043476)	bmt2 (ENSCARG00000043493)	ahcyl2a (ENSCARG00000043524)	ckmt1 (ENSCARG00000043602) ##22	pdia3 (ENSCARG00000043749)	ENSCARG00000044163	si:ch1073-281m9.1 (ENSCARG00000044222)	alkbh3 (ENSCARG00000044226)	hsd17b12a (ENSCARG00000044235)	api5 (ENSCARG00000044315)	ENSCARG00000045060	TAFA5 (ENSCARG00000045078)	brd1b (ENSCARG00000045121)	gfPIM3 (ENSCARG00000045272)	ENSCARG00000045303	ube2q2 (ENSCARG00000045446)	ugt5a1 (ENSCARG00000045763)	ENSCARG00000045768	nptna (ENSCARG00000045772)
Cyprininae_a	ANCESTRAL SPECIES	46	ENSGT00940000153567.a.a.b.b.b.a	ENSGT00940000158940.b.a.a	ENSGT00940000159857.a.b.b	ENSGT00530000063981.a.h.b	ENSGT00940000155474.p.a.h	ENSGT00650000093320.a.a.e.b.c.b	ENSGT00940000157946.f.a	ENSGT00390000007283.b.a	ENSGT00940000160513.b.f	ENSGT00550000075044.b	ENSGT00940000155659.h.b	ENSGT00390000010852.o	ENSGT00390000005941.d.b	ENSGT00390000010382.e	ENSGT00950000182981.b.f.a.d.a	ENSGT00950000182772.B.a.b.b ##22	ENSGT00940000155425.`b.a	ENSGT00390000005222.f	ENSGT00940000157226.a	ENSGT00940000154860.a.b.b	ENSGT00390000010991.t	ENSGT00530000063981.b.c.b	ENSGT00940000160682.b.c.b.d.d	ENSGT00940000157236.j.g.b	ENSGT00940000153394.c.b.b.c.a.b.a	ENSGT00940000168446.b	ENSGT00940000162605.f.a	ENSGT00940000155357.a.b.c	ENSGT00940000165787.a.a.b.a	ENSGT00940000165787.a.a.a.a	ENSGT00940000165787.a.a.b.b.a.b
Common carp reference	MODERN SPECIES	33	fbxl14a (ENSCCRG00000065808)	ENSCCRG00000050754	ENSCCRG00000072726	rad52 (ENSCCRG00000050763)	ENSCCRG00000069645	erc1a (ENSCCRG00000006723)	ENSCCRG00000062839	ENSCCRG00000006740	LRRN3 (ENSCCRG00000006743)	ENSCCRG00000009867	DOCK4 (ENSCCRG00000010083)	znf277 (ENSCCRG00000048721)	TMEM168 (ENSCCRG00000065039)	bmt2 (ENSCCRG00000074235)	ahcyl2a (ENSCCRG00000046772)	ckmt1 (ENSCCRG00000048083) ##22	pdia3 (ENSCCRG00000048071)	ENSCCRG00000046733	alkbh3 (ENSCCRG00000059852)	hsd17b12a (ENSCCRG00000040604)	api5 (ENSCCRG00000039032)	ENSCCRG00000080959	ENSCCRG00000011698	brd1b (ENSCCRG00000038050)	pim3 (ENSCCRG00000057568)	ENSCCRG00000021530	ube2q2 (ENSCCRG00000079017)	ENSCCRG00000035287	ENSCCRG00000021381	nptna (ENSCCRG00000025836)	ENSCCRG00000011663
Golden-line barbel	MODERN SPECIES	30	CHRM2 (ENSSGRG00000048355)	fbxl14a (ENSSGRG00000048354)	PRR5 (ENSSGRG00000048353)	ENSSGRG00000048352	ENSSGRG00000048351	erc1a (ENSSGRG00000048303)	FGL2 (ENSSGRG00000048297)	TMEM60 (ENSSGRG00000048296)	LRRN3 (ENSSGRG00000048295)	immp2l (ENSSGRG00000048294)	DOCK4 (ENSSGRG00000048274)	znf277 (ENSSGRG00000048229)	TMEM168 (ENSSGRG00000048226)	bmt2 (ENSSGRG00000048224)	ahcyl2a (ENSSGRG00000047579)	ckmt1 (ENSSGRG00000047575) ##22	pdia3 (ENSSGRG00000046726)	ENSSGRG00000046701	alkbh3 (ENSSGRG00000046695)	hsd17b12a (ENSSGRG00000046670)	api5 (ENSSGRG00000046516)	brd1b (ENSSGRG00000046508)	pim3 (ENSSGRG00000046507)	ENSSGRG00000046506	ENSSGRG00000046505	ube2q2 (ENSSGRG00000046223)	ugt5a1 (ENSSGRG00000046217)	ENSSGRG00000046216	ENSSGRG00000046215	nptna (ENSSGRG00000046214)	HCN4 (ENSSGRG00000046198)
Zebrafish	MODERN SPECIES	17	rad52 (ENSDARG00000005274)	ENSDARG00000078992	erc1a (ENSDARG00000009941)	ENSDARG00000113226	ENSDARG00000019686	tmem60 (ENSDARG00000021589)	immp2l (ENSDARG00000004925)	LRRN3 (ENSDARG00000077569)	ENSDARG00000097406	DOCK4 (ENSDARG00000076213)	znf277 (ENSDARG00000025346)	TMEM168 (ENSDARG00000062168)	bmt2 (ENSDARG00000062181)	ENSDARG00000088813	ahcyl2a (ENSDARG00000051873)	ckmt1 (ENSDARG00000016598) ##22	FBXO31 (ENSDARG00000062195)	dynlrb2 (ENSDARG00000089952)	ENSDARG00000062199	sigirr (ENSDARG00000062204)	pkp3a (ENSDARG00000051861)	hexa (ENSDARG00000052113)	nr2e3 (ENSDARG00000045904)	stoml1 (ENSDARG00000062142)	CYP11A1 (ENSDARG00000092696)	cyp11a1.1 (ENSDARG00000002347)	ENSDARG00000051858	stra6 (ENSDARG00000051874)	islr2 (ENSDARG00000051875)	ush1c (ENSDARG00000051876)	abcc8 (ENSDARG00000051879)
Clupeiformes	DUPLICATION
Clupeiformes	ANCESTRAL SPECIES	233									ENSGT00390000004852.a.b.m	ENSGT00530000063981.b.c	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b.c ##22	ENSGT00950000182772.B.a.b.d ##22	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b.a	ENSGT00390000009048.a.a.h	ENSGT00940000158701.b	ENSGT00390000018319.a.a.a.b.d.b	ENSGT00940000164795	ENSGT00390000010463.b	ENSGT00940000157398.i.b
Denticle herring	MODERN SPECIES	8	ENSDCDG00000027591	SYT7 (ENSDCDG00000027597)	LRRC10B (ENSDCDG00000027601)	fads2 (ENSDCDG00000027614)	ENSDCDG00000027683	EPS8L2 (ENSDCDG00000027693)	ENSDCDG00000027854	MYRF (ENSDCDG00000027867)	tmem258 (ENSDCDG00000027873)	tmem138 (ENSDCDG00000027875)	ube2h (ENSDCDG00000027877)	PRR5L (ENSDCDG00000027878)	api5 (ENSDCDG00000027880)	hsd17b12a (ENSDCDG00000027886)	alkbh3 (ENSDCDG00000027928)	ckmt1 (ENSDCDG00000027932) ##22	pdia3 (ENSDCDG00000027939)	ENSDCDG00000027967	rlbp1b (ENSDCDG00000027974)	abhd2b (ENSDCDG00000027985)	mfge8b (ENSDCDG00000028169)	hapln3 (ENSDCDG00000028749)	ENSDCDG00000028752	ENSDCDG00000028755	PPIP5K1 (ENSDCDG00000028850)	ENSDCDG00000031714	ENSDCDG00000031722	zgc:193812 (ENSDCDG00000031744)	cart2 (ENSDCDG00000031760)	sh3gl3b (ENSDCDG00000031762)	nedd1 (ENSDCDG00000031766)
Atlantic herring	MODERN SPECIES	22	zmp:0000001138 (ENSCHAG00000011868)	ENSCHAG00000011874	NR2E3 (ENSCHAG00000011882)	arih1l (ENSCHAG00000011895)	ENSCHAG00000012061	ENSCHAG00000012141	ENSCHAG00000012180	ENSCHAG00000012229	ENSCHAG00000012262	ENSCHAG00000012284	ENSCHAG00000012323	ENSCHAG00000012353	rhcgl1 (ENSCHAG00000012389)	fes (ENSCHAG00000012848)	furina (ENSCHAG00000013140)	ENSCHAG00000013331 ##22	ENSCHAG00000013747	ENSCHAG00000013828	ENSCHAG00000013851	slc39a1 (ENSCHAG00000013858)	rlbp1a (ENSCHAG00000013889)	abhd2a (ENSCHAG00000013906)	mfge8a (ENSCHAG00000014091)	HAPLN3 (ENSCHAG00000014253)	ACAN (ENSCHAG00000014265)	PPIP5K1 (ENSCHAG00000014524)	MAP1A (ENSCHAG00000017521)	tp53bp1 (ENSCHAG00000017528)	tubgcp4 (ENSCHAG00000017626)	cdkn2aip (ENSCHAG00000017701)	cart3 (ENSCHAG00000017709)
Clupeiformes	ANCESTRAL SPECIES	233								ENSGT00390000004852.a.b.m	ENSGT00530000063981.b.c	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b.c ##22	ENSGT00950000182772.B.a.b.d ##22	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b.a	ENSGT00390000009048.a.a.h	ENSGT00940000158701.b	ENSGT00390000018319.a.a.a.b.d.b	ENSGT00940000164795	ENSGT00390000010463.b	ENSGT00940000157398.i.b	ENSGT00940000164439
Atlantic herring	MODERN SPECIES	19	CDK17 (ENSCHAG00000016953)	ELK3 (ENSCHAG00000016930)	hal (ENSCHAG00000016631)	ENSCHAG00000016579	metap2b (ENSCHAG00000016519)	ENSCHAG00000016323	NR2C1 (ENSCHAG00000015983)	ube2h (ENSCHAG00000015945)	ENSCHAG00000015939	ENSCHAG00000015667	api5 (ENSCHAG00000015164)	hsd17b12a (ENSCHAG00000014889)	alkbh3 (ENSCHAG00000014876)	si:ch1073-281m9.1 (ENSCHAG00000014870)	ENSCHAG00000014861	ckmt1 (ENSCHAG00000014407) ##22	CATSPER2 (ENSCHAG00000014313)	pdia3 (ENSCHAG00000014064)	ENSCHAG00000014051	rlbp1b (ENSCHAG00000014002)	abhd2b (ENSCHAG00000013808)	mfge8b (ENSCHAG00000013443)	hapln3 (ENSCHAG00000013424)	ENSCHAG00000013341	PPIP5K1 (ENSCHAG00000012889)	ENSCHAG00000012830	cart2 (ENSCHAG00000012801)	zgc:193812 (ENSCHAG00000012792)	ENSCHAG00000012775	ENSCHAG00000012739	sh3gl3b (ENSCHAG00000012714)
Euteleosteomorpha	ANCESTRAL SPECIES	96	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Protacanthopterygii	ANCESTRAL SPECIES	79	ENSGT00390000017491.g.b	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.c.b	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	481										ENSGT00390000000987.m.e	ENSGT00390000000987.n.c	ENSGT00390000011355.a.c	ENSGT00390000010991.u	ENSGT00940000154860.a.b.c	ENSGT00390000005222	ENSGT00950000182772.B.a.b.e ##22	ENSGT00940000155425.nb.a	ENSGT00940000160781.p	ENSGT00940000164526.b.a	ENSGT00940000156049.a.c.b	ENSGT00940000159628.d.e	ENSGT00940000155971.d.a.b.j	ENSGT00390000009048.a.a.h.c.b	ENSGT00940000158701.b.d	ENSGT00940000156476.h.f	ENSGT00390000016075.f	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b.g.b	ENSGT00940000159572.a.b.e	ENSGT00390000008748.b.g.a.g
Huchen	MODERN SPECIES	2708													si:ch1073-281m9.1 (ENSHHUG00000047715)	ENSHHUG00000047714	ENSHHUG00000047701	ckmt1 (ENSHHUG00000047686) ##22	ENSHHUG00000047685	pdia3 (ENSHHUG00000047648)	ENSHHUG00000047646	ENSHHUG00000047644	rlbp1b (ENSHHUG00000047640)	mfge8b (ENSHHUG00000047634)
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000157939.d.a	ENSGT00950000183017.b.a.a.d	ENSGT00990000206677.a	ENSGT00940000156519.p.a	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000153678.b.b	ENSGT00390000006485.c.tc.a	ENSGT00530000064192.i	ENSGT00940000161979.A.a.a.b.b	ENSGT00390000000987.m.e	ENSGT00390000000987.n.c	ENSGT00390000011355.a.c	ENSGT00390000010991.u	ENSGT00940000154860.a.b.c	ENSGT00390000005222	ENSGT00950000182772.B.a.b.e ##22	ENSGT01090000260373.d	ENSGT00940000155425.nb.a	ENSGT00940000160781.p	ENSGT00940000164526.b.a	ENSGT00940000156049.a.c.b	ENSGT00940000159628.d.e	ENSGT00940000155971.d.a.b.j	ENSGT00390000009048.a.a.h.c.b	ENSGT00940000158701.b.d	ENSGT00940000156476.h.f	ENSGT00390000016075.f	ENSGT00390000012715.f	ENSGT00390000012715.e.c	ENSGT00940000154905.i.b.g.b	ENSGT00940000159572.a.b.e
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000156519.p.a	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000153678.b.b	ENSGT00390000006485.c.tc.a	ENSGT00530000064192.i	ENSGT00940000161979.A.a.a.b.b	ENSGT00390000000987.m.e	ENSGT00390000000987.n.c	ENSGT00390000011355.a.c	ENSGT00390000010991.u	ENSGT00940000154860.a.b.c	ENSGT00940000157226.c	ENSGT00390000016821.d	ENSGT00940000164807.A.h.a.b.b.b.b.b.b	ENSGT00390000005222	ENSGT00950000182772.B.a.b.e ##22	ENSGT01090000260373.d	ENSGT00940000155425.nb.a	ENSGT00940000160781.p	ENSGT00940000164526.b.a	ENSGT00940000156049.a.c.b	ENSGT00940000159628.d.e	ENSGT00940000155971.d.a.b.j	ENSGT00390000009048.a.a.h.c.b	ENSGT00940000158701.b.d	ENSGT00940000156476.h.f	ENSGT00390000012715.f	ENSGT00390000012715.e.c	ENSGT00940000154905.i.b.g.b	ENSGT00940000159572.a.b.e	ENSGT00390000008748.b.g.a.g
Oncorhynchus_a	ANCESTRAL SPECIES	36	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000153678.b.b	ENSGT00390000006485.c.tc.a	ENSGT00530000064192.i	ENSGT00940000161979.A.a.a.b.b	ENSGT00390000000987.m.e	ENSGT00390000000987.n.c	ENSGT01000000221190	ENSGT00390000011355.a.c	ENSGT00390000010991.u	ENSGT00940000154860.a.b.c	ENSGT00940000157226.c	ENSGT00390000016821.d	ENSGT00940000164807.A.h.a.b.b.b.b.b.b	ENSGT00390000005222	ENSGT00950000182772.B.a.b.e ##22	ENSGT00940000155425.nb.a	ENSGT00940000160781.p	ENSGT00940000164526.b.a	ENSGT00940000156049.a.c.b	ENSGT00940000159628.d.e	ENSGT00940000155971.d.a.b.j	ENSGT00390000009048.a.a.h.c.b	ENSGT00940000158701.b.d	ENSGT00390000012715.f	ENSGT00390000012715.e.c	ENSGT00390000008748.b.g.a.g	ENSGT00980000202752	ENSGT00940000156052.k.b.e	ENSGT00390000001424.wb.a.b	ENSGT00950000183129.b.b.a.b
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES		PARP6 (ENSOTSG00005001329)	cox5aa (ENSOTSG00005001335)	arid3b (ENSOTSG00005001339)	ENSOTSG00005001343	znf609a (ENSOTSG00005001345)	tdg.1 (ENSOTSG00005001348)	ENSOTSG00005001355	ENSOTSG00005001361	samm50 (ENSOTSG00005001368)	api5 (ENSOTSG00005001616)	hsd17b12a (ENSOTSG00005001618)	ENSOTSG00005001623	si:ch1073-281m9.1 (ENSOTSG00005001625)	ENSOTSG00005001627	ENSOTSG00005001628	ENSOTSG00005001635 ##22	pdia3 (ENSOTSG00005003937)	ENSOTSG00005004079	rlbp1b (ENSOTSG00005004085)	mfge8b (ENSOTSG00005004089)	hapln3 (ENSOTSG00005004091)	ENSOTSG00005004094	PPIP5K1 (ENSOTSG00005004096)	ENSOTSG00005004100	rabggtb (ENSOTSG00005004103)	acadm (ENSOTSG00005004127)	RPS8 (ENSOTSG00005005706)	hectd3 (ENSOTSG00005005713)	ENSOTSG00005005869	ndc1 (ENSOTSG00005005872)	zgc:113691 (ENSOTSG00005005873)
Chinook salmon	MODERN SPECIES	14	DUSP7 (ENSOTSG00005020740)	ENSOTSG00005020733	spo11 (ENSOTSG00005020236)	ENSOTSG00005020007	ENSOTSG00005019961	tdg.1 (ENSOTSG00005019960)	ENSOTSG00005019959	ENSOTSG00005019958	samm50 (ENSOTSG00005019536)	api5 (ENSOTSG00005019535)	hsd17b12a (ENSOTSG00005019534)	ENSOTSG00005019533	si:ch1073-281m9.1 (ENSOTSG00005019532)	ENSOTSG00005019531	ENSOTSG00005019530	ckmt1 (ENSOTSG00005019243) ##22	pdia3 (ENSOTSG00005019081)	ENSOTSG00005019055	rlbp1b (ENSOTSG00005019054)	mfge8b (ENSOTSG00005019050)	hapln3 (ENSOTSG00005019046)	ENSOTSG00005019043	PPIP5K1 (ENSOTSG00005019041)	prdm8b (ENSOTSG00005019039)	fgf5 (ENSOTSG00005019036)	ENSOTSG00005015796	irf10 (ENSOTSG00005015790)	ENSOTSG00005015789	ENSOTSG00005015788	ENSOTSG00005015779	ENSOTSG00005015776
Chinook salmon	MODERN SPECIES	3043		ENSOTSG00005039538	ENSOTSG00005039621	ENSOTSG00005039623	ENSOTSG00005039780	ENSOTSG00005039781	tdg.1 (ENSOTSG00005039782)	ENSOTSG00005039785	samm50 (ENSOTSG00005039788)	api5 (ENSOTSG00005039824)	hsd17b12a (ENSOTSG00005039862)	ENSOTSG00005039863	si:ch1073-281m9.1 (ENSOTSG00005039864)	ENSOTSG00005039866	ENSOTSG00005039867	ENSOTSG00005039876 ##22	pdia3 (ENSOTSG00005040886)	ENSOTSG00005040927	rlbp1b (ENSOTSG00005040931)	mfge8b (ENSOTSG00005040934)	hapln3 (ENSOTSG00005040937)	ENSOTSG00005039774	PPIP5K1 (ENSOTSG00005039775)	rabggtb (ENSOTSG00005039779)	acadm (ENSOTSG00005039816)	RPS8 (ENSOTSG00005041002)	hectd3 (ENSOTSG00005041005)	ENSOTSG00005041213	ndc1 (ENSOTSG00005041216)	zgc:113691 (ENSOTSG00005041217)
Coho salmon	MODERN SPECIES	1	SINHCAF (ENSOKIG00005009841)	KXD1 (ENSOKIG00005009828)	ENSOKIG00005009823	ENSOKIG00005009751	ENSOKIG00005009727	ENSOKIG00005009705	ENSOKIG00005009687	ENSOKIG00005009676	SAMM50 (ENSOKIG00005009607)	api5 (ENSOKIG00005009496)	hsd17b12a (ENSOKIG00005009464)	alkbh3 (ENSOKIG00005009402)	si:ch1073-281m9.1 (ENSOKIG00005009385)	ENSOKIG00005009381	ENSOKIG00005009369	ckmt1 (ENSOKIG00005008013) ##22	pdia3 (ENSOKIG00005007789)	ENSOKIG00005007750	ENSOKIG00005007726	mfge8b (ENSOKIG00005007559)	hapln3 (ENSOKIG00005007546)	ENSOKIG00005007438	PPIP5K1 (ENSOKIG00005004622)	ENSOKIG00005004192	plex9.2 (ENSOKIG00005004185)	ENSOKIG00005004179	ENSOKIG00005004175	ENSOKIG00005004170	ENSOKIG00005002494	ENSOKIG00005002169	ENSOKIG00005002148
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000031008	ENSOMYG00000033219	ENSOMYG00000033236	ENSOMYG00000074579	ENSOMYG00000058645	ENSOMYG00000076938	ENSOMYG00000055903	finTRIM (ENSOMYG00000071957)	ENSOMYG00000030241	ENSOMYG00000030226	ENSOMYG00000030206	ENSOMYG00000030132	ENSOMYG00000030104	ENSOMYG00000071876	ENSOMYG00000030010	ENSOMYG00000029252 ##22	ENSOMYG00000070993	ENSOMYG00000028929	ENSOMYG00000028816	rlbp1b (ENSOMYG00000028803)	mfge8b (ENSOMYG00000028566)	hapln3 (ENSOMYG00000028355)	ENSOMYG00000028198	ENSOMYG00000027848	ENSOMYG00000074089	ENSOMYG00000067394	ENSOMYG00000047914	ENSOMYG00000027485	ENSOMYG00000027472	ENSOMYG00000053143	ENSOMYG00000027448
Salmo	ANCESTRAL SPECIES	50	ENSGT00950000183017.b.a.a.d	ENSGT00990000206677.a	ENSGT00940000156519.p.a	ENSGT01030000234567.B.a.a.b.b.a.b	ENSGT00940000153678.b.b	ENSGT00390000006485.c.tc.a	ENSGT00530000064192.i	ENSGT00940000161979.A.a.a.b.b	ENSGT00390000000987.m.e	ENSGT00390000000987.n.c	ENSGT00390000011355.a.c	ENSGT00390000010991.u	ENSGT00940000154860.a.b.c.a	ENSGT01090000260030.b.g	ENSGT00390000005222	ENSGT00950000182772.B.a.b.e ##22	ENSGT01090000260373.d	ENSGT00940000155425.nb.a	ENSGT00940000160781.p	ENSGT00940000164526.b.a	ENSGT00940000156049.a.c.b	ENSGT00940000159628.d.e	ENSGT00940000155971.d.a.b.j	ENSGT00390000009048.a.a.h.c.b	ENSGT00940000158701.b.d	ENSGT00940000156476.h.f	ENSGT00390000016075.f	ENSGT00390000012715.f	ENSGT00390000012715.e.c	ENSGT00940000154905.i.b.g.b	ENSGT00940000159572.a.b.e
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000087190	ENSSSAG00000096119	ENSSSAG00000016047	ENSSSAG00000120145	ENSSSAG00000098573	ENSSSAG00000115876	ENSSSAG00000114275	ENSSSAG00000093416	ENSSSAG00000009550	ENSSSAG00000038344	ENSSSAG00000009601	ENSSSAG00000009754	ENSSSAG00000093060	ENSSSAG00000082683	ENSSSAG00000009808	KCRU (ENSSSAG00000009844) ##22	ENSSSAG00000010256	ENSSSAG00000010287	ENSSSAG00000115159	ENSSSAG00000073632	mfge8b (ENSSSAG00000107925)	ENSSSAG00000015922	ENSSSAG00000016736	ENSSSAG00000038638	ENSSSAG00000086338	scamp2 (ENSSSAG00000106645)	ENSSSAG00000038809	plex9.2 (ENSSSAG00000102698)	ENSSSAG00000110347	ENSSSAG00000105982	ENSSSAG00000039419
River trout	MODERN SPECIES	33	ENSSTUG00000011128	SINHCAF (ENSSTUG00000011257)	kxd1 (ENSSTUG00000011337)	ENSSTUG00000011353	ENSSTUG00000011370	ENSSTUG00000011457	tdg.1 (ENSSTUG00000011466)	TDG (ENSSTUG00000011520)	samm50 (ENSSTUG00000011581)	api5 (ENSSTUG00000011868)	hsd17b12a (ENSSTUG00000011934)	ENSSTUG00000011954	si:ch1073-281m9.1 (ENSSTUG00000011971)	ENSSTUG00000011992	ENSSTUG00000011994	ckmt1 (ENSSTUG00000012030) ##22	ENSSTUG00000012626	pdia3 (ENSSTUG00000012642)	ENSSTUG00000012726	rlbp1b (ENSSTUG00000012741)	mfge8b (ENSSTUG00000012778)	hapln3 (ENSSTUG00000013295)	ENSSTUG00000013313	PPIP5K1 (ENSSTUG00000013370)	ENSSTUG00000013630	scamp2 (ENSSTUG00000013644)	mpi (ENSSTUG00000013671)	plex9.2 (ENSSTUG00000013679)	ENSSTUG00000013690	myo9ab (ENSSTUG00000013734)	ENSSTUG00000014324
Salmoninae	ANCESTRAL SPECIES	59	ENSGT01100000263547.a.b.b.a.a.b.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a	ENSGT00940000157813.q	ENSGT00390000001927.a.a.d	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v	ENSGT00940000154860.a.b.d	ENSGT00940000157226	ENSGT00390000016821.c	ENSGT00950000182772.B.a.b.f ##22	ENSGT00910000144338	ENSGT00940000155425.nb.b	ENSGT00940000160781.o	ENSGT00940000164526.b.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a.c.a	ENSGT00940000159628.d.f	ENSGT00940000155971.d.a.b.i	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000158701.b.c	ENSGT00940000156476.h.e	ENSGT00390000016075.e	ENSGT00940000154905.i.b.g.a	ENSGT00940000159572.a.b.f	ENSGT00390000008748.b.g.a.h
Huchen	MODERN SPECIES	795					ENSHHUG00000038384	ENSHHUG00000038080	tdg.1 (ENSHHUG00000038048)	TDG (ENSHHUG00000038031)	uqcc6 (ENSHHUG00000038023)	ENSHHUG00000038019	samm50 (ENSHHUG00000037985)	api5 (ENSHHUG00000037977)	hsd17b12a (ENSHHUG00000037941)	alkbh3 (ENSHHUG00000037921)	si:ch1073-281m9.1 (ENSHHUG00000037919)	ENSHHUG00000037742 ##22	CATSPER2 (ENSHHUG00000037710)	pdia3 (ENSHHUG00000037429)	ENSHHUG00000037426	rlbp1b (ENSHHUG00000037419)	abhd2b (ENSHHUG00000037413)	mfge8b (ENSHHUG00000037350)	hapln3 (ENSHHUG00000037343)	ENSHHUG00000037332	PPIP5K1 (ENSHHUG00000037326)
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT01100000263547.a.b.b.a.a.b.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a	ENSGT00940000157813.q	ENSGT00390000001927.a.a.d	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v	ENSGT00940000154860.a.b.d	ENSGT00940000157226	ENSGT00390000016821.c	ENSGT00950000182772.B.a.b.f ##22	ENSGT00910000144338	ENSGT00940000155425.nb.b	ENSGT00940000160781.o	ENSGT00940000164526.b.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a.c.a	ENSGT00940000159628.d.f	ENSGT00940000155971.d.a.b.i	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000158701.b.c	ENSGT00940000156476.h.e	ENSGT00390000016075.e	ENSGT00940000154905.i.b.g.a	ENSGT00940000159572.a.b.f	ENSGT00390000008748.b.g.a.h
Salmo	ANCESTRAL SPECIES	50	ENSGT01100000263547.a.b.b.a.a.b.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a	ENSGT00940000157813.q	ENSGT00390000001927.a.a.d	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a.b	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v	ENSGT00940000154860.a.b.d	ENSGT00940000157226	ENSGT00390000016821.c	ENSGT00950000182772.B.a.b.f ##22	ENSGT00910000144338	ENSGT00940000155425.nb.b	ENSGT00940000160781.o	ENSGT00940000164526.b.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a.c.a	ENSGT00940000159628.d.f	ENSGT00940000155971.d.a.b.i	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000158701.b.c	ENSGT00940000156476.h.e	ENSGT00390000016075.e	ENSGT00940000154905.i.b.g.a	ENSGT00940000159572.a.b.f	ENSGT00390000008748.b.g.a.h
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000058227	ENSSSAG00000118001	RPS13 (ENSSSAG00000058186)	ENSSSAG00000107551	ENSSSAG00000104431	ENSSSAG00000039946	NUCB2 (ENSSSAG00000039009)	ENSSSAG00000038954	ENSSSAG00000105533	ENSSSAG00000009558	ENSSSAG00000073923	api5 (ENSSSAG00000073800)	hsd17b12 (ENSSSAG00000073776)	alkbh3 (ENSSSAG00000073769)	si:ch1073-281m9.1 (ENSSSAG00000073763)	ENSSSAG00000073723 ##22	CATSPER2 (ENSSSAG00000073703)	ENSSSAG00000073640	isg20 (ENSSSAG00000073634)	rlbp1b (ENSSSAG00000010500)	abhd2b (ENSSSAG00000073625)	mfge8b (ENSSSAG00000010621)	hapln3 (ENSSSAG00000073362)	ACAN (ENSSSAG00000073259)	ENSSSAG00000083420	ENSSSAG00000072949	ENSSSAG00000112088	scamp2 (ENSSSAG00000072876)	ENSSSAG00000072874	ENSSSAG00000119636	ENSSSAG00000070797
River trout	MODERN SPECIES	37	RPS13 (ENSSTUG00000014784)	ppp1r15b (ENSSTUG00000014860)	PIK3C2A (ENSSTUG00000014992)	ENSSTUG00000017940	NUCB2 (ENSSTUG00000017959)	ENSSTUG00000018300	tdg.1 (ENSSTUG00000018309)	ENSSTUG00000018323	uqcc6 (ENSSTUG00000018338)	ENSSTUG00000018346	samm50 (ENSSTUG00000018364)	api5 (ENSSTUG00000018508)	hsd17b12a (ENSSTUG00000018595)	alkbh3 (ENSSTUG00000018620)	si:ch1073-281m9.1 (ENSSTUG00000018652)	ENSSTUG00000018683 ##22	CATSPER2 (ENSSTUG00000018848)	pdia3 (ENSSTUG00000018931)	ENSSTUG00000019369	rlbp1b (ENSSTUG00000019384)	abhd2b (ENSSTUG00000019429)	mfge8b (ENSSTUG00000019664)	hapln3 (ENSSTUG00000020580)	ENSSTUG00000020588	PPIP5K1 (ENSSTUG00000020682)	ENSSTUG00000020903	scamp2 (ENSSTUG00000020916)	mpi (ENSSTUG00000020963)	myo9ab (ENSSTUG00000021165)	ENSSTUG00000027183	znf609a (ENSSTUG00000027195)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000155817.a.b.c.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a	ENSGT00940000157813.q	ENSGT00390000001927.a.a.d	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v	ENSGT00940000154860.a.b.d	ENSGT00940000157226.d	ENSGT00390000016821.c	ENSGT00950000182772.B.a.b.f ##22	ENSGT00910000144338	ENSGT00940000155425.nb.b	ENSGT00940000160781.o	ENSGT00940000164526.b.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a.c.a	ENSGT00940000159628.d.f	ENSGT00940000155971.d.a.b.i	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000158701.b.c	ENSGT00940000156476.h.e	ENSGT00390000016075.e	ENSGT00940000154905.i.b.g.a	ENSGT00940000159572.a.b.f	ENSGT00390000008748.b.g.a.h
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000155817.a.b.c.b	ENSGT00940000154404.a.b	ENSGT00390000017491.g.b.a	ENSGT00940000157813.q	ENSGT00390000001927.a.a.d	ENSGT01090000260029.a.a.a.a.a.b.b.b.a.b.f.a.b.a.b.b.a	ENSGT00390000000987.m.f	ENSGT00390000000987.n.d	ENSGT00940000173873	ENSGT00940000154487.B	ENSGT00390000011355.a.d	ENSGT00390000010991.v	ENSGT00940000154860.a.b.d	ENSGT00940000157226.d	ENSGT00390000016821.c	ENSGT00950000182772.B.a.b.f ##22	ENSGT00910000144338	ENSGT00940000155425.nb.b	ENSGT00940000160781.o	ENSGT00940000164526.b.b	ENSGT00950000182902.b.a.d.b.b.b	ENSGT00940000156049.a.c.a	ENSGT00940000159628.d.f	ENSGT00940000155971.d.a.b.i	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000158701.b.c	ENSGT00940000156476.h.e	ENSGT00390000016075.e	ENSGT00940000154905.i.b.g.a	ENSGT00940000159572.a.b.f	ENSGT00390000008748.b.g.a.h
Coho salmon	MODERN SPECIES	14	plekha7a (ENSOKIG00005025066)	RPS13 (ENSOKIG00005025270)	ppp1r15b (ENSOKIG00005025355)	PIK3C2A (ENSOKIG00005025698)	NUCB2 (ENSOKIG00005030998)	ENSOKIG00005032071	tdg.1 (ENSOKIG00005032082)	TDG (ENSOKIG00005032096)	ENSOKIG00005032115	ENSOKIG00005032127	SAMM50 (ENSOKIG00005032297)	api5 (ENSOKIG00005032354)	hsd17b12a (ENSOKIG00005032428)	alkbh3 (ENSOKIG00005032440)	si:ch1073-281m9.1 (ENSOKIG00005032451)	ENSOKIG00005032470 ##22	CATSPER2 (ENSOKIG00005032798)	ENSOKIG00005032927	ENSOKIG00005033093	rlbp1b (ENSOKIG00005033111)	abhd2b (ENSOKIG00005033186)	mfge8b (ENSOKIG00005033281)	hapln3 (ENSOKIG00005033620)	ENSOKIG00005033638	PPIP5K1 (ENSOKIG00005033726)	ENSOKIG00005033976	scamp2 (ENSOKIG00005033985)	mpi (ENSOKIG00005034018)	myo9ab (ENSOKIG00005034184)	ENSOKIG00005036809	znf609a (ENSOKIG00005036816)
Chinook salmon	MODERN SPECIES	10	plekha7a (ENSOTSG00005035853)	ENSOTSG00005035859	ppp1r15b (ENSOTSG00005035861)	RPS13 (ENSOTSG00005035860)	PIK3C2A (ENSOTSG00005035876)	NUCB2 (ENSOTSG00005039770)	ENSOTSG00005039927	tdg.1 (ENSOTSG00005039928)	TDG (ENSOTSG00005039930)	ENSOTSG00005039932	ENSOTSG00005039933	samm50 (ENSOTSG00005039936)	api5 (ENSOTSG00005040008)	hsd17b12a (ENSOTSG00005040032)	alkbh3 (ENSOTSG00005040036)	ENSOTSG00005040049 ##22	PPIP5K1 (ENSOTSG00005041693)	ENSOTSG00005042016	scamp2 (ENSOTSG00005042018)	mpi (ENSOTSG00005042021)	myo9ab (ENSOTSG00005042023)	ENSOTSG00005042572	znf609a (ENSOTSG00005042574)	ENSOTSG00005042578	ENSOTSG00005042585	spg11 (ENSOTSG00005043214)	ciao2a (ENSOTSG00005043313)	ENSOTSG00005043314	CALML4 (ENSOTSG00005043315)	CLN6 (ENSOTSG00005043317)	ENSOTSG00005043318
Rainbow trout	MODERN SPECIES	11	ppp1r15b (ENSOMYG00000037589)	RPS13 (ENSOMYG00000067065)	ENSOMYG00000031278	ENSOMYG00000052044	NUCB2 (ENSOMYG00000029455)	ENSOMYG00000028981	tdg.1 (ENSOMYG00000028866)	ENSOMYG00000028845	uqcc6 (ENSOMYG00000028840)	ENSOMYG00000028830	ENSOMYG00000028536	api5 (ENSOMYG00000028394)	hsd17b12a (ENSOMYG00000028328)	alkbh3 (ENSOMYG00000028287)	si:ch1073-281m9.1 (ENSOMYG00000028271)	ENSOMYG00000028065 ##22	CATSPER2 (ENSOMYG00000027928)	ENSOMYG00000027805	ENSOMYG00000027726	rlbp1b (ENSOMYG00000027702)	ENSOMYG00000075198	abhd2b (ENSOMYG00000027668)	mfge8b (ENSOMYG00000026872)	hapln3 (ENSOMYG00000026651)	ENSOMYG00000026624	ENSOMYG00000026419	ENSOMYG00000056012	ENSOMYG00000026257	ENSOMYG00000026246	ENSOMYG00000036432	ENSOMYG00000035857
Northern pike	MODERN SPECIES	18	ENSELUG00000005206	si:dkey-10o6.2 (ENSELUG00000003488)	ENSELUG00000003474	ENSELUG00000003441	tdg.1 (ENSELUG00000003423)	ENSELUG00000003397	uqcc6 (ENSELUG00000025646)	ENSELUG00000026568	samm50 (ENSELUG00000003354)	api5 (ENSELUG00000003310)	hsd17b12a (ENSELUG00000003288)	ALKB3 (ENSELUG00000003260)	si:ch1073-281m9.1 (ENSELUG00000003248)	ENSELUG00000024185	ENSELUG00000003234	ckmt1 (ENSELUG00000001605) ##22	CATSPER2 (ENSELUG00000003165)	pdia3 (ENSELUG00000000103)	ENSELUG00000003116	rlbp1b (ENSELUG00000003104)	abhd2b (ENSELUG00000028609)	mfge8b (ENSELUG00000003093)	hapln3 (ENSELUG00000003082)	ACAN (ENSELUG00000028766)	ENSELUG00000028865	PPIP5K1 (ENSELUG00000003069)	ENSELUG00000003024	scamp2 (ENSELUG00000000090)	mpi (ENSELUG00000003005)	ENSELUG00000002996	plex9.2 (ENSELUG00000029295)
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000176053	ENSGT00940000154905.i.b
Cod	MODERN SPECIES	22	LRRC17 (ENSGMOG00000018461)	ENSGMOG00000031067	ENSGMOG00000018989	ENSGMOG00000018996	ENSGMOG00000019008	tdg.1 (ENSGMOG00000019080)	ENSGMOG00000019092	uqcc6 (ENSGMOG00000035825)	ENSGMOG00000028062	ENSGMOG00000019103	api5 (ENSGMOG00000019118)	hsd17b12a (ENSGMOG00000019133)	alkbh3 (ENSGMOG00000019146)	si:ch1073-281m9.1 (ENSGMOG00000019160)	ENSGMOG00000019163	ENSGMOG00000019196 ##22	ENSGMOG00000019203	ENSGMOG00000032618	rlbp1b (ENSGMOG00000019212)	ABHD2 (ENSGMOG00000019225)	mfge8b (ENSGMOG00000019232)	hapln3 (ENSGMOG00000036173)	ENSGMOG00000019249	ENSGMOG00000019258	ENSGMOG00000031046	scamp2 (ENSGMOG00000019326)	ENSGMOG00000019331	plex9.2 (ENSGMOG00000019335)	ENSGMOG00000017080	ENSGMOG00000032835	ENSGMOG00000026830
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000176053	ENSGT00940000154905.i.b
Pinecone sodierfish	MODERN SPECIES	20	ENSMMDG00005021734	taf3 (ENSMMDG00005021729)	CELF2 (ENSMMDG00005021649)	dhtkd1 (ENSMMDG00005021586)	camk1db (ENSMMDG00005021114)	ucmab (ENSMMDG00005021084)	CDK17 (ENSMMDG00005018465)	elk3 (ENSMMDG00005018420)	hal (ENSMMDG00005018417)	zgc:101783 (ENSMMDG00005018413)	hsd17b12a (ENSMMDG00005018395)	alkbh3 (ENSMMDG00005018388)	ENSMMDG00005018384	si:ch1073-281m9.1 (ENSMMDG00005018383)	ENSMMDG00005018380	ckmt1 (ENSMMDG00005018331) ##22	pdia3 (ENSMMDG00005018245)	ENSMMDG00005018236	rlbp1b (ENSMMDG00005018231)	ABHD2 (ENSMMDG00005018226)	mfge8b (ENSMMDG00005018074)	hapln3 (ENSMMDG00005018067)	ENSMMDG00005018062	PPIP5K1 (ENSMMDG00005016687)	ENSMMDG00005016614	ENSMMDG00005016609	scamp2 (ENSMMDG00005016607)	mpi (ENSMMDG00005016584)	plex9.2 (ENSMMDG00005016580)	ENSMMDG00005016577	myo9ab (ENSMMDG00005016568)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000176053	ENSGT00940000154905.i.b
Tiger tail seahorse	MODERN SPECIES	223	tbc1d15 (ENSHCOG00000009059)	tph2 (ENSHCOG00000009042)	rpgrip1l (ENSHCOG00000009004)	NOX5 (ENSHCOG00000008971)	ambra1b (ENSHCOG00000008935)	ENSHCOG00000008919	ENSHCOG00000008905	st8sia2 (ENSHCOG00000008890)	fam174b (ENSHCOG00000008871)	ENSHCOG00000008865	chd2 (ENSHCOG00000008855)	ENSHCOG00000008779	rgma (ENSHCOG00000008770)	si:ch1073-281m9.1 (ENSHCOG00000008757)	ENSHCOG00000008748	ckmt1 (ENSHCOG00000008712) ##22	pdia3 (ENSHCOG00000008703)	ppib (ENSHCOG00000008676)	OAZ2 (ENSHCOG00000008670)	ENSHCOG00000008657	myo9ab (ENSHCOG00000008638)	plex9.2 (ENSHCOG00000008574)	mpi (ENSHCOG00000008568)	scamp2 (ENSHCOG00000008543)	ENSHCOG00000008508	PPIP5K1 (ENSHCOG00000008460)	ENSHCOG00000008375	hapln3 (ENSHCOG00000000273)	mfge8b (ENSHCOG00000008333)	ABHD2 (ENSHCOG00000008328)	rlbp1b (ENSHCOG00000008283)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Zig-zag eel	MODERN SPECIES	20	ppp1r15b (ENSMAMG00000023001)	RPS13 (ENSMAMG00000023002)	ENSMAMG00000023008	NUCB2 (ENSMAMG00000023017)	ENSMAMG00000027513	ENSMAMG00000023028	ENSMAMG00000023030	ENSMAMG00000023032	ENSMAMG00000023034	ENSMAMG00000023035	ENSMAMG00000023038	api5 (ENSMAMG00000023039)	HSD17B12 (ENSMAMG00000023049)	alkbh3 (ENSMAMG00000023051)	ENSMAMG00000023053	ENSMAMG00000023055 ##22	ENSMAMG00000023056	ENSMAMG00000023057	rlbp1b (ENSMAMG00000023058)	ABHD2 (ENSMAMG00000023059)	mfge8b (ENSMAMG00000023060)	hapln3 (ENSMAMG00000023061)	ENSMAMG00000023064	ENSMAMG00000023066	ENSMAMG00000024923	scamp2 (ENSMAMG00000023071)	ENSMAMG00000023072	plex9.2 (ENSMAMG00000028276)	ENSMAMG00000025509	ENSMAMG00000023076	ENSMAMG00000023077
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Siamese fighting fish	MODERN SPECIES	17	ppp1r15b (ENSBSLG00000000674)	ENSBSLG00000000688	ENSBSLG00000000694	ENSBSLG00000000701	ENSBSLG00000000715	tdg.1 (ENSBSLG00000000725)	ENSBSLG00000000733	ENSBSLG00000000735	samm50 (ENSBSLG00000000743)	api5 (ENSBSLG00000000828)	ENSBSLG00000001192	hsd17b12a (ENSBSLG00000001264)	alkbh3 (ENSBSLG00000001318)	si:ch1073-281m9.1 (ENSBSLG00000001326)	ENSBSLG00000001334	ckmt1 (ENSBSLG00000001433) ##22	pdia3 (ENSBSLG00000001620)	ENSBSLG00000001708	rlbp1b (ENSBSLG00000001714)	ENSBSLG00000001740	TMED6 (ENSBSLG00000001747)	ENSBSLG00000001753	ZDHHC7 (ENSBSLG00000001761)	ANKRD27 (ENSBSLG00000001778)	ENSBSLG00000002153	faap24 (ENSBSLG00000002216)	SLC7A10 (ENSBSLG00000002228)	DUS2 (ENSBSLG00000002249)	ENSBSLG00000002294	pdcd2l (ENSBSLG00000002389)	amfra (ENSBSLG00000002451)
Climbing perch	MODERN SPECIES	19	NUCB2 (ENSATEG00000000106)	ENSATEG00000027801	ENSATEG00000028262	ENSATEG00000025526	ENSATEG00000021929	tdg.1 (ENSATEG00000021912)	ENSATEG00000021899	uqcc6 (ENSATEG00000021890)	ENSATEG00000021880	ENSATEG00000021853	api5 (ENSATEG00000021818)	hsd17b12a (ENSATEG00000021797)	alkbh3 (ENSATEG00000021785)	si:ch1073-281m9.1 (ENSATEG00000021781)	ENSATEG00000021768	ENSATEG00000021752 ##22	ENSATEG00000021726	ENSATEG00000021719	rlbp1b (ENSATEG00000021710)	ABHD2 (ENSATEG00000021685)	mfge8b (ENSATEG00000021667)	hapln3 (ENSATEG00000021654)	ENSATEG00000021623	ENSATEG00000021582	ENSATEG00000028756	scamp2 (ENSATEG00000021561)	ENSATEG00000021548	plex9.2 (ENSATEG00000021547)	ENSATEG00000025308	ENSATEG00000021489	ENSATEG00000021465
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00940000154905.i.b	ENSGT00550000074827.fb	ENSGT00940000157725
Turbot	MODERN SPECIES	1	carmil2 (ENSSMAG00000004112)	ENSSMAG00000004154	ripor1 (ENSSMAG00000004172)	ENSSMAG00000004223	ENSSMAG00000004243	ENSSMAG00000004259	ENSSMAG00000004277	ENSSMAG00000004289	ENSSMAG00000031849	api5 (ENSSMAG00000004332)	hsd17b12a (ENSSMAG00000004377)	alkbh3 (ENSSMAG00000004404)	si:ch1073-281m9.1 (ENSSMAG00000004421)	ENSSMAG00000037494	ENSSMAG00000004425	ENSSMAG00000004451 ##22	pdia3 (ENSSMAG00000004475)	ENSSMAG00000004520	rlbp1b (ENSSMAG00000004552)	ABHD2 (ENSSMAG00000004568)	mfge8b (ENSSMAG00000004623)	hapln3 (ENSSMAG00000004654)	ENSSMAG00000004747	ENSSMAG00000004794	ENSSMAG00000004814	ENSSMAG00000004852	ENSSMAG00000030933	ENSSMAG00000004881	ENSSMAG00000005090	ENSSMAG00000033066	ENSSMAG00000005130
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	5	ENSCSEG00000012113	denr (ENSCSEG00000012090)	HIP1R (ENSCSEG00000012059)	RILPL1 (ENSCSEG00000012038)	kmt5aa (ENSCSEG00000012018)	sbno1 (ENSCSEG00000011919)	CDK2AP1 (ENSCSEG00000011903)	MPHOSPH9 (ENSCSEG00000011886)	ENSCSEG00000011879	ENSCSEG00000011807	KIF2A (ENSCSEG00000011790)	ENSCSEG00000011784	ENSCSEG00000011775 #17	oclna (ENSCSEG00000011772)	RASGRF2 (ENSCSEG00000011747) #21	CKMT1A (ENSCSEG00000011736) ##22	ckmt2a (ENSCSEG00000011734) #22	ENSCSEG00000011731	ENSCSEG00000011721 #15	ENSCSEG00000011700	CNNM4 (ENSCSEG00000011693)	ENSCSEG00000011684	ENSCSEG00000011676	PURB (ENSCSEG00000011673)	ENSCSEG00000011660	ENSCSEG00000011639	ENSCSEG00000011631	ENSCSEG00000011625	acads (ENSCSEG00000011604)	crybb1 (ENSCSEG00000011597)	cryba4 (ENSCSEG00000011585)
Tongue sole	MODERN SPECIES	16	PIK3C2A (ENSCSEG00000000943)	nucb2b (ENSCSEG00000000931)	si:dkey-10o6.2 (ENSCSEG00000000927)	si:dkey-10o6.2 (ENSCSEG00000000918)	ENSCSEG00000000909	ENSCSEG00000000899	tdg.1 (ENSCSEG00000000885)	uqcc6 (ENSCSEG00000000881)	ENSCSEG00000000877	ENSCSEG00000000872	samm50 (ENSCSEG00000000853)	api5 (ENSCSEG00000000841)	hsd17b12a (ENSCSEG00000000827)	alkbh3 (ENSCSEG00000000814)	ENSCSEG00000000807	ckmt1 (ENSCSEG00000000803) ##22	pdia3 (ENSCSEG00000000779)	ENSCSEG00000000768	rlbp1b (ENSCSEG00000000759)	ABHD2 (ENSCSEG00000000745)	mfge8b (ENSCSEG00000000736)	hapln3 (ENSCSEG00000000732)	ENSCSEG00000000723	PPIP5K1 (ENSCSEG00000000686)	ENSCSEG00000000678	dnaaf4 (ENSCSEG00000000642)	anpepb.1 (ENSCSEG00000000623)	ANPEP (ENSCSEG00000000611)	ENSCSEG00000000601	ndrg4 (ENSCSEG00000000519)	gins3 (ENSCSEG00000000507)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Seriola	ANCESTRAL SPECIES	5	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00940000157742.a.r.a	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Greater amberjack	MODERN SPECIES	86	nucb2b (ENSSDUG00000000974)	si:dkey-10o6.2 (ENSSDUG00000000943)	ENSSDUG00000000931	ENSSDUG00000000892	tdg.1 (ENSSDUG00000000881)	TDG (ENSSDUG00000000776)	uqcc6 (ENSSDUG00000000763)	ENSSDUG00000000754	samm50 (ENSSDUG00000000669)	api5 (ENSSDUG00000000618)	hsd17b12a (ENSSDUG00000000526)	alkbh3 (ENSSDUG00000000513)	si:ch1073-281m9.1 (ENSSDUG00000000501)	ENSSDUG00000000489	ENSSDUG00000000473	CKMT1A (ENSSDUG00000000430) ##22	pdia3 (ENSSDUG00000000376)	ENSSDUG00000000366	rlbp1b (ENSSDUG00000000340)	ABHD2 (ENSSDUG00000000276)	mfge8b (ENSSDUG00000000258)	hapln3 (ENSSDUG00000000223)	ENSSDUG00000000103	ENSSDUG00000023584	PPIP5K1 (ENSSDUG00000023574)	ENSSDUG00000023569	scamp2 (ENSSDUG00000023562)	mpi (ENSSDUG00000023554)	myo9ab (ENSSDUG00000023523)	psma4 (ENSSDUG00000023519)	OAZ2 (ENSSDUG00000023517)
Yellowtail amberjack	MODERN SPECIES	2263	nucb2b (ENSSLDG00000003500)	si:dkey-10o6.2 (ENSSLDG00000003462)	ENSSLDG00000003457	ENSSLDG00000003384	tdg.1 (ENSSLDG00000003368)	TDG (ENSSLDG00000003349)	uqcc6 (ENSSLDG00000003338)	ENSSLDG00000003330	samm50 (ENSSLDG00000003224)	api5 (ENSSLDG00000003146)	hsd17b12a (ENSSLDG00000003093)	alkbh3 (ENSSLDG00000003080)	si:ch1073-281m9.1 (ENSSLDG00000003060)	ENSSLDG00000003035	ENSSLDG00000003018	CKMT1A (ENSSLDG00000002951) ##22	pdia3 (ENSSLDG00000002871)	ENSSLDG00000002860	rlbp1b (ENSSLDG00000002849)	ABHD2 (ENSSLDG00000002803)	mfge8b (ENSSLDG00000002751)	hapln3 (ENSSLDG00000002718)	ENSSLDG00000002693	ACAN (ENSSLDG00000002666)	ENSSLDG00000002644	PPIP5K1 (ENSSLDG00000002528)	ENSSLDG00000002488	scamp2 (ENSSLDG00000002442)	mpi (ENSSLDG00000002394)	ENSSLDG00000002379	myo9ab (ENSSLDG00000002238)
Barramundi perch	MODERN SPECIES	319	rps13 (ENSLCAG00010026073)	PIK3C2A (ENSLCAG00010026069)	nucb2b (ENSLCAG00010026052)	si:dkey-10o6.2 (ENSLCAG00010026044)	ENSLCAG00010026041	ENSLCAG00010026037	tdg.1 (ENSLCAG00010026031)	TDG (ENSLCAG00010026028)	uqcc6 (ENSLCAG00010026024)	ENSLCAG00010026018	samm50 (ENSLCAG00010025976)	api5 (ENSLCAG00010025907)	hsd17b12a (ENSLCAG00010025858)	alkbh3 (ENSLCAG00010025854)	si:ch1073-281m9.1 (ENSLCAG00010025849)	CKMT1A (ENSLCAG00010025790) ##22	pdia3 (ENSLCAG00010025770)	ENSLCAG00010025752	rlbp1b (ENSLCAG00010025749)	ABHD2 (ENSLCAG00010025745)	mfge8b (ENSLCAG00010025732)	hapln3 (ENSLCAG00010025728)	ACAN (ENSLCAG00010025726)	PPIP5K1 (ENSLCAG00010025636)
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Tetraodontidae	ANCESTRAL SPECIES	32	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00940000160682.b.c.a	ENSGT00940000157236.j	ENSGT00730000111146
Tetraodon	MODERN SPECIES	4	ENSTNIG00000001991	ENSTNIG00000002778	SOX6 (ENSTNIG00000004906)	zgc:56106 (ENSTNIG00000004904)	ENSTNIG00000004905	rps13 (ENSTNIG00000003101)	PIK3C2A (ENSTNIG00000003100)	NUCB2 (ENSTNIG00000003099)	ENSTNIG00000003098	TDG (ENSTNIG00000003097)	samm50 (ENSTNIG00000003096)	api5 (ENSTNIG00000003095)	hsd17b12a (ENSTNIG00000010384)	alkbh3 (ENSTNIG00000010385)	ENSTNIG00000010386	ckmt1 (ENSTNIG00000010387) ##22	pdia3 (ENSTNIG00000010388)	ENSTNIG00000010389	rlbp1b (ENSTNIG00000010390)	ABHD2 (ENSTNIG00000010391)	mfge8b (ENSTNIG00000010392)	hapln3 (ENSTNIG00000010393)	ENSTNIG00000010394	PPIP5K1 (ENSTNIG00000010395)	ENSTNIG00000010396	scamp2 (ENSTNIG00000010397)	mpi (ENSTNIG00000010398)	plex9.2 (ENSTNIG00000010399)	ENSTNIG00000010400	brd1b (ENSTNIG00000010401)	ftsj1 (ENSTNIG00000010402)
Fugu	MODERN SPECIES	21	ppp1r15b (ENSTRUG00000022770)	BET1L (ENSTRUG00000026354)	PIK3C2A (ENSTRUG00000014988)	si:dkey-10o6.2 (ENSTRUG00000031687)	ENSTRUG00000015186	ENSTRUG00000030135	tdg.1 (ENSTRUG00000015232)	ENSTRUG00000015289	c9h12orf73 (ENSTRUG00000031354)	ENSTRUG00000015293	api5 (ENSTRUG00000015347)	hsd17b12a (ENSTRUG00000015387)	ENSTRUG00000029343	alkbh3 (ENSTRUG00000021459)	ENSTRUG00000015457	ckmt1 (ENSTRUG00000015493) ##22	pdia3 (ENSTRUG00000015581)	ENSTRUG00000029532	ENSTRUG00000029320	rlbp1b (ENSTRUG00000015662)	ABHD2 (ENSTRUG00000015701)	mfge8b (ENSTRUG00000015729)	hapln3 (ENSTRUG00000015776)	ENSTRUG00000015801	ENSTRUG00000022686	ENSTRUG00000030597	ENSTRUG00000032289	scamp2 (ENSTRUG00000016067)	mpi (ENSTRUG00000016095)	TAFA5 (ENSTRUG00000024918)	ENSTRUG00000021466
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Ballan wrasse	MODERN SPECIES	88	PIK3C2A (ENSLBEG00000003665)	NUCB2 (ENSLBEG00000003757)	si:dkey-10o6.2 (ENSLBEG00000003823)	si:dkey-10o6.2 (ENSLBEG00000003839)	ENSLBEG00000003864	tdg.1 (ENSLBEG00000003900)	TDG (ENSLBEG00000003928)	uqcc6 (ENSLBEG00000003959)	ENSLBEG00000003974	samm50 (ENSLBEG00000004001)	api5 (ENSLBEG00000004053)	hsd17b12a (ENSLBEG00000004169)	alkbh3 (ENSLBEG00000004226)	si:ch1073-281m9.1 (ENSLBEG00000004252)	ENSLBEG00000004279	ckmt1 (ENSLBEG00000004359) ##22	pdia3 (ENSLBEG00000004419)	ENSLBEG00000004494	rlbp1b (ENSLBEG00000004503)	ABHD2 (ENSLBEG00000004543)	mfge8b (ENSLBEG00000004610)	hapln3 (ENSLBEG00000004642)	ENSLBEG00000004679	ENSLBEG00000004721	ENSLBEG00000004749	ENSLBEG00000004791	BET1L (ENSLBEG00000004861)	deaf1 (ENSLBEG00000004875)	drd4a (ENSLBEG00000004894)	ENSLBEG00000004906	GRAMD4 (ENSLBEG00000004928)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Stickleback	MODERN SPECIES	14	zgc:56106 (ENSGACG00000006659)	plekha7a (ENSGACG00000006687)	ppp1r15b (ENSGACG00000006701)	rps13 (ENSGACG00000006703)	PIK3C2A (ENSGACG00000006738)	nucb2b (ENSGACG00000006759)	si:dkey-10o6.2 (ENSGACG00000006806)	tdg.1 (ENSGACG00000006809)	TDG (ENSGACG00000006810)	samm50 (ENSGACG00000006822)	api5 (ENSGACG00000006871)	ENSGACG00000006927	hsd17b12a (ENSGACG00000006929)	alkbh3 (ENSGACG00000006950)	ENSGACG00000006985	ckmt1 (ENSGACG00000006990) ##22	pdia3 (ENSGACG00000007033)	ENSGACG00000007047	rlbp1b (ENSGACG00000007054)	ABHD2 (ENSGACG00000007084)	mfge8b (ENSGACG00000007091)	hapln3 (ENSGACG00000007102)	ENSGACG00000007109	PPIP5K1 (ENSGACG00000007114)	ENSGACG00000007133	MAP1A (ENSGACG00000007135)	scamp2 (ENSGACG00000007153)	mpi (ENSGACG00000007166)	plex9.2 (ENSGACG00000007185)	myo9ab (ENSGACG00000007186)	psma4 (ENSGACG00000007210)
Lumpfish	MODERN SPECIES	21	PIK3C2A (ENSCLMG00005019490)	nucb2b (ENSCLMG00005020629)	si:dkey-10o6.2 (ENSCLMG00005020638)	ENSCLMG00005020641	ENSCLMG00005020643	tdg.1 (ENSCLMG00005020737)	ENSCLMG00005020739	uqcc6 (ENSCLMG00005020750)	ENSCLMG00005020751	samm50 (ENSCLMG00005020753)	api5 (ENSCLMG00005020815)	hsd17b12a (ENSCLMG00005020820)	alkbh3 (ENSCLMG00005020821)	si:ch1073-281m9.1 (ENSCLMG00005000063)	ENSCLMG00005000095	ckmt1 (ENSCLMG00005000160) ##22	pdia3 (ENSCLMG00005000317)	ENSCLMG00005000332	rlbp1b (ENSCLMG00005000333)	ABHD2 (ENSCLMG00005000336)	mfge8b (ENSCLMG00005000340)	hapln3 (ENSCLMG00005000483)	ENSCLMG00005000485	PPIP5K1 (ENSCLMG00005000501)	ENSCLMG00005000517	scamp2 (ENSCLMG00005000521)	mpi (ENSCLMG00005000525)	ENSCLMG00005000528	MYO9A (ENSCLMG00005000602)	psma4 (ENSCLMG00005005198)	OAZ2 (ENSCLMG00005005203)
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.c.a	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e
Channel bull blenny	MODERN SPECIES	20	mpi (ENSCGOG00000003697)	plex9.2 (ENSCGOG00000003721)	scamp2 (ENSCGOG00000003722)	ENSCGOG00000003727	ENSCGOG00000003729	hapln3 (ENSCGOG00000003735)	mfge8b (ENSCGOG00000003761)	ABHD2 (ENSCGOG00000004481)	rlbp1b (ENSCGOG00000004867)	ENSCGOG00000004872	api5 (ENSCGOG00000004892)	hsd17b12a (ENSCGOG00000005474)	alkbh3 (ENSCGOG00000005573)	si:ch1073-281m9.1 (ENSCGOG00000005577)	ENSCGOG00000005578	ckmt1 (ENSCGOG00000005584) ##22	pdia3 (ENSCGOG00000005622)	samm50 (ENSCGOG00000006224)	ENSCGOG00000006682	uqcc6 (ENSCGOG00000006685)	ENSCGOG00000006690	tdg.1 (ENSCGOG00000006696)	ENSCGOG00000006709	ENSCGOG00000006716	si:dkey-10o6.2 (ENSCGOG00000006731)	ENSCGOG00000006736	PIK3C2A (ENSCGOG00000006820)	rps13 (ENSCGOG00000009608)	ppp1r15b (ENSCGOG00000009620)	plekha7a (ENSCGOG00000009625)	ENSCGOG00000009684
Pike perch	MODERN SPECIES	126	rps13 (ENSSLUG00000019096)	PIK3C2A (ENSSLUG00000016130)	nucb2b (ENSSLUG00000015799)	si:dkey-10o6.2 (ENSSLUG00000015774)	ENSSLUG00000015755	ENSSLUG00000015743	tdg.1 (ENSSLUG00000015734)	ENSSLUG00000015694	uqcc6 (ENSSLUG00000015685)	ENSSLUG00000015679	samm50 (ENSSLUG00000015649)	api5 (ENSSLUG00000015460)	hsd17b12a (ENSSLUG00000015418)	alkbh3 (ENSSLUG00000015399)	si:ch1073-281m9.1 (ENSSLUG00000015390)	ckmt1 (ENSSLUG00000014928) ##22	pdia3 (ENSSLUG00000014765)	ENSSLUG00000014745	rlbp1b (ENSSLUG00000023843)	ABHD2 (ENSSLUG00000023832)	mfge8b (ENSSLUG00000023573)	hapln3 (ENSSLUG00000023550)	ENSSLUG00000023542	ENSSLUG00000023538	ENSSLUG00000023528
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
European seabass	MODERN SPECIES	19	PIK3C2A (ENSDLAG00005005054)	ENSDLAG00005004823	ENSDLAG00005004804	ENSDLAG00005004787	ENSDLAG00005031369	tdg.1 (ENSDLAG00005004775)	ENSDLAG00005004656	uqcc6 (ENSDLAG00005030725)	ENSDLAG00005029880	ENSDLAG00005004253	api5 (ENSDLAG00005003859)	hsd17b12a (ENSDLAG00005032372)	alkbh3 (ENSDLAG00005003779)	si:ch1073-281m9.1 (ENSDLAG00005003777)	ENSDLAG00005003757	ENSDLAG00005003321 ##22	ENSDLAG00005002303	ENSDLAG00005002273	rlbp1b (ENSDLAG00005012289)	ABHD2 (ENSDLAG00005002196)	mfge8b (ENSDLAG00005001662)	hapln3 (ENSDLAG00005001595)	ACAN (ENSDLAG00005001539)	ENSDLAG00005001455	ENSDLAG00005001426	scamp2 (ENSDLAG00005030568)	ENSDLAG00005001352	plex9.2 (ENSDLAG00005001335)	ENSDLAG00005001333	ENSDLAG00005025233	ENSDLAG00005025222
Large yellow croaker	MODERN SPECIES	485	frem1a (ENSLCRG00005016616)	ENSLCRG00005016564	ENSLCRG00005016563	PAQR9 (ENSLCRG00005016562)	ACO1 (ENSLCRG00005016506)	trmt10a (ENSLCRG00005016405)	ARSJ (ENSLCRG00005016400)	ENSLCRG00005015991	ANK2 (ENSLCRG00005007850)	mad2l1 (ENSLCRG00005006748)	pde5ab (ENSLCRG00005006281)	api5 (ENSLCRG00005006080)	hsd17b12a (ENSLCRG00005006024)	alkbh3 (ENSLCRG00005006006)	ENSLCRG00005005977	CKMT1B (ENSLCRG00005005165) ##22	pdia3 (ENSLCRG00005004817)	ENSLCRG00005004666	rlbp1b (ENSLCRG00005004658)	ABHD2 (ENSLCRG00005004461)	mfge8b (ENSLCRG00005003686)	hapln3 (ENSLCRG00005003576)	ENSLCRG00005003563	PPIP5K1 (ENSLCRG00005003398)	ENSLCRG00005003203	scamp2 (ENSLCRG00005003138)	mpi (ENSLCRG00005016777)	plex9.2 (ENSLCRG00005016776)	ENSLCRG00005016775	ENSLCRG00005016774	tdg.1 (ENSLCRG00005016772)
Gilthead seabream	MODERN SPECIES	22	BET1L (ENSSAUG00010024882)	PIK3C2A (ENSSAUG00010022979)	nucb2b (ENSSAUG00010022913)	si:dkey-10o6.2 (ENSSAUG00010022903)	ENSSAUG00010022902	ENSSAUG00010022900	tdg.1 (ENSSAUG00010022898)	TDG (ENSSAUG00010022895)	ENSSAUG00010022892	ENSSAUG00010022891	samm50 (ENSSAUG00010022890)	api5 (ENSSAUG00010022888)	hsd17b12a (ENSSAUG00010022882)	alkbh3 (ENSSAUG00010022880)	ENSSAUG00010022879	CKMT1A (ENSSAUG00010022645) ##22	pdia3 (ENSSAUG00010022486)	ENSSAUG00010022482	rlbp1b (ENSSAUG00010022481)	ABHD2 (ENSSAUG00010022477)	mfge8b (ENSSAUG00010022025)	hapln3 (ENSSAUG00010022019)	ACAN (ENSSAUG00010022009)	PPIP5K1 (ENSSAUG00010019615)	ENSSAUG00010019577	scamp2 (ENSSAUG00010019573)	mpi (ENSSAUG00010019571)	plex9.2 (ENSSAUG00010019569)	ENSSAUG00010019565	myo9ab (ENSSAUG00010017560)	psma4 (ENSSAUG00010017501)
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Oryzias	ANCESTRAL SPECIES	16	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Oryzias_b	ANCESTRAL SPECIES	58	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b
Indian medaka	MODERN SPECIES	15	rps13 (ENSOMEG00000003476)	PIK3C2A (ENSOMEG00000003564)	NUCB2 (ENSOMEG00000003601)	si:dkey-10o6.2 (ENSOMEG00000003617)	ENSOMEG00000003635	ENSOMEG00000003652	tdg.1 (ENSOMEG00000003666)	ENSOMEG00000003695	ENSOMEG00000003710	samm50 (ENSOMEG00000003726)	api5 (ENSOMEG00000003769)	hsd17b12a (ENSOMEG00000003809)	alkbh3 (ENSOMEG00000003835)	si:ch1073-281m9.1 (ENSOMEG00000003845)	ENSOMEG00000003878	CKMT1A (ENSOMEG00000003918) ##22	pdia3 (ENSOMEG00000003948)	ENSOMEG00000003990	rlbp1b (ENSOMEG00000004015)	ABHD2 (ENSOMEG00000004073)	mfge8b (ENSOMEG00000004132)	hapln3 (ENSOMEG00000004149)	ENSOMEG00000004165	PPIP5K1 (ENSOMEG00000004199)	ENSOMEG00000004212	ENSOMEG00000004221	ENSOMEG00000004229	ENSOMEG00000000099	cat (ENSOMEG00000004280)	syt12 (ENSOMEG00000004321)	PEAK1 (ENSOMEG00000004348)
Javanese ricefish	MODERN SPECIES	20	ppp1r15b (ENSOJAG00000003764)	ENSOJAG00000003737	PIK3C2A (ENSOJAG00000001474)	si:dkey-10o6.2 (ENSOJAG00000001174)	ENSOJAG00000001071	ENSOJAG00000001034	tdg.1 (ENSOJAG00000001007)	ENSOJAG00000000970	ENSOJAG00000000953	samm50 (ENSOJAG00000000908)	api5 (ENSOJAG00000000840)	hsd17b12a (ENSOJAG00000000808)	alkbh3 (ENSOJAG00000000802)	si:ch1073-281m9.1 (ENSOJAG00000000799)	ENSOJAG00000000790	CKMT1A (ENSOJAG00000000661) ##22	pdia3 (ENSOJAG00000000547)	ENSOJAG00000000491	rlbp1b (ENSOJAG00000000480)	ABHD2 (ENSOJAG00000000466)	mfge8b (ENSOJAG00000000430)	hapln3 (ENSOJAG00000000398)	ENSOJAG00000000368	ENSOJAG00000000152	ENSOJAG00000000113	ENSOJAG00000000105	ENSOJAG00000019339	ENSOJAG00000019317	met (ENSOJAG00000019095)	cav1 (ENSOJAG00000019030)	cav2 (ENSOJAG00000019015)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00390000017491	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Japanese Medaka HdrR	MODERN SPECIES	20	NUCB2 (ENSORLG00000001308)	ENSORLG00000023056	si:dkey-10o6.2 (ENSORLG00000001314)	ENSORLG00000024238	ENSORLG00000029635	tdg.1 (ENSORLG00000029322)	ENSORLG00000001329	ENSORLG00000030202	uqcc6 (ENSORLG00000027408)	samm50 (ENSORLG00000001373)	api5 (ENSORLG00000001385)	hsd17b12a (ENSORLG00000001421)	alkbh3 (ENSORLG00000001437)	si:ch1073-281m9.1 (ENSORLG00000023672)	ENSORLG00000001442	ENSORLG00000001451 ##22	pdia3 (ENSORLG00000001475)	ENSORLG00000029585	rlbp1b (ENSORLG00000001487)	ABHD2 (ENSORLG00000001498)	mfge8b (ENSORLG00000001529)	hapln3 (ENSORLG00000001540)	ENSORLG00000001551	ENSORLG00000001575	ENSORLG00000024836	ENSORLG00000029905	scamp2 (ENSORLG00000026524)	mpi (ENSORLG00000001616)	plex9.2 (ENSORLG00000023958)	ENSORLG00000030645	ENSORLG00000001682
Chinese medaka	MODERN SPECIES	490	plekha7a (ENSOSIG00000016264)	ppp1r15b (ENSOSIG00000016252)	rps13 (ENSOSIG00000016249)	PIK3C2A (ENSOSIG00000008861)	nucb2b (ENSOSIG00000008553)	si:dkey-10o6.2 (ENSOSIG00000008552)	ENSOSIG00000008551	ENSOSIG00000008549	tdg.1 (ENSOSIG00000008548)	TDG (ENSOSIG00000008547)	ENSOSIG00000008545	samm50 (ENSOSIG00000008038)	hsd17b12a (ENSOSIG00000008016)	alkbh3 (ENSOSIG00000008007)	ENSOSIG00000007199	CKMT1A (ENSOSIG00000006481) ##22	pdia3 (ENSOSIG00000006413)	ENSOSIG00000006407	rlbp1b (ENSOSIG00000006403)	ABHD2 (ENSOSIG00000006107)	mfge8b (ENSOSIG00000006069)	hapln3 (ENSOSIG00000006060)	ENSOSIG00000006039	ENSOSIG00000006033	ENSOSIG00000006031
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e.e	ENSGT00940000154905.i.b
NAME_6	ANCESTRAL SPECIES	216												ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT01020000230648	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e.f	ENSGT00390000012715.e.e
Sailfin molly	MODERN SPECIES	1250															ENSPLAG00000006035	ckmt1 (ENSPLAG00000006016) ##22	pdia3 (ENSPLAG00000005981)	ENSPLAG00000005932	rlbp1b (ENSPLAG00000005844)	ABHD2 (ENSPLAG00000005829)	mfge8b (ENSPLAG00000005776)	hapln3 (ENSPLAG00000000115)	ENSPLAG00000005758
Amazon molly	MODERN SPECIES	580													hsd17b12a (ENSPFOG00000002602)	alkbh3 (ENSPFOG00000002705)	ENSPFOG00000002785	CKMT1A (ENSPFOG00000002901) ##22	pdia3 (ENSPFOG00000003052)	ENSPFOG00000003318	rlbp1b (ENSPFOG00000003347)	ABHD2 (ENSPFOG00000003442)	mfge8b (ENSPFOG00000003628)	hapln3 (ENSPFOG00000003850)	ENSPFOG00000003926	PPIP5K1 (ENSPFOG00000004141)	ENSPFOG00000005194	ENSPFOG00000022374	scamp2 (ENSPFOG00000005300)	mpi (ENSPFOG00000005394)	plex9.2 (ENSPFOG00000005517)	ENSPFOG00000005521	ENSPFOG00000021742
Guppy	MODERN SPECIES	458	PIK3C2A (ENSPREG00000004760)	nucb2b (ENSPREG00000004893)	si:dkey-10o6.2 (ENSPREG00000005108)	ENSPREG00000005141	ENSPREG00000005170	ENSPREG00000005199	ENSPREG00000005225	ENSPREG00000005381	ENSPREG00000005391	samm50 (ENSPREG00000005410)	api5 (ENSPREG00000005447)	hsd17b12a (ENSPREG00000005493)	alkbh3 (ENSPREG00000005505)	si:ch1073-281m9.1 (ENSPREG00000005528)	ENSPREG00000005552	ckmt1 (ENSPREG00000005643) ##22	ENSPREG00000005681	pdia3 (ENSPREG00000005720)	ENSPREG00000005954	rlbp1b (ENSPREG00000005970)	ABHD2 (ENSPREG00000005995)	mfge8b (ENSPREG00000006042)	hapln3 (ENSPREG00000006070)	ENSPREG00000006091	PPIP5K1 (ENSPREG00000006124)	ENSPREG00000006172	ENSPREG00000006195	ENSPREG00000006245	ENSPREG00000006265	ENSPREG00000006282	ENSPREG00000006297
Platyfish	MODERN SPECIES	11	si:dkey-10o6.2 (ENSXMAG00000012432)	ENSXMAG00000012433	ENSXMAG00000022128	tdg.1 (ENSXMAG00000012434)	TDG (ENSXMAG00000012448)	uqcc6 (ENSXMAG00000023821)	ENSXMAG00000012449	samm50 (ENSXMAG00000012450)	api5 (ENSXMAG00000012462)	hsd17b12a (ENSXMAG00000001590)	alkbh3 (ENSXMAG00000013123)	ENSXMAG00000028574	ENSXMAG00000029513	si:ch1073-281m9.1 (ENSXMAG00000028133)	ENSXMAG00000013108	CKMT1A (ENSXMAG00000013099) ##22	pdia3 (ENSXMAG00000013069)	ENSXMAG00000013066	rlbp1b (ENSXMAG00000002347)	ABHD2 (ENSXMAG00000013057)	mfge8b (ENSXMAG00000013036)	hapln3 (ENSXMAG00000030033)	ENSXMAG00000012577	PPIP5K1 (ENSXMAG00000012976)	ENSXMAG00000023853	scamp2 (ENSXMAG00000012952)	mpi (ENSXMAG00000012946)	plex9.2 (ENSXMAG00000012944)	SOX6 (ENSXMAG00000012894)	ENSXMAG00000012892	INSC (ENSXMAG00000012891)
NAME_4	ANCESTRAL SPECIES	65	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Sheepshead minnow	MODERN SPECIES	482	SPAM1 (ENSCVAG00000009780)	GPR37 (ENSCVAG00000009716)	ENSCVAG00000009712	grm8b (ENSCVAG00000009693)	ENSCVAG00000009661	acot19 (ENSCVAG00000009651)	ftsj1 (ENSCVAG00000009618)	ENSCVAG00000000702	tdg.1 (ENSCVAG00000009574)	samm50 (ENSCVAG00000009564)	api5 (ENSCVAG00000009525)	hsd17b12a (ENSCVAG00000009483)	alkbh3 (ENSCVAG00000009432)	si:ch1073-281m9.1 (ENSCVAG00000009421)	ENSCVAG00000009414	CKMT1B (ENSCVAG00000009359) ##22	pdia3 (ENSCVAG00000009351)	ENSCVAG00000009300	rlbp1b (ENSCVAG00000009243)	ABHD2 (ENSCVAG00000009219)	mfge8b (ENSCVAG00000009176)	hapln3 (ENSCVAG00000009162)
Mummichog	MODERN SPECIES	2196	rps13 (ENSFHEG00000019826)	PIK3C2A (ENSFHEG00000019808)	nucb2b (ENSFHEG00000019578)	si:dkey-10o6.2 (ENSFHEG00000019035)	ENSFHEG00000018997	tdg.1 (ENSFHEG00000018960)	ENSFHEG00000018954	uqcc6 (ENSFHEG00000018903)	ENSFHEG00000018898	samm50 (ENSFHEG00000018891)	api5 (ENSFHEG00000018834)	hsd17b12a (ENSFHEG00000018795)	alkbh3 (ENSFHEG00000018735)	si:ch1073-281m9.1 (ENSFHEG00000018722)	ENSFHEG00000018715	CKMT1A (ENSFHEG00000018705) ##22	pdia3 (ENSFHEG00000018700)	ENSFHEG00000018658	rlbp1b (ENSFHEG00000018621)	ABHD2 (ENSFHEG00000018595)	mfge8b (ENSFHEG00000018539)	hapln3 (ENSFHEG00000018530)	ENSFHEG00000018489	PPIP5K1 (ENSFHEG00000018336)	ENSFHEG00000018247	ENSFHEG00000018240	scamp2 (ENSFHEG00000018228)	mpi (ENSFHEG00000018214)	plex9.2 (ENSFHEG00000018188)	ENSFHEG00000018181	myo9ab (ENSFHEG00000018161)
Aplocheiloidei	ANCESTRAL SPECIES	86	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075
Mangrove rivulus	MODERN SPECIES	185	si:dkey-10o6.2 (ENSKMAG00000006197)	ENSKMAG00000006210	ENSKMAG00000006229	tdg.1 (ENSKMAG00000006258)	TDG (ENSKMAG00000006274)	uqcc6 (ENSKMAG00000006291)	ENSKMAG00000006303	samm50 (ENSKMAG00000006326)	api5 (ENSKMAG00000006383)	ENSKMAG00000006443	hsd17b12a (ENSKMAG00000006474)	alkbh3 (ENSKMAG00000006499)	si:ch1073-281m9.1 (ENSKMAG00000006520)	ENSKMAG00000006530	ENSKMAG00000006553	CKMT1B (ENSKMAG00000006608) ##22	pdia3 (ENSKMAG00000006635)	ENSKMAG00000006695	rlbp1b (ENSKMAG00000006708)	ABHD2 (ENSKMAG00000006740)	ENSKMAG00000006773	mfge8b (ENSKMAG00000006805)	hapln3 (ENSKMAG00000006826)	ENSKMAG00000006835	PPIP5K1 (ENSKMAG00000006865)	ENSKMAG00000006916	scamp2 (ENSKMAG00000006931)	mpi (ENSKMAG00000006983)
Turquoise killifish	MODERN SPECIES	1622	rps13 (ENSNFUG00015007074)	PIK3C2A (ENSNFUG00015007259)	NUCB2B (ENSNFUG00015011572)	si:dkey-10o6.2 (ENSNFUG00015011789)	ENSNFUG00015011820	ENSNFUG00015011852	tdg.1 (ENSNFUG00015011875)	ENSNFUG00015011888	ENSNFUG00015011903	ENSNFUG00015011914	SAMM50 (ENSNFUG00015011940)	api5 (ENSNFUG00015012092)	ENSNFUG00015012471	hsd17b12a (ENSNFUG00015012494)	TICRR (ENSNFUG00015012565)	CKMT1A (ENSNFUG00015012611) ##22	PDIA3 (ENSNFUG00015013479)	ENSNFUG00015013499	rlbp1b (ENSNFUG00015013527)	ABHD2 (ENSNFUG00015013560)	mfge8b (ENSNFUG00015013620)	hapln3 (ENSNFUG00015013932)	ENSNFUG00015013958	ENSNFUG00015013964	ENSNFUG00015013968	ENSNFUG00015013972	IMMP2L (ENSNFUG00015013973)	znf277 (ENSNFUG00015013985)	SPG11 (ENSNFUG00015014005)	FAM96A (ENSNFUG00015014088)	PDCD2L (ENSNFUG00015014102)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00940000154905.i.b	ENSGT00550000074827.fb
Orange clownfish	MODERN SPECIES	18	PIK3C2A (ENSAPEG00000011014)	nucb2b (ENSAPEG00000011177)	si:dkey-10o6.2 (ENSAPEG00000011246)	ENSAPEG00000011290	ENSAPEG00000011439	tdg.1 (ENSAPEG00000011460)	ENSAPEG00000011509	uqcc6 (ENSAPEG00000011529)	ENSAPEG00000011539	samm50 (ENSAPEG00000011571)	api5 (ENSAPEG00000011647)	hsd17b12a (ENSAPEG00000011706)	alkbh3 (ENSAPEG00000011723)	si:ch1073-281m9.1 (ENSAPEG00000011759)	ENSAPEG00000011798	ckmt1 (ENSAPEG00000011896) ##22	pdia3 (ENSAPEG00000011926)	ENSAPEG00000012004	rlbp1b (ENSAPEG00000012012)	ABHD2 (ENSAPEG00000012032)	mfge8b (ENSAPEG00000012106)	hapln3 (ENSAPEG00000012130)	ENSAPEG00000012155	ENSAPEG00000012297	PPIP5K1 (ENSAPEG00000012316)	ENSAPEG00000012402	ENSAPEG00000012411	scamp2 (ENSAPEG00000012420)	mpi (ENSAPEG00000012475)	plex9.2 (ENSAPEG00000012492)	myo9ab (ENSAPEG00000012501)
Clown anemonefish	MODERN SPECIES	1038																CKMT1A (ENSAOCG00000012193) ##22	pdia3 (ENSAOCG00000012157)	ENSAOCG00000002636	rlbp1b (ENSAOCG00000012075)	ABHD2 (ENSAOCG00000011956)	mfge8b (ENSAOCG00000011899)	hapln3 (ENSAOCG00000011860)	ENSAOCG00000011821	PPIP5K1 (ENSAOCG00000011734)	ENSAOCG00000011655	scamp2 (ENSAOCG00000011641)	mpi (ENSAOCG00000011611)	plex9.2 (ENSAOCG00000011593)	ENSAOCG00000011576
Spiny chromis	MODERN SPECIES	1135				ENSAPOG00000008292	ENSAPOG00000008302	tdg.1 (ENSAPOG00000008315)	ENSAPOG00000008348	uqcc6 (ENSAPOG00000008364)	ENSAPOG00000008371	samm50 (ENSAPOG00000008427)	api5 (ENSAPOG00000008475)	hsd17b12a (ENSAPOG00000008484)	alkbh3 (ENSAPOG00000008495)	si:ch1073-281m9.1 (ENSAPOG00000008505)	ENSAPOG00000008562	CKMT1A (ENSAPOG00000008612) ##22	pdia3 (ENSAPOG00000008674)	ENSAPOG00000008681
Bicolor damselfish	MODERN SPECIES	257	nucb2b (ENSSPAG00000020970)	si:dkey-10o6.2 (ENSSPAG00000020962)	ENSSPAG00000020946	ENSSPAG00000020911	tdg.1 (ENSSPAG00000020904)	ENSSPAG00000020888	uqcc6 (ENSSPAG00000020874)	ENSSPAG00000020868	samm50 (ENSSPAG00000020827)	api5 (ENSSPAG00000020763)	hsd17b12a (ENSSPAG00000020733)	alkbh3 (ENSSPAG00000020713)	si:ch1073-281m9.1 (ENSSPAG00000020705)	si:ch1073-281m9.1 (ENSSPAG00000020694)	ENSSPAG00000020648	CKMT1A (ENSSPAG00000020621) ##22	pdia3 (ENSSPAG00000020570)	ENSSPAG00000020558	rlbp1b (ENSSPAG00000020541)	ABHD2 (ENSSPAG00000020514)	mfge8b (ENSSPAG00000020483)	hapln3 (ENSSPAG00000020472)	ACAN (ENSSPAG00000020439)	PPIP5K1 (ENSSPAG00000020287)	ENSSPAG00000020260	ENSSPAG00000020247	ENSSPAG00000020237	ENSSPAG00000020226
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Midas cichlid	MODERN SPECIES	1326			ENSACIG00000011657	si:dkey-10o6.2 (ENSACIG00000011675)	ENSACIG00000011697	tdg.1 (ENSACIG00000011718)	ENSACIG00000011760	uqcc6 (ENSACIG00000011797)	ENSACIG00000011805	samm50 (ENSACIG00000011817)	api5 (ENSACIG00000011852)	hsd17b12a (ENSACIG00000011872)	alkbh3 (ENSACIG00000011887)	si:ch1073-281m9.1 (ENSACIG00000011909)	ENSACIG00000011913	CKMT1A (ENSACIG00000011960) ##22	ENSACIG00000011985	pdia3 (ENSACIG00000012011)	ENSACIG00000012040	rlbp1b (ENSACIG00000012095)	ABHD2 (ENSACIG00000012109)	mfge8b (ENSACIG00000012133)	hapln3 (ENSACIG00000012185)	ENSACIG00000012195	PPIP5K1 (ENSACIG00000012248)	ENSACIG00000012294	SCAMP2 (ENSACIG00000012315)	mpi (ENSACIG00000012340)	ENSACIG00000012370	myo9ab (ENSACIG00000012402)	OAZ2 (ENSACIG00000012607)
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.f	ENSGT00390000012715.e	ENSGT00940000154905.i.b
Nile tilapia	MODERN SPECIES	19	PIK3C2A (ENSONIG00000015560)	nucb2b (ENSONIG00000015568)	si:dkey-10o6.2 (ENSONIG00000015572)	ENSONIG00000015573	ENSONIG00000015580	tdg.1 (ENSONIG00000015582)	ENSONIG00000015586	ENSONIG00000015588	ENSONIG00000015589	samm50 (ENSONIG00000015591)	api5 (ENSONIG00000015593)	hsd17b12a (ENSONIG00000015599)	alkbh3 (ENSONIG00000015605)	si:ch1073-281m9.1 (ENSONIG00000036412)	ENSONIG00000015608	CKMT1A (ENSONIG00000015611) ##22	pdia3 (ENSONIG00000015614)	ENSONIG00000015622	rlbp1b (ENSONIG00000015624)	ABHD2 (ENSONIG00000015627)	mfge8b (ENSONIG00000015629)	hapln3 (ENSONIG00000015632)	ENSONIG00000015637	PPIP5K1 (ENSONIG00000015640)	ENSONIG00000027891	ENSONIG00000015643	SCAMP2 (ENSONIG00000015646)	mpi (ENSONIG00000027835)	myo9ab (ENSONIG00000012795)	OAZ2 (ENSONIG00000012811)	ppib (ENSONIG00000012814)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00390000009048.a.a.h.d	ENSGT00940000177561	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Haplochromini_B	ANCESTRAL SPECIES	20	ENSGT00940000157813	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00940000155662.e.b.a	ENSGT00940000155662.e.b.b	ENSGT00390000000987.m	ENSGT00390000000987.n	ENSGT00390000007685	ENSGT00940000154487.B	ENSGT00390000011355.a	ENSGT00390000010991	ENSGT00940000154860.a.b	ENSGT00940000157226	ENSGT00390000016821	ENSGT00390000005222	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000160781	ENSGT00940000164526.b	ENSGT00950000182902.b.a.c	ENSGT00940000156049.a	ENSGT00940000159628.d	ENSGT00940000155971.d.a.b	ENSGT00940000177561	ENSGT00390000009048.a.a.h.d	ENSGT00940000158701.b	ENSGT00940000156476.h	ENSGT00390000016075	ENSGT00390000012715.e	ENSGT00940000154905.i.b	ENSGT00940000157725
Eastern happy	MODERN SPECIES	19	nucb2b (ENSACLG00000022976)	si:dkey-10o6.2 (ENSACLG00000023011)	ENSACLG00000023034	ENSACLG00000023055	tdg.1 (ENSACLG00000023067)	ENSACLG00000023076	ENSACLG00000023111	ENSACLG00000023121	samm50 (ENSACLG00000023149)	api5 (ENSACLG00000023182)	ENSACLG00000023206	hsd17b12a (ENSACLG00000023208)	alkbh3 (ENSACLG00000023226)	si:ch1073-281m9.1 (ENSACLG00000023257)	ENSACLG00000023264	CKMT1A (ENSACLG00000023294) ##22	pdia3 (ENSACLG00000023381)	ENSACLG00000023402	rlbp1b (ENSACLG00000023408)	ENSACLG00000023425	ABHD2 (ENSACLG00000023427)	mfge8b (ENSACLG00000023446)	hapln3 (ENSACLG00000023480)	ENSACLG00000023486	PPIP5K1 (ENSACLG00000023567)	ENSACLG00000023875	ENSACLG00000023885	ENSACLG00000023908	scamp2 (ENSACLG00000023915)	mpi (ENSACLG00000023928)	ENSACLG00000023991
Zebra mbuna	MODERN SPECIES	1110	PIK3C2A (ENSMZEG00005012057)	nucb2b (ENSMZEG00005012040)	si:dkey-10o6.2 (ENSMZEG00005012018)	ENSMZEG00005011995	ENSMZEG00005011966	tdg.1 (ENSMZEG00005011957)	ENSMZEG00005011935	uqcc6 (ENSMZEG00005011915)	ENSMZEG00005011903	samm50 (ENSMZEG00005011853)	api5 (ENSMZEG00005011817)	hsd17b12a (ENSMZEG00005011795)	alkbh3 (ENSMZEG00005011786)	si:ch1073-281m9.1 (ENSMZEG00005011779)	ENSMZEG00005011749	CKMT1A (ENSMZEG00005011732) ##22	pdia3 (ENSMZEG00005011699)	ENSMZEG00005011688	ENSMZEG00005011683	rlbp1b (ENSMZEG00005011671)	ABHD2 (ENSMZEG00005011640)	mfge8b (ENSMZEG00005011554)	hapln3 (ENSMZEG00005011511)	ENSMZEG00005011488	ENSMZEG00005011474	PPIP5K1 (ENSMZEG00005011301)	ENSMZEG00005011246	scamp2 (ENSMZEG00005011191)	mpi (ENSMZEG00005011185)	myo9ab (ENSMZEG00005011148)	OAZ2 (ENSMZEG00005011098)
P. nyererei	MODERN SPECIES	338	PIK3C2A (ENSPNYG00000010764)	nucb2b (ENSPNYG00000010721)	si:dkey-10o6.2 (ENSPNYG00000010698)	ENSPNYG00000010610	ENSPNYG00000010594	tdg.1 (ENSPNYG00000010567)	ENSPNYG00000010553	uqcc6 (ENSPNYG00000010538)	ENSPNYG00000010525	samm50 (ENSPNYG00000010481)	api5 (ENSPNYG00000010426)	hsd17b12a (ENSPNYG00000010372)	alkbh3 (ENSPNYG00000010362)	si:ch1073-281m9.1 (ENSPNYG00000010327)	ENSPNYG00000010291	CKMT1A (ENSPNYG00000010267) ##22	pdia3 (ENSPNYG00000010218)	ENSPNYG00000010204	rlbp1b (ENSPNYG00000010043)	ABHD2 (ENSPNYG00000009992)	mfge8b (ENSPNYG00000009978)	hapln3 (ENSPNYG00000009966)	ENSPNYG00000009921	ENSPNYG00000009909	PPIP5K1 (ENSPNYG00000009853)	ENSPNYG00000009734	scamp2 (ENSPNYG00000009698)	mpi (ENSPNYG00000009672)	myo9ab (ENSPNYG00000009446)	OAZ2 (ENSPNYG00000009381)	ppib (ENSPNYG00000009306)
Burton s mouthbrooder	MODERN SPECIES	403	PIK3C2A (ENSHBUG00000008983)	nucb2b (ENSHBUG00000008880)	si:dkey-10o6.2 (ENSHBUG00000008853)	ENSHBUG00000008831	ENSHBUG00000008798	tdg.1 (ENSHBUG00000008784)	ENSHBUG00000008755	uqcc6 (ENSHBUG00000008745)	ENSHBUG00000008733	samm50 (ENSHBUG00000008720)	api5 (ENSHBUG00000008673)	hsd17b12a (ENSHBUG00000008619)	alkbh3 (ENSHBUG00000008513)	si:ch1073-281m9.1 (ENSHBUG00000001088)	ENSHBUG00000008487	CKMT1A (ENSHBUG00000000802) ##22	pdia3 (ENSHBUG00000008434)	ENSHBUG00000008380	rlbp1b (ENSHBUG00000008363)	ABHD2 (ENSHBUG00000008349)	mfge8b (ENSHBUG00000008283)	hapln3 (ENSHBUG00000008267)	ENSHBUG00000008251	PPIP5K1 (ENSHBUG00000008112)	ENSHBUG00000007737	ENSHBUG00000007712	scamp2 (ENSHBUG00000007616)	mpi (ENSHBUG00000007587)	ENSHBUG00000007541	myo9ab (ENSHBUG00000007522)	OAZ2 (ENSHBUG00000007425)
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	293	PIK3C2A (ENSNBRG00000015757)	NUCB2 (ENSNBRG00000015817)	si:dkey-10o6.2 (ENSNBRG00000015840)	ENSNBRG00000015860	ENSNBRG00000015919	tdg.1 (ENSNBRG00000015950)	ENSNBRG00000015970	uqcc6 (ENSNBRG00000015995)	ENSNBRG00000016000	samm50 (ENSNBRG00000016019)	api5 (ENSNBRG00000016047)	hsd17b12a (ENSNBRG00000016106)	alkbh3 (ENSNBRG00000016311)	si:ch1073-281m9.1 (ENSNBRG00000016332)	ENSNBRG00000016339	ENSNBRG00000016386 ##22	ENSNBRG00000016392 ##22	pdia3 (ENSNBRG00000016425)	ENSNBRG00000016499	rlbp1b (ENSNBRG00000016510)	ABHD2 (ENSNBRG00000016542)	mfge8b (ENSNBRG00000016591)	hapln3 (ENSNBRG00000016718)	ENSNBRG00000016740	ENSNBRG00000016772	PPIP5K1 (ENSNBRG00000016908)	ENSNBRG00000017064	ENSNBRG00000017099	scamp2 (ENSNBRG00000017179)	mpi (ENSNBRG00000017191)	myo9ab (ENSNBRG00000017220)
Lyretail cichlid	MODERN SPECIES	293	NUCB2 (ENSNBRG00000015817)	si:dkey-10o6.2 (ENSNBRG00000015840)	ENSNBRG00000015860	ENSNBRG00000015919	tdg.1 (ENSNBRG00000015950)	ENSNBRG00000015970	uqcc6 (ENSNBRG00000015995)	ENSNBRG00000016000	samm50 (ENSNBRG00000016019)	api5 (ENSNBRG00000016047)	hsd17b12a (ENSNBRG00000016106)	alkbh3 (ENSNBRG00000016311)	si:ch1073-281m9.1 (ENSNBRG00000016332)	ENSNBRG00000016339	ENSNBRG00000016386 ##22	ENSNBRG00000016392 ##22	pdia3 (ENSNBRG00000016425)	ENSNBRG00000016499	rlbp1b (ENSNBRG00000016510)	ABHD2 (ENSNBRG00000016542)	mfge8b (ENSNBRG00000016591)	hapln3 (ENSNBRG00000016718)	ENSNBRG00000016740	ENSNBRG00000016772	PPIP5K1 (ENSNBRG00000016908)	ENSNBRG00000017064	ENSNBRG00000017099	scamp2 (ENSNBRG00000017179)	mpi (ENSNBRG00000017191)	myo9ab (ENSNBRG00000017220)	OAZ2 (ENSNBRG00000017294)
Sarcopterygii	ANCESTRAL SPECIES	314								ENSGT00950000183076.a.b.b.a.a	ENSGT00390000018319.b.a	ENSGT00390000018319.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000160962	ENSGT00910000144338	ENSGT00940000155425
Coelacanth	MODERN SPECIES	272								CRTC3 (ENSLACG00000000576)	IQGAP1 (ENSLACG00000002923)	ENSLACG00000007067	cart3 (ENSLACG00000008063)	TUBGCP4 (ENSLACG00000008336)	TP53BP1 (ENSLACG00000008674)	MAP1A (ENSLACG00000009498)	PPIP5K1 (ENSLACG00000011206)	ckmt1 (ENSLACG00000012248) ##22	STRC (ENSLACG00000012434)	ENSLACG00000012981	CATSPER2 (ENSLACG00000013125)	PDIA3 (ENSLACG00000013320)	ENSLACG00000013530	ENSLACG00000014082	ENSLACG00000014273	ENSLACG00000014589	SERINC4 (ENSLACG00000014736) ##13	HYPK (ENSLACG00000014927)	MFAP1 (ENSLACG00000014961)	FURIN (ENSLACG00000015086)	FES (ENSLACG00000015709)	MAN2A2 (ENSLACG00000015860)	PRC1 (ENSLACG00000015990)
Tetrapoda	ANCESTRAL SPECIES	161								ENSGT00950000183076.a.b.b.a.a	ENSGT00390000018319.b.a	ENSGT00390000018319.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00950000182957.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT00940000165251
Amniota	ANCESTRAL SPECIES	62							ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000174521	ENSGT00960000190090	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520
Mammalia	ANCESTRAL SPECIES	94											ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Platypus	MODERN SPECIES	19	FBN1 (ENSOANG00000012937)	DUT (ENSOANG00000000332)	SLC12A1 (ENSOANG00000014864)	CTXN2 (ENSOANG00000014863)	MYEF2 (ENSOANG00000007375)	SLC24A5 (ENSOANG00000050257)	ENSOANG00000013111	DMXL2 (ENSOANG00000011034)	CYP19A1 (ENSOANG00000010232)	ENSOANG00000047284	TUBGCP4 (ENSOANG00000011211)	ENSOANG00000011210	ENSOANG00000041995	ENSOANG00000036613	PPIP5K1 (ENSOANG00000020382)	ENSOANG00000012720 ##22	ENSOANG00000051138	CATSPER2 (ENSOANG00000003952)	PDIA3 (ENSOANG00000009688)	ENSOANG00000009687	ENSOANG00000001951 ##13	ENSOANG00000044097	MFAP1 (ENSOANG00000043946)	WDR76 (ENSOANG00000000294)	FRMD5 (ENSOANG00000022351)	GOLM2 (ENSOANG00000028283)	CTDSPL2 (ENSOANG00000003729)	ENSOANG00000007805	SPG11 (ENSOANG00000007806)	ENSOANG00000001538	B2M (ENSOANG00000001539)
Theria	ANCESTRAL SPECIES	24	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523.d	ENSGT00900000143426	ENSGT00940000161523.c	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523.c	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Diprotodontia	ANCESTRAL SPECIES		ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523.c	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	7460																ENSMEUG00000001433 ##22
Wallaby	MODERN SPECIES	7687																ENSMEUG00000004348 ##22	ENSMEUG00000004359
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523.c	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Common wonbat	MODERN SPECIES	1031	TMEM62 (ENSVURG00010006510)	CCNDBP1 (ENSVURG00010006499)	EPB42 (ENSVURG00010006458)	TGM5 (ENSVURG00010006442)	TGM7 (ENSVURG00010006409)	LCMT2 (ENSVURG00010006402)	ENSVURG00010006304	ENSVURG00010006282	ZSCAN29 (ENSVURG00010006267)	TUBGCP4 (ENSVURG00010006244)	TP53BP1 (ENSVURG00010006209)	ENSVURG00010006176	ENSVURG00010006164	ENSVURG00010006149	PPIP5K1 (ENSVURG00010005991)	ENSVURG00010005928 ##22	STRC (ENSVURG00010005917)	CATSPER2 (ENSVURG00010005773)	PDIA3 (ENSVURG00010005736)	ELL3 (ENSVURG00010005699)	SERF2 (ENSVURG00010005681)	ENSVURG00010005666 ##13	HYPK (ENSVURG00010005654)	MFAP1 (ENSVURG00010005645)	WDR76 (ENSVURG00010005630)	FRMD5 (ENSVURG00010005521)	GOLM2 (ENSVURG00010005465)	CTDSPL2 (ENSVURG00010005444)	EIF3J (ENSVURG00010005418)	SPG11 (ENSVURG00010004690)	PATL2 (ENSVURG00010004547)
koala	MODERN SPECIES	135	UBR1 (ENSPCIG00000017944)	TMEM62 (ENSPCIG00000018361)	CCNDBP1 (ENSPCIG00000018360)	EPB42 (ENSPCIG00000018356)	TGM5 (ENSPCIG00000018350)	TGM7 (ENSPCIG00000018345)	LCMT2 (ENSPCIG00000031110)	ADAL (ENSPCIG00000018338)	ZSCAN29 (ENSPCIG00000018336)	ENSPCIG00000018337	TUBGCP4 (ENSPCIG00000018332)	TP53BP1 (ENSPCIG00000018326)	ENSPCIG00000018330	ENSPCIG00000018320	PPIP5K1 (ENSPCIG00000018313)	ENSPCIG00000018305 ##22	STRC (ENSPCIG00000018293)	CATSPER2 (ENSPCIG00000018291)	PDIA3 (ENSPCIG00000018290)	ELL3 (ENSPCIG00000018285)	ENSPCIG00000018282	SERINC4 (ENSPCIG00000018280) ##13	HYPK (ENSPCIG00000018278)	MFAP1 (ENSPCIG00000018276)	WDR76 (ENSPCIG00000018275)	FRMD5 (ENSPCIG00000018274)	GOLM2 (ENSPCIG00000018269)	CTDSPL2 (ENSPCIG00000018267)	ENSPCIG00000018265	SPG11 (ENSPCIG00000018260)	ENSPCIG00000018256
Tasmanian devil	MODERN SPECIES	1	TTBK2 (ENSSHAG00000007879)	CDAN1 (ENSSHAG00000023314)	ENSSHAG00000010014	UBR1 (ENSSHAG00000010117)	TMEM62 (ENSSHAG00000025911)	EPB42 (ENSSHAG00000011681)	TGM5 (ENSSHAG00000011949)	TGM7 (ENSSHAG00000012212)	TUBGCP4 (ENSSHAG00000022739)	ENSSHAG00000030509	ZSCAN29 (ENSSHAG00000012821)	TP53BP1 (ENSSHAG00000013019)	ENSSHAG00000027322	ENSSHAG00000027728	PPIP5K1 (ENSSHAG00000013952)	ENSSHAG00000014135 ##22	ENSSHAG00000014160	CATSPER2 (ENSSHAG00000014399)	PDIA3 (ENSSHAG00000014476)	ELL3 (ENSSHAG00000014557)	SERF2 (ENSSHAG00000025338)	SERINC4 (ENSSHAG00000014605) ##13	ENSSHAG00000031049	ENSSHAG00000014628	WDR76 (ENSSHAG00000014718)	FRMD5 (ENSSHAG00000014835)	GOLM2 (ENSSHAG00000022377)	CTDSPL2 (ENSSHAG00000016577)	EIF3J (ENSSHAG00000026935)	SPG11 (ENSSHAG00000016808)	PATL2 (ENSSHAG00000016963)
Opossum	MODERN SPECIES		ENSMODG00000017861	UBR1 (ENSMODG00000017858)	TMEM62 (ENSMODG00000017853)	CCNDBP1 (ENSMODG00000017851)	EPB42 (ENSMODG00000017847)	TGM5 (ENSMODG00000017839)	TGM7 (ENSMODG00000046174)	LCMT2 (ENSMODG00000017825)	ADAL (ENSMODG00000017822)	ENSMODG00000048702	ENSMODG00000047609	TUBGCP4 (ENSMODG00000017816)	TP53BP1 (ENSMODG00000017806)	MAP1A (ENSMODG00000017797)	PPIP5K1 (ENSMODG00000017788)	ENSMODG00000017776 ##22	STRC (ENSMODG00000017770)	ENSMODG00000017763	PDIA3 (ENSMODG00000017760)	ELL3 (ENSMODG00000017755)	SERF2 (ENSMODG00000017751)	SERINC4 (ENSMODG00000017747) ##13	HYPK (ENSMODG00000017744)	ENSMODG00000017741	WDR76 (ENSMODG00000017738)	FRMD5 (ENSMODG00000017733)	GOLM2 (ENSMODG00000017721)	CTDSPL2 (ENSMODG00000017709)	ENSMODG00000017697	ENSMODG00000017696	SPG11 (ENSMODG00000017693)
Eutheria	ANCESTRAL SPECIES	8	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000168408	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Glires	ANCESTRAL SPECIES	15	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b.e	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Pika	MODERN SPECIES	1522												TUBGCP4 (ENSOPRG00000008260)	TP53BP1 (ENSOPRG00000008283)	MAP1A (ENSOPRG00000008323)	PPIP5K1 (ENSOPRG00000008343)	ENSOPRG00000008379 ##22	STRC (ENSOPRG00000008396)	CATSPER2 (ENSOPRG00000008430)
Rabbit	MODERN SPECIES	8	TTBK2 (ENSOCUG00000011046)	UBR1 (ENSOCUG00000012331)	TMEM62 (ENSOCUG00000017449)	CCNDBP1 (ENSOCUG00000000548)	EPB42 (ENSOCUG00000017459)	TGM5 (ENSOCUG00000000551)	TGM7 (ENSOCUG00000025810)	LCMT2 (ENSOCUG00000007995)	ENSOCUG00000024818	ZSCAN29 (ENSOCUG00000011265)	TUBGCP4 (ENSOCUG00000017326)	TP53BP1 (ENSOCUG00000017337)	MAP1A (ENSOCUG00000005324)	ENSOCUG00000037785	PPIP5K1 (ENSOCUG00000003096)	ENSOCUG00000003106 ##22	STRC (ENSOCUG00000003112)	CATSPER2 (ENSOCUG00000033403)	PDIA3 (ENSOCUG00000001155)	ELL3 (ENSOCUG00000001158)	ENSOCUG00000026332	SERINC4 (ENSOCUG00000001162) ##13	HYPK (ENSOCUG00000001161)	MFAP1 (ENSOCUG00000010712)	WDR76 (ENSOCUG00000010719)	FRMD5 (ENSOCUG00000000664)	GOLM2 (ENSOCUG00000005362)	CTDSPL2 (ENSOCUG00000005366)	EIF3J (ENSOCUG00000005376)	SPG11 (ENSOCUG00000006317)	PATL2 (ENSOCUG00000006339)
Rodentia	ANCESTRAL SPECIES	3	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Hystricomorpha	ANCESTRAL SPECIES	43	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a.n	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.h	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b	ENSGT00690000102227
Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a.n	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891.c	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.h	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000158198	ENSGT00940000159424
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a.n	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891.c	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00910000144347.x	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.h	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000158198
Degu	MODERN SPECIES	43	ENSODEG00000016919	ENSODEG00000016844	CDAN1 (ENSODEG00000016883)	ENSODEG00000016839	UBR1 (ENSODEG00000016879)	TMEM62 (ENSODEG00000016864)	ENSODEG00000017025	TGM5 (ENSODEG00000016333)	TGM7 (ENSODEG00000016365)	ADAL (ENSODEG00000016433)	ZSCAN29 (ENSODEG00000016691)	TUBGCP4 (ENSODEG00000016217)	TP53BP1 (ENSODEG00000016364)	MAP1A (ENSODEG00000016751)	PPIP5K1 (ENSODEG00000016403)	ENSODEG00000016390 ##22	PDIA3 (ENSODEG00000016212)	ENSODEG00000016295	HYPK (ENSODEG00000016700)	MFAP1 (ENSODEG00000016397)	ENSODEG00000016060	FRMD5 (ENSODEG00000016269)	ENSODEG00000020502	ENSODEG00000016724	GOLM2 (ENSODEG00000016663)	ENSODEG00000016525	CTDSPL2 (ENSODEG00000016569)	ENSODEG00000016386	SPG11 (ENSODEG00000016165)	ENSODEG00000016509	ENSODEG00000015913
Long-tailed chinchilla	MODERN SPECIES	123	CDAN1 (ENSCLAG00000012859)	TTBK2 (ENSCLAG00000013416)	UBR1 (ENSCLAG00000008399)	TMEM62 (ENSCLAG00000011063)	CCNDBP1 (ENSCLAG00000010434)	EPB42 (ENSCLAG00000011681)	TGM5 (ENSCLAG00000006699)	TGM7 (ENSCLAG00000008796)	LCMT2 (ENSCLAG00000011823)	ADAL (ENSCLAG00000012788)	ZSCAN29 (ENSCLAG00000009248)	TUBGCP4 (ENSCLAG00000007062)	TP53BP1 (ENSCLAG00000008582)	MAP1A (ENSCLAG00000007250)	PPIP5K1 (ENSCLAG00000008772)	ENSCLAG00000016160 ##22	PDIA3 (ENSCLAG00000007127)	ELL3 (ENSCLAG00000008218)	ENSCLAG00000006897	HYPK (ENSCLAG00000007549)	MFAP1 (ENSCLAG00000010732)	WDR76 (ENSCLAG00000010272)	FRMD5 (ENSCLAG00000013639)	GOLM2 (ENSCLAG00000010634)	ENSCLAG00000013359	EIF3J (ENSCLAG00000017286)	SPG11 (ENSCLAG00000016540)	PATL2 (ENSCLAG00000014407)	ENSCLAG00000007186	B2M (ENSCLAG00000010453)	ARNT2 (ENSCLAG00000015272)
Guinea pig	MODERN SPECIES	10	TTBK2 (ENSCPOG00000013213)	UBR1 (ENSCPOG00000009629)	TMEM62 (ENSCPOG00000033349)	CCNDBP1 (ENSCPOG00000003385)	ENSCPOG00000003390	TGM5 (ENSCPOG00000013438)	TGM7 (ENSCPOG00000013440)	LCMT2 (ENSCPOG00000000059)	ADAL (ENSCPOG00000002337)	ZSCAN29 (ENSCPOG00000001782)	TUBGCP4 (ENSCPOG00000001784)	ENSCPOG00000001787	ENSCPOG00000024235	MAP1A (ENSCPOG00000000886)	PPIP5K1 (ENSCPOG00000001790)	ENSCPOG00000001794 ##22	PDIA3 (ENSCPOG00000008187)	ELL3 (ENSCPOG00000008194)	ENSCPOG00000031483	HYPK (ENSCPOG00000002173)	MFAP1 (ENSCPOG00000033061)	WDR76 (ENSCPOG00000002178)	FRMD5 (ENSCPOG00000006363)	GOLM2 (ENSCPOG00000032860)	CTDSPL2 (ENSCPOG00000024099)	EIF3J (ENSCPOG00000012396)	ENSCPOG00000002915	PATL2 (ENSCPOG00000002922)	B2M (ENSCPOG00000030414)	ARNT2 (ENSCPOG00000012997)	ABHD17C (ENSCPOG00000022314)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000050529	ENSHGLG00000047107	ENSHGLG00000043278	ENSHGLG00000042047	ENSHGLG00000016329	ENSHGLG00000013743	ENSHGLG00000046245	LCMT2 (ENSHGLG00000021255)	ADAL (ENSHGLG00000015821)	ZSCAN29 (ENSHGLG00000012145)	ENSHGLG00000039206	ENSHGLG00000014547	TP53BP1 (ENSHGLG00000010943)	MAP1A (ENSHGLG00000010510)	PPIP5K1 (ENSHGLG00000013903)	ENSHGLG00000018662 ##22	ENSHGLG00000007015	ELL3 (ENSHGLG00000008994)	ENSHGLG00000048162	ENSHGLG00000005915	ENSHGLG00000049634	MFAP1 (ENSHGLG00000007753)	WDR76 (ENSHGLG00000006513)	ENSHGLG00000046216	ENSHGLG00000037354	ENSHGLG00000034821	ENSHGLG00000047086	ENSHGLG00000034268	ENSHGLG00000035229	ENSHGLG00000016955	ENSHGLG00000049925
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000002858	ENSHGLG00000050197	ENSHGLG00000000078	ENSHGLG00000005348	ENSHGLG00000038123	ENSHGLG00000042184	ENSHGLG00000005397	ENSHGLG00000048462	ENSHGLG00000009102	GDPD2 (ENSHGLG00000018925)	KIF4A (ENSHGLG00000007414)	PDZD11 (ENSHGLG00000005255)	P2RY4 (ENSHGLG00000010047)	ENSHGLG00000048751	AWAT1 (ENSHGLG00000015291)	ENSHGLG00000014762 ##22	DGAT2L6 (ENSHGLG00000016954)	ENSHGLG00000017881	AWAT2 (ENSHGLG00000000321)	EDA (ENSHGLG00000000357)	ENSHGLG00000032290	NALF2 (ENSHGLG00000036401)	PJA1 (ENSHGLG00000032531)	EFNB1 (ENSHGLG00000000418)	STARD8 (ENSHGLG00000000450)	YIPF6 (ENSHGLG00000050669)	ENSHGLG00000050762	ENSHGLG00000000120	ENSHGLG00000050877	ENSHGLG00000013918	ENSHGLG00000036627
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000033347	ENSHGLG00000044414	ENSHGLG00000019895	ENSHGLG00000046212	ENSHGLG00000001513	ENSHGLG00000001136	PNN (ENSHGLG00000035633)	ENSHGLG00000005003	ENSHGLG00000005276	ENSHGLG00000004890	ENSHGLG00000004530	ENSHGLG00000004097	ENSHGLG00000045717	ENSHGLG00000047469	ENSHGLG00000003857	ENSHGLG00000003651 ##22	ENSHGLG00000033056	SSTR1 (ENSHGLG00000046762)	ENSHGLG00000019925	TTC6 (ENSHGLG00000000647)	ENSHGLG00000050768	ENSHGLG00000048266	ENSHGLG00000019782	ENSHGLG00000039395	ENSHGLG00000014561	TATDN2 (ENSHGLG00000014225)	GHRL (ENSHGLG00000016347)	ENSHGLG00000033106	SEC13 (ENSHGLG00000016676)	ENSHGLG00000007041	ENSHGLG00000035278
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Marmotini	ANCESTRAL SPECIES	9	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Alpin marmot	MODERN SPECIES	7	UBR1 (ENSMMMG00000018995)	TMEM62 (ENSMMMG00000018944)	CCNDBP1 (ENSMMMG00000018926)	EPB42 (ENSMMMG00000018914)	TGM5 (ENSMMMG00000018903)	TGM7 (ENSMMMG00000018868)	LCMT2 (ENSMMMG00000018863)	ADAL (ENSMMMG00000018830)	ENSMMMG00000018826	ZSCAN29 (ENSMMMG00000018814)	TUBGCP4 (ENSMMMG00000018766)	TP53BP1 (ENSMMMG00000018697)	MAP1A (ENSMMMG00000018613)	ENSMMMG00000018606	PPIP5K1 (ENSMMMG00000018436)	ENSMMMG00000018415 ##22	STRC (ENSMMMG00000018372)	CATSPER2 (ENSMMMG00000018345)	PDIA3 (ENSMMMG00000018324)	ELL3 (ENSMMMG00000018287)	ENSMMMG00000018255	SERINC4 (ENSMMMG00000018211) ##13	HYPK (ENSMMMG00000018203)	MFAP1 (ENSMMMG00000018199)	ENSMMMG00000018185	FRMD5 (ENSMMMG00000018137)	GOLM2 (ENSMMMG00000018044)	CTDSPL2 (ENSMMMG00000018015)	ENSMMMG00000017993	SPG11 (ENSMMMG00000017966)	PATL2 (ENSMMMG00000017944)
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Arctic ground squirrel	MODERN SPECIES	4	UBR1 (ENSUPAG00010012265)	TMEM62 (ENSUPAG00010012249)	CCNDBP1 (ENSUPAG00010012188)	EPB42 (ENSUPAG00010012173)	TGM5 (ENSUPAG00010012161)	TGM7 (ENSUPAG00010012150)	LCMT2 (ENSUPAG00010012148)	ADAL (ENSUPAG00010012022)	ENSUPAG00010012006	ZSCAN29 (ENSUPAG00010011982)	TUBGCP4 (ENSUPAG00010011916)	TP53BP1 (ENSUPAG00010011808)	ENSUPAG00010011798	MAP1A (ENSUPAG00010011785)	PPIP5K1 (ENSUPAG00010010520)	ENSUPAG00010010501 ##22	STRC (ENSUPAG00010010463)	CATSPER2 (ENSUPAG00010010437)	ENSUPAG00010010432	PDIA3 (ENSUPAG00010010414)	ELL3 (ENSUPAG00010010367)	ENSUPAG00010010342	SERINC4 (ENSUPAG00010010300) ##13	HYPK (ENSUPAG00010010283)	MFAP1 (ENSUPAG00010010275)	WDR76 (ENSUPAG00010010229)	FRMD5 (ENSUPAG00010010188)	GOLM2 (ENSUPAG00010010162)	CTDSPL2 (ENSUPAG00010010125)	EIF3J (ENSUPAG00010010111)	SPG11 (ENSUPAG00010010037)
Squirrel	MODERN SPECIES	71	CDAN1 (ENSSTOG00000006305)	TTBK2 (ENSSTOG00000027361)	UBR1 (ENSSTOG00000008907)	TMEM62 (ENSSTOG00000012992)	CCNDBP1 (ENSSTOG00000001030)	EPB42 (ENSSTOG00000001041)	TGM5 (ENSSTOG00000001050)	TGM7 (ENSSTOG00000001064)	LCMT2 (ENSSTOG00000027246)	ADAL (ENSSTOG00000006870)	ZSCAN29 (ENSSTOG00000006892)	TUBGCP4 (ENSSTOG00000006918)	TP53BP1 (ENSSTOG00000006966)	MAP1A (ENSSTOG00000026949)	PPIP5K1 (ENSSTOG00000007074)	ENSSTOG00000006810 ##22	STRC (ENSSTOG00000006829)	CATSPER2 (ENSSTOG00000025459)	PDIA3 (ENSSTOG00000006893)	ELL3 (ENSSTOG00000012181)	ENSSTOG00000021211	SERINC4 (ENSSTOG00000006939) ##13	MFAP1 (ENSSTOG00000006967)	HYPK (ENSSTOG00000006916)	WDR76 (ENSSTOG00000006985)	FRMD5 (ENSSTOG00000007019)	GOLM2 (ENSSTOG00000009014)	CTDSPL2 (ENSSTOG00000002215)	EIF3J (ENSSTOG00000025483)	ENSSTOG00000002225	PATL2 (ENSSTOG00000033848)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005003756	UBR1 (ENSSVLG00005003806)	TMEM62 (ENSSVLG00005003864)	CCNDBP1 (ENSSVLG00005003934)	EPB42 (ENSSVLG00005003990)	TGM5 (ENSSVLG00005004088)	TGM7 (ENSSVLG00005004123)	ENSSVLG00005004147	ADAL (ENSSVLG00005004166)	ZSCAN29 (ENSSVLG00005004207)	TUBGCP4 (ENSSVLG00005004238)	TP53BP1 (ENSSVLG00005004287)	MAP1A (ENSSVLG00005004338)	PPIP5K1 (ENSSVLG00005004405)	ENSSVLG00005004584	ENSSVLG00005004607 ##22	STRC (ENSSVLG00005004652)	CATSPER2 (ENSSVLG00005004713)	PDIA3 (ENSSVLG00005004732)	ELL3 (ENSSVLG00005004750)	ENSSVLG00005004775	SERINC4 (ENSSVLG00005004821) ##13	HYPK (ENSSVLG00005004857)	MFAP1 (ENSSVLG00005004879)	WDR76 (ENSSVLG00005004907)	FRMD5 (ENSSVLG00005004959)	ENSSVLG00005005085	GOLM2 (ENSSVLG00005005117)	CTDSPL2 (ENSSVLG00005005170)	ENSSVLG00005005225	SPG11 (ENSSVLG00005005365)
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Kangaroo rat	MODERN SPECIES	750																ENSDORG00000011567 ##22
Myomorpha	ANCESTRAL SPECIES	33	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Muroidea	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Chinese hamster chok1gshd	MODERN SPECIES	188	Cdan1 (ENSCGRG00001022325)	Ttbk2 (ENSCGRG00001021341)	Ubr1 (ENSCGRG00001020188)	Tmem62 (ENSCGRG00001018826)	Ccndbp1 (ENSCGRG00001014353)	Epb42 (ENSCGRG00001013805)	Tgm5 (ENSCGRG00001012769)	Tgm7 (ENSCGRG00001011196)	Lcmt2 (ENSCGRG00001009861)	Adal (ENSCGRG00001008557)	Zscan29 (ENSCGRG00001017534)	ENSCGRG00001022201	Trp53bp1 (ENSCGRG00001021181)	Map1a (ENSCGRG00001019560)	Ppip5k1 (ENSCGRG00001018749)	Ckmt1 (ENSCGRG00001016944) ##22	Strc (ENSCGRG00001014105)	Catsper2 (ENSCGRG00001024914)	Pdia3 (ENSCGRG00001008721)	Ell3 (ENSCGRG00001006707)	Serf2 (ENSCGRG00001003946)	Hypk (ENSCGRG00001002292)	ENSCGRG00001001008	Wdr76 (ENSCGRG00001023916)	Frmd5 (ENSCGRG00001024339)	Golm2 (ENSCGRG00001015365)	Ctdspl2 (ENSCGRG00001005065)	ENSCGRG00001009334	Spg11 (ENSCGRG00001011033)	Patl2 (ENSCGRG00001010801)	B2M (ENSCGRG00001018239)
Golden Hamster	MODERN SPECIES	631	ENSMAUG00000010298	Cdan1 (ENSMAUG00000019854)	Ttbk2 (ENSMAUG00000020346)	Ubr1 (ENSMAUG00000021451)	Ccndbp1 (ENSMAUG00000008369)	Epb42 (ENSMAUG00000010326)	Tgm5 (ENSMAUG00000019030)	Tgm7 (ENSMAUG00000022210)	Lcmt2 (ENSMAUG00000020500)	Adal (ENSMAUG00000014141)	Zscan29 (ENSMAUG00000009959)	Tubgcp4 (ENSMAUG00000010076)	ENSMAUG00000002657	Map1a (ENSMAUG00000019357)	Ppip5k1 (ENSMAUG00000001229)	Ckmt1 (ENSMAUG00000011221) ##22	Strc (ENSMAUG00000018007)	Catsper2 (ENSMAUG00000021642)	Pdia3 (ENSMAUG00000011249)	Ell3 (ENSMAUG00000019218)	Serf2 (ENSMAUG00000018481)	Serinc4 (ENSMAUG00000020255) ##13	Hypk (ENSMAUG00000011233)	ENSMAUG00000022042	Wdr76 (ENSMAUG00000022124)	Frmd5 (ENSMAUG00000018567)	ENSMAUG00000000797	Golm2 (ENSMAUG00000005066)	Ctdspl2 (ENSMAUG00000015192)	ENSMAUG00000019190	Spg11 (ENSMAUG00000010225)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Northern American deer mouse	MODERN SPECIES	17	Ubr1 (ENSPEMG00000020971)	ENSPEMG00000028396	Tmem62 (ENSPEMG00000022351)	Ccndbp1 (ENSPEMG00000020949)	Epb42 (ENSPEMG00000006650)	Tgm5 (ENSPEMG00000013740)	Tgm7 (ENSPEMG00000015722)	Lcmt2 (ENSPEMG00000010750)	Adal (ENSPEMG00000008207)	Zscan29 (ENSPEMG00000009676)	ENSPEMG00000024486	Tubgcp4 (ENSPEMG00000014219)	Trp53bp1 (ENSPEMG00000016474)	Map1a (ENSPEMG00000000466)	Ppip5k1 (ENSPEMG00000003736)	Ckmt1 (ENSPEMG00000010522) ##22	Strc (ENSPEMG00000012808)	Catsper2 (ENSPEMG00000015421)	Pdia3 (ENSPEMG00000015744)	Ell3 (ENSPEMG00000002558)	Serf2 (ENSPEMG00000013104)	Serinc4 (ENSPEMG00000018055) ##13	Hypk (ENSPEMG00000009555)	ENSPEMG00000014324	ENSPEMG00000014939	Frmd5 (ENSPEMG00000023962)	ENSPEMG00000027467	Golm2 (ENSPEMG00000012792)	Ctdspl2 (ENSPEMG00000010867)	ENSPEMG00000029980	Spg11 (ENSPEMG00000018443)
Prairie vole	MODERN SPECIES	81	Cdan1 (ENSMOCG00000010369)	ENSMOCG00000011900	Ubr1 (ENSMOCG00000018238)	Tmem62 (ENSMOCG00000015932)	Ccndbp1 (ENSMOCG00000018052)	Epb42 (ENSMOCG00000017179)	Tgm5 (ENSMOCG00000015067)	Tgm7 (ENSMOCG00000017916)	Lcmt2 (ENSMOCG00000013497)	Adal (ENSMOCG00000000692)	Zscan29 (ENSMOCG00000001426)	Tubgcp4 (ENSMOCG00000020799)	ENSMOCG00000006337	Map1a (ENSMOCG00000017542)	ENSMOCG00000022888	Ckmt1 (ENSMOCG00000001903) ##22	Strc (ENSMOCG00000014545)	Catsper2 (ENSMOCG00000008206)	Pdia3 (ENSMOCG00000001849)	Ell3 (ENSMOCG00000018455)	ENSMOCG00000002326	Serinc4 (ENSMOCG00000014793) ##13	ENSMOCG00000020172	ENSMOCG00000022884	Wdr76 (ENSMOCG00000013761)	Frmd5 (ENSMOCG00000020852)	Golm2 (ENSMOCG00000013300)	Ctdspl2 (ENSMOCG00000013493)	ENSMOCG00000022505	Spg11 (ENSMOCG00000010865)	Patl2 (ENSMOCG00000015367)
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Mus	ANCESTRAL SPECIES	1	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Mus_A	ANCESTRAL SPECIES		ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a.m	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Mus_C	ANCESTRAL SPECIES		ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT00940000159951.z.a	ENSGT01040000240503.A.a.a.m	ENSGT00390000018400	ENSGT00390000016791
spretus	MODERN SPECIES	11	Cdan1 (MGP_SPRETEiJ_G0025090)	Ttbk2 (MGP_SPRETEiJ_G0025091)	Ubr1 (MGP_SPRETEiJ_G0025092)	Tmem62 (MGP_SPRETEiJ_G0025093)	Ccndbp1 (MGP_SPRETEiJ_G0025094)	Epb42 (MGP_SPRETEiJ_G0025095)	Tgm5 (MGP_SPRETEiJ_G0025096)	Tgm7 (MGP_SPRETEiJ_G0025097)	Lcmt2 (MGP_SPRETEiJ_G0025098)	Adal (MGP_SPRETEiJ_G0025099)	MGP_SPRETEiJ_G0025100	Tubgcp4 (MGP_SPRETEiJ_G0025101)	Trp53bp1 (MGP_SPRETEiJ_G0025102)	Map1a (MGP_SPRETEiJ_G0025103)	Ppip5k1 (MGP_SPRETEiJ_G0025104)	Ckmt1 (MGP_SPRETEiJ_G0025105) ##22	Strc (MGP_SPRETEiJ_G0025106)	Catsper2 (MGP_SPRETEiJ_G0025107)	Pdia3 (MGP_SPRETEiJ_G0025108)	Ell3 (MGP_SPRETEiJ_G0025109)	Serinc4 (MGP_SPRETEiJ_G0025110) ##13	Serf2 (MGP_SPRETEiJ_G0025111)	Hypk (MGP_SPRETEiJ_G0025112)	MGP_SPRETEiJ_G0025113	MGP_SPRETEiJ_G0025114	Frmd5 (MGP_SPRETEiJ_G0025115)	Golm2 (MGP_SPRETEiJ_G0025116)	MGP_SPRETEiJ_G0025117	Ctdspl2 (MGP_SPRETEiJ_G0025118)	MGP_SPRETEiJ_G0025120	Spg11 (MGP_SPRETEiJ_G0025121)
Steppe mouse	MODERN SPECIES	22	Ubr1 (ENSMSIG00000028304)	Tmem62 (ENSMSIG00000028421)	ENSMSIG00000028435	Epb42 (ENSMSIG00000028462)	Tgm5 (ENSMSIG00000028478)	Tgm7 (ENSMSIG00000028483)	ENSMSIG00000028490	Adal (ENSMSIG00000028500)	Zscan29 (ENSMSIG00000028517)	Tubgcp4 (ENSMSIG00000028525)	Trp53bp1 (ENSMSIG00000028574)	ENSMSIG00000028642	Map1a (ENSMSIG00000028647)	Ppip5k1 (ENSMSIG00000028650)	ENSMSIG00000028849	Ckmt1 (ENSMSIG00000028851) ##22	Strc (ENSMSIG00000028866)	Catsper2 (ENSMSIG00000028892)	Pdia3 (ENSMSIG00000028895)	Ell3 (ENSMSIG00000028902)	Serf2 (ENSMSIG00000028916)	Serinc4 (ENSMSIG00000028936) ##13	Hypk (ENSMSIG00000028957)
Mouse	MODERN SPECIES	11	Cdan1 (ENSMUSG00000027284)	Ttbk2 (ENSMUSG00000090100)	Ubr1 (ENSMUSG00000027272)	Tmem62 (ENSMUSG00000054484)	Ccndbp1 (ENSMUSG00000023572)	Epb42 (ENSMUSG00000023216)	Tgm5 (ENSMUSG00000053675)	Tgm7 (ENSMUSG00000079103)	Lcmt2 (ENSMUSG00000074890)	Adal (ENSMUSG00000027259)	Zscan29 (ENSMUSG00000050619)	Tubgcp4 (ENSMUSG00000027263)	Trp53bp1 (ENSMUSG00000043909)	Map1a (ENSMUSG00000027254)	Ppip5k1 (ENSMUSG00000033526)	Ckmt1 (ENSMUSG00000000308) ##22	Strc (ENSMUSG00000033498)	Catsper2 (ENSMUSG00000033486)	Pdia3 (ENSMUSG00000027248)	Ell3 (ENSMUSG00000027246)	Serinc4 (ENSMUSG00000046110) ##13	Serf2 (ENSMUSG00000074884)	Hypk (ENSMUSG00000027245)	Mfap1b (ENSMUSG00000048222)	Mfap1a (ENSMUSG00000068479)	Wdr76 (ENSMUSG00000027242)	Frmd5 (ENSMUSG00000027238)	Golm2 (ENSMUSG00000060227)	Mageb3 (ENSMUSG00000074881)	Ctdspl2 (ENSMUSG00000033411)	Eif3j1 (ENSMUSG00000027236)
Ryukyu mouse	MODERN SPECIES	11	Cdan1 (MGP_CAROLIEiJ_G0024174)	Ttbk2 (MGP_CAROLIEiJ_G0024175)	Ubr1 (MGP_CAROLIEiJ_G0024176)	Tmem62 (MGP_CAROLIEiJ_G0024177)	Ccndbp1 (MGP_CAROLIEiJ_G0024178)	Epb42 (MGP_CAROLIEiJ_G0024179)	Tgm5 (MGP_CAROLIEiJ_G0024180)	Tgm7 (MGP_CAROLIEiJ_G0024181)	Lcmt2 (MGP_CAROLIEiJ_G0024182)	Adal (MGP_CAROLIEiJ_G0024183)	Zscan29 (MGP_CAROLIEiJ_G0024184)	Tubgcp4 (MGP_CAROLIEiJ_G0024185)	Trp53bp1 (MGP_CAROLIEiJ_G0024186)	Map1a (MGP_CAROLIEiJ_G0024187)	Ppip5k1 (MGP_CAROLIEiJ_G0024188)	Ckmt1 (MGP_CAROLIEiJ_G0024189) ##22	Strc (MGP_CAROLIEiJ_G0024190)	Catsper2 (MGP_CAROLIEiJ_G0024191)	Pdia3 (MGP_CAROLIEiJ_G0024192)	Ell3 (MGP_CAROLIEiJ_G0024193)	MGP_CAROLIEiJ_G0024194	Serf2 (MGP_CAROLIEiJ_G0024195)	Hypk (MGP_CAROLIEiJ_G0024196)	Wdr76 (MGP_CAROLIEiJ_G0024197)	Frmd5 (MGP_CAROLIEiJ_G0024198)	Golm2 (MGP_CAROLIEiJ_G0024199)	Ctdspl2 (MGP_CAROLIEiJ_G0024200)	MGP_CAROLIEiJ_G0024201	MGP_CAROLIEiJ_G0024202	MGP_CAROLIEiJ_G0024203	Patl2 (MGP_CAROLIEiJ_G0024205)
Shrew mouse	MODERN SPECIES	16	Cdan1 (MGP_PahariEiJ_G0025616)	Ttbk2 (MGP_PahariEiJ_G0025617)	Ubr1 (MGP_PahariEiJ_G0025618)	Tmem62 (MGP_PahariEiJ_G0025619)	MGP_PahariEiJ_G0025620	Epb42 (MGP_PahariEiJ_G0025621)	Tgm5 (MGP_PahariEiJ_G0025622)	Tgm7 (MGP_PahariEiJ_G0025623)	Lcmt2 (MGP_PahariEiJ_G0025624)	MGP_PahariEiJ_G0025625	Zscan29 (MGP_PahariEiJ_G0025626)	Tubgcp4 (MGP_PahariEiJ_G0025627)	Trp53bp1 (MGP_PahariEiJ_G0025628)	Map1a (MGP_PahariEiJ_G0025629)	Ppip5k1 (MGP_PahariEiJ_G0025630)	Ckmt1 (MGP_PahariEiJ_G0025631) ##22	Strc (MGP_PahariEiJ_G0025632)	Catsper2 (MGP_PahariEiJ_G0025633)	Pdia3 (MGP_PahariEiJ_G0025634)	Ell3 (MGP_PahariEiJ_G0025635)	Serinc4 (MGP_PahariEiJ_G0025636) ##13	Serf2 (MGP_PahariEiJ_G0025637)	Hypk (MGP_PahariEiJ_G0025638)	MGP_PahariEiJ_G0025639	MGP_PahariEiJ_G0025640	Wdr76 (MGP_PahariEiJ_G0025641)	Frmd5 (MGP_PahariEiJ_G0025642)	Golm2 (MGP_PahariEiJ_G0025643)	Ctdspl2 (MGP_PahariEiJ_G0025644)	MGP_PahariEiJ_G0025645	MGP_PahariEiJ_G0025646
Rat	MODERN SPECIES	13	Ubr1 (ENSRNOG00000037207)	Tmem62 (ENSRNOG00000023874)	Ccndbp1 (ENSRNOG00000011379)	Epb42 (ENSRNOG00000011649)	Tgm5 (ENSRNOG00000058755)	Tgm7 (ENSRNOG00000037203)	Adal (ENSRNOG00000069925)	Lcmt2 (ENSRNOG00000043002)	Adal (ENSRNOG00000012166)	ENSRNOG00000066055	Zscan29 (ENSRNOG00000012419)	Tubgcp4 (ENSRNOG00000012798)	Tp53bp1 (ENSRNOG00000013837)	Map1a (ENSRNOG00000014230)	Ppip5k1 (ENSRNOG00000014436)	Ckmt1 (ENSRNOG00000014573) ##22	Strc (ENSRNOG00000014845)	Catsper2 (ENSRNOG00000023064)	Pdia3 (ENSRNOG00000015018)	Ell3 (ENSRNOG00000022868)	Serf2 (ENSRNOG00000064233)	Serinc4 (ENSRNOG00000015499) ##13	Hypk (ENSRNOG00000065122)	Mfap1a (ENSRNOG00000065756)	Wdr76 (ENSRNOG00000022491)	Frmd5 (ENSRNOG00000016189)	Golm2 (ENSRNOG00000016357)	Ctdspl2 (ENSRNOG00000022141)	Eif3j (ENSRNOG00000016459)	Spg11 (ENSRNOG00000021954)	Patl2 (ENSRNOG00000017061)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1793						Tgm7 (ENSNGAG00000010598)	ENSNGAG00000010492	Adal (ENSNGAG00000000430)	ENSNGAG00000000021	Tubgcp4 (ENSNGAG00000017686)	ENSNGAG00000016133	ENSNGAG00000015750	Map1a (ENSNGAG00000015685)	ENSNGAG00000015262	ENSNGAG00000014542	Ckmt1 (ENSNGAG00000014295) ##22	Strc (ENSNGAG00000019184)
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	6157																ENSTBEG00000016773 ##22
Tree shrew	MODERN SPECIES	702			UBR1 (ENSTBEG00000016196)	TMEM62 (ENSTBEG00000016779)	CCNDBP1 (ENSTBEG00000017011)	EPB42 (ENSTBEG00000017088)	TGM5 (ENSTBEG00000009696)	TGM7 (ENSTBEG00000009846)	LCMT2 (ENSTBEG00000010060)	ADAL (ENSTBEG00000010149)	ZSCAN29 (ENSTBEG00000010257)	TUBGCP4 (ENSTBEG00000010405)	TP53BP1 (ENSTBEG00000010870)	MAP1A (ENSTBEG00000011477)	PPIP5K1 (ENSTBEG00000011767)	ENSTBEG00000012104 ##22
Primates	ANCESTRAL SPECIES	2	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT01100000266836	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Mouse lemur	MODERN SPECIES	22	TTBK2 (ENSMICG00000004831)	UBR1 (ENSMICG00000006694)	TMEM62 (ENSMICG00000009940)	CCNDBP1 (ENSMICG00000009950)	EPB42 (ENSMICG00000009962)	TGM5 (ENSMICG00000009975)	TGM7 (ENSMICG00000010009)	ENSMICG00000042929	ADAL (ENSMICG00000010039)	ZSCAN29 (ENSMICG00000010051)	TUBGCP4 (ENSMICG00000010059)	TP53BP1 (ENSMICG00000010077)	MAP1A (ENSMICG00000010101)	PPIP5K1 (ENSMICG00000010125)	ENSMICG00000042348	ENSMICG00000017682 ##22	STRC (ENSMICG00000010153)	ENSMICG00000036321	ENSMICG00000031659	ENSMICG00000048141	PDIA3 (ENSMICG00000000116)	ELL3 (ENSMICG00000030708)	ENSMICG00000035958	SERINC4 (ENSMICG00000010181) ##13	ENSMICG00000027164	MFAP1 (ENSMICG00000010193)	WDR76 (ENSMICG00000027347)	FRMD5 (ENSMICG00000010203)	ENSMICG00000007175	GOLM2 (ENSMICG00000027194)	ENSMICG00000036371
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT01100000266836	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Coquerels sifaka	MODERN SPECIES	424	TTBK2 (ENSPCOG00000026591)	UBR1 (ENSPCOG00000005237)	TMEM62 (ENSPCOG00000027681)	ENSPCOG00000019674	EPB42 (ENSPCOG00000017831)	TGM5 (ENSPCOG00000016247)	TGM7 (ENSPCOG00000026659)	ENSPCOG00000028003	ADAL (ENSPCOG00000015053)	ZSCAN29 (ENSPCOG00000022057)	TUBGCP4 (ENSPCOG00000024024)	TP53BP1 (ENSPCOG00000014845)	MAP1A (ENSPCOG00000022496)	PPIP5K1 (ENSPCOG00000021519)	ENSPCOG00000021230	ENSPCOG00000014257 ##22	STRC (ENSPCOG00000020841)	CATSPER2 (ENSPCOG00000027449)	PDIA3 (ENSPCOG00000020500)	ELL3 (ENSPCOG00000025304)	ENSPCOG00000026585	SERINC4 (ENSPCOG00000017964) ##13	ENSPCOG00000000081	HYPK (ENSPCOG00000013381)	MFAP1 (ENSPCOG00000027336)	WDR76 (ENSPCOG00000017495)	FRMD5 (ENSPCOG00000015347)	GOLM2 (ENSPCOG00000020622)	CTDSPL2 (ENSPCOG00000027804)	EIF3J (ENSPCOG00000021934)	SPG11 (ENSPCOG00000017523)
Greater bamboo lemur	MODERN SPECIES	253	TTBK2 (ENSPSMG00000007748)	UBR1 (ENSPSMG00000007841)	TMEM62 (ENSPSMG00000007867)	CCNDBP1 (ENSPSMG00000007920)	EPB42 (ENSPSMG00000007991)	TGM5 (ENSPSMG00000008039)	TGM7 (ENSPSMG00000008066)	ADAL (ENSPSMG00000008103)	ZSCAN29 (ENSPSMG00000008143)	TUBGCP4 (ENSPSMG00000008295)	TP53BP1 (ENSPSMG00000008522)	MAP1A (ENSPSMG00000008633)	ENSPSMG00000008642	PPIP5K1 (ENSPSMG00000008854)	ENSPSMG00000009077	ENSPSMG00000009110 ##22	STRC (ENSPSMG00000009149)	ENSPSMG00000009160
Bushbaby	MODERN SPECIES	165	CDAN1 (ENSOGAG00000005191)	TTBK2 (ENSOGAG00000005193)	UBR1 (ENSOGAG00000005196)	ENSOGAG00000005207	CCNDBP1 (ENSOGAG00000011162)	EPB42 (ENSOGAG00000011165)	TGM5 (ENSOGAG00000005213)	TGM7 (ENSOGAG00000000124)	LCMT2 (ENSOGAG00000000126)	ADAL (ENSOGAG00000000127)	ENSOGAG00000000128	TUBGCP4 (ENSOGAG00000000129)	TP53BP1 (ENSOGAG00000000130)	MAP1A (ENSOGAG00000025045)	PPIP5K1 (ENSOGAG00000006084)	ENSOGAG00000006092 ##22	STRC (ENSOGAG00000006099)	CATSPER2 (ENSOGAG00000006112)	PDIA3 (ENSOGAG00000004298)	ENSOGAG00000028977	ENSOGAG00000032779	HYPK (ENSOGAG00000010201)	MFAP1 (ENSOGAG00000010206)	WDR76 (ENSOGAG00000028376)	FRMD5 (ENSOGAG00000002584)	GOLM2 (ENSOGAG00000002587)	ENSOGAG00000034831	CTDSPL2 (ENSOGAG00000004689)	EIF3J (ENSOGAG00000004694)	SPG11 (ENSOGAG00000004699)	PATL2 (ENSOGAG00000004709)
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Tarsier	MODERN SPECIES	4704							TGM7 (ENSTSYG00000004411)	ENSTSYG00000030899	ADAL (ENSTSYG00000000131)	ZSCAN29 (ENSTSYG00000004828)	TUBGCP4 (ENSTSYG00000004829)	TP53BP1 (ENSTSYG00000004830)	MAP1A (ENSTSYG00000032667)	ENSTSYG00000031237	PPIP5K1 (ENSTSYG00000004832)	ENSTSYG00000007318 ##22	STRC (ENSTSYG00000007335)	CATSPER2 (ENSTSYG00000025449)	PDIA3 (ENSTSYG00000014518)	ELL3 (ENSTSYG00000014523)	SERF2 (ENSTSYG00000019357)	SERINC4 (ENSTSYG00000013460) ##13	ENSTSYG00000035325	MFAP1 (ENSTSYG00000005286)	WDR76 (ENSTSYG00000011976)	FRMD5 (ENSTSYG00000011982)
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791	ENSGT00520000055649.b
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d	ENSGT01050000244866.A.a.b.b	ENSGT01090000262098	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425.i.a.a	ENSGT00940000161615	ENSGT00910000144347.w.a.a.a	ENSGT00910000148825	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.bb.a	ENSGT00390000016791
Cebidae	ANCESTRAL SPECIES	29	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d	ENSGT01050000244866.A.a.b.b	ENSGT01090000262098	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425.i.b	ENSGT00940000161615	ENSGT00910000144347.w.a.a.a	ENSGT00910000148825	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.bb.a.a	ENSGT00390000016791
Cebidae_a	ANCESTRAL SPECIES	52	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d	ENSGT01050000244866.A.a.b.b	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425.i.b	ENSGT00940000161615	ENSGT00910000144347.w.a.a.a	ENSGT00910000148825	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.bb.a.a	ENSGT00390000016791
Bolivian squirrel monkey	MODERN SPECIES	73	TTBK2 (ENSSBOG00000033050)	UBR1 (ENSSBOG00000023816)	TMEM62 (ENSSBOG00000030788)	CCNDBP1 (ENSSBOG00000019422)	EPB42 (ENSSBOG00000030833)	TGM5 (ENSSBOG00000036260)	ENSSBOG00000036153	TGM7 (ENSSBOG00000025227)	ADAL (ENSSBOG00000031382)	ENSSBOG00000028840	ZSCAN29 (ENSSBOG00000034742)	TUBGCP4 (ENSSBOG00000023107)	TP53BP1 (ENSSBOG00000031788)	MAP1A (ENSSBOG00000028298)	PPIP5K1 (ENSSBOG00000036037)	ENSSBOG00000021453 ##22	STRC (ENSSBOG00000029019)	CATSPER2 (ENSSBOG00000025113)	PDIA3 (ENSSBOG00000030467)	ELL3 (ENSSBOG00000026716)	ENSSBOG00000034559	ENSSBOG00000034005	SERINC4 (ENSSBOG00000027923) ##13	ENSSBOG00000019106	MFAP1 (ENSSBOG00000023131)	WDR76 (ENSSBOG00000029737)	FRMD5 (ENSSBOG00000022954)	GOLM2 (ENSSBOG00000025616)	CTDSPL2 (ENSSBOG00000036246)	ENSSBOG00000035282	SPG11 (ENSSBOG00000031896)
Capuchin	MODERN SPECIES	9		UBR1 (ENSCCAG00000033728)	TMEM62 (ENSCCAG00000026120)	CCNDBP1 (ENSCCAG00000026005)	EPB42 (ENSCCAG00000027076)	ENSCCAG00000021137	TGM5 (ENSCCAG00000029280)	TGM7 (ENSCCAG00000033687)	ADAL (ENSCCAG00000030497)	ZSCAN29 (ENSCCAG00000035753)	TUBGCP4 (ENSCCAG00000028093)	TP53BP1 (ENSCCAG00000025372)	MAP1A (ENSCCAG00000019277)	ENSCCAG00000029454	PPIP5K1 (ENSCCAG00000032121)	ENSCCAG00000020622 ##22	STRC (ENSCCAG00000034656)	CATSPER2 (ENSCCAG00000026150)	PDIA3 (ENSCCAG00000030244)	ELL3 (ENSCCAG00000012316)	ENSCCAG00000035655	SERINC4 (ENSCCAG00000026023) ##13	HYPK (ENSCCAG00000024826)	MFAP1 (ENSCCAG00000036634)	WDR76 (ENSCCAG00000032447)	FRMD5 (ENSCCAG00000033220)	ENSCCAG00000024066	GOLM2 (ENSCCAG00000023648)	CTDSPL2 (ENSCCAG00000021587)	EIF3J (ENSCCAG00000028410)	SPG11 (ENSCCAG00000035886)
Marmoset	MODERN SPECIES	1	UBR1 (ENSCJAG00000003007)	ENSCJAG00000078183 ##20	TMEM62 (ENSCJAG00000002999)	ENSCJAG00000073246	CCNDBP1 (ENSCJAG00000002983)	EPB42 (ENSCJAG00000037326)	TGM5 (ENSCJAG00000032332)	TGM7 (ENSCJAG00000002937)	ENSCJAG00000046366	ADAL (ENSCJAG00000002923)	ZSCAN29 (ENSCJAG00000002903)	TUBGCP4 (ENSCJAG00000002852)	TP53BP1 (ENSCJAG00000002786)	MAP1A (ENSCJAG00000002767)	PPIP5K1 (ENSCJAG00000002715)	ENSCJAG00000002677 ##22	STRC (ENSCJAG00000002654)	CATSPER2 (ENSCJAG00000037831)	PDIA3 (ENSCJAG00000002591)	ELL3 (ENSCJAG00000002572)	ENSCJAG00000002569	ENSCJAG00000022274	SERINC4 (ENSCJAG00000002552) ##13	ENSCJAG00000002541	MFAP1 (ENSCJAG00000002529)	WDR76 (ENSCJAG00000002506)	FRMD5 (ENSCJAG00000002478)	ENSCJAG00000022189	GOLM2 (ENSCJAG00000002443)	ENSCJAG00000073895	CTDSPL2 (ENSCJAG00000002423)
Mas night monkey	MODERN SPECIES	664	TTBK2 (ENSANAG00000021335)	UBR1 (ENSANAG00000035598)	TMEM62 (ENSANAG00000025816)	CCNDBP1 (ENSANAG00000030777)	EPB42 (ENSANAG00000037269)	TGM5 (ENSANAG00000030227)	TGM7 (ENSANAG00000037526)	ENSANAG00000003557	ADAL (ENSANAG00000024867)	ZSCAN29 (ENSANAG00000030603)	TUBGCP4 (ENSANAG00000027500)	TP53BP1 (ENSANAG00000009073)	MAP1A (ENSANAG00000032894)	PPIP5K1 (ENSANAG00000031948)	ENSANAG00000008784	ENSANAG00000038373 ##22	STRC (ENSANAG00000032033)	ENSANAG00000020927	ENSANAG00000019539	ELL3 (ENSANAG00000005795)	ENSANAG00000026775	ENSANAG00000034308	ENSANAG00000028665	SERINC4 (ENSANAG00000036538) ##13	HYPK (ENSANAG00000023281)	MFAP1 (ENSANAG00000029657)	WDR76 (ENSANAG00000007845)	FRMD5 (ENSANAG00000020974)	ENSANAG00000010524	GOLM2 (ENSANAG00000027081)	ENSANAG00000018212
Catarrhini	ANCESTRAL SPECIES	20	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.o.b	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791	ENSGT00520000055649.b
Gibbon	MODERN SPECIES	21	CCNDBP1 (ENSNLEG00000004738)	EPB42 (ENSNLEG00000004834)	TGM5 (ENSNLEG00000004887)	ENSNLEG00000032424	TGM7 (ENSNLEG00000004914)	ADAL (ENSNLEG00000004929)	ENSNLEG00000033386	ZSCAN29 (ENSNLEG00000004938)	TUBGCP4 (ENSNLEG00000004950)	TP53BP1 (ENSNLEG00000005009)	MAP1A (ENSNLEG00000005097)	ENSNLEG00000032699	ENSNLEG00000032558	ENSNLEG00000031754	PPIP5K1 (ENSNLEG00000005103)	ENSNLEG00000005279 ##22	STRC (ENSNLEG00000005320)	ENSNLEG00000028778	CATSPER2 (ENSNLEG00000005346)	PDIA3 (ENSNLEG00000005364)	ELL3 (ENSNLEG00000005428)	ENSNLEG00000032963	SERINC4 (ENSNLEG00000005462) ##13	HYPK (ENSNLEG00000029564)	MFAP1 (ENSNLEG00000028568)	WDR76 (ENSNLEG00000005497)	ENSNLEG00000033470	FRMD5 (ENSNLEG00000005512)	GOLM2 (ENSNLEG00000005533)	CTDSPL2 (ENSNLEG00000005543)	EIF3J (ENSNLEG00000005568)
Hominidae	ANCESTRAL SPECIES	22	ENSGT00440000038181.eb.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.o.a	ENSGT00910000144338.o.b	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791
Orangutan	MODERN SPECIES	6	TTBK2 (ENSPPYG00000006404)	UBR1 (ENSPPYG00000006405)	ENSPPYG00000040780	TMEM62 (ENSPPYG00000029488)	CCNDBP1 (ENSPPYG00000006406)	EPB42 (ENSPPYG00000006407)	TGM5 (ENSPPYG00000006408)	TGM7 (ENSPPYG00000006409)	ENSPPYG00000039540	ADAL (ENSPPYG00000006411)	ZSCAN29 (ENSPPYG00000006412)	TUBGCP4 (ENSPPYG00000006413)	TP53BP1 (ENSPPYG00000006414)	MAP1A (ENSPPYG00000006415)	PPIP5K1 (ENSPPYG00000006416)	ENSPPYG00000029827 ##22	STRC (ENSPPYG00000006420)	ENSPPYG00000006418	ENSPPYG00000036043	CATSPER2 (ENSPPYG00000033999)	PDIA3 (ENSPPYG00000006421)	ELL3 (ENSPPYG00000006422)	SERF2 (ENSPPYG00000039227)	SERINC4 (ENSPPYG00000006425) ##13	HYPK (ENSPPYG00000006424)	MFAP1 (ENSPPYG00000006426)	WDR76 (ENSPPYG00000006427)	FRMD5 (ENSPPYG00000029898)	ENSPPYG00000041352	GOLM2 (ENSPPYG00000006428)	CTDSPL2 (ENSPPYG00000006429)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00390000016216	ENSGT00900000141074.e.a.b.b.b.a	ENSGT00390000018016.c	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.o.a	ENSGT00910000144338.o.b	ENSGT00940000155425.k	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000163842.a.a.a	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	6	RPS3A (ENSGGOG00000022640)	ENSGGOG00000038492	TMEM62 (ENSGGOG00000006542)	ENSGGOG00000036568	CCNDBP1 (ENSGGOG00000028557)	ENSGGOG00000006546	EPB42 (ENSGGOG00000006553)	TGM5 (ENSGGOG00000006555)	TGM7 (ENSGGOG00000007605)	ADAL (ENSGGOG00000015145)	ZSCAN29 (ENSGGOG00000002879)	TUBGCP4 (ENSGGOG00000002882)	TP53BP1 (ENSGGOG00000002588)	MAP1A (ENSGGOG00000004634)	ENSGGOG00000039820	ENSGGOG00000004651 ##22	STRC (ENSGGOG00000004658)	CATSPER2 (ENSGGOG00000006175)	ENSGGOG00000014417	ENSGGOG00000004640	ENSGGOG00000042200 ##22	ENSGGOG00000028374	ENSGGOG00000043668	ENSGGOG00000023440	ELL3 (ENSGGOG00000013225)	ENSGGOG00000041470	SERINC4 (ENSGGOG00000014797) ##13	HYPK (ENSGGOG00000014809)	MFAP1 (ENSGGOG00000006244)	WDR76 (ENSGGOG00000006251)	FRMD5 (ENSGGOG00000017045)
Gorilla	MODERN SPECIES	6	ENSGGOG00000006546	EPB42 (ENSGGOG00000006553)	TGM5 (ENSGGOG00000006555)	TGM7 (ENSGGOG00000007605)	ADAL (ENSGGOG00000015145)	ZSCAN29 (ENSGGOG00000002879)	TUBGCP4 (ENSGGOG00000002882)	TP53BP1 (ENSGGOG00000002588)	MAP1A (ENSGGOG00000004634)	ENSGGOG00000039820	ENSGGOG00000004651 ##22	STRC (ENSGGOG00000004658)	CATSPER2 (ENSGGOG00000006175)	ENSGGOG00000014417	ENSGGOG00000004640	ENSGGOG00000042200 ##22	ENSGGOG00000028374	ENSGGOG00000043668	ENSGGOG00000023440	ELL3 (ENSGGOG00000013225)	ENSGGOG00000041470	SERINC4 (ENSGGOG00000014797) ##13	HYPK (ENSGGOG00000014809)	MFAP1 (ENSGGOG00000006244)	WDR76 (ENSGGOG00000006251)	FRMD5 (ENSGGOG00000017045)	ENSGGOG00000041519	GOLM2 (ENSGGOG00000022225)	CTDSPL2 (ENSGGOG00000007377)	EIF3J (ENSGGOG00000000548)	SPG11 (ENSGGOG00000011834)
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00390000016216	ENSGT00900000141074.e.a.b.b.b.a	ENSGT00390000018016.c	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.o.a	ENSGT00910000144338.o.b	ENSGT00940000155425.k	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000163842.a.a.a	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb
Human	DUPLICATION
Human	MODERN SPECIES	6	TMEM62 (ENSG00000137842)	CCNDBP1 (ENSG00000166946)	EPB42 (ENSG00000166947)	TGM5 (ENSG00000104055)	TGM7 (ENSG00000159495)	LCMT2 (ENSG00000168806)	ADAL (ENSG00000168803)	ZSCAN29 (ENSG00000140265)	TUBGCP4 (ENSG00000137822)	TP53BP1 (ENSG00000067369)	MAP1A (ENSG00000166963)	PPIP5K1 (ENSG00000168781)	CKMT1B (ENSG00000237289) ##22	STRC (ENSG00000242866)	CATSPER2 (ENSG00000166762)	CKMT1A (ENSG00000223572) ##22	PDIA3 (ENSG00000167004)	ELL3 (ENSG00000128886)	SERF2 (ENSG00000140264)	SERINC4 (ENSG00000184716) ##13	HYPK (ENSG00000242028)	MFAP1 (ENSG00000140259)	WDR76 (ENSG00000092470)	FRMD5 (ENSG00000171877)	GOLM2 (ENSG00000166734)	CTDSPL2 (ENSG00000137770)	EIF3J (ENSG00000104131)	SPG11 (ENSG00000104133)	PATL2 (ENSG00000229474)	B2M (ENSG00000166710)	TRIM69 (ENSG00000185880)
Human	MODERN SPECIES	6	CDAN1 (ENSG00000140326)	TTBK2 (ENSG00000128881)	UBR1 (ENSG00000159459)	TMEM62 (ENSG00000137842)	CCNDBP1 (ENSG00000166946)	EPB42 (ENSG00000166947)	TGM5 (ENSG00000104055)	TGM7 (ENSG00000159495)	LCMT2 (ENSG00000168806)	ADAL (ENSG00000168803)	ZSCAN29 (ENSG00000140265)	TUBGCP4 (ENSG00000137822)	TP53BP1 (ENSG00000067369)	MAP1A (ENSG00000166963)	PPIP5K1 (ENSG00000168781)	CKMT1B (ENSG00000237289) ##22	STRC (ENSG00000242866)	CATSPER2 (ENSG00000166762)	CKMT1A (ENSG00000223572) ##22	PDIA3 (ENSG00000167004)	ELL3 (ENSG00000128886)	SERF2 (ENSG00000140264)	SERINC4 (ENSG00000184716) ##13	HYPK (ENSG00000242028)	MFAP1 (ENSG00000140259)	WDR76 (ENSG00000092470)	FRMD5 (ENSG00000171877)	GOLM2 (ENSG00000166734)	CTDSPL2 (ENSG00000137770)	EIF3J (ENSG00000104131)	SPG11 (ENSG00000104133)
Pan	ANCESTRAL SPECIES	20	ENSGT00440000038181.eb.a.b	ENSGT00390000016216	ENSGT00900000141074.e.a.b.b.b.a	ENSGT00390000018016.c	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b.j	ENSGT00910000144338.o.a	ENSGT00950000183254	ENSGT00950000182957.a.a.b.i	ENSGT00910000144338.o.b	ENSGT00940000155425.k	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000163842.a.a.a	ENSGT00530000063675.a.c
Chimpanzee	DUPLICATION
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	6	UBR1 (ENSPTRG00000006985)	ENSPTRG00000052090	ENSPTRG00000044632	TMEM62 (ENSPTRG00000006986)	CCNDBP1 (ENSPTRG00000006987)	EPB42 (ENSPTRG00000006988)	TGM5 (ENSPTRG00000006989)	ENSPTRG00000052524	TGM7 (ENSPTRG00000006990)	ADAL (ENSPTRG00000006991)	ZSCAN29 (ENSPTRG00000006992)	TUBGCP4 (ENSPTRG00000006993)	TP53BP1 (ENSPTRG00000006994)	MAP1A (ENSPTRG00000006995)	PPIP5K1 (ENSPTRG00000022996)	ENSPTRG00000052429 ##22	ENSPTRG00000006998	ENSPTRG00000006999	ENSPTRG00000050120	ENSPTRG00000047183	ENSPTRG00000044148 ##22	ENSPTRG00000048910	ENSPTRG00000045098	PDIA3 (ENSPTRG00000007002)	ELL3 (ENSPTRG00000007003)	SERF2 (ENSPTRG00000007004)	SERINC4 (ENSPTRG00000007005) ##13	HYPK (ENSPTRG00000038721)	MFAP1 (ENSPTRG00000007006)	WDR76 (ENSPTRG00000007007)	FRMD5 (ENSPTRG00000007008)
Chimpanzee	MODERN SPECIES	726																ENSPTRG00000047722 ##22	ENSPTRG00000045996	ENSPTRG00000051408	ENSPTRG00000045547
Chimpanzee	MODERN SPECIES	6	EPB42 (ENSPTRG00000006988)	TGM5 (ENSPTRG00000006989)	ENSPTRG00000052524	TGM7 (ENSPTRG00000006990)	ADAL (ENSPTRG00000006991)	ZSCAN29 (ENSPTRG00000006992)	TUBGCP4 (ENSPTRG00000006993)	TP53BP1 (ENSPTRG00000006994)	MAP1A (ENSPTRG00000006995)	PPIP5K1 (ENSPTRG00000022996)	ENSPTRG00000052429 ##22	ENSPTRG00000006998	ENSPTRG00000006999	ENSPTRG00000050120	ENSPTRG00000047183	ENSPTRG00000044148 ##22	ENSPTRG00000048910	ENSPTRG00000045098	PDIA3 (ENSPTRG00000007002)	ELL3 (ENSPTRG00000007003)	SERF2 (ENSPTRG00000007004)	SERINC4 (ENSPTRG00000007005) ##13	HYPK (ENSPTRG00000038721)	MFAP1 (ENSPTRG00000007006)	WDR76 (ENSPTRG00000007007)	FRMD5 (ENSPTRG00000007008)	ENSPTRG00000049283	GOLM2 (ENSPTRG00000007010)	CTDSPL2 (ENSPTRG00000007013)	EIF3J (ENSPTRG00000051845)	SPG11 (ENSPTRG00000007016)
Bonobo	MODERN SPECIES	89																ENSPPAG00000000575 ##22
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791	ENSGT00520000055649.b
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.m.a	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791	ENSGT00520000055649.b
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	18	CDAN1 (ENSCSAG00000008857)	TTBK2 (ENSCSAG00000008870)	UBR1 (ENSCSAG00000008887)	TMEM62 (ENSCSAG00000008895)	CCNDBP1 (ENSCSAG00000008900)	EPB42 (ENSCSAG00000008941)	TGM5 (ENSCSAG00000009003)	TGM7 (ENSCSAG00000009052)	LCMT2 (ENSCSAG00000019749)	ADAL (ENSCSAG00000009069)	ZSCAN29 (ENSCSAG00000009079)	TUBGCP4 (ENSCSAG00000009094)	TP53BP1 (ENSCSAG00000009121)	MAP1A (ENSCSAG00000009132)	ENSCSAG00000009247	ENSCSAG00000009293 ##22	STRC (ENSCSAG00000009334)	CATSPER2 (ENSCSAG00000009397)	PDIA3 (ENSCSAG00000009419)	ELL3 (ENSCSAG00000009467)	ENSCSAG00000009475	SERINC4 (ENSCSAG00000009484) ##13	ENSCSAG00000009494	MFAP1 (ENSCSAG00000009498)	WDR76 (ENSCSAG00000009507)	FRMD5 (ENSCSAG00000009559)	GOLM2 (ENSCSAG00000009572)	CTDSPL2 (ENSCSAG00000009580)	PATL2 (ENSCSAG00000009601)	B2M (ENSCSAG00000009613)	TRIM69 (ENSCSAG00000009629)
Vervet Monkey	MODERN SPECIES	149																ENSCSAG00000018381 ##22
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.m.a	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT00950000182878.b.a.c.a.a.a.a.c.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791
Cercopithecinae_b	ANCESTRAL SPECIES	30	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT01090000262098	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.m.a	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT00950000182878.b.a.c.a.a.a.a.c.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791
Cercopithecinae_d	ANCESTRAL SPECIES	69	ENSGT00440000038181.eb.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00950000183254	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.m.a	ENSGT00910000148134
Sooty mangabey	MODERN SPECIES	434	EPB42 (ENSCATG00000030896)	TGM5 (ENSCATG00000031051)	TGM7 (ENSCATG00000033311)	ADAL (ENSCATG00000022367)	ZSCAN29 (ENSCATG00000018270)	TUBGCP4 (ENSCATG00000033041)	TP53BP1 (ENSCATG00000032845)	MAP1A (ENSCATG00000022589)	ENSCATG00000031676	ENSCATG00000041154	STRC (ENSCATG00000029454)	ENSCATG00000040325	ENSCATG00000041041	ENSCATG00000042776	ENSCATG00000042906	ENSCATG00000043760 ##22
Drill	DUPLICATION
Drill	MODERN SPECIES	24																ENSMLEG00000028898 ##22
Drill	MODERN SPECIES	614													STRC (ENSMLEG00000039325)	ENSMLEG00000029022	ENSMLEG00000031104	ENSMLEG00000031680 ##22
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	17	PATL2 (ENSPANG00000018026)	SPG11 (ENSPANG00000018025)	EIF3J (ENSPANG00000018029)	CTDSPL2 (ENSPANG00000018028)	GOLM2 (ENSPANG00000018064)	FRMD5 (ENSPANG00000018063)	WDR76 (ENSPANG00000018062)	MFAP1 (ENSPANG00000018103)	HYPK (ENSPANG00000018102)	SERINC4 (ENSPANG00000018101) ##13	ENSPANG00000018110	ELL3 (ENSPANG00000018145)	PDIA3 (ENSPANG00000018143)	ENSPANG00000037431	ENSPANG00000036961	ENSPANG00000018276 ##22	ENSPANG00000043530	ENSPANG00000039459	ENSPANG00000031176	ENSPANG00000050259	MAP1A (ENSPANG00000018441)	TP53BP1 (ENSPANG00000018477)	TUBGCP4 (ENSPANG00000018476)	ZSCAN29 (ENSPANG00000018475)	ADAL (ENSPANG00000018488)	ENSPANG00000029713	TGM7 (ENSPANG00000018487)	TGM5 (ENSPANG00000018486)	EPB42 (ENSPANG00000018495)	CCNDBP1 (ENSPANG00000018494)	TMEM62 (ENSPANG00000018513)
Olive baboon	MODERN SPECIES	476																CKMT1B (ENSPANG00000018217) ##22
Macaca	ANCESTRAL SPECIES	1	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT00390000003582.e.d.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a.d	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.m.a	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT00910000144347.w.b.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT00950000182878.b.a.c.a.a.a.a.c.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00440000038181.eb.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a.d	ENSGT00910000144338.m.a	ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338.m.b	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.w.a	ENSGT00390000008502.g	ENSGT01030000234623.a.b.b ##13	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791.n	ENSGT00390000016791.m.a
Rhesus	MODERN SPECIES	17	TTBK2 (ENSMMUG00000010036)	UBR1 (ENSMMUG00000006498)	ENSMMUG00000055926	TMEM62 (ENSMMUG00000006507)	CCNDBP1 (ENSMMUG00000022253)	EPB42 (ENSMMUG00000022255)	TGM5 (ENSMMUG00000022256)	TGM7 (ENSMMUG00000022251)	LCMT2 (ENSMMUG00000055498)	ADAL (ENSMMUG00000017067)	ZSCAN29 (ENSMMUG00000017070)	TUBGCP4 (ENSMMUG00000017076)	TP53BP1 (ENSMMUG00000017078)	MAP1A (ENSMMUG00000007255)	PPIP5K1 (ENSMMUG00000007860)	ENSMMUG00000007870 ##22	STRC (ENSMMUG00000021840)	ENSMMUG00000029700	PDIA3 (ENSMMUG00000001682)	ENSMMUG00000057376	ELL3 (ENSMMUG00000001683)	ENSMMUG00000022770	HYPK (ENSMMUG00000022768)	ENSMMUG00000051239	MFAP1 (ENSMMUG00000022773)	WDR76 (ENSMMUG00000022774)	FRMD5 (ENSMMUG00000022777)	GOLM2 (ENSMMUG00000006676)	CTDSPL2 (ENSMMUG00000016742)	EIF3J (ENSMMUG00000014288)	SPG11 (ENSMMUG00000014291)
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000048065	ENSMFAG00000001582	TMEM62 (ENSMFAG00000044596)	CCNDBP1 (ENSMFAG00000031199)	EPB42 (ENSMFAG00000043159)	TGM5 (ENSMFAG00000041459)	ENSMFAG00000060055	TGM7 (ENSMFAG00000038051)	ENSMFAG00000046318	ADAL (ENSMFAG00000026391)	ZSCAN29 (ENSMFAG00000000216)	TUBGCP4 (ENSMFAG00000033642)	TP53BP1 (ENSMFAG00000002945)	MAP1A (ENSMFAG00000001708)	ENSMFAG00000000656	ENSMFAG00000027932 ##22	STRC (ENSMFAG00000045628)	ENSMFAG00000044589	ENSMFAG00000061097	PDIA3 (ENSMFAG00000001972)	ENSMFAG00000056417	ENSMFAG00000037924	ENSMFAG00000055204	ELL3 (ENSMFAG00000043418)	ENSMFAG00000033890	HYPK (ENSMFAG00000057677)	SERINC4 (ENSMFAG00000034158) ##13	MFAP1 (ENSMFAG00000041549)	WDR76 (ENSMFAG00000045762)	GOLM2 (ENSMFAG00000030145)	CTDSPL2 (ENSMFAG00000038614)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	77	TTBK2 (ENSMNEG00000028768)	UBR1 (ENSMNEG00000036851)	TMEM62 (ENSMNEG00000041638)	CCNDBP1 (ENSMNEG00000026131)	EPB42 (ENSMNEG00000034355)	TGM5 (ENSMNEG00000030600)	ENSMNEG00000031937	TGM7 (ENSMNEG00000019760)	ADAL (ENSMNEG00000023761)	ZSCAN29 (ENSMNEG00000021685)	TUBGCP4 (ENSMNEG00000031422)	TP53BP1 (ENSMNEG00000038881)	MAP1A (ENSMNEG00000011820)	ENSMNEG00000045511	ENSMNEG00000024607	ENSMNEG00000034687 ##22	STRC (ENSMNEG00000011427)	ENSMNEG00000037620	ENSMNEG00000034859	ENSMNEG00000041475 ##22	ENSMNEG00000041683	PDIA3 (ENSMNEG00000013207)	ELL3 (ENSMNEG00000035814)	ENSMNEG00000019223	SERINC4 (ENSMNEG00000041948) ##13	HYPK (ENSMNEG00000018318)	MFAP1 (ENSMNEG00000039309)	WDR76 (ENSMNEG00000032539)	FRMD5 (ENSMNEG00000029137)	GOLM2 (ENSMNEG00000020100)	ENSMNEG00000008668
Pig-tailed macaque	MODERN SPECIES	77	EPB42 (ENSMNEG00000034355)	TGM5 (ENSMNEG00000030600)	ENSMNEG00000031937	TGM7 (ENSMNEG00000019760)	ADAL (ENSMNEG00000023761)	ZSCAN29 (ENSMNEG00000021685)	TUBGCP4 (ENSMNEG00000031422)	TP53BP1 (ENSMNEG00000038881)	MAP1A (ENSMNEG00000011820)	ENSMNEG00000045511	ENSMNEG00000024607	ENSMNEG00000034687 ##22	STRC (ENSMNEG00000011427)	ENSMNEG00000037620	ENSMNEG00000034859	ENSMNEG00000041475 ##22	ENSMNEG00000041683	PDIA3 (ENSMNEG00000013207)	ELL3 (ENSMNEG00000035814)	ENSMNEG00000019223	SERINC4 (ENSMNEG00000041948) ##13	HYPK (ENSMNEG00000018318)	MFAP1 (ENSMNEG00000039309)	WDR76 (ENSMNEG00000032539)	FRMD5 (ENSMNEG00000029137)	GOLM2 (ENSMNEG00000020100)	ENSMNEG00000008668	CTDSPL2 (ENSMNEG00000021961)	EIF3J (ENSMNEG00000022347)	SPG11 (ENSMNEG00000037610)	PATL2 (ENSMNEG00000034510)
Rhinopithecus	ANCESTRAL SPECIES	301															ENSGT00390000009048.a.a.c	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.x	ENSGT01030000234623.a.b.b.a ##13	ENSGT00390000008502.g	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a.c	ENSGT01040000240503.A.a.a	ENSGT00390000018400.cb	ENSGT00390000016791	ENSGT00520000055649.b
Black snub-nosed monkey	MODERN SPECIES	2388															ENSRBIG00000020270	ENSRBIG00000028440 ##22
Golden snub-nosed monkey	MODERN SPECIES	206																ENSRROG00000039117 ##22	STRC (ENSRROG00000028780)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00390000008502	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00940000172438	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400
Eulipotyphla	ANCESTRAL SPECIES	7								ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000168408	ENSGT00940000155425	ENSGT00940000161615
Hedgehog	MODERN SPECIES	6384															ENSEEUG00000001585	ENSEEUG00000001653 ##22	STRC (ENSEEUG00000001664)
Common shrew	MODERN SPECIES	9776																ENSSARG00000009182 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Carnivora	ANCESTRAL SPECIES		ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00940000164980
Felidae	ANCESTRAL SPECIES	1	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT01100000264832	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00940000164980	ENSGT00390000016791
Panthera	ANCESTRAL SPECIES	3	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT01100000264832	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00940000164980	ENSGT00390000016791
Tiger	MODERN SPECIES	162	UBR1 (ENSPTIG00000019910)	TMEM62 (ENSPTIG00000021422)	CCNDBP1 (ENSPTIG00000001712)	EPB42 (ENSPTIG00000005846)	TGM5 (ENSPTIG00000008794)	TGM7 (ENSPTIG00000013835)	ENSPTIG00000015723	ADAL (ENSPTIG00000017071)	ZSCAN29 (ENSPTIG00000019845)	ENSPTIG00000020884	TUBGCP4 (ENSPTIG00000021008)	TP53BP1 (ENSPTIG00000021710)	MAP1A (ENSPTIG00000006818)	PPIP5K1 (ENSPTIG00000008294)	ENSPTIG00000020343	ENSPTIG00000020418 ##22	STRC (ENSPTIG00000021044)	CATSPER2 (ENSPTIG00000021679)	PDIA3 (ENSPTIG00000005303)	ELL3 (ENSPTIG00000006307)	ENSPTIG00000006529	ENSPTIG00000007204	SERINC4 (ENSPTIG00000007906) ##13	HYPK (ENSPTIG00000009290)	MFAP1 (ENSPTIG00000009513)	WDR76 (ENSPTIG00000009655)	FRMD5 (ENSPTIG00000011007)	GOLM2 (ENSPTIG00000013118)	CTDSPL2 (ENSPTIG00000014014)	ENSPTIG00000014467	SPG11 (ENSPTIG00000014679)
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT01100000264832	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00940000164980	ENSGT00390000016791
lion	MODERN SPECIES	6	TMEM62 (ENSPLOG00000016964)	CCNDBP1 (ENSPLOG00000016857)	EPB42 (ENSPLOG00000016641)	TGM5 (ENSPLOG00000016411)	TGM7 (ENSPLOG00000016273)	ENSPLOG00000016229	ENSPLOG00000016189	ADAL (ENSPLOG00000016122)	ENSPLOG00000016085	ZSCAN29 (ENSPLOG00000016020)	TUBGCP4 (ENSPLOG00000015836)	TP53BP1 (ENSPLOG00000015710)	MAP1A (ENSPLOG00000015628)	ENSPLOG00000015599	PPIP5K1 (ENSPLOG00000015450)	ENSPLOG00000015224 ##22	STRC (ENSPLOG00000014921)	CATSPER2 (ENSPLOG00000014732)	PDIA3 (ENSPLOG00000014671)	ELL3 (ENSPLOG00000014552)	ENSPLOG00000014444	SERINC4 (ENSPLOG00000014140) ##13	HYPK (ENSPLOG00000014071)	MFAP1 (ENSPLOG00000014030)	WDR76 (ENSPLOG00000013872)	FRMD5 (ENSPLOG00000013511)	GOLM2 (ENSPLOG00000013245)	CTDSPL2 (ENSPLOG00000013170)	EIF3J (ENSPLOG00000012912)	ENSPLOG00000012840	SPG11 (ENSPLOG00000012786)
leopard	MODERN SPECIES	7	TMEM62 (ENSPPRG00000025058)	CCNDBP1 (ENSPPRG00000025046)	ENSPPRG00000025044	EPB42 (ENSPPRG00000025029)	TGM5 (ENSPPRG00000025001)	TGM7 (ENSPPRG00000024988)	ENSPPRG00000024971	ADAL (ENSPPRG00000024955)	ENSPPRG00000024939	ZSCAN29 (ENSPPRG00000024898)	TUBGCP4 (ENSPPRG00000024876)	TP53BP1 (ENSPPRG00000024800)	MAP1A (ENSPPRG00000024781)	ENSPPRG00000024750	PPIP5K1 (ENSPPRG00000024488)	ENSPPRG00000024237 ##22	STRC (ENSPPRG00000024041)	CATSPER2 (ENSPPRG00000023581)	PDIA3 (ENSPPRG00000023424)	ELL3 (ENSPPRG00000023368)	ENSPPRG00000023227	SERINC4 (ENSPPRG00000023091) ##13	HYPK (ENSPPRG00000023061)	MFAP1 (ENSPPRG00000023055)	WDR76 (ENSPPRG00000022965)	FRMD5 (ENSPPRG00000000133)	GOLM2 (ENSPPRG00000000787)	CTDSPL2 (ENSPPRG00000001320)	EIF3J (ENSPPRG00000001550)	ENSPPRG00000001708	SPG11 (ENSPPRG00000004121)
Cat	MODERN SPECIES	237	TTBK2 (ENSFCAG00000003551)	UBR1 (ENSFCAG00000002426)	TMEM62 (ENSFCAG00000030437)	CCNDBP1 (ENSFCAG00000013215)	EPB42 (ENSFCAG00000013219)	TGM5 (ENSFCAG00000007264)	TGM7 (ENSFCAG00000013223)	ENSFCAG00000043646	ADAL (ENSFCAG00000013329)	ENSFCAG00000049240	ZSCAN29 (ENSFCAG00000002712)	TUBGCP4 (ENSFCAG00000024778)	TP53BP1 (ENSFCAG00000022265)	MAP1A (ENSFCAG00000033534)	PPIP5K1 (ENSFCAG00000004223)	ENSFCAG00000018994 ##22	STRC (ENSFCAG00000006605)	CATSPER2 (ENSFCAG00000025930)	PDIA3 (ENSFCAG00000006608)	ELL3 (ENSFCAG00000006609)	SERF2 (ENSFCAG00000031217)	SERINC4 (ENSFCAG00000006611) ##13	HYPK (ENSFCAG00000006610)	MFAP1 (ENSFCAG00000006612)	WDR76 (ENSFCAG00000006613)	FRMD5 (ENSFCAG00000006614)	GOLM2 (ENSFCAG00000015616)	CTDSPL2 (ENSFCAG00000036750)	EIF3J (ENSFCAG00000034878)	ENSFCAG00000037985	SPG11 (ENSFCAG00000012217)
Caniformia	ANCESTRAL SPECIES	12	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00940000164980
Canidae	ANCESTRAL SPECIES	15	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.v	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01090000260593	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.v	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01090000260593	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Dingo	MODERN SPECIES	205	ENSCAFG00020003773	ENSCAFG00020003740	TMEM62 (ENSCAFG00020003727)	CCNDBP1 (ENSCAFG00020003722)	EPB42 (ENSCAFG00020003624)	TGM5 (ENSCAFG00020003408)	TGM7 (ENSCAFG00020003382)	LCMT2 (ENSCAFG00020003380)	ADAL (ENSCAFG00020003373)	ENSCAFG00020003367	ZSCAN29 (ENSCAFG00020003347)	TUBGCP4 (ENSCAFG00020003339)	TP53BP1 (ENSCAFG00020002260)	MAP1A (ENSCAFG00020002132)	PPIP5K1 (ENSCAFG00020000688)	ENSCAFG00020000512 ##22	ENSCAFG00020000283	CATSPER2 (ENSCAFG00020000273)	PDIA3 (ENSCAFG00020000265)	ELL3 (ENSCAFG00020000254)	ENSCAFG00020000098	SERINC4 (ENSCAFG00020022318) ##13	HYPK (ENSCAFG00020022315)	MFAP1 (ENSCAFG00020022307)	WDR76 (ENSCAFG00020022296)	ENSCAFG00020022294	ENSCAFG00020022290	ENSCAFG00020022284	GOLM2 (ENSCAFG00020022279)	ENSCAFG00020022273	CTDSPL2 (ENSCAFG00020022210)
Dog	MODERN SPECIES	23	TTBK2 (ENSCAFG00845021447)	UBR1 (ENSCAFG00845021765)	TMEM62 (ENSCAFG00845022078)	CCNDBP1 (ENSCAFG00845022205)	EPB42 (ENSCAFG00845022323)	TGM5 (ENSCAFG00845022500)	TGM7 (ENSCAFG00845022748)	ENSCAFG00845022880	ADAL (ENSCAFG00845022940)	ZSCAN29 (ENSCAFG00845023067)	ENSCAFG00845023144	TUBGCP4 (ENSCAFG00845023187)	TP53BP1 (ENSCAFG00845023383)	MAP1A (ENSCAFG00845024039)	PPIP5K1 (ENSCAFG00845024234)	CKMT1A (ENSCAFG00845025142) ##22	STRC (ENSCAFG00845025325)	CATSPER2 (ENSCAFG00845025764)	PDIA3 (ENSCAFG00845025959)	ELL3 (ENSCAFG00845026055)	SERF2 (ENSCAFG00845026282)	SERINC4 (ENSCAFG00845026382) ##13	HYPK (ENSCAFG00845026509)	MFAP1 (ENSCAFG00845026583)	WDR76 (ENSCAFG00845026697)	FRMD5 (ENSCAFG00845027034)	CASC4 (ENSCAFG00845027538)	CTDSPL2 (ENSCAFG00845027701)	ENSCAFG00845027793	EIF3J (ENSCAFG00845027834)	SPG11 (ENSCAFG00845028015)
Red fox	MODERN SPECIES	28	UBR1 (ENSVVUG00000009103)	TMEM62 (ENSVVUG00000009625)	CCNDBP1 (ENSVVUG00000009638)	EPB42 (ENSVVUG00000009646)	TGM5 (ENSVVUG00000009665)	TGM7 (ENSVVUG00000009709)	LCMT2 (ENSVVUG00000009725)	ADAL (ENSVVUG00000009727)	ZSCAN29 (ENSVVUG00000009743)	ENSVVUG00000009747	TUBGCP4 (ENSVVUG00000009758)	TP53BP1 (ENSVVUG00000009785)	MAP1A (ENSVVUG00000009860)	PPIP5K1 (ENSVVUG00000009875)	ENSVVUG00000009944	ENSVVUG00000009966 ##22	STRC (ENSVVUG00000010410)	CATSPER2 (ENSVVUG00000010512)	PDIA3 (ENSVVUG00000010527)	ELL3 (ENSVVUG00000010538)	SERINC4 (ENSVVUG00000010565) ##13	SERF2 (ENSVVUG00000010617)	ENSVVUG00000010633	MFAP1 (ENSVVUG00000010651)	WDR76 (ENSVVUG00000010752)	ENSVVUG00000010768	FRMD5 (ENSVVUG00000010774)	ENSVVUG00000010802	ENSVVUG00000010815	ENSVVUG00000010823	CASC4 (ENSVVUG00000010830)
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00940000164980
Mustelinae	ANCESTRAL SPECIES	28	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00940000164980
American mink	MODERN SPECIES	33	CDAN1 (ENSNVIG00000019447)	TTBK2 (ENSNVIG00000019486)	UBR1 (ENSNVIG00000019572)	TMEM62 (ENSNVIG00000019778)	CCNDBP1 (ENSNVIG00000019814)	EPB42 (ENSNVIG00000019847)	TGM5 (ENSNVIG00000019927)	TGM7 (ENSNVIG00000019982)	ENSNVIG00000020024	ADAL (ENSNVIG00000020035)	ZSCAN29 (ENSNVIG00000020101)	TUBGCP4 (ENSNVIG00000020153)	TP53BP1 (ENSNVIG00000020207)	MAP1A (ENSNVIG00000020330)	PPIP5K1 (ENSNVIG00000020362)	ENSNVIG00000020740 ##22	STRC (ENSNVIG00000020760)	ENSNVIG00000020798	PDIA3 (ENSNVIG00000020817)	ELL3 (ENSNVIG00000020826)	ENSNVIG00000020849	SERINC4 (ENSNVIG00000020880) ##13	HYPK (ENSNVIG00000020919)	MFAP1 (ENSNVIG00000020925)	WDR76 (ENSNVIG00000020937)	FRMD5 (ENSNVIG00000020972)	ENSNVIG00000021035	GOLM2 (ENSNVIG00000021044)	CTSL2 (ENSNVIG00000021084)	EIF3J (ENSNVIG00000021150)	SPG11 (ENSNVIG00000021173)
Ferret	MODERN SPECIES	190	CDAN1 (ENSMPUG00000009921)	TTBK2 (ENSMPUG00000009987)	UBR1 (ENSMPUG00000009999)	TMEM62 (ENSMPUG00000010022)	CCNDBP1 (ENSMPUG00000010063)	EPB42 (ENSMPUG00000010075)	TGM5 (ENSMPUG00000010085)	TGM7 (ENSMPUG00000010094)	LCMT2 (ENSMPUG00000019844)	ADAL (ENSMPUG00000010186)	ZSCAN29 (ENSMPUG00000010249)	TUBGCP4 (ENSMPUG00000010254)	TP53BP1 (ENSMPUG00000010262)	MAP1A (ENSMPUG00000010274)	PPIP5K1 (ENSMPUG00000010280)	ENSMPUG00000010301 ##22	STRC (ENSMPUG00000010354)	CATSPER2 (ENSMPUG00000010412)	PDIA3 (ENSMPUG00000010417)	ELL3 (ENSMPUG00000010513)	SERINC4 (ENSMPUG00000010569) ##13	HYPK (ENSMPUG00000010636)	MFAP1 (ENSMPUG00000010639)	WDR76 (ENSMPUG00000010642)	FRMD5 (ENSMPUG00000010650)	ENSMPUG00000010686	GOLM2 (ENSMPUG00000010688)	CTDSPL2 (ENSMPUG00000010708)	EIF3J (ENSMPUG00000010765)	SPG11 (ENSMPUG00000010811)	ENSMPUG00000010828
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182772.B.a.b.db ##22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	953																ENSAMEG00000029595 ##22
Giant Panda	MODERN SPECIES	899																ENSAMEG00000024615 ##22
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000016216	ENSGT00940000171719	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b.eb ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425.d	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Ursus	ANCESTRAL SPECIES	40	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b.k	ENSGT00940000171719	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b.eb ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425.d	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
American black bear	MODERN SPECIES	6615															PPIP5K1 (ENSUAMG00000015040)	ENSUAMG00000014991 ##22	STRC (ENSUAMG00000014982)	CATSPER2 (ENSUAMG00000014977)	PDIA3 (ENSUAMG00000014971)
Polar bear	MODERN SPECIES	244	TTBK2 (ENSUMAG00000010746)	UBR1 (ENSUMAG00000009976)	ENSUMAG00000009700	ENSUMAG00000009660	ENSUMAG00000009657	TGM5 (ENSUMAG00000009574)	TGM7 (ENSUMAG00000009569)	CCNDBP1 (ENSUMAG00000009558)	ADAL (ENSUMAG00000009542)	ENSUMAG00000009541	ZSCAN29 (ENSUMAG00000009540)	TUBGCP4 (ENSUMAG00000009539)	TP53BP1 (ENSUMAG00000009069)	MAP1A (ENSUMAG00000008987)	PPIP5K1 (ENSUMAG00000008525)	ENSUMAG00000008455 ##22	STRC (ENSUMAG00000008390)	ENSUMAG00000008375	PDIA3 (ENSUMAG00000008371)	ELL3 (ENSUMAG00000008365)	ENSUMAG00000008346	SERINC4 (ENSUMAG00000008342) ##13	HYPK (ENSUMAG00000008339)	MFAP1 (ENSUMAG00000008336)	WDR76 (ENSUMAG00000008334)	FRMD5 (ENSUMAG00000008295)	ENSUMAG00000008281	GOLM2 (ENSUMAG00000008271)	CTDSPL2 (ENSUMAG00000008260)	ENSUMAG00000008255	SPG11 (ENSUMAG00000007807)
Giant Panda	MODERN SPECIES	15	UBR1 (ENSAMEG00000015654)	TMEM62 (ENSAMEG00000015653)	ENSAMEG00000027291	EPB42 (ENSAMEG00000015596)	TGM5 (ENSAMEG00000015482)	ENSAMEG00000015637	TGM7 (ENSAMEG00000015471)	LCMT2 (ENSAMEG00000019132)	ADAL (ENSAMEG00000015442)	ZSCAN29 (ENSAMEG00000015432)	TUBGCP4 (ENSAMEG00000015400)	TP53BP1 (ENSAMEG00000015350)	MAP1A (ENSAMEG00000015336)	ENSAMEG00000026242	PPIP5K1 (ENSAMEG00000015308)	ENSAMEG00000015305 ##22	STRC (ENSAMEG00000015280)	CATSPER2 (ENSAMEG00000015273)	PDIA3 (ENSAMEG00000015247)	ELL3 (ENSAMEG00000015225)	ENSAMEG00000030617	SERINC4 (ENSAMEG00000015189) ##13	HYPK (ENSAMEG00000027266)	MFAP1 (ENSAMEG00000015181)	WDR76 (ENSAMEG00000028955)	FRMD5 (ENSAMEG00000015158)	GOLM2 (ENSAMEG00000015143)	CTDSPL2 (ENSAMEG00000015120)	EIF3J (ENSAMEG00000015104)	SPG11 (ENSAMEG00000015003)	B2M (ENSAMEG00000023631)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Equus	ANCESTRAL SPECIES	4	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Horse	MODERN SPECIES		UBR1 (ENSECAG00000011972)	ENSECAG00000055368	TMEM62 (ENSECAG00000024443)	CCNDBP1 (ENSECAG00000011382)	EPB42 (ENSECAG00000022419)	TGM5 (ENSECAG00000009004)	TGM7 (ENSECAG00000000416)	LCMT2 (ENSECAG00000056992)	ENSECAG00000054709	ADAL (ENSECAG00000014340)	ZSCAN29 (ENSECAG00000012289)	TUBGCP4 (ENSECAG00000007069)	TP53BP1 (ENSECAG00000008093)	MAP1A (ENSECAG00000022695)	PPIP5K1 (ENSECAG00000015951)	ENSECAG00000022912 ##22	STRC (ENSECAG00000009715)	CATSPER2 (ENSECAG00000020759)	PDIA3 (ENSECAG00000020252)	ELL3 (ENSECAG00000015723)	SERINC4 (ENSECAG00000009834) ##13	ENSECAG00000039232	ENSECAG00000048173	ENSECAG00000055500	WDR76 (ENSECAG00000012903)	ENSECAG00000048714	ENSECAG00000043984	FRMD5 (ENSECAG00000019696)	ENSECAG00000054750	ENSECAG00000053853	ENSECAG00000045361
Donkey	MODERN SPECIES	11	ENSEASG00005024645	UBR1 (ENSEASG00005011517)	TMEM62 (ENSEASG00005011316)	CCNDBP1 (ENSEASG00005011298)	EPB42 (ENSEASG00005011285)	TGM5 (ENSEASG00005011164)	TGM7 (ENSEASG00005011143)	ENSEASG00005027813	ADAL (ENSEASG00005011127)	ENSEASG00005025343	ZSCAN29 (ENSEASG00005011109)	TUBGCP4 (ENSEASG00005010765)	TP53BP1 (ENSEASG00005009977)	MAP1A (ENSEASG00005009954)	PPIP5K1 (ENSEASG00005006216)	ENSEASG00005005900 ##22	STRC (ENSEASG00005005882)	CATSPER2 (ENSEASG00005005873)	PDIA3 (ENSEASG00005004953)	ELL3 (ENSEASG00005004866)	ENSEASG00005024619	SERINC4 (ENSEASG00005004840) ##13	HYPK (ENSEASG00005034074)	MFAP1 (ENSEASG00005004835)	WDR76 (ENSEASG00005018045)	FRMD5 (ENSEASG00005027709)	GOLM2 (ENSEASG00005018025)	CTDSPL2 (ENSEASG00005018020)	EIF3J (ENSEASG00005018015)	SPG11 (ENSEASG00005017999)	PATL2 (ENSEASG00005017984)
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Greater horseshoe bat	MODERN SPECIES	24	UBR1 (ENSRFEG00010005062)	TMEM62 (ENSRFEG00010005030)	CCNDBP1 (ENSRFEG00010005011)	EPB42 (ENSRFEG00010004993)	TGM5 (ENSRFEG00010004970)	TGM7 (ENSRFEG00010004947)	ENSRFEG00010004942	ENSRFEG00010004936	ADAL (ENSRFEG00010004922)	ENSRFEG00010004906	ZSCAN29 (ENSRFEG00010004895)	TUBGCP4 (ENSRFEG00010004872)	TP53BP1 (ENSRFEG00010004784)	MAP1A (ENSRFEG00010004749)	PPIP5K1 (ENSRFEG00010004652)	CKMT1A (ENSRFEG00010004519) ##22	STRC (ENSRFEG00010004480)	CATSPER2 (ENSRFEG00010004428)	GRP58 (ENSRFEG00010004402)	ELL3 (ENSRFEG00010004379)	ENSRFEG00010004343	SERINC4 (ENSRFEG00010004311) ##13	HYPK (ENSRFEG00010004290)	MFAP1 (ENSRFEG00010004280)	WDR76 (ENSRFEG00010004236)	ENSRFEG00010004220	ENSRFEG00010004210	FRMD5 (ENSRFEG00010004118)	GOLM2 (ENSRFEG00010004023)	CTDSPL2 (ENSRFEG00010003997)	EIF3J (ENSRFEG00010003971)
Microbat	MODERN SPECIES	1046	CDAN1 (ENSMLUG00000017444)	TTBK2 (ENSMLUG00000017446)	UBR1 (ENSMLUG00000010484)	ENSMLUG00000008725	CCNDBP1 (ENSMLUG00000008756)	EPB42 (ENSMLUG00000005576)	TGM5 (ENSMLUG00000008779)	TGM7 (ENSMLUG00000008802)	LCMT2 (ENSMLUG00000008840)	ENSMLUG00000008884	ZSCAN29 (ENSMLUG00000008922)	TUBGCP4 (ENSMLUG00000008933)	ENSMLUG00000008972	MAP1A (ENSMLUG00000014007)	PPIP5K1 (ENSMLUG00000014016)	ENSMLUG00000014035 ##22	STRC (ENSMLUG00000014042)	CATSPER2 (ENSMLUG00000009375)	PDIA3 (ENSMLUG00000009380)	ELL3 (ENSMLUG00000009401)	ENSMLUG00000025872	SERF2 (ENSMLUG00000024894)	SERINC4 (ENSMLUG00000009433) ##13	HYPK (ENSMLUG00000009424)	MFAP1 (ENSMLUG00000013000)	WDR76 (ENSMLUG00000004781)	ENSMLUG00000002196	FRMD5 (ENSMLUG00000004791)	ENSMLUG00000026881	GOLM2 (ENSMLUG00000009503)	CTDSPL2 (ENSMLUG00000011720)
Megabat	MODERN SPECIES	2122										ADAL (ENSPVAG00000008845)	ZSCAN29 (ENSPVAG00000008846)	TUBGCP4 (ENSPVAG00000008847)	TP53BP1 (ENSPVAG00000008848)	MAP1A (ENSPVAG00000008851)	PPIP5K1 (ENSPVAG00000008853)	ENSPVAG00000008854 ##22	STRC (ENSPVAG00000008857)
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Suina	ANCESTRAL SPECIES	12	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00910000148786	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Chacoan peccary	MODERN SPECIES	162	ENSCWAG00000002875	EPB42 (ENSCWAG00000002897)	TGM5 (ENSCWAG00000003014)	TGM7 (ENSCWAG00000003077)	LCMT2 (ENSCWAG00000003098)	ADAL (ENSCWAG00000003119)	ZSCAN29 (ENSCWAG00000003147)	ENSCWAG00000003158	TUBGCP4 (ENSCWAG00000003175)	ENSCWAG00000003191	TP53BP1 (ENSCWAG00000003204)	MAP1A (ENSCWAG00000003251)	ENSCWAG00000003258	PPIP5K1 (ENSCWAG00000003290)	ENSCWAG00000003328	ENSCWAG00000003344 ##22	STRC (ENSCWAG00000003386)	CATSPER2 (ENSCWAG00000003447)	PDIA3 (ENSCWAG00000003460)	ELL3 (ENSCWAG00000003479)	ENSCWAG00000003495	SERINC4 (ENSCWAG00000003531) ##13	HYPK (ENSCWAG00000003582)	MFAP1 (ENSCWAG00000003592)	WDR76 (ENSCWAG00000003608)	FRMD5 (ENSCWAG00000003648)	GOLM2 (ENSCWAG00000003803)	CTDSPL2 (ENSCWAG00000003850)	EIF3J (ENSCWAG00000003919)	SPG11 (ENSCWAG00000004037)	PATL2 (ENSCWAG00000004115)
Pig	MODERN SPECIES		TTBK2 (ENSSSCG00000004718)	UBR1 (ENSSSCG00000004717)	TMEM62 (ENSSSCG00000004716)	CCNDBP1 (ENSSSCG00000034771)	EPB42 (ENSSSCG00000004714)	TGM5 (ENSSSCG00000004713)	TGM7 (ENSSSCG00000004712)	ENSSSCG00000048742	ADAL (ENSSSCG00000004710)	ENSSSCG00000040362	ZSCAN29 (ENSSSCG00000004709)	TUBGCP4 (ENSSSCG00000004708)	TP53BP1 (ENSSSCG00000031949)	MAP1A (ENSSSCG00000004705)	PPIP5K1 (ENSSSCG00000004704)	ENSSSCG00000004703 ##22	STRC (ENSSSCG00000004702)	CATSPER2 (ENSSSCG00000004701)	PDIA3 (ENSSSCG00000004700)	ELL3 (ENSSSCG00000004699)	SERF2 (ENSSSCG00000024263)	SERINC4 (ENSSSCG00000004698) ##13	HYPK (ENSSSCG00000054394)	MFAP1 (ENSSSCG00000040383)	WDR76 (ENSSSCG00000004695)	FRMD5 (ENSSSCG00000004694)	GOLM2 (ENSSSCG00000023996)	CTDSPL2 (ENSSSCG00000035827)	EIF3J (ENSSSCG00000004691)	SPG11 (ENSSSCG00000004684)	PATL2 (ENSSSCG00000061749)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Cetacea	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000155541.C.db.b.b	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000155541.C.db.b.b	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000155541.C.db.b.b	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000155541.C.db.b.b	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000155541.C.db.b.b	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791
Beluga whale	MODERN SPECIES	6	TTBK2 (ENSDLEG00000018771)	UBR1 (ENSDLEG00000017743)	TMEM62 (ENSDLEG00000017613)	CCNDBP1 (ENSDLEG00000017582)	EPB42 (ENSDLEG00000017534)	TGM7 (ENSDLEG00000017499)	LCMT2 (ENSDLEG00000017490)	ADAL (ENSDLEG00000017472)	ENSDLEG00000017455	ZSCAN29 (ENSDLEG00000017297)	ENSDLEG00000017280	TUBGCP4 (ENSDLEG00000017129)	TP53BP1 (ENSDLEG00000014379)	MAP1A (ENSDLEG00000014177)	PPIP5K1 (ENSDLEG00000007803)	ENSDLEG00000007579 ##22	ENSDLEG00000007509	ENSDLEG00000007503	ENSDLEG00000007495	PDIA3 (ENSDLEG00000007488)	ELL3 (ENSDLEG00000007484)	ENSDLEG00000007480	SERINC4 (ENSDLEG00000007471) ##13	HYPK (ENSDLEG00000007461)	MFAP1 (ENSDLEG00000007447)	WDR76 (ENSDLEG00000007295)	FRMD5 (ENSDLEG00000007181)	ENSDLEG00000007147	CTDSPL2 (ENSDLEG00000007127)	EIF3J (ENSDLEG00000007104)	SPG11 (ENSDLEG00000007005)
Narwhal	MODERN SPECIES	308	UBR1 (ENSMMNG00015012020)	ENSMMNG00015011981	TMEM62 (ENSMMNG00015011956)	CCNDBP1 (ENSMMNG00015011922)	EPB42 (ENSMMNG00015011837)	TGM7 (ENSMMNG00015011801)	ENSMMNG00015011791	ADAL (ENSMMNG00015011768)	ENSMMNG00015011748	ZSCAN29 (ENSMMNG00015011736)	TUBGCP4 (ENSMMNG00015011696)	TP53BP1 (ENSMMNG00015011620)	MAP1A (ENSMMNG00015011548)	ENSMMNG00015011526	PPIP5K1 (ENSMMNG00015011344)	ENSMMNG00015011263 ##22	STRC (ENSMMNG00015011220)	CATSPER2 (ENSMMNG00015011174)	PDIA3 (ENSMMNG00015011142)	ELL3 (ENSMMNG00015011114)	ENSMMNG00015011084	SERINC4 (ENSMMNG00015011055) ##13	HYPK (ENSMMNG00015011035)	MFAP1 (ENSMMNG00015011013)	WDR76 (ENSMMNG00015010989)	ENSMMNG00015010975	FRMD5 (ENSMMNG00015010889)	ENSMMNG00015010831	GOLM2 (ENSMMNG00015010809)	CTDSPL2 (ENSMMNG00015010751)	EIF3J (ENSMMNG00015010692)
Vaquita	MODERN SPECIES	11	TTBK2 (ENSPSNG00000004523)	UBR1 (ENSPSNG00000004451)	TMEM62 (ENSPSNG00000004351)	CCNDBP1 (ENSPSNG00000004307)	EPB42 (ENSPSNG00000004215)	TGM7 (ENSPSNG00000004135)	ENSPSNG00000004117	ADAL (ENSPSNG00000004099)	ENSPSNG00000004083	ZSCAN29 (ENSPSNG00000004061)	TUBGCP4 (ENSPSNG00000004029)	TP53BP1 (ENSPSNG00000003964)	MAP1A (ENSPSNG00000003915)	ENSPSNG00000003903	PPIP5K1 (ENSPSNG00000003797)	ENSPSNG00000003710 ##22	STRC (ENSPSNG00000003653)	CATSPER2 (ENSPSNG00000003571)	PDIA3 (ENSPSNG00000003532)	ELL3 (ENSPSNG00000003467)	SERINC4 (ENSPSNG00000003440) ##13	ENSPSNG00000003408	HYPK (ENSPSNG00000003373)	MFAP1 (ENSPSNG00000003350)	WDR76 (ENSPSNG00000003281)	FRMD5 (ENSPSNG00000003161)	ENSPSNG00000003107	GOLM2 (ENSPSNG00000003082)	CTDSPL2 (ENSPSNG00000003048)	EIF3J (ENSPSNG00000002999)	SPG11 (ENSPSNG00000002856)
Dolphin	MODERN SPECIES	1672														MAP1A (ENSTTRG00000005790)	PPIP5K1 (ENSTTRG00000005820)	ENSTTRG00000005837 ##22	STRC (ENSTTRG00000005846)
Sperm whale	MODERN SPECIES	2	TTBK2 (ENSPCTG00005010062)	UBR1 (ENSPCTG00005009042)	TMEM62 (ENSPCTG00005008842)	CCNDBP1 (ENSPCTG00005008747)	EPB42 (ENSPCTG00005021779)	TGM5 (ENSPCTG00005021718)	TGM7 (ENSPCTG00005021666)	ENSPCTG00005021649	ADAL (ENSPCTG00005021634)	ENSPCTG00005021618	ZSCAN29 (ENSPCTG00005021596)	TUBGCP4 (ENSPCTG00005021549)	TP53BP1 (ENSPCTG00005021432)	MAP1A (ENSPCTG00005021376)	PPIP5K1 (ENSPCTG00005021176)	ENSPCTG00005021125 ##22	STRC (ENSPCTG00005020984)	CATSPER2 (ENSPCTG00005020966)	PDIA3 (ENSPCTG00005020814)	ELL3 (ENSPCTG00005020748)	ENSPCTG00005020713	ENSPCTG00005020642 ##13	HYPK (ENSPCTG00005020606)	MFAP1 (ENSPCTG00005020553)	WDR76 (ENSPCTG00005020469)	FRMD5 (ENSPCTG00005020197)	ENSPCTG00005020152	CASC4 (ENSPCTG00005020080)	CTDSPL2 (ENSPCTG00005019994)	EIF3J (ENSPCTG00005019919)	SPG11 (ENSPCTG00005019767)
Blue whale	MODERN SPECIES	11	TTBK2 (ENSBMSG00010003774)	UBR1 (ENSBMSG00010003745)	TMEM62 (ENSBMSG00010003716)	CCNDBP1 (ENSBMSG00010003695)	EPB42 (ENSBMSG00010003597)	TGM5 (ENSBMSG00010003578)	ENSBMSG00010003570	ADAL (ENSBMSG00010003560)	ENSBMSG00010003548	ZSCAN29 (ENSBMSG00010003539)	TUBGCP4 (ENSBMSG00010003528)	TP53BP1 (ENSBMSG00010003494)	MAP1A (ENSBMSG00010003465)	ENSBMSG00010003460	PPIP5K1 (ENSBMSG00010003425)	ENSBMSG00010003403 ##22	STRC (ENSBMSG00010003355)	ENSBMSG00010003319	PDIA3 (ENSBMSG00010003308)	ELL3 (ENSBMSG00010003292)	ENSBMSG00010003264	SERINC4 (ENSBMSG00010003218) ##13	HYPK (ENSBMSG00010003189)	MFAP1 (ENSBMSG00010003170)	WDR76 (ENSBMSG00010003140)	FRMD5 (ENSBMSG00010003066)	ENSBMSG00010003036	GOLM2 (ENSBMSG00010003023)	CTDSPL2 (ENSBMSG00010002980)	EIF3J (ENSBMSG00010002953)	SPG11 (ENSBMSG00010002909)
Pecora	ANCESTRAL SPECIES	18	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a
Yarkand deer	MODERN SPECIES	4	FKBP3 (ENSCHYG00000015195)	FANCM (ENSCHYG00000015339)	ENSCHYG00000016009	MIS18BP1 (ENSCHYG00000016109)	TGM5 (ENSCHYG00000016369)	TGM7 (ENSCHYG00000017347)	LCMT2 (ENSCHYG00000017603)	ADAL (ENSCHYG00000017637)	ZSCAN29 (ENSCHYG00000017824)	ENSCHYG00000009718	TUBGCP4 (ENSCHYG00000009762)	TP53BP1 (ENSCHYG00000010117)	MAP1A (ENSCHYG00000011244)	PPIP5K1 (ENSCHYG00000011394)	PDIA3 (ENSCHYG00000011974)	ENSCHYG00000012057 ##22	STRC (ENSCHYG00000012126)	CATSPER2 (ENSCHYG00000012331)	ELL3 (ENSCHYG00000012394)	ENSCHYG00000012511	ENSCHYG00000012607	SERINC4 (ENSCHYG00000012661) ##13	HYPK (ENSCHYG00000012914)	ENSCHYG00000012950	WDR76 (ENSCHYG00000012996)	ENSCHYG00000013083	FRMD5 (ENSCHYG00000013139)	ENSCHYG00000013835	ENSCHYG00000013980	GPR68 (ENSCHYG00000013997)	CCDC88C (ENSCHYG00000014063)
Percora_a	ANCESTRAL SPECIES	20	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a
Siberian musk deer	MODERN SPECIES	389				MIS18BP1 (ENSMMSG00000012941)	TGM5 (ENSMMSG00000012773)	TGM7 (ENSMMSG00000012686)	ENSMMSG00000012658	ADAL (ENSMMSG00000012602)	ENSMMSG00000012581	ZSCAN29 (ENSMMSG00000012560)	TUBGCP4 (ENSMMSG00000012482)	TP53BP1 (ENSMMSG00000012242)	MAP1A (ENSMMSG00000012201)	ENSMMSG00000012183	PPIP5K1 (ENSMMSG00000012001)	ENSMMSG00000011965 ##22	STRC (ENSMMSG00000011824)	CATSPER2 (ENSMMSG00000011736)	PDIA3 (ENSMMSG00000011697)	ELL3 (ENSMMSG00000011646)	ENSMMSG00000011561	SERINC4 (ENSMMSG00000011506) ##13	HYPK (ENSMMSG00000011465)	MFAP1 (ENSMMSG00000011433)	WDR76 (ENSMMSG00000011359)	FRMD5 (ENSMMSG00000011065)	ENSMMSG00000011012	ENSMMSG00000010998	GPR68 (ENSMMSG00000010984)	CCDC88C (ENSMMSG00000010829)	PPP4R3A (ENSMMSG00000010737)
Bovidae	ANCESTRAL SPECIES	20	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a
Caprinae	ANCESTRAL SPECIES	22	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a	ENSGT00390000008142.x
Goat	MODERN SPECIES	13	TOGARAM1 (ENSCHIG00000015767)	PRPF39 (ENSCHIG00000010118)	FKBP3 (ENSCHIG00000018893)	FANCM (ENSCHIG00000015176)	MIS18BP1 (ENSCHIG00000023697)	TGM5 (ENSCHIG00000015160)	TGM7 (ENSCHIG00000018370)	LCMT2 (ENSCHIG00000004003)	ADAL (ENSCHIG00000004934)	ZSCAN29 (ENSCHIG00000020973)	TUBGCP4 (ENSCHIG00000015668)	TP53BP1 (ENSCHIG00000010194)	MAP1A (ENSCHIG00000016473)	PPIP5K1 (ENSCHIG00000007418)	ENSCHIG00000014087	ENSCHIG00000018489 ##22	STRC (ENSCHIG00000022061)	CATSPER2 (ENSCHIG00000017322)	PDIA3 (ENSCHIG00000024672)	ELL3 (ENSCHIG00000015271)	SERF2 (ENSCHIG00000016434)	SERINC4 (ENSCHIG00000020878) ##13	HYPK (ENSCHIG00000007815)	MFAP1 (ENSCHIG00000013829)	WDR76 (ENSCHIG00000012212)	ENSCHIG00000017483	FRMD5 (ENSCHIG00000026506)	GPR68 (ENSCHIG00000009864)	CCDC88C (ENSCHIG00000016957)	PPP4R3A (ENSCHIG00000010244)	ENSCHIG00000005255
Rambouillet Sheep	MODERN SPECIES	9	TOGARAM1 (ENSOARG00020006719)	PRPF39 (ENSOARG00020006969)	ENSOARG00020007061	ENSOARG00020007130	ENSOARG00020007227	TGM5 (ENSOARG00020007474)	TGM7 (ENSOARG00020007680)	ENSOARG00020007742	ADAL (ENSOARG00020007792)	ZSCAN29 (ENSOARG00020008048)	ENSOARG00020008109	TUBGCP4 (ENSOARG00020008164)	TP53BP1 (ENSOARG00020008490)	MAP1A (ENSOARG00020008724)	PPIP5K1 (ENSOARG00020008782)	ENSOARG00020009302 ##22	STRC (ENSOARG00020009359)	CATSPER2 (ENSOARG00020009538)	PDIA3 (ENSOARG00020009659)	ELL3 (ENSOARG00020009785)	ENSOARG00020009854	SERINC4 (ENSOARG00020010035) ##13	HYPK (ENSOARG00020010442)	MFAP1 (ENSOARG00020010495)	WDR76 (ENSOARG00020010574)	FRMD5 (ENSOARG00020010914)	DGLUCY (ENSOARG00020011574)	GPR68 (ENSOARG00020011709)	CCDC88C (ENSOARG00020011759)	PPP4R3A (ENSOARG00020012217)	ENSOARG00020012834
Bovinae	ANCESTRAL SPECIES	19	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a
Bos	ANCESTRAL SPECIES	18	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a
Bos_a	ANCESTRAL SPECIES	10	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00970000197113	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00900000143426	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000183254	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00390000002237	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a
Wild yak	MODERN SPECIES	499	PRPF39 (ENSBMUG00000019878)	FKBP3 (ENSBMUG00000019888)	FANCM (ENSBMUG00000019916)	MIS18BP1 (ENSBMUG00000019945)	TGM5 (ENSBMUG00000020000)	TGM7 (ENSBMUG00000020022)	ENSBMUG00000020037	ADAL (ENSBMUG00000020057)	ZSCAN29 (ENSBMUG00000020104)	ENSBMUG00000020113	TUBGCP4 (ENSBMUG00000020133)	TP53BP1 (ENSBMUG00000020213)	MAP1A (ENSBMUG00000020290)	PPIP5K1 (ENSBMUG00000020411)	ENSBMUG00000020451	ENSBMUG00000020471 ##22	STRC (ENSBMUG00000020489)	ENSBMUG00000020503	ENSBMUG00000020513	PDIA3 (ENSBMUG00000020521)	ELL3 (ENSBMUG00000020545)	ENSBMUG00000020556	SERINC4 (ENSBMUG00000020582) ##13	HYPK (ENSBMUG00000020591)	MFAP1 (ENSBMUG00000020605)	WDR76 (ENSBMUG00000020622)	FRMD5 (ENSBMUG00000020708)	ENSBMUG00000020759	GPR68 (ENSBMUG00000020773)	CCDC88C (ENSBMUG00000020840)	PPP4R3A (ENSBMUG00000020928)
Domestic yak	MODERN SPECIES	8	PRPF39 (ENSBGRG00000007961)	FKBP3 (ENSBGRG00000008123)	FANCM (ENSBGRG00000008250)	MIS18BP1 (ENSBGRG00000008879)	TGM5 (ENSBGRG00000009069)	TGM7 (ENSBGRG00000009342)	ENSBGRG00000009447	ADAL (ENSBGRG00000009499)	ZSCAN29 (ENSBGRG00000009662)	ENSBGRG00000009739	TUBGCP4 (ENSBGRG00000009788)	TP53BP1 (ENSBGRG00000010090)	ENSBGRG00000010389	MAP1A (ENSBGRG00000010433)	PPIP5K1 (ENSBGRG00000010551)	ENSBGRG00000011804 ##22	STRC (ENSBGRG00000011966)	CATSPER2 (ENSBGRG00000012305)	PDIA3 (ENSBGRG00000012583)	ELL3 (ENSBGRG00000012975)	ENSBGRG00000013122	SERINC4 (ENSBGRG00000013278) ##13	HYPK (ENSBGRG00000013604)	MFAP1 (ENSBGRG00000013656)	WDR76 (ENSBGRG00000013717)	FRMD5 (ENSBGRG00000014015)	DGLUCY (ENSBGRG00000014639)	GPR68 (ENSBGRG00000015063)	ENSBGRG00000015120	ENSBGRG00000015449	ENSBGRG00000015549
Bos_b	ANCESTRAL SPECIES	18	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480	ENSGT00390000007395	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347.b	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00940000169193	ENSGT00950000183136.a.a	ENSGT00940000154785.A	ENSGT00390000018199.a	ENSGT00390000008142.x.a
Cow	MODERN SPECIES	13	KLHL28 (ENSBTAG00000020042)	TOGARAM1 (ENSBTAG00000039117)	PRPF39 (ENSBTAG00000002603)	FKBP3 (ENSBTAG00000002610)	FANCM (ENSBTAG00000002612)	MIS18BP1 (ENSBTAG00000002613)	TGM5 (ENSBTAG00000032059)	TGM7 (ENSBTAG00000015412)	LCMT2 (ENSBTAG00000014472)	ADAL (ENSBTAG00000014476)	ZSCAN29 (ENSBTAG00000014478)	TUBGCP4 (ENSBTAG00000014479)	TP53BP1 (ENSBTAG00000021304)	MAP1A (ENSBTAG00000014001)	PPIP5K1 (ENSBTAG00000014005)	CKMT1A (ENSBTAG00000007502) ##22	STRC (ENSBTAG00000007503)	CATSPER2 (ENSBTAG00000032130)	PDIA3 (ENSBTAG00000017196)	ELL3 (ENSBTAG00000032132)	SERINC4 (ENSBTAG00000017211) ##13	SERF2 (ENSBTAG00000047694)	HYPK (ENSBTAG00000017212)	MFAP1 (ENSBTAG00000017213)	WDR76 (ENSBTAG00000017215)	FRMD5 (ENSBTAG00000017216)	ENSBTAG00000050803	GPR68 (ENSBTAG00000006738)	CCDC88C (ENSBTAG00000000838)	PPP4R3A (ENSBTAG00000005040)	CATSPERB (ENSBTAG00000018709)
Hybrid Bos Indicus	MODERN SPECIES	13	PRPF39 (ENSBIXG00005003875)	FKBP3 (ENSBIXG00005022615)	FANCM (ENSBIXG00005003848)	MIS18BP1 (ENSBIXG00005022453)	TGM5 (ENSBIXG00005022351)	TGM7 (ENSBIXG00005007684)	ENSBIXG00005022081	ADAL (ENSBIXG00005003738)	ZSCAN29 (ENSBIXG00005003716)	TUBGCP4 (ENSBIXG00005021952)	TP53BP1 (ENSBIXG00005003683)	ENSBIXG00005021480	ENSBIXG00005021468	MAP1A (ENSBIXG00005006603)	PPIP5K1 (ENSBIXG00005021355)	ENSBIXG00005021187 ##22	STRC (ENSBIXG00005003564)	ENSBIXG00005021004	ENSBIXG00005020986	PDIA3 (ENSBIXG00005020936)	ELL3 (ENSBIXG00005020863)	ENSBIXG00005020851	ENSBIXG00005020847	SERINC4 (ENSBIXG00005020795) ##13	HYPK (ENSBIXG00005020714)	MFAP1 (ENSBIXG00005003496)	WDR76 (ENSBIXG00005003486)	FRMD5 (ENSBIXG00005020536)	ENSBIXG00005003381	GPR68 (ENSBIXG00005020226)	CCDC88C (ENSBIXG00005020192)
American bison	MODERN SPECIES	2995	TOGARAM1 (ENSBBBG00000010314)	PRPF39 (ENSBBBG00000001768)	FKBP3 (ENSBBBG00000001759)	FANCM (ENSBBBG00000010273)	MIS18BP1 (ENSBBBG00000000076)	TGM5 (ENSBBBG00000000107)	TGM7 (ENSBBBG00000000134)	ENSBBBG00000010254	ADAL (ENSBBBG00000010250)	ZSCAN29 (ENSBBBG00000010223)	TUBGCP4 (ENSBBBG00000001730)	TP53BP1 (ENSBBBG00000007206)	MAP1A (ENSBBBG00000010096)	PPIP5K1 (ENSBBBG00000010069)	ENSBBBG00000009999	ENSBBBG00000009994 ##22	STRC (ENSBBBG00000009976)	ENSBBBG00000009961	PDIA3 (ENSBBBG00000008276)	ELL3 (ENSBBBG00000009951)	ENSBBBG00000007160	SERINC4 (ENSBBBG00000001662) ##13	HYPK (ENSBBBG00000009932)	MFAP1 (ENSBBBG00000009922)	WDR76 (ENSBBBG00000009914)	FRMD5 (ENSBBBG00000009894)	ENSBBBG00000009869	ENSBBBG00000009859	GPR68 (ENSBBBG00000009852)	ENSBBBG00000009849	ENSBBBG00000001648
Camelidae	ANCESTRAL SPECIES	23	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00900000143426	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00950000183254	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b
Alpaca	MODERN SPECIES	2082	ENSVPAG00000006262	CDAN1 (ENSVPAG00000006263)	TTBK2 (ENSVPAG00000006264)	UBR1 (ENSVPAG00000006265)	TMEM62 (ENSVPAG00000006268)	CCNDBP1 (ENSVPAG00000006270)	ENSVPAG00000006273	ENSVPAG00000006275	ENSVPAG00000006276	ENSVPAG00000006279	ENSVPAG00000006281	ZSCAN29 (ENSVPAG00000006282)	TUBGCP4 (ENSVPAG00000006283)	TP53BP1 (ENSVPAG00000006285)	PPIP5K1 (ENSVPAG00000006288)	ENSVPAG00000006289 ##22	STRC (ENSVPAG00000006290)	CATSPER2 (ENSVPAG00000006291)	ENSVPAG00000006292	PDIA3 (ENSVPAG00000006293)	ELL3 (ENSVPAG00000006294)	SERINC4 (ENSVPAG00000006295) ##13	ENSVPAG00000006297	WDR76 (ENSVPAG00000006299)	FRMD5 (ENSVPAG00000006302)	GOLM2 (ENSVPAG00000006303)	CTDSPL2 (ENSVPAG00000006306)	EIF3J (ENSVPAG00000006308)	SPG11 (ENSVPAG00000006309)	B2M (ENSVPAG00000006311)	TRIM69 (ENSVPAG00000006312)
Arabian camel	MODERN SPECIES	32	UBR1 (ENSCDRG00005015457)	TMEM62 (ENSCDRG00005015348)	CCNDBP1 (ENSCDRG00005015312)	EPB42 (ENSCDRG00005014889)	TGM5 (ENSCDRG00005014574)	TGM7 (ENSCDRG00005014441)	ENSCDRG00005014405	ADAL (ENSCDRG00005014299)	ENSCDRG00005014268	ZSCAN29 (ENSCDRG00005014188)	TUBGCP4 (ENSCDRG00005014063)	TP53BP1 (ENSCDRG00005013494)	MAP1A (ENSCDRG00005013433)	ENSCDRG00005013396	PPIP5K1 (ENSCDRG00005012914)	ENSCDRG00005012811 ##22	STRC (ENSCDRG00005012570)	CATSPER2 (ENSCDRG00005012429)	PDIA3 (ENSCDRG00005012333)	ELL3 (ENSCDRG00005012228)	ENSCDRG00005012073	SERINC4 (ENSCDRG00005011805) ##13	HYPK (ENSCDRG00005011772)	MFAP1 (ENSCDRG00005011716)	WDR76 (ENSCDRG00005011538)	FRMD5 (ENSCDRG00005011213)	GOLM2 (ENSCDRG00005011042)	CTDSPL2 (ENSCDRG00005010912)	EIF3J (ENSCDRG00005010710)	SPG11 (ENSCDRG00005010417)	PATL2 (ENSCDRG00005010156)
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00390000010318
Xenarthra	ANCESTRAL SPECIES	17	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000155425	ENSGT00940000161615	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00510000048144	ENSGT00940000156346	ENSGT00530000063675.a	ENSGT01040000240503.A.a.a	ENSGT00390000018400	ENSGT00390000016791	ENSGT00520000055649.b	ENSGT00690000102227
Armadillo	MODERN SPECIES	2343	TTBK2 (ENSDNOG00000001300)	UBR1 (ENSDNOG00000009562)	TMEM62 (ENSDNOG00000009653)	CCNDBP1 (ENSDNOG00000009668)	EPB42 (ENSDNOG00000009688)	TGM5 (ENSDNOG00000043437)	TGM7 (ENSDNOG00000016771)	LCMT2 (ENSDNOG00000035152)	ADAL (ENSDNOG00000016774)	ZSCAN29 (ENSDNOG00000018427)	TUBGCP4 (ENSDNOG00000018430)	TP53BP1 (ENSDNOG00000018435)	ENSDNOG00000025296	MAP1A (ENSDNOG00000047149)	PPIP5K1 (ENSDNOG00000005820)	ENSDNOG00000045635 ##22	STRC (ENSDNOG00000049170)	PDIA3 (ENSDNOG00000046246)	ELL3 (ENSDNOG00000017756)	ENSDNOG00000025123	HYPK (ENSDNOG00000006092)	MFAP1 (ENSDNOG00000006125)	WDR76 (ENSDNOG00000004729)	FRMD5 (ENSDNOG00000043593)	ENSDNOG00000043777	GOLM2 (ENSDNOG00000017815)	CTDSPL2 (ENSDNOG00000000228)	EIF3J (ENSDNOG00000042545)	SPG11 (ENSDNOG00000000762)	ENSDNOG00000032325	PATL2 (ENSDNOG00000036837)
Sloth	MODERN SPECIES	5670																ENSCHOG00000003389 ##22	ENSCHOG00000003407
Afrotheria	ANCESTRAL SPECIES	37	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b
Afrotheria_a	ANCESTRAL SPECIES	38	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.b.b	ENSGT00940000162599	ENSGT00950000183113.b.a	ENSGT00940000161523	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b
Elephant	MODERN SPECIES	498	CDAN1 (ENSLAFG00000006721)	TTBK2 (ENSLAFG00000006729)	UBR1 (ENSLAFG00000003315)	TMEM62 (ENSLAFG00000004492)	CCNDBP1 (ENSLAFG00000004497)	EPB42 (ENSLAFG00000004499)	TGM5 (ENSLAFG00000023369)	TGM7 (ENSLAFG00000016251)	LCMT2 (ENSLAFG00000031440)	ADAL (ENSLAFG00000022969)	ZSCAN29 (ENSLAFG00000001195)	TUBGCP4 (ENSLAFG00000001196)	TP53BP1 (ENSLAFG00000001197)	MAP1A (ENSLAFG00000001202)	PPIP5K1 (ENSLAFG00000027623)	ENSLAFG00000001204 ##22	STRC (ENSLAFG00000031348)
Hyrax	MODERN SPECIES	5222																ENSPCAG00000014310 ##22	STRC (ENSPCAG00000014360)
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	6197									LCMT2 (ENSETEG00000019729)	ENSETEG00000019731	ZSCAN29 (ENSETEG00000019734)	TUBGCP4 (ENSETEG00000019735)	TP53BP1 (ENSETEG00000019738)	MAP1A (ENSETEG00000019742)	PPIP5K1 (ENSETEG00000019745)	ENSETEG00000019748 ##22	STRC (ENSETEG00000019749)
Tenrec	MODERN SPECIES	10458																ENSETEG00000011041 ##22
Sauria	ANCESTRAL SPECIES	10										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474
Lepidosauria	ANCESTRAL SPECIES	19											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000160962.n	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000165481	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813
Episquamata	ANCESTRAL SPECIES	9											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000160962.n	ENSGT00940000164669	ENSGT00940000155425	ENSGT00940000165481	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813
Laterata	ANCESTRAL SPECIES	16											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000160962.n	ENSGT00940000155425	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00390000014472
Common wall lizard	MODERN SPECIES	5	HS3ST4 (ENSPMRG00000023364)	KDM8 (ENSPMRG00000023359)	NSMCE1 (ENSPMRG00000023358)	ENSPMRG00000023357	IL21R (ENSPMRG00000023353)	PDPK1 (ENSPMRG00000023345)	KCTD5 (ENSPMRG00000023342)	UBE2I (ENSPMRG00000023339)	TSR3 (ENSPMRG00000023335)	GNPTG (ENSPMRG00000023331)	IQGAP1 (ENSPMRG00000023123)	TUBGCP4 (ENSPMRG00000023038)	TP53BP1 (ENSPMRG00000023030)	MAP1A (ENSPMRG00000023021)	PPIP5K1 (ENSPMRG00000022980)	ENSPMRG00000022960 ##22	STRC (ENSPMRG00000022942)	ENSPMRG00000022929	PDIA3 (ENSPMRG00000022923)	ENSPMRG00000022916	SERINC4 (ENSPMRG00000022913) ##13	ENSPMRG00000022911	MFAP1 (ENSPMRG00000022905)	FURIN (ENSPMRG00000022898)	ENSPMRG00000022872	ENSPMRG00000022854	MAN2A2 (ENSPMRG00000022837)	UNC45A (ENSPMRG00000022830)	ENSPMRG00000022825	PRC1 (ENSPMRG00000022818)	VPS33B (ENSPMRG00000022814)
Argentine black and white tegu	MODERN SPECIES	46										ENSSMRG00000019439	ENSSMRG00000019440	IQGAP1 (ENSSMRG00000019441)	TUBGCP4 (ENSSMRG00000019442)	MAP1A (ENSSMRG00000019443)	PPIP5K1 (ENSSMRG00000019444)	ENSSMRG00000019445 ##22	ENSSMRG00000019446	PDIA3 (ENSSMRG00000019447)	SERINC4 (ENSSMRG00000019449) ##13	HYPK (ENSSMRG00000019450)	MFAP1 (ENSSMRG00000019451)	FURIN (ENSSMRG00000019452)	FES (ENSSMRG00000019453)	MAN2A2 (ENSSMRG00000019623)	UNC45A (ENSSMRG00000020809)	ENSSMRG00000021149	PRC1 (ENSSMRG00000021158)	VPS33B (ENSSMRG00000021324)	HDDC3 (ENSSMRG00000021521)	TTLL13 (ENSSMRG00000021522)	GDPGP1 (ENSSMRG00000021523)
Toxicofera	ANCESTRAL SPECIES	67											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608
Lizard	MODERN SPECIES	1358																ENSACAG00000004960 ##22	PDIA3 (ENSACAG00000004882)	ENSACAG00000004837	SERINC4 (ENSACAG00000004811) ##13	HYPK (ENSACAG00000004800)	MFAP1 (ENSACAG00000004763)	FURIN (ENSACAG00000004561)	FES (ENSACAG00000004439)	MAN2A2 (ENSACAG00000004290)	UNC45A (ENSACAG00000022998)	ENSACAG00000004250	PRC1 (ENSACAG00000004206)	VPS33B (ENSACAG00000004054)
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000154870.D	ENSGT00940000158927	ENSGT00390000016718	ENSGT00940000161367	ENSGT00390000014472	ENSGT00940000164520	ENSGT00940000155837	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000164669	ENSGT00940000155425	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00940000154870.D	ENSGT00940000158927	ENSGT00390000016718	ENSGT00940000161367	ENSGT00390000014472	ENSGT00940000164520	ENSGT00940000155837	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000164669	ENSGT00940000155425	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00940000154870.D	ENSGT00940000158927	ENSGT00390000016718	ENSGT00940000161367	ENSGT00390000014472	ENSGT00940000164520	ENSGT00940000155837	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00950000182965.a.b.b.a	ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000164669	ENSGT00940000155425	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000165395	ENSGT00940000156813	ENSGT00390000011608
Mainland tiger snake	MODERN SPECIES	231	ZNF710 (ENSNSUG00000020267)	IDH2 (ENSNSUG00000020259)	SEMA4B (ENSNSUG00000020258)	CIB1 (ENSNSUG00000020257)	GDPGP1 (ENSNSUG00000020256)	TTLL13 (ENSNSUG00000020255)	KIF23 (ENSNSUG00000020253)	TLE3 (ENSNSUG00000020252)	UACA (ENSNSUG00000020251)	MORF4L2 (ENSNSUG00000020250)	IQGAP1 (ENSNSUG00000020234)	TUBGCP4 (ENSNSUG00000020233)	ENSNSUG00000020232	MAP1A (ENSNSUG00000020229)	PPIP5K1 (ENSNSUG00000020218)	ENSNSUG00000020205 ##22	ENSNSUG00000020204	PDIA3 (ENSNSUG00000020203)	HYPK (ENSNSUG00000020202)	MFAP1 (ENSNSUG00000020201)	FURIN (ENSNSUG00000020200)	FES (ENSNSUG00000020199)	MAN2A2 (ENSNSUG00000020173)	UNC45A (ENSNSUG00000020109)	ENSNSUG00000020108	VPS33B (ENSNSUG00000020107)	HDDC3 (ENSNSUG00000020106)
Eastern brown snake	MODERN SPECIES	43	IDH2 (ENSPTXG00000015434)	SEMA4B (ENSPTXG00000015433)	CIB1 (ENSPTXG00000015432)	GDPGP1 (ENSPTXG00000015430)	TTLL13 (ENSPTXG00000015428)	ENSPTXG00000015426	ENSPTXG00000015425	KIF23 (ENSPTXG00000015417)	TLE3 (ENSPTXG00000015273)	UACA (ENSPTXG00000015260)	MORF4L2 (ENSPTXG00000015254)	IQGAP1 (ENSPTXG00000009968)	TUBGCP4 (ENSPTXG00000009925)	MAP1A (ENSPTXG00000009910)	PPIP5K1 (ENSPTXG00000009857)	ENSPTXG00000009854 ##22	ENSPTXG00000009853	PDIA3 (ENSPTXG00000009852)	HYPK (ENSPTXG00000009851)	MFAP1 (ENSPTXG00000009849)	FURIN (ENSPTXG00000009848)	FES (ENSPTXG00000009845)	MAN2A2 (ENSPTXG00000009708)	UNC45A (ENSPTXG00000009706)	ENSPTXG00000009705	VPS33B (ENSPTXG00000009703)	HDDC3 (ENSPTXG00000009701)
Blue-lipped sea krait	MODERN SPECIES	7546														MAP1A (ENSLLTG00000017952)	PPIP5K1 (ENSLLTG00000005783)	ENSLLTG00000005521 ##22	ENSLLTG00000005519	PDIA3 (ENSLLTG00000005496)	HYPK (ENSLLTG00000005475)
Indian cobra	MODERN SPECIES	14	SEMA4B (ENSNNAG00000016058)	CIB1 (ENSNNAG00000016075)	GDPGP1 (ENSNNAG00000016088)	TTLL13 (ENSNNAG00000016096)	ENSNNAG00000016158	ENSNNAG00000016169	KIF23 (ENSNNAG00000016252)	TLE3 (ENSNNAG00000016943)	UACA (ENSNNAG00000016986)	MORF4L2 (ENSNNAG00000017007)	IQGAP1 (ENSNNAG00000017038)	TUBGCP4 (ENSNNAG00000017090)	ENSNNAG00000017106	MAP1A (ENSNNAG00000017114)	PPIP5K1 (ENSNNAG00000017135)	ENSNNAG00000017320 ##22	ENSNNAG00000017328	PDIA3 (ENSNNAG00000017334)	HYPK (ENSNNAG00000017347)	MFAP1 (ENSNNAG00000017356)	FURIN (ENSNNAG00000017385)	ENSNNAG00000017505	MAN2A2 (ENSNNAG00000017516)	UNC45A (ENSNNAG00000017591)	PRC1 (ENSNNAG00000017780)	VPS33B (ENSNNAG00000017790)	HDDC3 (ENSNNAG00000017799)
Archelosauria	ANCESTRAL SPECIES	13										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474
Archosauria	ANCESTRAL SPECIES	9										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320
Aves	ANCESTRAL SPECIES	14										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320
Neognathae	ANCESTRAL SPECIES	11										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520
Galloanserae	ANCESTRAL SPECIES	10										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT01030000235224	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT00940000165251	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520
Anatidae	ANCESTRAL SPECIES	36										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT01030000235224	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000164082	ENSGT00940000165251	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00940000161367
Pink-footed goose	MODERN SPECIES	52									IQGAP1 (ENSABRG00000004074)	TUBGCP4 (ENSABRG00000004187)	TP53BP1 (ENSABRG00000004209)	ENSABRG00000004225	MAP1A (ENSABRG00000004231)	PPIP5K1 (ENSABRG00000004270)	ENSABRG00000004325	ENSABRG00000004356 ##22	PDIA3 (ENSABRG00000004402)	ENSABRG00000004414	ENSABRG00000004429	ENSABRG00000004448	SERINC4 (ENSABRG00000004460) ##13	MFAP1 (ENSABRG00000004507)	FURIN (ENSABRG00000004517)	FES (ENSABRG00000004539)	MAN2A2 (ENSABRG00000004608)	UNC45A (ENSABRG00000004685)	ENSABRG00000004728	PRC1 (ENSABRG00000004796)	VPS33B (ENSABRG00000004867)	TTLL13 (ENSABRG00000005796)	GDPGP1 (ENSABRG00000005831)
Duck	MODERN SPECIES	2											IQGAP1 (ENSAPLG00000011175)	TUBGCP4 (ENSAPLG00000010724)	TP53BP1 (ENSAPLG00000010574)	MAP1A (ENSAPLG00000027744)	PPIP5K1 (ENSAPLG00000010796)	ENSAPLG00000010625 ##22	PDIA3 (ENSAPLG00000010321)	ELL3 (ENSAPLG00000023858)	FURIN (ENSAPLG00000005906)	FES (ENSAPLG00000005644)	UNC45A (ENSAPLG00000004720)	MAN2A2 (ENSAPLG00000005234)	TTLL13 (ENSAPLG00000003844)	CIB1 (ENSAPLG00000010975)	SEMA4B (ENSAPLG00000010610)	VPS33B (ENSAPLG00000003869)	IDH2 (ENSAPLG00000027640)	ZNF710 (ENSAPLG00000026218)	AP3S2 (ENSAPLG00000005458)	ANPEP (ENSAPLG00000005574)	ENSAPLG00000017865
Phasianidae	ANCESTRAL SPECIES	11											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT00940000165251	ENSGT00910000144347	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453
Japanese quail	MODERN SPECIES	1											IQGAP1 (ENSCJPG00005000665)	TUBGCP4 (ENSCJPG00005000655)	TP53BP1 (ENSCJPG00005000653)	MAP1A (ENSCJPG00005000644)	PPIP5K1 (ENSCJPG00005000591)	ENSCJPG00005000562 ##22	PDIA3 (ENSCJPG00005000556)	ENSCJPG00005000552	SERINC4 (ENSCJPG00005000546) ##13	HYPK (ENSCJPG00005000368)	MFAP1 (ENSCJPG00005000359)	FURIN (ENSCJPG00005000344)	MAN2A2 (ENSCJPG00005000059)	UNC45A (ENSCJPG00005021161)	ENSCJPG00005021160	PRC1 (ENSCJPG00005021159)	HDDC3 (ENSCJPG00005021147)	TTLL13 (ENSCJPG00005021146)	GDPGP1 (ENSCJPG00005021145)	CIB1 (ENSCJPG00005021144)	SEMA4B (ENSCJPG00005021143)
Phasianidae_b	ANCESTRAL SPECIES	11											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT00940000165251	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608
Chicken	MODERN SPECIES	1											IQGAP3 (ENSGALG00010000047)	TUBGCP4 (ENSGALG00010000046)	TP53BP1 (ENSGALG00010000045)	MAP1A (ENSGALG00010000044)	PPIP5K1 (ENSGALG00010000043)	CKMT1B (ENSGALG00010000042) ##22	ENSGALG00010000041	PDIA3 (ENSGALG00010000039)	ENSGALG00010000040	SERF2 (ENSGALG00010000063)	ENSGALG00010000062	SERINC4 (ENSGALG00010000061) ##13	HYPK (ENSGALG00010000060)	MFAP1 (ENSGALG00010000059)	FURIN (ENSGALG00010000058)	FES (ENSGALG00010000049)	MAN2A2 (ENSGALG00010000048)	ENSGALG00010000057	UNC45A (ENSGALG00010000056)	PRC1 (ENSGALG00010000055)	VPS33B (ENSGALG00010000054)
Turkey	DUPLICATION
Turkey	MODERN SPECIES	3	ENSMGAG00000021657	SEMA4B (ENSMGAG00000010484)	ENSMGAG00000010525	ENSMGAG00000020677	ENSMGAG00000010652	ENSMGAG00000010721	ENSMGAG00000010738	ENSMGAG00000010746	ENSMGAG00000010444	ENSMGAG00000010594	SERINC4 (ENSMGAG00000010567) ##13	ENSMGAG00000010563	MFAP1 (ENSMGAG00000018931)	ENSMGAG00000019676	PDIA3 (ENSMGAG00000010531)	ENSMGAG00000010549 ##22	ENSMGAG00000019473 ##22	ENSMGAG00000010658	MAP1A (ENSMGAG00000010631)	ENSMGAG00000021185	ENSMGAG00000010769	ENSMGAG00000010760	ENSMGAG00000010793
Turkey	MODERN SPECIES	3	SEMA4B (ENSMGAG00000010484)	ENSMGAG00000010525	ENSMGAG00000020677	ENSMGAG00000010652	ENSMGAG00000010721	ENSMGAG00000010738	ENSMGAG00000010746	ENSMGAG00000010444	ENSMGAG00000010594	SERINC4 (ENSMGAG00000010567) ##13	ENSMGAG00000010563	MFAP1 (ENSMGAG00000018931)	ENSMGAG00000019676	PDIA3 (ENSMGAG00000010531)	ENSMGAG00000010549 ##22	ENSMGAG00000019473 ##22	ENSMGAG00000010658	MAP1A (ENSMGAG00000010631)	ENSMGAG00000021185	ENSMGAG00000010769	ENSMGAG00000010760	ENSMGAG00000010793
Neognathae_b	ANCESTRAL SPECIES	13										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608
Neognathae_c	ANCESTRAL SPECIES	15											ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608
Golden eagle	MODERN SPECIES	21	ENSACCG00020003897	ENSACCG00020003887	ENSACCG00020003881	ENSACCG00020003872	ENSACCG00020003866	ENSACCG00020003856	ENSACCG00020003847	ENSACCG00020003826	ENSACCG00020003805	IQGAP1 (ENSACCG00020003721)	TUBGCP4 (ENSACCG00020003663)	TP53BP1 (ENSACCG00020003633)	ENSACCG00020003606	MAP1A (ENSACCG00020003591)	PPIP5K1 (ENSACCG00020003426)	ENSACCG00020003302 ##22	ENSACCG00020003272	ENSACCG00020003242	ENSACCG00020003231	PDIA3 (ENSACCG00020003197)	ENSACCG00020003165	SERINC4 (ENSACCG00020003125) ##13	HYPK (ENSACCG00020003072)	MFAP1 (ENSACCG00020003062)	FURIN (ENSACCG00020003041)	FES (ENSACCG00020003018)	MAN2A2 (ENSACCG00020002977)	UNC45A (ENSACCG00020002907)	ENSACCG00020002873	PRC1 (ENSACCG00020002843)	VPS33B (ENSACCG00020002805)
Kakapo	MODERN SPECIES	1										ENSSHBG00005006712	IQGAP1 (ENSSHBG00005006734)	TUBGCP4 (ENSSHBG00005006776)	TP53BP1 (ENSSHBG00005006823)	MAP1A (ENSSHBG00005006924)	PPIP5K1 (ENSSHBG00005007057)	ENSSHBG00005007208 ##22	PDIA3 (ENSSHBG00005007245)	ENSSHBG00005007278	SERF2 (ENSSHBG00005007293)	SERINC4 (ENSSHBG00005007317) ##13	HYPK (ENSSHBG00005007369)	MFAP1 (ENSSHBG00005007378)	FURIN (ENSSHBG00005007398)	FES (ENSSHBG00005007427)	MAN2A2 (ENSSHBG00005007460)	UNC45A (ENSSHBG00005007486)	ENSSHBG00005007513	PRC1 (ENSSHBG00005007544)	VPS33B (ENSSHBG00005007592)	HDDC3 (ENSSHBG00005007632)	ENSSHBG00005007645
Passeriformes	ANCESTRAL SPECIES	12										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367
Passeriformes_d	ANCESTRAL SPECIES	12										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00390000011608	ENSGT00940000161367
Flycatcher	MODERN SPECIES	1											ENSFALG00000011432	TUBGCP4 (ENSFALG00000011417)	TP53BP1 (ENSFALG00000011406)	MAP1A (ENSFALG00000024931)	PPIP5K1 (ENSFALG00000011369)	ENSFALG00000011335 ##22	PDIA3 (ENSFALG00000011295)	ENSFALG00000011282	SERINC4 (ENSFALG00000011259) ##13	HYPK (ENSFALG00000023556)	FURIN (ENSFALG00000011209)	ENSFALG00000011187	MAN2A2 (ENSFALG00000011174)	ENSFALG00000011242	UNC45A (ENSFALG00000011163)	ENSFALG00000011157	VPS33B (ENSFALG00000011098)	ENSFALG00000026266	TTLL13 (ENSFALG00000011077)	CIB1 (ENSFALG00000011064)	SEMA4B (ENSFALG00000011052)
Passeriformes_g	ANCESTRAL SPECIES	13										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00940000161367	ENSGT00390000016718
Medium ground finch	MODERN SPECIES	69										IQGAP1 (ENSGFOG00000001161)	TUBGCP4 (ENSGFOG00000001015)	TP53BP1 (ENSGFOG00000000929)	MAP1A (ENSGFOG00000000903)	ENSGFOG00000000889	PPIP5K1 (ENSGFOG00000000824)	ENSGFOG00000000243 ##22	PDIA3 (ENSGFOG00000013230)	SERINC4 (ENSGFOG00000013228) ##13	HYPK (ENSGFOG00000013226)	MFAP1 (ENSGFOG00000013223)	FURIN (ENSGFOG00000013221)	FES (ENSGFOG00000013212)	MAN2A2 (ENSGFOG00000013198)	UNC45A (ENSGFOG00000013142)	PRC1 (ENSGFOG00000013124)	VPS33B (ENSGFOG00000013122)	TTLL13 (ENSGFOG00000013119)	ENSGFOG00000013116	SEMA4B (ENSGFOG00000013115)	IDH2 (ENSGFOG00000013114)	ENSGFOG00000013112
Passeroidea	ANCESTRAL SPECIES	12										ENSGT00950000183076.a.b.b.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00940000159320	ENSGT00940000164520	ENSGT00390000009453	ENSGT00940000156813	ENSGT00940000161367	ENSGT00390000016718
Zebra finch	MODERN SPECIES	1											IQGAP1 (ENSTGUG00000010390)	TUBGCP4 (ENSTGUG00000010347)	TP53BP1 (ENSTGUG00000010331)	MAP1A (ENSTGUG00000019635)	PPIP5K1 (ENSTGUG00000010276)	ENSTGUG00000010247 ##22	PDIA3 (ENSTGUG00000010220)	ENSTGUG00000010206	SERF2 (ENSTGUG00000029530)	SERINC4 (ENSTGUG00000010186) ##13	HYPK (ENSTGUG00000010184)	FURIN (ENSTGUG00000010132)	MFAP1 (ENSTGUG00000010162)	FES (ENSTGUG00000010113)	MAN2A2 (ENSTGUG00000010087)	UNC45A (ENSTGUG00000010052)	ENSTGUG00000025741	PRC1 (ENSTGUG00000021109)	VPS33B (ENSTGUG00000025670)	TTLL13 (ENSTGUG00000010033)	GDPGP1 (ENSTGUG00000023394)
Common canary	MODERN SPECIES	12								ENSSCAG00000014882	ENSSCAG00000014879	ENSSCAG00000014871	TUBGCP4 (ENSSCAG00000014852)	TP53BP1 (ENSSCAG00000014794)	MAP1A (ENSSCAG00000014746)	ENSSCAG00000014740	PPIP5K1 (ENSSCAG00000014713)	ENSSCAG00000014694 ##22	PDIA3 (ENSSCAG00000014470)	SERINC4 (ENSSCAG00000014400) ##13	ENSSCAG00000014396	MFAP1 (ENSSCAG00000014392)	FURIN (ENSSCAG00000014387)	FES (ENSSCAG00000014381)	MAN2A2 (ENSSCAG00000014295)	UNC45A (ENSSCAG00000014259)	PRC1 (ENSSCAG00000014249)	ENSSCAG00000014241	VPS33B (ENSSCAG00000014226)	TTLL13 (ENSSCAG00000014214)	CIB1 (ENSSCAG00000014212)	SEMA4B (ENSSCAG00000014205)	IDH2 (ENSSCAG00000014199)
Great tit	MODERN SPECIES	1											IQGAP1 (ENSPMJG00000012040)	TUBGCP4 (ENSPMJG00000012039)	TP53BP1 (ENSPMJG00000012038)	MAP1A (ENSPMJG00000012037)	PPIP5K1 (ENSPMJG00000012036)	ENSPMJG00000012035 ##22	PDIA3 (ENSPMJG00000012034)	ENSPMJG00000012033	ENSPMJG00000012032	SERINC4 (ENSPMJG00000012031) ##13	HYPK (ENSPMJG00000012030)	MFAP1 (ENSPMJG00000012029)	FURIN (ENSPMJG00000012028)	FES (ENSPMJG00000012027)	MAN2A2 (ENSPMJG00000012026)	UNC45A (ENSPMJG00000012025)	ENSPMJG00000012024	PRC1 (ENSPMJG00000012022)	VPS33B (ENSPMJG00000012016)	HDDC3 (ENSPMJG00000012013)	TTLL13 (ENSPMJG00000012011)
Cryptodira	ANCESTRAL SPECIES	79									ENSGT00950000183076.a.b.b.a.a	ENSGT00390000018319.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000161615	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881
Testudinoidea	ANCESTRAL SPECIES	6									ENSGT00950000183076.a.b.b.a.a.k	ENSGT00390000018319.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881.a	ENSGT01030000234638.b.b.c.a.o.b	ENSGT01030000234638.b.b.c.a.o.a	ENSGT00940000159320	ENSGT00940000164520
Emydidae	ANCESTRAL SPECIES	21									ENSGT00950000183076.a.b.b.a.a.k	ENSGT00390000018319.a.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881.a	ENSGT01030000234638.b.b.c.a.o.b	ENSGT01030000234638.b.b.c.a.p	ENSGT00940000159320	ENSGT00940000164520
painted turtle	MODERN SPECIES	742										IQGAP1 (ENSCPBG00000024124)	ENSCPBG00000024129	TUBGCP4 (ENSCPBG00000024133)	TP53BP1 (ENSCPBG00000024148)	MAP1A (ENSCPBG00000024158)	PPIP5K1 (ENSCPBG00000024219)	ENSCPBG00000024424 ##22	STRC (ENSCPBG00000024425)	ENSCPBG00000024428	ENSCPBG00000024432	PDIA3 (ENSCPBG00000024436)	ENSCPBG00000024440	ENSCPBG00000024441	SERF2 (ENSCPBG00000024443)	SERINC4 (ENSCPBG00000024444) ##13	HYPK (ENSCPBG00000024446)	MFAP1 (ENSCPBG00000024449)	FURIN (ENSCPBG00000024451)	FES (ENSCPBG00000024453)	ENSCPBG00000024459	ENSCPBG00000024463	UNC45A (ENSCPBG00000024468)
Three-toed box turtle	MODERN SPECIES	27									IQGAP1 (ENSTMTG00000002820)	ENSTMTG00000002699	TUBGCP4 (ENSTMTG00000002313)	TP53BP1 (ENSTMTG00000002239)	MAP1A (ENSTMTG00000002225)	ENSTMTG00000002215	PPIP5K1 (ENSTMTG00000002123)	ENSTMTG00000002084 ##22	ENSTMTG00000002050	ENSTMTG00000002038	ENSTMTG00000002015	CATSPER2 (ENSTMTG00000001885)	PDIA3 (ENSTMTG00000001846)	ENSTMTG00000001841	ENSTMTG00000001836	SERINC4 (ENSTMTG00000001823) ##13	HYPK (ENSTMTG00000001815)	MFAP1 (ENSTMTG00000001809)	FURIN (ENSTMTG00000001794)	MAN2A2 (ENSTMTG00000001757)	UNC45A (ENSTMTG00000001455)	ENSTMTG00000001393	PRC1 (ENSTMTG00000001377)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00390000004097.b	ENSGT00940000160472	ENSGT00390000010652.B	ENSGT00940000157062	ENSGT00940000160806	ENSGT00950000183076.a.b.b.a.a.k	ENSGT00390000018319.a.a	ENSGT00390000016136	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT01030000235224	ENSGT00390000009048.a.a	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00940000164669	ENSGT00910000144338	ENSGT00940000155425	ENSGT00940000165481	ENSGT00940000164082	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881.a	ENSGT01030000234638.b.b.c.a.o.b	ENSGT01030000234638.b.b.c.a.o.a	ENSGT00940000159320	ENSGT00940000164520
Goode s thornscrub tortoise	MODERN SPECIES	1											IQGAP1 (ENSGEVG00005007028)	TUBGCP4 (ENSGEVG00005007176)	TP53BP1 (ENSGEVG00005007242)	MAP1A (ENSGEVG00005007359)	PPIP5K1 (ENSGEVG00005007604)	ENSGEVG00005007852 ##22	STRC (ENSGEVG00005007929)	ENSGEVG00005008049	CATSPER2 (ENSGEVG00005008070)	PDIA3 (ENSGEVG00005008125)	ENSGEVG00005008142	ENSGEVG00005008164	SERF2 (ENSGEVG00005008200)	SERINC4 (ENSGEVG00005008230) ##13	HYPK (ENSGEVG00005008270)	MFAP1 (ENSGEVG00005008283)	FURIN (ENSGEVG00005008313)	FES (ENSGEVG00005008384)	MAN2A2 (ENSGEVG00005008562)	UNC45A (ENSGEVG00005008660)	ENSGEVG00005008729
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1798																ENSCABG00000008915 ##22	ENSCABG00000008919	ENSCABG00000008921	ENSCABG00000008923	CATSPER2 (ENSCABG00000008929)	PDIA3 (ENSCABG00000008933)	ENSCABG00000008936	SERF2 (ENSCABG00000008938)	SERINC4 (ENSCABG00000008941) ##13	ENSCABG00000008942	HYPK (ENSCABG00000008943)	MFAP1 (ENSCABG00000008946)	FURIN (ENSCABG00000008948)	ENSCABG00000008950	ENSCABG00000008955	ENSCABG00000008965
Abingdon island giant tortoise	MODERN SPECIES	2653									IQGAP1 (ENSCABG00000004587)	ENSCABG00000004514	TUBGCP4 (ENSCABG00000003765)	ENSCABG00000003752	MAP1A (ENSCABG00000003698)	ENSCABG00000003680	PPIP5K1 (ENSCABG00000002157)	ENSCABG00000002134 ##22
Anura	ANCESTRAL SPECIES		ENSGT00940000158143	ENSGT00390000007252.d	ENSGT00550000074806	ENSGT00940000160013	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00390000010652.C	ENSGT00950000183076.a.b.b.a.a	ENSGT00390000018319.b.a	ENSGT00940000156677	ENSGT00390000011891	ENSGT00940000158701	ENSGT00390000009048.a.a	ENSGT01030000235224	ENSGT00950000182772.B.a.b ##22	ENSGT00950000182957.a.a.b	ENSGT00950000182957.a.b	ENSGT00940000164669	ENSGT00940000155425	ENSGT00940000165481	ENSGT01000000215232	ENSGT00940000165251	ENSGT01030000234623.a.b.b ##13	ENSGT00390000008502	ENSGT00690000102225	ENSGT00940000157220	ENSGT00940000158881	ENSGT01030000234638.b.b.c.a	ENSGT00950000185474	ENSGT00940000159320
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000018849	TUBGCP4 (ENSLLEG00000018945)	TP53BP1 (ENSLLEG00000019830)	ENSLLEG00000020602	ENSLLEG00000020634	MAP1A (ENSLLEG00000020677)	ENSLLEG00000020764	ENSLLEG00000020789	PPIP5K1 (ENSLLEG00000020827)	ENSLLEG00000022009	ENSLLEG00000022066	ENSLLEG00000022103	ENSLLEG00000022148	ENSLLEG00000022174	ENSLLEG00000022211	ENSLLEG00000022294 ##22	ENSLLEG00000022474 ##22	ENSLLEG00000022712	ENSLLEG00000022897	ENSLLEG00000022966	PDIA3 (ENSLLEG00000023040)	ENSLLEG00000023525	ENSLLEG00000023861	NFS1 (ENSLLEG00000023929)	ENSLLEG00000023970	ENSLLEG00000004316	ENSLLEG00000004332	SERINC4 (ENSLLEG00000004363) ##13	HYPK (ENSLLEG00000004382)	ENSLLEG00000004393	MFAP1 (ENSLLEG00000004412)
Leishan spiny toad	MODERN SPECIES	6	TUBGCP4 (ENSLLEG00000018945)	TP53BP1 (ENSLLEG00000019830)	ENSLLEG00000020602	ENSLLEG00000020634	MAP1A (ENSLLEG00000020677)	ENSLLEG00000020764	ENSLLEG00000020789	PPIP5K1 (ENSLLEG00000020827)	ENSLLEG00000022009	ENSLLEG00000022066	ENSLLEG00000022103	ENSLLEG00000022148	ENSLLEG00000022174	ENSLLEG00000022211	ENSLLEG00000022294 ##22	ENSLLEG00000022474 ##22	ENSLLEG00000022712	ENSLLEG00000022897	ENSLLEG00000022966	PDIA3 (ENSLLEG00000023040)	ENSLLEG00000023525	ENSLLEG00000023861	NFS1 (ENSLLEG00000023929)	ENSLLEG00000023970	ENSLLEG00000004316	ENSLLEG00000004332	SERINC4 (ENSLLEG00000004363) ##13	HYPK (ENSLLEG00000004382)	ENSLLEG00000004393	MFAP1 (ENSLLEG00000004412)	ENSLLEG00000004444
Frog	MODERN SPECIES	3	ENSXETG00000041937	ENSXETG00000048181	tmc3 (ENSXETG00000033353)	ENSXETG00000033640	stard5 (ENSXETG00000030995)	il16 (ENSXETG00000031478)	crtc3 (ENSXETG00000001294)	iqgap1 (ENSXETG00000001299)	XB5738351 [provisional:cartpt] (ENSXETG00000036821)	ENSXETG00000048601	mgc145330 (ENSXETG00000030744)	tubgcp4 (ENSXETG00000004708)	tp53bp1 (ENSXETG00000032616)	tnp (ENSXETG00000042424)	map1a (ENSXETG00000039005)	ckmt1b (ENSXETG00000027612) ##22	ppip5k1 (ENSXETG00000004653)	ENSXETG00000048900	STRC (ENSXETG00000034107)	slc39a1l (ENSXETG00000004651)	pdia3 (ENSXETG00000004650)	ell3 (ENSXETG00000027613)	serf2 (ENSXETG00000030949)	ENSXETG00000004647	ccdc93 (ENSXETG00000015491)	adamtsl5 (ENSXETG00000015490)	serinc4 (ENSXETG00000030610) ##13	hypk (ENSXETG00000015486)	mfap1 (ENSXETG00000015470)	rpl37a (ENSXETG00000015468)	furin (ENSXETG00000015462)
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000182772.B.b ##22
Elephant shark	MODERN SPECIES	1558	ENSCMIG00000008506	ENSCMIG00000008499	smn1 (ENSCMIG00000008498)	gtf2h2 (ENSCMIG00000008492)	oclna (ENSCMIG00000008487)	marveld2b (ENSCMIG00000008484)	rad17 (ENSCMIG00000008477)	ak6 (ENSCMIG00000008469)	CCDC125 (ENSCMIG00000008465)	ENSCMIG00000008449 #15	fam151b (ENSCMIG00000008433) #16	ankrd34bb (ENSCMIG00000008432) #17	ENSCMIG00000008430	msh3 (ENSCMIG00000008383) #19	rasgrf2b (ENSCMIG00000008165) #21	ENSCMIG00000008086 ##22	ENSCMIG00000008078	ENSCMIG00000008070 #26	SSBP2 (ENSCMIG00000008068) #25	zcchc9 (ENSCMIG00000008066) #23	tmem167a (ENSCMIG00000008065) #33	ENSCMIG00000008064	XRCC4 (ENSCMIG00000008062) #34	ENSCMIG00000008055 #35	HAPLN1 (ENSCMIG00000008051) #37	EDIL3 (ENSCMIG00000008045)	cox7c (ENSCMIG00000008038)	RASA1 (ENSCMIG00000007837)	ccnh (ENSCMIG00000007737)	tmem161b (ENSCMIG00000007646)
Cyclostomata	ANCESTRAL SPECIES	1277															ENSGT00940000165661	ENSGT00950000182772.B #22
Lamprey	MODERN SPECIES	5860																ckmt2b (ENSPMAG00000004586) #22
Hagfish	MODERN SPECIES	1519					ENSEBUG00000008342	ENSEBUG00000007044	ENSEBUG00000011402	ENSEBUG00000010276	ENSEBUG00000013693	ENSEBUG00000016409	ENSEBUG00000002996	cplx3a (ENSEBUG00000013563)	ENSEBUG00000002085	ENSEBUG00000015970 ##17	ENSEBUG00000005044	ckmt2b (ENSEBUG00000005528) #22	ENSEBUG00000013314
Ciona	DUPLICATION
Ciona	DUPLICATION
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES	705																ENSGT00950000182772.B.c.a.a #22	ENSGT00390000016407
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000010810	ENSCING00000008828	ENSCING00000008835	ENSCING00000008833	ENSCING00000008836	ENSCING00000021929	ENSCING00000009827	ENSCING00000020461	ENSCING00000013471	ENSCING00000021484	ENSCING00000020110	ENSCING00000013477	ENSCING00000023984	ENSCING00000013476	ENSCING00000008839	ENSCING00000008838 #22	ENSCING00000018889	ENSCING00000021596	ENSCING00000019472	ENSCING00000013472	ENSCING00000023689	ENSCING00000008841	ENSCING00000023782	ENSCING00000008840	ENSCING00000020504	ENSCING00000008843	ENSCING00000008842	ENSCING00000021739	ENSCING00000008844	ENSCING00000008846	ENSCING00000020771
Ciona savignyi	MODERN SPECIES	70				ENSCSAVG00000003557	ENSCSAVG00000003562	ENSCSAVG00000003567	ENSCSAVG00000003570	ENSCSAVG00000003576	ENSCSAVG00000003618	ENSCSAVG00000003623	ENSCSAVG00000003834	ENSCSAVG00000003839	ENSCSAVG00000003848	ENSCSAVG00000004892	ENSCSAVG00000005112	ENSCSAVG00000005125 #22	ENSCSAVG00000005340	ENSCSAVG00000005345	ENSCSAVG00000005348	ENSCSAVG00000005353	ENSCSAVG00000005356	ENSCSAVG00000005382	ENSCSAVG00000005386	ENSCSAVG00000005393	ENSCSAVG00000005414	ENSCSAVG00000005424	ENSCSAVG00000005504	ENSCSAVG00000005509	ENSCSAVG00000005531	ENSCSAVG00000005533	ENSCSAVG00000005699
Ciona	ANCESTRAL SPECIES																	ENSGT00950000182772.B.c.a.b #22
Ciona savignyi	MODERN SPECIES	97	ENSCSAVG00000007588	ENSCSAVG00000007598	ENSCSAVG00000007600	ENSCSAVG00000007605	ENSCSAVG00000007608	ENSCSAVG00000007611	ENSCSAVG00000007614	ENSCSAVG00000007617	ENSCSAVG00000007621	ENSCSAVG00000007622	ENSCSAVG00000007651	ENSCSAVG00000007657	ENSCSAVG00000007658	ENSCSAVG00000007661	ENSCSAVG00000007667	ENSCSAVG00000007695 #22	ENSCSAVG00000007890	ENSCSAVG00000007907	ENSCSAVG00000008126	ENSCSAVG00000008129
Ciona	ANCESTRAL SPECIES																	ENSGT00950000182772.B.c.b #22
Ciona intestinalis	DUPLICATION
Ciona intestinalis	MODERN SPECIES		ENSCING00000009106	ENSCING00000010135	ENSCING00000009108	not7 (ENSCING00000019922)	ENSCING00000009091	ENSCING00000009092	ENSCING00000009093	ENSCING00000022382	ENSCING00000001057	ENSCING00000009096	ENSCING00000009097	ENSCING00000009098	ENSCING00000009099	ENSCING00000020670	ENSCING00000009100	ENSCING00000009101 #22	ENSCING00000013766	ENSCING00000009088	ENSCING00000009089	ENSCING00000020166	ENSCING00000021467	ENSCING00000002824	ci-ndk/dm44 (ENSCING00000013757)	ENSCING00000010224	sfrp3/4-b (ENSCING00000013758)	ENSCING00000002835	ENSCING00000002821	ENSCING00000018947	ENSCING00000018534	ENSCING00000013754	ENSCING00000023059
Ciona intestinalis	MODERN SPECIES	13	ENSCING00000002204	ENSCING00000006693	ENSCING00000012837	ENSCING00000010647	ENSCING00000019099	ENSCING00000012841	ENSCING00000024826	ENSCING00000012842	ENSCING00000006690	ENSCING00000016330	ENSCING00000022253	ENSCING00000012843	ENSCING00000012844	ENSCING00000012845	ENSCING00000006687	ENSCING00000009873 #22	ENSCING00000006685	ENSCING00000012852	ENSCING00000023421	ENSCING00000019055	ENSCING00000006684	ENSCING00000006673	ENSCING00000019170	ENSCING00000006665	ENSCING00000024831	ENSCING00000017892	ENSCING00000006662	ENSCING00000006657	ENSCING00000018306	ENSCING00000006661	ENSCING00000023390
Ciona	ANCESTRAL SPECIES	288															ENSGT00940000155472	ENSGT00950000182772.B.d #22	ENSGT00390000018561	ENSGT00940000166626.a.a
Ciona savignyi	MODERN SPECIES	181	ENSCSAVG00000009617	ENSCSAVG00000009613	ENSCSAVG00000009612	ENSCSAVG00000009606	ENSCSAVG00000009600	ENSCSAVG00000009523	ENSCSAVG00000009449	ENSCSAVG00000009431	ENSCSAVG00000009414	ENSCSAVG00000009410	ENSCSAVG00000009409	ENSCSAVG00000009405	ENSCSAVG00000009218	ENSCSAVG00000009216	ENSCSAVG00000009193	ENSCSAVG00000009017 #22	ENSCSAVG00000009016	ENSCSAVG00000009014	ENSCSAVG00000009011	ENSCSAVG00000009007	ENSCSAVG00000008781	ENSCSAVG00000008773	ENSCSAVG00000008769	ENSCSAVG00000008761	ENSCSAVG00000008746	ENSCSAVG00000008738	ENSCSAVG00000008732	ENSCSAVG00000008724	ENSCSAVG00000008661	ENSCSAVG00000008547	ENSCSAVG00000008544
Ciona intestinalis	MODERN SPECIES		ENSCING00000022508	ENSCING00000013783	ENSCING00000004357	ENSCING00000017989	ENSCING00000001272	ENSCING00000001263	ENSCING00000004388	ENSCING00000004387	ENSCING00000017547	ENSCING00000001281	ENSCING00000023319	ENSCING00000005864	leprecan (ENSCING00000005866)	ENSCING00000004824	ENSCING00000004803	ENSCING00000004805 #22	ENSCING00000004822	ENSCING00000013790	ENSCING00000013789	ENSCING00000024714	ENSCING00000013792	ENSCING00000004800	ENSCING00000013796	ENSCING00000020146	ENSCING00000024859	ENSCING00000004775	ENSCING00000004794	ENSCING00000004795	ENSCING00000013795	ENSCING00000013794	ENSCING00000004797
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000182772.B #22
Fruitfly	MODERN SPECIES	17	Obp58b (FBgn0034768)	Obp58c (FBgn0034769)	Obp58d (FBgn0034770)	CG30275 (FBgn0050275)	CG30268 (FBgn0050268)	jbug (FBgn0028371)	CG42260 (FBgn0259145)	CG13526 (FBgn0034774)	CG13527 (FBgn0034776)	CG30270 (FBgn0061435)	blw (FBgn0011211)	CycB (FBgn0000405)	stl (FBgn0086408)	CG30271 (FBgn0050271)	CG42284 (FBgn0259179)	CG30274 (FBgn0050274) #22	MFS1 (FBgn0050272)	CG30265 (FBgn0050265)	CG12490 (FBgn0034782)	CG9825 (FBgn0034783)	CG9826 (FBgn0034784)	CG3649 (FBgn0034785)	CG13531 (FBgn0034786)	RpL23 (FBgn0010078)	inaD (FBgn0001263)	fd59A (FBgn0004896)	CG13532 (FBgn0034788)	PIP5K59B (FBgn0034789)	EMC8-9 (FBgn0034791)	YME1L (FBgn0034792)	asrij (FBgn0034793)
Bilateria	ANCESTRAL SPECIES																	ENSGT00950000182772.A ##22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000182772.A ##22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	13	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000265079	ENSGT00950000182772.A.a.a ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00390000001205.b	ENSGT00940000153887.A	ENSGT00940000157826
Elephant shark	MODERN SPECIES	2795																ckmb (ENSCMIG00000004868) ##22
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Salmoninae	ANCESTRAL SPECIES	348												ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000008610.a.b.b.b	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d	ENSGT00940000156536.e.a.h	ENSGT00390000009497.a.d	ENSGT00940000156648.c.a.b
Huchen	MODERN SPECIES	264	HSPA8 (ENSHHUG00000051052)	zpr1 (ENSHHUG00000051004)	h2ax1 (ENSHHUG00000050985)	hyou1 (ENSHHUG00000050786)	vps11 (ENSHHUG00000050754)	ift46 (ENSHHUG00000050741)	BBX (ENSHHUG00000050727)	B3GAT1 (ENSHHUG00000050725)	ENSHHUG00000050724	micu2 (ENSHHUG00000050712)	IRF2BP1 (ENSHHUG00000050711)	hnrnpl (ENSHHUG00000050668)	actb1 (ENSHHUG00000050662)	ENSHHUG00000050652	ENSHHUG00000050650 ##22	ckma (ENSHHUG00000050536) ##22	ENSHHUG00000050535	ENSHHUG00000050534	ENSHHUG00000050533	ENSHHUG00000050532	ENSHHUG00000050531	EXOC3L2 (ENSHHUG00000050530)	ppp1r14aa (ENSHHUG00000050529)	dlb (ENSHHUG00000050527)
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173784	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005036020	hspa8 (ENSOTSG00005036034)	ENSOTSG00005037924	ENSOTSG00005037932	zpr1 (ENSOTSG00005038245)	h2ax1 (ENSOTSG00005038442)	hyou1 (ENSOTSG00005038472)	vps11 (ENSOTSG00005044419)	ift46 (ENSOTSG00005044543)	BBX (ENSOTSG00005044735)	B3GAT1 (ENSOTSG00005044736)	micu2 (ENSOTSG00005044738)	IRF2BP1 (ENSOTSG00005044741)	hnrnpl (ENSOTSG00005044743)	ENSOTSG00005044875	ckma (ENSOTSG00005044876) ##22	MARK4 (ENSOTSG00005044877)	EXOC3L2 (ENSOTSG00005044878)	ppp1r14aa (ENSOTSG00005044879)	dlb (ENSOTSG00005044880)	ENSOTSG00005044881	alkbh6 (ENSOTSG00005044882)	nova1 (ENSOTSG00005044883)	ENSOTSG00005044884	crx (ENSOTSG00005044885)	ENSOTSG00005044886	plekhb1 (ENSOTSG00005044887)	fam168a (ENSOTSG00005044888)	FCHSD2 (ENSOTSG00005044891)	ENSOTSG00005044899	ENSOTSG00005044901
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005020026	hspa8 (ENSOTSG00005020062)	ENSOTSG00005022110	ENSOTSG00005022118	zpr1 (ENSOTSG00005022289)	h2ax1 (ENSOTSG00005022474)	hyou1 (ENSOTSG00005022487)	vps11 (ENSOTSG00005023954)	ift46 (ENSOTSG00005024951)	BBX (ENSOTSG00005025022)	B3GAT1 (ENSOTSG00005025024)	micu2 (ENSOTSG00005025034)	IRF2BP1 (ENSOTSG00005025036)	hnrnpl (ENSOTSG00005025038)	ENSOTSG00005025133	ckma (ENSOTSG00005025137) ##22	MARK4 (ENSOTSG00005001434)	EXOC3L2 (ENSOTSG00005001493)	ppp1r14aa (ENSOTSG00005001495)	dlb (ENSOTSG00005001497)	ENSOTSG00005001499	alkbh6 (ENSOTSG00005001500)	NOVA2 (ENSOTSG00005001501)	ENSOTSG00005001503	crx (ENSOTSG00005001504)	ENSOTSG00005001505	fam168a (ENSOTSG00005001507)	plekhb1 (ENSOTSG00005001508)	FCHSD2 (ENSOTSG00005001514)	ENSOTSG00005001704	ENSOTSG00005001718
Coho salmon	MODERN SPECIES	26	ENSOKIG00005001296	hspa8 (ENSOKIG00005001342)	ENSOKIG00005001368	ENSOKIG00005001385	zpr1 (ENSOKIG00005001443)	h2ax1 (ENSOKIG00005001462)	hyou1 (ENSOKIG00005001730)	vps11 (ENSOKIG00005003979)	ift46 (ENSOKIG00005004079)	BBX (ENSOKIG00005004121)	B3GAT1 (ENSOKIG00005004153)	micu2 (ENSOKIG00005004172)	IRF2BP1 (ENSOKIG00005004184)	HNRNPL (ENSOKIG00005004397)	ENSOKIG00005005166	ckma (ENSOKIG00005005200) ##22	ckma (ENSOKIG00005005219) ##22	MARK4 (ENSOKIG00005005256)	ENSOKIG00005005534	ppp1r14aa (ENSOKIG00005005564)	dlb (ENSOKIG00005005580)	ENSOKIG00005005601	alkbh6 (ENSOKIG00005005610)	nova1 (ENSOKIG00005005620)	ENSOKIG00005005637	ENSOKIG00005005642	ENSOKIG00005005649	ENSOKIG00005005660	ENSOKIG00005005687	FCHSD2 (ENSOKIG00005005718)	ENSOKIG00005005814
Rainbow trout	MODERN SPECIES	3	hspa8 (ENSOMYG00000041769)	ENSOMYG00000042143	ENSOMYG00000042221	zpr1 (ENSOMYG00000042375)	H2A (ENSOMYG00000057469)	hyou1 (ENSOMYG00000042674)	vps11 (ENSOMYG00000044861)	ift46 (ENSOMYG00000044897)	ENSOMYG00000044913	ENSOMYG00000044930	ENSOMYG00000044945	ENSOMYG00000044949	ENSOMYG00000044987	ENSOMYG00000049659	ENSOMYG00000045108	ckma (ENSOMYG00000045128) ##22	ENSOMYG00000045135 ##22	ENSOMYG00000045153	ENSOMYG00000045193	ppp1r14aa (ENSOMYG00000077245)	dlb (ENSOMYG00000064695)	ENSOMYG00000045205	ENSOMYG00000065368	ENSOMYG00000069295	alkbh6 (ENSOMYG00000003168)	nova1 (ENSOMYG00000003195)	ENSOMYG00000003312	ENSOMYG00000070407	ENSOMYG00000058244	ENSOMYG00000077580	ENSOMYG00000003495
Salmo	ANCESTRAL SPECIES	44	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00910000144115.b.dc.a.a	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a
Atlantic salmon	MODERN SPECIES	4	hspa8 (ENSSSAG00000049191)	ENSSSAG00000049121	ENSSSAG00000114214	ENSSSAG00000048739	zpr1 (ENSSSAG00000048701)	ENSSSAG00000107338	hyou1 (ENSSSAG00000041165)	ENSSSAG00000039166	ift46 (ENSSSAG00000032149)	ENSSSAG00000031513	ENSSSAG00000015502	ENSSSAG00000073142	ENSSSAG00000031369	ENSSSAG00000015815	SFRS7 (ENSSSAG00000015467)	ckm3 (ENSSSAG00000015360) ##22	ENSSSAG00000096877	ENSSSAG00000013065	ENSSSAG00000087356	ENSSSAG00000093155	ENSSSAG00000012320	ppp1r14aa (ENSSSAG00000089852)	dlb (ENSSSAG00000075986)	capns1a (ENSSSAG00000011852)	alkbh6 (ENSSSAG00000011720)	nova1 (ENSSSAG00000011478)	ENSSSAG00000122286	ENSSSAG00000102383	ENSSSAG00000011401	h3f3a (ENSSSAG00000011330)	ENSSSAG00000011266
River trout	MODERN SPECIES	6	ENSSTUG00000016607	hspa8 (ENSSTUG00000016553)	ENSSTUG00000016530	ENSSTUG00000016498	zpr1 (ENSSTUG00000016443)	h2ax1 (ENSSTUG00000016438)	hyou1 (ENSSTUG00000015801)	vps11 (ENSSTUG00000014949)	ift46 (ENSSTUG00000012267)	BBX (ENSSTUG00000012233)	B3GAT1 (ENSSTUG00000012188)	micu2 (ENSSTUG00000012176)	IRF2BP1 (ENSSTUG00000012172)	hnrnpl (ENSSTUG00000011908)	ENSSTUG00000011838	ckma (ENSSTUG00000011828) ##22	MARK4 (ENSSTUG00000011588)	EXOC3L2 (ENSSTUG00000011550)	ppp1r14aa (ENSSTUG00000011543)	dlb (ENSSTUG00000011524)	ENSSTUG00000011497	alkbh6 (ENSSTUG00000011492)	nova1 (ENSSTUG00000011443)	ENSSTUG00000011430	crx (ENSSTUG00000011422)	ENSSTUG00000011409	plekhb1 (ENSSTUG00000011405)	fam168a (ENSSTUG00000011347)	FCHSD2 (ENSSTUG00000011322)	ENSSTUG00000011270	ENSSTUG00000011254
Northern pike	MODERN SPECIES	6	ENSELUG00000016236	ENSELUG00000016261	zpr1 (ENSELUG00000016289)	h2ax1 (ENSELUG00000008621)	hyou1 (ENSELUG00000016398)	vps11 (ENSELUG00000016477)	ift46 (ENSELUG00000016513)	BBX (ENSELUG00000016555)	B3GAT1 (ENSELUG00000016581)	GLB1L2 (ENSELUG00000016624)	micu2 (ENSELUG00000016716)	IRF2BP1 (ENSELUG00000016642)	hnrnpl (ENSELUG00000016863)	srsf7a (ENSELUG00000016922)	slc8a2a (ENSELUG00000017003)	ckma (ENSELUG00000017033) ##22	ENSELUG00000031972	MARK4 (ENSELUG00000017104)	EXOC3L2 (ENSELUG00000017170)	ppp1r14aa (ENSELUG00000017185)	dlb (ENSELUG00000017222)	ENSELUG00000033905	ENSELUG00000017247	zgc:153990 (ENSELUG00000017267)	capns1a (ENSELUG00000017326)	alkbh6 (ENSELUG00000017352)	nova1 (ENSELUG00000017375)	kptn (ENSELUG00000017416)	crx (ENSELUG00000017439)	ENSELUG00000017446	ENSELUG00000025385
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Burton s mouthbrooder	MODERN SPECIES	1145																ENSHBUG00000001780 ##22	ENSHBUG00000001774	ENSHBUG00000001767
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES	44	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00910000144115.b.dc.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q	ENSGT00390000008610.a.b.b.a.a.b	ENSGT00530000064411.b.e
Salmo	ANCESTRAL SPECIES	17	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00940000173128.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00990000213120	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000087660	ENSSSAG00000099399	hyou1 (ENSSSAG00000070523)	vps11 (ENSSSAG00000073092)	ENSSSAG00000073124	ENSSSAG00000073126	ENSSSAG00000100012	ENSSSAG00000073134	ENSSSAG00000121731	i2bp1 (ENSSSAG00000073147)	ENSSSAG00000073158	hnrnpl (ENSSSAG00000099862)	slc8a2a (ENSSSAG00000073560)	nccrp1 (ENSSSAG00000075920)	ckma (ENSSSAG00000075928) ##22	ckm2 (ENSSSAG00000075922) ##22	ENSSSAG00000075935	ENSSSAG00000075971	ppp1r14aa (ENSSSAG00000086720)	dlb (ENSSSAG00000063795)	ENSSSAG00000075989	zgc:153990 (ENSSSAG00000108819)	ENSSSAG00000075994	nova1 (ENSSSAG00000076005)	ENSSSAG00000075999	ENSSSAG00000076024	ENSSSAG00000101243	h3f3a (ENSSSAG00000076232)	fam168a (ENSSSAG00000000571)	ENSSSAG00000107897	ENSSSAG00000000620
River trout	MODERN SPECIES	10	ENSSTUG00000005989	ENSSTUG00000005978	hyou1 (ENSSTUG00000003329)	vps11 (ENSSTUG00000003095)	BBX (ENSSTUG00000003061)	B3GAT1 (ENSSTUG00000003010)	ENSSTUG00000002887	micu2 (ENSSTUG00000002846)	IRF2BP1 (ENSSTUG00000002841)	ENSSTUG00000002718	hnrnpl (ENSSTUG00000002311)	ENSSTUG00000002265	slc8a2a (ENSSTUG00000002168)	nccrp1 (ENSSTUG00000002140)	ckma (ENSSTUG00000046932) ##22	ckma (ENSSTUG00000046897) ##22	MARK4 (ENSSTUG00000046778)	EXOC3L2 (ENSSTUG00000046759)	ppp1r14aa (ENSSTUG00000046753)	dlb (ENSSTUG00000046740)	ENSSTUG00000046731	ENSSTUG00000046727	zgc:153990 (ENSSTUG00000046722)	CAPNS1 (ENSSTUG00000046718)	ENSSTUG00000046696	nova1 (ENSSTUG00000046672)	kptn (ENSSTUG00000046541)	crx (ENSSTUG00000046524)	ENSSTUG00000046520	plekhb1 (ENSSTUG00000046511)	fam168a (ENSSTUG00000046495)
Oncorhynchus	ANCESTRAL SPECIES	41	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e.a	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00910000144115.b.dc.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT00940000159555.v.b.d.b	ENSGT01030000234613.b.b.h.a	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q	ENSGT00390000008610.a.b.b.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	43	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e.a	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00910000144115.b.dc.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q	ENSGT00390000008610.a.b.b.a.a.b	ENSGT00530000064411.b.e
Coho salmon	MODERN SPECIES	20	ENSOKIG00005040492	zpr1 (ENSOKIG00005040900)	ENSOKIG00005041254	hyou1 (ENSOKIG00005041683)	vps11 (ENSOKIG00005045947)	BBX (ENSOKIG00005045957)	B3GAT1 (ENSOKIG00005045964)	ENSOKIG00005046029	MICU2 (ENSOKIG00005046081)	IRF2BP1 (ENSOKIG00005046088)	ENSOKIG00005046095	hnrnpl (ENSOKIG00005046194)	ENSOKIG00005046863	slc8a2a (ENSOKIG00005046872)	nccrp1 (ENSOKIG00005046918)	ckma (ENSOKIG00005046933) ##22	ENSOKIG00005046943	EXOC3L2 (ENSOKIG00005046973)	ENSOKIG00005046979	ppp1r14aa (ENSOKIG00005046985)	dlb (ENSOKIG00005047008)	ENSOKIG00005047015	ENSOKIG00005047019	zgc:153990 (ENSOKIG00005047028)	ENSOKIG00005047032	nova1 (ENSOKIG00005047065)	crx (ENSOKIG00005047252)	ENSOKIG00005047257	plekhb1 (ENSOKIG00005047266)	ENSOKIG00005047283	FCHSD2 (ENSOKIG00005047308)
Salmoninae	ANCESTRAL SPECIES	348											ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000008610.a.b.b.b	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d	ENSGT00940000156536.e.a.h	ENSGT00390000009497.a.d	ENSGT00940000156648.c.a.b	ENSGT00390000015655.a.m.b
Huchen	MODERN SPECIES	264	ENSHHUG00000051054	HSPA8 (ENSHHUG00000051052)	zpr1 (ENSHHUG00000051004)	h2ax1 (ENSHHUG00000050985)	hyou1 (ENSHHUG00000050786)	vps11 (ENSHHUG00000050754)	ift46 (ENSHHUG00000050741)	BBX (ENSHHUG00000050727)	B3GAT1 (ENSHHUG00000050725)	ENSHHUG00000050724	micu2 (ENSHHUG00000050712)	IRF2BP1 (ENSHHUG00000050711)	hnrnpl (ENSHHUG00000050668)	actb1 (ENSHHUG00000050662)	ENSHHUG00000050652	ENSHHUG00000050650 ##22	ckma (ENSHHUG00000050536) ##22	ENSHHUG00000050535	ENSHHUG00000050534	ENSHHUG00000050533	ENSHHUG00000050532	ENSHHUG00000050531	EXOC3L2 (ENSHHUG00000050530)	ppp1r14aa (ENSHHUG00000050529)	dlb (ENSHHUG00000050527)
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d	ENSGT00940000156536.e.a.h
Salmo	ANCESTRAL SPECIES	17	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00940000173128.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00990000213120	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a
River trout	MODERN SPECIES	10	zpr1 (ENSSTUG00000006026)	ENSSTUG00000005989	ENSSTUG00000005978	hyou1 (ENSSTUG00000003329)	vps11 (ENSSTUG00000003095)	BBX (ENSSTUG00000003061)	B3GAT1 (ENSSTUG00000003010)	ENSSTUG00000002887	micu2 (ENSSTUG00000002846)	IRF2BP1 (ENSSTUG00000002841)	ENSSTUG00000002718	hnrnpl (ENSSTUG00000002311)	ENSSTUG00000002265	slc8a2a (ENSSTUG00000002168)	nccrp1 (ENSSTUG00000002140)	ckma (ENSSTUG00000046932) ##22	ckma (ENSSTUG00000046897) ##22	MARK4 (ENSSTUG00000046778)	EXOC3L2 (ENSSTUG00000046759)	ppp1r14aa (ENSSTUG00000046753)	dlb (ENSSTUG00000046740)	ENSSTUG00000046731	ENSSTUG00000046727	zgc:153990 (ENSSTUG00000046722)	CAPNS1 (ENSSTUG00000046718)	ENSSTUG00000046696	nova1 (ENSSTUG00000046672)	kptn (ENSSTUG00000046541)	crx (ENSSTUG00000046524)	ENSSTUG00000046520	plekhb1 (ENSSTUG00000046511)
Atlantic salmon	MODERN SPECIES	23	h2ax1 (ENSSSAG00000114519)	ENSSSAG00000087660	ENSSSAG00000099399	hyou1 (ENSSSAG00000070523)	vps11 (ENSSSAG00000073092)	ENSSSAG00000073124	ENSSSAG00000073126	ENSSSAG00000100012	ENSSSAG00000073134	ENSSSAG00000121731	i2bp1 (ENSSSAG00000073147)	ENSSSAG00000073158	hnrnpl (ENSSSAG00000099862)	slc8a2a (ENSSSAG00000073560)	nccrp1 (ENSSSAG00000075920)	ckma (ENSSSAG00000075928) ##22	ckm2 (ENSSSAG00000075922) ##22	ENSSSAG00000075935	ENSSSAG00000075971	ppp1r14aa (ENSSSAG00000086720)	dlb (ENSSSAG00000063795)	ENSSSAG00000075989	zgc:153990 (ENSSSAG00000108819)	ENSSSAG00000075994	nova1 (ENSSSAG00000076005)	ENSSSAG00000075999	ENSSSAG00000076024	ENSSSAG00000101243	h3f3a (ENSSSAG00000076232)	fam168a (ENSSSAG00000000571)	ENSSSAG00000107897
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.a ##22
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000009522	ENSOMYG00000009473	ENSOMYG00000009397	ENSOMYG00000009310	ENSOMYG00000009258	hnrnpl (ENSOMYG00000009052)	ENSOMYG00000008873	slc8a2a (ENSOMYG00000008190)	nccrp1 (ENSOMYG00000007311)	ENSOMYG00000052806	ckma (ENSOMYG00000066323) ##22	ENSOMYG00000007181	ENSOMYG00000007158	ppp1r14aa (ENSOMYG00000061359)	ENSOMYG00000006984	CKM (ENSOMYG00000007272) ##22	dlb (ENSOMYG00000006961)	ENSOMYG00000006924	zgc:153990 (ENSOMYG00000006899)	ENSOMYG00000006889	nova1 (ENSOMYG00000006831)	ENSOMYG00000006535	ENSOMYG00000006507	ENSOMYG00000006490	ENSOMYG00000006448	ENSOMYG00000006287	ENSOMYG00000060501	ENSOMYG00000006097	ENSOMYG00000005978	ENSOMYG00000005939	ENSOMYG00000005887
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.a ##22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	23	ENSOTSG00005040780	hyou1 (ENSOTSG00005040396)	vps11 (ENSOTSG00005040377)	vps11 (ENSOTSG00005040376)	BBX (ENSOTSG00005040373)	B3GAT1 (ENSOTSG00005040363)	ENSOTSG00005040345	micu2 (ENSOTSG00005040339)	IRF2BP1 (ENSOTSG00005040337)	ENSOTSG00005040325	hnrnpl (ENSOTSG00005039066)	ENSOTSG00005039044	slc8a2a (ENSOTSG00005038675)	nccrp1 (ENSOTSG00005038665)	ckma (ENSOTSG00005038663) ##22	ckma (ENSOTSG00005038662) ##22	ENSOTSG00005038660	MARK4 (ENSOTSG00005038659)	ENSOTSG00005038657	EXOC3L2 (ENSOTSG00005038655)	ppp1r14aa (ENSOTSG00005038653)	dlb (ENSOTSG00005038647)	ENSOTSG00005038643	zgc:153990 (ENSOTSG00005038641)	ENSOTSG00005038639	nova1 (ENSOTSG00005038637)	crx (ENSOTSG00005038635)	kptn (ENSOTSG00005038591)	ENSOTSG00005038582	plekhb1 (ENSOTSG00005038581)	fam168a (ENSOTSG00005038579)
Chinook salmon	MODERN SPECIES	23	ENSOTSG00005040781	ENSOTSG00005040780	hyou1 (ENSOTSG00005040396)	vps11 (ENSOTSG00005040377)	vps11 (ENSOTSG00005040376)	BBX (ENSOTSG00005040373)	B3GAT1 (ENSOTSG00005040363)	ENSOTSG00005040345	micu2 (ENSOTSG00005040339)	IRF2BP1 (ENSOTSG00005040337)	ENSOTSG00005040325	hnrnpl (ENSOTSG00005039066)	ENSOTSG00005039044	slc8a2a (ENSOTSG00005038675)	nccrp1 (ENSOTSG00005038665)	ckma (ENSOTSG00005038663) ##22	ckma (ENSOTSG00005038662) ##22	ENSOTSG00005038660	MARK4 (ENSOTSG00005038659)	ENSOTSG00005038657	EXOC3L2 (ENSOTSG00005038655)	ppp1r14aa (ENSOTSG00005038653)	dlb (ENSOTSG00005038647)	ENSOTSG00005038643	zgc:153990 (ENSOTSG00005038641)	ENSOTSG00005038639	nova1 (ENSOTSG00005038637)	crx (ENSOTSG00005038635)	kptn (ENSOTSG00005038591)	ENSOTSG00005038582	plekhb1 (ENSOTSG00005038581)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000042143	ENSOMYG00000042221	zpr1 (ENSOMYG00000042375)	H2A (ENSOMYG00000057469)	hyou1 (ENSOMYG00000042674)	vps11 (ENSOMYG00000044861)	ift46 (ENSOMYG00000044897)	ENSOMYG00000044913	ENSOMYG00000044930	ENSOMYG00000044945	ENSOMYG00000044949	ENSOMYG00000044987	ENSOMYG00000049659	ENSOMYG00000045108	ckma (ENSOMYG00000045128) ##22	ENSOMYG00000045135 ##22	ENSOMYG00000045153	ENSOMYG00000045193	ppp1r14aa (ENSOMYG00000077245)	dlb (ENSOMYG00000064695)	ENSOMYG00000045205	ENSOMYG00000065368	ENSOMYG00000069295	alkbh6 (ENSOMYG00000003168)	nova1 (ENSOMYG00000003195)	ENSOMYG00000003312	ENSOMYG00000070407	ENSOMYG00000058244	ENSOMYG00000077580	ENSOMYG00000003495	ENSOMYG00000003572
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173784	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f
Coho salmon	MODERN SPECIES	26	hspa8 (ENSOKIG00005001342)	ENSOKIG00005001368	ENSOKIG00005001385	zpr1 (ENSOKIG00005001443)	h2ax1 (ENSOKIG00005001462)	hyou1 (ENSOKIG00005001730)	vps11 (ENSOKIG00005003979)	ift46 (ENSOKIG00005004079)	BBX (ENSOKIG00005004121)	B3GAT1 (ENSOKIG00005004153)	micu2 (ENSOKIG00005004172)	IRF2BP1 (ENSOKIG00005004184)	HNRNPL (ENSOKIG00005004397)	ENSOKIG00005005166	ckma (ENSOKIG00005005200) ##22	ckma (ENSOKIG00005005219) ##22	MARK4 (ENSOKIG00005005256)	ENSOKIG00005005534	ppp1r14aa (ENSOKIG00005005564)	dlb (ENSOKIG00005005580)	ENSOKIG00005005601	alkbh6 (ENSOKIG00005005610)	nova1 (ENSOKIG00005005620)	ENSOKIG00005005637	ENSOKIG00005005642	ENSOKIG00005005649	ENSOKIG00005005660	ENSOKIG00005005687	FCHSD2 (ENSOKIG00005005718)	ENSOKIG00005005814	ENSOKIG00005005853
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.b ##22
Rainbow trout	MODERN SPECIES	1	hyou1 (ENSOMYG00000010478)	vps11 (ENSOMYG00000009570)	ENSOMYG00000075603	vps11 (ENSOMYG00000009555)	ENSOMYG00000014549	ENSOMYG00000009522	ENSOMYG00000009473	ENSOMYG00000009397	ENSOMYG00000009310	ENSOMYG00000009258	hnrnpl (ENSOMYG00000009052)	ENSOMYG00000008873	slc8a2a (ENSOMYG00000008190)	nccrp1 (ENSOMYG00000007311)	ENSOMYG00000052806	ckma (ENSOMYG00000066323) ##22	ENSOMYG00000007181	ENSOMYG00000007158	ppp1r14aa (ENSOMYG00000061359)	ENSOMYG00000006984	CKM (ENSOMYG00000007272) ##22	dlb (ENSOMYG00000006961)	ENSOMYG00000006924	zgc:153990 (ENSOMYG00000006899)	ENSOMYG00000006889	nova1 (ENSOMYG00000006831)	ENSOMYG00000006535	ENSOMYG00000006507	ENSOMYG00000006490	ENSOMYG00000006448	ENSOMYG00000006287
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Huchen	MODERN SPECIES	144	ENSHHUG00000029666	hyou1 (ENSHHUG00000029692)	vps11 (ENSHHUG00000030067)	BBX (ENSHHUG00000030256)	ENSHHUG00000030258	B3GAT1 (ENSHHUG00000030271)	ENSHHUG00000030291	micu2 (ENSHHUG00000030316)	IRF2BP1 (ENSHHUG00000030328)	ENSHHUG00000030331	hnrnpl (ENSHHUG00000030362)	ENSHHUG00000030415	slc8a2a (ENSHHUG00000030442)	nccrp1 (ENSHHUG00000030948)	ENSHHUG00000030956	ckma (ENSHHUG00000030958) ##22	atat1 (ENSHHUG00000031051)	tnfa (ENSHHUG00000031062)	ENSHHUG00000031075	ENSHHUG00000031080
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Chinook salmon	MODERN SPECIES	3	TUBB3 (ENSOTSG00005017643)	mc1r (ENSOTSG00005017642)	tcf25 (ENSOTSG00005017640)	cyba (ENSOTSG00005017638)	mvda (ENSOTSG00005017636)	pdcd5 (ENSOTSG00005017627)	ENSOTSG00005017625	ENSOTSG00005017624	ENSOTSG00005017622	ENSOTSG00005017619	ENSOTSG00005017617	kif7 (ENSOTSG00005017614)	RHCG (ENSOTSG00005017521)	fes (ENSOTSG00005016874)	furina (ENSOTSG00005016838)	ENSOTSG00005016837 ##22	ENSOTSG00005016836	E2F4 (ENSOTSG00005016835)	si:ch211-122f10.4 (ENSOTSG00005016832)	slc38a7 (ENSOTSG00005016827)	got2b (ENSOTSG00005016821)	calb2b (ENSOTSG00005016818)	ENSOTSG00005016816	cmtr2 (ENSOTSG00005016815)	ENSOTSG00005016814	dnaaf1 (ENSOTSG00005016813)	nrn1lb (ENSOTSG00005016811)	thap11 (ENSOTSG00005016810)	ENSOTSG00005016809	ENSOTSG00005016808	vrk3 (ENSOTSG00005016806)
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Aves	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Duck	MODERN SPECIES	1336																ENSAPLG00000016738 ##22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Zebra finch	MODERN SPECIES	80	ENSTGUG00000025223	ENSTGUG00000027729	ENSTGUG00000024195	ENSTGUG00000026453	ENSTGUG00000021279	ENSTGUG00000025049	ENSTGUG00000025743	CLASRP (ENSTGUG00000026126)	ENSTGUG00000029551	ENSTGUG00000024482	ENSTGUG00000022148	ERCC1 (ENSTGUG00000026421)	PPP1R13L (ENSTGUG00000029072)	SNRPD2 (ENSTGUG00000028090)	ERCC2 (ENSTGUG00000027406)	ENSTGUG00000023358 ##22	ENSTGUG00000025702	ENSTGUG00000020226	ENSTGUG00000020046	ENSTGUG00000026683	ENSTGUG00000020277	ENSTGUG00000024292	ENSTGUG00000021349	ENSTGUG00000018937	ENSTGUG00000028466	ENSTGUG00000028966	ENSTGUG00000028329	ENSTGUG00000028993	ENSTGUG00000028831	ENSTGUG00000019200	ENSTGUG00000025753
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Protacanthopterygii	ANCESTRAL SPECIES	7	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.a.b ##22	ENSGT00940000164942.b	ENSGT00940000153594.d	ENSGT00390000002172.A.a.f	ENSGT00940000156831	ENSGT00940000161226.a	ENSGT00940000160511.b	ENSGT00940000155481	ENSGT00940000160889	ENSGT00940000154035.a	ENSGT00940000158201	ENSGT00940000161449	ENSGT00390000001015.d	ENSGT00940000156517	ENSGT00940000158872	ENSGT00510000048154
Salmoninae	ANCESTRAL SPECIES	75	ENSGT00940000155548.sb.a.a.a	ENSGT00940000155548.sb.a.b	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT00940000162179.e.a.a.j.b	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253	ENSGT00940000158201.f	ENSGT00940000158052.a.h
Huchen	DUPLICATION
Huchen	MODERN SPECIES	502	eif3k (ENSHHUG00000002842)	ENSHHUG00000003194	DMWD (ENSHHUG00000003212)	hif1al (ENSHHUG00000003221)	ENSHHUG00000003268	ENSHHUG00000003281	ENSHHUG00000003285	ccdc9 (ENSHHUG00000003294)	bbc3 (ENSHHUG00000003301)	sae1 (ENSHHUG00000003305)	ENSHHUG00000003343	ZC3H4 (ENSHHUG00000003349)	zgc:154093 (ENSHHUG00000003401)	ercc2 (ENSHHUG00000003409)	klc3 (ENSHHUG00000003997)	ckma (ENSHHUG00000004071) ##22	MARK4 (ENSHHUG00000004176)	ENSHHUG00000004201	ENSHHUG00000004206	ENSHHUG00000004276	hip1 (ENSHHUG00000004301)	bcl7bb (ENSHHUG00000004332)	baz1b (ENSHHUG00000004346)	fzd9b (ENSHHUG00000004723)	grk7b (ENSHHUG00000004727)	rnf7 (ENSHHUG00000004729)	ENSHHUG00000004751
Huchen	MODERN SPECIES	261	eif3k (ENSHHUG00000046571)	ENSHHUG00000046514	DMWD (ENSHHUG00000046513)	hif1al (ENSHHUG00000046435)	zgc:152863 (ENSHHUG00000046426)	ENSHHUG00000046424	pak4 (ENSHHUG00000046410)	ENSHHUG00000046405	ccdc9 (ENSHHUG00000046380)	sae1 (ENSHHUG00000046363)	ENSHHUG00000046359	ENSHHUG00000046344	zgc:154093 (ENSHHUG00000046338)	ercc2 (ENSHHUG00000046317)	klc3 (ENSHHUG00000046178)	CKM (ENSHHUG00000046119) ##22	MARK4 (ENSHHUG00000046081)	ENSHHUG00000046078	ENSHHUG00000046021	ENSHHUG00000046013	hip1 (ENSHHUG00000045943)	bcl7bb (ENSHHUG00000045927)	baz1b (ENSHHUG00000045889)	fzd9b (ENSHHUG00000045885)	grk7b (ENSHHUG00000045884)	rnf7 (ENSHHUG00000045860)	ENSHHUG00000045827	ENSHHUG00000045814	RASA2 (ENSHHUG00000045797)	ENSHHUG00000045790	fbxo36a (ENSHHUG00000045784)
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00950000182970.C.i	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000164427.a.a.h.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.c.b	ENSGT00970000196788.J.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00940000161449	ENSGT00390000001015.d.a	ENSGT00940000156517.s
Salmo	ANCESTRAL SPECIES	22	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00950000182970.C.i	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000164427.a.a.h.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.c.b	ENSGT00390000002172.A.a.f.d.b	ENSGT00970000196788.J.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00390000001015.d.a	ENSGT00940000156517.s
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000113410	ENSSSAG00000064454	ENSSSAG00000064553	ENSSSAG00000106601	ENSSSAG00000064581	ENSSSAG00000064677	ENSSSAG00000064684	CCDC9 (ENSSSAG00000064699)	bbc3 (ENSSSAG00000064715)	sae1 (ENSSSAG00000064722)	ZC3H4 (ENSSSAG00000064752)	zgc:154093 (ENSSSAG00000094011)	ercc2 (ENSSSAG00000064774)	klc3 (ENSSSAG00000064802)	ENSSSAG00000116459	CKM (ENSSSAG00000065166) ##22	ENSSSAG00000065242	ENSSSAG00000058128	ENSSSAG00000058132	ENSSSAG00000085210	ENSSSAG00000113600	ENSSSAG00000066445	bcl7bb (ENSSSAG00000066889)	ENSSSAG00000066896	baz1b (ENSSSAG00000066946)	fzd9b (ENSSSAG00000068230)	grk7b (ENSSSAG00000118238)	fa70b (ENSSSAG00000068235)	rnf7 (ENSSSAG00000068233)	ENSSSAG00000068244	RASA2 (ENSSSAG00000068267)
River trout	MODERN SPECIES	4	zgc:85932 (ENSSTUG00000039404)	eif3k (ENSSTUG00000039423)	ENSSTUG00000039449	DMWD (ENSSTUG00000039460)	hif1al (ENSSTUG00000039467)	zgc:152863 (ENSSTUG00000039713)	ENSSTUG00000039724	ccdc9 (ENSSTUG00000039733)	ENSSTUG00000039755	bbc3 (ENSSTUG00000039759)	sae1 (ENSSTUG00000039766)	ENSSTUG00000039795	zgc:154093 (ENSSTUG00000039808)	ercc2 (ENSSTUG00000039822)	klc3 (ENSSTUG00000040074)	CKM (ENSSTUG00000040094) ##22	MARK4 (ENSSTUG00000040117)	ENSSTUG00000040343	ENSSTUG00000040348	ENSSTUG00000040351	ENSSTUG00000040357	hip1 (ENSSTUG00000040385)	bcl7bb (ENSSTUG00000040731)	ENSSTUG00000040755	baz1b (ENSSTUG00000040802)	fzd9b (ENSSTUG00000041376)	grk7b (ENSSTUG00000041421)	rnf7 (ENSSTUG00000041612)	ENSSTUG00000041629	ENSSTUG00000041665	RASA2 (ENSSTUG00000041787)
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00950000182970.C.i	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000164427.a.a.h.a	ENSGT01100000263533.b.b.a.a.b.d	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.d.b	ENSGT00970000196788.J.b	ENSGT00390000002172.A.a.f.c.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00940000161449	ENSGT00390000001015.d.a
Oncorhynchus_a	ANCESTRAL SPECIES	41	ENSGT00940000158344.a.a.c	ENSGT00940000155548.sb.a.a.b	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.d.b	ENSGT00970000196788.J.b	ENSGT00390000002172.A.a.f.c.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00940000161449	ENSGT00390000001015.d.a	ENSGT00940000156517.s	ENSGT00940000158872.c
Chinook salmon	MODERN SPECIES	5	actn4 (ENSOTSG00005003869)	zgc:85932 (ENSOTSG00005011549)	eif3k (ENSOTSG00005011550)	MAP4K1 (ENSOTSG00005011864)	ENSOTSG00005011866	DMWD (ENSOTSG00005011867)	hif1al (ENSOTSG00005011869)	zgc:152863 (ENSOTSG00005011870)	ENSOTSG00005011872	ccdc9 (ENSOTSG00005011875)	bbc3 (ENSOTSG00005011877)	sae1 (ENSOTSG00005011879)	ZC3H4 (ENSOTSG00005011883)	zgc:154093 (ENSOTSG00005011885)	klc3 (ENSOTSG00005011887)	ENSOTSG00005011888 ##22	ENSOTSG00005011890	ENSOTSG00005011891	ENSOTSG00005011892	ENSOTSG00005011893	ENSOTSG00005011894	hip1 (ENSOTSG00005011910)	bcl7bb (ENSOTSG00005011974)	ENSOTSG00005011975	baz1b (ENSOTSG00005011976)	ENSOTSG00005012091	fzd9b (ENSOTSG00005012093)	grk7b (ENSOTSG00005012094)	rnf7 (ENSOTSG00005012102)	ENSOTSG00005012105	ENSOTSG00005012106
Rainbow trout	MODERN SPECIES	16	ENSOMYG00000035680	ENSOMYG00000055860	ENSOMYG00000035927	ENSOMYG00000037144	ENSOMYG00000037156	if3c (ENSOMYG00000037187)	ENSOMYG00000037394	ENSOMYG00000037582	ENSOMYG00000037599	ENSOMYG00000037614	bbc3 (ENSOMYG00000037622)	sae1 (ENSOMYG00000037649)	zgc:154093 (ENSOMYG00000037679)	ercc2 (ENSOMYG00000037685)	klc3 (ENSOMYG00000037717)	CKM (ENSOMYG00000037749) ##22	ENSOMYG00000037895	ENSOMYG00000037957	ENSOMYG00000073656	ENSOMYG00000037961	ENSOMYG00000046044	ENSOMYG00000038283	bcl7bb (ENSOMYG00000040277)	ENSOMYG00000040292	baz1b (ENSOMYG00000040339)	fzd9b (ENSOMYG00000040357)	grk7b (ENSOMYG00000028440)	rnf7 (ENSOMYG00000028447)	ENSOMYG00000028476	ENSOMYG00000067579	shbgb (ENSOMYG00000028548)
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT00940000162179.e.a.a.j.b	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT01100000263533.b.b.a.a.b.c	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253	ENSGT00940000158201.f
Oncorhynchus_a	ANCESTRAL SPECIES	25	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000158656.b.a.b	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT01100000263533.b.b.a.a.b.c	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253	ENSGT00940000158201.f
Coho salmon	MODERN SPECIES	6	ENSOKIG00005036011	ENSOKIG00005037148	ENSOKIG00005037172	DMWD (ENSOKIG00005037220)	ENSOKIG00005037249	ENSOKIG00005037411	ENSOKIG00005037426	CCDC9 (ENSOKIG00005037468)	bbc3 (ENSOKIG00005037498)	sae1 (ENSOKIG00005037521)	ZC3H4 (ENSOKIG00005037718)	ENSOKIG00005037794	zgc:154093 (ENSOKIG00005037796)	ercc2 (ENSOKIG00005037829)	klc3 (ENSOKIG00005037922)	CKM (ENSOKIG00005037939) ##22	MARK4 (ENSOKIG00005038036)	ENSOKIG00005038443	ENSOKIG00005038458	ENSOKIG00005038531	bcl7bb (ENSOKIG00005039219)	ENSOKIG00005039257	baz1b (ENSOKIG00005039312)	fzd9b (ENSOKIG00005039502)	grk7b (ENSOKIG00005039516)	rnf7 (ENSOKIG00005039522)	ENSOKIG00005039554	RASA2 (ENSOKIG00005039755)	ENSOKIG00005042041	trip12 (ENSOKIG00005042635)	dner (ENSOKIG00005046503)
Chinook salmon	MODERN SPECIES	4	slc8a2b (ENSOTSG00005005664)	ENSOTSG00005005707	actn4 (ENSOTSG00005005711)	eif3k (ENSOTSG00005005966)	ENSOTSG00005005980	DMWD (ENSOTSG00005005984)	hif1al (ENSOTSG00005005987)	zgc:152863 (ENSOTSG00005005990)	ENSOTSG00005005991	ccdc9 (ENSOTSG00005005992)	sae1 (ENSOTSG00005005993)	ZC3H4 (ENSOTSG00005005994)	zgc:154093 (ENSOTSG00005005995)	ercc2 (ENSOTSG00005005998)	klc3 (ENSOTSG00005006002)	CKM (ENSOTSG00005006004) ##22	MARK4 (ENSOTSG00005006022)	ENSOTSG00005006083	ENSOTSG00005006084	ENSOTSG00005006085	hip1 (ENSOTSG00005006093)	bcl7bb (ENSOTSG00005006926)	baz1b (ENSOTSG00005006929)	fzd9b (ENSOTSG00005006931)	grk7b (ENSOTSG00005006934)	rnf7 (ENSOTSG00005006935)	ENSOTSG00005006936	ENSOTSG00005006937	RASA2 (ENSOTSG00005006939)	ENSOTSG00005007116	ENSOTSG00005007117
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000039435	ENSOMYG00000039821	ENSOMYG00000039324	hif1al (ENSOMYG00000040205)	ENSOMYG00000050721	ENSOMYG00000063813	pak4 (ENSOMYG00000040226)	CCDC9 (ENSOMYG00000040254)	bbc3 (ENSOMYG00000072270)	sae1 (ENSOMYG00000040271)	ENSOMYG00000067123	ZC3H4 (ENSOMYG00000040298)	zgc:154093 (ENSOMYG00000040315)	ercc2 (ENSOMYG00000040371)	klc3 (ENSOMYG00000040406)	CKM (ENSOMYG00000040438) ##22	ENSOMYG00000040566	ENSOMYG00000041299	ENSOMYG00000070121	ENSOMYG00000068221	ENSOMYG00000041042	ENSOMYG00000041050	ENSOMYG00000041135	bcl7bb (ENSOMYG00000041238)	baz1b (ENSOMYG00000041275)	grk7b (ENSOMYG00000041300)	ENSOMYG00000071384	rnf7 (ENSOMYG00000041304)	ENSOMYG00000041311	RASA2 (ENSOMYG00000041372)	fbxo36a (ENSOMYG00000041559)
Salmo	ANCESTRAL SPECIES	7	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT00940000162179.e.a.a.j.b	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.c.a	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT00940000158201.f
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000109272	ENSSSAG00000094654	actn4 (ENSSSAG00000056108)	ENSSSAG00000057129	ENSSSAG00000057098	ENSSSAG00000110379	hif1a (ENSSSAG00000057212)	ENSSSAG00000103318	CCDC9 (ENSSSAG00000057362)	bbc3 (ENSSSAG00000057379)	sae1 (ENSSSAG00000057386)	ZC3H4 (ENSSSAG00000057401)	zgc:154093 (ENSSSAG00000057416)	ercc2 (ENSSSAG00000057436)	klc3 (ENSSSAG00000057611)	CKM (ENSSSAG00000057721) ##22	ENSSSAG00000057731	ENSSSAG00000057766	ENSSSAG00000099530	ENSSSAG00000089564	ENSSSAG00000088515	ENSSSAG00000058306	bcl7bb (ENSSSAG00000109239)	ENSSSAG00000089532	ENSSSAG00000063459	baz1b (ENSSSAG00000063528)	fzd9b (ENSSSAG00000065556)	grk7b (ENSSSAG00000065566)	rnf7 (ENSSSAG00000065691)	ENSSSAG00000065700	ENSSSAG00000065714
River trout	MODERN SPECIES	18	ENSSTUG00000019263	actn4 (ENSSTUG00000019334)	eif3k (ENSSTUG00000020428)	ENSSTUG00000020526	DMWD (ENSSTUG00000020745)	hif1al (ENSSTUG00000020772)	zgc:152863 (ENSSTUG00000021322)	pak4 (ENSSTUG00000021331)	ccdc9 (ENSSTUG00000021348)	bbc3 (ENSSTUG00000021380)	sae1 (ENSSTUG00000021386)	ZC3H4 (ENSSTUG00000021427)	zgc:154093 (ENSSTUG00000021434)	ercc2 (ENSSTUG00000021440)	klc3 (ENSSTUG00000021503)	CKM (ENSSTUG00000021522) ##22	ENSSTUG00000021530	MARK4 (ENSSTUG00000021550)	ENSSTUG00000021766	ENSSTUG00000021781	ENSSTUG00000021793	hip1 (ENSSTUG00000021828)	bcl7bb (ENSSTUG00000022053)	ENSSTUG00000022072	baz1b (ENSSTUG00000022106)	fzd9b (ENSSTUG00000022387)	grk7b (ENSSTUG00000022411)	rnf7 (ENSSTUG00000022459)	ENSSTUG00000022463	RASA2 (ENSSTUG00000022522)	ENSSTUG00000024301
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b.d ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b.d ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b.d ##22
Coho salmon	MODERN SPECIES	9	eif3k (ENSOKIG00005017257)	ENSOKIG00005017217	ENSOKIG00005017196	DMWD (ENSOKIG00005017189)	hif1al (ENSOKIG00005016891)	zgc:152863 (ENSOKIG00005016841)	ENSOKIG00005016819	ENSOKIG00005016808	ENSOKIG00005016803	ccdc9 (ENSOKIG00005016780)	bbc3 (ENSOKIG00005016768)	sae1 (ENSOKIG00005016752)	ZC3H4 (ENSOKIG00005016744)	zgc:154093 (ENSOKIG00005016740)	klc3 (ENSOKIG00005013161)	ENSOKIG00005013121 ##22	MARK4 (ENSOKIG00005012854)	ENSOKIG00005012786	ENSOKIG00005012735	ENSOKIG00005012706	hip1 (ENSOKIG00005009611)	bcl7bb (ENSOKIG00005009360)	baz1b (ENSOKIG00005009152)	fzd9b (ENSOKIG00005009102)	grk7b (ENSOKIG00005009056)	rnf7 (ENSOKIG00005009038)	ENSOKIG00005008978	ENSOKIG00005008947	RASA2 (ENSOKIG00005008315)	ENSOKIG00005008193	fbxo36a (ENSOKIG00005008181)
Northern pike	MODERN SPECIES		zgc:85932 (ENSELUG00000017629)	ENSELUG00000017636	eif3k (ENSELUG00000017660)	MAP4K1 (ENSELUG00000017720)	DMWD (ENSELUG00000017738)	hif1al (ENSELUG00000017753)	zgc:152863 (ENSELUG00000001124)	pak4 (ENSELUG00000017809)	ccdc9 (ENSELUG00000017869)	bbc3 (ENSELUG00000024973)	sae1 (ENSELUG00000017913)	ZC3H4 (ENSELUG00000017959)	zgc:154093 (ENSELUG00000017978)	ercc2 (ENSELUG00000018055)	klc3 (ENSELUG00000018079)	CKM (ENSELUG00000018088) ##22	MARK4 (ENSELUG00000018107)	ENSELUG00000032278	ENSELUG00000018405	ENSELUG00000018453	hip1 (ENSELUG00000018521)	BCL7B (ENSELUG00000001376)	baz1b (ENSELUG00000018642)	fzd9b (ENSELUG00000018656)	grk7b (ENSELUG00000018678)	rnf7 (ENSELUG00000025862)	ENSELUG00000001446	RASA2 (ENSELUG00000018810)	ENSELUG00000030354	fbxo36a (ENSELUG00000018838)	trip12 (ENSELUG00000018896)
Euteleostomi	ANCESTRAL SPECIES	684															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b
Actinopterygii	ANCESTRAL SPECIES	581															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b
Reedfish	MODERN SPECIES		si:cabz01085950.1 (ENSECRG00000007234)	ENSECRG00000007258	tnnt2d (ENSECRG00000007289)	CALD1 (ENSECRG00000007402)	bpgm (ENSECRG00000007417)	strap (ENSECRG00000007427)	dera (ENSECRG00000007440)	SLC15A5 (ENSECRG00000007455)	mgst1.1 (ENSECRG00000007469)	lmo3 (ENSECRG00000007496)	arhgef39 (ENSECRG00000007528)	ercc2 (ENSECRG00000007546)	dnali1 (ENSECRG00000007569)	dnali1 (ENSECRG00000007590)	dnali1 (ENSECRG00000007642)	ckmb (ENSECRG00000007659) ##22	rpp14 (ENSECRG00000007673)	HTD2 (ENSECRG00000007680)	xpot (ENSECRG00000007727)	ENSECRG00000007838	rtcb (ENSECRG00000007861)	stmp1 (ENSECRG00000007878)	coa6 (ENSECRG00000007887)	slc13a4 (ENSECRG00000007898)	zgc:162331 (ENSECRG00000007917)	ENSECRG00000007944	ENSECRG00000007978	KCNA1 (ENSECRG00000007987)	KCNA5 (ENSECRG00000007994)	large1 (ENSECRG00000008013)	braf (ENSECRG00000008072)
Neopterygii	ANCESTRAL SPECIES	77	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b	ENSGT00940000166085	ENSGT00940000161313	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000182985.a.b	ENSGT00940000160348	ENSGT00940000165970	ENSGT00440000037640	ENSGT01040000240503.C	ENSGT00940000164418	ENSGT00940000167295	ENSGT00940000154629.A	ENSGT00940000154550.b	ENSGT00640000091563.b
Spotted gar	MODERN SPECIES	658	foxa3 (ENSLOCG00000014809)	nova2 (ENSLOCG00000014804)	polr1g (ENSLOCG00000014803)	ENSLOCG00000017723	eml2 (ENSLOCG00000014791)	ENSLOCG00000014786	ENSLOCG00000014781	CLIP3 (ENSLOCG00000014773)	alkbh6 (ENSLOCG00000014771)	si:ch211-137a8.2 (ENSLOCG00000014768)	ENSLOCG00000017722	zgc:162698 (ENSLOCG00000014761)	capns1b (ENSLOCG00000014756)	zgc:101731 (ENSLOCG00000014754)	klc3 (ENSLOCG00000014748)	ckmb (ENSLOCG00000014743) ##22	MARK4 (ENSLOCG00000014735)	ENSLOCG00000017721	EXOC3L2 (ENSLOCG00000014731)	ENSLOCG00000014727	spint2 (ENSLOCG00000014723)	ENSLOCG00000014720	vaspa (ENSLOCG00000014718)	ccdc61 (ENSLOCG00000014713)	ENSLOCG00000014709	SUPT5H (ENSLOCG00000014703)	timm50 (ENSLOCG00000014699)	chp2 (ENSLOCG00000014696)	rnaset2l (ENSLOCG00000014694)	zgc:171927 (ENSLOCG00000014692)	ENSLOCG00000014690
Osteoglossocephalai	ANCESTRAL SPECIES	30	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000154411	ENSGT01100000263534.b	ENSGT01030000234576.D.a.b.a.b.b.b	ENSGT01030000234613.b.b.g	ENSGT00950000182985.a.b.b	ENSGT00940000160348	ENSGT00940000165970	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	81	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.a ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b	ENSGT01100000263520.a.a.a.a.b.b.b.a.a	ENSGT01030000234613.b.b.g	ENSGT00950000182985.a.b.b	ENSGT00940000160348	ENSGT00940000165970	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00940000167295
Asian bonytongue	MODERN SPECIES	1	eif3k (ENSSFOG00015006575)	ENSSFOG00015006561	DMWD (ENSSFOG00015028542)	ENSSFOG00015006533	hif1al (ENSSFOG00015006520)	zgc:152863 (ENSSFOG00015006509)	pak4 (ENSSFOG00015006490)	ccdc9 (ENSSFOG00015006444)	bbc3 (ENSSFOG00015029334)	sae1 (ENSSFOG00015006393)	ZC3H4 (ENSSFOG00015006342)	zgc:154093 (ENSSFOG00015006333)	ercc2 (ENSSFOG00015006246)	klc3 (ENSSFOG00015006201)	ENSSFOG00015031564	ckmb (ENSSFOG00015006169) ##22	MARK4 (ENSSFOG00015006137)	ENSSFOG00015024471	ENSSFOG00015031320	ENSSFOG00015006083	ENSSFOG00015033344	ppp1r14ab (ENSSFOG00015027845)	spint2 (ENSSFOG00015006018)	ENSSFOG00015006000	supt5h (ENSSFOG00015005973)	ENSSFOG00015028187	ENSSFOG00015028673	cox7a1 (ENSSFOG00015032931)	chp2 (ENSSFOG00015005910)	dlc (ENSSFOG00015005889)	timm50 (ENSSFOG00015005832)
P. kingsleyae	MODERN SPECIES	130	eif3k (ENSPKIG00000007558)	ENSPKIG00000007516	ENSPKIG00000007489	DMWD (ENSPKIG00000007462)	ENSPKIG00000007424	hif1al (ENSPKIG00000007313)	zgc:152863 (ENSPKIG00000007246)	pak4 (ENSPKIG00000007192)	ccdc9 (ENSPKIG00000007100)	bbc3 (ENSPKIG00000007058)	sae1 (ENSPKIG00000007025)	ZC3H4 (ENSPKIG00000006977)	zgc:154093 (ENSPKIG00000006963)	ercc2 (ENSPKIG00000006883)	klc3 (ENSPKIG00000006810)	ckmb (ENSPKIG00000006752) ##22	MARK4 (ENSPKIG00000006683)	ENSPKIG00000006646	ENSPKIG00000006616	ENSPKIG00000006563	ENSPKIG00000006498	ppp1r14ab (ENSPKIG00000006456)	spint2 (ENSPKIG00000006432)	ENSPKIG00000006419	ENSPKIG00000006379	supt5h (ENSPKIG00000006261)	rnaset2l (ENSPKIG00000006201)	cox7a1 (ENSPKIG00000006175)	chp2 (ENSPKIG00000006129)	dlc (ENSPKIG00000006082)	timm50 (ENSPKIG00000006036)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.b ##22
P. kingsleyae	MODERN SPECIES	63	ENSPKIG00000013858	ENSPKIG00000013888	septin6 (ENSPKIG00000013948)	NKRF (ENSPKIG00000013989)	ube2a (ENSPKIG00000014011)	ENSPKIG00000014043	lnx2b (ENSPKIG00000014088)	ENSPKIG00000014162	chic1 (ENSPKIG00000014193)	ENSPKIG00000014211	kdrl (ENSPKIG00000014282)	DLG3 (ENSPKIG00000014439)	ENSPKIG00000014566	ENSPKIG00000014618	arr3a (ENSPKIG00000014709)	CKM (ENSPKIG00000014792) ##22	ENSPKIG00000014820	ENSPKIG00000014842	FNDC3A (ENSPKIG00000014879)	rb1 (ENSPKIG00000014925)	b4galt4 (ENSPKIG00000014983)	zbtb20 (ENSPKIG00000015018)	dub (ENSPKIG00000015032)	ndufc2 (ENSPKIG00000015053)	alg8 (ENSPKIG00000015070)	ccdc90b (ENSPKIG00000015115)	pcf11 (ENSPKIG00000015149)	rab30 (ENSPKIG00000015202)	ENSPKIG00000015222	nars2 (ENSPKIG00000015253)	USP35 (ENSPKIG00000015301)
Asian bonytongue	MODERN SPECIES	19	ENSSFOG00015026534	ENSSFOG00015006311	ENSSFOG00015005902	ENSSFOG00015003656	ENSSFOG00015026890	ENSSFOG00015006037	ENSSFOG00015025988	ENSSFOG00015005946	ENSSFOG00015031089	TRPC7 (ENSSFOG00015003208)	PCDH1 (ENSSFOG00015005856)	rb1 (ENSSFOG00015005831)	alg8 (ENSSFOG00015005782)	zbtb20 (ENSSFOG00015005766)	birc2 (ENSSFOG00015005720)	ENSSFOG00015005699 ##22	ENSSFOG00015005665	TAGLN (ENSSFOG00015005647)	tppp2 (ENSSFOG00015032320)	fpgt (ENSSFOG00015005604)	ENSSFOG00015029428	alkbh6 (ENSSFOG00015005576)	ENSSFOG00015005535	zgc:153990 (ENSSFOG00015005526)	scn4bb (ENSSFOG00015005459)	ENSSFOG00015005441	DSCAML1 (ENSSFOG00015005337)	PRKD2 (ENSSFOG00015005283)	slc1a5 (ENSSFOG00015005253)	ENSSFOG00015026092	ARHGAP35 (ENSSFOG00015005210)
Clupeocephala	ANCESTRAL SPECIES	265											ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000154411	ENSGT01100000263534.b	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b	ENSGT00950000183079.A.b.c.b
Otomorpha	ANCESTRAL SPECIES	65	ENSGT00940000155162.o.b	ENSGT00940000163520.B	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01070000253869	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00940000166502	ENSGT00940000156455
Otophysi	ANCESTRAL SPECIES	93	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01070000253869	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b	ENSGT00950000183079.A.b.c.b	ENSGT00980000198690	ENSGT00940000161656	ENSGT00940000166502
Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000155713	ENSGT00940000156995.a	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00980000199806	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.a.b	ENSGT00950000183052.b.c.b.a.a.a	ENSGT00390000009083.m.a	ENSGT00940000157853.a	ENSGT00940000159493	ENSGT00950000182849.A.f.a.a	ENSGT00940000159222	ENSGT00390000009300.b	ENSGT00940000160099	ENSGT00940000161353	ENSGT00390000016584	ENSGT00940000155838.e	ENSGT00940000155772.a.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	155	ENSGT00390000011000.b	ENSGT00940000155768.B.p	ENSGT00940000155768.B.o.a	ENSGT00390000010722.a	ENSGT00940000155797.l	ENSGT00940000157554.t.b	ENSGT00390000007149.n	ENSGT00390000003413.eb	ENSGT00500000044913.k	ENSGT01020000230625.a	ENSGT00550000075007.x	ENSGT00940000160011.i	ENSGT00940000165053.a	ENSGT00950000182970.C.a	ENSGT00940000167306.c	ENSGT00950000182772.A.a.a.b.c.a ##22	ENSGT00940000159555.v.a.i	ENSGT00730000113263.c.a.b	ENSGT00390000009083.m.a.c.a	ENSGT00940000157853.a.a	ENSGT00940000159493.c	ENSGT00950000182849.A.f.a.a.b	ENSGT00940000159222.e	ENSGT00390000009300.b.d	ENSGT00940000160099.j	ENSGT00940000161353.i	ENSGT00390000016584.b	ENSGT00940000155838.e.a	ENSGT00940000155772.a.a.c	ENSGT00940000159111.c.b	ENSGT00940000157662.g.b.e
Goldfish	MODERN SPECIES	34	PHF12 (ENSCARG00000015532)	SEZ6 (ENSCARG00000015153)	MYO18A (ENSCARG00000012836)	appbp2 (ENSCARG00000012653)	ENSCARG00000012146	ENSCARG00000012022	tmem97 (ENSCARG00000012018)	ift20 (ENSCARG00000012010)	rad1 (ENSCARG00000011987)	bbc3 (ENSCARG00000011979)	sae1 (ENSCARG00000011861)	ZC3H4 (ENSCARG00000011807)	zgc:154093 (ENSCARG00000011795)	ercc2 (ENSCARG00000011242)	klc3 (ENSCARG00000011201)	ckmb (ENSCARG00000011175) ##22	MARK4 (ENSCARG00000011121)	ENSCARG00000011110	ENSCARG00000011097	ENSCARG00000025025	hmbsb (ENSCARG00000024958)	NLRX1 (ENSCARG00000024927)	ENSCARG00000024904	UBE4A (ENSCARG00000024634)	KMT2A (ENSCARG00000024259)	c1qtnf5 (ENSCARG00000024235)	RNF26 (ENSCARG00000024230)	mcamb (ENSCARG00000024186)	cbl (ENSCARG00000023955)	GRIK4 (ENSCARG00000023840)	ARHGEF12 (ENSCARG00000023683)
Cyprininae_a	ANCESTRAL SPECIES	28	ENSGT00940000155599.i.a.a.k	ENSGT00940000155713.y.b	ENSGT00940000156995.a.a	ENSGT00390000011000.b	ENSGT00940000155768.B.o.a	ENSGT00390000010722.a	ENSGT00940000155797.l	ENSGT00390000003413.eb	ENSGT00500000044913.k	ENSGT01020000230625.a	ENSGT00550000075007.x	ENSGT00940000160011.i	ENSGT00940000165053.a	ENSGT00950000182970.C.a	ENSGT00940000167306.c	ENSGT00950000182772.A.a.a.b.c.a ##22	ENSGT00940000159555.v.a.i	ENSGT00390000009083.m.a.c.a	ENSGT00940000157853.a.a	ENSGT00940000159493.c	ENSGT00950000182849.A.f.a.a.b	ENSGT00940000159222.e	ENSGT00390000009300.b.d	ENSGT00940000160099.j	ENSGT00940000161353.i	ENSGT00390000016584.b	ENSGT00940000155838.e.a	ENSGT00940000155772.a.a.c	ENSGT00940000159111.c.b	ENSGT00940000157662.g.b.e	ENSGT00390000008162.f.d
Common carp reference	MODERN SPECIES	39	PHF12 (ENSCCRG00000026409)	SEZ6 (ENSCCRG00000027042)	ENSCCRG00000077050	pipox (ENSCCRG00000063503)	ENSCCRG00000002959	appbp2 (ENSCCRG00000001457)	ENSCCRG00000001614	rad1 (ENSCCRG00000062151)	ift20 (ENSCCRG00000031691)	bbc3 (ENSCCRG00000081368)	sae1 (ENSCCRG00000046535)	ENSCCRG00000046512	zgc:154093 (ENSCCRG00000080440)	klc3 (ENSCCRG00000077799)	ercc2 (ENSCCRG00000046496)	ckmb (ENSCCRG00000050213) ##22	ENSCCRG00000050212	ENSCCRG00000026327	ENSCCRG00000004943	ENSCCRG00000077327	hmbsb (ENSCCRG00000026061)	abcg4b (ENSCCRG00000026044)	ENSCCRG00000025947	phykpl (ENSCCRG00000062524)	ENSCCRG00000024426	ENSCCRG00000077571	c1qtnf5 (ENSCCRG00000024367)	RNF26 (ENSCCRG00000071103)	mcamb (ENSCCRG00000024350)	cbl (ENSCCRG00000024248)	ENSCCRG00000063661
Golden-line barbel	MODERN SPECIES	310						ENSSGRG00000041334	ENSSGRG00000041324	ift20 (ENSSGRG00000041321)	rad1 (ENSSGRG00000041182)	bbc3 (ENSSGRG00000041173)	sae1 (ENSSGRG00000040994)	ZC3H4 (ENSSGRG00000040989)	zgc:154093 (ENSSGRG00000040988)	ercc2 (ENSSGRG00000039718)	klc3 (ENSSGRG00000039423)	ckmb (ENSSGRG00000039348) ##22	ENSSGRG00000039345	MARK4 (ENSSGRG00000039341)	ENSSGRG00000039337	hmbsb (ENSSGRG00000039326)	abcg4b (ENSSGRG00000039324)	NLRX1 (ENSSGRG00000039221)	NHERF4 (ENSSGRG00000039218)	phykpl (ENSSGRG00000039148)	UBE4A (ENSSGRG00000038410)	KMT2A (ENSSGRG00000038389)	c1qtnf5 (ENSSGRG00000038385)	RNF26 (ENSSGRG00000038381)	mcamb (ENSSGRG00000038359)	cbl (ENSSGRG00000037865)	ccdc153 (ENSSGRG00000037858)
Cyprininae	ANCESTRAL SPECIES	13	ENSGT00390000011000.a	ENSGT00940000155768.B.o.b	ENSGT00390000010722.b	ENSGT00940000154169.A.g	ENSGT00940000155797.k	ENSGT00940000157554.t.a	ENSGT00390000007149.m	ENSGT00390000003413.db	ENSGT00500000044913.l	ENSGT01020000230625.b	ENSGT00550000075007.w	ENSGT00940000160011.j	ENSGT00940000165053.b	ENSGT00950000182970.C.b	ENSGT00940000167306.d	ENSGT00950000182772.A.a.a.b.c.b ##22	ENSGT00940000159555.v.a.j	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.a.b.a	ENSGT00950000183052.b.c.b.a.a.a	ENSGT00390000009083.m.a.c.b	ENSGT00940000157853.a.b	ENSGT00940000159493.d	ENSGT00950000182849.A.f.a.a.a	ENSGT00940000159222.f	ENSGT00390000009300.b.c	ENSGT00940000160099.i	ENSGT00940000161353.j	ENSGT00390000016584.a	ENSGT00940000155838.e.b	ENSGT00940000155772.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	27	ENSGT00390000011000.a	ENSGT00940000155768.B.o.b	ENSGT00390000010722.b	ENSGT00940000154169.A.g	ENSGT00940000155797.k	ENSGT00940000157554.t.a	ENSGT00390000007149.m	ENSGT00390000003413.db	ENSGT00500000044913.l	ENSGT01020000230625.b	ENSGT00550000075007.w	ENSGT00940000160011.j	ENSGT00940000165053.b	ENSGT00950000182970.C.b	ENSGT00940000167306.d	ENSGT00950000182772.A.a.a.b.c.b ##22	ENSGT00940000159555.v.a.j	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.a.b.a	ENSGT00950000183052.b.c.b.a.a.a	ENSGT00390000009083.m.a.c.b	ENSGT00940000157853.a.b	ENSGT00940000159493.d	ENSGT00950000182849.A.f.a.a.a	ENSGT00940000159222.f	ENSGT00390000009300.b.c	ENSGT00940000160099.i	ENSGT00940000161353.j	ENSGT00390000016584.a	ENSGT00940000155838.e.b	ENSGT00940000155772.a.a.d
Golden-line barbel	MODERN SPECIES	71	pipox (ENSSGRG00000040892)	MYO18A (ENSSGRG00000040645)	ENSSGRG00000040624	appbp2 (ENSSGRG00000040615)	ENSSGRG00000039418	ENSSGRG00000039393	tmem97 (ENSSGRG00000039392)	ift20 (ENSSGRG00000039391)	rad1 (ENSSGRG00000039372)	bbc3 (ENSSGRG00000039371)	sae1 (ENSSGRG00000039369)	ZC3H4 (ENSSGRG00000039367)	zgc:154093 (ENSSGRG00000039364)	ercc2 (ENSSGRG00000039303)	klc3 (ENSSGRG00000039105)	ckmb (ENSSGRG00000039019) ##22	ENSSGRG00000039017	MARK4 (ENSSGRG00000038997)	ENSSGRG00000038992	ENSSGRG00000038987	hmbsb (ENSSGRG00000038985)	abcg4b (ENSSGRG00000038983)	NLRX1 (ENSSGRG00000038981)	NHERF4 (ENSSGRG00000038980)	phykpl (ENSSGRG00000038973)	UBE4A (ENSSGRG00000038944)	KMT2A (ENSSGRG00000038930)	c1qtnf5 (ENSSGRG00000038924)	RNF26 (ENSSGRG00000038921)	mcamb (ENSSGRG00000038916)	cbl (ENSSGRG00000038555)
Common carp reference	MODERN SPECIES	26	pipox (ENSCCRG00000027026)	ENSCCRG00000026530	appbp2 (ENSCCRG00000028781)	ENSCCRG00000028790	ENSCCRG00000028872	ENSCCRG00000057051	ENSCCRG00000001643	ift20 (ENSCCRG00000001695)	rad1 (ENSCCRG00000001705)	bbc3 (ENSCCRG00000046689)	sae1 (ENSCCRG00000072097)	ENSCCRG00000060992	zgc:154093 (ENSCCRG00000060860)	ercc2 (ENSCCRG00000050233)	klc3 (ENSCCRG00000050218)	ckmb (ENSCCRG00000069118) ##22	ENSCCRG00000051025	ENSCCRG00000064076	ENSCCRG00000058175	ENSCCRG00000041596	ENSCCRG00000075762	abcg4b (ENSCCRG00000041631)	ENSCCRG00000026027	ENSCCRG00000063698	phykpl (ENSCCRG00000025928)	ENSCCRG00000025958	c1qtnf5 (ENSCCRG00000024371)	mcamb (ENSCCRG00000070450)	cbl (ENSCCRG00000024361)	ENSCCRG00000064468	ccdc153 (ENSCCRG00000024240)
Goldfish	MODERN SPECIES	6	pipox (ENSCARG00000007460)	MYO18A (ENSCARG00000007619)	appbp2 (ENSCARG00000007981)	ENSCARG00000008031	ENSCARG00000008150	ENSCARG00000009901	tmem97 (ENSCARG00000009911)	ift20 (ENSCARG00000009916)	rad1 (ENSCARG00000009927)	bbc3 (ENSCARG00000009949)	sae1 (ENSCARG00000009963)	ZC3H4 (ENSCARG00000010009)	zgc:154093 (ENSCARG00000010038)	ercc2 (ENSCARG00000010071)	klc3 (ENSCARG00000010175)	ckmb (ENSCARG00000010198) ##22	MARK4 (ENSCARG00000010212)	ENSCARG00000010305	ENSCARG00000010313	ENSCARG00000010327	hmbsb (ENSCARG00000010396)	abcg4b (ENSCARG00000011305)	NLRX1 (ENSCARG00000012491)	NHERF4 (ENSCARG00000012509)	phykpl (ENSCARG00000012534)	UBE4A (ENSCARG00000013021)	c1qtnf5 (ENSCARG00000014283)	RNF26 (ENSCARG00000014287)	mcamb (ENSCARG00000014291)	cbl (ENSCARG00000014330)	ccdc153 (ENSCARG00000014886)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES		ENSGT01090000260005.a.b.a.b.b.j.c	ENSGT00940000158109.d	ENSGT00810000125570.e	ENSGT00940000160651.c	ENSGT00530000064671.e.a	ENSGT00940000159396.g.a	ENSGT00940000156610.a	ENSGT00390000000306.a	ENSGT01100000263504.a.a	ENSGT00940000164977.a.d	ENSGT00390000002548.h	ENSGT01030000234642.a.b.b.d.b.c.b.a	ENSGT00910000144115.b.bc.b.a	ENSGT00940000158344.a.b.b	ENSGT00940000161313.g	ENSGT00950000182772.A.a.a.b.d.a ##22	ENSGT00940000159555.v.b.e	ENSGT01030000234613.b.b.h.c	ENSGT00950000182985.a.b.a.d	ENSGT00940000164418.a.b.a.a	ENSGT00450000040324.a.a.a.b	ENSGT00940000155478.hb.a.b.d	ENSGT00940000155573.g.b.c	ENSGT00950000183079.A.b.c.b.f	ENSGT00940000163331.a.a.c	ENSGT00940000155242.e	ENSGT00990000205544.d	ENSGT00390000002414.qb	ENSGT00940000165703.d	ENSGT00730000111220.e	ENSGT00940000161362.e
Goldfish	MODERN SPECIES	44	LRCH2 (ENSCARG00000010637)	il13ra2 (ENSCARG00000010626)	tagln2 (ENSCARG00000010611)	ENSCARG00000010606	tppp2 (ENSCARG00000010599)	ENSCARG00000010590	nfkbib (ENSCARG00000010573)	gjd1a (ENSCARG00000010565)	ENSCARG00000010552	crx (ENSCARG00000010543)	kptn (ENSCARG00000010208)	hnrnpl (ENSCARG00000008888)	srsf7a (ENSCARG00000008826)	slc8a2a (ENSCARG00000008802)	nccrp1 (ENSCARG00000008781)	ckma (ENSCARG00000008764) ##22	MARK4 (ENSCARG00000008209)	ENSCARG00000008175	ppp1r14aa (ENSCARG00000008164)	dlb (ENSCARG00000008146)	zgc:153990 (ENSCARG00000008139)	capns1a (ENSCARG00000008117)	nova1 (ENSCARG00000008095)	micu2 (ENSCARG00000008055)	rhogc (ENSCARG00000008047)	taf1 (ENSCARG00000007562)	zgc:158432 (ENSCARG00000007445)	igbp1 (ENSCARG00000007428)	wnt11f2 (ENSCARG00000007413)	eda (ENSCARG00000007395)	nalf2 (ENSCARG00000007380)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000159971.i.a	ENSGT00940000155162.o.a.c	ENSGT00940000163520.A.b.d.a.a	ENSGT00940000153875.d.a.y	ENSGT01100000263516.a.a.b.a.a	ENSGT00940000159120.e.b	ENSGT01090000260005.a.b.a.b.b.j.c	ENSGT00390000000306.a	ENSGT01100000263504.a.a	ENSGT00940000164977.a.d	ENSGT00390000002548.h	ENSGT01030000234642.a.b.b.d.b.c.b.a	ENSGT00910000144115.b.bc.b.a	ENSGT00940000158344.a.b.b	ENSGT00940000161313.g	ENSGT00950000182772.A.a.a.b.d.a ##22	ENSGT00940000159555.v.b.e	ENSGT01030000234613.b.b.h.c	ENSGT00950000182985.a.b.a.d	ENSGT00940000164418.a.b.a.a	ENSGT00450000040324.a.a.a.b	ENSGT00940000155478.hb.a.b.d	ENSGT00510000048626.l	ENSGT00940000155573.g.b.c	ENSGT00950000183079.A.b.c.b.f	ENSGT00940000163331.a.a.c	ENSGT00940000155242.e	ENSGT00990000205544.d	ENSGT00390000002414.qb	ENSGT00940000165703.d	ENSGT00730000111220.e
Common carp reference	MODERN SPECIES	7	ENSCCRG00000058465	ENSCCRG00000018884	il13ra2 (ENSCCRG00000041886)	tagln2 (ENSCCRG00000050033)	ENSCCRG00000050034	ENSCCRG00000079881	nfkbib (ENSCCRG00000057077)	gjd1a (ENSCCRG00000051184)	ENSCCRG00000077888	crx (ENSCCRG00000081022)	kptn (ENSCCRG00000015307)	hnrnpl (ENSCCRG00000026212)	srsf7a (ENSCCRG00000051088)	slc8a2a (ENSCCRG00000001445)	nccrp1 (ENSCCRG00000001397)	ckma (ENSCCRG00000065693) ##22	ENSCCRG00000057555	ENSCCRG00000029329	ENSCCRG00000029333	dlb (ENSCCRG00000055242)	zgc:153990 (ENSCCRG00000029380)	capns1a (ENSCCRG00000029351)	alkbh6 (ENSCCRG00000029381)	nova1 (ENSCCRG00000068281)	micu2 (ENSCCRG00000077606)	rhogc (ENSCCRG00000029338)	taf1 (ENSCCRG00000029372)	zgc:158432 (ENSCCRG00000029716)	igbp1 (ENSCCRG00000029727)	wnt11f2 (ENSCCRG00000046476)	eda (ENSCCRG00000066091)
Golden-line barbel	MODERN SPECIES	214	zgc:163098 (ENSSGRG00000034592)	LRCH2 (ENSSGRG00000034594)	il13ra2 (ENSSGRG00000034599)	tagln2 (ENSSGRG00000034601)	ENSSGRG00000034616	tppp2 (ENSSGRG00000034617)	nfkbib (ENSSGRG00000034619)	gjd1a (ENSSGRG00000034620)	ENSSGRG00000034623	crx (ENSSGRG00000034680)	kptn (ENSSGRG00000034683)	hnrnpl (ENSSGRG00000034698)	srsf7a (ENSSGRG00000035091)	slc8a2a (ENSSGRG00000035095)	nccrp1 (ENSSGRG00000035100)	ckma (ENSSGRG00000035122) ##22	ENSSGRG00000035881	ENSSGRG00000036725	ppp1r14aa (ENSSGRG00000036729)	dlb (ENSSGRG00000036730)	capns1a (ENSSGRG00000036731)	alkbh6 (ENSSGRG00000036732)	nova1 (ENSSGRG00000036733)	micu2 (ENSSGRG00000036734)	rhogc (ENSSGRG00000036735)	taf1 (ENSSGRG00000036747)	igbp1 (ENSSGRG00000037451)	wnt11f2 (ENSSGRG00000037452)	eda (ENSSGRG00000037453)	nalf2 (ENSSGRG00000037455)	efnb1 (ENSSGRG00000037456)
Cyprininae	ANCESTRAL SPECIES	177	ENSGT00940000160039.h	ENSGT00940000159971.i.b	ENSGT00940000155162.o.a.d	ENSGT00940000153875.d.a.z	ENSGT01100000263516.a.a.b.b	ENSGT00940000159120.e.a	ENSGT01090000260005.a.b.a.b.b.j.d	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a.c	ENSGT00390000002548.g	ENSGT01030000234642.a.b.b.d.b.c.b.b	ENSGT00910000144115.b.bc.b.b	ENSGT00940000158344.a.b.a	ENSGT00940000161313.h	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.d.b ##22	ENSGT00940000159555.v.b.f	ENSGT01030000234613.b.b.h.d	ENSGT00950000182985.a.b.a.c	ENSGT00940000164418.a.b.a.b	ENSGT00450000040324.a.a.a.a	ENSGT00940000155478.hb.a.b.c.b	ENSGT00510000048626	ENSGT00940000155573.g.b.d	ENSGT00950000183079.A.b.c.b.e	ENSGT00940000163331.a.a.d	ENSGT00940000155242.f	ENSGT00990000205544.c	ENSGT00390000002414.pb	ENSGT00940000165703.c	ENSGT00730000111220.f
Cyprininae_a	ANCESTRAL SPECIES	22	ENSGT00390000010687.a.b.e.b	ENSGT00940000160039.h	ENSGT00940000159971.i.b	ENSGT00940000155162.o.a.d	ENSGT00940000153875.d.a.z	ENSGT01100000263516.a.a.b.b	ENSGT00940000159120.e.a	ENSGT01090000260005.a.b.a.b.b.j.d	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a.c	ENSGT00390000002548.g	ENSGT01030000234642.a.b.b.d.b.c.b.b	ENSGT00910000144115.b.bc.b.b	ENSGT00940000158344.a.b.a	ENSGT00940000161313.h	ENSGT00950000182772.A.a.a.b.d.b ##22	ENSGT00940000159555.v.b.f	ENSGT00950000182985.a.b.a.c	ENSGT00940000164418.a.b.b	ENSGT00940000164418.a.b.a.b	ENSGT00450000040324.a.a.a.a	ENSGT00940000155478.hb.a.b.c.b	ENSGT00510000048626.k	ENSGT00940000155573.g.b.d	ENSGT00950000183079.A.b.c.b.e	ENSGT00940000163331.a.a.d	ENSGT00940000155242.f	ENSGT00990000205544.c	ENSGT00390000002414.pb	ENSGT00940000165703.c	ENSGT00730000111220.f
Common carp reference	MODERN SPECIES	15	ENSCCRG00000007998	zgc:163098 (ENSCCRG00000066974)	ENSCCRG00000060651	il13ra2 (ENSCCRG00000009320)	tagln2 (ENSCCRG00000009336)	ENSCCRG00000036822	ENSCCRG00000051188	nfkbib (ENSCCRG00000012260)	gjd1a (ENSCCRG00000012255)	crx (ENSCCRG00000079912)	kptn (ENSCCRG00000027527)	hnrnpl (ENSCCRG00000015395)	srsf7a (ENSCCRG00000051085)	slc8a2a (ENSCCRG00000051082)	nccrp1 (ENSCCRG00000051077)	ckma (ENSCCRG00000075938) ##22	ENSCCRG00000063598	ENSCCRG00000024671	dlb (ENSCCRG00000029341)	zgc:153990 (ENSCCRG00000068105)	alkbh6 (ENSCCRG00000062697)	nova1 (ENSCCRG00000054430)	rhogc (ENSCCRG00000068992)	micu2 (ENSCCRG00000029395)	taf1 (ENSCCRG00000004961)	zgc:158432 (ENSCCRG00000004766)	igbp1 (ENSCCRG00000004755)	wnt11f2 (ENSCCRG00000004745)	eda (ENSCCRG00000071662)	nalf2 (ENSCCRG00000046471)	efnb1 (ENSCCRG00000066488)
Golden-line barbel	MODERN SPECIES	347	ENSSGRG00000030859	ENSSGRG00000030862	il13ra2 (ENSSGRG00000030863)	tagln2 (ENSSGRG00000030864)	tppp2 (ENSSGRG00000030865)	ENSSGRG00000030866	nfkbib (ENSSGRG00000030867)	gjd1a (ENSSGRG00000030868)	ENSSGRG00000030869	crx (ENSSGRG00000030889)	kptn (ENSSGRG00000030891)	hnrnpl (ENSSGRG00000030916)	srsf7a (ENSSGRG00000031401)	slc8a2a (ENSSGRG00000031402)	nccrp1 (ENSSGRG00000031403)	ckma (ENSSGRG00000031408) ##22	ENSSGRG00000031950	ENSSGRG00000031952	ppp1r14aa (ENSSGRG00000032006)	ENSSGRG00000032007	zgc:153990 (ENSSGRG00000032008)	capns1a (ENSSGRG00000032009)	alkbh6 (ENSSGRG00000032010)	nova1 (ENSSGRG00000032012)	micu2 (ENSSGRG00000032013)	taf1 (ENSSGRG00000032015)	zgc:158432 (ENSSGRG00000032365)	igbp1 (ENSSGRG00000032368)	wnt11f2 (ENSSGRG00000032369)	eda (ENSSGRG00000032373)	nalf2 (ENSSGRG00000032375)
Goldfish	MODERN SPECIES	23	il13ra2 (ENSCARG00000021178)	tagln2 (ENSCARG00000021160)	ENSCARG00000021150	tppp2 (ENSCARG00000021143)	ENSCARG00000021138	nfkbib (ENSCARG00000021130)	gjd1a (ENSCARG00000021120)	ENSCARG00000021114	crx (ENSCARG00000021105)	ENSCARG00000021089	hnrnpl (ENSCARG00000019858)	srsf7a (ENSCARG00000019792)	slc8a2a (ENSCARG00000019785)	nccrp1 (ENSCARG00000019777)	ENSCARG00000019772	ckma (ENSCARG00000019747) ##22	ENSCARG00000019607	ENSCARG00000019587	ppp1r14aa (ENSCARG00000019580)	dlb (ENSCARG00000019565)	zgc:153990 (ENSCARG00000019554)	capns1a (ENSCARG00000019538)	alkbh6 (ENSCARG00000019529)	nova1 (ENSCARG00000019504)	micu2 (ENSCARG00000019467)	rhogc (ENSCARG00000019459)	ENSCARG00000019434	igbp1 (ENSCARG00000019428)	wnt11f2 (ENSCARG00000019417)	eda (ENSCARG00000019414)	nalf2 (ENSCARG00000019407)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	6	MYO18A (ENSDARG00000061862)	appbp2 (ENSDARG00000007566)	ENSDARG00000097871	USP6 (ENSDARG00000061895)	ENSDARG00000086369	ENSDARG00000097770	tmem97 (ENSDARG00000040553)	ift20 (ENSDARG00000040556)	rad1 (ENSDARG00000040559)	bbc3 (ENSDARG00000069282)	sae1 (ENSDARG00000010487)	ZC3H4 (ENSDARG00000078355)	zgc:154093 (ENSDARG00000055897)	ercc2 (ENSDARG00000021985)	klc3 (ENSDARG00000055965)	ckmb (ENSDARG00000040565) ##22	MARK4 (ENSDARG00000024966)	ENSDARG00000069270	ENSDARG00000096614	ENSDARG00000075834	ENSDARG00000096575	hmbsb (ENSDARG00000055991)	abcg4b (ENSDARG00000078068)	NLRX1 (ENSDARG00000073724)	NHERF4 (ENSDARG00000040568)	phykpl (ENSDARG00000040566)	UBE4A (ENSDARG00000040571)	kmt2a (ENSDARG00000004537)	c1qtnf5 (ENSDARG00000056134)	RNF26 (ENSDARG00000074074)	mcamb (ENSDARG00000005368)
Zebrafish	MODERN SPECIES	20	il13ra2 (ENSDARG00000039436)	tagln2 (ENSDARG00000033466)	ENSDARG00000100476	tppp2 (ENSDARG00000035338)	ENSDARG00000101155	ENSDARG00000035339	nfkbib (ENSDARG00000030087)	gjd1a (ENSDARG00000111977)	h3f3c (ENSDARG00000033009)	crx (ENSDARG00000011989)	kptn (ENSDARG00000015937)	hnrnpl (ENSDARG00000035324)	srsf7a (ENSDARG00000035325)	slc8a2a (ENSDARG00000008912)	nccrp1 (ENSDARG00000035326)	ckma (ENSDARG00000035327) ##22	ENSDARG00000023914	ENSDARG00000008414	ppp1r14aa (ENSDARG00000011239)	dlb (ENSDARG00000004232)	zgc:153990 (ENSDARG00000053716)	capns1a (ENSDARG00000035329)	alkbh6 (ENSDARG00000077253)	ENSDARG00000116148	nova1 (ENSDARG00000020178)	micu2 (ENSDARG00000009939)	rhogc (ENSDARG00000028401)	taf1 (ENSDARG00000035330)	zgc:158432 (ENSDARG00000067806)	igbp1 (ENSDARG00000002184)	wnt11f2 (ENSDARG00000004256)
Characiphysae	ANCESTRAL SPECIES	22	ENSGT00940000155599.i.a.a.k	ENSGT00940000156995.a	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00980000199806	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b.b	ENSGT01030000234613.b.b.g	ENSGT00950000182985.a.b.b	ENSGT00940000160348.r	ENSGT00940000165970	ENSGT00990000205582	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00950000183143.d
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	8	pipox (ENSIPUG00000006072)	MYO18A (ENSIPUG00000006101)	appbp2 (ENSIPUG00000006419)	ENSIPUG00000006462	ENSIPUG00000006488	ENSIPUG00000006558	tmem97 (ENSIPUG00000006583)	ift20 (ENSIPUG00000006595)	rad1 (ENSIPUG00000006652)	bbc3 (ENSIPUG00000006673)	sae1 (ENSIPUG00000006681)	zc3h4 (ENSIPUG00000006735)	zgc:154093 (ENSIPUG00000006756)	ercc2 (ENSIPUG00000006778)	klc3 (ENSIPUG00000006861)	ckmb (ENSIPUG00000006893) ##22	mark4 (ENSIPUG00000006993)	ENSIPUG00000007067	ENSIPUG00000007076	exoc3l2 (ENSIPUG00000007095)	ppp1r14a (ENSIPUG00000007184)	spint2 (ENSIPUG00000007188)	plekhg2 (ENSIPUG00000007203)	ENSIPUG00000007278	supt5h (ENSIPUG00000007308)	rnaset2l (ENSIPUG00000007500)	COX7A2 (ENSIPUG00000007538)	CHP2 (ENSIPUG00000007572)	dll3 (ENSIPUG00000007611)	timm50 (ENSIPUG00000007648)	tnfaip1 (ENSIPUG00000007673)
Channel catfish	MODERN SPECIES	20	tagln2 (ENSIPUG00000019407)	TPPP3 (ENSIPUG00000019389)	ENSIPUG00000019350	Nfkbib (ENSIPUG00000019330)	gjd1a (ENSIPUG00000019327)	H33 (ENSIPUG00000019301)	crx (ENSIPUG00000019241)	kptn (ENSIPUG00000019192)	hnrnpl (ENSIPUG00000019108)	srsf7a (ENSIPUG00000019088)	slc8a2a (ENSIPUG00000019066)	nccrp1 (ENSIPUG00000018986)	ENSIPUG00000018969	ENSIPUG00000018961	ENSIPUG00000018950	ckma (ENSIPUG00000018864) ##22	MARK4 (ENSIPUG00000018786)	ENSIPUG00000018764	CPI17 (ENSIPUG00000018746)	dlb (ENSIPUG00000018702)	Naif1 (ENSIPUG00000018692)	capns1 (ENSIPUG00000018683)	alkbh6 (ENSIPUG00000018672)	nova1 (ENSIPUG00000018651)	micu2 (ENSIPUG00000018592)	ENSIPUG00000018555	ENSIPUG00000018545	rpl36a (ENSIPUG00000018512)	glra4b (ENSIPUG00000018478)	aifm1 (ENSIPUG00000018310)	tnfsf10l4 (ENSIPUG00000018299)
Characiphysae_b	ANCESTRAL SPECIES	14	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00940000172043	ENSGT00940000155797	ENSGT00940000157554	ENSGT00390000018883	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b.b	ENSGT01030000234613.b.b.g	ENSGT00950000182985.a.b.b	ENSGT00940000160348.r	ENSGT00940000165970	ENSGT00990000205582	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00950000183143.d
Characoidei	ANCESTRAL SPECIES	12	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00980000199806	ENSGT00940000155797	ENSGT00940000157554	ENSGT00390000018883	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b.b	ENSGT01030000234613.b.b.g	ENSGT00950000182985.a.b.b	ENSGT00940000160348.r	ENSGT00940000165970	ENSGT00990000205582	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00950000183143.d
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	35	SEZ6 (ENSPNAG00000009752)	pipox (ENSPNAG00000009774)	MYO18A (ENSPNAG00000009895)	appbp2 (ENSPNAG00000001355)	ENSPNAG00000010097	ENSPNAG00000010127	tmem97 (ENSPNAG00000010149)	ift20 (ENSPNAG00000010164)	rad1 (ENSPNAG00000010191)	bbc3 (ENSPNAG00000010216)	sae1 (ENSPNAG00000010268)	ZC3H4 (ENSPNAG00000010326)	zgc:154093 (ENSPNAG00000010334)	ercc2 (ENSPNAG00000010434)	klc3 (ENSPNAG00000010510)	ckmb (ENSPNAG00000010530) ##22	MARK4 (ENSPNAG00000010635)	ENSPNAG00000010657	ENSPNAG00000010678	ENSPNAG00000010752	ENSPNAG00000010790	ppp1r14ab (ENSPNAG00000001443)	spint2 (ENSPNAG00000010814)	ENSPNAG00000010847	ENSPNAG00000010863	supt5h (ENSPNAG00000010925)	rnaset2l (ENSPNAG00000010950)	cox7a1 (ENSPNAG00000010970)	chp2 (ENSPNAG00000010994)	dlc (ENSPNAG00000011020)	timm50 (ENSPNAG00000001489)
Red-bellied piranha	MODERN SPECIES	606												ENSPNAG00000023919	ENSPNAG00000023933	ENSPNAG00000023947	ENSPNAG00000023960	ckma (ENSPNAG00000023987) ##22	ENSPNAG00000024036	ENSPNAG00000007047	ppp1r14aa (ENSPNAG00000007120)	dlb (ENSPNAG00000005853)	zgc:153990 (ENSPNAG00000024162)	CAPNS1 (ENSPNAG00000024191)	alkbh6 (ENSPNAG00000024220)	nova1 (ENSPNAG00000024351)	ENSPNAG00000024367	ENSPNAG00000024399
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES		SIK3 (ENSAMXG00000035205)	ENSAMXG00000007621	ENSAMXG00000034924	ENSAMXG00000029410	MPZL2 (ENSAMXG00000029789)	ENSAMXG00000007631	gap43 (ENSAMXG00000036239)	LSAMP (ENSAMXG00000007640)	ENSAMXG00000040555	ENSAMXG00000038334	ENSAMXG00000042567	ZC3H4 (ENSAMXG00000009037)	zgc:154093 (ENSAMXG00000009048)	ercc2 (ENSAMXG00000009052)	klc3 (ENSAMXG00000009064)	ckmb (ENSAMXG00000038743) ##22	MARK4 (ENSAMXG00000009077)	ENSAMXG00000035203	ENSAMXG00000042407	ENSAMXG00000024870	ENSAMXG00000038122	ENSAMXG00000033299	ENSAMXG00000009090	ppp1r14ab (ENSAMXG00000041500)	spint2 (ENSAMXG00000042875)	ENSAMXG00000009112	ENSAMXG00000040678	supt5h (ENSAMXG00000009128)	rnaset2l (ENSAMXG00000042594)	cox7a1 (ENSAMXG00000009169)	chp2 (ENSAMXG00000009173)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000029859	ENSAMXG00000001701	ENSAMXG00000001671	nfkbib (ENSAMXG00000001646)	gjd1a (ENSAMXG00000037293)	ENSAMXG00000038983	crx (ENSAMXG00000001577)	ENSAMXG00000044060	ENSAMXG00000001557	kptn (ENSAMXG00000001548)	hnrnpl (ENSAMXG00000001542)	srsf7a (ENSAMXG00000001532)	slc8a2a (ENSAMXG00000001525)	nccrp1 (ENSAMXG00000037998)	ENSAMXG00000001486	ckma (ENSAMXG00000020477) ##22	MARK4 (ENSAMXG00000001432)	ENSAMXG00000043279	ppp1r14aa (ENSAMXG00000042781)	dlb (ENSAMXG00000006640)	zgc:153990 (ENSAMXG00000034870)	CAPNS1 (ENSAMXG00000006676)	alkbh6 (ENSAMXG00000033280)	nova1 (ENSAMXG00000006702)	micu2 (ENSAMXG00000006705)	ENSAMXG00000038265	ENSAMXG00000033862	ENSAMXG00000036477	ENSAMXG00000031650	ENSAMXG00000006767	ENSAMXG00000031780
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	25	pipox (ENSEEEG00000024605)	MYO18A (ENSEEEG00000024595)	appbp2 (ENSEEEG00000024588)	ENSEEEG00000024587	ENSEEEG00000024586	ENSEEEG00000024585	tmem97 (ENSEEEG00000024584)	ift20 (ENSEEEG00000024583)	rad1 (ENSEEEG00000024582)	bbc3 (ENSEEEG00000024581)	sae1 (ENSEEEG00000024580)	ZC3H4 (ENSEEEG00000024579)	zgc:154093 (ENSEEEG00000024578)	ercc2 (ENSEEEG00000024576)	klc3 (ENSEEEG00000024575)	ckmb (ENSEEEG00000024569) ##22	MARK4 (ENSEEEG00000024563)	ENSEEEG00000024562	ENSEEEG00000024561	ENSEEEG00000024560	ENSEEEG00000024559	ppp1r14ab (ENSEEEG00000024558)	spint2 (ENSEEEG00000024557)	ENSEEEG00000024556	ENSEEEG00000024555	supt5h (ENSEEEG00000024554)	rnaset2l (ENSEEEG00000024553)	cox7a1 (ENSEEEG00000024552)	chp2 (ENSEEEG00000024551)	dlc (ENSEEEG00000024550)	timm50 (ENSEEEG00000024549)
Electric eel	MODERN SPECIES	764																ckma (ENSEEEG00000021979) ##22	ENSEEEG00000021975	ENSEEEG00000021974	ppp1r14aa (ENSEEEG00000021973)	dlb (ENSEEEG00000021971)	zgc:153990 (ENSEEEG00000021970)	CAPNS1 (ENSEEEG00000021969)	alkbh6 (ENSEEEG00000021967)	ENSEEEG00000021966	nova1 (ENSEEEG00000021965)	micu2 (ENSEEEG00000021959)
Clupeiformes	ANCESTRAL SPECIES	272								ENSGT00970000195665	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT01030000234613.b.b.g	ENSGT00950000182985.a.b.b	ENSGT00940000176181	ENSGT00940000172731	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000019466	tbx5b (ENSCHAG00000019474)	PRPS1L1 (ENSCHAG00000019507)	ENSCHAG00000019684	ENSCHAG00000019691	abhd11 (ENSCHAG00000019756)	cldn3c (ENSCHAG00000019768)	CLDN4 (ENSCHAG00000019799)	CLDN4 (ENSCHAG00000019811)	ENSCHAG00000019815	ENSCHAG00000019821	cldn30 (ENSCHAG00000019839)	mettl27 (ENSCHAG00000019852)	nf2b (ENSCHAG00000019871)	nccrp1 (ENSCHAG00000020317)	ckma (ENSCHAG00000020329) ##22	MARK4 (ENSCHAG00000020370)	HAND1 (ENSCHAG00000020571)	sap30l (ENSCHAG00000020577)	GALNT10 (ENSCHAG00000020603)	ENSCHAG00000021015	abhd11 (ENSCHAG00000021850)	GRM5 (ENSCHAG00000021920)	RAB38 (ENSCHAG00000021932)	tmem135 (ENSCHAG00000021938)	ENSCHAG00000021982	HEPH (ENSCHAG00000021997)	slc43a2b (ENSCHAG00000022549)	PITPNA (ENSCHAG00000023894)	INPP5K (ENSCHAG00000023940)	ENSCHAG00000023967
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	10	tfdp2 (ENSDCDG00000017332)	atp1b3b (ENSDCDG00000017330)	TRIM50 (ENSDCDG00000017327)	ece2b (ENSDCDG00000014455)	ANO7 (ENSDCDG00000014319)	zgc:152863 (ENSDCDG00000014307)	ENSDCDG00000014299	ENSDCDG00000014291	ccdc9 (ENSDCDG00000014271)	bbc3 (ENSDCDG00000014263)	sae1 (ENSDCDG00000014249)	ZC3H4 (ENSDCDG00000014234)	zgc:154093 (ENSDCDG00000014222)	ercc2 (ENSDCDG00000013475)	klc3 (ENSDCDG00000013401)	ckmb (ENSDCDG00000013389) ##22	MARK4 (ENSDCDG00000010890)	ENSDCDG00000010813	ENSDCDG00000010809	ENSDCDG00000010805	ENSDCDG00000010801	ENSDCDG00000010795	ppp1r14ab (ENSDCDG00000010794)	ENSDCDG00000010790	ENSDCDG00000010787	supt5h (ENSDCDG00000008204)	rnaset2l (ENSDCDG00000007963)	cox7a1 (ENSDCDG00000007809)	chp2 (ENSDCDG00000007787)	dlc (ENSDCDG00000007774)	timm50 (ENSDCDG00000007769)
Denticle herring	MODERN SPECIES	16	ENSDCDG00000019281	ENSDCDG00000019277	ucp3 (ENSDCDG00000019271)	ucp2 (ENSDCDG00000019266)	dnajb13 (ENSDCDG00000019259)	mrpl48 (ENSDCDG00000019252)	rab6a (ENSDCDG00000019210)	plekhb1 (ENSDCDG00000019204)	GALNT10 (ENSDCDG00000018936)	TPCN1 (ENSDCDG00000018896)	ENSDCDG00000018889	sap30l (ENSDCDG00000018884)	slc8a2a (ENSDCDG00000018882)	nccrp1 (ENSDCDG00000018592)	ENSDCDG00000018570	ckma (ENSDCDG00000018538) ##22	ENSDCDG00000018533	ENSDCDG00000018523	ENSDCDG00000018520	cryba1b (ENSDCDG00000018516)	unc119b (ENSDCDG00000018513)	slc13a2 (ENSDCDG00000018144)	vtnb (ENSDCDG00000018117)	aldh3a2b (ENSDCDG00000017939)	ca4c (ENSDCDG00000017905)	asl (ENSDCDG00000017466)	zgc:152891 (ENSDCDG00000017429)	ncbp3 (ENSDCDG00000017405)	coro6 (ENSDCDG00000017359)	ENSDCDG00000014397	vaspa (ENSDCDG00000014129)
Euteleosteomorpha	ANCESTRAL SPECIES	139	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00980000198690	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000154411	ENSGT00940000153582.a.m.a.a.b.b.b.b.b	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Tetraodon	MODERN SPECIES	26	noa1 (ENSTNIG00000002042)	cyp1b1 (ENSTNIG00000002045)	ENSTNIG00000002047	ENSTNIG00000002048	ENSTNIG00000002049	ENSTNIG00000002052	ENSTNIG00000002053	ENSTNIG00000002055	ptbp1a (ENSTNIG00000002060)	chchd2 (ENSTNIG00000002061)	ENSTNIG00000002062	FAM163B (ENSTNIG00000000629)	srd5a1 (ENSTNIG00000002063)	ENSTNIG00000002065	paqr3a (ENSTNIG00000002066)	ENSTNIG00000002067 ##22	ENSTNIG00000002068	ENSTNIG00000000257	ENSTNIG00000002069	ENSTNIG00000002070	ENSTNIG00000002071	TOB2 (ENSTNIG00000002073)	ENSTNIG00000019753	ENSTNIG00000002075	panx1a (ENSTNIG00000002076)	gmppb (ENSTNIG00000002077)	ENSTNIG00000002078	ENSTNIG00000002079	crlf3 (ENSTNIG00000011283)	ENSTNIG00000002080	ENSTNIG00000002081
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES	14	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a
Cod	MODERN SPECIES	20	ENSGMOG00000034055	ENSGMOG00000032175	acer3 (ENSGMOG00000007373)	serpinh1a (ENSGMOG00000007382)	ENSGMOG00000008552	samsn1b (ENSGMOG00000008566)	usp25 (ENSGMOG00000008601)	ENSGMOG00000008623	bhlha9 (ENSGMOG00000008634)	ENSGMOG00000008639	ENSGMOG00000008664	ENSGMOG00000019843	hnrnpl (ENSGMOG00000008678)	slc8a2a (ENSGMOG00000008693)	nccrp1 (ENSGMOG00000008715)	ckma (ENSGMOG00000008778) ##22	ENSGMOG00000008788	ENSGMOG00000008814	ppp1r14aa (ENSGMOG00000011234)	dlb (ENSGMOG00000011226)	zgc:153990 (ENSGMOG00000011238)	capns1a (ENSGMOG00000011247)	nova1 (ENSGMOG00000011253)	ENSGMOG00000011261	ENSGMOG00000011273	ENSGMOG00000032800	ENSGMOG00000011282	VPS26B (ENSGMOG00000024935)	ENSGMOG00000003711	IGSF9B (ENSGMOG00000011998)	fez1 (ENSGMOG00000017749)
Euacanthomorphacea	ANCESTRAL SPECIES	19	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Pinecone sodierfish	MODERN SPECIES	5	ENSMMDG00005002977	ENSMMDG00005002970	akt2l (ENSMMDG00005002889)	ENSMMDG00005002862	CBLB (ENSMMDG00005002829)	alcama (ENSMMDG00005002424)	ZPLD1 (ENSMMDG00005002408)	picalma (ENSMMDG00005002360)	ENSMMDG00005002345	dlg2 (ENSMMDG00005002196)	BBX (ENSMMDG00005002185)	vps11 (ENSMMDG00005001933)	slc8a2a (ENSMMDG00005001268)	nccrp1 (ENSMMDG00005001218)	ENSMMDG00005001208	ckma (ENSMMDG00005018692) ##22	MARK4 (ENSMMDG00005018680)	ENSMMDG00005018675	ppp1r14aa (ENSMMDG00005018672)	dlb (ENSMMDG00005018642)	zgc:153990 (ENSMMDG00005018638)	capns1b (ENSMMDG00005018623)	nova1 (ENSMMDG00005018614)	kptn (ENSMMDG00005018610)	crx (ENSMMDG00005018609)	ENSMMDG00005018607	ARHGAP32 (ENSMMDG00005016404)	vps26bl (ENSMMDG00005016371)	jam3b (ENSMMDG00005016361)	IGSF9B (ENSMMDG00005016353)	ENSMMDG00005016347
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Tiger tail seahorse	MODERN SPECIES	497					ENSHCOG00000008839	samsn1b (ENSHCOG00000008824)	ENSHCOG00000008798	usp25 (ENSHCOG00000008781)	WSCD1 (ENSHCOG00000008680)	ENSHCOG00000008634	micu2 (ENSHCOG00000008610)	irf2bp1 (ENSHCOG00000008582)	hnrnpl (ENSHCOG00000008575)	slc8a2a (ENSHCOG00000008560)	nccrp1 (ENSHCOG00000008491)	ckma (ENSHCOG00000008473) ##22	MARK4 (ENSHCOG00000008450)	ENSHCOG00000008420	ppp1r14aa (ENSHCOG00000008414)	dlb (ENSHCOG00000008406)	zgc:153990 (ENSHCOG00000008391)	capns1b (ENSHCOG00000008383)	nova1 (ENSHCOG00000008366)	kptn (ENSHCOG00000008352)	crx (ENSHCOG00000008330)	ENSHCOG00000008323	ARHGAP32 (ENSHCOG00000008304)	ENSHCOG00000008040	vps26bl (ENSHCOG00000008033)	jam3b (ENSHCOG00000008022)	IGSF9B (ENSHCOG00000008003)
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Pleuronectoidei	ANCESTRAL SPECIES	27	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Tongue sole	MODERN SPECIES	10	ENSCSEG00000018353	nf2b (ENSCSEG00000018208)	mettl27 (ENSCSEG00000018192)	ENSCSEG00000018182	sdf2 (ENSCSEG00000018175)	supt6h (ENSCSEG00000018147)	ENSCSEG00000018133	ENSCSEG00000018092	nsrp1 (ENSCSEG00000018083)	ssh2b (ENSCSEG00000018059)	ENSCSEG00000018045	coro6 (ENSCSEG00000018011)	hnrnpl (ENSCSEG00000017990)	slc8a2a (ENSCSEG00000017915)	nccrp1 (ENSCSEG00000017905)	ckma (ENSCSEG00000017890) ##22	MARK4 (ENSCSEG00000017841)	ENSCSEG00000017779	ppp1r14aa (ENSCSEG00000017768)	dlb (ENSCSEG00000017752)	zgc:153990 (ENSCSEG00000017741)	capns1b (ENSCSEG00000017727)	nova1 (ENSCSEG00000017718)	kptn (ENSCSEG00000017700)	crx (ENSCSEG00000017693)	ENSCSEG00000017680	ARHGAP32 (ENSCSEG00000017589)	vps26bl (ENSCSEG00000017567)	jam3b (ENSCSEG00000017560)	IGSF9B (ENSCSEG00000017515)	ENSCSEG00000017500
Turbot	MODERN SPECIES	16	sptlc1 (ENSSMAG00000007339)	ROR2 (ENSSMAG00000007314)	nfil3 (ENSSMAG00000007302)	auh (ENSSMAG00000007280)	syk (ENSSMAG00000007199)	ENSSMAG00000014929	ENSSMAG00000006988	ENSSMAG00000006975	ENSSMAG00000006929	ENSSMAG00000006862	ENSSMAG00000006823	ENSSMAG00000006800	ENSSMAG00000006742	ENSSMAG00000006702	ENSSMAG00000006696	ckma (ENSSMAG00000006685) ##22	ENSSMAG00000006616	ENSSMAG00000006566	ppp1r14aa (ENSSMAG00000006554)	dlb (ENSSMAG00000006534)	zgc:153990 (ENSSMAG00000006509)	capns1a (ENSSMAG00000006492)	nova1 (ENSSMAG00000006485)	ENSSMAG00000006441	Otx5 (ENSSMAG00000006403)	ENSSMAG00000006379	ENSSMAG00000006246	VPS26B (ENSSMAG00000006221)	ENSSMAG00000006198	IGSF9B (ENSSMAG00000006092)	ENSSMAG00000006073
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b	ENSGT00390000017627.b
Barramundi perch	MODERN SPECIES	94	ENSLCAG00010014996	acer3 (ENSLCAG00010014987)	serpinh1a (ENSLCAG00010014979)	GDPD5 (ENSLCAG00010014965)	samsn1b (ENSLCAG00010014951)	ENSLCAG00010014946	usp25 (ENSLCAG00010014316)	WSCD1 (ENSLCAG00010014206)	bhlha9 (ENSLCAG00010014204)	ENSLCAG00010014193	micu2 (ENSLCAG00010014180)	irf2bp1 (ENSLCAG00010014175)	hnrnpl (ENSLCAG00010014138)	slc8a2a (ENSLCAG00010014117)	nccrp1 (ENSLCAG00010014107)	ckma (ENSLCAG00010014042) ##22	ENSLCAG00010014025	MARK4 (ENSLCAG00010013981)	ENSLCAG00010013970	ppp1r14aa (ENSLCAG00010013967)	dlb (ENSLCAG00010013965)	zgc:153990 (ENSLCAG00010013964)	capns1b (ENSLCAG00010013962)	nova1 (ENSLCAG00010013957)	kptn (ENSLCAG00010013946)	crx (ENSLCAG00010013942)	ARHGAP32 (ENSLCAG00010013780)	vps26bl (ENSLCAG00010013747)	jam3b (ENSLCAG00010013743)	IGSF9B (ENSLCAG00010013717)	cfap58 (ENSLCAG00010013651)
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b	ENSGT00390000017627.b
Greater amberjack	MODERN SPECIES	39	acer3 (ENSSDUG00000019880)	serpinh1a (ENSSDUG00000019915)	GDPD5 (ENSSDUG00000019937)	samsn1b (ENSSDUG00000019956)	ENSSDUG00000019994	usp25 (ENSSDUG00000020007)	WSCD1 (ENSSDUG00000020105)	bhlha9 (ENSSDUG00000020126)	ENSSDUG00000020134	micu2 (ENSSDUG00000020164)	irf2bp1 (ENSSDUG00000020191)	hnrnpl (ENSSDUG00000020195)	slc8a2a (ENSSDUG00000020230)	ENSSDUG00000020256	nccrp1 (ENSSDUG00000020262)	ckma (ENSSDUG00000020286) ##22	MARK4 (ENSSDUG00000020304)	ENSSDUG00000020373	ppp1r14aa (ENSSDUG00000020380)	dlb (ENSSDUG00000020393)	zgc:153990 (ENSSDUG00000020418)	capns1b (ENSSDUG00000020449)	nova1 (ENSSDUG00000020704)	kptn (ENSSDUG00000020717)	crx (ENSSDUG00000020738)	ENSSDUG00000020749	ARHGAP32 (ENSSDUG00000020769)	vps26bl (ENSSDUG00000020846)	jam3b (ENSSDUG00000020863)	IGSF9B (ENSSDUG00000020875)	cfap58 (ENSSDUG00000020935)
Yellowtail amberjack	MODERN SPECIES	2969	ENSSLDG00000005729	acer3 (ENSSLDG00000005752)	serpinh1a (ENSSLDG00000005778)	GDPD5 (ENSSLDG00000005887)	samsn1b (ENSSLDG00000005945)	ENSSLDG00000005984	usp25 (ENSSLDG00000006019)	WSCD1 (ENSSLDG00000006142)	bhlha9 (ENSSLDG00000006158)	ENSSLDG00000006178	micu2 (ENSSLDG00000006198)	irf2bp1 (ENSSLDG00000006215)	hnrnpl (ENSSLDG00000006243)	slc8a2a (ENSSLDG00000006321)	nccrp1 (ENSSLDG00000006363)	ckma (ENSSLDG00000006400) ##22	MARK4 (ENSSLDG00000006466)	ENSSLDG00000006576	ppp1r14aa (ENSSLDG00000006603)	dlb (ENSSLDG00000006620)	zgc:153990 (ENSSLDG00000006655)	capns1b (ENSSLDG00000006668)	nova1 (ENSSLDG00000006713)	kptn (ENSSLDG00000006751)	crx (ENSSLDG00000006771)	ENSSLDG00000006786	ARHGAP32 (ENSSLDG00000006831)	vps26bl (ENSSLDG00000006920)	jam3b (ENSSLDG00000006956)
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000021181	ENSMAMG00000026214	ENSMAMG00000021196	ENSMAMG00000021199	ENSMAMG00000027997	ENSMAMG00000021204	ENSMAMG00000021209	ENSMAMG00000021211	ENSMAMG00000021216	ENSMAMG00000021219	ENSMAMG00000021224	ENSMAMG00000021231	hnrnpl (ENSMAMG00000021232)	slc8a2a (ENSMAMG00000021235)	nccrp1 (ENSMAMG00000021240)	ckma (ENSMAMG00000028699) ##22	ENSMAMG00000021246	ENSMAMG00000021253	ENSMAMG00000021259	ppp1r14aa (ENSMAMG00000021263)	dlb (ENSMAMG00000021264)	zgc:153990 (ENSMAMG00000021269)	capns1a (ENSMAMG00000026815)	nova1 (ENSMAMG00000021272)	ENSMAMG00000021274	ENSMAMG00000021282	ENSMAMG00000012684	VPS26B (ENSMAMG00000000497)	ENSMAMG00000000532	IGSF9B (ENSMAMG00000000543)	ENSMAMG00000000624
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i
Climbing perch	MODERN SPECIES	5	acer3 (ENSATEG00000000727)	serpinh1a (ENSATEG00000000702)	ENSATEG00000000697	samsn1b (ENSATEG00000000688)	ENSATEG00000000676	usp25 (ENSATEG00000000570)	ENSATEG00000000444	bhlha9 (ENSATEG00000026340)	ENSATEG00000000200	ENSATEG00000000150	ENSATEG00000029648	hnrnpl (ENSATEG00000000129)	slc8a2a (ENSATEG00000000055)	nccrp1 (ENSATEG00000017793)	ENSATEG00000017784	ckma (ENSATEG00000017761) ##22	ENSATEG00000017713	ENSATEG00000017678	ppp1r14aa (ENSATEG00000025902)	dlb (ENSATEG00000017617)	zgc:153990 (ENSATEG00000017609)	capns1a (ENSATEG00000017593)	nova1 (ENSATEG00000025682)	ENSATEG00000017505	ENSATEG00000017467	ENSATEG00000017457	ENSATEG00000017355	VPS26B (ENSATEG00000025542)	ENSATEG00000026696	IGSF9B (ENSATEG00000017250)	ENSATEG00000017054
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000016308	acer3 (ENSBSLG00000016310)	serpinh1a (ENSBSLG00000016314)	GDPD5 (ENSBSLG00000016320)	samsn1b (ENSBSLG00000016338)	NRIP1 (ENSBSLG00000016341)	usp25 (ENSBSLG00000016375)	ENSBSLG00000018630	bhlha9 (ENSBSLG00000018632)	ENSBSLG00000018637	micu2 (ENSBSLG00000018675)	irf2bp1 (ENSBSLG00000018678)	hnrnpl (ENSBSLG00000018681)	slc8a2a (ENSBSLG00000018694)	nccrp1 (ENSBSLG00000018701)	ckma (ENSBSLG00000018709) ##22	ENSBSLG00000018729	MARK4 (ENSBSLG00000018869)	EXOC3L2 (ENSBSLG00000019503)	ppp1r14aa (ENSBSLG00000019532)	dlb (ENSBSLG00000019539)	zgc:153990 (ENSBSLG00000019557)	capns1b (ENSBSLG00000019569)	nova1 (ENSBSLG00000019582)	kptn (ENSBSLG00000019606)	crx (ENSBSLG00000019718)	ENSBSLG00000019725	ARHGAP32 (ENSBSLG00000019748)	vps26bl (ENSBSLG00000020325)	jam3b (ENSBSLG00000020340)	IGSF9B (ENSBSLG00000002382)
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.r.a ##22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003165	ENSTNIG00000003166	ENSTNIG00000019480	MMP11 (ENSTNIG00000007106)	prrc1 (ENSTNIG00000007107)	ENSTNIG00000007108	SLC27A3 (ENSTNIG00000003704)	psmb10 (ENSTNIG00000003705)	selenoh (ENSTNIG00000003706)	YTHDC2 (ENSTNIG00000003707)	ENSTNIG00000003708	ENSTNIG00000003709	dscama (ENSTNIG00000006761)	ENSTNIG00000000980	ENSTNIG00000006760	ckma (ENSTNIG00000006759) ##22	ENSTNIG00000001462	ENSTNIG00000002825	ENSTNIG00000000007	ATP2C1 (ENSTNIG00000005396)	aldh5a1 (ENSTNIG00000005395)	ENSTNIG00000001948	DENND4B (ENSTNIG00000005394)	SLC39A1 (ENSTNIG00000005393)	NPR2 (ENSTNIG00000006188)	dek (ENSTNIG00000001004)	ENSTNIG00000006187	ENSTNIG00000006186	plin6 (ENSTNIG00000006185)	ENSTNIG00000006184	nudt17 (ENSTNIG00000006183)
Fugu	MODERN SPECIES	6	ENSTRUG00000027942	acer3 (ENSTRUG00000022027)	ENSTRUG00000027304	ENSTRUG00000031529	ENSTRUG00000028851	GDPD5 (ENSTRUG00000003607)	ENSTRUG00000027101	usp25 (ENSTRUG00000000019)	slc8a2a (ENSTRUG00000000015)	ENSTRUG00000030190	irf2bp1 (ENSTRUG00000000014)	micu2 (ENSTRUG00000000009)	ENSTRUG00000032510	ENSTRUG00000001066	ENSTRUG00000021532	ckma (ENSTRUG00000001749) ##22	ENSTRUG00000001995	ENSTRUG00000002338	GLB1L2 (ENSTRUG00000002407)	ei24 (ENSTRUG00000004404)	stt3a (ENSTRUG00000004771)	ENSTRUG00000022614	thap12a (ENSTRUG00000005307)	ENSTRUG00000005439	ENSTRUG00000029300	ENSTRUG00000008094	ENSTRUG00000027089	wnt11 (ENSTRUG00000001530)	uvrag (ENSTRUG00000003859)	ENSTRUG00000029802	ENSTRUG00000022613
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Ballan wrasse	MODERN SPECIES	24														slc8a2a (ENSLBEG00000028508)	nccrp1 (ENSLBEG00000028514)	ckma (ENSLBEG00000028518) ##22	MARK4 (ENSLBEG00000028528)	ENSLBEG00000028535	ppp1r14aa (ENSLBEG00000028536)	dlb (ENSLBEG00000028537)	zgc:153990 (ENSLBEG00000028539)	capns1b (ENSLBEG00000028540)	nova1 (ENSLBEG00000028542)	kptn (ENSLBEG00000028544)	crx (ENSLBEG00000028547)	ENSLBEG00000028548	ENSLBEG00000028549	ARHGAP32 (ENSLBEG00000028551)	vps26bl (ENSLBEG00000028557)	jam3b (ENSLBEG00000028559)	IGSF9B (ENSLBEG00000028562)
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Perciformes	ANCESTRAL SPECIES	25	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00390000000083.b	ENSGT00940000159985	ENSGT00390000002960.d	ENSGT00390000015123	ENSGT00390000009588	ENSGT00390000006659	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Perciformes_a	ANCESTRAL SPECIES	26	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00390000000083.b	ENSGT00940000159985	ENSGT00390000002960.d	ENSGT01030000235478	ENSGT00390000009588	ENSGT00390000006659	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Channel bull blenny	MODERN SPECIES	5	usp25 (ENSCGOG00000023861)	WSCD1 (ENSCGOG00000023825)	bhlha9 (ENSCGOG00000023823)	riox2 (ENSCGOG00000023818)	ENSCGOG00000023815	HLCS (ENSCGOG00000023812)	ENSCGOG00000023805	ska2 (ENSCGOG00000023803)	tiprl (ENSCGOG00000023800)	ENSCGOG00000023790	micu2 (ENSCGOG00000023783)	irf2bp1 (ENSCGOG00000023781)	hnrnpl (ENSCGOG00000023768)	slc8a2a (ENSCGOG00000023761)	nccrp1 (ENSCGOG00000023753)	ckma (ENSCGOG00000023727) ##22	MARK4 (ENSCGOG00000023623)	ENSCGOG00000023592	ppp1r14aa (ENSCGOG00000023589)	dlb (ENSCGOG00000023588)	zgc:153990 (ENSCGOG00000023587)	capns1b (ENSCGOG00000023564)	nova1 (ENSCGOG00000023557)	kptn (ENSCGOG00000023528)	crx (ENSCGOG00000023527)	h3f3c (ENSCGOG00000023506)	ARHGAP32 (ENSCGOG00000023196)	vps26bl (ENSCGOG00000023160)	jam3b (ENSCGOG00000023149)	IGSF9B (ENSCGOG00000023146)	ENSCGOG00000023142
Pike perch	MODERN SPECIES	25	WSCD1 (ENSSLUG00000011446)	bhlha9 (ENSSLUG00000011439)	riox2 (ENSSLUG00000011429)	ENSSLUG00000011414	HLCS (ENSSLUG00000011406)	ENSSLUG00000011394	ska2 (ENSSLUG00000011389)	tiprl (ENSSLUG00000011384)	ENSSLUG00000011373	micu2 (ENSSLUG00000011366)	irf2bp1 (ENSSLUG00000011361)	hnrnpl (ENSSLUG00000011278)	slc8a2a (ENSSLUG00000011208)	nccrp1 (ENSSLUG00000011197)	ENSSLUG00000011192	ckma (ENSSLUG00000011167) ##22	MARK4 (ENSSLUG00000010828)	ENSSLUG00000010790	ppp1r14aa (ENSSLUG00000010783)	dlb (ENSSLUG00000010711)	zgc:153990 (ENSSLUG00000010699)	capns1b (ENSSLUG00000010645)	nova1 (ENSSLUG00000010622)	kptn (ENSSLUG00000010558)	crx (ENSSLUG00000010543)	ENSSLUG00000010540	vps26bl (ENSSLUG00000010523)	jam3b (ENSSLUG00000010511)	IGSF9B (ENSSLUG00000010484)	cfap58 (ENSSLUG00000010462)	fez1 (ENSSLUG00000010446)
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00390000000083.b	ENSGT00940000159985	ENSGT00390000002960.d	ENSGT01030000235478	ENSGT00390000009588	ENSGT00390000006659	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.a.eb	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT01030000234626.E
Lumpfish	MODERN SPECIES	5	smfn (ENSCLMG00005004846)	AMOT (ENSCLMG00005004840)	ENSCLMG00005004784	ENSCLMG00005004755	ENSCLMG00005004684	ENSCLMG00005004661	ENSCLMG00005004653	ska2 (ENSCLMG00005004637)	tiprl (ENSCLMG00005004618)	ENSCLMG00005004552	micu2 (ENSCLMG00005004524)	irf2bp1 (ENSCLMG00005004511)	hnrnpl (ENSCLMG00005004128)	slc8a2a (ENSCLMG00005003969)	nccrp1 (ENSCLMG00005003964)	ckma (ENSCLMG00005003944) ##22	MARK4 (ENSCLMG00005003941)	MX1 (ENSCLMG00005003939)	ENSCLMG00005003937	ppp1r14aa (ENSCLMG00005003935)	dlb (ENSCLMG00005003913)	zgc:153990 (ENSCLMG00005003910)	capns1b (ENSCLMG00005003909)	nova1 (ENSCLMG00005003905)	kptn (ENSCLMG00005003862)	crx (ENSCLMG00005003857)	ENSCLMG00005003854	ARHGAP32 (ENSCLMG00005002088)	VPS26B (ENSCLMG00005002038)	jam3b (ENSCLMG00005001995)	IGSF9B (ENSCLMG00005001992)
Stickleback	MODERN SPECIES	7	serpinh1a (ENSGACG00000020152)	GDPD5 (ENSGACG00000020153)	NRIP1 (ENSGACG00000020154)	usp25 (ENSGACG00000020155)	WSCD1 (ENSGACG00000020156)	ENSGACG00000020158	HLCS (ENSGACG00000020159)	ska2 (ENSGACG00000020160)	tiprl (ENSGACG00000020161)	ENSGACG00000020162	micu2 (ENSGACG00000020163)	irf2bp1 (ENSGACG00000020164)	hnrnpl (ENSGACG00000020165)	slc8a2a (ENSGACG00000020166)	nccrp1 (ENSGACG00000020167)	ckma (ENSGACG00000020168) ##22	MARK4 (ENSGACG00000020169)	ENSGACG00000020170	ppp1r14aa (ENSGACG00000020171)	dlb (ENSGACG00000020172)	zgc:153990 (ENSGACG00000020173)	capns1a (ENSGACG00000020174)	nova1 (ENSGACG00000020175)	kptn (ENSGACG00000020176)	ENSGACG00000020177	crx (ENSGACG00000020178)	ENSGACG00000020179	ARHGAP32 (ENSGACG00000020180)	ENSGACG00000020181	vps26bl (ENSGACG00000020182)	jam3b (ENSGACG00000020183)
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Gilthead seabream	MODERN SPECIES	4	acer3 (ENSSAUG00010014699)	serpinh1a (ENSSAUG00010014702)	GDPD5 (ENSSAUG00010014706)	ENSSAUG00010014712	ENSSAUG00010014715	usp25 (ENSSAUG00010014776)	WSCD1 (ENSSAUG00010017144)	bhlha9 (ENSSAUG00010017148)	ENSSAUG00010017151	micu2 (ENSSAUG00010017159)	irf2bp1 (ENSSAUG00010017164)	hnrnpl (ENSSAUG00010017179)	slc8a2a (ENSSAUG00010017299)	nccrp1 (ENSSAUG00010017301)	crx (ENSSAUG00010017303)	ckma (ENSSAUG00010017305) ##22	MARK4 (ENSSAUG00010017309)	ENSSAUG00010017382	ppp1r14aa (ENSSAUG00010017384)	dlb (ENSSAUG00010017385)	zgc:153990 (ENSSAUG00010017387)	capns1b (ENSSAUG00010017388)	nova1 (ENSSAUG00010017389)	kptn (ENSSAUG00010001463)	ENSSAUG00010001743	ARHGAP32 (ENSSAUG00010001872)	vps26bl (ENSSAUG00010003823)	IGSF9B (ENSSAUG00010003844)	cfap58 (ENSSAUG00010003923)	fez1 (ENSSAUG00010003936)	esama (ENSSAUG00010003944)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Large yellow croaker	MODERN SPECIES	493	ENSLCRG00005006278	acer3 (ENSLCRG00005006276)	serpinh1a (ENSLCRG00005006275)	GDPD5 (ENSLCRG00005006267)	samsn1b (ENSLCRG00005006263)	ENSLCRG00005006262	usp25 (ENSLCRG00005003391)	WSCD1 (ENSLCRG00005003321)	bhlha9 (ENSLCRG00005003319)	ENSLCRG00005003312	micu2 (ENSLCRG00005003306)	irf2bp1 (ENSLCRG00005003304)	hnrnpl (ENSLCRG00005003189)	slc8a2a (ENSLCRG00005003165)	nccrp1 (ENSLCRG00005003153)	ckma (ENSLCRG00005003148) ##22	ENSLCRG00005001422	ENSLCRG00005001403	ppp1r14aa (ENSLCRG00005001397)	dlb (ENSLCRG00005022699)	zgc:153990 (ENSLCRG00005022698)	capns1b (ENSLCRG00005022696)	nova1 (ENSLCRG00005022694)	kptn (ENSLCRG00005022678)	crx (ENSLCRG00005022677)	ENSLCRG00005022676	ARHGAP32 (ENSLCRG00005022640)	vps26bl (ENSLCRG00005022631)	jam3b (ENSLCRG00005022629)	IGSF9B (ENSLCRG00005022622)	cfap58 (ENSLCRG00005022621)
European seabass	MODERN SPECIES	4	mmp13a (ENSDLAG00005008130)	ENSDLAG00005008108	serpinh1a (ENSDLAG00005008100)	ENSDLAG00005007979	samsn1b (ENSDLAG00005007939)	ENSDLAG00005007934	usp25 (ENSDLAG00005007491)	ENSDLAG00005007446	bhlha9 (ENSDLAG00005007435)	ENSDLAG00005007297	ENSDLAG00005007277	ENSDLAG00005033665	hnrnpl (ENSDLAG00005007069)	slc8a2a (ENSDLAG00005006825)	nccrp1 (ENSDLAG00005027414)	ckma (ENSDLAG00005006316) ##22	ENSDLAG00005006717	ENSDLAG00005027249	ENSDLAG00005006657	ppp1r14aa (ENSDLAG00005006624)	dlb (ENSDLAG00005006620)	zgc:153990 (ENSDLAG00005006619)	nova1 (ENSDLAG00005006248)	ENSDLAG00005006029	ENSDLAG00005029980	ENSDLAG00005005990	VPS26B (ENSDLAG00005005937)	ENSDLAG00005028459	ENSDLAG00005005915	IGSF9B (ENSDLAG00005005361)	ENSDLAG00005005165
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Aplocheiloidei	ANCESTRAL SPECIES	182																ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a.hb.b	ENSGT00940000156937.a.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a
Mangrove rivulus	MODERN SPECIES	495															ENSKMAG00000008561	ckma (ENSKMAG00000008581) ##22	MARK4 (ENSKMAG00000008613)
Turquoise killifish	MODERN SPECIES	1620	ENSNFUG00015008658	GDPD5 (ENSNFUG00015008663)	WSCD1 (ENSNFUG00015008667)	ENSNFUG00015008671	usp25 (ENSNFUG00015008710)	ENSNFUG00015009276	ENSNFUG00015009281	NCCRP1 (ENSNFUG00015009292)	slc8a2a (ENSNFUG00015009315)	Nfu_g_1_017124 (ENSNFUG00015009426)	Nfu_g_1_017135 (ENSNFUG00015009563)	EFHA1 (ENSNFUG00015009569)	ENSNFUG00015009584	bhlha9 (ENSNFUG00015009595)	zgc:153990 (ENSNFUG00015009613)	ckma (ENSNFUG00015009641) ##22	MARK4 (ENSNFUG00015010697)	PPP1R14AA (ENSNFUG00015010762)	dlb (ENSNFUG00015010772)	CAPNS1A (ENSNFUG00015010782)	nova1 (ENSNFUG00015010809)	kptn (ENSNFUG00015010864)	crx (ENSNFUG00015010903)	ENSNFUG00015010917	ARHGAP32 (ENSNFUG00015011007)	ENSNFUG00015012220	jam3b (ENSNFUG00015012223)	IGSF9B (ENSNFUG00015012255)	smfn (ENSNFUG00015012356)	AMOT (ENSNFUG00015013083)	ENSNFUG00015013094
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
NAME_4	ANCESTRAL SPECIES	148				ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b.f	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Mummichog	MODERN SPECIES	2248		GDPD5 (ENSFHEG00000005231)	samsn1b (ENSFHEG00000005210)	ENSFHEG00000005132	usp25 (ENSFHEG00000005107)	ENSFHEG00000004945	ENSFHEG00000004935	bhlha9 (ENSFHEG00000004931)	ENSFHEG00000004918	micu2 (ENSFHEG00000004892)	irf2bp1 (ENSFHEG00000004882)	irf2bp1 (ENSFHEG00000004879)	hnrnpl (ENSFHEG00000004874)	slc8a2a (ENSFHEG00000004856)	nccrp1 (ENSFHEG00000004820)	ckma (ENSFHEG00000004795) ##22	ENSFHEG00000004760	ENSFHEG00000004721	ENSFHEG00000000723	dlb (ENSFHEG00000004692)	zgc:153990 (ENSFHEG00000004655)	capns1b (ENSFHEG00000004645)	nova1 (ENSFHEG00000004626)	kptn (ENSFHEG00000004605)	crx (ENSFHEG00000004555)	ENSFHEG00000004538	ARHGAP32 (ENSFHEG00000000117)	vps26bl (ENSFHEG00000004492)	jam3b (ENSFHEG00000000616)	IGSF9B (ENSFHEG00000004461)	cfap58 (ENSFHEG00000004411)
Sheepshead minnow	MODERN SPECIES	485					ENSCVAG00000007073	ENSCVAG00000007051	ENSCVAG00000007039	mstna (ENSCVAG00000007019)	stat1a (ENSCVAG00000006312)	glsa (ENSCVAG00000006160)	nab1a (ENSCVAG00000006121)	mfsd6a (ENSCVAG00000006105)	ENSCVAG00000006079	ahr1b (ENSCVAG00000006075)	ENSCVAG00000006056	ckma (ENSCVAG00000006048) ##22	ENSCVAG00000006029	MARK4 (ENSCVAG00000006024)	ENSCVAG00000005989	ppp1r14aa (ENSCVAG00000005978)	dlb (ENSCVAG00000000172)	zgc:153990 (ENSCVAG00000005929)	capns1a (ENSCVAG00000005926)
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000159193	ENSGT00940000155457.a.a.d	ENSGT00390000013593	ENSGT00940000157231.a.a	ENSGT00390000017627.b	ENSGT00530000063534.b	ENSGT00940000155900.i	ENSGT00940000156937.a.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962
NAME_6	ANCESTRAL SPECIES	101	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000159193	ENSGT00940000155457.a.a.d	ENSGT00390000013593	ENSGT00940000157231.a.a	ENSGT00390000017627.b	ENSGT00530000063534.b	ENSGT00940000155900.i	ENSGT00940000156937.a.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962
Sailfin molly	MODERN SPECIES	277											ARHGAP32 (ENSPLAG00000015060)	ENSPLAG00000015073	crx (ENSPLAG00000015131)	slc8a2a (ENSPLAG00000015157)	nccrp1 (ENSPLAG00000015175)	ckma (ENSPLAG00000015197) ##22	MARK4 (ENSPLAG00000015238)	ENSPLAG00000015256	ppp1r14aa (ENSPLAG00000015261)	dlb (ENSPLAG00000015280)	zgc:153990 (ENSPLAG00000015288)	capns1b (ENSPLAG00000015296)	nova1 (ENSPLAG00000015391)	kptn (ENSPLAG00000015407)	hnrnpl (ENSPLAG00000015433)	irf2bp1 (ENSPLAG00000015439)	micu2 (ENSPLAG00000015446)	ENSPLAG00000015460	bhlha9 (ENSPLAG00000015472)
Amazon molly	MODERN SPECIES	330	tmem218 (ENSPFOG00000018589)	ENSPFOG00000018579	robo3 (ENSPFOG00000018507)	MSANTD2 (ENSPFOG00000022034)	esama (ENSPFOG00000018461)	fez1 (ENSPFOG00000018445)	cfap58 (ENSPFOG00000018403)	IGSF9B (ENSPFOG00000018354)	jam3b (ENSPFOG00000018337)	vps26bl (ENSPFOG00000018330)	ARHGAP32 (ENSPFOG00000018284)	ENSPFOG00000018274	crx (ENSPFOG00000018273)	slc8a2a (ENSPFOG00000018239)	nccrp1 (ENSPFOG00000018217)	ckma (ENSPFOG00000018207) ##22	MARK4 (ENSPFOG00000018109)	ENSPFOG00000018071	ppp1r14aa (ENSPFOG00000018063)	dlb (ENSPFOG00000018044)	zgc:153990 (ENSPFOG00000018038)	capns1b (ENSPFOG00000018021)	nova1 (ENSPFOG00000018009)	kptn (ENSPFOG00000017987)	hnrnpl (ENSPFOG00000017949)	irf2bp1 (ENSPFOG00000020807)	micu2 (ENSPFOG00000017927)	ENSPFOG00000017901	bhlha9 (ENSPFOG00000017896)	WSCD1 (ENSPFOG00000017879)	usp25 (ENSPFOG00000017727)
Guppy	MODERN SPECIES	444	ENSPREG00000010509	ENSPREG00000010537	acer3 (ENSPREG00000010558)	serpinh1a (ENSPREG00000010587)	GDPD5 (ENSPREG00000010612)	samsn1b (ENSPREG00000010675)	ENSPREG00000010684	usp25 (ENSPREG00000010697)	WSCD1 (ENSPREG00000010731)	vps26bl (ENSPREG00000010746)	ARHGAP32 (ENSPREG00000010772)	ENSPREG00000010865	crx (ENSPREG00000010876)	slc8a2a (ENSPREG00000010899)	nccrp1 (ENSPREG00000010962)	ckma (ENSPREG00000011025) ##22	MARK4 (ENSPREG00000011134)	ENSPREG00000011202	ppp1r14aa (ENSPREG00000011215)	dlb (ENSPREG00000011227)	zgc:153990 (ENSPREG00000011254)	capns1b (ENSPREG00000011293)	nova1 (ENSPREG00000011614)	kptn (ENSPREG00000011640)	hnrnpl (ENSPREG00000011662)	irf2bp1 (ENSPREG00000011689)	micu2 (ENSPREG00000011698)	ENSPREG00000011736	bhlha9 (ENSPREG00000011763)	ENSPREG00000011772	slc8a4a (ENSPREG00000011792)
Platyfish	MODERN SPECIES	2	acer3 (ENSXMAG00000014002)	serpinh1a (ENSXMAG00000014013)	GDPD5 (ENSXMAG00000014022)	ENSXMAG00000029062	ENSXMAG00000028626	usp25 (ENSXMAG00000014035)	WSCD1 (ENSXMAG00000014061)	bhlha9 (ENSXMAG00000026692)	ENSXMAG00000018695	ENSXMAG00000024550	micu2 (ENSXMAG00000018701)	irf2bp1 (ENSXMAG00000019430)	hnrnpl (ENSXMAG00000019070)	slc8a2a (ENSXMAG00000017941)	nccrp1 (ENSXMAG00000017936)	ckma (ENSXMAG00000017927) ##22	MARK4 (ENSXMAG00000017913)	ENSXMAG00000017905	ppp1r14aa (ENSXMAG00000017904)	dlb (ENSXMAG00000017891)	zgc:153990 (ENSXMAG00000023349)	capns1b (ENSXMAG00000017885)	nova1 (ENSXMAG00000017880)	kptn (ENSXMAG00000017878)	ENSXMAG00000023201	stoml3b (ENSXMAG00000017867)	ENSXMAG00000017861	vps36 (ENSXMAG00000025016)	ENSXMAG00000017831	fgl1b (ENSXMAG00000017825)	tpte (ENSXMAG00000017783)
Oryzias	ANCESTRAL SPECIES	31	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263514.A.f.x.b.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT00940000154678.a.b	ENSGT00940000159690.b	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a
Oryzias_b	ANCESTRAL SPECIES	62	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263514.A.f.x.b.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT00940000154678.a.b	ENSGT00940000159690.b	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a
Javanese ricefish	MODERN SPECIES	5	ENSOJAG00000008711	ins (ENSOJAG00000008767)	ENSOJAG00000008915	ENSOJAG00000008952	ENSOJAG00000008972	GALNT10 (ENSOJAG00000009039)	ENSOJAG00000009484	bhlha9 (ENSOJAG00000009523)	ENSOJAG00000009547	micu2 (ENSOJAG00000009563)	irf2bp1 (ENSOJAG00000009571)	hnrnpl (ENSOJAG00000009629)	slc8a2a (ENSOJAG00000010019)	nccrp1 (ENSOJAG00000010104)	ENSOJAG00000010110	ckma (ENSOJAG00000010121) ##22	ENSOJAG00000010224	MARK4 (ENSOJAG00000010267)	ENSOJAG00000010571	ppp1r14aa (ENSOJAG00000010676)	dlb (ENSOJAG00000010685)	zgc:153990 (ENSOJAG00000010696)	capns1b (ENSOJAG00000010708)	nova1 (ENSOJAG00000010732)	kptn (ENSOJAG00000010789)	crx (ENSOJAG00000010856)	ENSOJAG00000010869	ARHGAP32 (ENSOJAG00000010905)	ENSOJAG00000011360	IGSF9B (ENSOJAG00000011428)	jam3b (ENSOJAG00000011598)
Indian medaka	MODERN SPECIES	39	ENSOMEG00000016656	ENSOMEG00000016594	ENSOMEG00000016588	dscama (ENSOMEG00000016538)	ENSOMEG00000000408	ENSOMEG00000016284	usp25 (ENSOMEG00000016235)	WSCD1 (ENSOMEG00000016108)	bhlha9 (ENSOMEG00000016093)	ENSOMEG00000016078	micu2 (ENSOMEG00000016017)	irf2bp1 (ENSOMEG00000015992)	hnrnpl (ENSOMEG00000015965)	slc8a2a (ENSOMEG00000015888)	nccrp1 (ENSOMEG00000015782)	ckma (ENSOMEG00000015762) ##22	ENSOMEG00000015743	MARK4 (ENSOMEG00000015709)	ENSOMEG00000015621	ppp1r14aa (ENSOMEG00000015592)	dlb (ENSOMEG00000015582)	zgc:153990 (ENSOMEG00000015554)	capns1b (ENSOMEG00000015522)	nova1 (ENSOMEG00000015479)	kptn (ENSOMEG00000015452)	ENSOMEG00000015430
Oryzias_a	ANCESTRAL SPECIES	70	ENSGT01060000248528.b	ENSGT01020000230360.c.b.a.a.a.a.a.d	ENSGT00950000183089.c.a.k.b.b.i	ENSGT00940000154678.a.b	ENSGT00940000159690.b	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.b.a.b	ENSGT01100000263504.a.b.a.a.ib	ENSGT00940000154313.c.a	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b	ENSGT00390000017627.b
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000000693	ENSORLG00000000680	dscama (ENSORLG00000000669)	ENSORLG00000000623	ENSORLG00000000586	usp25 (ENSORLG00000000577)	ENSORLG00000025694	WSCD1 (ENSORLG00000000526)	bhlha9 (ENSORLG00000022043)	ENSORLG00000000510	micu2 (ENSORLG00000028459)	irf2bp1 (ENSORLG00000030526)	hnrnpl (ENSORLG00000000486)	slc8a2a (ENSORLG00000000474)	nccrp1 (ENSORLG00000000459)	ckma (ENSORLG00000000449) ##22	MARK4 (ENSORLG00000000445)	ENSORLG00000025181	ENSORLG00000023651	ppp1r14aa (ENSORLG00000000395)	ENSORLG00000000382	dlb (ENSORLG00000000378)	zgc:153990 (ENSORLG00000023232)	capns1b (ENSORLG00000000369)	nova1 (ENSORLG00000000350)	kptn (ENSORLG00000000337)	ENSORLG00000000324	h3f3c (ENSORLG00000026243)	ENSORLG00000028706	ARHGAP32 (ENSORLG00000000312)	jam3b (ENSORLG00000027029)
Chinese medaka	MODERN SPECIES	604													nccrp1 (ENSOSIG00000011379)	zgc:171566 (ENSOSIG00000011378)	ENSOSIG00000011377	ckma (ENSOSIG00000011370) ##22	MARK4 (ENSOSIG00000011351)	ENSOSIG00000011345
Ovalentaria_B	ANCESTRAL SPECIES	26	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Pseudocrenilabrinae	ANCESTRAL SPECIES	29	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	39	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Haplochromini	ANCESTRAL SPECIES	36	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a.n.b	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Burton s mouthbrooder	MODERN SPECIES	464	ENSHBUG00000007463	acer3 (ENSHBUG00000006751)	serpinh1a (ENSHBUG00000006698)	GDPD5 (ENSHBUG00000006664)	samsn1b (ENSHBUG00000006652)	ENSHBUG00000006631	usp25 (ENSHBUG00000006607)	WSCD1 (ENSHBUG00000006371)	bhlha9 (ENSHBUG00000006360)	ENSHBUG00000006350	micu2 (ENSHBUG00000006336)	irf2bp1 (ENSHBUG00000006281)	hnrnpl (ENSHBUG00000006269)	slc8a2a (ENSHBUG00000006215)	nccrp1 (ENSHBUG00000006154)	ckma (ENSHBUG00000006144) ##22	ENSHBUG00000006120	MARK4 (ENSHBUG00000006094)	ENSHBUG00000005970	ppp1r14aa (ENSHBUG00000005946)	dlb (ENSHBUG00000005938)	zgc:153990 (ENSHBUG00000005892)	capns1b (ENSHBUG00000005884)
Haplochromini_A	ANCESTRAL SPECIES	41	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00980000198690.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000154313.c.a.n.a	ENSGT00940000154313.c.a.n.b	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i
P. nyererei	MODERN SPECIES	392	acer3 (ENSPNYG00000016176)	serpinh1a (ENSPNYG00000016156)	GDPD5 (ENSPNYG00000016092)	samsn1b (ENSPNYG00000016067)	ENSPNYG00000016061	usp25 (ENSPNYG00000015949)	WSCD1 (ENSPNYG00000015892)	bhlha9 (ENSPNYG00000015882)	ENSPNYG00000015839	micu2 (ENSPNYG00000015822)	irf2bp1 (ENSPNYG00000015815)	hnrnpl (ENSPNYG00000015767)	slc8a2a (ENSPNYG00000015720)	nccrp1 (ENSPNYG00000015694)	ENSPNYG00000015687	ckma (ENSPNYG00000015663) ##22	MARK4 (ENSPNYG00000015630)	ENSPNYG00000015613	ppp1r14aa (ENSPNYG00000015601)	dlb (ENSPNYG00000015585)	zgc:153990 (ENSPNYG00000015565)	capns1b (ENSPNYG00000015538)	nova1 (ENSPNYG00000015521)	kptn (ENSPNYG00000015503)	crx (ENSPNYG00000015489)	ENSPNYG00000015474	ARHGAP32 (ENSPNYG00000015329)	vps26bl (ENSPNYG00000015268)	jam3b (ENSPNYG00000015243)	ENSPNYG00000015206	IGSF9B (ENSPNYG00000015152)
Haplochromini_B	ANCESTRAL SPECIES	46	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00980000198690.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000154313.c.a.n.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a.n.b	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a
Eastern happy	MODERN SPECIES	1	h2ax1 (ENSACLG00000004315)	ENSACLG00000004304	ENSACLG00000004293	HSPA8 (ENSACLG00000004224)	bsx (ENSACLG00000004204)	ENSACLG00000004185	ENSACLG00000003773	ENSACLG00000003757	ENSACLG00000003723	micu2 (ENSACLG00000003711)	irf2bp1 (ENSACLG00000003704)	hnrnpl (ENSACLG00000003627)	slc8a2a (ENSACLG00000003573)	nccrp1 (ENSACLG00000003541)	ENSACLG00000003530	ckma (ENSACLG00000003506) ##22	MARK4 (ENSACLG00000003377)	ENSACLG00000003357	ppp1r14aa (ENSACLG00000003348)	dlb (ENSACLG00000003314)	zgc:153990 (ENSACLG00000003052)	capns1b (ENSACLG00000003030)	nova1 (ENSACLG00000003002)	kptn (ENSACLG00000002914)	ENSACLG00000002904	crx (ENSACLG00000002886)	h3f3c (ENSACLG00000002870)	ENSACLG00000002860	ENSACLG00000002837	ENSACLG00000002816	ENSACLG00000002796
Zebra mbuna	MODERN SPECIES	1092	acer3 (ENSMZEG00005023430)	serpinh1a (ENSMZEG00005023428)	GDPD5 (ENSMZEG00005023426)	samsn1b (ENSMZEG00005023423)	ENSMZEG00005023421	usp25 (ENSMZEG00005023407)	WSCD1 (ENSMZEG00005023401)	bhlha9 (ENSMZEG00005023399)	ENSMZEG00005023396	micu2 (ENSMZEG00005023395)	irf2bp1 (ENSMZEG00005023394)	hnrnpl (ENSMZEG00005023388)	slc8a2a (ENSMZEG00005023386)	nccrp1 (ENSMZEG00005023383)	ENSMZEG00005023381	ckma (ENSMZEG00005023380) ##22	MARK4 (ENSMZEG00005023376)	ENSMZEG00005023372	ppp1r14aa (ENSMZEG00005023370)	dlb (ENSMZEG00005023369)	zgc:153990 (ENSMZEG00005023367)	capns1b (ENSMZEG00005023364)	nova1 (ENSMZEG00005023362)	kptn (ENSMZEG00005023357)	crx (ENSMZEG00005023354)	ENSMZEG00005023353	ints2 (ENSMZEG00005023345)	med13a (ENSMZEG00005023335)	rnft1 (ENSMZEG00005023331)	ENSMZEG00005023330	VMP1 (ENSMZEG00005023328)
Lyretail cichlid	MODERN SPECIES	526																ckma (ENSNBRG00000007831) ##22	MARK4 (ENSNBRG00000007855)	ENSNBRG00000007912	ppp1r14aa (ENSNBRG00000007959)	dlb (ENSNBRG00000007979)	zgc:153990 (ENSNBRG00000008000)	capns1b (ENSNBRG00000008033)	nova1 (ENSNBRG00000008100)	kptn (ENSNBRG00000008127)	crx (ENSNBRG00000008158)	ENSNBRG00000008170	ENSNBRG00000008189	ENSNBRG00000008204	VPS26B (ENSNBRG00000008218)	jam3b (ENSNBRG00000008240)
Nile tilapia	MODERN SPECIES	1	acer3 (ENSONIG00000037831)	serpinh1a (ENSONIG00000015878)	GDPD5 (ENSONIG00000015867)	ENSONIG00000015874	ENSONIG00000040889	usp25 (ENSONIG00000015857)	WSCD1 (ENSONIG00000015855)	ENSONIG00000038513	bhlha9 (ENSONIG00000032821)	ENSONIG00000029441	micu2 (ENSONIG00000015851)	irf2bp1 (ENSONIG00000020656)	hnrnpl (ENSONIG00000015848)	slc8a2a (ENSONIG00000015841)	nccrp1 (ENSONIG00000039616)	ckma (ENSONIG00000015836) ##22	MARK4 (ENSONIG00000015826)	ENSONIG00000029399	ENSONIG00000015824	ppp1r14aa (ENSONIG00000015821)	dlb (ENSONIG00000015819)	zgc:153990 (ENSONIG00000015818)	capns1b (ENSONIG00000027340)	ENSONIG00000029570	nova1 (ENSONIG00000015810)	kptn (ENSONIG00000015807)	crx (ENSONIG00000015806)	ENSONIG00000037977	ARHGAP32 (ENSONIG00000015803)	vps26bl (ENSONIG00000030388)	jam3b (ENSONIG00000015796)
Midas cichlid	MODERN SPECIES	155												akt2l (ENSACIG00000018062)	ENSACIG00000018047	slc8a2a (ENSACIG00000018016)	nccrp1 (ENSACIG00000017989)	ckma (ENSACIG00000017971) ##22	MARK4 (ENSACIG00000017934)	ENSACIG00000017915	ppp1r14aa (ENSACIG00000017904)	dlb (ENSACIG00000017888)	zgc:153990 (ENSACIG00000017880)	capns1b (ENSACIG00000017831)	nova1 (ENSACIG00000017818)	kptn (ENSACIG00000017806)	crx (ENSACIG00000017800)	ENSACIG00000017795	ARHGAP32 (ENSACIG00000017763)	vps26bl (ENSACIG00000017742)	jam3b (ENSACIG00000017694)	IGSF9B (ENSACIG00000017662)	ENSACIG00000017650
Pomacentridae	ANCESTRAL SPECIES	42	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155191.a.a.c.b	ENSGT00940000155900.i
Clown anemonefish	MODERN SPECIES	3480															nccrp1 (ENSAOCG00000012106)	ckma (ENSAOCG00000002146) ##22	MARK4 (ENSAOCG00000012183)	ENSAOCG00000012222	ppp1r14aa (ENSAOCG00000012237)	dlb (ENSAOCG00000012257)	zgc:153990 (ENSAOCG00000012281)	GRIN2C (ENSAOCG00000012339)	RBFOX3 (ENSAOCG00000012358)	ENPP7 (ENSAOCG00000012377)	cbx2 (ENSAOCG00000012388)	nog1 (ENSAOCG00000012409)	pctp (ENSAOCG00000012446)	TMEM100 (ENSAOCG00000000766)	MMD (ENSAOCG00000012486)
Orange clownfish	MODERN SPECIES	6	ENSAPEG00000011554	acer3 (ENSAPEG00000011767)	serpinh1a (ENSAPEG00000011784)	GDPD5 (ENSAPEG00000011819)	samsn1b (ENSAPEG00000011851)	ENSAPEG00000011870	usp25 (ENSAPEG00000011877)	WSCD1 (ENSAPEG00000012009)	bhlha9 (ENSAPEG00000012026)	ENSAPEG00000012046	micu2 (ENSAPEG00000012118)	irf2bp1 (ENSAPEG00000012133)	hnrnpl (ENSAPEG00000012139)	slc8a2a (ENSAPEG00000012198)	nccrp1 (ENSAPEG00000012256)	ckma (ENSAPEG00000012285) ##22	MARK4 (ENSAPEG00000012325)	ENSAPEG00000012388	ppp1r14aa (ENSAPEG00000012424)	dlb (ENSAPEG00000012433)	zgc:153990 (ENSAPEG00000012465)	capns1b (ENSAPEG00000012476)	nova1 (ENSAPEG00000012502)	kptn (ENSAPEG00000012526)	crx (ENSAPEG00000012552)	ENSAPEG00000012567	ARHGAP32 (ENSAPEG00000012706)	vps26bl (ENSAPEG00000012970)	jam3b (ENSAPEG00000012994)	ENSAPEG00000013019	ENSAPEG00000013110
Spiny chromis	MODERN SPECIES	587												irf2bp1 (ENSAPOG00000002422)	hnrnpl (ENSAPOG00000002415)	slc8a2a (ENSAPOG00000002401)	nccrp1 (ENSAPOG00000002373)	ckma (ENSAPOG00000002355) ##22	MARK4 (ENSAPOG00000002316)	ENSAPOG00000002258	ppp1r14aa (ENSAPOG00000002244)	dlb (ENSAPOG00000002230)	zgc:153990 (ENSAPOG00000002204)	capns1b (ENSAPOG00000002188)	nova1 (ENSAPOG00000002171)	kptn (ENSAPOG00000000044)	crx (ENSAPOG00000002128)	ENSAPOG00000002114	ARHGAP32 (ENSAPOG00000002093)
Bicolor damselfish	MODERN SPECIES	1438										micu2 (ENSSPAG00000001335)	irf2bp1 (ENSSPAG00000001318)	hnrnpl (ENSSPAG00000001307)	slc8a2a (ENSSPAG00000001261)	nccrp1 (ENSSPAG00000001235)	ENSSPAG00000001221	ckma (ENSSPAG00000001188) ##22	MARK4 (ENSSPAG00000001146)	ENSSPAG00000001138	ppp1r14aa (ENSSPAG00000001123)	dlb (ENSSPAG00000001095)	zgc:153990 (ENSSPAG00000001083)	capns1b (ENSSPAG00000001073)	nova1 (ENSSPAG00000001033)
Acanthomorphata	ANCESTRAL SPECIES	119	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01100000266284	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00940000161512	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B
Cod	MODERN SPECIES	7	ENSGMOG00000007919	ENSGMOG00000007927	ENSGMOG00000007941	ENSGMOG00000007947	ENSGMOG00000029407	hif1al (ENSGMOG00000003074)	ENSGMOG00000013711	pak4 (ENSGMOG00000006194)	ENSGMOG00000031550	ENSGMOG00000024801	sae1 (ENSGMOG00000001497)	ZC3H4 (ENSGMOG00000031441)	zgc:154093 (ENSGMOG00000023571)	ercc2 (ENSGMOG00000004258)	klc3 (ENSGMOG00000007334)	CKM (ENSGMOG00000009605) ##22	ENSGMOG00000009613	ENSGMOG00000025093	ENSGMOG00000000494	SPTBN4 (ENSGMOG00000019018)	blvrb (ENSGMOG00000019058)	ENSGMOG00000032660	kcnk6 (ENSGMOG00000019070)	ENSGMOG00000030129	ENSGMOG00000030523	PLD3 (ENSGMOG00000019115)	ENSGMOG00000030646	foxa3 (ENSGMOG00000023160)	irf2bp1 (ENSGMOG00000019134)	ENSGMOG00000032237	ENSGMOG00000027146
Euacanthomorphacea	ANCESTRAL SPECIES	33	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00940000161512	ENSGT00950000183059.b.b	ENSGT00940000166203
Pinecone sodierfish	MODERN SPECIES	4	foxa3 (ENSMMDG00005017101)	irf2bp1 (ENSMMDG00005017105)	polr1g (ENSMMDG00005017108)	ENSMMDG00005017111	ENSMMDG00005017118	eml2 (ENSMMDG00005017194)	rhbdd1 (ENSMMDG00005019090)	rhbdd1 (ENSMMDG00005019092)	rhbdd1 (ENSMMDG00005019094)	panx1a (ENSMMDG00005019101)	ENSMMDG00005019103	ENSMMDG00005019107	ZC3H4 (ENSMMDG00005019110)	ercc2 (ENSMMDG00005019115)	klc3 (ENSMMDG00005019124)	CKM (ENSMMDG00005019131) ##22	ENSMMDG00005019141	MARK4 (ENSMMDG00005019231)	TRPV2 (ENSMMDG00005021695)	FAM222B (ENSMMDG00005021720)	flot2b (ENSMMDG00005021731)	ostn (ENSMMDG00005021960)	ENSMMDG00005021962	IL1RAP (ENSMMDG00005021964)	IWS1 (ENSMMDG00005021970)	wdr74 (ENSMMDG00005021977)	zgc:162872 (ENSMMDG00005021981)	ilkap (ENSMMDG00005021984)	ENSMMDG00005021991	ENSMMDG00005022001	SHKBP1 (ENSMMDG00005022143)
Percomorphaceae	ANCESTRAL SPECIES	44	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203
Tiger tail seahorse	MODERN SPECIES	421	ENSHCOG00000015783	ENSHCOG00000015764	ENSHCOG00000015740	ENSHCOG00000015724	ENSHCOG00000015677	txndc17 (ENSHCOG00000015671)	nxn (ENSHCOG00000015667)	glod4 (ENSHCOG00000015657)	mrm3a (ENSHCOG00000015618)	BLTP2 (ENSHCOG00000015606)	sae1 (ENSHCOG00000015534)	ZC3H4 (ENSHCOG00000015498)	zgc:154093 (ENSHCOG00000015413)	ercc2 (ENSHCOG00000015395)	klc3 (ENSHCOG00000015361)	CKM (ENSHCOG00000015336) ##22	ENSHCOG00000015305	MARK4 (ENSHCOG00000015293)	ENSHCOG00000015246	ENSHCOG00000015241	ENSHCOG00000015237	ENSHCOG00000015231	SPTBN4 (ENSHCOG00000015225)	ENSHCOG00000015175	blvrb (ENSHCOG00000015157)	zgc:152863 (ENSHCOG00000015147)	ENSHCOG00000015146	hif1al (ENSHCOG00000015137)	DMWD (ENSHCOG00000015132)	ENSHCOG00000015122	ENSHCOG00000015108
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Aplocheiloidei	ANCESTRAL SPECIES	84	ENSGT00390000009497.b	ENSGT00530000064411.a	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Mangrove rivulus	MODERN SPECIES	301										ccdc9 (ENSKMAG00000021383)	sae1 (ENSKMAG00000021368)	ZC3H4 (ENSKMAG00000021348)	zgc:154093 (ENSKMAG00000021338)	ercc2 (ENSKMAG00000021325)	klc3 (ENSKMAG00000021294)	ckma (ENSKMAG00000021273) ##22	MARK4 (ENSKMAG00000021234)	ENSKMAG00000021211	ENSKMAG00000021203	ENSKMAG00000021194	ENSKMAG00000021184	SPTBN4 (ENSKMAG00000021095)	blvrb (ENSKMAG00000021061)	ENSKMAG00000021055	kcnk6 (ENSKMAG00000021049)	ENSKMAG00000021038	ENSKMAG00000021029	PLD3 (ENSKMAG00000021013)	ENSKMAG00000020993
Turquoise killifish	MODERN SPECIES	1615	DCUN1D5 (ENSNFUG00015008441)	OMPA (ENSNFUG00015008458)	ENSNFUG00015008462	ENSNFUG00015008477	ENSNFUG00015008497	ENSNFUG00015008498	hif1al (ENSNFUG00015008507)	zgc:152863 (ENSNFUG00015008538)	pak4 (ENSNFUG00015008541)	ENSNFUG00015008547	ENSNFUG00015008550	ccdc9 (ENSNFUG00015008556)	sae1 (ENSNFUG00015008566)	ercc2 (ENSNFUG00015008585)	klc3 (ENSNFUG00015008637)	CKM (ENSNFUG00015009734) ##22	ENSNFUG00015009785	ENSNFUG00015009801	ENSNFUG00015009837	blvrb (ENSNFUG00015010041)	ENSNFUG00015010060	kcnk6 (ENSNFUG00015010076)	ENSNFUG00015010085	ENSNFUG00015010142	ENSNFUG00015010160	PLD3 (ENSNFUG00015010180)	foxa3 (ENSNFUG00015010221)	IRF2BP1 (ENSNFUG00015010227)	ENSNFUG00015010233	NOVA2 (ENSNFUG00015010245)	st8sia1 (ENSNFUG00015010277)
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a.f	ENSGT01100000263520.a.a.a.a.b.a.c.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Poecilia	ANCESTRAL SPECIES	2	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
NAME_6	ANCESTRAL SPECIES	14	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000163299.B.b.b.h.c.a	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b
Sailfin molly	MODERN SPECIES	15														ENSPLAG00000023277	klc3 (ENSPLAG00000023319)	ENSPLAG00000023366 ##22	MARK4 (ENSPLAG00000023464)	ENSPLAG00000023488	ENSPLAG00000023496	ENSPLAG00000023502	ENSPLAG00000023509	ENSPLAG00000023684	blvrb (ENSPLAG00000023734)	ENSPLAG00000023756	kcnk6 (ENSPLAG00000023769)	ENSPLAG00000023804	ENSPLAG00000023816	PLD3 (ENSPLAG00000023827)	foxa3 (ENSPLAG00000023867)	irf2bp1 (ENSPLAG00000023882)	polr1g (ENSPLAG00000023890)
Amazon molly	MODERN SPECIES	300	ACTN4 (ENSPFOG00000017428)	ENSPFOG00000023661	ENSPFOG00000017317	DMWD (ENSPFOG00000017302)	hif1al (ENSPFOG00000017265)	zgc:152863 (ENSPFOG00000023603)	pak4 (ENSPFOG00000017238)	ccdc9 (ENSPFOG00000017207)	ENSPFOG00000022266	sae1 (ENSPFOG00000017192)	ZC3H4 (ENSPFOG00000017136)	zgc:154093 (ENSPFOG00000020091)	ercc2 (ENSPFOG00000017021)	ENSPFOG00000016988	klc3 (ENSPFOG00000016941)	CKM (ENSPFOG00000016916) ##22	ENSPFOG00000016884	ENSPFOG00000020089	ENSPFOG00000016866	ENSPFOG00000020087	SPTBN4 (ENSPFOG00000016533)	blvrb (ENSPFOG00000016480)	ENSPFOG00000016476	kcnk6 (ENSPFOG00000016473)	ENSPFOG00000016469	ENSPFOG00000016465	PLD3 (ENSPFOG00000016430)	foxa3 (ENSPFOG00000016416)	irf2bp1 (ENSPFOG00000016412)	polr1g (ENSPFOG00000016410)	ENSPFOG00000016392
Guppy	MODERN SPECIES	443	eif3k (ENSPREG00000020630)	zgc:85932 (ENSPREG00000020528)	ACTN4 (ENSPREG00000020467)	ENSPREG00000020415	DMWD (ENSPREG00000020399)	hif1al (ENSPREG00000019840)	zgc:152863 (ENSPREG00000019710)	pak4 (ENSPREG00000019697)	ENSPREG00000019683	ccdc9 (ENSPREG00000019655)	sae1 (ENSPREG00000019627)	ZC3H4 (ENSPREG00000019393)	zgc:154093 (ENSPREG00000019316)	ercc2 (ENSPREG00000019280)	klc3 (ENSPREG00000019255)	CKM (ENSPREG00000019235) ##22	MARK4 (ENSPREG00000019203)	ENSPREG00000019192	ENSPREG00000019161	SPTBN4 (ENSPREG00000019109)	blvrb (ENSPREG00000019074)	ENSPREG00000019068	kcnk6 (ENSPREG00000019057)	ENSPREG00000019036	PLD3 (ENSPREG00000019004)	foxa3 (ENSPREG00000018993)	irf2bp1 (ENSPREG00000018972)	ENSPREG00000018959	ENSPREG00000018946	GPR4 (ENSPREG00000018924)	eml2 (ENSPREG00000018891)
Platyfish	MODERN SPECIES	9	ACTN4 (ENSXMAG00000003126)	ENSXMAG00000003164	DMWD (ENSXMAG00000003182)	hif1al (ENSXMAG00000003186)	zgc:152863 (ENSXMAG00000003193)	pak4 (ENSXMAG00000003196)	ccdc9 (ENSXMAG00000004895)	ENSXMAG00000025670	sae1 (ENSXMAG00000003960)	ZC3H4 (ENSXMAG00000003957)	zgc:154093 (ENSXMAG00000019564)	ercc2 (ENSXMAG00000003922)	ENSXMAG00000027728	ENSXMAG00000024826	klc3 (ENSXMAG00000001420)	CKM (ENSXMAG00000018001) ##22	ENSXMAG00000022059	MARK4 (ENSXMAG00000005903)	ENSXMAG00000024251	ENSXMAG00000024942	ENSXMAG00000026531	ENSXMAG00000024393	SPTBN4 (ENSXMAG00000005963)	blvrb (ENSXMAG00000006057)	ENSXMAG00000028898	ENSXMAG00000025143	ENSXMAG00000012999	kcnk6 (ENSXMAG00000029960)	ENSXMAG00000029542	ENSXMAG00000028475	PLD3 (ENSXMAG00000013059)
NAME_4	ANCESTRAL SPECIES	85										ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B
Mummichog	MODERN SPECIES	622										ccdc9 (ENSFHEG00000002325)	sae1 (ENSFHEG00000002302)	ZC3H4 (ENSFHEG00000002266)	zgc:154093 (ENSFHEG00000002249)	ercc2 (ENSFHEG00000000072)	klc3 (ENSFHEG00000002193)	CKM (ENSFHEG00000002180) ##22	ENSFHEG00000002175	MARK4 (ENSFHEG00000002172)	ENSFHEG00000002166
Sheepshead minnow	MODERN SPECIES	621																CKM (ENSCVAG00000014525) ##22	MARK4 (ENSCVAG00000014469)	ENSCVAG00000014296	ENSCVAG00000014269	ENSCVAG00000014226	ENSCVAG00000014211	blvrb (ENSCVAG00000014148)	ENSCVAG00000014130	kcnk6 (ENSCVAG00000014123)	ENSCVAG00000014108	ENSCVAG00000014079	ENSCVAG00000014073	ENSCVAG00000014061	foxa3 (ENSCVAG00000014045)	irf2bp1 (ENSCVAG00000014034)	polr1g (ENSCVAG00000000356)
Oryzias	ANCESTRAL SPECIES	8	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.b.b	ENSGT00390000015655.a.m.a	ENSGT00390000010063	ENSGT00530000063816.c.b	ENSGT00950000182988.a.b.a	ENSGT00940000156251.a	ENSGT00940000155350.g	ENSGT00560000077232.B.g.a
Oryzias_b	ANCESTRAL SPECIES	32	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a.b	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509
Javanese ricefish	MODERN SPECIES	4	irf2bp1 (ENSOJAG00000017006)	foxa3 (ENSOJAG00000016992)	PLD3 (ENSOJAG00000016828)	ENSOJAG00000016810	ENSOJAG00000016800	ENSOJAG00000016785	ENSOJAG00000016760	ENSOJAG00000016748	zgc:152863 (ENSOJAG00000016739)	pak4 (ENSOJAG00000016724)	ccdc9 (ENSOJAG00000016705)	sae1 (ENSOJAG00000016671)	ZC3H4 (ENSOJAG00000016628)	zgc:154093 (ENSOJAG00000016621)	ercc2 (ENSOJAG00000015767)	CKM (ENSOJAG00000014807) ##22	MARK4 (ENSOJAG00000012712)	ENSOJAG00000012519	ENSOJAG00000012494	ENSOJAG00000012466	blvrb (ENSOJAG00000011961)	ENSOJAG00000011954	kcnk6 (ENSOJAG00000011948)	ENSOJAG00000011934	ENSOJAG00000011930	ENSOJAG00000011921	ENSOJAG00000011871	SLC35F2 (ENSOJAG00000011835)	clns1a (ENSOJAG00000011826)	aqp11 (ENSOJAG00000011818)	pak1 (ENSOJAG00000010240)
Indian medaka	MODERN SPECIES	12	foxa3 (ENSOMEG00000000616)	irf2bp1 (ENSOMEG00000022903)	polr1g (ENSOMEG00000022922)	ENSOMEG00000022934	ENSOMEG00000022949	GPR4 (ENSOMEG00000022961)	eml2 (ENSOMEG00000023021)	zgc:152863 (ENSOMEG00000023052)	pak4 (ENSOMEG00000023071)	ENSOMEG00000023085	sae1 (ENSOMEG00000023105)	ZC3H4 (ENSOMEG00000023128)	zgc:154093 (ENSOMEG00000023141)	ercc2 (ENSOMEG00000023166)	klc3 (ENSOMEG00000023186)	CKM (ENSOMEG00000023209) ##22	MARK4 (ENSOMEG00000023266)	ENSOMEG00000023293	ENSOMEG00000000630	ENSOMEG00000023310	ENSOMEG00000023331	ENSOMEG00000023348	ENSOMEG00000023361	blvrb (ENSOMEG00000023374)	ENSOMEG00000023386	kcnk6 (ENSOMEG00000023404)	ENSOMEG00000023431	ENSOMEG00000023453	ENSOMEG00000023462	ENSOMEG00000023472	ENSOMEG00000023487
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00390000007499	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000153887.B	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.b.b	ENSGT00390000015655.a.m.a	ENSGT00390000010063	ENSGT00530000063816.c.b	ENSGT00950000182988.a.b.a	ENSGT00940000156251.a	ENSGT00940000155350.g	ENSGT00560000077232.B.g.a
Japanese Medaka HdrR	MODERN SPECIES	4	foxa3 (ENSORLG00000022237)	irf2bp1 (ENSORLG00000024529)	ENSORLG00000001427	ENSORLG00000027761	ENSORLG00000021860	ENSORLG00000025858	eml2 (ENSORLG00000001463)	zgc:152863 (ENSORLG00000024927)	pak4 (ENSORLG00000001503)	ccdc9 (ENSORLG00000001516)	sae1 (ENSORLG00000001538)	ZC3H4 (ENSORLG00000029286)	zgc:154093 (ENSORLG00000001542)	ercc2 (ENSORLG00000001570)	klc3 (ENSORLG00000001581)	CKM (ENSORLG00000030295) ##22	ENSORLG00000001611	ENSORLG00000001615	ENSORLG00000022704	ENSORLG00000025963	ENSORLG00000001689	ENSORLG00000025195	ENSORLG00000025193	kcnk6 (ENSORLG00000001728)	ENSORLG00000001764	ENSORLG00000028971	ENSORLG00000001787	clns1a (ENSORLG00000001811)	aqp11 (ENSORLG00000028601)	pak1 (ENSORLG00000001860)	GDPD4 (ENSORLG00000001876)
Chinese medaka	MODERN SPECIES	538	sbds (ENSOSIG00000013618)	ENSOSIG00000013619	foxa3 (ENSOSIG00000013623)	irf2bp1 (ENSOSIG00000013626)	ENSOSIG00000013630	ENSOSIG00000013632	ENSOSIG00000013637	eml2 (ENSOSIG00000013652)	zgc:152863 (ENSOSIG00000013838)	pak4 (ENSOSIG00000013841)	ccdc9 (ENSOSIG00000013846)	sae1 (ENSOSIG00000013848)	zgc:154093 (ENSOSIG00000013850)	ercc2 (ENSOSIG00000013851)	klc3 (ENSOSIG00000013862)	CKM (ENSOSIG00000015130) ##22	ENSOSIG00000015170	MARK4 (ENSOSIG00000015171)	ENSOSIG00000015396	blvrb (ENSOSIG00000015409)	ENSOSIG00000015412	kcnk6 (ENSOSIG00000015414)	ENSOSIG00000015421	SLC35F2 (ENSOSIG00000015424)	clns1a (ENSOSIG00000015425)	aqp11 (ENSOSIG00000015427)	pak1 (ENSOSIG00000015442)	GDPD4 (ENSOSIG00000015583)	myo7aa (ENSOSIG00000015631)	flot2b (ENSOSIG00000017009)	FAM222B (ENSOSIG00000017014)
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b
Cichlidae	ANCESTRAL SPECIES	21	ENSGT00940000156536.e.b	ENSGT00530000064411.a	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	19	ENSGT00940000156536.e.b	ENSGT00530000064411.a	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	15	ENSGT00940000156536.e.b	ENSGT00940000175310	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Haplochromini	ANCESTRAL SPECIES	15	ENSGT00940000156155	ENSGT00390000009497.b	ENSGT00940000156536.e.b	ENSGT00940000175310	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a
Burton s mouthbrooder	MODERN SPECIES	416	dcun1d5 (ENSHBUG00000001916)	ompa (ENSHBUG00000001921)	CAPN5 (ENSHBUG00000001938)	panx1a (ENSHBUG00000001949)	ENSHBUG00000001978	DMWD (ENSHBUG00000002000)	hif1al (ENSHBUG00000000829)	zgc:152863 (ENSHBUG00000002038)	ENSHBUG00000002054	ccdc9 (ENSHBUG00000002079)	sae1 (ENSHBUG00000002103)	ZC3H4 (ENSHBUG00000002125)	zgc:154093 (ENSHBUG00000002138)	ercc2 (ENSHBUG00000002187)	klc3 (ENSHBUG00000002224)	CKM (ENSHBUG00000002240) ##22	MARK4 (ENSHBUG00000002284)	ENSHBUG00000002307	ENSHBUG00000002320	ENSHBUG00000002354	blvrb (ENSHBUG00000002376)	ENSHBUG00000002392	kcnk6 (ENSHBUG00000002403)	ENSHBUG00000002424	PLD3 (ENSHBUG00000002445)	foxa3 (ENSHBUG00000002454)	irf2bp1 (ENSHBUG00000002463)	polr1g (ENSHBUG00000001063)	NOVA1 (ENSHBUG00000002485)	GPR4 (ENSHBUG00000002495)	eml2 (ENSHBUG00000002552)
Haplochromini_A	ANCESTRAL SPECIES	23	ENSGT00940000156155	ENSGT00940000156536.e.b	ENSGT00390000009497.b	ENSGT00940000175310	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a
Haplochromini_B	ANCESTRAL SPECIES	27	ENSGT00940000156648.c	ENSGT00940000156155	ENSGT00390000009497.b	ENSGT00940000156536.e.b	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a
Zebra mbuna	MODERN SPECIES	1096	dcun1d5 (ENSMZEG00005024475)	ompa (ENSMZEG00005024473)	CAPN5 (ENSMZEG00005024470)	panx1a (ENSMZEG00005024469)	ENSMZEG00005024463	DMWD (ENSMZEG00005024462)	hif1al (ENSMZEG00005024460)	zgc:152863 (ENSMZEG00005024458)	ENSMZEG00005024456	ccdc9 (ENSMZEG00005024453)	sae1 (ENSMZEG00005024449)	ZC3H4 (ENSMZEG00005024446)	zgc:154093 (ENSMZEG00005024445)	ercc2 (ENSMZEG00005024441)	klc3 (ENSMZEG00005024438)	CKM (ENSMZEG00005024436) ##22	MARK4 (ENSMZEG00005024430)	ENSMZEG00005024426	ENSMZEG00005024424	ENSMZEG00005024423	SPTBN4 (ENSMZEG00005024422)	blvrb (ENSMZEG00005024420)	ENSMZEG00005024419	kcnk6 (ENSMZEG00005024417)	ENSMZEG00005024414	PLD3 (ENSMZEG00005024412)	foxa3 (ENSMZEG00005024411)	irf2bp1 (ENSMZEG00005024410)	polr1g (ENSMZEG00005024408)	ENSMZEG00005024407	GPR4 (ENSMZEG00005024405)
Eastern happy	MODERN SPECIES	5	dcun1d5 (ENSACLG00000016814)	CAPN5 (ENSACLG00000016887)	ompa (ENSACLG00000016938)	panx1a (ENSACLG00000016951)	ENSACLG00000017048	DMWD (ENSACLG00000017242)	hif1al (ENSACLG00000017298)	zgc:152863 (ENSACLG00000017388)	ENSACLG00000017394	ccdc9 (ENSACLG00000017419)	sae1 (ENSACLG00000017451)	ZC3H4 (ENSACLG00000017500)	zgc:154093 (ENSACLG00000017552)	ercc2 (ENSACLG00000017573)	klc3 (ENSACLG00000017645)	CKM (ENSACLG00000017693) ##22	MARK4 (ENSACLG00000017756)	ENSACLG00000017849	ENSACLG00000017925	ENSACLG00000017941	SPTBN4 (ENSACLG00000017958)	blvrb (ENSACLG00000018120)	ENSACLG00000018139	kcnk6 (ENSACLG00000018159)	ENSACLG00000018176	ENSACLG00000018188	PLD3 (ENSACLG00000018212)	foxa3 (ENSACLG00000018238)	irf2bp1 (ENSACLG00000018248)	polr1g (ENSACLG00000018258)	ENSACLG00000018329
P. nyererei	MODERN SPECIES	447	CAPN5 (ENSPNYG00000021803)	ompa (ENSPNYG00000021817)	ENSPNYG00000021835	panx1a (ENSPNYG00000021838)	ENSPNYG00000021877	DMWD (ENSPNYG00000021885)	hif1al (ENSPNYG00000021897)	zgc:152863 (ENSPNYG00000021908)	ENSPNYG00000021913	ccdc9 (ENSPNYG00000021926)	sae1 (ENSPNYG00000021940)	ZC3H4 (ENSPNYG00000021966)	zgc:154093 (ENSPNYG00000021986)	ercc2 (ENSPNYG00000022007)	klc3 (ENSPNYG00000022051)	CKM (ENSPNYG00000022064) ##22	MARK4 (ENSPNYG00000022081)	ENSPNYG00000022104	ENSPNYG00000022129	blvrb (ENSPNYG00000022174)	ENSPNYG00000022189	kcnk6 (ENSPNYG00000022202)	ENSPNYG00000022215	PLD3 (ENSPNYG00000022240)	foxa3 (ENSPNYG00000022252)	irf2bp1 (ENSPNYG00000022257)	polr1g (ENSPNYG00000022270)	ENSPNYG00000022283	GPR4 (ENSPNYG00000022294)	ENSPNYG00000022298	eml2 (ENSPNYG00000022324)
Lyretail cichlid	MODERN SPECIES	426	CUL5 (ENSNBRG00000015907)	ENSNBRG00000015948	ompa (ENSNBRG00000015957)	panx1a (ENSNBRG00000015971)	ENSNBRG00000016014	DMWD (ENSNBRG00000016057)	hif1al (ENSNBRG00000016073)	zgc:152863 (ENSNBRG00000016096)	ENSNBRG00000016107	ccdc9 (ENSNBRG00000016143)	ENSNBRG00000016288	sae1 (ENSNBRG00000016306)	ZC3H4 (ENSNBRG00000016333)	zgc:154093 (ENSNBRG00000016367)	ercc2 (ENSNBRG00000016385)	ENSNBRG00000016461 ##22	ENSNBRG00000016494	ENSNBRG00000016500	MARK4 (ENSNBRG00000016515)	ENSNBRG00000016537	ENSNBRG00000016550	ENSNBRG00000016577	ENSNBRG00000016630	blvrb (ENSNBRG00000016659)	ENSNBRG00000016688	kcnk6 (ENSNBRG00000016706)	ENSNBRG00000016719	ENSNBRG00000016735	foxa3 (ENSNBRG00000016745)	irf2bp1 (ENSNBRG00000016755)	polr1g (ENSNBRG00000016766)
Nile tilapia	MODERN SPECIES	5	CAPN5 (ENSONIG00000007780)	ENSONIG00000007777	panx1a (ENSONIG00000007775)	ENSONIG00000007769	ENSONIG00000034463	hif1al (ENSONIG00000007759)	zgc:152863 (ENSONIG00000029103)	ENSONIG00000007751	ccdc9 (ENSONIG00000007748)	sae1 (ENSONIG00000007743)	ZC3H4 (ENSONIG00000007735)	zgc:154093 (ENSONIG00000007734)	ercc2 (ENSONIG00000007730)	klc3 (ENSONIG00000007722)	ENSONIG00000029316	CKM (ENSONIG00000007718) ##22	MARK4 (ENSONIG00000007711)	ENSONIG00000037847	SPTBN4 (ENSONIG00000007681)	ENSONIG00000041911	blvrb (ENSONIG00000007679)	ENSONIG00000032315	kcnk6 (ENSONIG00000007677)	ENSONIG00000028819	ENSONIG00000032673	PLD3 (ENSONIG00000007668)	foxa3 (ENSONIG00000032875)	irf2bp1 (ENSONIG00000007666)	polr1g (ENSONIG00000035771)	NOVA1 (ENSONIG00000007665)	ENSONIG00000039818
Midas cichlid	MODERN SPECIES	85					ENSACIG00000008310	DMWD (ENSACIG00000008224)	hif1al (ENSACIG00000008174)	zgc:152863 (ENSACIG00000008159)	pak4 (ENSACIG00000008132)	ccdc9 (ENSACIG00000008094)	sae1 (ENSACIG00000008076)	ZC3H4 (ENSACIG00000008057)	zgc:154093 (ENSACIG00000008044)	ercc2 (ENSACIG00000008002)	klc3 (ENSACIG00000007965)	CKM (ENSACIG00000007945) ##22	MARK4 (ENSACIG00000007908)	ENSACIG00000007892	ENSACIG00000007882	ENSACIG00000007855	SPTBN4 (ENSACIG00000007769)	blvrb (ENSACIG00000007750)	ENSACIG00000007732	kcnk6 (ENSACIG00000007709)	ENSACIG00000007692	PLD3 (ENSACIG00000007667)	foxa3 (ENSACIG00000007638)	ENSACIG00000007610	ENSACIG00000007544	ENSACIG00000007499	eml2 (ENSACIG00000007448)
Pomacentridae	ANCESTRAL SPECIES	27	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Pomacentridae_A	ANCESTRAL SPECIES	32						ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00990000203908	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Amphiprion	ANCESTRAL SPECIES	30						ENSGT00940000160011	ENSGT00550000075007	ENSGT00990000203908	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Clown anemonefish	MODERN SPECIES	2434														ENSAOCG00000003931	ENSAOCG00000003936	ENSAOCG00000003955 ##22	MARK4 (ENSAOCG00000003969)
Orange clownfish	MODERN SPECIES	23	DMWD (ENSAPEG00000017294)	ENSAPEG00000017219	zgc:154093 (ENSAPEG00000017215)	ENSAPEG00000017188	ZC3H4 (ENSAPEG00000017098)	ENSAPEG00000017083	sae1 (ENSAPEG00000017029)	ccdc9 (ENSAPEG00000017007)	pak4 (ENSAPEG00000016955)	zgc:152863 (ENSAPEG00000016923)	hif1al (ENSAPEG00000016855)	ENSAPEG00000016816	ercc2 (ENSAPEG00000016712)	klc3 (ENSAPEG00000016658)	ENSAPEG00000016649	CKM (ENSAPEG00000016617) ##22	MARK4 (ENSAPEG00000016512)	ENSAPEG00000016483	ENSAPEG00000016473	ENSAPEG00000016462	ENSAPEG00000016445	ENSAPEG00000016312	blvrb (ENSAPEG00000016288)	ENSAPEG00000016281	kcnk6 (ENSAPEG00000016275)	ENSAPEG00000016237	ENSAPEG00000016222	PLD3 (ENSAPEG00000016198)	foxa3 (ENSAPEG00000016188)	irf2bp1 (ENSAPEG00000016156)	polr1g (ENSAPEG00000016153)
Spiny chromis	MODERN SPECIES	313							zgc:154093 (ENSAPOG00000014080)	ZC3H4 (ENSAPOG00000014063)	sae1 (ENSAPOG00000000382)	ccdc9 (ENSAPOG00000014008)	pak4 (ENSAPOG00000013944)	zgc:152863 (ENSAPOG00000013909)	hif1al (ENSAPOG00000013891)	ercc2 (ENSAPOG00000000375)	klc3 (ENSAPOG00000000373)	CKM (ENSAPOG00000013645) ##22	ENSAPOG00000013617	MARK4 (ENSAPOG00000013608)	ENSAPOG00000013511	ENSAPOG00000013499	ENSAPOG00000013493
Bicolor damselfish	MODERN SPECIES	2246																ENSSPAG00000020685 ##22	ENSSPAG00000020716	MARK4 (ENSSPAG00000020723)	ENSSPAG00000020758	ENSSPAG00000020771	ENSSPAG00000020811
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b
Pleuronectoidei	ANCESTRAL SPECIES	35	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Tongue sole	MODERN SPECIES	14	ENSCSEG00000006345	ACTN4 (ENSCSEG00000006298)	zgc:85932 (ENSCSEG00000006288)	eif3k (ENSCSEG00000006285)	MAP4K1 (ENSCSEG00000006273)	hif1al (ENSCSEG00000006117)	DMWD (ENSCSEG00000006104)	ENSCSEG00000006091	ccdc9 (ENSCSEG00000006079)	ENSCSEG00000006077	sae1 (ENSCSEG00000006067)	ZC3H4 (ENSCSEG00000006057)	zgc:154093 (ENSCSEG00000006054)	ercc2 (ENSCSEG00000006041)	klc3 (ENSCSEG00000006036)	CKM (ENSCSEG00000006027) ##22	MARK4 (ENSCSEG00000005996)	ENSCSEG00000005994	ENSCSEG00000005983	ENSCSEG00000005974	SPTBN4 (ENSCSEG00000005954)	blvrb (ENSCSEG00000005949)	ENSCSEG00000005944	kcnk6 (ENSCSEG00000005940)	ENSCSEG00000005936	ENSCSEG00000005933	PLD3 (ENSCSEG00000005923)	foxa3 (ENSCSEG00000005919)	irf2bp1 (ENSCSEG00000005917)	polr1g (ENSCSEG00000005914)	ENSCSEG00000005910
Turbot	MODERN SPECIES	15	EIF3K (ENSSMAG00000019485)	ENSSMAG00000019506	ENSSMAG00000019528	ENSSMAG00000036191	ENSSMAG00000019553	hif1al (ENSSMAG00000019558)	ENSSMAG00000019605	pak4 (ENSSMAG00000019623)	CCDC9 (ENSSMAG00000019654)	ENSSMAG00000019684	sae1 (ENSSMAG00000019688)	ZC3H4 (ENSSMAG00000019705)	ercc2 (ENSSMAG00000019720)	zgc:154093 (ENSSMAG00000019769)	klc3 (ENSSMAG00000019778)	CKM (ENSSMAG00000019804) ##22	ENSSMAG00000024362	ENSSMAG00000019840	ENSSMAG00000019945	ENSSMAG00000019949	ENSSMAG00000027612	ENSSMAG00000033788	ENSSMAG00000019985	blvrb (ENSSMAG00000030546)	ENSSMAG00000020147	kcnk6 (ENSSMAG00000020148)	ENSSMAG00000034755	ENSSMAG00000029001	ENSSMAG00000020165	foxa3 (ENSSMAG00000022453)	irf2bp1 (ENSSMAG00000020176)
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00990000209072	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Seriola	ANCESTRAL SPECIES	38	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00990000209072	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Greater amberjack	MODERN SPECIES	14	DMWD (ENSSDUG00000002866)	hif1al (ENSSDUG00000002805)	zgc:152863 (ENSSDUG00000002772)	pak4 (ENSSDUG00000002720)	ENSSDUG00000002691	CCDC9 (ENSSDUG00000002672)	ENSSDUG00000002661	sae1 (ENSSDUG00000002581)	ZC3H4 (ENSSDUG00000002538)	zgc:154093 (ENSSDUG00000002517)	ENSSDUG00000002509	ENSSDUG00000002493	ercc2 (ENSSDUG00000002397)	klc3 (ENSSDUG00000002344)	ENSSDUG00000002337	CKM (ENSSDUG00000002308) ##22	MARK4 (ENSSDUG00000002245)	ENSSDUG00000002229	ENSSDUG00000002195	ENSSDUG00000002174	ENSSDUG00000002167	SPTBN4 (ENSSDUG00000002069)	blvrb (ENSSDUG00000002045)	ENSSDUG00000002034	kcnk6 (ENSSDUG00000002020)	ENSSDUG00000002001	ENSSDUG00000001979	PLD3 (ENSSDUG00000001932)	foxa3 (ENSSDUG00000001899)	ENSSDUG00000001888	polr1g (ENSSDUG00000001874)
Yellowtail amberjack	MODERN SPECIES	2952																ENSSLDG00000002552 ##22	ENSSLDG00000002609	MARK4 (ENSSLDG00000002620)	ENSSLDG00000002709	ENSSLDG00000002739	ENSSLDG00000002776	ENSSLDG00000002790	SPTBN4 (ENSSLDG00000002814)	blvrb (ENSSLDG00000003037)	ENSSLDG00000003083	kcnk6 (ENSSLDG00000003090)	ENSSLDG00000003104	PLD3 (ENSSLDG00000003145)	foxa3 (ENSSLDG00000003162)	irf2bp1 (ENSSLDG00000003172)	polr1g (ENSSLDG00000003180)
Barramundi perch	MODERN SPECIES	109									ccdc9 (ENSLCAG00010009389)	sae1 (ENSLCAG00010009375)	ZC3H4 (ENSLCAG00010009369)	zgc:154093 (ENSLCAG00010009365)	ercc2 (ENSLCAG00010009350)	klc3 (ENSLCAG00010009229)	ENSLCAG00010009199	CKM (ENSLCAG00010009057) ##22	MARK4 (ENSLCAG00010009000)	ENSLCAG00010008953	ENSLCAG00010008941	ENSLCAG00010008937	ENSLCAG00010008513	blvrb (ENSLCAG00010008406)	ENSLCAG00010008398	kcnk6 (ENSLCAG00010008395)	ENSLCAG00010008387	ENSLCAG00010008380	PLD3 (ENSLCAG00010008373)	foxa3 (ENSLCAG00010008370)	irf2bp1 (ENSLCAG00010008366)	polr1g (ENSLCAG00010008363)	ENSLCAG00010008353
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00390000010744.m.c	ENSGT00940000156014.g
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000017172	ACTN4 (ENSMAMG00000017079)	ENSMAMG00000017064	ENSMAMG00000017036	MAP4K1 (ENSMAMG00000017021)	ENSMAMG00000016996	hif1al (ENSMAMG00000016930)	ENSMAMG00000016923	pak4 (ENSMAMG00000016903)	CCDC9 (ENSMAMG00000016880)	sae1 (ENSMAMG00000016845)	ENSMAMG00000025645	zgc:154093 (ENSMAMG00000026176)	ercc2 (ENSMAMG00000016724)	klc3 (ENSMAMG00000016669)	CKM (ENSMAMG00000016645) ##22	ENSMAMG00000016584	ENSMAMG00000016567	ENSMAMG00000026704	ENSMAMG00000025363	ENSMAMG00000016420	blvrb (ENSMAMG00000016407)	ENSMAMG00000016404	kcnk6 (ENSMAMG00000016396)	ENSMAMG00000016366	ENSMAMG00000016343	foxa3 (ENSMAMG00000016328)	irf2bp1 (ENSMAMG00000016322)	ENSMAMG00000016319	ENSMAMG00000016281	ENSMAMG00000016268
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000161740	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00390000010744.m.c
Climbing perch	MODERN SPECIES	4	ENSATEG00000004882	EIF3K (ENSATEG00000004929)	MAP4K1 (ENSATEG00000004907)	ENSATEG00000004977	hif1al (ENSATEG00000005012)	ENSATEG00000005062	pak4 (ENSATEG00000005072)	CCDC9 (ENSATEG00000005109)	ENSATEG00000005122	sae1 (ENSATEG00000005142)	ENSATEG00000029528	ENSATEG00000026714	zgc:154093 (ENSATEG00000005248)	ercc2 (ENSATEG00000005268)	klc3 (ENSATEG00000005340)	CKM (ENSATEG00000005383) ##22	ENSATEG00000005421	ENSATEG00000027802	SPTBN4 (ENSATEG00000006069)	blvrb (ENSATEG00000006287)	ENSATEG00000006290	kcnk6 (ENSATEG00000006295)	PLD3 (ENSATEG00000006458)	foxa3 (ENSATEG00000006467)	irf2bp1 (ENSATEG00000006477)	ENSATEG00000006485	ENSATEG00000006500	ENSATEG00000006537	ENSATEG00000006581	ENSATEG00000006703	ENSATEG00000027671
Siamese fighting fish	MODERN SPECIES	4	ENSBSLG00000002728	ENSBSLG00000002711	NYAP2 (ENSBSLG00000002694)	ENSBSLG00000002674	ENSBSLG00000002559	DMWD (ENSBSLG00000002536)	hif1al (ENSBSLG00000002431)	zgc:152863 (ENSBSLG00000002395)	ENSBSLG00000002374	ccdc9 (ENSBSLG00000002358)	sae1 (ENSBSLG00000002324)	ZC3H4 (ENSBSLG00000002283)	zgc:154093 (ENSBSLG00000002255)	ercc2 (ENSBSLG00000026728)	klc3 (ENSBSLG00000026727)	CKM (ENSBSLG00000026726) ##22	MARK4 (ENSBSLG00000026725)	ENSBSLG00000026724	ENSBSLG00000026723	ENSBSLG00000026722	ENSBSLG00000026721	blvrb (ENSBSLG00000026720)	ENSBSLG00000026719	kcnk6 (ENSBSLG00000026718)	PLD3 (ENSBSLG00000026713)	foxa3 (ENSBSLG00000026711)	irf2bp1 (ENSBSLG00000026710)	ENSBSLG00000026709	ENSBSLG00000026708	GPR4 (ENSBSLG00000026705)	eml2 (ENSBSLG00000026704)
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Ballan wrasse	MODERN SPECIES	200							hif1al (ENSLBEG00000010994)	zgc:152863 (ENSLBEG00000010953)	pak4 (ENSLBEG00000010883)	ccdc9 (ENSLBEG00000010829)	sae1 (ENSLBEG00000010775)	ZC3H4 (ENSLBEG00000010735)	zgc:154093 (ENSLBEG00000010700)	ercc2 (ENSLBEG00000010573)	klc3 (ENSLBEG00000010476)	CKM (ENSLBEG00000010410) ##22	MARK4 (ENSLBEG00000010272)	myo7aa (ENSLBEG00000010075)	GDPD4 (ENSLBEG00000009985)	pak1 (ENSLBEG00000009841)	aqp11 (ENSLBEG00000009767)	clns1a (ENSLBEG00000009737)	ENSLBEG00000009701	panx1a (ENSLBEG00000009670)	ENSLBEG00000009526	med17 (ENSLBEG00000009459)	ech1 (ENSLBEG00000009395)	ENSLBEG00000009182	FAM222B (ENSLBEG00000009142)	flot2b (ENSLBEG00000009104)	rhbdd1 (ENSLBEG00000008984)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Perciformes	ANCESTRAL SPECIES	10	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000162953	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00390000018436.b	ENSGT00940000158344.a.a	ENSGT00910000144115.b	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00990000209072	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00940000157623	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000162953	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000153887.B
Lumpfish	MODERN SPECIES	4												ENSCLMG00005004507	si:ch211-215a10.4 (ENSCLMG00005004658)	ercc2 (ENSCLMG00005004783)	klc3 (ENSCLMG00005005638)	CKM (ENSCLMG00005005643) ##22	MARK4 (ENSCLMG00005005684)	ENSCLMG00005008228	ENSCLMG00005008236	ENSCLMG00005008239	pid1 (ENSCLMG00005008240)	dner (ENSCLMG00005008241)	trip12 (ENSCLMG00005008254)	grk7b (ENSCLMG00005009124)	fzd9b (ENSCLMG00005009134)	baz1b (ENSCLMG00005009135)	bcl7bb (ENSCLMG00005009136)	hip1 (ENSCLMG00005009137)	ENSCLMG00005009156	gdpd1 (ENSCLMG00005009157)	tmem120ab (ENSCLMG00005009164)
Stickleback	MODERN SPECIES		ENSGACG00000012297	ENSGACG00000012299	slc8a2b (ENSGACG00000012302)	ENSGACG00000012311	hnrnpl2 (ENSGACG00000012321)	pak4 (ENSGACG00000012327)	zgc:152863 (ENSGACG00000012331)	ccdc9 (ENSGACG00000012335)	ENSGACG00000012339	sae1 (ENSGACG00000012342)	ZC3H4 (ENSGACG00000012374)	zgc:154093 (ENSGACG00000012382)	DNAH2 (ENSGACG00000012383)	ercc2 (ENSGACG00000012407)	klc3 (ENSGACG00000012419)	CKM (ENSGACG00000012427) ##22	MARK4 (ENSGACG00000012485)	ENSGACG00000012515	ENSGACG00000012517	ENSGACG00000012523	SPTBN4 (ENSGACG00000012524)	blvrb (ENSGACG00000012552)	ENSGACG00000012569	kcnk6 (ENSGACG00000012571)	ENSGACG00000012586	ENSGACG00000012590	ENSGACG00000012592	ENSGACG00000012604	PLD3 (ENSGACG00000012605)	foxa3 (ENSGACG00000012621)	irf2bp1 (ENSGACG00000012622)
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000179739	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B
Pike perch	MODERN SPECIES	19	zgc:85932 (ENSSLUG00000014858)	eif3k (ENSSLUG00000014840)	ENSSLUG00000014828	ENSSLUG00000014820	DMWD (ENSSLUG00000014814)	hif1al (ENSSLUG00000014784)	zgc:152863 (ENSSLUG00000014779)	pak4 (ENSSLUG00000014738)	CCDC9 (ENSSLUG00000014726)	ENSSLUG00000014720	sae1 (ENSSLUG00000014712)	ZC3H4 (ENSSLUG00000014697)	zgc:154093 (ENSSLUG00000014685)	ercc2 (ENSSLUG00000013628)	klc3 (ENSSLUG00000012176)	CKM (ENSSLUG00000012056) ##22	MARK4 (ENSSLUG00000011559)	ENSSLUG00000011525	ENSSLUG00000011521	ENSSLUG00000011511	ENSSLUG00000011509	SPTBN4 (ENSSLUG00000005732)	blvrb (ENSSLUG00000005261)	ENSSLUG00000005255	kcnk6 (ENSSLUG00000005248)	ENSSLUG00000005229	cxcl19 (ENSSLUG00000005209)	trmt10b (ENSSLUG00000014702)	intu (ENSSLUG00000014679)	ino80b (ENSSLUG00000014672)	AADAT (ENSSLUG00000014589)
Channel bull blenny	MODERN SPECIES	4	eif3k (ENSCGOG00000002000)	MAP4K1 (ENSCGOG00000001987)	DMWD (ENSCGOG00000001979)	hif1al (ENSCGOG00000001822)	zgc:152863 (ENSCGOG00000001812)	ENSCGOG00000001778	ENSCGOG00000001774	ccdc9 (ENSCGOG00000001770)	ENSCGOG00000001767	sae1 (ENSCGOG00000001643)	ZC3H4 (ENSCGOG00000001609)	zgc:154093 (ENSCGOG00000001588)	ercc2 (ENSCGOG00000021321)	klc3 (ENSCGOG00000021198)	ENSCGOG00000021187	CKM (ENSCGOG00000020913) ##22	MARK4 (ENSCGOG00000020827)	ENSCGOG00000020799	ENSCGOG00000020795	ENSCGOG00000020791	ENSCGOG00000020785	ENSCGOG00000020783	ENSCGOG00000020779	SPTBN4 (ENSCGOG00000020762)	blvrb (ENSCGOG00000020754)	ENSCGOG00000020753	kcnk6 (ENSCGOG00000020751)	ENSCGOG00000020729	PLD3 (ENSCGOG00000020586)	foxa3 (ENSCGOG00000020577)	irf2bp1 (ENSCGOG00000020575)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.a	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b
Gilthead seabream	MODERN SPECIES	11	ENSSAUG00010015874	ENSSAUG00010015876	zgc:85932 (ENSSAUG00010015877)	eif3k (ENSSAUG00010015878)	ENSSAUG00010015881	DMWD (ENSSAUG00010015887)	hif1al (ENSSAUG00010015894)	zgc:152863 (ENSSAUG00010015921)	ENSSAUG00010015927	ccdc9 (ENSSAUG00010015933)	sae1 (ENSSAUG00010015947)	ZC3H4 (ENSSAUG00010003836)	zgc:154093 (ENSSAUG00010003843)	ercc2 (ENSSAUG00010003850)	klc3 (ENSSAUG00010003900)	CKM (ENSSAUG00010005322) ##22	ENSSAUG00010005330	MARK4 (ENSSAUG00010005345)	ENSSAUG00010005394	ENSSAUG00010005397	ENSSAUG00010005401	ENSSAUG00010005404	ENSSAUG00010005509	blvrb (ENSSAUG00010010065)	ENSSAUG00010010067	kcnk6 (ENSSAUG00010010068)	ENSSAUG00010010069	ENSSAUG00010010071	ENSSAUG00010010074	ENSSAUG00010010075	ENSSAUG00010010077
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.a	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
European seabass	MODERN SPECIES	3	ACTN4 (ENSDLAG00005016446)	ENSDLAG00005016361	ENSDLAG00005032033	MAP4K1 (ENSDLAG00005016305)	ENSDLAG00005016290	ENSDLAG00005016161	ENSDLAG00005031941	CCDC9 (ENSDLAG00005028930)	ENSDLAG00005030869	sae1 (ENSDLAG00005016016)	ZC3H4 (ENSDLAG00005015976)	zgc:154093 (ENSDLAG00005032365)	ercc2 (ENSDLAG00005015277)	klc3 (ENSDLAG00005014953)	ENSDLAG00005014932	CKM (ENSDLAG00005014209) ##22	ENSDLAG00005014354	ENSDLAG00005014335	ENSDLAG00005014317	ENSDLAG00005014309	ENSDLAG00005012820	ENSDLAG00005033501	kcnk6 (ENSDLAG00005027448)	ENSDLAG00005034851	ENSDLAG00005033731	ENSDLAG00005012595	foxa3 (ENSDLAG00005012583)	irf2bp1 (ENSDLAG00005012579)	ENSDLAG00005012570	ENSDLAG00005012534	ENSDLAG00005012529
Large yellow croaker	MODERN SPECIES	479	zgc:85932 (ENSLCRG00005017796)	eif3k (ENSLCRG00005017791)	MAP4K1 (ENSLCRG00005016815)	DMWD (ENSLCRG00005016801)	hif1al (ENSLCRG00005016796)	zgc:152863 (ENSLCRG00005016794)	pak4 (ENSLCRG00005016791)	ccdc9 (ENSLCRG00005016790)	ENSLCRG00005016788	sae1 (ENSLCRG00005016787)	ENSLCRG00005016785	ercc2 (ENSLCRG00005016783)	klc3 (ENSLCRG00005016671)	ENSLCRG00005016661	ENSLCRG00005016659	CKM (ENSLCRG00005016657) ##22	ENSLCRG00005016649	ENSLCRG00005016647	ENSLCRG00005016646	ENSLCRG00005016643	SPTBN4 (ENSLCRG00005016603)	blvrb (ENSLCRG00005016601)	ENSLCRG00005016598	kcnk6 (ENSLCRG00005016597)	ENSLCRG00005016595	ENSLCRG00005016594	PLD3 (ENSLCRG00005016585)	foxa3 (ENSLCRG00005016584)	irf2bp1 (ENSLCRG00005016583)	polr1g (ENSLCRG00005016582)	ENSLCRG00005016579
Tetraodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000153887.B	ENSGT00390000010744.m.c
Fugu	MODERN SPECIES	2	MAP4K1 (ENSTRUG00000008924)	DMWD (ENSTRUG00000008770)	hif1al (ENSTRUG00000008563)	ENSTRUG00000030434	zgc:152863 (ENSTRUG00000021972)	ENSTRUG00000027410	pak4 (ENSTRUG00000008318)	ENSTRUG00000027544	ccdc9 (ENSTRUG00000008201)	sae1 (ENSTRUG00000008065)	ZC3H4 (ENSTRUG00000007843)	zgc:154093 (ENSTRUG00000007807)	ercc2 (ENSTRUG00000007303)	klc3 (ENSTRUG00000007207)	ENSTRUG00000029021	ckma (ENSTRUG00000006969) ##22	MARK4 (ENSTRUG00000006414)	ENSTRUG00000005321	SPTBN4 (ENSTRUG00000004257)	blvrb (ENSTRUG00000004082)	ENSTRUG00000025168	kcnk6 (ENSTRUG00000003814)	ENSTRUG00000026358	PLD3 (ENSTRUG00000016296)	foxa3 (ENSTRUG00000025013)	irf2bp1 (ENSTRUG00000022195)	ENSTRUG00000021943	ENSTRUG00000016275	ENSTRUG00000031296	eml2 (ENSTRUG00000016192)	rhbdd1 (ENSTRUG00000016174)
Tetraodon	MODERN SPECIES	8	ACTN4 (ENSTNIG00000014277)	zgc:85932 (ENSTNIG00000006536)	eif3k (ENSTNIG00000006537)	ENSTNIG00000006538	MAP4K1 (ENSTNIG00000006534)	DMWD (ENSTNIG00000006652)	hif1al (ENSTNIG00000006798)	zgc:152863 (ENSTNIG00000006799)	pak4 (ENSTNIG00000006800)	ccdc9 (ENSTNIG00000006801)	sae1 (ENSTNIG00000013431)	ZC3H4 (ENSTNIG00000013432)	zgc:154093 (ENSTNIG00000000493)	ercc2 (ENSTNIG00000018980)	klc3 (ENSTNIG00000018981)	ckma (ENSTNIG00000018982) ##22	MARK4 (ENSTNIG00000018983)	ENSTNIG00000018984	ENSTNIG00000018985	blvrb (ENSTNIG00000018986)	kcnk6 (ENSTNIG00000018987)	ENSTNIG00000018988	ENSTNIG00000018989	PLD3 (ENSTNIG00000018990)	foxa3 (ENSTNIG00000018991)	irf2bp1 (ENSTNIG00000018992)	NOVA1 (ENSTNIG00000018993)	ENSTNIG00000018994	eml2 (ENSTNIG00000018995)	rhbdd1 (ENSTNIG00000018996)	ENSTNIG00000000460
Sarcopterygii	ANCESTRAL SPECIES	492													ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b
Coelacanth	MODERN SPECIES	324	qpctla (ENSLACG00000006756)	FBXO46 (ENSLACG00000007162)	ENSLACG00000007720	EML2 (ENSLACG00000009810)	GPR4 (ENSLACG00000010500)	OPA3 (ENSLACG00000011561)	VASP (ENSLACG00000011786)	FOSB (ENSLACG00000013070)	ENSLACG00000013449	ENSLACG00000013574	ENSLACG00000013798	PPP1R13L (ENSLACG00000014022)	ERCC2 (ENSLACG00000014155)	ENSLACG00000014371	ENSLACG00000022312	CKM (ENSLACG00000014633) ##22	MARK4 (ENSLACG00000014767)	CCDC9 (ENSLACG00000015361)	SAE1 (ENSLACG00000015982)	ZC3H4 (ENSLACG00000016248)	ENSLACG00000016371	zgc:154093 (ENSLACG00000016524)	ppp1r14ab (ENSLACG00000016603)	ENSLACG00000022177	KCNK6 (ENSLACG00000016730)	ENSLACG00000016768	LTBP4 (ENSLACG00000016869)	ENSLACG00000017469	YIF1B (ENSLACG00000017513)	ENSLACG00000017554	PINK1 (ENSLACG00000017697)
Tetrapoda	ANCESTRAL SPECIES	204													ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000161740	ENSGT00450000040421	ENSGT00390000017045	ENSGT00500000044869.a.b
Anura	ANCESTRAL SPECIES	86	ENSGT00940000175813	ENSGT00390000017608	ENSGT00940000161006.b	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000166395	ENSGT00940000160358	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000161740	ENSGT00450000040421	ENSGT00390000017045	ENSGT00500000044869.b	ENSGT01030000234517.F	ENSGT00940000154133.B	ENSGT00950000183135.A.a	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00390000018039	ENSGT00390000012948.a
Frog	MODERN SPECIES	8	ENSXETG00000018263	snrpd2 (ENSXETG00000002173)	pglyrp1 (ENSXETG00000018262)	qpctl (ENSXETG00000018261)	fbxo46 (ENSXETG00000047788)	gipr (ENSXETG00000018255)	eml1 (ENSXETG00000018242)	vasp (ENSXETG00000018239)	gpr4 (ENSXETG00000033328)	opa3 (ENSXETG00000018240)	rtn2 (ENSXETG00000024454)	fosb (ENSXETG00000035471)	ENSXETG00000039831	ppp1r13l (ENSXETG00000018235)	ercc2 (ENSXETG00000018229)	ckm (ENSXETG00000019108) ##22	ENSXETG00000037947	mark4 (ENSXETG00000019104)	exoc3l2 (ENSXETG00000040252)	nova2 (ENSXETG00000019101)	sympk (ENSXETG00000024453)	mypop (ENSXETG00000042112)	rsph6a (ENSXETG00000019096)	dmpk (ENSXETG00000026278)	ENSXETG00000048953	ENSXETG00000048929	ccdc61 (ENSXETG00000024452)	clptm1 (ENSXETG00000033140)	relb (ENSXETG00000031521)	ENSXETG00000034450	ppp1r37 (ENSXETG00000019084)
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000025546	ENSLLEG00000025522	ENSLLEG00000025452	EML2 (ENSLLEG00000025283)	GPR4 (ENSLLEG00000025247)	OPA3 (ENSLLEG00000025207)	VASP (ENSLLEG00000025032)	ENSLLEG00000024989	RTN2 (ENSLLEG00000024905)	ENSLLEG00000024588	FOSB (ENSLLEG00000024468)	ENSLLEG00000024432	PPP1R13L (ENSLLEG00000024038)	ERCC2 (ENSLLEG00000023926)	ENSLLEG00000023902	CKM (ENSLLEG00000023579) ##22	MARK4 (ENSLLEG00000023164)	ENSLLEG00000022901	ENSLLEG00000022829	MYPOP (ENSLLEG00000022786)	ENSLLEG00000022748	SYMPK (ENSLLEG00000021981)	ENSLLEG00000021857	ENSLLEG00000021328	ENSLLEG00000021180	NANOS2 (ENSLLEG00000021141)	CLPTM1 (ENSLLEG00000020915)	RELB (ENSLLEG00000020791)	ENSLLEG00000020767	PPP1R37 (ENSLLEG00000020642)	ENSLLEG00000020605
Amniota	ANCESTRAL SPECIES	34	ENSGT01100000263564.a	ENSGT00940000158721	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b
Mammalia	ANCESTRAL SPECIES	75	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B
Platypus	MODERN SPECIES	16	GPR4 (ENSOANG00000050364)	OPA3 (ENSOANG00000036874)	ENSOANG00000047387	ENSOANG00000050926	ENSOANG00000043601	ENSOANG00000038061	FOSB (ENSOANG00000047430)	SNRPD2 (ENSOANG00000000813)	ENSOANG00000049944	ENSOANG00000036797	ENSOANG00000041617	ENSOANG00000002088	ENSOANG00000006354	KLC3 (ENSOANG00000038764)	ENSOANG00000049426	CKM (ENSOANG00000000782) ##22	MARK4 (ENSOANG00000041059)	EXOC3L2 (ENSOANG00000050767)	ENSOANG00000013002	ENSOANG00000013001	PPP1R37 (ENSOANG00000049487)	GEMIN7 (ENSOANG00000008945)	ENSOANG00000043610	CLASRP (ENSOANG00000042693)	RELB (ENSOANG00000044083)	CLPTM1 (ENSOANG00000039979)	ENSOANG00000045516	ENSOANG00000020309	ENSOANG00000037534	ENSOANG00000019717	ENSOANG00000002747
Theria	ANCESTRAL SPECIES	27	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000011584	ENSGT00950000182929.B.b
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Diprotodontia	ANCESTRAL SPECIES	109										ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b
Diprotodontia_a	ANCESTRAL SPECIES	103										ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b
Common wonbat	MODERN SPECIES	1										FOSB (ENSVURG00010000002)	ENSVURG00010000003	ENSVURG00010000004	PPP1R13L (ENSVURG00010000005)	ERCC2 (ENSVURG00010000006)	KLC3 (ENSVURG00010000007)	CKM (ENSVURG00010000008) ##22	MARK4 (ENSVURG00010000009)	EXOC3L2 (ENSVURG00010000010)
koala	MODERN SPECIES	427										FOSB (ENSPCIG00000022951)	ENSPCIG00000022946	PPP1R13L (ENSPCIG00000022941)	ENSPCIG00000022939	ERCC2 (ENSPCIG00000022927)	KLC3 (ENSPCIG00000022923)	CKM (ENSPCIG00000010399) ##22	MARK4 (ENSPCIG00000010407)	EXOC3L2 (ENSPCIG00000010412)
Wallaby	MODERN SPECIES	10282																CKM (ENSMEUG00000011890) ##22
Tasmanian devil	MODERN SPECIES	2	DMPK (ENSSHAG00000000724)	SIX5 (ENSSHAG00000024498)	ENSSHAG00000001754	ENSSHAG00000028308	ENSSHAG00000023843	ENSSHAG00000029129	GIPR (ENSSHAG00000030736)	EML2 (ENSSHAG00000002041)	VASP (ENSSHAG00000003369)	RTN2 (ENSSHAG00000003830)	FOSB (ENSSHAG00000032198)	ENSSHAG00000003117	PPP1R13L (ENSSHAG00000002660)	ERCC2 (ENSSHAG00000002169)	KLC3 (ENSSHAG00000001691)	CKM (ENSSHAG00000002132) ##22	ENSSHAG00000002976	EXOC3L2 (ENSSHAG00000004086)	ENSSHAG00000004430	TRAPPC6A (ENSSHAG00000005027)	ENSSHAG00000026930	ENSSHAG00000022537	ENSSHAG00000032027	ENSSHAG00000005287	ENSSHAG00000020840	CLASRP (ENSSHAG00000029242)	RELB (ENSSHAG00000003442)	ENSSHAG00000024210	ENSSHAG00000001301	ENSSHAG00000026510	ENSSHAG00000004670
Opossum	MODERN SPECIES	427																CKM (ENSMODG00000051059) ##22	ENSMODG00000047890	ENSMODG00000050366	EXOC3L2 (ENSMODG00000010936)
Eutheria	ANCESTRAL SPECIES	29	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000011584	ENSGT00950000182929.B.b
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Tree shrew	MODERN SPECIES	5804																CKM (ENSTBEG00000000149) ##22	MARK4 (ENSTBEG00000000142)
Glires	ANCESTRAL SPECIES	6	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Rodentia	ANCESTRAL SPECIES	8	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Guinea pig	MODERN SPECIES	80	ENSCPOG00000035154	GIPR (ENSCPOG00000002438)	EML2 (ENSCPOG00000013465)	OPA3 (ENSCPOG00000035437)	VASP (ENSCPOG00000010236)	PPM1N (ENSCPOG00000034457)	RTN2 (ENSCPOG00000011382)	FOSB (ENSCPOG00000015608)	ERCC1 (ENSCPOG00000015606)	POLR1G (ENSCPOG00000033293)	ENSCPOG00000036376	PPP1R13L (ENSCPOG00000015602)	ERCC2 (ENSCPOG00000015600)	KLC3 (ENSCPOG00000015599)	ENSCPOG00000039314	CKM (ENSCPOG00000019609) ##22	MARK4 (ENSCPOG00000004117)	EXOC3L2 (ENSCPOG00000021579)	ENSCPOG00000024355	ENSCPOG00000020516	BLOC1S3 (ENSCPOG00000035473)	TRAPPC6A (ENSCPOG00000015115)	NKPD1 (ENSCPOG00000026614)	PPP1R37 (ENSCPOG00000006371)	GEMIN7 (ENSCPOG00000037844)	ZNF296 (ENSCPOG00000010291)	CLASRP (ENSCPOG00000010282)	RELB (ENSCPOG00000010273)	CLPTM1 (ENSCPOG00000010264)	APOC2 (ENSCPOG00000009302)	ENSCPOG00000009300
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Long-tailed chinchilla	MODERN SPECIES	262										FOSB (ENSCLAG00000001320)	ERCC1 (ENSCLAG00000004731)	POLR1G (ENSCLAG00000004691)	PPP1R13L (ENSCLAG00000004002)	ERCC2 (ENSCLAG00000002595)	KLC3 (ENSCLAG00000002431)	CKM (ENSCLAG00000002240) ##22	MARK4 (ENSCLAG00000002104)	EXOC3L2 (ENSCLAG00000002073)	ENSCLAG00000001896	BLOC1S3 (ENSCLAG00000002758)	TRAPPC6A (ENSCLAG00000002688)	NKPD1 (ENSCLAG00000002500)	PPP1R37 (ENSCLAG00000002455)	ZNF296 (ENSCLAG00000002406)	CLASRP (ENSCLAG00000002206)	RELB (ENSCLAG00000001435)	CLPTM1 (ENSCLAG00000001254)	ENSCLAG00000001239	APOC2 (ENSCLAG00000001142)	ENSCLAG00000001127	APOE (ENSCLAG00000001528)
Degu	MODERN SPECIES	238	QPCTL (ENSODEG00000012513)	ENSODEG00000008857	GIPR (ENSODEG00000010030)	EML2 (ENSODEG00000007963)	GPR4 (ENSODEG00000019587)	OPA3 (ENSODEG00000009423)	VASP (ENSODEG00000007915)	PPM1N (ENSODEG00000009338)	RTN2 (ENSODEG00000007986)	FOSB (ENSODEG00000009394)	ERCC1 (ENSODEG00000007322)	POLR1G (ENSODEG00000007587)	PPP1R13L (ENSODEG00000008375)	ERCC2 (ENSODEG00000008340)	KLC3 (ENSODEG00000009706)	CKM (ENSODEG00000008279) ##22	MARK4 (ENSODEG00000012545)	EXOC3L2 (ENSODEG00000009155)	TRAPPC6A (ENSODEG00000008693)	NKPD1 (ENSODEG00000008357)	PPP1R37 (ENSODEG00000008101)	GEMIN7 (ENSODEG00000009107)	ZNF296 (ENSODEG00000008238)	CLASRP (ENSODEG00000008407)	RELB (ENSODEG00000008207)	CLPTM1 (ENSODEG00000008066)	APOC2 (ENSODEG00000008478)	ENSODEG00000011088	ENSODEG00000010383	APOE (ENSODEG00000008747)	ENSODEG00000010615
Naked mole-rat female	MODERN SPECIES	21	GPR4 (ENSHGLG00000036046)	OPA3 (ENSHGLG00000016016)	VASP (ENSHGLG00000018306)	ENSHGLG00000041051	ENSHGLG00000033452	ENSHGLG00000042028	RTN2 (ENSHGLG00000002943)	FOSB (ENSHGLG00000004044)	ERCC1 (ENSHGLG00000003045)	POLR1G (ENSHGLG00000002795)	PPP1R13L (ENSHGLG00000002359)	ERCC2 (ENSHGLG00000018685)	KLC3 (ENSHGLG00000003781)	ENSHGLG00000003471	ENSHGLG00000003316	ENSHGLG00000002629 ##22	ENSHGLG00000003636	ENSHGLG00000003068	ENSHGLG00000042272	ENSHGLG00000011476	CYP2S1 (ENSHGLG00000005323)	AXL (ENSHGLG00000018919)	HNRNPUL1 (ENSHGLG00000007171)	CCDC97 (ENSHGLG00000035865)	TGFB1 (ENSHGLG00000007211)	B9D2 (ENSHGLG00000005896)	TMEM91 (ENSHGLG00000036227)	EXOSC5 (ENSHGLG00000008975)	BCKDHA (ENSHGLG00000050952)	B3GNT8 (ENSHGLG00000010364)	ERICH4 (ENSHGLG00000048703)
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C.t	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Marmotini	ANCESTRAL SPECIES	7	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C.t	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Marmotini_b	ANCESTRAL SPECIES	49	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C.t	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Squirrel	MODERN SPECIES	306	QPCTL (ENSSTOG00000013895)	SNRPD2 (ENSSTOG00000024377)	GIPR (ENSSTOG00000028727)	EML2 (ENSSTOG00000013316)	GPR4 (ENSSTOG00000022015)	OPA3 (ENSSTOG00000029170)	VASP (ENSSTOG00000027705)	PPM1N (ENSSTOG00000002827)	RTN2 (ENSSTOG00000002816)	FOSB (ENSSTOG00000028949)	ERCC1 (ENSSTOG00000002805)	POLR1G (ENSSTOG00000002799)	PPP1R13L (ENSSTOG00000001130)	ERCC2 (ENSSTOG00000001106)	KLC3 (ENSSTOG00000020494)	CKM (ENSSTOG00000011537) ##22	MARK4 (ENSSTOG00000011531)	ENSSTOG00000011523	TRAPPC6A (ENSSTOG00000009152)	BLOC1S3 (ENSSTOG00000033740)	NKPD1 (ENSSTOG00000027698)	PPP1R37 (ENSSTOG00000025282)	GEMIN7 (ENSSTOG00000033006)	ZNF296 (ENSSTOG00000023578)	CLASRP (ENSSTOG00000009069)	RELB (ENSSTOG00000009056)	ENSSTOG00000032770	CLPTM1 (ENSSTOG00000009031)	ENSSTOG00000009019	NECTIN2 (ENSSTOG00000008997)	BCAM (ENSSTOG00000021794)
Arctic ground squirrel	MODERN SPECIES	297	QPCTL (ENSUPAG00010021602)	SNRPD2 (ENSUPAG00010021605)	GIPR (ENSUPAG00010021609)	EML2 (ENSUPAG00010021623)	GPR4 (ENSUPAG00010021640)	OPA3 (ENSUPAG00010021642)	VASP (ENSUPAG00010021647)	PPM1N (ENSUPAG00010021657)	RTN2 (ENSUPAG00010021664)	FOSB (ENSUPAG00010021666)	ERCC1 (ENSUPAG00010021686)	POLR1G (ENSUPAG00010021691)	PPP1R13L (ENSUPAG00010021693)	ERCC2 (ENSUPAG00010021698)	KLC3 (ENSUPAG00010021708)	CKM (ENSUPAG00010021720) ##22	MARK4 (ENSUPAG00010021726)	EXOC3L2 (ENSUPAG00010021737)	BLOC1S3 (ENSUPAG00010021749)	TRAPPC6A (ENSUPAG00010021751)	NKPD1 (ENSUPAG00010021755)	PPP1R37 (ENSUPAG00010021758)	GEMIN7 (ENSUPAG00010021768)	ZNF296 (ENSUPAG00010021770)	CLASRP (ENSUPAG00010021771)	RELB (ENSUPAG00010021774)	CLPTM1 (ENSUPAG00010021781)	ENSUPAG00010021782	ENSUPAG00010021784	APOC1 (ENSUPAG00010021785)	APOE (ENSUPAG00010021788)
Alpin marmot	MODERN SPECIES	45	QPCTL (ENSMMMG00000014131)	ENSMMMG00000014144	GIPR (ENSMMMG00000014147)	EML2 (ENSMMMG00000014164)	GPR4 (ENSMMMG00000014230)	OPA3 (ENSMMMG00000014232)	VASP (ENSMMMG00000014235)	ENSMMMG00000014265	RTN2 (ENSMMMG00000014268)	FOSB (ENSMMMG00000014298)	ERCC1 (ENSMMMG00000014315)	POLR1G (ENSMMMG00000014326)	ENSMMMG00000014331	ERCC2 (ENSMMMG00000014338)	KLC3 (ENSMMMG00000014476)	CKM (ENSMMMG00000014494) ##22	MARK4 (ENSMMMG00000014510)	ENSMMMG00000014559	BLOC1S3 (ENSMMMG00000014569)	TRAPPC6A (ENSMMMG00000014570)	PPP1R37 (ENSMMMG00000014623)	GEMIN7 (ENSMMMG00000014641)	ZNF296 (ENSMMMG00000014656)	CLASRP (ENSMMMG00000014675)	ENSMMMG00000014707	CLPTM1 (ENSMMMG00000014731)	ENSMMMG00000014736	APOC1 (ENSMMMG00000014747)	ENSMMMG00000014754	TOMM40 (ENSMMMG00000014766)	NECTIN2 (ENSMMMG00000014773)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005023631	GIPR (ENSSVLG00005023358)	EML2 (ENSSVLG00005023025)	GPR4 (ENSSVLG00005022943)	OPA3 (ENSSVLG00005022913)	VASP (ENSSVLG00005022815)	PPM1N (ENSSVLG00005022665)	RTN2 (ENSSVLG00005022524)	FOSB (ENSSVLG00005022289)	ERCC1 (ENSSVLG00005022100)	POLR1G (ENSSVLG00005022037)	PPP1R13L (ENSSVLG00005021997)	ERCC2 (ENSSVLG00005021679)	KLC3 (ENSSVLG00005021449)	ENSSVLG00005021426	CKM (ENSSVLG00005021360) ##22	ENSSVLG00005021273	EXOC3L2 (ENSSVLG00005021070)	BLOC1S3 (ENSSVLG00005021043)	TRAPPC6A (ENSSVLG00005020976)	NKPD1 (ENSSVLG00005020950)	PPP1R37 (ENSSVLG00005020898)	GEMIN7 (ENSSVLG00005020878)	ZNF296 (ENSSVLG00005020812)	CLASRP (ENSSVLG00005020689)	RELB (ENSSVLG00005020581)	CLPTM1 (ENSSVLG00005020445)	APOC2 (ENSSVLG00005020338)	ENSSVLG00005020271	ENSSVLG00005020178	APOE (ENSSVLG00005020139)
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Muroidea	ANCESTRAL SPECIES	18	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Cricetidae	ANCESTRAL SPECIES	29	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Cricetinae	ANCESTRAL SPECIES	42	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Chinese hamster chok1gshd	MODERN SPECIES	328	Fbxo46 (ENSCGRG00001014313)	Qpctl (ENSCGRG00001000786)	Gipr (ENSCGRG00001000434)	Eml2 (ENSCGRG00001001692)	Gpr4 (ENSCGRG00001013541)	Opa3 (ENSCGRG00001016230)	Vasp (ENSCGRG00001008576)	Ppm1n (ENSCGRG00001001627)	Rtn2 (ENSCGRG00001023308)	Fosb (ENSCGRG00001009723)	Ercc1 (ENSCGRG00001000712)	Polr1g (ENSCGRG00001023584)	Ppp1r13l (ENSCGRG00001020832)	Ercc2 (ENSCGRG00001013953)	Klc3 (ENSCGRG00001022712)	Ckm (ENSCGRG00001017465) ##22	Mark4 (ENSCGRG00001017090)	ENSCGRG00001015530	Bloc1s3 (ENSCGRG00001015521)	Trappc6a (ENSCGRG00001002017)	Nkpd1 (ENSCGRG00001019267)	Ppp1r37 (ENSCGRG00001000178)	Gemin7 (ENSCGRG00001013306)	Zfp296 (ENSCGRG00001015680)	Clasrp (ENSCGRG00001015861)	Relb (ENSCGRG00001007750)	Clptm1 (ENSCGRG00001010928)	Apoc2 (ENSCGRG00001005778)	Apoc4 (ENSCGRG00001017401)	Apoc1 (ENSCGRG00001017299)	Apoe (ENSCGRG00001017152)
Golden Hamster	MODERN SPECIES	834	Fbxo46 (ENSMAUG00000019697)	Qpctl (ENSMAUG00000014498)	Snrpd2 (ENSMAUG00000018849)	Gipr (ENSMAUG00000021032)	Eml2 (ENSMAUG00000016205)	Opa3 (ENSMAUG00000015768)	Vasp (ENSMAUG00000018921)	Ppm1n (ENSMAUG00000011353)	ENSMAUG00000018994	Fosb (ENSMAUG00000000999)	Ercc1 (ENSMAUG00000014855)	Polr1g (ENSMAUG00000007876)	Ppp1r13l (ENSMAUG00000020292)	Ercc2 (ENSMAUG00000000724)	Klc3 (ENSMAUG00000017859)	Ckm (ENSMAUG00000009932) ##22	ENSMAUG00000020514	Mark4 (ENSMAUG00000009989)	Exoc3l2 (ENSMAUG00000019204)	Bloc1s3 (ENSMAUG00000014366)	Trappc6a (ENSMAUG00000017280)	Nkpd1 (ENSMAUG00000006604)	Ppp1r37 (ENSMAUG00000008592)	Gemin7 (ENSMAUG00000018897)	Zfp296 (ENSMAUG00000019561)	Clasrp (ENSMAUG00000000378)	ENSMAUG00000017092	Clptm1 (ENSMAUG00000004399)	Apoc2 (ENSMAUG00000014292)	Apoc4 (ENSMAUG00000019705)	Apoc1 (ENSMAUG00000020478)
Cricetidae_B	ANCESTRAL SPECIES	41	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Prairie vole	MODERN SPECIES	157	Qpctl (ENSMOCG00000015780)	Snrpd2 (ENSMOCG00000017080)	Gipr (ENSMOCG00000015992)	Eml2 (ENSMOCG00000013139)	Gpr4 (ENSMOCG00000001007)	Opa3 (ENSMOCG00000013947)	Vasp (ENSMOCG00000001451)	Ppm1n (ENSMOCG00000011572)	ENSMOCG00000018978	Fosb (ENSMOCG00000001596)	Ercc1 (ENSMOCG00000012206)	Polr1g (ENSMOCG00000013766)	Ppp1r13l (ENSMOCG00000001158)	Ercc2 (ENSMOCG00000013611)	Klc3 (ENSMOCG00000003970)	Ckm (ENSMOCG00000020442) ##22	Mark4 (ENSMOCG00000006161)	Exoc3l2 (ENSMOCG00000003076)	Bloc1s3 (ENSMOCG00000000204)	Trappc6a (ENSMOCG00000013206)	Nkpd1 (ENSMOCG00000000052)	Ppp1r37 (ENSMOCG00000009307)	Gemin7 (ENSMOCG00000019633)	Zfp296 (ENSMOCG00000000338)	Clasrp (ENSMOCG00000007548)	Relb (ENSMOCG00000003754)	Clptm1 (ENSMOCG00000015665)	Apoc2 (ENSMOCG00000010632)	Apoc4 (ENSMOCG00000015539)	Apoc1 (ENSMOCG00000010879)	Apoe (ENSMOCG00000001633)
Northern American deer mouse	MODERN SPECIES		Snrpd2 (ENSPEMG00000004117)	Gipr (ENSPEMG00000014106)	Eml2 (ENSPEMG00000008721)	Gpr4 (ENSPEMG00000000584)	Opa3 (ENSPEMG00000024608)	Vasp (ENSPEMG00000001352)	Ppm1n (ENSPEMG00000014264)	Rtn2 (ENSPEMG00000012056)	Fosb (ENSPEMG00000016150)	Ercc1 (ENSPEMG00000000638)	Polr1g (ENSPEMG00000018578)	Ppp1r13l (ENSPEMG00000007393)	Ercc2 (ENSPEMG00000008225)	Klc3 (ENSPEMG00000014005)	ENSPEMG00000019188	Ckm (ENSPEMG00000013369) ##22	Mark4 (ENSPEMG00000013793)	Exoc3l2 (ENSPEMG00000016910)	Trappc6a (ENSPEMG00000018919)	Nkpd1 (ENSPEMG00000010558)	Ppp1r37 (ENSPEMG00000001005)	Gemin7 (ENSPEMG00000003653)	Zfp296 (ENSPEMG00000008067)	Clasrp (ENSPEMG00000017845)	Relb (ENSPEMG00000017792)	Clptm1 (ENSPEMG00000000759)	Apoc2 (ENSPEMG00000017266)	Apoc4 (ENSPEMG00000008327)	ENSPEMG00000010767	Apoe (ENSPEMG00000011447)	Tomm40 (ENSPEMG00000018119)
Murinae	ANCESTRAL SPECIES	19	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mus	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mus_B	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mouse	MODERN SPECIES	16	Qpctl (ENSMUSG00000030407)	Snrpd2 (ENSMUSG00000040824)	Gipr (ENSMUSG00000030406)	Eml2 (ENSMUSG00000040811)	Gpr4 (ENSMUSG00000044317)	Opa3 (ENSMUSG00000052214)	Vasp (ENSMUSG00000030403)	Ppm1n (ENSMUSG00000030402)	Rtn2 (ENSMUSG00000030401)	Fosb (ENSMUSG00000003545)	Ercc1 (ENSMUSG00000003549)	Polr1g (ENSMUSG00000047649)	Ppp1r13l (ENSMUSG00000040734)	Ercc2 (ENSMUSG00000030400)	Klc3 (ENSMUSG00000040714)	Ckm (ENSMUSG00000030399) ##22	Mark4 (ENSMUSG00000030397)	Exoc3l2 (ENSMUSG00000011263)	Bloc1s3 (ENSMUSG00000057667)	Trappc6a (ENSMUSG00000002043)	Nkpd1 (ENSMUSG00000060621)	Ppp1r37 (ENSMUSG00000051403)	Gemin7 (ENSMUSG00000044709)	Zfp296 (ENSMUSG00000011267)	Clasrp (ENSMUSG00000061028)	Relb (ENSMUSG00000002983)	Clptm1 (ENSMUSG00000002981)	Apoc2 (ENSMUSG00000002992)	Apoc2l (ENSMUSG00000109350)	Apoc4 (ENSMUSG00000074336)	Apoc1 (ENSMUSG00000040564)
Mus_C	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
spretus	MODERN SPECIES	16	Qpctl (MGP_SPRETEiJ_G0030358)	MGP_SPRETEiJ_G0030359	Gipr (MGP_SPRETEiJ_G0030360)	Eml2 (MGP_SPRETEiJ_G0030361)	Gpr4 (MGP_SPRETEiJ_G0030362)	Opa3 (MGP_SPRETEiJ_G0030363)	Vasp (MGP_SPRETEiJ_G0030364)	Ppm1n (MGP_SPRETEiJ_G0030365)	Rtn2 (MGP_SPRETEiJ_G0030366)	Fosb (MGP_SPRETEiJ_G0030367)	Ercc1 (MGP_SPRETEiJ_G0030368)	Polr1g (MGP_SPRETEiJ_G0030369)	Ppp1r13l (MGP_SPRETEiJ_G0030370)	Ercc2 (MGP_SPRETEiJ_G0030371)	Klc3 (MGP_SPRETEiJ_G0030372)	Ckm (MGP_SPRETEiJ_G0030373) ##22	MGP_SPRETEiJ_G0030374	Mark4 (MGP_SPRETEiJ_G0030375)	Exoc3l2 (MGP_SPRETEiJ_G0030376)	Bloc1s3 (MGP_SPRETEiJ_G0030377)	Trappc6a (MGP_SPRETEiJ_G0030378)	Nkpd1 (MGP_SPRETEiJ_G0030379)	Ppp1r37 (MGP_SPRETEiJ_G0030380)	Gemin7 (MGP_SPRETEiJ_G0030381)	Zfp296 (MGP_SPRETEiJ_G0030382)	Clasrp (MGP_SPRETEiJ_G0030383)	Relb (MGP_SPRETEiJ_G0030384)	Clptm1 (MGP_SPRETEiJ_G0030385)	Apoc2 (MGP_SPRETEiJ_G0030386)	Apoc4 (MGP_SPRETEiJ_G0030387)	Apoc1 (MGP_SPRETEiJ_G0030388)
Steppe mouse	MODERN SPECIES	2900	Qpctl (ENSMSIG00000005068)	Snrpd2 (ENSMSIG00000005096)	Gipr (ENSMSIG00000005108)	Eml2 (ENSMSIG00000005175)	Gpr4 (ENSMSIG00000005462)	Opa3 (ENSMSIG00000005466)	Vasp (ENSMSIG00000005496)	Ppm1n (ENSMSIG00000005528)	Rtn2 (ENSMSIG00000005554)	Fosb (ENSMSIG00000005600)	Ercc1 (ENSMSIG00000005763)	Polr1g (ENSMSIG00000005787)	Ppp1r13l (ENSMSIG00000005801)	Ercc2 (ENSMSIG00000005841)	Klc3 (ENSMSIG00000006063)	Ckm (ENSMSIG00000006180) ##22	Mark4 (ENSMSIG00000006221)	Exoc3l2 (ENSMSIG00000006372)	Bloc1s3 (ENSMSIG00000006464)	ENSMSIG00000006473	Nkpd1 (ENSMSIG00000006532)	Ppp1r37 (ENSMSIG00000006586)	Gemin7 (ENSMSIG00000006656)	Zfp296 (ENSMSIG00000006673)	Clasrp (ENSMSIG00000006696)	Relb (ENSMSIG00000006878)	Clptm1 (ENSMSIG00000007105)	Apoc2 (ENSMSIG00000007132)	Apoc4 (ENSMSIG00000007155)	Apoc1 (ENSMSIG00000007168)	Apoe (ENSMSIG00000007187)
Ryukyu mouse	MODERN SPECIES	16	Qpctl (MGP_CAROLIEiJ_G0029274)	Snrpd2 (MGP_CAROLIEiJ_G0029275)	Gipr (MGP_CAROLIEiJ_G0029276)	Eml2 (MGP_CAROLIEiJ_G0029277)	Gpr4 (MGP_CAROLIEiJ_G0029278)	Opa3 (MGP_CAROLIEiJ_G0029279)	Vasp (MGP_CAROLIEiJ_G0029280)	Ppm1n (MGP_CAROLIEiJ_G0029281)	Rtn2 (MGP_CAROLIEiJ_G0029282)	Fosb (MGP_CAROLIEiJ_G0029283)	Ercc1 (MGP_CAROLIEiJ_G0029284)	Polr1g (MGP_CAROLIEiJ_G0029285)	Ppp1r13l (MGP_CAROLIEiJ_G0029286)	Ercc2 (MGP_CAROLIEiJ_G0029287)	Klc3 (MGP_CAROLIEiJ_G0029288)	Ckm (MGP_CAROLIEiJ_G0029289) ##22	MGP_CAROLIEiJ_G0029290	Mark4 (MGP_CAROLIEiJ_G0029291)	Exoc3l2 (MGP_CAROLIEiJ_G0029292)	Bloc1s3 (MGP_CAROLIEiJ_G0029293)	MGP_CAROLIEiJ_G0029294	Nkpd1 (MGP_CAROLIEiJ_G0029295)	Ppp1r37 (MGP_CAROLIEiJ_G0029296)	Gemin7 (MGP_CAROLIEiJ_G0029297)	Zfp296 (MGP_CAROLIEiJ_G0029298)	Clasrp (MGP_CAROLIEiJ_G0029299)	Relb (MGP_CAROLIEiJ_G0029300)	Clptm1 (MGP_CAROLIEiJ_G0029301)	Apoc2 (MGP_CAROLIEiJ_G0029302)	Apoc4 (MGP_CAROLIEiJ_G0029303)	Apoc1 (MGP_CAROLIEiJ_G0029304)
Shrew mouse	MODERN SPECIES	10	Fbxo46 (MGP_PahariEiJ_G0021133)	Qpctl (MGP_PahariEiJ_G0021134)	Snrpd2 (MGP_PahariEiJ_G0021135)	Gipr (MGP_PahariEiJ_G0021136)	Eml2 (MGP_PahariEiJ_G0021137)	Gpr4 (MGP_PahariEiJ_G0021138)	Opa3 (MGP_PahariEiJ_G0021139)	Vasp (MGP_PahariEiJ_G0021140)	Ppm1n (MGP_PahariEiJ_G0021141)	Rtn2 (MGP_PahariEiJ_G0021142)	Fosb (MGP_PahariEiJ_G0021143)	Ercc1 (MGP_PahariEiJ_G0021144)	Ppp1r13l (MGP_PahariEiJ_G0021146)	Ercc2 (MGP_PahariEiJ_G0021147)	Klc3 (MGP_PahariEiJ_G0021148)	Ckm (MGP_PahariEiJ_G0021149) ##22	MGP_PahariEiJ_G0021150	Mark4 (MGP_PahariEiJ_G0021151)	Exoc3l2 (MGP_PahariEiJ_G0021152)	Bloc1s3 (MGP_PahariEiJ_G0021153)	MGP_PahariEiJ_G0021154	Nkpd1 (MGP_PahariEiJ_G0021155)	Ppp1r37 (MGP_PahariEiJ_G0021156)	Gemin7 (MGP_PahariEiJ_G0021157)	Zfp296 (MGP_PahariEiJ_G0021158)	Clasrp (MGP_PahariEiJ_G0021159)	Relb (MGP_PahariEiJ_G0021160)	Clptm1 (MGP_PahariEiJ_G0021161)	MGP_PahariEiJ_G0021162	Apoc4 (MGP_PahariEiJ_G0021163)	Apoc1 (MGP_PahariEiJ_G0021164)
Rat	MODERN SPECIES		Snrpd2 (ENSRNOG00000015844)	Gipr (ENSRNOG00000015860)	Eml2 (ENSRNOG00000030127)	Gpr4 (ENSRNOG00000016362)	Opa3 (ENSRNOG00000025890)	Opa3 (ENSRNOG00000064373)	Vasp (ENSRNOG00000016367)	Ppm1n (ENSRNOG00000058133)	Rtn2 (ENSRNOG00000016603)	Fosb (ENSRNOG00000046667)	Ercc1 (ENSRNOG00000017839)	Polr1g (ENSRNOG00000016825)	Ppp1r13l (ENSRNOG00000025350)	Ercc2 (ENSRNOG00000017753)	Klc3 (ENSRNOG00000018101)	Ckm (ENSRNOG00000016837) ##22	Mark4 (ENSRNOG00000017069)	Exoc3l2 (ENSRNOG00000017448)	Bloc1s3 (ENSRNOG00000017463)	Trappc6a (ENSRNOG00000017468)	Nkpd1 (ENSRNOG00000043378)	Ppp1r37 (ENSRNOG00000017692)	Gemin7 (ENSRNOG00000049772)	Zfp296 (ENSRNOG00000049605)	Clasrp (ENSRNOG00000046000)	Relb (ENSRNOG00000033235)	Clptm1 (ENSRNOG00000018255)	Apoc2 (ENSRNOG00000018402)	Apoc4 (ENSRNOG00000018405)	Apoc1 (ENSRNOG00000018426)	Apoe (ENSRNOG00000018454)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1616	Fbxo46 (ENSNGAG00000017717)	Qpctl (ENSNGAG00000012368)	ENSNGAG00000010411	Gipr (ENSNGAG00000014088)	Eml2 (ENSNGAG00000016674)	Gpr4 (ENSNGAG00000009194)	Opa3 (ENSNGAG00000015660)	Vasp (ENSNGAG00000012981)	Rtn2 (ENSNGAG00000001176)	Fosb (ENSNGAG00000020712)	Ercc1 (ENSNGAG00000018219)	Polr1g (ENSNGAG00000015313)	Ppp1r13l (ENSNGAG00000000621)	Ercc2 (ENSNGAG00000017688)	Klc3 (ENSNGAG00000007710)	Ckm (ENSNGAG00000000066) ##22	Mark4 (ENSNGAG00000012653)	Exoc3l2 (ENSNGAG00000020966)	Bloc1s3 (ENSNGAG00000013200)	Trappc6a (ENSNGAG00000018159)	Nkpd1 (ENSNGAG00000015014)	Ppp1r37 (ENSNGAG00000010843)	Gemin7 (ENSNGAG00000018443)	Zfp296 (ENSNGAG00000010996)	Clasrp (ENSNGAG00000016249)	ENSNGAG00000012950	Clptm1 (ENSNGAG00000003363)	ENSNGAG00000000307	Apoc2 (ENSNGAG00000019759)	Apoc4 (ENSNGAG00000015603)	Apoc1 (ENSNGAG00000019714)
Lesser Egyptian jerboa	MODERN SPECIES	186	Apoc2 (ENSJJAG00000017546)	Clptm1 (ENSJJAG00000017147)	Relb (ENSJJAG00000016298)	ENSJJAG00000016124	Zfp296 (ENSJJAG00000015875)	Ppp1r37 (ENSJJAG00000015339)	ENSJJAG00000014876	Nkpd1 (ENSJJAG00000014468)	ENSJJAG00000014225	Fosb (ENSJJAG00000013651)	ENSJJAG00000013425	Polr1g (ENSJJAG00000013173)	Ppp1r13l (ENSJJAG00000011946)	Ercc2 (ENSJJAG00000006595)	Klc3 (ENSJJAG00000022201)	Ckm (ENSJJAG00000021725) ##22	Mark4 (ENSJJAG00000021555)
Kangaroo rat	MODERN SPECIES	475	Six5 (ENSDORG00000026570)	Fbxo46 (ENSDORG00000029689)	Qpctl (ENSDORG00000001733)	Gipr (ENSDORG00000001717)	Eml2 (ENSDORG00000008122)	Opa3 (ENSDORG00000024215)	Vasp (ENSDORG00000008121)	Ppm1n (ENSDORG00000008119)	Rtn2 (ENSDORG00000008114)	Fosb (ENSDORG00000008112)	Ercc1 (ENSDORG00000007999)	ENSDORG00000027052	Ppp1r13l (ENSDORG00000008001)	Ercc2 (ENSDORG00000008002)	Klc3 (ENSDORG00000008004)	Ckm (ENSDORG00000013288) ##22	ENSDORG00000023785	Mark4 (ENSDORG00000013282)	Exoc3l2 (ENSDORG00000009068)	Trappc6a (ENSDORG00000003457)	Nkpd1 (ENSDORG00000027401)	Ppp1r37 (ENSDORG00000003452)	Zfp296 (ENSDORG00000003451)	Clasrp (ENSDORG00000003450)	Gemin7 (ENSDORG00000027339)	Relb (ENSDORG00000003448)	Clptm1 (ENSDORG00000003446)	Apoc2 (ENSDORG00000027051)	Apoc4 (ENSDORG00000016144)	Apoc1 (ENSDORG00000003582)	Apoe (ENSDORG00000003581)
Lagomorpha	ANCESTRAL SPECIES	178		ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00980000200098	ENSGT00450000040362	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b
Rabbit	MODERN SPECIES	736			QPCTL (ENSOCUG00000016066)	SNRPD2 (ENSOCUG00000022402)	GIPR (ENSOCUG00000011885)	EML2 (ENSOCUG00000021801)	GPR4 (ENSOCUG00000037302)	OPA3 (ENSOCUG00000007949)	ENSOCUG00000026899	PPM1N (ENSOCUG00000024100)	RTN2 (ENSOCUG00000023342)	FOSB (ENSOCUG00000023019)	ENSOCUG00000024047	ENSOCUG00000025376	ERCC2 (ENSOCUG00000025269)	CKM (ENSOCUG00000027154) ##22	ENSOCUG00000024723
Primates	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00960000192363	ENSGT00950000182929.B.b
Coquerels sifaka	MODERN SPECIES	568	QPCTL (ENSPCOG00000018844)	SNRPD2 (ENSPCOG00000028811)	GIPR (ENSPCOG00000021969)	EML2 (ENSPCOG00000018079)	GPR4 (ENSPCOG00000000191)	OPA3 (ENSPCOG00000017860)	VASP (ENSPCOG00000013513)	PPM1N (ENSPCOG00000022242)	RTN2 (ENSPCOG00000004285)	FOSB (ENSPCOG00000008886)	ERCC1 (ENSPCOG00000028786)	POLR1G (ENSPCOG00000028780)	PPP1R13L (ENSPCOG00000022581)	ERCC2 (ENSPCOG00000016671)	KLC3 (ENSPCOG00000019370)	CKM (ENSPCOG00000025111) ##22	MARK4 (ENSPCOG00000027851)	EXOC3L2 (ENSPCOG00000017537)	TRAPPC6A (ENSPCOG00000022562)	NKPD1 (ENSPCOG00000020220)	PPP1R37 (ENSPCOG00000021765)	ZNF296 (ENSPCOG00000017587)	CLASRP (ENSPCOG00000018016)	RELB (ENSPCOG00000013127)	CLPTM1 (ENSPCOG00000022928)	APOC2 (ENSPCOG00000026300)	APOC4 (ENSPCOG00000019360)	ENSPCOG00000017937	APOE (ENSPCOG00000016579)	TOMM40 (ENSPCOG00000015079)	NECTIN2 (ENSPCOG00000020498)
Greater bamboo lemur	MODERN SPECIES	79	QPCTL (ENSPSMG00000024775)	ENSPSMG00000024780	GIPR (ENSPSMG00000024806)	EML2 (ENSPSMG00000024861)	GPR4 (ENSPSMG00000024886)	OPA3 (ENSPSMG00000024888)	VASP (ENSPSMG00000024889)	PPM1N (ENSPSMG00000024901)	RTN2 (ENSPSMG00000024946)	FOSB (ENSPSMG00000024967)	ERCC1 (ENSPSMG00000024982)	POLR1G (ENSPSMG00000024991)	PPP1R13L (ENSPSMG00000025002)	ERCC2 (ENSPSMG00000025033)	KLC3 (ENSPSMG00000025052)	CKM (ENSPSMG00000025058) ##22	MARK4 (ENSPSMG00000025099)	EXOC3L2 (ENSPSMG00000025111)	TRAPPC6A (ENSPSMG00000025115)	BLOC1S3 (ENSPSMG00000025117)	NKPD1 (ENSPSMG00000025121)	PPP1R37 (ENSPSMG00000025125)	ENSPSMG00000025129	ZNF296 (ENSPSMG00000025135)	CLASRP (ENSPSMG00000025177)	RELB (ENSPSMG00000025196)	CLPTM1 (ENSPSMG00000025217)	APOC2 (ENSPSMG00000025228)	APOC4 (ENSPSMG00000025229)	ENSPSMG00000025234	APOE (ENSPSMG00000025250)
Mouse lemur	MODERN SPECIES	14	QPCTL (ENSMICG00000001842)	SNRPD2 (ENSMICG00000031545)	GIPR (ENSMICG00000001830)	EML2 (ENSMICG00000001822)	GPR4 (ENSMICG00000046993)	OPA3 (ENSMICG00000046590)	VASP (ENSMICG00000044750)	PPM1N (ENSMICG00000029291)	RTN2 (ENSMICG00000003139)	FOSB (ENSMICG00000001809)	ERCC1 (ENSMICG00000001806)	POLR1G (ENSMICG00000031258)	PPP1R13L (ENSMICG00000001794)	ERCC2 (ENSMICG00000000635)	KLC3 (ENSMICG00000000630)	CKM (ENSMICG00000000625) ##22	MARK4 (ENSMICG00000000621)	EXOC3L2 (ENSMICG00000031664)	TRAPPC6A (ENSMICG00000002475)	NKPD1 (ENSMICG00000030601)	PPP1R37 (ENSMICG00000007018)	ZNF296 (ENSMICG00000007012)	CLASRP (ENSMICG00000006996)	RELB (ENSMICG00000006991)	CLPTM1 (ENSMICG00000006981)	APOC2 (ENSMICG00000030597)	APOC4 (ENSMICG00000034209)	ENSMICG00000045015	APOE (ENSMICG00000031968)	TOMM40 (ENSMICG00000014041)	NECTIN2 (ENSMICG00000014030)
Bushbaby	MODERN SPECIES	267	QPCTL (ENSOGAG00000003952)	SNRPD2 (ENSOGAG00000030128)	GIPR (ENSOGAG00000012568)	EML2 (ENSOGAG00000033974)	GPR4 (ENSOGAG00000029132)	OPA3 (ENSOGAG00000033310)	VASP (ENSOGAG00000011276)	PPM1N (ENSOGAG00000033341)	RTN2 (ENSOGAG00000033252)	FOSB (ENSOGAG00000013790)	ERCC1 (ENSOGAG00000030471)	POLR1G (ENSOGAG00000013782)	PPP1R13L (ENSOGAG00000013774)	ERCC2 (ENSOGAG00000007834)	KLC3 (ENSOGAG00000027807)	CKM (ENSOGAG00000007832) ##22	MARK4 (ENSOGAG00000011279)	ENSOGAG00000002937	TRAPPC6A (ENSOGAG00000033611)	NKPD1 (ENSOGAG00000032471)	PPP1R37 (ENSOGAG00000027337)	GEMIN7 (ENSOGAG00000014987)	ENSOGAG00000025116	CLASRP (ENSOGAG00000034160)	RELB (ENSOGAG00000012777)	CLPTM1 (ENSOGAG00000012773)	APOC4 (ENSOGAG00000012770)	APOC1 (ENSOGAG00000028159)	APOE (ENSOGAG00000016031)	ENSOGAG00000012769	NECTIN2 (ENSOGAG00000012765)
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Tarsier	MODERN SPECIES	1118											PTHLH (ENSTSYG00000007775)	KLHL42 (ENSTSYG00000003823)	MANSC4 (ENSTSYG00000003843)	MRPS35 (ENSTSYG00000003293)	PPFIBP1 (ENSTSYG00000010809)	CKM (ENSTSYG00000027885) ##22	MARK4 (ENSTSYG00000034683)
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Cebidae	ANCESTRAL SPECIES	8	ENSGT00390000003107.b	ENSGT00390000017608.b.nb.d	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765.k	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00390000017608.b.nb.c.b	ENSGT00390000017608.b.nb.d	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765.k	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Capuchin	MODERN SPECIES	296	QPCTL (ENSCCAG00000006394)	SNRPD2 (ENSCCAG00000035396)	GIPR (ENSCCAG00000026591)	EML2 (ENSCCAG00000030345)	GPR4 (ENSCCAG00000014726)	OPA3 (ENSCCAG00000027564)	ENSCCAG00000029400	PPM1N (ENSCCAG00000033653)	RTN2 (ENSCCAG00000029809)	FOSB (ENSCCAG00000025333)	ERCC1 (ENSCCAG00000019653)	POLR1G (ENSCCAG00000024253)	PPP1R13L (ENSCCAG00000033595)	ERCC2 (ENSCCAG00000019831)	KLC3 (ENSCCAG00000023117)	CKM (ENSCCAG00000021924) ##22	MARK4 (ENSCCAG00000032781)	EXOC3L2 (ENSCCAG00000019683)	BLOC1S3 (ENSCCAG00000002868)	TRAPPC6A (ENSCCAG00000034136)	NKPD1 (ENSCCAG00000028944)	PPP1R37 (ENSCCAG00000037362)	ZNF296 (ENSCCAG00000007856)	CLASRP (ENSCCAG00000029385)	RELB (ENSCCAG00000026037)	CLPTM1 (ENSCCAG00000032526)	APOC2 (ENSCCAG00000024617)	APOC4 (ENSCCAG00000022993)	ENSCCAG00000037884	APOE (ENSCCAG00000017371)	TOMM40 (ENSCCAG00000034572)
Bolivian squirrel monkey	MODERN SPECIES	169	FBXO46 (ENSSBOG00000016576)	ENSSBOG00000035164	GIPR (ENSSBOG00000023899)	EML2 (ENSSBOG00000022777)	GPR4 (ENSSBOG00000019451)	OPA3 (ENSSBOG00000030278)	ENSSBOG00000025296	PPM1N (ENSSBOG00000035628)	RTN2 (ENSSBOG00000029177)	FOSB (ENSSBOG00000001761)	ERCC1 (ENSSBOG00000035042)	POLR1G (ENSSBOG00000032782)	ENSSBOG00000032923	ERCC2 (ENSSBOG00000030257)	KLC3 (ENSSBOG00000033253)	CKM (ENSSBOG00000030517) ##22	MARK4 (ENSSBOG00000020814)	ENSSBOG00000024944	ENSSBOG00000032180	TRAPPC6A (ENSSBOG00000029896)	NKPD1 (ENSSBOG00000001197)	PPP1R37 (ENSSBOG00000018944)	ZNF296 (ENSSBOG00000022159)	ENSSBOG00000029935	RELB (ENSSBOG00000032389)	CLPTM1 (ENSSBOG00000033277)	APOC2 (ENSSBOG00000034451)	APOC4 (ENSSBOG00000020365)	ENSSBOG00000035185	APOE (ENSSBOG00000033993)	ENSSBOG00000028680
Marmoset	MODERN SPECIES	14	QPCTL (ENSCJAG00000082509)	ENSCJAG00000019291	GIPR (ENSCJAG00000012422)	EML2 (ENSCJAG00000012469)	GPR4 (ENSCJAG00000047762)	OPA3 (ENSCJAG00000045305)	ENSCJAG00000012536	PPM1N (ENSCJAG00000012560)	RTN2 (ENSCJAG00000012569)	FOSB (ENSCJAG00000012636)	ERCC1 (ENSCJAG00000038856)	POLR1G (ENSCJAG00000012689)	PPP1R13L (ENSCJAG00000012693)	ERCC2 (ENSCJAG00000012716)	KLC3 (ENSCJAG00000012757)	CKM (ENSCJAG00000045755) ##22	MARK4 (ENSCJAG00000012801)	EXOC3L2 (ENSCJAG00000012854)	BLOC1S3 (ENSCJAG00000012780)	TRAPPC6A (ENSCJAG00000012869)	NKPD1 (ENSCJAG00000012882)	PPP1R37 (ENSCJAG00000012886)	ENSCJAG00000085678	ZNF296 (ENSCJAG00000012912)	CLASRP (ENSCJAG00000012926)	RELB (ENSCJAG00000012991)	CLPTM1 (ENSCJAG00000013016)	ENSCJAG00000070240	ENSCJAG00000078941	APOE (ENSCJAG00000084338)	TOMM40 (ENSCJAG00000013072)
Mas night monkey	MODERN SPECIES	1284	QPCTL (ENSANAG00000035587)	ENSANAG00000019777	GIPR (ENSANAG00000033440)	ENSANAG00000029331	GPR4 (ENSANAG00000019611)	OPA3 (ENSANAG00000023653)	ENSANAG00000034983	PPM1N (ENSANAG00000022999)	RTN2 (ENSANAG00000032309)	FOSB (ENSANAG00000035322)	ERCC1 (ENSANAG00000029523)	POLR1G (ENSANAG00000022477)	PPP1R13L (ENSANAG00000023805)	ERCC2 (ENSANAG00000022694)	ENSANAG00000020750	CKM (ENSANAG00000029385) ##22	MARK4 (ENSANAG00000038277)	EXOC3L2 (ENSANAG00000037617)	TRAPPC6A (ENSANAG00000032868)	NKPD1 (ENSANAG00000017851)	PPP1R37 (ENSANAG00000019671)	GEMIN7 (ENSANAG00000019968)	ZNF296 (ENSANAG00000038105)	CLASRP (ENSANAG00000023127)	RELB (ENSANAG00000023130)	CLPTM1 (ENSANAG00000027215)	APOC2 (ENSANAG00000027288)	APOC4 (ENSANAG00000027471)	APOE (ENSANAG00000028543)	TOMM40 (ENSANAG00000034303)	NECTIN2 (ENSANAG00000032757)
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Hominidae	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Pan	ANCESTRAL SPECIES	9	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Chimpanzee	MODERN SPECIES	10	QPCTL (ENSPTRG00000011163)	SNRPD2 (ENSPTRG00000011162)	GIPR (ENSPTRG00000050104)	ENSPTRG00000048889	GPR4 (ENSPTRG00000051128)	OPA3 (ENSPTRG00000045719)	VASP (ENSPTRG00000046601)	PPM1N (ENSPTRG00000047461)	RTN2 (ENSPTRG00000047264)	FOSB (ENSPTRG00000046160)	ERCC1 (ENSPTRG00000011152)	POLR1G (ENSPTRG00000011151)	PPP1R13L (ENSPTRG00000011150)	ERCC2 (ENSPTRG00000011149)	KLC3 (ENSPTRG00000011148)	CKM (ENSPTRG00000011147) ##22	MARK4 (ENSPTRG00000011145)	EXOC3L2 (ENSPTRG00000011144)	BLOC1S3 (ENSPTRG00000011143)	TRAPPC6A (ENSPTRG00000043883)	NKPD1 (ENSPTRG00000011141)	PPP1R37 (ENSPTRG00000011139)	GEMIN7 (ENSPTRG00000044428)	ZNF296 (ENSPTRG00000011136)	CLASRP (ENSPTRG00000022583)	RELB (ENSPTRG00000011133)	CLPTM1 (ENSPTRG00000011131)	APOC4 (ENSPTRG00000033962)	ENSPTRG00000038932	APOC1 (ENSPTRG00000011128)	APOE (ENSPTRG00000011127)
Bonobo	MODERN SPECIES	10	QPCTL (ENSPPAG00000028397)	SNRPD2 (ENSPPAG00000038031)	GIPR (ENSPPAG00000030152)	ENSPPAG00000013251	GPR4 (ENSPPAG00000008436)	ENSPPAG00000040725	VASP (ENSPPAG00000037088)	ENSPPAG00000030480	RTN2 (ENSPPAG00000038328)	FOSB (ENSPPAG00000035998)	ERCC1 (ENSPPAG00000043568)	POLR1G (ENSPPAG00000004958)	ENSPPAG00000036951	ERCC2 (ENSPPAG00000044005)	KLC3 (ENSPPAG00000043966)	CKM (ENSPPAG00000037821) ##22	MARK4 (ENSPPAG00000031718)	ENSPPAG00000039633	TRAPPC6A (ENSPPAG00000025811)	PPP1R37 (ENSPPAG00000031033)	GEMIN7 (ENSPPAG00000023831)	ZNF296 (ENSPPAG00000016242)	CLASRP (ENSPPAG00000040215)	RELB (ENSPPAG00000030963)	CLPTM1 (ENSPPAG00000038262)	ENSPPAG00000042437	ENSPPAG00000036696	APOE (ENSPPAG00000034562)	TOMM40 (ENSPPAG00000034103)	NECTIN2 (ENSPPAG00000041775)	BCAM (ENSPPAG00000034413)
Human	MODERN SPECIES	10	QPCTL (ENSG00000011478)	SNRPD2 (ENSG00000125743)	GIPR (ENSG00000010310)	EML2 (ENSG00000125746)	GPR4 (ENSG00000177464)	OPA3 (ENSG00000125741)	VASP (ENSG00000125753)	PPM1N (ENSG00000213889)	RTN2 (ENSG00000125744)	FOSB (ENSG00000125740)	ERCC1 (ENSG00000012061)	POLR1G (ENSG00000117877)	PPP1R13L (ENSG00000104881)	ERCC2 (ENSG00000104884)	KLC3 (ENSG00000104892)	CKM (ENSG00000104879) ##22	EXOC3L2 (ENSG00000283632)	BLOC1S3 (ENSG00000189114)	TRAPPC6A (ENSG00000007255)	NKPD1 (ENSG00000179846)	PPP1R37 (ENSG00000104866)	MARK4 (ENSG00000007047)	GEMIN7 (ENSG00000142252)	ZNF296 (ENSG00000170684)	CLASRP (ENSG00000104859)	RELB (ENSG00000104856)	CLPTM1 (ENSG00000104853)	APOC2 (ENSG00000234906)	APOC4-APOC2 (ENSG00000224916)	APOC4 (ENSG00000267467)	APOC1 (ENSG00000130208)
Gorilla	MODERN SPECIES	10	FBXO46 (ENSGGOG00000027287)	QPCTL (ENSGGOG00000002353)	SNRPD2 (ENSGGOG00000002350)	GIPR (ENSGGOG00000016144)	ENSGGOG00000015482	GPR4 (ENSGGOG00000043968)	ENSGGOG00000009890	VASP (ENSGGOG00000009879)	PPM1N (ENSGGOG00000000024)	RTN2 (ENSGGOG00000009863)	FOSB (ENSGGOG00000010952)	ERCC1 (ENSGGOG00000014332)	ENSGGOG00000015872	ERCC2 (ENSGGOG00000015842)	KLC3 (ENSGGOG00000015830)	CKM (ENSGGOG00000008806) ##22	MARK4 (ENSGGOG00000008801)	EXOC3L2 (ENSGGOG00000010717)	ENSGGOG00000028003	TRAPPC6A (ENSGGOG00000008686)	ENSGGOG00000008682	PPP1R37 (ENSGGOG00000008674)	GEMIN7 (ENSGGOG00000037037)	ZNF296 (ENSGGOG00000003398)	CLASRP (ENSGGOG00000003384)	RELB (ENSGGOG00000003380)	CLPTM1 (ENSGGOG00000008020)	ENSGGOG00000022601	APOC1A (ENSGGOG00000022078)	ENSGGOG00000037352	APOE (ENSGGOG00000006377)
Orangutan	MODERN SPECIES	10	QPCTL (ENSPPYG00000010130)	ENSPPYG00000010129	GIPR (ENSPPYG00000010128)	ENSPPYG00000010127	GPR4 (ENSPPYG00000010126)	ENSPPYG00000032022	VASP (ENSPPYG00000010124)	PPM1N (ENSPPYG00000030671)	RTN2 (ENSPPYG00000010122)	FOSB (ENSPPYG00000010121)	ERCC1 (ENSPPYG00000010120)	POLR1G (ENSPPYG00000010119)	PPP1R13L (ENSPPYG00000010118)	ERCC2 (ENSPPYG00000010117)	KLC3 (ENSPPYG00000010116)	CKM (ENSPPYG00000010114) ##22	MARK4 (ENSPPYG00000010113)	EXOC3L2 (ENSPPYG00000034441)	BLOC1S3 (ENSPPYG00000010110)	ENSPPYG00000010109	NKPD1 (ENSPPYG00000010108)	PPP1R37 (ENSPPYG00000010107)	GEMIN7 (ENSPPYG00000010106)	ZNF296 (ENSPPYG00000010105)	CLASRP (ENSPPYG00000010104)	RELB (ENSPPYG00000010103)	CLPTM1 (ENSPPYG00000010102)	APOC2 (ENSPPYG00000010101)	APOC4 (ENSPPYG00000040693)	ENSPPYG00000010100	APOE (ENSPPYG00000010099)
Gibbon	MODERN SPECIES	7	ENSNLEG00000002287	SNRPD2 (ENSNLEG00000002274)	ENSNLEG00000002246	GPR4 (ENSNLEG00000030194)	ENSNLEG00000002240	VASP (ENSNLEG00000002237)	PPM1N (ENSNLEG00000002225)	RTN2 (ENSNLEG00000002100)	FOSB (ENSNLEG00000002090)	ENSNLEG00000002069	POLR1G (ENSNLEG00000035363)	ENSNLEG00000002011	ENSNLEG00000001994	ENSNLEG00000001990	ENSNLEG00000035942	ENSNLEG00000001978 ##22	MARK4 (ENSNLEG00000001909)	ENSNLEG00000001907	BLOC1S3 (ENSNLEG00000018406)	TRAPPC6A (ENSNLEG00000033419)	ENSNLEG00000033759	PPP1R37 (ENSNLEG00000001875)	GEMIN7 (ENSNLEG00000001846)	ZNF296 (ENSNLEG00000001844)	CLASRP (ENSNLEG00000001811)	RELB (ENSNLEG00000001809)	CLPTM1 (ENSNLEG00000001779)	APOC4 (ENSNLEG00000001763)	APOE (ENSNLEG00000001740)	ENSNLEG00000001726	ENSNLEG00000026567
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765.p	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.a	ENSGT00950000182929.B.b
Golden snub-nosed monkey	MODERN SPECIES	2027	SNRPD2 (ENSRROG00000034764)	GIPR (ENSRROG00000031321)	EML2 (ENSRROG00000035796)	GPR4 (ENSRROG00000019999)	OPA3 (ENSRROG00000034269)	VASP (ENSRROG00000044619)	PPM1N (ENSRROG00000029244)	RTN2 (ENSRROG00000038364)	ENSRROG00000044485	FOSB (ENSRROG00000014678)	ERCC1 (ENSRROG00000043870)	POLR1G (ENSRROG00000043410)	ENSRROG00000041629	ERCC2 (ENSRROG00000040423)	KLC3 (ENSRROG00000006762)	CKM (ENSRROG00000043521) ##22	ENSRROG00000028468	MARK4 (ENSRROG00000042751)	EXOC3L2 (ENSRROG00000033651)	TRAPPC6A (ENSRROG00000031935)	PPP1R37 (ENSRROG00000043405)	GEMIN7 (ENSRROG00000044813)	ZNF296 (ENSRROG00000037896)	CLASRP (ENSRROG00000045419)	RELB (ENSRROG00000031217)	CLPTM1 (ENSRROG00000030689)	APOC2 (ENSRROG00000045650)	APOC4 (ENSRROG00000031862)	ENSRROG00000039964	APOE (ENSRROG00000029603)	TOMM40 (ENSRROG00000037978)
Black snub-nosed monkey	MODERN SPECIES	477	QPCTL (ENSRBIG00000037229)	ENSRBIG00000040969	GIPR (ENSRBIG00000044071)	EML2 (ENSRBIG00000027020)	GPR4 (ENSRBIG00000032340)	OPA3 (ENSRBIG00000038135)	ENSRBIG00000034996	PPM1N (ENSRBIG00000033587)	ENSRBIG00000034412	FOSB (ENSRBIG00000028796)	ERCC1 (ENSRBIG00000043956)	POLR1G (ENSRBIG00000040738)	ENSRBIG00000028434	ERCC2 (ENSRBIG00000031575)	KLC3 (ENSRBIG00000029912)	CKM (ENSRBIG00000040733) ##22	ENSRBIG00000003076	MARK4 (ENSRBIG00000042653)	EXOC3L2 (ENSRBIG00000029965)	BLOC1S3 (ENSRBIG00000010173)	TRAPPC6A (ENSRBIG00000028873)	PPP1R37 (ENSRBIG00000034685)	ZNF296 (ENSRBIG00000038795)	CLASRP (ENSRBIG00000042924)	RELB (ENSRBIG00000039429)	CLPTM1 (ENSRBIG00000022972)	APOC2 (ENSRBIG00000034907)	APOC4 (ENSRBIG00000039672)	ENSRBIG00000030257	APOE (ENSRBIG00000034780)	TOMM40 (ENSRBIG00000041415)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Vervet Monkey	MODERN SPECIES	25	QPCTL (ENSCSAG00000003156)	SNRPD2 (ENSCSAG00000003157)	GIPR (ENSCSAG00000003163)	GPR4 (ENSCSAG00000019626)	OPA3 (ENSCSAG00000003168)	VASP (ENSCSAG00000003169)	PPM1N (ENSCSAG00000003172)	RTN2 (ENSCSAG00000003175)	ENSCSAG00000003176	ERCC1 (ENSCSAG00000003179)	POLR1G (ENSCSAG00000003181)	PPP1R13L (ENSCSAG00000003183)	ENSCSAG00000003187	ERCC2 (ENSCSAG00000003189)	KLC3 (ENSCSAG00000003201)	CKM (ENSCSAG00000003204) ##22	MARK4 (ENSCSAG00000003211)	ENSCSAG00000019625	EXOC3L2 (ENSCSAG00000003214)	BLOC1S3 (ENSCSAG00000019624)	TRAPPC6A (ENSCSAG00000003218)	NKPD1 (ENSCSAG00000019623)	PPP1R37 (ENSCSAG00000003221)	GEMIN7 (ENSCSAG00000019622)	ZNF296 (ENSCSAG00000003225)	CLASRP (ENSCSAG00000003231)	RELB (ENSCSAG00000003233)	CLPTM1 (ENSCSAG00000003235)	APOC2 (ENSCSAG00000003240)	APOC4 (ENSCSAG00000003243)	APOC1 (ENSCSAG00000003245)
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Macaca	ANCESTRAL SPECIES	12	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.a	ENSGT00950000182929.B.b
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.a.a.b	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.a	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Rhesus	MODERN SPECIES	10	GIPR (ENSMMUG00000006936)	ENSMMUG00000019032	GPR4 (ENSMMUG00000019031)	ENSMMUG00000058115	OPA3 (ENSMMUG00000053242)	VASP (ENSMMUG00000022938)	PPM1N (ENSMMUG00000011715)	RTN2 (ENSMMUG00000011716)	FOSB (ENSMMUG00000014430)	ENSMMUG00000049515	ERCC1 (ENSMMUG00000000718)	POLR1G (ENSMMUG00000000717)	PPP1R13L (ENSMMUG00000000715)	ERCC2 (ENSMMUG00000014419)	KLC3 (ENSMMUG00000021891)	CKM (ENSMMUG00000013477) ##22	MARK4 (ENSMMUG00000018672)	ENSMMUG00000018879	BLOC1S3 (ENSMMUG00000022934)	NKPD1 (ENSMMUG00000022931)	PPP1R37 (ENSMMUG00000022930)	ENSMMUG00000060815	ZNF296 (ENSMMUG00000061579)	CLASRP (ENSMMUG00000014155)	RELB (ENSMMUG00000014153)	CLPTM1 (ENSMMUG00000002472)	APOC2 (ENSMMUG00000055305)	APOC4 (ENSMMUG00000002471)	APOC1 (ENSMMUG00000028749)	APOE (ENSMMUG00000014305)	TOMM40 (ENSMMUG00000014303)
Pig-tailed macaque	MODERN SPECIES	551	QPCTL (ENSMNEG00000035757)	ENSMNEG00000039787	GIPR (ENSMNEG00000035353)	ENSMNEG00000042527	GPR4 (ENSMNEG00000002892)	OPA3 (ENSMNEG00000040409)	VASP (ENSMNEG00000031417)	PPM1N (ENSMNEG00000033670)	RTN2 (ENSMNEG00000034805)	FOSB (ENSMNEG00000038931)	ERCC1 (ENSMNEG00000012554)	POLR1G (ENSMNEG00000028086)	PPP1R13L (ENSMNEG00000034033)	ERCC2 (ENSMNEG00000042641)	KLC3 (ENSMNEG00000040957)	CKM (ENSMNEG00000034259) ##22	MARK4 (ENSMNEG00000031127)	EXOC3L2 (ENSMNEG00000044544)	BLOC1S3 (ENSMNEG00000020790)	TRAPPC6A (ENSMNEG00000039973)	NKPD1 (ENSMNEG00000012192)	PPP1R37 (ENSMNEG00000033613)	GEMIN7 (ENSMNEG00000022258)	ZNF296 (ENSMNEG00000030927)	CLASRP (ENSMNEG00000000043)	RELB (ENSMNEG00000036702)	CLPTM1 (ENSMNEG00000032456)	APOC2 (ENSMNEG00000038542)	APOC4 (ENSMNEG00000035912)	ENSMNEG00000028685	APOE (ENSMNEG00000032951)
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Olive baboon	MODERN SPECIES	12	PPM1N (ENSPANG00000005403)	RTN2 (ENSPANG00000009463)	FOSB (ENSPANG00000002665)	ERCC1 (ENSPANG00000014628)	POLR1G (ENSPANG00000014599)	PPP1R13L (ENSPANG00000008539)	NTF4 (ENSPANG00000005193)	KCNA7 (ENSPANG00000010667)	SNRNP70 (ENSPANG00000004068)	LIN7B (ENSPANG00000002302)	PPFIA3 (ENSPANG00000025706)	HRC (ENSPANG00000031499)	ENSPANG00000030135	ERCC2 (ENSPANG00000032195)	KLC3 (ENSPANG00000024512)	CKM (ENSPANG00000012803) ##22	MARK4 (ENSPANG00000007316)	EXOC3L2 (ENSPANG00000008803)	BLOC1S3 (ENSPANG00000045388)	TRAPPC6A (ENSPANG00000008090)	NKPD1 (ENSPANG00000005270)	PPP1R37 (ENSPANG00000002967)	GEMIN7 (ENSPANG00000012354)	ZNF296 (ENSPANG00000011600)	CLASRP (ENSPANG00000012804)	RELB (ENSPANG00000007219)	CLPTM1 (ENSPANG00000024331)	APOC2 (ENSPANG00000024333)	APOC4 (ENSPANG00000024334)	ENSPANG00000024326	APOE (ENSPANG00000031383)
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Sooty mangabey	MODERN SPECIES	228	GIPR (ENSCATG00000039010)	EML2 (ENSCATG00000044498)	GPR4 (ENSCATG00000015059)	OPA3 (ENSCATG00000032509)	VASP (ENSCATG00000042996)	PPM1N (ENSCATG00000038667)	RTN2 (ENSCATG00000038527)	FOSB (ENSCATG00000042659)	ERCC1 (ENSCATG00000015252)	POLR1G (ENSCATG00000030677)	PPP1R13L (ENSCATG00000034656)	ENSCATG00000031579	ENSCATG00000044649	KLC3 (ENSCATG00000043270)	ENSCATG00000033695	CKM (ENSCATG00000014030) ##22	MARK4 (ENSCATG00000045079)	EXOC3L2 (ENSCATG00000038609)	BLOC1S3 (ENSCATG00000015025)	TRAPPC6A (ENSCATG00000042258)	NKPD1 (ENSCATG00000015132)	PPP1R37 (ENSCATG00000039813)	GEMIN7 (ENSCATG00000015354)	ZNF296 (ENSCATG00000015397)	CLASRP (ENSCATG00000040827)	RELB (ENSCATG00000018277)	CLPTM1 (ENSCATG00000041177)	APOC2 (ENSCATG00000033379)	APOC4 (ENSCATG00000028747)	ENSCATG00000030093	ENSCATG00000039865
Drill	MODERN SPECIES	494	GIPR (ENSMLEG00000043576)	ENSMLEG00000030229	GPR4 (ENSMLEG00000003807)	ENSMLEG00000031803	OPA3 (ENSMLEG00000040108)	VASP (ENSMLEG00000041511)	ENSMLEG00000013387	RTN2 (ENSMLEG00000031919)	FOSB (ENSMLEG00000033569)	ERCC1 (ENSMLEG00000029656)	POLR1G (ENSMLEG00000043530)	ENSMLEG00000031086	ERCC2 (ENSMLEG00000043492)	KLC3 (ENSMLEG00000040381)	ENSMLEG00000028116	CKM (ENSMLEG00000037963) ##22	MARK4 (ENSMLEG00000043604)	EXOC3L2 (ENSMLEG00000043963)	TRAPPC6A (ENSMLEG00000030819)	PPP1R37 (ENSMLEG00000044303)	GEMIN7 (ENSMLEG00000028032)	ZNF296 (ENSMLEG00000031124)	CLASRP (ENSMLEG00000034161)	RELB (ENSMLEG00000041838)	CLPTM1 (ENSMLEG00000030661)	APOC2 (ENSMLEG00000043412)	APOC4 (ENSMLEG00000027913)	APOC1 (ENSMLEG00000033709)	NECTIN2 (ENSMLEG00000043645)	BCAM (ENSMLEG00000028754)	BCL3 (ENSMLEG00000033523)
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Suina	ANCESTRAL SPECIES	2	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Pig	MODERN SPECIES	14	QPCTL (ENSSSCG00000032819)	SNRPD2 (ENSSSCG00000033500)	GIPR (ENSSSCG00000021053)	EML2 (ENSSSCG00000038229)	GPR4 (ENSSSCG00000037184)	OPA3 (ENSSSCG00000058475)	VASP (ENSSSCG00000036317)	PPM1N (ENSSSCG00000037001)	RTN2 (ENSSSCG00000036870)	FOSB (ENSSSCG00000031616)	ERCC1 (ENSSSCG00000055289)	POLR1G (ENSSSCG00000020754)	PPP1R13L (ENSSSCG00000036542)	ERCC2 (ENSSSCG00000039929)	KLC3 (ENSSSCG00000039864)	CKM (ENSSSCG00000036132) ##22	MARK4 (ENSSSCG00000022538)	EXOC3L2 (ENSSSCG00000040410)	ENSSSCG00000035706	TRAPPC6A (ENSSSCG00000035374)	NKPD1 (ENSSSCG00000035833)	PPP1R37 (ENSSSCG00000037056)	GEMIN7 (ENSSSCG00000033194)	ENSSSCG00000031166	CLASRP (ENSSSCG00000040264)	RELB (ENSSSCG00000038879)	CLPTM1 (ENSSSCG00000003085)	ENSSSCG00000003086	APOC4 (ENSSSCG00000058983)	APOE (ENSSSCG00000003088)	TOMM40 (ENSSSCG00000003089)
Chacoan peccary	MODERN SPECIES	799	QPCTL (ENSCWAG00000007680)	SNRPD2 (ENSCWAG00000007655)	GIPR (ENSCWAG00000007383)	EML2 (ENSCWAG00000006972)	GPR4 (ENSCWAG00000006910)	OPA3 (ENSCWAG00000006875)	VASP (ENSCWAG00000006847)	PPM1N (ENSCWAG00000006758)	RTN2 (ENSCWAG00000006684)	FOSB (ENSCWAG00000006321)	ERCC1 (ENSCWAG00000006073)	POLR1G (ENSCWAG00000006042)	PPP1R13L (ENSCWAG00000007629)	ERCC2 (ENSCWAG00000007442)	KLC3 (ENSCWAG00000007378)	CKM (ENSCWAG00000007339) ##22	MARK4 (ENSCWAG00000007300)	EXOC3L2 (ENSCWAG00000007215)	ENSCWAG00000007136	BLOC1S3 (ENSCWAG00000007112)	TRAPPC6A (ENSCWAG00000007010)	NKPD1 (ENSCWAG00000006981)	PPP1R37 (ENSCWAG00000006951)	GEMIN7 (ENSCWAG00000006937)	ZNF296 (ENSCWAG00000006900)	CLASRP (ENSCWAG00000006711)	RELB (ENSCWAG00000006535)	CLPTM1 (ENSCWAG00000006437)	APOC2 (ENSCWAG00000006393)	ENSCWAG00000006373	APOE (ENSCWAG00000006358)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Camelidae	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000012948.a	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a	ENSGT00940000161167
Alpaca	MODERN SPECIES	3363																ENSVPAG00000011152 ##22
Arabian camel	MODERN SPECIES	35	QPCTL (ENSCDRG00005009916)	SNRPD2 (ENSCDRG00005009839)	GIPR (ENSCDRG00005009575)	EML2 (ENSCDRG00005008817)	GPR4 (ENSCDRG00005008750)	OPA3 (ENSCDRG00005008699)	VASP (ENSCDRG00005008655)	ENSCDRG00005008614	RTN2 (ENSCDRG00005008404)	FOSB (ENSCDRG00005008193)	ERCC1 (ENSCDRG00005007850)	POLR1G (ENSCDRG00005007827)	PPP1R13L (ENSCDRG00005007577)	ERCC2 (ENSCDRG00005007441)	KLC3 (ENSCDRG00005007396)	CKM (ENSCDRG00005007135) ##22	MARK4 (ENSCDRG00005007201)	ENSCDRG00005007088	ENSCDRG00005007044	TRAPPC6A (ENSCDRG00005006907)	PPP1R37 (ENSCDRG00005006789)	GEMIN7 (ENSCDRG00005006771)	ZNF296 (ENSCDRG00005006724)	CLASRP (ENSCDRG00005006557)	RELB (ENSCDRG00005006405)	CLPTM1 (ENSCDRG00005006349)	APOC2 (ENSCDRG00005006292)	APOC4 (ENSCDRG00005006257)	ENSCDRG00005006242	APOE (ENSCDRG00005006223)	ENSCDRG00005006192
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Cetacea	ANCESTRAL SPECIES	6	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Narwhal	MODERN SPECIES	296	ENSMMNG00015007488	GIPR (ENSMMNG00015007342)	EML2 (ENSMMNG00015007133)	GPR4 (ENSMMNG00015007074)	OPA3 (ENSMMNG00015007066)	VASP (ENSMMNG00015007042)	PPM1N (ENSMMNG00015007023)	RTN2 (ENSMMNG00015006960)	FOSB (ENSMMNG00015006909)	ERCC1 (ENSMMNG00015006840)	POLR1G (ENSMMNG00015006785)	PPP1R13L (ENSMMNG00015006754)	ERCC2 (ENSMMNG00015006706)	KLC3 (ENSMMNG00015006659)	ENSMMNG00015006648	CKM (ENSMMNG00015006634) ##22	MARK4 (ENSMMNG00015006596)	EXOC3L2 (ENSMMNG00015006566)	BLOC1S3 (ENSMMNG00015006548)	TRAPPC6A (ENSMMNG00015006532)	NKPD1 (ENSMMNG00015006511)	PPP1R37 (ENSMMNG00015006472)	GEMIN7 (ENSMMNG00015006455)	ZNF296 (ENSMMNG00015006446)	CLASRP (ENSMMNG00015006402)	RELB (ENSMMNG00015006315)	CLPTM1 (ENSMMNG00015006240)	APOC2 (ENSMMNG00015006207)	ENSMMNG00015006191	APOE (ENSMMNG00015006181)	TOMM40 (ENSMMNG00015006165)
Beluga whale	MODERN SPECIES	14	QPCTL (ENSDLEG00000000148)	SNRPD2 (ENSDLEG00000000188)	GIPR (ENSDLEG00000000221)	EML2 (ENSDLEG00000000275)	OPA3 (ENSDLEG00000000472)	VASP (ENSDLEG00000000495)	ENSDLEG00000000541	RTN2 (ENSDLEG00000000550)	FOSB (ENSDLEG00000000573)	ERCC1 (ENSDLEG00000000601)	CD3EAP (ENSDLEG00000000625)	PPP1R13L (ENSDLEG00000000687)	ERCC2 (ENSDLEG00000000789)	KLC3 (ENSDLEG00000000859)	ENSDLEG00000000880	CKM (ENSDLEG00000000888) ##22	MARK4 (ENSDLEG00000000908)	EXOC3L2 (ENSDLEG00000000960)	BLOC1S3 (ENSDLEG00000000976)	TRAPPC6A (ENSDLEG00000000994)	NKPD1 (ENSDLEG00000001026)	PPP1R37 (ENSDLEG00000001075)	GEMIN7 (ENSDLEG00000001187)	ZNF296 (ENSDLEG00000001191)	CLASRP (ENSDLEG00000001206)	RELB (ENSDLEG00000001259)	CLPTM1 (ENSDLEG00000001367)	APOC2 (ENSDLEG00000001379)	ENSDLEG00000001388	APOE (ENSDLEG00000001401)	TOMM40 (ENSDLEG00000001411)
Vaquita	MODERN SPECIES	10	ENSPSNG00000007055	GIPR (ENSPSNG00000007181)	EML2 (ENSPSNG00000007601)	GPR4 (ENSPSNG00000007964)	OPA3 (ENSPSNG00000007984)	VASP (ENSPSNG00000008004)	PPM1N (ENSPSNG00000008040)	RTN2 (ENSPSNG00000008107)	FOSB (ENSPSNG00000008236)	ERCC1 (ENSPSNG00000008412)	POLR1G (ENSPSNG00000008629)	PPP1R13L (ENSPSNG00000008669)	ERCC2 (ENSPSNG00000008714)	KLC3 (ENSPSNG00000008893)	ENSPSNG00000009068	CKM (ENSPSNG00000009085) ##22	MARK4 (ENSPSNG00000009176)	EXOC3L2 (ENSPSNG00000009277)	ENSPSNG00000009335	TRAPPC6A (ENSPSNG00000009421)	NKPD1 (ENSPSNG00000009471)	PPP1R37 (ENSPSNG00000009509)	GEMIN7 (ENSPSNG00000009616)	ZNF296 (ENSPSNG00000009665)	CLASRP (ENSPSNG00000009802)	RELB (ENSPSNG00000009978)	CLPTM1 (ENSPSNG00000010345)	APOC2 (ENSPSNG00000010569)	ENSPSNG00000010685	APOE (ENSPSNG00000010763)	TOMM40 (ENSPSNG00000010804)
Dolphin	MODERN SPECIES	2445							VASP (ENSTTRG00000008328)	ENSTTRG00000008327	RTN2 (ENSTTRG00000008318)	FOSB (ENSTTRG00000008316)	ERCC1 (ENSTTRG00000008312)	POLR1G (ENSTTRG00000008311)	PPP1R13L (ENSTTRG00000008306)	ERCC2 (ENSTTRG00000008297)	KLC3 (ENSTTRG00000008289)	CKM (ENSTTRG00000008283) ##22	MARK4 (ENSTTRG00000008272)
Sperm whale	MODERN SPECIES	42						ENSPCTG00005017393	PPM1N (ENSPCTG00005017474)	RTN2 (ENSPCTG00005017793)	FOSB (ENSPCTG00005017925)	ERCC1 (ENSPCTG00005018106)	CD3EAP (ENSPCTG00005018334)	PPP1R13L (ENSPCTG00005018378)	ERCC2 (ENSPCTG00005018423)	KLC3 (ENSPCTG00005018519)	ENSPCTG00005018762	CK (ENSPCTG00005018779) ##22	MARK4 (ENSPCTG00005018813)
Blue whale	MODERN SPECIES	10	SNRPD2 (ENSBMSG00010014687)	GIPR (ENSBMSG00010014763)	EML2 (ENSBMSG00010015025)	GPR4 (ENSBMSG00010015297)	OPA3 (ENSBMSG00010015309)	VASP (ENSBMSG00010015338)	PPM1N (ENSBMSG00010015387)	RTN2 (ENSBMSG00010015497)	FOSB (ENSBMSG00010015683)	ERCC1 (ENSBMSG00010015851)	POLR1G (ENSBMSG00010015986)	PPP1R13L (ENSBMSG00010016007)	ERCC2 (ENSBMSG00010016132)	KLC3 (ENSBMSG00010016396)	ENSBMSG00010016434	CKM (ENSBMSG00010016453) ##22	MARK4 (ENSBMSG00010016517)	EXOC3L2 (ENSBMSG00010016591)	BLOC1S3 (ENSBMSG00010016676)	TRAPPC6A (ENSBMSG00010016722)	NKPD1 (ENSBMSG00010016786)	PPP1R37 (ENSBMSG00010016804)	GEMIN7 (ENSBMSG00010016828)	ZNF296 (ENSBMSG00010016843)	CLASRP (ENSBMSG00010016903)	RELB (ENSBMSG00010016973)	CLPTM1 (ENSBMSG00010017164)	APOC2 (ENSBMSG00010017237)	ENSBMSG00010017290	APOE (ENSBMSG00010017333)	TOMM40 (ENSBMSG00010017365)
Pecora	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Yarkand deer	MODERN SPECIES	27	SNRPD2 (ENSCHYG00000011477)	GIPR (ENSCHYG00000011385)	EML2 (ENSCHYG00000010342)	GPR4 (ENSCHYG00000010273)	ENSCHYG00000010242	OPA3 (ENSCHYG00000010190)	VASP (ENSCHYG00000009950)	PPM1N (ENSCHYG00000009858)	RTN2 (ENSCHYG00000009668)	FOSB (ENSCHYG00000009403)	ERCC1 (ENSCHYG00000008940)	POLR1G (ENSCHYG00000008868)	PPP1R13L (ENSCHYG00000003620)	ERCC2 (ENSCHYG00000003567)	KLC3 (ENSCHYG00000003518)	CKM (ENSCHYG00000003484) ##22	MARK4 (ENSCHYG00000003252)	ENSCHYG00000003176	ENSCHYG00000003168	ENSCHYG00000003146	BLOC1S3 (ENSCHYG00000003138)	TRAPPC6A (ENSCHYG00000003117)	NKPD1 (ENSCHYG00000003100)	PPP1R37 (ENSCHYG00000003054)	GEMIN7 (ENSCHYG00000003032)	ZNF296 (ENSCHYG00000003020)	CLASRP (ENSCHYG00000002995)	RELB (ENSCHYG00000002941)	ENSCHYG00000002909	ENSCHYG00000002894	APOE (ENSCHYG00000002871)
Percora_a	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Siberian musk deer	MODERN SPECIES	124	GIPR (ENSMMSG00000002994)	EML2 (ENSMMSG00000003108)	GPR4 (ENSMMSG00000003234)	OPA3 (ENSMMSG00000003240)	ENSMMSG00000003249	VASP (ENSMMSG00000003264)	ENSMMSG00000003279	ENSMMSG00000003289	RTN2 (ENSMMSG00000003303)	FOSB (ENSMMSG00000003347)	ERCC1 (ENSMMSG00000003423)	POLR1G (ENSMMSG00000003491)	PPP1R13L (ENSMMSG00000003509)	ERCC2 (ENSMMSG00000003542)	KLC3 (ENSMMSG00000003590)	CKM (ENSMMSG00000003622) ##22	MARK4 (ENSMMSG00000003654)	EXOC3L2 (ENSMMSG00000003701)	ENSMMSG00000003741	ENSMMSG00000003778	BLOC1S3 (ENSMMSG00000003789)	TRAPPC6A (ENSMMSG00000014337)	NKPD1 (ENSMMSG00000014391)	PPP1R37 (ENSMMSG00000014402)	GEMIN7 (ENSMMSG00000014420)	ZNF296 (ENSMMSG00000014434)	CLASRP (ENSMMSG00000014455)	RELB (ENSMMSG00000014533)	CLPTM1 (ENSMMSG00000014687)	APOC2 (ENSMMSG00000014744)	ENSMMSG00000014768
Bovidae	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Caprinae	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Rambouillet Sheep	MODERN SPECIES	5	SNRPD2 (ENSOARG00020011522)	GIPR (ENSOARG00020010483)	EML2 (ENSOARG00020009160)	GPR4 (ENSOARG00020009088)	OPA3 (ENSOARG00020009064)	VASP (ENSOARG00020009004)	PPM1N (ENSOARG00020008873)	RTN2 (ENSOARG00020008656)	FOSB (ENSOARG00020008243)	ERCC1 (ENSOARG00020007969)	POLR1G (ENSOARG00020007892)	PPP1R13L (ENSOARG00020007840)	ENSOARG00020007820	ERCC2 (ENSOARG00020007166)	KLC3 (ENSOARG00020006917)	CKM (ENSOARG00020006864) ##22	MARK4 (ENSOARG00020006366)	EXOC3L2 (ENSOARG00020006236)	ENSOARG00020006214	ENSOARG00020006186	ENSOARG00020006173	BLOC1S3 (ENSOARG00020006168)	TRAPPC6A (ENSOARG00020006142)	NKPD1 (ENSOARG00020006130)	PPP1R37 (ENSOARG00020006113)	GEMIN7 (ENSOARG00020006101)	ZNF296 (ENSOARG00020006063)	CLASRP (ENSOARG00020005970)	RELB (ENSOARG00020005934)	CLPTM1 (ENSOARG00020005849)	APOC2 (ENSOARG00020005819)
Goat	MODERN SPECIES	9	ENSCHIG00000015755	GIPR (ENSCHIG00000020718)	EML2 (ENSCHIG00000013582)	GPR4 (ENSCHIG00000005655)	ENSCHIG00000010098	OPA3 (ENSCHIG00000017112)	VASP (ENSCHIG00000012132)	PPM1N (ENSCHIG00000021371)	RTN2 (ENSCHIG00000014657)	FOSB (ENSCHIG00000003296)	POLR1G (ENSCHIG00000022038)	ERCC1 (ENSCHIG00000025635)	PPP1R13L (ENSCHIG00000025842)	ERCC2 (ENSCHIG00000022980)	KLC3 (ENSCHIG00000026294)	CKM (ENSCHIG00000024701) ##22	MARK4 (ENSCHIG00000020349)	EXOC3L2 (ENSCHIG00000009277)	ENSCHIG00000023872	BLOC1S3 (ENSCHIG00000012308)	TRAPPC6A (ENSCHIG00000001236)	NKPD1 (ENSCHIG00000024854)	PPP1R37 (ENSCHIG00000026154)	GEMIN7 (ENSCHIG00000010022)	ZNF296 (ENSCHIG00000002342)	CLASRP (ENSCHIG00000024252)	RELB (ENSCHIG00000012617)	CLPTM1 (ENSCHIG00000005999)	APOC2 (ENSCHIG00000016235)	ENSCHIG00000023824	ENSCHIG00000009240
Bovinae	ANCESTRAL SPECIES	3	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00960000187132	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913
American bison	MODERN SPECIES	3227	QPCTL (ENSBBBG00000000961)	SNRPD2 (ENSBBBG00000000935)	GIPR (ENSBBBG00000000834)	EML2 (ENSBBBG00000014978)	GPR4 (ENSBBBG00000003575)	OPA3 (ENSBBBG00000003720)	VASP (ENSBBBG00000015011)	PPM1N (ENSBBBG00000015044)	RTN2 (ENSBBBG00000003740)	FOSB (ENSBBBG00000003755)	ERCC1 (ENSBBBG00000015250)	POLR1G (ENSBBBG00000015276)	PPP1R13L (ENSBBBG00000015318)	ERCC2 (ENSBBBG00000001271)	KLC3 (ENSBBBG00000003490)	CKM (ENSBBBG00000003808) ##22	MARK4 (ENSBBBG00000015357)	EXOC3L2 (ENSBBBG00000001245)	ENSBBBG00000015410	ENSBBBG00000015413	BLOC1S3 (ENSBBBG00000015420)	TRAPPC6A (ENSBBBG00000015438)	NKPD1 (ENSBBBG00000015453)	PPP1R37 (ENSBBBG00000003853)	GEMIN7 (ENSBBBG00000015475)	ZNF296 (ENSBBBG00000015485)	CLASRP (ENSBBBG00000015593)	RELB (ENSBBBG00000003442)	CLPTM1 (ENSBBBG00000015636)	APOC2 (ENSBBBG00000015655)	ENSBBBG00000007562
Bos	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00960000187132	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913
Bos_a	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00960000187132.a	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913
Domestic yak	MODERN SPECIES	12	FBXO46 (ENSBGRG00000020994)	QPCTL (ENSBGRG00000021008)	SNRPD2 (ENSBGRG00000021083)	GIPR (ENSBGRG00000021139)	EML2 (ENSBGRG00000021380)	GPR4 (ENSBGRG00000021757)	OPA3 (ENSBGRG00000021767)	VASP (ENSBGRG00000021830)	PPM1N (ENSBGRG00000021919)	RTN2 (ENSBGRG00000022025)	FOSB (ENSBGRG00000022164)	ERCC1 (ENSBGRG00000022455)	POLR1G (ENSBGRG00000022695)	ERCC2 (ENSBGRG00000022782)	KLC3 (ENSBGRG00000023303)	CKM (ENSBGRG00000023521) ##22	MARK4 (ENSBGRG00000023592)	ENSBGRG00000023668	ENSBGRG00000023691	ENSBGRG00000023718	ENSBGRG00000023907	ENSBGRG00000023919	ENSBGRG00000023928	BLOC1S3 (ENSBGRG00000023950)	TRAPPC6A (ENSBGRG00000023978)	NKPD1 (ENSBGRG00000024051)	PPP1R37 (ENSBGRG00000024063)	ENSBGRG00000024101	ZNF296 (ENSBGRG00000024122)	CLASRP (ENSBGRG00000024145)	RELB (ENSBGRG00000024301)
Wild yak	MODERN SPECIES	1165	SNRPD2 (ENSBMUG00000020701)	GIPR (ENSBMUG00000020673)	EML2 (ENSBMUG00000020571)	GPR4 (ENSBMUG00000020549)	OPA3 (ENSBMUG00000020538)	VASP (ENSBMUG00000020524)	PPM1N (ENSBMUG00000020510)	RTN2 (ENSBMUG00000020491)	FOSB (ENSBMUG00000020469)	ERCC1 (ENSBMUG00000020439)	POLR1G (ENSBMUG00000020360)	PPP1R13L (ENSBMUG00000020329)	ENSBMUG00000020297	ENSBMUG00000020276	KLC3 (ENSBMUG00000020258)	CKM (ENSBMUG00000020235) ##22	MARK4 (ENSBMUG00000020222)	EXOC3L2 (ENSBMUG00000020174)	ENSBMUG00000020157	ENSBMUG00000020148	TRAPPC6A (ENSBMUG00000020134)	NKPD1 (ENSBMUG00000020111)	PPP1R37 (ENSBMUG00000020094)	ENSBMUG00000020021	ZNF296 (ENSBMUG00000020016)	CLASRP (ENSBMUG00000020005)	RELB (ENSBMUG00000019964)	ENSBMUG00000019950	CLPTM1 (ENSBMUG00000019939)	ENSBMUG00000019921	ENSBMUG00000019911
Bos_b	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00960000187132	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Hybrid Bos Indicus	MODERN SPECIES	9	FBXO46 (ENSBIXG00005003957)	QPCTL (ENSBIXG00005003947)	SNRPD2 (ENSBIXG00005006167)	GIPR (ENSBIXG00005023073)	EML2 (ENSBIXG00005022960)	ENSBIXG00005022571	VASP (ENSBIXG00005022552)	PPM1N (ENSBIXG00005022517)	RTN2 (ENSBIXG00005022451)	FOSB (ENSBIXG00005022400)	ERCC1 (ENSBIXG00005022223)	POLR1G (ENSBIXG00005007166)	PPP1R13L (ENSBIXG00005022122)	ERCC2 (ENSBIXG00005022070)	KLC3 (ENSBIXG00005022032)	CKM (ENSBIXG00005022002) ##22	MARK4 (ENSBIXG00005021933)	EXOC3L2 (ENSBIXG00005021785)	ENSBIXG00005003661	ENSBIXG00005005749	ENSBIXG00005021698	NKPD1 (ENSBIXG00005021646)	PPP1R37 (ENSBIXG00005021626)	GEMIN7 (ENSBIXG00005021602)	ZNF296 (ENSBIXG00005003640)	CLASRP (ENSBIXG00005000003)	RELB (ENSBIXG00005021511)	CLPTM1 (ENSBIXG00005021324)	ENSBIXG00005007369	ENSBIXG00005021223	APOE (ENSBIXG00005021185)
Cow	MODERN SPECIES	9	SNRPD2 (ENSBTAG00000012177)	GIPR (ENSBTAG00000005527)	EML2 (ENSBTAG00000015764)	GPR4 (ENSBTAG00000018398)	OPA3 (ENSBTAG00000019605)	ENSBTAG00000049026	VASP (ENSBTAG00000019604)	PPM1N (ENSBTAG00000014187)	RTN2 (ENSBTAG00000008185)	FOSB (ENSBTAG00000008182)	ERCC1 (ENSBTAG00000017355)	POLR1G (ENSBTAG00000023601)	PPP1R13L (ENSBTAG00000020689)	ERCC2 (ENSBTAG00000002072)	KLC3 (ENSBTAG00000002070)	CKM (ENSBTAG00000013921) ##22	MARK4 (ENSBTAG00000002682)	ENSBTAG00000030882	EXOC3L2 (ENSBTAG00000015836)	ENSBTAG00000052172	BLOC1S3 (ENSBTAG00000007070)	TRAPPC6A (ENSBTAG00000007065)	NKPD1 (ENSBTAG00000020074)	PPP1R37 (ENSBTAG00000018834)	GEMIN7 (ENSBTAG00000010668)	ZNF296 (ENSBTAG00000013702)	CLASRP (ENSBTAG00000013697)	RELB (ENSBTAG00000038428)	CLPTM1 (ENSBTAG00000020560)	APOC2 (ENSBTAG00000020558)	APOC4 (ENSBTAG00000020556)
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Microbat	MODERN SPECIES	2310																CKM (ENSMLUG00000012265) ##22	MARK4 (ENSMLUG00000012252)
Greater horseshoe bat	MODERN SPECIES	6	QPCTL (ENSRFEG00010008930)	ENSRFEG00010008870	GIPR (ENSRFEG00010008371)	EML2 (ENSRFEG00010007875)	GPR4 (ENSRFEG00010007847)	OPA3 (ENSRFEG00010007786)	VASP (ENSRFEG00010007608)	RTN2 (ENSRFEG00010007128)	FOSB (ENSRFEG00010006945)	ERCC1 (ENSRFEG00010006811)	POLR1G (ENSRFEG00010006762)	PPP1R13L (ENSRFEG00010006729)	ERCC2 (ENSRFEG00010006620)	KLC3 (ENSRFEG00010006568)	ENSRFEG00010006537	CKM (ENSRFEG00010006512) ##22	MARK4 (ENSRFEG00010006484)	EXOC3L2 (ENSRFEG00010006452)	ENSRFEG00010006416	ENSRFEG00010006401	BLOC1S3 (ENSRFEG00010006387)	TRAPPC6A (ENSRFEG00010006338)	NKPD1 (ENSRFEG00010006308)	PPP1R37 (ENSRFEG00010006262)	GEMIN7 (ENSRFEG00010006242)	ZNF296 (ENSRFEG00010006216)	CLASRP (ENSRFEG00010006108)	RELB (ENSRFEG00010006009)	CLPTM1 (ENSRFEG00010005927)	ENSRFEG00010005861	ENSRFEG00010005837
Megabat	MODERN SPECIES	470	SNRPD2 (ENSPVAG00000001345)	GIPR (ENSPVAG00000001343)	EML2 (ENSPVAG00000001340)	GPR4 (ENSPVAG00000001339)	OPA3 (ENSPVAG00000001338)	VASP (ENSPVAG00000001336)	ENSPVAG00000001335	PPM1N (ENSPVAG00000001334)	RTN2 (ENSPVAG00000001333)	FOSB (ENSPVAG00000001332)	ERCC1 (ENSPVAG00000001331)	POLR1G (ENSPVAG00000001330)	PPP1R13L (ENSPVAG00000001329)	ERCC2 (ENSPVAG00000001328)	KLC3 (ENSPVAG00000001327)	CKM (ENSPVAG00000001326) ##22	MARK4 (ENSPVAG00000001325)	ENSPVAG00000001324
Equus	ANCESTRAL SPECIES	1	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Donkey	MODERN SPECIES	18	QPCTL (ENSEASG00005014212)	ENSEASG00005014210	GIPR (ENSEASG00005014208)	EML2 (ENSEASG00005014204)	GPR4 (ENSEASG00005028869)	ENSEASG00005028592	VASP (ENSEASG00005014200)	ENSEASG00005037630	RTN2 (ENSEASG00005014192)	FOSB (ENSEASG00005025490)	ERCC1 (ENSEASG00005014190)	POLR1G (ENSEASG00005014188)	PPP1R13L (ENSEASG00005014187)	ERCC2 (ENSEASG00005013856)	KLC3 (ENSEASG00005013822)	CKM (ENSEASG00005004121) ##22	ENSEASG00005013818	EXOC3L2 (ENSEASG00005013809)	ENSEASG00005013803	ENSEASG00005013800	BLOC1S3 (ENSEASG00005025055)	ENSEASG00005038539	NKPD1 (ENSEASG00005013789)	PPP1R37 (ENSEASG00005013782)	GEMIN7 (ENSEASG00005033816)	ZNF296 (ENSEASG00005024434)	CLASRP (ENSEASG00005013755)	RELB (ENSEASG00005013746)	CLPTM1 (ENSEASG00005013737)	APOC2 (ENSEASG00005033261)	APOC4 (ENSEASG00005013735)
Horse	MODERN SPECIES	1	QPCTL (ENSECAG00000009265)	SNRPD2 (ENSECAG00000007824)	GIPR (ENSECAG00000015923)	EML2 (ENSECAG00000018032)	GPR4 (ENSECAG00000045714)	OPA3 (ENSECAG00000014284)	VASP (ENSECAG00000007818)	PPM1N (ENSECAG00000005419)	RTN2 (ENSECAG00000022897)	FOSB (ENSECAG00000018002)	ERCC1 (ENSECAG00000011385)	POLR1G (ENSECAG00000032490)	PPP1R13L (ENSECAG00000024828)	ERCC2 (ENSECAG00000036849)	KLC3 (ENSECAG00000022555)	CKM (ENSECAG00000022433) ##22	MARK4 (ENSECAG00000000359)	EXOC3L2 (ENSECAG00000023895)	ENSECAG00000023091	BLOC1S3 (ENSECAG00000048765)	TRAPPC6A (ENSECAG00000018946)	NKPD1 (ENSECAG00000033188)	PPP1R37 (ENSECAG00000012840)	GEMIN7 (ENSECAG00000005915)	ZNF296 (ENSECAG00000011640)	CLASRP (ENSECAG00000009232)	RELB (ENSECAG00000020898)	CLPTM1 (ENSECAG00000017326)	APOC2 (ENSECAG00000014224)	ENSECAG00000046002	APOE (ENSECAG00000008236)
Carnivora	ANCESTRAL SPECIES	2	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Felidae	ANCESTRAL SPECIES	7	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Panthera	ANCESTRAL SPECIES	20	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Tiger	MODERN SPECIES	535	BFSP1 (ENSPTIG00000019816)	PCSK2 (ENSPTIG00000018656)	OTOR (ENSPTIG00000018477)	OPA3 (ENSPTIG00000018436)	VASP (ENSPTIG00000017955)	PPM1N (ENSPTIG00000016985)	RTN2 (ENSPTIG00000016394)	FOSB (ENSPTIG00000015177)	ERCC1 (ENSPTIG00000014519)	POLR1G (ENSPTIG00000014078)	PPP1R13L (ENSPTIG00000012853)	ENSPTIG00000012675	ENSPTIG00000011864	KLC3 (ENSPTIG00000011057)	ENSPTIG00000000507	CKM (ENSPTIG00000010161) ##22	ENSPTIG00000009796	ENSPTIG00000009092	ENSPTIG00000008710	TRAPPC6A (ENSPTIG00000007805)	GEMIN7 (ENSPTIG00000000303)	ENSPTIG00000006698	RELB (ENSPTIG00000004316)	CLPTM1 (ENSPTIG00000000945)	APOC2 (ENSPTIG00000020728)	ENSPTIG00000020606	ENSPTIG00000020485	TOMM40 (ENSPTIG00000019953)
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
leopard	MODERN SPECIES	103	QPCTL (ENSPPRG00000011974)	GIPR (ENSPPRG00000011461)	EML2 (ENSPPRG00000010239)	GPR4 (ENSPPRG00000015030)	OPA3 (ENSPPRG00000009051)	ENSPPRG00000008284	VASP (ENSPPRG00000008102)	PPM1N (ENSPPRG00000005053)	RTN2 (ENSPPRG00000004264)	FOSB (ENSPPRG00000004058)	ERCC1 (ENSPPRG00000003321)	POLR1G (ENSPPRG00000001954)	PPP1R13L (ENSPPRG00000001485)	ERCC2 (ENSPPRG00000000507)	KLC3 (ENSPPRG00000022836)	CKM (ENSPPRG00000023495) ##22	ENSPPRG00000023648	MARK4 (ENSPPRG00000023795)	EXOC3L2 (ENSPPRG00000024467)	BLOC1S3 (ENSPPRG00000014754)	TRAPPC6A (ENSPPRG00000024693)	PPP1R37 (ENSPPRG00000018798)	GEMIN7 (ENSPPRG00000014746)	ZNF296 (ENSPPRG00000018193)	CLASRP (ENSPPRG00000017479)	RELB (ENSPPRG00000013193)	CLPTM1 (ENSPPRG00000012168)	APOC2 (ENSPPRG00000010972)	ENSPPRG00000010783	ENSPPRG00000010651	APOE (ENSPPRG00000010588)
lion	MODERN SPECIES	15	AP2A1 (ENSPLOG00000007711)	TSKS (ENSPLOG00000007572)	CPT1C (ENSPLOG00000007450)	ENSPLOG00000007411	PRMT1 (ENSPLOG00000007276)	BCL2L12 (ENSPLOG00000007139)	IRF3 (ENSPLOG00000007056)	SCAF1 (ENSPLOG00000007025)	RRAS (ENSPLOG00000006992)	PRR12 (ENSPLOG00000006927)	PRRG2 (ENSPLOG00000006869)	NOSIP (ENSPLOG00000006833)	PPP1R13L (ENSPLOG00000006777)	ERCC2 (ENSPLOG00000006584)	KLC3 (ENSPLOG00000006444)	CKM (ENSPLOG00000006406) ##22	MARK4 (ENSPLOG00000006356)	EXOC3L2 (ENSPLOG00000006300)	TRAPPC6A (ENSPLOG00000006245)	NKPD1 (ENSPLOG00000006206)	PPP1R37 (ENSPLOG00000006078)	ZNF296 (ENSPLOG00000006046)	CLASRP (ENSPLOG00000005979)	RELB (ENSPLOG00000005791)	CLPTM1 (ENSPLOG00000005697)	APOC2 (ENSPLOG00000005670)	ENSPLOG00000005642	APOE (ENSPLOG00000005599)	TOMM40 (ENSPLOG00000005561)	NECTIN2 (ENSPLOG00000005523)	BCAM (ENSPLOG00000005452)
Cat	MODERN SPECIES	246	QPCTL (ENSFCAG00000012476)	SNRPD2 (ENSFCAG00000022530)	GIPR (ENSFCAG00000007332)	EML2 (ENSFCAG00000007330)	GPR4 (ENSFCAG00000031197)	OPA3 (ENSFCAG00000030677)	VASP (ENSFCAG00000007424)	PPM1N (ENSFCAG00000007428)	RTN2 (ENSFCAG00000007430)	FOSB (ENSFCAG00000030571)	ERCC1 (ENSFCAG00000007439)	POLR1G (ENSFCAG00000043166)	PPP1R13L (ENSFCAG00000033518)	ERCC2 (ENSFCAG00000002679)	KLC3 (ENSFCAG00000002676)	CKM (ENSFCAG00000002672) ##22	MARK4 (ENSFCAG00000002671)	EXOC3L2 (ENSFCAG00000004804)	BLOC1S3 (ENSFCAG00000036089)	TRAPPC6A (ENSFCAG00000027259)	NKPD1 (ENSFCAG00000042894)	PPP1R37 (ENSFCAG00000001768)	GEMIN7 (ENSFCAG00000043198)	ZNF296 (ENSFCAG00000040249)	CLASRP (ENSFCAG00000033941)	RELB (ENSFCAG00000025715)	CLPTM1 (ENSFCAG00000004797)	ENSFCAG00000018891	APOC4 (ENSFCAG00000004795)	ENSFCAG00000033939	TOMM40 (ENSFCAG00000004793)
Caniformia	ANCESTRAL SPECIES	1	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Canidae	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275.d	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Canis_lupus	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275.d	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Dingo	MODERN SPECIES	125	QPCTL (ENSCAFG00020003527)	ENSCAFG00020003532	GIPR (ENSCAFG00020003543)	EML2 (ENSCAFG00020003779)	GPR4 (ENSCAFG00020011193)	OPA3 (ENSCAFG00020011195)	ENSCAFG00020011202	PPM1N (ENSCAFG00020011228)	RTN2 (ENSCAFG00020011246)	FOSB (ENSCAFG00020011287)	ERCC1 (ENSCAFG00020011298)	POLR1G (ENSCAFG00020011342)	PPP1R13L (ENSCAFG00020011344)	ERCC2 (ENSCAFG00020011390)	KLC3 (ENSCAFG00020012214)	CKM (ENSCAFG00020012218) ##22	MARK4 (ENSCAFG00020012237)	EXOC3L2 (ENSCAFG00020012244)	BLOC1S3 (ENSCAFG00020012264)	TRAPPC6A (ENSCAFG00020012265)	NKPD1 (ENSCAFG00020012275)	PPP1R37 (ENSCAFG00020012294)	GEMIN7 (ENSCAFG00020012296)	ZNF296 (ENSCAFG00020012298)	ENSCAFG00020012303	RELB (ENSCAFG00020012320)	CLPTM1 (ENSCAFG00020012406)	APOC2 (ENSCAFG00020012410)	ENSCAFG00020012416	APOC1 (ENSCAFG00020012420)	APOE (ENSCAFG00020012422)
Dog	MODERN SPECIES		QPCTL (ENSCAFG00845004866)	GIPR (ENSCAFG00845004894)	EML2 (ENSCAFG00845004953)	GPR4 (ENSCAFG00845005035)	OPA3 (ENSCAFG00845005041)	VASP (ENSCAFG00845005094)	PPM1N (ENSCAFG00845005133)	RTN2 (ENSCAFG00845005157)	FOSB (ENSCAFG00845005191)	ERCC1 (ENSCAFG00845005241)	POLR1G (ENSCAFG00845005277)	PPP1R13L (ENSCAFG00845005302)	ENSCAFG00845005341	ERCC2 (ENSCAFG00845005380)	KLC3 (ENSCAFG00845005524)	CKM (ENSCAFG00845005622) ##22	MARK4 (ENSCAFG00845005692)	EXOC3L2 (ENSCAFG00845005764)	BLOC1S3 (ENSCAFG00845005799)	TRAPPC6A (ENSCAFG00845005834)	NKPD1 (ENSCAFG00845005872)	PPP1R37 (ENSCAFG00845005905)	GEMIN7 (ENSCAFG00845005934)	ZNF296 (ENSCAFG00845005956)	CLASRP (ENSCAFG00845006006)	RELB (ENSCAFG00845006117)	CLPTM1 (ENSCAFG00845006342)	APOC2 (ENSCAFG00845006579)	ENSCAFG00845006618	APOC1 (ENSCAFG00845006666)	APOE (ENSCAFG00845006705)
Red fox	MODERN SPECIES	101	EML2 (ENSVVUG00000003317)	GPR4 (ENSVVUG00000004011)	OPA3 (ENSVVUG00000004015)	ENSVVUG00000004018	VASP (ENSVVUG00000004020)	PPM1N (ENSVVUG00000004040)	RTN2 (ENSVVUG00000004056)	FOSB (ENSVVUG00000004082)	ERCC1 (ENSVVUG00000004091)	CD3EAP (ENSVVUG00000004115)	ENSVVUG00000004117	ENSVVUG00000004122	ENSVVUG00000004131	ERCC2 (ENSVVUG00000004141)	KLC3 (ENSVVUG00000004168)	CKM (ENSVVUG00000004188) ##22	ENSVVUG00000004198	MARK4 (ENSVVUG00000004378)	ENSVVUG00000008107	BLOC1S3 (ENSVVUG00000008112)	TRAPPC6A (ENSVVUG00000008116)	ENSVVUG00000008141	PPP1R37 (ENSVVUG00000008143)	GEMIN7 (ENSVVUG00000008153)	ZNF296 (ENSVVUG00000008157)	CLASRP (ENSVVUG00000008161)	RELB (ENSVVUG00000008209)	CLPTM1 (ENSVVUG00000008275)	APOC2 (ENSVVUG00000008286)	APOC4 (ENSVVUG00000008290)	APOC1 (ENSVVUG00000008301)
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667.k	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667.k	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
American mink	MODERN SPECIES	135	SNRPD2 (ENSNVIG00000009077)	GIPR (ENSNVIG00000009001)	EML2 (ENSNVIG00000008942)	GPR4 (ENSNVIG00000008931)	OPA3 (ENSNVIG00000008924)	VASP (ENSNVIG00000008886)	PPM1N (ENSNVIG00000008818)	RTN2 (ENSNVIG00000008748)	FOSB (ENSNVIG00000008682)	ERCC1 (ENSNVIG00000008650)	POLR1G (ENSNVIG00000008637)	PPP1R13L (ENSNVIG00000008571)	ERCC2 (ENSNVIG00000008419)	KLC3 (ENSNVIG00000008354)	ENSNVIG00000008342	CKM (ENSNVIG00000008333) ##22	MARK4 (ENSNVIG00000008204)	EXOC3L2 (ENSNVIG00000008145)	BLOC1S3 (ENSNVIG00000008133)	TPC6A (ENSNVIG00000008111)	NKPD1 (ENSNVIG00000008090)	PPP1R37 (ENSNVIG00000008044)	GEMI7 (ENSNVIG00000008011)	ZNF296 (ENSNVIG00000008007)	CLASRP (ENSNVIG00000007850)	RELB (ENSNVIG00000007731)	CLPTM1 (ENSNVIG00000007696)	APOC2 (ENSNVIG00000007673)	ENSNVIG00000007657	ENSNVIG00000007641	APOE (ENSNVIG00000007616)
Ferret	MODERN SPECIES	291	FBXO46 (ENSMPUG00000019374)	QPCTL (ENSMPUG00000005727)	SNRPD2 (ENSMPUG00000005733)	GIPR (ENSMPUG00000005756)	EML2 (ENSMPUG00000005855)	OPA3 (ENSMPUG00000005872)	VASP (ENSMPUG00000005880)	PPM1N (ENSMPUG00000005895)	RTN2 (ENSMPUG00000005903)	FOSB (ENSMPUG00000005914)	ERCC1 (ENSMPUG00000005947)	POLR1G (ENSMPUG00000005965)	PPP1R13L (ENSMPUG00000005975)	ERCC2 (ENSMPUG00000005989)	KLC3 (ENSMPUG00000006006)	CKM (ENSMPUG00000006049) ##22	MARK4 (ENSMPUG00000006053)	BLOC1S3 (ENSMPUG00000019376)	TRAPPC6A (ENSMPUG00000006065)	NKPD1 (ENSMPUG00000006117)	PPP1R37 (ENSMPUG00000006125)	GEMIN7 (ENSMPUG00000019379)	ENSMPUG00000006134	ENSMPUG00000006143	CLPTM1 (ENSMPUG00000006148)	APOC2 (ENSMPUG00000006161)	ENSMPUG00000006178	APOC1 (ENSMPUG00000006201)	APOE (ENSMPUG00000006228)	TOMM40 (ENSMPUG00000006267)	ENSMPUG00000006278
Ursidae	ANCESTRAL SPECIES	30	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000186179	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667.k	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Giant Panda	MODERN SPECIES	1958																ENSAMEG00000028139 ##22
Ursus	ANCESTRAL SPECIES	13	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000186179	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.a	ENSGT00950000182929.B.b	ENSGT00390000003308.a	ENSGT00940000161167	ENSGT00940000161038	ENSGT00940000162336
Polar bear	MODERN SPECIES	115	GIPR (ENSUMAG00000023684)	EML2 (ENSUMAG00000023616)	GPR4 (ENSUMAG00000023598)	OPA3 (ENSUMAG00000023597)	ENSUMAG00000023595	VASP (ENSUMAG00000023593)	ENSUMAG00000023592	RTN2 (ENSUMAG00000023591)	FOSB (ENSUMAG00000023589)	ERCC1 (ENSUMAG00000023588)	POLR1G (ENSUMAG00000023587)	ENSUMAG00000023583	ERCC2 (ENSUMAG00000023492)	ENSUMAG00000023480	ENSUMAG00000023478	CKM (ENSUMAG00000023476) ##22	MARK4 (ENSUMAG00000023463)	ENSUMAG00000023455	TRAPPC6A (ENSUMAG00000023452)	GEMIN7 (ENSUMAG00000023443)	CLASRP (ENSUMAG00000023392)	RELB (ENSUMAG00000023342)	CLPTM1 (ENSUMAG00000023328)	ENSUMAG00000023321	APOC1 (ENSUMAG00000023318)	NECTIN2 (ENSUMAG00000023265)	BCAM (ENSUMAG00000023202)	CBLC (ENSUMAG00000023192)	BCL3 (ENSUMAG00000023187)	CEACAM16 (ENSUMAG00000023183)	CEACAM19 (ENSUMAG00000023173)
American black bear	MODERN SPECIES	353				OPA3 (ENSUAMG00000020211)	VASP (ENSUAMG00000020210)	PPM1N (ENSUAMG00000020209)	RTN2 (ENSUAMG00000020208)	FOSB (ENSUAMG00000020207)	ERCC1 (ENSUAMG00000020205)	POLR1G (ENSUAMG00000020204)	PPP1R13L (ENSUAMG00000020203)	ENSUAMG00000020202	ERCC2 (ENSUAMG00000019562)	KLC3 (ENSUAMG00000019549)	ENSUAMG00000019548	CKM (ENSUAMG00000019547) ##22	MARK4 (ENSUAMG00000019418)	EXOC3L2 (ENSUAMG00000019417)
Eulipotyphla	ANCESTRAL SPECIES	477															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555
Hedgehog	MODERN SPECIES	8959															ERCC2 (ENSEEUG00000010569)	CKM (ENSEEUG00000010522) ##22	MARK4 (ENSEEUG00000010403)
Common shrew	MODERN SPECIES	7100																ENSSARG00000007880 ##22	ENSSARG00000007858
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Xenarthra	ANCESTRAL SPECIES	769											ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555
Armadillo	MODERN SPECIES	459											ERCC1 (ENSDNOG00000040226)	POLR1G (ENSDNOG00000041816)	PPP1R13L (ENSDNOG00000033571)	ERCC2 (ENSDNOG00000010904)	KLC3 (ENSDNOG00000049555)	CKM (ENSDNOG00000005772) ##22	MARK4 (ENSDNOG00000041432)
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000163913	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Hyrax	MODERN SPECIES	7108																CKM (ENSPCAG00000016007) ##22	ENSPCAG00000015918
Elephant	MODERN SPECIES	375	SIX5 (ENSLAFG00000030935)	QPCTL (ENSLAFG00000004208)	SNRPD2 (ENSLAFG00000004205)	FBXO46 (ENSLAFG00000027244)	GIPR (ENSLAFG00000027053)	EML2 (ENSLAFG00000031949)	ENSLAFG00000028620	ENSLAFG00000027518	VASP (ENSLAFG00000026860)	RTN2 (ENSLAFG00000028220)	FOSB (ENSLAFG00000008834)	ERCC1 (ENSLAFG00000001829)	POLR1G (ENSLAFG00000001827)	PPP1R13L (ENSLAFG00000001823)	ERCC2 (ENSLAFG00000006888)	CKM (ENSLAFG00000022873) ##22	MARK4 (ENSLAFG00000011196)	ENSLAFG00000032528	ENSLAFG00000030383	TRAPPC6A (ENSLAFG00000012046)	NKPD1 (ENSLAFG00000012043)	PPP1R37 (ENSLAFG00000018620)	GEMIN7 (ENSLAFG00000016380)	ZNF296 (ENSLAFG00000029107)	CLASRP (ENSLAFG00000008075)	RELB (ENSLAFG00000008071)	CLPTM1 (ENSLAFG00000008066)	APOC2 (ENSLAFG00000027825)	ENSLAFG00000014178	APOC1 (ENSLAFG00000014179)	APOE (ENSLAFG00000014329)
Sauria	ANCESTRAL SPECIES	34	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b
Lepidosauria	ANCESTRAL SPECIES	143							ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b
Episquamata	ANCESTRAL SPECIES	21	ENSGT00390000014835	ENSGT00940000161313	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01000000219624	ENSGT00940000162064.c.a.a.a.a.b.a	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00450000040362	ENSGT00390000011275	ENSGT00940000164086	ENSGT00940000160655
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000161203	ENSGT00390000014835	ENSGT00940000161313	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01000000219624	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00390000011275	ENSGT00940000164086	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900	ENSGT00950000182767.b.a.b.b.b
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000160922	ENSGT00940000161203	ENSGT00390000014835	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01000000219624	ENSGT00390000011275	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900	ENSGT00390000007046.b.a.b	ENSGT00390000012368
Elapidae_a	ANCESTRAL SPECIES	71	ENSGT00940000161203	ENSGT00390000014835	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT01100000264206	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01000000219624	ENSGT00390000011275	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900	ENSGT00390000007046.b.a.b	ENSGT00390000012368
Acanthophiinae	ANCESTRAL SPECIES	69			ENSGT00940000161203.m	ENSGT00390000014835	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01100000264206	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00390000011275	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000162522	ENSGT00940000160655	ENSGT00940000159399	ENSGT00390000007046.b.a.b	ENSGT00390000012368	ENSGT00940000160033.b
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	806															ENSNSUG00000005019	ENSNSUG00000005018 ##22	ENSNSUG00000005017	ENSNSUG00000005016	ENSNSUG00000005015	ENSNSUG00000005014
Mainland tiger snake	MODERN SPECIES	807																ENSNSUG00000005023 ##22	ENSNSUG00000005024	ENSNSUG00000005026	ENSNSUG00000005028	ENSNSUG00000005029	ENSNSUG00000005031
Mainland tiger snake	MODERN SPECIES	809																ENSNSUG00000005048 ##22	ENSNSUG00000005053	ENSNSUG00000005057	ENSNSUG00000005060	ENSNSUG00000005061	ENSNSUG00000005062
Mainland tiger snake	MODERN SPECIES	808															ENSNSUG00000005045	ENSNSUG00000005040 ##22	ENSNSUG00000005039	ENSNSUG00000005038	ENSNSUG00000005037	ENSNSUG00000005035
Eastern brown snake	MODERN SPECIES	170	ENSPTXG00000011309	SYCN (ENSPTXG00000011315)	PAK4 (ENSPTXG00000011316)	ACP7 (ENSPTXG00000011317)	FBXO27 (ENSPTXG00000011318)	EML2 (ENSPTXG00000011349)	GPR4 (ENSPTXG00000014693)	OPA3 (ENSPTXG00000014694)	VASP (ENSPTXG00000014696)	ENSPTXG00000014697	FOSB (ENSPTXG00000014699)	ENSPTXG00000014701	PPP1R13L (ENSPTXG00000014702)	ERCC2 (ENSPTXG00000014706)	ENSPTXG00000014736	CKM (ENSPTXG00000014737) ##22	ENSPTXG00000014738	MARK4 (ENSPTXG00000014739)	EXOC3L2 (ENSPTXG00000014741)	ERCC1 (ENSPTXG00000014742)	ENSPTXG00000014743	ENSPTXG00000014744	ENSPTXG00000014757	ENSPTXG00000016538	ENSPTXG00000016540	ENSPTXG00000017664	CYP2F1 (ENSPTXG00000017665)	ENSPTXG00000017667	RAB4B (ENSPTXG00000017668)	SNRPA (ENSPTXG00000017669)	ACTMAP (ENSPTXG00000017670)
Blue-lipped sea krait	MODERN SPECIES	2070									ENSLLTG00000001353	ENSLLTG00000001342	FOSB (ENSLLTG00000001328)	PPP1R13L (ENSLLTG00000001309)	ERCC2 (ENSLLTG00000001275)	ENSLLTG00000001248	ENSLLTG00000001234	CKM (ENSLLTG00000001202) ##22	MARK4 (ENSLLTG00000001168)	EXOC3L2 (ENSLLTG00000001143)	ENSLLTG00000001126	ERCC1 (ENSLLTG00000001111)
Indian cobra	MODERN SPECIES	11	LRFN3 (ENSNNAG00000010351)	SYCN (ENSNNAG00000010388)	ENSNNAG00000010396	ACP7 (ENSNNAG00000010434)	FBXO27 (ENSNNAG00000010453)	EML2 (ENSNNAG00000011004)	GPR4 (ENSNNAG00000017267)	ENSNNAG00000017275	VASP (ENSNNAG00000017281)	ENSNNAG00000017289	ENSNNAG00000017295	FOSB (ENSNNAG00000017301)	PPP1R13L (ENSNNAG00000017307)	ERCC2 (ENSNNAG00000017319)	ENSNNAG00000017333	CKM (ENSNNAG00000017344) ##22	MARK4 (ENSNNAG00000017376)	EXOC3L2 (ENSNNAG00000017458)	ENSNNAG00000017468	ERCC1 (ENSNNAG00000017477)	ENSNNAG00000017487	ENSNNAG00000017573	ENSNNAG00000018314	ENSNNAG00000017917	ENSNNAG00000018320	ENSNNAG00000018326	EGLN2 (ENSNNAG00000018329)	RAB4B (ENSNNAG00000018334)	SNRPA (ENSNNAG00000018339)	ACTMAP (ENSNNAG00000018342)	ITPKC (ENSNNAG00000018346)
Lizard	MODERN SPECIES	2148																ENSACAG00000005396 ##22
Laterata	ANCESTRAL SPECIES	17	ENSGT00390000014835	ENSGT00940000161313	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01000000219624	ENSGT00940000155736.D.d	ENSGT00940000162064.c.a.a.a.a.b.a	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b.b	ENSGT00940000164086	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000009299	ENSPMRG00000009277	ENSPMRG00000009265	ENSPMRG00000009257	ENSPMRG00000009248	ENSPMRG00000009241	ENSPMRG00000009239	ENSPMRG00000009231	ENSPMRG00000009222	ENSPMRG00000009219	ENSPMRG00000009213	ERCC1 (ENSPMRG00000009198)	ENSPMRG00000009193	EXOC3L2 (ENSPMRG00000009183)	ENSPMRG00000009180	ENSPMRG00000015349 ##22	MARK4 (ENSPMRG00000015345)	ENSPMRG00000015340	ENSPMRG00000015331 ##22	ENSPMRG00000015321	ERCC2 (ENSPMRG00000015033)	ENSPMRG00000014958	PPP1R13L (ENSPMRG00000014946)	ENSPMRG00000014936	FOSB (ENSPMRG00000014931)	RTN2 (ENSPMRG00000014914)	ENSPMRG00000014904	ENSPMRG00000014898	ENSPMRG00000014895	ENSPMRG00000014887	ENSPMRG00000014882
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000014858	OPA3 (ENSPMRG00000014861)	ENSPMRG00000014868	ENSPMRG00000014882	ENSPMRG00000014887	ENSPMRG00000014895	ENSPMRG00000014898	ENSPMRG00000014904	RTN2 (ENSPMRG00000014914)	FOSB (ENSPMRG00000014931)	ENSPMRG00000014936	PPP1R13L (ENSPMRG00000014946)	ENSPMRG00000014958	ERCC2 (ENSPMRG00000015033)	ENSPMRG00000015321	ENSPMRG00000015331 ##22	ENSPMRG00000015340	MARK4 (ENSPMRG00000015345)	ENSPMRG00000015349 ##22	ENSPMRG00000009180	EXOC3L2 (ENSPMRG00000009183)	ENSPMRG00000009193	ERCC1 (ENSPMRG00000009198)	ENSPMRG00000009213	ENSPMRG00000009219	ENSPMRG00000009222	ENSPMRG00000009231	ENSPMRG00000009239	ENSPMRG00000009241	ENSPMRG00000009248	ENSPMRG00000009257
Argentine black and white tegu	MODERN SPECIES	153																CKM (ENSSMRG00000000242) ##22	ENSSMRG00000000273	MARK4 (ENSSMRG00000000288)	EXOC3L2 (ENSSMRG00000000356)	ENSSMRG00000000403	ENSSMRG00000000421	ENSSMRG00000000455	ENSSMRG00000000471	ENSSMRG00000000500	ENSSMRG00000001578	ENSSMRG00000002229	ENSSMRG00000002479	ENSSMRG00000002480	ENSSMRG00000002485	RAB4B (ENSSMRG00000002487)	ENSSMRG00000002488
tuatara	MODERN SPECIES	624	ENSSPUG00000010601	ENSSPUG00000010612	ENSSPUG00000010627	ENSSPUG00000010645	ENSSPUG00000010659	ENSSPUG00000010669	PPP1R37 (ENSSPUG00000010678)	GEMIN7 (ENSSPUG00000010715)	CLASRP (ENSSPUG00000010734)	RELB (ENSSPUG00000010794)	CLPTM1 (ENSSPUG00000010814)	ENSSPUG00000010842	ERCC1 (ENSSPUG00000010856)	PPP1R13L (ENSSPUG00000010875)	ERCC2 (ENSSPUG00000010890)	CKM (ENSSPUG00000010970) ##22	ENSSPUG00000010983	MARK4 (ENSSPUG00000010995)	EXOC3L2 (ENSSPUG00000011049)	EML2 (ENSSPUG00000011075)	OPA3 (ENSSPUG00000011122)	VASP (ENSSPUG00000011133)	ENSSPUG00000011151	ENSSPUG00000011163	ENSSPUG00000011187	ENSSPUG00000011196	ENSSPUG00000011225	ENSSPUG00000011236	ENSSPUG00000011241	ENSSPUG00000011252	ACP7 (ENSSPUG00000011268)
Archelosauria	ANCESTRAL SPECIES	33			ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a
Archosauria	ANCESTRAL SPECIES	62						ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156765	ENSGT00390000009795	ENSGT00530000064222.a	ENSGT00390000003107.b
Aves	ANCESTRAL SPECIES	62						ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156765	ENSGT00390000009795	ENSGT00530000064222.a	ENSGT00390000003107.b
African ostrich	MODERN SPECIES	375															ERCC2 (ENSSCUG00000000746)	CKM (ENSSCUG00000000749) ##22	ENSSCUG00000000752	ENSSCUG00000000756
Neognathae	ANCESTRAL SPECIES	49	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000156119.v	ENSGT00550000075063	ENSGT00940000160719	ENSGT00940000163335	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b ##22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b ##22
Japanese quail	MODERN SPECIES	151															ENSCJPG00005000570	ENSCJPG00005000564 ##22
Neognathae_b	ANCESTRAL SPECIES	46	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000156119.v	ENSGT00550000075063	ENSGT00940000160719	ENSGT00940000163335	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877
Neognathae_c	ANCESTRAL SPECIES	94															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877
Golden eagle	MODERN SPECIES	88													SUPT5H (ENSACCG00020016499)	TIMM50 (ENSACCG00020016532)	ERCC2 (ENSACCG00020016536)	CKM (ENSACCG00020016538) ##22	ENSACCG00020016543	ENSACCG00020016546
Passeriformes	ANCESTRAL SPECIES	159																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Passeriformes_d	ANCESTRAL SPECIES	152																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Passeriformes_g	ANCESTRAL SPECIES	153																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Passeroidea	ANCESTRAL SPECIES	162																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Zebra finch	MODERN SPECIES	80												RYR1 (ENSTGUG00000026818)	ENSTGUG00000024026	ENSTGUG00000018858	ENSTGUG00000020063	CKM (ENSTGUG00000025089) ##22	ENSTGUG00000021327	ENSTGUG00000024998	ENSTGUG00000026245	ENSTGUG00000021543	ENSTGUG00000018840	ENSTGUG00000024711	ENSTGUG00000025753	ENSTGUG00000019200	ENSTGUG00000028831	ENSTGUG00000028993	ENSTGUG00000028329	ENSTGUG00000028966	ENSTGUG00000028466	ENSTGUG00000018937	ENSTGUG00000021349
Medium ground finch	MODERN SPECIES	676																ENSGFOG00000010952 ##22
Cryptodira	ANCESTRAL SPECIES	35		ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT01100000263552.h.b.t.f	ENSGT00650000093443.x	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00390000010750.b	ENSGT00390000000190	ENSGT00940000156783	ENSGT00940000157969	ENSGT00940000161850
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000157454	ENSGT01100000263552.h.b.t.f	ENSGT00650000093443.x	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006.l.a	ENSGT00940000161006.l.b	ENSGT00940000154133.B
Testudinidae	ANCESTRAL SPECIES	36					ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000157454	ENSGT01100000263552.h.b.t.f	ENSGT00650000093443.x	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000156265.x.b.a.a.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006.l.a	ENSGT00940000162008
Goode s thornscrub tortoise	MODERN SPECIES	134	CLPTM1 (ENSGEVG00005013296)	ENSGEVG00005013272	ERCC1 (ENSGEVG00005013251)	ENSGEVG00005013236	PPP1R37 (ENSGEVG00005013199)	ENSGEVG00005013133	NKPD1 (ENSGEVG00005013100)	ENSGEVG00005013072	TRAPPC6A (ENSGEVG00005013046)	BLOC1S3 (ENSGEVG00005016094)	ENSGEVG00005016063	PPP1R13L (ENSGEVG00005015922)	ERCC2 (ENSGEVG00005015881)	ENSGEVG00005015173	ENSGEVG00005015014	CKM (ENSGEVG00005014945) ##22	MARK4 (ENSGEVG00005014914)	EXOC3L2 (ENSGEVG00005014812)	ENSGEVG00005014723	ENSGEVG00005014700	FOSB (ENSGEVG00005014621)	ENSGEVG00005014552	ENSGEVG00005014505	ENSGEVG00005014415	VASP (ENSGEVG00005014375)	OPA3 (ENSGEVG00005014359)	GPR4 (ENSGEVG00005014339)	EML2 (ENSGEVG00005010764)	ENSGEVG00005009904	ENSGEVG00005009827	FBXO46 (ENSGEVG00005009811)
Abingdon island giant tortoise	MODERN SPECIES	2009	ERCC1 (ENSCABG00000007991)	PPP1R37 (ENSCABG00000007999)	ENSCABG00000008004	NKPD1 (ENSCABG00000008005)	ENSCABG00000008007	TRAPPC6A (ENSCABG00000008009)	BLOC1S3 (ENSCABG00000008011)	ENSCABG00000008015	ENSCABG00000008023	ENSCABG00000008025	PPP1R13L (ENSCABG00000008029)	ENSCABG00000008033	ERCC2 (ENSCABG00000008035)	ENSCABG00000008039	ENSCABG00000008040	CKM (ENSCABG00000008042) ##22	MARK4 (ENSCABG00000008045)	EXOC3L2 (ENSCABG00000008050)	ENSCABG00000008051	ENSCABG00000008052	ENSCABG00000008054	ENSCABG00000008055	FOSB (ENSCABG00000008056)	ENSCABG00000008057	ENSCABG00000008059	ENSCABG00000008061	ENSCABG00000008063	EML2 (ENSCABG00000008161)	ENSCABG00000013274	QPCTL (ENSCABG00000013296)	ENSCABG00000013500
Emydidae	ANCESTRAL SPECIES	77	ENSGT00390000018039	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00510000048522	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.v	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006.l.a.b	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203
Three-toed box turtle	MODERN SPECIES	252	RELB (ENSTMTG00000007484)	CLASRP (ENSTMTG00000007459)	ENSTMTG00000007445	ENSTMTG00000007364	ENSTMTG00000007324	ENSTMTG00000007285	PPP1R37 (ENSTMTG00000007263)	ENSTMTG00000007108	TRAPPC6A (ENSTMTG00000007076)	ENSTMTG00000007067	ENSTMTG00000007039	ENSTMTG00000007035	PPP1R13L (ENSTMTG00000006938)	ENSTMTG00000006907	ENSTMTG00000006897	CKM (ENSTMTG00000006864) ##22	ENSTMTG00000006854	ENSTMTG00000006830	EXOC3L2 (ENSTMTG00000006808)	ENSTMTG00000006798	FOSB (ENSTMTG00000006785)	ENSTMTG00000006752	EML2 (ENSTMTG00000003755)	ENSTMTG00000003421	ENSTMTG00000003409	QPCTL (ENSTMTG00000003398)	ENSTMTG00000003368	NOVA2 (ENSTMTG00000003357)	MYPOP (ENSTMTG00000003346)	IRF2BP1 (ENSTMTG00000003331)	ENSTMTG00000008031
painted turtle	MODERN SPECIES	974	CLASRP (ENSCPBG00000014391)	RELB (ENSCPBG00000014390)	CLPTM1 (ENSCPBG00000014389)	ENSCPBG00000014387	ERCC1 (ENSCPBG00000014385)	ENSCPBG00000014383	PPP1R37 (ENSCPBG00000014378)	NKPD1 (ENSCPBG00000014375)	ENSCPBG00000014374	TRAPPC6A (ENSCPBG00000014372)	BLOC1S3 (ENSCPBG00000014370)	ENSCPBG00000014369	ENSCPBG00000014368	PPP1R13L (ENSCPBG00000014365)	ENSCPBG00000014363	CKM (ENSCPBG00000014362) ##22	MARK4 (ENSCPBG00000014222)
Cyclostomata	ANCESTRAL SPECIES	1122																ENSGT00950000182772.A.a.a ##22	ENSGT00940000154862.bb
Hagfish	MODERN SPECIES	1504	ENSEBUG00000009121	ENSEBUG00000015909	ENSEBUG00000004465	ENSEBUG00000012539	ENSEBUG00000004338	poldip2 (ENSEBUG00000006270)	ENSEBUG00000014917	ENSEBUG00000013527	ENSEBUG00000008599	ENSEBUG00000011063	ENSEBUG00000008970	ENSEBUG00000008954	ENSEBUG00000015674	ENSEBUG00000010543	ENSEBUG00000013421	ckmb (ENSEBUG00000016175) ##22	ENSEBUG00000003878	ENSEBUG00000007491	ENSEBUG00000004172	blcap (ENSEBUG00000015666)	KCNF1 (ENSEBUG00000011427)	SLCO4A1 (ENSEBUG00000005183)	RHOB (ENSEBUG00000002113)	uqcc1 (ENSEBUG00000015220)	ENSEBUG00000013043	ENSEBUG00000003592	ENSEBUG00000000607
Vertebrata	ANCESTRAL SPECIES	520																ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862
Gnathostomata	ANCESTRAL SPECIES	13	ENSGT00390000018900	ENSGT00940000178689	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000265079	ENSGT00950000182772.A.a.a ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00390000001205.b
Elephant shark	MODERN SPECIES	1494	tmem179aa (ENSCMIG00000013526)	KIF26A (ENSCMIG00000013532)	ENSCMIG00000013537	tdrd9 (ENSCMIG00000013578)	aspg (ENSCMIG00000013645)	ENSCMIG00000013647	RD3L (ENSCMIG00000013650)	atp5mj (ENSCMIG00000013653)	ppp1r13bb (ENSCMIG00000013665)	zfyve21 (ENSCMIG00000013690)	xrcc3 (ENSCMIG00000013699)	KLC1 (ENSCMIG00000013712)	coa8 (ENSCMIG00000013723)	bag5 (ENSCMIG00000013724)	trmt61a (ENSCMIG00000013726)	ckba (ENSCMIG00000013738) ##22	ENSCMIG00000013762	mark3a (ENSCMIG00000014031)	eif5 (ENSCMIG00000014528)	ENSCMIG00000014541	ENSCMIG00000014547	ENSCMIG00000014554	cdc42bpb (ENSCMIG00000014601)	ENSCMIG00000014649	TRAF3 (ENSCMIG00000014656)	rcor1 (ENSCMIG00000014664)	ANKRD9 (ENSCMIG00000014685)	tecpr2 (ENSCMIG00000014694)	cinp (ENSCMIG00000014707)	ENSCMIG00000014716	ENSCMIG00000014719
Euteleostomi	ANCESTRAL SPECIES	15	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT01100000265079	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00390000001205.b
Sarcopterygii	ANCESTRAL SPECIES	7	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000168574	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Coelacanth	MODERN SPECIES	1129								TDRD9 (ENSLACG00000002257)	RD3L (ENSLACG00000005571)	PPP1R13B (ENSLACG00000006143)	KLC1 (ENSLACG00000008984)	XRCC3 (ENSLACG00000008697)	COA8 (ENSLACG00000009922)	BAG5 (ENSLACG00000010107)	TRMT61A (ENSLACG00000010801)	CKB (ENSLACG00000011177) ##22	MARK3 (ENSLACG00000011533)	EIF5 (ENSLACG00000012744)	TNFAIP2 (ENSLACG00000013001)
Tetrapoda	ANCESTRAL SPECIES	23	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Amniota	ANCESTRAL SPECIES	8	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Mammalia	ANCESTRAL SPECIES	16	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Platypus	MODERN SPECIES		AKT1 (ENSOANG00000031179)	ADSS1 (ENSOANG00000005973)	INF2 (ENSOANG00000001085)	ENSOANG00000011958	KIF26A (ENSOANG00000042686)	RD3L (ENSOANG00000000795)	TDRD9 (ENSOANG00000000797)	ATP5MPL (ENSOANG00000043647)	PPP1R13B (ENSOANG00000000793)	ENSOANG00000049279	XRCC3 (ENSOANG00000000792)	BAG5 (ENSOANG00000000627)	KLC1 (ENSOANG00000000786)	TRMT61A (ENSOANG00000000785)	MARK3 (ENSOANG00000000773)	ENSOANG00000042928 ##22	EIF5 (ENSOANG00000000767)	ENSOANG00000009546	CDC42BPB (ENSOANG00000014636)	ENSOANG00000014635	TRAF3 (ENSOANG00000014633)	RCOR1 (ENSOANG00000013917)	ANKRD9 (ENSOANG00000005741)	TECPR2 (ENSOANG00000005740)	MOK (ENSOANG00000005736)	ENSOANG00000005735	ENSOANG00000044415	HSP90AA1 (ENSOANG00000005734)	DYNC1H1 (ENSOANG00000005733)	PPP2R5C (ENSOANG00000005732)	DIO3 (ENSOANG00000046280)
Theria	ANCESTRAL SPECIES	14	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b
Marsupialia_b	ANCESTRAL SPECIES	21	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b
Diprotodontia	ANCESTRAL SPECIES	34	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00520000057711
Diprotodontia_a	ANCESTRAL SPECIES	33	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784.e	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00520000057711
Common wonbat	MODERN SPECIES	455	ENSVURG00010005343	TMEM179 (ENSVURG00010005332)	KIF26A (ENSVURG00010005300)	ASPG (ENSVURG00010005231)	RD3L (ENSVURG00010005206)	TDRD9 (ENSVURG00010005150)	ENSVURG00010005115	PPP1R13B (ENSVURG00010005071)	ZFYVE21 (ENSVURG00010005038)	XRCC3 (ENSVURG00010005008)	KLC1 (ENSVURG00010004931)	ENSVURG00010004907	BAG5 (ENSVURG00010004901)	TRMT61A (ENSVURG00010004892)	ENSVURG00010004878	CKB (ENSVURG00010004865) ##22	MARK3 (ENSVURG00010004765)	EIF5 (ENSVURG00010004689)	ENSVURG00010004651	ENSVURG00010004614	ENSVURG00010004567	CDC42BPB (ENSVURG00010004507)	TRAF3 (ENSVURG00010004468)	RCOR1 (ENSVURG00010004417)	ANKRD9 (ENSVURG00010004403)	TECPR2 (ENSVURG00010004386)	ENSVURG00010004374	ENSVURG00010004363	MOK (ENSVURG00010004348)	WDR20 (ENSVURG00010004298)	ENSVURG00010004274
koala	MODERN SPECIES	213				KIF26A (ENSPCIG00000004452)	ASPG (ENSPCIG00000020604)	TDRD9 (ENSPCIG00000016427)	RD3L (ENSPCIG00000026951)	ATP5MJ (ENSPCIG00000018696)	PPP1R13B (ENSPCIG00000015919)	ZFYVE21 (ENSPCIG00000015993)	XRCC3 (ENSPCIG00000015995)	KLC1 (ENSPCIG00000016002)	COA8 (ENSPCIG00000016006)	BAG5 (ENSPCIG00000016008)	TRMT61A (ENSPCIG00000011257)	CKB (ENSPCIG00000011263) ##22	MARK3 (ENSPCIG00000011285)	ENSPCIG00000011312	EIF5 (ENSPCIG00000011319)	ENSPCIG00000011331	ENSPCIG00000011346	CDC42BPB (ENSPCIG00000011362)	TRAF3 (ENSPCIG00000026593)	RCOR1 (ENSPCIG00000011375)	ENSPCIG00000028110	ANKRD9 (ENSPCIG00000015051)	TECPR2 (ENSPCIG00000015052)	ENSPCIG00000015076	ENSPCIG00000015079	MOK (ENSPCIG00000025176)	ENSPCIG00000025178
Wallaby	DUPLICATION
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	187																ENSMEUG00000002979 ##22
Wallaby	MODERN SPECIES	13892																ENSMEUG00000001290 ##22
Wallaby	MODERN SPECIES	12845														ENSMEUG00000005849	ENSMEUG00000005854	ENSMEUG00000005858 ##22
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	1	TMEM179 (ENSSHAG00000030269)	ENSSHAG00000027215	ENSSHAG00000026217	KIF26A (ENSSHAG00000011581)	ASPG (ENSSHAG00000012851)	TDRD9 (ENSSHAG00000013742)	RD3L (ENSSHAG00000014495)	ATP5MJ (ENSSHAG00000014580)	PPP1R13B (ENSSHAG00000015159)	ZFYVE21 (ENSSHAG00000015314)	XRCC3 (ENSSHAG00000015422)	KLC1 (ENSSHAG00000015545)	COA8 (ENSSHAG00000028665)	BAG5 (ENSSHAG00000028616)	TRMT61A (ENSSHAG00000029389)	ENSSHAG00000016459 ##22	MARK3 (ENSSHAG00000016567)	EIF5 (ENSSHAG00000017066)	ENSSHAG00000001873	ENSSHAG00000029726	ENSSHAG00000001823	ENSSHAG00000028259	ENSSHAG00000022704	CDC42BPB (ENSSHAG00000006579)	ENSSHAG00000008188	TRAF3 (ENSSHAG00000009189)	RCOR1 (ENSSHAG00000005101)	ANKRD9 (ENSSHAG00000028717)	TECPR2 (ENSSHAG00000006435)	CINP (ENSSHAG00000023361)	ENSSHAG00000007834
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000010697	KDR (ENSSHAG00000008488)	SRD5A3 (ENSSHAG00000006811)	TMEM165 (ENSSHAG00000006313)	CLOCK (ENSSHAG00000005555)	ENSSHAG00000028318	EXOC1L (ENSSHAG00000022445)	EXOC1 (ENSSHAG00000009279)	CEP135 (ENSSHAG00000008361)	CRACD (ENSSHAG00000026554)	AASDH (ENSSHAG00000004611)	ENSSHAG00000002861	ENSSHAG00000001748	SRP72 (ENSSHAG00000028812)	ENSSHAG00000020703	ENSSHAG00000003724 ##22	ENSSHAG00000000263	ENSSHAG00000029827	ENSSHAG00000028479	NOA1 (ENSSHAG00000022053)	POLR2B (ENSSHAG00000016080)	IGFBP7 (ENSSHAG00000026079)	ADGRL3 (ENSSHAG00000010680)	TECRL (ENSSHAG00000029045)	EPHA5 (ENSSHAG00000017029)	ENSSHAG00000009376	STAP1 (ENSSHAG00000008776)	UBA6 (ENSSHAG00000008202)	GNRHR (ENSSHAG00000007827)	ENSSHAG00000006941	TMPRSS11D (ENSSHAG00000005958)
Opossum	MODERN SPECIES		TMEM179 (ENSMODG00000013642)	ENSMODG00000013636	ASPG (ENSMODG00000013615)	TDRD9 (ENSMODG00000013609)	RD3L (ENSMODG00000028050)	ENSMODG00000048373	ATP5MJ (ENSMODG00000025740)	PPP1R13B (ENSMODG00000013546)	ZFYVE21 (ENSMODG00000013535)	XRCC3 (ENSMODG00000013528)	KLC1 (ENSMODG00000013523)	ENSMODG00000021463	COA8 (ENSMODG00000050823)	BAG5 (ENSMODG00000023834)	TRMT61A (ENSMODG00000013507)	CKB (ENSMODG00000013504) ##22	MARK3 (ENSMODG00000013489)	EIF5 (ENSMODG00000013424)	ENSMODG00000041052	ENSMODG00000013430	ENSMODG00000013417	ENSMODG00000046265	ENSMODG00000041115	CDC42BPB (ENSMODG00000013407)	ENSMODG00000049771	ENSMODG00000013361	TRAF3 (ENSMODG00000013357)	ENSMODG00000028617	RCOR1 (ENSMODG00000013350)	ANKRD9 (ENSMODG00000013335)	TECPR2 (ENSMODG00000013332)
Eutheria	ANCESTRAL SPECIES	12	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Atlantogenata	ANCESTRAL SPECIES	102	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a
Afrotheria	ANCESTRAL SPECIES	129	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a
Afrotheria_a	ANCESTRAL SPECIES	132	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a
Elephant	MODERN SPECIES	602	AKT1 (ENSLAFG00000027344)	SIVA1 (ENSLAFG00000014514)	ADSS1 (ENSLAFG00000013331)	ENSLAFG00000027091	TMEM179 (ENSLAFG00000006445)	ENSLAFG00000026667	KIF26A (ENSLAFG00000022951)	ASPG (ENSLAFG00000031455)	TDRD9 (ENSLAFG00000007580)	PPP1R13B (ENSLAFG00000012542)	ZFYVE21 (ENSLAFG00000012540)	XRCC3 (ENSLAFG00000010642)	KLC1 (ENSLAFG00000002499)	BAG5 (ENSLAFG00000023130)	TRMT61A (ENSLAFG00000014714)	CKB (ENSLAFG00000031612) ##22	MARK3 (ENSLAFG00000005376)	ENSLAFG00000017777	ATG2B (ENSLAFG00000016704)	GSKIP (ENSLAFG00000014641)	AK7 (ENSLAFG00000014643)	PAPOLA (ENSLAFG00000000946)	VRK1 (ENSLAFG00000008883)	BCL11B (ENSLAFG00000009254)	SETD3 (ENSLAFG00000018555)	CCNK (ENSLAFG00000027530)	HHIPL1 (ENSLAFG00000013235)	CYP46A1 (ENSLAFG00000000543)	EML1 (ENSLAFG00000004885)	EVL (ENSLAFG00000003748)	DEGS2 (ENSLAFG00000026042)
Tenrec	MODERN SPECIES	7056															TRMT61A (ENSETEG00000008670)	CKB (ENSETEG00000008667) ##22	MARK3 (ENSETEG00000008658)
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478.i.b	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478.i.b	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00940000164834	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Tree shrew	MODERN SPECIES	10495																CKB (ENSTBEG00000005675) ##22
Glires	ANCESTRAL SPECIES	12	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Lagomorpha	ANCESTRAL SPECIES	132							ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b.t	ENSGT00940000156103
Pika	MODERN SPECIES	3028															TRMT61A (ENSOPRG00000009039)	CKB (ENSOPRG00000009015) ##22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	484								ASPG (ENSOCUG00000023219)	TDRD9 (ENSOCUG00000014788)	RD3L (ENSOCUG00000039245)	ENSOCUG00000017262	PPP1R13B (ENSOCUG00000010462)	ENSOCUG00000023816	XRCC3 (ENSOCUG00000024574)	KLC1 (ENSOCUG00000012446)	ENSOCUG00000008818 ##22	TRMT61A (ENSOCUG00000022502)	MARK3 (ENSOCUG00000016664)	ENSOCUG00000036466	EIF5 (ENSOCUG00000027975)	TNFAIP2 (ENSOCUG00000011484)	EXOC3L4 (ENSOCUG00000023363)	ENSOCUG00000038309	CDC42BPB (ENSOCUG00000010323)	TRAF3 (ENSOCUG00000003672)	TECPR2 (ENSOCUG00000015804)	RCOR1 (ENSOCUG00000003324)	CINP (ENSOCUG00000026866)	ZNF839 (ENSOCUG00000014486)	MOK (ENSOCUG00000013870)	WDR20 (ENSOCUG00000001281)
Rabbit	MODERN SPECIES	433	LDOC1 (ENSOCUG00000023824)	ENSOCUG00000024673	ENSOCUG00000036101	ENSOCUG00000025072	SOX3 (ENSOCUG00000016779)	ENSOCUG00000025136	ENSOCUG00000012140	ENSOCUG00000022633	ATP11C (ENSOCUG00000013087)	MCF2 (ENSOCUG00000027534)	F9 (ENSOCUG00000005240)	ENSOCUG00000030193	ENSOCUG00000033447	ENSOCUG00000012713	ENSOCUG00000006218	ENSOCUG00000027525 ##22	ZIC3 (ENSOCUG00000009358)	ENSOCUG00000032516	ENSOCUG00000035410
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Muroidea	ANCESTRAL SPECIES	16	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Golden Hamster	MODERN SPECIES	630	Inf2 (ENSMAUG00000009995)	Tmem179 (ENSMAUG00000001149)	A530016L24Rik (ENSMAUG00000009851)	Kif26a (ENSMAUG00000020776)	Aspg (ENSMAUG00000015535)	Tdrd9 (ENSMAUG00000020617)	Rd3l (ENSMAUG00000013408)	ENSMAUG00000012836	Ppp1r13b (ENSMAUG00000001128)	ENSMAUG00000021878	Xrcc3 (ENSMAUG00000021117)	ENSMAUG00000004564	Coa8 (ENSMAUG00000019799)	Bag5 (ENSMAUG00000012615)	Trmt61a (ENSMAUG00000007728)	Ckb (ENSMAUG00000012909) ##22	Mark3 (ENSMAUG00000009057)	Eif5 (ENSMAUG00000001058)	Tnfaip2 (ENSMAUG00000012833)	Exoc3l4 (ENSMAUG00000022110)	Lbhd2 (ENSMAUG00000020246)	Cdc42bpb (ENSMAUG00000022059)	Traf3 (ENSMAUG00000021686)	Ankrd9 (ENSMAUG00000019567)	Tecpr2 (ENSMAUG00000011919)	ENSMAUG00000000734	Zfp839 (ENSMAUG00000001267)	Mok (ENSMAUG00000015386)	ENSMAUG00000020978	1700001K19Rik (ENSMAUG00000019531)	Dync1h1 (ENSMAUG00000022224)
Chinese hamster chok1gshd	MODERN SPECIES	266	Inf2 (ENSCGRG00001003961)	Tmem179 (ENSCGRG00001018078)	A530016L24Rik (ENSCGRG00001020089)	Kif26a (ENSCGRG00001017284)	Aspg (ENSCGRG00001020993)	Tdrd9 (ENSCGRG00001023336)	Rd3l (ENSCGRG00001000482)	Atp5mpl (ENSCGRG00001000674)	Ppp1r13b (ENSCGRG00001004903)	Zfyve21 (ENSCGRG00001009837)	Xrcc3 (ENSCGRG00001011253)	Klc1 (ENSCGRG00001013287)	Coa8 (ENSCGRG00001020208)	Bag5 (ENSCGRG00001014270)	Trmt61a (ENSCGRG00001020952)	Ckb (ENSCGRG00001021206) ##22	Mark3 (ENSCGRG00001017890)	ENSCGRG00001023334	Gm266 (ENSCGRG00001014678)	Tnfaip2 (ENSCGRG00001008498)	Exoc3l4 (ENSCGRG00001011425)	Lbhd2 (ENSCGRG00001012003)	Cdc42bpb (ENSCGRG00001017235)	Amn (ENSCGRG00001010221)	Traf3 (ENSCGRG00001012901)	Rcor1 (ENSCGRG00001020214)	Ankrd9 (ENSCGRG00001021240)	Tecpr2 (ENSCGRG00001022916)	Cinp (ENSCGRG00001004209)	ENSCGRG00001010768	Mok (ENSCGRG00001012968)
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Northern American deer mouse	MODERN SPECIES	5	Inf2 (ENSPEMG00000000569)	Tmem179 (ENSPEMG00000012685)	A530016L24Rik (ENSPEMG00000001566)	Kif26a (ENSPEMG00000007760)	Aspg (ENSPEMG00000009783)	Rd3l (ENSPEMG00000017732)	Tdrd9 (ENSPEMG00000012496)	ENSPEMG00000024643	Ppp1r13b (ENSPEMG00000014348)	Zfyve21 (ENSPEMG00000023106)	Xrcc3 (ENSPEMG00000012323)	Klc1 (ENSPEMG00000015453)	Coa8 (ENSPEMG00000013261)	Bag5 (ENSPEMG00000030905)	Trmt61a (ENSPEMG00000023413)	Ckb (ENSPEMG00000017185) ##22	Mark3 (ENSPEMG00000010472)	Eif5 (ENSPEMG00000015312)	Gm266 (ENSPEMG00000029489)	Tnfaip2 (ENSPEMG00000000511)	Exoc3l4 (ENSPEMG00000006944)	Lbhd2 (ENSPEMG00000024190)	Cdc42bpb (ENSPEMG00000023339)	Amn (ENSPEMG00000006540)	Traf3 (ENSPEMG00000022996)	Rcor1 (ENSPEMG00000028079)	Ankrd9 (ENSPEMG00000024255)	Tecpr2 (ENSPEMG00000021467)	Cinp (ENSPEMG00000022134)	Zfp839 (ENSPEMG00000024097)	Mok (ENSPEMG00000022583)
Prairie vole	MODERN SPECIES		Inf2 (ENSMOCG00000015901)	Tmem179 (ENSMOCG00000019593)	A530016L24Rik (ENSMOCG00000005085)	Kif26a (ENSMOCG00000001640)	Aspg (ENSMOCG00000011052)	ENSMOCG00000006567	Tdrd9 (ENSMOCG00000017012)	Atp5mpl (ENSMOCG00000018303)	Ppp1r13b (ENSMOCG00000017048)	Zfyve21 (ENSMOCG00000013746)	Xrcc3 (ENSMOCG00000008144)	Klc1 (ENSMOCG00000016748)	Coa8 (ENSMOCG00000018572)	Bag5 (ENSMOCG00000015176)	Trmt61a (ENSMOCG00000014726)	Ckb (ENSMOCG00000014242) ##22	Mark3 (ENSMOCG00000018347)	ENSMOCG00000021790	Tnfaip2 (ENSMOCG00000011420)	Exoc3l4 (ENSMOCG00000004296)	Lbhd2 (ENSMOCG00000018196)	Cdc42bpb (ENSMOCG00000021696)	ENSMOCG00000017882	Amn (ENSMOCG00000001893)	Traf3 (ENSMOCG00000017772)	Rcor1 (ENSMOCG00000012999)	Ankrd9 (ENSMOCG00000002881)	Tecpr2 (ENSMOCG00000000369)	Cinp (ENSMOCG00000019159)	Mok (ENSMOCG00000016493)	ENSMOCG00000018133
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00860000135782	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Mus	ANCESTRAL SPECIES	10	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00900000143791	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00860000135782	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Mus_A	ANCESTRAL SPECIES	17	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00900000143791	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00860000135782	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Mus_B	ANCESTRAL SPECIES	17	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00900000143791	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00860000135782	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Mus_C	ANCESTRAL SPECIES	11	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00900000143791	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00860000135782	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
spretus	MODERN SPECIES	3	Tmem179 (MGP_SPRETEiJ_G0019000)	A530016L24Rik (MGP_SPRETEiJ_G0018999)	MGP_SPRETEiJ_G0018998	Kif26a (MGP_SPRETEiJ_G0018997)	Aspg (MGP_SPRETEiJ_G0018996)	Rd3l (MGP_SPRETEiJ_G0018995)	Tdrd9 (MGP_SPRETEiJ_G0018994)	Atp5mpl (MGP_SPRETEiJ_G0018993)	Ppp1r13b (MGP_SPRETEiJ_G0018992)	Zfyve21 (MGP_SPRETEiJ_G0018991)	Xrcc3 (MGP_SPRETEiJ_G0018990)	Klc1 (MGP_SPRETEiJ_G0018989)	Coa8 (MGP_SPRETEiJ_G0018988)	Bag5 (MGP_SPRETEiJ_G0018987)	Trmt61a (MGP_SPRETEiJ_G0018986)	Ckb (MGP_SPRETEiJ_G0018985) ##22	Mark3 (MGP_SPRETEiJ_G0018984)	Eif5 (MGP_SPRETEiJ_G0018983)	Gm266 (MGP_SPRETEiJ_G0018982)	Tnfaip2 (MGP_SPRETEiJ_G0018981)	Exoc3l4 (MGP_SPRETEiJ_G0018980)	Lbhd2 (MGP_SPRETEiJ_G0018979)	Cdc42bpb (MGP_SPRETEiJ_G0018978)	Amn (MGP_SPRETEiJ_G0018977)	Traf3 (MGP_SPRETEiJ_G0018976)	MGP_SPRETEiJ_G0018975	Rcor1 (MGP_SPRETEiJ_G0018974)	Ankrd9 (MGP_SPRETEiJ_G0018973)	Tecpr2 (MGP_SPRETEiJ_G0018972)	Cinp (MGP_SPRETEiJ_G0018971)	Zfp839 (MGP_SPRETEiJ_G0018970)
Steppe mouse	MODERN SPECIES	3176													ENSMSIG00000010681	Bag5 (ENSMSIG00000010672)	Trmt61a (ENSMSIG00000010648)	Ckb (ENSMSIG00000010628) ##22	Mark3 (ENSMSIG00000009190)	ENSMSIG00000009125	Eif5 (ENSMSIG00000008970)	Gm266 (ENSMSIG00000008953)	Tnfaip2 (ENSMSIG00000008909)	ENSMSIG00000008902	Exoc3l4 (ENSMSIG00000008877)	Lbhd2 (ENSMSIG00000008862)	ENSMSIG00000008843	Cdc42bpb (ENSMSIG00000008716)	Amn (ENSMSIG00000008673)	Traf3 (ENSMSIG00000008575)	ENSMSIG00000008566	ENSMSIG00000008556	Ankrd9 (ENSMSIG00000008520)
Mouse	MODERN SPECIES	3	Inf2 (ENSMUSG00000037679)	Tmem179 (ENSMUSG00000054013)	A530016L24Rik (ENSMUSG00000043122)	Kif26a (ENSMUSG00000021294)	Aspg (ENSMUSG00000037686)	Rd3l (ENSMUSG00000091402)	Tdrd9 (ENSMUSG00000054003)	Atp5mpl (ENSMUSG00000021290)	Ppp1r13b (ENSMUSG00000021285)	Zfyve21 (ENSMUSG00000021286)	Xrcc3 (ENSMUSG00000021287)	Klc1 (ENSMUSG00000021288)	Coa8 (ENSMUSG00000037787)	Bag5 (ENSMUSG00000049792)	Trmt61a (ENSMUSG00000060950)	Ckb (ENSMUSG00000001270) ##22	Mark3 (ENSMUSG00000007411)	Eif5 (ENSMUSG00000021282)	ENSMUSG00000121570	Gm266 (ENSMUSG00000010529)	Tnfaip2 (ENSMUSG00000021281)	Exoc3l4 (ENSMUSG00000021280)	Lbhd2 (ENSMUSG00000087075)	Cdc42bpb (ENSMUSG00000021279)	Amn (ENSMUSG00000021278)	Traf3 (ENSMUSG00000021277)	Rcor1 (ENSMUSG00000037896)	Ankrd9 (ENSMUSG00000037904)	Tecpr2 (ENSMUSG00000021275)	Cinp (ENSMUSG00000021276)	Zfp839 (ENSMUSG00000021271)
Ryukyu mouse	MODERN SPECIES	3	Tmem179 (MGP_CAROLIEiJ_G0018151)	A530016L24Rik (MGP_CAROLIEiJ_G0018150)	MGP_CAROLIEiJ_G0018149	Kif26a (MGP_CAROLIEiJ_G0018148)	Aspg (MGP_CAROLIEiJ_G0018147)	Rd3l (MGP_CAROLIEiJ_G0018146)	Tdrd9 (MGP_CAROLIEiJ_G0018145)	Atp5mpl (MGP_CAROLIEiJ_G0018144)	Ppp1r13b (MGP_CAROLIEiJ_G0018143)	Zfyve21 (MGP_CAROLIEiJ_G0018142)	Xrcc3 (MGP_CAROLIEiJ_G0018141)	Klc1 (MGP_CAROLIEiJ_G0018140)	MGP_CAROLIEiJ_G0018139	Bag5 (MGP_CAROLIEiJ_G0018138)	Trmt61a (MGP_CAROLIEiJ_G0018137)	Ckb (MGP_CAROLIEiJ_G0018136) ##22	Mark3 (MGP_CAROLIEiJ_G0018135)	MGP_CAROLIEiJ_G0018134	Gm266 (MGP_CAROLIEiJ_G0018133)	Tnfaip2 (MGP_CAROLIEiJ_G0018132)	Exoc3l4 (MGP_CAROLIEiJ_G0018131)	Lbhd2 (MGP_CAROLIEiJ_G0018130)	Cdc42bpb (MGP_CAROLIEiJ_G0018129)	Amn (MGP_CAROLIEiJ_G0018128)	Traf3 (MGP_CAROLIEiJ_G0018127)	MGP_CAROLIEiJ_G0018126	Rcor1 (MGP_CAROLIEiJ_G0018125)	Ankrd9 (MGP_CAROLIEiJ_G0018124)	Tecpr2 (MGP_CAROLIEiJ_G0018123)	MGP_CAROLIEiJ_G0018122	Zfp839 (MGP_CAROLIEiJ_G0018121)
Shrew mouse	MODERN SPECIES	20	Tmem179 (MGP_PahariEiJ_G0029908)	A530016L24Rik (MGP_PahariEiJ_G0029907)	MGP_PahariEiJ_G0029906	Kif26a (MGP_PahariEiJ_G0029905)	Aspg (MGP_PahariEiJ_G0029904)	Rd3l (MGP_PahariEiJ_G0029903)	Tdrd9 (MGP_PahariEiJ_G0029902)	Atp5mpl (MGP_PahariEiJ_G0029901)	Ppp1r13b (MGP_PahariEiJ_G0029900)	Zfyve21 (MGP_PahariEiJ_G0029899)	Xrcc3 (MGP_PahariEiJ_G0029898)	Klc1 (MGP_PahariEiJ_G0029897)	Coa8 (MGP_PahariEiJ_G0029896)	Bag5 (MGP_PahariEiJ_G0029895)	Trmt61a (MGP_PahariEiJ_G0029894)	Ckb (MGP_PahariEiJ_G0029893) ##22	Mark3 (MGP_PahariEiJ_G0029892)	Eif5 (MGP_PahariEiJ_G0029891)	Gm266 (MGP_PahariEiJ_G0029890)	Tnfaip2 (MGP_PahariEiJ_G0029889)	Exoc3l4 (MGP_PahariEiJ_G0029888)	Lbhd2 (MGP_PahariEiJ_G0029887)	Cdc42bpb (MGP_PahariEiJ_G0029886)	Amn (MGP_PahariEiJ_G0029885)	Traf3 (MGP_PahariEiJ_G0029884)	MGP_PahariEiJ_G0029883	Rcor1 (MGP_PahariEiJ_G0029882)	Ankrd9 (MGP_PahariEiJ_G0029881)	Tecpr2 (MGP_PahariEiJ_G0029880)	MGP_PahariEiJ_G0029879	Zfp839 (MGP_PahariEiJ_G0029878)
Rat	MODERN SPECIES	16	Inf2 (ENSRNOG00000028650)	Tmem179 (ENSRNOG00000013128)	C6h14orf180 (ENSRNOG00000013097)	Kif26a (ENSRNOG00000013661)	Aspg (ENSRNOG00000012843)	Rd3l (ENSRNOG00000043031)	Tdrd9 (ENSRNOG00000053631)	ENSRNOG00000068254	Ppp1r13b (ENSRNOG00000012653)	Zfyve21 (ENSRNOG00000012185)	Xrcc3 (ENSRNOG00000012141)	Klc1 (ENSRNOG00000011572)	Coa8 (ENSRNOG00000011542)	Bag5 (ENSRNOG00000058841)	Trmt61a (ENSRNOG00000011398)	Ckb (ENSRNOG00000010872) ##22	Mark3 (ENSRNOG00000010330)	Eif5 (ENSRNOG00000010218)	Diras3 (ENSRNOG00000068695)	Tnfaip2 (ENSRNOG00000010165)	AABR07065589.1 (ENSRNOG00000053429)	Exoc3l4 (ENSRNOG00000010111)	Lbhd2 (ENSRNOG00000043137)	Cdc42bpb (ENSRNOG00000009675)	Amn (ENSRNOG00000009050)	Traf3 (ENSRNOG00000008145)	ENSRNOG00000062855	Rcor1 (ENSRNOG00000049783)	Ankrd9 (ENSRNOG00000008056)	Tecpr2 (ENSRNOG00000021904)	Cinp (ENSRNOG00000008035)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1886				Kif26a (ENSNGAG00000021429)	Aspg (ENSNGAG00000016677)	Tdrd9 (ENSNGAG00000021858)	Rd3l (ENSNGAG00000021769)	Atp5mpl (ENSNGAG00000021885)	ENSNGAG00000015662	Zfyve21 (ENSNGAG00000020752)	ENSNGAG00000022009	Klc1 (ENSNGAG00000022246)	Coa8 (ENSNGAG00000018482)	Bag5 (ENSNGAG00000020903)	Trmt61a (ENSNGAG00000021119)	Ckb (ENSNGAG00000002315) ##22	Mark3 (ENSNGAG00000010679)	Eif5 (ENSNGAG00000023359)	Tnfaip2 (ENSNGAG00000015194)	Exoc3l4 (ENSNGAG00000023525)	Lbhd2 (ENSNGAG00000021417)	Cdc42bpb (ENSNGAG00000003840)	Amn (ENSNGAG00000023699)	Traf3 (ENSNGAG00000011396)	Rcor1 (ENSNGAG00000011313)	Ankrd9 (ENSNGAG00000013700)	Tecpr2 (ENSNGAG00000021277)	Cinp (ENSNGAG00000022938)	Zfp839 (ENSNGAG00000023594)	Mok (ENSNGAG00000024041)	ENSNGAG00000014985
Lesser Egyptian jerboa	MODERN SPECIES	122	Adssl1 (ENSJJAG00000012984)	Inf2 (ENSJJAG00000023781)	Tmem179 (ENSJJAG00000021084)	A530016L24Rik (ENSJJAG00000020219)	Kif26a (ENSJJAG00000000781)	Aspg (ENSJJAG00000022213)	Tdrd9 (ENSJJAG00000022462)	ENSJJAG00000020211	ENSJJAG00000018703	Zfyve21 (ENSJJAG00000016650)	Xrcc3 (ENSJJAG00000013625)	Klc1 (ENSJJAG00000014112)	ENSJJAG00000003577	Bag5 (ENSJJAG00000000717)	Trmt61a (ENSJJAG00000000428)	Ckb (ENSJJAG00000022169) ##22	Mark3 (ENSJJAG00000022266)	Eif5 (ENSJJAG00000011403)	Otub2 (ENSJJAG00000018693)	Ddx24 (ENSJJAG00000010842)	Ppp4r4 (ENSJJAG00000021389)	Serpina10 (ENSJJAG00000015823)	Serpina6 (ENSJJAG00000014466)	ENSJJAG00000014013	ENSJJAG00000024304	Serpina11 (ENSJJAG00000010522)	Serpina12 (ENSJJAG00000009472)	Serpina5 (ENSJJAG00000020864)	ENSJJAG00000017595	Gsc (ENSJJAG00000014492)	Dicer1 (ENSJJAG00000010766)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Hystricomorpha	ANCESTRAL SPECIES	51	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Hystricomorpha_a	ANCESTRAL SPECIES	58	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a.p.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Hystricomorpha_b	ANCESTRAL SPECIES	92	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a.p.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Degu	DUPLICATION
Degu	MODERN SPECIES	267	AKT1 (ENSODEG00000002014)	ENSODEG00000002046	ADSS1 (ENSODEG00000002065)	INF2 (ENSODEG00000002088)	TMEM179 (ENSODEG00000002119)	KIF26A (ENSODEG00000002137)	ASPG (ENSODEG00000002164)	TDRD9 (ENSODEG00000002255)	ENSODEG00000002459	ENSODEG00000002481	ZFYVE21 (ENSODEG00000002496)	XRCC3 (ENSODEG00000002520)	KLC1 (ENSODEG00000002575)	COA8 (ENSODEG00000002642)	TRMT61A (ENSODEG00000001775)	ENSODEG00000001805 ##22	MARK3 (ENSODEG00000001890)	ENSODEG00000018808	ENSODEG00000002043	TNFAIP2 (ENSODEG00000002077)	EXOC3L4 (ENSODEG00000002116)	CDC42BPB (ENSODEG00000002217)	AMN (ENSODEG00000002431)	TRAF3 (ENSODEG00000002457)	RCOR1 (ENSODEG00000002491)	ANKRD9 (ENSODEG00000002556)	ENSODEG00000002569	CINP (ENSODEG00000002583)	ENSODEG00000002597	WDR20 (ENSODEG00000002622)	ENSODEG00000002636
Degu	MODERN SPECIES	45	SLC25A3 (ENSODEG00000009995)	ENSODEG00000010948	APAF1 (ENSODEG00000010122)	ENSODEG00000019813	ENSODEG00000010313	ENSODEG00000010573	ENSODEG00000010991	ENSODEG00000010669	ENSODEG00000011572	BLTP3B (ENSODEG00000010196)	ENSODEG00000010649	ENSODEG00000011114	SLC17A8 (ENSODEG00000010869)	NR1H4 (ENSODEG00000012027)	ENSODEG00000010407	ENSODEG00000009780 ##22	ANO4 (ENSODEG00000011009)	ENSODEG00000010202	SLC5A8 (ENSODEG00000010696)	UTP20 (ENSODEG00000013411)	ENSODEG00000010531	SPIC (ENSODEG00000010078)	ENSODEG00000010424	MYBPC1 (ENSODEG00000012077)	CHPT1 (ENSODEG00000011230)	SYCP3 (ENSODEG00000011961)	GNPTAB (ENSODEG00000012289)	DRAM1 (ENSODEG00000011613)	WASHC3 (ENSODEG00000010588)	NUP37 (ENSODEG00000011637)	PARPBP (ENSODEG00000012004)
Guinea pig	MODERN SPECIES	111	ADSS1 (ENSCPOG00000009566)	INF2 (ENSCPOG00000015219)	ENSCPOG00000039530	KIF26A (ENSCPOG00000019833)	ASPG (ENSCPOG00000026114)	RD3L (ENSCPOG00000036429)	TDRD9 (ENSCPOG00000002760)	ENSCPOG00000033733	PPP1R13B (ENSCPOG00000021000)	ZFYVE21 (ENSCPOG00000024426)	XRCC3 (ENSCPOG00000022422)	KLC1 (ENSCPOG00000026901)	COA8 (ENSCPOG00000013098)	BAG5 (ENSCPOG00000024833)	TRMT61A (ENSCPOG00000033200)	CKB (ENSCPOG00000032248) ##22	MARK3 (ENSCPOG00000013946)	EIF5 (ENSCPOG00000001236)	TNFAIP2 (ENSCPOG00000010932)	EXOC3L4 (ENSCPOG00000010016)	LBHD2 (ENSCPOG00000030081)	CDC42BPB (ENSCPOG00000003812)	AMN (ENSCPOG00000022870)	TRAF3 (ENSCPOG00000040090)	RCOR1 (ENSCPOG00000011410)	ANKRD9 (ENSCPOG00000010220)	TECPR2 (ENSCPOG00000000207)	CINP (ENSCPOG00000034861)	ENSCPOG00000021691	ENSCPOG00000035139	WDR20 (ENSCPOG00000002483)
Naked mole-rat female	MODERN SPECIES	18	ADSS1 (ENSHGLG00000010136)	ENSHGLG00000011755	TMEM179 (ENSHGLG00000047899)	KIF26A (ENSHGLG00000005481)	ASPG (ENSHGLG00000005952)	RD3L (ENSHGLG00000047639)	TDRD9 (ENSHGLG00000007727)	ENSHGLG00000036711	PPP1R13B (ENSHGLG00000006763)	ZFYVE21 (ENSHGLG00000011494)	XRCC3 (ENSHGLG00000011996)	KLC1 (ENSHGLG00000006287)	ENSHGLG00000011330	ENSHGLG00000050617	TRMT61A (ENSHGLG00000005604)	CKB (ENSHGLG00000005770) ##22	MARK3 (ENSHGLG00000007571)	EIF5 (ENSHGLG00000015043)	TNFAIP2 (ENSHGLG00000015741)	EXOC3L4 (ENSHGLG00000013564)	LBHD2 (ENSHGLG00000045160)	CDC42BPB (ENSHGLG00000018068)	AMN (ENSHGLG00000015524)	ENSHGLG00000036396	TRAF3 (ENSHGLG00000049736)	RCOR1 (ENSHGLG00000005778)	ENSHGLG00000008270	CINP (ENSHGLG00000045981)	ENSHGLG00000032701	ENSHGLG00000009939	ENSHGLG00000045892
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862.b	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005010617	ENSSVLG00005010660	KIF26A (ENSSVLG00005010683)	ASPG (ENSSVLG00005010927)	TDRD9 (ENSSVLG00005011123)	RD3L (ENSSVLG00005011833)	ENSSVLG00005011879	PPP1R13B (ENSSVLG00005011931)	ZFYVE21 (ENSSVLG00005012130)	ENSSVLG00005012176	KLC1 (ENSSVLG00005012331)	ENSSVLG00005012491	COA8 (ENSSVLG00005012532)	BAG5 (ENSSVLG00005012632)	TRMT61A (ENSSVLG00005012687)	ENSSVLG00005012740 ##22	ENSSVLG00005012973	EIF5 (ENSSVLG00005013171)	ENSSVLG00005013280	TNFAIP2 (ENSSVLG00005013312)	EXOC3L4 (ENSSVLG00005013432)	LBHD2 (ENSSVLG00005013492)	CDC42BPB (ENSSVLG00005013599)	AMN (ENSSVLG00005013683)	TRAF3 (ENSSVLG00005013900)	RCOR1 (ENSSVLG00005014032)	ANKRD9 (ENSSVLG00005014170)	TECPR2 (ENSSVLG00005014246)	CINP (ENSSVLG00005014319)	ZNF839 (ENSSVLG00005014407)	MOK (ENSSVLG00005014536)
Eurasian red squirrel	MODERN SPECIES	12	RHOT1 (ENSSVLG00005016781)	RHBDL3 (ENSSVLG00005016946)	C17orf75 (ENSSVLG00005017088)	ZNF207 (ENSSVLG00005017171)	ENSSVLG00005017498	CDK5R1 (ENSSVLG00005017534)	MYO1D (ENSSVLG00005017566)	ENSSVLG00005017677	TMEM98 (ENSSVLG00005017715)	ENSSVLG00005017765	ASIC2 (ENSSVLG00005017834)	ENSSVLG00005018047	ENSSVLG00005018082	ENSSVLG00005018128	ENSSVLG00005018180	ENSSVLG00005018242 ##22	ENSSVLG00005018284	ENSSVLG00005018440	ENSSVLG00005018536	ENSSVLG00005018675	ENSSVLG00005018739	PTPN18 (ENSSVLG00005018932)	ENSSVLG00005019214	ENSSVLG00005019266	GPR148 (ENSSVLG00005019335)	AMER3 (ENSSVLG00005019403)	ENSSVLG00005019688	FAM168B (ENSSVLG00005019958)	PLEKHB2 (ENSSVLG00005020018)	ENSSVLG00005020090	HS6ST1 (ENSSVLG00005020153)
Marmotini	ANCESTRAL SPECIES	27	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862.b	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Marmotini_b	ANCESTRAL SPECIES	99	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862.b	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Arctic ground squirrel	MODERN SPECIES	320	ENSUPAG00010018585	ENSUPAG00010018579	TMEM179 (ENSUPAG00010018572)	ENSUPAG00010018557	KIF26A (ENSUPAG00010018523)	ASPG (ENSUPAG00010018503)	RD3L (ENSUPAG00010018456)	TDRD9 (ENSUPAG00010018401)	ENSUPAG00010018391	PPP1R13B (ENSUPAG00010018373)	ZFYVE21 (ENSUPAG00010018360)	XRCC3 (ENSUPAG00010018352)	KLC1 (ENSUPAG00010018171)	BAG5 (ENSUPAG00010018162)	TRMT61A (ENSUPAG00010018157)	CKB (ENSUPAG00010018151) ##22	MARK3 (ENSUPAG00010017955)	ENSUPAG00010017935	ENSUPAG00010017927	TNFAIP2 (ENSUPAG00010017901)	EXOC3L4 (ENSUPAG00010017874)	ENSUPAG00010017871	CDC42BPB (ENSUPAG00010017808)	AMN (ENSUPAG00010017783)	TRAF3 (ENSUPAG00010017758)	RCOR1 (ENSUPAG00010017704)
Squirrel	MODERN SPECIES	221	INF2 (ENSSTOG00000022460)	TMEM179 (ENSSTOG00000022354)	KIF26A (ENSSTOG00000021225)	ASPG (ENSSTOG00000023161)	TDRD9 (ENSSTOG00000007890)	ENSSTOG00000002831	RD3L (ENSSTOG00000026241)	ATP5MJ (ENSSTOG00000007883)	PPP1R13B (ENSSTOG00000010345)	ZFYVE21 (ENSSTOG00000010336)	XRCC3 (ENSSTOG00000027100)	KLC1 (ENSSTOG00000014074)	COA8 (ENSSTOG00000019873)	BAG5 (ENSSTOG00000027571)	TRMT61A (ENSSTOG00000009792)	CKB (ENSSTOG00000023632) ##22	MARK3 (ENSSTOG00000009776)	EIF5 (ENSSTOG00000003683)	ENSSTOG00000022018	ENSSTOG00000028490	EXOC3L4 (ENSSTOG00000004186)	ENSSTOG00000026145	KRIT1 (ENSSTOG00000022767)	CYP51A1 (ENSSTOG00000006693)	AKAP9 (ENSSTOG00000006585)	MTERF1 (ENSSTOG00000001846)	FZD1 (ENSSTOG00000013482)	CDK14 (ENSSTOG00000013466)	PTTG1IP2 (ENSSTOG00000030927)	CLDN12 (ENSSTOG00000013464)	GTPBP10 (ENSSTOG00000008220)
Alpin marmot	MODERN SPECIES	1	ADSS1 (ENSMMMG00000005086)	ENSMMMG00000005003	ENSMMMG00000004995	KIF26A (ENSMMMG00000004945)	ASPG (ENSMMMG00000004917)	TDRD9 (ENSMMMG00000004862)	RD3L (ENSMMMG00000004838)	ENSMMMG00000004833	PPP1R13B (ENSMMMG00000004811)	ZFYVE21 (ENSMMMG00000004805)	XRCC3 (ENSMMMG00000004791)	KLC1 (ENSMMMG00000004526)	COA8 (ENSMMMG00000004518)	BAG5 (ENSMMMG00000004510)	TRMT61A (ENSMMMG00000004492)	CKB (ENSMMMG00000004465) ##22	MARK3 (ENSMMMG00000004239)	EIF5 (ENSMMMG00000004136)	ENSMMMG00000004126	TNFAIP2 (ENSMMMG00000004097)	EXOC3L4 (ENSMMMG00000004056)	LBHD2 (ENSMMMG00000004048)	ENSMMMG00000004030	CDC42BPB (ENSMMMG00000003965)	TRAF3 (ENSMMMG00000003876)	RCOR1 (ENSMMMG00000003851)	ANKRD9 (ENSMMMG00000003841)	TECPR2 (ENSMMMG00000003754)	CINP (ENSMMMG00000003712)	ENSMMMG00000003710	MOK (ENSMMMG00000003666)
Primates	ANCESTRAL SPECIES	2	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862	ENSGT00390000016478.i.b	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.b	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Tarsier	MODERN SPECIES	2310																ENSTSYG00000033930 ##22
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00510000048283.d	ENSGT00860000136327	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.b	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00860000136327	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000165819	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.k.a ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00390000016478.i.b	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	825	MIDEAS (ENSANAG00000029623)	PNMA1 (ENSANAG00000019370)	DNAL1 (ENSANAG00000030053)	ACOT6 (ENSANAG00000011051)	ACOT4 (ENSANAG00000020773)	ENSANAG00000025037	HEATR4 (ENSANAG00000026083)	RIOX1 (ENSANAG00000018079)	NUMB (ENSANAG00000031899)	PAPLN (ENSANAG00000021965)	PSEN1 (ENSANAG00000026358)	ENSANAG00000036030	ENSANAG00000005418	RBM25 (ENSANAG00000028295)	ENSANAG00000020412	ENSANAG00000020515 ##22	ENSANAG00000021022	ZFYVE1 (ENSANAG00000019269)	DCAF4 (ENSANAG00000033863)	DPF3 (ENSANAG00000024095)	ENSANAG00000035122	RGS6 (ENSANAG00000032870)	SIPA1L1 (ENSANAG00000038424)	ENSANAG00000030114	ENSANAG00000020317	PCNX1 (ENSANAG00000020800)	ENSANAG00000025022	MAP3K9 (ENSANAG00000001676)	TTC9 (ENSANAG00000022265)	MED6 (ENSANAG00000020299)	ENSANAG00000021730
Mas night monkey	MODERN SPECIES	831	TMEM179 (ENSANAG00000033576)	ENSANAG00000031898	C14orf180 (ENSANAG00000027878)	KIF26A (ENSANAG00000036661)	ASPG (ENSANAG00000025896)	TDRD9 (ENSANAG00000020949)	RD3L (ENSANAG00000026776)	ENSANAG00000019756	PPP1R13B (ENSANAG00000028500)	ZFYVE21 (ENSANAG00000027320)	XRCC3 (ENSANAG00000028646)	ENSANAG00000028747	COA8 (ENSANAG00000020280)	BAG5 (ENSANAG00000035539)	TRMT61A (ENSANAG00000020615)	ENSANAG00000028580 ##22	ENSANAG00000038119	MARK3 (ENSANAG00000022809)	ENSANAG00000037390	TNFAIP2 (ENSANAG00000021205)	EXOC3L4 (ENSANAG00000036047)	LBHD2 (ENSANAG00000015116)	CDC42BPB (ENSANAG00000026973)	AMN (ENSANAG00000026321)	TRAF3 (ENSANAG00000022729)	ENSANAG00000037392	RCOR1 (ENSANAG00000036522)	ANKRD9 (ENSANAG00000013963)	TECPR2 (ENSANAG00000035963)	ENSANAG00000029137	ZNF839 (ENSANAG00000032749)
Cebidae	ANCESTRAL SPECIES	3	ENSGT00510000048283.d	ENSGT00860000136327	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.k.a ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d.d
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00510000048283.d	ENSGT00860000136327	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000165819	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.k.a ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d.d
Bolivian squirrel monkey	MODERN SPECIES	98	TMEM179 (ENSSBOG00000033653)	C14orf180 (ENSSBOG00000020567)	KIF26A (ENSSBOG00000025778)	ASPG (ENSSBOG00000032975)	ENSSBOG00000020362	TDRD9 (ENSSBOG00000027466)	RD3L (ENSSBOG00000035782)	ENSSBOG00000006745	PPP1R13B (ENSSBOG00000030285)	ZFYVE21 (ENSSBOG00000026863)	XRCC3 (ENSSBOG00000028542)	KLC1 (ENSSBOG00000029112)	COA8 (ENSSBOG00000019622)	BAG5 (ENSSBOG00000001198)	TRMT61A (ENSSBOG00000022999)	ENSSBOG00000027968 ##22	MARK3 (ENSSBOG00000033976)	ENSSBOG00000034185	ENSSBOG00000024395	ENSSBOG00000025966	ENSSBOG00000029015	TNFAIP2 (ENSSBOG00000022024)	EXOC3L4 (ENSSBOG00000019447)	LBHD2 (ENSSBOG00000021611)	CDC42BPB (ENSSBOG00000027833)	AMN (ENSSBOG00000035221)	TRAF3 (ENSSBOG00000011271)	RCOR1 (ENSSBOG00000027987)	TECPR2 (ENSSBOG00000029184)	CINP (ENSSBOG00000014042)	ZNF839 (ENSSBOG00000011469)
Capuchin	MODERN SPECIES	338	ENSCCAG00000025725	ENSCCAG00000031711	KIF26A (ENSCCAG00000020022)	ASPG (ENSCCAG00000014047)	RD3L (ENSCCAG00000034127)	TDRD9 (ENSCCAG00000022528)	ENSCCAG00000012217	ENSCCAG00000035325	PPP1R13B (ENSCCAG00000033609)	ZFYVE21 (ENSCCAG00000027784)	XRCC3 (ENSCCAG00000038040)	KLC1 (ENSCCAG00000018360)	COA8 (ENSCCAG00000024599)	BAG5 (ENSCCAG00000030035)	TRMT61A (ENSCCAG00000021969)	CKB (ENSCCAG00000036759) ##22	MARK3 (ENSCCAG00000027915)	EIF5 (ENSCCAG00000018461)	ENSCCAG00000019593
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.k.b ##22
Mas night monkey	MODERN SPECIES	1336																ENSANAG00000000458 ##22	GCC2 (ENSANAG00000020924)	ENSANAG00000035997	SULT1C4 (ENSANAG00000020463)	SULT1C2 (ENSANAG00000017162)	SULT1C3 (ENSANAG00000003613)	ENSANAG00000024378	SLC5A7 (ENSANAG00000023945)	ST6GAL2 (ENSANAG00000025290)	ENSANAG00000027234	ENSANAG00000027260
Cebidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.k.b ##22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.k.b ##22
Bolivian squirrel monkey	MODERN SPECIES	94	KCTD17 (ENSSBOG00000030009)	MPST (ENSSBOG00000034388)	TST (ENSSBOG00000034621)	TEX33 (ENSSBOG00000034578)	CSF2RB (ENSSBOG00000021764)	NCF4 (ENSSBOG00000024948)	PVALB (ENSSBOG00000026884)	IFT27 (ENSSBOG00000016486)	CACNG2 (ENSSBOG00000033704)	EIF3D (ENSSBOG00000032811)	FOXRED2 (ENSSBOG00000033703)	TXN2 (ENSSBOG00000030716)	MYH9 (ENSSBOG00000030902)	APOL2 (ENSSBOG00000017347)	RBFOX2 (ENSSBOG00000028291)	ENSSBOG00000031659 ##22	ENSSBOG00000031135	MB (ENSSBOG00000021573)	RASD2 (ENSSBOG00000028390)	MCM5 (ENSSBOG00000035769)	HMOX1 (ENSSBOG00000000291)	TOM1 (ENSSBOG00000024056)	HMGXB4 (ENSSBOG00000028618)	ISX (ENSSBOG00000016181)	LARGE1 (ENSSBOG00000025240)	SYN3 (ENSSBOG00000022799)	TIMP3 (ENSSBOG00000020035)	FBXO7 (ENSSBOG00000034715)	ENSSBOG00000027198	ENSSBOG00000029780
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.l ##22
Cebidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.l ##22
Marmoset	MODERN SPECIES	1	INF2 (ENSCJAG00000009247)	ENSCJAG00000057715	TMEM179 (ENSCJAG00000069879)	ENSCJAG00000007904	KIF26A (ENSCJAG00000017272)	RD3L (ENSCJAG00000082473)	TDRD9 (ENSCJAG00000017235)	ATP5MJ (ENSCJAG00000044960)	PPP1R13B (ENSCJAG00000017204)	ZFYVE21 (ENSCJAG00000017190)	XRCC3 (ENSCJAG00000017182)	KLC1 (ENSCJAG00000017134)	COA8 (ENSCJAG00000044883)	BAG5 (ENSCJAG00000017123)	TRMT61A (ENSCJAG00000017117)	CKB (ENSCJAG00000012790) ##22	MARK3 (ENSCJAG00000038489)	ENSCJAG00000017104	ENSCJAG00000086072	TNFAIP2 (ENSCJAG00000017086)	EXOC3L4 (ENSCJAG00000017071)	LBHD2 (ENSCJAG00000048188)	CDC42BPB (ENSCJAG00000003298)	AMN (ENSCJAG00000003281)	TRAF3 (ENSCJAG00000009729)	RCOR1 (ENSCJAG00000009784)	ANKRD9 (ENSCJAG00000009811)	TECPR2 (ENSCJAG00000009815)	CINP (ENSCJAG00000009870)	ZNF839 (ENSCJAG00000009880)	MOK (ENSCJAG00000009899)
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Hominidae	ANCESTRAL SPECIES	14	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01090000263418	ENSGT00910000148592	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Gorilla	MODERN SPECIES	5	INF2 (ENSGGOG00000014158)	TMEM179 (ENSGGOG00000013426)	C14orf180 (ENSGGOG00000014934)	ENSGGOG00000010761	KIF26A (ENSGGOG00000015026)	ASPG (ENSGGOG00000003238)	RD3L (ENSGGOG00000038139)	TDRD9 (ENSGGOG00000000812)	PPP1R13B (ENSGGOG00000009600)	ZFYVE21 (ENSGGOG00000009593)	XRCC3 (ENSGGOG00000009589)	KLC1 (ENSGGOG00000009580)	COA8 (ENSGGOG00000043278)	BAG5 (ENSGGOG00000001790)	TRMT61A (ENSGGOG00000007401)	ENSGGOG00000007394 ##22	MARK3 (ENSGGOG00000007387)	ENSGGOG00000041315	ENSGGOG00000023407	EXOC3L4 (ENSGGOG00000016704)	LBHD2 (ENSGGOG00000044036)	CDC42BPB (ENSGGOG00000004285)	ENSGGOG00000004279	TRAF3 (ENSGGOG00000004273)	ENSGGOG00000041502	RCOR1 (ENSGGOG00000005323)	ENSGGOG00000037648	TECPR2 (ENSGGOG00000003523)	CINP (ENSGGOG00000006071)	ZNF839 (ENSGGOG00000006061)	MOK (ENSGGOG00000006052)
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01090000263418	ENSGT00910000148592	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Human	MODERN SPECIES	5	C14orf180 (ENSG00000184601)	TMEM179 (ENSG00000258986)	KIF26A (ENSG00000066735)	ASPG (ENSG00000166183)	RD3L (ENSG00000227729)	TDRD9 (ENSG00000156414)	ATP5MJ (ENSG00000156411)	PPP1R13B (ENSG00000088808)	ZFYVE21 (ENSG00000100711)	XRCC3 (ENSG00000126215)	ENSG00000256500	COA8 (ENSG00000256053)	KLC1 (ENSG00000126214)	BAG5 (ENSG00000166170)	TRMT61A (ENSG00000166166)	CKB (ENSG00000166165) ##22	MARK3 (ENSG00000075413)	ENSG00000291313	EIF5 (ENSG00000100664)	TNFAIP2 (ENSG00000185215)	EXOC3L4 (ENSG00000205436)	LBHD2 (ENSG00000283071)	CDC42BPB (ENSG00000198752)	AMN (ENSG00000166126)	TRAF3 (ENSG00000131323)	RCOR1 (ENSG00000089902)	ANKRD9 (ENSG00000156381)	TECPR2 (ENSG00000196663)	CINP (ENSG00000100865)	ZNF839 (ENSG00000022976)	MOK (ENSG00000080823)
Pan	ANCESTRAL SPECIES	8	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00910000148592	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Chimpanzee	MODERN SPECIES	5	ENSPTRG00000049533	C14H14orf180 (ENSPTRG00000006769)	ENSPTRG00000048997	KIF26A (ENSPTRG00000033926)	ASPG (ENSPTRG00000006766)	RD3L (ENSPTRG00000047159)	TDRD9 (ENSPTRG00000006765)	ATP5MJ (ENSPTRG00000006764)	PPP1R13B (ENSPTRG00000006763)	ZFYVE21 (ENSPTRG00000006762)	XRCC3 (ENSPTRG00000006761)	KLC1 (ENSPTRG00000006760)	COA8 (ENSPTRG00000043726)	BAG5 (ENSPTRG00000006758)	TRMT61A (ENSPTRG00000006757)	CKB (ENSPTRG00000006756) ##22	MARK3 (ENSPTRG00000006754)	EIF5 (ENSPTRG00000006753)	ENSPTRG00000050082	TNFAIP2 (ENSPTRG00000006749)	EXOC3L4 (ENSPTRG00000030661)	LBHD2 (ENSPTRG00000051370)	CDC42BPB (ENSPTRG00000006748)	AMN (ENSPTRG00000006747)	TRAF3 (ENSPTRG00000006746)	RCOR1 (ENSPTRG00000006744)	ANKRD9 (ENSPTRG00000006743)	TECPR2 (ENSPTRG00000024401)	CINP (ENSPTRG00000006741)	ZNF839 (ENSPTRG00000006740)	MOK (ENSPTRG00000006738)
Bonobo	MODERN SPECIES	5	TMEM179 (ENSPPAG00000039000)	C14orf180 (ENSPPAG00000041150)	ENSPPAG00000032971	KIF26A (ENSPPAG00000037737)	ASPG (ENSPPAG00000000731)	TDRD9 (ENSPPAG00000027180)	RD3L (ENSPPAG00000025116)	ENSPPAG00000034328	PPP1R13B (ENSPPAG00000043472)	ENSPPAG00000039040	XRCC3 (ENSPPAG00000038589)	KLC1 (ENSPPAG00000036216)	COA8 (ENSPPAG00000021372)	BAG5 (ENSPPAG00000018351)	TRMT61A (ENSPPAG00000027799)	ENSPPAG00000019639 ##22	MARK3 (ENSPPAG00000030786)	EIF5 (ENSPPAG00000039883)	ENSPPAG00000014698	TNFAIP2 (ENSPPAG00000027880)	EXOC3L4 (ENSPPAG00000026559)	LBHD2 (ENSPPAG00000017372)	CDC42BPB (ENSPPAG00000043371)	AMN (ENSPPAG00000033035)	TRAF3 (ENSPPAG00000028105)	ENSPPAG00000006421	TECPR2 (ENSPPAG00000036325)	CINP (ENSPPAG00000025476)	ZNF839 (ENSPPAG00000027810)	MOK (ENSPPAG00000029403)	WDR20 (ENSPPAG00000037285)
Orangutan	MODERN SPECIES	5	ENSPPYG00000006186	ENSPPYG00000006185	ENSPPYG00000039613	KIF26A (ENSPPYG00000006182)	ASPG (ENSPPYG00000006181)	RD3L (ENSPPYG00000041192)	TDRD9 (ENSPPYG00000006180)	ENSPPYG00000041171	PPP1R13B (ENSPPYG00000006179)	ZFYVE21 (ENSPPYG00000006178)	XRCC3 (ENSPPYG00000006177)	KLC1 (ENSPPYG00000006175)	ENSPPYG00000006174	ENSPPYG00000041007	TRMT61A (ENSPPYG00000006172)	CKB (ENSPPYG00000006171) ##22	MARK3 (ENSPPYG00000006170)	EIF5 (ENSPPYG00000006169)	TNFAIP2 (ENSPPYG00000006166)	EXOC3L4 (ENSPPYG00000006165)	CDC42BPB (ENSPPYG00000006164)	AMN (ENSPPYG00000006163)	TRAF3 (ENSPPYG00000006162)	RCOR1 (ENSPPYG00000006161)	ANKRD9 (ENSPPYG00000006160)	TECPR2 (ENSPPYG00000006159)	CINP (ENSPPYG00000006158)	ZNF839 (ENSPPYG00000006157)	MOK (ENSPPYG00000006155)	WDR20 (ENSPPYG00000006154)	HSP90AA1 (ENSPPYG00000006153)
Gibbon	MODERN SPECIES	14	TMEM179 (ENSNLEG00000016307)	ENSNLEG00000016306	ENSNLEG00000016298	KIF26A (ENSNLEG00000016290)	ASPG (ENSNLEG00000016278)	TDRD9 (ENSNLEG00000016251)	RD3L (ENSNLEG00000029602)	ENSNLEG00000016248	PPP1R13B (ENSNLEG00000016238)	ZFYVE21 (ENSNLEG00000033101)	XRCC3 (ENSNLEG00000016212)	KLC1 (ENSNLEG00000016208)	COA8 (ENSNLEG00000028956)	BAG5 (ENSNLEG00000016206)	ENSNLEG00000016202	CKB (ENSNLEG00000016174) ##22	MARK3 (ENSNLEG00000016129)	EIF5 (ENSNLEG00000027211)	ENSNLEG00000016091	ENSNLEG00000016089	ENSNLEG00000028415	CDC42BPB (ENSNLEG00000016074)	TRAF3 (ENSNLEG00000016049)	RCOR1 (ENSNLEG00000029157)	ENSNLEG00000035545	TECPR2 (ENSNLEG00000016024)	CINP (ENSNLEG00000016009)	ZNF839 (ENSNLEG00000015996)	MOK (ENSNLEG00000015986)	WDR20 (ENSNLEG00000015977)	HSP90AA1 (ENSNLEG00000015925)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Rhinopithecus	ANCESTRAL SPECIES	8	ENSGT00910000147394	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.ib	ENSGT00390000016760.jb.a	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00720000108839.b	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Golden snub-nosed monkey	MODERN SPECIES	2871									PPP1R13B (ENSRROG00000042853)	ZFYVE21 (ENSRROG00000034527)	XRCC3 (ENSRROG00000035019)	KLC1 (ENSRROG00000034856)	COA8 (ENSRROG00000042485)	BAG5 (ENSRROG00000042247)	TRMT61A (ENSRROG00000042448)	ENSRROG00000039088 ##22	MARK3 (ENSRROG00000034327)	ENSRROG00000043289	EIF5 (ENSRROG00000037169)	ENSRROG00000027605	TNFAIP2 (ENSRROG00000039057)	EXOC3L4 (ENSRROG00000040920)	LBHD2 (ENSRROG00000034363)	CDC42BPB (ENSRROG00000034604)	TRAF3 (ENSRROG00000045084)	RCOR1 (ENSRROG00000033826)	ENSRROG00000019641	TECPR2 (ENSRROG00000042303)	CINP (ENSRROG00000045478)	ZNF839 (ENSRROG00000039783)	MOK (ENSRROG00000045030)
Black snub-nosed monkey	MODERN SPECIES	1533													ENSRBIG00000039874	BAG5 (ENSRBIG00000041428)	TRMT61A (ENSRBIG00000042669)	ENSRBIG00000044871 ##22	MARK3 (ENSRBIG00000044239)	ENSRBIG00000038446	ENSRBIG00000021907	TNFAIP2 (ENSRBIG00000008664)	EXOC3L4 (ENSRBIG00000033350)	LBHD2 (ENSRBIG00000007850)	CDC42BPB (ENSRBIG00000028315)	AMN (ENSRBIG00000036374)	TRAF3 (ENSRBIG00000044448)	RCOR1 (ENSRBIG00000038321)	ENSRBIG00000006177	TECPR2 (ENSRBIG00000031794)	CINP (ENSRBIG00000019672)	ZNF839 (ENSRBIG00000040573)	ENSRBIG00000031609
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00860000136327	ENSGT00390000001214	ENSGT00390000012831.b	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Vervet Monkey	MODERN SPECIES	188																ENSCSAG00000017901 ##22
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00510000048283.d	ENSGT00860000136327	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Macaca	ANCESTRAL SPECIES	1	ENSGT00510000048283.d	ENSGT00860000136327	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.b.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.b.a.b	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.a.b.b.b.a.b.a.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Rhesus	MODERN SPECIES	17	TMEM179 (ENSMMUG00000029177)	C7H14orf180 (ENSMMUG00000050660)	ENSMMUG00000063241	KIF26A (ENSMMUG00000009477)	ASPG (ENSMMUG00000014295)	ENSMMUG00000055793	RD3L (ENSMMUG00000001698)	TDRD9 (ENSMMUG00000006243)	ATP5MJ (ENSMMUG00000004915)	PPP1R13B (ENSMMUG00000018123)	ZFYVE21 (ENSMMUG00000018121)	XRCC3 (ENSMMUG00000029181)	KLC1 (ENSMMUG00000006803)	BAG5 (ENSMMUG00000017005)	TRMT61A (ENSMMUG00000007673)	CKB (ENSMMUG00000049145) ##22	ENSMMUG00000051448	MARK3 (ENSMMUG00000003641)	EIF5 (ENSMMUG00000005630)	ENSMMUG00000061910	ENSMMUG00000051640	TNFAIP2 (ENSMMUG00000021634)	EXOC3L4 (ENSMMUG00000029186)	LBHD2 (ENSMMUG00000048661)	CDC42BPB (ENSMMUG00000008380)	AMN (ENSMMUG00000039505)	ENSMMUG00000011751	TRAF3 (ENSMMUG00000011752)	ENSMMUG00000019552	RCOR1 (ENSMMUG00000005845)	ENSMMUG00000055215
Pig-tailed macaque	MODERN SPECIES	160	ENSMNEG00000044790	TMEM179 (ENSMNEG00000000690)	C14orf180 (ENSMNEG00000044931)	KIF26A (ENSMNEG00000037576)	ASPG (ENSMNEG00000043858)	RD3L (ENSMNEG00000037706)	TDRD9 (ENSMNEG00000044098)	ENSMNEG00000041294	PPP1R13B (ENSMNEG00000044596)	ZFYVE21 (ENSMNEG00000034393)	XRCC3 (ENSMNEG00000028725)	KLC1 (ENSMNEG00000028461)	COA8 (ENSMNEG00000043157)	BAG5 (ENSMNEG00000040925)	TRMT61A (ENSMNEG00000036125)	CKB (ENSMNEG00000038352) ##22	MARK3 (ENSMNEG00000029707)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000165819	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Olive baboon	MODERN SPECIES	17	ENSPANG00000010776	TMEM179 (ENSPANG00000016733)	C14orf180 (ENSPANG00000037690)	KIF26A (ENSPANG00000000883)	ASPG (ENSPANG00000000882)	TDRD9 (ENSPANG00000004811)	RD3L (ENSPANG00000017601)	ENSPANG00000031228	PPP1R13B (ENSPANG00000016275)	ZFYVE21 (ENSPANG00000016273)	XRCC3 (ENSPANG00000015712)	KLC1 (ENSPANG00000012335)	COA8 (ENSPANG00000004813)	BAG5 (ENSPANG00000017498)	TRMT61A (ENSPANG00000007028)	CKB (ENSPANG00000006942) ##22	MARK3 (ENSPANG00000000644)	EIF5 (ENSPANG00000004814)	TNFAIP2 (ENSPANG00000016599)	EXOC3L4 (ENSPANG00000021764)	LBHD2 (ENSPANG00000029706)	CDC42BPB (ENSPANG00000025197)	AMN (ENSPANG00000016601)	TRAF3 (ENSPANG00000018050)	RCOR1 (ENSPANG00000018049)	TECPR2 (ENSPANG00000018047)	CINP (ENSPANG00000033670)	ZNF839 (ENSPANG00000025531)	MOK (ENSPANG00000017500)	WDR20 (ENSPANG00000012337)	HSP90AA1 (ENSPANG00000021967)
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000165819	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00910000147412	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Drill	MODERN SPECIES	1071									PPP1R13B (ENSMLEG00000034583)	ZFYVE21 (ENSMLEG00000037745)	XRCC3 (ENSMLEG00000043504)	KLC1 (ENSMLEG00000033740)	COA8 (ENSMLEG00000041876)	BAG5 (ENSMLEG00000033188)	TRMT61A (ENSMLEG00000027585)	ENSMLEG00000033501 ##22	ENSMLEG00000035313	MARK3 (ENSMLEG00000038559)	EIF5 (ENSMLEG00000035191)	TNFAIP2 (ENSMLEG00000044100)	EXOC3L4 (ENSMLEG00000042355)	LBHD2 (ENSMLEG00000002402)	CDC42BPB (ENSMLEG00000036361)	AMN (ENSMLEG00000043700)	TRAF3 (ENSMLEG00000032977)	RCOR1 (ENSMLEG00000031095)	ENSMLEG00000039221	TECPR2 (ENSMLEG00000030025)	CINP (ENSMLEG00000037611)	ZNF839 (ENSMLEG00000028083)	MOK (ENSMLEG00000042545)
Sooty mangabey	MODERN SPECIES	249	ENSCATG00000040734	ENSCATG00000020497	C14orf180 (ENSCATG00000027034)	KIF26A (ENSCATG00000035120)	ASPG (ENSCATG00000038024)	RD3L (ENSCATG00000030191)	TDRD9 (ENSCATG00000032905)	ENSCATG00000040699	PPP1R13B (ENSCATG00000043796)	ZFYVE21 (ENSCATG00000030160)	XRCC3 (ENSCATG00000043378)	KLC1 (ENSCATG00000031713)	COA8 (ENSCATG00000036924)	BAG5 (ENSCATG00000034339)	TRMT61A (ENSCATG00000000028)	CKB (ENSCATG00000044021) ##22	MARK3 (ENSCATG00000042055)	EIF5 (ENSCATG00000044001)	TNFAIP2 (ENSCATG00000019272)	EXOC3L4 (ENSCATG00000043501)	LBHD2 (ENSCATG00000044011)	CDC42BPB (ENSCATG00000017326)	AMN (ENSCATG00000040408)	TRAF3 (ENSCATG00000018109)	ENSCATG00000029606	RCOR1 (ENSCATG00000029458)	ANKRD9 (ENSCATG00000019355)	TECPR2 (ENSCATG00000030527)	CINP (ENSCATG00000035509)	ZNF839 (ENSCATG00000038367)	MOK (ENSCATG00000026368)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862.j.b	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Lemuriformes	ANCESTRAL SPECIES	40	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862.j.b	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Lemuriformes_a	ANCESTRAL SPECIES	37	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01100000266056	ENSGT00940000154862.j.b	ENSGT00390000016478.i.a	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Coquerels sifaka	MODERN SPECIES	365	ADSS1 (ENSPCOG00000000641)	INF2 (ENSPCOG00000009607)	TMEM179 (ENSPCOG00000021398)	C14orf180 (ENSPCOG00000021157)	KIF26A (ENSPCOG00000024515)	ASPG (ENSPCOG00000011247)	TDRD9 (ENSPCOG00000015323)	RD3L (ENSPCOG00000017543)	PPP1R13B (ENSPCOG00000013777)	ZFYVE21 (ENSPCOG00000013598)	XRCC3 (ENSPCOG00000012925)	KLC1 (ENSPCOG00000013111)	COA8 (ENSPCOG00000023191)	BAG5 (ENSPCOG00000025264)	TRMT61A (ENSPCOG00000028487)	CKB (ENSPCOG00000014151) ##22	MARK3 (ENSPCOG00000023823)	EIF5 (ENSPCOG00000018505)	TNFAIP2 (ENSPCOG00000024298)	EXOC3L4 (ENSPCOG00000019423)	LBHD2 (ENSPCOG00000014760)	CDC42BPB (ENSPCOG00000025121)	AMN (ENSPCOG00000016828)	TRAF3 (ENSPCOG00000014996)	RCOR1 (ENSPCOG00000020275)	TECPR2 (ENSPCOG00000020207)	ZNF839 (ENSPCOG00000021768)	ENSPCOG00000005396	MOK (ENSPCOG00000015214)	WDR20 (ENSPCOG00000027238)	ENSPCOG00000028160
Greater bamboo lemur	MODERN SPECIES	754									PPP1R13B (ENSPSMG00000008404)	ZFYVE21 (ENSPSMG00000008479)	XRCC3 (ENSPSMG00000008503)	KLC1 (ENSPSMG00000008791)	COA8 (ENSPSMG00000008856)	BAG5 (ENSPSMG00000008861)	TRMT61A (ENSPSMG00000008869)	CKB (ENSPSMG00000008887) ##22	ENSPSMG00000008893	ENSPSMG00000008895	ENSPSMG00000008906
Mouse lemur	MODERN SPECIES	22	INF2 (ENSMICG00000034871)	TMEM179 (ENSMICG00000029522)	ENSMICG00000042488	KIF26A (ENSMICG00000028277)	ASPG (ENSMICG00000013859)	RD3L (ENSMICG00000043039)	TDRD9 (ENSMICG00000000428)	ATP5MJ (ENSMICG00000047123)	PPP1R13B (ENSMICG00000014947)	ZFYVE21 (ENSMICG00000014930)	XRCC3 (ENSMICG00000014917)	KLC1 (ENSMICG00000014896)	ENSMICG00000029228	COA8 (ENSMICG00000042844)	TRMT61A (ENSMICG00000047207)	CKB (ENSMICG00000009774) ##22	MARK3 (ENSMICG00000009748)	ENSMICG00000037601	EIF5 (ENSMICG00000010046)	ENSMICG00000037528	TNFAIP2 (ENSMICG00000009107)	EXOC3L4 (ENSMICG00000009101)	LBHD2 (ENSMICG00000032097)	CDC42BPB (ENSMICG00000013226)	AMN (ENSMICG00000027178)	TRAF3 (ENSMICG00000011793)	RCOR1 (ENSMICG00000000496)	TECPR2 (ENSMICG00000006623)	CINP (ENSMICG00000006619)	ZNF839 (ENSMICG00000006615)	MOK (ENSMICG00000004537)
Bushbaby	MODERN SPECIES	169				KIF26A (ENSOGAG00000032573)	ASPG (ENSOGAG00000024653)	TDRD9 (ENSOGAG00000007626)	RD3L (ENSOGAG00000027245)	ENSOGAG00000033456	PPP1R13B (ENSOGAG00000015434)	ZFYVE21 (ENSOGAG00000015430)	XRCC3 (ENSOGAG00000015428)	KLC1 (ENSOGAG00000015420)	COA8 (ENSOGAG00000015416)	BAG5 (ENSOGAG00000031671)	TRMT61A (ENSOGAG00000027762)	CKB (ENSOGAG00000026224) ##22	ENSOGAG00000027526	LGALS3 (ENSOGAG00000003473)	MAPK1IP1L (ENSOGAG00000003471)	SOCS4 (ENSOGAG00000003470)	WDHD1 (ENSOGAG00000003465)	GCH1 (ENSOGAG00000006341)	SAMD4A (ENSOGAG00000009678)	CGRRF1 (ENSOGAG00000009674)	GMFB (ENSOGAG00000009669)	CNIH1 (ENSOGAG00000024582)	CDKN3 (ENSOGAG00000009667)	BMP4 (ENSOGAG00000031354)	ENSOGAG00000025273	ENSOGAG00000017230	FERMT2 (ENSOGAG00000010017)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000018085.a.a.a.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Equus	ANCESTRAL SPECIES	17	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000018085.a.a.a.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT01050000244818.t.g.b.a	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Donkey	MODERN SPECIES	27	ENSEASG00005038486	KIF26A (ENSEASG00005004267)	ASPG (ENSEASG00005004249)	ENSEASG00005007833	RD3L (ENSEASG00005034783)	TDRD9 (ENSEASG00005004203)	ATP5MJ (ENSEASG00005032475)	PPP1R13B (ENSEASG00005004182)	ZFYVE21 (ENSEASG00005004176)	XRCC3 (ENSEASG00005004170)	KLC1 (ENSEASG00005004151)	COA8 (ENSEASG00005038668)	BAG5 (ENSEASG00005026372)	ENSEASG00005004131	TRMT61A (ENSEASG00005004127)	CKB (ENSEASG00005013821) ##22	MARK3 (ENSEASG00005004106)	ENSEASG00005004096	EIF5 (ENSEASG00005004086)	ENSEASG00005004073	TNFAIP2 (ENSEASG00005004057)	EXOC3L4 (ENSEASG00005004047)	LBHD2 (ENSEASG00005004041)	CDC42BPB (ENSEASG00005004017)	AMN (ENSEASG00005004014)	TRAF3 (ENSEASG00005004011)	RCOR1 (ENSEASG00005003999)	ENSEASG00005036749	ENSEASG00005029668	CINP (ENSEASG00005003976)	ZNF839 (ENSEASG00005037124)
Horse	MODERN SPECIES	16	C24H14orf180 (ENSECAG00000004388)	KIF26A (ENSECAG00000018772)	ASPG (ENSECAG00000013195)	ENSECAG00000050675	RD3L (ENSECAG00000036061)	TDRD9 (ENSECAG00000023843)	ATP5MJ (ENSECAG00000049034)	PPP1R13B (ENSECAG00000017405)	ZFYVE21 (ENSECAG00000016309)	XRCC3 (ENSECAG00000009189)	KLC1 (ENSECAG00000014904)	COA8 (ENSECAG00000013355)	ENSECAG00000029582	BAG5 (ENSECAG00000006244)	TRMT61A (ENSECAG00000012599)	CKB (ENSECAG00000009054) ##22	MARK3 (ENSECAG00000016955)	ENSECAG00000034523	EIF5 (ENSECAG00000012597)	ENSECAG00000037072	TNFAIP2 (ENSECAG00000011704)	EXOC3L4 (ENSECAG00000009801)	ENSECAG00000039552	CDC42BPB (ENSECAG00000021040)	AMN (ENSECAG00000026806)	TRAF3 (ENSECAG00000037175)	ENSECAG00000045340	RCOR1 (ENSECAG00000012168)	ENSECAG00000006098	TECPR2 (ENSECAG00000021106)	CINP (ENSECAG00000019092)
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000165819	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Megabat	MODERN SPECIES	2864																CKB (ENSPVAG00000001216) ##22	MARK3 (ENSPVAG00000001215)
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000165819	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Microbat	MODERN SPECIES	1713															PPP1R13B (ENSMLUG00000008333)	ENSMLUG00000029605 ##22	MARK3 (ENSMLUG00000015922)	EIF5 (ENSMLUG00000000882)
Greater horseshoe bat	MODERN SPECIES	24	INF2 (ENSRFEG00010001988)	TMEM179 (ENSRFEG00010002066)	ENSRFEG00010002091	KIF26A (ENSRFEG00010002187)	ASPG (ENSRFEG00010002245)	TDRD9 (ENSRFEG00010002295)	ENSRFEG00010002350	ENSRFEG00010002374	PPP1R13B (ENSRFEG00010002487)	ZFYVE21 (ENSRFEG00010002643)	XRCC3 (ENSRFEG00010002686)	KLC1 (ENSRFEG00010002772)	COA8 (ENSRFEG00010002871)	ENSRFEG00010002907	TRMT61A (ENSRFEG00010002919)	CKB (ENSRFEG00010002936) ##22	MARK3 (ENSRFEG00010003085)	EIF5 (ENSRFEG00010003270)	ENSRFEG00010003301	TNFAIP2 (ENSRFEG00010003320)	EXOC3L4 (ENSRFEG00010003373)	LBHD2 (ENSRFEG00010003420)	CDC42BPB (ENSRFEG00010003452)	AMN (ENSRFEG00010003508)	TRAF3 (ENSRFEG00010003548)	RCOR1 (ENSRFEG00010003600)	ENSRFEG00010003629	ANKRD9 (ENSRFEG00010003651)	TECPR2 (ENSRFEG00010003672)	CINP (ENSRFEG00010003704)	ZNF839 (ENSRFEG00010003743)
Carnivora	ANCESTRAL SPECIES		ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00390000016760.c.a.a.a	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Caniformia	ANCESTRAL SPECIES	15	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.m ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.m ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00900000143542	ENSGT00950000182772.A.a.b.n.a ##22	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Dingo	MODERN SPECIES	161	ENSCAFG00020008266	ENSCAFG00020008299	TMEM179 (ENSCAFG00020008514)	ENSCAFG00020008518	KIF26A (ENSCAFG00020008539)	ASPG (ENSCAFG00020008565)	TDRD9 (ENSCAFG00020008631)	RD3L (ENSCAFG00020008680)	ATP5MJ (ENSCAFG00020008682)	PPP1R13B (ENSCAFG00020008687)	ZFYVE21 (ENSCAFG00020008695)	XRCC3 (ENSCAFG00020008703)	COA8 (ENSCAFG00020008714)	BAG5 (ENSCAFG00020008719)	TRMT61A (ENSCAFG00020008720)	ENSCAFG00020008724 ##22	MARK3 (ENSCAFG00020008747)	EIF5 (ENSCAFG00020008755)	ENSCAFG00020008767	TNFAIP2 (ENSCAFG00020008776)	EXOC3L4 (ENSCAFG00020008816)	ENSCAFG00020008844	ENSCAFG00020008868	CDC42BPB (ENSCAFG00020008877)	AMN (ENSCAFG00020008904)	TRAF3 (ENSCAFG00020008921)	RCOR1 (ENSCAFG00020008964)	ANKRD9 (ENSCAFG00020009068)	TECPR2 (ENSCAFG00020009071)	CINP (ENSCAFG00020009073)	ZNF839 (ENSCAFG00020009076)
Dog	MODERN SPECIES	36	ADSSL1 (ENSCAFG00845021664)	TMEM179 (ENSCAFG00845021480)	C8H14orf180 (ENSCAFG00845021444)	KIF26A (ENSCAFG00845021077)	ENSCAFG00845020802	RD3L (ENSCAFG00845020748)	TDRD9 (ENSCAFG00845020420)	ATP5MJ (ENSCAFG00845020355)	PPP1R13B (ENSCAFG00845020095)	ZFYVE21 (ENSCAFG00845019992)	XRCC3 (ENSCAFG00845019939)	KLC1 (ENSCAFG00845019294)	COA8 (ENSCAFG00845019102)	BAG5 (ENSCAFG00845019070)	TRMT61A (ENSCAFG00845019044)	ENSCAFG00845018958 ##22	MARK3 (ENSCAFG00845018426)	EIF5 (ENSCAFG00845018209)	ENSCAFG00845017991	TNFAIP2 (ENSCAFG00845017908)	EXOC3L4 (ENSCAFG00845017731)	ENSCAFG00845017673	ENSCAFG00845017642 ##22	CDC42BPB (ENSCAFG00845017189)	AMN (ENSCAFG00845017022)	TRAF3 (ENSCAFG00845016806)	RCOR1 (ENSCAFG00845016544)	ANKRD9 (ENSCAFG00845016509)	TECPR2 (ENSCAFG00845016041)	CINP (ENSCAFG00845015873)	ZNF839 (ENSCAFG00845005744)
Red fox	MODERN SPECIES	93	INF2 (ENSVVUG00000002759)	TMEM179 (ENSVVUG00000002741)	ENSVVUG00000002734	KIF26A (ENSVVUG00000002653)	ASPG (ENSVVUG00000002615)	TDRD9 (ENSVVUG00000002584)	RD3L (ENSVVUG00000002573)	PPP1R13B (ENSVVUG00000001129)	ZFYVE21 (ENSVVUG00000001046)	XRCC3 (ENSVVUG00000000935)	ENSVVUG00000000890	KLC1 (ENSVVUG00000000793)	COA8 (ENSVVUG00000000768)	BAG5 (ENSVVUG00000000764)	TRMT61A (ENSVVUG00000000754)	CKB (ENSVVUG00000000586) ##22	MARK3 (ENSVVUG00000000529)	EIF5 (ENSVVUG00000000498)	ENSVVUG00000000435	TNFAIP2 (ENSVVUG00000000417)	EXOC3L4 (ENSVVUG00000000278)	LBHD2 (ENSVVUG00000000262)	CDC42BPB (ENSVVUG00000000207)	TRAF3 (ENSVVUG00000000150)	RCOR1 (ENSVVUG00000028847)	TECPR2 (ENSVVUG00000028842)	CINP (ENSVVUG00000028840)	MOK (ENSVVUG00000028839)	WDR20 (ENSVVUG00000028838)	HSP90AA1 (ENSVVUG00000028646)	ENSVVUG00000028638
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.n.a ##22
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000154482.b.b.a	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000156103	ENSGT00520000057711	ENSGT01020000230401.a.a.b.b.t.b.h	ENSGT00390000007686.b.d	ENSGT00940000159582	ENSGT00390000002751	ENSGT00390000015784	ENSGT00940000157283	ENSGT00390000018116	ENSGT00940000155654	ENSGT00940000160538	ENSGT00390000007463	ENSGT01030000234517.H.a	ENSGT00950000182772.A.a.b.n.a ##22	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a	ENSGT00940000164852	ENSGT00390000016478.i.a	ENSGT00940000154862	ENSGT00950000182772.A.a.b.m ##22	ENSGT00940000154239.a	ENSGT00940000158888	ENSGT00390000008212	ENSGT00940000155555	ENSGT00930000151053	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000016760.c.b
Dog	DUPLICATION
Dog	MODERN SPECIES	36	ENSCAFG00845004471	RTL1 (ENSCAFG00845004485)	PPP2R5C (ENSCAFG00845005387)	DYNC1H1 (ENSCAFG00845005454)	HSP90AA1 (ENSCAFG00845005495)	WDR20 (ENSCAFG00845005541)	MOK (ENSCAFG00845005653)	ZNF839 (ENSCAFG00845005744)	CINP (ENSCAFG00845015873)	TECPR2 (ENSCAFG00845016041)	ANKRD9 (ENSCAFG00845016509)	RCOR1 (ENSCAFG00845016544)	TRAF3 (ENSCAFG00845016806)	AMN (ENSCAFG00845017022)	CDC42BPB (ENSCAFG00845017189)	ENSCAFG00845017642 ##22	ENSCAFG00845017673	EXOC3L4 (ENSCAFG00845017731)	TNFAIP2 (ENSCAFG00845017908)	ENSCAFG00845017991	EIF5 (ENSCAFG00845018209)	MARK3 (ENSCAFG00845018426)	ENSCAFG00845018958 ##22	TRMT61A (ENSCAFG00845019044)	BAG5 (ENSCAFG00845019070)	COA8 (ENSCAFG00845019102)	KLC1 (ENSCAFG00845019294)	XRCC3 (ENSCAFG00845019939)	ZFYVE21 (ENSCAFG00845019992)	PPP1R13B (ENSCAFG00845020095)	ATP5MJ (ENSCAFG00845020355)
Dog	MODERN SPECIES	6	SPIC (ENSCAFG00845007650)	MYBPC1 (ENSCAFG00845007866)	CHPT1 (ENSCAFG00845008274)	GNPTAB (ENSCAFG00845008537)	DRAM1 (ENSCAFG00845008892)	ENSCAFG00845008937	WASHC3 (ENSCAFG00845008957)	NUP37 (ENSCAFG00845008993)	PARPBP (ENSCAFG00845009146)	PMCH (ENSCAFG00845009246)	IGF1 (ENSCAFG00845009366)	PAH (ENSCAFG00845009553)	ASCL1 (ENSCAFG00845009710)	STAB2 (ENSCAFG00845009872)	NT5DC3 (ENSCAFG00845010184)	ENSCAFG00845010352 ##22	HSP90B1 (ENSCAFG00845010421)	UQCC6 (ENSCAFG00845010622)	TDG (ENSCAFG00845010683)	GLT8D2 (ENSCAFG00845010772)	HCFC2 (ENSCAFG00845010878)	NFYB (ENSCAFG00845011102)	SMARCA5 (ENSCAFG00845011175)	ENSCAFG00845011402	GYPA (ENSCAFG00845011416)	HHIP (ENSCAFG00845011571)	ANAPC10 (ENSCAFG00845011688)	ABCE1 (ENSCAFG00845011788)	OTUD4 (ENSCAFG00845011956)	SMAD1 (ENSCAFG00845012104)	MMAA (ENSCAFG00845012165)
Canidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.n.b ##22
Canis_lupus	ANCESTRAL SPECIES		ENSGT00530000063335.B.a.b	ENSGT00990000204089	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250	ENSGT00940000158126	ENSGT00950000183030.m.a.b.a.a.a	ENSGT00640000091523	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00950000182772.A.a.b.n.b ##22	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120.lb.b	ENSGT00530000063404.a	ENSGT01050000248397
Dog	MODERN SPECIES		APBA1 (ENSCAFG00845000845)	ENTREP1 (ENSCAFG00845000882)	ENSCAFG00845000920	TJP2 (ENSCAFG00845001062)	FXN (ENSCAFG00845001342)	PIP5K1B (ENSCAFG00845001394)	TMEM252 (ENSCAFG00845001485)	PGM5 (ENSCAFG00845001506)	ENSCAFG00845001539	ZNG1A (ENSCAFG00845001577)	DOCK8 (ENSCAFG00845001647)	KANK1 (ENSCAFG00845001908)	DMRT1 (ENSCAFG00845001983)	DMRT3 (ENSCAFG00845002003)	DMRT2 (ENSCAFG00845002026)	ENSCAFG00845002045 ##22	SMARCA2 (ENSCAFG00845002161)	VLDLR (ENSCAFG00845002345)	KCNV2 (ENSCAFG00845002424)	PUM3 (ENSCAFG00845002440)	ENSCAFG00845002474	RFX3 (ENSCAFG00845002562)	ENSCAFG00845002739	GLIS3 (ENSCAFG00845002759)	SLC1A1 (ENSCAFG00845002818)	SPATA6L (ENSCAFG00845002856)	PLPP6 (ENSCAFG00845002916)	CDC37L1 (ENSCAFG00845015553)	ENSCAFG00845015626	ENSCAFG00845015667	JAK2 (ENSCAFG00845015728)
Dingo	MODERN SPECIES	125	FXN (ENSCAFG00020026605)	ENSCAFG00020026606	PIP5K1B (ENSCAFG00020026608)	PABIR1 (ENSCAFG00020026613)	TMEM252 (ENSCAFG00020026616)	PGM5 (ENSCAFG00020026619)	ENSCAFG00020026621	ENSCAFG00020026623	ENSCAFG00020026625	ENSCAFG00020026627	DOCK8 (ENSCAFG00020026637)	KANK1 (ENSCAFG00020026742)	DMRT1 (ENSCAFG00020026750)	DMRT3 (ENSCAFG00020026752)	DMRT2 (ENSCAFG00020026753)	ENSCAFG00020026759 ##22	ENSCAFG00020026766	ENSCAFG00020026802	ENSCAFG00020026863	VLDLR (ENSCAFG00020026865)	KCNV2 (ENSCAFG00020026866)	PUM3 (ENSCAFG00020026867)	RFX3 (ENSCAFG00020026868)	ENSCAFG00020026870	GLIS3 (ENSCAFG00020000104)	SLC1A1 (ENSCAFG00020000361)	SPATA6L (ENSCAFG00020000384)	PLPP6 (ENSCAFG00020000503)	CDC37L1 (ENSCAFG00020000516)	ENSCAFG00020000594	ENSCAFG00020000622
Red fox	MODERN SPECIES	61	MMP13 (ENSVVUG00000011996)	ENSVVUG00000012007	DYNC2H1 (ENSVVUG00000012126)	PDGFD (ENSVVUG00000013885)	DDI1 (ENSVVUG00000013892)	ENSVVUG00000013893	ENSVVUG00000013912	CASP12 (ENSVVUG00000013915)	ENSVVUG00000013918	ENSVVUG00000013932	GRIA4 (ENSVVUG00000013946)	ENSVVUG00000013955	MSANTD4 (ENSVVUG00000013957)	KBTBD3 (ENSVVUG00000013959)	AASDHPPT (ENSVVUG00000013961)	ENSVVUG00000013968 ##22	ENSVVUG00000013969	GUCY1A2 (ENSVVUG00000013971)	ENSVVUG00000013985	ENSVVUG00000013987	ALKBH8 (ENSVVUG00000013994)	ELMOD1 (ENSVVUG00000014009)	ENSVVUG00000014026	SLC35F2 (ENSVVUG00000014033)	ENSVVUG00000014044	CUL5 (ENSVVUG00000014050)	ENSVVUG00000014072	ACAT1 (ENSVVUG00000014076)	NPAT (ENSVVUG00000014091)	ATM (ENSVVUG00000014332)	CUNH11orf65 (ENSVVUG00000015456)
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.d	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Mustelinae	ANCESTRAL SPECIES	37	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.d	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
American mink	MODERN SPECIES	238				ASPG (ENSNVIG00000013540)	TDRD9 (ENSNVIG00000013511)	RD3L (ENSNVIG00000013504)	ENSNVIG00000013494	PPP1R13B (ENSNVIG00000013457)	ZFYVE21 (ENSNVIG00000013427)	XRCC3 (ENSNVIG00000013410)	KLC1 (ENSNVIG00000013150)	COA8 (ENSNVIG00000013115)	BAG5 (ENSNVIG00000013106)	TRMT61A (ENSNVIG00000013085)	ENSNVIG00000013077	CKB (ENSNVIG00000013050) ##22	MARK3 (ENSNVIG00000012924)	EIF5 (ENSNVIG00000012893)	ENSNVIG00000012876	TNFAIP2 (ENSNVIG00000012816)	EXOC3L4 (ENSNVIG00000012718)	LBHD2 (ENSNVIG00000012707)	CDC42BPB (ENSNVIG00000010257)	TRAF3 (ENSNVIG00000009988)	RCOR1 (ENSNVIG00000009957)	ANKRD9 (ENSNVIG00000009948)	TECPR2 (ENSNVIG00000009884)	CINP (ENSNVIG00000009847)	ENSNVIG00000009823	MOK (ENSNVIG00000009797)	WDR20 (ENSNVIG00000009765)
Ferret	MODERN SPECIES	208	ENSMPUG00000002245	ENSMPUG00000002252	KIF26A (ENSMPUG00000002257)	ASPG (ENSMPUG00000002283)	ENSMPUG00000019159	TDRD9 (ENSMPUG00000002286)	RD3L (ENSMPUG00000002293)	ATP5MJ (ENSMPUG00000002297)	PPP1R13B (ENSMPUG00000002303)	ZFYVE21 (ENSMPUG00000002309)	XRCC3 (ENSMPUG00000002329)	KLC1 (ENSMPUG00000002343)	ENSMPUG00000002350	BAG5 (ENSMPUG00000019163)	TRMT61A (ENSMPUG00000002358)	CKB (ENSMPUG00000002360) ##22	MARK3 (ENSMPUG00000002365)	EIF5 (ENSMPUG00000002368)	ENSMPUG00000002372	ENSMPUG00000019166	TNFAIP2 (ENSMPUG00000002374)	EXOC3L4 (ENSMPUG00000002379)	CDC42BPB (ENSMPUG00000002385)	ENSMPUG00000002603	TRAF3 (ENSMPUG00000002628)	ENSMPUG00000002637	RCOR1 (ENSMPUG00000002641)	TECPR2 (ENSMPUG00000002682)	CINP (ENSMPUG00000002697)	ENSMPUG00000002705	MOK (ENSMPUG00000002728)
Ursidae	ANCESTRAL SPECIES	10	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT00900000143542	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000168574	ENSGT00940000157283	ENSGT00390000015784
Ursus	ANCESTRAL SPECIES	124	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b	ENSGT00390000016760.d	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a
American black bear	MODERN SPECIES	287								PPP1R13B (ENSUAMG00000012113)	ZFYVE21 (ENSUAMG00000012107)	XRCC3 (ENSUAMG00000012103)	KLC1 (ENSUAMG00000012097)	COA8 (ENSUAMG00000012095)	BAG5 (ENSUAMG00000012094)	TRMT61A (ENSUAMG00000012092)	ENSUAMG00000012091	CKB (ENSUAMG00000012090) ##22	MARK3 (ENSUAMG00000012086)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	5	KIF26A (ENSAMEG00000030034)	ASPG (ENSAMEG00000018086)	TDRD9 (ENSAMEG00000018095)	RD3L (ENSAMEG00000030654)	ATP5MJ (ENSAMEG00000027787)	PPP1R13B (ENSAMEG00000018115)	ZFYVE21 (ENSAMEG00000018126)	XRCC3 (ENSAMEG00000018138)	KLC1 (ENSAMEG00000018143)	ENSAMEG00000026620	ENSAMEG00000029613	COA8 (ENSAMEG00000025587)	BAG5 (ENSAMEG00000019908)	TRMT61A (ENSAMEG00000018154)	ENSAMEG00000026280	CKB (ENSAMEG00000027459) ##22	MARK3 (ENSAMEG00000018163)	ENSAMEG00000030930	EIF5 (ENSAMEG00000018173)	ENSAMEG00000018185	TNFAIP2 (ENSAMEG00000018186)	ENSAMEG00000026787	EXOC3L4 (ENSAMEG00000018195)	LBHD2 (ENSAMEG00000025365)	CDC42BPB (ENSAMEG00000018199)	AMN (ENSAMEG00000018206)	TRAF3 (ENSAMEG00000018207)	RCOR1 (ENSAMEG00000018211)	ENSAMEG00000027420	TECPR2 (ENSAMEG00000018214)	CINP (ENSAMEG00000018216)
Giant Panda	MODERN SPECIES	2036																ENSAMEG00000028757 ##22
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.a.a	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000154259.l.q.a.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Cat	MODERN SPECIES	237	ENSFCAG00000040445	CB3H14orf180 (ENSFCAG00000028425)	ENSFCAG00000051790	KIF26A (ENSFCAG00000028169)	ASPG (ENSFCAG00000024828)	RD3L (ENSFCAG00000044473)	TDRD9 (ENSFCAG00000013807)	ENSFCAG00000045017	PPP1R13B (ENSFCAG00000014601)	ZFYVE21 (ENSFCAG00000021907)	XRCC3 (ENSFCAG00000022404)	KLC1 (ENSFCAG00000014599)	COA8 (ENSFCAG00000027939)	BAG5 (ENSFCAG00000029879)	TRMT61A (ENSFCAG00000030816)	CKB (ENSFCAG00000007951) ##22	MARK3 (ENSFCAG00000007949)	EIF5 (ENSFCAG00000026424)	ENSFCAG00000050434	ENSFCAG00000047159	TNFAIP2 (ENSFCAG00000002239)	EXOC3L4 (ENSFCAG00000010009)	LBHD2 (ENSFCAG00000033577)	CDC42BPB (ENSFCAG00000010004)	ENSFCAG00000043416	TRAF3 (ENSFCAG00000010003)	RCOR1 (ENSFCAG00000010430)	ANKRD9 (ENSFCAG00000045318)	TECPR2 (ENSFCAG00000004651)	CINP (ENSFCAG00000001765)	ZNF839 (ENSFCAG00000023382)
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.a.a	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000006113.t	ENSGT00390000016478.i.a	ENSGT00940000154259.l.q.a.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.a.a	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000006113.t	ENSGT00390000016478.i.a	ENSGT00940000154259.l.q.a.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116
lion	MODERN SPECIES	6	ENSPLOG00000006726	TMEM179 (ENSPLOG00000006708)	ENSPLOG00000006691	KIF26A (ENSPLOG00000006651)	ASPG (ENSPLOG00000006591)	RD3L (ENSPLOG00000006561)	TDRD9 (ENSPLOG00000006449)	ENSPLOG00000006405	PPP1R13B (ENSPLOG00000006341)	ZFYVE21 (ENSPLOG00000006306)	XRCC3 (ENSPLOG00000006278)	KLC1 (ENSPLOG00000006195)	COA8 (ENSPLOG00000006136)	BAG5 (ENSPLOG00000006121)	TRMT61A (ENSPLOG00000006104)	CKB (ENSPLOG00000006084) ##22	MARK3 (ENSPLOG00000005746)	ENSPLOG00000005629	ENSPLOG00000005614	EIF5 (ENSPLOG00000005586)	ENSPLOG00000005488	ENSPLOG00000005470	TNFAIP2 (ENSPLOG00000005453)	EXOC3L4 (ENSPLOG00000005398)	LBHD2 (ENSPLOG00000005383)	CDC42BPB (ENSPLOG00000005343)	ENSPLOG00000010859	AMN (ENSPLOG00000010781)	TRAF3 (ENSPLOG00000010717)	RCOR1 (ENSPLOG00000010640)	ANKRD9 (ENSPLOG00000010606)
leopard	MODERN SPECIES	162	ENSPPRG00000010978	TMEM179 (ENSPPRG00000011611)	ENSPPRG00000011765	KIF26A (ENSPPRG00000014773)	ASPG (ENSPPRG00000017404)	RD3L (ENSPPRG00000018965)	TDRD9 (ENSPPRG00000021286)	ATP5MJ (ENSPPRG00000024632)	PPP1R13B (ENSPPRG00000024524)	ZFYVE21 (ENSPPRG00000024411)	XRCC3 (ENSPPRG00000024187)	KLC1 (ENSPPRG00000007813)	ENSPPRG00000009346	BAG5 (ENSPPRG00000015369)	TRMT61A (ENSPPRG00000009410)	CKB (ENSPPRG00000010140) ##22	MARK3 (ENSPPRG00000021469)	ENSPPRG00000015728	EIF5 (ENSPPRG00000000987)	ENSPPRG00000001183
Tiger	MODERN SPECIES	490	ENSPTIG00000013911	ENSPTIG00000014779	ENSPTIG00000015395	SIVA1 (ENSPTIG00000015456)	ADSS1 (ENSPTIG00000015676)	ASPG (ENSPTIG00000016326)	TDRD9 (ENSPTIG00000017411)	RD3L (ENSPTIG00000019597)	ATP5MJ (ENSPTIG00000019687)	PPP1R13B (ENSPTIG00000019969)	ZFYVE21 (ENSPTIG00000020854)	XRCC3 (ENSPTIG00000021183)	KLC1 (ENSPTIG00000021796)	ENSPTIG00000012187	TRMT61A (ENSPTIG00000012664)	CKB (ENSPTIG00000012834) ##22	MARK3 (ENSPTIG00000013919)	ENSPTIG00000005685	EIF5 (ENSPTIG00000017471)	TNFAIP2 (ENSPTIG00000017712)	EXOC3L4 (ENSPTIG00000017928)	LBHD2 (ENSPTIG00000018933)	ENSPTIG00000020371	TRAF3 (ENSPTIG00000020503)	RCOR1 (ENSPTIG00000004161)	ENSPTIG00000005734	ENSPTIG00000005992	CINP (ENSPTIG00000006788)	ENSPTIG00000007428	MOK (ENSPTIG00000008365)	ENSPTIG00000009917
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Suina	ANCESTRAL SPECIES	24	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Pig	MODERN SPECIES	162	ENSSSCG00000039825	KIF26A (ENSSSCG00000035093)	ASPG (ENSSSCG00000039553)	RD3L (ENSSSCG00000060746)	TDRD9 (ENSSSCG00000002552)	ENSSSCG00000045485	PPP1R13B (ENSSSCG00000002544)	ZFYVE21 (ENSSSCG00000040945)	XRCC3 (ENSSSCG00000002546)	ENSSSCG00000063242	KLC1 (ENSSSCG00000002547)	COA8 (ENSSSCG00000054301)	BAG5 (ENSSSCG00000037197)	TRMT61A (ENSSSCG00000034738)	ENSSSCG00000031003	CKB (ENSSSCG00000021220) ##22	MARK3 (ENSSSCG00000021669)	EIF5 (ENSSSCG00000034709)	ENSSSCG00000036820	TNFAIP2 (ENSSSCG00000036612)	EXOC3L4 (ENSSSCG00000036871)	CDC42BPB (ENSSSCG00000002523)	AMN (ENSSSCG00000002524)	TRAF3 (ENSSSCG00000002525)	RCOR1 (ENSSSCG00000002526)	ENSSSCG00000039713	TECPR2 (ENSSSCG00000002528)	CINP (ENSSSCG00000002530)	ENSSSCG00000002532	MOK (ENSSSCG00000002531)	WDR20 (ENSSSCG00000002533)
Chacoan peccary	MODERN SPECIES	880			KIF26A (ENSCWAG00000007238)	ASPG (ENSCWAG00000007137)	ENSCWAG00000007116	RD3L (ENSCWAG00000007102)	TDRD9 (ENSCWAG00000007001)	ENSCWAG00000006973	PPP1R13B (ENSCWAG00000006884)	ZFYVE21 (ENSCWAG00000006849)	XRCC3 (ENSCWAG00000006808)	KLC1 (ENSCWAG00000006712)	COA8 (ENSCWAG00000006664)	BAG5 (ENSCWAG00000006653)	TRMT61A (ENSCWAG00000006642)	CKB (ENSCWAG00000006618) ##22	MARK3 (ENSCWAG00000006380)	EIF5 (ENSCWAG00000006314)	ENSCWAG00000006307
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Cetacea	ANCESTRAL SPECIES	2	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000154384.h.a	ENSGT00940000157283	ENSGT00390000015784
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Dolphin	MODERN SPECIES	2012											XRCC3 (ENSTTRG00000006460)	KLC1 (ENSTTRG00000006459)	COA8 (ENSTTRG00000006458)	BAG5 (ENSTTRG00000006457)	TRMT61A (ENSTTRG00000006456)	CKB (ENSTTRG00000006455) ##22	MARK3 (ENSTTRG00000006452)
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01010000228353	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Monodontidae	ANCESTRAL SPECIES	26	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT01010000228353	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000235753	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283	ENSGT00390000015784
Narwhal	MODERN SPECIES	308	TMEM179 (ENSMMNG00015014610)	ENSMMNG00015014589	ENSMMNG00015014577	KIF26A (ENSMMNG00015014549)	ASPG (ENSMMNG00015014499)	RD3L (ENSMMNG00015014464)	TDRD9 (ENSMMNG00015014417)	ENSMMNG00015014390	PPP1R13B (ENSMMNG00015014332)	ZFYVE21 (ENSMMNG00015014286)	XRCC3 (ENSMMNG00015014266)	KLC1 (ENSMMNG00015014208)	COA8 (ENSMMNG00015014143)	BAG5 (ENSMMNG00015014139)	TRMT61A (ENSMMNG00015014129)	CKB (ENSMMNG00015014110) ##22	ENSMMNG00015014099	MARK3 (ENSMMNG00015014017)	ENSMMNG00015013949	ENSMMNG00015013933	TNFAIP2 (ENSMMNG00015013920)	EXOC3L4 (ENSMMNG00015013889)	LBHD2 (ENSMMNG00015013874)	CDC42BPB (ENSMMNG00015013841)	AMN (ENSMMNG00015013798)	TRAF3 (ENSMMNG00015013763)	RCOR1 (ENSMMNG00015013705)	ANKRD9 (ENSMMNG00015013682)	ENSMMNG00015013666	TECPR2 (ENSMMNG00015013625)	CINP (ENSMMNG00015013590)
Beluga whale	MODERN SPECIES	24	ENSDLEG00000000309	TMEM179 (ENSDLEG00000000320)	ENSDLEG00000000335	ENSDLEG00000000348	KIF26A (ENSDLEG00000000396)	ASPG (ENSDLEG00000000515)	TDRD9 (ENSDLEG00000000618)	RD3L (ENSDLEG00000000672)	PPP1R13B (ENSDLEG00000000743)	ZFYVE21 (ENSDLEG00000000949)	XRCC3 (ENSDLEG00000000989)	KLC1 (ENSDLEG00000001054)	COA8 (ENSDLEG00000001165)	BAG5 (ENSDLEG00000001182)	TRMT61A (ENSDLEG00000001196)	CKB (ENSDLEG00000001218) ##22	MARK3 (ENSDLEG00000001258)	EIF5 (ENSDLEG00000001302)	ENSDLEG00000001352	TNFAIP2 (ENSDLEG00000001359)	EXOC3L4 (ENSDLEG00000001375)	CDC42BPB (ENSDLEG00000001399)	AMN (ENSDLEG00000001433)	TRAF3 (ENSDLEG00000001452)	RCOR1 (ENSDLEG00000001485)	ANKRD9 (ENSDLEG00000001519)	TECPR2 (ENSDLEG00000001533)	ENSDLEG00000001591	CINP (ENSDLEG00000001608)	ZNF839 (ENSDLEG00000001625)	MOK (ENSDLEG00000001645)
Vaquita	MODERN SPECIES	11	ENSPSNG00000015303	KIF26A (ENSPSNG00000014965)	ASPG (ENSPSNG00000014407)	RD3L (ENSPSNG00000014337)	TDRD9 (ENSPSNG00000013566)	ENSPSNG00000013455	PPP1R13B (ENSPSNG00000013178)	ENSPSNG00000013100	XRCC3 (ENSPSNG00000013033)	KLC1 (ENSPSNG00000012826)	ENSPSNG00000012724	COA8 (ENSPSNG00000012697)	BAG5 (ENSPSNG00000012676)	TRMT61A (ENSPSNG00000012637)	ENSPSNG00000012596	CKB (ENSPSNG00000012548) ##22	MARK3 (ENSPSNG00000012281)	ENSPSNG00000012168	ENSPSNG00000012141	TNFAIP2 (ENSPSNG00000012073)	EXOC3L4 (ENSPSNG00000011928)	LBHD2 (ENSPSNG00000011857)	CDC42BPB (ENSPSNG00000011659)	AMN (ENSPSNG00000011318)	TRAF3 (ENSPSNG00000011207)	RCOR1 (ENSPSNG00000010958)	ANKRD9 (ENSPSNG00000010929)	TECPR2 (ENSPSNG00000010841)	CINP (ENSPSNG00000010761)	ZNF839 (ENSPSNG00000010719)	MOK (ENSPSNG00000010592)
Sperm whale	MODERN SPECIES	2	ENSPCTG00005006624	TMEM179 (ENSPCTG00005006558)	C11H14orf180 (ENSPCTG00005006532)	KIF26A (ENSPCTG00005006474)	ASPG (ENSPCTG00005006345)	RD3L (ENSPCTG00005006295)	TDRD9 (ENSPCTG00005006109)	ATP5MPL (ENSPCTG00005006071)	PPP1R13B (ENSPCTG00005006003)	ZFYVE21 (ENSPCTG00005005897)	XRCC3 (ENSPCTG00005005844)	KLC1 (ENSPCTG00005005646)	COA8 (ENSPCTG00005005582)	BAG5 (ENSPCTG00005005570)	TRMT61A (ENSPCTG00005005546)	CKB (ENSPCTG00005005518) ##22	MARK3 (ENSPCTG00005005307)	EIF5 (ENSPCTG00005005244)	TNFAIP2 (ENSPCTG00005005189)	EXOC3L4 (ENSPCTG00005005116)	CDC42BPB (ENSPCTG00005004748)	AMN (ENSPCTG00005004683)	TRAF3 (ENSPCTG00005004489)	RCOR1 (ENSPCTG00005004435)	ANKRD9 (ENSPCTG00005004420)	ENSPCTG00005004397	TECPR2 (ENSPCTG00005004290)	CINP (ENSPCTG00005004231)	ENSPCTG00005004207	DYNC1H1 (ENSPCTG00005004117)	ENSPCTG00005004094
Blue whale	MODERN SPECIES	11	ENSBMSG00010011497	ENSBMSG00010011486	KIF26A (ENSBMSG00010011458)	ASPG (ENSBMSG00010011404)	ENSBMSG00010011374	RD3L (ENSBMSG00010011364)	TDRD9 (ENSBMSG00010011272)	PPP1R13B (ENSBMSG00010011198)	ZFYVE21 (ENSBMSG00010011171)	XRCC3 (ENSBMSG00010011089)	KLC1 (ENSBMSG00010010987)	COA8 (ENSBMSG00010010944)	BAG5 (ENSBMSG00010010931)	TRMT61A (ENSBMSG00010010915)	ENSBMSG00010010903	CKB (ENSBMSG00010010891) ##22	MARK3 (ENSBMSG00010010141)	ENSBMSG00010010060	ENSBMSG00010010040	ENSBMSG00010010035	TNFAIP2 (ENSBMSG00010010020)	EXOC3L4 (ENSBMSG00010009998)	ENSBMSG00010009989	CDC42BPB (ENSBMSG00010008073)	AMN (ENSBMSG00010007702)	TRAF3 (ENSBMSG00010007683)	RCOR1 (ENSBMSG00010007663)	ANKRD9 (ENSBMSG00010007653)	ENSBMSG00010007643	TECPR2 (ENSBMSG00010007624)	CINP (ENSBMSG00010007610)
Pecora	ANCESTRAL SPECIES	18	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Percora_a	ANCESTRAL SPECIES	20	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Bovidae	ANCESTRAL SPECIES	20	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Caprinae	ANCESTRAL SPECIES	36	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.b.a	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582.d
Goat	MODERN SPECIES	13	BTBD6 (ENSCHIG00000012041)	ENSCHIG00000013979	TMEM179 (ENSCHIG00000018701)	ENSCHIG00000026025	ASPG (ENSCHIG00000025636)	RD3L (ENSCHIG00000025061)	TDRD9 (ENSCHIG00000011541)	ENSCHIG00000015712	PPP1R13B (ENSCHIG00000018367)	ZFYVE21 (ENSCHIG00000012789)	XRCC3 (ENSCHIG00000021019)	KLC1 (ENSCHIG00000017179)	COA8 (ENSCHIG00000024142)	BAG5 (ENSCHIG00000011895)	TRMT61A (ENSCHIG00000021168)	CKB (ENSCHIG00000017850) ##22	MARK3 (ENSCHIG00000018506)	EIF5 (ENSCHIG00000021283)	ENSCHIG00000011000	ENSCHIG00000009953	ENSCHIG00000006615	ENSCHIG00000015133	EXOC3L4 (ENSCHIG00000012030)	LBHD2 (ENSCHIG00000016749)	CDC42BPB (ENSCHIG00000025348)	AMN (ENSCHIG00000008517)	TRAF3 (ENSCHIG00000026463)	RCOR1 (ENSCHIG00000020773)	ANKRD9 (ENSCHIG00000024878)	TECPR2 (ENSCHIG00000015446)	CINP (ENSCHIG00000021794)
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020019462	ENSOARG00020019411	TMEM179 (ENSOARG00020019369)	KIF26A (ENSOARG00020018926)	ASPG (ENSOARG00020018531)	RD3L (ENSOARG00020018479)	TDRD9 (ENSOARG00020017845)	ENSOARG00020017719	PPP1R13B (ENSOARG00020017481)	ZFYVE21 (ENSOARG00020017435)	ENSOARG00020017370	KLC1 (ENSOARG00020016907)	COA8 (ENSOARG00020016820)	BAG5 (ENSOARG00020016804)	TRMT61A (ENSOARG00020016758)	CKB (ENSOARG00020016713) ##22	MARK3 (ENSOARG00020015010)	EIF5 (ENSOARG00020014840)	ENSOARG00020014771	ENSOARG00020014751	TNFAIP2 (ENSOARG00020014380)	LBHD2 (ENSOARG00020014332)	CDC42BPB (ENSOARG00020014102)	AMN (ENSOARG00020014007)	TRAF3 (ENSOARG00020013868)	RCOR1 (ENSOARG00020013701)	ANKRD9 (ENSOARG00020013669)	TECPR2 (ENSOARG00020013345)	CINP (ENSOARG00020013201)	MOK (ENSOARG00020012890)	WDR20 (ENSOARG00020012746)
Bovinae	ANCESTRAL SPECIES	19	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Bos	ANCESTRAL SPECIES	18	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a.m.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
Bos_b	ANCESTRAL SPECIES	18	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00950000185142	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a.m.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784.g
Hybrid Bos Indicus	MODERN SPECIES	13	TMEM179 (ENSBIXG00005012856)	ENSBIXG00005012885	KIF26A (ENSBIXG00005012948)	ASPG (ENSBIXG00005013016)	RD3L (ENSBIXG00005013046)	TDRD9 (ENSBIXG00005013101)	ENSBIXG00005013147	PPP1R13B (ENSBIXG00005013207)	ZFYVE21 (ENSBIXG00005013238)	ENSBIXG00005005839	KLC1 (ENSBIXG00005013345)	BAG5 (ENSBIXG00005013374)	COA8 (ENSBIXG00005013417)	TRMT61A (ENSBIXG00005013436)	ENSBIXG00005013451	CKB (ENSBIXG00005013465) ##22	MARK3 (ENSBIXG00005013647)	ENSBIXG00005013727	EIF5 (ENSBIXG00005007534)	TNFAIP2 (ENSBIXG00005013949)	EXOC3L4 (ENSBIXG00005014043)	LBHD2 (ENSBIXG00005014064)	CDC42BPB (ENSBIXG00005014455)	AMN (ENSBIXG00005014541)	TRAF3 (ENSBIXG00005014683)	RCOR1 (ENSBIXG00005002063)	ANKRD9 (ENSBIXG00005014737)	TECPR2 (ENSBIXG00005014758)	ENSBIXG00005002093	ENSBIXG00005014886	MOK (ENSBIXG00005002183)
Cow	MODERN SPECIES	13	ENSBTAG00000054250	TMEM179 (ENSBTAG00000006673)	C21H14orf180 (ENSBTAG00000022775)	KIF26A (ENSBTAG00000021904)	ASPG (ENSBTAG00000017194)	RD3L (ENSBTAG00000046401)	TDRD9 (ENSBTAG00000020402)	ATP5MJ (ENSBTAG00000026886)	PPP1R13B (ENSBTAG00000003559)	ZFYVE21 (ENSBTAG00000003556)	XRCC3 (ENSBTAG00000009966)	KLC1 (ENSBTAG00000017299)	COA8 (ENSBTAG00000021199)	TRMT61A (ENSBTAG00000031327)	ENSBTAG00000050863	CKB (ENSBTAG00000035998) ##22	MARK3 (ENSBTAG00000013410)	ENSBTAG00000052838	EIF5 (ENSBTAG00000016282)	ENSBTAG00000048602	ENSBTAG00000047319	TNFAIP2 (ENSBTAG00000035995)	ENSBTAG00000049333	EXOC3L4 (ENSBTAG00000026893)	CDC42BPB (ENSBTAG00000016456)	AMN (ENSBTAG00000015750)	TRAF3 (ENSBTAG00000013475)	ENSBTAG00000046633	RCOR1 (ENSBTAG00000002336)	ANKRD9 (ENSBTAG00000010882)	TECPR2 (ENSBTAG00000012143)
Bos_a	ANCESTRAL SPECIES	10	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000235753	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a.m.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00940000159582
Wild yak	MODERN SPECIES	1592									ENSBMUG00000021691	ENSBMUG00000021631	KLC1 (ENSBMUG00000021318)	COA8 (ENSBMUG00000020927)	BAG5 (ENSBMUG00000020916)	TRMT61A (ENSBMUG00000020902)	ENSBMUG00000020887	CKB (ENSBMUG00000020883) ##22	MARK3 (ENSBMUG00000020761)	EIF5 (ENSBMUG00000020600)	ENSBMUG00000020589
Domestic yak	MODERN SPECIES	8	ENSBGRG00000005143	ENSBGRG00000005088	ENSBGRG00000005062	KIF26A (ENSBGRG00000004995)	ASPG (ENSBGRG00000004910)	RD3L (ENSBGRG00000004882)	TDRD9 (ENSBGRG00000004595)	ENSBGRG00000004548	ZFYVE21 (ENSBGRG00000004348)	ENSBGRG00000004194	KLC1 (ENSBGRG00000003931)	COA8 (ENSBGRG00000003846)	BAG5 (ENSBGRG00000003800)	TRMT61A (ENSBGRG00000024382)	ENSBGRG00000024357	CKB (ENSBGRG00000024311) ##22	MARK3 (ENSBGRG00000023429)	EIF5 (ENSBGRG00000023240)	ENSBGRG00000023228	ENSBGRG00000023041	ENSBGRG00000022967	EXOC3L4 (ENSBGRG00000022807)	LBHD2 (ENSBGRG00000022778)	AMN (ENSBGRG00000017746)	TRAF3 (ENSBGRG00000017554)	ENSBGRG00000017508	ENSBGRG00000017492	RCOR1 (ENSBGRG00000017037)	ANKRD9 (ENSBGRG00000016991)	TECPR2 (ENSBGRG00000016292)	CINP (ENSBGRG00000016013)
American bison	MODERN SPECIES	3216				ASPG (ENSBBBG00000011673)	TDRD9 (ENSBBBG00000011627)	RD3L (ENSBBBG00000011601)	ENSBBBG00000025488	PPP1R13B (ENSBBBG00000025430)	ENSBBBG00000025291	KLC1 (ENSBBBG00000025259)	ENSBBBG00000008050	ENSBBBG00000024861	ENSBBBG00000024856	BAG5 (ENSBBBG00000006546)	TRMT61A (ENSBBBG00000006541)	CKB (ENSBBBG00000024829) ##22	ENSBBBG00000006806	MARK3 (ENSBBBG00000007721)	EIF5 (ENSBBBG00000024526)	ENSBBBG00000024496	ENSBBBG00000006381	LBHD2 (ENSBBBG00000024466)	CDC42BPB (ENSBBBG00000024454)	TRAF3 (ENSBBBG00000008712)	ENSBBBG00000024266	RCOR1 (ENSBBBG00000000286)	ENSBBBG00000024185	TECPR2 (ENSBBBG00000006291)	CINP (ENSBBBG00000024144)	ENSBBBG00000024008	WDR20 (ENSBBBG00000023985)
Siberian musk deer	MODERN SPECIES	217	ENSMMSG00000011279	TMEM179 (ENSMMSG00000011218)	ENSMMSG00000011200	KIF26A (ENSMMSG00000011156)	ENSMMSG00000010971	TDRD9 (ENSMMSG00000010943)	RD3L (ENSMMSG00000010920)	ATP5MJ (ENSMMSG00000010881)	PPP1R13B (ENSMMSG00000010805)	ZFYVE21 (ENSMMSG00000010743)	XRCC3 (ENSMMSG00000010698)	KLC1 (ENSMMSG00000010580)	COA8 (ENSMMSG00000010481)	BAG5 (ENSMMSG00000010459)	TRMT61A (ENSMMSG00000010423)	CKB (ENSMMSG00000010378) ##22	MARK3 (ENSMMSG00000010148)	ENSMMSG00000010055	ENSMMSG00000010036	ENSMMSG00000010019	TNFAIP2 (ENSMMSG00000009966)	EXOC3L4 (ENSMMSG00000009913)	LBHD2 (ENSMMSG00000009887)	CDC42BPB (ENSMMSG00000009763)	AMN (ENSMMSG00000009731)	TRAF3 (ENSMMSG00000009622)	RCOR1 (ENSMMSG00000009566)	ANKRD9 (ENSMMSG00000009547)	ENSMMSG00000009523
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	4	ENSCHYG00000006388	ENSCHYG00000006381	KIF26A (ENSCHYG00000006246)	ASPG (ENSCHYG00000006023)	TDRD9 (ENSCHYG00000005960)	RD3L (ENSCHYG00000005926)	ATP5MJ (ENSCHYG00000005881)	PPP1R13B (ENSCHYG00000005719)	ZFYVE21 (ENSCHYG00000005622)	XRCC3 (ENSCHYG00000005585)	KLC1 (ENSCHYG00000005243)	ENSCHYG00000005153	BAG5 (ENSCHYG00000005133)	TRMT61A (ENSCHYG00000005120)	ENSCHYG00000005109	ENSCHYG00000005021 ##22	MARK3 (ENSCHYG00000004852)	EIF5 (ENSCHYG00000004810)	ENSCHYG00000004803	ENSCHYG00000004798	ENSCHYG00000004788	ENSCHYG00000004783	TNFAIP2 (ENSCHYG00000004766)	EXOC3L4 (ENSCHYG00000004724)	LBHD2 (ENSCHYG00000004703)	CDC42BPB (ENSCHYG00000004562)	ENSCHYG00000004509	TRAF3 (ENSCHYG00000016275)	RCOR1 (ENSCHYG00000016056)	ANKRD9 (ENSCHYG00000015938)	ENSCHYG00000015918
Yarkand deer	MODERN SPECIES	14	GNPTAB (ENSCHYG00000026007)	SYCP3 (ENSCHYG00000025959)	CHPT1 (ENSCHYG00000025883)	MYBPC1 (ENSCHYG00000024823)	SPIC (ENSCHYG00000024724)	ARL1 (ENSCHYG00000024652)	UTP20 (ENSCHYG00000024333)	SLC5A8 (ENSCHYG00000024213)	ANO4 (ENSCHYG00000023758)	GAS2L3 (ENSCHYG00000023599)	NR1H4 (ENSCHYG00000023219)	SLC17A8 (ENSCHYG00000023010)	SCYL2 (ENSCHYG00000022642)	ACTR6 (ENSCHYG00000022511)	BLTP3B (ENSCHYG00000022150)	ENSCHYG00000022096 ##22	ANKS1B (ENSCHYG00000020900)	APAF1 (ENSCHYG00000019906)	IKBIP (ENSCHYG00000019783)	ENSCHYG00000019744	ENSCHYG00000019480	ENSCHYG00000019270	ENSCHYG00000019199	NEDD1 (ENSCHYG00000018895)	CFAP54 (ENSCHYG00000018187)	ENSCHYG00000018145	CDK17 (ENSCHYG00000017640)	ELK3 (ENSCHYG00000017527)	LTA4H (ENSCHYG00000017296)	HAL (ENSCHYG00000016993)	AMDHD1 (ENSCHYG00000016862)
Camelidae	ANCESTRAL SPECIES	8	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00390000001214	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000016760.c.a.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478.i.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00610000087423	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Arabian camel	MODERN SPECIES	32	ENSCDRG00005000086	TMEM179 (ENSCDRG00005000074)	ENSCDRG00005000064	KIF26A (ENSCDRG00005008650)	ASPG (ENSCDRG00005008457)	RD3L (ENSCDRG00005008419)	TDRD9 (ENSCDRG00005007986)	ENSCDRG00005007908	PPP1R13B (ENSCDRG00005007666)	ZFYVE21 (ENSCDRG00005007593)	XRCC3 (ENSCDRG00005007547)	KLC1 (ENSCDRG00005007246)	COA8 (ENSCDRG00005007168)	BAG5 (ENSCDRG00005007138)	TRMT61A (ENSCDRG00005007111)	CKB (ENSCDRG00005007042) ##22	MARK3 (ENSCDRG00005006645)	EIF5 (ENSCDRG00005006567)	ENSCDRG00005006551	TNFAIP2 (ENSCDRG00005006503)	EXOC3L4 (ENSCDRG00005006387)	LBHD2 (ENSCDRG00005006329)	CDC42BPB (ENSCDRG00005006234)	AMN (ENSCDRG00005006162)	TRAF3 (ENSCDRG00005006052)	RCOR1 (ENSCDRG00005005960)	TECPR2 (ENSCDRG00005005800)	CINP (ENSCDRG00005005759)	ZNF839 (ENSCDRG00005005718)	MOK (ENSCDRG00005005668)	WDR20 (ENSCDRG00005005620)
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Lepidosauria	ANCESTRAL SPECIES	27			ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
tuatara	MODERN SPECIES	1558					KIF26A (ENSSPUG00000004827)	ASPG (ENSSPUG00000004653)	TDRD9 (ENSSPUG00000004504)	RD3L (ENSSPUG00000004476)	PPP1R13B (ENSSPUG00000004468)	ZFYVE21 (ENSSPUG00000004453)	XRCC3 (ENSSPUG00000004439)	KLC1 (ENSSPUG00000004341)	COA8 (ENSSPUG00000004317)	BAG5 (ENSSPUG00000004310)	TRMT61A (ENSSPUG00000004293)	CKB (ENSSPUG00000004247) ##22	MARK3 (ENSSPUG00000004212)	EIF5 (ENSSPUG00000004139)	ENSSPUG00000004130
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00390000001610.f	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01040000244769	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00390000001610.f	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01040000244769	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00940000159582	ENSGT00390000007686.b.d
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	35	ENSSMRG00000001761	TMEM179 (ENSSMRG00000001764)	KIF26A (ENSSMRG00000001803)	ENSSMRG00000001839	ENSSMRG00000001864	TDRD9 (ENSSMRG00000002065)	RD3L (ENSSMRG00000002085)	PPP1R13B (ENSSMRG00000002090)	ZFYVE21 (ENSSMRG00000002143)	XRCC3 (ENSSMRG00000002153)	KLC1 (ENSSMRG00000002165)	ENSSMRG00000002203	COA8 (ENSSMRG00000002206)	BAG5 (ENSSMRG00000002208)	TRMT61A (ENSSMRG00000002217)	ENSSMRG00000002221 ##22	MARK3 (ENSSMRG00000002223)	EIF5 (ENSSMRG00000002253)	TNFAIP2 (ENSSMRG00000002264)	ENSSMRG00000002295	ENSSMRG00000002299	ENSSMRG00000002316	CDC42BPB (ENSSMRG00000002349)	AMN (ENSSMRG00000002387)	TRAF3 (ENSSMRG00000002419)	RCOR1 (ENSSMRG00000002465)	ANKRD9 (ENSSMRG00000002516)	TECPR2 (ENSSMRG00000002541)	ENSSMRG00000002550	CINP (ENSSMRG00000002552)	MOK (ENSSMRG00000002561)
Argentine black and white tegu	MODERN SPECIES	12	PRAF2 (ENSSMRG00000019240)	CCDC120 (ENSSMRG00000019239)	TFE3 (ENSSMRG00000019237)	GRIPAP1 (ENSSMRG00000019236)	ENSSMRG00000019235	OTUD5 (ENSSMRG00000019233)	PIM2 (ENSSMRG00000019232)	SLC35A2 (ENSSMRG00000019231)	PQBP1 (ENSSMRG00000019230)	TIMM17B (ENSSMRG00000019229)	ENSSMRG00000019228	CDK20 (ENSSMRG00000019227)	ENSSMRG00000019226	HDAC6 (ENSSMRG00000019223)	ENSSMRG00000019221	ENSSMRG00000019220 ##22	ENSSMRG00000019219	ENSSMRG00000019211	PFKFB1 (ENSSMRG00000019210)	APEX2 (ENSSMRG00000019209)	ALAS2 (ENSSMRG00000019208)	PRICKLE3 (ENSSMRG00000019206)	ENSSMRG00000019205	ENSSMRG00000019204	ITIH6 (ENSSMRG00000019135)	PHF8 (ENSSMRG00000019134)	FAM120C (ENSSMRG00000019133)	SSR4 (ENSSMRG00000019131)	WNK3 (ENSSMRG00000019129)	TSR2 (ENSSMRG00000019128)	FGD1 (ENSSMRG00000019064)
Common wall lizard	MODERN SPECIES		ENSPMRG00000005608	INF2 (ENSPMRG00000005621)	TMEM179 (ENSPMRG00000005643)	ASPG (ENSPMRG00000005655)	TDRD9 (ENSPMRG00000005698)	RD3L (ENSPMRG00000005767)	ENSPMRG00000005774	PPP1R13B (ENSPMRG00000005835)	ZFYVE21 (ENSPMRG00000006010)	XRCC3 (ENSPMRG00000006030)	KLC1 (ENSPMRG00000000046)	COA8 (ENSPMRG00000000047)	BAG5 (ENSPMRG00000000048)	ENSPMRG00000000049	TRMT61A (ENSPMRG00000000050)	CKB (ENSPMRG00000000051) ##22	ENSPMRG00000000052	MARK3 (ENSPMRG00000000055)	EIF5 (ENSPMRG00000000059)	TNFAIP2 (ENSPMRG00000000063)	ENSPMRG00000000065	CDC42BPB (ENSPMRG00000000071)	ENSPMRG00000000077	ENSPMRG00000000078	TRAF3 (ENSPMRG00000000082)	RCOR1 (ENSPMRG00000000084)	ENSPMRG00000000085	ANKRD9 (ENSPMRG00000000086)	TECPR2 (ENSPMRG00000000123)	ENSPMRG00000000348	MOK (ENSPMRG00000000373)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00390000001610.f	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01040000244769	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b
Lizard	MODERN SPECIES	846															TRMT61A (ENSACAG00000000860)	CKB (ENSACAG00000000789) ##22	MARK3 (ENSACAG00000000652)	EIF5 (ENSACAG00000000485)	ENSACAG00000000473	TNFAIP2 (ENSACAG00000000366)	ENSACAG00000028260	ENSACAG00000038694	CDC42BPB (ENSACAG00000000214)	ENSACAG00000043360	AMN (ENSACAG00000000207)	ENSACAG00000043264	TRAF3 (ENSACAG00000000202)	ENSACAG00000043804	ENSACAG00000035613	RCOR1 (ENSACAG00000000182)	ANKRD9 (ENSACAG00000000180)
Elapidae	ANCESTRAL SPECIES	3	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00940000156103.h
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000157058	ENSGT00870000136707	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00940000156103.h	ENSGT01030000234620.a.a.a.a.a.b.d
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00940000157058	ENSGT00870000136707	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610.e	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00940000156103.h	ENSGT01030000234620.a.a.a.a.a.b.c
Eastern brown snake	MODERN SPECIES	10	CEP170B (ENSPTXG00000014952)	ENSPTXG00000014951	INF2 (ENSPTXG00000014950)	TMEM179 (ENSPTXG00000014949)	KIF26A (ENSPTXG00000014948)	ASPG (ENSPTXG00000014946)	TDRD9 (ENSPTXG00000014945)	RD3L (ENSPTXG00000014943)	PPP1R13B (ENSPTXG00000014936)	ZFYVE21 (ENSPTXG00000014932)	XRCC3 (ENSPTXG00000014928)	KLC1 (ENSPTXG00000014922)	COA8 (ENSPTXG00000014918)	BAG5 (ENSPTXG00000014916)	TRMT61A (ENSPTXG00000014914)	CKB (ENSPTXG00000014912) ##22	MARK3 (ENSPTXG00000014907)	EIF5 (ENSPTXG00000014900)	ENSPTXG00000014897	ENSPTXG00000014894	CDC42BPB (ENSPTXG00000014886)	TRAF3 (ENSPTXG00000014831)	RCOR1 (ENSPTXG00000014828)	ANKRD9 (ENSPTXG00000014826)	TECPR2 (ENSPTXG00000014824)	CINP (ENSPTXG00000014823)	MOK (ENSPTXG00000014822)	WDR20 (ENSPTXG00000014821)	ENSPTXG00000014820	HSP90AA1 (ENSPTXG00000014819)	DYNC1H1 (ENSPTXG00000014617)
Mainland tiger snake	MODERN SPECIES	31	ENSNSUG00000018268	ENSNSUG00000018267	INF2 (ENSNSUG00000018266)	TMEM179 (ENSNSUG00000018265)	KIF26A (ENSNSUG00000018264)	ASPG (ENSNSUG00000018262)	TDRD9 (ENSNSUG00000018261)	RD3L (ENSNSUG00000018260)	PPP1R13B (ENSNSUG00000018258)	ZFYVE21 (ENSNSUG00000018257)	XRCC3 (ENSNSUG00000018256)	KLC1 (ENSNSUG00000017146)	COA8 (ENSNSUG00000017138)	BAG5 (ENSNSUG00000017137)	TRMT61A (ENSNSUG00000017136)	CKB (ENSNSUG00000017135) ##22	MARK3 (ENSNSUG00000017112)
Blue-lipped sea krait	MODERN SPECIES	5329															ENSLLTG00000008907	CKB (ENSLLTG00000008892) ##22	ENSLLTG00000008874
Indian cobra	MODERN SPECIES		ENSNNAG00000002468	ENSNNAG00000002460	INF2 (ENSNNAG00000002215)	TMEM179 (ENSNNAG00000002157)	KIF26A (ENSNNAG00000002137)	ASPG (ENSNNAG00000002110)	RD3L (ENSNNAG00000002097)	TDRD9 (ENSNNAG00000002011)	PPP1R13B (ENSNNAG00000001963)	ZFYVE21 (ENSNNAG00000001939)	XRCC3 (ENSNNAG00000001910)	KLC1 (ENSNNAG00000001861)	COA8 (ENSNNAG00000001843)	BAG5 (ENSNNAG00000001835)	TRMT61A (ENSNNAG00000001827)	CKB (ENSNNAG00000001817) ##22	MARK3 (ENSNNAG00000001732)	EIF5 (ENSNNAG00000001684)	ENSNNAG00000001613	ENSNNAG00000001571	CDC42BPB (ENSNNAG00000001542)	TRAF3 (ENSNNAG00000001458)	RCOR1 (ENSNNAG00000001407)	ANKRD9 (ENSNNAG00000001383)	TECPR2 (ENSNNAG00000001359)	CINP (ENSNNAG00000001334)	ENSNNAG00000001317	MOK (ENSNNAG00000001306)	WDR20 (ENSNNAG00000001295)	HSP90AA1 (ENSNNAG00000001276)	ENSNNAG00000001266
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o.f	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Testudinidae	ANCESTRAL SPECIES	37	ENSGT00390000015553.a.b.a	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o.f	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.o.e	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Goode s thornscrub tortoise	MODERN SPECIES	18	SIVA1 (ENSGEVG00005002396)	ADSS1 (ENSGEVG00005002439)	INF2 (ENSGEVG00005002490)	TMEM179 (ENSGEVG00005002509)	ASPG (ENSGEVG00005002564)	TDRD9 (ENSGEVG00005002591)	RD3L (ENSGEVG00005002616)	ENSGEVG00005002623	PPP1R13B (ENSGEVG00005002644)	ZFYVE21 (ENSGEVG00005002689)	XRCC3 (ENSGEVG00005002713)	KLC1 (ENSGEVG00005002735)	COA8 (ENSGEVG00005002759)	BAG5 (ENSGEVG00005002774)	TRMT61A (ENSGEVG00005002782)	CKB (ENSGEVG00005002791) ##22	ENSGEVG00005002800	MARK3 (ENSGEVG00005002845)	EIF5 (ENSGEVG00005002933)	ENSGEVG00005002961	ENSGEVG00005002976	ENSGEVG00005002989	CDC42BPB (ENSGEVG00005003012)	AMN (ENSGEVG00005003066)	TRAF3 (ENSGEVG00005003080)	RCOR1 (ENSGEVG00005003100)	ANKRD9 (ENSGEVG00005003116)	TECPR2 (ENSGEVG00005003131)	CINP (ENSGEVG00005003155)	ZNF839 (ENSGEVG00005003160)	MOK (ENSGEVG00005003176)
Abingdon island giant tortoise	MODERN SPECIES	2833	ENSCABG00000022031	ENSCABG00000022030	TMEM179 (ENSCABG00000022028)	KIF26A (ENSCABG00000022021)	ASPG (ENSCABG00000022017)	TDRD9 (ENSCABG00000022014)	RD3L (ENSCABG00000022011)	ENSCABG00000022010	PPP1R13B (ENSCABG00000021988)	ZFYVE21 (ENSCABG00000021986)	XRCC3 (ENSCABG00000021985)	KLC1 (ENSCABG00000021157)	COA8 (ENSCABG00000021038)	BAG5 (ENSCABG00000021037)	TRMT61A (ENSCABG00000021033)	CKB (ENSCABG00000021028) ##22	ENSCABG00000021025	ENSCABG00000021022	MARK3 (ENSCABG00000021018)	EIF5 (ENSCABG00000021009)	TNFAIP2 (ENSCABG00000021007)	ENSCABG00000021005	ENSCABG00000021003	CDC42BPB (ENSCABG00000017229)	AMN (ENSCABG00000017018)	TRAF3 (ENSCABG00000016980)
Emydidae	ANCESTRAL SPECIES	43	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000153118.db.a.a.b.a.a.a.b.a.a	ENSGT01100000263506.a	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o.f	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784
painted turtle	MODERN SPECIES	701	ADSS1 (ENSCPBG00000020185)	INF2 (ENSCPBG00000020190)	TMEM179 (ENSCPBG00000020195)	KIF26A (ENSCPBG00000020200)	ASPG (ENSCPBG00000020202)	TDRD9 (ENSCPBG00000020203)	RD3L (ENSCPBG00000020206)	ENSCPBG00000020209	PPP1R13B (ENSCPBG00000020221)	ZFYVE21 (ENSCPBG00000020236)	XRCC3 (ENSCPBG00000020246)	KLC1 (ENSCPBG00000020262)	COA8 (ENSCPBG00000020283)	BAG5 (ENSCPBG00000020285)	TRMT61A (ENSCPBG00000020287)	CKB (ENSCPBG00000020289) ##22	ENSCPBG00000020294	MARK3 (ENSCPBG00000020304)	EIF5 (ENSCPBG00000020321)	ENSCPBG00000020327	TNFAIP2 (ENSCPBG00000020328)	EXOC3L4 (ENSCPBG00000020331)	ENSCPBG00000020336	PPP1R36 (ENSCPBG00000020341)	BRF1 (ENSCPBG00000020355)	BTBD6 (ENSCPBG00000020362)	NUDT14 (ENSCPBG00000020368)	ENSCPBG00000020372	JAG2 (ENSCPBG00000020376)	ENSCPBG00000020384	CDCA4 (ENSCPBG00000020385)
Three-toed box turtle	MODERN SPECIES	87	ADSS1 (ENSTMTG00000017241)	INF2 (ENSTMTG00000017189)	TMEM179 (ENSTMTG00000017156)	KIF26A (ENSTMTG00000017129)	ASPG (ENSTMTG00000017026)	TDRD9 (ENSTMTG00000016940)	RD3L (ENSTMTG00000016920)	ENSTMTG00000016912	PPP1R13B (ENSTMTG00000016842)	ZFYVE21 (ENSTMTG00000016813)	XRCC3 (ENSTMTG00000016806)	KLC1 (ENSTMTG00000016744)	COA8 (ENSTMTG00000016730)	BAG5 (ENSTMTG00000016723)	TRMT61A (ENSTMTG00000016715)	CKB (ENSTMTG00000016679) ##22	ENSTMTG00000016649	MARK3 (ENSTMTG00000016575)	EIF5 (ENSTMTG00000016550)	ENSTMTG00000016536	TNFAIP2 (ENSTMTG00000016496)	EXOC3L4 (ENSTMTG00000016474)	ENSTMTG00000016459	CDC42BPB (ENSTMTG00000016376)	AMN (ENSTMTG00000016350)	TRAF3 (ENSTMTG00000016218)	RCOR1 (ENSTMTG00000016172)	ANKRD9 (ENSTMTG00000016152)	TECPR2 (ENSTMTG00000016089)	CINP (ENSTMTG00000016061)	ENSTMTG00000016045
Chinese turtle	MODERN SPECIES	1684															TRMT61A (ENSPSIG00000015186)	CKB (ENSPSIG00000014479) ##22	MARK3 (ENSPSIG00000012322)
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Australian saltwater crocodile	MODERN SPECIES	64	ENSCPRG00005015958	ADSS1 (ENSCPRG00005015931)	INF2 (ENSCPRG00005015924)	TMEM179 (ENSCPRG00005015921)	KIF26A (ENSCPRG00005015914)	ASPG (ENSCPRG00005015909)	RD3L (ENSCPRG00005015908)	TDRD9 (ENSCPRG00005015883)	ENSCPRG00005015875	PPP1R13B (ENSCPRG00005015869)	ZFYVE21 (ENSCPRG00005015861)	XRCC3 (ENSCPRG00005015856)	KLC1 (ENSCPRG00005015847)	BAG5 (ENSCPRG00005015845)	TRMT61A (ENSCPRG00005015843)	CKB (ENSCPRG00005015837) ##22	MARK3 (ENSCPRG00005015816)	EIF5 (ENSCPRG00005015803)	TNFAIP2 (ENSCPRG00005015793)	EXOC3L4 (ENSCPRG00005015790)	ENSCPRG00005015787	CDC42BPB (ENSCPRG00005013613)	AMN (ENSCPRG00005013401)	TRAF3 (ENSCPRG00005013397)	RCOR1 (ENSCPRG00005013335)	ANKRD9 (ENSCPRG00005013319)	TECPR2 (ENSCPRG00005013314)	CINP (ENSCPRG00005013311)	ZNF839 (ENSCPRG00005013306)	MOK (ENSCPRG00005013302)	WDR20 (ENSCPRG00005013296)
Aves	ANCESTRAL SPECIES	2	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
African ostrich	MODERN SPECIES	631	INF2 (ENSSCUG00000009391)	TMEM179 (ENSSCUG00000009385)	ENSSCUG00000009381	KIF26A (ENSSCUG00000009371)	ASPG (ENSSCUG00000009367)	TDRD9 (ENSSCUG00000009364)	RD3L (ENSSCUG00000009360)	ENSSCUG00000009358	PPP1R13B (ENSSCUG00000009352)	ZFYVE21 (ENSSCUG00000009346)	XRCC3 (ENSSCUG00000009341)	COA8 (ENSSCUG00000009337)	KLC1 (ENSSCUG00000009335)	BAG5 (ENSSCUG00000009333)	TRMT61A (ENSSCUG00000009332)	CKB (ENSSCUG00000009331) ##22	MARK3 (ENSSCUG00000009325)	EIF5 (ENSSCUG00000009314)	ENSSCUG00000009310	TNFAIP2 (ENSSCUG00000009309)	EXOC3L4 (ENSSCUG00000009306)	ENSSCUG00000009304	CDC42BPB (ENSSCUG00000009294)	ENSSCUG00000009285	TRAF3 (ENSSCUG00000009278)	RCOR1 (ENSSCUG00000009272)	TECPR2 (ENSSCUG00000009270)	CINP (ENSSCUG00000009269)	ZNF839 (ENSSCUG00000009267)	MOK (ENSSCUG00000009265)	WDR20 (ENSSCUG00000009264)
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Common canary	MODERN SPECIES	3	SIVA1 (ENSSCAG00000006412)	ADSS1 (ENSSCAG00000006419)	INF2 (ENSSCAG00000006426)	TMEM179 (ENSSCAG00000006441)	KIF26A (ENSSCAG00000006458)	ASPG (ENSSCAG00000006462)	RD3L (ENSSCAG00000006493)	ENSSCAG00000006497	PPP1R13B (ENSSCAG00000006505)	ZFYVE21 (ENSSCAG00000006542)	XRCC3 (ENSSCAG00000006549)	KLC1 (ENSSCAG00000006554)	COA8 (ENSSCAG00000006564)	BAG5 (ENSSCAG00000006565)	TRMT61A (ENSSCAG00000006568)	CKB (ENSSCAG00000006573) ##22	ENSSCAG00000006575	MARK3 (ENSSCAG00000006579)	EIF5 (ENSSCAG00000006596)	ENSSCAG00000006610	TNFAIP2 (ENSSCAG00000006616)	EXOC3L4 (ENSSCAG00000006619)	ENSSCAG00000006626	CDC42BPB (ENSSCAG00000006631)	AMN (ENSSCAG00000006654)	TRAF3 (ENSSCAG00000006668)	RCOR1 (ENSSCAG00000006687)	ANKRD9 (ENSSCAG00000006693)	TECPR2 (ENSSCAG00000006698)	CINP (ENSSCAG00000006723)	ZNF839 (ENSSCAG00000006724)
Zebra finch	MODERN SPECIES	27	AKT1 (ENSTGUG00000012904)	ENSTGUG00000012902	ADSS1 (ENSTGUG00000012901)	INF2 (ENSTGUG00000012898)	TMEM179 (ENSTGUG00000029779)	KIF26A (ENSTGUG00000012894)	ASPG (ENSTGUG00000012891)	RD3L (ENSTGUG00000012886)	TDRD9 (ENSTGUG00000012887)	PPP1R13B (ENSTGUG00000012883)	ZFYVE21 (ENSTGUG00000012879)	XRCC3 (ENSTGUG00000012872)	KLC1 (ENSTGUG00000012874)	BAG5 (ENSTGUG00000012866)	TRMT61A (ENSTGUG00000012865)	CKB (ENSTGUG00000012861) ##22	MARK3 (ENSTGUG00000012848)	EIF5 (ENSTGUG00000012841)	ENSTGUG00000012839	TNFAIP2 (ENSTGUG00000012835)	EXOC3L4 (ENSTGUG00000012834)	ENSTGUG00000020932	CDC42BPB (ENSTGUG00000012826)	AMN (ENSTGUG00000012825)	TRAF3 (ENSTGUG00000012821)	RCOR1 (ENSTGUG00000012820)	ANKRD9 (ENSTGUG00000012819)	TECPR2 (ENSTGUG00000012816)	CINP (ENSTGUG00000012815)	ZNF839 (ENSTGUG00000012812)	WDR20 (ENSTGUG00000012810)
Medium ground finch	MODERN SPECIES	6	ENSGFOG00000008491	TMEM179 (ENSGFOG00000008487)	KIF26A (ENSGFOG00000008481)	ASPG (ENSGFOG00000008460)	TDRD9 (ENSGFOG00000008422)	RD3L (ENSGFOG00000008409)	ENSGFOG00000008405	PPP1R13B (ENSGFOG00000008387)	ZFYVE21 (ENSGFOG00000008376)	XRCC3 (ENSGFOG00000008368)	KLC1 (ENSGFOG00000008356)	ENSGFOG00000008347	BAG5 (ENSGFOG00000008343)	TRMT61A (ENSGFOG00000008333)	ENSGFOG00000008329	CKB (ENSGFOG00000008315) ##22	MARK3 (ENSGFOG00000008237)	EIF5 (ENSGFOG00000008215)	TNFAIP2 (ENSGFOG00000008204)	ENSGFOG00000008193	CDC42BPB (ENSGFOG00000007354)	AMN (ENSGFOG00000007277)	TRAF3 (ENSGFOG00000007259)	RCOR1 (ENSGFOG00000007179)	TECPR2 (ENSGFOG00000007128)	CINP (ENSGFOG00000007122)	ZNF839 (ENSGFOG00000007114)	WDR20 (ENSGFOG00000007108)	HSP90AA1 (ENSGFOG00000007098)	DYNC1H1 (ENSGFOG00000006784)	PPP2R5C (ENSGFOG00000006704)
Flycatcher	MODERN SPECIES	24	AKT1 (ENSFALG00000002974)	ADSS1 (ENSFALG00000002967)	INF2 (ENSFALG00000002942)	TMEM179 (ENSFALG00000002938)	KIF26A (ENSFALG00000027781)	ASPG (ENSFALG00000002919)	TDRD9 (ENSFALG00000002911)	RD3L (ENSFALG00000002905)	ENSFALG00000002903	PPP1R13B (ENSFALG00000002885)	ZFYVE21 (ENSFALG00000025223)	XRCC3 (ENSFALG00000002874)	KLC1 (ENSFALG00000002870)	BAG5 (ENSFALG00000028902)	TRMT61A (ENSFALG00000002855)	CKB (ENSFALG00000002845) ##22	MARK3 (ENSFALG00000002834)	ENSFALG00000002816	ENSFALG00000002809	TNFAIP2 (ENSFALG00000002805)	EXOC3L4 (ENSFALG00000002799)	ENSFALG00000002795	CDC42BPB (ENSFALG00000002787)	AMN (ENSFALG00000002778)	TRAF3 (ENSFALG00000024309)	RCOR1 (ENSFALG00000002760)	ANKRD9 (ENSFALG00000026771)	TECPR2 (ENSFALG00000002756)	CINP (ENSFALG00000002753)	ENSFALG00000002740	WDR20 (ENSFALG00000027732)
Great tit	MODERN SPECIES	25	ADSS1 (ENSPMJG00000000977)	INF2 (ENSPMJG00000000946)	TMEM179 (ENSPMJG00000000866)	KIF26A (ENSPMJG00000000742)	ASPG (ENSPMJG00000000689)	RD3L (ENSPMJG00000000680)	TDRD9 (ENSPMJG00000000607)	ENSPMJG00000000602	PPP1R13B (ENSPMJG00000000511)	ZFYVE21 (ENSPMJG00000000476)	XRCC3 (ENSPMJG00000000462)	KLC1 (ENSPMJG00000000403)	COA8 (ENSPMJG00000000392)	BAG5 (ENSPMJG00000000386)	TRMT61A (ENSPMJG00000000367)	CKB (ENSPMJG00000000334) ##22	MARK3 (ENSPMJG00000000134)	EIF5 (ENSPMJG00000000070)	ENSPMJG00000017335	TNFAIP2 (ENSPMJG00000017334)	ENSPMJG00000017333	EXOC3L4 (ENSPMJG00000017332)	ENSPMJG00000017330	CDC42BPB (ENSPMJG00000017329)	AMN (ENSPMJG00000017328)	TRAF3 (ENSPMJG00000017327)	RCOR1 (ENSPMJG00000017325)	ANKRD9 (ENSPMJG00000017323)	TECPR2 (ENSPMJG00000017322)	CINP (ENSPMJG00000017321)	ZNF839 (ENSPMJG00000017320)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT01030000234848	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.o.d	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Kakapo	MODERN SPECIES	21	ADSS1 (ENSSHBG00005011467)	INF2 (ENSSHBG00005011499)	TMEM179 (ENSSHBG00005011522)	KIF26A (ENSSHBG00005011575)	ASPG (ENSSHBG00005011634)	TDRD9 (ENSSHBG00005011669)	RD3L (ENSSHBG00005011705)	ENSSHBG00005011720	PPP1R13B (ENSSHBG00005011748)	ZFYVE21 (ENSSHBG00005011794)	XRCC3 (ENSSHBG00005011815)	KLC1 (ENSSHBG00005011850)	COA8 (ENSSHBG00005011882)	BAG5 (ENSSHBG00005011899)	TRMT61A (ENSSHBG00005011913)	CKB (ENSSHBG00005011927) ##22	ENSSHBG00005011946	MARK3 (ENSSHBG00005011987)	EIF5 (ENSSHBG00005012032)	ENSSHBG00005012075	ENSSHBG00005012162	ENSSHBG00005012183	CDC42BPB (ENSSHBG00005012211)	AMN (ENSSHBG00005000515)	TRAF3 (ENSSHBG00005000526)	RCOR1 (ENSSHBG00005000534)	ANKRD9 (ENSSHBG00005000537)	TECPR2 (ENSSHBG00005000551)	CINP (ENSSHBG00005010419)	ZNF839 (ENSSHBG00005010446)	ENSSHBG00005010479
Golden eagle	MODERN SPECIES	11	ADSS1 (ENSACCG00020014725)	INF2 (ENSACCG00020014757)	TMEM179 (ENSACCG00020014775)	KIF26A (ENSACCG00020014793)	ASPG (ENSACCG00020014821)	TDRD9 (ENSACCG00020014851)	RD3L (ENSACCG00020014869)	ENSACCG00020014880	PPP1R13B (ENSACCG00020014921)	ZFYVE21 (ENSACCG00020015003)	XRCC3 (ENSACCG00020015032)	KLC1 (ENSACCG00020015060)	COA8 (ENSACCG00020015086)	BAG5 (ENSACCG00020015101)	TRMT61A (ENSACCG00020015111)	CKB (ENSACCG00020015131) ##22	MARK3 (ENSACCG00020015194)	EIF5 (ENSACCG00020015299)	TNFAIP2 (ENSACCG00020015321)	EXOC3L4 (ENSACCG00020015336)	ENSACCG00020000291	ENSACCG00020000293	CDC42BPB (ENSACCG00020000371)	AMN (ENSACCG00020000429)	TRAF3 (ENSACCG00020000453)	RCOR1 (ENSACCG00020000489)	ANKRD9 (ENSACCG00020000518)	TECPR2 (ENSACCG00020000563)	CINP (ENSACCG00020000602)	ZNF839 (ENSACCG00020000654)	MOK (ENSACCG00020000690)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463.i	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283.db	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463.i	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283.db	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Turkey	MODERN SPECIES	25	ADSS1 (ENSMGAG00000013451)	ENSMGAG00000017690	ENSMGAG00000013449	TMEM179 (ENSMGAG00000013443)	KIF26A (ENSMGAG00000013441)	ASPG (ENSMGAG00000013435)	RD3L (ENSMGAG00000019047)	TDRD9 (ENSMGAG00000013431)	ENSMGAG00000019587	PPP1R13B (ENSMGAG00000013421)	ZFYVE21 (ENSMGAG00000019643)	XRCC3 (ENSMGAG00000013417)	KLC1 (ENSMGAG00000013413)	BAG5 (ENSMGAG00000015387)	TRMT61A (ENSMGAG00000013412)	CKB (ENSMGAG00000013407) ##22	MARK3 (ENSMGAG00000013401)	EIF5 (ENSMGAG00000013398)	TNFAIP2 (ENSMGAG00000013394)	EXOC3L4 (ENSMGAG00000013393)	ENSMGAG00000021489	CDC42BPB (ENSMGAG00000013377)	AMN (ENSMGAG00000019544)	TRAF3 (ENSMGAG00000013373)	RCOR1 (ENSMGAG00000013372)	ANKRD9 (ENSMGAG00000018888)	ENSMGAG00000022478	ENSMGAG00000013366	CINP (ENSMGAG00000022897)	ZNF839 (ENSMGAG00000013364)	MOK (ENSMGAG00000013359)
Chicken	MODERN SPECIES	34	INF2 (ENSGALG00010017283)	TMEM179 (ENSGALG00010016897)	KIF26A (ENSGALG00010016247)	ASPG (ENSGALG00010016159)	RD3L (ENSGALG00010016115)	TDRD9 (ENSGALG00010016086)	C14orf2 (ENSGALG00010016066)	ENSGALG00010018488	ENSGALG00010018486	ZFYVE21 (ENSGALG00010016049)	XRCC3 (ENSGALG00010016004)	KLC1 (ENSGALG00010015964)	COA8 (ENSGALG00010015916)	BAG5 (ENSGALG00010015906)	TRMT61A (ENSGALG00010015879)	CKB (ENSGALG00010015804) ##22	MARK3 (ENSGALG00010015792)	EIF5 (ENSGALG00010015759)	ENSGALG00010015706	TNFAIP2 (ENSGALG00010015698)	EXOC3L4 (ENSGALG00010015691)	ENSGALG00010015643	CDC42BPB (ENSGALG00010015157)	AMN (ENSGALG00010015137)	TRAF3 (ENSGALG00010017049)	RCOR1 (ENSGALG00010016918)	ANKRD9 (ENSGALG00010017304)	TECPR2 (ENSGALG00010017248)	CINP (ENSGALG00010017208)	ZNF839 (ENSGALG00010017187)	MOK (ENSGALG00010017148)
Japanese quail	MODERN SPECIES	23	ADSS1 (ENSCJPG00005003017)	ENSCJPG00005003016	ENSCJPG00005003014	TMEM179 (ENSCJPG00005003011)	KIF26A (ENSCJPG00005002989)	ASPG (ENSCJPG00005002984)	RD3L (ENSCJPG00005002982)	ENSCJPG00005002980	TDRD9 (ENSCJPG00005002971)	PPP1R13B (ENSCJPG00005002964)	ZFYVE21 (ENSCJPG00005002962)	XRCC3 (ENSCJPG00005002960)	KLC1 (ENSCJPG00005002948)	BAG5 (ENSCJPG00005002943)	TRMT61A (ENSCJPG00005002938)	CKB (ENSCJPG00005002930) ##22	MARK3 (ENSCJPG00005002892)	EIF5 (ENSCJPG00005002874)	ENSCJPG00005002868	TNFAIP2 (ENSCJPG00005002857)	EXOC3L4 (ENSCJPG00005002850)	ENSCJPG00005002845	CDC42BPB (ENSCJPG00005002807)	ENSCJPG00005002800	TRAF3 (ENSCJPG00005002792)	RCOR1 (ENSCJPG00005002777)	ANKRD9 (ENSCJPG00005002774)	TECPR2 (ENSCJPG00005002769)	ENSCJPG00005002765	ZNF839 (ENSCJPG00005002762)	MOK (ENSCJPG00005002758)
Anatidae	ANCESTRAL SPECIES	9	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000171479	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT01030000235387	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555.m	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a.p	ENSGT01030000234613.b.a.a.o	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582
Pink-footed goose	MODERN SPECIES	99	INF2 (ENSABRG00000012307)	TMEM179 (ENSABRG00000012263)	ENSABRG00000012252	KIF26A (ENSABRG00000012218)	ASPG (ENSABRG00000012178)	RD3L (ENSABRG00000012171)	TDRD9 (ENSABRG00000012064)	ENSABRG00000012044	PPP1R13B (ENSABRG00000011987)	ZFYVE21 (ENSABRG00000011932)	XRCC3 (ENSABRG00000011924)	KLC1 (ENSABRG00000011905)	COA8 (ENSABRG00000011845)	BAG5 (ENSABRG00000011837)	TRMT61A (ENSABRG00000011832)	CKB (ENSABRG00000011821) ##22	ENSABRG00000011812	MARK3 (ENSABRG00000011751)	EIF5 (ENSABRG00000011716)	ENSABRG00000011706	TNFAIP2 (ENSABRG00000011698)	EXOC3L4 (ENSABRG00000011682)	ENSABRG00000011677	ENSABRG00000011667	CDC42BPB (ENSABRG00000011640)	AMN (ENSABRG00000011621)	TRAF3 (ENSABRG00000011595)	RCOR1 (ENSABRG00000011524)	ANKRD9 (ENSABRG00000011496)	TECPR2 (ENSABRG00000011320)	ENSABRG00000011296
Duck	DUPLICATION
Duck	MODERN SPECIES	710																ENSAPLG00000022859 ##22
Duck	MODERN SPECIES	23	INF2 (ENSAPLG00000015886)	TMEM179 (ENSAPLG00000007213)	ENSAPLG00000029958	ENSAPLG00000029098	ASPG (ENSAPLG00000008103)	RD3L (ENSAPLG00000007355)	TDRD9 (ENSAPLG00000007429)	ENSAPLG00000029834	PPP1R13B (ENSAPLG00000007222)	ZFYVE21 (ENSAPLG00000007132)	XRCC3 (ENSAPLG00000006917)	ENSAPLG00000006410	ENSAPLG00000028568	BAG5 (ENSAPLG00000001982)	TRMT61A (ENSAPLG00000011344)	ENSAPLG00000010931 ##22	MARK3 (ENSAPLG00000010536)	EIF5 (ENSAPLG00000015675)	ENSAPLG00000015755	TNFAIP2 (ENSAPLG00000012637)	ENSAPLG00000027314	ENSAPLG00000010511	CDC42BPB (ENSAPLG00000010525)	AMN (ENSAPLG00000011646)	TRAF3 (ENSAPLG00000011933)	ENSAPLG00000019480	RCOR1 (ENSAPLG00000012214)	ANKRD9 (ENSAPLG00000017806)	TECPR2 (ENSAPLG00000012414)	CINP (ENSAPLG00000012968)	ZNF839 (ENSAPLG00000013003)
Anura	ANCESTRAL SPECIES	22	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000160538	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751	ENSGT00940000159582	ENSGT00390000007686.b.d
Frog	MODERN SPECIES	8	kif26a (ENSXETG00000023080)	aspg (ENSXETG00000023076)	ENSXETG00000036467	rd3l (ENSXETG00000037614)	tdrd9 (ENSXETG00000023069)	ENSXETG00000046748	ENSXETG00000039943	ppp1r13b (ENSXETG00000023064)	zfyve21 (ENSXETG00000023062)	xrcc3 (ENSXETG00000023061)	ENSXETG00000048629	klc1 (ENSXETG00000023054)	bag5 (ENSXETG00000023051)	trmt61a (ENSXETG00000026907)	ENSXETG00000037885	ckb (ENSXETG00000023038) ##22	mark3 (ENSXETG00000012767)	eif5 (ENSXETG00000012766)	tnfaip2 (ENSXETG00000032847)	exoc3l4 (ENSXETG00000048509)	XB5959262 [provisional:lbh] (ENSXETG00000039630)	cdc42bpb (ENSXETG00000025675)	amn (ENSXETG00000012751)	traf3 (ENSXETG00000012746)	ENSXETG00000044836	rcor1 (ENSXETG00000012743)	ankrd9 (ENSXETG00000047849)	tecpr2 (ENSXETG00000010256)	cinp (ENSXETG00000010255)	znf839 (ENSXETG00000034448)	mok (ENSXETG00000031912)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000023394	B9D2 (ENSLLEG00000023473)	CCDC97 (ENSLLEG00000023523)	HNRNPUL1 (ENSLLEG00000023596)	ENSLLEG00000023859	ENSLLEG00000023960	ENSLLEG00000023989	ENSLLEG00000024052	ENSLLEG00000024221	ENSLLEG00000024275	ENSLLEG00000024325	ENSLLEG00000024704	ENSLLEG00000024869	ENSLLEG00000024890	ENSLLEG00000024923	ENSLLEG00000025062 ##22	ENSLLEG00000025104	ENSLLEG00000025172	ENSLLEG00000025269	AXL (ENSLLEG00000025337)	ENSLLEG00000019816	ENSLLEG00000019840	ENSLLEG00000019907	ENSLLEG00000020013	ENSLLEG00000020169	ENSLLEG00000020222	ENSLLEG00000020307	ENSLLEG00000020415	ENSLLEG00000020511	ENSLLEG00000021268	ENSLLEG00000021421
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	4	KIF26A (ENSLLEG00000021526)	ENSLLEG00000021479	ENSLLEG00000021453	ASPG (ENSLLEG00000021055)	RD3L (ENSLLEG00000020992)	TDRD9 (ENSLLEG00000020393)	ENSLLEG00000020297	ENSLLEG00000020209	PPP1R13B (ENSLLEG00000019728)	ZFYVE21 (ENSLLEG00000023198)	XRCC3 (ENSLLEG00000023112)	KLC1 (ENSLLEG00000022478)	ENSLLEG00000022424	COA8 (ENSLLEG00000022330)	BAG5 (ENSLLEG00000022289)	ENSLLEG00000022228 ##22	TRMT61A (ENSLLEG00000020392)	MARK3 (ENSLLEG00000020743)	EIF5 (ENSLLEG00000020253)	ENSLLEG00000020191	DYNC1H1 (ENSLLEG00000019315)	HSP90AA1 (ENSLLEG00000018506)	WDR20 (ENSLLEG00000018292)	MOK (ENSLLEG00000018125)	ENSLLEG00000017660	ENSLLEG00000017564	ENSLLEG00000017433	ENSLLEG00000017397	ENSLLEG00000016858	ENSLLEG00000016729	CDC42BPB (ENSLLEG00000015661)
Leishan spiny toad	MODERN SPECIES	956															ENSLLEG00000009298	ENSLLEG00000009337 ##22
Actinopterygii	ANCESTRAL SPECIES	63	ENSGT00940000156899	ENSGT00940000158583	ENSGT00940000155077	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00970000193712	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834	ENSGT01030000234517.H.a	ENSGT00390000009816	ENSGT00390000003299	ENSGT00940000158450	ENSGT00940000164423	ENSGT00390000017490	ENSGT00390000012351	ENSGT00390000015485	ENSGT00940000155832
Reedfish	MODERN SPECIES	7	ppm1aa (ENSECRG00000016240)	dhrs7 (ENSECRG00000016268)	pcnx4 (ENSECRG00000016288)	LRRC9 (ENSECRG00000016327)	RTN1 (ENSECRG00000016438)	ENSECRG00000016464	tdrd9 (ENSECRG00000016554)	atp5mj (ENSECRG00000016809)	ppp1r13bb (ENSECRG00000016829)	zfyve21 (ENSECRG00000016882)	xrcc3 (ENSECRG00000016923)	klc1a (ENSECRG00000016965)	coa8 (ENSECRG00000017048)	bag5 (ENSECRG00000017120)	trmt61a (ENSECRG00000017134)	ckba (ENSECRG00000017166) ##22	ENSECRG00000017225	mark3a (ENSECRG00000017396)	eif5 (ENSECRG00000018080)	ENSECRG00000018122	ENSECRG00000018166	ENSECRG00000018222	ENSECRG00000018278	cdc42bpb (ENSECRG00000018358)	AMN (ENSECRG00000018635)	TRAF3 (ENSECRG00000018733)	rcor1 (ENSECRG00000018779)	ankrd9 (ENSECRG00000018801)	tecpr2 (ENSECRG00000018822)	cinp (ENSECRG00000018863)	ENSECRG00000018884
Neopterygii	ANCESTRAL SPECIES	43	ENSGT00940000156899	ENSGT00940000158583	ENSGT00940000155077	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a	ENSGT00940000159639	ENSGT00930000151053	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b ##22	ENSGT00970000193712	ENSGT00940000154862	ENSGT00390000016478	ENSGT01030000234613.b.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000164834.b	ENSGT01030000234517.H.a	ENSGT00390000007463	ENSGT00940000163836.b	ENSGT00940000155654	ENSGT00390000018116	ENSGT00940000157283	ENSGT00390000015784	ENSGT00390000002751
Spotted gar	MODERN SPECIES	673	six1b (ENSLOCG00000010086)	six6a (ENSLOCG00000010080)	ppm1aa (ENSLOCG00000010070)	dhrs7 (ENSLOCG00000010060)	pcnx4 (ENSLOCG00000010048)	LRRC9 (ENSLOCG00000010036)	rtn1b (ENSLOCG00000010017)	tdrd9 (ENSLOCG00000009992)	RD3L (ENSLOCG00000009985)	ppp1r13bb (ENSLOCG00000009968)	zfyve21 (ENSLOCG00000009956)	xrcc3 (ENSLOCG00000009948)	klc1a (ENSLOCG00000009937)	bag5 (ENSLOCG00000009928)	trmt61a (ENSLOCG00000009920)	ckba (ENSLOCG00000009908) ##22	mark3a (ENSLOCG00000009889)	eif5 (ENSLOCG00000009881)	tnfaip2a (ENSLOCG00000009874)	ENSLOCG00000009862	si:dkeyp-72h1.1 (ENSLOCG00000009854)	cdc42bpb (ENSLOCG00000009847)	AMN (ENSLOCG00000009838)	traf3 (ENSLOCG00000009826)	rcor1 (ENSLOCG00000009821)	ankrd9 (ENSLOCG00000009816)	tecpr2 (ENSLOCG00000009804)	cinp (ENSLOCG00000009791)	ENSLOCG00000009783	ehd4 (ENSLOCG00000009774)	SPTBN5 (ENSLOCG00000009748)
Osteoglossocephalai	ANCESTRAL SPECIES	17				ENSGT00940000159639	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00940000166988	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00930000151053	ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b	ENSGT00390000016478	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164834.b	ENSGT01030000234517.H.a	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	85	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000156116.B	ENSGT00940000164854.b	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.a	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.y ##22	ENSGT01030000234848	ENSGT00940000154862.x.a.a.b	ENSGT00390000016478.a	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT01030000234517.H.a	ENSGT00940000162008	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT01100000263537.b.b.c.b	ENSGT00950000183024.a.b.b.k	ENSGT00950000183095.a.b.a.b.a	ENSGT00390000017583	ENSGT00940000159485
Asian bonytongue	MODERN SPECIES	6	ppp2r5eb (ENSSFOG00015013333)	INF2 (ENSSFOG00015013387)	KCNH5 (ENSSFOG00015013498)	gphb5 (ENSSFOG00015013528)	ENSSFOG00015026395	esr2b (ENSSFOG00015013629)	ENSSFOG00015013684	nudt14 (ENSSFOG00015026877)	brf1b (ENSSFOG00015013763)	btbd6b (ENSSFOG00015028046)	zfyve21 (ENSSFOG00015013789)	klc1a (ENSSFOG00015013834)	coa8 (ENSSFOG00015013934)	bag5 (ENSSFOG00015032065)	trmt61a (ENSSFOG00015032190)	CKB (ENSSFOG00015012559) ##22	ENSSFOG00015028031	ENSSFOG00015024793	mark3b (ENSSFOG00015014033)	eif5 (ENSSFOG00015014173)	ENSSFOG00015014202	ENSSFOG00015014222	ENSSFOG00015014234	ENSSFOG00015014250	cdc42bpb (ENSSFOG00015014302)	ENSSFOG00015014557	ENSSFOG00015014569	ENSSFOG00015026321	cdca4 (ENSSFOG00015014598)	gpr132b (ENSSFOG00015014606)	vipas39 (ENSSFOG00015014621)
P. kingsleyae	MODERN SPECIES	215	KCNH5 (ENSPKIG00000018565)	gphb5 (ENSPKIG00000018593)	ENSPKIG00000018623	ENSPKIG00000018674	ENSPKIG00000018755	esr2b (ENSPKIG00000018813)	ENSPKIG00000018868	NUDT14 (ENSPKIG00000018920)	brf1b (ENSPKIG00000018964)	btbd6b (ENSPKIG00000019025)	zfyve21 (ENSPKIG00000019061)	KLC1 (ENSPKIG00000019107)	coa8 (ENSPKIG00000019126)	bag5 (ENSPKIG00000019147)	trmt61a (ENSPKIG00000019170)	CKB (ENSPKIG00000019193) ##22	ENSPKIG00000019219	mark3b (ENSPKIG00000019336)	eif5 (ENSPKIG00000019525)
Osteoglossiformes	ANCESTRAL SPECIES	491														ENSGT00940000155720.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.z ##22	ENSGT00940000154862.x.a.a.a	ENSGT00390000016478.b	ENSGT01030000234613.b.a.a.d
P. kingsleyae	MODERN SPECIES	475													ENSPKIG00000009376	ZBTB25 (ENSPKIG00000009393)	xrcc3 (ENSPKIG00000009412)	CKB (ENSPKIG00000009426) ##22	MARK3 (ENSPKIG00000009515)	EIF5 (ENSPKIG00000009676)	ENSPKIG00000009703
Asian bonytongue	MODERN SPECIES	23	paqr7b (ENSSFOG00015021484)	ENSSFOG00015027073	ptprub (ENSSFOG00015011919)	ENSSFOG00015011989	ENSSFOG00015011999	taf12 (ENSSFOG00015028702)	rab42b (ENSSFOG00015012088)	ctps1b (ENSSFOG00015012240)	cited4b (ENSSFOG00015012426)	SCMH1 (ENSSFOG00015012440)	ENSSFOG00015012489	MED18 (ENSSFOG00015012516)	btbd6b (ENSSFOG00015012519)	xrcc3 (ENSSFOG00015012540)	ENSSFOG00015012580	CKB (ENSSFOG00015013978) ##22	mark3b (ENSSFOG00015012596)	si:dkey-177p2.6 (ENSSFOG00015029150)	ahsa1a (ENSSFOG00015012724)	sel1l (ENSSFOG00015012779)	chga (ENSSFOG00015012826)	tmem251 (ENSSFOG00015012838)	ENSSFOG00015012854	ubr7 (ENSSFOG00015012865)	ENSSFOG00015012883	ASB2 (ENSSFOG00015012902)	ENSSFOG00015012927	zgc:100846 (ENSSFOG00015030089)	LINGO2 (ENSSFOG00015012996)	ENSSFOG00015013041	ENSSFOG00015024976
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	17	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155144.n	ENSGT00390000012424.b
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab ##22	ENSGT00940000154862.x.b	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155144.n
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.ab ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.ab ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Pinecone sodierfish	MODERN SPECIES	14	ENSMMDG00005013873	ENSMMDG00005013875	ENSMMDG00005013877	gphb5 (ENSMMDG00005013879)	ENSMMDG00005013887	esr2b (ENSMMDG00005013970)	ENSMMDG00005013989	ENSMMDG00005014008	brf1a (ENSMMDG00005014581)	BTBD6 (ENSMMDG00005014588)	zfyve21 (ENSMMDG00005014592)	klc1a (ENSMMDG00005014608)	coa8 (ENSMMDG00005014651)	bag5 (ENSMMDG00005014652)	trmt61a (ENSMMDG00005014654)	ckba (ENSMMDG00005014660) ##22	ENSMMDG00005014671	mark3a (ENSMMDG00005014673)	eif5 (ENSMMDG00005014680)	vps29 (ENSMMDG00005014685)	ENSMMDG00005014686	ENSMMDG00005014688	ENSMMDG00005014691	si:dkey-177p2.6 (ENSMMDG00005014693)	cdca4 (ENSMMDG00005014694)	ahsa1b (ENSMMDG00005014695)	ENSMMDG00005014698	ENSMMDG00005014699	pgrmc2 (ENSMMDG00005014706)	asmt2 (ENSMMDG00005014707)	jade1 (ENSMMDG00005014709)
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.ab ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	251	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 ##22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 ##22	ENSHCOG00000000866	ENSHCOG00000009655 ##22	ENSHCOG00000009672 ##22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)	mtres1 (ENSHCOG00000010074)	bend3 (ENSHCOG00000010084)	pdss2 (ENSHCOG00000010113)	sobpa (ENSHCOG00000010221)	rock2a (ENSHCOG00000010292)	slc66a3 (ENSHCOG00000010335)
Tiger tail seahorse	MODERN SPECIES	251	ENSHCOG00000008528	spdya (ENSHCOG00000008593)	trmt61b (ENSHCOG00000008607)	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 ##22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 ##22	ENSHCOG00000000866	ENSHCOG00000009655 ##22	ENSHCOG00000009672 ##22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)	mtres1 (ENSHCOG00000010074)	bend3 (ENSHCOG00000010084)	pdss2 (ENSHCOG00000010113)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	251	SLC4A1AP (ENSHCOG00000008452)	supt7l (ENSHCOG00000008465)	LRFN2 (ENSHCOG00000008506)	ENSHCOG00000008528	spdya (ENSHCOG00000008593)	trmt61b (ENSHCOG00000008607)	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 ##22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 ##22	ENSHCOG00000000866	ENSHCOG00000009655 ##22	ENSHCOG00000009672 ##22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)
Tiger tail seahorse	MODERN SPECIES	251	trmt61b (ENSHCOG00000008607)	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 ##22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 ##22	ENSHCOG00000000866	ENSHCOG00000009655 ##22	ENSHCOG00000009672 ##22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)	mtres1 (ENSHCOG00000010074)	bend3 (ENSHCOG00000010084)	pdss2 (ENSHCOG00000010113)	sobpa (ENSHCOG00000010221)	rock2a (ENSHCOG00000010292)
Tiger tail seahorse	MODERN SPECIES	101								twist2 (ENSHCOG00000009431)	ENSHCOG00000009467	asb1 (ENSHCOG00000009477)	traf3ip1 (ENSHCOG00000000295)	traf3ip1 (ENSHCOG00000009566)	ADARB1 (ENSHCOG00000009597)	ENSHCOG00000009626	zgc:162780 (ENSHCOG00000009643)	ENSHCOG00000009661 ##22	ube2f (ENSHCOG00000009696)	ramp1 (ENSHCOG00000009720)	ccnt2a (ENSHCOG00000009728)	acmsd (ENSHCOG00000009748)	tmem163a (ENSHCOG00000009774)	ENSHCOG00000009781	RALB (ENSHCOG00000009793)	ENSHCOG00000009874	ENSHCOG00000009898
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000153168.A	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Fugu	DUPLICATION
Fugu	MODERN SPECIES	11	ENSTRUG00000029938	ppp2r5eb (ENSTRUG00000003840)	KCNH5 (ENSTRUG00000004743)	gphb5 (ENSTRUG00000005808)	ENSTRUG00000024118	ENSTRUG00000030125	esr2b (ENSTRUG00000006761)	brf1a (ENSTRUG00000008740)	BTBD6 (ENSTRUG00000008962)	zfyve21 (ENSTRUG00000021037)	ENSTRUG00000026919	klc1a (ENSTRUG00000008089)	coa8 (ENSTRUG00000008026)	bag5 (ENSTRUG00000021724)	trmt61a (ENSTRUG00000007942)	ckba (ENSTRUG00000007663) ##22	ENSTRUG00000030920	ckba (ENSTRUG00000032894) ##22	ENSTRUG00000031698	mark3a (ENSTRUG00000006908)	eif5 (ENSTRUG00000006600)	vps29 (ENSTRUG00000021451)	ENSTRUG00000029891	ENSTRUG00000006434	ENSTRUG00000024591	ENSTRUG00000029360	ENSTRUG00000027669	ENSTRUG00000030284	si:dkey-177p2.6 (ENSTRUG00000020492)	cdca4 (ENSTRUG00000022645)	ahsa1b (ENSTRUG00000022592)
Fugu	MODERN SPECIES	11	KCNH5 (ENSTRUG00000004743)	gphb5 (ENSTRUG00000005808)	ENSTRUG00000024118	ENSTRUG00000030125	esr2b (ENSTRUG00000006761)	brf1a (ENSTRUG00000008740)	BTBD6 (ENSTRUG00000008962)	zfyve21 (ENSTRUG00000021037)	ENSTRUG00000026919	klc1a (ENSTRUG00000008089)	coa8 (ENSTRUG00000008026)	bag5 (ENSTRUG00000021724)	trmt61a (ENSTRUG00000007942)	ckba (ENSTRUG00000007663) ##22	ENSTRUG00000030920	ckba (ENSTRUG00000032894) ##22	ENSTRUG00000031698	mark3a (ENSTRUG00000006908)	eif5 (ENSTRUG00000006600)	vps29 (ENSTRUG00000021451)	ENSTRUG00000029891	ENSTRUG00000006434	ENSTRUG00000024591	ENSTRUG00000029360	ENSTRUG00000027669	ENSTRUG00000030284	si:dkey-177p2.6 (ENSTRUG00000020492)	cdca4 (ENSTRUG00000022645)	ahsa1b (ENSTRUG00000022592)	ENSTRUG00000023154	ENSTRUG00000005612
Tetraodon	MODERN SPECIES	1	ppp2r5eb (ENSTNIG00000012378)	KCNH5 (ENSTNIG00000012379)	gphb5 (ENSTNIG00000012380)	ENSTNIG00000012381	esr2b (ENSTNIG00000012382)	ENSTNIG00000012383	ENSTNIG00000012384	ENSTNIG00000000736	BTBD6 (ENSTNIG00000012385)	ENSTNIG00000012386	zfyve21 (ENSTNIG00000012387)	klc1a (ENSTNIG00000012388)	coa8 (ENSTNIG00000012389)	bag5 (ENSTNIG00000012390)	trmt61a (ENSTNIG00000012391)	ckba (ENSTNIG00000012392) ##22	mark3a (ENSTNIG00000012393)	eif5 (ENSTNIG00000012394)	vps29 (ENSTNIG00000012395)	ENSTNIG00000000514	exoc3l4 (ENSTNIG00000000979)	cdca4 (ENSTNIG00000012396)	ahsa1b (ENSTNIG00000012397)	ENSTNIG00000012398	pgrmc2 (ENSTNIG00000012399)	asmt2 (ENSTNIG00000012400)	jade1 (ENSTNIG00000012401)	nsd2 (ENSTNIG00000012402)	letm1 (ENSTNIG00000012403)	fgfr3 (ENSTNIG00000012404)	foxi2 (ENSTNIG00000003048)
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Ballan wrasse	MODERN SPECIES	340													coa8 (ENSLBEG00000004763)	bag5 (ENSLBEG00000004794)	trmt61a (ENSLBEG00000004835)	ckba (ENSLBEG00000004858) ##22	mark3a (ENSLBEG00000004943)	eif5 (ENSLBEG00000005184)	vps29 (ENSLBEG00000005230)	ENSLBEG00000005258	exoc3l4 (ENSLBEG00000005355)	ENSLBEG00000005429	ENSLBEG00000005452	ENSLBEG00000005491	si:dkey-177p2.6 (ENSLBEG00000005553)	cdca4 (ENSLBEG00000005583)	ahsa1b (ENSLBEG00000005598)	ENSLBEG00000005633	ENSLBEG00000005655	pgrmc2 (ENSLBEG00000005698)	asmt2 (ENSLBEG00000005718)
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234877	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234877	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Gilthead seabream	MODERN SPECIES	7	ENSSAUG00010020475	ENSSAUG00010020464	ahsa1b (ENSSAUG00010020460)	cdca4 (ENSSAUG00010020459)	si:dkey-177p2.6 (ENSSAUG00010020457)	ENSSAUG00010020454	ENSSAUG00010020452	exoc3l4 (ENSSAUG00010020446)	ENSSAUG00010020422	zfyve21 (ENSSAUG00010020416)	klc1a (ENSSAUG00010020199)	coa8 (ENSSAUG00010020197)	bag5 (ENSSAUG00010020196)	trmt61a (ENSSAUG00010020193)	ENSSAUG00010020190	ckba (ENSSAUG00010020187) ##22	mark3a (ENSSAUG00010016257)	eif5 (ENSSAUG00010016191)	vps29 (ENSSAUG00010016123)	ENSSAUG00010016114	KCNH5 (ENSSAUG00010016076)	gphb5 (ENSSAUG00010016071)	ENSSAUG00010016067	esr2b (ENSSAUG00010016030)	ENSSAUG00010014238	ENSSAUG00010014201	ENSSAUG00010014200	ENSSAUG00010014199	ENSSAUG00010014198	ENSSAUG00010014197	ENSSAUG00010014196
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
European seabass	MODERN SPECIES	2	gphb5 (ENSDLAG00005033670)	ENSDLAG00005027738	esr2b (ENSDLAG00005010895)	ENSDLAG00005009198	ENSDLAG00005027269	ENSDLAG00005032036	ENSDLAG00005009101	ENSDLAG00005033978	ENSDLAG00005029934	ZFYVE21 (ENSDLAG00005032163)	ENSDLAG00005005912	klc1a (ENSDLAG00005008793)	bag5 (ENSDLAG00005026601)	ENSDLAG00005034500	trmt61a (ENSDLAG00005008771)	ckba (ENSDLAG00005008698) ##22	ENSDLAG00005008767	mark3a (ENSDLAG00005004906)	EIF5 (ENSDLAG00005004663)	ENSDLAG00005004580	ENSDLAG00005033435	ENSDLAG00005018914	ENSDLAG00005004281	ENSDLAG00005004265	ENSDLAG00005032534	ENSDLAG00005027228	ENSDLAG00005028608	ENSDLAG00005004153	ENSDLAG00005024642	pgrmc2 (ENSDLAG00005033902)	asmt2 (ENSDLAG00005024622)
Large yellow croaker	MODERN SPECIES	495	pacc1 (ENSLCRG00005007836)	nenf (ENSLCRG00005007837)	ezra (ENSLCRG00005007838)	ENSLCRG00005007839	MTARC2 (ENSLCRG00005007840)	HHIPL2 (ENSLCRG00005007842)	wdr32 (ENSLCRG00005007848)	CPXM1 (ENSLCRG00005007857)	ENSLCRG00005007913	ube2d3 (ENSLCRG00005007924)	zfyve21 (ENSLCRG00005008399)	klc1a (ENSLCRG00005008412)	coa8 (ENSLCRG00005008739)	bag5 (ENSLCRG00005008740)	trmt61a (ENSLCRG00005008741)	ckba (ENSLCRG00005008742) ##22	ENSLCRG00005008747	MARK3 (ENSLCRG00005008748)	eif5 (ENSLCRG00005008753)	ENSLCRG00005008756	vps29 (ENSLCRG00005008758)	ENSLCRG00005008763	ENSLCRG00005008764	exoc3l4 (ENSLCRG00005008774)	ENSLCRG00005008782	si:dkey-177p2.6 (ENSLCRG00005008783)	cdca4 (ENSLCRG00005008784)	ahsa1b (ENSLCRG00005008785)	ENSLCRG00005008787	ENSLCRG00005008789	pgrmc2 (ENSLCRG00005008958)
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234877	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247	ENSGT00940000157429.d	ENSGT00950000183167.a.a
Stickleback	MODERN SPECIES	15	emx1 (ENSGACG00000004860)	noto (ENSGACG00000004856)	CDC25B (ENSGACG00000004851)	ap5s1 (ENSGACG00000004849)	ENSGACG00000004847	BTBD6 (ENSGACG00000004835)	brf1a (ENSGACG00000004823)	ENSGACG00000004818	ENSGACG00000004815	ENSGACG00000004813	zfyve21 (ENSGACG00000004809)	klc1a (ENSGACG00000004792)	coa8 (ENSGACG00000004787)	bag5 (ENSGACG00000004786)	trmt61a (ENSGACG00000004779)	ckba (ENSGACG00000004758) ##22	mark3a (ENSGACG00000004742)	eif5 (ENSGACG00000004730)	vps29 (ENSGACG00000004700)	ENSGACG00000004696	ENSGACG00000004692	ENSGACG00000004683	exoc3l4 (ENSGACG00000004676)	ENSGACG00000004674	ENSGACG00000004669	si:dkey-177p2.6 (ENSGACG00000004666)	cdca4 (ENSGACG00000004663)	ahsa1b (ENSGACG00000004625)	ENSGACG00000004609	pgrmc2 (ENSGACG00000004602)	ENSGACG00000004598
Lumpfish	MODERN SPECIES	14	ENSCLMG00005006841	ENSCLMG00005006842	ENSCLMG00005006843	ENSCLMG00005006844	esr2b (ENSCLMG00005006859)	ENSCLMG00005007567	ENSCLMG00005007906	ENSCLMG00005007907	brf1a (ENSCLMG00005007908)	BTBD6 (ENSCLMG00005007909)	zfyve21 (ENSCLMG00005007913)	klc1a (ENSCLMG00005007934)	coa8 (ENSCLMG00005008058)	bag5 (ENSCLMG00005008059)	trmt61a (ENSCLMG00005008060)	ckba (ENSCLMG00005008062) ##22	ENSCLMG00005008177	mark3a (ENSCLMG00005008182)	ENSCLMG00005008892	eif5 (ENSCLMG00005008893)	vps29 (ENSCLMG00005008894)	exoc3l4 (ENSCLMG00005008896)	ENSCLMG00005008897	ENSCLMG00005008898	ENSCLMG00005008916	ENSCLMG00005008921	cdca4 (ENSCLMG00005008922)	ahsa1b (ENSCLMG00005008924)	ENSCLMG00005008928	pgrmc2 (ENSCLMG00005008930)	asmt2 (ENSCLMG00005008932)
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234877	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000160366	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247
Channel bull blenny	MODERN SPECIES	14									brf1a (ENSCGOG00000019939)	BTBD6 (ENSCGOG00000019943)	zfyve21 (ENSCGOG00000019949)	klc1a (ENSCGOG00000020000)	coa8 (ENSCGOG00000020378)	bag5 (ENSCGOG00000020382)	trmt61a (ENSCGOG00000020384)	ckba (ENSCGOG00000020388) ##22	ENSCGOG00000020425	mark3a (ENSCGOG00000020496)	eif5 (ENSCGOG00000021717)	vps29 (ENSCGOG00000021863)	TNFAIP2 (ENSCGOG00000021878)	ENSCGOG00000021883	ENSCGOG00000021885	ENSCGOG00000021887	cdca4 (ENSCGOG00000021889)	ahsa1b (ENSCGOG00000021892)	ENSCGOG00000021917	ENSCGOG00000021921	pgrmc2 (ENSCGOG00000021936)	asmt2 (ENSCGOG00000021940)	jade1 (ENSCGOG00000021944)
Pike perch	MODERN SPECIES	53	alkbh1 (ENSSLUG00000017767)	APOB (ENSSLUG00000017723)	ldah (ENSSLUG00000017698)	gphb5 (ENSSLUG00000017692)	ENSSLUG00000017678	esr2b (ENSSLUG00000017280)	ENSSLUG00000013338	BTBD6 (ENSSLUG00000013209)	brf1a (ENSSLUG00000013202)	zfyve21 (ENSSLUG00000013198)	klc1a (ENSSLUG00000012286)	coa8 (ENSSLUG00000012227)	bag5 (ENSSLUG00000012224)	trmt61a (ENSSLUG00000012219)	ENSSLUG00000012214	ckba (ENSSLUG00000012192) ##22	mark3a (ENSSLUG00000009221)	eif5 (ENSSLUG00000008983)	vps29 (ENSSLUG00000008952)	TNFAIP2 (ENSSLUG00000022625)	exoc3l4 (ENSSLUG00000022607)	ENSSLUG00000022602	ENSSLUG00000022591	si:dkey-177p2.6 (ENSSLUG00000022587)	cdca4 (ENSSLUG00000022582)	ahsa1b (ENSSLUG00000022566)	ENSSLUG00000022557	ENSSLUG00000022516	ENSSLUG00000022505	pgrmc2 (ENSSLUG00000022500)	asmt2 (ENSSLUG00000022489)
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Zig-zag eel	MODERN SPECIES	14	ppp2r5eb (ENSMAMG00000000046)	KCNH5 (ENSMAMG00000000047)	gphb5 (ENSMAMG00000000048)	ENSMAMG00000000049	ENSMAMG00000000050	ENSMAMG00000000052	esr2b (ENSMAMG00000000053)	ENSMAMG00000000054	ENSMAMG00000000056	ENSMAMG00000000057	ENSMAMG00000000058	klc1a (ENSMAMG00000000059)	coa8 (ENSMAMG00000000060)	bag5 (ENSMAMG00000000061)	trmt61a (ENSMAMG00000000062)	ckba (ENSMAMG00000000063) ##22	ENSMAMG00000000064	mark3a (ENSMAMG00000000065)	EIF5 (ENSMAMG00000000066)	ENSMAMG00000000067	ENSMAMG00000000068	ENSMAMG00000000072	ENSMAMG00000025617	ENSMAMG00000000073	ENSMAMG00000000075	ENSMAMG00000000074	ENSMAMG00000000076	ENSMAMG00000000077	ENSMAMG00000000078	ENSMAMG00000026494	ENSMAMG00000000080
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Siamese fighting fish	MODERN SPECIES	12	rbbp4 (ENSBSLG00000024844)	zbtb8os (ENSBSLG00000024811)	khdrbs1a (ENSBSLG00000024799)	tmem39b (ENSBSLG00000024792)	ccdc28b (ENSBSLG00000024789)	ENSBSLG00000024785	KLHL28 (ENSBSLG00000024777)	pank2 (ENSBSLG00000024767)	ENSBSLG00000024759	ENSBSLG00000024753	zfyve21 (ENSBSLG00000024728)	klc1a (ENSBSLG00000024546)	coa8 (ENSBSLG00000024527)	bag5 (ENSBSLG00000024519)	trmt61a (ENSBSLG00000024498)	ckba (ENSBSLG00000024470) ##22	mark3a (ENSBSLG00000023410)	eif5 (ENSBSLG00000023334)	vps29 (ENSBSLG00000023314)	ENSBSLG00000023308	ENSBSLG00000023285	ENSBSLG00000023276	exoc3l4 (ENSBSLG00000023256)	ENSBSLG00000023246	ENSBSLG00000023237	si:dkey-177p2.6 (ENSBSLG00000023234)	cdca4 (ENSBSLG00000023230)	ahsa1b (ENSBSLG00000023153)	ENSBSLG00000023136	LARP1B (ENSBSLG00000022931)	pgrmc2 (ENSBSLG00000022883)
Climbing perch	MODERN SPECIES	13	ppp2r5eb (ENSATEG00000016738)	KCNH5 (ENSATEG00000016794)	gphb5 (ENSATEG00000016850)	ENSATEG00000030096	ENSATEG00000016899	esr2b (ENSATEG00000016954)	ENSATEG00000017008	ENSATEG00000017067	ENSATEG00000017087	ENSATEG00000017116	KLC1 (ENSATEG00000025754)	klc1a (ENSATEG00000017146)	coa8 (ENSATEG00000029055)	bag5 (ENSATEG00000017272)	trmt61a (ENSATEG00000017286)	ckba (ENSATEG00000017305) ##22	ENSATEG00000017323	mark3a (ENSATEG00000017350)	EIF5 (ENSATEG00000017486)	ENSATEG00000017542	ENSATEG00000017616	ENSATEG00000017628	ENSATEG00000017664	ENSATEG00000017681	ENSATEG00000017717	ENSATEG00000017781	ENSATEG00000017795	ENSATEG00000017803	ENSATEG00000028173	ENSATEG00000017849	pgrmc2 (ENSATEG00000017889)
Carangaria	ANCESTRAL SPECIES	10	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b.t	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Turbot	MODERN SPECIES	8	KCNH5 (ENSSMAG00000025884)	gphb5 (ENSSMAG00000028083)	ENSSMAG00000035911	gphb5 (ENSSMAG00000031569)	ENSSMAG00000003011	esr2b (ENSSMAG00000003150)	ENSSMAG00000005467	ENSSMAG00000005498	ENSSMAG00000005510	ENSSMAG00000034872	ENSSMAG00000005543	klc1a (ENSSMAG00000005563)	coa8 (ENSSMAG00000005663)	bag5 (ENSSMAG00000005674)	trmt61a (ENSSMAG00000005682)	ckba (ENSSMAG00000005705) ##22	ENSSMAG00000006025	mark3a (ENSSMAG00000005737)	EIF5 (ENSSMAG00000006036)	ENSSMAG00000006072	ENSSMAG00000006093	ENSSMAG00000024708	ENSSMAG00000006250	ENSSMAG00000034451	ENSSMAG00000006294	ENSSMAG00000006347	pgrmc2 (ENSSMAG00000006418)	asmt2 (ENSSMAG00000006433)	jade1 (ENSSMAG00000006505)	nsd2 (ENSSMAG00000006581)	letm1 (ENSSMAG00000006721)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES		ENSCSEG00000012914	dtd2 (ENSCSEG00000012924)	nubpl (ENSCSEG00000012929)	ARHGAP5 (ENSCSEG00000012946)	AKAP6 (ENSCSEG00000012957)	NPAS3 (ENSCSEG00000012970)	egln3 (ENSCSEG00000012988)	ENSCSEG00000013002	brf1a (ENSCSEG00000013067)	BTBD6 (ENSCSEG00000013091)	zfyve21 (ENSCSEG00000013100)	klc1a (ENSCSEG00000013113)	coa8 (ENSCSEG00000013144)	bag5 (ENSCSEG00000013150)	trmt61a (ENSCSEG00000013165)	ckba (ENSCSEG00000013174) ##22	ENSCSEG00000013191	mark3a (ENSCSEG00000013207)	eif5 (ENSCSEG00000013347)	vps29 (ENSCSEG00000013380)	ENSCSEG00000013393	exoc3l4 (ENSCSEG00000013401)	ENSCSEG00000013406	ENSCSEG00000013411	si:dkey-177p2.6 (ENSCSEG00000013418)	cdca4 (ENSCSEG00000013426)	ahsa1b (ENSCSEG00000013438)	ENSCSEG00000013509	ENSCSEG00000013519	pgrmc2 (ENSCSEG00000013533)	jade1 (ENSCSEG00000013541)
Tongue sole	MODERN SPECIES	2	gxylt2 (ENSCSEG00000007848)	ppp4r2b (ENSCSEG00000007869)	pdzrn3b (ENSCSEG00000007883)	ENSCSEG00000007911	ENSCSEG00000007957	ENSCSEG00000008067	cntn4 (ENSCSEG00000008117)	arl6ip5a (ENSCSEG00000008154)	trnt1 (ENSCSEG00000008157)	ENSCSEG00000008178	ENSCSEG00000008213	mon1a (ENSCSEG00000008235)	grm6b (ENSCSEG00000008243)	ENSCSEG00000008263	SRPK3 (ENSCSEG00000008071)	CKB (ENSCSEG00000008082) ##22	wnt4 (ENSCSEG00000008092)	fbxo2 (ENSCSEG00000008134)	svbp (ENSCSEG00000008141)	ITGA5 (ENSCSEG00000008169)	ENSCSEG00000008387	cdc42 (ENSCSEG00000008405)	snrpe (ENSCSEG00000008431)	sox13 (ENSCSEG00000008443)	CHST15 (ENSCSEG00000008472)	ENSCSEG00000008476	slc41a1 (ENSCSEG00000008494)	ENSCSEG00000008511	etnk2 (ENSCSEG00000008524)	zbtb49 (ENSCSEG00000008540)	lyar (ENSCSEG00000008548)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Barramundi perch	MODERN SPECIES	11								ENSLCAG00010005082	ENSLCAG00010005079	ENSLCAG00010005077	klc1a (ENSLCAG00010005052)	coa8 (ENSLCAG00010005039)	bag5 (ENSLCAG00010005026)	trmt61a (ENSLCAG00010005023)	ENSLCAG00010005020	ckba (ENSLCAG00010004985) ##22	mark3a (ENSLCAG00010004972)
Seriola	ANCESTRAL SPECIES	3	ENSGT00730000111179.b	ENSGT01090000261882	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT01100000263513.a.a.b.b.b.a.a.a.c	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Greater amberjack	MODERN SPECIES	62	gphb5 (ENSSDUG00000005428)	ENSSDUG00000005418	ENSSDUG00000005403	ENSSDUG00000005366	esr2b (ENSSDUG00000005328)	ENSSDUG00000005167	BTBD6 (ENSSDUG00000005135)	brf1a (ENSSDUG00000005014)	ENSSDUG00000004960	zfyve21 (ENSSDUG00000004918)	klc1a (ENSSDUG00000004886)	bag5 (ENSSDUG00000004877)	coa8 (ENSSDUG00000004864)	trmt61a (ENSSDUG00000004840)	ENSSDUG00000004832	ckba (ENSSDUG00000004767) ##22	mark3a (ENSSDUG00000004553)	eif5 (ENSSDUG00000004467)	vps29 (ENSSDUG00000004442)	ENSSDUG00000004423	exoc3l4 (ENSSDUG00000004344)	ENSSDUG00000004323	ENSSDUG00000004293	si:dkey-177p2.6 (ENSSDUG00000004283)	cdca4 (ENSSDUG00000004270)	ahsa1b (ENSSDUG00000004251)	ENSSDUG00000004235	ENSSDUG00000004182	pgrmc2 (ENSSDUG00000004171)	asmt2 (ENSSDUG00000004145)	jade1 (ENSSDUG00000004118)
Yellowtail amberjack	MODERN SPECIES	2905						esr2b (ENSSLDG00000009163)	ENSSLDG00000013869	brf1a (ENSSLDG00000013937)	BTBD6 (ENSSLDG00000013981)	ENSSLDG00000014003	zfyve21 (ENSSLDG00000014052)	klc1a (ENSSLDG00000014091)	coa8 (ENSSLDG00000014128)	bag5 (ENSSLDG00000014145)	trmt61a (ENSSLDG00000014160)	ckba (ENSSLDG00000014183) ##22	ENSSLDG00000014211	mark3a (ENSSLDG00000014225)	eif5 (ENSSLDG00000014272)	vps29 (ENSSLDG00000014317)	ENSSLDG00000014336	exoc3l4 (ENSSLDG00000014442)	ENSSLDG00000014497	ENSSLDG00000014518	si:dkey-177p2.6 (ENSSLDG00000014543)	cdca4 (ENSSLDG00000014555)	ahsa1b (ENSSLDG00000014565)	ENSSLDG00000014592	LARP1B (ENSSLDG00000014613)	pgrmc2 (ENSSLDG00000014643)	asmt2 (ENSSLDG00000014667)
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000157666	ENSGT00940000155671.y.a	ENSGT00730000111137	ENSGT00390000002448	ENSGT00390000008195	ENSGT00940000158622	ENSGT00410000026259	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00390000004172	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Oryzias_b	ANCESTRAL SPECIES	39								ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00390000004172.c	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Indian medaka	MODERN SPECIES			MYT1L (ENSOMEG00000003446)	eipr1 (ENSOMEG00000003467)	trappc12 (ENSOMEG00000003492)	adi1 (ENSOMEG00000003523)	ENSOMEG00000003544	ENSOMEG00000003562	ENSOMEG00000003587	ENSOMEG00000003684	ENSOMEG00000003705	ENSOMEG00000003712	ENSOMEG00000003724	bag5 (ENSOMEG00000003732)	trmt61a (ENSOMEG00000003744)	ENSOMEG00000003756	ckba (ENSOMEG00000003808) ##22	mark3a (ENSOMEG00000003926)	eif5 (ENSOMEG00000003991)	vps29 (ENSOMEG00000004024)	ENSOMEG00000004048	exoc3l4 (ENSOMEG00000004068)	rsph3 (ENSOMEG00000004121)	ENSOMEG00000004131	ENSOMEG00000004144	si:dkey-177p2.6 (ENSOMEG00000004154)	cdca4 (ENSOMEG00000004162)	ahsa1b (ENSOMEG00000004175)	ENSOMEG00000004210	pgrmc2 (ENSOMEG00000004227)	asmt2 (ENSOMEG00000004237)	jade1 (ENSOMEG00000004266)
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000020706	marcksl1b (ENSOJAG00000020743)	hdac1 (ENSOJAG00000020757)	ENSOJAG00000020824	EIF3I (ENSOJAG00000020851)	txlna (ENSOJAG00000020891)	KPNA6 (ENSOJAG00000020946)	ENSOJAG00000020956	brf1a (ENSOJAG00000020971)	BTBD6 (ENSOJAG00000020980)	zfyve21 (ENSOJAG00000020987)	klc1a (ENSOJAG00000021028)	coa8 (ENSOJAG00000021323)	bag5 (ENSOJAG00000021330)	trmt61a (ENSOJAG00000021339)	ckba (ENSOJAG00000021350) ##22	mark3a (ENSOJAG00000021402)	eif5 (ENSOJAG00000021791)	vps29 (ENSOJAG00000021844)	ENSOJAG00000001624	exoc3l4 (ENSOJAG00000001638)	ENSOJAG00000001650	ENSOJAG00000001663	ENSOJAG00000001679	ENSOJAG00000001696	ENSOJAG00000001707	ENSOJAG00000001730	cdca4 (ENSOJAG00000001740)	ahsa1b (ENSOJAG00000001755)	ENSOJAG00000001780	ENSOJAG00000001859
Oryzias_a	ANCESTRAL SPECIES	29	ENSGT00940000157666	ENSGT00940000155671.y.a	ENSGT00730000111137	ENSGT00390000002448	ENSGT00390000008195	ENSGT00940000158622	ENSGT00410000026259	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000155555	ENSGT00940000159639	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00390000004172	ENSGT00940000168728	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Chinese medaka	MODERN SPECIES	185													trmt61a (ENSOSIG00000011466)	ENSOSIG00000011464	mark3a (ENSOSIG00000011462)	ckba (ENSOSIG00000011460) ##22	eif5 (ENSOSIG00000011451)	vps29 (ENSOSIG00000011291)	ENSOSIG00000011274	rsph3 (ENSOSIG00000011271)	ENSOSIG00000011269
Japanese Medaka HdrR	MODERN SPECIES	14	MYT1L (ENSORLG00000017852)	eipr1 (ENSORLG00000017857)	trappc12 (ENSORLG00000017859)	ENSORLG00000025112	adi1 (ENSORLG00000017862)	ENSORLG00000017864	ENSORLG00000027471	ENSORLG00000017877	ENSORLG00000017887	BTBD6 (ENSORLG00000017891)	klc1a (ENSORLG00000017895)	zfyve21 (ENSORLG00000017899)	coa8 (ENSORLG00000017900)	bag5 (ENSORLG00000027890)	trmt61a (ENSORLG00000017903)	ckba (ENSORLG00000017908) ##22	mark3a (ENSORLG00000017921)	ENSORLG00000029319	eif5 (ENSORLG00000017930)	vps29 (ENSORLG00000017935)	ENSORLG00000017937	exoc3l4 (ENSORLG00000027040)	rsph3 (ENSORLG00000017939)	ENSORLG00000024013	ENSORLG00000021797	ENSORLG00000030539	ENSORLG00000027786	si:dkey-177p2.6 (ENSORLG00000021887)	cdca4 (ENSORLG00000017941)	ahsa1b (ENSORLG00000017948)	ENSORLG00000023447
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a.c	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b.a	ENSGT00940000177368	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Aplocheiloidei	ANCESTRAL SPECIES	109	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a.c	ENSGT00940000156540.a.d	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b
Mangrove rivulus	MODERN SPECIES	9	irf2bpl (ENSKMAG00000018382)	ENSKMAG00000018354	timm9 (ENSKMAG00000018340)	arid4a (ENSKMAG00000018271)	psma3 (ENSKMAG00000018247)	snx6 (ENSKMAG00000018216)	cfl2 (ENSKMAG00000018199)	ENSKMAG00000018181	BTBD6 (ENSKMAG00000018157)	ENSKMAG00000018137	zfyve21 (ENSKMAG00000018120)	klc1a (ENSKMAG00000018084)	coa8 (ENSKMAG00000018040)	bag5 (ENSKMAG00000018016)	trmt61a (ENSKMAG00000018005)	ckba (ENSKMAG00000017979) ##22	mark3a (ENSKMAG00000017897)	eif5 (ENSKMAG00000017862)	vps29 (ENSKMAG00000017841)	ENSKMAG00000017818	ARL3 (ENSKMAG00000017791)	wbp1 (ENSKMAG00000017760)	lman2la (ENSKMAG00000017724)	MTFP1 (ENSKMAG00000017702)	MED13L (ENSKMAG00000017631)	ENSKMAG00000017611	tbx3a (ENSKMAG00000017582)	tbx5a (ENSKMAG00000017563)	ddx54 (ENSKMAG00000017520)	rab14 (ENSKMAG00000017487)	ABL1 (ENSKMAG00000017451)
Turquoise killifish	MODERN SPECIES	1625	cln3 (ENSNFUG00015006130)	Nfu_g_1_018518 (ENSNFUG00015006158)	DUS1L (ENSNFUG00015006186)	SLC16A3 (ENSNFUG00015006210)	csnk1db (ENSNFUG00015006224)	ENGASE (ENSNFUG00015006307)	SCPEP1 (ENSNFUG00015006385)	ENSNFUG00015006845	ENSNFUG00015006846	rab11fip4a (ENSNFUG00015006859)	IGF2BP1 (ENSNFUG00015006905)	ENSNFUG00015007324	TNFAIP2 (ENSNFUG00015007326)	exoc3l4 (ENSNFUG00015007334)	TRMT61A (ENSNFUG00015007342)	ckba (ENSNFUG00015007362) ##22	mark3a (ENSNFUG00015007649)	ENSNFUG00015010915	eif5 (ENSNFUG00015010938)	VPS29 (ENSNFUG00015010997)	bag5 (ENSNFUG00015011072)	coa8 (ENSNFUG00015011091)	ENSNFUG00015011106	KLC1A (ENSNFUG00015011178)	ZFYVE21 (ENSNFUG00015011340)	ENSNFUG00015011553	ENSNFUG00015013298	brf1a (ENSNFUG00015013317)	BTBD6A (ENSNFUG00015013348)	DTD2 (ENSNFUG00015013355)	ENSNFUG00015013358
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a	ENSGT00960000187998	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b.a	ENSGT00940000177368	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000166602.A	ENSGT00550000074824	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b.a	ENSGT00940000177368	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Poecilia	ANCESTRAL SPECIES	44									ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b.a	ENSGT00940000177368	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
NAME_6	ANCESTRAL SPECIES	142	ENSGT00390000006916.d.b	ENSGT00550000074824	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b.a	ENSGT00940000177368	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744.d
Sailfin molly	MODERN SPECIES	385												klc1a (ENSPLAG00000013695)	coa8 (ENSPLAG00000013630)	bag5 (ENSPLAG00000013615)	trmt61a (ENSPLAG00000013604)	ckba (ENSPLAG00000013587) ##22	ENSPLAG00000013569	mark3a (ENSPLAG00000013552)	eif5 (ENSPLAG00000013444)	vps29 (ENSPLAG00000013410)	ENSPLAG00000013397	ENSPLAG00000013381	ENSPLAG00000013368
Amazon molly	MODERN SPECIES	614	srp54 (ENSPFOG00000008870)	ENSPFOG00000008813	lrrc57 (ENSPFOG00000008772)	tyro3 (ENSPFOG00000008469)	ENSPFOG00000008431	ENSPFOG00000008067	ENSPFOG00000008032	ENSPFOG00000007931	BTBD6 (ENSPFOG00000007869)	brf1a (ENSPFOG00000007864)	zfyve21 (ENSPFOG00000007862)	klc1a (ENSPFOG00000007320)	coa8 (ENSPFOG00000023033)	bag5 (ENSPFOG00000007281)	trmt61a (ENSPFOG00000007249)	ckba (ENSPFOG00000007129) ##22	MARK3 (ENSPFOG00000022835)
Guppy	MODERN SPECIES	453	ENSPREG00000004534	lrrc57 (ENSPREG00000004552)	tyro3 (ENSPREG00000004587)	ENSPREG00000004628	ENSPREG00000004673	ENSPREG00000004695	ENSPREG00000004729	ENSPREG00000004803	brf1a (ENSPREG00000005076)	BTBD6 (ENSPREG00000005120)	ENSPREG00000005140	klc1a (ENSPREG00000005178)	coa8 (ENSPREG00000005258)	bag5 (ENSPREG00000005296)	trmt61a (ENSPREG00000005313)	ckba (ENSPREG00000005342) ##22	mark3a (ENSPREG00000005436)	ENSPREG00000005677	eif5 (ENSPREG00000005696)	vps29 (ENSPREG00000005729)	ENSPREG00000005761	exoc3l4 (ENSPREG00000005791)	ENSPREG00000005825	ENSPREG00000005850	ahsa1b (ENSPREG00000005888)	ENSPREG00000005914	cdca4 (ENSPREG00000005921)	ENSPREG00000005946	ENSPREG00000005955	ENSPREG00000005980	pgrmc2 (ENSPREG00000006009)
Platyfish	MODERN SPECIES	10	loxl3b (ENSXMAG00000018497)	pank2 (ENSXMAG00000018493)	ENSXMAG00000022985	ENSXMAG00000021583	ENSXMAG00000029472	ENSXMAG00000018489	ENSXMAG00000007459	BTBD6 (ENSXMAG00000027382)	brf1a (ENSXMAG00000018476)	zfyve21 (ENSXMAG00000025110)	klc1a (ENSXMAG00000018455)	coa8 (ENSXMAG00000018452)	bag5 (ENSXMAG00000018450)	trmt61a (ENSXMAG00000018447)	ENSXMAG00000028459	ckba (ENSXMAG00000018437) ##22	ENSXMAG00000023192	ENSXMAG00000029096	tecpr2 (ENSXMAG00000018423)	ankrd9 (ENSXMAG00000018422)	rcor1 (ENSXMAG00000018414)	traf3 (ENSXMAG00000018391)	mipol1 (ENSXMAG00000018388)	ENSXMAG00000018285	ENSXMAG00000022693	sec23a (ENSXMAG00000018352)	srp54 (ENSXMAG00000018315)	ENSXMAG00000027421	lrrc57 (ENSXMAG00000013948)	tyro3 (ENSXMAG00000004939)	ENSXMAG00000027901
NAME_4	ANCESTRAL SPECIES	104	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a	ENSGT00960000187998	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000177368	ENSGT00940000154862.x.b.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Sheepshead minnow	MODERN SPECIES	514	yipf6 (ENSCVAG00000017714)	ENSCVAG00000017735	ENSCVAG00000017768	dtd2 (ENSCVAG00000017787)	snapc1b (ENSCVAG00000017835)	ENSCVAG00000017867	ENSCVAG00000018003	BTBD6 (ENSCVAG00000018074)	ENSCVAG00000018110	zfyve21 (ENSCVAG00000018197)	klc1a (ENSCVAG00000018320)	coa8 (ENSCVAG00000018335)	bag5 (ENSCVAG00000018365)	trmt61a (ENSCVAG00000018399)	ENSCVAG00000018435	ckba (ENSCVAG00000018499) ##22	mark3a (ENSCVAG00000018949)	eif5 (ENSCVAG00000019134)	vps29 (ENSCVAG00000019203)	LGALS8 (ENSCVAG00000019242)	ZDHHC14 (ENSCVAG00000019403)	ENSCVAG00000000796	ARID1B (ENSCVAG00000019547)
Mummichog	MODERN SPECIES	2356			ENSFHEG00000011758	esr2b (ENSFHEG00000011692)	ENSFHEG00000011619	ENSFHEG00000011203	ppp2r5eb (ENSFHEG00000011187)	ENSFHEG00000011104	ENSFHEG00000011095	BTBD6 (ENSFHEG00000011072)	zfyve21 (ENSFHEG00000011042)	klc1a (ENSFHEG00000010970)	coa8 (ENSFHEG00000010832)	bag5 (ENSFHEG00000010822)	trmt61a (ENSFHEG00000010814)	ckb (ENSFHEG00000010790) ##22	ENSFHEG00000010749	mark3a (ENSFHEG00000010724)	eif5 (ENSFHEG00000010524)	vps29 (ENSFHEG00000010482)	ENSFHEG00000010441	exoc3l4 (ENSFHEG00000010420)	ENSFHEG00000010410	ENSFHEG00000010398	si:dkey-177p2.6 (ENSFHEG00000010364)	cdca4 (ENSFHEG00000010349)	ahsa1b (ENSFHEG00000000236)	ENSFHEG00000010280	LARP1B (ENSFHEG00000010264)	pgrmc2 (ENSFHEG00000010241)	asmt2 (ENSFHEG00000010232)
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Cichlidae	ANCESTRAL SPECIES	37	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Nile tilapia	MODERN SPECIES	10	SGPP1 (ENSONIG00000043214)	wdr89 (ENSONIG00000020830)	ppp2r5eb (ENSONIG00000001752)	KCNH5 (ENSONIG00000001748)	gphb5 (ENSONIG00000001746)	ENSONIG00000036811	esr2 (ENSONIG00000001710)	ENSONIG00000001676	brf1a (ENSONIG00000001665)	BTBD6 (ENSONIG00000001672)	zfyve21 (ENSONIG00000012439)	klc1a (ENSONIG00000012429)	coa8 (ENSONIG00000012426)	bag5 (ENSONIG00000012424)	trmt61a (ENSONIG00000012420)	ckba (ENSONIG00000012417) ##22	mark3a (ENSONIG00000012410)	eif5 (ENSONIG00000012407)	vps29 (ENSONIG00000012406)	ENSONIG00000042609	ENSONIG00000012403	ENSONIG00000012400	exoc3l4 (ENSONIG00000012398)	ENSONIG00000034348	ENSONIG00000040212	si:dkey-177p2.6 (ENSONIG00000012393)	cdca4 (ENSONIG00000021035)	ahsa1b (ENSONIG00000012392)	ENSONIG00000030302	ENSONIG00000012386	pgrmc2 (ENSONIG00000033876)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n
Haplochromini	ANCESTRAL SPECIES	42	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Burton s mouthbrooder	MODERN SPECIES	674								BTBD6 (ENSHBUG00000022370)	brf1a (ENSHBUG00000022502)	zfyve21 (ENSHBUG00000000694)	klc1a (ENSHBUG00000022665)	coa8 (ENSHBUG00000022686)	bag5 (ENSHBUG00000022695)	trmt61a (ENSHBUG00000022709)	ENSHBUG00000022714	ckba (ENSHBUG00000022749) ##22	mark3a (ENSHBUG00000023278)	eif5 (ENSHBUG00000001036)	vps29 (ENSHBUG00000023395)	exoc3l4 (ENSHBUG00000023409)
Haplochromini_A	ANCESTRAL SPECIES	44	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Haplochromini_B	ANCESTRAL SPECIES	55	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a	ENSGT01030000234613.b.a.b	ENSGT01030000234613.b.a.a.c.a.j.b	ENSGT01030000234613.b.a.a.c.a.j.a.b	ENSGT01030000234613.b.a.a.c.a.j.a.a	ENSGT00940000168728	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Zebra mbuna	MODERN SPECIES	1101	KCNH5 (ENSMZEG00005001383)	gphb5 (ENSMZEG00005001409)	ENSMZEG00005001424	ENSMZEG00005001446	ENSMZEG00005001544	ENSMZEG00005001558	ENSMZEG00005001573	ENSMZEG00005001584	brf1a (ENSMZEG00005001620)	BTBD6 (ENSMZEG00005001741)	zfyve21 (ENSMZEG00005001775)	klc1a (ENSMZEG00005001810)	coa8 (ENSMZEG00005001873)	bag5 (ENSMZEG00005001887)	trmt61a (ENSMZEG00005001914)	ckba (ENSMZEG00005001937) ##22	mark3a (ENSMZEG00005001972)	eif5 (ENSMZEG00005002102)	vps29 (ENSMZEG00005002143)	ENSMZEG00005002154	ENSMZEG00005002169	ENSMZEG00005002188	ENSMZEG00005002245	exoc3l4 (ENSMZEG00005002293)	ENSMZEG00005002328	ENSMZEG00005002356	ENSMZEG00005002389	ENSMZEG00005002412	ENSMZEG00005002435	ENSMZEG00005002450	si:dkey-177p2.6 (ENSMZEG00005002460)
Eastern happy	MODERN SPECIES	10	ENSACLG00000009148	ENSACLG00000009153	ENSACLG00000009174	esr2b (ENSACLG00000009392)	ENSACLG00000009406	ENSACLG00000009410	ENSACLG00000009419	brf1a (ENSACLG00000010410)	BTBD6 (ENSACLG00000010608)	zfyve21 (ENSACLG00000010624)	klc1a (ENSACLG00000010654)	ENSACLG00000010725	coa8 (ENSACLG00000010731)	bag5 (ENSACLG00000010740)	trmt61a (ENSACLG00000010779)	ckba (ENSACLG00000010809) ##22	mark3a (ENSACLG00000010884)	eif5 (ENSACLG00000011164)	vps29 (ENSACLG00000011186)	ENSACLG00000011198	ENSACLG00000011438	ENSACLG00000011544	ENSACLG00000011547	exoc3l4 (ENSACLG00000011561)	ENSACLG00000011579	ENSACLG00000011602	ENSACLG00000011639	ENSACLG00000011799	ENSACLG00000011815	si:dkey-177p2.6 (ENSACLG00000011833)	cdca4 (ENSACLG00000011837)
P. nyererei	MODERN SPECIES	1450																ENSPNYG00000003034 ##22
Lyretail cichlid	MODERN SPECIES	299	wdr89 (ENSNBRG00000022904)	ppp2r5eb (ENSNBRG00000022915)	KCNH5 (ENSNBRG00000022940)	gphb5 (ENSNBRG00000022958)	ENSNBRG00000022964	ENSNBRG00000022976	esr2b (ENSNBRG00000023185)	ENSNBRG00000023586	brf1a (ENSNBRG00000023643)	BTBD6 (ENSNBRG00000023655)	zfyve21 (ENSNBRG00000023661)	klc1a (ENSNBRG00000023670)	coa8 (ENSNBRG00000023679)	bag5 (ENSNBRG00000023682)	trmt61a (ENSNBRG00000023686)	ckba (ENSNBRG00000023695) ##22	ENSNBRG00000023703	ENSNBRG00000023706	ENSNBRG00000023708	ENSNBRG00000023712	eif5 (ENSNBRG00000023720)	vps29 (ENSNBRG00000023742)	ENSNBRG00000023748	ENSNBRG00000023757	exoc3l4 (ENSNBRG00000023763)	ENSNBRG00000023772	ENSNBRG00000023779	ENSNBRG00000023783	ENSNBRG00000023808	si:dkey-177p2.6 (ENSNBRG00000023817)	cdca4 (ENSNBRG00000023822)
Midas cichlid	MODERN SPECIES	1272							ENSACIG00000023797	ENSACIG00000023800	BTBD6 (ENSACIG00000023803)	ENSACIG00000023806	zfyve21 (ENSACIG00000023807)	klc1a (ENSACIG00000023809)	coa8 (ENSACIG00000023814)	bag5 (ENSACIG00000023816)	trmt61a (ENSACIG00000023818)	ckba (ENSACIG00000023820) ##22	ENSACIG00000023824	mark3a (ENSACIG00000023826)	eif5 (ENSACIG00000023833)	vps29 (ENSACIG00000023840)	ENSACIG00000023845	ENSACIG00000023851	ENSACIG00000023856	ENSACIG00000023870	si:dkey-177p2.6 (ENSACIG00000023872)	cdca4 (ENSACIG00000023875)	ahsa1b (ENSACIG00000023880)	ENSACIG00000023884	ENSACIG00000023890	pgrmc2 (ENSACIG00000023899)	asmt2 (ENSACIG00000023903)
Pomacentridae	ANCESTRAL SPECIES	22	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.c	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Pomacentridae_A	ANCESTRAL SPECIES	31	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.c	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Amphiprion	ANCESTRAL SPECIES	27	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.c	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247
Clown anemonefish	MODERN SPECIES	2552												ENSAOCG00000016946	coa8 (ENSAOCG00000016952)	bag5 (ENSAOCG00000016964)	trmt61a (ENSAOCG00000016986)	ckba (ENSAOCG00000017039) ##22	mark3a (ENSAOCG00000017087)
Orange clownfish	MODERN SPECIES	9	gphb5 (ENSAPEG00000002851)	ENSAPEG00000002883	ENSAPEG00000002922	ENSAPEG00000002946	ENSAPEG00000002963	esr2b (ENSAPEG00000003028)	ENSAPEG00000003105	ENSAPEG00000003239	BTBD6 (ENSAPEG00000003260)	ENSAPEG00000003309	zfyve21 (ENSAPEG00000003335)	klc1a (ENSAPEG00000003369)	coa8 (ENSAPEG00000003403)	bag5 (ENSAPEG00000003511)	trmt61a (ENSAPEG00000003541)	ckba (ENSAPEG00000003565) ##22	mark3a (ENSAPEG00000003620)	eif5 (ENSAPEG00000003714)	vps29 (ENSAPEG00000003774)	TNFAIP2 (ENSAPEG00000003816)	exoc3l4 (ENSAPEG00000003835)	ENSAPEG00000003871	ENSAPEG00000003897	ENSAPEG00000003968	si:dkey-177p2.6 (ENSAPEG00000004001)	cdca4 (ENSAPEG00000004021)	ahsa1b (ENSAPEG00000004042)	ENSAPEG00000004088	ENSAPEG00000004126	pgrmc2 (ENSAPEG00000004176)	asmt2 (ENSAPEG00000004192)
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	3265																CKB (ENSAPOG00000022462) ##22	ENSAPOG00000022476
Spiny chromis	MODERN SPECIES	3750															ENSAPOG00000017837	ckba (ENSAPOG00000000694) ##22
Spiny chromis	MODERN SPECIES	431								BTBD6 (ENSAPOG00000004372)	brf1a (ENSAPOG00000004381)	ENSAPOG00000000104	zfyve21 (ENSAPOG00000004425)	klc1a (ENSAPOG00000004510)	coa8 (ENSAPOG00000004551)	bag5 (ENSAPOG00000000113)	trmt61a (ENSAPOG00000004599)	ckba (ENSAPOG00000004672) ##22
Bicolor damselfish	MODERN SPECIES	355						ENSSPAG00000017094	ENSSPAG00000017104	ENSSPAG00000017116	BTBD6 (ENSSPAG00000017133)	ENSSPAG00000017149	zfyve21 (ENSSPAG00000017163)	klc1a (ENSSPAG00000017184)	coa8 (ENSSPAG00000017240)	bag5 (ENSSPAG00000017253)	trmt61a (ENSSPAG00000017259)	ckba (ENSSPAG00000017281) ##22	mark3a (ENSSPAG00000017350)	eif5 (ENSSPAG00000017515)	vps29 (ENSSPAG00000017555)	ENSSPAG00000017576	exoc3l4 (ENSSPAG00000017613)	ENSSPAG00000017641	ENSSPAG00000017663	ahsa1b (ENSSPAG00000017685)	si:dkey-177p2.6 (ENSSPAG00000017708)	cdca4 (ENSSPAG00000017726)	ENSSPAG00000017738	ENSSPAG00000017772	pgrmc2 (ENSSPAG00000017885)	asmt2 (ENSSPAG00000017896)	jade1 (ENSSPAG00000017957)
Cod	MODERN SPECIES	18	SGPP1 (ENSGMOG00000030796)	ENSGMOG00000028601	wdr89 (ENSGMOG00000022613)	ppp2r5eb (ENSGMOG00000009392)	KCNH5 (ENSGMOG00000027666)	gphb5 (ENSGMOG00000027209)	ENSGMOG00000032367	esr2b (ENSGMOG00000034890)	ENSGMOG00000018260	ENSGMOG00000018967	ENSGMOG00000035589	klc1a (ENSGMOG00000000849)	coa8 (ENSGMOG00000002615)	bag5 (ENSGMOG00000028560)	trmt61a (ENSGMOG00000011395)	ckba (ENSGMOG00000003005) ##22	ENSGMOG00000028956	mark3a (ENSGMOG00000010044)	EIF5 (ENSGMOG00000010039)	ENSGMOG00000010032	ENSGMOG00000036688	ENSGMOG00000034326	ENSGMOG00000023641	ENSGMOG00000017277	ENSGMOG00000028630	ENSGMOG00000008146	ENSGMOG00000034587	tecpr2 (ENSGMOG00000014581)	ankrd9 (ENSGMOG00000030360)	rcor1 (ENSGMOG00000014282)	traf3 (ENSGMOG00000014251)
Protacanthopterygii	ANCESTRAL SPECIES	92	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000238132	ENSGT00940000154862.x.b	ENSGT00390000016478.f	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000155428.b	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a	ENSGT00550000074922	ENSGT00390000010738	ENSGT00940000156598.d
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	631							ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000159639.d	ENSGT00940000155555.c.a	ENSGT00940000158888.n	ENSGT00940000154239.a.d	ENSGT00950000182772.A.a.b.`b.a.i ##22	ENSGT00940000154862.x.b.i	ENSGT00390000016478.f.b	ENSGT01030000234613.b.a.a.c.a.n	ENSGT01030000234613.b.a.b.e	ENSGT00940000164834.a.a
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000156982	ENSGT00940000158220.bb	ENSGT00940000156774.n.a	ENSGT00940000179359.a.b.a.b	ENSGT00940000164866.c	ENSGT01100000263556.a.a.q.d.r.b	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000159639.d	ENSGT00940000155555.c.a	ENSGT00940000158888.n	ENSGT00940000154239.a.d	ENSGT00950000182772.A.a.b.`b.a.i ##22	ENSGT00940000154862.x.b.i	ENSGT00390000016478.f.b	ENSGT01030000234613.b.a.a.c.a.n	ENSGT01030000234613.b.a.b.e	ENSGT00940000164834.a.a	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n.b	ENSGT00940000155428.b.d	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT01000000220171	ENSGT00390000005826.a.b.h.a.b	ENSGT00550000074922.l	ENSGT00390000010738
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000156774.n.a	ENSGT00940000179359.a.b.a.b	ENSGT00940000164866.c	ENSGT00940000165332.B	ENSGT00390000006996	ENSGT01030000234620.a.b.a.j	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000159639.d	ENSGT00940000155555.c.a	ENSGT00940000158888.n	ENSGT00940000154239.a.d	ENSGT00950000182772.A.a.b.`b.a.i ##22	ENSGT00940000154862.x.b.i	ENSGT00390000016478.f.b	ENSGT01030000234613.b.a.a.c.a.n	ENSGT01030000234613.b.a.b.e	ENSGT00940000164834.a.a	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n.b	ENSGT00940000155428.b.d	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT01000000220171	ENSGT00390000005826.a.b.h.a.b	ENSGT00550000074922.l	ENSGT00390000010738
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000025628	wdr89 (ENSOMYG00000053248)	ENSOMYG00000075959	ENSOMYG00000074847	ppp2r5eb (ENSOMYG00000026037)	gphb5 (ENSOMYG00000026346)	ENSOMYG00000027283	ENSOMYG00000030990	ENSOMYG00000031659	ENSOMYG00000069616	ENSOMYG00000020798	ZFYVE21 (ENSOMYG00000031706)	klc1a (ENSOMYG00000032038)	bag5 (ENSOMYG00000032582)	trmt61a (ENSOMYG00000032592)	ckba (ENSOMYG00000032605) ##22	ENSOMYG00000032631	mark3a (ENSOMYG00000032737)	if5 (ENSOMYG00000032972)	ENSOMYG00000033025	ENSOMYG00000033053	ENSOMYG00000048291	ENSOMYG00000033078	ENSOMYG00000033086	ENSOMYG00000051000	ENSOMYG00000055460	PLCB1 (ENSOMYG00000033338)	ENSOMYG00000033526	hao1 (ENSOMYG00000033541)	ENSOMYG00000059970	ENSOMYG00000047855
Oncorhynchus_a	ANCESTRAL SPECIES	177					ENSGT01030000234620.a.b.a.j	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000159639.d	ENSGT00940000155555.c.a	ENSGT00940000158888.n	ENSGT00940000154239.a.d	ENSGT00990000209766.a	ENSGT00950000182772.A.a.b.`b.a.i ##22	ENSGT00940000154862.x.b.i	ENSGT01030000234613.b.a.a.c.a.n	ENSGT01030000234613.b.a.b.e	ENSGT00940000164834.a.a
Coho salmon	MODERN SPECIES	5	ENSOKIG00005020811	ENSOKIG00005020805	ENSOKIG00005020797	ENSOKIG00005020792	ppp2r5eb (ENSOKIG00005020584)	gphb5 (ENSOKIG00005020555)	ESR2 (ENSOKIG00005017780)	ENSOKIG00005017063	BTBD6 (ENSOKIG00005016965)	ENSOKIG00005016908	zfyve21 (ENSOKIG00005016825)	klc1a (ENSOKIG00005016566)	bag5 (ENSOKIG00005016518)	trmt61a (ENSOKIG00005016507)	ENSOKIG00005016505	ckba (ENSOKIG00005016475) ##22	mark3a (ENSOKIG00005016189)	EIF5 (ENSOKIG00005016088)	ENSOKIG00005016057	ENSOKIG00005016037	ENSOKIG00005016015	ENSOKIG00005016011	ENSOKIG00005016003	CDCA4 (ENSOKIG00005015998)	ENSOKIG00005015993	PLCB1 (ENSOKIG00005015567)	ENSOKIG00005015510	hao1 (ENSOKIG00005015450)	ENSOKIG00005015424	napba (ENSOKIG00005015345)	cdc5l (ENSOKIG00005015194)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	42						ENSOTSG00005039745	ENSOTSG00005039744	ENSOTSG00005039729	BTBD6 (ENSOTSG00005039696)	brf1a (ENSOTSG00005039639)	zfyve21 (ENSOTSG00005039627)	klc1a (ENSOTSG00005039266)	bag5 (ENSOTSG00005039229)	trmt61a (ENSOTSG00005039223)	ENSOTSG00005039219	ckba (ENSOTSG00005039214) ##22	mark3a (ENSOTSG00005037697)	ENSOTSG00005037689	ENSOTSG00005037685	ENSOTSG00005037684	CDCA4 (ENSOTSG00005037683)	PLCB1 (ENSOTSG00005037010)	ENSOTSG00005037006	hao1 (ENSOTSG00005037005)	ENSOTSG00005037004	ENSOTSG00005036879	cdc5l (ENSOTSG00005036846)	supt3h (ENSOTSG00005036806)	ENSOTSG00005036780	clic5a (ENSOTSG00005036779)	ENSOTSG00005036776
Chinook salmon	MODERN SPECIES	2934	abcf2a (ENSOTSG00005037441)	faim2a (ENSOTSG00005037419)	afg3l2 (ENSOTSG00005037260)	ppp2r5eb (ENSOTSG00005037148)	gphb5 (ENSOTSG00005037140)	ENSOTSG00005037130	ENSOTSG00005036241	ENSOTSG00005036208	BTBD6 (ENSOTSG00005036207)	brf1a (ENSOTSG00005036171)	zfyve21 (ENSOTSG00005036164)	klc1a (ENSOTSG00005035976)	bag5 (ENSOTSG00005035964)	trmt61a (ENSOTSG00005035961)	ENSOTSG00005035959	ckba (ENSOTSG00005035955) ##22	mark3a (ENSOTSG00005034676)	eif5 (ENSOTSG00005034654)	ENSOTSG00005034647	ENSOTSG00005034646	ENSOTSG00005034644	CDCA4 (ENSOTSG00005034643)	PLCB1 (ENSOTSG00005033596)	ENSOTSG00005033590	hao1 (ENSOTSG00005033582)	ENSOTSG00005033581	napba (ENSOTSG00005033560)	cdc5l (ENSOTSG00005033501)	supt3h (ENSOTSG00005033498)	ENSOTSG00005033473	clic5a (ENSOTSG00005033471)
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000164866.c	ENSGT00940000165332.B	ENSGT00390000006996	ENSGT01030000234620.a.b.a.j	ENSGT00940000156540.a.g	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000159639.d	ENSGT00940000155555.c.a	ENSGT00940000158888.n	ENSGT00940000154239.a.d	ENSGT00990000209766.a	ENSGT00950000182772.A.a.b.`b.a.i ##22	ENSGT00940000154862.x.b.i	ENSGT00390000016478.f.b	ENSGT01030000234613.b.a.a.c.a.n	ENSGT01030000234613.b.a.b.e	ENSGT00940000164834.a.a	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n.b	ENSGT00940000155428.b.d	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT01000000220171	ENSGT00390000005826.a.b.h.a.b	ENSGT00550000074922.l	ENSGT00390000010738
River trout	MODERN SPECIES	17	ENSSTUG00000042880	ENSSTUG00000042872	esr2b (ENSSTUG00000040315)	KCNH5 (ENSSTUG00000040255)	gphb5 (ENSSTUG00000040246)	esr2b (ENSSTUG00000039695)	esr2b (ENSSTUG00000038959)	ENSSTUG00000038217	BTBD6 (ENSSTUG00000038144)	brf1a (ENSSTUG00000037992)	zfyve21 (ENSSTUG00000037880)	klc1a (ENSSTUG00000036630)	bag5 (ENSSTUG00000036583)	trmt61a (ENSSTUG00000036571)	ENSSTUG00000036567	ckba (ENSSTUG00000036465) ##22	mark3a (ENSSTUG00000034966)	eif5 (ENSSTUG00000034892)	ENSSTUG00000034858	ENSSTUG00000034820	ENSSTUG00000034806	ENSSTUG00000034795	ENSSTUG00000034775	CDCA4 (ENSSTUG00000034767)	PLCB1 (ENSSTUG00000034334)	ENSSTUG00000034283	ENSSTUG00000034273	ENSSTUG00000034266	hao1 (ENSSTUG00000034183)	ENSSTUG00000034159	ENSSTUG00000033995
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000086992	wdr89 (ENSSSAG00000102703)	2a5e (ENSSSAG00000044391)	KCNH5 (ENSSSAG00000088169)	gphb5 (ENSSSAG00000053262)	ENSSSAG00000053270	ENSSSAG00000100471	ENSSSAG00000086126	ENSSSAG00000057905	ENSSSAG00000058245	ZFYVE21 (ENSSSAG00000003314)	klc1a (ENSSSAG00000058753)	BAG5 (ENSSSAG00000121302)	trm61 (ENSSSAG00000070099)	MARK3 (ENSSSAG00000070224)	ckba (ENSSSAG00000070110) ##22	EIF5 (ENSSSAG00000002230)	ENSSSAG00000002276	ENSSSAG00000002298	ENSSSAG00000116630	ENSSSAG00000100817	ENSSSAG00000108826	ENSSSAG00000103947	ENSSSAG00000002416	ENSSSAG00000093293	ENSSSAG00000105039	cdc5l (ENSSSAG00000002525)	ENSSSAG00000002562	ENSSSAG00000002568	clic5a (ENSSSAG00000002585)	ENSSSAG00000002612
Huchen	MODERN SPECIES	635									ENSHHUG00000036781	brf1a (ENSHHUG00000037069)	BTBD6 (ENSHHUG00000037096)	zfyve21 (ENSHHUG00000037127)	klc1a (ENSHHUG00000037137)	bag5 (ENSHHUG00000037338)	trmt61a (ENSHHUG00000037342)	ckba (ENSHHUG00000037377) ##22	ENSHHUG00000037475	mark3a (ENSHHUG00000037478)	eif5 (ENSHHUG00000037562)	ENSHHUG00000037599	ENSHHUG00000037627	ENSHHUG00000037639
Salmoninae	ANCESTRAL SPECIES	119	ENSGT00940000177588	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c	ENSGT00940000155555.c.b	ENSGT00390000008212	ENSGT00940000158888.m	ENSGT00940000154239.a.c	ENSGT00950000182772.A.a.b.`b.a.j ##22	ENSGT01030000238132	ENSGT00940000154862.x.b.j	ENSGT00390000016478.f.a	ENSGT01030000234613.b.a.a.c.a.m	ENSGT01030000234613.b.a.b.f	ENSGT00940000168728	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n	ENSGT00940000155428.b.c	ENSGT00390000001607.i.a	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000177588	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c	ENSGT00940000155555.c.b	ENSGT00390000008212	ENSGT00940000158888.m	ENSGT00940000154239.a.c	ENSGT00950000182772.A.a.b.`b.a.j ##22	ENSGT01030000238132	ENSGT00940000154862.x.b.j	ENSGT00390000016478.f.a	ENSGT01030000234613.b.a.a.c.a.m	ENSGT01030000234613.b.a.b.f	ENSGT00940000164834.a.b	ENSGT00940000160366.h	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00390000018691.c	ENSGT00940000159673	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c	ENSGT00940000155555.c.b	ENSGT00390000008212	ENSGT00940000158888.m	ENSGT00950000182772.A.a.b.`b.a.j ##22	ENSGT00940000154862.x.b.j	ENSGT00390000016478.f.a	ENSGT01030000234613.b.a.a.c.a.m	ENSGT01030000234613.b.a.b.f	ENSGT00940000164834.a.b	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k	ENSGT00940000158831.g	ENSGT01070000253766.C.o.b.a
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000031815	ENSOMYG00000031747	ENSOMYG00000031734	ENSOMYG00000031702	erb2 (ENSOMYG00000031569)	ENSOMYG00000030906	ENSOMYG00000030632	ENSOMYG00000063699	ENSOMYG00000066345	ENSOMYG00000049828	ENSOMYG00000030602	klc1a (ENSOMYG00000030541)	ENSOMYG00000069844	COA8 (ENSOMYG00000030327)	bag5 (ENSOMYG00000030316)	kcrt (ENSOMYG00000030175) ##22	MARK3 (ENSOMYG00000029487)	EIF5 (ENSOMYG00000029194)	ENSOMYG00000029063	ENSOMYG00000029028	ENSOMYG00000029016	ENSOMYG00000070183	ENSOMYG00000029014	ENSOMYG00000026567	ENSOMYG00000066175	crls1 (ENSOMYG00000026231)	ENSOMYG00000026137	napba (ENSOMYG00000025353)	ENSOMYG00000025128	ENSOMYG00000023442	ENSOMYG00000073610
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00390000018691.c	ENSGT00940000159673	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c	ENSGT00940000155555.c.b	ENSGT00390000008212	ENSGT00940000158888.m	ENSGT00950000182772.A.a.b.`b.a.j ##22	ENSGT00940000154862.x.b.j	ENSGT00390000016478.f.a	ENSGT01030000234613.b.a.a.c.a.m	ENSGT01030000234613.b.a.b.f	ENSGT00940000164834.a.b	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k	ENSGT00940000158831.g	ENSGT01070000253766.C.o.b.a
Coho salmon	MODERN SPECIES	27	ppp2r5eb (ENSOKIG00005039119)	KCNH5 (ENSOKIG00005038916)	GPHB5 (ENSOKIG00005038895)	ENSOKIG00005038862	ENSOKIG00005038739	esr2b (ENSOKIG00005038442)	ENSOKIG00005037377	ENSOKIG00005037242	ENSOKIG00005037217	ENSOKIG00005037202	ZFYVE21 (ENSOKIG00005037153)	klc1a (ENSOKIG00005037085)	coa8 (ENSOKIG00005037038)	bag5 (ENSOKIG00005037016)	ENSOKIG00005037001	CKB (ENSOKIG00005036610) ##22	mark3a (ENSOKIG00005033781)	EIF5 (ENSOKIG00005033507)	ENSOKIG00005033440	ENSOKIG00005033420	ENSOKIG00005033408	ENSOKIG00005033401	CDCA4 (ENSOKIG00005033374)	ENSOKIG00005028487	crls1 (ENSOKIG00005028204)	MCM8 (ENSOKIG00005027665)	napba (ENSOKIG00005027509)	ENSOKIG00005027475	CDC5L (ENSOKIG00005027411)	enpp4 (ENSOKIG00005027390)	XKR6 (ENSOKIG00005027378)
Chinook salmon	MODERN SPECIES	2	snapc1b (ENSOTSG00005028543)	SYT16 (ENSOTSG00005028541)	SGPP1 (ENSOTSG00005028538)	ppp2r5eb (ENSOTSG00005026521)	KCNH5 (ENSOTSG00005026508)	GPHB5 (ENSOTSG00005026507)	ENSOTSG00005026505	esr2b (ENSOTSG00005026502)	ENSOTSG00005025807	BTBD6 (ENSOTSG00005025749)	ENSOTSG00005025744	zfyve21 (ENSOTSG00005025736)	klc1a (ENSOTSG00005025724)	coa8 (ENSOTSG00005025713)	bag5 (ENSOTSG00005025709)	CKB (ENSOTSG00005025706) ##22	MARK3 (ENSOTSG00005021731)	eif5 (ENSOTSG00005021643)	ENSOTSG00005021637	ENSOTSG00005021634	ENSOTSG00005021629	CDCA4 (ENSOTSG00005021625)	ENSOTSG00005021621	crls1 (ENSOTSG00005021620)	MCM8 (ENSOTSG00005021354)	napba (ENSOTSG00005021342)	ENSOTSG00005021341	cdc5l (ENSOTSG00005019834)	enpp4 (ENSOTSG00005019829)	ENSOTSG00005019766	kiaa1109 (ENSOTSG00005019724)
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000177588	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.h	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000159639.c	ENSGT00940000155555.c.b	ENSGT00390000008212	ENSGT00940000158888.m	ENSGT00940000154239.a.c	ENSGT00950000182772.A.a.b.`b.a.j ##22	ENSGT01030000238132	ENSGT00940000154862.x.b.j	ENSGT00390000016478.f.a	ENSGT01030000234613.b.a.a.c.a.m	ENSGT01030000234613.b.a.b.f	ENSGT00940000164834.a.b	ENSGT00940000160366.h	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.i.a	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k
Atlantic salmon	MODERN SPECIES		snapc1b (ENSSSAG00000001552)	SYT16 (ENSSSAG00000001557)	ENSSSAG00000105087	ppp2r5eb (ENSSSAG00000001667)	ENSSSAG00000106684	ENSSSAG00000002567	ENSSSAG00000100502	esr2b (ENSSSAG00000002641)	ENSSSAG00000121425	ENSSSAG00000003295	ENSSSAG00000093721	ZFYVE21 (ENSSSAG00000058274)	KLC1 (ENSSSAG00000003364)	bag5 (ENSSSAG00000003451)	ENSSSAG00000111799	ckb (ENSSSAG00000003466) ##22	MARK3 (ENSSSAG00000003552)	ENSSSAG00000003482	EIF5 (ENSSSAG00000004307)	tnfaip2b (ENSSSAG00000004364)	exoc3l4 (ENSSSAG00000004378)	LBH (ENSSSAG00000004392)	ENSSSAG00000101310	ENSSSAG00000103441	ENSSSAG00000004570	ENSSSAG00000005519	ENSSSAG00000113076	ENSSSAG00000005749	ENSSSAG00000005830	enpp4 (ENSSSAG00000006881)	ENSSSAG00000006892
River trout	MODERN SPECIES	26	KCNH5 (ENSSTUG00000045684)	GPHB5 (ENSSTUG00000045670)	ENSSTUG00000045655	ENSSTUG00000045598	esr2b (ENSSTUG00000045577)	ENSSTUG00000045109	ENSSTUG00000045078	BTBD6 (ENSSTUG00000045054)	brf1a (ENSSTUG00000044935)	ENSSTUG00000044923	klc1a (ENSSTUG00000043936)	coa8 (ENSSTUG00000043911)	bag5 (ENSSTUG00000043899)	trmt61a (ENSSTUG00000043870)	ENSSTUG00000043864	ckba (ENSSTUG00000043847) ##22	mark3a (ENSSTUG00000042605)	eif5 (ENSSTUG00000042464)	ENSSTUG00000042366	ENSSTUG00000042307	ENSSTUG00000042292	ENSSTUG00000042277	CDCA4 (ENSSTUG00000042266)	ENSSTUG00000040119	ENSSTUG00000040046	crls1 (ENSSTUG00000040021)	MCM8 (ENSSTUG00000039950)	napba (ENSSTUG00000039410)	ENSSTUG00000039394	ENSSTUG00000039392	cdc5l (ENSSTUG00000038926)
Huchen	MODERN SPECIES	77	ENSHHUG00000045203	ENSHHUG00000045193	ENSHHUG00000045180	esr2b (ENSHHUG00000045048)	ENSHHUG00000044687	ENSHHUG00000044686	BTBD6 (ENSHHUG00000044679)	ENSHHUG00000044675	ENSHHUG00000044674	zfyve21 (ENSHHUG00000044659)	klc1a (ENSHHUG00000044404)	coa8 (ENSHHUG00000044392)	bag5 (ENSHHUG00000044390)	trmt61a (ENSHHUG00000044382)	ENSHHUG00000044379	ckba (ENSHHUG00000043873) ##22	mark3a (ENSHHUG00000043683)	eif5 (ENSHHUG00000043661)	ENSHHUG00000043603	ENSHHUG00000043594	ENSHHUG00000043591	ENSHHUG00000043587	CDCA4 (ENSHHUG00000043584)	ENSHHUG00000043279	crls1 (ENSHHUG00000043273)	MCM8 (ENSHHUG00000043197)	napba (ENSHHUG00000043129)	ENSHHUG00000043125	cdc5l (ENSHHUG00000043011)	CLIC5 (ENSHHUG00000043007)	enpp4 (ENSHHUG00000043005)
Northern pike	MODERN SPECIES	14	wdr89 (ENSELUG00000011779)	ppp2r5eb (ENSELUG00000011926)	KCNH5 (ENSELUG00000011998)	gphb5 (ENSELUG00000012016)	ENSELUG00000012111	esr2b (ENSELUG00000012140)	ENSELUG00000012210	BTBD6 (ENSELUG00000012265)	brf1a (ENSELUG00000012342)	zfyve21 (ENSELUG00000012406)	klc1a (ENSELUG00000012511)	apopt1 (ENSELUG00000012568)	bag5 (ENSELUG00000024943)	ENSELUG00000030755	trmt61a (ENSELUG00000012611)	ckb (ENSELUG00000000464) ##22	ENSELUG00000032851	mark3a (ENSELUG00000012906)	eif5 (ENSELUG00000013021)	ENSELUG00000013091	exoc3l4 (ENSELUG00000013122)	ENSELUG00000034002	CDCA4 (ENSELUG00000013163)	PLCB1 (ENSELUG00000013241)	tmx4 (ENSELUG00000013273)	hao1 (ENSELUG00000013296)	crls1 (ENSELUG00000013306)	MCM8 (ENSELUG00000013379)	napba (ENSELUG00000013424)	cdc5l (ENSELUG00000013492)	supt3h (ENSELUG00000013548)
Otomorpha	ANCESTRAL SPECIES	242	ENSGT00940000154656.ob.a.q	ENSGT00940000176966	ENSGT00940000154656.ob.a.r	ENSGT00940000156116.A	ENSGT00940000164854.b.e	ENSGT00960000187998	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639	ENSGT00940000155555	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366
Otophysi	ANCESTRAL SPECIES	12				ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b.g	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb	ENSGT00940000165916.e.b	ENSGT00390000018691.d
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00940000154935.d	ENSGT00940000155303.l	ENSGT00940000156914.o.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b.g	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	22	si:dkey-33c12.4 (ENSIPUG00000005998)	ENSIPUG00000005947	zgc:123321 (ENSIPUG00000005913)	ENSIPUG00000005905	pomk (ENSIPUG00000005893)	dcaf10 (ENSIPUG00000005878)	ENSIPUG00000005860	cpxm1 (ENSIPUG00000005829)	ENSIPUG00000005804	SEMA4G (ENSIPUG00000005749)	lzts2 (ENSIPUG00000005737)	ENSIPUG00000005731	pdzd7a (ENSIPUG00000005667)	SFXN1 (ENSIPUG00000005638)	selenou1a (ENSIPUG00000005592)	CKB (ENSIPUG00000005495) ##22	mat1a (ENSIPUG00000005424)	zgc:154058 (ENSIPUG00000005399)	ENSIPUG00000005372	ENSIPUG00000005349	ENSIPUG00000005336	STOX1 (ENSIPUG00000005320)	ccar1 (ENSIPUG00000005123)	si:dkey-228d14.5 (ENSIPUG00000005094)	eif4e1c (ENSIPUG00000005027)	tet1 (ENSIPUG00000005004)	Slc25a16 (ENSIPUG00000004964)	ALOX5 (ENSIPUG00000004930)	Fam21 (ENSIPUG00000004769)	zfand4 (ENSIPUG00000004728)	marchf8 (ENSIPUG00000004619)
Channel catfish	MODERN SPECIES	263																CKB (ENSIPUG00000011280) ##22
Channel catfish	MODERN SPECIES	22	ikzf1 (ENSIPUG00000003841)	c3h7orf72 (ENSIPUG00000003880)	vwc2 (ENSIPUG00000003893)	ENSIPUG00000003914	zgc:110045 (ENSIPUG00000003932)	mocos (ENSIPUG00000003946)	anxa11a (ENSIPUG00000003965)	dlg5 (ENSIPUG00000004020)	kcnma1a (ENSIPUG00000004383)	CJ011 (ENSIPUG00000004493)	znf503 (ENSIPUG00000004515)	comtd1 (ENSIPUG00000004535)	ifit8 (ENSIPUG00000004546)	ENSIPUG00000004549	vdac2 (ENSIPUG00000004553)	ckba (ENSIPUG00000004569) ##22	ENSIPUG00000004596	ENSIPUG00000004606	marchf8 (ENSIPUG00000004619)	zfand4 (ENSIPUG00000004728)	Fam21 (ENSIPUG00000004769)	ALOX5 (ENSIPUG00000004930)	Slc25a16 (ENSIPUG00000004964)	tet1 (ENSIPUG00000005004)	eif4e1c (ENSIPUG00000005027)	si:dkey-228d14.5 (ENSIPUG00000005094)	ccar1 (ENSIPUG00000005123)	STOX1 (ENSIPUG00000005320)	ENSIPUG00000005336	ENSIPUG00000005349	ENSIPUG00000005372
Channel catfish	MODERN SPECIES	22	kcnma1a (ENSIPUG00000004383)	dlg5 (ENSIPUG00000004020)	anxa11a (ENSIPUG00000003965)	mocos (ENSIPUG00000003946)	zgc:110045 (ENSIPUG00000003932)	ENSIPUG00000003914	vwc2 (ENSIPUG00000003893)	c3h7orf72 (ENSIPUG00000003880)	ikzf1 (ENSIPUG00000003841)	fignl1 (ENSIPUG00000003825)	ttl (ENSIPUG00000003796)	klc1 (ENSIPUG00000003683)	apopt1 (ENSIPUG00000003665)	bag5 (ENSIPUG00000003641)	trmt61a (ENSIPUG00000003613)	ckba (ENSIPUG00000003503) ##22	mark3 (ENSIPUG00000003398)	eif5 (ENSIPUG00000003331)	ENSIPUG00000003305	exoc3l4 (ENSIPUG00000003285)	ENSIPUG00000003257	ENSIPUG00000003245	AIFM2 (ENSIPUG00000003201)	ninl (ENSIPUG00000003152)	gins1 (ENSIPUG00000003089)	PNLIPRP2 (ENSIPUG00000002993)	pitx3 (ENSIPUG00000002981)	gbf1 (ENSIPUG00000002803)	H2afy2 (ENSIPUG00000002757)	ENSIPUG00000002709	ENSIPUG00000002680
Channel catfish	MODERN SPECIES	22	slc25a28 (ENSIPUG00000000758)	nkx3.3 (ENSIPUG00000000771)	Nkx2-3 (ENSIPUG00000000774)	got1 (ENSIPUG00000000781)	cnnm1 (ENSIPUG00000000793)	hpse2 (ENSIPUG00000000802)	hps1 (ENSIPUG00000000808)	st3gal7 (ENSIPUG00000000817)	ENSIPUG00000000831	morn4 (ENSIPUG00000000904)	nkx1.2la (ENSIPUG00000000917)	PRKG1 (ENSIPUG00000000923)	dkk1a (ENSIPUG00000001048)	pcdh15a (ENSIPUG00000001088)	ENSIPUG00000002311	ckba (ENSIPUG00000002321) ##22	ENSIPUG00000002368	ENSIPUG00000002379	Cisd1 (ENSIPUG00000002387)	DHX57 (ENSIPUG00000002412)	galm (ENSIPUG00000002550)	atl2 (ENSIPUG00000002603)	ENSIPUG00000002624	HELLS (ENSIPUG00000002634)	ENSIPUG00000002680	ENSIPUG00000002709	H2afy2 (ENSIPUG00000002757)	gbf1 (ENSIPUG00000002803)	pitx3 (ENSIPUG00000002981)	PNLIPRP2 (ENSIPUG00000002993)	gins1 (ENSIPUG00000003089)
Channel catfish	MODERN SPECIES	28	CFL2 (ENSIPUG00000001293)	SNX6 (ENSIPUG00000001204)	eapp (ENSIPUG00000001140)	sptssa (ENSIPUG00000001121)	egln3 (ENSIPUG00000001099)	npas3 (ENSIPUG00000001060)	AKAP6 (ENSIPUG00000001037)	zranb1b (ENSIPUG00000000984)	Psmc1 (ENSIPUG00000000956)	ENSIPUG00000000939	ENSIPUG00000000937	ENSIPUG00000000924	ENSIPUG00000000912	tonsl (ENSIPUG00000000901)	edrf1 (ENSIPUG00000000846)	CKB (ENSIPUG00000000834) ##22	tex36 (ENSIPUG00000000825)	VCPKMT (ENSIPUG00000000816)	ENSIPUG00000000807	aspg (ENSIPUG00000000734)	KIF26A (ENSIPUG00000000684)	ENSIPUG00000000674	tmem179 (ENSIPUG00000000666)	ENSIPUG00000000642	ubr1 (ENSIPUG00000000615)	ERH (ENSIPUG00000000598)	ENSIPUG00000000584	ENSIPUG00000000575	exd2 (ENSIPUG00000000560)	numb (ENSIPUG00000000525)	galnt16 (ENSIPUG00000000504)
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00940000154935.d	ENSGT00940000155303.l	ENSGT00940000156914.o.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b.g	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v	ENSGT00940000158120
Characoidei	ANCESTRAL SPECIES	5	ENSGT00940000154935.d	ENSGT00940000155303.l	ENSGT00940000156914.o.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b.g	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000156837	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v
Red-bellied piranha	MODERN SPECIES	10	ENSPNAG00000027955	dlg5a (ENSPNAG00000028221)	anxa11a (ENSPNAG00000028657)	MOCOS (ENSPNAG00000028740)	zgc:110045 (ENSPNAG00000004501)	ENSPNAG00000006838	vwc2 (ENSPNAG00000029192)	SPATA48 (ENSPNAG00000004535)	ikzf1 (ENSPNAG00000004566)	fignl1 (ENSPNAG00000029349)	ttl (ENSPNAG00000005397)	klc1a (ENSPNAG00000004610)	coa8 (ENSPNAG00000004611)	bag5 (ENSPNAG00000029483)	trmt61a (ENSPNAG00000029500)	ckba (ENSPNAG00000004654) ##22	mark3a (ENSPNAG00000029687)	EIF5 (ENSPNAG00000029712)	ENSPNAG00000029768	exoc3l4 (ENSPNAG00000004678)	ENSPNAG00000029805	ENSPNAG00000029810	ENSPNAG00000029823	ENSPNAG00000029830	ENSPNAG00000029833	ENSPNAG00000004680	ENSPNAG00000029857	AIFM2 (ENSPNAG00000029863)	ninl (ENSPNAG00000029902)	gins1 (ENSPNAG00000029876)	PNLIPRP2 (ENSPNAG00000029920)
Mexicana tetra	MODERN SPECIES	17	kcnma1a (ENSAMXG00000001588)	ENSAMXG00000035070	dlg5a (ENSAMXG00000001625)	anxa11a (ENSAMXG00000033610)	MOCOS (ENSAMXG00000001739)	ENSAMXG00000001760	vwc2 (ENSAMXG00000033541)	SPATA48 (ENSAMXG00000001803)	ikzf1 (ENSAMXG00000001814)	fignl1 (ENSAMXG00000026057)	ttl (ENSAMXG00000001831)	klc1a (ENSAMXG00000035475)	coa8 (ENSAMXG00000031206)	bag5 (ENSAMXG00000001856)	trmt61a (ENSAMXG00000037952)	ckba (ENSAMXG00000001864) ##22	mark3a (ENSAMXG00000001870)	EIF5 (ENSAMXG00000001895)	ENSAMXG00000001905	exoc3l4 (ENSAMXG00000001925)	ENSAMXG00000033759	ENSAMXG00000038628	ENSAMXG00000035908	ENSAMXG00000029877	ENSAMXG00000034311	AIFM2 (ENSAMXG00000001966)	ninl (ENSAMXG00000001987)	gins1 (ENSAMXG00000041281)	PNLIPRP2 (ENSAMXG00000002005)	pitx3 (ENSAMXG00000029072)	GBF1 (ENSAMXG00000002009)
Electric eel	MODERN SPECIES	1	lrmda (ENSEEEG00000008116)	kcnma1a (ENSEEEG00000006264)	dlg5a (ENSEEEG00000006191)	ENSEEEG00000005282	MOCOS (ENSEEEG00000005202)	ENSEEEG00000005191	vwc2 (ENSEEEG00000005186)	ikzf1 (ENSEEEG00000005094)	fignl1 (ENSEEEG00000005088)	ttl (ENSEEEG00000005087)	klc1a (ENSEEEG00000004989)	coa8 (ENSEEEG00000004958)	bag5 (ENSEEEG00000004951)	trmt61a (ENSEEEG00000004950)	ENSEEEG00000004949	ckba (ENSEEEG00000004850) ##22	mark3a (ENSEEEG00000004785)	EIF5 (ENSEEEG00000004780)	ENSEEEG00000004775	ENSEEEG00000004773	ENSEEEG00000004768	AIFM2 (ENSEEEG00000004763)	ninl (ENSEEEG00000004759)	gins1 (ENSEEEG00000004750)	PNLIPRP2 (ENSEEEG00000004628)	pitx3 (ENSEEEG00000004623)	ENSEEEG00000004622	macroh2a2 (ENSEEEG00000004618)	ENSEEEG00000004611	hells (ENSEEEG00000004554)	atl2 (ENSEEEG00000003481)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555.b	ENSGT00940000169764	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b.g	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968.c	ENSGT00940000154518.b	ENSGT00940000156925.v	ENSGT00940000158120	ENSGT00940000154865
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	96	ENSGT00940000153289.a.a.a.a	ENSGT00940000154935.d.d	ENSGT00940000155303.l.b	ENSGT00940000156914.o.b	ENSGT00940000157051.d	ENSGT00940000162768.A.b	ENSGT00720000108792.A.e	ENSGT00940000175717	ENSGT00940000156782.c.e	ENSGT00940000161552.c	ENSGT00940000161907.c	ENSGT00940000155555.b.a	ENSGT00390000008212.j	ENSGT00940000158888.p	ENSGT00940000154239.a.f	ENSGT00950000182772.A.a.b.`b.a.m ##22	ENSGT01030000234848	ENSGT00940000154862.x.b.k	ENSGT00390000016478.c.a.b
Goldfish	MODERN SPECIES	4	kcnma1a (ENSCARG00000048423)	dlg5a (ENSCARG00000050588)	anxa11a (ENSCARG00000051271)	ENSCARG00000053760	vwc2 (ENSCARG00000053870)	ENSCARG00000053879	ENSCARG00000053884	ENSCARG00000053892	ikzf1 (ENSCARG00000053923)	fignl1 (ENSCARG00000054206)	ttl (ENSCARG00000054215)	klc1a (ENSCARG00000054267)	coa8 (ENSCARG00000054688)	bag5 (ENSCARG00000054747)	trmt61a (ENSCARG00000054803)	ckba (ENSCARG00000054814) ##22	ENSCARG00000054937	mark3a (ENSCARG00000054962)	EIF5 (ENSCARG00000055286)	ENSCARG00000055390	exoc3l4 (ENSCARG00000055416)	ENSCARG00000055436	ENSCARG00000055448	pitx3 (ENSCARG00000055479)	GBF1 (ENSCARG00000055550)	macroh2a2 (ENSCARG00000055870)	ENSCARG00000055916	hells (ENSCARG00000056179)	atl2 (ENSCARG00000056846)	DHX57 (ENSCARG00000062466)	epas1b (ENSCARG00000062718)
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00940000156914.o.b	ENSGT00940000157051.d	ENSGT00940000162768.A.b	ENSGT00720000108792.A.e	ENSGT00940000175717	ENSGT00940000156782.c.e	ENSGT00940000161552.c	ENSGT00940000161907.c	ENSGT00940000155555.b.a	ENSGT00390000008212.j	ENSGT00940000158888.p	ENSGT00940000154239.a.e.b	ENSGT00950000182772.A.a.b.`b.a.n ##22	ENSGT01030000234848	ENSGT00940000154239.a.f	ENSGT00950000182772.A.a.b.`b.a.m ##22	ENSGT00940000154862.x.b.k	ENSGT00390000016478.c.a.b	ENSGT01030000234613.b.a.a.c.a.b	ENSGT01030000234613.b.a.b.g.a	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366.i	ENSGT00390000004582.e	ENSGT00660000095541.a.a.i	ENSGT00390000013968.c	ENSGT00940000154518.b.j	ENSGT00940000156925.v.a	ENSGT00940000158120.g	ENSGT00940000154865.kc.b
Common carp reference	MODERN SPECIES	18	ENSCCRG00000081045	kcnma1a (ENSCCRG00000054915)	dlg5a (ENSCCRG00000028965)	anxa11a (ENSCCRG00000022115)	ENSCCRG00000077151	ENSCCRG00000040605	vwc2 (ENSCCRG00000027662)	ENSCCRG00000054106	ikzf1 (ENSCCRG00000080442)	fignl1 (ENSCCRG00000063996)	ttl (ENSCCRG00000023529)	klc1a (ENSCCRG00000061513)	coa8 (ENSCCRG00000020794)	bag5 (ENSCCRG00000031680)	trmt61a (ENSCCRG00000055745)	ckba (ENSCCRG00000018553) ##22	mark3a (ENSCCRG00000074047)	EIF5 (ENSCCRG00000018349)	ENSCCRG00000018498	ENSCCRG00000018934	ENSCCRG00000041921	ENSCCRG00000078542	pitx3 (ENSCCRG00000038544)	ENSCCRG00000038554	macroh2a2 (ENSCCRG00000018156)	ENSCCRG00000073729	ENSCCRG00000056281	hells (ENSCCRG00000027223)	atl2 (ENSCCRG00000060545)	ENSCCRG00000024186	epas1b (ENSCCRG00000024181)
Golden-line barbel	MODERN SPECIES	44	lrmda (ENSSGRG00000045813)	kcnma1a (ENSSGRG00000043159)	dlg5a (ENSSGRG00000043037)	ENSSGRG00000041822	MOCOS (ENSSGRG00000041645)	zgc:110045 (ENSSGRG00000041643)	vwc2 (ENSSGRG00000041642)	ikzf1 (ENSSGRG00000041641)	fignl1 (ENSSGRG00000041640)	ttl (ENSSGRG00000041639)	klc1a (ENSSGRG00000041636)	coa8 (ENSSGRG00000041635)	bag5 (ENSSGRG00000041632)	trmt61a (ENSSGRG00000041629)	ENSSGRG00000041627	ckba (ENSSGRG00000040901) ##22	mark3a (ENSSGRG00000040691)	ENSSGRG00000040476	ENSSGRG00000040471	exoc3l4 (ENSSGRG00000040470)	ENSSGRG00000040463	ENSSGRG00000040460	AIFM2 (ENSSGRG00000040455)	ninl (ENSSGRG00000040452)	ENSSGRG00000040449	pitx3 (ENSSGRG00000040436)	ENSSGRG00000040434
Cyprininae	ANCESTRAL SPECIES	87	ENSGT00940000157051.c	ENSGT00940000162185	ENSGT00720000108792.A.f	ENSGT00940000156782.c.f	ENSGT00940000161552.d	ENSGT00940000161907.d	ENSGT00940000155555.b.b	ENSGT00940000169764	ENSGT00390000008212.i	ENSGT00940000158888.o	ENSGT00940000154239.a.e.a	ENSGT01030000234613.b.a.a.c.a.b	ENSGT01030000234613.b.a.b.g.a	ENSGT01030000234613.b.a.b.h	ENSGT00940000154239.a.e.b	ENSGT00950000182772.A.a.b.`b.a.n ##22	ENSGT01100000266056	ENSGT00940000154862.x.b.l	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a.a	ENSGT01030000234613.b.a.b.g.b	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366.i	ENSGT00390000004582.e	ENSGT00660000095541.a.a.i	ENSGT00390000013968.c	ENSGT00940000154518.b.j	ENSGT00940000156925.v.a	ENSGT00940000158120.g	ENSGT00940000154865.kc.b
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00940000153289.a.a.a.a	ENSGT00940000154935.d.d	ENSGT00940000155303.l.b	ENSGT00940000156914.o.b	ENSGT00940000157051.d	ENSGT00940000162768.A.b	ENSGT00720000108792.A.e	ENSGT00940000175717	ENSGT00940000156782.c.e	ENSGT00940000161552.c	ENSGT00940000161907.c	ENSGT00940000155555.b.a	ENSGT00390000008212.j	ENSGT00940000158888.p	ENSGT00940000154239.a.e.b	ENSGT00950000182772.A.a.b.`b.a.n ##22	ENSGT01030000234848	ENSGT00940000154239.a.f	ENSGT00950000182772.A.a.b.`b.a.m ##22	ENSGT00940000154862.x.b.k	ENSGT00390000016478.c.a.b	ENSGT01030000234613.b.a.a.c.a.b	ENSGT01030000234613.b.a.b.g.a	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366.i	ENSGT00390000004582.e	ENSGT00660000095541.a.a.i	ENSGT00390000013968.c	ENSGT00940000154518.b.j
Golden-line barbel	MODERN SPECIES	116	ENSSGRG00000012099	znf503 (ENSSGRG00000012101)	lrmda (ENSSGRG00000012105)	kcnma1a (ENSSGRG00000012273)	dlg5a (ENSSGRG00000019266)	anxa11a (ENSSGRG00000019872)	ENSSGRG00000019909	ENSSGRG00000019910	vwc2 (ENSSGRG00000019911)	ENSSGRG00000019913	ikzf1 (ENSSGRG00000019915)	klc1a (ENSSGRG00000019933)	coa8 (ENSSGRG00000020162)	bag5 (ENSSGRG00000020163)	trmt61a (ENSSGRG00000020170)	ckba (ENSSGRG00000020174) ##22	ENSSGRG00000020175	mark3a (ENSSGRG00000020219)	ENSSGRG00000022422	ENSSGRG00000022536	ENSSGRG00000022540	ENSSGRG00000022543	ENSSGRG00000022544	ENSSGRG00000022546	ENSSGRG00000022547	ninl (ENSSGRG00000022553)	gins1 (ENSSGRG00000022567)	pitx3 (ENSSGRG00000022571)	GBF1 (ENSSGRG00000022584)	macroh2a2 (ENSSGRG00000022749)	ENSSGRG00000022842
Goldfish	MODERN SPECIES	31	ENSCARG00000029306	kcnma1a (ENSCARG00000029529)	dlg5a (ENSCARG00000037005)	anxa11a (ENSCARG00000044215)	MOCOS (ENSCARG00000044885)	ENSCARG00000045010	vwc2 (ENSCARG00000045082)	ikzf1 (ENSCARG00000045160)	fignl1 (ENSCARG00000045590)	ttl (ENSCARG00000045607)	klc1a (ENSCARG00000045729)	ENSCARG00000046408	coa8 (ENSCARG00000046422)	bag5 (ENSCARG00000046451)	trmt61a (ENSCARG00000046512)	ckba (ENSCARG00000046562) ##22	ENSCARG00000046809	mark3a (ENSCARG00000046908)	EIF5 (ENSCARG00000050598)	ENSCARG00000050625	ENSCARG00000050635	exoc3l4 (ENSCARG00000050658)	ENSCARG00000050690	ENSCARG00000050710	ENSCARG00000050720	AIFM2 (ENSCARG00000050745)	ninl (ENSCARG00000050765)	gins1 (ENSCARG00000050815)	pitx3 (ENSCARG00000050860)	GBF1 (ENSCARG00000050901)	macroh2a2 (ENSCARG00000051088)
Zebrafish	MODERN SPECIES	4	dlg5a (ENSDARG00000074059)	anxa11a (ENSDARG00000077383)	zgc:110045 (ENSDARG00000057141)	ENSDARG00000110961	vwc2 (ENSDARG00000076495)	SPATA48 (ENSDARG00000109818)	ikzf1 (ENSDARG00000013539)	fignl1 (ENSDARG00000016427)	ttl (ENSDARG00000062418)	ENSDARG00000093131	klc1a (ENSDARG00000009796)	coa8 (ENSDARG00000092473)	bag5 (ENSDARG00000017316)	trmt61a (ENSDARG00000008480)	ENSDARG00000111126	ckba (ENSDARG00000069752) ##22	mark3a (ENSDARG00000019345)	loxl3b (ENSDARG00000039563)	pank2 (ENSDARG00000003311)	mavs (ENSDARG00000069733)	ENSDARG00000104179	sfxn5a (ENSDARG00000103595)	emx1 (ENSDARG00000039569)	noto (ENSDARG00000021201)	cdc25b (ENSDARG00000010792)	ap5s1 (ENSDARG00000076755)	gfra4a (ENSDARG00000056651)	atrn (ENSDARG00000062164)	EIF2AK3 (ENSDARG00000062139)	rpia (ENSDARG00000056640)	slc4a11 (ENSDARG00000075532)
Clupeiformes	ANCESTRAL SPECIES	245	ENSGT00940000159673	ENSGT00390000018691.c	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a.r	ENSGT00940000156116.A	ENSGT00940000164854.b.e	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b
Denticle herring	MODERN SPECIES		CFAP99 (ENSDCDG00000031727)	XKR6 (ENSDCDG00000031725)	maco1b (ENSDCDG00000031707)	ldlrap1b (ENSDCDG00000031701)	FNDC5 (ENSDCDG00000031695)	olig4 (ENSDCDG00000031690)	bsdc1 (ENSDCDG00000031620)	marcksl1a (ENSDCDG00000031610)	ENSDCDG00000031608	zfyve21 (ENSDCDG00000031602)	klc1a (ENSDCDG00000031533)	coa8 (ENSDCDG00000031527)	bag5 (ENSDCDG00000031523)	trmt61a (ENSDCDG00000031521)	ENSDCDG00000031520	ckba (ENSDCDG00000031514) ##22	mark3a (ENSDCDG00000030887)	EIF5 (ENSDCDG00000030820)	ENSDCDG00000030808	exoc3l4 (ENSDCDG00000030806)	CPXM1 (ENSDCDG00000030797)	wdr32 (ENSDCDG00000030787)	pomk (ENSDCDG00000030785)	zgc:123321 (ENSDCDG00000030783)	si:dkey-33c12.4 (ENSDCDG00000030779)	pcgf1 (ENSDCDG00000030775)	si:dkey-33c12.3 (ENSDCDG00000030772)	mrps26 (ENSDCDG00000030767)	si:dkey-112g5.16 (ENSDCDG00000030763)	loxl3b (ENSDCDG00000030698)	pank2 (ENSDCDG00000030680)
Clupeocephala	ANCESTRAL SPECIES	489															ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164834.b	ENSGT01030000234517.H.a
Euteleosteomorpha	ANCESTRAL SPECIES	345															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164834.b	ENSGT01030000234517.H.a
Acanthomorphata	ANCESTRAL SPECIES	155	ENSGT00390000017610.b	ENSGT00940000155490.a.d	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B
Euacanthomorphacea	ANCESTRAL SPECIES	87	ENSGT00390000017610.b	ENSGT00940000155490.a.d	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B
Percomorphaceae	ANCESTRAL SPECIES	59	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00970000195456	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000157501	ENSGT00940000159887
Ovalentaria	ANCESTRAL SPECIES	33	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k
Atherinomorphae	ANCESTRAL SPECIES	27	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00390000018676	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000157501	ENSGT00940000159887
Aplocheiloidei	ANCESTRAL SPECIES	57	ENSGT00390000018676	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
Mangrove rivulus	MODERN SPECIES	101	flvcr1 (ENSKMAG00000015196)	ENSKMAG00000015187	tatdn3 (ENSKMAG00000015161)	nsl1 (ENSKMAG00000015144)	atf3 (ENSKMAG00000015125)	pex3 (ENSKMAG00000015076)	ENSKMAG00000015051	AIG1 (ENSKMAG00000015023)	hivep2a (ENSKMAG00000014993)	ENSKMAG00000014965	vipas39 (ENSKMAG00000014894)	ENSKMAG00000014861	cdc42bpb (ENSKMAG00000014775)	ENSKMAG00000014742	prph2lb (ENSKMAG00000014729)	ckbb (ENSKMAG00000014706) ##22	MARK3 (ENSKMAG00000014622)	ENSKMAG00000014556	ENSKMAG00000014537	CEP170B (ENSKMAG00000014495)	INF2 (ENSKMAG00000014440)	ENSKMAG00000014413	ENSKMAG00000014396	ENSKMAG00000014377	ENSKMAG00000014361	ENSKMAG00000014340
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015007418	ENSNFUG00015007423	FLVCR1 (ENSNFUG00015007432)	NSL1 (ENSNFUG00015007438)	batf3 (ENSNFUG00015007440)	atf3 (ENSNFUG00015007445)	ENSNFUG00015002623	pex3 (ENSNFUG00015002636)	ADAT2 (ENSNFUG00015002668)	AIG1 (ENSNFUG00015002674)	HIVEP2 (ENSNFUG00015002681)	ENSNFUG00015002689	ebna1bp2 (ENSNFUG00015002700)	ENSNFUG00015002705	vipas39 (ENSNFUG00015002718)	ckbb (ENSNFUG00015002742) ##22	cdc42bpb (ENSNFUG00015002882)	prph2lb (ENSNFUG00015003288)	ENSNFUG00015003292	MARK3 (ENSNFUG00015003315)	ENSNFUG00015003422	Nfu_g_1_018754 (ENSNFUG00015003436)	PLEKHG3 (ENSNFUG00015003463)	ENSNFUG00015003482	spint1b (ENSNFUG00015003492)	pak6b (ENSNFUG00015003496)	myh6 (ENSNFUG00015003500)	ENSNFUG00015003502	ENSNFUG00015003509	ENSNFUG00015003515	KIF26A (ENSNFUG00015003522)
Cyprinodontoidei	ANCESTRAL SPECIES	32	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000157501	ENSGT00940000159887
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00950000183116.b.a.b.a.e	ENSGT01030000234667.b.f.a.r
Poecilia	ANCESTRAL SPECIES	71	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
NAME_6	ANCESTRAL SPECIES	165	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
Sailfin molly	MODERN SPECIES	779	batf3 (ENSPLAG00000000460)	atf3 (ENSPLAG00000021318)	rps7 (ENSPLAG00000021335)	ENSPLAG00000021349	pex3 (ENSPLAG00000021381)	ENSPLAG00000021399	AIG1 (ENSPLAG00000021426)	hivep2a (ENSPLAG00000021436)	ENSPLAG00000021446	vipas39 (ENSPLAG00000021461)	ENSPLAG00000021478	cdc42bpb (ENSPLAG00000021501)	ENSPLAG00000021523	ENSPLAG00000021542	prph2lb (ENSPLAG00000021548)	ckbb (ENSPLAG00000021564) ##22	ENSPLAG00000021569
Amazon molly	MODERN SPECIES	610	flvcr1 (ENSPFOG00000017147)	tatdn3 (ENSPFOG00000017125)	nsl1 (ENSPFOG00000017115)	batf3 (ENSPFOG00000017107)	atf3 (ENSPFOG00000017099)	pex3 (ENSPFOG00000017063)	ENSPFOG00000017037	AIG1 (ENSPFOG00000017002)	hivep2a (ENSPFOG00000016971)	ENSPFOG00000016937	vipas39 (ENSPFOG00000016882)	ENSPFOG00000020874	cdc42bpb (ENSPFOG00000016691)	ENSPFOG00000016602	prph2lb (ENSPFOG00000016586)	ckbb (ENSPFOG00000016570) ##22	ENSPFOG00000016567	ENSPFOG00000016566	ENSPFOG00000016535	ENSPFOG00000023717	CEP170B (ENSPFOG00000016483)	INF2 (ENSPFOG00000016421)	ENSPFOG00000016329	PLEKHG3 (ENSPFOG00000016283)	ENSPFOG00000016243	ENSPFOG00000022108	pak6b (ENSPFOG00000016211)	INAFM2 (ENSPFOG00000020872)	ENSPFOG00000016202	zbtb1 (ENSPFOG00000016193)	ZBTB25 (ENSPFOG00000016187)
Guppy	MODERN SPECIES	452	flvcr1 (ENSPREG00000014080)	tatdn3 (ENSPREG00000014054)	nsl1 (ENSPREG00000014035)	batf3 (ENSPREG00000014025)	atf3 (ENSPREG00000013998)	pex3 (ENSPREG00000013958)	ENSPREG00000013931	AIG1 (ENSPREG00000013905)	hivep2a (ENSPREG00000013853)	ENSPREG00000013807	vipas39 (ENSPREG00000013772)	ENSPREG00000013747	cdc42bpb (ENSPREG00000013594)	ENSPREG00000013538	prph2lb (ENSPREG00000013530)	ckbb (ENSPREG00000013507) ##22	ENSPREG00000013502	ENSPREG00000013486	ENSPREG00000013473	ENSPREG00000013467	CEP170B (ENSPREG00000013399)	ENSPREG00000013307	ENSPREG00000013229	ENSPREG00000013195	spint1b (ENSPREG00000013167)	pak6b (ENSPREG00000013145)	myh6 (ENSPREG00000013132)	ENSPREG00000013114	ENSPREG00000013085	zbtb1 (ENSPREG00000013078)	ENSPREG00000013069
Platyfish	MODERN SPECIES	6	ENSXMAG00000025989	batf3 (ENSXMAG00000029183)	atf3 (ENSXMAG00000026118)	ENSXMAG00000023925	pex3 (ENSXMAG00000021480)	ENSXMAG00000017810	AIG1 (ENSXMAG00000017816)	hivep2a (ENSXMAG00000013507)	ENSXMAG00000013522	vipas39 (ENSXMAG00000013526)	ENSXMAG00000021929	ENSXMAG00000019758	cdc42bpb (ENSXMAG00000013537)	ENSXMAG00000029153	prph2lb (ENSXMAG00000006717)	ckbb (ENSXMAG00000006694) ##22	MARK3 (ENSXMAG00000006647)	ENSXMAG00000029044	ENSXMAG00000022562	CEP170B (ENSXMAG00000009581)	ENSXMAG00000027819	PLEKHG3 (ENSXMAG00000009599)	ENSXMAG00000009603	ENSXMAG00000021868	pak6b (ENSXMAG00000009610)	myh6 (ENSXMAG00000026244)	ENSXMAG00000026209	zbtb1 (ENSXMAG00000020178)	ENSXMAG00000027665	ENSXMAG00000026613	ENSXMAG00000009631
NAME_4	ANCESTRAL SPECIES	122	ENSGT00940000157418.a	ENSGT01030000234625.B.c	ENSGT00940000180392	ENSGT00390000001374	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT01030000234613.b.a.a.c.b	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b
Sheepshead minnow	MODERN SPECIES	1857																ckbb (ENSCVAG00000017265) ##22	ENSCVAG00000017235	ENSCVAG00000017227	ENSCVAG00000017216	ENSCVAG00000017195
Mummichog	MODERN SPECIES	2330	ENSFHEG00000011887	nsl1 (ENSFHEG00000011852)	atf3 (ENSFHEG00000011790)	pex3 (ENSFHEG00000011775)	ENSFHEG00000011660	AIG1 (ENSFHEG00000011636)	hivep2a (ENSFHEG00000011595)	ENSFHEG00000011578	vipas39 (ENSFHEG00000011567)	ENSFHEG00000011550	ENSFHEG00000011545	cdc42bpb (ENSFHEG00000011532)	ENSFHEG00000011464	ENSFHEG00000011457	prph2lb (ENSFHEG00000011447)	ckbb (ENSFHEG00000011432) ##22	ENSFHEG00000011377	ENSFHEG00000011367	ENSFHEG00000011355	ENSFHEG00000011315	CEP170B (ENSFHEG00000011300)	ENSFHEG00000011130	ENSFHEG00000011119	ENSFHEG00000011101	ENSFHEG00000011078	ENSFHEG00000011053	pak6b (ENSFHEG00000011029)	myh6 (ENSFHEG00000011004)	ENSFHEG00000010990	ZBTB25 (ENSFHEG00000010979)	ENSFHEG00000010969
Oryzias	ANCESTRAL SPECIES	38	ENSGT00940000161252.h	ENSGT00390000007473	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000163460.a.a.b	ENSGT00940000156512.b.b	ENSGT00940000155734.mb.a	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00940000163429.C	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588
Oryzias_a	DUPLICATION
Oryzias_a	ANCESTRAL SPECIES	48	ENSGT00940000161252.h	ENSGT00390000007473	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.a ##22	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000163460.a.a.b	ENSGT00940000156512.b.b	ENSGT00940000155734.mb.a	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00940000163429.C	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000018186	PPP4R4 (ENSORLG00000018184)	serpina10a (ENSORLG00000018182)	xrcc3 (ENSORLG00000018178)	ENSORLG00000018175	ENSORLG00000018171	btbd6b (ENSORLG00000018172)	ENSORLG00000024040	ENSORLG00000029838	ENSORLG00000018168	vipas39 (ENSORLG00000018164)	ENSORLG00000018161	cdc42bpb (ENSORLG00000018157)	ENSORLG00000029120	ENSORLG00000025956	ENSORLG00000028187 ##22	ccr6a (ENSORLG00000026698)	ENSORLG00000018150	ENSORLG00000018147	kidins220b (ENSORLG00000018143)	allc (ENSORLG00000018141)	ENSORLG00000018136	cpsf3 (ENSORLG00000018854)	ENSORLG00000023593	ENSORLG00000026593	hivep2a (ENSORLG00000018133)	ENSORLG00000018132	myt1la (ENSORLG00000018130)	rnaseh1 (ENSORLG00000018127)	rps7 (ENSORLG00000018123)	ENSORLG00000029165
Chinese medaka	MODERN SPECIES	3560															ENSOSIG00000004906	ckbb (ENSOSIG00000004904) ##22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.`b.b.b ##22
Chinese medaka	MODERN SPECIES	827																ckbb (ENSOSIG00000009827) ##22	ENSOSIG00000009833
Oryzias_b	ANCESTRAL SPECIES	55															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000163460.a.a.b	ENSGT00940000156512.b.b	ENSGT00940000155734.mb.a	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00940000163429.C	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588
Javanese ricefish	MODERN SPECIES	16	PRKD3 (ENSOJAG00000019421)	cnksr3 (ENSOJAG00000020203)	rps7 (ENSOJAG00000020241)	rnaseh1 (ENSOJAG00000020297)	myt1la (ENSOJAG00000020313)	e2f6 (ENSOJAG00000020421)	hivep2a (ENSOJAG00000020438)	ENSOJAG00000020450	ENSOJAG00000020467	ENSOJAG00000020472	cpsf3 (ENSOJAG00000020520)	asap2b (ENSOJAG00000020916)	ENSOJAG00000021586	allc (ENSOJAG00000021592)	ENSOJAG00000021634	ckbb (ENSOJAG00000021637) ##22	ccr6a (ENSOJAG00000021679)	cep43 (ENSOJAG00000021689)	ENSOJAG00000021771	ENSOJAG00000021773
Indian medaka	MODERN SPECIES	103	ANKRD50 (ENSOMEG00000009495)	SOX1 (ENSOMEG00000009509)	arhgef7b (ENSOMEG00000009571)	ENSOMEG00000009639	ENSOMEG00000009658	unc50 (ENSOMEG00000000237)	ndufs1 (ENSOMEG00000009803)	ENSOMEG00000009830	creb3l1 (ENSOMEG00000009850)	HARBI1 (ENSOMEG00000009868)	atg13 (ENSOMEG00000010014)	kpnb3 (ENSOMEG00000010107)	ENSOMEG00000010136	ENSOMEG00000010146	prph2lb (ENSOMEG00000010160)	ckbb (ENSOMEG00000010183) ##22	ENSOMEG00000010190	ENSOMEG00000010195	ccr6a (ENSOMEG00000010197)	ENSOMEG00000010218	kidins220b (ENSOMEG00000010367)	allc (ENSOMEG00000010415)	asap2b (ENSOMEG00000010590)	cpsf3 (ENSOMEG00000010647)	ENSOMEG00000010661
Ovalentaria_B	ANCESTRAL SPECIES	32	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00980000198805	ENSGT00940000156528.d
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000176951	ENSGT00940000154862.x.a.b.b	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b.k	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	833															ENSPNYG00000014625	ckbb (ENSPNYG00000014641) ##22	ENSPNYG00000014658	ENSPNYG00000014703	ENSPNYG00000014715	CEP170B (ENSPNYG00000014737)	ENSPNYG00000014784
P. nyererei	MODERN SPECIES	892													ENSPNYG00000003467	ENSPNYG00000003461	prph2lb (ENSPNYG00000003446)	ckbb (ENSPNYG00000003405) ##22	ENSPNYG00000003379
Haplochromini_B	ANCESTRAL SPECIES	49	ENSGT00390000017610.b	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b	ENSGT00940000164656.b.b.a.a.a.b.a.a.a.b.b.a.a.b	ENSGT00940000176951.e.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b.k	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b
Eastern happy	MODERN SPECIES	6	ENSACLG00000017611	PPP4R4 (ENSACLG00000017461)	ENSACLG00000017445	serpina10a (ENSACLG00000017350)	ENSACLG00000017337	xrcc3 (ENSACLG00000017294)	btbd6b (ENSACLG00000017278)	brf1b (ENSACLG00000017136)	ENSACLG00000017119	vipas39 (ENSACLG00000017078)	ENSACLG00000017057	cdc42bpb (ENSACLG00000016483)	ENSACLG00000016448	prph2lb (ENSACLG00000016443)	ENSACLG00000016439	ckbb (ENSACLG00000016418) ##22	ENSACLG00000016403	ENSACLG00000016371	MARK3 (ENSACLG00000016273)	ENSACLG00000016253	ENSACLG00000016232	ENSACLG00000016200	ENSACLG00000016172	CEP170B (ENSACLG00000016120)	ENSACLG00000016007	ENSACLG00000015991	ENSACLG00000015949	ZBTB25 (ENSACLG00000015938)	zbtb1 (ENSACLG00000015933)	ENSACLG00000015911	myh6 (ENSACLG00000015908)
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005014916	tmem251 (ENSMZEG00005014923)	ENSMZEG00005014928	ENSMZEG00005014934	PPP4R4 (ENSMZEG00005014946)	serpina10a (ENSMZEG00005014963)	xrcc3 (ENSMZEG00005014979)	brf1b (ENSMZEG00005014995)	btbd6b (ENSMZEG00005015024)	ENSMZEG00005015028	vipas39 (ENSMZEG00005015035)	ENSMZEG00005015045	cdc42bpb (ENSMZEG00005015072)	ENSMZEG00005015194	prph2lb (ENSMZEG00005015203)	ckbb (ENSMZEG00005015208) ##22	ENSMZEG00005015215	ENSMZEG00005015225	ENSMZEG00005015250	ENSMZEG00005015255	ENSMZEG00005015273	ENSMZEG00005015280	ptchd4 (ENSMZEG00005015331)	CNIH3 (ENSMZEG00005015348)	ENSMZEG00005015360	ENSMZEG00005015366	rpl7l1 (ENSMZEG00005015377)	slc5a6a (ENSMZEG00005015396)	ENSMZEG00005015430	ephx1 (ENSMZEG00005015445)	lbr (ENSMZEG00005015462)
Lyretail cichlid	MODERN SPECIES	318	tmem251 (ENSNBRG00000002471)	ASB2 (ENSNBRG00000002476)	ENSNBRG00000002496	PPP4R4 (ENSNBRG00000002528)	ENSNBRG00000002654	xrcc3 (ENSNBRG00000002689)	brf1b (ENSNBRG00000002716)	btbd6b (ENSNBRG00000002756)	ENSNBRG00000002779	vipas39 (ENSNBRG00000002862)	ENSNBRG00000002907	cdc42bpb (ENSNBRG00000002959)	ENSNBRG00000003142	ENSNBRG00000003155	ENSNBRG00000003170	ckbb (ENSNBRG00000003192) ##22	ENSNBRG00000003228	ENSNBRG00000003251	ENSNBRG00000003271	ENSNBRG00000003333	ENSNBRG00000003440	ENSNBRG00000003458	ENSNBRG00000003484	CEP170B (ENSNBRG00000003530)	ENSNBRG00000003671	ENSNBRG00000003696	ENSNBRG00000003720	ZBTB25 (ENSNBRG00000003766)	zbtb1 (ENSNBRG00000003781)	INAFM2 (ENSNBRG00000003787)	ENSNBRG00000003801
Nile tilapia	MODERN SPECIES	6	ENSONIG00000032571	TAAR1 (ENSONIG00000020710)	ENSONIG00000032677	ENSONIG00000000224	ENSONIG00000030874	ENSONIG00000037254	ENSONIG00000027141	ENSONIG00000043137	ENSONIG00000038430	ENSONIG00000019032	vipas39 (ENSONIG00000019030)	ENSONIG00000021182	cdc42bpb (ENSONIG00000019024)	ENSONIG00000037245	prph2lb (ENSONIG00000020147)	ckbb (ENSONIG00000019020) ##22	ENSONIG00000019019	ENSONIG00000019017	MARK3 (ENSONIG00000019014)	ENSONIG00000037576	ENSONIG00000019022	ENSONIG00000028114	ENSONIG00000018851	ENSONIG00000018850	CEP170B (ENSONIG00000018846)	ENSONIG00000033376	ENSONIG00000018840	zbtb25 (ENSONIG00000042861)	zbtb1 (ENSONIG00000021262)	ENSONIG00000038327	ENSONIG00000030639
Midas cichlid	MODERN SPECIES	1248															ENSACIG00000010443	ckbb (ENSACIG00000010453) ##22	ENSACIG00000010473	ENSACIG00000010481	ENSACIG00000010531	ENSACIG00000010544	slc2a8 (ENSACIG00000010553)
Pomacentridae	ANCESTRAL SPECIES	81		ENSGT00700000106116.a.a	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a
Pomacentridae_A	ANCESTRAL SPECIES	77		ENSGT00700000106116.a.a	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a
Amphiprion	ANCESTRAL SPECIES	58	ENSGT00390000010101	ENSGT00700000106116.a.a	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a
Orange clownfish	MODERN SPECIES	2	EPM2A (ENSAPEG00000016979)	C14orf132 (ENSAPEG00000017002)	ENSAPEG00000017012	ENSAPEG00000017107	PPP4R4 (ENSAPEG00000017202)	ENSAPEG00000017231	xrcc3 (ENSAPEG00000017242)	brf1b (ENSAPEG00000017279)	ENSAPEG00000017359	btbd6b (ENSAPEG00000017405)	ENSAPEG00000017423	vipas39 (ENSAPEG00000017446)	ENSAPEG00000017521	cdc42bpb (ENSAPEG00000017537)	prph2lb (ENSAPEG00000017685)	ckbb (ENSAPEG00000017696) ##22	ENSAPEG00000017729	ENSAPEG00000017744	ENSAPEG00000017824	ENSAPEG00000017852	ENSAPEG00000017874	CEP170B (ENSAPEG00000017917)	ENSAPEG00000018006	ENSAPEG00000018025	ENSAPEG00000018040	ZBTB25 (ENSAPEG00000018060)	zbtb1 (ENSAPEG00000018068)	ENSAPEG00000018074	ENSAPEG00000018309	pak6b (ENSAPEG00000018320)	ENSAPEG00000018335
Clown anemonefish	MODERN SPECIES	1603													ENSAOCG00000014877	cdc42bpb (ENSAOCG00000001010)	prph2lb (ENSAOCG00000014783)	ckbb (ENSAOCG00000014766) ##22	ENSAOCG00000014754	MARK3 (ENSAOCG00000014728)	ENSAOCG00000014618	ENSAOCG00000014602	ENSAOCG00000014591	CEP170B (ENSAOCG00000014540)	ENSAOCG00000014484	ENSAOCG00000014458
Spiny chromis	MODERN SPECIES	1195					PPP4R4 (ENSAPOG00000012342)	ENSAPOG00000012319	xrcc3 (ENSAPOG00000012312)	brf1b (ENSAPOG00000012303)	ENSAPOG00000012216	btbd6b (ENSAPOG00000012159)	ENSAPOG00000012146	vipas39 (ENSAPOG00000012120)	ENSAPOG00000012008	cdc42bpb (ENSAPOG00000011996)	prph2lb (ENSAPOG00000000922)	ckbb (ENSAPOG00000011781) ##22	ENSAPOG00000011725	MARK3 (ENSAPOG00000011714)	ENSAPOG00000000760	ENSAPOG00000011628	ENSAPOG00000011614
Bicolor damselfish	MODERN SPECIES	1575						ENSSPAG00000003108	xrcc3 (ENSSPAG00000003096)	ENSSPAG00000003066	btbd6b (ENSSPAG00000003043)	brf1b (ENSSPAG00000002964)	ENSSPAG00000002923	vipas39 (ENSSPAG00000002837)	ENSSPAG00000002819	cdc42bpb (ENSSPAG00000002537)	prph2lb (ENSSPAG00000002484)	ckbb (ENSSPAG00000002450) ##22	MARK3 (ENSSPAG00000002343)	ENSSPAG00000002297	ENSSPAG00000002283
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Tetraodontidae	ANCESTRAL SPECIES	36	ENSGT00940000157012.l	ENSGT00940000161252.h	ENSGT00390000007473	ENSGT00940000176260	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00390000013955	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000157058.k	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793
Tetraodon	MODERN SPECIES	5							ASB2 (ENSTNIG00000004808)	ENSTNIG00000004807	serpina10a (ENSTNIG00000004806)	xrcc3 (ENSTNIG00000004805)	btbd6b (ENSTNIG00000004804)	brf1b (ENSTNIG00000004803)	vipas39 (ENSTNIG00000004802)	cdc42bpb (ENSTNIG00000004801)	prph2lb (ENSTNIG00000004800)	ckbb (ENSTNIG00000004799) ##22	ENSTNIG00000004798	CEP170B (ENSTNIG00000004797)	ENSTNIG00000000136	ENSTNIG00000004796	ENSTNIG00000004794	zbtb1 (ENSTNIG00000004793)	ENSTNIG00000004792	ENSTNIG00000004791	ccr6a (ENSTNIG00000004790)	ENSTNIG00000001118	kidins220b (ENSTNIG00000002502)	allc (ENSTNIG00000002503)	asap2b (ENSTNIG00000002504)	cpsf3 (ENSTNIG00000002505)	ADAM17 (ENSTNIG00000002506)
Fugu	MODERN SPECIES	7	ENSTRUG00000016018	ENSTRUG00000031677	CLDN20 (ENSTRUG00000016082)	tmem251 (ENSTRUG00000016086)	ENSTRUG00000020039	ubr7 (ENSTRUG00000016088)	ASB2 (ENSTRUG00000016113)	ENSTRUG00000016175	xrcc3 (ENSTRUG00000016205)	ENSTRUG00000020716	btbd6b (ENSTRUG00000016244)	brf1b (ENSTRUG00000016217)	vipas39 (ENSTRUG00000016248)	cdc42bpb (ENSTRUG00000016273)	prph2lb (ENSTRUG00000016317)	ckbb (ENSTRUG00000016321) ##22	MARK3 (ENSTRUG00000016333)	ENSTRUG00000028942	ENSTRUG00000002634	CEP170B (ENSTRUG00000029408)	ENSTRUG00000029307	ENSTRUG00000004077	pak6b (ENSTRUG00000004444)	ENSTRUG00000029598	myh6 (ENSTRUG00000005019)	zbtb1 (ENSTRUG00000005069)	ENSTRUG00000023261	ENSTRUG00000026080	ccr6 (ENSTRUG00000005295)	ENSTRUG00000005325	kidins220b (ENSTRUG00000005483)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1052														ENSLBEG00000014575	prph2lb (ENSLBEG00000014555)	ckbb (ENSLBEG00000014523) ##22	ENSLBEG00000014516	ENSLBEG00000014497
Ballan wrasse	MODERN SPECIES	4903																ckbb (ENSLBEG00000012389) ##22
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00970000193712	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B	ENSGT00940000161983.b
Cottioidei	ANCESTRAL SPECIES	50	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.a.a	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000159075.B	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000156714.b	ENSGT00940000161652.b.a
Stickleback	MODERN SPECIES	18	ENSGACG00000013577	ENSGACG00000013578	glo1 (ENSGACG00000013580)	ENSGACG00000013585	ENSGACG00000013588	ubr7 (ENSGACG00000013590)	tmem251 (ENSGACG00000013624)	ENSGACG00000013627	PPP4R4 (ENSGACG00000013637)	ENSGACG00000013654	xrcc3 (ENSGACG00000013664)	brf1b (ENSGACG00000013671)	vipas39 (ENSGACG00000013674)	cdc42bpb (ENSGACG00000013698)	prph2lb (ENSGACG00000013713)	ckbb (ENSGACG00000013716) ##22	ENSGACG00000013756	ENSGACG00000013759	INF2 (ENSGACG00000013761)	ENSGACG00000013769	ENSGACG00000013780	zbtb1 (ENSGACG00000013781)	myh6 (ENSGACG00000013782)	pak6b (ENSGACG00000013785)	spint1b (ENSGACG00000013791)	ENSGACG00000013797	KIF26A (ENSGACG00000013799)	ccr6a (ENSGACG00000013807)	cep43 (ENSGACG00000013808)	mboat2b (ENSGACG00000013813)
Lumpfish	MODERN SPECIES	16	ubr7 (ENSCLMG00005005110)	ENSCLMG00005005115	tmem251 (ENSCLMG00005005117)	TRIM50 (ENSCLMG00005005118)	ASB2 (ENSCLMG00005005123)	ENSCLMG00005005131	serpina10a (ENSCLMG00005005135)	xrcc3 (ENSCLMG00005005136)	BRF1 (ENSCLMG00005005142)	ENSCLMG00005005158	ENSCLMG00005005168	vipas39 (ENSCLMG00005005179)	ENSCLMG00005006958	cdc42bpb (ENSCLMG00005006974)	ENSCLMG00005007050	CKB (ENSCLMG00005007052) ##22	ENSCLMG00005007063	ENSCLMG00005007064	ENSCLMG00005007066	ENSCLMG00005007067	zbtb1 (ENSCLMG00005007068)	myh6 (ENSCLMG00005007070)	PAK6 (ENSCLMG00005007073)	ENSCLMG00005007074	ENSCLMG00005007075	ENSCLMG00005007076	KIF26A (ENSCLMG00005007077)	ccr6a (ENSCLMG00005007080)	cep43 (ENSCLMG00005007083)	mboat2b (ENSCLMG00005007087)	kidins220b (ENSCLMG00005007090)
Perciformes_a	ANCESTRAL SPECIES	43	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B	ENSGT00940000161983.b	ENSGT01030000234667.b.f.a
Pike perch	MODERN SPECIES	105	tmem251 (ENSSLUG00000014405)	TRIM50 (ENSSLUG00000014414)	ASB2 (ENSSLUG00000014421)	ENSSLUG00000014433	ENSSLUG00000014495	ENSSLUG00000014508	ENSSLUG00000014515	xrcc3 (ENSSLUG00000014519)	brf1b (ENSSLUG00000014536)	ENSSLUG00000014596	ENSSLUG00000014619	vipas39 (ENSSLUG00000014664)	ENSSLUG00000014733	cdc42bpb (ENSSLUG00000014787)	prph2lb (ENSSLUG00000015040)	ckbb (ENSSLUG00000015046) ##22	ENSSLUG00000015062	ENSSLUG00000015064	ENSSLUG00000015071	ENSSLUG00000015076	ENSSLUG00000015080	ENSSLUG00000015082	ENSSLUG00000015087	zbtb1 (ENSSLUG00000015094)	myh6 (ENSSLUG00000015132)	PAK6 (ENSSLUG00000015227)	ENSSLUG00000015238	ENSSLUG00000015242	ENSSLUG00000015254	ENSSLUG00000015269	ENSSLUG00000015277
Channel bull blenny	MODERN SPECIES	51	ENSCGOG00000003450	PPP4R4 (ENSCGOG00000003447)	ENSCGOG00000003446	ENSCGOG00000003444	xrcc3 (ENSCGOG00000003442)	ENSCGOG00000003435	ENSCGOG00000003434	vipas39 (ENSCGOG00000003353)	ENSCGOG00000003343	ENSCGOG00000003340	ENSCGOG00000003337	ENSCGOG00000003336	ENSCGOG00000003330	prph2lb (ENSCGOG00000003315)	ENSCGOG00000003313	ckbb (ENSCGOG00000002746) ##22	ENSCGOG00000022156	CEP170B (ENSCGOG00000022146)	ENSCGOG00000022143	ENSCGOG00000022141	ZBTB25 (ENSCGOG00000022138)	zbtb1 (ENSCGOG00000022137)	spint1b (ENSCGOG00000021918)	ENSCGOG00000021913	KIF26A (ENSCGOG00000021910)
Eupecaria_C	ANCESTRAL SPECIES	46	ENSGT01030000234834	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000157058.k.k	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.l	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	52	ENSGT01030000234834	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.l	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
European seabass	MODERN SPECIES	7	ENSDLAG00005029703	ENSDLAG00005026964	ENSDLAG00005005270	ENSDLAG00005027561	ENSDLAG00005016770	xrcc3 (ENSDLAG00005026522)	ENSDLAG00005007541	ENSDLAG00005007516	btbd6b (ENSDLAG00005007534)	ENSDLAG00005029750	ENSDLAG00005017890	ENSDLAG00005006178	ENSDLAG00005029551	ENSDLAG00005029762	ENSDLAG00005027515	ENSDLAG00005004311 ##22	ENSDLAG00005002426	ENSDLAG00005030208	ENSDLAG00005031310	ENSDLAG00005013915	ENSDLAG00005014042	ENSDLAG00005016760	ENSDLAG00005029937	ENSDLAG00005031053	ENSDLAG00005010151	ENSDLAG00005027008	ENSDLAG00005013008	ENSDLAG00005015638	ENSDLAG00005015630	ENSDLAG00005006753	ENSDLAG00005013002
Large yellow croaker	MODERN SPECIES	67	TRIM50 (ENSLCRG00005018464)	vipas39 (ENSLCRG00005018474)	ENSLCRG00005018668	brf1b (ENSLCRG00005018679)	btbd6b (ENSLCRG00005018684)	ENSLCRG00005018686	xrcc3 (ENSLCRG00005018688)	serpina10a (ENSLCRG00005018689)	ENSLCRG00005018692	ASB2 (ENSLCRG00005018699)	ENSLCRG00005018700	ubr7 (ENSLCRG00005018701)	tmem251 (ENSLCRG00005018702)	cdc42bpb (ENSLCRG00005018773)	prph2lb (ENSLCRG00005022233)	ckbb (ENSLCRG00005001482) ##22	ENSLCRG00005001579	ENSLCRG00005001586	CEP170B (ENSLCRG00005001601)	ENSLCRG00005001630	ENSLCRG00005001638	PLEKHG3 (ENSLCRG00005001647)	spint1b (ENSLCRG00005001698)	pak6b (ENSLCRG00005001720)	myh6 (ENSLCRG00005001739)	ENSLCRG00005001766	zbtb1 (ENSLCRG00005001778)	ENSLCRG00005001784	ENSLCRG00005001795	ENSLCRG00005001808
Gilthead seabream	MODERN SPECIES	14	ENSSAUG00010003254	ENSSAUG00010003257	ccr6a (ENSSAUG00010003259)	ENSSAUG00010003261	cep43 (ENSSAUG00010003269)	ENSSAUG00010003288	mboat2b (ENSSAUG00010003310)	ENSSAUG00010003375	kidins220b (ENSSAUG00010003384)	ENSSAUG00010003400	ENSSAUG00010003405	allc (ENSSAUG00010003411)	ENSSAUG00010003478	ENSSAUG00010003481	prph2lb (ENSSAUG00010003483)	ckbb (ENSSAUG00010003484) ##22	ENSSAUG00010003493	ENSSAUG00010003496	ENSSAUG00010003500	ENSSAUG00010003507	ENSSAUG00010003512	ENSSAUG00010003515	CEP170B (ENSSAUG00010003518)
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Anabantaria	ANCESTRAL SPECIES	24	ENSGT00940000176260	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
Climbing perch	MODERN SPECIES	15	ENSATEG00000008503	ENSATEG00000008484	ENSATEG00000008466	ENSATEG00000026683	btbd6b (ENSATEG00000008447)	ENSATEG00000008425	ENSATEG00000008191	ENSATEG00000008118	ENSATEG00000008109	ENSATEG00000008077	ENSATEG00000007973	ENSATEG00000028582	ENSATEG00000007549	ENSATEG00000007520	ENSATEG00000007516	CKB (ENSATEG00000007497) ##22	MARK3 (ENSATEG00000006494)	ENSATEG00000014372	ENSATEG00000006389	ENSATEG00000026191	ENSATEG00000006377	ENSATEG00000006034	ENSATEG00000004398	ENSATEG00000029310	ENSATEG00000005937	ENSATEG00000005928	ENSATEG00000005922	ENSATEG00000026941	ENSATEG00000005909	ENSATEG00000005527	ENSATEG00000005504
Siamese fighting fish	MODERN SPECIES	13	TRIM50 (ENSBSLG00000021576)	ENSBSLG00000021571	ENSBSLG00000021565	ENSBSLG00000021561	PPP4R4 (ENSBSLG00000021479)	ENSBSLG00000021463	xrcc3 (ENSBSLG00000021428)	btbd6b (ENSBSLG00000021418)	BRF1 (ENSBSLG00000021378)	ENSBSLG00000021363	vipas39 (ENSBSLG00000021154)	ENSBSLG00000020699	cdc42bpb (ENSBSLG00000020149)	ENSBSLG00000020096	prph2lb (ENSBSLG00000020082)	ckbb (ENSBSLG00000020003) ##22	MARK3 (ENSBSLG00000018309)	ENSBSLG00000017930	ENSBSLG00000017925	CEP170B (ENSBSLG00000017877)	PLEKHG3 (ENSBSLG00000017778)	ENSBSLG00000017596	ENSBSLG00000017583	pak6b (ENSBSLG00000016920)	ENSBSLG00000016875	myh6 (ENSBSLG00000016859)	zbtb1 (ENSBSLG00000016845)	ZBTB25 (ENSBSLG00000016839)	ENSBSLG00000016822	KIF26A (ENSBSLG00000016901)	ENSBSLG00000016581
Zig-zag eel	MODERN SPECIES	30	ubr7 (ENSMAMG00000000940)	ENSMAMG00000000966	ENSMAMG00000001003	ENSMAMG00000001123	ENSMAMG00000001215	ENSMAMG00000001432	ENSMAMG00000001459	xrcc3 (ENSMAMG00000001490)	ENSMAMG00000001529	btbd6b (ENSMAMG00000001551)	ENSMAMG00000001569	ENSMAMG00000001606	ENSMAMG00000001931	ENSMAMG00000001707	ENSMAMG00000001951	CKB (ENSMAMG00000001970) ##22	ENSMAMG00000026768	MARK3 (ENSMAMG00000002003)	ENSMAMG00000002160	ENSMAMG00000002184	ENSMAMG00000028327	ENSMAMG00000002264	ENSMAMG00000002290	ENSMAMG00000002326	ENSMAMG00000002333	ENSMAMG00000002352	ENSMAMG00000002362	ENSMAMG00000002367	zbtb1 (ENSMAMG00000002376)	ENSMAMG00000002380	ENSMAMG00000027061
Carangaria	ANCESTRAL SPECIES	18	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805
Pleuronectoidei	ANCESTRAL SPECIES	56	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000157058.k	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000156714.b
Turbot	MODERN SPECIES	12	ENSSMAG00000033307	ENSSMAG00000023420	ENSSMAG00000034743	ENSSMAG00000026578	serpina10a (ENSSMAG00000036016)	ENSSMAG00000027652	ENSSMAG00000027465	btbd6b (ENSSMAG00000024727)	ENSSMAG00000027159	ENSSMAG00000009673	ENSSMAG00000010292	ENSSMAG00000010681	ENSSMAG00000010407	ENSSMAG00000010686	ENSSMAG00000024244	CKB (ENSSMAG00000010692) ##22	MARK3 (ENSSMAG00000010713)	ENSSMAG00000010738	ENSSMAG00000010772	ENSSMAG00000033215	ENSSMAG00000010826	ENSSMAG00000030711	ENSSMAG00000029128	ENSSMAG00000036007	zbtb1 (ENSSMAG00000026890)	ENSSMAG00000026065	ENSSMAG00000029617	ENSSMAG00000022158	ENSSMAG00000023241	ENSSMAG00000022841	mboat2b (ENSSMAG00000024083)
Carangaria_A	ANCESTRAL SPECIES	35	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.h	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Seriola	ANCESTRAL SPECIES	86	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.b	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.h	ENSGT00940000155691.c.b	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887
Greater amberjack	MODERN SPECIES	105	ENSSDUG00000016882	ENSSDUG00000016860	ENSSDUG00000016838	ENSSDUG00000016796	ENSSDUG00000016741	xrcc3 (ENSSDUG00000016722)	ENSSDUG00000016671	btbd6b (ENSSDUG00000016647)	brf1b (ENSSDUG00000016618)	ENSSDUG00000016603	vipas39 (ENSSDUG00000016542)	ENSSDUG00000016528	cdc42bpb (ENSSDUG00000016488)	ENSSDUG00000016469	prph2lb (ENSSDUG00000016460)	ckbb (ENSSDUG00000016441) ##22	MARK3 (ENSSDUG00000016373)	ENSSDUG00000016336	ENSSDUG00000016323	ENSSDUG00000016313	CEP170B (ENSSDUG00000016213)	ENSSDUG00000016185	PLEKHG3 (ENSSDUG00000016163)	ENSSDUG00000016147	ENSSDUG00000016128	pak6b (ENSSDUG00000016115)	ENSSDUG00000016103	ENSSDUG00000016091	ENSSDUG00000016079	ENSSDUG00000016070	ENSSDUG00000016055
Yellowtail amberjack	MODERN SPECIES	3247	TRIM50 (ENSSLDG00000001012)	ENSSLDG00000001003	ENSSLDG00000000887	PPP4R4 (ENSSLDG00000000711)	ENSSLDG00000000688	ENSSLDG00000000685	xrcc3 (ENSSLDG00000000677)	ENSSLDG00000000593	btbd6b (ENSSLDG00000000569)	brf1b (ENSSLDG00000000494)	ENSSLDG00000000444	vipas39 (ENSSLDG00000000367)	ENSSLDG00000000347	cdc42bpb (ENSSLDG00000000105)	prph2lb (ENSSLDG00000025688)	ckbb (ENSSLDG00000025687) ##22	MARK3 (ENSSLDG00000025686)	ENSSLDG00000025685	ENSSLDG00000025684	ENSSLDG00000025683	CEP170B (ENSSLDG00000025682)	ENSSLDG00000025681
Barramundi perch	MODERN SPECIES	385	ENSLCAG00010017456	ENSLCAG00010017462	ENSLCAG00010017474	xrcc3 (ENSLCAG00010017476)	brf1b (ENSLCAG00010017485)	ENSLCAG00010017515	btbd6b (ENSLCAG00010017532)	ENSLCAG00010017533	vipas39 (ENSLCAG00010017620)	ENSLCAG00010017913	cdc42bpb (ENSLCAG00010017932)	ENSLCAG00010017956	ENSLCAG00010017957	ENSLCAG00010017960	prph2lb (ENSLCAG00010017963)	ckbb (ENSLCAG00010017966) ##22	ENSLCAG00010017980	MARK3 (ENSLCAG00010017986)	ENSLCAG00010017996	ENSLCAG00010018000	ENSLCAG00010018004	CEP170B (ENSLCAG00010018009)	ENSLCAG00010018014	INF2 (ENSLCAG00010018019)	ENSLCAG00010018024	ENSLCAG00010018026	ENSLCAG00010018030	ZBTB25 (ENSLCAG00010018048)	zbtb1 (ENSLCAG00010018049)	ENSLCAG00010018052	ENSLCAG00010018057
Tiger tail seahorse	MODERN SPECIES	340	ENSHCOG00000008725	ENSHCOG00000008713	myo6a (ENSHCOG00000008698)	ENSHCOG00000008643	FILIP1 (ENSHCOG00000008600)	ENSHCOG00000008559	ENSHCOG00000008551	ENSHCOG00000008540	xrcc3 (ENSHCOG00000008533)	ENSHCOG00000008527	ENSHCOG00000008514	ENSHCOG00000008481	ENSHCOG00000008466	vipas39 (ENSHCOG00000008444)	cdc42bpb (ENSHCOG00000008423)	ckbb (ENSHCOG00000008329) ##22	ENSHCOG00000008311	CEP170B (ENSHCOG00000008298)	ENSHCOG00000008285	spint1b (ENSHCOG00000008268)	psmb6 (ENSHCOG00000008258)	ENSHCOG00000008251	vsx2 (ENSHCOG00000008242)	ENSHCOG00000008207	abcd4 (ENSHCOG00000008159)	SGPP1 (ENSHCOG00000008121)	kcnh5a (ENSHCOG00000008109)	L3HYPDH (ENSHCOG00000008061)	daam1b (ENSHCOG00000008052)	ppp1r13bb (ENSHCOG00000007945)	eif2b2 (ENSHCOG00000007914)
Cod	MODERN SPECIES	13	ENSGMOG00000009208	btbd6b (ENSGMOG00000009315)	ENSGMOG00000009345	ENSGMOG00000002969	ENSGMOG00000023255	ENSGMOG00000029601	ENSGMOG00000002898	ENSGMOG00000028387	ENSGMOG00000028191	ENSGMOG00000025722	ENSGMOG00000024894	ENSGMOG00000017390	ENSGMOG00000032002	ENSGMOG00000002989	ENSGMOG00000031651	ENSGMOG00000010070 ##22	ENSGMOG00000029645	ENSGMOG00000032329	ENSGMOG00000003022	ENSGMOG00000037113	spint1b (ENSGMOG00000013234)	ENSGMOG00000023599	ENSGMOG00000027113	ENSGMOG00000020224	ENSGMOG00000025631	ENSGMOG00000022605	ENSGMOG00000015786	ENSGMOG00000015800	ENSGMOG00000023128	ENSGMOG00000012179	ENSGMOG00000036089
Protacanthopterygii	ANCESTRAL SPECIES	193															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000154862.x.a.b.a.b	ENSGT01030000234848	ENSGT00940000154862.y	ENSGT00940000154862.x.a.b.a.a	ENSGT00390000016478.e	ENSGT01030000234613.b.a.a.c.b	ENSGT00940000164834.b	ENSGT01030000234517.H.a	ENSGT00940000156927	ENSGT00940000159071.y.b	ENSGT00940000167479	ENSGT00940000154598	ENSGT00390000015102.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	622															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.g ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b.h ##22	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478.e.a	ENSGT00940000154862.y.d	ENSGT00390000016478.e.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e	ENSGT00940000156927.`b.a	ENSGT01030000234613.b.a.a.c.b.e
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000154805.b.g.e.a.u.a.a.a.a.d	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000159075.B	ENSGT00940000163655.b	ENSGT01030000234848.a	ENSGT00950000182772.A.a.b.`b.b.g ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00390000016478.e.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f	ENSGT01030000234613.b.a.a.c.b.e	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e	ENSGT00940000156927.`b.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000009816.b
Salmo	ANCESTRAL SPECIES	52	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00950000183116.b.a.b.a.a	ENSGT00940000163520.A.a.a.a.b.b.b	ENSGT00940000159887.a	ENSGT00940000157501.e	ENSGT00940000159075.B	ENSGT01100000266706	ENSGT00940000163655.b	ENSGT01030000234848.a	ENSGT00950000182772.A.a.b.`b.b.g ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00390000016478.e.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f	ENSGT01030000234613.b.a.a.c.b.e	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e	ENSGT00940000156927.`b.a	ENSGT00940000156927.`b.b	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000047945	ENSSSAG00000047958	ENSSSAG00000047965	ENSSSAG00000047972	ENSSSAG00000088306	ENSSSAG00000048014	ENSSSAG00000090445	ENSSSAG00000115691	ENSSSAG00000103170	ENSSSAG00000105968	ENSSSAG00000088891	ENSSSAG00000048064	ENSSSAG00000084611	ENSSSAG00000120835	ENSSSAG00000048358	CKB (ENSSSAG00000048236) ##22	MARK3 (ENSSSAG00000048617)	IF5 (ENSSSAG00000061889)	ENSSSAG00000062187	tnfaip2a (ENSSSAG00000106959)	tnfaip2a (ENSSSAG00000062279)	LBH (ENSSSAG00000062440)	cdc42bpb (ENSSSAG00000040963)	ENSSSAG00000040165	ENSSSAG00000040391	ENSSSAG00000039498	ccdc85cb (ENSSSAG00000045488)	ccnk (ENSSSAG00000039406)	ENSSSAG00000085155	ENSSSAG00000075642	ENSSSAG00000073556
River trout	MODERN SPECIES	28	ENSSTUG00000025520	spint1b (ENSSTUG00000025538)	ppp1r14d (ENSSTUG00000025564)	ENSSTUG00000025572	pak6b (ENSSTUG00000025615)	myh6 (ENSSTUG00000025632)	ENSSTUG00000025646	ENSSTUG00000025650	ENSSTUG00000025667	ENSSTUG00000025739	zbtb1 (ENSSTUG00000025748)	KIF26A (ENSSTUG00000025769)	ENSSTUG00000025888	ENSSTUG00000025899	prph2lb (ENSSTUG00000025904)	ckbb (ENSSTUG00000025914) ##22	mark3b (ENSSTUG00000026094)	eif5 (ENSSTUG00000028811)	ENSSTUG00000028934	tnfaip2a (ENSSTUG00000028955)	ENSSTUG00000028993	si:dkeyp-72h1.1 (ENSSTUG00000029000)	cdc42bpb (ENSSTUG00000029024)	ENSSTUG00000029185	ENSSTUG00000029200	ENSSTUG00000029488	ccdc85cb (ENSSTUG00000029911)	ccnk (ENSSTUG00000029917)	ENSSTUG00000029924	papola (ENSSTUG00000030211)	ak7a (ENSSTUG00000036501)
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000154805.b.g.e.a.u.a.a.a.a.d	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000159075.B	ENSGT00940000163655.b	ENSGT01030000234848.a	ENSGT00950000182772.A.a.b.`b.b.g ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT00390000016478.e.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.e	ENSGT00940000156927.`b.b.a.a.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000009816.b	ENSGT00940000154209.a.a.h.b	ENSGT00940000156661.e	ENSGT00940000154209.a.b.a.g.a
Oncorhynchus_a	ANCESTRAL SPECIES	65	ENSGT00390000018199.a.e	ENSGT00390000003316.c.b.a.f.a	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000159075.B	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.g ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT01030000234848.a	ENSGT00940000154862.y.d	ENSGT00390000016478.e.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.e	ENSGT01030000234517.H.a.e	ENSGT00940000156927.`b.a.d	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000009816.b
Coho salmon	MODERN SPECIES	3	ENSOKIG00005002172	PLEKHG3 (ENSOKIG00005002115)	ENSOKIG00005002066	ENSOKIG00005002043	ENSOKIG00005002024	ENSOKIG00005002003	ENSOKIG00005001971	myh6 (ENSOKIG00005001957)	ENSOKIG00005047138	ENSOKIG00005047122	ENSOKIG00005047112	ENSOKIG00005047108	KIF26A (ENSOKIG00005047078)	ENSOKIG00005047056	ENSOKIG00005047050	ckbb (ENSOKIG00005047033) ##22	MARK3 (ENSOKIG00005046912)	eif5 (ENSOKIG00005046854)	ENSOKIG00005046840	ENSOKIG00005046819	ENSOKIG00005046812	ENSOKIG00005045073	ENSOKIG00005042636	polr3a (ENSOKIG00005042374)	QRFPR (ENSOKIG00005042320)	si:dkeyp-72h1.1 (ENSOKIG00005042301)	ENSOKIG00005042290	cdc42bpb (ENSOKIG00005041402)	ENSOKIG00005041128	ENSOKIG00005039927	ENSOKIG00005039544
Chinook salmon	MODERN SPECIES	29	erh (ENSOTSG00005001051)	paplnb (ENSOTSG00005001044)	ENSOTSG00005001036	PLEKHG3 (ENSOTSG00005001030)	spint1b (ENSOTSG00005001021)	ENSOTSG00005001015	ENSOTSG00005001011	pak6b (ENSOTSG00005001005)	myh6 (ENSOTSG00005001001)	ENSOTSG00005000997	zbtb1 (ENSOTSG00005000995)	ENSOTSG00005000994	KIF26A (ENSOTSG00005000983)	prph2lb (ENSOTSG00005000974)	ENSOTSG00005000971	ckbb (ENSOTSG00005000965) ##22	ENSOTSG00005000952	eif5 (ENSOTSG00005000871)	ENSOTSG00005000867	tnfaip2a (ENSOTSG00005000836)	ENSOTSG00005000679	ENSOTSG00005000531	CCDC85C (ENSOTSG00005000516)	CCNK (ENSOTSG00005000512)	ENSOTSG00005000511	ENSOTSG00005000508	chrm5b (ENSOTSG00005000506)	emc7b (ENSOTSG00005000504)	katnbl1 (ENSOTSG00005000502)	THBS1 (ENSOTSG00005000501)	gpr176 (ENSOTSG00005000499)
Rainbow trout	MODERN SPECIES	29	paplnb (ENSOMYG00000004534)	ENSOMYG00000004507	ENSOMYG00000066911	ENSOMYG00000004426	ENSOMYG00000004330	ENSOMYG00000056790	ENSOMYG00000076150	ENSOMYG00000053095	ENSOMYG00000004222	ENSOMYG00000004200	ENSOMYG00000004170	ENSOMYG00000004040	ENSOMYG00000003990	ENSOMYG00000003876	ENSOMYG00000003848	CKB (ENSOMYG00000003805) ##22	ENSOMYG00000075096	MARK3 (ENSOMYG00000003515)	eif5 (ENSOMYG00000003370)	ENSOMYG00000003242	tnfaip2a (ENSOMYG00000003176)	ENSOMYG00000065169	ENSOMYG00000077507	si:dkeyp-72h1.1 (ENSOMYG00000058003)	cdc42bpb (ENSOMYG00000003002)	ENSOMYG00000002119	ENSOMYG00000002874	ENSOMYG00000054358	ENSOMYG00000002390	ENSOMYG00000049257	ccdc85cb (ENSOMYG00000001879)
Huchen	MODERN SPECIES	5360																ckbb (ENSHHUG00000030888) ##22	mark3b (ENSHHUG00000030999)
Salmoninae	ANCESTRAL SPECIES	622												ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.g ##22	ENSGT00940000154862.x.a.b.a.a	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b.h ##22	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478.e.a	ENSGT00940000154862.y.d	ENSGT00390000016478.e.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e	ENSGT00940000156927.`b.a	ENSGT01030000234613.b.a.a.c.b.e
Huchen	MODERN SPECIES	539								smek1 (ENSHHUG00000048028)	erh (ENSHHUG00000047994)	paplnb (ENSHHUG00000047985)	ENSHHUG00000047981	zbtb1 (ENSHHUG00000047977)	ENSHHUG00000047975	ENSHHUG00000047703	ENSHHUG00000047696	ckbb (ENSHHUG00000047612) ##22	mark3b (ENSHHUG00000047152)	eif5 (ENSHHUG00000047069)
Salmoninae_a	ANCESTRAL SPECIES	104	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000173579	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h ##22	ENSGT01030000234848.b	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478.e.a	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f	ENSGT00530000063867.a.a.db	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00390000009415.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h ##22	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478.e.a	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f	ENSGT00530000063867.a.a.db	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a	ENSGT00940000161652.b.b.p.b.b	ENSGT00940000157701.k.b	ENSGT00940000156464.mb.a.b	ENSGT00940000156714.b.f
Atlantic salmon	MODERN SPECIES	25	xkr5a (ENSSSAG00000007629)	ENSSSAG00000114918	tram2 (ENSSSAG00000007615)	ENSSSAG00000007605	ENSSSAG00000100736	ENSSSAG00000032979	mycn (ENSSSAG00000107853)	smek1 (ENSSSAG00000002811)	erh (ENSSSAG00000003730)	ENSSSAG00000088042	paplnb (ENSSSAG00000094083)	ENSSSAG00000115651	zbtb1 (ENSSSAG00000103681)	ENSSSAG00000003760	MTHFD1 (ENSSSAG00000003941)	CKB (ENSSSAG00000007969) ##22	ENSSSAG00000100701	ENSSSAG00000008124	ENSSSAG00000104602	eif5 (ENSSSAG00000015636)	ENSSSAG00000094877	cdc42bpb (ENSSSAG00000022058)	ENSSSAG00000067479	ENSSSAG00000087136	ENSSSAG00000120792	ENSSSAG00000067588	ENSSSAG00000072133	ENSSSAG00000072139	ENSSSAG00000121038	ENSSSAG00000088329	sox11b (ENSSSAG00000072143)
River trout	MODERN SPECIES		SIM1 (ENSSTUG00000046997)	ENSSTUG00000046095	lin28b (ENSSTUG00000046034)	prep (ENSSTUG00000045834)	ENSSTUG00000045809	xkr5a (ENSSTUG00000045797)	tram2 (ENSSTUG00000045717)	ENSSTUG00000045687	mrpl19 (ENSSTUG00000045658)	mycn (ENSSTUG00000045646)	smek1 (ENSSTUG00000044510)	erh (ENSSTUG00000044468)	paplnb (ENSSTUG00000044428)	ENSSTUG00000044421	ENSSTUG00000039464	ckbb (ENSSTUG00000039323) ##22	mark3b (ENSSTUG00000038826)	eif5 (ENSSTUG00000038697)	si:dkeyp-72h1.1 (ENSSTUG00000038664)	cdc42bpb (ENSSTUG00000037407)	si:dkey-177p2.6 (ENSSTUG00000037358)	cdca4 (ENSSTUG00000037357)	ENSSTUG00000037355	ahsa1a (ENSSTUG00000037323)	sel1l (ENSSTUG00000034678)	ENSSTUG00000034582	nudt14 (ENSSTUG00000034575)	sox11b (ENSSTUG00000034561)	ENSSTUG00000034552	ENSSTUG00000034533	id2b (ENSSTUG00000034522)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT00940000153556.A.l.b	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h ##22	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478.e.a	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000154045.b.d.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00940000162441.j.b.a.b.b.a.a.b.b.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.a.b.a.a.a.b.a.a	ENSGT01030000234559.b	ENSGT00730000111078.d
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000019653	ENSOMYG00000019544	ENSOMYG00000019419	ENSOMYG00000019359	ENSOMYG00000019353	xkr5a (ENSOMYG00000019346)	ENSOMYG00000019196	ENSOMYG00000019154	mycn (ENSOMYG00000019114)	smek1 (ENSOMYG00000018278)	erh (ENSOMYG00000018223)	paplnb (ENSOMYG00000018193)	zbtb1 (ENSOMYG00000018187)	ENSOMYG00000018183	MTHFD1 (ENSOMYG00000017946)	CKB (ENSOMYG00000017756) ##22	ENSOMYG00000017740	ENSOMYG00000016375	ENSOMYG00000058917	ENSOMYG00000028310	eif5 (ENSOMYG00000016280)	ENSOMYG00000016261	cdc42bpb (ENSOMYG00000011129)	ENSOMYG00000010466	ENSOMYG00000066455	ENSOMYG00000010435	ENSOMYG00000008679	ENSOMYG00000007527	ENSOMYG00000007499	ENSOMYG00000007436	ENSOMYG00000066454
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT00940000153556.A.l.b	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00990000211308	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h ##22	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478.e.a	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000154045.b.d.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00950000183169.A.a.a.a.b.a.b.a.b.a.a.b.a	ENSGT00940000162441.j.b.a.b.b.a.a.b.b.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.a.b.a.a.a.b.a.a	ENSGT01030000234559.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	22	sh3bp5la (ENSOTSG00005005685)	ENSOTSG00005000530	tnfb (ENSOTSG00005000469)	ENSOTSG00005000467	ENSOTSG00005000466	bag6 (ENSOTSG00005000463)	tspan13a (ENSOTSG00005000458)	ankmy2a (ENSOTSG00005000436)	sostdc1a (ENSOTSG00005000430)	MEOX2 (ENSOTSG00005000429)	agmo (ENSOTSG00005000286)	DGKB (ENSOTSG00005000283)	ENSOTSG00005000282	ENSOTSG00005000281	ENSOTSG00005000279	ckbb (ENSOTSG00005000276) ##22	mark3b (ENSOTSG00005000274)	eif5 (ENSOTSG00005000268)	si:dkeyp-72h1.1 (ENSOTSG00005029386)	cdc42bpb (ENSOTSG00005028592)	cdca4 (ENSOTSG00005028591)	ENSOTSG00005028590	ENSOTSG00005028589	ahsa1a (ENSOTSG00005028580)	sel1l (ENSOTSG00005022290)	nudt14 (ENSOTSG00005022285)	ENSOTSG00005022283	ENSOTSG00005022282	ENSOTSG00005022280	ENSOTSG00005022279	ENSOTSG00005022277
Chinook salmon	MODERN SPECIES	2891																ckbb (ENSOTSG00005024160) ##22	mark3b (ENSOTSG00005024169)	eif5 (ENSOTSG00005024173)	si:dkeyp-72h1.1 (ENSOTSG00005024279)	cdc42bpb (ENSOTSG00005024280)	cdca4 (ENSOTSG00005024956)	ENSOTSG00005024957	ahsa1a (ENSOTSG00005024958)	sel1l (ENSOTSG00005024966)	nudt14 (ENSOTSG00005032629)	ENSOTSG00005032630	ENSOTSG00005032631	ENSOTSG00005032632	ENSOTSG00005032707	ENSOTSG00005032709	ENSOTSG00005032710
Coho salmon	MODERN SPECIES	13	ENSOKIG00005018516	RUVBL1 (ENSOKIG00005018508)	xkr5a (ENSOKIG00005018502)	TRAM2 (ENSOKIG00005018456)	ENSOKIG00005018435	mycn (ENSOKIG00005018427)	ENSOKIG00005018312	erh (ENSOKIG00005018282)	paplnb (ENSOKIG00005018269)	ENSOKIG00005018255	zbtb1 (ENSOKIG00005018245)	ENSOKIG00005018243	ENSOKIG00005018239	MTHFD1 (ENSOKIG00005013727)	ENSOKIG00005029571	CKB (ENSOKIG00005029444) ##22	ENSOKIG00005029432	MARK3 (ENSOKIG00005029324)	EIF5 (ENSOKIG00005029238)	ENSOKIG00005029213
Northern pike	MODERN SPECIES	22	zgc:173709 (ENSELUG00000016671)	sptlc1 (ENSELUG00000016744)	ROR2 (ENSELUG00000016826)	nfil3 (ENSELUG00000016858)	auh (ENSELUG00000016935)	syk (ENSELUG00000016990)	DIRAS2 (ENSELUG00000017020)	ENSELUG00000017059	LYZ (ENSELUG00000017112)	PAM (ENSELUG00000017536)	st8sia4 (ENSELUG00000017552)	ENSELUG00000017568	chd1 (ENSELUG00000017677)	tmem179aa (ENSELUG00000000705)	prph2lb (ENSELUG00000000711)	ckbb (ENSELUG00000017747) ##22	mark3b (ENSELUG00000017834)	eif5 (ENSELUG00000017892)	tnfaip2a (ENSELUG00000017931)	si:dkeyp-72h1.1 (ENSELUG00000017949)	cdc42bpb (ENSELUG00000018094)	cyp46a1.3 (ENSELUG00000018130)	ccdc85cb (ENSELUG00000018846)	ccnk (ENSELUG00000018878)	ENSELUG00000018914	papola (ENSELUG00000018972)	ACTA1 (ENSELUG00000019066)	ENSELUG00000019201	SCG5 (ENSELUG00000019157)	GREM1 (ENSELUG00000029656)	FMN1 (ENSELUG00000019232)
Otomorpha	ANCESTRAL SPECIES	380		ENSGT00940000156568.q	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712
Otophysi	ANCESTRAL SPECIES	12						ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478.c.b	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b.g	ENSGT01030000234613.b.a.b.h	ENSGT00940000164834.a	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb
Characiphysae	ANCESTRAL SPECIES	38	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT01030000234848	ENSGT00940000153463.a.c.b	ENSGT01100000263794	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb	ENSGT00940000165916.e.b	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00530000063876.a	ENSGT00940000159420	ENSGT00390000000709
Channel catfish	MODERN SPECIES	17	Mut (ENSIPUG00000018835)	opn8b (ENSIPUG00000018819)	runx2b (ENSIPUG00000018779)	clic5b (ENSIPUG00000018758)	mark3b (ENSIPUG00000018616)	DAAM1 (ENSIPUG00000018404)	l3hypdh (ENSIPUG00000018376)	ENSIPUG00000018352	ENSIPUG00000018321	esr2a (ENSIPUG00000018308)	jag2 (ENSIPUG00000018128)	nudt14 (ENSIPUG00000018103)	btbd6b (ENSIPUG00000017933)	brf1b (ENSIPUG00000017884)	ENSIPUG00000017835	CKB (ENSIPUG00000017754) ##22	ppp1r13b (ENSIPUG00000017609)	atp5mj (ENSIPUG00000017590)	ENSIPUG00000017584	rtn1b (ENSIPUG00000017525)	ppm1ab (ENSIPUG00000017490)	six6b (ENSIPUG00000017480)	six1b (ENSIPUG00000017473)	six4b (ENSIPUG00000017456)	Prkch (ENSIPUG00000017377)	hif1ab (ENSIPUG00000017139)	snapc1a (ENSIPUG00000017089)	SGPP1 (ENSIPUG00000017055)	PPP2R5E (ENSIPUG00000016934)	rhoj (ENSIPUG00000016909)	kcnh5a (ENSIPUG00000016865)
Characiphysae_b	ANCESTRAL SPECIES	39	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.pb.a	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00390000002089.b	ENSGT00940000156568.q	ENSGT01100000263794	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.b	ENSGT00940000165916.e.b	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00530000063876.a
Electric eel	MODERN SPECIES	172										jag2b (ENSEEEG00000008094)	nudt14 (ENSEEEG00000008083)	btbd6b (ENSEEEG00000008080)	brf1b (ENSEEEG00000008079)	xrcc3 (ENSEEEG00000008076)	ENSEEEG00000008074	ckbb (ENSEEEG00000007997) ##22	ppp1r13bb (ENSEEEG00000007989)	ENSEEEG00000007982	ndc80 (ENSEEEG00000007974)	ENSEEEG00000007971	ttc8 (ENSEEEG00000007880)	UBR7 (ENSEEEG00000007876)	BTBD7 (ENSEEEG00000007873)	ENSEEEG00000007872	asb2b (ENSEEEG00000007871)	OTUB2 (ENSEEEG00000007870)	DDX24 (ENSEEEG00000007868)	SERPINA10 (ENSEEEG00000007863)	atxn3 (ENSEEEG00000007826)	ENSEEEG00000007824	fam98b (ENSEEEG00000007822)
Characoidei	ANCESTRAL SPECIES	21												ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00390000002089.b	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.a	ENSGT00940000165916.e.a	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e	ENSGT00940000156540.b
Red-bellied piranha	MODERN SPECIES	170														nudt14 (ENSPNAG00000006493)	jag2b (ENSPNAG00000028481)	ckbb (ENSPNAG00000028315) ##22	ENSPNAG00000028271	ppp1r13bb (ENSPNAG00000028253)	atp5mj (ENSPNAG00000028169)	ENSPNAG00000028152	ENSPNAG00000028121	ppm1ab (ENSPNAG00000005168)	six6b (ENSPNAG00000028053)	six1b (ENSPNAG00000028036)	six4b (ENSPNAG00000004294)	prkchb (ENSPNAG00000028009)	hif1ab (ENSPNAG00000004279)	snapc1a (ENSPNAG00000027851)	SGPP1 (ENSPNAG00000027831)	ppp2r5ea (ENSPNAG00000004260)	rhoj (ENSPNAG00000027700)
Mexicana tetra	MODERN SPECIES	18	psma8 (ENSAMXG00000038711)	ENSAMXG00000035866	clic5b (ENSAMXG00000035157)	mark3b (ENSAMXG00000001388)	daam1b (ENSAMXG00000001378)	L3HYPDH (ENSAMXG00000032989)	nudt14 (ENSAMXG00000029131)	jag2b (ENSAMXG00000020545)	esr2a (ENSAMXG00000036234)	ENSAMXG00000029675	ENSAMXG00000038470	btbd6b (ENSAMXG00000036054)	brf1b (ENSAMXG00000020489)	xrcc3 (ENSAMXG00000020479)	ENSAMXG00000032659	ckbb (ENSAMXG00000001460) ##22	ppp1r13bb (ENSAMXG00000020459)	ENSAMXG00000034131	ENSAMXG00000020448	rtn1b (ENSAMXG00000039324)	ppm1ab (ENSAMXG00000041890)	six6b (ENSAMXG00000034914)	six1b (ENSAMXG00000019354)	six4b (ENSAMXG00000019352)	prkchb (ENSAMXG00000019350)	hif1ab (ENSAMXG00000019342)	ENSAMXG00000035283	SGPP1 (ENSAMXG00000032515)	ppp2r5ea (ENSAMXG00000030264)	rhoj (ENSAMXG00000043729)	kcnh5a (ENSAMXG00000019312)
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00940000156710	ENSGT00500000044920	ENSGT00390000005261	ENSGT00940000157580.a.a	ENSGT00510000048726	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a.a.b	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00940000153463.a.c.b	ENSGT01060000248685	ENSGT00940000174626.b	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.b	ENSGT00940000165916.f	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e.b	ENSGT00940000156540.b	ENSGT00940000161329.c	ENSGT00940000160303.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	121	ENSGT00940000156710.z.a	ENSGT00500000044920.d	ENSGT00390000005261.c.b	ENSGT00940000157580.a.a.a	ENSGT00510000048726.c	ENSGT00940000156452.a.a.c	ENSGT00390000002032	ENSGT00950000182996.b.a.a.b.d.a.f.b.b.a	ENSGT00940000154656.ob.b.d	ENSGT00940000156116.B.b	ENSGT00940000164854.b.f.a.a.b	ENSGT00940000154045.b.e.a	ENSGT00390000010349.a.a.a.b.b	ENSGT00940000155720.c.a.d	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b.i ##22	ENSGT00940000153463.a.c.b.a	ENSGT01100000263794.b	ENSGT00390000002089.b	ENSGT00940000155077.u.a	ENSGT00940000154832.db.a.b	ENSGT00940000160091.f.b.b	ENSGT00940000156487.bb.a.b	ENSGT00940000165916.e.a.a	ENSGT00940000158220.p.b	ENSGT00940000156774.ib.a	ENSGT00390000018691.d	ENSGT00940000158836.a.b.b	ENSGT01030000234620.a.b.a.k.b	ENSGT00940000159098.e.b.b	ENSGT00940000156540.b.a
Cyprininae_a	ANCESTRAL SPECIES	177											ENSGT00940000164854.b.f.a.a.b	ENSGT00940000154045.b.e.a	ENSGT00390000010349.a.a.a.b.b	ENSGT00940000155720.c.a.d	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b.i ##22	ENSGT00940000153463.a.c.b.a	ENSGT01100000263794.b	ENSGT00940000155077.u.a	ENSGT00940000154832.db.a.b	ENSGT00940000160091.f.b.b	ENSGT00940000156487.bb.a.b	ENSGT00940000165916.e.a.a	ENSGT00940000158220.p.b	ENSGT00940000156774.ib.a	ENSGT00390000018691.d	ENSGT00940000158836.a.b.b	ENSGT01030000234620.a.b.a.k.b	ENSGT00940000159098.e.b.b	ENSGT00940000156540.b.a	ENSGT00940000157269.a.a.s.b
Common carp reference	MODERN SPECIES	34	tmem165 (ENSCCRG00000064973)	clocka (ENSCCRG00000003591)	ENSCCRG00000075492	nmu (ENSCCRG00000001225)	daam1b (ENSCCRG00000033411)	ENSCCRG00000062727	ENSCCRG00000033523	ENSCCRG00000002648	ENSCCRG00000066797	esr2a (ENSCCRG00000006684)	jag2b (ENSCCRG00000007251)	nudt14 (ENSCCRG00000074497)	ENSCCRG00000024274	btbd6b (ENSCCRG00000024293)	xrcc3 (ENSCCRG00000024286)	ckbb (ENSCCRG00000072264) ##22	ppp1r13bb (ENSCCRG00000024077)	ENSCCRG00000073879	ENSCCRG00000022324	rtn1b (ENSCCRG00000008020)	ppm1ab (ENSCCRG00000057816)	six6b (ENSCCRG00000082349)	six1b (ENSCCRG00000079734)	six4b (ENSCCRG00000053055)	prkchb (ENSCCRG00000056510)	hif1ab (ENSCCRG00000010974)	snapc1a (ENSCCRG00000012742)	ENSCCRG00000012746	ppp2r5ea (ENSCCRG00000013038)	rhoj (ENSCCRG00000067801)	kcnh5a (ENSCCRG00000013911)
Golden-line barbel	MODERN SPECIES	110													btbd6b (ENSSGRG00000032117)	brf1b (ENSSGRG00000032116)	xrcc3 (ENSSGRG00000032115)	ckbb (ENSSGRG00000031468) ##22	ppp1r13bb (ENSSGRG00000031387)	ENSSGRG00000031381	rtn1b (ENSSGRG00000031379)	ppm1ab (ENSSGRG00000031363)	six6b (ENSSGRG00000031360)	six1b (ENSSGRG00000031356)	six4b (ENSSGRG00000031355)	prkchb (ENSSGRG00000031273)	hif1ab (ENSSGRG00000030375)	snapc1a (ENSSGRG00000030355)	ENSSGRG00000030354	ppp2r5ea (ENSSGRG00000030332)	rhoj (ENSSGRG00000030331)	kcnh5a (ENSSGRG00000030329)	ptk2bb (ENSSGRG00000029904)
Goldfish	MODERN SPECIES	12	enpp5 (ENSCARG00000013541)	fam167ab (ENSCARG00000013544)	ccm2 (ENSCARG00000013551)	xkr6b (ENSCARG00000013592)	mtmr9 (ENSCARG00000013598)	tdh (ENSCARG00000013607)	pinx1 (ENSCARG00000013617)	sox7 (ENSCARG00000013623)	ENSCARG00000013629	ENSCARG00000013637	ENSCARG00000013802	nudt14 (ENSCARG00000013806)	brf1b (ENSCARG00000013813)	btbd6b (ENSCARG00000013828)	xrcc3 (ENSCARG00000013838)	ckbb (ENSCARG00000013868) ##22	ppp1r13bb (ENSCARG00000013976)	ENSCARG00000015508	RD3L (ENSCARG00000015509)	rtn1b (ENSCARG00000015516)	ppm1ab (ENSCARG00000015535)	six6b (ENSCARG00000015540)	six1b (ENSCARG00000015546)	six4b (ENSCARG00000015549)	prkchb (ENSCARG00000015562)	hif1ab (ENSCARG00000015653)	snapc1a (ENSCARG00000018630)	SGPP1 (ENSCARG00000018644)	ppp2r5ea (ENSCARG00000018693)	RHOJ (ENSCARG00000020157)	kcnh5a (ENSCARG00000020186)
Cyprininae	ANCESTRAL SPECIES	101	ENSGT00940000155626.ld.a.a	ENSGT00940000156710.z.b	ENSGT00500000044920.c	ENSGT00390000005261.d	ENSGT00940000157580.a.a.b	ENSGT00510000048726.d	ENSGT00940000156452.a.a.d	ENSGT00940000154656.ob.b.c.b	ENSGT00940000156116.B.a	ENSGT00940000164854.b.f.b	ENSGT00940000166988	ENSGT00390000010349.a.a.b	ENSGT00940000155720.c.a.c	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a.a.b.a	ENSGT00950000182772.A.a.b.`b.b.j ##22	ENSGT00940000153463.a.c.b.b	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000174626.a	ENSGT00940000155077.u.b	ENSGT00940000154832.db.a.a	ENSGT00940000160091.f.b.a	ENSGT00940000156487.bb.a.a	ENSGT00940000165916.e.a.b	ENSGT00940000158220.p.a	ENSGT00940000156774.ib.b	ENSGT00940000158836.a.b.a	ENSGT01030000234620.a.b.a.k.a	ENSGT00940000159098.e.b.a.a	ENSGT00940000156540.b.b
Cyprininae_a	ANCESTRAL SPECIES	34	ENSGT00940000155626.ld.a.a	ENSGT00940000156710.z.b	ENSGT00500000044920.c	ENSGT00390000005261.d	ENSGT00940000157580.a.a.b	ENSGT00510000048726.d	ENSGT00940000156452.a.a.d	ENSGT00940000154656.ob.b.c.a	ENSGT00940000156116.B.a	ENSGT00940000164854.b.f.b	ENSGT00940000166988	ENSGT00390000010349.a.a.b	ENSGT00940000155720.c.a.c	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a.a.b.a	ENSGT00950000182772.A.a.b.`b.b.j ##22	ENSGT00940000153463.a.c.b.b	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000155077.u.b	ENSGT00940000154832.db.a.a	ENSGT00940000160091.f.b.a	ENSGT00940000156487.bb.a.a	ENSGT00940000165916.e.a.b	ENSGT00940000158220.p.a	ENSGT00940000156774.ib.b	ENSGT00940000158836.a.b.a	ENSGT01030000234620.a.b.a.k.a	ENSGT00940000159098.e.b.a.a	ENSGT00940000156540.b.b	ENSGT00940000157269.a.a.s.a
Common carp reference	MODERN SPECIES	28	clocka (ENSCCRG00000023096)	nmu (ENSCCRG00000015667)	daam1b (ENSCCRG00000036171)	ENSCCRG00000070276	ENSCCRG00000065747	ENSCCRG00000076845	ENSCCRG00000009170	esr2a (ENSCCRG00000021944)	jag2b (ENSCCRG00000022420)	ENSCCRG00000055228	nudt14 (ENSCCRG00000076961)	btbd6b (ENSCCRG00000030019)	ENSCCRG00000030013	ENSCCRG00000030004	brf1b (ENSCCRG00000055583)	ckbb (ENSCCRG00000023971) ##22	ppp1r13bb (ENSCCRG00000027331)	ENSCCRG00000008044	rtn1b (ENSCCRG00000012689)	ppm1ab (ENSCCRG00000012703)	six6b (ENSCCRG00000080206)	six1b (ENSCCRG00000012712)	six4b (ENSCCRG00000012164)	prkchb (ENSCCRG00000054998)	hif1ab (ENSCCRG00000012389)	ENSCCRG00000012973	ppp2r5ea (ENSCCRG00000012775)	rhoj (ENSCCRG00000078732)	kcnh5a (ENSCCRG00000011674)	ptk2bb (ENSCCRG00000044551)	ENSCCRG00000003040
Golden-line barbel	MODERN SPECIES	720						ENSSGRG00000020733	esr2a (ENSSGRG00000020682)	jag2b (ENSSGRG00000019011)	ENSSGRG00000018975	ENSSGRG00000018973	ENSSGRG00000018969	btbd6b (ENSSGRG00000018967)	brf1b (ENSSGRG00000018960)	ENSSGRG00000018957	xrcc3 (ENSSGRG00000018956)	ckbb (ENSSGRG00000018336) ##22	ppp1r13bb (ENSSGRG00000017666)	ENSSGRG00000017616	ENSSGRG00000017614	rtn1b (ENSSGRG00000017537)	ppm1ab (ENSSGRG00000017535)
Goldfish	MODERN SPECIES	39	ENSCARG00000022525	ENSCARG00000022530	ENSCARG00000022534	ENSCARG00000022542	ENSCARG00000022546	ENSCARG00000022554	ENSCARG00000022559	ENSCARG00000022566	esr2a (ENSCARG00000022578)	jag2b (ENSCARG00000022626)	nudt14 (ENSCARG00000022714)	ENSCARG00000022727	brf1b (ENSCARG00000022748)	btbd6b (ENSCARG00000022849)	ENSCARG00000022857	ckbb (ENSCARG00000022889) ##22	ppp1r13bb (ENSCARG00000022933)	ENSCARG00000023437	ENSCARG00000023440	rtn1b (ENSCARG00000023450)	ppm1ab (ENSCARG00000023501)	six6b (ENSCARG00000023510)	six1b (ENSCARG00000023531)	six4b (ENSCARG00000023547)	prkchb (ENSCARG00000023575)	hif1ab (ENSCARG00000023893)	SGPP1 (ENSCARG00000026369)	ppp2r5ea (ENSCARG00000026374)	ENSCARG00000026394	ENSCARG00000026400	ENSCARG00000026411
Zebrafish	MODERN SPECIES	12	kita (ENSDARG00000043317)	kdr (ENSDARG00000017321)	srd5a3 (ENSDARG00000043307)	tmem165 (ENSDARG00000034600)	clocka (ENSDARG00000011703)	nmu (ENSDARG00000043299)	daam1b (ENSDARG00000009689)	syne2a (ENSDARG00000030107)	esr2a (ENSDARG00000016454)	jag2b (ENSDARG00000021389)	nudt14 (ENSDARG00000062335)	ENSDARG00000094224	btbd6b (ENSDARG00000032369)	brf1b (ENSDARG00000005002)	xrcc3 (ENSDARG00000017928)	ckbb (ENSDARG00000043257) ##22	ppp1r13bb (ENSDARG00000009142)	atp5mj (ENSDARG00000092873)	ENSDARG00000091135	rtn1b (ENSDARG00000021143)	ENSDARG00000092770	ppm1ab (ENSDARG00000043250)	six6b (ENSDARG00000031316)	six1b (ENSDARG00000026473)	six4b (ENSDARG00000031983)	prkchb (ENSDARG00000043243)	hif1ab (ENSDARG00000034293)	snapc1a (ENSDARG00000029569)	ENSDARG00000079369	ppp2r5ea (ENSDARG00000015474)	rhoj (ENSDARG00000020250)
Clupeiformes	ANCESTRAL SPECIES	208	ENSGT00940000154832.db.a	ENSGT00940000155077.u	ENSGT00390000002089.b	ENSGT01060000248685	ENSGT00940000153463.a.c.b	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053	ENSGT00950000182772.A.a.b.`b.b ##22	ENSGT00970000193712	ENSGT00940000154862.x.a.b	ENSGT00940000156406.b	ENSGT00940000166083	ENSGT01100000263524.D.d	ENSGT01100000263524.C	ENSGT00390000011892	ENSGT00940000153311.a.b.b	ENSGT00390000001660	ENSGT00390000005318.b.b.a	ENSGT00520000055567.a.b
Atlantic herring	MODERN SPECIES	6	atp5mj (ENSCHAG00000016255)	ppp1r13bb (ENSCHAG00000015677)	daam1b (ENSCHAG00000015238)	L3HYPDH (ENSCHAG00000015203)	ENSCHAG00000015009	esr2a (ENSCHAG00000014970)	jag2b (ENSCHAG00000013621)	nudt14 (ENSCHAG00000013575)	ENSCHAG00000013527	btbd6b (ENSCHAG00000013494)	ENSCHAG00000013429	brf1b (ENSCHAG00000013246)	xrcc3 (ENSCHAG00000013229)	ENSCHAG00000013223	ENSCHAG00000013202	ckbb (ENSCHAG00000013096) ##22	mark3b (ENSCHAG00000010879)	clic5b (ENSCHAG00000010764)	runx2b (ENSCHAG00000010414)	opn8a (ENSCHAG00000010336)	ENSCHAG00000010115	ENSCHAG00000010059	ENSCHAG00000010038	ccl38a.4 (ENSCHAG00000010031)	ENSCHAG00000010001	ENSCHAG00000009978	stum (ENSCHAG00000009964)	ITPKB (ENSCHAG00000009662)	coq8aa (ENSCHAG00000009242)	ENSCHAG00000009219	ENSCHAG00000009192
Denticle herring	MODERN SPECIES	5	ppm1ab (ENSDCDG00000031717)	rtn1b (ENSDCDG00000031731)	ENSDCDG00000031734	atp5mj (ENSDCDG00000031737)	ppp1r13bb (ENSDCDG00000031797)	ENSDCDG00000032589	daam1b (ENSDCDG00000032594)	L3HYPDH (ENSDCDG00000032657)	ENSDCDG00000032659	esr2a (ENSDCDG00000032666)	jag2b (ENSDCDG00000032719)	nudt14 (ENSDCDG00000032725)	brf1b (ENSDCDG00000032728)	btbd6b (ENSDCDG00000032750)	xrcc3 (ENSDCDG00000032752)	ckbb (ENSDCDG00000032753) ##22	ENSDCDG00000032754	mark3b (ENSDCDG00000032789)	clic5b (ENSDCDG00000033549)	runx2b (ENSDCDG00000033553)	opn8a (ENSDCDG00000033557)	opn8b (ENSDCDG00000033560)	mmut (ENSDCDG00000033574)	fkbp1b (ENSDCDG00000033957)	wdcp (ENSDCDG00000003187)	mfsd2b (ENSDCDG00000003217)	UBXN2A (ENSDCDG00000003415)	rsph9 (ENSDCDG00000003423)	mrps18a (ENSDCDG00000003430)	vegfab (ENSDCDG00000003439)	naga (ENSDCDG00000003459)
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.ab ##22
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab ##22	ENSGT00940000154862.x.b	ENSGT00940000154862.x.a.b.a.b	ENSGT00390000016478	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000164834.a	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000156671
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.ab ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.ab ##22
Huchen	MODERN SPECIES	8765																ENSHHUG00000012880 ##22
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.ab ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.ab ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639	ENSGT00940000155555	ENSGT00390000008212	ENSGT00940000158888	ENSGT00940000154239.a	ENSGT00950000182772.A.a.b.ab ##22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a ##22	ENSGT00940000154862.x.b	ENSGT00390000016478	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a	ENSGT01030000234613.b.a.b	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Tiger tail seahorse	MODERN SPECIES	43	traf3 (ENSHCOG00000021113)	rcor1 (ENSHCOG00000021111)	ENSHCOG00000021110	ENSHCOG00000021107	ENSHCOG00000021106	ENSHCOG00000021104	dkc1 (ENSHCOG00000021099)	ENSHCOG00000021094	btbd6a (ENSHCOG00000021090)	ENSHCOG00000021089	zfyve21 (ENSHCOG00000021085)	klc1a (ENSHCOG00000000881)	coa8 (ENSHCOG00000000883)	bag5 (ENSHCOG00000000886)	trmt61a (ENSHCOG00000000889)	CKB (ENSHCOG00000000893) ##22	ENSHCOG00000000895	ENSHCOG00000000896	ENSHCOG00000000039	eif5 (ENSHCOG00000000904)	vps29 (ENSHCOG00000000908)	pgrmc2 (ENSHCOG00000000911)	ENSHCOG00000000918	ENSHCOG00000000923	ahsa1b (ENSHCOG00000000941)	cdca4 (ENSHCOG00000000948)	si:dkey-177p2.6 (ENSHCOG00000000950)	ENSHCOG00000000956	ENSHCOG00000000961	ENSHCOG00000000041	ENSHCOG00000000977
Cyclostomata	ANCESTRAL SPECIES	672																ENSGT00950000182772.A.a.b ##22	ENSGT00940000154862.ab.b
Hagfish	MODERN SPECIES	607																ckbb (ENSEBUG00000002924) ##22	MARK3 (ENSEBUG00000010460)	ENSEBUG00000003226	ENSEBUG00000013959	ENSEBUG00000006752	ENSEBUG00000016687	tmem229b (ENSEBUG00000017002)	ENSEBUG00000016975	ENSEBUG00000010046	ENSEBUG00000013205	paf1 (ENSEBUG00000003008)	ENSEBUG00000000434	ENSEBUG00000001099	ENSEBUG00000008343	ENSEBUG00000009709	ENSEBUG00000001230
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.b ##22
Gnathostomata	ANCESTRAL SPECIES	59	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303	ENSGT00950000183075.a.a.a.a	ENSGT00940000160303.b	ENSGT00390000009045	ENSGT00390000000709	ENSGT00940000159420	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00390000008171	ENSGT00940000157560
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303	ENSGT00950000183075.a.a.a.a	ENSGT00940000160303.b	ENSGT00390000009045	ENSGT00390000000709	ENSGT00940000159420	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00390000008171	ENSGT00940000157560.e	ENSGT00390000005794	ENSGT00550000074910	ENSGT00940000157359	ENSGT00550000074815	ENSGT00940000179241	ENSGT00940000159967	ENSGT00940000159171	ENSGT00940000157390	ENSGT00390000001960	ENSGT00390000011270	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000158456
Actinopterygii	ANCESTRAL SPECIES	311							ENSGT00940000154922.a	ENSGT00940000154922.b	ENSGT00940000161321	ENSGT00550000074953	ENSGT00530000063629.a	ENSGT00940000155793.a.b	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00390000008171	ENSGT00940000157560.e
Neopterygii	ANCESTRAL SPECIES	270				ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.a.a	ENSGT00940000154922.a	ENSGT00940000154922.b	ENSGT00940000161321	ENSGT00550000074953	ENSGT00530000063629.a	ENSGT00940000155793.a.b	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	326					ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.a.a	ENSGT00940000154922.b.v.b	ENSGT00940000154922.b.u.b	ENSGT00940000161321	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22
Clupeocephala	ANCESTRAL SPECIES	63													ENSGT00400000022158.a	ENSGT00940000157908.g	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764	ENSGT00940000153244.A	ENSGT00950000183209.b.a.a	ENSGT00390000003866.a.a.e	ENSGT00530000064165.b	ENSGT00940000157952	ENSGT00940000180095	ENSGT00530000069620	ENSGT00390000018683	ENSGT00390000008459	ENSGT00940000157388.b.a	ENSGT00390000006176
Euteleosteomorpha	ANCESTRAL SPECIES	41	ENSGT00940000167342	ENSGT00390000006712	ENSGT00940000155423	ENSGT00940000155483.e.b	ENSGT00390000015299.a.b.b.b.c	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Protacanthopterygii	ANCESTRAL SPECIES	149	ENSGT00940000155423	ENSGT00390000006619	ENSGT00940000163420	ENSGT00940000155483.f	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764	ENSGT00950000183209.b.a.a	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b
Salmoninae	ANCESTRAL SPECIES	600											ENSGT00940000165311.b.n.a.b.b	ENSGT00550000074953.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b
Huchen	MODERN SPECIES	22	HNRNPLL (ENSHHUG00000019834)	srsf7b (ENSHHUG00000019883)	sos1 (ENSHHUG00000019930)	MAP4K3 (ENSHHUG00000020240)	tmem178a (ENSHHUG00000021050)	slc8a1a (ENSHHUG00000021054)	pgap4 (ENSHHUG00000021084)	ENSHHUG00000021092	ENSHHUG00000021106	ENSHHUG00000021115	ENSHHUG00000021120	kcnh1b (ENSHHUG00000021127)	rcor3 (ENSHHUG00000021153)	TRAF5 (ENSHHUG00000021183)	ENSHHUG00000021193	ENSHHUG00000021198 ##22	ENSHHUG00000021206	ptk7a (ENSHHUG00000021378)	soul4 (ENSHHUG00000021422)	ENSHHUG00000021436	ENSHHUG00000021572	tmem264 (ENSHHUG00000021919)	ENSHHUG00000021922
Salmoninae_a	ANCESTRAL SPECIES	121	ENSGT00400000022158.b.d.a.b	ENSGT00400000022158.b.d.a.a	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00550000074953.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000157837.d.h	ENSGT00400000022158.b.d.b	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00550000074953.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b
River trout	MODERN SPECIES	31	ENSSTUG00000016683	srfa (ENSSTUG00000016700)	eif4a3 (ENSSTUG00000016753)	ATL2 (ENSSTUG00000016870)	HNRNPLL (ENSSTUG00000017450)	srsf7b (ENSSTUG00000017606)	sos1 (ENSSTUG00000017688)	MAP4K3 (ENSSTUG00000019647)	tmem178a (ENSSTUG00000019846)	slc8a1a (ENSSTUG00000019863)	ENSSTUG00000019990	PEX6 (ENSSTUG00000020005)	kcnh1b (ENSSTUG00000020055)	rcor3 (ENSSTUG00000020360)	TRAF5 (ENSSTUG00000020552)	ENSSTUG00000020578 ##22	MARK1 (ENSSTUG00000020607)	ptk7a (ENSSTUG00000021011)	soul4 (ENSSTUG00000021853)	ENSSTUG00000021884	ENSSTUG00000021984	tmem264 (ENSSTUG00000022916)	rrp36 (ENSSTUG00000022923)	sipa1l2 (ENSSTUG00000022948)	EGLN1 (ENSSTUG00000023339)	ENSSTUG00000023359	ENSSTUG00000023372	ENSSTUG00000023399	ENSSTUG00000023410	ENSSTUG00000023463	ENSSTUG00000023473
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000114607	ENSSSAG00000000256	if4a3 (ENSSSAG00000000352)	ATL2 (ENSSSAG00000112408)	ENSSSAG00000000980	SRSF7 (ENSSSAG00000001092)	SOS1 (ENSSSAG00000001130)	MAP4K3 (ENSSSAG00000001497)	TMEM178A (ENSSSAG00000107044)	slc8a1a (ENSSSAG00000001870)	ENSSSAG00000001921	ENSSSAG00000001974	KCNH1 (ENSSSAG00000002000)	rcor3 (ENSSSAG00000002310)	TRAF5 (ENSSSAG00000002812)	ENSSSAG00000002826 ##22	ENSSSAG00000081823	ENSSSAG00000002991	ptk7a (ENSSSAG00000004365)	soul4 (ENSSSAG00000099662)	klc4 (ENSSSAG00000005429)	ENSSSAG00000037481	rrp36 (ENSSSAG00000041096)	ENSSSAG00000041186	ENSSSAG00000081907	ENSSSAG00000042803	ENSSSAG00000111546	ENSSSAG00000043147	jag1a (ENSSSAG00000043209)	s5a2 (ENSSSAG00000044549)	psen2 (ENSSSAG00000044602)
Oncorhynchus	ANCESTRAL SPECIES	101	ENSGT00940000157837.d.g.a	ENSGT00400000022158.b.d.a.b	ENSGT00400000022158.b.d.a.a	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.a	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.b	ENSGT00940000155965.b.e.b.b.a.b.a.a.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.b.b.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	108	ENSGT00940000157837.d.g.a	ENSGT00400000022158.b.d.a.b	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.e.b	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.a	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.b	ENSGT00940000155965.b.e.b.b.a.b.a.a.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.b.b.a.a.b
Chinook salmon	MODERN SPECIES	25									ENSOTSG00005009210	tmem178a (ENSOTSG00005009209)	slc8a1a (ENSOTSG00005009205)	ENSOTSG00005009201	kcnh1b (ENSOTSG00005008988)	rcor3 (ENSOTSG00005008961)	TRAF5 (ENSOTSG00005008959)	ENSOTSG00005008957 ##22	ENSOTSG00005008471	ptk7a (ENSOTSG00005008214)	soul4 (ENSOTSG00005008213)	ENSOTSG00005008110	ENSOTSG00005003609	tmem264 (ENSOTSG00005003575)	rrp36 (ENSOTSG00005003572)	sipa1l2 (ENSOTSG00005003229)	ENSOTSG00005003204	ENSOTSG00005003201	ENSOTSG00005003198	ENSOTSG00005003191	ENSOTSG00005003189	ENSOTSG00005003187	ENSOTSG00005003184
Coho salmon	MODERN SPECIES	12	EIF4A3 (ENSOKIG00005012140)	ATL2 (ENSOKIG00005011953)	ENSOKIG00005011908	HNRNPLL (ENSOKIG00005011415)	srsf7b (ENSOKIG00005011370)	SOS1 (ENSOKIG00005009100)	ENSOKIG00005008997	MAP4K3 (ENSOKIG00005008976)	TMEM178A (ENSOKIG00005008957)	slc8a1a (ENSOKIG00005008899)	ENSOKIG00005008854	ENSOKIG00005008801	KCNH1 (ENSOKIG00005008781)	rcor3 (ENSOKIG00005008711)	TRAF5 (ENSOKIG00005008668)	ENSOKIG00005008656 ##22	MARK1 (ENSOKIG00005008476)	ptk7a (ENSOKIG00005006380)	soul4 (ENSOKIG00005006264)	ENSOKIG00005006007	ENSOKIG00005008795	tmem264 (ENSOKIG00005008637)	rrp36 (ENSOKIG00005008622)	SIPA1L2 (ENSOKIG00005008310)	EGLN1 (ENSOKIG00005008238)	ENSOKIG00005008228	ENSOKIG00005008223	ENSOKIG00005008195	ENSOKIG00005008187	ENSOKIG00005008174	ENSOKIG00005008158
Rainbow trout	MODERN SPECIES	4	ATL2 (ENSOMYG00000016069)	ENSOMYG00000014920	SRSF7 (ENSOMYG00000014842)	SOS1 (ENSOMYG00000011078)	MAP4K3 (ENSOMYG00000010418)	ENSOMYG00000067680	TMEM178A (ENSOMYG00000010403)	ncx (ENSOMYG00000010351)	ENSOMYG00000052178	ENSOMYG00000010193	ENSOMYG00000065639	KCNH1 (ENSOMYG00000009951)	rcor3 (ENSOMYG00000009784)	TRAF5 (ENSOMYG00000009559)	ENSOMYG00000058723	ENSOMYG00000009523 ##22	ENSOMYG00000009435	ENSOMYG00000055394	ENSOMYG00000060588	ptk7a (ENSOMYG00000008510)	soul4 (ENSOMYG00000007872)	ENSOMYG00000007845	ENSOMYG00000053772	ENSOMYG00000007562	ENSOMYG00000006968	ENSOMYG00000064456	ENSOMYG00000053828	ENSOMYG00000006945	ENSOMYG00000006521	ENSOMYG00000005737	ENSOMYG00000005769
Northern pike	MODERN SPECIES	8	slc8a1a (ENSELUG00000017795)	ENSELUG00000029888	pgap4 (ENSELUG00000017687)	ENSELUG00000017680	tpcn3 (ENSELUG00000017670)	ENSELUG00000033076	tpcn3 (ENSELUG00000017586)	ENSELUG00000017559	slc22a7a (ENSELUG00000017464)	ENSELUG00000017447	kcnh1b (ENSELUG00000017368)	rcor3 (ENSELUG00000017304)	TRAF5 (ENSELUG00000017257)	ENSELUG00000017232	ENSELUG00000017205	ENSELUG00000017198 ##22	MARK1 (ENSELUG00000017156)	ENSELUG00000034072	ENSELUG00000017023	egln1 (ENSELUG00000016998)	sipa1l2 (ENSELUG00000016909)	rrp36 (ENSELUG00000016840)	tmem264 (ENSELUG00000016822)	ENSELUG00000016765	ENSELUG00000016543	soul4 (ENSELUG00000016467)	ptk7a (ENSELUG00000016427)	jag1a (ENSELUG00000016285)	ENSELUG00000016145	srd5a2a (ENSELUG00000016118)	psen2 (ENSELUG00000001236)
Acanthomorphata	ANCESTRAL SPECIES	226															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000155710.b	ENSGT00940000155037	ENSGT00400000022158.b	ENSGT00940000157837.d	ENSGT00940000153566.b	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00950000182886.b.a.b	ENSGT00940000157923	ENSGT00390000008808.q	ENSGT00940000156258.f.b	ENSGT01100000263524.G.f.b
Euacanthomorphacea	ANCESTRAL SPECIES	188															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f
Percomorphaceae	ANCESTRAL SPECIES	152															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000167432	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000167432	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Atherinomorphae	ANCESTRAL SPECIES	38													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000166495	ENSGT00770000121010	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000153578.A.f	ENSGT00390000017589
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000166495	ENSGT00770000121010	ENSGT00530000067736.a	ENSGT00940000177040	ENSGT00390000002789	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000153578.A.f	ENSGT00390000017589
Indian medaka	MODERN SPECIES	21	ENSOMEG00000007765	NID1 (ENSOMEG00000007786)	tbce (ENSOMEG00000007846)	rbm34 (ENSOMEG00000007902)	tomm20b (ENSOMEG00000007937)	IRF2BP2 (ENSOMEG00000007959)	ENSOMEG00000008013	ENSOMEG00000008032	ENSOMEG00000008040	H2BC7 (ENSOMEG00000008050)	ENSOMEG00000008062	ENSOMEG00000008067	kcnh1b (ENSOMEG00000008109)	rcor3 (ENSOMEG00000000661)	ENSOMEG00000008226	ENSOMEG00000008260 ##22	ENSOMEG00000008324	ATL2 (ENSOMEG00000008420)	HNRNPLL (ENSOMEG00000008453)	slc22a7a (ENSOMEG00000008469)	ENSOMEG00000000642	ENSOMEG00000000920	JAG1 (ENSOMEG00000008569)	ENSOMEG00000008587	RRP36 (ENSOMEG00000008623)	tp53bp2b (ENSOMEG00000008685)	gtpbp2b (ENSOMEG00000008753)	ENSOMEG00000008808	ENSOMEG00000008851	ENSOMEG00000008855	ENSOMEG00000008861
Javanese ricefish	MODERN SPECIES		tomm20b (ENSOJAG00000014723)	IRF2BP2 (ENSOJAG00000014745)	ENSOJAG00000014768	ENSOJAG00000014797	ENSOJAG00000014813	ENSOJAG00000014835	ENSOJAG00000014850	ENSOJAG00000014861	ENSOJAG00000014893	kcnh1b (ENSOJAG00000014926)	ENSOJAG00000015018	ENSOJAG00000015045	ENSOJAG00000015060	ENSOJAG00000015082	rcor3 (ENSOJAG00000015116)	ENSOJAG00000015267 ##22	ENSOJAG00000015364	ENSOJAG00000016656	ENSOJAG00000016669	HNRNPLL (ENSOJAG00000016717)	slc22a7a (ENSOJAG00000017051)	ENSOJAG00000017062	ENSOJAG00000017069	JAG1 (ENSOJAG00000017134)	RRP36 (ENSOJAG00000017700)	ENSOJAG00000017712	tp53bp2b (ENSOJAG00000017756)	gtpbp2b (ENSOJAG00000003655)	ENSOJAG00000003702	ENSOJAG00000003721	ENSOJAG00000003778
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00940000166495	ENSGT00770000121010	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000160206.f.a.a.a.b.a.b	ENSGT00940000153578.A.f
Chinese medaka	MODERN SPECIES	744	XPO1 (ENSOSIG00000015991)	ENSOSIG00000016472	cct4 (ENSOSIG00000016484)	ENSOSIG00000016545	ENSOSIG00000017026	ero1b (ENSOSIG00000017048)	GPR137B (ENSOSIG00000017526)	NID1 (ENSOSIG00000017538)	tbce (ENSOSIG00000017552)	rbm34 (ENSOSIG00000017558)	tomm20b (ENSOSIG00000017562)	IRF2BP2 (ENSOSIG00000017566)	kcnh1b (ENSOSIG00000017571)	rcor3 (ENSOSIG00000017647)	ENSOSIG00000017650	ENSOSIG00000017656 ##22	ENSOSIG00000017859	ENSOSIG00000020386	HNRNPLL (ENSOSIG00000020394)	ATL2 (ENSOSIG00000020415)	slc22a7a (ENSOSIG00000020477)	ENSOSIG00000020480	ENSOSIG00000020481	JAG1 (ENSOSIG00000020506)	RRP36 (ENSOSIG00000020536)	tp53bp2b (ENSOSIG00000020538)	gtpbp2b (ENSOSIG00000020543)	ENSOSIG00000020549	ENSOSIG00000020550	ENSOSIG00000020552	ENSOSIG00000020553
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000026620	ENSORLG00000001277	NID1 (ENSORLG00000001273)	tbce (ENSORLG00000001253)	rbm34 (ENSORLG00000001221)	tomm20b (ENSORLG00000029910)	ENSORLG00000001201	ENSORLG00000029583	ENSORLG00000030596	hist1h2a11 (ENSORLG00000024975)	ENSORLG00000024338	ENSORLG00000022684	ENSORLG00000001160	rcor3 (ENSORLG00000001117)	ENSORLG00000001109	ENSORLG00000001087 ##22	ENSORLG00000001076	ENSORLG00000001049	HNRNPLL (ENSORLG00000001005)	slc22a7a (ENSORLG00000000981)	ENSORLG00000025624	ENSORLG00000030418	ENSORLG00000000972	rrp36 (ENSORLG00000029500)	tp53bp2b (ENSORLG00000000954)	gtpbp2b (ENSORLG00000000909)	ENSORLG00000001338	ENSORLG00000023254	ENSORLG00000000157	ENSORLG00000030472	DDX5 (ENSORLG00000000866)
Cyprinodontiformes	ANCESTRAL SPECIES	38													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096
Aplocheiloidei	ANCESTRAL SPECIES	238															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000175262
Mangrove rivulus	MODERN SPECIES	438															ENSKMAG00000012583	ENSKMAG00000012567 ##22	ATL2 (ENSKMAG00000012500)	ENSKMAG00000012466	ENSKMAG00000012446	HNRNPLL (ENSKMAG00000012417)	ENSKMAG00000012411
Ovalentaria_B	ANCESTRAL SPECIES	72										ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148.g.b
Cichlidae	ANCESTRAL SPECIES	107													ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621
Pseudocrenilabrinae	ANCESTRAL SPECIES	106													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22
Nile tilapia	MODERN SPECIES	18	pgap4 (ENSONIG00000015988)	ENSONIG00000037310	lgalsla (ENSONIG00000031320)	slc29a2 (ENSONIG00000015993)	ENSONIG00000042072	ENSONIG00000042676	vps54 (ENSONIG00000015995)	ENSONIG00000031488	ugp2a (ENSONIG00000016000)	mdh1aa (ENSONIG00000016001)	ENSONIG00000031309	ENSONIG00000001826	KCNH1 (ENSONIG00000016131)	rcor3 (ENSONIG00000016128)	ENSONIG00000016125	ENSONIG00000016119 ##22	ENSONIG00000016118	ENSONIG00000028658	USP34 (ENSONIG00000012445)	commd1 (ENSONIG00000012443)	b3gnt2a (ENSONIG00000021044)	ENSONIG00000012442	gtpbp2b (ENSONIG00000011595)	ENSONIG00000010894	ENSONIG00000037919	ENSONIG00000016476
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	33													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000155636.b.a	ENSGT00940000153463.b.b	ENSGT00530000064271
Lyretail cichlid	MODERN SPECIES	461	ENSNBRG00000008728	ENSNBRG00000008705	mdh1aa (ENSNBRG00000008660)	vps54 (ENSNBRG00000008596)	ENSNBRG00000008568	slc29a2 (ENSNBRG00000008535)	ENSNBRG00000008514	MAL (ENSNBRG00000008436)	pgap4 (ENSNBRG00000008419)	ENSNBRG00000008400	tp53bp2b (ENSNBRG00000008370)	ENSNBRG00000008351	kcnh1b (ENSNBRG00000008331)	rcor3 (ENSNBRG00000008291)	ENSNBRG00000008238	ENSNBRG00000008209 ##22	ENSNBRG00000008167	HNRNPLL (ENSNBRG00000008133)	slc22a7a (ENSNBRG00000008097)	ENSNBRG00000008077	tpcn3 (ENSNBRG00000007966)	ENSNBRG00000007920	ENSNBRG00000007904	ENSNBRG00000007895	GRIA2 (ENSNBRG00000007840)	ENSNBRG00000007825	glrba (ENSNBRG00000007773)	ndufs8a (ENSNBRG00000007759)
Haplochromini	ANCESTRAL SPECIES	52	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a	ENSGT00940000153463.b.b.f.b	ENSGT00940000155636.b.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00530000064449.A.b.b.t	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a
Burton s mouthbrooder	MODERN SPECIES	1370																ENSHBUG00000015806 ##22	ENSHBUG00000015789	ATL2 (ENSHBUG00000015768)
Haplochromini_A	ANCESTRAL SPECIES	59										ENSGT00940000153463.b.b.f.b	ENSGT00940000155636.b.a	ENSGT01030000235581	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00530000064449.A.b.b.t	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000153463.b.b.f.a	ENSGT00530000064271
Haplochromini_B	ANCESTRAL SPECIES	47	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a	ENSGT00940000155636.b.a	ENSGT01030000235581	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00530000064449.A.b.b.t	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00490000044642.a.a.a.a.a.a.d.a.b.b.d.b.d.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005014782	ENSMZEG00005014815	ENSMZEG00005014819	ENSMZEG00005014834	ENSMZEG00005014843	ENSMZEG00005014851	ENSMZEG00005014867	ENSMZEG00005014879	ENSMZEG00005014887	ENSMZEG00005014897	tp53bp2b (ENSMZEG00005014935)	gtpbp2b (ENSMZEG00005014948)	kcnh1b (ENSMZEG00005014960)	rcor3 (ENSMZEG00005014972)	ENSMZEG00005014986	ENSMZEG00005015001 ##22	ENSMZEG00005015018	ENSMZEG00005015030	HNRNPLL (ENSMZEG00005015058)	slc22a7a (ENSMZEG00005015069)	ENSMZEG00005015082	ENSMZEG00005015086	tpcn3 (ENSMZEG00005015092)	ENSMZEG00005015107	saraf (ENSMZEG00005015121)	ENSMZEG00005015126	ENSMZEG00005015130	gria2a (ENSMZEG00005015135)	glrba (ENSMZEG00005015153)	ENSMZEG00005015164	ndufs8a (ENSMZEG00005015172)
Eastern happy	MODERN SPECIES	18	ugp2a (ENSACLG00000014321)	vps54 (ENSACLG00000014277)	ENSACLG00000014223	slc29a2 (ENSACLG00000014184)	lgalsla (ENSACLG00000014174)	MAL (ENSACLG00000014152)	pgap4 (ENSACLG00000014146)	ENSACLG00000014002	RRP36 (ENSACLG00000013982)	tp53bp2b (ENSACLG00000013896)	gtpbp2b (ENSACLG00000013857)	ENSACLG00000013848	kcnh1b (ENSACLG00000013777)	rcor3 (ENSACLG00000013414)	ENSACLG00000013405	ENSACLG00000013398 ##22	ENSACLG00000013383	ENSACLG00000013380	ENSACLG00000013354	HNRNPLL (ENSACLG00000013350)	slc22a7a (ENSACLG00000013341)	ENSACLG00000013339	ENSACLG00000013337	tpcn3 (ENSACLG00000013326)	ENSACLG00000013305	saraf (ENSACLG00000013300)	ENSACLG00000013291	ENSACLG00000013289	ENSACLG00000013286	gria2a (ENSACLG00000013254)	ENSACLG00000012969
P. nyererei	MODERN SPECIES	484	ugp2a (ENSPNYG00000018323)	vps54 (ENSPNYG00000018242)	ENSPNYG00000018201	slc29a2 (ENSPNYG00000018182)	lgalsla (ENSPNYG00000018161)	MAL (ENSPNYG00000018076)	pgap4 (ENSPNYG00000018057)	ENSPNYG00000018043	RRP36 (ENSPNYG00000018030)	tp53bp2b (ENSPNYG00000017914)	gtpbp2b (ENSPNYG00000017823)	ENSPNYG00000017807	kcnh1b (ENSPNYG00000017778)	rcor3 (ENSPNYG00000017745)	ENSPNYG00000017708	ENSPNYG00000017492 ##22	ENSPNYG00000017395	ENSPNYG00000017349	HNRNPLL (ENSPNYG00000017312)	slc22a7a (ENSPNYG00000017281)	ENSPNYG00000017269	ENSPNYG00000017254	ENSPNYG00000017245	tpcn3 (ENSPNYG00000017131)	ENSPNYG00000017055	saraf (ENSPNYG00000017035)	ENSPNYG00000017026	gria2a (ENSPNYG00000016977)	glrba (ENSPNYG00000016942)
Midas cichlid	MODERN SPECIES	308										ENSACIG00000020308	glrba (ENSACIG00000020321)	ndufs8a (ENSACIG00000020380)	gtpbp2b (ENSACIG00000020526)	tp53bp2b (ENSACIG00000020545)	ENSACIG00000020578	ENSACIG00000020628 ##22	ENSACIG00000020642	zgc:163040 (ENSACIG00000020720)	ENSACIG00000020726	ENSACIG00000020732	ENSACIG00000020742	ENSACIG00000020839	ENSACIG00000020849	ENSACIG00000020856	ENSACIG00000020864	ENSACIG00000020873
Pomacentridae	ANCESTRAL SPECIES	228										ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22
Pomacentridae_A	ANCESTRAL SPECIES	340																ENSGT00950000182772.A.b ##22	ENSGT00950000183053.B
Amphiprion	ANCESTRAL SPECIES	58	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.c.b	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000155443.d	ENSGT00440000033827	ENSGT00940000155982.e.b	ENSGT00390000013305.a.a.i.a	ENSGT00940000155727.o.b	ENSGT01030000235099	ENSGT00940000156483.h.b	ENSGT00390000008642	ENSGT00940000155634.q.b	ENSGT00940000161252.h	ENSGT00940000157012.l	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.c.a.a.a.a.a.b.b.a.b	ENSGT00950000182772.A.b ##22	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.c.a.a.a.a.a.b.b.a.a	ENSGT00950000183053.B	ENSGT00940000155621	ENSGT00390000011342	ENSGT01090000260098.A	ENSGT01100000263512.b.a	ENSGT00940000157418.a	ENSGT00940000160083	ENSGT00940000157264
Clown anemonefish	MODERN SPECIES	1584													CLDN20 (ENSAOCG00000006074)	ENSAOCG00000006102	ENSAOCG00000006207	ENSAOCG00000006249 ##22	ENSAOCG00000006312	ENSAOCG00000006332
Orange clownfish	MODERN SPECIES	2	asap2b (ENSAPEG00000019427)	cpsf3 (ENSAPEG00000019526)	ADAM17 (ENSAPEG00000019585)	taf1b (ENSAPEG00000019659)	klf11a (ENSAPEG00000019681)	RRM2 (ENSAPEG00000019696)	LGALS8 (ENSAPEG00000019733)	RRM2 (ENSAPEG00000019782)	ENSAPEG00000019830	ZDHHC14 (ENSAPEG00000019844)	tmem242 (ENSAPEG00000019855)	arid1b (ENSAPEG00000019865)	CLDN20 (ENSAPEG00000019931)	ENSAPEG00000019944	ENSAPEG00000019975	ENSAPEG00000020031 ##22	ENSAPEG00000020071	ENSAPEG00000020175	adgrg6 (ENSAPEG00000020208)	vta1 (ENSAPEG00000020283)	gje1a (ENSAPEG00000020329)	NMBR (ENSAPEG00000020347)	ENSAPEG00000020383	SLC35D3 (ENSAPEG00000020411)	pex7 (ENSAPEG00000020438)	ENSAPEG00000020465	ENSAPEG00000020476	ENSAPEG00000020588	ENSAPEG00000020670	ENSAPEG00000020732	ENSAPEG00000020757
Spiny chromis	MODERN SPECIES	2600																ENSAPOG00000003224 ##22	ENSAPOG00000003190
Bicolor damselfish	MODERN SPECIES	1491													kcnh1b (ENSSPAG00000018424)	rcor3 (ENSSPAG00000018384)	ENSSPAG00000018343	ENSSPAG00000018317 ##22	atp6v1g1 (ENSSPAG00000018297)	lmbrd2b (ENSSPAG00000018271)	ENSSPAG00000018242	ENSSPAG00000018222	myo5b (ENSSPAG00000018167)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Eupercaria	ANCESTRAL SPECIES	48														ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Eupecaria_A	ANCESTRAL SPECIES	44														ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Ballan wrasse	MODERN SPECIES	990													rcor3 (ENSLBEG00000023759)	ENSLBEG00000023807	ENSLBEG00000023835	ENSLBEG00000023862 ##22	ENSLBEG00000023904	ENSLBEG00000023950
Eupecaria_B	ANCESTRAL SPECIES	43														ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00530000064271	ENSGT00940000160148	ENSGT01100000263621	ENSGT00940000176873	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13																ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a
Large yellow croaker	MODERN SPECIES	481	lias (ENSLCRG00005004318)	rpl9 (ENSLCRG00005004323)	ENSLCRG00005004361	lias (ENSLCRG00005004366)	ENSLCRG00005004367	pgap4 (ENSLCRG00005004371)	ENSLCRG00005004372	ENSLCRG00005004376	ENSLCRG00005004382	rcor3 (ENSLCRG00005004386)	kcnh1b (ENSLCRG00005004390)	ENSLCRG00005004460	ENSLCRG00005004484	tpcn3 (ENSLCRG00005004505)	ENSLCRG00005004510	ENSLCRG00005004516 ##22	ENSLCRG00005004529	ENSLCRG00005006030	ENSLCRG00005006033	ENSLCRG00005006037	ENSLCRG00005006043	ATL2 (ENSLCRG00005006068)	ENSLCRG00005009369	ENSLCRG00005009997	ENSLCRG00005009999	ENSLCRG00005010000	ENSLCRG00005010002	ENSLCRG00005010005	JAG1 (ENSLCRG00005010017)	prpsap1 (ENSLCRG00005010137)	pik3r6a (ENSLCRG00005010267)
European seabass	MODERN SPECIES	19	ero1b (ENSDLAG00005019324)	ENSDLAG00005026597	ENSDLAG00005018501	ENSDLAG00005018606	ENSDLAG00005029065	ENSDLAG00005018807	ENSDLAG00005033986	ENSDLAG00005018217	ENSDLAG00005031674	ENSDLAG00005018022	ENSDLAG00005031979	ENSDLAG00005020624	ENSDLAG00005020654	ENSDLAG00005020895	ENSDLAG00005020536	ENSDLAG00005029416 ##22	ENSDLAG00005034665	ENSDLAG00005031488	ENSDLAG00005029866	ENSDLAG00005021886	ENSDLAG00005021903	ENSDLAG00005021927	ENSDLAG00005021966	ENSDLAG00005022023	ENSDLAG00005022058	ENSDLAG00005002952	ENSDLAG00005035039	ENSDLAG00005033140	ENSDLAG00005034954	ENSDLAG00005031829	ENSDLAG00005031957
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES		rrp36 (ENSSAUG00010008862)	ENSSAUG00010008859	ENSSAUG00010008784	ATL2 (ENSSAUG00010003833)	ENSSAUG00010002947	ENSSAUG00010002836 ##22	ENSSAUG00010002821	ENSSAUG00010018600	rcor3 (ENSSAUG00010018547)	kcnh1b (ENSSAUG00010018303)	rcor3 (ENSSAUG00010018291)	ENSSAUG00010018284	ENSSAUG00010018283	ENSSAUG00010018282	ENSSAUG00010018280	ENSSAUG00010018278 ##22	ENSSAUG00010015543	ENSSAUG00010015498	ENSSAUG00010015493	ATL2 (ENSSAUG00010012124)	ENSSAUG00010012077	ENSSAUG00010012075	ENSSAUG00010012072	ENSSAUG00010012063	ENSSAUG00010012060	tpcn3 (ENSSAUG00010011988)	ENSSAUG00010011979	ENSSAUG00010011978	pgap4 (ENSSAUG00010011977)	MAL (ENSSAUG00010011976)	slc8a1a (ENSSAUG00010011942)
Gilthead seabream	MODERN SPECIES		ENSSAUG00010012077	ATL2 (ENSSAUG00010012124)	ENSSAUG00010015493	ENSSAUG00010015498	ENSSAUG00010015543	ENSSAUG00010018278 ##22	ENSSAUG00010018280	ENSSAUG00010018282	ENSSAUG00010018283	ENSSAUG00010018284	rcor3 (ENSSAUG00010018291)	kcnh1b (ENSSAUG00010018303)	rcor3 (ENSSAUG00010018547)	ENSSAUG00010018600	ENSSAUG00010002821	ENSSAUG00010002836 ##22	ENSSAUG00010002947	ATL2 (ENSSAUG00010003833)	ENSSAUG00010008784	ENSSAUG00010008859	rrp36 (ENSSAUG00010008862)	ENSSAUG00010008864	ENSSAUG00010008868	ENSSAUG00010008876	rrp36 (ENSSAUG00010008887)	rrp36 (ENSSAUG00010008889)	ENSSAUG00010008896	ENSSAUG00010008897	ENSSAUG00010008900	ENSSAUG00010008903	ENSSAUG00010008904
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000173625	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00940000160591.a.a	ENSGT00940000166218
Lumpfish	MODERN SPECIES		ubn1 (ENSCLMG00005005076)	ENSCLMG00005005078	ENSCLMG00005005079	ENSCLMG00005005080	ENSCLMG00005005081	ENSCLMG00005005082	ENSCLMG00005005084	MAL (ENSCLMG00005005086)	pgap4 (ENSCLMG00005005088)	tpcn3 (ENSCLMG00005000024)	ENSCLMG00005000083	PEX6 (ENSCLMG00005000183)	kcnh1b (ENSCLMG00005000486)	rcor3 (ENSCLMG00005000512)	ENSCLMG00005000514	ENSCLMG00005000516 ##22	ENSCLMG00005000590	ATL2 (ENSCLMG00005005599)	ENSCLMG00005010379	ENSCLMG00005010382	ENSCLMG00005010383	ENSCLMG00005010385	ENSCLMG00005010387	ENSCLMG00005010388	ENSCLMG00005010394	ENSCLMG00005011511	tp53bp2b (ENSCLMG00005011513)	ENSCLMG00005011523	ENSCLMG00005011524	ENSCLMG00005011525	ENSCLMG00005011526
Stickleback	MODERN SPECIES	4	ENSGACG00000019559	ENSGACG00000019561	MAL (ENSGACG00000019562)	pgap4 (ENSGACG00000019564)	ENSGACG00000019565	ENSGACG00000019566	ENSGACG00000019567	ENSGACG00000019570	PEX6 (ENSGACG00000019571)	ENSGACG00000019576	kcnh1b (ENSGACG00000019577)	rcor3 (ENSGACG00000019579)	TRAF5 (ENSGACG00000019580)	ENSGACG00000019581	ENSGACG00000019582	ENSGACG00000019583 ##22	ENSGACG00000019584	ENSGACG00000019589	ENSGACG00000019591	ENSGACG00000019595	ENSGACG00000019597	ENSGACG00000019598	JAG1 (ENSGACG00000019600)	RRP36 (ENSGACG00000019603)	mdh1aa (ENSGACG00000019606)	ugp2a (ENSGACG00000019607)	vps54 (ENSGACG00000019620)	ENSGACG00000019626	ENSGACG00000019627	ENSGACG00000019628	ENSGACG00000019631
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Pike perch	MODERN SPECIES	164														ENSSLUG00000011312	ENSSLUG00000011308	ENSSLUG00000011303 ##22	ENSSLUG00000011300	ENSSLUG00000010869	ENSSLUG00000010840	ENSSLUG00000010834	ENSSLUG00000010818	ENSSLUG00000010812	ATL2 (ENSSLUG00000008561)	ENSSLUG00000008355	ENSSLUG00000008328	ENSSLUG00000008318	ENSSLUG00000008312	ENSSLUG00000008272	ENSSLUG00000008258	ENSSLUG00000008254	ENSSLUG00000008251
Channel bull blenny	MODERN SPECIES		ENSCGOG00000001695	uncx4.1 (ENSCGOG00000001415)	ENSCGOG00000001411	ENSCGOG00000001404	ENSCGOG00000001400	MAL (ENSCGOG00000001395)	pgap4 (ENSCGOG00000001394)	tpcn3 (ENSCGOG00000001359)	ENSCGOG00000001346	PEX6 (ENSCGOG00000001344)	rcor3 (ENSCGOG00000001339)	ENSCGOG00000001336	ENSCGOG00000001333	ENSCGOG00000001320	ENSCGOG00000001314	ENSCGOG00000001306 ##22	ENSCGOG00000001301	ATL2 (ENSCGOG00000001232)	HNRNPLL (ENSCGOG00000001147)	ENSCGOG00000001136	ENSCGOG00000001130	ENSCGOG00000001128	JAG1 (ENSCGOG00000000763)	rrp36 (ENSCGOG00000000590)	tp53bp2b (ENSCGOG00000000577)	gtpbp2b (ENSCGOG00000000439)	ENSCGOG00000000413	ENSCGOG00000000346	ENSCGOG00000000329	ero1b (ENSCGOG00000000281)	GPR137B (ENSCGOG00000000251)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Carangaria	ANCESTRAL SPECIES		ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Carangaria_A	ANCESTRAL SPECIES	42	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a.f	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Barramundi perch	MODERN SPECIES	538						kcnh1b (ENSLCAG00010025870)	rcor3 (ENSLCAG00010025864)	ENSLCAG00010025856	ENSLCAG00010025853	ENSLCAG00010025848	ENSLCAG00010025847	ENSLCAG00010025842	ENSLCAG00010025840	ENSLCAG00010025829	ENSLCAG00010025821	ENSLCAG00010025819 ##22	ENSLCAG00010025818
Seriola	ANCESTRAL SPECIES	80	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b.i	ENSGT01100000263529.a.a.a.b.a.a.b.j	ENSGT00950000182772.A.b ##22	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.c.a.b.a.a.b	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a.e	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a
Yellowtail amberjack	MODERN SPECIES	2413																ENSSLDG00000010600 ##22	ENSSLDG00000010678
Greater amberjack	MODERN SPECIES	116	vps54 (ENSSDUG00000017966)	ENSSDUG00000018103	slc29a2 (ENSSDUG00000018120)	lgalsla (ENSSDUG00000018145)	MAL (ENSSDUG00000018154)	pgap4 (ENSSDUG00000018157)	tpcn3 (ENSSDUG00000018167)	ENSSDUG00000018199	ENSSDUG00000018257	kcnh1b (ENSSDUG00000018286)	rcor3 (ENSSDUG00000018349)	ENSSDUG00000018394	ENSSDUG00000018420	ENSSDUG00000018459	ENSSDUG00000018473	ENSSDUG00000018486 ##22	ENSSDUG00000018508	ENSSDUG00000018526	ATL2 (ENSSDUG00000018564)	ENSSDUG00000018598	slc22a7a (ENSSDUG00000018687)	ENSSDUG00000018729	ENSSDUG00000018808	ENSSDUG00000018840	ENSSDUG00000018850	ENSSDUG00000018858	JAG1 (ENSSDUG00000018867)	rrp36 (ENSSDUG00000018924)	tp53bp2b (ENSSDUG00000018935)	gtpbp2b (ENSSDUG00000018968)	ENSSDUG00000019016
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00940000167432	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Tongue sole	MODERN SPECIES	19	lsm6 (ENSCSEG00000000423)	pou4f2 (ENSCSEG00000000431)	ednraa (ENSCSEG00000000438)	tmem184c (ENSCSEG00000000445)	prmt9 (ENSCSEG00000000457)	arhgap10 (ENSCSEG00000000467)	nr3c2 (ENSCSEG00000000489)	ENSCSEG00000000500	ENSCSEG00000000510	ENSCSEG00000000546	tpcn3 (ENSCSEG00000000553)	kcnh1b (ENSCSEG00000000566)	rcor3 (ENSCSEG00000000571)	ENSCSEG00000000579	ENSCSEG00000000581	ENSCSEG00000000593 ##22	ATL2 (ENSCSEG00000000888)	ENSCSEG00000000912	slc22a7a (ENSCSEG00000000961)	ENSCSEG00000000968	ENSCSEG00000000970	NID1 (ENSCSEG00000000973)	tbce (ENSCSEG00000000986)	rbm34 (ENSCSEG00000000993)	tomm20b (ENSCSEG00000001016)	ENSCSEG00000001023	gtpbp2b (ENSCSEG00000001025)	ENSCSEG00000001029	ENSCSEG00000001036	RRP36 (ENSCSEG00000001039)	JAG1 (ENSCSEG00000001045)
Turbot	MODERN SPECIES	20	VPS54 (ENSSMAG00000021089)	ENSSMAG00000021091	ENSSMAG00000021093	LGALSL (ENSSMAG00000023252)	ENSSMAG00000021095	pgap4 (ENSSMAG00000021151)	ENSSMAG00000035115	ENSSMAG00000029348	ENSSMAG00000021152	ENSSMAG00000034132	ENSSMAG00000021153	ENSSMAG00000021154	ENSSMAG00000021155	rcor3 (ENSSMAG00000021156)	ENSSMAG00000021157	ENSSMAG00000021158 ##22	ENSSMAG00000021159	ENSSMAG00000021160	ENSSMAG00000021161	ENSSMAG00000020991	ENSSMAG00000020988	ENSSMAG00000020964	ENSSMAG00000020962	ENSSMAG00000020961	map1lc3c (ENSSMAG00000020959)	ENSSMAG00000020957	tomm20b (ENSSMAG00000020956)	rbm34 (ENSSMAG00000020955)	tbce (ENSSMAG00000020949)	NID1 (ENSSMAG00000020946)	ENSSMAG00000020945
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Anabantoidei	ANCESTRAL SPECIES		ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Climbing perch	MODERN SPECIES		MDH1 (ENSATEG00000019629)	ugp2a (ENSATEG00000019600)	VPS54 (ENSATEG00000019507)	ENSATEG00000019473	ENSATEG00000019441	LGALSL (ENSATEG00000019405)	ENSATEG00000025975	pgap4 (ENSATEG00000019383)	ENSATEG00000019275	ENSATEG00000019207	ENSATEG00000019183	rcor3 (ENSATEG00000019156)	ENSATEG00000029533	ENSATEG00000019132	ENSATEG00000019034	ENSATEG00000017567 ##22	ENSATEG00000017437	ENSATEG00000017415	ENSATEG00000017166	ENSATEG00000017111	ENSATEG00000017071	ENSATEG00000017069	ENSATEG00000016970	ENSATEG00000016946	ENSATEG00000016925	ENSATEG00000016911	ENSATEG00000016900	ENSATEG00000016852	ero1b (ENSATEG00000016786)	ENSATEG00000016758	NID1 (ENSATEG00000016612)
Zig-zag eel	MODERN SPECIES	39								ENSMAMG00000019497	rcor3 (ENSMAMG00000019467)	ENSMAMG00000019441	ENSMAMG00000024723	ENSMAMG00000025963	ENSMAMG00000026229	ENSMAMG00000019416	ENSMAMG00000027675	ENSMAMG00000019318 ##22	ENSMAMG00000019327	ENSMAMG00000019308	ENSMAMG00000019288	ENSMAMG00000019277	ENSMAMG00000019241	ENSMAMG00000026182	ENSMAMG00000019237	ENSMAMG00000019186	ENSMAMG00000019157	ENSMAMG00000018976	ENSMAMG00000018933	ENSMAMG00000027259	ero1b (ENSMAMG00000018900)	ENSMAMG00000018878	NID1 (ENSMAMG00000018873)
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005008274	ENSMMDG00005008272	ENSMMDG00005008268	ENSMMDG00005008263	slc8a1a (ENSMMDG00005008248)	MAL (ENSMMDG00005008243)	pgap4 (ENSMMDG00005008236)	tpcn3 (ENSMMDG00005008129)	ENSMMDG00005008112	ENSMMDG00005008107	ENSMMDG00005008100	hmox2a (ENSMMDG00005008097)	kcnh1b (ENSMMDG00005008027)	rcor3 (ENSMMDG00005008021)	TRAF5 (ENSMMDG00005008018)	ENSMMDG00005008011 ##22	ENSMMDG00005007995	ATL2 (ENSMMDG00005003996)	HNRNPLL (ENSMMDG00005003890)	srsf7b (ENSMMDG00005003856)	GEMIN6 (ENSMMDG00005003830)	sos1 (ENSMMDG00005002011)	tmem178a (ENSMMDG00005001941)	ENSMMDG00005001934	ENSMMDG00005000366	ENSMMDG00005000068	ENSMMDG00005000067	ENSMMDG00005000066	ENSMMDG00005000065	ENSMMDG00005000064	ENSMMDG00005000063
Otomorpha	ANCESTRAL SPECIES	357		ENSGT00390000006619	ENSGT00940000163420	ENSGT00940000155483.f	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00940000155129.B	ENSGT00940000154987.i.b.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109
Clupeiformes	ANCESTRAL SPECIES	228							ENSGT00940000155129.B	ENSGT00940000154987.i.b.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00390000011529	ENSGT00940000156048.e.b.a.e	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504	ENSGT00940000160809	ENSGT00940000154186.a.r	ENSGT00940000155337.`b
Atlantic herring	MODERN SPECIES	18						slc8a1a (ENSCHAG00000020326)	mala.1 (ENSCHAG00000020316)	pgap4 (ENSCHAG00000020312)	tpcn3 (ENSCHAG00000020112)	ENSCHAG00000019927	slc22a7a (ENSCHAG00000019896)	ENSCHAG00000019446	kcnh1b (ENSCHAG00000018855)	rcor3 (ENSCHAG00000018326)	ENSCHAG00000018311	ENSCHAG00000018249 ##22	ENSCHAG00000016388	ptk7a (ENSCHAG00000014892)	soul4 (ENSCHAG00000014856)	ENSCHAG00000014828	nup133 (ENSCHAG00000012386)	ACTA1 (ENSCHAG00000012335)	ENSCHAG00000012301	RHOU (ENSCHAG00000012258)	dla (ENSCHAG00000012220)	ENSCHAG00000012152	smdt1b (ENSCHAG00000012144)	pane1 (ENSCHAG00000012136)	mb (ENSCHAG00000012126)	aftpha (ENSCHAG00000012103)	ENSCHAG00000012014
Denticle herring	MODERN SPECIES	13	cep20 (ENSDCDG00000024810)	myh11a (ENSDCDG00000024977)	NDE1 (ENSDCDG00000026270)	CHST1 (ENSDCDG00000026271)	ENSDCDG00000026273	ENSDCDG00000026278	ptger1a (ENSDCDG00000026283)	ilf3a (ENSDCDG00000026289)	acp5a (ENSDCDG00000026295)	SLC44A2 (ENSDCDG00000026310)	ENSDCDG00000026642	odad3 (ENSDCDG00000026645)	ENSDCDG00000026649	rcor3 (ENSDCDG00000026656)	ENSDCDG00000026672	ENSDCDG00000026674 ##22	MARK1 (ENSDCDG00000026685)	ptk7a (ENSDCDG00000027076)	soul4 (ENSDCDG00000027155)	nup133 (ENSDCDG00000027169)	ACTA1 (ENSDCDG00000027243)	CCSAP (ENSDCDG00000027245)	RHOU (ENSDCDG00000027246)	dla (ENSDCDG00000027261)	ENSDCDG00000027266	smdt1b (ENSDCDG00000027269)	zgc:158803 (ENSDCDG00000027270)	pane1 (ENSDCDG00000027271)	mb (ENSDCDG00000027272)	ENSDCDG00000027274	ENSDCDG00000027300
Otophysi	ANCESTRAL SPECIES	261	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b
Characiphysae	ANCESTRAL SPECIES	117	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b	ENSGT00530000064271	ENSGT00940000157388.b.b	ENSGT00940000155704
Channel catfish	MODERN SPECIES	1	si:ch211-284e20.8 (ENSIPUG00000002525)	FETUB (ENSIPUG00000002515)	hps3 (ENSIPUG00000002493)	cp (ENSIPUG00000002417)	TM4SF1 (ENSIPUG00000002406)	ENSIPUG00000002390	tm4sf4 (ENSIPUG00000002378)	wwtr1 (ENSIPUG00000002343)	commd2 (ENSIPUG00000002307)	ENSIPUG00000002295	ENSIPUG00000002286	ENSIPUG00000002259	kcnh1b (ENSIPUG00000002236)	rcor3 (ENSIPUG00000002202)	ENSIPUG00000002193	ENSIPUG00000002167 ##22	MARK1 (ENSIPUG00000001985)	ptk7 (ENSIPUG00000001905)	soul4 (ENSIPUG00000001884)	klc4 (ENSIPUG00000001836)	ENSIPUG00000001808	tle2a (ENSIPUG00000001748)	ENSIPUG00000001716	ENSIPUG00000001703	tle5 (ENSIPUG00000001688)	gna11a (ENSIPUG00000001673)	gna15.4 (ENSIPUG00000001668)	C2CD4C (ENSIPUG00000001665)	ap3d1 (ENSIPUG00000001409)	hdgfl2 (ENSIPUG00000001382)	UBXN6 (ENSIPUG00000001356)
Characiphysae_b	ANCESTRAL SPECIES	125	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b	ENSGT00530000064271	ENSGT00940000157388.b.b	ENSGT00940000155704
Characoidei	ANCESTRAL SPECIES	176	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b
Red-bellied piranha	MODERN SPECIES	863													kcnh1b (ENSPNAG00000001601)	rcor3 (ENSPNAG00000001625)	ENSPNAG00000001638	ENSPNAG00000001648 ##22	MARK1 (ENSPNAG00000011355)	ptk7a (ENSPNAG00000011406)	soul4 (ENSPNAG00000011423)	ENSPNAG00000001750	ENSPNAG00000011484
Mexicana tetra	MODERN SPECIES	20	snrpa1 (ENSAMXG00000031397)	ENSAMXG00000029924	elp4 (ENSAMXG00000001232)	pax6b (ENSAMXG00000001228)	hps3 (ENSAMXG00000004755)	cp (ENSAMXG00000004739)	TM4SF1 (ENSAMXG00000036405)	ENSAMXG00000004727	tm4sf4 (ENSAMXG00000004720)	wwtr1 (ENSAMXG00000004716)	commd2 (ENSAMXG00000030801)	ENSAMXG00000004706	kcnh1b (ENSAMXG00000039836)	ENSAMXG00000004677	ENSAMXG00000004662	ENSAMXG00000004646 ##22	MARK1 (ENSAMXG00000004609)	ENSAMXG00000036426
Electric eel	MODERN SPECIES	23	anos1b (ENSEEEG00000023869)	si:ch211-262h13.5 (ENSEEEG00000023872)	ahsg1 (ENSEEEG00000023876)	ENSEEEG00000023879	si:ch211-284e20.8 (ENSEEEG00000023884)	hps3 (ENSEEEG00000023891)	cp (ENSEEEG00000023903)	TM4SF1 (ENSEEEG00000023907)	tm4sf4 (ENSEEEG00000023911)	wwtr1 (ENSEEEG00000023916)	commd2 (ENSEEEG00000023917)	ENSEEEG00000023921	kcnh1b (ENSEEEG00000023922)	rcor3 (ENSEEEG00000023926)	ENSEEEG00000023930	ENSEEEG00000023945 ##22	ENSEEEG00000023986	ptk7a (ENSEEEG00000023998)	ENSEEEG00000024038	ENSEEEG00000024043	ENSEEEG00000024045	rrp36 (ENSEEEG00000024047)	sipa1l2 (ENSEEEG00000024051)	egln1b (ENSEEEG00000024055)	armh3 (ENSEEEG00000024064)	RANBP3 (ENSEEEG00000024107)	NRTN (ENSEEEG00000024108)	ndufa11 (ENSEEEG00000024109)	VMAC (ENSEEEG00000024110)	larp6b (ENSEEEG00000024111)	gadd45ba (ENSEEEG00000024113)
Cyprinoidei	ANCESTRAL SPECIES	123	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00940000155793.a.a	ENSGT00550000074953	ENSGT00390000008489	ENSGT00510000046760.b	ENSGT01030000234590.A.b.b	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00940000156823.e	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b	ENSGT00950000183209.b.a.a	ENSGT00390000009189	ENSGT00950000182836.a	ENSGT00940000159967	ENSGT00940000179241	ENSGT00940000154800	ENSGT00940000157952	ENSGT00530000064165.b	ENSGT00390000003866.a.a.e
Cyprininae	ANCESTRAL SPECIES	359	ENSGT00440000033720.b.d	ENSGT00950000182930.C.f.b	ENSGT00940000155793.a.a.a	ENSGT00550000074953	ENSGT00390000008489	ENSGT00390000007965	ENSGT00510000046760.b.c	ENSGT01030000234590.A.b.b.f	ENSGT01030000234590.A.b.a.a.a	ENSGT00940000155866.e.a	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00940000156823.e	ENSGT00940000154196.b	ENSGT00940000163836.a.b.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.g	ENSGT00940000157908.h.b	ENSGT00940000165109.b	ENSGT00940000164764.j.b.a	ENSGT00950000183209.b.a.a.h.b.a	ENSGT00940000162476.e.b	ENSGT00530000063604.A.b	ENSGT00940000162611.a.a.a.g	ENSGT00940000157322.b.b.a
Cyprininae_a	ANCESTRAL SPECIES	143	ENSGT00950000182930.C.f.b	ENSGT00940000155793.a.a.a	ENSGT00550000074953	ENSGT00390000008489	ENSGT00390000007965	ENSGT00510000046760.b.c	ENSGT01030000234590.A.b.b.f	ENSGT01030000234590.A.b.a.a.a	ENSGT00940000155866.e.a	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT01100000263547.a.a.a.d.a.a.a	ENSGT00940000156823.e	ENSGT00940000154196.b.c	ENSGT00940000163836.a.b.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.g	ENSGT00940000157908.h.b	ENSGT00940000165109.b	ENSGT00940000164764.j.b.b	ENSGT00940000164764.i.a	ENSGT00950000183209.b.a.a.h.b.a	ENSGT00940000162476.e.b	ENSGT00530000063604.A.b	ENSGT00940000162611.a.a.a.g	ENSGT00940000157322.b.b.a	ENSGT00940000157331.b.a.i	ENSGT00940000157798.b.a	ENSGT00390000002554.l	ENSGT00940000157837.d.d	ENSGT00400000022158.b.h
Common carp reference	MODERN SPECIES	5	ENSCCRG00000058667	ENSCCRG00000068005	ahsg1 (ENSCCRG00000050855)	ENSCCRG00000058477	kcnh1b (ENSCCRG00000070669)	ENSCCRG00000056516	wwtr1 (ENSCCRG00000077468)	tm4sf4 (ENSCCRG00000025974)	ENSCCRG00000005007	cp (ENSCCRG00000005029)	si:ch211-284e20.8 (ENSCCRG00000005147)	ENSCCRG00000053357	elavl2 (ENSCCRG00000010600)	rcor3 (ENSCCRG00000010592)	ENSCCRG00000010589	ENSCCRG00000010585 ##22	ENSCCRG00000004540	ptk7a (ENSCCRG00000021855)	soul4 (ENSCCRG00000071566)	klc4 (ENSCCRG00000056204)	ENSCCRG00000057807	ENSCCRG00000062623	atpv0e2 (ENSCCRG00000037723)	hoga1 (ENSCCRG00000037731)	ENSCCRG00000064155	slit1b (ENSCCRG00000082250)	ENSCCRG00000029613	ENSCCRG00000029597	armh3 (ENSCCRG00000034896)	ENSCCRG00000036776	srfa (ENSCCRG00000078018)
Golden-line barbel	MODERN SPECIES	102	anos1b (ENSSGRG00000008442)	si:ch211-262h13.5 (ENSSGRG00000008443)	ENSSGRG00000008444	ahsg1 (ENSSGRG00000008445)	ENSSGRG00000008450	kcnh1b (ENSSGRG00000008452)	commd2 (ENSSGRG00000008688)	wwtr1 (ENSSGRG00000008690)	tm4sf4 (ENSSGRG00000008691)	cp (ENSSGRG00000008694)	ENSSGRG00000009073	elavl2 (ENSSGRG00000009074)	rcor3 (ENSSGRG00000009098)	ENSSGRG00000009386	ENSSGRG00000009391	ENSSGRG00000009395 ##22	MARK1 (ENSSGRG00000009418)	ptk7a (ENSSGRG00000009831)	soul4 (ENSSGRG00000010511)	ENSSGRG00000010514	klc4 (ENSSGRG00000010519)	ENSSGRG00000010542	ENSSGRG00000010793	ENSSGRG00000010795	atpv0e2 (ENSSGRG00000010796)	atpv0e2 (ENSSGRG00000010797)	hoga1 (ENSSGRG00000010798)	ENSSGRG00000010837	slit1b (ENSSGRG00000010840)	ARHGAP19 (ENSSGRG00000010851)	KCNIP2 (ENSSGRG00000010921)
Goldfish	MODERN SPECIES	14	ENSCARG00000004536	kcnh1b (ENSCARG00000004566)	ENSCARG00000004689	ENSCARG00000004696	commd2 (ENSCARG00000004709)	wwtr1 (ENSCARG00000004728)	tm4sf4 (ENSCARG00000004738)	ENSCARG00000004749	cp (ENSCARG00000004813)	ENSCARG00000005993	si:ch211-284e20.8 (ENSCARG00000005999)	elavl2 (ENSCARG00000006020)	rcor3 (ENSCARG00000006320)	ENSCARG00000006427	ENSCARG00000006443	ENSCARG00000006469 ##22	MARK1 (ENSCARG00000006623)	ptk7a (ENSCARG00000008293)	soul4 (ENSCARG00000010514)	klc4 (ENSCARG00000010522)	ENSCARG00000010586	ENSCARG00000011974	ENSCARG00000011983	atpv0e2 (ENSCARG00000011985)	hoga1 (ENSCARG00000011993)	ENSCARG00000012016	ARHGAP19 (ENSCARG00000012026)	KCNIP2 (ENSCARG00000012071)	armh3 (ENSCARG00000012164)	ENSCARG00000012269	srfa (ENSCARG00000012286)
Osteoglossiformes	ANCESTRAL SPECIES	263	ENSGT00390000006712	ENSGT00940000155423.i	ENSGT00940000159641	ENSGT00940000155483.c	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00940000155129.B.d	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.a.a	ENSGT00940000161321.f	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00940000157837.d
Asian bonytongue	MODERN SPECIES	7	ATL2 (ENSSFOG00015021955)	eif4a3 (ENSSFOG00015022017)	SRF (ENSSFOG00015030894)	PTK7 (ENSSFOG00015022057)	MAP4K3 (ENSSFOG00015022098)	tmem178a (ENSSFOG00015022190)	slc8a1a (ENSSFOG00015022200)	ENSSFOG00015022212	pgap4 (ENSSFOG00015022221)	tpcn3 (ENSSFOG00015022231)	ENSSFOG00015022258	ENSSFOG00015030831	ENSSFOG00015022294	rcor3 (ENSSFOG00015022331)	TRAF5 (ENSSFOG00015022347)	ENSSFOG00015022361 ##22	EFEMP1 (ENSSFOG00015022380)	ENSSFOG00015022409	ENSSFOG00015022421	rbbp9 (ENSSFOG00015031725)	polr3f (ENSSFOG00015027007)	dzank1 (ENSSFOG00015022472)	kat14 (ENSSFOG00015022489)	AARS2 (ENSSFOG00015022513)	capn8 (ENSSFOG00015022547)	capn2b (ENSSFOG00015022584)	capn1b (ENSSFOG00015022628)	TMEM63B (ENSSFOG00015022661)	SLC29A1 (ENSSFOG00015022687)	ENSSFOG00015022702	taf5l (ENSSFOG00015022719)
P. kingsleyae	MODERN SPECIES	255	nceh1b.1 (ENSPKIG00000018606)	tnfsf10 (ENSPKIG00000018621)	msl2b (ENSPKIG00000018641)	ENSPKIG00000018653	ENSPKIG00000018663	DIP2C (ENSPKIG00000018837)	pgap4 (ENSPKIG00000019039)	tpcn3 (ENSPKIG00000019069)	ENSPKIG00000019127	ENSPKIG00000019169	ENSPKIG00000019191	ENSPKIG00000019217	kcnh1b (ENSPKIG00000019234)	rcor3 (ENSPKIG00000019270)	TRAF5 (ENSPKIG00000019302)	ENSPKIG00000019330 ##22	MARK1 (ENSPKIG00000019372)	EFEMP1 (ENSPKIG00000019463)	ENSPKIG00000019485
Spotted gar	MODERN SPECIES	654	mala.1 (ENSLOCG00000015615)	MAL (ENSLOCG00000015614)	nphp1 (ENSLOCG00000015611)	pgap4 (ENSLOCG00000017357)	tpcn3 (ENSLOCG00000015605)	ENSLOCG00000015601	slc22a7a (ENSLOCG00000015596)	slc22a7b.1 (ENSLOCG00000015592)	CRIP3 (ENSLOCG00000015589)	ENSLOCG00000015586	hhat (ENSLOCG00000015584)	kcnh1b (ENSLOCG00000015579)	ENSLOCG00000015577	TRAF5 (ENSLOCG00000015572)	mrpl57 (ENSLOCG00000017356)	ENSLOCG00000015569 ##22	MARK1 (ENSLOCG00000015568)	CCDC88A (ENSLOCG00000015561)	prorsd1 (ENSLOCG00000015559)	mtif2 (ENSLOCG00000015555)	rps27a (ENSLOCG00000015551)	CLHC1 (ENSLOCG00000015546)	ENSLOCG00000017355	rtn4a (ENSLOCG00000015545)	EML6 (ENSLOCG00000015539)	SPTBN1 (ENSLOCG00000015528)	C2orf73 (ENSLOCG00000015525)	ENSLOCG00000015524	ENSLOCG00000017354	slc30a6 (ENSLOCG00000015520)	sult6b1 (ENSLOCG00000015518)
Reedfish	MODERN SPECIES	6	ENSECRG00000017522	ENSECRG00000017534	ENSECRG00000017550	ENSECRG00000014585	atl3 (ENSECRG00000014627)	ENSECRG00000014668	ENSECRG00000014683	slc22a7a (ENSECRG00000014814)	ENSECRG00000014987	ENSECRG00000015057	ENSECRG00000015128	hhat (ENSECRG00000015287)	KCNH1 (ENSECRG00000015774)	rcor3 (ENSECRG00000016101)	TRAF5 (ENSECRG00000016179)	ENSECRG00000016222 ##22	mrpl57 (ENSECRG00000016852)	MARK1 (ENSECRG00000016901)	SLC30A6 (ENSECRG00000017001)	ENSECRG00000017043	ACYP2 (ENSECRG00000017070)	ENSECRG00000017084	ENSECRG00000017103	SPTBN1 (ENSECRG00000017169)	EML6 (ENSECRG00000017325)	rtn4a (ENSECRG00000017365)	CLHC1 (ENSECRG00000017425)	rps27a (ENSECRG00000017569)	mtif2 (ENSECRG00000017602)	prorsd1 (ENSECRG00000017633)	ENSECRG00000017647
Elephant shark	MODERN SPECIES	1508	pkdcca (ENSCMIG00000005777)	BICRAL (ENSCMIG00000005782)	tbcc (ENSCMIG00000005788)	prph2b (ENSCMIG00000005792)	UBR2 (ENSCMIG00000005847)	TRERF1 (ENSCMIG00000005952)	MRPS10 (ENSCMIG00000005956)	utp25 (ENSCMIG00000005964)	ENSCMIG00000005966	SYT14 (ENSCMIG00000005968)	ENSCMIG00000005969	HHAT (ENSCMIG00000005972)	kcnh1b (ENSCMIG00000005986)	rcor3 (ENSCMIG00000006003)	TRAF5 (ENSCMIG00000006007)	ENSCMIG00000006010 ##22	mrpl57 (ENSCMIG00000006013)	ENSCMIG00000006016	pex13 (ENSCMIG00000006019)
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES	52											ENSGT00950000183171.B	ENSGT00940000174440	ENSGT00390000014308	ENSGT00940000156272	ENSGT00950000183019.c	ENSGT00950000182772.A.c ##22	ENSGT00940000160982	ENSGT00940000157664
Ciona savignyi	DUPLICATION
Ciona savignyi	MODERN SPECIES	2	ENSCSAVG00000009992	ENSCSAVG00000009991	ENSCSAVG00000009975	ENSCSAVG00000009973	ENSCSAVG00000009959	ENSCSAVG00000009957	ENSCSAVG00000009953	ENSCSAVG00000009952	ENSCSAVG00000009951	ENSCSAVG00000009947	ENSCSAVG00000009944	ENSCSAVG00000009943	ENSCSAVG00000009940	ENSCSAVG00000009939	ENSCSAVG00000009937	ENSCSAVG00000009932 ##22	ENSCSAVG00000009931	ENSCSAVG00000009928	ENSCSAVG00000009927	ENSCSAVG00000009925	ENSCSAVG00000009924	ENSCSAVG00000009922	ENSCSAVG00000009919	ENSCSAVG00000009918	ENSCSAVG00000009916	ENSCSAVG00000009913	ENSCSAVG00000009910	ENSCSAVG00000009907	ENSCSAVG00000009904	ENSCSAVG00000009900	ENSCSAVG00000009898
Ciona savignyi	MODERN SPECIES	129	ENSCSAVG00000003312	ENSCSAVG00000003395	ENSCSAVG00000003397	ENSCSAVG00000003400	ENSCSAVG00000003402	ENSCSAVG00000003409	ENSCSAVG00000003413	ENSCSAVG00000003415	ENSCSAVG00000003418	ENSCSAVG00000003420	ENSCSAVG00000003426	ENSCSAVG00000003437	ENSCSAVG00000003527	ENSCSAVG00000003532	ENSCSAVG00000004077	ENSCSAVG00000004090 ##22	ENSCSAVG00000004213	ENSCSAVG00000004226	ENSCSAVG00000004234	ENSCSAVG00000004266	ENSCSAVG00000004388	ENSCSAVG00000004396	ENSCSAVG00000004414	ENSCSAVG00000004422	ENSCSAVG00000004428	ENSCSAVG00000004437	ENSCSAVG00000004449	ENSCSAVG00000004456	ENSCSAVG00000004463	ENSCSAVG00000004472	ENSCSAVG00000004476
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000023418	ENSCING00000000427	ENSCING00000016693	ENSCING00000011786	ENSCING00000007136	ENSCING00000020936	ENSCING00000021460	ENSCING00000019895	atbf (ENSCING00000011787)	ENSCING00000022595	ENSCING00000023130	ENSCING00000007138	ENSCING00000007139	ENSCING00000007140	ENSCING00000019273	ENSCING00000007141 ##22	ENSCING00000007142	ENSCING00000011790	ENSCING00000021316	ENSCING00000023139	ENSCING00000018654	ENSCING00000019904	ENSCING00000019653	ENSCING00000022118	ENSCING00000011782	ENSCING00000007132	ENSCING00000011784	ENSCING00000011785	ENSCING00000019479	ENSCING00000007133	ENSCING00000007134
Ciona	ANCESTRAL SPECIES	671														ENSGT00530000067940	ENSGT00940000171978	ENSGT00950000182772.A.d ##22
Ciona savignyi	MODERN SPECIES	154	ENSCSAVG00000008586	ENSCSAVG00000008585	ENSCSAVG00000008581	ENSCSAVG00000008580	ENSCSAVG00000008579	ENSCSAVG00000008577	ENSCSAVG00000008575	ENSCSAVG00000008561	ENSCSAVG00000008444	ENSCSAVG00000008421	ENSCSAVG00000008418	ENSCSAVG00000008365	ENSCSAVG00000008299	ENSCSAVG00000008294	ENSCSAVG00000008291	ENSCSAVG00000008285 ##22	ENSCSAVG00000008194	ENSCSAVG00000008192	ENSCSAVG00000008188	ENSCSAVG00000008187	ENSCSAVG00000008185	ENSCSAVG00000008176	ENSCSAVG00000008174	ENSCSAVG00000008172	ENSCSAVG00000008171	ENSCSAVG00000008169	ENSCSAVG00000008166	ENSCSAVG00000008163	ENSCSAVG00000008149	ENSCSAVG00000008147	ENSCSAVG00000008119
Ciona intestinalis	MODERN SPECIES	15												ENSCING00000012054	ENSCING00000004264	ENSCING00000012055	ENSCING00000012056	ENSCING00000004256 ##22	ENSCING00000020381	ENSCING00000021279	ENSCING00000004267	ENSCING00000004265	ENSCING00000018358	ENSCING00000012053	ENSCING00000019292	ENSCING00000020074	ENSCING00000024129	ENSCING00000017140	ENSCING00000024865	ci-ak58 (ENSCING00000004295)	ENSCING00000004284	ENSCING00000018624	ENSCING00000004299
Ecdysozoa	DUPLICATION
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000182772.A.e ##22
Fruitfly	DUPLICATION
Fruitfly	MODERN SPECIES	18	GluRIB (FBgn0264000)	CG4477 (FBgn0035971)	CG4483 (FBgn0035970)	CG4476 (FBgn0035969)	Slc45-1 (FBgn0035968)	Rdl (FBgn0004244)	nwk (FBgn0263456)	Use1 (FBgn0035965)	Dhpr (FBgn0035964)	bol (FBgn0011206)	CG13315 (FBgn0040827)	CG32032 (FBgn0043806)	teq (FBgn0023479)	CG4942 (FBgn0035960)	CG4911 (FBgn0035959)	Argk1 (FBgn0000116) ##22	Argk2 (FBgn0035957) ##22	Doc1 (FBgn0028789)	Doc2 (FBgn0035956)	CG5194 (FBgn0035955)	Doc3 (FBgn0035954)	CG5087 (FBgn0035953)	smg (FBgn0016070)	CG5280 (FBgn0035952)	CG5068 (FBgn0035951)	Galk (FBgn0263199)	CG13314 (FBgn0035949)	CG5644 (FBgn0035948)	Srp68 (FBgn0035947)	pix (FBgn0086706)	CG5026 (FBgn0035945)
Fruitfly	MODERN SPECIES	18	CG5021 (FBgn0035944)	CG5026 (FBgn0035945)	pix (FBgn0086706)	Srp68 (FBgn0035947)	CG5644 (FBgn0035948)	CG13314 (FBgn0035949)	Galk (FBgn0263199)	CG5068 (FBgn0035951)	CG5280 (FBgn0035952)	smg (FBgn0016070)	CG5087 (FBgn0035953)	Doc3 (FBgn0035954)	CG5194 (FBgn0035955)	Doc2 (FBgn0035956)	Doc1 (FBgn0028789)	Argk2 (FBgn0035957) ##22	Argk1 (FBgn0000116) ##22	CG4911 (FBgn0035959)	CG4942 (FBgn0035960)	teq (FBgn0023479)	CG32032 (FBgn0043806)	CG13315 (FBgn0040827)	bol (FBgn0011206)	Dhpr (FBgn0035964)	Use1 (FBgn0035965)	nwk (FBgn0263456)	Rdl (FBgn0004244)	Slc45-1 (FBgn0035968)	CG4476 (FBgn0035969)	CG4483 (FBgn0035970)	CG4477 (FBgn0035971)
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	MODERN SPECIES	6	spp-2 (WBGene00004987)	spp-3 (WBGene00004988)	his-40 (WBGene00001914)	his-38 (WBGene00001912)	sur-5 (WBGene00006351)	K03A1.4 (WBGene00019352)	lron-7 (WBGene00019351)	unc-10 (WBGene00006750)	F46H5.11 (WBGene00303398)	grd-7 (WBGene00001696)	F46H5.2 (WBGene00018518)	lact-1 (WBGene00018523)	F46H5.5 (WBGene00018521)	F46H5.4 (WBGene00018520)	F46H5.7 (WBGene00018522)	F46H5.3 (WBGene00018519) ##22	syd-9 (WBGene00044068)	spp-22 (WBGene00044283)	ZK867.2 (WBGene00022829)	C55B6.5 (WBGene00016941)	C55B6.1 (WBGene00016939)	dnj-7 (WBGene00001025)	C55B6.7 (WBGene00206379)	C55B6.4 (WBGene00016940)	F43E12.1 (WBGene00044577)	bar-1 (WBGene00000238)	pgp-10 (WBGene00004004)	C54D1.7 (WBGene00016914)	lam-2 (WBGene00016913)	alh-10 (WBGene00000116)	clec-86 (WBGene00016912)
Caenorhabditis elegans	MODERN SPECIES		Y106G6H.1 (WBGene00013716)	F25D7.5 (WBGene00009114)	maph-1.2 (WBGene00009113)	blmp-1 (WBGene00003847)	tag-353 (WBGene00009112)	cup-2 (WBGene00000843)	mgl-2 (WBGene00003233)	maf-1 (WBGene00077521)	cox-19 (WBGene00009745)	F45H11.11 (WBGene00303028)	F45H11.8 (WBGene00189958)	hpo-35 (WBGene00009744)	ned-8 (WBGene00003587)	sptf-1 (WBGene00009743)	ZC434.9 (WBGene00013895)	ZC434.8 (WBGene00013894) ##22	coa-6 (WBGene00013893)	aph-2 (WBGene00000148)	ears-1 (WBGene00001337)	ZC434.3 (WBGene00013891)	ZC434.10 (WBGene00220261)	ZC434.4 (WBGene00013892)	rps-7 (WBGene00004476)	Y106G6G.1 (WBGene00013710)	dlc-6 (WBGene00013712)	Y106G6G.4 (WBGene00013713)	Y106G6G.2 (WBGene00013711)	T20F10.2 (WBGene00011864)	wts-1 (WBGene00007047)	ZC247.1 (WBGene00013859)	ZC247.2 (WBGene00013860)
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	MODERN SPECIES		parp-1 (WBGene00004049)	Y71F9AL.4 (WBGene00022110)	gst-43 (WBGene00001791)	copa-1 (WBGene00022119)	Y71F9AL.6 (WBGene00022111)	Y71F9AL.25 (WBGene00304792)	Y71F9AL.7 (WBGene00022112)	arx-1 (WBGene00000199)	dnc-5 (WBGene00022118)	Y71F9AL.8 (WBGene00022113)	Y71F9AL.9 (WBGene00022114)	rpl-1 (WBGene00004412)	Y71F9AL.12 (WBGene00022117)	Y71F9AL.10 (WBGene00022115)	W10C8.6 (WBGene00044433)	W10C8.5 (WBGene00021128) ##22	W10C8.4 (WBGene00021127)	ccb-2 (WBGene00021125)	pop-1 (WBGene00004077)	W03D8.3 (WBGene00020986)	W03D8.11 (WBGene00044796)	W03D8.5 (WBGene00020987)	itx-1 (WBGene00002174)	W03D8.2 (WBGene00020985)	W03D8.7 (WBGene00020988)	W03D8.8 (WBGene00020989)	W03D8.1 (WBGene00020984)	W03D8.14 (WBGene00255550)	W03D8.9 (WBGene00020990)	Y71F9B.15 (WBGene00022133)	Y71F9B.13 (WBGene00022131)
Caenorhabditis elegans	MODERN SPECIES		spe-47 (WBGene00021271)	pid-3 (WBGene00021270)	Y23H5A.2 (WBGene00021269)	cars-1 (WBGene00000800)	Y23H5A.8 (WBGene00023172)	F40E3.3 (WBGene00018231)	mage-1 (WBGene00018230)	F40E3.5 (WBGene00018232)	F40E3.6 (WBGene00018233)	F32B5.6 (WBGene00017979)	F32B5.7 (WBGene00017980)	cpz-1 (WBGene00000788)	msrp-1 (WBGene00017978)	F32B5.3 (WBGene00017977)	F32B5.2 (WBGene00017976)	F32B5.1 (WBGene00017975) ##22	lin-17 (WBGene00003006)	dnj-30 (WBGene00001048)	Y71F9B.6 (WBGene00022128)	snr-7 (WBGene00004920)	yop-1 (WBGene00022127)	Y71F9B.2 (WBGene00022126)	lron-11 (WBGene00022129)	plk-2 (WBGene00004043)	Y71F9B.9 (WBGene00022130)	sop-3 (WBGene00004946)	Y71F9B.1 (WBGene00022125)	Y71F9B.13 (WBGene00022131)	Y71F9B.15 (WBGene00022133)	W03D8.9 (WBGene00020990)	W03D8.14 (WBGene00255550)
Caenorhabditis elegans	MODERN SPECIES	5	F14H3.4 (WBGene00008823)	F14H3.5 (WBGene00008824)	F14H3.6 (WBGene00008825)	F14H3.15 (WBGene00219414)	fbxa-100 (WBGene00008826)	F14H3.14 (WBGene00045513)	cyp-35D1 (WBGene00008829)	nhr-176 (WBGene00008830)	srj-10 (WBGene00005598)	F14H3.12 (WBGene00008831)	srj-29 (WBGene00005616)	F22B8.3 (WBGene00009046)	F22B8.7 (WBGene00009049)	str-7 (WBGene00006075)	cth-1 (WBGene00009048)	argk-1 (WBGene00009706) ##22	srxa-16 (WBGene00009707)	str-25 (WBGene00006092)	str-103 (WBGene00006158)	skr-3 (WBGene00004809)	nhr-111 (WBGene00003701)	fbxa-143 (WBGene00044661)	fbxa-142 (WBGene00044659)	fbxa-144 (WBGene00009709)	F44G3.7 (WBGene00009708)	F44G3.10 (WBGene00009710)	F10A3.1 (WBGene00008631)	fbxa-88 (WBGene00008632)	fbxa-18 (WBGene00008633)	F10A3.4 (WBGene00008634)	str-254 (WBGene00006280)
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000182772.A.f ##22
Fruitfly	MODERN SPECIES	19	Uros2 (FBgn0038361)	c(3)G (FBgn0000246)	Acyp2 (FBgn0038363)	nsl1 (FBgn0262527)	CG9593 (FBgn0038365)	alpha-Man-IIb (FBgn0026616)	rec (FBgn0003227)	CG4576 (FBgn0038366)	CG43318 (FBgn0263023)	CG43317 (FBgn0263022)	Arpc3A (FBgn0038369)	ND-23 (FBgn0017567)	spn-E (FBgn0003483)	Pbp45 (FBgn0038371)	cv-d (FBgn0265048)	CG4546 (FBgn0038373) ##22	Hmt-1 (FBgn0038376)	CG31183 (FBgn0051183)	CG9632 (FBgn0038377)	CG14877 (FBgn0038380)	glob1 (FBgn0027657)	EndoU (FBgn0038381)	CG45105 (FBgn0266566)	Fbxl7 (FBgn0038385)	CG34276 (FBgn0085305)	CG5478 (FBgn0038386)	blp (FBgn0038387)	Sap47 (FBgn0013334)	CG31088 (FBgn0051088)	CG46383 (FBgn0286741)	CG4287 (FBgn0038388)