Chordata	ANCESTRAL SPECIES																	ENSGT00950000182772.A #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES	520																ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23
Gnathostomata	ANCESTRAL SPECIES	13	ENSGT00390000018900	ENSGT00940000178689	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000265079	ENSGT00950000182772.A.a.a ##22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00390000001205.b
Euteleostomi	ANCESTRAL SPECIES	15	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT01100000265079	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00390000001205.b
Sarcopterygii	ANCESTRAL SPECIES	7	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000168574	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Tetrapoda	ANCESTRAL SPECIES	23	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Amniota	ANCESTRAL SPECIES	8	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Mammalia	ANCESTRAL SPECIES	16	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Theria	ANCESTRAL SPECIES	14	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Eutheria	ANCESTRAL SPECIES	12	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478.i.b ##25	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478.i.b ##25	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00940000164834	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33
Primates	ANCESTRAL SPECIES	2	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862 #23	ENSGT00390000016478.i.b ##25	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862.j.b #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Lemuriformes	ANCESTRAL SPECIES	40	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862.j.b #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Mouse lemur	MODERN SPECIES	22	INF2 (ENSMICG00000034871) #7	TMEM179 (ENSMICG00000029522) #8	ENSMICG00000042488 #9	KIF26A (ENSMICG00000028277) #10	ASPG (ENSMICG00000013859) #11	RD3L (ENSMICG00000043039) #12	TDRD9 (ENSMICG00000000428) #13	ATP5MJ (ENSMICG00000047123) #14	PPP1R13B (ENSMICG00000014947) #15	ZFYVE21 (ENSMICG00000014930) #16	XRCC3 (ENSMICG00000014917) #17	KLC1 (ENSMICG00000014896) #18	ENSMICG00000029228 #19	COA8 (ENSMICG00000042844) #20	TRMT61A (ENSMICG00000047207) #21	CKB (ENSMICG00000009774) #22	MARK3 (ENSMICG00000009748) #23	ENSMICG00000037601 #24	EIF5 (ENSMICG00000010046) #25	ENSMICG00000037528 #26	TNFAIP2 (ENSMICG00000009107) #27	EXOC3L4 (ENSMICG00000009101) #28	LBHD2 (ENSMICG00000032097) #29	CDC42BPB (ENSMICG00000013226) #30	AMN (ENSMICG00000027178) #31	TRAF3 (ENSMICG00000011793) #32	RCOR1 (ENSMICG00000000496) #33	TECPR2 (ENSMICG00000006623) #34	CINP (ENSMICG00000006619) #35	ZNF839 (ENSMICG00000006615) #36	MOK (ENSMICG00000004537) #37
Lemuriformes_a	ANCESTRAL SPECIES	37	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000266056	ENSGT00940000154862.j.b #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Coquerels sifaka	MODERN SPECIES	365	ADSS1 (ENSPCOG00000000641)	INF2 (ENSPCOG00000009607) #7	TMEM179 (ENSPCOG00000021398) #8	C14orf180 (ENSPCOG00000021157) #9	KIF26A (ENSPCOG00000024515) #10	ASPG (ENSPCOG00000011247) #11	TDRD9 (ENSPCOG00000015323) #13	RD3L (ENSPCOG00000017543) #12	PPP1R13B (ENSPCOG00000013777) #15	ZFYVE21 (ENSPCOG00000013598) #16	XRCC3 (ENSPCOG00000012925) #17	KLC1 (ENSPCOG00000013111) #18	COA8 (ENSPCOG00000023191) #20	BAG5 (ENSPCOG00000025264) #19	TRMT61A (ENSPCOG00000028487) #21	CKB (ENSPCOG00000014151) #22	MARK3 (ENSPCOG00000023823) #23	EIF5 (ENSPCOG00000018505) #25	TNFAIP2 (ENSPCOG00000024298) #27	EXOC3L4 (ENSPCOG00000019423) #28	LBHD2 (ENSPCOG00000014760) #29	CDC42BPB (ENSPCOG00000025121) #30	AMN (ENSPCOG00000016828) #31	TRAF3 (ENSPCOG00000014996) #32	RCOR1 (ENSPCOG00000020275) #33	TECPR2 (ENSPCOG00000020207) #34	ZNF839 (ENSPCOG00000021768) #36	ENSPCOG00000005396	MOK (ENSPCOG00000015214) #37	WDR20 (ENSPCOG00000027238)	ENSPCOG00000028160
Greater bamboo lemur	MODERN SPECIES	754									PPP1R13B (ENSPSMG00000008404) #15	ZFYVE21 (ENSPSMG00000008479) #16	XRCC3 (ENSPSMG00000008503) #17	KLC1 (ENSPSMG00000008791) #18	COA8 (ENSPSMG00000008856) #20	BAG5 (ENSPSMG00000008861) #19	TRMT61A (ENSPSMG00000008869) #21	CKB (ENSPSMG00000008887) #22	ENSPSMG00000008893	ENSPSMG00000008895 #23	ENSPSMG00000008906 #23
Bushbaby	MODERN SPECIES	169				KIF26A (ENSOGAG00000032573) #10	ASPG (ENSOGAG00000024653) #11	TDRD9 (ENSOGAG00000007626) #13	RD3L (ENSOGAG00000027245) #12	ENSOGAG00000033456	PPP1R13B (ENSOGAG00000015434) #15	ZFYVE21 (ENSOGAG00000015430) #16	XRCC3 (ENSOGAG00000015428) #17	KLC1 (ENSOGAG00000015420) #18	COA8 (ENSOGAG00000015416) #20	BAG5 (ENSOGAG00000031671) #19	TRMT61A (ENSOGAG00000027762) #21	CKB (ENSOGAG00000026224) #22	ENSOGAG00000027526	LGALS3 (ENSOGAG00000003473)	MAPK1IP1L (ENSOGAG00000003471)	SOCS4 (ENSOGAG00000003470)	WDHD1 (ENSOGAG00000003465)	GCH1 (ENSOGAG00000006341)	SAMD4A (ENSOGAG00000009678)	CGRRF1 (ENSOGAG00000009674)	GMFB (ENSOGAG00000009669)	CNIH1 (ENSOGAG00000024582)	CDKN3 (ENSOGAG00000009667)	BMP4 (ENSOGAG00000031354)	ENSOGAG00000025273	ENSOGAG00000017230	FERMT2 (ENSOGAG00000010017)
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.b ##25	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Tarsier	MODERN SPECIES	2310																ENSTSYG00000033930 #22
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00510000048283.d #8	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.b ##25	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000165819	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.k.a #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00390000016478.i.b ##25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	825	MIDEAS (ENSANAG00000029623)	PNMA1 (ENSANAG00000019370)	DNAL1 (ENSANAG00000030053)	ACOT6 (ENSANAG00000011051)	ACOT4 (ENSANAG00000020773)	ENSANAG00000025037	HEATR4 (ENSANAG00000026083)	RIOX1 (ENSANAG00000018079)	NUMB (ENSANAG00000031899)	PAPLN (ENSANAG00000021965)	PSEN1 (ENSANAG00000026358)	ENSANAG00000036030	ENSANAG00000005418	RBM25 (ENSANAG00000028295)	ENSANAG00000020412	ENSANAG00000020515 #22	ENSANAG00000021022	ZFYVE1 (ENSANAG00000019269)	DCAF4 (ENSANAG00000033863)	DPF3 (ENSANAG00000024095)	ENSANAG00000035122	RGS6 (ENSANAG00000032870)	SIPA1L1 (ENSANAG00000038424)	ENSANAG00000030114	ENSANAG00000020317	PCNX1 (ENSANAG00000020800)	ENSANAG00000025022	MAP3K9 (ENSANAG00000001676)	TTC9 (ENSANAG00000022265)	MED6 (ENSANAG00000020299)	ENSANAG00000021730
Mas night monkey	MODERN SPECIES	831	TMEM179 (ENSANAG00000033576) #8	ENSANAG00000031898	C14orf180 (ENSANAG00000027878) #9	KIF26A (ENSANAG00000036661) #10	ASPG (ENSANAG00000025896) #11	TDRD9 (ENSANAG00000020949) #13	RD3L (ENSANAG00000026776) #12	ENSANAG00000019756	PPP1R13B (ENSANAG00000028500) #15	ZFYVE21 (ENSANAG00000027320) #16	XRCC3 (ENSANAG00000028646) #17	ENSANAG00000028747 #18	COA8 (ENSANAG00000020280) #20	BAG5 (ENSANAG00000035539) #19	TRMT61A (ENSANAG00000020615) #21	ENSANAG00000028580 #22	ENSANAG00000038119	MARK3 (ENSANAG00000022809) #23	ENSANAG00000037390 ##25	TNFAIP2 (ENSANAG00000021205) #27	EXOC3L4 (ENSANAG00000036047) #28	LBHD2 (ENSANAG00000015116) #29	CDC42BPB (ENSANAG00000026973) #30	AMN (ENSANAG00000026321) #31	TRAF3 (ENSANAG00000022729) #32	ENSANAG00000037392	RCOR1 (ENSANAG00000036522) #33	ANKRD9 (ENSANAG00000013963)	TECPR2 (ENSANAG00000035963) #34	ENSANAG00000029137 #35	ZNF839 (ENSANAG00000032749) #36
Cebidae	ANCESTRAL SPECIES	3	ENSGT00510000048283.d #8	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.k.a #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d.d
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00510000048283.d #8	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000165819	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.k.a #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d.d
Bolivian squirrel monkey	MODERN SPECIES	98	TMEM179 (ENSSBOG00000033653) #8	C14orf180 (ENSSBOG00000020567) #9	KIF26A (ENSSBOG00000025778) #10	ASPG (ENSSBOG00000032975) #11	ENSSBOG00000020362	TDRD9 (ENSSBOG00000027466) #13	RD3L (ENSSBOG00000035782) #12	ENSSBOG00000006745	PPP1R13B (ENSSBOG00000030285) #15	ZFYVE21 (ENSSBOG00000026863) #16	XRCC3 (ENSSBOG00000028542) #17	KLC1 (ENSSBOG00000029112) #18	COA8 (ENSSBOG00000019622) #20	BAG5 (ENSSBOG00000001198) #19	TRMT61A (ENSSBOG00000022999) #21	ENSSBOG00000027968 #22	MARK3 (ENSSBOG00000033976) #23	ENSSBOG00000034185	ENSSBOG00000024395	ENSSBOG00000025966 ##25	ENSSBOG00000029015	TNFAIP2 (ENSSBOG00000022024) #27	EXOC3L4 (ENSSBOG00000019447) #28	LBHD2 (ENSSBOG00000021611) #29	CDC42BPB (ENSSBOG00000027833) #30	AMN (ENSSBOG00000035221) #31	TRAF3 (ENSSBOG00000011271) #32	RCOR1 (ENSSBOG00000027987) #33	TECPR2 (ENSSBOG00000029184) #34	CINP (ENSSBOG00000014042) #35	ZNF839 (ENSSBOG00000011469) #36
Capuchin	MODERN SPECIES	338	ENSCCAG00000025725	ENSCCAG00000031711 #9	KIF26A (ENSCCAG00000020022) #10	ASPG (ENSCCAG00000014047) #11	RD3L (ENSCCAG00000034127) #12	TDRD9 (ENSCCAG00000022528) #13	ENSCCAG00000012217	ENSCCAG00000035325	PPP1R13B (ENSCCAG00000033609) #15	ZFYVE21 (ENSCCAG00000027784) #16	XRCC3 (ENSCCAG00000038040) #17	KLC1 (ENSCCAG00000018360) #18	COA8 (ENSCCAG00000024599) #20	BAG5 (ENSCCAG00000030035) #19	TRMT61A (ENSCCAG00000021969) #21	CKB (ENSCCAG00000036759) #22	MARK3 (ENSCCAG00000027915) #23	EIF5 (ENSCCAG00000018461) #25	ENSCCAG00000019593
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.k.b #22
Mas night monkey	MODERN SPECIES	1336																ENSANAG00000000458 #22	GCC2 (ENSANAG00000020924)	ENSANAG00000035997	SULT1C4 (ENSANAG00000020463)	SULT1C2 (ENSANAG00000017162)	SULT1C3 (ENSANAG00000003613)	ENSANAG00000024378	SLC5A7 (ENSANAG00000023945)	ST6GAL2 (ENSANAG00000025290)	ENSANAG00000027234	ENSANAG00000027260
Cebidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.k.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.k.b #22
Bolivian squirrel monkey	MODERN SPECIES	94	KCTD17 (ENSSBOG00000030009)	MPST (ENSSBOG00000034388)	TST (ENSSBOG00000034621)	TEX33 (ENSSBOG00000034578)	CSF2RB (ENSSBOG00000021764)	NCF4 (ENSSBOG00000024948)	PVALB (ENSSBOG00000026884)	IFT27 (ENSSBOG00000016486)	CACNG2 (ENSSBOG00000033704)	EIF3D (ENSSBOG00000032811)	FOXRED2 (ENSSBOG00000033703)	TXN2 (ENSSBOG00000030716)	MYH9 (ENSSBOG00000030902)	APOL2 (ENSSBOG00000017347)	RBFOX2 (ENSSBOG00000028291)	ENSSBOG00000031659 #22	ENSSBOG00000031135	MB (ENSSBOG00000021573)	RASD2 (ENSSBOG00000028390)	MCM5 (ENSSBOG00000035769)	HMOX1 (ENSSBOG00000000291)	TOM1 (ENSSBOG00000024056)	HMGXB4 (ENSSBOG00000028618)	ISX (ENSSBOG00000016181)	LARGE1 (ENSSBOG00000025240)	SYN3 (ENSSBOG00000022799)	TIMP3 (ENSSBOG00000020035)	FBXO7 (ENSSBOG00000034715)	ENSSBOG00000027198	ENSSBOG00000029780
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.l #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.l #22
Marmoset	MODERN SPECIES	1	INF2 (ENSCJAG00000009247) #7	ENSCJAG00000057715	TMEM179 (ENSCJAG00000069879) #8	ENSCJAG00000007904 #9	KIF26A (ENSCJAG00000017272) #10	RD3L (ENSCJAG00000082473) #12	TDRD9 (ENSCJAG00000017235) #13	ATP5MJ (ENSCJAG00000044960) #14	PPP1R13B (ENSCJAG00000017204) #15	ZFYVE21 (ENSCJAG00000017190) #16	XRCC3 (ENSCJAG00000017182) #17	KLC1 (ENSCJAG00000017134) #18	COA8 (ENSCJAG00000044883) #20	BAG5 (ENSCJAG00000017123) #19	TRMT61A (ENSCJAG00000017117) #21	CKB (ENSCJAG00000012790) #22	MARK3 (ENSCJAG00000038489) #23	ENSCJAG00000017104 #25	ENSCJAG00000086072	TNFAIP2 (ENSCJAG00000017086) #27	EXOC3L4 (ENSCJAG00000017071) #28	LBHD2 (ENSCJAG00000048188) #29	CDC42BPB (ENSCJAG00000003298) #30	AMN (ENSCJAG00000003281) #31	TRAF3 (ENSCJAG00000009729) #32	RCOR1 (ENSCJAG00000009784) #33	ANKRD9 (ENSCJAG00000009811)	TECPR2 (ENSCJAG00000009815) #34	CINP (ENSCJAG00000009870) #35	ZNF839 (ENSCJAG00000009880) #36	MOK (ENSCJAG00000009899) #37
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Hominidae	ANCESTRAL SPECIES	14	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01090000263418	ENSGT00910000148592	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Gorilla	MODERN SPECIES	5	INF2 (ENSGGOG00000014158) #7	TMEM179 (ENSGGOG00000013426) #8	C14orf180 (ENSGGOG00000014934) #9	ENSGGOG00000010761	KIF26A (ENSGGOG00000015026) #10	ASPG (ENSGGOG00000003238) #11	RD3L (ENSGGOG00000038139) #12	TDRD9 (ENSGGOG00000000812) #13	PPP1R13B (ENSGGOG00000009600) #15	ZFYVE21 (ENSGGOG00000009593) #16	XRCC3 (ENSGGOG00000009589) #17	KLC1 (ENSGGOG00000009580) #18	COA8 (ENSGGOG00000043278) #20	BAG5 (ENSGGOG00000001790) #19	TRMT61A (ENSGGOG00000007401) #21	ENSGGOG00000007394 #22	MARK3 (ENSGGOG00000007387) #23	ENSGGOG00000041315	ENSGGOG00000023407 #27	EXOC3L4 (ENSGGOG00000016704) #28	LBHD2 (ENSGGOG00000044036) #29	CDC42BPB (ENSGGOG00000004285) #30	ENSGGOG00000004279 #31	TRAF3 (ENSGGOG00000004273) #32	ENSGGOG00000041502	RCOR1 (ENSGGOG00000005323) #33	ENSGGOG00000037648	TECPR2 (ENSGGOG00000003523) #34	CINP (ENSGGOG00000006071) #35	ZNF839 (ENSGGOG00000006061) #36	MOK (ENSGGOG00000006052) #37
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01090000263418	ENSGT00910000148592	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Human	MODERN SPECIES	5	C14orf180 (ENSG00000184601) #9	TMEM179 (ENSG00000258986) #8	KIF26A (ENSG00000066735) #10	ASPG (ENSG00000166183) #11	RD3L (ENSG00000227729) #12	TDRD9 (ENSG00000156414) #13	ATP5MJ (ENSG00000156411) #14	PPP1R13B (ENSG00000088808) #15	ZFYVE21 (ENSG00000100711) #16	XRCC3 (ENSG00000126215) #17	ENSG00000256500	COA8 (ENSG00000256053) #20	KLC1 (ENSG00000126214) #18	BAG5 (ENSG00000166170) #19	TRMT61A (ENSG00000166166) #21	CKB (ENSG00000166165) #22	MARK3 (ENSG00000075413) #23	ENSG00000291313	EIF5 (ENSG00000100664) #25	TNFAIP2 (ENSG00000185215) #27	EXOC3L4 (ENSG00000205436) #28	LBHD2 (ENSG00000283071) #29	CDC42BPB (ENSG00000198752) #30	AMN (ENSG00000166126) #31	TRAF3 (ENSG00000131323) #32	RCOR1 (ENSG00000089902) #33	ANKRD9 (ENSG00000156381)	TECPR2 (ENSG00000196663) #34	CINP (ENSG00000100865) #35	ZNF839 (ENSG00000022976) #36	MOK (ENSG00000080823) #37
Pan	ANCESTRAL SPECIES	8	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00910000148592	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Chimpanzee	MODERN SPECIES	5	ENSPTRG00000049533	C14H14orf180 (ENSPTRG00000006769) #9	ENSPTRG00000048997	KIF26A (ENSPTRG00000033926) #10	ASPG (ENSPTRG00000006766) #11	RD3L (ENSPTRG00000047159) #12	TDRD9 (ENSPTRG00000006765) #13	ATP5MJ (ENSPTRG00000006764) #14	PPP1R13B (ENSPTRG00000006763) #15	ZFYVE21 (ENSPTRG00000006762) #16	XRCC3 (ENSPTRG00000006761) #17	KLC1 (ENSPTRG00000006760) #18	COA8 (ENSPTRG00000043726) #20	BAG5 (ENSPTRG00000006758) #19	TRMT61A (ENSPTRG00000006757) #21	CKB (ENSPTRG00000006756) #22	MARK3 (ENSPTRG00000006754) #23	EIF5 (ENSPTRG00000006753) #25	ENSPTRG00000050082	TNFAIP2 (ENSPTRG00000006749) #27	EXOC3L4 (ENSPTRG00000030661) #28	LBHD2 (ENSPTRG00000051370) #29	CDC42BPB (ENSPTRG00000006748) #30	AMN (ENSPTRG00000006747) #31	TRAF3 (ENSPTRG00000006746) #32	RCOR1 (ENSPTRG00000006744) #33	ANKRD9 (ENSPTRG00000006743)	TECPR2 (ENSPTRG00000024401) #34	CINP (ENSPTRG00000006741) #35	ZNF839 (ENSPTRG00000006740) #36	MOK (ENSPTRG00000006738) #37
Bonobo	MODERN SPECIES	5	TMEM179 (ENSPPAG00000039000) #8	C14orf180 (ENSPPAG00000041150) #9	ENSPPAG00000032971	KIF26A (ENSPPAG00000037737) #10	ASPG (ENSPPAG00000000731) #11	TDRD9 (ENSPPAG00000027180) #13	RD3L (ENSPPAG00000025116) #12	ENSPPAG00000034328 #14	PPP1R13B (ENSPPAG00000043472) #15	ENSPPAG00000039040 #16	XRCC3 (ENSPPAG00000038589) #17	KLC1 (ENSPPAG00000036216) #18	COA8 (ENSPPAG00000021372) #20	BAG5 (ENSPPAG00000018351) #19	TRMT61A (ENSPPAG00000027799) #21	ENSPPAG00000019639 #22	MARK3 (ENSPPAG00000030786) #23	EIF5 (ENSPPAG00000039883) #25	ENSPPAG00000014698	TNFAIP2 (ENSPPAG00000027880) #27	EXOC3L4 (ENSPPAG00000026559) #28	LBHD2 (ENSPPAG00000017372) #29	CDC42BPB (ENSPPAG00000043371) #30	AMN (ENSPPAG00000033035) #31	TRAF3 (ENSPPAG00000028105) #32	ENSPPAG00000006421 #33	TECPR2 (ENSPPAG00000036325) #34	CINP (ENSPPAG00000025476) #35	ZNF839 (ENSPPAG00000027810) #36	MOK (ENSPPAG00000029403) #37	WDR20 (ENSPPAG00000037285)
Orangutan	MODERN SPECIES	5	ENSPPYG00000006186	ENSPPYG00000006185 #9	ENSPPYG00000039613	KIF26A (ENSPPYG00000006182) #10	ASPG (ENSPPYG00000006181) #11	RD3L (ENSPPYG00000041192) #12	TDRD9 (ENSPPYG00000006180) #13	ENSPPYG00000041171 #14	PPP1R13B (ENSPPYG00000006179) #15	ZFYVE21 (ENSPPYG00000006178) #16	XRCC3 (ENSPPYG00000006177) #17	KLC1 (ENSPPYG00000006175) #18	ENSPPYG00000006174 #20	ENSPPYG00000041007 #19	TRMT61A (ENSPPYG00000006172) #21	CKB (ENSPPYG00000006171) #22	MARK3 (ENSPPYG00000006170) #23	EIF5 (ENSPPYG00000006169) #25	TNFAIP2 (ENSPPYG00000006166) #27	EXOC3L4 (ENSPPYG00000006165) #28	CDC42BPB (ENSPPYG00000006164) #30	AMN (ENSPPYG00000006163) #31	TRAF3 (ENSPPYG00000006162) #32	RCOR1 (ENSPPYG00000006161) #33	ANKRD9 (ENSPPYG00000006160)	TECPR2 (ENSPPYG00000006159) #34	CINP (ENSPPYG00000006158) #35	ZNF839 (ENSPPYG00000006157) #36	MOK (ENSPPYG00000006155) #37	WDR20 (ENSPPYG00000006154)	HSP90AA1 (ENSPPYG00000006153)
Gibbon	MODERN SPECIES	14	TMEM179 (ENSNLEG00000016307) #8	ENSNLEG00000016306	ENSNLEG00000016298 #9	KIF26A (ENSNLEG00000016290) #10	ASPG (ENSNLEG00000016278) #11	TDRD9 (ENSNLEG00000016251) #13	RD3L (ENSNLEG00000029602) #12	ENSNLEG00000016248 #14	PPP1R13B (ENSNLEG00000016238) #15	ZFYVE21 (ENSNLEG00000033101) #16	XRCC3 (ENSNLEG00000016212) #17	KLC1 (ENSNLEG00000016208) #18	COA8 (ENSNLEG00000028956) #20	BAG5 (ENSNLEG00000016206) #19	ENSNLEG00000016202 #21	CKB (ENSNLEG00000016174) #22	MARK3 (ENSNLEG00000016129) #23	EIF5 (ENSNLEG00000027211) #25	ENSNLEG00000016091 #27	ENSNLEG00000016089 #28	ENSNLEG00000028415 #29	CDC42BPB (ENSNLEG00000016074) #30	TRAF3 (ENSNLEG00000016049) #32	RCOR1 (ENSNLEG00000029157) #33	ENSNLEG00000035545	TECPR2 (ENSNLEG00000016024) #34	CINP (ENSNLEG00000016009) #35	ZNF839 (ENSNLEG00000015996) #36	MOK (ENSNLEG00000015986) #37	WDR20 (ENSNLEG00000015977)	HSP90AA1 (ENSNLEG00000015925)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Rhinopithecus	ANCESTRAL SPECIES	8	ENSGT00910000147394	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.ib #14	ENSGT00390000016760.jb.a #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00720000108839.b	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Golden snub-nosed monkey	MODERN SPECIES	2871									PPP1R13B (ENSRROG00000042853) #15	ZFYVE21 (ENSRROG00000034527) #16	XRCC3 (ENSRROG00000035019) #17	KLC1 (ENSRROG00000034856) #18	COA8 (ENSRROG00000042485) #20	BAG5 (ENSRROG00000042247) #19	TRMT61A (ENSRROG00000042448) #21	ENSRROG00000039088 #22	MARK3 (ENSRROG00000034327) #23	ENSRROG00000043289	EIF5 (ENSRROG00000037169) #25	ENSRROG00000027605	TNFAIP2 (ENSRROG00000039057) #27	EXOC3L4 (ENSRROG00000040920) #28	LBHD2 (ENSRROG00000034363) #29	CDC42BPB (ENSRROG00000034604) #30	TRAF3 (ENSRROG00000045084) #32	RCOR1 (ENSRROG00000033826) #33	ENSRROG00000019641	TECPR2 (ENSRROG00000042303) #34	CINP (ENSRROG00000045478) #35	ZNF839 (ENSRROG00000039783) #36	MOK (ENSRROG00000045030) #37
Black snub-nosed monkey	MODERN SPECIES	1533													ENSRBIG00000039874 #20	BAG5 (ENSRBIG00000041428) #19	TRMT61A (ENSRBIG00000042669) #21	ENSRBIG00000044871 #22	MARK3 (ENSRBIG00000044239) #23	ENSRBIG00000038446 #25	ENSRBIG00000021907	TNFAIP2 (ENSRBIG00000008664) #27	EXOC3L4 (ENSRBIG00000033350) #28	LBHD2 (ENSRBIG00000007850) #29	CDC42BPB (ENSRBIG00000028315) #30	AMN (ENSRBIG00000036374) #31	TRAF3 (ENSRBIG00000044448) #32	RCOR1 (ENSRBIG00000038321) #33	ENSRBIG00000006177	TECPR2 (ENSRBIG00000031794) #34	CINP (ENSRBIG00000019672) #35	ZNF839 (ENSRBIG00000040573) #36	ENSRBIG00000031609 #37
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00390000012831.b	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Vervet Monkey	MODERN SPECIES	188																ENSCSAG00000017901 #22
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00510000048283.d #8	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Macaca	ANCESTRAL SPECIES	1	ENSGT00510000048283.d #8	ENSGT00860000136327	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.b.b	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.b.a.b	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.a.b.b.b.a.b.a.a	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Rhesus	MODERN SPECIES	17	TMEM179 (ENSMMUG00000029177) #8	C7H14orf180 (ENSMMUG00000050660) #9	ENSMMUG00000063241	KIF26A (ENSMMUG00000009477) #10	ASPG (ENSMMUG00000014295) #11	ENSMMUG00000055793	RD3L (ENSMMUG00000001698) #12	TDRD9 (ENSMMUG00000006243) #13	ATP5MJ (ENSMMUG00000004915) #14	PPP1R13B (ENSMMUG00000018123) #15	ZFYVE21 (ENSMMUG00000018121) #16	XRCC3 (ENSMMUG00000029181) #17	KLC1 (ENSMMUG00000006803) #18	BAG5 (ENSMMUG00000017005) #19	TRMT61A (ENSMMUG00000007673) #21	CKB (ENSMMUG00000049145) #22	ENSMMUG00000051448	MARK3 (ENSMMUG00000003641) #23	EIF5 (ENSMMUG00000005630) #25	ENSMMUG00000061910	ENSMMUG00000051640	TNFAIP2 (ENSMMUG00000021634) #27	EXOC3L4 (ENSMMUG00000029186) #28	LBHD2 (ENSMMUG00000048661) #29	CDC42BPB (ENSMMUG00000008380) #30	AMN (ENSMMUG00000039505) #31	ENSMMUG00000011751	TRAF3 (ENSMMUG00000011752) #32	ENSMMUG00000019552	RCOR1 (ENSMMUG00000005845) #33	ENSMMUG00000055215
Pig-tailed macaque	MODERN SPECIES	160	ENSMNEG00000044790	TMEM179 (ENSMNEG00000000690) #8	C14orf180 (ENSMNEG00000044931) #9	KIF26A (ENSMNEG00000037576) #10	ASPG (ENSMNEG00000043858) #11	RD3L (ENSMNEG00000037706) #12	TDRD9 (ENSMNEG00000044098) #13	ENSMNEG00000041294 #14	PPP1R13B (ENSMNEG00000044596) #15	ZFYVE21 (ENSMNEG00000034393) #16	XRCC3 (ENSMNEG00000028725) #17	KLC1 (ENSMNEG00000028461) #18	COA8 (ENSMNEG00000043157) #20	BAG5 (ENSMNEG00000040925) #19	TRMT61A (ENSMNEG00000036125) #21	CKB (ENSMNEG00000038352) #22	MARK3 (ENSMNEG00000029707) #23
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000165819	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Olive baboon	MODERN SPECIES	17	ENSPANG00000010776 #7	TMEM179 (ENSPANG00000016733) #8	C14orf180 (ENSPANG00000037690) #9	KIF26A (ENSPANG00000000883) #10	ASPG (ENSPANG00000000882) #11	TDRD9 (ENSPANG00000004811) #13	RD3L (ENSPANG00000017601) #12	ENSPANG00000031228	PPP1R13B (ENSPANG00000016275) #15	ZFYVE21 (ENSPANG00000016273) #16	XRCC3 (ENSPANG00000015712) #17	KLC1 (ENSPANG00000012335) #18	COA8 (ENSPANG00000004813) #20	BAG5 (ENSPANG00000017498) #19	TRMT61A (ENSPANG00000007028) #21	CKB (ENSPANG00000006942) #22	MARK3 (ENSPANG00000000644) #23	EIF5 (ENSPANG00000004814) #25	TNFAIP2 (ENSPANG00000016599) #27	EXOC3L4 (ENSPANG00000021764) #28	LBHD2 (ENSPANG00000029706) #29	CDC42BPB (ENSPANG00000025197) #30	AMN (ENSPANG00000016601) #31	TRAF3 (ENSPANG00000018050) #32	RCOR1 (ENSPANG00000018049) #33	TECPR2 (ENSPANG00000018047) #34	CINP (ENSPANG00000033670) #35	ZNF839 (ENSPANG00000025531) #36	MOK (ENSPANG00000017500) #37	WDR20 (ENSPANG00000012337)	HSP90AA1 (ENSPANG00000021967)
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000165819	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00910000147412	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Drill	MODERN SPECIES	1071									PPP1R13B (ENSMLEG00000034583) #15	ZFYVE21 (ENSMLEG00000037745) #16	XRCC3 (ENSMLEG00000043504) #17	KLC1 (ENSMLEG00000033740) #18	COA8 (ENSMLEG00000041876) #20	BAG5 (ENSMLEG00000033188) #19	TRMT61A (ENSMLEG00000027585) #21	ENSMLEG00000033501 #22	ENSMLEG00000035313	MARK3 (ENSMLEG00000038559) #23	EIF5 (ENSMLEG00000035191) #25	TNFAIP2 (ENSMLEG00000044100) #27	EXOC3L4 (ENSMLEG00000042355) #28	LBHD2 (ENSMLEG00000002402) #29	CDC42BPB (ENSMLEG00000036361) #30	AMN (ENSMLEG00000043700) #31	TRAF3 (ENSMLEG00000032977) #32	RCOR1 (ENSMLEG00000031095) #33	ENSMLEG00000039221	TECPR2 (ENSMLEG00000030025) #34	CINP (ENSMLEG00000037611) #35	ZNF839 (ENSMLEG00000028083) #36	MOK (ENSMLEG00000042545) #37
Sooty mangabey	MODERN SPECIES	249	ENSCATG00000040734	ENSCATG00000020497	C14orf180 (ENSCATG00000027034) #9	KIF26A (ENSCATG00000035120) #10	ASPG (ENSCATG00000038024) #11	RD3L (ENSCATG00000030191) #12	TDRD9 (ENSCATG00000032905) #13	ENSCATG00000040699	PPP1R13B (ENSCATG00000043796) #15	ZFYVE21 (ENSCATG00000030160) #16	XRCC3 (ENSCATG00000043378) #17	KLC1 (ENSCATG00000031713) #18	COA8 (ENSCATG00000036924) #20	BAG5 (ENSCATG00000034339) #19	TRMT61A (ENSCATG00000000028) #21	CKB (ENSCATG00000044021) #22	MARK3 (ENSCATG00000042055) #23	EIF5 (ENSCATG00000044001) #25	TNFAIP2 (ENSCATG00000019272) #27	EXOC3L4 (ENSCATG00000043501) #28	LBHD2 (ENSCATG00000044011) #29	CDC42BPB (ENSCATG00000017326) #30	AMN (ENSCATG00000040408) #31	TRAF3 (ENSCATG00000018109) #32	ENSCATG00000029606	RCOR1 (ENSCATG00000029458) #33	ANKRD9 (ENSCATG00000019355)	TECPR2 (ENSCATG00000030527) #34	CINP (ENSCATG00000035509) #35	ZNF839 (ENSCATG00000038367) #36	MOK (ENSCATG00000026368) #37
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Tree shrew	MODERN SPECIES	10495																CKB (ENSTBEG00000005675) #22
Glires	ANCESTRAL SPECIES	12	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Lagomorpha	ANCESTRAL SPECIES	132							ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b.t	ENSGT00940000156103
Pika	MODERN SPECIES	3028															TRMT61A (ENSOPRG00000009039) #21	CKB (ENSOPRG00000009015) #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	484								ASPG (ENSOCUG00000023219) #11	TDRD9 (ENSOCUG00000014788) #13	RD3L (ENSOCUG00000039245) #12	ENSOCUG00000017262 #14	PPP1R13B (ENSOCUG00000010462) #15	ENSOCUG00000023816 #16	XRCC3 (ENSOCUG00000024574) #17	KLC1 (ENSOCUG00000012446) #18	ENSOCUG00000008818 #22	TRMT61A (ENSOCUG00000022502) #21	MARK3 (ENSOCUG00000016664) #23	ENSOCUG00000036466	EIF5 (ENSOCUG00000027975) #25	TNFAIP2 (ENSOCUG00000011484) #27	EXOC3L4 (ENSOCUG00000023363) #28	ENSOCUG00000038309 #29	CDC42BPB (ENSOCUG00000010323) #30	TRAF3 (ENSOCUG00000003672) #32	TECPR2 (ENSOCUG00000015804) #34	RCOR1 (ENSOCUG00000003324) #33	CINP (ENSOCUG00000026866) #35	ZNF839 (ENSOCUG00000014486) #36	MOK (ENSOCUG00000013870) #37	WDR20 (ENSOCUG00000001281)
Rabbit	MODERN SPECIES	433	LDOC1 (ENSOCUG00000023824)	ENSOCUG00000024673	ENSOCUG00000036101	ENSOCUG00000025072	SOX3 (ENSOCUG00000016779)	ENSOCUG00000025136	ENSOCUG00000012140	ENSOCUG00000022633	ATP11C (ENSOCUG00000013087)	MCF2 (ENSOCUG00000027534)	F9 (ENSOCUG00000005240)	ENSOCUG00000030193	ENSOCUG00000033447	ENSOCUG00000012713	ENSOCUG00000006218	ENSOCUG00000027525 #22	ZIC3 (ENSOCUG00000009358)	ENSOCUG00000032516	ENSOCUG00000035410
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Muroidea	ANCESTRAL SPECIES	16	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Golden Hamster	MODERN SPECIES	630	Inf2 (ENSMAUG00000009995) #7	Tmem179 (ENSMAUG00000001149) #8	A530016L24Rik (ENSMAUG00000009851) #9	Kif26a (ENSMAUG00000020776) #10	Aspg (ENSMAUG00000015535) #11	Tdrd9 (ENSMAUG00000020617) #13	Rd3l (ENSMAUG00000013408) #12	ENSMAUG00000012836 #14	Ppp1r13b (ENSMAUG00000001128) #15	ENSMAUG00000021878 #16	Xrcc3 (ENSMAUG00000021117) #17	ENSMAUG00000004564 #18	Coa8 (ENSMAUG00000019799) #20	Bag5 (ENSMAUG00000012615) #19	Trmt61a (ENSMAUG00000007728) #21	Ckb (ENSMAUG00000012909) #22	Mark3 (ENSMAUG00000009057) #23	Eif5 (ENSMAUG00000001058) #25	Tnfaip2 (ENSMAUG00000012833) #27	Exoc3l4 (ENSMAUG00000022110) #28	Lbhd2 (ENSMAUG00000020246)	Cdc42bpb (ENSMAUG00000022059) #30	Traf3 (ENSMAUG00000021686) #32	Ankrd9 (ENSMAUG00000019567)	Tecpr2 (ENSMAUG00000011919) #34	ENSMAUG00000000734 #35	Zfp839 (ENSMAUG00000001267) #36	Mok (ENSMAUG00000015386) #37	ENSMAUG00000020978	1700001K19Rik (ENSMAUG00000019531)	Dync1h1 (ENSMAUG00000022224)
Chinese hamster chok1gshd	MODERN SPECIES	266	Inf2 (ENSCGRG00001003961) #7	Tmem179 (ENSCGRG00001018078) #8	A530016L24Rik (ENSCGRG00001020089) #9	Kif26a (ENSCGRG00001017284) #10	Aspg (ENSCGRG00001020993) #11	Tdrd9 (ENSCGRG00001023336) #13	Rd3l (ENSCGRG00001000482) #12	Atp5mpl (ENSCGRG00001000674) #14	Ppp1r13b (ENSCGRG00001004903) #15	Zfyve21 (ENSCGRG00001009837) #16	Xrcc3 (ENSCGRG00001011253) #17	Klc1 (ENSCGRG00001013287) #18	Coa8 (ENSCGRG00001020208) #20	Bag5 (ENSCGRG00001014270) #19	Trmt61a (ENSCGRG00001020952) #21	Ckb (ENSCGRG00001021206) #22	Mark3 (ENSCGRG00001017890) #23	ENSCGRG00001023334 #25	Gm266 (ENSCGRG00001014678)	Tnfaip2 (ENSCGRG00001008498) #27	Exoc3l4 (ENSCGRG00001011425) #28	Lbhd2 (ENSCGRG00001012003)	Cdc42bpb (ENSCGRG00001017235) #30	Amn (ENSCGRG00001010221) #31	Traf3 (ENSCGRG00001012901) #32	Rcor1 (ENSCGRG00001020214) #33	Ankrd9 (ENSCGRG00001021240)	Tecpr2 (ENSCGRG00001022916) #34	Cinp (ENSCGRG00001004209) #35	ENSCGRG00001010768 #36	Mok (ENSCGRG00001012968) #37
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Northern American deer mouse	MODERN SPECIES	5	Inf2 (ENSPEMG00000000569) #7	Tmem179 (ENSPEMG00000012685) #8	A530016L24Rik (ENSPEMG00000001566) #9	Kif26a (ENSPEMG00000007760) #10	Aspg (ENSPEMG00000009783) #11	Rd3l (ENSPEMG00000017732) #12	Tdrd9 (ENSPEMG00000012496) #13	ENSPEMG00000024643 #14	Ppp1r13b (ENSPEMG00000014348) #15	Zfyve21 (ENSPEMG00000023106) #16	Xrcc3 (ENSPEMG00000012323) #17	Klc1 (ENSPEMG00000015453) #18	Coa8 (ENSPEMG00000013261) #20	Bag5 (ENSPEMG00000030905) #19	Trmt61a (ENSPEMG00000023413) #21	Ckb (ENSPEMG00000017185) #22	Mark3 (ENSPEMG00000010472) #23	Eif5 (ENSPEMG00000015312) #25	Gm266 (ENSPEMG00000029489)	Tnfaip2 (ENSPEMG00000000511) #27	Exoc3l4 (ENSPEMG00000006944) #28	Lbhd2 (ENSPEMG00000024190)	Cdc42bpb (ENSPEMG00000023339) #30	Amn (ENSPEMG00000006540) #31	Traf3 (ENSPEMG00000022996) #32	Rcor1 (ENSPEMG00000028079) #33	Ankrd9 (ENSPEMG00000024255)	Tecpr2 (ENSPEMG00000021467) #34	Cinp (ENSPEMG00000022134) #35	Zfp839 (ENSPEMG00000024097) #36	Mok (ENSPEMG00000022583) #37
Prairie vole	MODERN SPECIES		Inf2 (ENSMOCG00000015901) #7	Tmem179 (ENSMOCG00000019593) #8	A530016L24Rik (ENSMOCG00000005085) #9	Kif26a (ENSMOCG00000001640) #10	Aspg (ENSMOCG00000011052) #11	ENSMOCG00000006567	Tdrd9 (ENSMOCG00000017012) #13	Atp5mpl (ENSMOCG00000018303) #14	Ppp1r13b (ENSMOCG00000017048) #15	Zfyve21 (ENSMOCG00000013746) #16	Xrcc3 (ENSMOCG00000008144) #17	Klc1 (ENSMOCG00000016748) #18	Coa8 (ENSMOCG00000018572) #20	Bag5 (ENSMOCG00000015176) #19	Trmt61a (ENSMOCG00000014726) #21	Ckb (ENSMOCG00000014242) #22	Mark3 (ENSMOCG00000018347) #23	ENSMOCG00000021790 #25	Tnfaip2 (ENSMOCG00000011420) #27	Exoc3l4 (ENSMOCG00000004296) #28	Lbhd2 (ENSMOCG00000018196)	Cdc42bpb (ENSMOCG00000021696) #30	ENSMOCG00000017882	Amn (ENSMOCG00000001893) #31	Traf3 (ENSMOCG00000017772) #32	Rcor1 (ENSMOCG00000012999) #33	Ankrd9 (ENSMOCG00000002881)	Tecpr2 (ENSMOCG00000000369) #34	Cinp (ENSMOCG00000019159) #35	Mok (ENSMOCG00000016493) #37	ENSMOCG00000018133
Murinae	ANCESTRAL SPECIES	8	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00860000135782	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Mus	ANCESTRAL SPECIES	10	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00900000143791	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00860000135782	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Mus_A	ANCESTRAL SPECIES	17	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00900000143791	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00860000135782	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Mus_B	ANCESTRAL SPECIES	17	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00900000143791	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00860000135782	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Mus_C	ANCESTRAL SPECIES	11	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00900000143791	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00860000135782	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
spretus	MODERN SPECIES	3	Tmem179 (MGP_SPRETEiJ_G0019000) #8	A530016L24Rik (MGP_SPRETEiJ_G0018999) #9	MGP_SPRETEiJ_G0018998	Kif26a (MGP_SPRETEiJ_G0018997) #10	Aspg (MGP_SPRETEiJ_G0018996) #11	Rd3l (MGP_SPRETEiJ_G0018995) #12	Tdrd9 (MGP_SPRETEiJ_G0018994) #13	Atp5mpl (MGP_SPRETEiJ_G0018993) #14	Ppp1r13b (MGP_SPRETEiJ_G0018992) #15	Zfyve21 (MGP_SPRETEiJ_G0018991) #16	Xrcc3 (MGP_SPRETEiJ_G0018990) #17	Klc1 (MGP_SPRETEiJ_G0018989) #18	Coa8 (MGP_SPRETEiJ_G0018988) #20	Bag5 (MGP_SPRETEiJ_G0018987) #19	Trmt61a (MGP_SPRETEiJ_G0018986) #21	Ckb (MGP_SPRETEiJ_G0018985) #22	Mark3 (MGP_SPRETEiJ_G0018984) #23	Eif5 (MGP_SPRETEiJ_G0018983) #25	Gm266 (MGP_SPRETEiJ_G0018982)	Tnfaip2 (MGP_SPRETEiJ_G0018981) #27	Exoc3l4 (MGP_SPRETEiJ_G0018980) #28	Lbhd2 (MGP_SPRETEiJ_G0018979)	Cdc42bpb (MGP_SPRETEiJ_G0018978) #30	Amn (MGP_SPRETEiJ_G0018977) #31	Traf3 (MGP_SPRETEiJ_G0018976) #32	MGP_SPRETEiJ_G0018975	Rcor1 (MGP_SPRETEiJ_G0018974) #33	Ankrd9 (MGP_SPRETEiJ_G0018973)	Tecpr2 (MGP_SPRETEiJ_G0018972) #34	Cinp (MGP_SPRETEiJ_G0018971) #35	Zfp839 (MGP_SPRETEiJ_G0018970) #36
Steppe mouse	MODERN SPECIES	3176													ENSMSIG00000010681 #20	Bag5 (ENSMSIG00000010672) #19	Trmt61a (ENSMSIG00000010648) #21	Ckb (ENSMSIG00000010628) #22	Mark3 (ENSMSIG00000009190) #23	ENSMSIG00000009125	Eif5 (ENSMSIG00000008970) #25	Gm266 (ENSMSIG00000008953)	Tnfaip2 (ENSMSIG00000008909) #27	ENSMSIG00000008902	Exoc3l4 (ENSMSIG00000008877) #28	Lbhd2 (ENSMSIG00000008862)	ENSMSIG00000008843	Cdc42bpb (ENSMSIG00000008716) #30	Amn (ENSMSIG00000008673) #31	Traf3 (ENSMSIG00000008575) #32	ENSMSIG00000008566	ENSMSIG00000008556 #33	Ankrd9 (ENSMSIG00000008520)
Mouse	MODERN SPECIES	3	Inf2 (ENSMUSG00000037679) #7	Tmem179 (ENSMUSG00000054013) #8	A530016L24Rik (ENSMUSG00000043122) #9	Kif26a (ENSMUSG00000021294) #10	Aspg (ENSMUSG00000037686) #11	Rd3l (ENSMUSG00000091402) #12	Tdrd9 (ENSMUSG00000054003) #13	Atp5mpl (ENSMUSG00000021290) #14	Ppp1r13b (ENSMUSG00000021285) #15	Zfyve21 (ENSMUSG00000021286) #16	Xrcc3 (ENSMUSG00000021287) #17	Klc1 (ENSMUSG00000021288) #18	Coa8 (ENSMUSG00000037787) #20	Bag5 (ENSMUSG00000049792) #19	Trmt61a (ENSMUSG00000060950) #21	Ckb (ENSMUSG00000001270) #22	Mark3 (ENSMUSG00000007411) #23	Eif5 (ENSMUSG00000021282) #25	ENSMUSG00000121570	Gm266 (ENSMUSG00000010529)	Tnfaip2 (ENSMUSG00000021281) #27	Exoc3l4 (ENSMUSG00000021280) #28	Lbhd2 (ENSMUSG00000087075)	Cdc42bpb (ENSMUSG00000021279) #30	Amn (ENSMUSG00000021278) #31	Traf3 (ENSMUSG00000021277) #32	Rcor1 (ENSMUSG00000037896) #33	Ankrd9 (ENSMUSG00000037904)	Tecpr2 (ENSMUSG00000021275) #34	Cinp (ENSMUSG00000021276) #35	Zfp839 (ENSMUSG00000021271) #36
Ryukyu mouse	MODERN SPECIES	3	Tmem179 (MGP_CAROLIEiJ_G0018151) #8	A530016L24Rik (MGP_CAROLIEiJ_G0018150) #9	MGP_CAROLIEiJ_G0018149	Kif26a (MGP_CAROLIEiJ_G0018148) #10	Aspg (MGP_CAROLIEiJ_G0018147) #11	Rd3l (MGP_CAROLIEiJ_G0018146) #12	Tdrd9 (MGP_CAROLIEiJ_G0018145) #13	Atp5mpl (MGP_CAROLIEiJ_G0018144) #14	Ppp1r13b (MGP_CAROLIEiJ_G0018143) #15	Zfyve21 (MGP_CAROLIEiJ_G0018142) #16	Xrcc3 (MGP_CAROLIEiJ_G0018141) #17	Klc1 (MGP_CAROLIEiJ_G0018140) #18	MGP_CAROLIEiJ_G0018139 #20	Bag5 (MGP_CAROLIEiJ_G0018138) #19	Trmt61a (MGP_CAROLIEiJ_G0018137) #21	Ckb (MGP_CAROLIEiJ_G0018136) #22	Mark3 (MGP_CAROLIEiJ_G0018135) #23	MGP_CAROLIEiJ_G0018134 #25	Gm266 (MGP_CAROLIEiJ_G0018133)	Tnfaip2 (MGP_CAROLIEiJ_G0018132) #27	Exoc3l4 (MGP_CAROLIEiJ_G0018131) #28	Lbhd2 (MGP_CAROLIEiJ_G0018130)	Cdc42bpb (MGP_CAROLIEiJ_G0018129) #30	Amn (MGP_CAROLIEiJ_G0018128) #31	Traf3 (MGP_CAROLIEiJ_G0018127) #32	MGP_CAROLIEiJ_G0018126	Rcor1 (MGP_CAROLIEiJ_G0018125) #33	Ankrd9 (MGP_CAROLIEiJ_G0018124)	Tecpr2 (MGP_CAROLIEiJ_G0018123) #34	MGP_CAROLIEiJ_G0018122 #35	Zfp839 (MGP_CAROLIEiJ_G0018121) #36
Shrew mouse	MODERN SPECIES	20	Tmem179 (MGP_PahariEiJ_G0029908) #8	A530016L24Rik (MGP_PahariEiJ_G0029907) #9	MGP_PahariEiJ_G0029906	Kif26a (MGP_PahariEiJ_G0029905) #10	Aspg (MGP_PahariEiJ_G0029904) #11	Rd3l (MGP_PahariEiJ_G0029903) #12	Tdrd9 (MGP_PahariEiJ_G0029902) #13	Atp5mpl (MGP_PahariEiJ_G0029901) #14	Ppp1r13b (MGP_PahariEiJ_G0029900) #15	Zfyve21 (MGP_PahariEiJ_G0029899) #16	Xrcc3 (MGP_PahariEiJ_G0029898) #17	Klc1 (MGP_PahariEiJ_G0029897) #18	Coa8 (MGP_PahariEiJ_G0029896) #20	Bag5 (MGP_PahariEiJ_G0029895) #19	Trmt61a (MGP_PahariEiJ_G0029894) #21	Ckb (MGP_PahariEiJ_G0029893) #22	Mark3 (MGP_PahariEiJ_G0029892) #23	Eif5 (MGP_PahariEiJ_G0029891) #25	Gm266 (MGP_PahariEiJ_G0029890)	Tnfaip2 (MGP_PahariEiJ_G0029889) #27	Exoc3l4 (MGP_PahariEiJ_G0029888) #28	Lbhd2 (MGP_PahariEiJ_G0029887)	Cdc42bpb (MGP_PahariEiJ_G0029886) #30	Amn (MGP_PahariEiJ_G0029885) #31	Traf3 (MGP_PahariEiJ_G0029884) #32	MGP_PahariEiJ_G0029883	Rcor1 (MGP_PahariEiJ_G0029882) #33	Ankrd9 (MGP_PahariEiJ_G0029881)	Tecpr2 (MGP_PahariEiJ_G0029880) #34	MGP_PahariEiJ_G0029879 #35	Zfp839 (MGP_PahariEiJ_G0029878) #36
Rat	MODERN SPECIES	16	Inf2 (ENSRNOG00000028650) #7	Tmem179 (ENSRNOG00000013128) #8	C6h14orf180 (ENSRNOG00000013097) #9	Kif26a (ENSRNOG00000013661) #10	Aspg (ENSRNOG00000012843) #11	Rd3l (ENSRNOG00000043031) #12	Tdrd9 (ENSRNOG00000053631) #13	ENSRNOG00000068254 #14	Ppp1r13b (ENSRNOG00000012653) #15	Zfyve21 (ENSRNOG00000012185) #16	Xrcc3 (ENSRNOG00000012141) #17	Klc1 (ENSRNOG00000011572) #18	Coa8 (ENSRNOG00000011542) #20	Bag5 (ENSRNOG00000058841) #19	Trmt61a (ENSRNOG00000011398) #21	Ckb (ENSRNOG00000010872) #22	Mark3 (ENSRNOG00000010330) #23	Eif5 (ENSRNOG00000010218) #25	Diras3 (ENSRNOG00000068695)	Tnfaip2 (ENSRNOG00000010165) #27	AABR07065589.1 (ENSRNOG00000053429)	Exoc3l4 (ENSRNOG00000010111) #28	Lbhd2 (ENSRNOG00000043137)	Cdc42bpb (ENSRNOG00000009675) #30	Amn (ENSRNOG00000009050) #31	Traf3 (ENSRNOG00000008145) #32	ENSRNOG00000062855	Rcor1 (ENSRNOG00000049783) #33	Ankrd9 (ENSRNOG00000008056)	Tecpr2 (ENSRNOG00000021904) #34	Cinp (ENSRNOG00000008035) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1886				Kif26a (ENSNGAG00000021429) #10	Aspg (ENSNGAG00000016677) #11	Tdrd9 (ENSNGAG00000021858) #13	Rd3l (ENSNGAG00000021769) #12	Atp5mpl (ENSNGAG00000021885) #14	ENSNGAG00000015662 #15	Zfyve21 (ENSNGAG00000020752) #16	ENSNGAG00000022009 #17	Klc1 (ENSNGAG00000022246) #18	Coa8 (ENSNGAG00000018482) #20	Bag5 (ENSNGAG00000020903) #19	Trmt61a (ENSNGAG00000021119) #21	Ckb (ENSNGAG00000002315) #22	Mark3 (ENSNGAG00000010679) #23	Eif5 (ENSNGAG00000023359) #25	Tnfaip2 (ENSNGAG00000015194) #27	Exoc3l4 (ENSNGAG00000023525) #28	Lbhd2 (ENSNGAG00000021417)	Cdc42bpb (ENSNGAG00000003840) #30	Amn (ENSNGAG00000023699) #31	Traf3 (ENSNGAG00000011396) #32	Rcor1 (ENSNGAG00000011313) #33	Ankrd9 (ENSNGAG00000013700)	Tecpr2 (ENSNGAG00000021277) #34	Cinp (ENSNGAG00000022938) #35	Zfp839 (ENSNGAG00000023594) #36	Mok (ENSNGAG00000024041) #37	ENSNGAG00000014985
Lesser Egyptian jerboa	MODERN SPECIES	122	Adssl1 (ENSJJAG00000012984)	Inf2 (ENSJJAG00000023781) #7	Tmem179 (ENSJJAG00000021084) #8	A530016L24Rik (ENSJJAG00000020219) #9	Kif26a (ENSJJAG00000000781) #10	Aspg (ENSJJAG00000022213) #11	Tdrd9 (ENSJJAG00000022462) #13	ENSJJAG00000020211 #14	ENSJJAG00000018703 #15	Zfyve21 (ENSJJAG00000016650) #16	Xrcc3 (ENSJJAG00000013625) #17	Klc1 (ENSJJAG00000014112) #18	ENSJJAG00000003577 #20	Bag5 (ENSJJAG00000000717) #19	Trmt61a (ENSJJAG00000000428) #21	Ckb (ENSJJAG00000022169) #22	Mark3 (ENSJJAG00000022266) #23	Eif5 (ENSJJAG00000011403) #25	Otub2 (ENSJJAG00000018693)	Ddx24 (ENSJJAG00000010842)	Ppp4r4 (ENSJJAG00000021389)	Serpina10 (ENSJJAG00000015823)	Serpina6 (ENSJJAG00000014466)	ENSJJAG00000014013	ENSJJAG00000024304	Serpina11 (ENSJJAG00000010522)	Serpina12 (ENSJJAG00000009472)	Serpina5 (ENSJJAG00000020864)	ENSJJAG00000017595	Gsc (ENSJJAG00000014492)	Dicer1 (ENSJJAG00000010766)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Hystricomorpha	ANCESTRAL SPECIES	51	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Hystricomorpha_a	ANCESTRAL SPECIES	58	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a.p.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Hystricomorpha_b	ANCESTRAL SPECIES	92	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a.p.a #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Degu	DUPLICATION
Degu	MODERN SPECIES	267	AKT1 (ENSODEG00000002014)	ENSODEG00000002046	ADSS1 (ENSODEG00000002065)	INF2 (ENSODEG00000002088) #7	TMEM179 (ENSODEG00000002119) #8	KIF26A (ENSODEG00000002137) #10	ASPG (ENSODEG00000002164) #11	TDRD9 (ENSODEG00000002255) #13	ENSODEG00000002459 #14	ENSODEG00000002481 #15	ZFYVE21 (ENSODEG00000002496) #16	XRCC3 (ENSODEG00000002520) #17	KLC1 (ENSODEG00000002575) #18	COA8 (ENSODEG00000002642) #20	TRMT61A (ENSODEG00000001775) #21	ENSODEG00000001805 #22	MARK3 (ENSODEG00000001890) #23	ENSODEG00000018808	ENSODEG00000002043 #25	TNFAIP2 (ENSODEG00000002077) #27	EXOC3L4 (ENSODEG00000002116) #28	CDC42BPB (ENSODEG00000002217) #30	AMN (ENSODEG00000002431) #31	TRAF3 (ENSODEG00000002457) #32	RCOR1 (ENSODEG00000002491) #33	ANKRD9 (ENSODEG00000002556)	ENSODEG00000002569 #34	CINP (ENSODEG00000002583) #35	ENSODEG00000002597 #37	WDR20 (ENSODEG00000002622)	ENSODEG00000002636
Degu	MODERN SPECIES	45	SLC25A3 (ENSODEG00000009995)	ENSODEG00000010948	APAF1 (ENSODEG00000010122)	ENSODEG00000019813	ENSODEG00000010313	ENSODEG00000010573	ENSODEG00000010991	ENSODEG00000010669	ENSODEG00000011572	BLTP3B (ENSODEG00000010196)	ENSODEG00000010649	ENSODEG00000011114	SLC17A8 (ENSODEG00000010869)	NR1H4 (ENSODEG00000012027)	ENSODEG00000010407	ENSODEG00000009780 #22	ANO4 (ENSODEG00000011009)	ENSODEG00000010202	SLC5A8 (ENSODEG00000010696)	UTP20 (ENSODEG00000013411)	ENSODEG00000010531	SPIC (ENSODEG00000010078)	ENSODEG00000010424	MYBPC1 (ENSODEG00000012077)	CHPT1 (ENSODEG00000011230)	SYCP3 (ENSODEG00000011961)	GNPTAB (ENSODEG00000012289)	DRAM1 (ENSODEG00000011613)	WASHC3 (ENSODEG00000010588)	NUP37 (ENSODEG00000011637)	PARPBP (ENSODEG00000012004)
Guinea pig	MODERN SPECIES	111	ADSS1 (ENSCPOG00000009566)	INF2 (ENSCPOG00000015219) #7	ENSCPOG00000039530 #8	KIF26A (ENSCPOG00000019833) #10	ASPG (ENSCPOG00000026114) #11	RD3L (ENSCPOG00000036429) #12	TDRD9 (ENSCPOG00000002760) #13	ENSCPOG00000033733 #14	PPP1R13B (ENSCPOG00000021000) #15	ZFYVE21 (ENSCPOG00000024426) #16	XRCC3 (ENSCPOG00000022422) #17	KLC1 (ENSCPOG00000026901) #18	COA8 (ENSCPOG00000013098) #20	BAG5 (ENSCPOG00000024833) #19	TRMT61A (ENSCPOG00000033200) #21	CKB (ENSCPOG00000032248) #22	MARK3 (ENSCPOG00000013946) #23	EIF5 (ENSCPOG00000001236) #25	TNFAIP2 (ENSCPOG00000010932) #27	EXOC3L4 (ENSCPOG00000010016) #28	LBHD2 (ENSCPOG00000030081) #29	CDC42BPB (ENSCPOG00000003812) #30	AMN (ENSCPOG00000022870) #31	TRAF3 (ENSCPOG00000040090) #32	RCOR1 (ENSCPOG00000011410) #33	ANKRD9 (ENSCPOG00000010220)	TECPR2 (ENSCPOG00000000207) #34	CINP (ENSCPOG00000034861) #35	ENSCPOG00000021691 #37	ENSCPOG00000035139	WDR20 (ENSCPOG00000002483)
Naked mole-rat female	MODERN SPECIES	18	ADSS1 (ENSHGLG00000010136)	ENSHGLG00000011755 #7	TMEM179 (ENSHGLG00000047899) #8	KIF26A (ENSHGLG00000005481) #10	ASPG (ENSHGLG00000005952) #11	RD3L (ENSHGLG00000047639) #12	TDRD9 (ENSHGLG00000007727) #13	ENSHGLG00000036711 #14	PPP1R13B (ENSHGLG00000006763) #15	ZFYVE21 (ENSHGLG00000011494) #16	XRCC3 (ENSHGLG00000011996) #17	KLC1 (ENSHGLG00000006287) #18	ENSHGLG00000011330 #20	ENSHGLG00000050617 #19	TRMT61A (ENSHGLG00000005604) #21	CKB (ENSHGLG00000005770) #22	MARK3 (ENSHGLG00000007571) #23	EIF5 (ENSHGLG00000015043) #25	TNFAIP2 (ENSHGLG00000015741) #27	EXOC3L4 (ENSHGLG00000013564) #28	LBHD2 (ENSHGLG00000045160) #29	CDC42BPB (ENSHGLG00000018068) #30	AMN (ENSHGLG00000015524) #31	ENSHGLG00000036396	TRAF3 (ENSHGLG00000049736) #32	RCOR1 (ENSHGLG00000005778) #33	ENSHGLG00000008270 #34	CINP (ENSHGLG00000045981) #35	ENSHGLG00000032701 #36	ENSHGLG00000009939	ENSHGLG00000045892
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862.b #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005010617 #9	ENSSVLG00005010660	KIF26A (ENSSVLG00005010683) #10	ASPG (ENSSVLG00005010927) #11	TDRD9 (ENSSVLG00005011123) #13	RD3L (ENSSVLG00005011833) #12	ENSSVLG00005011879 #14	PPP1R13B (ENSSVLG00005011931) #15	ZFYVE21 (ENSSVLG00005012130) #16	ENSSVLG00005012176 #17	KLC1 (ENSSVLG00005012331) #18	ENSSVLG00005012491 #17	COA8 (ENSSVLG00005012532) #20	BAG5 (ENSSVLG00005012632) #19	TRMT61A (ENSSVLG00005012687) #21	ENSSVLG00005012740 #22	ENSSVLG00005012973 #23	EIF5 (ENSSVLG00005013171) #25	ENSSVLG00005013280	TNFAIP2 (ENSSVLG00005013312) #27	EXOC3L4 (ENSSVLG00005013432) #28	LBHD2 (ENSSVLG00005013492) #29	CDC42BPB (ENSSVLG00005013599) #30	AMN (ENSSVLG00005013683) #31	TRAF3 (ENSSVLG00005013900) #32	RCOR1 (ENSSVLG00005014032) #33	ANKRD9 (ENSSVLG00005014170)	TECPR2 (ENSSVLG00005014246) #34	CINP (ENSSVLG00005014319) #35	ZNF839 (ENSSVLG00005014407) #36	MOK (ENSSVLG00005014536) #37
Eurasian red squirrel	MODERN SPECIES	12	RHOT1 (ENSSVLG00005016781)	RHBDL3 (ENSSVLG00005016946)	C17orf75 (ENSSVLG00005017088)	ZNF207 (ENSSVLG00005017171)	ENSSVLG00005017498	CDK5R1 (ENSSVLG00005017534)	MYO1D (ENSSVLG00005017566)	ENSSVLG00005017677	TMEM98 (ENSSVLG00005017715)	ENSSVLG00005017765	ASIC2 (ENSSVLG00005017834)	ENSSVLG00005018047	ENSSVLG00005018082	ENSSVLG00005018128	ENSSVLG00005018180	ENSSVLG00005018242 #22	ENSSVLG00005018284	ENSSVLG00005018440	ENSSVLG00005018536	ENSSVLG00005018675	ENSSVLG00005018739	PTPN18 (ENSSVLG00005018932)	ENSSVLG00005019214	ENSSVLG00005019266	GPR148 (ENSSVLG00005019335)	AMER3 (ENSSVLG00005019403)	ENSSVLG00005019688	FAM168B (ENSSVLG00005019958)	PLEKHB2 (ENSSVLG00005020018)	ENSSVLG00005020090	HS6ST1 (ENSSVLG00005020153)
Marmotini	ANCESTRAL SPECIES	27	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862.b #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Marmotini_b	ANCESTRAL SPECIES	99	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862.b #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Arctic ground squirrel	MODERN SPECIES	320	ENSUPAG00010018585 #7	ENSUPAG00010018579 #7	TMEM179 (ENSUPAG00010018572) #8	ENSUPAG00010018557 #9	KIF26A (ENSUPAG00010018523) #10	ASPG (ENSUPAG00010018503) #11	RD3L (ENSUPAG00010018456) #12	TDRD9 (ENSUPAG00010018401) #13	ENSUPAG00010018391 #14	PPP1R13B (ENSUPAG00010018373) #15	ZFYVE21 (ENSUPAG00010018360) #16	XRCC3 (ENSUPAG00010018352) #17	KLC1 (ENSUPAG00010018171) #18	BAG5 (ENSUPAG00010018162) #19	TRMT61A (ENSUPAG00010018157) #21	CKB (ENSUPAG00010018151) #22	MARK3 (ENSUPAG00010017955) #23	ENSUPAG00010017935 ##25	ENSUPAG00010017927	TNFAIP2 (ENSUPAG00010017901) #27	EXOC3L4 (ENSUPAG00010017874) #28	ENSUPAG00010017871	CDC42BPB (ENSUPAG00010017808) #30	AMN (ENSUPAG00010017783) #31	TRAF3 (ENSUPAG00010017758) #32	RCOR1 (ENSUPAG00010017704) #33
Squirrel	MODERN SPECIES	221	INF2 (ENSSTOG00000022460) #7	TMEM179 (ENSSTOG00000022354) #8	KIF26A (ENSSTOG00000021225) #10	ASPG (ENSSTOG00000023161) #11	TDRD9 (ENSSTOG00000007890) #13	ENSSTOG00000002831	RD3L (ENSSTOG00000026241) #12	ATP5MJ (ENSSTOG00000007883) #14	PPP1R13B (ENSSTOG00000010345) #15	ZFYVE21 (ENSSTOG00000010336) #16	XRCC3 (ENSSTOG00000027100) #17	KLC1 (ENSSTOG00000014074) #18	COA8 (ENSSTOG00000019873) #20	BAG5 (ENSSTOG00000027571) #19	TRMT61A (ENSSTOG00000009792) #21	CKB (ENSSTOG00000023632) #22	MARK3 (ENSSTOG00000009776) #23	EIF5 (ENSSTOG00000003683) #25	ENSSTOG00000022018	ENSSTOG00000028490	EXOC3L4 (ENSSTOG00000004186) #28	ENSSTOG00000026145	KRIT1 (ENSSTOG00000022767)	CYP51A1 (ENSSTOG00000006693)	AKAP9 (ENSSTOG00000006585)	MTERF1 (ENSSTOG00000001846)	FZD1 (ENSSTOG00000013482)	CDK14 (ENSSTOG00000013466)	PTTG1IP2 (ENSSTOG00000030927)	CLDN12 (ENSSTOG00000013464)	GTPBP10 (ENSSTOG00000008220)
Alpin marmot	MODERN SPECIES	1	ADSS1 (ENSMMMG00000005086)	ENSMMMG00000005003 #8	ENSMMMG00000004995 #9	KIF26A (ENSMMMG00000004945) #10	ASPG (ENSMMMG00000004917) #11	TDRD9 (ENSMMMG00000004862) #13	RD3L (ENSMMMG00000004838) #12	ENSMMMG00000004833 #14	PPP1R13B (ENSMMMG00000004811) #15	ZFYVE21 (ENSMMMG00000004805) #16	XRCC3 (ENSMMMG00000004791) #17	KLC1 (ENSMMMG00000004526) #18	COA8 (ENSMMMG00000004518) #20	BAG5 (ENSMMMG00000004510) #19	TRMT61A (ENSMMMG00000004492) #21	CKB (ENSMMMG00000004465) #22	MARK3 (ENSMMMG00000004239) #23	EIF5 (ENSMMMG00000004136) #25	ENSMMMG00000004126	TNFAIP2 (ENSMMMG00000004097) #27	EXOC3L4 (ENSMMMG00000004056) #28	LBHD2 (ENSMMMG00000004048) #29	ENSMMMG00000004030	CDC42BPB (ENSMMMG00000003965) #30	TRAF3 (ENSMMMG00000003876) #32	RCOR1 (ENSMMMG00000003851) #33	ANKRD9 (ENSMMMG00000003841)	TECPR2 (ENSMMMG00000003754) #34	CINP (ENSMMMG00000003712) #35	ENSMMMG00000003710 #36	MOK (ENSMMMG00000003666) #37
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000018085.a.a.a.a	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Equus	ANCESTRAL SPECIES	17	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000018085.a.a.a.a	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT01050000244818.t.g.b.a	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Donkey	MODERN SPECIES	27	ENSEASG00005038486 #9	KIF26A (ENSEASG00005004267) #10	ASPG (ENSEASG00005004249) #11	ENSEASG00005007833	RD3L (ENSEASG00005034783) #12	TDRD9 (ENSEASG00005004203) #13	ATP5MJ (ENSEASG00005032475) #14	PPP1R13B (ENSEASG00005004182) #15	ZFYVE21 (ENSEASG00005004176) #16	XRCC3 (ENSEASG00005004170) #17	KLC1 (ENSEASG00005004151) #18	COA8 (ENSEASG00005038668) #20	BAG5 (ENSEASG00005026372) #19	ENSEASG00005004131	TRMT61A (ENSEASG00005004127) #21	CKB (ENSEASG00005013821) #22	MARK3 (ENSEASG00005004106) #23	ENSEASG00005004096	EIF5 (ENSEASG00005004086) #25	ENSEASG00005004073	TNFAIP2 (ENSEASG00005004057) #27	EXOC3L4 (ENSEASG00005004047) #28	LBHD2 (ENSEASG00005004041) #29	CDC42BPB (ENSEASG00005004017) #30	AMN (ENSEASG00005004014) #31	TRAF3 (ENSEASG00005004011) #32	RCOR1 (ENSEASG00005003999) #33	ENSEASG00005036749	ENSEASG00005029668 #34	CINP (ENSEASG00005003976) #35	ZNF839 (ENSEASG00005037124) #36
Horse	MODERN SPECIES	16	C24H14orf180 (ENSECAG00000004388) #9	KIF26A (ENSECAG00000018772) #10	ASPG (ENSECAG00000013195) #11	ENSECAG00000050675	RD3L (ENSECAG00000036061) #12	TDRD9 (ENSECAG00000023843) #13	ATP5MJ (ENSECAG00000049034) #14	PPP1R13B (ENSECAG00000017405) #15	ZFYVE21 (ENSECAG00000016309) #16	XRCC3 (ENSECAG00000009189) #17	KLC1 (ENSECAG00000014904) #18	COA8 (ENSECAG00000013355) #20	ENSECAG00000029582	BAG5 (ENSECAG00000006244) #19	TRMT61A (ENSECAG00000012599) #21	CKB (ENSECAG00000009054) #22	MARK3 (ENSECAG00000016955) #23	ENSECAG00000034523	EIF5 (ENSECAG00000012597) #25	ENSECAG00000037072	TNFAIP2 (ENSECAG00000011704) #27	EXOC3L4 (ENSECAG00000009801) #28	ENSECAG00000039552	CDC42BPB (ENSECAG00000021040) #30	AMN (ENSECAG00000026806) #31	TRAF3 (ENSECAG00000037175) #32	ENSECAG00000045340	RCOR1 (ENSECAG00000012168) #33	ENSECAG00000006098	TECPR2 (ENSECAG00000021106) #34	CINP (ENSECAG00000019092) #35
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000165819	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Megabat	MODERN SPECIES	2864																CKB (ENSPVAG00000001216) #22	MARK3 (ENSPVAG00000001215) #23
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000165819	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Microbat	MODERN SPECIES	1713															PPP1R13B (ENSMLUG00000008333) #15	ENSMLUG00000029605 #22	MARK3 (ENSMLUG00000015922) #23	EIF5 (ENSMLUG00000000882) #25
Greater horseshoe bat	MODERN SPECIES	24	INF2 (ENSRFEG00010001988) #7	TMEM179 (ENSRFEG00010002066) #8	ENSRFEG00010002091 #9	KIF26A (ENSRFEG00010002187) #10	ASPG (ENSRFEG00010002245) #11	TDRD9 (ENSRFEG00010002295) #13	ENSRFEG00010002350	ENSRFEG00010002374 #14	PPP1R13B (ENSRFEG00010002487) #15	ZFYVE21 (ENSRFEG00010002643) #16	XRCC3 (ENSRFEG00010002686) #17	KLC1 (ENSRFEG00010002772) #18	COA8 (ENSRFEG00010002871) #20	ENSRFEG00010002907 #19	TRMT61A (ENSRFEG00010002919) #21	CKB (ENSRFEG00010002936) #22	MARK3 (ENSRFEG00010003085) #23	EIF5 (ENSRFEG00010003270) #25	ENSRFEG00010003301	TNFAIP2 (ENSRFEG00010003320) #27	EXOC3L4 (ENSRFEG00010003373) #28	LBHD2 (ENSRFEG00010003420) #29	CDC42BPB (ENSRFEG00010003452) #30	AMN (ENSRFEG00010003508) #31	TRAF3 (ENSRFEG00010003548) #32	RCOR1 (ENSRFEG00010003600) #33	ENSRFEG00010003629	ANKRD9 (ENSRFEG00010003651)	TECPR2 (ENSRFEG00010003672) #34	CINP (ENSRFEG00010003704) #35	ZNF839 (ENSRFEG00010003743) #36
Carnivora	ANCESTRAL SPECIES		ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00390000016760.c.a.a.a #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Caniformia	ANCESTRAL SPECIES	15	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.m #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.m #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00900000143542	ENSGT00950000182772.A.a.b.n.a #22	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Dingo	MODERN SPECIES	161	ENSCAFG00020008266	ENSCAFG00020008299 #7	TMEM179 (ENSCAFG00020008514) #8	ENSCAFG00020008518 #9	KIF26A (ENSCAFG00020008539) #10	ASPG (ENSCAFG00020008565) #11	TDRD9 (ENSCAFG00020008631) #13	RD3L (ENSCAFG00020008680) #12	ATP5MJ (ENSCAFG00020008682) #14	PPP1R13B (ENSCAFG00020008687) #15	ZFYVE21 (ENSCAFG00020008695) #16	XRCC3 (ENSCAFG00020008703) #17	COA8 (ENSCAFG00020008714) #20	BAG5 (ENSCAFG00020008719) #19	TRMT61A (ENSCAFG00020008720) #21	ENSCAFG00020008724 #22	MARK3 (ENSCAFG00020008747) #23	EIF5 (ENSCAFG00020008755) #25	ENSCAFG00020008767	TNFAIP2 (ENSCAFG00020008776) #27	EXOC3L4 (ENSCAFG00020008816) #28	ENSCAFG00020008844	ENSCAFG00020008868 ##30	CDC42BPB (ENSCAFG00020008877) #30	AMN (ENSCAFG00020008904) #31	TRAF3 (ENSCAFG00020008921) #32	RCOR1 (ENSCAFG00020008964) #33	ANKRD9 (ENSCAFG00020009068)	TECPR2 (ENSCAFG00020009071) #34	CINP (ENSCAFG00020009073) #35	ZNF839 (ENSCAFG00020009076) #36
Dog	MODERN SPECIES	36	ADSSL1 (ENSCAFG00845021664)	TMEM179 (ENSCAFG00845021480) #8	C8H14orf180 (ENSCAFG00845021444) #9	KIF26A (ENSCAFG00845021077) #10	ENSCAFG00845020802 #11	RD3L (ENSCAFG00845020748) #12	TDRD9 (ENSCAFG00845020420) #13	ATP5MJ (ENSCAFG00845020355) #14	PPP1R13B (ENSCAFG00845020095) #15	ZFYVE21 (ENSCAFG00845019992) #16	XRCC3 (ENSCAFG00845019939) #17	KLC1 (ENSCAFG00845019294) #18	COA8 (ENSCAFG00845019102) #20	BAG5 (ENSCAFG00845019070) #19	TRMT61A (ENSCAFG00845019044) #21	ENSCAFG00845018958 #22	MARK3 (ENSCAFG00845018426) #23	EIF5 (ENSCAFG00845018209) #25	ENSCAFG00845017991	TNFAIP2 (ENSCAFG00845017908) #27	EXOC3L4 (ENSCAFG00845017731) #28	ENSCAFG00845017673 #29	ENSCAFG00845017642 #22	CDC42BPB (ENSCAFG00845017189) #30	AMN (ENSCAFG00845017022) #31	TRAF3 (ENSCAFG00845016806) #32	RCOR1 (ENSCAFG00845016544) #33	ANKRD9 (ENSCAFG00845016509)	TECPR2 (ENSCAFG00845016041) #34	CINP (ENSCAFG00845015873) #35	ZNF839 (ENSCAFG00845005744) #36
Red fox	MODERN SPECIES	93	INF2 (ENSVVUG00000002759) #7	TMEM179 (ENSVVUG00000002741) #8	ENSVVUG00000002734 #9	KIF26A (ENSVVUG00000002653) #10	ASPG (ENSVVUG00000002615) #11	TDRD9 (ENSVVUG00000002584) #13	RD3L (ENSVVUG00000002573) #12	PPP1R13B (ENSVVUG00000001129) #15	ZFYVE21 (ENSVVUG00000001046) #16	XRCC3 (ENSVVUG00000000935) #17	ENSVVUG00000000890	KLC1 (ENSVVUG00000000793) #18	COA8 (ENSVVUG00000000768) #20	BAG5 (ENSVVUG00000000764) #19	TRMT61A (ENSVVUG00000000754) #21	CKB (ENSVVUG00000000586) #22	MARK3 (ENSVVUG00000000529) #23	EIF5 (ENSVVUG00000000498) #25	ENSVVUG00000000435	TNFAIP2 (ENSVVUG00000000417) #27	EXOC3L4 (ENSVVUG00000000278) #28	LBHD2 (ENSVVUG00000000262) #29	CDC42BPB (ENSVVUG00000000207) #30	TRAF3 (ENSVVUG00000000150) #32	RCOR1 (ENSVVUG00000028847) #33	TECPR2 (ENSVVUG00000028842) #34	CINP (ENSVVUG00000028840) #35	MOK (ENSVVUG00000028839) #37	WDR20 (ENSVVUG00000028838)	HSP90AA1 (ENSVVUG00000028646)	ENSVVUG00000028638
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.n.a #22
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000154482.b.b.a	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000156103	ENSGT00520000057711	ENSGT01020000230401.a.a.b.b.t.b.h	ENSGT00390000007686.b.d	ENSGT00940000159582 #37	ENSGT00390000002751 #36	ENSGT00390000015784 #35	ENSGT00940000157283 #34	ENSGT00390000018116	ENSGT00940000155654 #33	ENSGT00940000160538 #32	ENSGT00390000007463 #31	ENSGT01030000234517.H.a #30	ENSGT00950000182772.A.a.b.n.a #22	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT01030000234613.b.a.a #27	ENSGT00940000164852	ENSGT00390000016478.i.a #25	ENSGT00940000154862 #23	ENSGT00950000182772.A.a.b.m #22	ENSGT00940000154239.a #21	ENSGT00940000158888 #19	ENSGT00390000008212 #20	ENSGT00940000155555 #18	ENSGT00930000151053 #17	ENSGT00940000159639 #16	ENSGT00940000153463.a #15	ENSGT00390000016760.c.b #14
Dog	DUPLICATION
Dog	MODERN SPECIES	36	ENSCAFG00845004471	RTL1 (ENSCAFG00845004485)	PPP2R5C (ENSCAFG00845005387)	DYNC1H1 (ENSCAFG00845005454)	HSP90AA1 (ENSCAFG00845005495)	WDR20 (ENSCAFG00845005541)	MOK (ENSCAFG00845005653) #37	ZNF839 (ENSCAFG00845005744) #36	CINP (ENSCAFG00845015873) #35	TECPR2 (ENSCAFG00845016041) #34	ANKRD9 (ENSCAFG00845016509)	RCOR1 (ENSCAFG00845016544) #33	TRAF3 (ENSCAFG00845016806) #32	AMN (ENSCAFG00845017022) #31	CDC42BPB (ENSCAFG00845017189) #30	ENSCAFG00845017642 #22	ENSCAFG00845017673 #29	EXOC3L4 (ENSCAFG00845017731) #28	TNFAIP2 (ENSCAFG00845017908) #27	ENSCAFG00845017991	EIF5 (ENSCAFG00845018209) #25	MARK3 (ENSCAFG00845018426) #23	ENSCAFG00845018958 #22	TRMT61A (ENSCAFG00845019044) #21	BAG5 (ENSCAFG00845019070) #19	COA8 (ENSCAFG00845019102) #20	KLC1 (ENSCAFG00845019294) #18	XRCC3 (ENSCAFG00845019939) #17	ZFYVE21 (ENSCAFG00845019992) #16	PPP1R13B (ENSCAFG00845020095) #15	ATP5MJ (ENSCAFG00845020355) #14
Dog	MODERN SPECIES	6	SPIC (ENSCAFG00845007650)	MYBPC1 (ENSCAFG00845007866)	CHPT1 (ENSCAFG00845008274)	GNPTAB (ENSCAFG00845008537)	DRAM1 (ENSCAFG00845008892)	ENSCAFG00845008937	WASHC3 (ENSCAFG00845008957)	NUP37 (ENSCAFG00845008993)	PARPBP (ENSCAFG00845009146)	PMCH (ENSCAFG00845009246)	IGF1 (ENSCAFG00845009366)	PAH (ENSCAFG00845009553)	ASCL1 (ENSCAFG00845009710)	STAB2 (ENSCAFG00845009872)	NT5DC3 (ENSCAFG00845010184)	ENSCAFG00845010352 #22	HSP90B1 (ENSCAFG00845010421)	UQCC6 (ENSCAFG00845010622)	TDG (ENSCAFG00845010683)	GLT8D2 (ENSCAFG00845010772)	HCFC2 (ENSCAFG00845010878)	NFYB (ENSCAFG00845011102)	SMARCA5 (ENSCAFG00845011175)	ENSCAFG00845011402	GYPA (ENSCAFG00845011416)	HHIP (ENSCAFG00845011571)	ANAPC10 (ENSCAFG00845011688)	ABCE1 (ENSCAFG00845011788)	OTUD4 (ENSCAFG00845011956)	SMAD1 (ENSCAFG00845012104)	MMAA (ENSCAFG00845012165)
Canidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.n.b #22
Canis_lupus	ANCESTRAL SPECIES		ENSGT00530000063335.B.a.b	ENSGT00990000204089	ENSGT00940000158634	ENSGT00390000005811	ENSGT00940000156639	ENSGT00390000015476.d.b	ENSGT00390000005250	ENSGT00940000158126	ENSGT00950000183030.m.a.b.a.a.a	ENSGT00640000091523	ENSGT00940000155876	ENSGT00940000154886.a.a	ENSGT00940000156489	ENSGT00940000160420	ENSGT00940000156282.a.a	ENSGT00950000182772.A.a.b.n.b #22	ENSGT00940000154821.b	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000157438	ENSGT00390000015757	ENSGT00940000164013	ENSGT01050000244879.a.a.b	ENSGT00940000156896	ENSGT00940000155397.b	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00390000013443.d	ENSGT00940000155120.lb.b	ENSGT00530000063404.a	ENSGT01050000248397
Dog	MODERN SPECIES		APBA1 (ENSCAFG00845000845)	ENTREP1 (ENSCAFG00845000882)	ENSCAFG00845000920	TJP2 (ENSCAFG00845001062)	FXN (ENSCAFG00845001342)	PIP5K1B (ENSCAFG00845001394)	TMEM252 (ENSCAFG00845001485)	PGM5 (ENSCAFG00845001506)	ENSCAFG00845001539	ZNG1A (ENSCAFG00845001577)	DOCK8 (ENSCAFG00845001647)	KANK1 (ENSCAFG00845001908)	DMRT1 (ENSCAFG00845001983)	DMRT3 (ENSCAFG00845002003)	DMRT2 (ENSCAFG00845002026)	ENSCAFG00845002045 #22	SMARCA2 (ENSCAFG00845002161)	VLDLR (ENSCAFG00845002345)	KCNV2 (ENSCAFG00845002424)	PUM3 (ENSCAFG00845002440)	ENSCAFG00845002474	RFX3 (ENSCAFG00845002562)	ENSCAFG00845002739	GLIS3 (ENSCAFG00845002759)	SLC1A1 (ENSCAFG00845002818)	SPATA6L (ENSCAFG00845002856)	PLPP6 (ENSCAFG00845002916)	CDC37L1 (ENSCAFG00845015553)	ENSCAFG00845015626	ENSCAFG00845015667	JAK2 (ENSCAFG00845015728)
Dingo	MODERN SPECIES	125	FXN (ENSCAFG00020026605)	ENSCAFG00020026606	PIP5K1B (ENSCAFG00020026608)	PABIR1 (ENSCAFG00020026613)	TMEM252 (ENSCAFG00020026616)	PGM5 (ENSCAFG00020026619)	ENSCAFG00020026621	ENSCAFG00020026623	ENSCAFG00020026625	ENSCAFG00020026627	DOCK8 (ENSCAFG00020026637)	KANK1 (ENSCAFG00020026742)	DMRT1 (ENSCAFG00020026750)	DMRT3 (ENSCAFG00020026752)	DMRT2 (ENSCAFG00020026753)	ENSCAFG00020026759 #22	ENSCAFG00020026766	ENSCAFG00020026802	ENSCAFG00020026863	VLDLR (ENSCAFG00020026865)	KCNV2 (ENSCAFG00020026866)	PUM3 (ENSCAFG00020026867)	RFX3 (ENSCAFG00020026868)	ENSCAFG00020026870	GLIS3 (ENSCAFG00020000104)	SLC1A1 (ENSCAFG00020000361)	SPATA6L (ENSCAFG00020000384)	PLPP6 (ENSCAFG00020000503)	CDC37L1 (ENSCAFG00020000516)	ENSCAFG00020000594	ENSCAFG00020000622
Red fox	MODERN SPECIES	61	MMP13 (ENSVVUG00000011996)	ENSVVUG00000012007	DYNC2H1 (ENSVVUG00000012126)	PDGFD (ENSVVUG00000013885)	DDI1 (ENSVVUG00000013892)	ENSVVUG00000013893	ENSVVUG00000013912	CASP12 (ENSVVUG00000013915)	ENSVVUG00000013918	ENSVVUG00000013932	GRIA4 (ENSVVUG00000013946)	ENSVVUG00000013955	MSANTD4 (ENSVVUG00000013957)	KBTBD3 (ENSVVUG00000013959)	AASDHPPT (ENSVVUG00000013961)	ENSVVUG00000013968 #22	ENSVVUG00000013969	GUCY1A2 (ENSVVUG00000013971)	ENSVVUG00000013985	ENSVVUG00000013987	ALKBH8 (ENSVVUG00000013994)	ELMOD1 (ENSVVUG00000014009)	ENSVVUG00000014026	SLC35F2 (ENSVVUG00000014033)	ENSVVUG00000014044	CUL5 (ENSVVUG00000014050)	ENSVVUG00000014072	ACAT1 (ENSVVUG00000014076)	NPAT (ENSVVUG00000014091)	ATM (ENSVVUG00000014332)	CUNH11orf65 (ENSVVUG00000015456)
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.d #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Mustelinae	ANCESTRAL SPECIES	37	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.d #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
American mink	MODERN SPECIES	238				ASPG (ENSNVIG00000013540) #11	TDRD9 (ENSNVIG00000013511) #13	RD3L (ENSNVIG00000013504) #12	ENSNVIG00000013494 #14	PPP1R13B (ENSNVIG00000013457) #15	ZFYVE21 (ENSNVIG00000013427) #16	XRCC3 (ENSNVIG00000013410) #17	KLC1 (ENSNVIG00000013150) #18	COA8 (ENSNVIG00000013115) #20	BAG5 (ENSNVIG00000013106) #19	TRMT61A (ENSNVIG00000013085) #21	ENSNVIG00000013077	CKB (ENSNVIG00000013050) #22	MARK3 (ENSNVIG00000012924) #23	EIF5 (ENSNVIG00000012893) #25	ENSNVIG00000012876	TNFAIP2 (ENSNVIG00000012816) #27	EXOC3L4 (ENSNVIG00000012718) #28	LBHD2 (ENSNVIG00000012707) #29	CDC42BPB (ENSNVIG00000010257) #30	TRAF3 (ENSNVIG00000009988) #32	RCOR1 (ENSNVIG00000009957) #33	ANKRD9 (ENSNVIG00000009948)	TECPR2 (ENSNVIG00000009884) #34	CINP (ENSNVIG00000009847) #35	ENSNVIG00000009823 #36	MOK (ENSNVIG00000009797) #37	WDR20 (ENSNVIG00000009765)
Ferret	MODERN SPECIES	208	ENSMPUG00000002245 #9	ENSMPUG00000002252	KIF26A (ENSMPUG00000002257) #10	ASPG (ENSMPUG00000002283) #11	ENSMPUG00000019159	TDRD9 (ENSMPUG00000002286) #13	RD3L (ENSMPUG00000002293) #12	ATP5MJ (ENSMPUG00000002297) #14	PPP1R13B (ENSMPUG00000002303) #15	ZFYVE21 (ENSMPUG00000002309) #16	XRCC3 (ENSMPUG00000002329) #17	KLC1 (ENSMPUG00000002343) #18	ENSMPUG00000002350 #20	BAG5 (ENSMPUG00000019163) #19	TRMT61A (ENSMPUG00000002358) #21	CKB (ENSMPUG00000002360) #22	MARK3 (ENSMPUG00000002365) #23	EIF5 (ENSMPUG00000002368) #25	ENSMPUG00000002372	ENSMPUG00000019166	TNFAIP2 (ENSMPUG00000002374) #27	EXOC3L4 (ENSMPUG00000002379) #28	CDC42BPB (ENSMPUG00000002385) #30	ENSMPUG00000002603 #31	TRAF3 (ENSMPUG00000002628) #32	ENSMPUG00000002637	RCOR1 (ENSMPUG00000002641) #33	TECPR2 (ENSMPUG00000002682) #34	CINP (ENSMPUG00000002697) #35	ENSMPUG00000002705 #36	MOK (ENSMPUG00000002728) #37
Ursidae	ANCESTRAL SPECIES	10	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT00900000143542	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000168574	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Ursus	ANCESTRAL SPECIES	124	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b #14	ENSGT00390000016760.d #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25
American black bear	MODERN SPECIES	287								PPP1R13B (ENSUAMG00000012113) #15	ZFYVE21 (ENSUAMG00000012107) #16	XRCC3 (ENSUAMG00000012103) #17	KLC1 (ENSUAMG00000012097) #18	COA8 (ENSUAMG00000012095) #20	BAG5 (ENSUAMG00000012094) #19	TRMT61A (ENSUAMG00000012092) #21	ENSUAMG00000012091	CKB (ENSUAMG00000012090) #22	MARK3 (ENSUAMG00000012086) #23
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	5	KIF26A (ENSAMEG00000030034) #10	ASPG (ENSAMEG00000018086) #11	TDRD9 (ENSAMEG00000018095) #13	RD3L (ENSAMEG00000030654) #12	ATP5MJ (ENSAMEG00000027787) #14	PPP1R13B (ENSAMEG00000018115) #15	ZFYVE21 (ENSAMEG00000018126) #16	XRCC3 (ENSAMEG00000018138) #17	KLC1 (ENSAMEG00000018143) #18	ENSAMEG00000026620	ENSAMEG00000029613	COA8 (ENSAMEG00000025587) #20	BAG5 (ENSAMEG00000019908) #19	TRMT61A (ENSAMEG00000018154) #21	ENSAMEG00000026280	CKB (ENSAMEG00000027459) #22	MARK3 (ENSAMEG00000018163) #23	ENSAMEG00000030930	EIF5 (ENSAMEG00000018173) #25	ENSAMEG00000018185	TNFAIP2 (ENSAMEG00000018186) #27	ENSAMEG00000026787	EXOC3L4 (ENSAMEG00000018195) #28	LBHD2 (ENSAMEG00000025365) #29	CDC42BPB (ENSAMEG00000018199) #30	AMN (ENSAMEG00000018206) #31	TRAF3 (ENSAMEG00000018207) #32	RCOR1 (ENSAMEG00000018211) #33	ENSAMEG00000027420	TECPR2 (ENSAMEG00000018214) #34	CINP (ENSAMEG00000018216) #35
Giant Panda	MODERN SPECIES	2036																ENSAMEG00000028757 #22
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.a.a #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000154259.l.q.a.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Cat	MODERN SPECIES	237	ENSFCAG00000040445 #8	CB3H14orf180 (ENSFCAG00000028425) #9	ENSFCAG00000051790	KIF26A (ENSFCAG00000028169) #10	ASPG (ENSFCAG00000024828) #11	RD3L (ENSFCAG00000044473) #12	TDRD9 (ENSFCAG00000013807) #13	ENSFCAG00000045017 #14	PPP1R13B (ENSFCAG00000014601) #15	ZFYVE21 (ENSFCAG00000021907) #16	XRCC3 (ENSFCAG00000022404) #17	KLC1 (ENSFCAG00000014599) #18	COA8 (ENSFCAG00000027939) #20	BAG5 (ENSFCAG00000029879) #19	TRMT61A (ENSFCAG00000030816) #21	CKB (ENSFCAG00000007951) #22	MARK3 (ENSFCAG00000007949) #23	EIF5 (ENSFCAG00000026424) #25	ENSFCAG00000050434	ENSFCAG00000047159	TNFAIP2 (ENSFCAG00000002239) #27	EXOC3L4 (ENSFCAG00000010009) #28	LBHD2 (ENSFCAG00000033577) #29	CDC42BPB (ENSFCAG00000010004) #30	ENSFCAG00000043416 #31	TRAF3 (ENSFCAG00000010003) #32	RCOR1 (ENSFCAG00000010430) #33	ANKRD9 (ENSFCAG00000045318)	TECPR2 (ENSFCAG00000004651) #34	CINP (ENSFCAG00000001765) #35	ZNF839 (ENSFCAG00000023382) #36
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.a.a #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000006113.t	ENSGT00390000016478.i.a #25	ENSGT00940000154259.l.q.a.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.a	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.a.a #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000006113.t	ENSGT00390000016478.i.a #25	ENSGT00940000154259.l.q.a.a	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00950000183010.a.a.a.b.a.a.b.a.b.a	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116
lion	MODERN SPECIES	6	ENSPLOG00000006726 #7	TMEM179 (ENSPLOG00000006708) #8	ENSPLOG00000006691 #9	KIF26A (ENSPLOG00000006651) #10	ASPG (ENSPLOG00000006591) #11	RD3L (ENSPLOG00000006561) #12	TDRD9 (ENSPLOG00000006449) #13	ENSPLOG00000006405 #14	PPP1R13B (ENSPLOG00000006341) #15	ZFYVE21 (ENSPLOG00000006306) #16	XRCC3 (ENSPLOG00000006278) #17	KLC1 (ENSPLOG00000006195) #18	COA8 (ENSPLOG00000006136) #20	BAG5 (ENSPLOG00000006121) #19	TRMT61A (ENSPLOG00000006104) #21	CKB (ENSPLOG00000006084) #22	MARK3 (ENSPLOG00000005746) #23	ENSPLOG00000005629	ENSPLOG00000005614	EIF5 (ENSPLOG00000005586) #25	ENSPLOG00000005488	ENSPLOG00000005470	TNFAIP2 (ENSPLOG00000005453) #27	EXOC3L4 (ENSPLOG00000005398) #28	LBHD2 (ENSPLOG00000005383) #29	CDC42BPB (ENSPLOG00000005343) #30	ENSPLOG00000010859	AMN (ENSPLOG00000010781) #31	TRAF3 (ENSPLOG00000010717) #32	RCOR1 (ENSPLOG00000010640) #33	ANKRD9 (ENSPLOG00000010606)
leopard	MODERN SPECIES	162	ENSPPRG00000010978 #7	TMEM179 (ENSPPRG00000011611) #8	ENSPPRG00000011765 #9	KIF26A (ENSPPRG00000014773) #10	ASPG (ENSPPRG00000017404) #11	RD3L (ENSPPRG00000018965) #12	TDRD9 (ENSPPRG00000021286) #13	ATP5MJ (ENSPPRG00000024632) #14	PPP1R13B (ENSPPRG00000024524) #15	ZFYVE21 (ENSPPRG00000024411) #16	XRCC3 (ENSPPRG00000024187) #17	KLC1 (ENSPPRG00000007813) #18	ENSPPRG00000009346	BAG5 (ENSPPRG00000015369) #19	TRMT61A (ENSPPRG00000009410) #21	CKB (ENSPPRG00000010140) #22	MARK3 (ENSPPRG00000021469) #23	ENSPPRG00000015728	EIF5 (ENSPPRG00000000987) #25	ENSPPRG00000001183
Tiger	MODERN SPECIES	490	ENSPTIG00000013911	ENSPTIG00000014779	ENSPTIG00000015395	SIVA1 (ENSPTIG00000015456)	ADSS1 (ENSPTIG00000015676)	ASPG (ENSPTIG00000016326) #11	TDRD9 (ENSPTIG00000017411) #13	RD3L (ENSPTIG00000019597) #12	ATP5MJ (ENSPTIG00000019687) #14	PPP1R13B (ENSPTIG00000019969) #15	ZFYVE21 (ENSPTIG00000020854) #16	XRCC3 (ENSPTIG00000021183) #17	KLC1 (ENSPTIG00000021796) #18	ENSPTIG00000012187	TRMT61A (ENSPTIG00000012664) #21	CKB (ENSPTIG00000012834) #22	MARK3 (ENSPTIG00000013919) #23	ENSPTIG00000005685	EIF5 (ENSPTIG00000017471) #25	TNFAIP2 (ENSPTIG00000017712) #27	EXOC3L4 (ENSPTIG00000017928) #28	LBHD2 (ENSPTIG00000018933) #29	ENSPTIG00000020371	TRAF3 (ENSPTIG00000020503) #32	RCOR1 (ENSPTIG00000004161) #33	ENSPTIG00000005734 #34	ENSPTIG00000005992 #34	CINP (ENSPTIG00000006788) #35	ENSPTIG00000007428 #36	MOK (ENSPTIG00000008365) #37	ENSPTIG00000009917
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Suina	ANCESTRAL SPECIES	24	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Pig	MODERN SPECIES	162	ENSSSCG00000039825 #9	KIF26A (ENSSSCG00000035093) #10	ASPG (ENSSSCG00000039553) #11	RD3L (ENSSSCG00000060746) #12	TDRD9 (ENSSSCG00000002552) #13	ENSSSCG00000045485 #14	PPP1R13B (ENSSSCG00000002544) #15	ZFYVE21 (ENSSSCG00000040945) #16	XRCC3 (ENSSSCG00000002546) #17	ENSSSCG00000063242	KLC1 (ENSSSCG00000002547) #18	COA8 (ENSSSCG00000054301) #20	BAG5 (ENSSSCG00000037197) #19	TRMT61A (ENSSSCG00000034738) #21	ENSSSCG00000031003	CKB (ENSSSCG00000021220) #22	MARK3 (ENSSSCG00000021669) #23	EIF5 (ENSSSCG00000034709) #25	ENSSSCG00000036820	TNFAIP2 (ENSSSCG00000036612) #27	EXOC3L4 (ENSSSCG00000036871) #28	CDC42BPB (ENSSSCG00000002523) #30	AMN (ENSSSCG00000002524) #31	TRAF3 (ENSSSCG00000002525) #32	RCOR1 (ENSSSCG00000002526) #33	ENSSSCG00000039713	TECPR2 (ENSSSCG00000002528) #34	CINP (ENSSSCG00000002530) #35	ENSSSCG00000002532 #36	MOK (ENSSSCG00000002531) #37	WDR20 (ENSSSCG00000002533)
Chacoan peccary	MODERN SPECIES	880			KIF26A (ENSCWAG00000007238) #10	ASPG (ENSCWAG00000007137) #11	ENSCWAG00000007116	RD3L (ENSCWAG00000007102) #12	TDRD9 (ENSCWAG00000007001) #13	ENSCWAG00000006973 #14	PPP1R13B (ENSCWAG00000006884) #15	ZFYVE21 (ENSCWAG00000006849) #16	XRCC3 (ENSCWAG00000006808) #17	KLC1 (ENSCWAG00000006712) #18	COA8 (ENSCWAG00000006664) #20	BAG5 (ENSCWAG00000006653) #19	TRMT61A (ENSCWAG00000006642) #21	CKB (ENSCWAG00000006618) #22	MARK3 (ENSCWAG00000006380) #23	EIF5 (ENSCWAG00000006314) #25	ENSCWAG00000006307
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Cetacea	ANCESTRAL SPECIES	2	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000154384.h.a	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Dolphin	MODERN SPECIES	2012											XRCC3 (ENSTTRG00000006460) #17	KLC1 (ENSTTRG00000006459) #18	COA8 (ENSTTRG00000006458) #20	BAG5 (ENSTTRG00000006457) #19	TRMT61A (ENSTTRG00000006456) #21	CKB (ENSTTRG00000006455) #22	MARK3 (ENSTTRG00000006452) #23
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01010000228353	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Monodontidae	ANCESTRAL SPECIES	26	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT01010000228353	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000235753	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000163824	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Narwhal	MODERN SPECIES	308	TMEM179 (ENSMMNG00015014610) #8	ENSMMNG00015014589 #9	ENSMMNG00015014577	KIF26A (ENSMMNG00015014549) #10	ASPG (ENSMMNG00015014499) #11	RD3L (ENSMMNG00015014464) #12	TDRD9 (ENSMMNG00015014417) #13	ENSMMNG00015014390 #14	PPP1R13B (ENSMMNG00015014332) #15	ZFYVE21 (ENSMMNG00015014286) #16	XRCC3 (ENSMMNG00015014266) #17	KLC1 (ENSMMNG00015014208) #18	COA8 (ENSMMNG00015014143) #20	BAG5 (ENSMMNG00015014139) #19	TRMT61A (ENSMMNG00015014129) #21	CKB (ENSMMNG00015014110) #22	ENSMMNG00015014099	MARK3 (ENSMMNG00015014017) #23	ENSMMNG00015013949 #25	ENSMMNG00015013933	TNFAIP2 (ENSMMNG00015013920) #27	EXOC3L4 (ENSMMNG00015013889) #28	LBHD2 (ENSMMNG00015013874) #29	CDC42BPB (ENSMMNG00015013841) #30	AMN (ENSMMNG00015013798) #31	TRAF3 (ENSMMNG00015013763) #32	RCOR1 (ENSMMNG00015013705) #33	ANKRD9 (ENSMMNG00015013682)	ENSMMNG00015013666	TECPR2 (ENSMMNG00015013625) #34	CINP (ENSMMNG00015013590) #35
Beluga whale	MODERN SPECIES	24	ENSDLEG00000000309 #7	TMEM179 (ENSDLEG00000000320) #8	ENSDLEG00000000335 #9	ENSDLEG00000000348	KIF26A (ENSDLEG00000000396) #10	ASPG (ENSDLEG00000000515) #11	TDRD9 (ENSDLEG00000000618) #13	RD3L (ENSDLEG00000000672) #12	PPP1R13B (ENSDLEG00000000743) #15	ZFYVE21 (ENSDLEG00000000949) #16	XRCC3 (ENSDLEG00000000989) #17	KLC1 (ENSDLEG00000001054) #18	COA8 (ENSDLEG00000001165) #20	BAG5 (ENSDLEG00000001182) #19	TRMT61A (ENSDLEG00000001196) #21	CKB (ENSDLEG00000001218) #22	MARK3 (ENSDLEG00000001258) #23	EIF5 (ENSDLEG00000001302) #25	ENSDLEG00000001352	TNFAIP2 (ENSDLEG00000001359) #27	EXOC3L4 (ENSDLEG00000001375) #28	CDC42BPB (ENSDLEG00000001399) #30	AMN (ENSDLEG00000001433) #31	TRAF3 (ENSDLEG00000001452) #32	RCOR1 (ENSDLEG00000001485) #33	ANKRD9 (ENSDLEG00000001519)	TECPR2 (ENSDLEG00000001533) #34	ENSDLEG00000001591	CINP (ENSDLEG00000001608) #35	ZNF839 (ENSDLEG00000001625) #36	MOK (ENSDLEG00000001645) #37
Vaquita	MODERN SPECIES	11	ENSPSNG00000015303	KIF26A (ENSPSNG00000014965) #10	ASPG (ENSPSNG00000014407) #11	RD3L (ENSPSNG00000014337) #12	TDRD9 (ENSPSNG00000013566) #13	ENSPSNG00000013455 #14	PPP1R13B (ENSPSNG00000013178) #15	ENSPSNG00000013100 #16	XRCC3 (ENSPSNG00000013033) #17	KLC1 (ENSPSNG00000012826) #18	ENSPSNG00000012724	COA8 (ENSPSNG00000012697) #20	BAG5 (ENSPSNG00000012676) #19	TRMT61A (ENSPSNG00000012637) #21	ENSPSNG00000012596	CKB (ENSPSNG00000012548) #22	MARK3 (ENSPSNG00000012281) #23	ENSPSNG00000012168 #25	ENSPSNG00000012141	TNFAIP2 (ENSPSNG00000012073) #27	EXOC3L4 (ENSPSNG00000011928) #28	LBHD2 (ENSPSNG00000011857) #29	CDC42BPB (ENSPSNG00000011659) #30	AMN (ENSPSNG00000011318) #31	TRAF3 (ENSPSNG00000011207) #32	RCOR1 (ENSPSNG00000010958) #33	ANKRD9 (ENSPSNG00000010929)	TECPR2 (ENSPSNG00000010841) #34	CINP (ENSPSNG00000010761) #35	ZNF839 (ENSPSNG00000010719) #36	MOK (ENSPSNG00000010592) #37
Sperm whale	MODERN SPECIES	2	ENSPCTG00005006624 #7	TMEM179 (ENSPCTG00005006558) #8	C11H14orf180 (ENSPCTG00005006532) #9	KIF26A (ENSPCTG00005006474) #10	ASPG (ENSPCTG00005006345) #11	RD3L (ENSPCTG00005006295) #12	TDRD9 (ENSPCTG00005006109) #13	ATP5MPL (ENSPCTG00005006071) #14	PPP1R13B (ENSPCTG00005006003) #15	ZFYVE21 (ENSPCTG00005005897) #16	XRCC3 (ENSPCTG00005005844) #17	KLC1 (ENSPCTG00005005646) #18	COA8 (ENSPCTG00005005582) #20	BAG5 (ENSPCTG00005005570) #19	TRMT61A (ENSPCTG00005005546) #21	CKB (ENSPCTG00005005518) #22	MARK3 (ENSPCTG00005005307) #23	EIF5 (ENSPCTG00005005244) #25	TNFAIP2 (ENSPCTG00005005189) #27	EXOC3L4 (ENSPCTG00005005116) #28	CDC42BPB (ENSPCTG00005004748) #30	AMN (ENSPCTG00005004683) #31	TRAF3 (ENSPCTG00005004489) #32	RCOR1 (ENSPCTG00005004435) #33	ANKRD9 (ENSPCTG00005004420)	ENSPCTG00005004397	TECPR2 (ENSPCTG00005004290) #34	CINP (ENSPCTG00005004231) #35	ENSPCTG00005004207	DYNC1H1 (ENSPCTG00005004117)	ENSPCTG00005004094 #37
Blue whale	MODERN SPECIES	11	ENSBMSG00010011497 #9	ENSBMSG00010011486	KIF26A (ENSBMSG00010011458) #10	ASPG (ENSBMSG00010011404) #11	ENSBMSG00010011374	RD3L (ENSBMSG00010011364) #12	TDRD9 (ENSBMSG00010011272) #13	PPP1R13B (ENSBMSG00010011198) #15	ZFYVE21 (ENSBMSG00010011171) #16	XRCC3 (ENSBMSG00010011089) #17	KLC1 (ENSBMSG00010010987) #18	COA8 (ENSBMSG00010010944) #20	BAG5 (ENSBMSG00010010931) #19	TRMT61A (ENSBMSG00010010915) #21	ENSBMSG00010010903	CKB (ENSBMSG00010010891) #22	MARK3 (ENSBMSG00010010141) #23	ENSBMSG00010010060	ENSBMSG00010010040 #25	ENSBMSG00010010035	TNFAIP2 (ENSBMSG00010010020) #27	EXOC3L4 (ENSBMSG00010009998) #28	ENSBMSG00010009989 #29	CDC42BPB (ENSBMSG00010008073) #30	AMN (ENSBMSG00010007702) #31	TRAF3 (ENSBMSG00010007683) #32	RCOR1 (ENSBMSG00010007663) #33	ANKRD9 (ENSBMSG00010007653)	ENSBMSG00010007643	TECPR2 (ENSBMSG00010007624) #34	CINP (ENSBMSG00010007610) #35
Pecora	ANCESTRAL SPECIES	18	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Percora_a	ANCESTRAL SPECIES	20	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Bovidae	ANCESTRAL SPECIES	20	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Caprinae	ANCESTRAL SPECIES	36	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.b.a #14	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582.d #37
Goat	MODERN SPECIES	13	BTBD6 (ENSCHIG00000012041)	ENSCHIG00000013979 #7	TMEM179 (ENSCHIG00000018701) #8	ENSCHIG00000026025 #9	ASPG (ENSCHIG00000025636) #11	RD3L (ENSCHIG00000025061) #12	TDRD9 (ENSCHIG00000011541) #13	ENSCHIG00000015712 #14	PPP1R13B (ENSCHIG00000018367) #15	ZFYVE21 (ENSCHIG00000012789) #16	XRCC3 (ENSCHIG00000021019) #17	KLC1 (ENSCHIG00000017179) #18	COA8 (ENSCHIG00000024142) #20	BAG5 (ENSCHIG00000011895) #19	TRMT61A (ENSCHIG00000021168) #21	CKB (ENSCHIG00000017850) #22	MARK3 (ENSCHIG00000018506) #23	EIF5 (ENSCHIG00000021283) #25	ENSCHIG00000011000	ENSCHIG00000009953	ENSCHIG00000006615 #27	ENSCHIG00000015133 #27	EXOC3L4 (ENSCHIG00000012030) #28	LBHD2 (ENSCHIG00000016749) #29	CDC42BPB (ENSCHIG00000025348) #30	AMN (ENSCHIG00000008517) #31	TRAF3 (ENSCHIG00000026463) #32	RCOR1 (ENSCHIG00000020773) #33	ANKRD9 (ENSCHIG00000024878)	TECPR2 (ENSCHIG00000015446) #34	CINP (ENSCHIG00000021794) #35
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020019462 #7	ENSOARG00020019411 #7	TMEM179 (ENSOARG00020019369) #8	KIF26A (ENSOARG00020018926) #10	ASPG (ENSOARG00020018531) #11	RD3L (ENSOARG00020018479) #12	TDRD9 (ENSOARG00020017845) #13	ENSOARG00020017719 #14	PPP1R13B (ENSOARG00020017481) #15	ZFYVE21 (ENSOARG00020017435) #16	ENSOARG00020017370 #17	KLC1 (ENSOARG00020016907) #18	COA8 (ENSOARG00020016820) #20	BAG5 (ENSOARG00020016804) #19	TRMT61A (ENSOARG00020016758) #21	CKB (ENSOARG00020016713) #22	MARK3 (ENSOARG00020015010) #23	EIF5 (ENSOARG00020014840) #25	ENSOARG00020014771	ENSOARG00020014751	TNFAIP2 (ENSOARG00020014380) #27	LBHD2 (ENSOARG00020014332) #29	CDC42BPB (ENSOARG00020014102) #30	AMN (ENSOARG00020014007) #31	TRAF3 (ENSOARG00020013868) #32	RCOR1 (ENSOARG00020013701) #33	ANKRD9 (ENSOARG00020013669)	TECPR2 (ENSOARG00020013345) #34	CINP (ENSOARG00020013201) #35	MOK (ENSOARG00020012890) #37	WDR20 (ENSOARG00020012746)
Bovinae	ANCESTRAL SPECIES	19	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Bos	ANCESTRAL SPECIES	18	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a.m.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
Bos_b	ANCESTRAL SPECIES	18	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00950000185142	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a.m.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784.g #35
Hybrid Bos Indicus	MODERN SPECIES	13	TMEM179 (ENSBIXG00005012856) #8	ENSBIXG00005012885	KIF26A (ENSBIXG00005012948) #10	ASPG (ENSBIXG00005013016) #11	RD3L (ENSBIXG00005013046) #12	TDRD9 (ENSBIXG00005013101) #13	ENSBIXG00005013147 #14	PPP1R13B (ENSBIXG00005013207) #15	ZFYVE21 (ENSBIXG00005013238) #16	ENSBIXG00005005839 #17	KLC1 (ENSBIXG00005013345) #18	BAG5 (ENSBIXG00005013374) #19	COA8 (ENSBIXG00005013417) #20	TRMT61A (ENSBIXG00005013436) #21	ENSBIXG00005013451	CKB (ENSBIXG00005013465) #22	MARK3 (ENSBIXG00005013647) #23	ENSBIXG00005013727	EIF5 (ENSBIXG00005007534) #25	TNFAIP2 (ENSBIXG00005013949) #27	EXOC3L4 (ENSBIXG00005014043) #28	LBHD2 (ENSBIXG00005014064) #29	CDC42BPB (ENSBIXG00005014455) #30	AMN (ENSBIXG00005014541) #31	TRAF3 (ENSBIXG00005014683) #32	RCOR1 (ENSBIXG00005002063) #33	ANKRD9 (ENSBIXG00005014737)	TECPR2 (ENSBIXG00005014758) #34	ENSBIXG00005002093 #35	ENSBIXG00005014886 #36	MOK (ENSBIXG00005002183) #37
Cow	MODERN SPECIES	13	ENSBTAG00000054250 #7	TMEM179 (ENSBTAG00000006673) #8	C21H14orf180 (ENSBTAG00000022775) #9	KIF26A (ENSBTAG00000021904) #10	ASPG (ENSBTAG00000017194) #11	RD3L (ENSBTAG00000046401) #12	TDRD9 (ENSBTAG00000020402) #13	ATP5MJ (ENSBTAG00000026886) #14	PPP1R13B (ENSBTAG00000003559) #15	ZFYVE21 (ENSBTAG00000003556) #16	XRCC3 (ENSBTAG00000009966) #17	KLC1 (ENSBTAG00000017299) #18	COA8 (ENSBTAG00000021199) #20	TRMT61A (ENSBTAG00000031327) #21	ENSBTAG00000050863	CKB (ENSBTAG00000035998) #22	MARK3 (ENSBTAG00000013410) #23	ENSBTAG00000052838	EIF5 (ENSBTAG00000016282) #25	ENSBTAG00000048602	ENSBTAG00000047319	TNFAIP2 (ENSBTAG00000035995) #27	ENSBTAG00000049333 #27	EXOC3L4 (ENSBTAG00000026893) #28	CDC42BPB (ENSBTAG00000016456) #30	AMN (ENSBTAG00000015750) #31	TRAF3 (ENSBTAG00000013475) #32	ENSBTAG00000046633	RCOR1 (ENSBTAG00000002336) #33	ANKRD9 (ENSBTAG00000010882)	TECPR2 (ENSBTAG00000012143) #34
Bos_a	ANCESTRAL SPECIES	10	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000235753	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a.m.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000153096.b.c.b.b.a.a.b.a.b	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00940000159582 #37
Wild yak	MODERN SPECIES	1592									ENSBMUG00000021691 #17	ENSBMUG00000021631 #17	KLC1 (ENSBMUG00000021318) #18	COA8 (ENSBMUG00000020927) #20	BAG5 (ENSBMUG00000020916) #19	TRMT61A (ENSBMUG00000020902) #21	ENSBMUG00000020887	CKB (ENSBMUG00000020883) #22	MARK3 (ENSBMUG00000020761) #23	EIF5 (ENSBMUG00000020600) #25	ENSBMUG00000020589
Domestic yak	MODERN SPECIES	8	ENSBGRG00000005143 #8	ENSBGRG00000005088 #8	ENSBGRG00000005062 #9	KIF26A (ENSBGRG00000004995) #10	ASPG (ENSBGRG00000004910) #11	RD3L (ENSBGRG00000004882) #12	TDRD9 (ENSBGRG00000004595) #13	ENSBGRG00000004548 #14	ZFYVE21 (ENSBGRG00000004348) #16	ENSBGRG00000004194 #17	KLC1 (ENSBGRG00000003931) #18	COA8 (ENSBGRG00000003846) #20	BAG5 (ENSBGRG00000003800) #19	TRMT61A (ENSBGRG00000024382) #21	ENSBGRG00000024357	CKB (ENSBGRG00000024311) #22	MARK3 (ENSBGRG00000023429) #23	EIF5 (ENSBGRG00000023240) #25	ENSBGRG00000023228	ENSBGRG00000023041 #27	ENSBGRG00000022967 #27	EXOC3L4 (ENSBGRG00000022807) #28	LBHD2 (ENSBGRG00000022778) #29	AMN (ENSBGRG00000017746) #31	TRAF3 (ENSBGRG00000017554) #32	ENSBGRG00000017508	ENSBGRG00000017492	RCOR1 (ENSBGRG00000017037) #33	ANKRD9 (ENSBGRG00000016991)	TECPR2 (ENSBGRG00000016292) #34	CINP (ENSBGRG00000016013) #35
American bison	MODERN SPECIES	3216				ASPG (ENSBBBG00000011673) #11	TDRD9 (ENSBBBG00000011627) #13	RD3L (ENSBBBG00000011601) #12	ENSBBBG00000025488 #14	PPP1R13B (ENSBBBG00000025430) #15	ENSBBBG00000025291	KLC1 (ENSBBBG00000025259) #18	ENSBBBG00000008050 #17	ENSBBBG00000024861	ENSBBBG00000024856 #20	BAG5 (ENSBBBG00000006546) #19	TRMT61A (ENSBBBG00000006541) #21	CKB (ENSBBBG00000024829) #22	ENSBBBG00000006806	MARK3 (ENSBBBG00000007721) #23	EIF5 (ENSBBBG00000024526) #25	ENSBBBG00000024496	ENSBBBG00000006381	LBHD2 (ENSBBBG00000024466) #29	CDC42BPB (ENSBBBG00000024454) #30	TRAF3 (ENSBBBG00000008712) #32	ENSBBBG00000024266	RCOR1 (ENSBBBG00000000286) #33	ENSBBBG00000024185	TECPR2 (ENSBBBG00000006291) #34	CINP (ENSBBBG00000024144) #35	ENSBBBG00000024008	WDR20 (ENSBBBG00000023985)
Siberian musk deer	MODERN SPECIES	217	ENSMMSG00000011279 #7	TMEM179 (ENSMMSG00000011218) #8	ENSMMSG00000011200 #9	KIF26A (ENSMMSG00000011156) #10	ENSMMSG00000010971	TDRD9 (ENSMMSG00000010943) #13	RD3L (ENSMMSG00000010920) #12	ATP5MJ (ENSMMSG00000010881) #14	PPP1R13B (ENSMMSG00000010805) #15	ZFYVE21 (ENSMMSG00000010743) #16	XRCC3 (ENSMMSG00000010698) #17	KLC1 (ENSMMSG00000010580) #18	COA8 (ENSMMSG00000010481) #20	BAG5 (ENSMMSG00000010459) #19	TRMT61A (ENSMMSG00000010423) #21	CKB (ENSMMSG00000010378) #22	MARK3 (ENSMMSG00000010148) #23	ENSMMSG00000010055 #25	ENSMMSG00000010036	ENSMMSG00000010019	TNFAIP2 (ENSMMSG00000009966) #27	EXOC3L4 (ENSMMSG00000009913) #28	LBHD2 (ENSMMSG00000009887) #29	CDC42BPB (ENSMMSG00000009763) #30	AMN (ENSMMSG00000009731) #31	TRAF3 (ENSMMSG00000009622) #32	RCOR1 (ENSMMSG00000009566) #33	ANKRD9 (ENSMMSG00000009547)	ENSMMSG00000009523 #34
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	4	ENSCHYG00000006388 #8	ENSCHYG00000006381 #9	KIF26A (ENSCHYG00000006246) #10	ASPG (ENSCHYG00000006023) #11	TDRD9 (ENSCHYG00000005960) #13	RD3L (ENSCHYG00000005926) #12	ATP5MJ (ENSCHYG00000005881) #14	PPP1R13B (ENSCHYG00000005719) #15	ZFYVE21 (ENSCHYG00000005622) #16	XRCC3 (ENSCHYG00000005585) #17	KLC1 (ENSCHYG00000005243) #18	ENSCHYG00000005153 #20	BAG5 (ENSCHYG00000005133) #19	TRMT61A (ENSCHYG00000005120) #21	ENSCHYG00000005109	ENSCHYG00000005021 #22	MARK3 (ENSCHYG00000004852) #23	EIF5 (ENSCHYG00000004810) #25	ENSCHYG00000004803	ENSCHYG00000004798	ENSCHYG00000004788	ENSCHYG00000004783	TNFAIP2 (ENSCHYG00000004766) #27	EXOC3L4 (ENSCHYG00000004724) #28	LBHD2 (ENSCHYG00000004703) #29	CDC42BPB (ENSCHYG00000004562) #30	ENSCHYG00000004509 #31	TRAF3 (ENSCHYG00000016275) #32	RCOR1 (ENSCHYG00000016056) #33	ANKRD9 (ENSCHYG00000015938)	ENSCHYG00000015918
Yarkand deer	MODERN SPECIES	14	GNPTAB (ENSCHYG00000026007)	SYCP3 (ENSCHYG00000025959)	CHPT1 (ENSCHYG00000025883)	MYBPC1 (ENSCHYG00000024823)	SPIC (ENSCHYG00000024724)	ARL1 (ENSCHYG00000024652)	UTP20 (ENSCHYG00000024333)	SLC5A8 (ENSCHYG00000024213)	ANO4 (ENSCHYG00000023758)	GAS2L3 (ENSCHYG00000023599)	NR1H4 (ENSCHYG00000023219)	SLC17A8 (ENSCHYG00000023010)	SCYL2 (ENSCHYG00000022642)	ACTR6 (ENSCHYG00000022511)	BLTP3B (ENSCHYG00000022150)	ENSCHYG00000022096 #22	ANKS1B (ENSCHYG00000020900)	APAF1 (ENSCHYG00000019906)	IKBIP (ENSCHYG00000019783)	ENSCHYG00000019744	ENSCHYG00000019480	ENSCHYG00000019270	ENSCHYG00000019199	NEDD1 (ENSCHYG00000018895)	CFAP54 (ENSCHYG00000018187)	ENSCHYG00000018145	CDK17 (ENSCHYG00000017640)	ELK3 (ENSCHYG00000017527)	LTA4H (ENSCHYG00000017296)	HAL (ENSCHYG00000016993)	AMDHD1 (ENSCHYG00000016862)
Camelidae	ANCESTRAL SPECIES	8	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.c.a.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25	ENSGT00940000164852	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00610000087423 #29	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Arabian camel	MODERN SPECIES	32	ENSCDRG00005000086 #7	TMEM179 (ENSCDRG00005000074) #8	ENSCDRG00005000064 #9	KIF26A (ENSCDRG00005008650) #10	ASPG (ENSCDRG00005008457) #11	RD3L (ENSCDRG00005008419) #12	TDRD9 (ENSCDRG00005007986) #13	ENSCDRG00005007908 #14	PPP1R13B (ENSCDRG00005007666) #15	ZFYVE21 (ENSCDRG00005007593) #16	XRCC3 (ENSCDRG00005007547) #17	KLC1 (ENSCDRG00005007246) #18	COA8 (ENSCDRG00005007168) #20	BAG5 (ENSCDRG00005007138) #19	TRMT61A (ENSCDRG00005007111) #21	CKB (ENSCDRG00005007042) #22	MARK3 (ENSCDRG00005006645) #23	EIF5 (ENSCDRG00005006567) #25	ENSCDRG00005006551	TNFAIP2 (ENSCDRG00005006503) #27	EXOC3L4 (ENSCDRG00005006387) #28	LBHD2 (ENSCDRG00005006329) #29	CDC42BPB (ENSCDRG00005006234) #30	AMN (ENSCDRG00005006162) #31	TRAF3 (ENSCDRG00005006052) #32	RCOR1 (ENSCDRG00005005960) #33	TECPR2 (ENSCDRG00005005800) #34	CINP (ENSCDRG00005005759) #35	ZNF839 (ENSCDRG00005005718) #36	MOK (ENSCDRG00005005668) #37	WDR20 (ENSCDRG00005005620)
Atlantogenata	ANCESTRAL SPECIES	102	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25
Afrotheria	ANCESTRAL SPECIES	129	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25
Afrotheria_a	ANCESTRAL SPECIES	132	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00390000001214 #9	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478.i.a #25
Elephant	MODERN SPECIES	602	AKT1 (ENSLAFG00000027344)	SIVA1 (ENSLAFG00000014514)	ADSS1 (ENSLAFG00000013331)	ENSLAFG00000027091 #7	TMEM179 (ENSLAFG00000006445) #8	ENSLAFG00000026667 #9	KIF26A (ENSLAFG00000022951) #10	ASPG (ENSLAFG00000031455) #11	TDRD9 (ENSLAFG00000007580) #13	PPP1R13B (ENSLAFG00000012542) #15	ZFYVE21 (ENSLAFG00000012540) #16	XRCC3 (ENSLAFG00000010642) #17	KLC1 (ENSLAFG00000002499) #18	BAG5 (ENSLAFG00000023130) #19	TRMT61A (ENSLAFG00000014714) #21	CKB (ENSLAFG00000031612) #22	MARK3 (ENSLAFG00000005376) #23	ENSLAFG00000017777 #25	ATG2B (ENSLAFG00000016704)	GSKIP (ENSLAFG00000014641)	AK7 (ENSLAFG00000014643)	PAPOLA (ENSLAFG00000000946)	VRK1 (ENSLAFG00000008883)	BCL11B (ENSLAFG00000009254)	SETD3 (ENSLAFG00000018555)	CCNK (ENSLAFG00000027530)	HHIPL1 (ENSLAFG00000013235)	CYP46A1 (ENSLAFG00000000543)	EML1 (ENSLAFG00000004885)	EVL (ENSLAFG00000003748)	DEGS2 (ENSLAFG00000026042)
Tenrec	MODERN SPECIES	7056															TRMT61A (ENSETEG00000008670) #21	CKB (ENSETEG00000008667) #22	MARK3 (ENSETEG00000008658) #23
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b
Marsupialia_b	ANCESTRAL SPECIES	21	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b
Diprotodontia	ANCESTRAL SPECIES	34	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760 #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00520000057711
Diprotodontia_a	ANCESTRAL SPECIES	33	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00390000016760.b #14	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784.e #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00520000057711
Common wonbat	MODERN SPECIES	455	ENSVURG00010005343 #7	TMEM179 (ENSVURG00010005332) #8	KIF26A (ENSVURG00010005300) #10	ASPG (ENSVURG00010005231) #11	RD3L (ENSVURG00010005206) #12	TDRD9 (ENSVURG00010005150) #13	ENSVURG00010005115 #14	PPP1R13B (ENSVURG00010005071) #15	ZFYVE21 (ENSVURG00010005038) #16	XRCC3 (ENSVURG00010005008) #17	KLC1 (ENSVURG00010004931) #18	ENSVURG00010004907	BAG5 (ENSVURG00010004901) #19	TRMT61A (ENSVURG00010004892) #21	ENSVURG00010004878	CKB (ENSVURG00010004865) #22	MARK3 (ENSVURG00010004765) #23	EIF5 (ENSVURG00010004689) #25	ENSVURG00010004651 #27	ENSVURG00010004614 #28	ENSVURG00010004567	CDC42BPB (ENSVURG00010004507) #30	TRAF3 (ENSVURG00010004468) #32	RCOR1 (ENSVURG00010004417) #33	ANKRD9 (ENSVURG00010004403)	TECPR2 (ENSVURG00010004386) #34	ENSVURG00010004374 #35	ENSVURG00010004363 #36	MOK (ENSVURG00010004348) #37	WDR20 (ENSVURG00010004298)	ENSVURG00010004274
koala	MODERN SPECIES	213				KIF26A (ENSPCIG00000004452) #10	ASPG (ENSPCIG00000020604) #11	TDRD9 (ENSPCIG00000016427) #13	RD3L (ENSPCIG00000026951) #12	ATP5MJ (ENSPCIG00000018696) #14	PPP1R13B (ENSPCIG00000015919) #15	ZFYVE21 (ENSPCIG00000015993) #16	XRCC3 (ENSPCIG00000015995) #17	KLC1 (ENSPCIG00000016002) #18	COA8 (ENSPCIG00000016006) #20	BAG5 (ENSPCIG00000016008) #19	TRMT61A (ENSPCIG00000011257) #21	CKB (ENSPCIG00000011263) #22	MARK3 (ENSPCIG00000011285) #23	ENSPCIG00000011312	EIF5 (ENSPCIG00000011319) #25	ENSPCIG00000011331 #27	ENSPCIG00000011346 #28	CDC42BPB (ENSPCIG00000011362) #30	TRAF3 (ENSPCIG00000026593) #32	RCOR1 (ENSPCIG00000011375) #33	ENSPCIG00000028110	ANKRD9 (ENSPCIG00000015051)	TECPR2 (ENSPCIG00000015052) #34	ENSPCIG00000015076 #35	ENSPCIG00000015079 #36	MOK (ENSPCIG00000025176) #37	ENSPCIG00000025178
Wallaby	DUPLICATION
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	187																ENSMEUG00000002979 #22
Wallaby	MODERN SPECIES	13892																ENSMEUG00000001290 #22
Wallaby	MODERN SPECIES	12845														ENSMEUG00000005849	ENSMEUG00000005854	ENSMEUG00000005858 #22
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	1	TMEM179 (ENSSHAG00000030269) #8	ENSSHAG00000027215	ENSSHAG00000026217	KIF26A (ENSSHAG00000011581) #10	ASPG (ENSSHAG00000012851) #11	TDRD9 (ENSSHAG00000013742) #13	RD3L (ENSSHAG00000014495) #12	ATP5MJ (ENSSHAG00000014580) #14	PPP1R13B (ENSSHAG00000015159) #15	ZFYVE21 (ENSSHAG00000015314) #16	XRCC3 (ENSSHAG00000015422) #17	KLC1 (ENSSHAG00000015545) #18	COA8 (ENSSHAG00000028665) #20	BAG5 (ENSSHAG00000028616) #19	TRMT61A (ENSSHAG00000029389) #21	ENSSHAG00000016459 #22	MARK3 (ENSSHAG00000016567) #23	EIF5 (ENSSHAG00000017066) #25	ENSSHAG00000001873 #27	ENSSHAG00000029726 #27	ENSSHAG00000001823 #28	ENSSHAG00000028259	ENSSHAG00000022704	CDC42BPB (ENSSHAG00000006579) #30	ENSSHAG00000008188 #31	TRAF3 (ENSSHAG00000009189) #32	RCOR1 (ENSSHAG00000005101) #33	ANKRD9 (ENSSHAG00000028717)	TECPR2 (ENSSHAG00000006435) #34	CINP (ENSSHAG00000023361) #35	ENSSHAG00000007834 #36
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000010697	KDR (ENSSHAG00000008488)	SRD5A3 (ENSSHAG00000006811)	TMEM165 (ENSSHAG00000006313)	CLOCK (ENSSHAG00000005555)	ENSSHAG00000028318	EXOC1L (ENSSHAG00000022445)	EXOC1 (ENSSHAG00000009279)	CEP135 (ENSSHAG00000008361)	CRACD (ENSSHAG00000026554)	AASDH (ENSSHAG00000004611)	ENSSHAG00000002861	ENSSHAG00000001748	SRP72 (ENSSHAG00000028812)	ENSSHAG00000020703	ENSSHAG00000003724 #22	ENSSHAG00000000263	ENSSHAG00000029827	ENSSHAG00000028479	NOA1 (ENSSHAG00000022053)	POLR2B (ENSSHAG00000016080)	IGFBP7 (ENSSHAG00000026079)	ADGRL3 (ENSSHAG00000010680)	TECRL (ENSSHAG00000029045)	EPHA5 (ENSSHAG00000017029)	ENSSHAG00000009376	STAP1 (ENSSHAG00000008776)	UBA6 (ENSSHAG00000008202)	GNRHR (ENSSHAG00000007827)	ENSSHAG00000006941	TMPRSS11D (ENSSHAG00000005958)
Opossum	MODERN SPECIES		TMEM179 (ENSMODG00000013642) #8	ENSMODG00000013636 #10	ASPG (ENSMODG00000013615) #11	TDRD9 (ENSMODG00000013609) #13	RD3L (ENSMODG00000028050) #12	ENSMODG00000048373	ATP5MJ (ENSMODG00000025740) #14	PPP1R13B (ENSMODG00000013546) #15	ZFYVE21 (ENSMODG00000013535) #16	XRCC3 (ENSMODG00000013528) #17	KLC1 (ENSMODG00000013523) #18	ENSMODG00000021463	COA8 (ENSMODG00000050823) #20	BAG5 (ENSMODG00000023834) #19	TRMT61A (ENSMODG00000013507) #21	CKB (ENSMODG00000013504) #22	MARK3 (ENSMODG00000013489) #23	EIF5 (ENSMODG00000013424) #25	ENSMODG00000041052 #27	ENSMODG00000013430 #27	ENSMODG00000013417 #28	ENSMODG00000046265	ENSMODG00000041115 ##30	CDC42BPB (ENSMODG00000013407) #30	ENSMODG00000049771	ENSMODG00000013361 #31	TRAF3 (ENSMODG00000013357) #32	ENSMODG00000028617	RCOR1 (ENSMODG00000013350) #33	ANKRD9 (ENSMODG00000013335)	TECPR2 (ENSMODG00000013332) #34
Platypus	MODERN SPECIES		AKT1 (ENSOANG00000031179)	ADSS1 (ENSOANG00000005973)	INF2 (ENSOANG00000001085) #7	ENSOANG00000011958 #8	KIF26A (ENSOANG00000042686) #10	RD3L (ENSOANG00000000795) #12	TDRD9 (ENSOANG00000000797) #13	ATP5MPL (ENSOANG00000043647) #14	PPP1R13B (ENSOANG00000000793) #15	ENSOANG00000049279 #16	XRCC3 (ENSOANG00000000792) #17	BAG5 (ENSOANG00000000627) #19	KLC1 (ENSOANG00000000786) #18	TRMT61A (ENSOANG00000000785) #21	MARK3 (ENSOANG00000000773) #23	ENSOANG00000042928 #22	EIF5 (ENSOANG00000000767) #25	ENSOANG00000009546 #27	CDC42BPB (ENSOANG00000014636) #30	ENSOANG00000014635 #31	TRAF3 (ENSOANG00000014633) #32	RCOR1 (ENSOANG00000013917) #33	ANKRD9 (ENSOANG00000005741)	TECPR2 (ENSOANG00000005740) #34	MOK (ENSOANG00000005736) #37	ENSOANG00000005735	ENSOANG00000044415	HSP90AA1 (ENSOANG00000005734)	DYNC1H1 (ENSOANG00000005733)	PPP2R5C (ENSOANG00000005732)	DIO3 (ENSOANG00000046280)
Sauria	ANCESTRAL SPECIES	3	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Lepidosauria	ANCESTRAL SPECIES	27			ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
tuatara	MODERN SPECIES	1558					KIF26A (ENSSPUG00000004827) #10	ASPG (ENSSPUG00000004653) #11	TDRD9 (ENSSPUG00000004504) #13	RD3L (ENSSPUG00000004476) #12	PPP1R13B (ENSSPUG00000004468) #15	ZFYVE21 (ENSSPUG00000004453) #16	XRCC3 (ENSSPUG00000004439) #17	KLC1 (ENSSPUG00000004341) #18	COA8 (ENSSPUG00000004317) #20	BAG5 (ENSSPUG00000004310) #19	TRMT61A (ENSSPUG00000004293) #21	CKB (ENSSPUG00000004247) #22	MARK3 (ENSSPUG00000004212) #23	EIF5 (ENSSPUG00000004139) #25	ENSSPUG00000004130
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00390000001610.f #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01040000244769	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00390000001610.f #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01040000244769	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	35	ENSSMRG00000001761 #7	TMEM179 (ENSSMRG00000001764) #8	KIF26A (ENSSMRG00000001803) #10	ENSSMRG00000001839 #11	ENSSMRG00000001864 #11	TDRD9 (ENSSMRG00000002065) #13	RD3L (ENSSMRG00000002085) #12	PPP1R13B (ENSSMRG00000002090) #15	ZFYVE21 (ENSSMRG00000002143) #16	XRCC3 (ENSSMRG00000002153) #17	KLC1 (ENSSMRG00000002165) #18	ENSSMRG00000002203	COA8 (ENSSMRG00000002206) #20	BAG5 (ENSSMRG00000002208) #19	TRMT61A (ENSSMRG00000002217) #21	ENSSMRG00000002221 #22	MARK3 (ENSSMRG00000002223) #23	EIF5 (ENSSMRG00000002253) #25	TNFAIP2 (ENSSMRG00000002264) #27	ENSSMRG00000002295 #28	ENSSMRG00000002299	ENSSMRG00000002316	CDC42BPB (ENSSMRG00000002349) #30	AMN (ENSSMRG00000002387) #31	TRAF3 (ENSSMRG00000002419) #32	RCOR1 (ENSSMRG00000002465) #33	ANKRD9 (ENSSMRG00000002516)	TECPR2 (ENSSMRG00000002541) #34	ENSSMRG00000002550	CINP (ENSSMRG00000002552) #35	MOK (ENSSMRG00000002561) #37
Argentine black and white tegu	MODERN SPECIES	12	PRAF2 (ENSSMRG00000019240)	CCDC120 (ENSSMRG00000019239)	TFE3 (ENSSMRG00000019237)	GRIPAP1 (ENSSMRG00000019236)	ENSSMRG00000019235	OTUD5 (ENSSMRG00000019233)	PIM2 (ENSSMRG00000019232)	SLC35A2 (ENSSMRG00000019231)	PQBP1 (ENSSMRG00000019230)	TIMM17B (ENSSMRG00000019229)	ENSSMRG00000019228	CDK20 (ENSSMRG00000019227)	ENSSMRG00000019226	HDAC6 (ENSSMRG00000019223)	ENSSMRG00000019221	ENSSMRG00000019220 #22	ENSSMRG00000019219	ENSSMRG00000019211	PFKFB1 (ENSSMRG00000019210)	APEX2 (ENSSMRG00000019209)	ALAS2 (ENSSMRG00000019208)	PRICKLE3 (ENSSMRG00000019206)	ENSSMRG00000019205	ENSSMRG00000019204	ITIH6 (ENSSMRG00000019135)	PHF8 (ENSSMRG00000019134)	FAM120C (ENSSMRG00000019133)	SSR4 (ENSSMRG00000019131)	WNK3 (ENSSMRG00000019129)	TSR2 (ENSSMRG00000019128)	FGD1 (ENSSMRG00000019064)
Common wall lizard	MODERN SPECIES		ENSPMRG00000005608	INF2 (ENSPMRG00000005621) #7	TMEM179 (ENSPMRG00000005643) #8	ASPG (ENSPMRG00000005655) #11	TDRD9 (ENSPMRG00000005698) #13	RD3L (ENSPMRG00000005767) #12	ENSPMRG00000005774	PPP1R13B (ENSPMRG00000005835) #15	ZFYVE21 (ENSPMRG00000006010) #16	XRCC3 (ENSPMRG00000006030) #17	KLC1 (ENSPMRG00000000046) #18	COA8 (ENSPMRG00000000047) #20	BAG5 (ENSPMRG00000000048) #19	ENSPMRG00000000049	TRMT61A (ENSPMRG00000000050) #21	CKB (ENSPMRG00000000051) #22	ENSPMRG00000000052	MARK3 (ENSPMRG00000000055) #23	EIF5 (ENSPMRG00000000059) #25	TNFAIP2 (ENSPMRG00000000063) #27	ENSPMRG00000000065	CDC42BPB (ENSPMRG00000000071) #30	ENSPMRG00000000077	ENSPMRG00000000078	TRAF3 (ENSPMRG00000000082) #32	RCOR1 (ENSPMRG00000000084) #33	ENSPMRG00000000085	ANKRD9 (ENSPMRG00000000086)	TECPR2 (ENSPMRG00000000123) #34	ENSPMRG00000000348 #35	MOK (ENSPMRG00000000373) #37
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00390000001610.f #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01040000244769	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b
Lizard	MODERN SPECIES	846															TRMT61A (ENSACAG00000000860) #21	CKB (ENSACAG00000000789) #22	MARK3 (ENSACAG00000000652) #23	EIF5 (ENSACAG00000000485) #25	ENSACAG00000000473	TNFAIP2 (ENSACAG00000000366) #27	ENSACAG00000028260 #28	ENSACAG00000038694	CDC42BPB (ENSACAG00000000214) #30	ENSACAG00000043360	AMN (ENSACAG00000000207) #31	ENSACAG00000043264	TRAF3 (ENSACAG00000000202) #32	ENSACAG00000043804	ENSACAG00000035613	RCOR1 (ENSACAG00000000182) #33	ANKRD9 (ENSACAG00000000180)
Elapidae	ANCESTRAL SPECIES	3	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00940000156103.h
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000157058	ENSGT00870000136707	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00940000156103.h	ENSGT01030000234620.a.a.a.a.a.b.d
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00940000157058	ENSGT00870000136707	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610.e #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o #27	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00940000159582 #37	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT00940000156103.h	ENSGT01030000234620.a.a.a.a.a.b.c
Eastern brown snake	MODERN SPECIES	10	CEP170B (ENSPTXG00000014952)	ENSPTXG00000014951	INF2 (ENSPTXG00000014950) #7	TMEM179 (ENSPTXG00000014949) #8	KIF26A (ENSPTXG00000014948) #10	ASPG (ENSPTXG00000014946) #11	TDRD9 (ENSPTXG00000014945) #13	RD3L (ENSPTXG00000014943) #12	PPP1R13B (ENSPTXG00000014936) #15	ZFYVE21 (ENSPTXG00000014932) #16	XRCC3 (ENSPTXG00000014928) #17	KLC1 (ENSPTXG00000014922) #18	COA8 (ENSPTXG00000014918) #20	BAG5 (ENSPTXG00000014916) #19	TRMT61A (ENSPTXG00000014914) #21	CKB (ENSPTXG00000014912) #22	MARK3 (ENSPTXG00000014907) #23	EIF5 (ENSPTXG00000014900) #25	ENSPTXG00000014897 #27	ENSPTXG00000014894	CDC42BPB (ENSPTXG00000014886) #30	TRAF3 (ENSPTXG00000014831) #32	RCOR1 (ENSPTXG00000014828) #33	ANKRD9 (ENSPTXG00000014826)	TECPR2 (ENSPTXG00000014824) #34	CINP (ENSPTXG00000014823) #35	MOK (ENSPTXG00000014822) #37	WDR20 (ENSPTXG00000014821)	ENSPTXG00000014820	HSP90AA1 (ENSPTXG00000014819)	DYNC1H1 (ENSPTXG00000014617)
Mainland tiger snake	MODERN SPECIES	31	ENSNSUG00000018268	ENSNSUG00000018267	INF2 (ENSNSUG00000018266) #7	TMEM179 (ENSNSUG00000018265) #8	KIF26A (ENSNSUG00000018264) #10	ASPG (ENSNSUG00000018262) #11	TDRD9 (ENSNSUG00000018261) #13	RD3L (ENSNSUG00000018260) #12	PPP1R13B (ENSNSUG00000018258) #15	ZFYVE21 (ENSNSUG00000018257) #16	XRCC3 (ENSNSUG00000018256) #17	KLC1 (ENSNSUG00000017146) #18	COA8 (ENSNSUG00000017138) #20	BAG5 (ENSNSUG00000017137) #19	TRMT61A (ENSNSUG00000017136) #21	CKB (ENSNSUG00000017135) #22	MARK3 (ENSNSUG00000017112) #23
Blue-lipped sea krait	MODERN SPECIES	5329															ENSLLTG00000008907	CKB (ENSLLTG00000008892) #22	ENSLLTG00000008874 #23
Indian cobra	MODERN SPECIES		ENSNNAG00000002468	ENSNNAG00000002460	INF2 (ENSNNAG00000002215) #7	TMEM179 (ENSNNAG00000002157) #8	KIF26A (ENSNNAG00000002137) #10	ASPG (ENSNNAG00000002110) #11	RD3L (ENSNNAG00000002097) #12	TDRD9 (ENSNNAG00000002011) #13	PPP1R13B (ENSNNAG00000001963) #15	ZFYVE21 (ENSNNAG00000001939) #16	XRCC3 (ENSNNAG00000001910) #17	KLC1 (ENSNNAG00000001861) #18	COA8 (ENSNNAG00000001843) #20	BAG5 (ENSNNAG00000001835) #19	TRMT61A (ENSNNAG00000001827) #21	CKB (ENSNNAG00000001817) #22	MARK3 (ENSNNAG00000001732) #23	EIF5 (ENSNNAG00000001684) #25	ENSNNAG00000001613 #27	ENSNNAG00000001571	CDC42BPB (ENSNNAG00000001542) #30	TRAF3 (ENSNNAG00000001458) #32	RCOR1 (ENSNNAG00000001407) #33	ANKRD9 (ENSNNAG00000001383)	TECPR2 (ENSNNAG00000001359) #34	CINP (ENSNNAG00000001334) #35	ENSNNAG00000001317 #36	MOK (ENSNNAG00000001306) #37	WDR20 (ENSNNAG00000001295)	HSP90AA1 (ENSNNAG00000001276)	ENSNNAG00000001266
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o.f #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Testudinidae	ANCESTRAL SPECIES	37	ENSGT00390000015553.a.b.a	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o.f #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234613.b.a.a.o.e #27	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Goode s thornscrub tortoise	MODERN SPECIES	18	SIVA1 (ENSGEVG00005002396)	ADSS1 (ENSGEVG00005002439)	INF2 (ENSGEVG00005002490) #7	TMEM179 (ENSGEVG00005002509) #8	ASPG (ENSGEVG00005002564) #11	TDRD9 (ENSGEVG00005002591) #13	RD3L (ENSGEVG00005002616) #12	ENSGEVG00005002623	PPP1R13B (ENSGEVG00005002644) #15	ZFYVE21 (ENSGEVG00005002689) #16	XRCC3 (ENSGEVG00005002713) #17	KLC1 (ENSGEVG00005002735) #18	COA8 (ENSGEVG00005002759) #20	BAG5 (ENSGEVG00005002774) #19	TRMT61A (ENSGEVG00005002782) #21	CKB (ENSGEVG00005002791) #22	ENSGEVG00005002800	MARK3 (ENSGEVG00005002845) #23	EIF5 (ENSGEVG00005002933) #25	ENSGEVG00005002961 #27	ENSGEVG00005002976 #27	ENSGEVG00005002989	CDC42BPB (ENSGEVG00005003012) #30	AMN (ENSGEVG00005003066) #31	TRAF3 (ENSGEVG00005003080) #32	RCOR1 (ENSGEVG00005003100) #33	ANKRD9 (ENSGEVG00005003116)	TECPR2 (ENSGEVG00005003131) #34	CINP (ENSGEVG00005003155) #35	ZNF839 (ENSGEVG00005003160) #36	MOK (ENSGEVG00005003176) #37
Abingdon island giant tortoise	MODERN SPECIES	2833	ENSCABG00000022031 #7	ENSCABG00000022030	TMEM179 (ENSCABG00000022028) #8	KIF26A (ENSCABG00000022021) #10	ASPG (ENSCABG00000022017) #11	TDRD9 (ENSCABG00000022014) #13	RD3L (ENSCABG00000022011) #12	ENSCABG00000022010	PPP1R13B (ENSCABG00000021988) #15	ZFYVE21 (ENSCABG00000021986) #16	XRCC3 (ENSCABG00000021985) #17	KLC1 (ENSCABG00000021157) #18	COA8 (ENSCABG00000021038) #20	BAG5 (ENSCABG00000021037) #19	TRMT61A (ENSCABG00000021033) #21	CKB (ENSCABG00000021028) #22	ENSCABG00000021025	ENSCABG00000021022	MARK3 (ENSCABG00000021018) #23	EIF5 (ENSCABG00000021009) #25	TNFAIP2 (ENSCABG00000021007) #27	ENSCABG00000021005 #28	ENSCABG00000021003	CDC42BPB (ENSCABG00000017229) #30	AMN (ENSCABG00000017018) #31	TRAF3 (ENSCABG00000016980) #32
Emydidae	ANCESTRAL SPECIES	43	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000153118.db.a.a.b.a.a.a.b.a.a	ENSGT01100000263506.a	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o.f #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35
painted turtle	MODERN SPECIES	701	ADSS1 (ENSCPBG00000020185)	INF2 (ENSCPBG00000020190) #7	TMEM179 (ENSCPBG00000020195) #8	KIF26A (ENSCPBG00000020200) #10	ASPG (ENSCPBG00000020202) #11	TDRD9 (ENSCPBG00000020203) #13	RD3L (ENSCPBG00000020206) #12	ENSCPBG00000020209	PPP1R13B (ENSCPBG00000020221) #15	ZFYVE21 (ENSCPBG00000020236) #16	XRCC3 (ENSCPBG00000020246) #17	KLC1 (ENSCPBG00000020262) #18	COA8 (ENSCPBG00000020283) #20	BAG5 (ENSCPBG00000020285) #19	TRMT61A (ENSCPBG00000020287) #21	CKB (ENSCPBG00000020289) #22	ENSCPBG00000020294	MARK3 (ENSCPBG00000020304) #23	EIF5 (ENSCPBG00000020321) #25	ENSCPBG00000020327 #27	TNFAIP2 (ENSCPBG00000020328) #27	EXOC3L4 (ENSCPBG00000020331) #28	ENSCPBG00000020336	PPP1R36 (ENSCPBG00000020341)	BRF1 (ENSCPBG00000020355)	BTBD6 (ENSCPBG00000020362)	NUDT14 (ENSCPBG00000020368)	ENSCPBG00000020372	JAG2 (ENSCPBG00000020376)	ENSCPBG00000020384	CDCA4 (ENSCPBG00000020385)
Three-toed box turtle	MODERN SPECIES	87	ADSS1 (ENSTMTG00000017241)	INF2 (ENSTMTG00000017189) #7	TMEM179 (ENSTMTG00000017156) #8	KIF26A (ENSTMTG00000017129) #10	ASPG (ENSTMTG00000017026) #11	TDRD9 (ENSTMTG00000016940) #13	RD3L (ENSTMTG00000016920) #12	ENSTMTG00000016912	PPP1R13B (ENSTMTG00000016842) #15	ZFYVE21 (ENSTMTG00000016813) #16	XRCC3 (ENSTMTG00000016806) #17	KLC1 (ENSTMTG00000016744) #18	COA8 (ENSTMTG00000016730) #20	BAG5 (ENSTMTG00000016723) #19	TRMT61A (ENSTMTG00000016715) #21	CKB (ENSTMTG00000016679) #22	ENSTMTG00000016649	MARK3 (ENSTMTG00000016575) #23	EIF5 (ENSTMTG00000016550) #25	ENSTMTG00000016536 #27	TNFAIP2 (ENSTMTG00000016496) #27	EXOC3L4 (ENSTMTG00000016474) #28	ENSTMTG00000016459	CDC42BPB (ENSTMTG00000016376) #30	AMN (ENSTMTG00000016350) #31	TRAF3 (ENSTMTG00000016218) #32	RCOR1 (ENSTMTG00000016172) #33	ANKRD9 (ENSTMTG00000016152)	TECPR2 (ENSTMTG00000016089) #34	CINP (ENSTMTG00000016061) #35	ENSTMTG00000016045 #36
Chinese turtle	MODERN SPECIES	1684															TRMT61A (ENSPSIG00000015186) #21	CKB (ENSPSIG00000014479) #22	MARK3 (ENSPSIG00000012322) #23
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Australian saltwater crocodile	MODERN SPECIES	64	ENSCPRG00005015958	ADSS1 (ENSCPRG00005015931)	INF2 (ENSCPRG00005015924) #7	TMEM179 (ENSCPRG00005015921) #8	KIF26A (ENSCPRG00005015914) #10	ASPG (ENSCPRG00005015909) #11	RD3L (ENSCPRG00005015908) #12	TDRD9 (ENSCPRG00005015883) #13	ENSCPRG00005015875	PPP1R13B (ENSCPRG00005015869) #15	ZFYVE21 (ENSCPRG00005015861) #16	XRCC3 (ENSCPRG00005015856) #17	KLC1 (ENSCPRG00005015847) #18	BAG5 (ENSCPRG00005015845) #19	TRMT61A (ENSCPRG00005015843) #21	CKB (ENSCPRG00005015837) #22	MARK3 (ENSCPRG00005015816) #23	EIF5 (ENSCPRG00005015803) #25	TNFAIP2 (ENSCPRG00005015793) #27	EXOC3L4 (ENSCPRG00005015790) #28	ENSCPRG00005015787	CDC42BPB (ENSCPRG00005013613) #30	AMN (ENSCPRG00005013401) #31	TRAF3 (ENSCPRG00005013397) #32	RCOR1 (ENSCPRG00005013335) #33	ANKRD9 (ENSCPRG00005013319)	TECPR2 (ENSCPRG00005013314) #34	CINP (ENSCPRG00005013311) #35	ZNF839 (ENSCPRG00005013306) #36	MOK (ENSCPRG00005013302) #37	WDR20 (ENSCPRG00005013296)
Aves	ANCESTRAL SPECIES	2	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
African ostrich	MODERN SPECIES	631	INF2 (ENSSCUG00000009391) #7	TMEM179 (ENSSCUG00000009385) #8	ENSSCUG00000009381	KIF26A (ENSSCUG00000009371) #10	ASPG (ENSSCUG00000009367) #11	TDRD9 (ENSSCUG00000009364) #13	RD3L (ENSSCUG00000009360) #12	ENSSCUG00000009358	PPP1R13B (ENSSCUG00000009352) #15	ZFYVE21 (ENSSCUG00000009346) #16	XRCC3 (ENSSCUG00000009341) #17	COA8 (ENSSCUG00000009337) #20	KLC1 (ENSSCUG00000009335) #18	BAG5 (ENSSCUG00000009333) #19	TRMT61A (ENSSCUG00000009332) #21	CKB (ENSSCUG00000009331) #22	MARK3 (ENSSCUG00000009325) #23	EIF5 (ENSSCUG00000009314) #25	ENSSCUG00000009310 #27	TNFAIP2 (ENSSCUG00000009309) #27	EXOC3L4 (ENSSCUG00000009306) #28	ENSSCUG00000009304	CDC42BPB (ENSSCUG00000009294) #30	ENSSCUG00000009285 #31	TRAF3 (ENSSCUG00000009278) #32	RCOR1 (ENSSCUG00000009272) #33	TECPR2 (ENSSCUG00000009270) #34	CINP (ENSSCUG00000009269) #35	ZNF839 (ENSSCUG00000009267) #36	MOK (ENSSCUG00000009265) #37	WDR20 (ENSSCUG00000009264)
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Common canary	MODERN SPECIES	3	SIVA1 (ENSSCAG00000006412)	ADSS1 (ENSSCAG00000006419)	INF2 (ENSSCAG00000006426) #7	TMEM179 (ENSSCAG00000006441) #8	KIF26A (ENSSCAG00000006458) #10	ASPG (ENSSCAG00000006462) #11	RD3L (ENSSCAG00000006493) #12	ENSSCAG00000006497	PPP1R13B (ENSSCAG00000006505) #15	ZFYVE21 (ENSSCAG00000006542) #16	XRCC3 (ENSSCAG00000006549) #17	KLC1 (ENSSCAG00000006554) #18	COA8 (ENSSCAG00000006564) #20	BAG5 (ENSSCAG00000006565) #19	TRMT61A (ENSSCAG00000006568) #21	CKB (ENSSCAG00000006573) #22	ENSSCAG00000006575	MARK3 (ENSSCAG00000006579) #23	EIF5 (ENSSCAG00000006596) #25	ENSSCAG00000006610 #27	TNFAIP2 (ENSSCAG00000006616) #27	EXOC3L4 (ENSSCAG00000006619) #28	ENSSCAG00000006626	CDC42BPB (ENSSCAG00000006631) #30	AMN (ENSSCAG00000006654) #31	TRAF3 (ENSSCAG00000006668) #32	RCOR1 (ENSSCAG00000006687) #33	ANKRD9 (ENSSCAG00000006693)	TECPR2 (ENSSCAG00000006698) #34	CINP (ENSSCAG00000006723) #35	ZNF839 (ENSSCAG00000006724) #36
Zebra finch	MODERN SPECIES	27	AKT1 (ENSTGUG00000012904)	ENSTGUG00000012902	ADSS1 (ENSTGUG00000012901)	INF2 (ENSTGUG00000012898) #7	TMEM179 (ENSTGUG00000029779) #8	KIF26A (ENSTGUG00000012894) #10	ASPG (ENSTGUG00000012891) #11	RD3L (ENSTGUG00000012886) #12	TDRD9 (ENSTGUG00000012887) #13	PPP1R13B (ENSTGUG00000012883) #15	ZFYVE21 (ENSTGUG00000012879) #16	XRCC3 (ENSTGUG00000012872) #17	KLC1 (ENSTGUG00000012874) #18	BAG5 (ENSTGUG00000012866) #19	TRMT61A (ENSTGUG00000012865) #21	CKB (ENSTGUG00000012861) #22	MARK3 (ENSTGUG00000012848) #23	EIF5 (ENSTGUG00000012841) #25	ENSTGUG00000012839 #27	TNFAIP2 (ENSTGUG00000012835) #27	EXOC3L4 (ENSTGUG00000012834) #28	ENSTGUG00000020932	CDC42BPB (ENSTGUG00000012826) #30	AMN (ENSTGUG00000012825) #31	TRAF3 (ENSTGUG00000012821) #32	RCOR1 (ENSTGUG00000012820) #33	ANKRD9 (ENSTGUG00000012819)	TECPR2 (ENSTGUG00000012816) #34	CINP (ENSTGUG00000012815) #35	ZNF839 (ENSTGUG00000012812) #36	WDR20 (ENSTGUG00000012810)
Medium ground finch	MODERN SPECIES	6	ENSGFOG00000008491 #7	TMEM179 (ENSGFOG00000008487) #8	KIF26A (ENSGFOG00000008481) #10	ASPG (ENSGFOG00000008460) #11	TDRD9 (ENSGFOG00000008422) #13	RD3L (ENSGFOG00000008409) #12	ENSGFOG00000008405	PPP1R13B (ENSGFOG00000008387) #15	ZFYVE21 (ENSGFOG00000008376) #16	XRCC3 (ENSGFOG00000008368) #17	KLC1 (ENSGFOG00000008356) #18	ENSGFOG00000008347	BAG5 (ENSGFOG00000008343) #19	TRMT61A (ENSGFOG00000008333) #21	ENSGFOG00000008329	CKB (ENSGFOG00000008315) #22	MARK3 (ENSGFOG00000008237) #23	EIF5 (ENSGFOG00000008215) #25	TNFAIP2 (ENSGFOG00000008204) #27	ENSGFOG00000008193	CDC42BPB (ENSGFOG00000007354) #30	AMN (ENSGFOG00000007277) #31	TRAF3 (ENSGFOG00000007259) #32	RCOR1 (ENSGFOG00000007179) #33	TECPR2 (ENSGFOG00000007128) #34	CINP (ENSGFOG00000007122) #35	ZNF839 (ENSGFOG00000007114) #36	WDR20 (ENSGFOG00000007108)	HSP90AA1 (ENSGFOG00000007098)	DYNC1H1 (ENSGFOG00000006784)	PPP2R5C (ENSGFOG00000006704)
Flycatcher	MODERN SPECIES	24	AKT1 (ENSFALG00000002974)	ADSS1 (ENSFALG00000002967)	INF2 (ENSFALG00000002942) #7	TMEM179 (ENSFALG00000002938) #8	KIF26A (ENSFALG00000027781) #10	ASPG (ENSFALG00000002919) #11	TDRD9 (ENSFALG00000002911) #13	RD3L (ENSFALG00000002905) #12	ENSFALG00000002903	PPP1R13B (ENSFALG00000002885) #15	ZFYVE21 (ENSFALG00000025223) #16	XRCC3 (ENSFALG00000002874) #17	KLC1 (ENSFALG00000002870) #18	BAG5 (ENSFALG00000028902) #19	TRMT61A (ENSFALG00000002855) #21	CKB (ENSFALG00000002845) #22	MARK3 (ENSFALG00000002834) #23	ENSFALG00000002816 #25	ENSFALG00000002809 #27	TNFAIP2 (ENSFALG00000002805) #27	EXOC3L4 (ENSFALG00000002799) #28	ENSFALG00000002795	CDC42BPB (ENSFALG00000002787) #30	AMN (ENSFALG00000002778) #31	TRAF3 (ENSFALG00000024309) #32	RCOR1 (ENSFALG00000002760) #33	ANKRD9 (ENSFALG00000026771)	TECPR2 (ENSFALG00000002756) #34	CINP (ENSFALG00000002753) #35	ENSFALG00000002740	WDR20 (ENSFALG00000027732)
Great tit	MODERN SPECIES	25	ADSS1 (ENSPMJG00000000977)	INF2 (ENSPMJG00000000946) #7	TMEM179 (ENSPMJG00000000866) #8	KIF26A (ENSPMJG00000000742) #10	ASPG (ENSPMJG00000000689) #11	RD3L (ENSPMJG00000000680) #12	TDRD9 (ENSPMJG00000000607) #13	ENSPMJG00000000602	PPP1R13B (ENSPMJG00000000511) #15	ZFYVE21 (ENSPMJG00000000476) #16	XRCC3 (ENSPMJG00000000462) #17	KLC1 (ENSPMJG00000000403) #18	COA8 (ENSPMJG00000000392) #20	BAG5 (ENSPMJG00000000386) #19	TRMT61A (ENSPMJG00000000367) #21	CKB (ENSPMJG00000000334) #22	MARK3 (ENSPMJG00000000134) #23	EIF5 (ENSPMJG00000000070) #25	ENSPMJG00000017335 #27	TNFAIP2 (ENSPMJG00000017334) #27	ENSPMJG00000017333	EXOC3L4 (ENSPMJG00000017332) #28	ENSPMJG00000017330	CDC42BPB (ENSPMJG00000017329) #30	AMN (ENSPMJG00000017328) #31	TRAF3 (ENSPMJG00000017327) #32	RCOR1 (ENSPMJG00000017325) #33	ANKRD9 (ENSPMJG00000017323)	TECPR2 (ENSPMJG00000017322) #34	CINP (ENSPMJG00000017321) #35	ZNF839 (ENSPMJG00000017320) #36
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01030000234848	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.o.d #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Kakapo	MODERN SPECIES	21	ADSS1 (ENSSHBG00005011467)	INF2 (ENSSHBG00005011499) #7	TMEM179 (ENSSHBG00005011522) #8	KIF26A (ENSSHBG00005011575) #10	ASPG (ENSSHBG00005011634) #11	TDRD9 (ENSSHBG00005011669) #13	RD3L (ENSSHBG00005011705) #12	ENSSHBG00005011720	PPP1R13B (ENSSHBG00005011748) #15	ZFYVE21 (ENSSHBG00005011794) #16	XRCC3 (ENSSHBG00005011815) #17	KLC1 (ENSSHBG00005011850) #18	COA8 (ENSSHBG00005011882) #20	BAG5 (ENSSHBG00005011899) #19	TRMT61A (ENSSHBG00005011913) #21	CKB (ENSSHBG00005011927) #22	ENSSHBG00005011946	MARK3 (ENSSHBG00005011987) #23	EIF5 (ENSSHBG00005012032) #25	ENSSHBG00005012075 #27	ENSSHBG00005012162 #27	ENSSHBG00005012183	CDC42BPB (ENSSHBG00005012211) #30	AMN (ENSSHBG00005000515) #31	TRAF3 (ENSSHBG00005000526) #32	RCOR1 (ENSSHBG00005000534) #33	ANKRD9 (ENSSHBG00005000537)	TECPR2 (ENSSHBG00005000551) #34	CINP (ENSSHBG00005010419) #35	ZNF839 (ENSSHBG00005010446) #36	ENSSHBG00005010479
Golden eagle	MODERN SPECIES	11	ADSS1 (ENSACCG00020014725)	INF2 (ENSACCG00020014757) #7	TMEM179 (ENSACCG00020014775) #8	KIF26A (ENSACCG00020014793) #10	ASPG (ENSACCG00020014821) #11	TDRD9 (ENSACCG00020014851) #13	RD3L (ENSACCG00020014869) #12	ENSACCG00020014880	PPP1R13B (ENSACCG00020014921) #15	ZFYVE21 (ENSACCG00020015003) #16	XRCC3 (ENSACCG00020015032) #17	KLC1 (ENSACCG00020015060) #18	COA8 (ENSACCG00020015086) #20	BAG5 (ENSACCG00020015101) #19	TRMT61A (ENSACCG00020015111) #21	CKB (ENSACCG00020015131) #22	MARK3 (ENSACCG00020015194) #23	EIF5 (ENSACCG00020015299) #25	TNFAIP2 (ENSACCG00020015321) #27	EXOC3L4 (ENSACCG00020015336) #28	ENSACCG00020000291	ENSACCG00020000293	CDC42BPB (ENSACCG00020000371) #30	AMN (ENSACCG00020000429) #31	TRAF3 (ENSACCG00020000453) #32	RCOR1 (ENSACCG00020000489) #33	ANKRD9 (ENSACCG00020000518)	TECPR2 (ENSACCG00020000563) #34	CINP (ENSACCG00020000602) #35	ZNF839 (ENSACCG00020000654) #36	MOK (ENSACCG00020000690) #37
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463.i #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283.db #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000015553.a.b	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463.i #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283.db #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Turkey	MODERN SPECIES	25	ADSS1 (ENSMGAG00000013451)	ENSMGAG00000017690 #7	ENSMGAG00000013449 #7	TMEM179 (ENSMGAG00000013443) #8	KIF26A (ENSMGAG00000013441) #10	ASPG (ENSMGAG00000013435) #11	RD3L (ENSMGAG00000019047) #12	TDRD9 (ENSMGAG00000013431) #13	ENSMGAG00000019587	PPP1R13B (ENSMGAG00000013421) #15	ZFYVE21 (ENSMGAG00000019643) #16	XRCC3 (ENSMGAG00000013417) #17	KLC1 (ENSMGAG00000013413) #18	BAG5 (ENSMGAG00000015387) #19	TRMT61A (ENSMGAG00000013412) #21	CKB (ENSMGAG00000013407) #22	MARK3 (ENSMGAG00000013401) #23	EIF5 (ENSMGAG00000013398) #25	TNFAIP2 (ENSMGAG00000013394) #27	EXOC3L4 (ENSMGAG00000013393) #28	ENSMGAG00000021489	CDC42BPB (ENSMGAG00000013377) #30	AMN (ENSMGAG00000019544) #31	TRAF3 (ENSMGAG00000013373) #32	RCOR1 (ENSMGAG00000013372) #33	ANKRD9 (ENSMGAG00000018888)	ENSMGAG00000022478 #34	ENSMGAG00000013366 #34	CINP (ENSMGAG00000022897) #35	ZNF839 (ENSMGAG00000013364) #36	MOK (ENSMGAG00000013359) #37
Chicken	MODERN SPECIES	34	INF2 (ENSGALG00010017283) #7	TMEM179 (ENSGALG00010016897) #8	KIF26A (ENSGALG00010016247) #10	ASPG (ENSGALG00010016159) #11	RD3L (ENSGALG00010016115) #12	TDRD9 (ENSGALG00010016086) #13	C14orf2 (ENSGALG00010016066)	ENSGALG00010018488 #15	ENSGALG00010018486 #15	ZFYVE21 (ENSGALG00010016049) #16	XRCC3 (ENSGALG00010016004) #17	KLC1 (ENSGALG00010015964) #18	COA8 (ENSGALG00010015916) #20	BAG5 (ENSGALG00010015906) #19	TRMT61A (ENSGALG00010015879) #21	CKB (ENSGALG00010015804) #22	MARK3 (ENSGALG00010015792) #23	EIF5 (ENSGALG00010015759) #25	ENSGALG00010015706 #27	TNFAIP2 (ENSGALG00010015698) #27	EXOC3L4 (ENSGALG00010015691) #28	ENSGALG00010015643	CDC42BPB (ENSGALG00010015157) #30	AMN (ENSGALG00010015137) #31	TRAF3 (ENSGALG00010017049) #32	RCOR1 (ENSGALG00010016918) #33	ANKRD9 (ENSGALG00010017304)	TECPR2 (ENSGALG00010017248) #34	CINP (ENSGALG00010017208) #35	ZNF839 (ENSGALG00010017187) #36	MOK (ENSGALG00010017148) #37
Japanese quail	MODERN SPECIES	23	ADSS1 (ENSCJPG00005003017)	ENSCJPG00005003016 #7	ENSCJPG00005003014 #7	TMEM179 (ENSCJPG00005003011) #8	KIF26A (ENSCJPG00005002989) #10	ASPG (ENSCJPG00005002984) #11	RD3L (ENSCJPG00005002982) #12	ENSCJPG00005002980	TDRD9 (ENSCJPG00005002971) #13	PPP1R13B (ENSCJPG00005002964) #15	ZFYVE21 (ENSCJPG00005002962) #16	XRCC3 (ENSCJPG00005002960) #17	KLC1 (ENSCJPG00005002948) #18	BAG5 (ENSCJPG00005002943) #19	TRMT61A (ENSCJPG00005002938) #21	CKB (ENSCJPG00005002930) #22	MARK3 (ENSCJPG00005002892) #23	EIF5 (ENSCJPG00005002874) #25	ENSCJPG00005002868 #27	TNFAIP2 (ENSCJPG00005002857) #27	EXOC3L4 (ENSCJPG00005002850) #28	ENSCJPG00005002845	CDC42BPB (ENSCJPG00005002807) #30	ENSCJPG00005002800 #31	TRAF3 (ENSCJPG00005002792) #32	RCOR1 (ENSCJPG00005002777) #33	ANKRD9 (ENSCJPG00005002774)	TECPR2 (ENSCJPG00005002769) #34	ENSCJPG00005002765 #35	ZNF839 (ENSCJPG00005002762) #36	MOK (ENSCJPG00005002758) #37
Anatidae	ANCESTRAL SPECIES	9	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000171479	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00390000002089.b #12	ENSGT00940000157035 #13	ENSGT01030000235387	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555.m #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.p #27	ENSGT01030000234613.b.a.a.o #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37
Pink-footed goose	MODERN SPECIES	99	INF2 (ENSABRG00000012307) #7	TMEM179 (ENSABRG00000012263) #8	ENSABRG00000012252	KIF26A (ENSABRG00000012218) #10	ASPG (ENSABRG00000012178) #11	RD3L (ENSABRG00000012171) #12	TDRD9 (ENSABRG00000012064) #13	ENSABRG00000012044	PPP1R13B (ENSABRG00000011987) #15	ZFYVE21 (ENSABRG00000011932) #16	XRCC3 (ENSABRG00000011924) #17	KLC1 (ENSABRG00000011905) #18	COA8 (ENSABRG00000011845) #20	BAG5 (ENSABRG00000011837) #19	TRMT61A (ENSABRG00000011832) #21	CKB (ENSABRG00000011821) #22	ENSABRG00000011812	MARK3 (ENSABRG00000011751) #23	EIF5 (ENSABRG00000011716) #25	ENSABRG00000011706 #27	TNFAIP2 (ENSABRG00000011698) #27	EXOC3L4 (ENSABRG00000011682) #28	ENSABRG00000011677	ENSABRG00000011667	CDC42BPB (ENSABRG00000011640) #30	AMN (ENSABRG00000011621) #31	TRAF3 (ENSABRG00000011595) #32	RCOR1 (ENSABRG00000011524) #33	ANKRD9 (ENSABRG00000011496)	TECPR2 (ENSABRG00000011320) #34	ENSABRG00000011296 #35
Duck	DUPLICATION
Duck	MODERN SPECIES	710																ENSAPLG00000022859 #22
Duck	MODERN SPECIES	23	INF2 (ENSAPLG00000015886) #7	TMEM179 (ENSAPLG00000007213) #8	ENSAPLG00000029958	ENSAPLG00000029098	ASPG (ENSAPLG00000008103) #11	RD3L (ENSAPLG00000007355) #12	TDRD9 (ENSAPLG00000007429) #13	ENSAPLG00000029834	PPP1R13B (ENSAPLG00000007222) #15	ZFYVE21 (ENSAPLG00000007132) #16	XRCC3 (ENSAPLG00000006917) #17	ENSAPLG00000006410 #18	ENSAPLG00000028568	BAG5 (ENSAPLG00000001982) #19	TRMT61A (ENSAPLG00000011344) #21	ENSAPLG00000010931 #22	MARK3 (ENSAPLG00000010536) #23	EIF5 (ENSAPLG00000015675) #25	ENSAPLG00000015755 #27	TNFAIP2 (ENSAPLG00000012637) #27	ENSAPLG00000027314 #28	ENSAPLG00000010511	CDC42BPB (ENSAPLG00000010525) #30	AMN (ENSAPLG00000011646) #31	TRAF3 (ENSAPLG00000011933) #32	ENSAPLG00000019480	RCOR1 (ENSAPLG00000012214) #33	ANKRD9 (ENSAPLG00000017806)	TECPR2 (ENSAPLG00000012414) #34	CINP (ENSAPLG00000012968) #35	ZNF839 (ENSAPLG00000013003) #36
Anura	ANCESTRAL SPECIES	22	ENSGT00940000155691.d #7	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00940000159582 #37	ENSGT00390000007686.b.d
Frog	MODERN SPECIES	8	kif26a (ENSXETG00000023080) #10	aspg (ENSXETG00000023076) #11	ENSXETG00000036467	rd3l (ENSXETG00000037614) #12	tdrd9 (ENSXETG00000023069) #13	ENSXETG00000046748	ENSXETG00000039943	ppp1r13b (ENSXETG00000023064) #15	zfyve21 (ENSXETG00000023062) #16	xrcc3 (ENSXETG00000023061) #17	ENSXETG00000048629	klc1 (ENSXETG00000023054) #18	bag5 (ENSXETG00000023051) #19	trmt61a (ENSXETG00000026907) #21	ENSXETG00000037885	ckb (ENSXETG00000023038) #22	mark3 (ENSXETG00000012767) #23	eif5 (ENSXETG00000012766) #25	tnfaip2 (ENSXETG00000032847) #27	exoc3l4 (ENSXETG00000048509) #28	XB5959262 [provisional:lbh] (ENSXETG00000039630)	cdc42bpb (ENSXETG00000025675) #30	amn (ENSXETG00000012751) #31	traf3 (ENSXETG00000012746) #32	ENSXETG00000044836	rcor1 (ENSXETG00000012743) #33	ankrd9 (ENSXETG00000047849)	tecpr2 (ENSXETG00000010256) #34	cinp (ENSXETG00000010255) #35	znf839 (ENSXETG00000034448) #36	mok (ENSXETG00000031912) #37
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000023394	B9D2 (ENSLLEG00000023473)	CCDC97 (ENSLLEG00000023523)	HNRNPUL1 (ENSLLEG00000023596)	ENSLLEG00000023859	ENSLLEG00000023960	ENSLLEG00000023989	ENSLLEG00000024052	ENSLLEG00000024221	ENSLLEG00000024275	ENSLLEG00000024325	ENSLLEG00000024704	ENSLLEG00000024869	ENSLLEG00000024890	ENSLLEG00000024923	ENSLLEG00000025062 #22	ENSLLEG00000025104	ENSLLEG00000025172	ENSLLEG00000025269	AXL (ENSLLEG00000025337)	ENSLLEG00000019816	ENSLLEG00000019840	ENSLLEG00000019907	ENSLLEG00000020013	ENSLLEG00000020169	ENSLLEG00000020222	ENSLLEG00000020307	ENSLLEG00000020415	ENSLLEG00000020511	ENSLLEG00000021268	ENSLLEG00000021421
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	4	KIF26A (ENSLLEG00000021526) #10	ENSLLEG00000021479	ENSLLEG00000021453	ASPG (ENSLLEG00000021055) #11	RD3L (ENSLLEG00000020992) #12	TDRD9 (ENSLLEG00000020393) #13	ENSLLEG00000020297	ENSLLEG00000020209	PPP1R13B (ENSLLEG00000019728) #15	ZFYVE21 (ENSLLEG00000023198) #16	XRCC3 (ENSLLEG00000023112) #17	KLC1 (ENSLLEG00000022478) #18	ENSLLEG00000022424	COA8 (ENSLLEG00000022330) #20	BAG5 (ENSLLEG00000022289) #19	ENSLLEG00000022228 #22	TRMT61A (ENSLLEG00000020392) #21	MARK3 (ENSLLEG00000020743) #23	EIF5 (ENSLLEG00000020253) #25	ENSLLEG00000020191	DYNC1H1 (ENSLLEG00000019315)	HSP90AA1 (ENSLLEG00000018506)	WDR20 (ENSLLEG00000018292)	MOK (ENSLLEG00000018125) #37	ENSLLEG00000017660 #27	ENSLLEG00000017564	ENSLLEG00000017433 #27	ENSLLEG00000017397	ENSLLEG00000016858 #28	ENSLLEG00000016729	CDC42BPB (ENSLLEG00000015661) #30
Leishan spiny toad	MODERN SPECIES	956															ENSLLEG00000009298	ENSLLEG00000009337 #22
Coelacanth	MODERN SPECIES	1129								TDRD9 (ENSLACG00000002257) #13	RD3L (ENSLACG00000005571) #12	PPP1R13B (ENSLACG00000006143) #15	KLC1 (ENSLACG00000008984) #18	XRCC3 (ENSLACG00000008697) #17	COA8 (ENSLACG00000009922) #20	BAG5 (ENSLACG00000010107) #19	TRMT61A (ENSLACG00000010801) #21	CKB (ENSLACG00000011177) #22	MARK3 (ENSLACG00000011533) #23	EIF5 (ENSLACG00000012744) #25	TNFAIP2 (ENSLACG00000013001) #27
Actinopterygii	ANCESTRAL SPECIES	63	ENSGT00940000156899	ENSGT00940000158583	ENSGT00940000155077	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00970000193712	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000009816	ENSGT00390000003299	ENSGT00940000158450	ENSGT00940000164423	ENSGT00390000017490	ENSGT00390000012351	ENSGT00390000015485	ENSGT00940000155832
Reedfish	MODERN SPECIES	7	ppm1aa (ENSECRG00000016240)	dhrs7 (ENSECRG00000016268)	pcnx4 (ENSECRG00000016288)	LRRC9 (ENSECRG00000016327)	RTN1 (ENSECRG00000016438)	ENSECRG00000016464	tdrd9 (ENSECRG00000016554) #13	atp5mj (ENSECRG00000016809)	ppp1r13bb (ENSECRG00000016829) #15	zfyve21 (ENSECRG00000016882) #16	xrcc3 (ENSECRG00000016923) #17	klc1a (ENSECRG00000016965) #18	coa8 (ENSECRG00000017048) #20	bag5 (ENSECRG00000017120) #19	trmt61a (ENSECRG00000017134) #21	ckba (ENSECRG00000017166) #22	ENSECRG00000017225	mark3a (ENSECRG00000017396) #23	eif5 (ENSECRG00000018080) #25	ENSECRG00000018122 #27	ENSECRG00000018166 #28	ENSECRG00000018222 #27	ENSECRG00000018278	cdc42bpb (ENSECRG00000018358) #30	AMN (ENSECRG00000018635) #31	TRAF3 (ENSECRG00000018733) #32	rcor1 (ENSECRG00000018779) #33	ankrd9 (ENSECRG00000018801)	tecpr2 (ENSECRG00000018822) #34	cinp (ENSECRG00000018863) #35	ENSECRG00000018884 #36
Neopterygii	ANCESTRAL SPECIES	43	ENSGT00940000156899	ENSGT00940000158583	ENSGT00940000155077	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b #22	ENSGT00970000193712	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000164834.b	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000163836.b	ENSGT00940000155654 #33	ENSGT00390000018116	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36
Spotted gar	MODERN SPECIES	673	six1b (ENSLOCG00000010086)	six6a (ENSLOCG00000010080)	ppm1aa (ENSLOCG00000010070)	dhrs7 (ENSLOCG00000010060)	pcnx4 (ENSLOCG00000010048)	LRRC9 (ENSLOCG00000010036)	rtn1b (ENSLOCG00000010017)	tdrd9 (ENSLOCG00000009992) #13	RD3L (ENSLOCG00000009985) #12	ppp1r13bb (ENSLOCG00000009968) #15	zfyve21 (ENSLOCG00000009956) #16	xrcc3 (ENSLOCG00000009948) #17	klc1a (ENSLOCG00000009937) #18	bag5 (ENSLOCG00000009928) #19	trmt61a (ENSLOCG00000009920) #21	ckba (ENSLOCG00000009908) #22	mark3a (ENSLOCG00000009889) #23	eif5 (ENSLOCG00000009881) #25	tnfaip2a (ENSLOCG00000009874) #27	ENSLOCG00000009862 #28	si:dkeyp-72h1.1 (ENSLOCG00000009854)	cdc42bpb (ENSLOCG00000009847) #30	AMN (ENSLOCG00000009838) #31	traf3 (ENSLOCG00000009826)	rcor1 (ENSLOCG00000009821) #33	ankrd9 (ENSLOCG00000009816)	tecpr2 (ENSLOCG00000009804) #34	cinp (ENSLOCG00000009791) #35	ENSLOCG00000009783 #36	ehd4 (ENSLOCG00000009774)	SPTBN5 (ENSLOCG00000009748)
Osteoglossocephalai	ANCESTRAL SPECIES	17				ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00940000166988	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164834.b	ENSGT01030000234517.H.a #30	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	85	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000156116.B	ENSGT00940000164854.b	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.a	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.y #22	ENSGT01030000234848	ENSGT00940000154862.x.a.a.b #23	ENSGT00390000016478.a #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT01030000234517.H.a #30	ENSGT00940000162008	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT01100000263537.b.b.c.b	ENSGT00950000183024.a.b.b.k	ENSGT00950000183095.a.b.a.b.a	ENSGT00390000017583	ENSGT00940000159485
Asian bonytongue	MODERN SPECIES	6	ppp2r5eb (ENSSFOG00015013333)	INF2 (ENSSFOG00015013387) ##7	KCNH5 (ENSSFOG00015013498)	gphb5 (ENSSFOG00015013528)	ENSSFOG00015026395	esr2b (ENSSFOG00015013629)	ENSSFOG00015013684	nudt14 (ENSSFOG00015026877)	brf1b (ENSSFOG00015013763)	btbd6b (ENSSFOG00015028046)	zfyve21 (ENSSFOG00015013789) #16	klc1a (ENSSFOG00015013834) #18	coa8 (ENSSFOG00015013934) #20	bag5 (ENSSFOG00015032065) #19	trmt61a (ENSSFOG00015032190) #21	CKB (ENSSFOG00015012559) #22	ENSSFOG00015028031	ENSSFOG00015024793	mark3b (ENSSFOG00015014033) #23	eif5 (ENSSFOG00015014173) #25	ENSSFOG00015014202 #27	ENSSFOG00015014222 #28	ENSSFOG00015014234 #28	ENSSFOG00015014250	cdc42bpb (ENSSFOG00015014302) #30	ENSSFOG00015014557	ENSSFOG00015014569	ENSSFOG00015026321	cdca4 (ENSSFOG00015014598)	gpr132b (ENSSFOG00015014606)	vipas39 (ENSSFOG00015014621)
P. kingsleyae	MODERN SPECIES	215	KCNH5 (ENSPKIG00000018565)	gphb5 (ENSPKIG00000018593)	ENSPKIG00000018623	ENSPKIG00000018674	ENSPKIG00000018755	esr2b (ENSPKIG00000018813)	ENSPKIG00000018868	NUDT14 (ENSPKIG00000018920)	brf1b (ENSPKIG00000018964)	btbd6b (ENSPKIG00000019025)	zfyve21 (ENSPKIG00000019061) #16	KLC1 (ENSPKIG00000019107) #18	coa8 (ENSPKIG00000019126) #20	bag5 (ENSPKIG00000019147) #19	trmt61a (ENSPKIG00000019170) #21	CKB (ENSPKIG00000019193) #22	ENSPKIG00000019219	mark3b (ENSPKIG00000019336) #23	eif5 (ENSPKIG00000019525) #25
Osteoglossiformes	ANCESTRAL SPECIES	491														ENSGT00940000155720.b	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.z #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00390000016478.b #25	ENSGT01030000234613.b.a.a.d #27
P. kingsleyae	MODERN SPECIES	475													ENSPKIG00000009376	ZBTB25 (ENSPKIG00000009393)	xrcc3 (ENSPKIG00000009412) #17	CKB (ENSPKIG00000009426) #22	MARK3 (ENSPKIG00000009515) #23	EIF5 (ENSPKIG00000009676) #25	ENSPKIG00000009703 #27
Asian bonytongue	MODERN SPECIES	23	paqr7b (ENSSFOG00015021484)	ENSSFOG00015027073	ptprub (ENSSFOG00015011919)	ENSSFOG00015011989	ENSSFOG00015011999	taf12 (ENSSFOG00015028702)	rab42b (ENSSFOG00015012088)	ctps1b (ENSSFOG00015012240)	cited4b (ENSSFOG00015012426)	SCMH1 (ENSSFOG00015012440)	ENSSFOG00015012489	MED18 (ENSSFOG00015012516)	btbd6b (ENSSFOG00015012519)	xrcc3 (ENSSFOG00015012540) #17	ENSSFOG00015012580	CKB (ENSSFOG00015013978) #22	mark3b (ENSSFOG00015012596) #23	si:dkey-177p2.6 (ENSSFOG00015029150)	ahsa1a (ENSSFOG00015012724)	sel1l (ENSSFOG00015012779)	chga (ENSSFOG00015012826)	tmem251 (ENSSFOG00015012838)	ENSSFOG00015012854	ubr7 (ENSSFOG00015012865)	ENSSFOG00015012883	ASB2 (ENSSFOG00015012902)	ENSSFOG00015012927	zgc:100846 (ENSSFOG00015030089)	LINGO2 (ENSSFOG00015012996)	ENSSFOG00015013041	ENSSFOG00015024976
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	17	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155144.n	ENSGT00390000012424.b
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab #22	ENSGT00940000154862.x.b #23	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155144.n
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.ab #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.ab #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Pinecone sodierfish	MODERN SPECIES	14	ENSMMDG00005013873	ENSMMDG00005013875	ENSMMDG00005013877	gphb5 (ENSMMDG00005013879)	ENSMMDG00005013887	esr2b (ENSMMDG00005013970)	ENSMMDG00005013989	ENSMMDG00005014008	brf1a (ENSMMDG00005014581)	BTBD6 (ENSMMDG00005014588)	zfyve21 (ENSMMDG00005014592) #16	klc1a (ENSMMDG00005014608) #18	coa8 (ENSMMDG00005014651) #20	bag5 (ENSMMDG00005014652) #19	trmt61a (ENSMMDG00005014654) #21	ckba (ENSMMDG00005014660) #22	ENSMMDG00005014671	mark3a (ENSMMDG00005014673) #23	eif5 (ENSMMDG00005014680) #25	vps29 (ENSMMDG00005014685)	ENSMMDG00005014686 #27	ENSMMDG00005014688	ENSMMDG00005014691	si:dkey-177p2.6 (ENSMMDG00005014693)	cdca4 (ENSMMDG00005014694)	ahsa1b (ENSMMDG00005014695)	ENSMMDG00005014698	ENSMMDG00005014699	pgrmc2 (ENSMMDG00005014706)	asmt2 (ENSMMDG00005014707)	jade1 (ENSMMDG00005014709)
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.ab #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	251	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 #22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 #22	ENSHCOG00000000866	ENSHCOG00000009655 #22	ENSHCOG00000009672 #22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)	mtres1 (ENSHCOG00000010074)	bend3 (ENSHCOG00000010084)	pdss2 (ENSHCOG00000010113)	sobpa (ENSHCOG00000010221)	rock2a (ENSHCOG00000010292) ##30	slc66a3 (ENSHCOG00000010335)
Tiger tail seahorse	MODERN SPECIES	251	ENSHCOG00000008528	spdya (ENSHCOG00000008593)	trmt61b (ENSHCOG00000008607) ##21	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 #22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 #22	ENSHCOG00000000866	ENSHCOG00000009655 #22	ENSHCOG00000009672 #22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)	mtres1 (ENSHCOG00000010074)	bend3 (ENSHCOG00000010084)	pdss2 (ENSHCOG00000010113)
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	251	SLC4A1AP (ENSHCOG00000008452)	supt7l (ENSHCOG00000008465)	LRFN2 (ENSHCOG00000008506)	ENSHCOG00000008528	spdya (ENSHCOG00000008593)	trmt61b (ENSHCOG00000008607) ##21	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 #22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 #22	ENSHCOG00000000866	ENSHCOG00000009655 #22	ENSHCOG00000009672 #22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)
Tiger tail seahorse	MODERN SPECIES	251	trmt61b (ENSHCOG00000008607) ##21	nfkbiab (ENSHCOG00000009184)	PRORP (ENSHCOG00000009327)	ENSHCOG00000009349	ENSHCOG00000009389	ppp2r3c (ENSHCOG00000009418)	fam177a1 (ENSHCOG00000009440)	ttc7b (ENSHCOG00000009497)	ENSHCOG00000009524	NRDE2 (ENSHCOG00000009559)	ENSHCOG00000009581 #22	ENSHCOG00000009593	ENSHCOG00000009603	ENSHCOG00000009628 #22	ENSHCOG00000000866	ENSHCOG00000009655 #22	ENSHCOG00000009672 #22	ENSHCOG00000000588	adprs (ENSHCOG00000000307)	ENSHCOG00000009938	ENSHCOG00000009990	ENSHCOG00000010014	ENSHCOG00000010038	utp25 (ENSHCOG00000010052)	ENSHCOG00000010061	TMEM151B (ENSHCOG00000010065)	mtres1 (ENSHCOG00000010074)	bend3 (ENSHCOG00000010084)	pdss2 (ENSHCOG00000010113)	sobpa (ENSHCOG00000010221)	rock2a (ENSHCOG00000010292) ##30
Tiger tail seahorse	MODERN SPECIES	101								twist2 (ENSHCOG00000009431)	ENSHCOG00000009467	asb1 (ENSHCOG00000009477)	traf3ip1 (ENSHCOG00000000295)	traf3ip1 (ENSHCOG00000009566)	ADARB1 (ENSHCOG00000009597)	ENSHCOG00000009626	zgc:162780 (ENSHCOG00000009643)	ENSHCOG00000009661 #22	ube2f (ENSHCOG00000009696)	ramp1 (ENSHCOG00000009720)	ccnt2a (ENSHCOG00000009728)	acmsd (ENSHCOG00000009748)	tmem163a (ENSHCOG00000009774)	ENSHCOG00000009781	RALB (ENSHCOG00000009793)	ENSHCOG00000009874	ENSHCOG00000009898
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000153168.A	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Fugu	DUPLICATION
Fugu	MODERN SPECIES	11	ENSTRUG00000029938	ppp2r5eb (ENSTRUG00000003840)	KCNH5 (ENSTRUG00000004743)	gphb5 (ENSTRUG00000005808)	ENSTRUG00000024118	ENSTRUG00000030125	esr2b (ENSTRUG00000006761)	brf1a (ENSTRUG00000008740)	BTBD6 (ENSTRUG00000008962)	zfyve21 (ENSTRUG00000021037) #16	ENSTRUG00000026919	klc1a (ENSTRUG00000008089) #18	coa8 (ENSTRUG00000008026) #20	bag5 (ENSTRUG00000021724) #19	trmt61a (ENSTRUG00000007942) #21	ckba (ENSTRUG00000007663) #22	ENSTRUG00000030920	ckba (ENSTRUG00000032894) #22	ENSTRUG00000031698	mark3a (ENSTRUG00000006908) #23	eif5 (ENSTRUG00000006600) #25	vps29 (ENSTRUG00000021451)	ENSTRUG00000029891	ENSTRUG00000006434 #27	ENSTRUG00000024591 #28	ENSTRUG00000029360	ENSTRUG00000027669	ENSTRUG00000030284	si:dkey-177p2.6 (ENSTRUG00000020492)	cdca4 (ENSTRUG00000022645)	ahsa1b (ENSTRUG00000022592)
Fugu	MODERN SPECIES	11	KCNH5 (ENSTRUG00000004743)	gphb5 (ENSTRUG00000005808)	ENSTRUG00000024118	ENSTRUG00000030125	esr2b (ENSTRUG00000006761)	brf1a (ENSTRUG00000008740)	BTBD6 (ENSTRUG00000008962)	zfyve21 (ENSTRUG00000021037) #16	ENSTRUG00000026919	klc1a (ENSTRUG00000008089) #18	coa8 (ENSTRUG00000008026) #20	bag5 (ENSTRUG00000021724) #19	trmt61a (ENSTRUG00000007942) #21	ckba (ENSTRUG00000007663) #22	ENSTRUG00000030920	ckba (ENSTRUG00000032894) #22	ENSTRUG00000031698	mark3a (ENSTRUG00000006908) #23	eif5 (ENSTRUG00000006600) #25	vps29 (ENSTRUG00000021451)	ENSTRUG00000029891	ENSTRUG00000006434 #27	ENSTRUG00000024591 #28	ENSTRUG00000029360	ENSTRUG00000027669	ENSTRUG00000030284	si:dkey-177p2.6 (ENSTRUG00000020492)	cdca4 (ENSTRUG00000022645)	ahsa1b (ENSTRUG00000022592)	ENSTRUG00000023154	ENSTRUG00000005612
Tetraodon	MODERN SPECIES	1	ppp2r5eb (ENSTNIG00000012378)	KCNH5 (ENSTNIG00000012379)	gphb5 (ENSTNIG00000012380)	ENSTNIG00000012381	esr2b (ENSTNIG00000012382)	ENSTNIG00000012383	ENSTNIG00000012384	ENSTNIG00000000736	BTBD6 (ENSTNIG00000012385)	ENSTNIG00000012386	zfyve21 (ENSTNIG00000012387) #16	klc1a (ENSTNIG00000012388) #18	coa8 (ENSTNIG00000012389) #20	bag5 (ENSTNIG00000012390) #19	trmt61a (ENSTNIG00000012391) #21	ckba (ENSTNIG00000012392) #22	mark3a (ENSTNIG00000012393) #23	eif5 (ENSTNIG00000012394) #25	vps29 (ENSTNIG00000012395)	ENSTNIG00000000514 #27	exoc3l4 (ENSTNIG00000000979) #28	cdca4 (ENSTNIG00000012396)	ahsa1b (ENSTNIG00000012397)	ENSTNIG00000012398	pgrmc2 (ENSTNIG00000012399)	asmt2 (ENSTNIG00000012400)	jade1 (ENSTNIG00000012401)	nsd2 (ENSTNIG00000012402)	letm1 (ENSTNIG00000012403)	fgfr3 (ENSTNIG00000012404)	foxi2 (ENSTNIG00000003048)
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Ballan wrasse	MODERN SPECIES	340													coa8 (ENSLBEG00000004763) #20	bag5 (ENSLBEG00000004794) #19	trmt61a (ENSLBEG00000004835) #21	ckba (ENSLBEG00000004858) #22	mark3a (ENSLBEG00000004943) #23	eif5 (ENSLBEG00000005184) #25	vps29 (ENSLBEG00000005230)	ENSLBEG00000005258 #27	exoc3l4 (ENSLBEG00000005355) #28	ENSLBEG00000005429	ENSLBEG00000005452	ENSLBEG00000005491	si:dkey-177p2.6 (ENSLBEG00000005553)	cdca4 (ENSLBEG00000005583)	ahsa1b (ENSLBEG00000005598)	ENSLBEG00000005633	ENSLBEG00000005655	pgrmc2 (ENSLBEG00000005698)	asmt2 (ENSLBEG00000005718)
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234877	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234877	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Gilthead seabream	MODERN SPECIES	7	ENSSAUG00010020475	ENSSAUG00010020464	ahsa1b (ENSSAUG00010020460)	cdca4 (ENSSAUG00010020459)	si:dkey-177p2.6 (ENSSAUG00010020457)	ENSSAUG00010020454	ENSSAUG00010020452	exoc3l4 (ENSSAUG00010020446) #28	ENSSAUG00010020422 #27	zfyve21 (ENSSAUG00010020416) #16	klc1a (ENSSAUG00010020199) #18	coa8 (ENSSAUG00010020197) #20	bag5 (ENSSAUG00010020196) #19	trmt61a (ENSSAUG00010020193) #21	ENSSAUG00010020190	ckba (ENSSAUG00010020187) #22	mark3a (ENSSAUG00010016257) #23	eif5 (ENSSAUG00010016191) #25	vps29 (ENSSAUG00010016123)	ENSSAUG00010016114	KCNH5 (ENSSAUG00010016076)	gphb5 (ENSSAUG00010016071)	ENSSAUG00010016067	esr2b (ENSSAUG00010016030)	ENSSAUG00010014238	ENSSAUG00010014201	ENSSAUG00010014200	ENSSAUG00010014199	ENSSAUG00010014198	ENSSAUG00010014197	ENSSAUG00010014196
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
European seabass	MODERN SPECIES	2	gphb5 (ENSDLAG00005033670)	ENSDLAG00005027738	esr2b (ENSDLAG00005010895)	ENSDLAG00005009198	ENSDLAG00005027269	ENSDLAG00005032036	ENSDLAG00005009101	ENSDLAG00005033978	ENSDLAG00005029934	ZFYVE21 (ENSDLAG00005032163) #16	ENSDLAG00005005912	klc1a (ENSDLAG00005008793) #18	bag5 (ENSDLAG00005026601) #19	ENSDLAG00005034500	trmt61a (ENSDLAG00005008771) #21	ckba (ENSDLAG00005008698) #22	ENSDLAG00005008767	mark3a (ENSDLAG00005004906) #23	EIF5 (ENSDLAG00005004663) #25	ENSDLAG00005004580	ENSDLAG00005033435	ENSDLAG00005018914 #27	ENSDLAG00005004281 #28	ENSDLAG00005004265	ENSDLAG00005032534	ENSDLAG00005027228	ENSDLAG00005028608	ENSDLAG00005004153	ENSDLAG00005024642	pgrmc2 (ENSDLAG00005033902)	asmt2 (ENSDLAG00005024622)
Large yellow croaker	MODERN SPECIES	495	pacc1 (ENSLCRG00005007836)	nenf (ENSLCRG00005007837)	ezra (ENSLCRG00005007838)	ENSLCRG00005007839	MTARC2 (ENSLCRG00005007840)	HHIPL2 (ENSLCRG00005007842)	wdr32 (ENSLCRG00005007848)	CPXM1 (ENSLCRG00005007857)	ENSLCRG00005007913	ube2d3 (ENSLCRG00005007924)	zfyve21 (ENSLCRG00005008399) #16	klc1a (ENSLCRG00005008412) #18	coa8 (ENSLCRG00005008739) #20	bag5 (ENSLCRG00005008740) #19	trmt61a (ENSLCRG00005008741) #21	ckba (ENSLCRG00005008742) #22	ENSLCRG00005008747	MARK3 (ENSLCRG00005008748) #23	eif5 (ENSLCRG00005008753) #25	ENSLCRG00005008756	vps29 (ENSLCRG00005008758)	ENSLCRG00005008763	ENSLCRG00005008764 #27	exoc3l4 (ENSLCRG00005008774) #28	ENSLCRG00005008782	si:dkey-177p2.6 (ENSLCRG00005008783)	cdca4 (ENSLCRG00005008784)	ahsa1b (ENSLCRG00005008785)	ENSLCRG00005008787	ENSLCRG00005008789	pgrmc2 (ENSLCRG00005008958)
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234877	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000180336	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247	ENSGT00940000157429.d	ENSGT00950000183167.a.a
Stickleback	MODERN SPECIES	15	emx1 (ENSGACG00000004860)	noto (ENSGACG00000004856)	CDC25B (ENSGACG00000004851)	ap5s1 (ENSGACG00000004849)	ENSGACG00000004847	BTBD6 (ENSGACG00000004835)	brf1a (ENSGACG00000004823)	ENSGACG00000004818	ENSGACG00000004815	ENSGACG00000004813	zfyve21 (ENSGACG00000004809) #16	klc1a (ENSGACG00000004792) #18	coa8 (ENSGACG00000004787) #20	bag5 (ENSGACG00000004786) #19	trmt61a (ENSGACG00000004779) #21	ckba (ENSGACG00000004758) #22	mark3a (ENSGACG00000004742) #23	eif5 (ENSGACG00000004730) #25	vps29 (ENSGACG00000004700)	ENSGACG00000004696	ENSGACG00000004692 #27	ENSGACG00000004683 #27	exoc3l4 (ENSGACG00000004676) #28	ENSGACG00000004674	ENSGACG00000004669	si:dkey-177p2.6 (ENSGACG00000004666)	cdca4 (ENSGACG00000004663)	ahsa1b (ENSGACG00000004625)	ENSGACG00000004609	pgrmc2 (ENSGACG00000004602)	ENSGACG00000004598
Lumpfish	MODERN SPECIES	14	ENSCLMG00005006841	ENSCLMG00005006842	ENSCLMG00005006843	ENSCLMG00005006844	esr2b (ENSCLMG00005006859)	ENSCLMG00005007567	ENSCLMG00005007906	ENSCLMG00005007907	brf1a (ENSCLMG00005007908)	BTBD6 (ENSCLMG00005007909)	zfyve21 (ENSCLMG00005007913) #16	klc1a (ENSCLMG00005007934) #18	coa8 (ENSCLMG00005008058) #20	bag5 (ENSCLMG00005008059) #19	trmt61a (ENSCLMG00005008060) #21	ckba (ENSCLMG00005008062) #22	ENSCLMG00005008177	mark3a (ENSCLMG00005008182) #23	ENSCLMG00005008892	eif5 (ENSCLMG00005008893) #25	vps29 (ENSCLMG00005008894)	exoc3l4 (ENSCLMG00005008896) #28	ENSCLMG00005008897	ENSCLMG00005008898	ENSCLMG00005008916	ENSCLMG00005008921	cdca4 (ENSCLMG00005008922)	ahsa1b (ENSCLMG00005008924)	ENSCLMG00005008928	pgrmc2 (ENSCLMG00005008930)	asmt2 (ENSCLMG00005008932)
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234877	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000160366	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247
Channel bull blenny	MODERN SPECIES	14									brf1a (ENSCGOG00000019939)	BTBD6 (ENSCGOG00000019943)	zfyve21 (ENSCGOG00000019949) #16	klc1a (ENSCGOG00000020000) #18	coa8 (ENSCGOG00000020378) #20	bag5 (ENSCGOG00000020382) #19	trmt61a (ENSCGOG00000020384) #21	ckba (ENSCGOG00000020388) #22	ENSCGOG00000020425	mark3a (ENSCGOG00000020496) #23	eif5 (ENSCGOG00000021717) #25	vps29 (ENSCGOG00000021863)	TNFAIP2 (ENSCGOG00000021878) #27	ENSCGOG00000021883	ENSCGOG00000021885	ENSCGOG00000021887	cdca4 (ENSCGOG00000021889)	ahsa1b (ENSCGOG00000021892)	ENSCGOG00000021917	ENSCGOG00000021921	pgrmc2 (ENSCGOG00000021936)	asmt2 (ENSCGOG00000021940)	jade1 (ENSCGOG00000021944)
Pike perch	MODERN SPECIES	53	alkbh1 (ENSSLUG00000017767)	APOB (ENSSLUG00000017723)	ldah (ENSSLUG00000017698)	gphb5 (ENSSLUG00000017692)	ENSSLUG00000017678	esr2b (ENSSLUG00000017280)	ENSSLUG00000013338	BTBD6 (ENSSLUG00000013209)	brf1a (ENSSLUG00000013202)	zfyve21 (ENSSLUG00000013198) #16	klc1a (ENSSLUG00000012286) #18	coa8 (ENSSLUG00000012227) #20	bag5 (ENSSLUG00000012224) #19	trmt61a (ENSSLUG00000012219) #21	ENSSLUG00000012214	ckba (ENSSLUG00000012192) #22	mark3a (ENSSLUG00000009221) #23	eif5 (ENSSLUG00000008983) #25	vps29 (ENSSLUG00000008952)	TNFAIP2 (ENSSLUG00000022625) #27	exoc3l4 (ENSSLUG00000022607) #28	ENSSLUG00000022602	ENSSLUG00000022591	si:dkey-177p2.6 (ENSSLUG00000022587)	cdca4 (ENSSLUG00000022582)	ahsa1b (ENSSLUG00000022566)	ENSSLUG00000022557	ENSSLUG00000022516	ENSSLUG00000022505	pgrmc2 (ENSSLUG00000022500)	asmt2 (ENSSLUG00000022489)
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Zig-zag eel	MODERN SPECIES	14	ppp2r5eb (ENSMAMG00000000046)	KCNH5 (ENSMAMG00000000047)	gphb5 (ENSMAMG00000000048)	ENSMAMG00000000049	ENSMAMG00000000050	ENSMAMG00000000052	esr2b (ENSMAMG00000000053)	ENSMAMG00000000054	ENSMAMG00000000056	ENSMAMG00000000057	ENSMAMG00000000058 #16	klc1a (ENSMAMG00000000059) #18	coa8 (ENSMAMG00000000060) #20	bag5 (ENSMAMG00000000061) #19	trmt61a (ENSMAMG00000000062) #21	ckba (ENSMAMG00000000063) #22	ENSMAMG00000000064	mark3a (ENSMAMG00000000065) #23	EIF5 (ENSMAMG00000000066) #25	ENSMAMG00000000067	ENSMAMG00000000068 #27	ENSMAMG00000000072 #28	ENSMAMG00000025617	ENSMAMG00000000073	ENSMAMG00000000075	ENSMAMG00000000074	ENSMAMG00000000076	ENSMAMG00000000077	ENSMAMG00000000078	ENSMAMG00000026494	ENSMAMG00000000080
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Siamese fighting fish	MODERN SPECIES	12	rbbp4 (ENSBSLG00000024844)	zbtb8os (ENSBSLG00000024811)	khdrbs1a (ENSBSLG00000024799)	tmem39b (ENSBSLG00000024792)	ccdc28b (ENSBSLG00000024789)	ENSBSLG00000024785	KLHL28 (ENSBSLG00000024777)	pank2 (ENSBSLG00000024767)	ENSBSLG00000024759	ENSBSLG00000024753	zfyve21 (ENSBSLG00000024728) #16	klc1a (ENSBSLG00000024546) #18	coa8 (ENSBSLG00000024527) #20	bag5 (ENSBSLG00000024519) #19	trmt61a (ENSBSLG00000024498) #21	ckba (ENSBSLG00000024470) #22	mark3a (ENSBSLG00000023410) #23	eif5 (ENSBSLG00000023334) #25	vps29 (ENSBSLG00000023314)	ENSBSLG00000023308	ENSBSLG00000023285 #27	ENSBSLG00000023276 #27	exoc3l4 (ENSBSLG00000023256) #28	ENSBSLG00000023246	ENSBSLG00000023237	si:dkey-177p2.6 (ENSBSLG00000023234)	cdca4 (ENSBSLG00000023230)	ahsa1b (ENSBSLG00000023153)	ENSBSLG00000023136	LARP1B (ENSBSLG00000022931)	pgrmc2 (ENSBSLG00000022883)
Climbing perch	MODERN SPECIES	13	ppp2r5eb (ENSATEG00000016738)	KCNH5 (ENSATEG00000016794)	gphb5 (ENSATEG00000016850)	ENSATEG00000030096	ENSATEG00000016899	esr2b (ENSATEG00000016954)	ENSATEG00000017008	ENSATEG00000017067	ENSATEG00000017087	ENSATEG00000017116 #16	KLC1 (ENSATEG00000025754) #18	klc1a (ENSATEG00000017146) #18	coa8 (ENSATEG00000029055) #20	bag5 (ENSATEG00000017272) #19	trmt61a (ENSATEG00000017286) #21	ckba (ENSATEG00000017305) #22	ENSATEG00000017323	mark3a (ENSATEG00000017350) #23	EIF5 (ENSATEG00000017486) #25	ENSATEG00000017542	ENSATEG00000017616 #27	ENSATEG00000017628 #28	ENSATEG00000017664	ENSATEG00000017681	ENSATEG00000017717	ENSATEG00000017781	ENSATEG00000017795	ENSATEG00000017803	ENSATEG00000028173	ENSATEG00000017849	pgrmc2 (ENSATEG00000017889)
Carangaria	ANCESTRAL SPECIES	10	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b.t	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Turbot	MODERN SPECIES	8	KCNH5 (ENSSMAG00000025884)	gphb5 (ENSSMAG00000028083)	ENSSMAG00000035911	gphb5 (ENSSMAG00000031569)	ENSSMAG00000003011	esr2b (ENSSMAG00000003150)	ENSSMAG00000005467	ENSSMAG00000005498	ENSSMAG00000005510	ENSSMAG00000034872	ENSSMAG00000005543 #16	klc1a (ENSSMAG00000005563) #18	coa8 (ENSSMAG00000005663) #20	bag5 (ENSSMAG00000005674) #19	trmt61a (ENSSMAG00000005682) #21	ckba (ENSSMAG00000005705) #22	ENSSMAG00000006025	mark3a (ENSSMAG00000005737) #23	EIF5 (ENSSMAG00000006036) #25	ENSSMAG00000006072	ENSSMAG00000006093 #27	ENSSMAG00000024708	ENSSMAG00000006250	ENSSMAG00000034451	ENSSMAG00000006294	ENSSMAG00000006347	pgrmc2 (ENSSMAG00000006418)	asmt2 (ENSSMAG00000006433)	jade1 (ENSSMAG00000006505)	nsd2 (ENSSMAG00000006581)	letm1 (ENSSMAG00000006721)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES		ENSCSEG00000012914	dtd2 (ENSCSEG00000012924)	nubpl (ENSCSEG00000012929)	ARHGAP5 (ENSCSEG00000012946)	AKAP6 (ENSCSEG00000012957)	NPAS3 (ENSCSEG00000012970)	egln3 (ENSCSEG00000012988)	ENSCSEG00000013002	brf1a (ENSCSEG00000013067)	BTBD6 (ENSCSEG00000013091)	zfyve21 (ENSCSEG00000013100) #16	klc1a (ENSCSEG00000013113) #18	coa8 (ENSCSEG00000013144) #20	bag5 (ENSCSEG00000013150) #19	trmt61a (ENSCSEG00000013165) #21	ckba (ENSCSEG00000013174) #22	ENSCSEG00000013191	mark3a (ENSCSEG00000013207) #23	eif5 (ENSCSEG00000013347) #25	vps29 (ENSCSEG00000013380)	ENSCSEG00000013393 #27	exoc3l4 (ENSCSEG00000013401) #28	ENSCSEG00000013406	ENSCSEG00000013411	si:dkey-177p2.6 (ENSCSEG00000013418)	cdca4 (ENSCSEG00000013426)	ahsa1b (ENSCSEG00000013438)	ENSCSEG00000013509	ENSCSEG00000013519	pgrmc2 (ENSCSEG00000013533)	jade1 (ENSCSEG00000013541)
Tongue sole	MODERN SPECIES	2	gxylt2 (ENSCSEG00000007848)	ppp4r2b (ENSCSEG00000007869)	pdzrn3b (ENSCSEG00000007883)	ENSCSEG00000007911	ENSCSEG00000007957	ENSCSEG00000008067	cntn4 (ENSCSEG00000008117)	arl6ip5a (ENSCSEG00000008154)	trnt1 (ENSCSEG00000008157)	ENSCSEG00000008178	ENSCSEG00000008213	mon1a (ENSCSEG00000008235)	grm6b (ENSCSEG00000008243)	ENSCSEG00000008263	SRPK3 (ENSCSEG00000008071)	CKB (ENSCSEG00000008082) #22	wnt4 (ENSCSEG00000008092)	fbxo2 (ENSCSEG00000008134)	svbp (ENSCSEG00000008141)	ITGA5 (ENSCSEG00000008169)	ENSCSEG00000008387	cdc42 (ENSCSEG00000008405)	snrpe (ENSCSEG00000008431)	sox13 (ENSCSEG00000008443)	CHST15 (ENSCSEG00000008472)	ENSCSEG00000008476	slc41a1 (ENSCSEG00000008494)	ENSCSEG00000008511	etnk2 (ENSCSEG00000008524)	zbtb49 (ENSCSEG00000008540)	lyar (ENSCSEG00000008548)
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Barramundi perch	MODERN SPECIES	11								ENSLCAG00010005082	ENSLCAG00010005079	ENSLCAG00010005077 #16	klc1a (ENSLCAG00010005052) #18	coa8 (ENSLCAG00010005039) #20	bag5 (ENSLCAG00010005026) #19	trmt61a (ENSLCAG00010005023) #21	ENSLCAG00010005020	ckba (ENSLCAG00010004985) #22	mark3a (ENSLCAG00010004972) #23
Seriola	ANCESTRAL SPECIES	3	ENSGT00730000111179.b	ENSGT01090000261882	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT01100000263513.a.a.b.b.b.a.a.a.c	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Greater amberjack	MODERN SPECIES	62	gphb5 (ENSSDUG00000005428)	ENSSDUG00000005418	ENSSDUG00000005403	ENSSDUG00000005366	esr2b (ENSSDUG00000005328)	ENSSDUG00000005167	BTBD6 (ENSSDUG00000005135)	brf1a (ENSSDUG00000005014)	ENSSDUG00000004960	zfyve21 (ENSSDUG00000004918) #16	klc1a (ENSSDUG00000004886) #18	bag5 (ENSSDUG00000004877) #19	coa8 (ENSSDUG00000004864) #20	trmt61a (ENSSDUG00000004840) #21	ENSSDUG00000004832	ckba (ENSSDUG00000004767) #22	mark3a (ENSSDUG00000004553) #23	eif5 (ENSSDUG00000004467) #25	vps29 (ENSSDUG00000004442)	ENSSDUG00000004423 #27	exoc3l4 (ENSSDUG00000004344) #28	ENSSDUG00000004323	ENSSDUG00000004293	si:dkey-177p2.6 (ENSSDUG00000004283)	cdca4 (ENSSDUG00000004270)	ahsa1b (ENSSDUG00000004251)	ENSSDUG00000004235	ENSSDUG00000004182	pgrmc2 (ENSSDUG00000004171)	asmt2 (ENSSDUG00000004145)	jade1 (ENSSDUG00000004118)
Yellowtail amberjack	MODERN SPECIES	2905						esr2b (ENSSLDG00000009163)	ENSSLDG00000013869	brf1a (ENSSLDG00000013937)	BTBD6 (ENSSLDG00000013981)	ENSSLDG00000014003	zfyve21 (ENSSLDG00000014052) #16	klc1a (ENSSLDG00000014091) #18	coa8 (ENSSLDG00000014128) #20	bag5 (ENSSLDG00000014145) #19	trmt61a (ENSSLDG00000014160) #21	ckba (ENSSLDG00000014183) #22	ENSSLDG00000014211	mark3a (ENSSLDG00000014225) #23	eif5 (ENSSLDG00000014272) #25	vps29 (ENSSLDG00000014317)	ENSSLDG00000014336 #27	exoc3l4 (ENSSLDG00000014442) #28	ENSSLDG00000014497	ENSSLDG00000014518	si:dkey-177p2.6 (ENSSLDG00000014543)	cdca4 (ENSSLDG00000014555)	ahsa1b (ENSSLDG00000014565)	ENSSLDG00000014592	LARP1B (ENSSLDG00000014613)	pgrmc2 (ENSSLDG00000014643)	asmt2 (ENSSLDG00000014667)
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000157666	ENSGT00940000155671.y.a	ENSGT00730000111137	ENSGT00390000002448	ENSGT00390000008195	ENSGT00940000158622	ENSGT00410000026259	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00390000004172	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Oryzias_b	ANCESTRAL SPECIES	39								ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00940000177368	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00390000004172.c	ENSGT00940000168728	ENSGT00940000163336	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Indian medaka	MODERN SPECIES			MYT1L (ENSOMEG00000003446)	eipr1 (ENSOMEG00000003467)	trappc12 (ENSOMEG00000003492)	adi1 (ENSOMEG00000003523)	ENSOMEG00000003544	ENSOMEG00000003562	ENSOMEG00000003587	ENSOMEG00000003684	ENSOMEG00000003705	ENSOMEG00000003712	ENSOMEG00000003724	bag5 (ENSOMEG00000003732) #19	trmt61a (ENSOMEG00000003744) #21	ENSOMEG00000003756	ckba (ENSOMEG00000003808) #22	mark3a (ENSOMEG00000003926) #23	eif5 (ENSOMEG00000003991) #25	vps29 (ENSOMEG00000004024)	ENSOMEG00000004048 #27	exoc3l4 (ENSOMEG00000004068) #28	rsph3 (ENSOMEG00000004121)	ENSOMEG00000004131	ENSOMEG00000004144	si:dkey-177p2.6 (ENSOMEG00000004154)	cdca4 (ENSOMEG00000004162)	ahsa1b (ENSOMEG00000004175)	ENSOMEG00000004210	pgrmc2 (ENSOMEG00000004227)	asmt2 (ENSOMEG00000004237)	jade1 (ENSOMEG00000004266)
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000020706	marcksl1b (ENSOJAG00000020743)	hdac1 (ENSOJAG00000020757)	ENSOJAG00000020824	EIF3I (ENSOJAG00000020851)	txlna (ENSOJAG00000020891)	KPNA6 (ENSOJAG00000020946)	ENSOJAG00000020956	brf1a (ENSOJAG00000020971)	BTBD6 (ENSOJAG00000020980)	zfyve21 (ENSOJAG00000020987) #16	klc1a (ENSOJAG00000021028) #18	coa8 (ENSOJAG00000021323) #20	bag5 (ENSOJAG00000021330) #19	trmt61a (ENSOJAG00000021339) #21	ckba (ENSOJAG00000021350) #22	mark3a (ENSOJAG00000021402) #23	eif5 (ENSOJAG00000021791) #25	vps29 (ENSOJAG00000021844)	ENSOJAG00000001624 #27	exoc3l4 (ENSOJAG00000001638) #28	ENSOJAG00000001650	ENSOJAG00000001663	ENSOJAG00000001679	ENSOJAG00000001696	ENSOJAG00000001707	ENSOJAG00000001730	cdca4 (ENSOJAG00000001740)	ahsa1b (ENSOJAG00000001755)	ENSOJAG00000001780	ENSOJAG00000001859
Oryzias_a	ANCESTRAL SPECIES	29	ENSGT00940000157666	ENSGT00940000155671.y.a	ENSGT00730000111137	ENSGT00390000002448	ENSGT00390000008195	ENSGT00940000158622	ENSGT00410000026259	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000155555 #18	ENSGT00940000159639 #16	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00390000004172	ENSGT00940000168728	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Chinese medaka	MODERN SPECIES	185													trmt61a (ENSOSIG00000011466) #21	ENSOSIG00000011464	mark3a (ENSOSIG00000011462) #23	ckba (ENSOSIG00000011460) #22	eif5 (ENSOSIG00000011451) #25	vps29 (ENSOSIG00000011291)	ENSOSIG00000011274 #27	rsph3 (ENSOSIG00000011271)	ENSOSIG00000011269
Japanese Medaka HdrR	MODERN SPECIES	14	MYT1L (ENSORLG00000017852)	eipr1 (ENSORLG00000017857)	trappc12 (ENSORLG00000017859)	ENSORLG00000025112	adi1 (ENSORLG00000017862)	ENSORLG00000017864	ENSORLG00000027471	ENSORLG00000017877	ENSORLG00000017887	BTBD6 (ENSORLG00000017891)	klc1a (ENSORLG00000017895) #18	zfyve21 (ENSORLG00000017899) #16	coa8 (ENSORLG00000017900) #20	bag5 (ENSORLG00000027890) #19	trmt61a (ENSORLG00000017903) #21	ckba (ENSORLG00000017908) #22	mark3a (ENSORLG00000017921) #23	ENSORLG00000029319	eif5 (ENSORLG00000017930) #25	vps29 (ENSORLG00000017935)	ENSORLG00000017937 #27	exoc3l4 (ENSORLG00000027040) #28	rsph3 (ENSORLG00000017939)	ENSORLG00000024013	ENSORLG00000021797	ENSORLG00000030539	ENSORLG00000027786	si:dkey-177p2.6 (ENSORLG00000021887)	cdca4 (ENSORLG00000017941)	ahsa1b (ENSORLG00000017948)	ENSORLG00000023447
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a.c	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b.a #23	ENSGT00940000177368	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Aplocheiloidei	ANCESTRAL SPECIES	109	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a.c	ENSGT00940000156540.a.d	ENSGT00730000111179.b	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28
Mangrove rivulus	MODERN SPECIES	9	irf2bpl (ENSKMAG00000018382)	ENSKMAG00000018354	timm9 (ENSKMAG00000018340)	arid4a (ENSKMAG00000018271)	psma3 (ENSKMAG00000018247)	snx6 (ENSKMAG00000018216)	cfl2 (ENSKMAG00000018199)	ENSKMAG00000018181	BTBD6 (ENSKMAG00000018157)	ENSKMAG00000018137	zfyve21 (ENSKMAG00000018120) #16	klc1a (ENSKMAG00000018084) #18	coa8 (ENSKMAG00000018040) #20	bag5 (ENSKMAG00000018016) #19	trmt61a (ENSKMAG00000018005) #21	ckba (ENSKMAG00000017979) #22	mark3a (ENSKMAG00000017897) #23	eif5 (ENSKMAG00000017862) #25	vps29 (ENSKMAG00000017841)	ENSKMAG00000017818 #27	ARL3 (ENSKMAG00000017791)	wbp1 (ENSKMAG00000017760)	lman2la (ENSKMAG00000017724)	MTFP1 (ENSKMAG00000017702)	MED13L (ENSKMAG00000017631)	ENSKMAG00000017611	tbx3a (ENSKMAG00000017582)	tbx5a (ENSKMAG00000017563)	ddx54 (ENSKMAG00000017520)	rab14 (ENSKMAG00000017487)	ABL1 (ENSKMAG00000017451)
Turquoise killifish	MODERN SPECIES	1625	cln3 (ENSNFUG00015006130)	Nfu_g_1_018518 (ENSNFUG00015006158)	DUS1L (ENSNFUG00015006186)	SLC16A3 (ENSNFUG00015006210)	csnk1db (ENSNFUG00015006224)	ENGASE (ENSNFUG00015006307)	SCPEP1 (ENSNFUG00015006385)	ENSNFUG00015006845	ENSNFUG00015006846	rab11fip4a (ENSNFUG00015006859)	IGF2BP1 (ENSNFUG00015006905)	ENSNFUG00015007324	TNFAIP2 (ENSNFUG00015007326) #27	exoc3l4 (ENSNFUG00015007334) #28	TRMT61A (ENSNFUG00015007342) #21	ckba (ENSNFUG00015007362) #22	mark3a (ENSNFUG00015007649) #23	ENSNFUG00015010915	eif5 (ENSNFUG00015010938) #25	VPS29 (ENSNFUG00015010997)	bag5 (ENSNFUG00015011072) #19	coa8 (ENSNFUG00015011091) #20	ENSNFUG00015011106	KLC1A (ENSNFUG00015011178) #18	ZFYVE21 (ENSNFUG00015011340) #16	ENSNFUG00015011553	ENSNFUG00015013298	brf1a (ENSNFUG00015013317)	BTBD6A (ENSNFUG00015013348)	DTD2 (ENSNFUG00015013355)	ENSNFUG00015013358
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a	ENSGT00960000187998	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b.a #23	ENSGT00940000177368	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000166602.A	ENSGT00550000074824	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b.a #23	ENSGT00940000177368	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
Poecilia	ANCESTRAL SPECIES	44									ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b.a #23	ENSGT00940000177368	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744
NAME_6	ANCESTRAL SPECIES	142	ENSGT00390000006916.d.b	ENSGT00550000074824	ENSGT00390000004927	ENSGT00940000157393	ENSGT00940000155879	ENSGT00940000156269.a.a	ENSGT00940000164564.f.a	ENSGT00940000163520.A.a.a.a.a.a.a.g.b	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b.a #23	ENSGT00940000177368	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744.d
Sailfin molly	MODERN SPECIES	385												klc1a (ENSPLAG00000013695) #18	coa8 (ENSPLAG00000013630) #20	bag5 (ENSPLAG00000013615) #19	trmt61a (ENSPLAG00000013604) #21	ckba (ENSPLAG00000013587) #22	ENSPLAG00000013569	mark3a (ENSPLAG00000013552) #23	eif5 (ENSPLAG00000013444) #25	vps29 (ENSPLAG00000013410)	ENSPLAG00000013397 #27	ENSPLAG00000013381	ENSPLAG00000013368
Amazon molly	MODERN SPECIES	614	srp54 (ENSPFOG00000008870)	ENSPFOG00000008813	lrrc57 (ENSPFOG00000008772)	tyro3 (ENSPFOG00000008469)	ENSPFOG00000008431	ENSPFOG00000008067	ENSPFOG00000008032	ENSPFOG00000007931	BTBD6 (ENSPFOG00000007869)	brf1a (ENSPFOG00000007864)	zfyve21 (ENSPFOG00000007862) #16	klc1a (ENSPFOG00000007320) #18	coa8 (ENSPFOG00000023033) #20	bag5 (ENSPFOG00000007281) #19	trmt61a (ENSPFOG00000007249) #21	ckba (ENSPFOG00000007129) #22	MARK3 (ENSPFOG00000022835) #23
Guppy	MODERN SPECIES	453	ENSPREG00000004534	lrrc57 (ENSPREG00000004552)	tyro3 (ENSPREG00000004587)	ENSPREG00000004628	ENSPREG00000004673	ENSPREG00000004695	ENSPREG00000004729	ENSPREG00000004803	brf1a (ENSPREG00000005076)	BTBD6 (ENSPREG00000005120)	ENSPREG00000005140	klc1a (ENSPREG00000005178) #18	coa8 (ENSPREG00000005258) #20	bag5 (ENSPREG00000005296) #19	trmt61a (ENSPREG00000005313) #21	ckba (ENSPREG00000005342) #22	mark3a (ENSPREG00000005436) #23	ENSPREG00000005677	eif5 (ENSPREG00000005696) #25	vps29 (ENSPREG00000005729)	ENSPREG00000005761 #27	exoc3l4 (ENSPREG00000005791) #28	ENSPREG00000005825	ENSPREG00000005850	ahsa1b (ENSPREG00000005888)	ENSPREG00000005914	cdca4 (ENSPREG00000005921)	ENSPREG00000005946	ENSPREG00000005955	ENSPREG00000005980	pgrmc2 (ENSPREG00000006009)
Platyfish	MODERN SPECIES	10	loxl3b (ENSXMAG00000018497)	pank2 (ENSXMAG00000018493)	ENSXMAG00000022985	ENSXMAG00000021583 #23	ENSXMAG00000029472 #23	ENSXMAG00000018489	ENSXMAG00000007459	BTBD6 (ENSXMAG00000027382)	brf1a (ENSXMAG00000018476)	zfyve21 (ENSXMAG00000025110) #16	klc1a (ENSXMAG00000018455) #18	coa8 (ENSXMAG00000018452) #20	bag5 (ENSXMAG00000018450) #19	trmt61a (ENSXMAG00000018447) #21	ENSXMAG00000028459	ckba (ENSXMAG00000018437) #22	ENSXMAG00000023192 #23	ENSXMAG00000029096 #36	tecpr2 (ENSXMAG00000018423) #34	ankrd9 (ENSXMAG00000018422)	rcor1 (ENSXMAG00000018414) #33	traf3 (ENSXMAG00000018391)	mipol1 (ENSXMAG00000018388)	ENSXMAG00000018285	ENSXMAG00000022693	sec23a (ENSXMAG00000018352)	srp54 (ENSXMAG00000018315)	ENSXMAG00000027421	lrrc57 (ENSXMAG00000013948)	tyro3 (ENSXMAG00000004939)	ENSXMAG00000027901
NAME_4	ANCESTRAL SPECIES	104	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a	ENSGT00960000187998	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000177368	ENSGT00940000154862.x.b.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Sheepshead minnow	MODERN SPECIES	514	yipf6 (ENSCVAG00000017714)	ENSCVAG00000017735	ENSCVAG00000017768	dtd2 (ENSCVAG00000017787)	snapc1b (ENSCVAG00000017835)	ENSCVAG00000017867	ENSCVAG00000018003	BTBD6 (ENSCVAG00000018074)	ENSCVAG00000018110	zfyve21 (ENSCVAG00000018197) #16	klc1a (ENSCVAG00000018320) #18	coa8 (ENSCVAG00000018335) #20	bag5 (ENSCVAG00000018365) #19	trmt61a (ENSCVAG00000018399) #21	ENSCVAG00000018435	ckba (ENSCVAG00000018499) #22	mark3a (ENSCVAG00000018949) #23	eif5 (ENSCVAG00000019134) #25	vps29 (ENSCVAG00000019203)	LGALS8 (ENSCVAG00000019242)	ZDHHC14 (ENSCVAG00000019403)	ENSCVAG00000000796	ARID1B (ENSCVAG00000019547)
Mummichog	MODERN SPECIES	2356			ENSFHEG00000011758	esr2b (ENSFHEG00000011692)	ENSFHEG00000011619	ENSFHEG00000011203	ppp2r5eb (ENSFHEG00000011187)	ENSFHEG00000011104	ENSFHEG00000011095	BTBD6 (ENSFHEG00000011072)	zfyve21 (ENSFHEG00000011042) #16	klc1a (ENSFHEG00000010970) #18	coa8 (ENSFHEG00000010832) #20	bag5 (ENSFHEG00000010822) #19	trmt61a (ENSFHEG00000010814) #21	ckb (ENSFHEG00000010790) #22	ENSFHEG00000010749	mark3a (ENSFHEG00000010724) #23	eif5 (ENSFHEG00000010524) #25	vps29 (ENSFHEG00000010482)	ENSFHEG00000010441 #27	exoc3l4 (ENSFHEG00000010420) #28	ENSFHEG00000010410	ENSFHEG00000010398	si:dkey-177p2.6 (ENSFHEG00000010364)	cdca4 (ENSFHEG00000010349)	ahsa1b (ENSFHEG00000000236)	ENSFHEG00000010280	LARP1B (ENSFHEG00000010264)	pgrmc2 (ENSFHEG00000010241)	asmt2 (ENSFHEG00000010232)
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Cichlidae	ANCESTRAL SPECIES	37	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Nile tilapia	MODERN SPECIES	10	SGPP1 (ENSONIG00000043214)	wdr89 (ENSONIG00000020830)	ppp2r5eb (ENSONIG00000001752)	KCNH5 (ENSONIG00000001748)	gphb5 (ENSONIG00000001746)	ENSONIG00000036811	esr2 (ENSONIG00000001710)	ENSONIG00000001676	brf1a (ENSONIG00000001665)	BTBD6 (ENSONIG00000001672)	zfyve21 (ENSONIG00000012439) #16	klc1a (ENSONIG00000012429) #18	coa8 (ENSONIG00000012426) #20	bag5 (ENSONIG00000012424) #19	trmt61a (ENSONIG00000012420) #21	ckba (ENSONIG00000012417) #22	mark3a (ENSONIG00000012410) #23	eif5 (ENSONIG00000012407) #25	vps29 (ENSONIG00000012406)	ENSONIG00000042609	ENSONIG00000012403 #27	ENSONIG00000012400 #27	exoc3l4 (ENSONIG00000012398) #28	ENSONIG00000034348	ENSONIG00000040212	si:dkey-177p2.6 (ENSONIG00000012393)	cdca4 (ENSONIG00000021035)	ahsa1b (ENSONIG00000012392)	ENSONIG00000030302	ENSONIG00000012386	pgrmc2 (ENSONIG00000033876)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234613.b.a.a.c.a.j.a.b #27	ENSGT01030000234613.b.a.a.c.a.j.a.a #27	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n
Haplochromini	ANCESTRAL SPECIES	42	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234613.b.a.a.c.a.j.a.b #27	ENSGT01030000234613.b.a.a.c.a.j.a.a #27	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Burton s mouthbrooder	MODERN SPECIES	674								BTBD6 (ENSHBUG00000022370)	brf1a (ENSHBUG00000022502)	zfyve21 (ENSHBUG00000000694) #16	klc1a (ENSHBUG00000022665) #18	coa8 (ENSHBUG00000022686) #20	bag5 (ENSHBUG00000022695) #19	trmt61a (ENSHBUG00000022709) #21	ENSHBUG00000022714	ckba (ENSHBUG00000022749) #22	mark3a (ENSHBUG00000023278) #23	eif5 (ENSHBUG00000001036) #25	vps29 (ENSHBUG00000023395)	exoc3l4 (ENSHBUG00000023409) #28
Haplochromini_A	ANCESTRAL SPECIES	44	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234613.b.a.a.c.a.j.a.b #27	ENSGT01030000234613.b.a.a.c.a.j.a.a #27	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Haplochromini_B	ANCESTRAL SPECIES	55	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a.i.a.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT01030000234613.b.a.a.c.a.j.b #27	ENSGT01030000234613.b.a.a.c.a.j.a.b #27	ENSGT01030000234613.b.a.a.c.a.j.a.a #27	ENSGT00940000168728	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Zebra mbuna	MODERN SPECIES	1101	KCNH5 (ENSMZEG00005001383)	gphb5 (ENSMZEG00005001409)	ENSMZEG00005001424	ENSMZEG00005001446	ENSMZEG00005001544	ENSMZEG00005001558	ENSMZEG00005001573	ENSMZEG00005001584	brf1a (ENSMZEG00005001620)	BTBD6 (ENSMZEG00005001741)	zfyve21 (ENSMZEG00005001775) #16	klc1a (ENSMZEG00005001810) #18	coa8 (ENSMZEG00005001873) #20	bag5 (ENSMZEG00005001887) #19	trmt61a (ENSMZEG00005001914) #21	ckba (ENSMZEG00005001937) #22	mark3a (ENSMZEG00005001972) #23	eif5 (ENSMZEG00005002102) #25	vps29 (ENSMZEG00005002143)	ENSMZEG00005002154	ENSMZEG00005002169 #27	ENSMZEG00005002188 #27	ENSMZEG00005002245 #27	exoc3l4 (ENSMZEG00005002293) #28	ENSMZEG00005002328 #27	ENSMZEG00005002356 #27	ENSMZEG00005002389 #27	ENSMZEG00005002412	ENSMZEG00005002435	ENSMZEG00005002450	si:dkey-177p2.6 (ENSMZEG00005002460)
Eastern happy	MODERN SPECIES	10	ENSACLG00000009148	ENSACLG00000009153	ENSACLG00000009174	esr2b (ENSACLG00000009392)	ENSACLG00000009406	ENSACLG00000009410	ENSACLG00000009419	brf1a (ENSACLG00000010410)	BTBD6 (ENSACLG00000010608)	zfyve21 (ENSACLG00000010624) #16	klc1a (ENSACLG00000010654) #18	ENSACLG00000010725	coa8 (ENSACLG00000010731) #20	bag5 (ENSACLG00000010740) #19	trmt61a (ENSACLG00000010779) #21	ckba (ENSACLG00000010809) #22	mark3a (ENSACLG00000010884) #23	eif5 (ENSACLG00000011164) #25	vps29 (ENSACLG00000011186)	ENSACLG00000011198	ENSACLG00000011438 #27	ENSACLG00000011544 #27	ENSACLG00000011547 #27	exoc3l4 (ENSACLG00000011561) #28	ENSACLG00000011579 #27	ENSACLG00000011602 #27	ENSACLG00000011639	ENSACLG00000011799	ENSACLG00000011815	si:dkey-177p2.6 (ENSACLG00000011833)	cdca4 (ENSACLG00000011837)
P. nyererei	MODERN SPECIES	1450																ENSPNYG00000003034 #22
Lyretail cichlid	MODERN SPECIES	299	wdr89 (ENSNBRG00000022904)	ppp2r5eb (ENSNBRG00000022915)	KCNH5 (ENSNBRG00000022940)	gphb5 (ENSNBRG00000022958)	ENSNBRG00000022964	ENSNBRG00000022976	esr2b (ENSNBRG00000023185)	ENSNBRG00000023586	brf1a (ENSNBRG00000023643)	BTBD6 (ENSNBRG00000023655)	zfyve21 (ENSNBRG00000023661) #16	klc1a (ENSNBRG00000023670) #18	coa8 (ENSNBRG00000023679) #20	bag5 (ENSNBRG00000023682) #19	trmt61a (ENSNBRG00000023686) #21	ckba (ENSNBRG00000023695) #22	ENSNBRG00000023703	ENSNBRG00000023706 #23	ENSNBRG00000023708 #23	ENSNBRG00000023712 #23	eif5 (ENSNBRG00000023720) #25	vps29 (ENSNBRG00000023742)	ENSNBRG00000023748 #27	ENSNBRG00000023757 #27	exoc3l4 (ENSNBRG00000023763) #28	ENSNBRG00000023772 #27	ENSNBRG00000023779 #27	ENSNBRG00000023783	ENSNBRG00000023808	si:dkey-177p2.6 (ENSNBRG00000023817)	cdca4 (ENSNBRG00000023822)
Midas cichlid	MODERN SPECIES	1272							ENSACIG00000023797	ENSACIG00000023800	BTBD6 (ENSACIG00000023803)	ENSACIG00000023806	zfyve21 (ENSACIG00000023807) #16	klc1a (ENSACIG00000023809) #18	coa8 (ENSACIG00000023814) #20	bag5 (ENSACIG00000023816) #19	trmt61a (ENSACIG00000023818) #21	ckba (ENSACIG00000023820) #22	ENSACIG00000023824	mark3a (ENSACIG00000023826) #23	eif5 (ENSACIG00000023833) #25	vps29 (ENSACIG00000023840)	ENSACIG00000023845 #27	ENSACIG00000023851 #27	ENSACIG00000023856	ENSACIG00000023870	si:dkey-177p2.6 (ENSACIG00000023872)	cdca4 (ENSACIG00000023875)	ahsa1b (ENSACIG00000023880)	ENSACIG00000023884	ENSACIG00000023890	pgrmc2 (ENSACIG00000023899)	asmt2 (ENSACIG00000023903)
Pomacentridae	ANCESTRAL SPECIES	22	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.c	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Pomacentridae_A	ANCESTRAL SPECIES	31	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.c	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228
Amphiprion	ANCESTRAL SPECIES	27	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.c	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718	ENSGT00940000159744	ENSGT00940000166228	ENSGT00940000158247
Clown anemonefish	MODERN SPECIES	2552												ENSAOCG00000016946 #18	coa8 (ENSAOCG00000016952) #20	bag5 (ENSAOCG00000016964) #19	trmt61a (ENSAOCG00000016986) #21	ckba (ENSAOCG00000017039) #22	mark3a (ENSAOCG00000017087) #23
Orange clownfish	MODERN SPECIES	9	gphb5 (ENSAPEG00000002851)	ENSAPEG00000002883	ENSAPEG00000002922	ENSAPEG00000002946	ENSAPEG00000002963	esr2b (ENSAPEG00000003028)	ENSAPEG00000003105	ENSAPEG00000003239	BTBD6 (ENSAPEG00000003260)	ENSAPEG00000003309	zfyve21 (ENSAPEG00000003335) #16	klc1a (ENSAPEG00000003369) #18	coa8 (ENSAPEG00000003403) #20	bag5 (ENSAPEG00000003511) #19	trmt61a (ENSAPEG00000003541) #21	ckba (ENSAPEG00000003565) #22	mark3a (ENSAPEG00000003620) #23	eif5 (ENSAPEG00000003714) #25	vps29 (ENSAPEG00000003774)	TNFAIP2 (ENSAPEG00000003816) #27	exoc3l4 (ENSAPEG00000003835) #28	ENSAPEG00000003871	ENSAPEG00000003897	ENSAPEG00000003968	si:dkey-177p2.6 (ENSAPEG00000004001)	cdca4 (ENSAPEG00000004021)	ahsa1b (ENSAPEG00000004042)	ENSAPEG00000004088	ENSAPEG00000004126	pgrmc2 (ENSAPEG00000004176)	asmt2 (ENSAPEG00000004192)
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	3265																CKB (ENSAPOG00000022462) #22	ENSAPOG00000022476 #23
Spiny chromis	MODERN SPECIES	3750															ENSAPOG00000017837 #21	ckba (ENSAPOG00000000694) #22
Spiny chromis	MODERN SPECIES	431								BTBD6 (ENSAPOG00000004372)	brf1a (ENSAPOG00000004381)	ENSAPOG00000000104	zfyve21 (ENSAPOG00000004425) #16	klc1a (ENSAPOG00000004510) #18	coa8 (ENSAPOG00000004551) #20	bag5 (ENSAPOG00000000113) #19	trmt61a (ENSAPOG00000004599) #21	ckba (ENSAPOG00000004672) #22
Bicolor damselfish	MODERN SPECIES	355						ENSSPAG00000017094	ENSSPAG00000017104	ENSSPAG00000017116	BTBD6 (ENSSPAG00000017133)	ENSSPAG00000017149	zfyve21 (ENSSPAG00000017163) #16	klc1a (ENSSPAG00000017184) #18	coa8 (ENSSPAG00000017240) #20	bag5 (ENSSPAG00000017253) #19	trmt61a (ENSSPAG00000017259) #21	ckba (ENSSPAG00000017281) #22	mark3a (ENSSPAG00000017350) #23	eif5 (ENSSPAG00000017515) #25	vps29 (ENSSPAG00000017555)	ENSSPAG00000017576 #27	exoc3l4 (ENSSPAG00000017613) #28	ENSSPAG00000017641	ENSSPAG00000017663	ahsa1b (ENSSPAG00000017685)	si:dkey-177p2.6 (ENSSPAG00000017708)	cdca4 (ENSSPAG00000017726)	ENSSPAG00000017738	ENSSPAG00000017772	pgrmc2 (ENSSPAG00000017885)	asmt2 (ENSSPAG00000017896)	jade1 (ENSSPAG00000017957)
Cod	MODERN SPECIES	18	SGPP1 (ENSGMOG00000030796)	ENSGMOG00000028601	wdr89 (ENSGMOG00000022613)	ppp2r5eb (ENSGMOG00000009392)	KCNH5 (ENSGMOG00000027666)	gphb5 (ENSGMOG00000027209)	ENSGMOG00000032367	esr2b (ENSGMOG00000034890)	ENSGMOG00000018260	ENSGMOG00000018967	ENSGMOG00000035589 #16	klc1a (ENSGMOG00000000849) #18	coa8 (ENSGMOG00000002615) #20	bag5 (ENSGMOG00000028560) #19	trmt61a (ENSGMOG00000011395) #21	ckba (ENSGMOG00000003005) #22	ENSGMOG00000028956	mark3a (ENSGMOG00000010044) #23	EIF5 (ENSGMOG00000010039) #25	ENSGMOG00000010032	ENSGMOG00000036688	ENSGMOG00000034326	ENSGMOG00000023641	ENSGMOG00000017277	ENSGMOG00000028630	ENSGMOG00000008146 #35	ENSGMOG00000034587 #36	tecpr2 (ENSGMOG00000014581) #34	ankrd9 (ENSGMOG00000030360)	rcor1 (ENSGMOG00000014282) #33	traf3 (ENSGMOG00000014251)
Protacanthopterygii	ANCESTRAL SPECIES	92	ENSGT00940000158836.a.a	ENSGT00390000006996	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000238132	ENSGT00940000154862.x.b #23	ENSGT00390000016478.f #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000155428.b	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a	ENSGT00550000074922	ENSGT00390000010738	ENSGT00940000156598.d
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	631							ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000159639.d #16	ENSGT00940000155555.c.a #18	ENSGT00940000158888.n #19	ENSGT00940000154239.a.d #21	ENSGT00950000182772.A.a.b.`b.a.i #22	ENSGT00940000154862.x.b.i #23	ENSGT00390000016478.f.b #25	ENSGT01030000234613.b.a.a.c.a.n #27	ENSGT01030000234613.b.a.b.e #28	ENSGT00940000164834.a.a
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000156982	ENSGT00940000158220.bb	ENSGT00940000156774.n.a	ENSGT00940000179359.a.b.a.b	ENSGT00940000164866.c	ENSGT01100000263556.a.a.q.d.r.b	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000159639.d #16	ENSGT00940000155555.c.a #18	ENSGT00940000158888.n #19	ENSGT00940000154239.a.d #21	ENSGT00950000182772.A.a.b.`b.a.i #22	ENSGT00940000154862.x.b.i #23	ENSGT00390000016478.f.b #25	ENSGT01030000234613.b.a.a.c.a.n #27	ENSGT01030000234613.b.a.b.e #28	ENSGT00940000164834.a.a	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n.b	ENSGT00940000155428.b.d	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT01000000220171	ENSGT00390000005826.a.b.h.a.b	ENSGT00550000074922.l	ENSGT00390000010738
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00940000156774.n.a	ENSGT00940000179359.a.b.a.b	ENSGT00940000164866.c	ENSGT00940000165332.B	ENSGT00390000006996	ENSGT01030000234620.a.b.a.j	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000159639.d #16	ENSGT00940000155555.c.a #18	ENSGT00940000158888.n #19	ENSGT00940000154239.a.d #21	ENSGT00950000182772.A.a.b.`b.a.i #22	ENSGT00940000154862.x.b.i #23	ENSGT00390000016478.f.b #25	ENSGT01030000234613.b.a.a.c.a.n #27	ENSGT01030000234613.b.a.b.e #28	ENSGT00940000164834.a.a	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n.b	ENSGT00940000155428.b.d	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT01000000220171	ENSGT00390000005826.a.b.h.a.b	ENSGT00550000074922.l	ENSGT00390000010738
Rainbow trout	MODERN SPECIES	17	ENSOMYG00000025628	wdr89 (ENSOMYG00000053248)	ENSOMYG00000075959	ENSOMYG00000074847	ppp2r5eb (ENSOMYG00000026037)	gphb5 (ENSOMYG00000026346)	ENSOMYG00000027283	ENSOMYG00000030990	ENSOMYG00000031659	ENSOMYG00000069616	ENSOMYG00000020798	ZFYVE21 (ENSOMYG00000031706) #16	klc1a (ENSOMYG00000032038) #18	bag5 (ENSOMYG00000032582) #19	trmt61a (ENSOMYG00000032592) #21	ckba (ENSOMYG00000032605) #22	ENSOMYG00000032631	mark3a (ENSOMYG00000032737) #23	if5 (ENSOMYG00000032972) #25	ENSOMYG00000033025 #27	ENSOMYG00000033053 #28	ENSOMYG00000048291	ENSOMYG00000033078	ENSOMYG00000033086	ENSOMYG00000051000	ENSOMYG00000055460	PLCB1 (ENSOMYG00000033338)	ENSOMYG00000033526	hao1 (ENSOMYG00000033541)	ENSOMYG00000059970	ENSOMYG00000047855
Oncorhynchus_a	ANCESTRAL SPECIES	177					ENSGT01030000234620.a.b.a.j	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000159639.d #16	ENSGT00940000155555.c.a #18	ENSGT00940000158888.n #19	ENSGT00940000154239.a.d #21	ENSGT00990000209766.a	ENSGT00950000182772.A.a.b.`b.a.i #22	ENSGT00940000154862.x.b.i #23	ENSGT01030000234613.b.a.a.c.a.n #27	ENSGT01030000234613.b.a.b.e #28	ENSGT00940000164834.a.a
Coho salmon	MODERN SPECIES	5	ENSOKIG00005020811	ENSOKIG00005020805	ENSOKIG00005020797	ENSOKIG00005020792	ppp2r5eb (ENSOKIG00005020584)	gphb5 (ENSOKIG00005020555)	ESR2 (ENSOKIG00005017780)	ENSOKIG00005017063	BTBD6 (ENSOKIG00005016965)	ENSOKIG00005016908	zfyve21 (ENSOKIG00005016825) #16	klc1a (ENSOKIG00005016566) #18	bag5 (ENSOKIG00005016518) #19	trmt61a (ENSOKIG00005016507) #21	ENSOKIG00005016505	ckba (ENSOKIG00005016475) #22	mark3a (ENSOKIG00005016189) #23	EIF5 (ENSOKIG00005016088) #25	ENSOKIG00005016057 #27	ENSOKIG00005016037 #28	ENSOKIG00005016015	ENSOKIG00005016011	ENSOKIG00005016003	CDCA4 (ENSOKIG00005015998)	ENSOKIG00005015993	PLCB1 (ENSOKIG00005015567)	ENSOKIG00005015510	hao1 (ENSOKIG00005015450)	ENSOKIG00005015424	napba (ENSOKIG00005015345)	cdc5l (ENSOKIG00005015194)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	42						ENSOTSG00005039745	ENSOTSG00005039744	ENSOTSG00005039729	BTBD6 (ENSOTSG00005039696)	brf1a (ENSOTSG00005039639)	zfyve21 (ENSOTSG00005039627) #16	klc1a (ENSOTSG00005039266) #18	bag5 (ENSOTSG00005039229) #19	trmt61a (ENSOTSG00005039223) #21	ENSOTSG00005039219	ckba (ENSOTSG00005039214) #22	mark3a (ENSOTSG00005037697) #23	ENSOTSG00005037689 #27	ENSOTSG00005037685 #28	ENSOTSG00005037684	CDCA4 (ENSOTSG00005037683)	PLCB1 (ENSOTSG00005037010)	ENSOTSG00005037006	hao1 (ENSOTSG00005037005)	ENSOTSG00005037004	ENSOTSG00005036879	cdc5l (ENSOTSG00005036846)	supt3h (ENSOTSG00005036806)	ENSOTSG00005036780	clic5a (ENSOTSG00005036779)	ENSOTSG00005036776
Chinook salmon	MODERN SPECIES	2934	abcf2a (ENSOTSG00005037441)	faim2a (ENSOTSG00005037419)	afg3l2 (ENSOTSG00005037260)	ppp2r5eb (ENSOTSG00005037148)	gphb5 (ENSOTSG00005037140)	ENSOTSG00005037130	ENSOTSG00005036241	ENSOTSG00005036208	BTBD6 (ENSOTSG00005036207)	brf1a (ENSOTSG00005036171)	zfyve21 (ENSOTSG00005036164) #16	klc1a (ENSOTSG00005035976) #18	bag5 (ENSOTSG00005035964) #19	trmt61a (ENSOTSG00005035961) #21	ENSOTSG00005035959	ckba (ENSOTSG00005035955) #22	mark3a (ENSOTSG00005034676) #23	eif5 (ENSOTSG00005034654) #25	ENSOTSG00005034647 #27	ENSOTSG00005034646 #28	ENSOTSG00005034644	CDCA4 (ENSOTSG00005034643)	PLCB1 (ENSOTSG00005033596)	ENSOTSG00005033590	hao1 (ENSOTSG00005033582)	ENSOTSG00005033581	napba (ENSOTSG00005033560)	cdc5l (ENSOTSG00005033501)	supt3h (ENSOTSG00005033498)	ENSOTSG00005033473	clic5a (ENSOTSG00005033471)
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000164866.c	ENSGT00940000165332.B	ENSGT00390000006996	ENSGT01030000234620.a.b.a.j	ENSGT00940000156540.a.g	ENSGT00730000111179.b.b	ENSGT00940000156116.A.b	ENSGT00940000164854.a.d	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000159639.d #16	ENSGT00940000155555.c.a #18	ENSGT00940000158888.n #19	ENSGT00940000154239.a.d #21	ENSGT00990000209766.a	ENSGT00950000182772.A.a.b.`b.a.i #22	ENSGT00940000154862.x.b.i #23	ENSGT00390000016478.f.b #25	ENSGT01030000234613.b.a.a.c.a.n #27	ENSGT01030000234613.b.a.b.e #28	ENSGT00940000164834.a.a	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n.b	ENSGT00940000155428.b.d	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT01000000220171	ENSGT00390000005826.a.b.h.a.b	ENSGT00550000074922.l	ENSGT00390000010738
River trout	MODERN SPECIES	17	ENSSTUG00000042880	ENSSTUG00000042872	esr2b (ENSSTUG00000040315)	KCNH5 (ENSSTUG00000040255)	gphb5 (ENSSTUG00000040246)	esr2b (ENSSTUG00000039695)	esr2b (ENSSTUG00000038959)	ENSSTUG00000038217	BTBD6 (ENSSTUG00000038144)	brf1a (ENSSTUG00000037992)	zfyve21 (ENSSTUG00000037880) #16	klc1a (ENSSTUG00000036630) #18	bag5 (ENSSTUG00000036583) #19	trmt61a (ENSSTUG00000036571) #21	ENSSTUG00000036567	ckba (ENSSTUG00000036465) #22	mark3a (ENSSTUG00000034966) #23	eif5 (ENSSTUG00000034892) #25	ENSSTUG00000034858 #27	ENSSTUG00000034820 #28	ENSSTUG00000034806	ENSSTUG00000034795	ENSSTUG00000034775	CDCA4 (ENSSTUG00000034767)	PLCB1 (ENSSTUG00000034334)	ENSSTUG00000034283	ENSSTUG00000034273	ENSSTUG00000034266	hao1 (ENSSTUG00000034183)	ENSSTUG00000034159	ENSSTUG00000033995
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000086992	wdr89 (ENSSSAG00000102703)	2a5e (ENSSSAG00000044391)	KCNH5 (ENSSSAG00000088169)	gphb5 (ENSSSAG00000053262)	ENSSSAG00000053270	ENSSSAG00000100471	ENSSSAG00000086126	ENSSSAG00000057905	ENSSSAG00000058245	ZFYVE21 (ENSSSAG00000003314) #16	klc1a (ENSSSAG00000058753) #18	BAG5 (ENSSSAG00000121302) #19	trm61 (ENSSSAG00000070099) #21	MARK3 (ENSSSAG00000070224) #23	ckba (ENSSSAG00000070110) #22	EIF5 (ENSSSAG00000002230) #25	ENSSSAG00000002276 #27	ENSSSAG00000002298 #28	ENSSSAG00000116630	ENSSSAG00000100817	ENSSSAG00000108826	ENSSSAG00000103947	ENSSSAG00000002416	ENSSSAG00000093293	ENSSSAG00000105039	cdc5l (ENSSSAG00000002525)	ENSSSAG00000002562	ENSSSAG00000002568	clic5a (ENSSSAG00000002585)	ENSSSAG00000002612
Huchen	MODERN SPECIES	635									ENSHHUG00000036781	brf1a (ENSHHUG00000037069)	BTBD6 (ENSHHUG00000037096)	zfyve21 (ENSHHUG00000037127) #16	klc1a (ENSHHUG00000037137) #18	bag5 (ENSHHUG00000037338) #19	trmt61a (ENSHHUG00000037342) #21	ckba (ENSHHUG00000037377) #22	ENSHHUG00000037475	mark3a (ENSHHUG00000037478) #23	eif5 (ENSHHUG00000037562) #25	ENSHHUG00000037599 #27	ENSHHUG00000037627 #28	ENSHHUG00000037639
Salmoninae	ANCESTRAL SPECIES	119	ENSGT00940000177588	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c #16	ENSGT00940000155555.c.b #18	ENSGT00390000008212 #20	ENSGT00940000158888.m #19	ENSGT00940000154239.a.c #21	ENSGT00950000182772.A.a.b.`b.a.j #22	ENSGT01030000238132	ENSGT00940000154862.x.b.j #23	ENSGT00390000016478.f.a #25	ENSGT01030000234613.b.a.a.c.a.m #27	ENSGT01030000234613.b.a.b.f #28	ENSGT00940000168728	ENSGT00940000154902.tb.c.a	ENSGT00940000180336	ENSGT00530000063867.a.b.n	ENSGT00940000155428.b.c	ENSGT00390000001607.i.a	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000177588	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c #16	ENSGT00940000155555.c.b #18	ENSGT00390000008212 #20	ENSGT00940000158888.m #19	ENSGT00940000154239.a.c #21	ENSGT00950000182772.A.a.b.`b.a.j #22	ENSGT01030000238132	ENSGT00940000154862.x.b.j #23	ENSGT00390000016478.f.a #25	ENSGT01030000234613.b.a.a.c.a.m #27	ENSGT01030000234613.b.a.b.f #28	ENSGT00940000164834.a.b	ENSGT00940000160366.h	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00390000018691.c	ENSGT00940000159673	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c #16	ENSGT00940000155555.c.b #18	ENSGT00390000008212 #20	ENSGT00940000158888.m #19	ENSGT00950000182772.A.a.b.`b.a.j #22	ENSGT00940000154862.x.b.j #23	ENSGT00390000016478.f.a #25	ENSGT01030000234613.b.a.a.c.a.m #27	ENSGT01030000234613.b.a.b.f #28	ENSGT00940000164834.a.b	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k	ENSGT00940000158831.g	ENSGT01070000253766.C.o.b.a
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000031815	ENSOMYG00000031747	ENSOMYG00000031734	ENSOMYG00000031702	erb2 (ENSOMYG00000031569)	ENSOMYG00000030906	ENSOMYG00000030632	ENSOMYG00000063699	ENSOMYG00000066345	ENSOMYG00000049828	ENSOMYG00000030602 #16	klc1a (ENSOMYG00000030541) #18	ENSOMYG00000069844	COA8 (ENSOMYG00000030327) #20	bag5 (ENSOMYG00000030316) #19	kcrt (ENSOMYG00000030175) #22	MARK3 (ENSOMYG00000029487) #23	EIF5 (ENSOMYG00000029194) #25	ENSOMYG00000029063 #27	ENSOMYG00000029028 #28	ENSOMYG00000029016	ENSOMYG00000070183	ENSOMYG00000029014	ENSOMYG00000026567	ENSOMYG00000066175	crls1 (ENSOMYG00000026231)	ENSOMYG00000026137	napba (ENSOMYG00000025353)	ENSOMYG00000025128	ENSOMYG00000023442	ENSOMYG00000073610
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00390000018691.c	ENSGT00940000159673	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.g	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b	ENSGT00940000159639.c #16	ENSGT00940000155555.c.b #18	ENSGT00390000008212 #20	ENSGT00940000158888.m #19	ENSGT00950000182772.A.a.b.`b.a.j #22	ENSGT00940000154862.x.b.j #23	ENSGT00390000016478.f.a #25	ENSGT01030000234613.b.a.a.c.a.m #27	ENSGT01030000234613.b.a.b.f #28	ENSGT00940000164834.a.b	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.j	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k	ENSGT00940000158831.g	ENSGT01070000253766.C.o.b.a
Coho salmon	MODERN SPECIES	27	ppp2r5eb (ENSOKIG00005039119)	KCNH5 (ENSOKIG00005038916)	GPHB5 (ENSOKIG00005038895)	ENSOKIG00005038862	ENSOKIG00005038739	esr2b (ENSOKIG00005038442)	ENSOKIG00005037377	ENSOKIG00005037242	ENSOKIG00005037217	ENSOKIG00005037202	ZFYVE21 (ENSOKIG00005037153) #16	klc1a (ENSOKIG00005037085) #18	coa8 (ENSOKIG00005037038) #20	bag5 (ENSOKIG00005037016) #19	ENSOKIG00005037001	CKB (ENSOKIG00005036610) #22	mark3a (ENSOKIG00005033781) #23	EIF5 (ENSOKIG00005033507) #25	ENSOKIG00005033440 #27	ENSOKIG00005033420 #28	ENSOKIG00005033408	ENSOKIG00005033401	CDCA4 (ENSOKIG00005033374)	ENSOKIG00005028487	crls1 (ENSOKIG00005028204)	MCM8 (ENSOKIG00005027665)	napba (ENSOKIG00005027509)	ENSOKIG00005027475	CDC5L (ENSOKIG00005027411)	enpp4 (ENSOKIG00005027390)	XKR6 (ENSOKIG00005027378)
Chinook salmon	MODERN SPECIES	2	snapc1b (ENSOTSG00005028543)	SYT16 (ENSOTSG00005028541)	SGPP1 (ENSOTSG00005028538)	ppp2r5eb (ENSOTSG00005026521)	KCNH5 (ENSOTSG00005026508)	GPHB5 (ENSOTSG00005026507)	ENSOTSG00005026505	esr2b (ENSOTSG00005026502)	ENSOTSG00005025807	BTBD6 (ENSOTSG00005025749)	ENSOTSG00005025744	zfyve21 (ENSOTSG00005025736) #16	klc1a (ENSOTSG00005025724) #18	coa8 (ENSOTSG00005025713) #20	bag5 (ENSOTSG00005025709) #19	CKB (ENSOTSG00005025706) #22	MARK3 (ENSOTSG00005021731) #23	eif5 (ENSOTSG00005021643) #25	ENSOTSG00005021637 #27	ENSOTSG00005021634 #28	ENSOTSG00005021629	CDCA4 (ENSOTSG00005021625)	ENSOTSG00005021621	crls1 (ENSOTSG00005021620)	MCM8 (ENSOTSG00005021354)	napba (ENSOTSG00005021342)	ENSOTSG00005021341	cdc5l (ENSOTSG00005019834)	enpp4 (ENSOTSG00005019829)	ENSOTSG00005019766	kiaa1109 (ENSOTSG00005019724)
Salmo	ANCESTRAL SPECIES	8	ENSGT00940000177588	ENSGT00940000158836.a.a	ENSGT01030000234620.a.b.a.i	ENSGT00940000156540.a.h	ENSGT00730000111179.b.a	ENSGT00940000154656.ob.a	ENSGT00940000156116.A.a	ENSGT00940000164854.a.c	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000159639.c #16	ENSGT00940000155555.c.b #18	ENSGT00390000008212 #20	ENSGT00940000158888.m #19	ENSGT00940000154239.a.c #21	ENSGT00950000182772.A.a.b.`b.a.j #22	ENSGT01030000238132	ENSGT00940000154862.x.b.j #23	ENSGT00390000016478.f.a #25	ENSGT01030000234613.b.a.a.c.a.m #27	ENSGT01030000234613.b.a.b.f #28	ENSGT00940000164834.a.b	ENSGT00940000160366.h	ENSGT00940000154902.tb.c.b	ENSGT00530000063867.a.b.n.a	ENSGT00940000155428.b.c	ENSGT00390000001607.i.a	ENSGT01090000260080.a	ENSGT00390000005826.a.b.h.a.a	ENSGT00950000182986.a.b.a.h	ENSGT00550000074922.k
Atlantic salmon	MODERN SPECIES		snapc1b (ENSSSAG00000001552)	SYT16 (ENSSSAG00000001557)	ENSSSAG00000105087	ppp2r5eb (ENSSSAG00000001667)	ENSSSAG00000106684	ENSSSAG00000002567	ENSSSAG00000100502	esr2b (ENSSSAG00000002641)	ENSSSAG00000121425	ENSSSAG00000003295	ENSSSAG00000093721	ZFYVE21 (ENSSSAG00000058274) #16	KLC1 (ENSSSAG00000003364) #18	bag5 (ENSSSAG00000003451) #19	ENSSSAG00000111799	ckb (ENSSSAG00000003466) #22	MARK3 (ENSSSAG00000003552) #23	ENSSSAG00000003482	EIF5 (ENSSSAG00000004307) #25	tnfaip2b (ENSSSAG00000004364) #27	exoc3l4 (ENSSSAG00000004378) #28	LBH (ENSSSAG00000004392)	ENSSSAG00000101310	ENSSSAG00000103441	ENSSSAG00000004570	ENSSSAG00000005519	ENSSSAG00000113076	ENSSSAG00000005749	ENSSSAG00000005830	enpp4 (ENSSSAG00000006881)	ENSSSAG00000006892
River trout	MODERN SPECIES	26	KCNH5 (ENSSTUG00000045684)	GPHB5 (ENSSTUG00000045670)	ENSSTUG00000045655	ENSSTUG00000045598	esr2b (ENSSTUG00000045577)	ENSSTUG00000045109	ENSSTUG00000045078	BTBD6 (ENSSTUG00000045054)	brf1a (ENSSTUG00000044935)	ENSSTUG00000044923	klc1a (ENSSTUG00000043936) #18	coa8 (ENSSTUG00000043911) #20	bag5 (ENSSTUG00000043899) #19	trmt61a (ENSSTUG00000043870) #21	ENSSTUG00000043864	ckba (ENSSTUG00000043847) #22	mark3a (ENSSTUG00000042605) #23	eif5 (ENSSTUG00000042464) #25	ENSSTUG00000042366 #27	ENSSTUG00000042307 #28	ENSSTUG00000042292	ENSSTUG00000042277	CDCA4 (ENSSTUG00000042266)	ENSSTUG00000040119	ENSSTUG00000040046	crls1 (ENSSTUG00000040021)	MCM8 (ENSSTUG00000039950)	napba (ENSSTUG00000039410)	ENSSTUG00000039394	ENSSTUG00000039392	cdc5l (ENSSTUG00000038926)
Huchen	MODERN SPECIES	77	ENSHHUG00000045203	ENSHHUG00000045193	ENSHHUG00000045180	esr2b (ENSHHUG00000045048)	ENSHHUG00000044687	ENSHHUG00000044686	BTBD6 (ENSHHUG00000044679)	ENSHHUG00000044675	ENSHHUG00000044674	zfyve21 (ENSHHUG00000044659) #16	klc1a (ENSHHUG00000044404) #18	coa8 (ENSHHUG00000044392) #20	bag5 (ENSHHUG00000044390) #19	trmt61a (ENSHHUG00000044382) #21	ENSHHUG00000044379	ckba (ENSHHUG00000043873) #22	mark3a (ENSHHUG00000043683) #23	eif5 (ENSHHUG00000043661) #25	ENSHHUG00000043603 #27	ENSHHUG00000043594 #28	ENSHHUG00000043591	ENSHHUG00000043587	CDCA4 (ENSHHUG00000043584)	ENSHHUG00000043279	crls1 (ENSHHUG00000043273)	MCM8 (ENSHHUG00000043197)	napba (ENSHHUG00000043129)	ENSHHUG00000043125	cdc5l (ENSHHUG00000043011)	CLIC5 (ENSHHUG00000043007)	enpp4 (ENSHHUG00000043005)
Northern pike	MODERN SPECIES	14	wdr89 (ENSELUG00000011779)	ppp2r5eb (ENSELUG00000011926)	KCNH5 (ENSELUG00000011998)	gphb5 (ENSELUG00000012016)	ENSELUG00000012111	esr2b (ENSELUG00000012140)	ENSELUG00000012210	BTBD6 (ENSELUG00000012265)	brf1a (ENSELUG00000012342)	zfyve21 (ENSELUG00000012406) #16	klc1a (ENSELUG00000012511) #18	apopt1 (ENSELUG00000012568) #20	bag5 (ENSELUG00000024943) #19	ENSELUG00000030755	trmt61a (ENSELUG00000012611) #21	ckb (ENSELUG00000000464) #22	ENSELUG00000032851	mark3a (ENSELUG00000012906) #23	eif5 (ENSELUG00000013021) #25	ENSELUG00000013091 #27	exoc3l4 (ENSELUG00000013122) #28	ENSELUG00000034002	CDCA4 (ENSELUG00000013163)	PLCB1 (ENSELUG00000013241)	tmx4 (ENSELUG00000013273)	hao1 (ENSELUG00000013296)	crls1 (ENSELUG00000013306)	MCM8 (ENSELUG00000013379)	napba (ENSELUG00000013424)	cdc5l (ENSELUG00000013492)	supt3h (ENSELUG00000013548)
Otomorpha	ANCESTRAL SPECIES	242	ENSGT00940000154656.ob.a.q	ENSGT00940000176966	ENSGT00940000154656.ob.a.r	ENSGT00940000156116.A	ENSGT00940000164854.b.e	ENSGT00960000187998	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366
Otophysi	ANCESTRAL SPECIES	12				ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b.g #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000153463.a.c.b #15	ENSGT01060000248685	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb	ENSGT00940000165916.e.b	ENSGT00390000018691.d
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00940000154935.d	ENSGT00940000155303.l	ENSGT00940000156914.o.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b.g #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	22	si:dkey-33c12.4 (ENSIPUG00000005998)	ENSIPUG00000005947	zgc:123321 (ENSIPUG00000005913)	ENSIPUG00000005905	pomk (ENSIPUG00000005893)	dcaf10 (ENSIPUG00000005878)	ENSIPUG00000005860	cpxm1 (ENSIPUG00000005829)	ENSIPUG00000005804	SEMA4G (ENSIPUG00000005749)	lzts2 (ENSIPUG00000005737)	ENSIPUG00000005731	pdzd7a (ENSIPUG00000005667)	SFXN1 (ENSIPUG00000005638)	selenou1a (ENSIPUG00000005592)	CKB (ENSIPUG00000005495) #22	mat1a (ENSIPUG00000005424)	zgc:154058 (ENSIPUG00000005399)	ENSIPUG00000005372	ENSIPUG00000005349	ENSIPUG00000005336	STOX1 (ENSIPUG00000005320)	ccar1 (ENSIPUG00000005123)	si:dkey-228d14.5 (ENSIPUG00000005094)	eif4e1c (ENSIPUG00000005027)	tet1 (ENSIPUG00000005004)	Slc25a16 (ENSIPUG00000004964)	ALOX5 (ENSIPUG00000004930)	Fam21 (ENSIPUG00000004769)	zfand4 (ENSIPUG00000004728)	marchf8 (ENSIPUG00000004619)
Channel catfish	MODERN SPECIES	263																CKB (ENSIPUG00000011280) #22
Channel catfish	MODERN SPECIES	22	ikzf1 (ENSIPUG00000003841)	c3h7orf72 (ENSIPUG00000003880)	vwc2 (ENSIPUG00000003893)	ENSIPUG00000003914	zgc:110045 (ENSIPUG00000003932)	mocos (ENSIPUG00000003946)	anxa11a (ENSIPUG00000003965)	dlg5 (ENSIPUG00000004020)	kcnma1a (ENSIPUG00000004383)	CJ011 (ENSIPUG00000004493)	znf503 (ENSIPUG00000004515)	comtd1 (ENSIPUG00000004535)	ifit8 (ENSIPUG00000004546)	ENSIPUG00000004549	vdac2 (ENSIPUG00000004553)	ckba (ENSIPUG00000004569) #22	ENSIPUG00000004596	ENSIPUG00000004606 #23	marchf8 (ENSIPUG00000004619)	zfand4 (ENSIPUG00000004728)	Fam21 (ENSIPUG00000004769)	ALOX5 (ENSIPUG00000004930)	Slc25a16 (ENSIPUG00000004964)	tet1 (ENSIPUG00000005004)	eif4e1c (ENSIPUG00000005027)	si:dkey-228d14.5 (ENSIPUG00000005094)	ccar1 (ENSIPUG00000005123)	STOX1 (ENSIPUG00000005320)	ENSIPUG00000005336	ENSIPUG00000005349	ENSIPUG00000005372
Channel catfish	MODERN SPECIES	22	kcnma1a (ENSIPUG00000004383)	dlg5 (ENSIPUG00000004020)	anxa11a (ENSIPUG00000003965)	mocos (ENSIPUG00000003946)	zgc:110045 (ENSIPUG00000003932)	ENSIPUG00000003914	vwc2 (ENSIPUG00000003893)	c3h7orf72 (ENSIPUG00000003880)	ikzf1 (ENSIPUG00000003841)	fignl1 (ENSIPUG00000003825)	ttl (ENSIPUG00000003796)	klc1 (ENSIPUG00000003683) #18	apopt1 (ENSIPUG00000003665) #20	bag5 (ENSIPUG00000003641) #19	trmt61a (ENSIPUG00000003613) #21	ckba (ENSIPUG00000003503) #22	mark3 (ENSIPUG00000003398) #23	eif5 (ENSIPUG00000003331) #25	ENSIPUG00000003305 #27	exoc3l4 (ENSIPUG00000003285) #28	ENSIPUG00000003257 #28	ENSIPUG00000003245	AIFM2 (ENSIPUG00000003201)	ninl (ENSIPUG00000003152)	gins1 (ENSIPUG00000003089)	PNLIPRP2 (ENSIPUG00000002993)	pitx3 (ENSIPUG00000002981)	gbf1 (ENSIPUG00000002803)	H2afy2 (ENSIPUG00000002757)	ENSIPUG00000002709	ENSIPUG00000002680
Channel catfish	MODERN SPECIES	22	slc25a28 (ENSIPUG00000000758)	nkx3.3 (ENSIPUG00000000771)	Nkx2-3 (ENSIPUG00000000774)	got1 (ENSIPUG00000000781)	cnnm1 (ENSIPUG00000000793)	hpse2 (ENSIPUG00000000802)	hps1 (ENSIPUG00000000808)	st3gal7 (ENSIPUG00000000817)	ENSIPUG00000000831	morn4 (ENSIPUG00000000904)	nkx1.2la (ENSIPUG00000000917)	PRKG1 (ENSIPUG00000000923)	dkk1a (ENSIPUG00000001048)	pcdh15a (ENSIPUG00000001088)	ENSIPUG00000002311	ckba (ENSIPUG00000002321) #22	ENSIPUG00000002368	ENSIPUG00000002379	Cisd1 (ENSIPUG00000002387)	DHX57 (ENSIPUG00000002412)	galm (ENSIPUG00000002550)	atl2 (ENSIPUG00000002603)	ENSIPUG00000002624	HELLS (ENSIPUG00000002634)	ENSIPUG00000002680	ENSIPUG00000002709	H2afy2 (ENSIPUG00000002757)	gbf1 (ENSIPUG00000002803)	pitx3 (ENSIPUG00000002981)	PNLIPRP2 (ENSIPUG00000002993)	gins1 (ENSIPUG00000003089)
Channel catfish	MODERN SPECIES	28	CFL2 (ENSIPUG00000001293)	SNX6 (ENSIPUG00000001204)	eapp (ENSIPUG00000001140)	sptssa (ENSIPUG00000001121)	egln3 (ENSIPUG00000001099)	npas3 (ENSIPUG00000001060)	AKAP6 (ENSIPUG00000001037)	zranb1b (ENSIPUG00000000984)	Psmc1 (ENSIPUG00000000956)	ENSIPUG00000000939	ENSIPUG00000000937	ENSIPUG00000000924	ENSIPUG00000000912	tonsl (ENSIPUG00000000901)	edrf1 (ENSIPUG00000000846)	CKB (ENSIPUG00000000834) #22	tex36 (ENSIPUG00000000825)	VCPKMT (ENSIPUG00000000816)	ENSIPUG00000000807	aspg (ENSIPUG00000000734) #11	KIF26A (ENSIPUG00000000684) ##10	ENSIPUG00000000674	tmem179 (ENSIPUG00000000666) #8	ENSIPUG00000000642	ubr1 (ENSIPUG00000000615)	ERH (ENSIPUG00000000598)	ENSIPUG00000000584	ENSIPUG00000000575	exd2 (ENSIPUG00000000560)	numb (ENSIPUG00000000525)	galnt16 (ENSIPUG00000000504)
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00940000154935.d	ENSGT00940000155303.l	ENSGT00940000156914.o.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b.g #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v	ENSGT00940000158120
Characoidei	ANCESTRAL SPECIES	5	ENSGT00940000154935.d	ENSGT00940000155303.l	ENSGT00940000156914.o.b	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b.g #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000156837	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v
Red-bellied piranha	MODERN SPECIES	10	ENSPNAG00000027955	dlg5a (ENSPNAG00000028221)	anxa11a (ENSPNAG00000028657)	MOCOS (ENSPNAG00000028740)	zgc:110045 (ENSPNAG00000004501)	ENSPNAG00000006838	vwc2 (ENSPNAG00000029192)	SPATA48 (ENSPNAG00000004535)	ikzf1 (ENSPNAG00000004566)	fignl1 (ENSPNAG00000029349)	ttl (ENSPNAG00000005397)	klc1a (ENSPNAG00000004610) #18	coa8 (ENSPNAG00000004611) #20	bag5 (ENSPNAG00000029483) #19	trmt61a (ENSPNAG00000029500) #21	ckba (ENSPNAG00000004654) #22	mark3a (ENSPNAG00000029687) #23	EIF5 (ENSPNAG00000029712) #25	ENSPNAG00000029768 #27	exoc3l4 (ENSPNAG00000004678) #28	ENSPNAG00000029805 #28	ENSPNAG00000029810 #28	ENSPNAG00000029823	ENSPNAG00000029830	ENSPNAG00000029833	ENSPNAG00000004680	ENSPNAG00000029857	AIFM2 (ENSPNAG00000029863)	ninl (ENSPNAG00000029902)	gins1 (ENSPNAG00000029876)	PNLIPRP2 (ENSPNAG00000029920)
Mexicana tetra	MODERN SPECIES	17	kcnma1a (ENSAMXG00000001588)	ENSAMXG00000035070	dlg5a (ENSAMXG00000001625)	anxa11a (ENSAMXG00000033610)	MOCOS (ENSAMXG00000001739)	ENSAMXG00000001760	vwc2 (ENSAMXG00000033541)	SPATA48 (ENSAMXG00000001803)	ikzf1 (ENSAMXG00000001814)	fignl1 (ENSAMXG00000026057)	ttl (ENSAMXG00000001831)	klc1a (ENSAMXG00000035475) #18	coa8 (ENSAMXG00000031206) #20	bag5 (ENSAMXG00000001856) #19	trmt61a (ENSAMXG00000037952) #21	ckba (ENSAMXG00000001864) #22	mark3a (ENSAMXG00000001870) #23	EIF5 (ENSAMXG00000001895) #25	ENSAMXG00000001905 #27	exoc3l4 (ENSAMXG00000001925) #28	ENSAMXG00000033759	ENSAMXG00000038628	ENSAMXG00000035908	ENSAMXG00000029877	ENSAMXG00000034311	AIFM2 (ENSAMXG00000001966)	ninl (ENSAMXG00000001987)	gins1 (ENSAMXG00000041281)	PNLIPRP2 (ENSAMXG00000002005)	pitx3 (ENSAMXG00000029072)	GBF1 (ENSAMXG00000002009)
Electric eel	MODERN SPECIES	1	lrmda (ENSEEEG00000008116)	kcnma1a (ENSEEEG00000006264)	dlg5a (ENSEEEG00000006191)	ENSEEEG00000005282	MOCOS (ENSEEEG00000005202)	ENSEEEG00000005191	vwc2 (ENSEEEG00000005186)	ikzf1 (ENSEEEG00000005094)	fignl1 (ENSEEEG00000005088)	ttl (ENSEEEG00000005087)	klc1a (ENSEEEG00000004989) #18	coa8 (ENSEEEG00000004958) #20	bag5 (ENSEEEG00000004951) #19	trmt61a (ENSEEEG00000004950) #21	ENSEEEG00000004949	ckba (ENSEEEG00000004850) #22	mark3a (ENSEEEG00000004785) #23	EIF5 (ENSEEEG00000004780) #25	ENSEEEG00000004775 #27	ENSEEEG00000004773	ENSEEEG00000004768	AIFM2 (ENSEEEG00000004763)	ninl (ENSEEEG00000004759)	gins1 (ENSEEEG00000004750)	PNLIPRP2 (ENSEEEG00000004628)	pitx3 (ENSEEEG00000004623)	ENSEEEG00000004622	macroh2a2 (ENSEEEG00000004618)	ENSEEEG00000004611	hells (ENSEEEG00000004554)	atl2 (ENSEEEG00000003481)
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00940000157051	ENSGT00940000162185	ENSGT00940000162768.A	ENSGT00720000108792.A	ENSGT00940000175717	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000161907	ENSGT00940000155555.b #18	ENSGT00940000169764	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b.g #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968.c	ENSGT00940000154518.b	ENSGT00940000156925.v	ENSGT00940000158120	ENSGT00940000154865
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	96	ENSGT00940000153289.a.a.a.a	ENSGT00940000154935.d.d	ENSGT00940000155303.l.b	ENSGT00940000156914.o.b	ENSGT00940000157051.d	ENSGT00940000162768.A.b	ENSGT00720000108792.A.e	ENSGT00940000175717	ENSGT00940000156782.c.e	ENSGT00940000161552.c	ENSGT00940000161907.c	ENSGT00940000155555.b.a #18	ENSGT00390000008212.j #20	ENSGT00940000158888.p #19	ENSGT00940000154239.a.f #21	ENSGT00950000182772.A.a.b.`b.a.m #22	ENSGT01030000234848	ENSGT00940000154862.x.b.k #23	ENSGT00390000016478.c.a.b #25
Goldfish	MODERN SPECIES	4	kcnma1a (ENSCARG00000048423)	dlg5a (ENSCARG00000050588)	anxa11a (ENSCARG00000051271)	ENSCARG00000053760	vwc2 (ENSCARG00000053870)	ENSCARG00000053879	ENSCARG00000053884	ENSCARG00000053892	ikzf1 (ENSCARG00000053923)	fignl1 (ENSCARG00000054206)	ttl (ENSCARG00000054215)	klc1a (ENSCARG00000054267) #18	coa8 (ENSCARG00000054688) #20	bag5 (ENSCARG00000054747) #19	trmt61a (ENSCARG00000054803) #21	ckba (ENSCARG00000054814) #22	ENSCARG00000054937	mark3a (ENSCARG00000054962) #23	EIF5 (ENSCARG00000055286) #25	ENSCARG00000055390 #27	exoc3l4 (ENSCARG00000055416) #28	ENSCARG00000055436	ENSCARG00000055448	pitx3 (ENSCARG00000055479)	GBF1 (ENSCARG00000055550)	macroh2a2 (ENSCARG00000055870)	ENSCARG00000055916	hells (ENSCARG00000056179)	atl2 (ENSCARG00000056846)	DHX57 (ENSCARG00000062466)	epas1b (ENSCARG00000062718)
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00940000156914.o.b	ENSGT00940000157051.d	ENSGT00940000162768.A.b	ENSGT00720000108792.A.e	ENSGT00940000175717	ENSGT00940000156782.c.e	ENSGT00940000161552.c	ENSGT00940000161907.c	ENSGT00940000155555.b.a #18	ENSGT00390000008212.j #20	ENSGT00940000158888.p #19	ENSGT00940000154239.a.e.b #21	ENSGT00950000182772.A.a.b.`b.a.n #22	ENSGT01030000234848	ENSGT00940000154239.a.f #21	ENSGT00950000182772.A.a.b.`b.a.m #22	ENSGT00940000154862.x.b.k #23	ENSGT00390000016478.c.a.b #25	ENSGT01030000234613.b.a.a.c.a.b #27	ENSGT01030000234613.b.a.b.g.a #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366.i	ENSGT00390000004582.e	ENSGT00660000095541.a.a.i	ENSGT00390000013968.c	ENSGT00940000154518.b.j	ENSGT00940000156925.v.a	ENSGT00940000158120.g	ENSGT00940000154865.kc.b
Common carp reference	MODERN SPECIES	18	ENSCCRG00000081045	kcnma1a (ENSCCRG00000054915)	dlg5a (ENSCCRG00000028965)	anxa11a (ENSCCRG00000022115)	ENSCCRG00000077151	ENSCCRG00000040605	vwc2 (ENSCCRG00000027662)	ENSCCRG00000054106	ikzf1 (ENSCCRG00000080442)	fignl1 (ENSCCRG00000063996)	ttl (ENSCCRG00000023529)	klc1a (ENSCCRG00000061513) #18	coa8 (ENSCCRG00000020794) #20	bag5 (ENSCCRG00000031680) #19	trmt61a (ENSCCRG00000055745) #21	ckba (ENSCCRG00000018553) #22	mark3a (ENSCCRG00000074047) #23	EIF5 (ENSCCRG00000018349) #25	ENSCCRG00000018498 #27	ENSCCRG00000018934 #28	ENSCCRG00000041921	ENSCCRG00000078542	pitx3 (ENSCCRG00000038544)	ENSCCRG00000038554	macroh2a2 (ENSCCRG00000018156)	ENSCCRG00000073729	ENSCCRG00000056281	hells (ENSCCRG00000027223)	atl2 (ENSCCRG00000060545)	ENSCCRG00000024186	epas1b (ENSCCRG00000024181)
Golden-line barbel	MODERN SPECIES	44	lrmda (ENSSGRG00000045813)	kcnma1a (ENSSGRG00000043159)	dlg5a (ENSSGRG00000043037)	ENSSGRG00000041822	MOCOS (ENSSGRG00000041645)	zgc:110045 (ENSSGRG00000041643)	vwc2 (ENSSGRG00000041642)	ikzf1 (ENSSGRG00000041641)	fignl1 (ENSSGRG00000041640)	ttl (ENSSGRG00000041639)	klc1a (ENSSGRG00000041636) #18	coa8 (ENSSGRG00000041635) #20	bag5 (ENSSGRG00000041632) #19	trmt61a (ENSSGRG00000041629) #21	ENSSGRG00000041627	ckba (ENSSGRG00000040901) #22	mark3a (ENSSGRG00000040691) #23	ENSSGRG00000040476 #25	ENSSGRG00000040471 #27	exoc3l4 (ENSSGRG00000040470) #28	ENSSGRG00000040463	ENSSGRG00000040460	AIFM2 (ENSSGRG00000040455)	ninl (ENSSGRG00000040452)	ENSSGRG00000040449	pitx3 (ENSSGRG00000040436)	ENSSGRG00000040434
Cyprininae	ANCESTRAL SPECIES	87	ENSGT00940000157051.c	ENSGT00940000162185	ENSGT00720000108792.A.f	ENSGT00940000156782.c.f	ENSGT00940000161552.d	ENSGT00940000161907.d	ENSGT00940000155555.b.b #18	ENSGT00940000169764	ENSGT00390000008212.i #20	ENSGT00940000158888.o #19	ENSGT00940000154239.a.e.a #21	ENSGT01030000234613.b.a.a.c.a.b #27	ENSGT01030000234613.b.a.b.g.a #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000154239.a.e.b #21	ENSGT00950000182772.A.a.b.`b.a.n #22	ENSGT01100000266056	ENSGT00940000154862.x.b.l #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a.a #27	ENSGT01030000234613.b.a.b.g.b #28	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366.i	ENSGT00390000004582.e	ENSGT00660000095541.a.a.i	ENSGT00390000013968.c	ENSGT00940000154518.b.j	ENSGT00940000156925.v.a	ENSGT00940000158120.g	ENSGT00940000154865.kc.b
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00940000153289.a.a.a.a	ENSGT00940000154935.d.d	ENSGT00940000155303.l.b	ENSGT00940000156914.o.b	ENSGT00940000157051.d	ENSGT00940000162768.A.b	ENSGT00720000108792.A.e	ENSGT00940000175717	ENSGT00940000156782.c.e	ENSGT00940000161552.c	ENSGT00940000161907.c	ENSGT00940000155555.b.a #18	ENSGT00390000008212.j #20	ENSGT00940000158888.p #19	ENSGT00940000154239.a.e.b #21	ENSGT00950000182772.A.a.b.`b.a.n #22	ENSGT01030000234848	ENSGT00940000154239.a.f #21	ENSGT00950000182772.A.a.b.`b.a.m #22	ENSGT00940000154862.x.b.k #23	ENSGT00390000016478.c.a.b #25	ENSGT01030000234613.b.a.a.c.a.b #27	ENSGT01030000234613.b.a.b.g.a #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000160366.i	ENSGT00390000004582.e	ENSGT00660000095541.a.a.i	ENSGT00390000013968.c	ENSGT00940000154518.b.j
Golden-line barbel	MODERN SPECIES	116	ENSSGRG00000012099	znf503 (ENSSGRG00000012101)	lrmda (ENSSGRG00000012105)	kcnma1a (ENSSGRG00000012273)	dlg5a (ENSSGRG00000019266)	anxa11a (ENSSGRG00000019872)	ENSSGRG00000019909	ENSSGRG00000019910	vwc2 (ENSSGRG00000019911)	ENSSGRG00000019913	ikzf1 (ENSSGRG00000019915)	klc1a (ENSSGRG00000019933) #18	coa8 (ENSSGRG00000020162) #20	bag5 (ENSSGRG00000020163) #19	trmt61a (ENSSGRG00000020170) #21	ckba (ENSSGRG00000020174) #22	ENSSGRG00000020175	mark3a (ENSSGRG00000020219) #23	ENSSGRG00000022422 #25	ENSSGRG00000022536 #27	ENSSGRG00000022540	ENSSGRG00000022543	ENSSGRG00000022544	ENSSGRG00000022546	ENSSGRG00000022547	ninl (ENSSGRG00000022553)	gins1 (ENSSGRG00000022567)	pitx3 (ENSSGRG00000022571)	GBF1 (ENSSGRG00000022584)	macroh2a2 (ENSSGRG00000022749)	ENSSGRG00000022842
Goldfish	MODERN SPECIES	31	ENSCARG00000029306	kcnma1a (ENSCARG00000029529)	dlg5a (ENSCARG00000037005)	anxa11a (ENSCARG00000044215)	MOCOS (ENSCARG00000044885)	ENSCARG00000045010	vwc2 (ENSCARG00000045082)	ikzf1 (ENSCARG00000045160)	fignl1 (ENSCARG00000045590)	ttl (ENSCARG00000045607)	klc1a (ENSCARG00000045729) #18	ENSCARG00000046408	coa8 (ENSCARG00000046422) #20	bag5 (ENSCARG00000046451) #19	trmt61a (ENSCARG00000046512) #21	ckba (ENSCARG00000046562) #22	ENSCARG00000046809	mark3a (ENSCARG00000046908) #23	EIF5 (ENSCARG00000050598) #25	ENSCARG00000050625	ENSCARG00000050635 #27	exoc3l4 (ENSCARG00000050658) #28	ENSCARG00000050690 #28	ENSCARG00000050710	ENSCARG00000050720	AIFM2 (ENSCARG00000050745)	ninl (ENSCARG00000050765)	gins1 (ENSCARG00000050815)	pitx3 (ENSCARG00000050860)	GBF1 (ENSCARG00000050901)	macroh2a2 (ENSCARG00000051088)
Zebrafish	MODERN SPECIES	4	dlg5a (ENSDARG00000074059)	anxa11a (ENSDARG00000077383)	zgc:110045 (ENSDARG00000057141)	ENSDARG00000110961	vwc2 (ENSDARG00000076495)	SPATA48 (ENSDARG00000109818)	ikzf1 (ENSDARG00000013539)	fignl1 (ENSDARG00000016427)	ttl (ENSDARG00000062418)	ENSDARG00000093131	klc1a (ENSDARG00000009796) #18	coa8 (ENSDARG00000092473) #20	bag5 (ENSDARG00000017316) #19	trmt61a (ENSDARG00000008480) #21	ENSDARG00000111126	ckba (ENSDARG00000069752) #22	mark3a (ENSDARG00000019345) #23	loxl3b (ENSDARG00000039563)	pank2 (ENSDARG00000003311)	mavs (ENSDARG00000069733)	ENSDARG00000104179	sfxn5a (ENSDARG00000103595)	emx1 (ENSDARG00000039569)	noto (ENSDARG00000021201)	cdc25b (ENSDARG00000010792)	ap5s1 (ENSDARG00000076755)	gfra4a (ENSDARG00000056651)	atrn (ENSDARG00000062164)	EIF2AK3 (ENSDARG00000062139)	rpia (ENSDARG00000056640)	slc4a11 (ENSDARG00000075532)
Clupeiformes	ANCESTRAL SPECIES	245	ENSGT00940000159673	ENSGT00390000018691.c	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.ob.a.r	ENSGT00940000156116.A	ENSGT00940000164854.b.e	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28
Denticle herring	MODERN SPECIES		CFAP99 (ENSDCDG00000031727)	XKR6 (ENSDCDG00000031725)	maco1b (ENSDCDG00000031707)	ldlrap1b (ENSDCDG00000031701)	FNDC5 (ENSDCDG00000031695)	olig4 (ENSDCDG00000031690)	bsdc1 (ENSDCDG00000031620)	marcksl1a (ENSDCDG00000031610)	ENSDCDG00000031608	zfyve21 (ENSDCDG00000031602) #16	klc1a (ENSDCDG00000031533) #18	coa8 (ENSDCDG00000031527) #20	bag5 (ENSDCDG00000031523) #19	trmt61a (ENSDCDG00000031521) #21	ENSDCDG00000031520	ckba (ENSDCDG00000031514) #22	mark3a (ENSDCDG00000030887) #23	EIF5 (ENSDCDG00000030820) #25	ENSDCDG00000030808 #27	exoc3l4 (ENSDCDG00000030806) #28	CPXM1 (ENSDCDG00000030797)	wdr32 (ENSDCDG00000030787)	pomk (ENSDCDG00000030785)	zgc:123321 (ENSDCDG00000030783)	si:dkey-33c12.4 (ENSDCDG00000030779)	pcgf1 (ENSDCDG00000030775)	si:dkey-33c12.3 (ENSDCDG00000030772)	mrps26 (ENSDCDG00000030767)	si:dkey-112g5.16 (ENSDCDG00000030763)	loxl3b (ENSDCDG00000030698)	pank2 (ENSDCDG00000030680)
Clupeocephala	ANCESTRAL SPECIES	489															ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164834.b	ENSGT01030000234517.H.a #30
Euteleosteomorpha	ANCESTRAL SPECIES	345															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164834.b	ENSGT01030000234517.H.a #30
Acanthomorphata	ANCESTRAL SPECIES	155	ENSGT00390000017610.b	ENSGT00940000155490.a.d	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B ##10
Euacanthomorphacea	ANCESTRAL SPECIES	87	ENSGT00390000017610.b	ENSGT00940000155490.a.d	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B ##10
Percomorphaceae	ANCESTRAL SPECIES	59	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00970000195456	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B ##10
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000163520.A.a.a.a.b.b	ENSGT00940000157501	ENSGT00940000159887
Ovalentaria	ANCESTRAL SPECIES	33	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k
Atherinomorphae	ANCESTRAL SPECIES	27	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00390000018676	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000157501	ENSGT00940000159887
Aplocheiloidei	ANCESTRAL SPECIES	57	ENSGT00390000018676	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
Mangrove rivulus	MODERN SPECIES	101	flvcr1 (ENSKMAG00000015196)	ENSKMAG00000015187	tatdn3 (ENSKMAG00000015161)	nsl1 (ENSKMAG00000015144)	atf3 (ENSKMAG00000015125)	pex3 (ENSKMAG00000015076)	ENSKMAG00000015051	AIG1 (ENSKMAG00000015023)	hivep2a (ENSKMAG00000014993)	ENSKMAG00000014965	vipas39 (ENSKMAG00000014894)	ENSKMAG00000014861	cdc42bpb (ENSKMAG00000014775) #30	ENSKMAG00000014742	prph2lb (ENSKMAG00000014729)	ckbb (ENSKMAG00000014706) #22	MARK3 (ENSKMAG00000014622) #23	ENSKMAG00000014556 #27	ENSKMAG00000014537	CEP170B (ENSKMAG00000014495)	INF2 (ENSKMAG00000014440) ##7	ENSKMAG00000014413	ENSKMAG00000014396	ENSKMAG00000014377	ENSKMAG00000014361	ENSKMAG00000014340
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015007418	ENSNFUG00015007423	FLVCR1 (ENSNFUG00015007432)	NSL1 (ENSNFUG00015007438)	batf3 (ENSNFUG00015007440)	atf3 (ENSNFUG00015007445)	ENSNFUG00015002623	pex3 (ENSNFUG00015002636)	ADAT2 (ENSNFUG00015002668)	AIG1 (ENSNFUG00015002674)	HIVEP2 (ENSNFUG00015002681)	ENSNFUG00015002689	ebna1bp2 (ENSNFUG00015002700)	ENSNFUG00015002705	vipas39 (ENSNFUG00015002718)	ckbb (ENSNFUG00015002742) #22	cdc42bpb (ENSNFUG00015002882) #30	prph2lb (ENSNFUG00015003288)	ENSNFUG00015003292	MARK3 (ENSNFUG00015003315) #23	ENSNFUG00015003422 #27	Nfu_g_1_018754 (ENSNFUG00015003436)	PLEKHG3 (ENSNFUG00015003463)	ENSNFUG00015003482	spint1b (ENSNFUG00015003492)	pak6b (ENSNFUG00015003496)	myh6 (ENSNFUG00015003500)	ENSNFUG00015003502	ENSNFUG00015003509	ENSNFUG00015003515	KIF26A (ENSNFUG00015003522) ##10
Cyprinodontoidei	ANCESTRAL SPECIES	32	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000157501	ENSGT00940000159887
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B ##10	ENSGT00950000183116.b.a.b.a.e	ENSGT01030000234667.b.f.a.r
Poecilia	ANCESTRAL SPECIES	71	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
NAME_6	ANCESTRAL SPECIES	165	ENSGT01030000234625.B.c	ENSGT00720000108846.b	ENSGT00390000001374	ENSGT00940000161120	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00950000183116.b.a.b.a.e	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
Sailfin molly	MODERN SPECIES	779	batf3 (ENSPLAG00000000460)	atf3 (ENSPLAG00000021318)	rps7 (ENSPLAG00000021335)	ENSPLAG00000021349	pex3 (ENSPLAG00000021381)	ENSPLAG00000021399	AIG1 (ENSPLAG00000021426)	hivep2a (ENSPLAG00000021436)	ENSPLAG00000021446	vipas39 (ENSPLAG00000021461)	ENSPLAG00000021478	cdc42bpb (ENSPLAG00000021501) #30	ENSPLAG00000021523 #30	ENSPLAG00000021542	prph2lb (ENSPLAG00000021548)	ckbb (ENSPLAG00000021564) #22	ENSPLAG00000021569 #23
Amazon molly	MODERN SPECIES	610	flvcr1 (ENSPFOG00000017147)	tatdn3 (ENSPFOG00000017125)	nsl1 (ENSPFOG00000017115)	batf3 (ENSPFOG00000017107)	atf3 (ENSPFOG00000017099)	pex3 (ENSPFOG00000017063)	ENSPFOG00000017037	AIG1 (ENSPFOG00000017002)	hivep2a (ENSPFOG00000016971)	ENSPFOG00000016937	vipas39 (ENSPFOG00000016882)	ENSPFOG00000020874	cdc42bpb (ENSPFOG00000016691) #30	ENSPFOG00000016602	prph2lb (ENSPFOG00000016586)	ckbb (ENSPFOG00000016570) #22	ENSPFOG00000016567 #23	ENSPFOG00000016566 #23	ENSPFOG00000016535 #27	ENSPFOG00000023717	CEP170B (ENSPFOG00000016483)	INF2 (ENSPFOG00000016421) ##7	ENSPFOG00000016329	PLEKHG3 (ENSPFOG00000016283)	ENSPFOG00000016243	ENSPFOG00000022108	pak6b (ENSPFOG00000016211)	INAFM2 (ENSPFOG00000020872)	ENSPFOG00000016202	zbtb1 (ENSPFOG00000016193)	ZBTB25 (ENSPFOG00000016187)
Guppy	MODERN SPECIES	452	flvcr1 (ENSPREG00000014080)	tatdn3 (ENSPREG00000014054)	nsl1 (ENSPREG00000014035)	batf3 (ENSPREG00000014025)	atf3 (ENSPREG00000013998)	pex3 (ENSPREG00000013958)	ENSPREG00000013931	AIG1 (ENSPREG00000013905)	hivep2a (ENSPREG00000013853)	ENSPREG00000013807	vipas39 (ENSPREG00000013772)	ENSPREG00000013747	cdc42bpb (ENSPREG00000013594) #30	ENSPREG00000013538	prph2lb (ENSPREG00000013530)	ckbb (ENSPREG00000013507) #22	ENSPREG00000013502 #23	ENSPREG00000013486 #23	ENSPREG00000013473 #23	ENSPREG00000013467	CEP170B (ENSPREG00000013399)	ENSPREG00000013307 ##7	ENSPREG00000013229	ENSPREG00000013195	spint1b (ENSPREG00000013167)	pak6b (ENSPREG00000013145)	myh6 (ENSPREG00000013132)	ENSPREG00000013114	ENSPREG00000013085	zbtb1 (ENSPREG00000013078)	ENSPREG00000013069
Platyfish	MODERN SPECIES	6	ENSXMAG00000025989	batf3 (ENSXMAG00000029183)	atf3 (ENSXMAG00000026118)	ENSXMAG00000023925	pex3 (ENSXMAG00000021480)	ENSXMAG00000017810	AIG1 (ENSXMAG00000017816)	hivep2a (ENSXMAG00000013507)	ENSXMAG00000013522	vipas39 (ENSXMAG00000013526)	ENSXMAG00000021929	ENSXMAG00000019758	cdc42bpb (ENSXMAG00000013537) #30	ENSXMAG00000029153	prph2lb (ENSXMAG00000006717)	ckbb (ENSXMAG00000006694) #22	MARK3 (ENSXMAG00000006647) #23	ENSXMAG00000029044 #27	ENSXMAG00000022562	CEP170B (ENSXMAG00000009581)	ENSXMAG00000027819 ##7	PLEKHG3 (ENSXMAG00000009599)	ENSXMAG00000009603	ENSXMAG00000021868	pak6b (ENSXMAG00000009610)	myh6 (ENSXMAG00000026244)	ENSXMAG00000026209	zbtb1 (ENSXMAG00000020178)	ENSXMAG00000027665	ENSXMAG00000026613	ENSXMAG00000009631
NAME_4	ANCESTRAL SPECIES	122	ENSGT00940000157418.a	ENSGT01030000234625.B.c	ENSGT00940000180392	ENSGT00390000001374	ENSGT00940000156376	ENSGT00940000165183	ENSGT00940000164335	ENSGT00940000158696	ENSGT00940000156512.b.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7
Sheepshead minnow	MODERN SPECIES	1857																ckbb (ENSCVAG00000017265) #22	ENSCVAG00000017235 #23	ENSCVAG00000017227 #23	ENSCVAG00000017216 #23	ENSCVAG00000017195 #27
Mummichog	MODERN SPECIES	2330	ENSFHEG00000011887	nsl1 (ENSFHEG00000011852)	atf3 (ENSFHEG00000011790)	pex3 (ENSFHEG00000011775)	ENSFHEG00000011660	AIG1 (ENSFHEG00000011636)	hivep2a (ENSFHEG00000011595)	ENSFHEG00000011578	vipas39 (ENSFHEG00000011567)	ENSFHEG00000011550	ENSFHEG00000011545	cdc42bpb (ENSFHEG00000011532) #30	ENSFHEG00000011464 #30	ENSFHEG00000011457	prph2lb (ENSFHEG00000011447)	ckbb (ENSFHEG00000011432) #22	ENSFHEG00000011377	ENSFHEG00000011367 #23	ENSFHEG00000011355 #23	ENSFHEG00000011315	CEP170B (ENSFHEG00000011300)	ENSFHEG00000011130 ##7	ENSFHEG00000011119 ##7	ENSFHEG00000011101	ENSFHEG00000011078	ENSFHEG00000011053	pak6b (ENSFHEG00000011029)	myh6 (ENSFHEG00000011004)	ENSFHEG00000010990	ZBTB25 (ENSFHEG00000010979)	ENSFHEG00000010969
Oryzias	ANCESTRAL SPECIES	38	ENSGT00940000161252.h	ENSGT00390000007473	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000163460.a.a.b	ENSGT00940000156512.b.b	ENSGT00940000155734.mb.a	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00940000163429.C	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588
Oryzias_a	DUPLICATION
Oryzias_a	ANCESTRAL SPECIES	48	ENSGT00940000161252.h	ENSGT00390000007473	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.a #22	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000163460.a.a.b	ENSGT00940000156512.b.b	ENSGT00940000155734.mb.a	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00940000163429.C	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000018186	PPP4R4 (ENSORLG00000018184)	serpina10a (ENSORLG00000018182)	xrcc3 (ENSORLG00000018178) #17	ENSORLG00000018175	ENSORLG00000018171	btbd6b (ENSORLG00000018172)	ENSORLG00000024040	ENSORLG00000029838	ENSORLG00000018168	vipas39 (ENSORLG00000018164)	ENSORLG00000018161	cdc42bpb (ENSORLG00000018157) #30	ENSORLG00000029120	ENSORLG00000025956	ENSORLG00000028187 #22	ccr6a (ENSORLG00000026698)	ENSORLG00000018150	ENSORLG00000018147	kidins220b (ENSORLG00000018143)	allc (ENSORLG00000018141)	ENSORLG00000018136	cpsf3 (ENSORLG00000018854)	ENSORLG00000023593	ENSORLG00000026593	hivep2a (ENSORLG00000018133)	ENSORLG00000018132	myt1la (ENSORLG00000018130)	rnaseh1 (ENSORLG00000018127)	rps7 (ENSORLG00000018123)	ENSORLG00000029165
Chinese medaka	MODERN SPECIES	3560															ENSOSIG00000004906	ckbb (ENSOSIG00000004904) #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.`b.b.b #22
Chinese medaka	MODERN SPECIES	827																ckbb (ENSOSIG00000009827) #22	ENSOSIG00000009833
Oryzias_b	ANCESTRAL SPECIES	55															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000163460.a.a.b	ENSGT00940000156512.b.b	ENSGT00940000155734.mb.a	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00940000163429.C	ENSGT00950000183024.a.a.b.r	ENSGT00390000001588
Javanese ricefish	MODERN SPECIES	16	PRKD3 (ENSOJAG00000019421)	cnksr3 (ENSOJAG00000020203)	rps7 (ENSOJAG00000020241)	rnaseh1 (ENSOJAG00000020297)	myt1la (ENSOJAG00000020313)	e2f6 (ENSOJAG00000020421)	hivep2a (ENSOJAG00000020438)	ENSOJAG00000020450	ENSOJAG00000020467	ENSOJAG00000020472	cpsf3 (ENSOJAG00000020520)	asap2b (ENSOJAG00000020916)	ENSOJAG00000021586	allc (ENSOJAG00000021592)	ENSOJAG00000021634	ckbb (ENSOJAG00000021637) #22	ccr6a (ENSOJAG00000021679)	cep43 (ENSOJAG00000021689)	ENSOJAG00000021771	ENSOJAG00000021773
Indian medaka	MODERN SPECIES	103	ANKRD50 (ENSOMEG00000009495)	SOX1 (ENSOMEG00000009509)	arhgef7b (ENSOMEG00000009571)	ENSOMEG00000009639	ENSOMEG00000009658	unc50 (ENSOMEG00000000237)	ndufs1 (ENSOMEG00000009803)	ENSOMEG00000009830	creb3l1 (ENSOMEG00000009850)	HARBI1 (ENSOMEG00000009868)	atg13 (ENSOMEG00000010014)	kpnb3 (ENSOMEG00000010107)	ENSOMEG00000010136	ENSOMEG00000010146	prph2lb (ENSOMEG00000010160)	ckbb (ENSOMEG00000010183) #22	ENSOMEG00000010190	ENSOMEG00000010195	ccr6a (ENSOMEG00000010197)	ENSOMEG00000010218	kidins220b (ENSOMEG00000010367)	allc (ENSOMEG00000010415)	asap2b (ENSOMEG00000010590)	cpsf3 (ENSOMEG00000010647)	ENSOMEG00000010661
Ovalentaria_B	ANCESTRAL SPECIES	32	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00980000198805	ENSGT00940000156528.d
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000176951	ENSGT00940000154862.x.a.b.b #23	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B ##10
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b.k ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B ##10
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	833															ENSPNYG00000014625	ckbb (ENSPNYG00000014641) #22	ENSPNYG00000014658 #23	ENSPNYG00000014703	ENSPNYG00000014715	CEP170B (ENSPNYG00000014737)	ENSPNYG00000014784 ##7
P. nyererei	MODERN SPECIES	892													ENSPNYG00000003467	ENSPNYG00000003461	prph2lb (ENSPNYG00000003446)	ckbb (ENSPNYG00000003405) #22	ENSPNYG00000003379
Haplochromini_B	ANCESTRAL SPECIES	49	ENSGT00390000017610.b	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000176951.e.a	ENSGT00940000154862.x.a.b.b #23	ENSGT00940000164656.b.b.a.a.a.b.a.a.a.b.b.a.a.b	ENSGT00940000176951.e.b	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b.k ##7	ENSGT01100000263515.a.b.a.b.b.k.b.a.a	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b
Eastern happy	MODERN SPECIES	6	ENSACLG00000017611	PPP4R4 (ENSACLG00000017461)	ENSACLG00000017445	serpina10a (ENSACLG00000017350)	ENSACLG00000017337	xrcc3 (ENSACLG00000017294) #17	btbd6b (ENSACLG00000017278)	brf1b (ENSACLG00000017136)	ENSACLG00000017119	vipas39 (ENSACLG00000017078)	ENSACLG00000017057	cdc42bpb (ENSACLG00000016483) #30	ENSACLG00000016448	prph2lb (ENSACLG00000016443)	ENSACLG00000016439	ckbb (ENSACLG00000016418) #22	ENSACLG00000016403	ENSACLG00000016371	MARK3 (ENSACLG00000016273) #23	ENSACLG00000016253	ENSACLG00000016232	ENSACLG00000016200 #27	ENSACLG00000016172	CEP170B (ENSACLG00000016120)	ENSACLG00000016007 ##7	ENSACLG00000015991	ENSACLG00000015949	ZBTB25 (ENSACLG00000015938)	zbtb1 (ENSACLG00000015933)	ENSACLG00000015911	myh6 (ENSACLG00000015908)
Zebra mbuna	MODERN SPECIES	1097	ENSMZEG00005014916	tmem251 (ENSMZEG00005014923)	ENSMZEG00005014928	ENSMZEG00005014934	PPP4R4 (ENSMZEG00005014946)	serpina10a (ENSMZEG00005014963)	xrcc3 (ENSMZEG00005014979) #17	brf1b (ENSMZEG00005014995)	btbd6b (ENSMZEG00005015024)	ENSMZEG00005015028	vipas39 (ENSMZEG00005015035)	ENSMZEG00005015045	cdc42bpb (ENSMZEG00005015072) #30	ENSMZEG00005015194	prph2lb (ENSMZEG00005015203)	ckbb (ENSMZEG00005015208) #22	ENSMZEG00005015215	ENSMZEG00005015225 #23	ENSMZEG00005015250	ENSMZEG00005015255	ENSMZEG00005015273	ENSMZEG00005015280 ##7	ptchd4 (ENSMZEG00005015331)	CNIH3 (ENSMZEG00005015348)	ENSMZEG00005015360	ENSMZEG00005015366	rpl7l1 (ENSMZEG00005015377)	slc5a6a (ENSMZEG00005015396)	ENSMZEG00005015430	ephx1 (ENSMZEG00005015445)	lbr (ENSMZEG00005015462)
Lyretail cichlid	MODERN SPECIES	318	tmem251 (ENSNBRG00000002471)	ASB2 (ENSNBRG00000002476)	ENSNBRG00000002496	PPP4R4 (ENSNBRG00000002528)	ENSNBRG00000002654	xrcc3 (ENSNBRG00000002689) #17	brf1b (ENSNBRG00000002716)	btbd6b (ENSNBRG00000002756)	ENSNBRG00000002779	vipas39 (ENSNBRG00000002862)	ENSNBRG00000002907	cdc42bpb (ENSNBRG00000002959) #30	ENSNBRG00000003142	ENSNBRG00000003155	ENSNBRG00000003170	ckbb (ENSNBRG00000003192) #22	ENSNBRG00000003228	ENSNBRG00000003251	ENSNBRG00000003271	ENSNBRG00000003333 #23	ENSNBRG00000003440	ENSNBRG00000003458	ENSNBRG00000003484	CEP170B (ENSNBRG00000003530)	ENSNBRG00000003671 ##7	ENSNBRG00000003696	ENSNBRG00000003720	ZBTB25 (ENSNBRG00000003766)	zbtb1 (ENSNBRG00000003781)	INAFM2 (ENSNBRG00000003787)	ENSNBRG00000003801
Nile tilapia	MODERN SPECIES	6	ENSONIG00000032571	TAAR1 (ENSONIG00000020710)	ENSONIG00000032677	ENSONIG00000000224	ENSONIG00000030874	ENSONIG00000037254	ENSONIG00000027141	ENSONIG00000043137	ENSONIG00000038430	ENSONIG00000019032	vipas39 (ENSONIG00000019030)	ENSONIG00000021182	cdc42bpb (ENSONIG00000019024) #30	ENSONIG00000037245	prph2lb (ENSONIG00000020147)	ckbb (ENSONIG00000019020) #22	ENSONIG00000019019	ENSONIG00000019017	MARK3 (ENSONIG00000019014) #23	ENSONIG00000037576	ENSONIG00000019022	ENSONIG00000028114	ENSONIG00000018851 #27	ENSONIG00000018850	CEP170B (ENSONIG00000018846)	ENSONIG00000033376 ##7	ENSONIG00000018840	zbtb25 (ENSONIG00000042861)	zbtb1 (ENSONIG00000021262)	ENSONIG00000038327	ENSONIG00000030639
Midas cichlid	MODERN SPECIES	1248															ENSACIG00000010443	ckbb (ENSACIG00000010453) #22	ENSACIG00000010473	ENSACIG00000010481 #23	ENSACIG00000010531	ENSACIG00000010544	slc2a8 (ENSACIG00000010553)
Pomacentridae	ANCESTRAL SPECIES	81		ENSGT00700000106116.a.a	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a
Pomacentridae_A	ANCESTRAL SPECIES	77		ENSGT00700000106116.a.a	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00940000167286	ENSGT00980000198805	ENSGT00940000156528.d	ENSGT00940000158912.j.a
Amphiprion	ANCESTRAL SPECIES	58	ENSGT00390000010101	ENSGT00700000106116.a.a	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00950000183116.b.a.b.a	ENSGT00980000198805	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.j.a
Orange clownfish	MODERN SPECIES	2	EPM2A (ENSAPEG00000016979)	C14orf132 (ENSAPEG00000017002)	ENSAPEG00000017012	ENSAPEG00000017107	PPP4R4 (ENSAPEG00000017202)	ENSAPEG00000017231	xrcc3 (ENSAPEG00000017242) #17	brf1b (ENSAPEG00000017279)	ENSAPEG00000017359	btbd6b (ENSAPEG00000017405)	ENSAPEG00000017423	vipas39 (ENSAPEG00000017446)	ENSAPEG00000017521	cdc42bpb (ENSAPEG00000017537) #30	prph2lb (ENSAPEG00000017685)	ckbb (ENSAPEG00000017696) #22	ENSAPEG00000017729	ENSAPEG00000017744 #23	ENSAPEG00000017824 #27	ENSAPEG00000017852	ENSAPEG00000017874	CEP170B (ENSAPEG00000017917)	ENSAPEG00000018006 ##7	ENSAPEG00000018025 ##7	ENSAPEG00000018040	ZBTB25 (ENSAPEG00000018060)	zbtb1 (ENSAPEG00000018068)	ENSAPEG00000018074	ENSAPEG00000018309	pak6b (ENSAPEG00000018320)	ENSAPEG00000018335
Clown anemonefish	MODERN SPECIES	1603													ENSAOCG00000014877	cdc42bpb (ENSAOCG00000001010) #30	prph2lb (ENSAOCG00000014783)	ckbb (ENSAOCG00000014766) #22	ENSAOCG00000014754	MARK3 (ENSAOCG00000014728) #23	ENSAOCG00000014618 #27	ENSAOCG00000014602	ENSAOCG00000014591	CEP170B (ENSAOCG00000014540)	ENSAOCG00000014484 ##7	ENSAOCG00000014458
Spiny chromis	MODERN SPECIES	1195					PPP4R4 (ENSAPOG00000012342)	ENSAPOG00000012319	xrcc3 (ENSAPOG00000012312) #17	brf1b (ENSAPOG00000012303)	ENSAPOG00000012216	btbd6b (ENSAPOG00000012159)	ENSAPOG00000012146	vipas39 (ENSAPOG00000012120)	ENSAPOG00000012008	cdc42bpb (ENSAPOG00000011996) #30	prph2lb (ENSAPOG00000000922)	ckbb (ENSAPOG00000011781) #22	ENSAPOG00000011725	MARK3 (ENSAPOG00000011714) #23	ENSAPOG00000000760 #27	ENSAPOG00000011628	ENSAPOG00000011614
Bicolor damselfish	MODERN SPECIES	1575						ENSSPAG00000003108	xrcc3 (ENSSPAG00000003096) #17	ENSSPAG00000003066	btbd6b (ENSSPAG00000003043)	brf1b (ENSSPAG00000002964)	ENSSPAG00000002923	vipas39 (ENSSPAG00000002837)	ENSSPAG00000002819	cdc42bpb (ENSSPAG00000002537) #30	prph2lb (ENSSPAG00000002484)	ckbb (ENSSPAG00000002450) #22	MARK3 (ENSSPAG00000002343) #23	ENSSPAG00000002297 #27	ENSSPAG00000002283
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Tetraodontidae	ANCESTRAL SPECIES	36	ENSGT00940000157012.l	ENSGT00940000161252.h	ENSGT00390000007473	ENSGT00940000176260	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00390000013955	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000157058.k	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000156714.b	ENSGT00390000001793
Tetraodon	MODERN SPECIES	5							ASB2 (ENSTNIG00000004808)	ENSTNIG00000004807	serpina10a (ENSTNIG00000004806)	xrcc3 (ENSTNIG00000004805) #17	btbd6b (ENSTNIG00000004804)	brf1b (ENSTNIG00000004803)	vipas39 (ENSTNIG00000004802)	cdc42bpb (ENSTNIG00000004801) #30	prph2lb (ENSTNIG00000004800)	ckbb (ENSTNIG00000004799) #22	ENSTNIG00000004798 #23	CEP170B (ENSTNIG00000004797)	ENSTNIG00000000136	ENSTNIG00000004796	ENSTNIG00000004794	zbtb1 (ENSTNIG00000004793)	ENSTNIG00000004792	ENSTNIG00000004791	ccr6a (ENSTNIG00000004790)	ENSTNIG00000001118	kidins220b (ENSTNIG00000002502)	allc (ENSTNIG00000002503)	asap2b (ENSTNIG00000002504)	cpsf3 (ENSTNIG00000002505)	ADAM17 (ENSTNIG00000002506)
Fugu	MODERN SPECIES	7	ENSTRUG00000016018	ENSTRUG00000031677	CLDN20 (ENSTRUG00000016082)	tmem251 (ENSTRUG00000016086)	ENSTRUG00000020039	ubr7 (ENSTRUG00000016088)	ASB2 (ENSTRUG00000016113)	ENSTRUG00000016175	xrcc3 (ENSTRUG00000016205) #17	ENSTRUG00000020716	btbd6b (ENSTRUG00000016244)	brf1b (ENSTRUG00000016217)	vipas39 (ENSTRUG00000016248)	cdc42bpb (ENSTRUG00000016273) #30	prph2lb (ENSTRUG00000016317)	ckbb (ENSTRUG00000016321) #22	MARK3 (ENSTRUG00000016333) #23	ENSTRUG00000028942	ENSTRUG00000002634 #27	CEP170B (ENSTRUG00000029408)	ENSTRUG00000029307	ENSTRUG00000004077	pak6b (ENSTRUG00000004444)	ENSTRUG00000029598	myh6 (ENSTRUG00000005019)	zbtb1 (ENSTRUG00000005069)	ENSTRUG00000023261	ENSTRUG00000026080	ccr6 (ENSTRUG00000005295)	ENSTRUG00000005325	kidins220b (ENSTRUG00000005483)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1052														ENSLBEG00000014575 #30	prph2lb (ENSLBEG00000014555)	ckbb (ENSLBEG00000014523) #22	ENSLBEG00000014516	ENSLBEG00000014497 #27
Ballan wrasse	MODERN SPECIES	4903																ckbb (ENSLBEG00000012389) #22
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00970000193712	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B ##10	ENSGT00940000161983.b
Cottioidei	ANCESTRAL SPECIES	50	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.a.a #23	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000159075.B ##10	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000156714.b	ENSGT00940000161652.b.a
Stickleback	MODERN SPECIES	18	ENSGACG00000013577	ENSGACG00000013578	glo1 (ENSGACG00000013580)	ENSGACG00000013585	ENSGACG00000013588	ubr7 (ENSGACG00000013590)	tmem251 (ENSGACG00000013624)	ENSGACG00000013627	PPP4R4 (ENSGACG00000013637)	ENSGACG00000013654	xrcc3 (ENSGACG00000013664) #17	brf1b (ENSGACG00000013671)	vipas39 (ENSGACG00000013674)	cdc42bpb (ENSGACG00000013698) #30	prph2lb (ENSGACG00000013713)	ckbb (ENSGACG00000013716) #22	ENSGACG00000013756 #23	ENSGACG00000013759	INF2 (ENSGACG00000013761) ##7	ENSGACG00000013769	ENSGACG00000013780	zbtb1 (ENSGACG00000013781)	myh6 (ENSGACG00000013782)	pak6b (ENSGACG00000013785)	spint1b (ENSGACG00000013791)	ENSGACG00000013797	KIF26A (ENSGACG00000013799) ##10	ccr6a (ENSGACG00000013807)	cep43 (ENSGACG00000013808)	mboat2b (ENSGACG00000013813)
Lumpfish	MODERN SPECIES	16	ubr7 (ENSCLMG00005005110)	ENSCLMG00005005115	tmem251 (ENSCLMG00005005117)	TRIM50 (ENSCLMG00005005118)	ASB2 (ENSCLMG00005005123)	ENSCLMG00005005131	serpina10a (ENSCLMG00005005135)	xrcc3 (ENSCLMG00005005136) #17	BRF1 (ENSCLMG00005005142)	ENSCLMG00005005158	ENSCLMG00005005168	vipas39 (ENSCLMG00005005179)	ENSCLMG00005006958	cdc42bpb (ENSCLMG00005006974) #30	ENSCLMG00005007050	CKB (ENSCLMG00005007052) #22	ENSCLMG00005007063	ENSCLMG00005007064	ENSCLMG00005007066	ENSCLMG00005007067	zbtb1 (ENSCLMG00005007068)	myh6 (ENSCLMG00005007070)	PAK6 (ENSCLMG00005007073)	ENSCLMG00005007074	ENSCLMG00005007075	ENSCLMG00005007076	KIF26A (ENSCLMG00005007077) ##10	ccr6a (ENSCLMG00005007080)	cep43 (ENSCLMG00005007083)	mboat2b (ENSCLMG00005007087)	kidins220b (ENSCLMG00005007090)
Perciformes_a	ANCESTRAL SPECIES	43	ENSGT00940000176260	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000154746.a.b	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000164935.b	ENSGT00940000156521.b	ENSGT00940000159075.B ##10	ENSGT00940000161983.b	ENSGT01030000234667.b.f.a
Pike perch	MODERN SPECIES	105	tmem251 (ENSSLUG00000014405)	TRIM50 (ENSSLUG00000014414)	ASB2 (ENSSLUG00000014421)	ENSSLUG00000014433	ENSSLUG00000014495	ENSSLUG00000014508	ENSSLUG00000014515	xrcc3 (ENSSLUG00000014519) #17	brf1b (ENSSLUG00000014536)	ENSSLUG00000014596	ENSSLUG00000014619	vipas39 (ENSSLUG00000014664)	ENSSLUG00000014733	cdc42bpb (ENSSLUG00000014787) #30	prph2lb (ENSSLUG00000015040)	ckbb (ENSSLUG00000015046) #22	ENSSLUG00000015062	ENSSLUG00000015064	ENSSLUG00000015071	ENSSLUG00000015076 ##7	ENSSLUG00000015080	ENSSLUG00000015082	ENSSLUG00000015087	zbtb1 (ENSSLUG00000015094)	myh6 (ENSSLUG00000015132)	PAK6 (ENSSLUG00000015227)	ENSSLUG00000015238	ENSSLUG00000015242	ENSSLUG00000015254	ENSSLUG00000015269	ENSSLUG00000015277
Channel bull blenny	MODERN SPECIES	51	ENSCGOG00000003450	PPP4R4 (ENSCGOG00000003447)	ENSCGOG00000003446	ENSCGOG00000003444	xrcc3 (ENSCGOG00000003442) #17	ENSCGOG00000003435	ENSCGOG00000003434	vipas39 (ENSCGOG00000003353)	ENSCGOG00000003343	ENSCGOG00000003340	ENSCGOG00000003337	ENSCGOG00000003336	ENSCGOG00000003330	prph2lb (ENSCGOG00000003315)	ENSCGOG00000003313	ckbb (ENSCGOG00000002746) #22	ENSCGOG00000022156 #27	CEP170B (ENSCGOG00000022146)	ENSCGOG00000022143 ##7	ENSCGOG00000022141	ZBTB25 (ENSCGOG00000022138)	zbtb1 (ENSCGOG00000022137)	spint1b (ENSCGOG00000021918)	ENSCGOG00000021913	KIF26A (ENSCGOG00000021910) ##10
Eupecaria_C	ANCESTRAL SPECIES	46	ENSGT01030000234834	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000157058.k.k	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.l	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	52	ENSGT01030000234834	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00390000010349.a.a	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.l	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
European seabass	MODERN SPECIES	7	ENSDLAG00005029703	ENSDLAG00005026964	ENSDLAG00005005270	ENSDLAG00005027561	ENSDLAG00005016770	xrcc3 (ENSDLAG00005026522) #17	ENSDLAG00005007541	ENSDLAG00005007516	btbd6b (ENSDLAG00005007534)	ENSDLAG00005029750	ENSDLAG00005017890	ENSDLAG00005006178	ENSDLAG00005029551 #30	ENSDLAG00005029762	ENSDLAG00005027515	ENSDLAG00005004311 #22	ENSDLAG00005002426	ENSDLAG00005030208 #23	ENSDLAG00005031310	ENSDLAG00005013915	ENSDLAG00005014042	ENSDLAG00005016760 ##7	ENSDLAG00005029937	ENSDLAG00005031053	ENSDLAG00005010151	ENSDLAG00005027008	ENSDLAG00005013008	ENSDLAG00005015638	ENSDLAG00005015630	ENSDLAG00005006753	ENSDLAG00005013002
Large yellow croaker	MODERN SPECIES	67	TRIM50 (ENSLCRG00005018464)	vipas39 (ENSLCRG00005018474)	ENSLCRG00005018668	brf1b (ENSLCRG00005018679)	btbd6b (ENSLCRG00005018684)	ENSLCRG00005018686	xrcc3 (ENSLCRG00005018688) #17	serpina10a (ENSLCRG00005018689)	ENSLCRG00005018692	ASB2 (ENSLCRG00005018699)	ENSLCRG00005018700	ubr7 (ENSLCRG00005018701)	tmem251 (ENSLCRG00005018702)	cdc42bpb (ENSLCRG00005018773) #30	prph2lb (ENSLCRG00005022233)	ckbb (ENSLCRG00005001482) #22	ENSLCRG00005001579	ENSLCRG00005001586 #27	CEP170B (ENSLCRG00005001601)	ENSLCRG00005001630 ##7	ENSLCRG00005001638 ##7	PLEKHG3 (ENSLCRG00005001647)	spint1b (ENSLCRG00005001698)	pak6b (ENSLCRG00005001720)	myh6 (ENSLCRG00005001739)	ENSLCRG00005001766	zbtb1 (ENSLCRG00005001778)	ENSLCRG00005001784	ENSLCRG00005001795	ENSLCRG00005001808
Gilthead seabream	MODERN SPECIES	14	ENSSAUG00010003254	ENSSAUG00010003257	ccr6a (ENSSAUG00010003259)	ENSSAUG00010003261	cep43 (ENSSAUG00010003269)	ENSSAUG00010003288	mboat2b (ENSSAUG00010003310)	ENSSAUG00010003375	kidins220b (ENSSAUG00010003384)	ENSSAUG00010003400	ENSSAUG00010003405	allc (ENSSAUG00010003411)	ENSSAUG00010003478	ENSSAUG00010003481 #30	prph2lb (ENSSAUG00010003483)	ckbb (ENSSAUG00010003484) #22	ENSSAUG00010003493	ENSSAUG00010003496 #23	ENSSAUG00010003500 #27	ENSSAUG00010003507	ENSSAUG00010003512	ENSSAUG00010003515	CEP170B (ENSSAUG00010003518)
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Anabantaria	ANCESTRAL SPECIES	24	ENSGT00940000176260	ENSGT00390000017610.b	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT01100000263513.a.a.b.b.b.b.a.a.a.a.b	ENSGT00940000163655.b	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b
Climbing perch	MODERN SPECIES	15	ENSATEG00000008503	ENSATEG00000008484	ENSATEG00000008466 #17	ENSATEG00000026683	btbd6b (ENSATEG00000008447)	ENSATEG00000008425	ENSATEG00000008191	ENSATEG00000008118	ENSATEG00000008109	ENSATEG00000008077 #30	ENSATEG00000007973	ENSATEG00000028582	ENSATEG00000007549	ENSATEG00000007520	ENSATEG00000007516	CKB (ENSATEG00000007497) #22	MARK3 (ENSATEG00000006494) #23	ENSATEG00000014372	ENSATEG00000006389	ENSATEG00000026191 #27	ENSATEG00000006377	ENSATEG00000006034	ENSATEG00000004398 ##7	ENSATEG00000029310	ENSATEG00000005937	ENSATEG00000005928	ENSATEG00000005922	ENSATEG00000026941	ENSATEG00000005909	ENSATEG00000005527	ENSATEG00000005504
Siamese fighting fish	MODERN SPECIES	13	TRIM50 (ENSBSLG00000021576)	ENSBSLG00000021571	ENSBSLG00000021565	ENSBSLG00000021561	PPP4R4 (ENSBSLG00000021479)	ENSBSLG00000021463	xrcc3 (ENSBSLG00000021428) #17	btbd6b (ENSBSLG00000021418)	BRF1 (ENSBSLG00000021378)	ENSBSLG00000021363	vipas39 (ENSBSLG00000021154)	ENSBSLG00000020699	cdc42bpb (ENSBSLG00000020149) #30	ENSBSLG00000020096	prph2lb (ENSBSLG00000020082)	ckbb (ENSBSLG00000020003) #22	MARK3 (ENSBSLG00000018309) #23	ENSBSLG00000017930 #27	ENSBSLG00000017925	CEP170B (ENSBSLG00000017877)	PLEKHG3 (ENSBSLG00000017778)	ENSBSLG00000017596	ENSBSLG00000017583	pak6b (ENSBSLG00000016920)	ENSBSLG00000016875	myh6 (ENSBSLG00000016859)	zbtb1 (ENSBSLG00000016845)	ZBTB25 (ENSBSLG00000016839)	ENSBSLG00000016822	KIF26A (ENSBSLG00000016901) ##10	ENSBSLG00000016581
Zig-zag eel	MODERN SPECIES	30	ubr7 (ENSMAMG00000000940)	ENSMAMG00000000966	ENSMAMG00000001003	ENSMAMG00000001123	ENSMAMG00000001215	ENSMAMG00000001432	ENSMAMG00000001459	xrcc3 (ENSMAMG00000001490) #17	ENSMAMG00000001529	btbd6b (ENSMAMG00000001551)	ENSMAMG00000001569	ENSMAMG00000001606	ENSMAMG00000001931	ENSMAMG00000001707 #30	ENSMAMG00000001951	CKB (ENSMAMG00000001970) #22	ENSMAMG00000026768	MARK3 (ENSMAMG00000002003) #23	ENSMAMG00000002160 #27	ENSMAMG00000002184	ENSMAMG00000028327	ENSMAMG00000002264 ##7	ENSMAMG00000002290	ENSMAMG00000002326	ENSMAMG00000002333	ENSMAMG00000002352	ENSMAMG00000002362	ENSMAMG00000002367	zbtb1 (ENSMAMG00000002376)	ENSMAMG00000002380	ENSMAMG00000027061
Carangaria	ANCESTRAL SPECIES	18	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805
Pleuronectoidei	ANCESTRAL SPECIES	56	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00970000193712	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000157058.k	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B ##10	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000156714.b
Turbot	MODERN SPECIES	12	ENSSMAG00000033307	ENSSMAG00000023420	ENSSMAG00000034743	ENSSMAG00000026578	serpina10a (ENSSMAG00000036016)	ENSSMAG00000027652 #17	ENSSMAG00000027465	btbd6b (ENSSMAG00000024727)	ENSSMAG00000027159	ENSSMAG00000009673	ENSSMAG00000010292	ENSSMAG00000010681	ENSSMAG00000010407 #30	ENSSMAG00000010686	ENSSMAG00000024244	CKB (ENSSMAG00000010692) #22	MARK3 (ENSSMAG00000010713) #23	ENSSMAG00000010738 #27	ENSSMAG00000010772	ENSSMAG00000033215	ENSSMAG00000010826	ENSSMAG00000030711	ENSSMAG00000029128	ENSSMAG00000036007	zbtb1 (ENSSMAG00000026890)	ENSSMAG00000026065	ENSSMAG00000029617	ENSSMAG00000022158 ##10	ENSSMAG00000023241	ENSSMAG00000022841	mboat2b (ENSSMAG00000024083)
Carangaria_A	ANCESTRAL SPECIES	35	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.h	ENSGT00940000156521.b	ENSGT01030000236465	ENSGT01060000248856	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a
Seriola	ANCESTRAL SPECIES	86	ENSGT00390000007473	ENSGT00940000161467	ENSGT00940000155490.a.c.a	ENSGT00940000155490.a.c.b	ENSGT00510000047895	ENSGT00940000159462.a.b	ENSGT00930000151053 #17	ENSGT00940000163503.A.a.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00940000155144.m	ENSGT00390000013955	ENSGT00950000183136.a.b	ENSGT01030000234517.H.a #30	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.b #23	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000174804	ENSGT00730000111686.f	ENSGT00940000157058.k.h	ENSGT00940000155691.c.b ##7	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00980000198805	ENSGT00950000183116.b.a.b.a	ENSGT00940000157501	ENSGT00940000159887
Greater amberjack	MODERN SPECIES	105	ENSSDUG00000016882	ENSSDUG00000016860	ENSSDUG00000016838	ENSSDUG00000016796	ENSSDUG00000016741	xrcc3 (ENSSDUG00000016722) #17	ENSSDUG00000016671	btbd6b (ENSSDUG00000016647)	brf1b (ENSSDUG00000016618)	ENSSDUG00000016603	vipas39 (ENSSDUG00000016542)	ENSSDUG00000016528	cdc42bpb (ENSSDUG00000016488) #30	ENSSDUG00000016469	prph2lb (ENSSDUG00000016460)	ckbb (ENSSDUG00000016441) #22	MARK3 (ENSSDUG00000016373) #23	ENSSDUG00000016336 #27	ENSSDUG00000016323	ENSSDUG00000016313	CEP170B (ENSSDUG00000016213)	ENSSDUG00000016185 ##7	PLEKHG3 (ENSSDUG00000016163)	ENSSDUG00000016147	ENSSDUG00000016128	pak6b (ENSSDUG00000016115)	ENSSDUG00000016103	ENSSDUG00000016091	ENSSDUG00000016079	ENSSDUG00000016070	ENSSDUG00000016055
Yellowtail amberjack	MODERN SPECIES	3247	TRIM50 (ENSSLDG00000001012)	ENSSLDG00000001003	ENSSLDG00000000887	PPP4R4 (ENSSLDG00000000711)	ENSSLDG00000000688	ENSSLDG00000000685	xrcc3 (ENSSLDG00000000677) #17	ENSSLDG00000000593	btbd6b (ENSSLDG00000000569)	brf1b (ENSSLDG00000000494)	ENSSLDG00000000444	vipas39 (ENSSLDG00000000367)	ENSSLDG00000000347	cdc42bpb (ENSSLDG00000000105) #30	prph2lb (ENSSLDG00000025688)	ckbb (ENSSLDG00000025687) #22	MARK3 (ENSSLDG00000025686) #23	ENSSLDG00000025685 #27	ENSSLDG00000025684	ENSSLDG00000025683	CEP170B (ENSSLDG00000025682)	ENSSLDG00000025681 ##7
Barramundi perch	MODERN SPECIES	385	ENSLCAG00010017456	ENSLCAG00010017462	ENSLCAG00010017474	xrcc3 (ENSLCAG00010017476) #17	brf1b (ENSLCAG00010017485)	ENSLCAG00010017515	btbd6b (ENSLCAG00010017532)	ENSLCAG00010017533	vipas39 (ENSLCAG00010017620)	ENSLCAG00010017913	cdc42bpb (ENSLCAG00010017932) #30	ENSLCAG00010017956	ENSLCAG00010017957	ENSLCAG00010017960	prph2lb (ENSLCAG00010017963)	ckbb (ENSLCAG00010017966) #22	ENSLCAG00010017980	MARK3 (ENSLCAG00010017986) #23	ENSLCAG00010017996 #27	ENSLCAG00010018000	ENSLCAG00010018004	CEP170B (ENSLCAG00010018009)	ENSLCAG00010018014	INF2 (ENSLCAG00010018019) ##7	ENSLCAG00010018024	ENSLCAG00010018026	ENSLCAG00010018030	ZBTB25 (ENSLCAG00010018048)	zbtb1 (ENSLCAG00010018049)	ENSLCAG00010018052	ENSLCAG00010018057
Tiger tail seahorse	MODERN SPECIES	340	ENSHCOG00000008725	ENSHCOG00000008713	myo6a (ENSHCOG00000008698)	ENSHCOG00000008643	FILIP1 (ENSHCOG00000008600)	ENSHCOG00000008559	ENSHCOG00000008551	ENSHCOG00000008540	xrcc3 (ENSHCOG00000008533) #17	ENSHCOG00000008527	ENSHCOG00000008514	ENSHCOG00000008481	ENSHCOG00000008466	vipas39 (ENSHCOG00000008444)	cdc42bpb (ENSHCOG00000008423) #30	ckbb (ENSHCOG00000008329) #22	ENSHCOG00000008311	CEP170B (ENSHCOG00000008298)	ENSHCOG00000008285	spint1b (ENSHCOG00000008268)	psmb6 (ENSHCOG00000008258)	ENSHCOG00000008251	vsx2 (ENSHCOG00000008242)	ENSHCOG00000008207	abcd4 (ENSHCOG00000008159)	SGPP1 (ENSHCOG00000008121)	kcnh5a (ENSHCOG00000008109)	L3HYPDH (ENSHCOG00000008061)	daam1b (ENSHCOG00000008052)	ppp1r13bb (ENSHCOG00000007945) #15	eif2b2 (ENSHCOG00000007914)
Cod	MODERN SPECIES	13	ENSGMOG00000009208	btbd6b (ENSGMOG00000009315)	ENSGMOG00000009345	ENSGMOG00000002969	ENSGMOG00000023255	ENSGMOG00000029601	ENSGMOG00000002898 #30	ENSGMOG00000028387 #30	ENSGMOG00000028191 #30	ENSGMOG00000025722 #27	ENSGMOG00000024894	ENSGMOG00000017390 ##7	ENSGMOG00000032002	ENSGMOG00000002989 #8	ENSGMOG00000031651	ENSGMOG00000010070 #22	ENSGMOG00000029645	ENSGMOG00000032329	ENSGMOG00000003022	ENSGMOG00000037113	spint1b (ENSGMOG00000013234)	ENSGMOG00000023599	ENSGMOG00000027113	ENSGMOG00000020224	ENSGMOG00000025631	ENSGMOG00000022605	ENSGMOG00000015786	ENSGMOG00000015800	ENSGMOG00000023128	ENSGMOG00000012179	ENSGMOG00000036089
Protacanthopterygii	ANCESTRAL SPECIES	193															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000154862.x.a.b.a.b #23	ENSGT01030000234848	ENSGT00940000154862.y #23	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00390000016478.e #25	ENSGT01030000234613.b.a.a.c.b #27	ENSGT00940000164834.b	ENSGT01030000234517.H.a #30	ENSGT00940000156927	ENSGT00940000159071.y.b	ENSGT00940000167479	ENSGT00940000154598	ENSGT00390000015102.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	622															ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.g #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b.h #22	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478.e.a #25	ENSGT00940000154862.y.d #23	ENSGT00390000016478.e.b #25	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f #27	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e #30	ENSGT00940000156927.`b.a	ENSGT01030000234613.b.a.a.c.b.e #27
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000154805.b.g.e.a.u.a.a.a.a.d	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000159075.B ##10	ENSGT00940000163655.b	ENSGT01030000234848.a	ENSGT00950000182772.A.a.b.`b.b.g #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00390000016478.e.b #25	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f #27	ENSGT01030000234613.b.a.a.c.b.e #27	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e #30	ENSGT00940000156927.`b.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000009816.b
Salmo	ANCESTRAL SPECIES	52	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00950000183116.b.a.b.a.a	ENSGT00940000163520.A.a.a.a.b.b.b	ENSGT00940000159887.a	ENSGT00940000157501.e	ENSGT00940000159075.B ##10	ENSGT01100000266706	ENSGT00940000163655.b	ENSGT01030000234848.a	ENSGT00950000182772.A.a.b.`b.b.g #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00390000016478.e.b #25	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f #27	ENSGT01030000234613.b.a.a.c.b.e #27	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e #30	ENSGT00940000156927.`b.a	ENSGT00940000156927.`b.b	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000047945	ENSSSAG00000047958	ENSSSAG00000047965	ENSSSAG00000047972	ENSSSAG00000088306	ENSSSAG00000048014	ENSSSAG00000090445	ENSSSAG00000115691	ENSSSAG00000103170	ENSSSAG00000105968	ENSSSAG00000088891	ENSSSAG00000048064 ##10	ENSSSAG00000084611	ENSSSAG00000120835	ENSSSAG00000048358	CKB (ENSSSAG00000048236) #22	MARK3 (ENSSSAG00000048617) #23	IF5 (ENSSSAG00000061889) #25	ENSSSAG00000062187	tnfaip2a (ENSSSAG00000106959) #27	tnfaip2a (ENSSSAG00000062279) #27	LBH (ENSSSAG00000062440)	cdc42bpb (ENSSSAG00000040963) #30	ENSSSAG00000040165	ENSSSAG00000040391	ENSSSAG00000039498	ccdc85cb (ENSSSAG00000045488)	ccnk (ENSSSAG00000039406)	ENSSSAG00000085155	ENSSSAG00000075642	ENSSSAG00000073556
River trout	MODERN SPECIES	28	ENSSTUG00000025520	spint1b (ENSSTUG00000025538)	ppp1r14d (ENSSTUG00000025564)	ENSSTUG00000025572	pak6b (ENSSTUG00000025615)	myh6 (ENSSTUG00000025632)	ENSSTUG00000025646	ENSSTUG00000025650	ENSSTUG00000025667	ENSSTUG00000025739	zbtb1 (ENSSTUG00000025748)	KIF26A (ENSSTUG00000025769) ##10	ENSSTUG00000025888	ENSSTUG00000025899	prph2lb (ENSSTUG00000025904)	ckbb (ENSSTUG00000025914) #22	mark3b (ENSSTUG00000026094) #23	eif5 (ENSSTUG00000028811) #25	ENSSTUG00000028934	tnfaip2a (ENSSTUG00000028955) #27	ENSSTUG00000028993 #27	si:dkeyp-72h1.1 (ENSSTUG00000029000)	cdc42bpb (ENSSTUG00000029024) #30	ENSSTUG00000029185	ENSSTUG00000029200	ENSSTUG00000029488	ccdc85cb (ENSSTUG00000029911)	ccnk (ENSSTUG00000029917)	ENSSTUG00000029924	papola (ENSSTUG00000030211)	ak7a (ENSSTUG00000036501)
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000154805.b.g.e.a.u.a.a.a.a.d	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000159075.B ##10	ENSGT00940000163655.b	ENSGT01030000234848.a	ENSGT00950000182772.A.a.b.`b.b.g #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT00390000016478.e.b #25	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.e #27	ENSGT00940000156927.`b.b.a.a.a	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000009816.b	ENSGT00940000154209.a.a.h.b	ENSGT00940000156661.e	ENSGT00940000154209.a.b.a.g.a
Oncorhynchus_a	ANCESTRAL SPECIES	65	ENSGT00390000018199.a.e	ENSGT00390000003316.c.b.a.f.a	ENSGT00940000156891.a.b.c	ENSGT00730000111686.f	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00950000182985.a.a.b.a	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000167286	ENSGT00940000163520.A.a.a.a.b.b.a	ENSGT00940000157501.e	ENSGT00940000159887.a	ENSGT00940000159075.B ##10	ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.g #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT01030000234848.a	ENSGT00940000154862.y.d #23	ENSGT00390000016478.e.b #25	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.e #27	ENSGT01030000234517.H.a.e #30	ENSGT00940000156927.`b.a.d	ENSGT00940000159071.y.a.u.b.b	ENSGT00940000165223.o.a	ENSGT00940000167479.c.a	ENSGT00940000154598.c.a	ENSGT00390000015102.a.a	ENSGT00940000156048.e.a.b.a.a	ENSGT00390000009816.b
Coho salmon	MODERN SPECIES	3	ENSOKIG00005002172	PLEKHG3 (ENSOKIG00005002115)	ENSOKIG00005002066	ENSOKIG00005002043	ENSOKIG00005002024	ENSOKIG00005002003	ENSOKIG00005001971	myh6 (ENSOKIG00005001957)	ENSOKIG00005047138	ENSOKIG00005047122	ENSOKIG00005047112	ENSOKIG00005047108	KIF26A (ENSOKIG00005047078) ##10	ENSOKIG00005047056	ENSOKIG00005047050	ckbb (ENSOKIG00005047033) #22	MARK3 (ENSOKIG00005046912) #23	eif5 (ENSOKIG00005046854) #25	ENSOKIG00005046840	ENSOKIG00005046819 #27	ENSOKIG00005046812	ENSOKIG00005045073	ENSOKIG00005042636	polr3a (ENSOKIG00005042374)	QRFPR (ENSOKIG00005042320)	si:dkeyp-72h1.1 (ENSOKIG00005042301)	ENSOKIG00005042290	cdc42bpb (ENSOKIG00005041402) #30	ENSOKIG00005041128	ENSOKIG00005039927	ENSOKIG00005039544
Chinook salmon	MODERN SPECIES	29	erh (ENSOTSG00005001051)	paplnb (ENSOTSG00005001044)	ENSOTSG00005001036	PLEKHG3 (ENSOTSG00005001030)	spint1b (ENSOTSG00005001021)	ENSOTSG00005001015	ENSOTSG00005001011	pak6b (ENSOTSG00005001005)	myh6 (ENSOTSG00005001001)	ENSOTSG00005000997	zbtb1 (ENSOTSG00005000995)	ENSOTSG00005000994	KIF26A (ENSOTSG00005000983) ##10	prph2lb (ENSOTSG00005000974)	ENSOTSG00005000971	ckbb (ENSOTSG00005000965) #22	ENSOTSG00005000952 #23	eif5 (ENSOTSG00005000871) #25	ENSOTSG00005000867	tnfaip2a (ENSOTSG00005000836) #27	ENSOTSG00005000679	ENSOTSG00005000531	CCDC85C (ENSOTSG00005000516)	CCNK (ENSOTSG00005000512)	ENSOTSG00005000511	ENSOTSG00005000508	chrm5b (ENSOTSG00005000506)	emc7b (ENSOTSG00005000504)	katnbl1 (ENSOTSG00005000502)	THBS1 (ENSOTSG00005000501)	gpr176 (ENSOTSG00005000499)
Rainbow trout	MODERN SPECIES	29	paplnb (ENSOMYG00000004534)	ENSOMYG00000004507	ENSOMYG00000066911	ENSOMYG00000004426	ENSOMYG00000004330	ENSOMYG00000056790	ENSOMYG00000076150	ENSOMYG00000053095	ENSOMYG00000004222	ENSOMYG00000004200	ENSOMYG00000004170	ENSOMYG00000004040	ENSOMYG00000003990 ##10	ENSOMYG00000003876	ENSOMYG00000003848	CKB (ENSOMYG00000003805) #22	ENSOMYG00000075096	MARK3 (ENSOMYG00000003515) #23	eif5 (ENSOMYG00000003370) #25	ENSOMYG00000003242	tnfaip2a (ENSOMYG00000003176) #27	ENSOMYG00000065169	ENSOMYG00000077507	si:dkeyp-72h1.1 (ENSOMYG00000058003)	cdc42bpb (ENSOMYG00000003002) #30	ENSOMYG00000002119	ENSOMYG00000002874	ENSOMYG00000054358	ENSOMYG00000002390	ENSOMYG00000049257	ccdc85cb (ENSOMYG00000001879)
Huchen	MODERN SPECIES	5360																ckbb (ENSHHUG00000030888) #22	mark3b (ENSHHUG00000030999) #23
Salmoninae	ANCESTRAL SPECIES	622												ENSGT00940000163655.b	ENSGT00950000182772.A.a.b.`b.b.g #22	ENSGT00940000154862.x.a.b.a.a #23	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b.h #22	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478.e.a #25	ENSGT00940000154862.y.d #23	ENSGT00390000016478.e.b #25	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.b.a.a	ENSGT01030000234613.b.a.a.c.b.f #27	ENSGT00940000164834.b.e	ENSGT01030000234517.H.a.e #30	ENSGT00940000156927.`b.a	ENSGT01030000234613.b.a.a.c.b.e #27
Huchen	MODERN SPECIES	539								smek1 (ENSHHUG00000048028)	erh (ENSHHUG00000047994)	paplnb (ENSHHUG00000047985)	ENSHHUG00000047981	zbtb1 (ENSHHUG00000047977)	ENSHHUG00000047975	ENSHHUG00000047703	ENSHHUG00000047696	ckbb (ENSHHUG00000047612) #22	mark3b (ENSHHUG00000047152) #23	eif5 (ENSHHUG00000047069) #25
Salmoninae_a	ANCESTRAL SPECIES	104	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000173579	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h #22	ENSGT01030000234848.b	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478.e.a #25	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f #30	ENSGT00530000063867.a.a.db	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00390000009415.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h #22	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478.e.a #25	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f #30	ENSGT00530000063867.a.a.db	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000154045.b.d.a	ENSGT00940000161652.b.b.p.b.b	ENSGT00940000157701.k.b	ENSGT00940000156464.mb.a.b	ENSGT00940000156714.b.f
Atlantic salmon	MODERN SPECIES	25	xkr5a (ENSSSAG00000007629)	ENSSSAG00000114918	tram2 (ENSSSAG00000007615)	ENSSSAG00000007605	ENSSSAG00000100736	ENSSSAG00000032979	mycn (ENSSSAG00000107853)	smek1 (ENSSSAG00000002811)	erh (ENSSSAG00000003730)	ENSSSAG00000088042	paplnb (ENSSSAG00000094083)	ENSSSAG00000115651	zbtb1 (ENSSSAG00000103681)	ENSSSAG00000003760	MTHFD1 (ENSSSAG00000003941)	CKB (ENSSSAG00000007969) #22	ENSSSAG00000100701	ENSSSAG00000008124 #23	ENSSSAG00000104602	eif5 (ENSSSAG00000015636) #25	ENSSSAG00000094877	cdc42bpb (ENSSSAG00000022058) #30	ENSSSAG00000067479	ENSSSAG00000087136	ENSSSAG00000120792	ENSSSAG00000067588	ENSSSAG00000072133	ENSSSAG00000072139	ENSSSAG00000121038	ENSSSAG00000088329	sox11b (ENSSSAG00000072143)
River trout	MODERN SPECIES		SIM1 (ENSSTUG00000046997)	ENSSTUG00000046095	lin28b (ENSSTUG00000046034)	prep (ENSSTUG00000045834)	ENSSTUG00000045809	xkr5a (ENSSTUG00000045797)	tram2 (ENSSTUG00000045717)	ENSSTUG00000045687	mrpl19 (ENSSTUG00000045658)	mycn (ENSSTUG00000045646)	smek1 (ENSSTUG00000044510)	erh (ENSSTUG00000044468)	paplnb (ENSSTUG00000044428)	ENSSTUG00000044421	ENSSTUG00000039464	ckbb (ENSSTUG00000039323) #22	mark3b (ENSSTUG00000038826) #23	eif5 (ENSSTUG00000038697) #25	si:dkeyp-72h1.1 (ENSSTUG00000038664)	cdc42bpb (ENSSTUG00000037407) #30	si:dkey-177p2.6 (ENSSTUG00000037358)	cdca4 (ENSSTUG00000037357)	ENSSTUG00000037355	ahsa1a (ENSSTUG00000037323)	sel1l (ENSSTUG00000034678)	ENSSTUG00000034582	nudt14 (ENSSTUG00000034575)	sox11b (ENSSTUG00000034561)	ENSSTUG00000034552	ENSSTUG00000034533	id2b (ENSSTUG00000034522)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT00940000153556.A.l.b	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00390000018199.a.f	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h #22	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478.e.a #25	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f #30	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000154045.b.d.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00940000162441.j.b.a.b.b.a.a.b.b.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.a.b.a.a.a.b.a.a	ENSGT01030000234559.b	ENSGT00730000111078.d
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000019653	ENSOMYG00000019544	ENSOMYG00000019419	ENSOMYG00000019359	ENSOMYG00000019353	xkr5a (ENSOMYG00000019346)	ENSOMYG00000019196	ENSOMYG00000019154	mycn (ENSOMYG00000019114)	smek1 (ENSOMYG00000018278)	erh (ENSOMYG00000018223)	paplnb (ENSOMYG00000018193)	zbtb1 (ENSOMYG00000018187)	ENSOMYG00000018183	MTHFD1 (ENSOMYG00000017946)	CKB (ENSOMYG00000017756) #22	ENSOMYG00000017740	ENSOMYG00000016375 #23	ENSOMYG00000058917	ENSOMYG00000028310	eif5 (ENSOMYG00000016280) #25	ENSOMYG00000016261	cdc42bpb (ENSOMYG00000011129) #30	ENSOMYG00000010466	ENSOMYG00000066455	ENSOMYG00000010435	ENSOMYG00000008679	ENSOMYG00000007527	ENSOMYG00000007499	ENSOMYG00000007436	ENSOMYG00000066454
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000155610.o.a.b	ENSGT00940000153295.b.j.a	ENSGT00530000063426.b.b.j	ENSGT00940000154798.a.d.b.f	ENSGT00940000153556.A.l.b	ENSGT01070000253766.A.a.a.b.a.b.c	ENSGT00510000046470.a.b.e	ENSGT00940000154096.b.b.a.f	ENSGT00940000158432.d	ENSGT00990000211308	ENSGT00390000003316.c.b.a.f.b	ENSGT00940000156891.a.b.d	ENSGT00940000157501.f	ENSGT00940000159887.b	ENSGT00940000154746.a.b	ENSGT00950000182772.A.a.b.`b.b.h #22	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478.e.a #25	ENSGT00940000164834.b.f	ENSGT01030000234517.H.a.f #30	ENSGT00530000063867.a.b.m.b	ENSGT00950000183136.a.b.f	ENSGT00940000155144.n.t	ENSGT00940000156671.l.b.a	ENSGT00940000154045.b.d.a	ENSGT00940000155490.a.c.a.c.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00950000183169.A.a.a.a.b.a.b.a.b.a.a.b.a	ENSGT00940000162441.j.b.a.b.b.a.a.b.b.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.a.b.a.a.a.b.a.a	ENSGT01030000234559.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	22	sh3bp5la (ENSOTSG00005005685)	ENSOTSG00005000530	tnfb (ENSOTSG00005000469)	ENSOTSG00005000467	ENSOTSG00005000466	bag6 (ENSOTSG00005000463)	tspan13a (ENSOTSG00005000458)	ankmy2a (ENSOTSG00005000436)	sostdc1a (ENSOTSG00005000430)	MEOX2 (ENSOTSG00005000429)	agmo (ENSOTSG00005000286)	DGKB (ENSOTSG00005000283)	ENSOTSG00005000282	ENSOTSG00005000281	ENSOTSG00005000279	ckbb (ENSOTSG00005000276) #22	mark3b (ENSOTSG00005000274) #23	eif5 (ENSOTSG00005000268) #25	si:dkeyp-72h1.1 (ENSOTSG00005029386)	cdc42bpb (ENSOTSG00005028592) #30	cdca4 (ENSOTSG00005028591)	ENSOTSG00005028590	ENSOTSG00005028589	ahsa1a (ENSOTSG00005028580)	sel1l (ENSOTSG00005022290)	nudt14 (ENSOTSG00005022285)	ENSOTSG00005022283	ENSOTSG00005022282	ENSOTSG00005022280	ENSOTSG00005022279	ENSOTSG00005022277
Chinook salmon	MODERN SPECIES	2891																ckbb (ENSOTSG00005024160) #22	mark3b (ENSOTSG00005024169) #23	eif5 (ENSOTSG00005024173) #25	si:dkeyp-72h1.1 (ENSOTSG00005024279)	cdc42bpb (ENSOTSG00005024280) #30	cdca4 (ENSOTSG00005024956)	ENSOTSG00005024957	ahsa1a (ENSOTSG00005024958)	sel1l (ENSOTSG00005024966)	nudt14 (ENSOTSG00005032629)	ENSOTSG00005032630	ENSOTSG00005032631	ENSOTSG00005032632	ENSOTSG00005032707	ENSOTSG00005032709	ENSOTSG00005032710
Coho salmon	MODERN SPECIES	13	ENSOKIG00005018516	RUVBL1 (ENSOKIG00005018508)	xkr5a (ENSOKIG00005018502)	TRAM2 (ENSOKIG00005018456)	ENSOKIG00005018435	mycn (ENSOKIG00005018427)	ENSOKIG00005018312	erh (ENSOKIG00005018282)	paplnb (ENSOKIG00005018269)	ENSOKIG00005018255	zbtb1 (ENSOKIG00005018245)	ENSOKIG00005018243	ENSOKIG00005018239	MTHFD1 (ENSOKIG00005013727)	ENSOKIG00005029571	CKB (ENSOKIG00005029444) #22	ENSOKIG00005029432	MARK3 (ENSOKIG00005029324) #23	EIF5 (ENSOKIG00005029238) #25	ENSOKIG00005029213
Northern pike	MODERN SPECIES	22	zgc:173709 (ENSELUG00000016671)	sptlc1 (ENSELUG00000016744)	ROR2 (ENSELUG00000016826)	nfil3 (ENSELUG00000016858)	auh (ENSELUG00000016935)	syk (ENSELUG00000016990)	DIRAS2 (ENSELUG00000017020)	ENSELUG00000017059	LYZ (ENSELUG00000017112)	PAM (ENSELUG00000017536)	st8sia4 (ENSELUG00000017552)	ENSELUG00000017568	chd1 (ENSELUG00000017677)	tmem179aa (ENSELUG00000000705) #8	prph2lb (ENSELUG00000000711)	ckbb (ENSELUG00000017747) #22	mark3b (ENSELUG00000017834) #23	eif5 (ENSELUG00000017892) #25	tnfaip2a (ENSELUG00000017931) #27	si:dkeyp-72h1.1 (ENSELUG00000017949)	cdc42bpb (ENSELUG00000018094) #30	cyp46a1.3 (ENSELUG00000018130)	ccdc85cb (ENSELUG00000018846)	ccnk (ENSELUG00000018878)	ENSELUG00000018914	papola (ENSELUG00000018972)	ACTA1 (ENSELUG00000019066)	ENSELUG00000019201	SCG5 (ENSELUG00000019157)	GREM1 (ENSELUG00000029656)	FMN1 (ENSELUG00000019232)
Otomorpha	ANCESTRAL SPECIES	380		ENSGT00940000156568.q	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a.c.b #15	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712
Otophysi	ANCESTRAL SPECIES	12						ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478.c.b #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b.g #28	ENSGT01030000234613.b.a.b.h #28	ENSGT00940000164834.a	ENSGT00940000153463.a.c.b #15	ENSGT01060000248685	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb
Characiphysae	ANCESTRAL SPECIES	38	ENSGT00390000011892	ENSGT01100000263524.C	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #23	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT01030000234848	ENSGT00940000153463.a.c.b #15	ENSGT01100000263794	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.cb	ENSGT00940000165916.e.b	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00530000063876.a	ENSGT00940000159420	ENSGT00390000000709
Channel catfish	MODERN SPECIES	17	Mut (ENSIPUG00000018835)	opn8b (ENSIPUG00000018819)	runx2b (ENSIPUG00000018779)	clic5b (ENSIPUG00000018758)	mark3b (ENSIPUG00000018616) #23	DAAM1 (ENSIPUG00000018404)	l3hypdh (ENSIPUG00000018376)	ENSIPUG00000018352	ENSIPUG00000018321	esr2a (ENSIPUG00000018308)	jag2 (ENSIPUG00000018128)	nudt14 (ENSIPUG00000018103)	btbd6b (ENSIPUG00000017933)	brf1b (ENSIPUG00000017884)	ENSIPUG00000017835	CKB (ENSIPUG00000017754) #22	ppp1r13b (ENSIPUG00000017609) #15	atp5mj (ENSIPUG00000017590)	ENSIPUG00000017584	rtn1b (ENSIPUG00000017525)	ppm1ab (ENSIPUG00000017490)	six6b (ENSIPUG00000017480)	six1b (ENSIPUG00000017473)	six4b (ENSIPUG00000017456)	Prkch (ENSIPUG00000017377)	hif1ab (ENSIPUG00000017139)	snapc1a (ENSIPUG00000017089)	SGPP1 (ENSIPUG00000017055)	PPP2R5E (ENSIPUG00000016934)	rhoj (ENSIPUG00000016909)	kcnh5a (ENSIPUG00000016865)
Characiphysae_b	ANCESTRAL SPECIES	39	ENSGT01100000263524.D.d	ENSGT00940000166083	ENSGT00940000156406.b	ENSGT00940000154862.x.a.b #23	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.pb.a	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053 #17	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000153463.a.c.b #15	ENSGT01060000248685	ENSGT00390000002089.b #12	ENSGT00940000156568.q	ENSGT01100000263794	ENSGT00940000174626	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.b	ENSGT00940000165916.e.b	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00530000063876.a
Electric eel	MODERN SPECIES	172										jag2b (ENSEEEG00000008094)	nudt14 (ENSEEEG00000008083)	btbd6b (ENSEEEG00000008080)	brf1b (ENSEEEG00000008079)	xrcc3 (ENSEEEG00000008076) #17	ENSEEEG00000008074	ckbb (ENSEEEG00000007997) #22	ppp1r13bb (ENSEEEG00000007989) #15	ENSEEEG00000007982	ndc80 (ENSEEEG00000007974)	ENSEEEG00000007971	ttc8 (ENSEEEG00000007880)	UBR7 (ENSEEEG00000007876)	BTBD7 (ENSEEEG00000007873)	ENSEEEG00000007872	asb2b (ENSEEEG00000007871)	OTUB2 (ENSEEEG00000007870)	DDX24 (ENSEEEG00000007868)	SERPINA10 (ENSEEEG00000007863)	atxn3 (ENSEEEG00000007826)	ENSEEEG00000007824	fam98b (ENSEEEG00000007822)
Characoidei	ANCESTRAL SPECIES	21												ENSGT00940000155720.c.a	ENSGT00390000010349.a.a	ENSGT00930000151053 #17	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000153463.a.c.b #15	ENSGT01060000248685	ENSGT00390000002089.b #12	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.a	ENSGT00940000165916.e.a	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e	ENSGT00940000156540.b
Red-bellied piranha	MODERN SPECIES	170														nudt14 (ENSPNAG00000006493)	jag2b (ENSPNAG00000028481)	ckbb (ENSPNAG00000028315) #22	ENSPNAG00000028271	ppp1r13bb (ENSPNAG00000028253) #15	atp5mj (ENSPNAG00000028169)	ENSPNAG00000028152 #12	ENSPNAG00000028121	ppm1ab (ENSPNAG00000005168)	six6b (ENSPNAG00000028053)	six1b (ENSPNAG00000028036)	six4b (ENSPNAG00000004294)	prkchb (ENSPNAG00000028009)	hif1ab (ENSPNAG00000004279)	snapc1a (ENSPNAG00000027851)	SGPP1 (ENSPNAG00000027831)	ppp2r5ea (ENSPNAG00000004260)	rhoj (ENSPNAG00000027700)
Mexicana tetra	MODERN SPECIES	18	psma8 (ENSAMXG00000038711)	ENSAMXG00000035866	clic5b (ENSAMXG00000035157)	mark3b (ENSAMXG00000001388) #23	daam1b (ENSAMXG00000001378)	L3HYPDH (ENSAMXG00000032989)	nudt14 (ENSAMXG00000029131)	jag2b (ENSAMXG00000020545)	esr2a (ENSAMXG00000036234)	ENSAMXG00000029675	ENSAMXG00000038470	btbd6b (ENSAMXG00000036054)	brf1b (ENSAMXG00000020489)	xrcc3 (ENSAMXG00000020479) #17	ENSAMXG00000032659	ckbb (ENSAMXG00000001460) #22	ppp1r13bb (ENSAMXG00000020459) #15	ENSAMXG00000034131	ENSAMXG00000020448 #12	rtn1b (ENSAMXG00000039324)	ppm1ab (ENSAMXG00000041890)	six6b (ENSAMXG00000034914)	six1b (ENSAMXG00000019354)	six4b (ENSAMXG00000019352)	prkchb (ENSAMXG00000019350)	hif1ab (ENSAMXG00000019342)	ENSAMXG00000035283	SGPP1 (ENSAMXG00000032515)	ppp2r5ea (ENSAMXG00000030264)	rhoj (ENSAMXG00000043729)	kcnh5a (ENSAMXG00000019312)
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00940000156710	ENSGT00500000044920	ENSGT00390000005261	ENSGT00940000157580.a.a	ENSGT00510000048726	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a.a.b	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00940000153463.a.c.b #15	ENSGT01060000248685	ENSGT00940000174626.b	ENSGT00940000155077.u	ENSGT00940000154832.db.a	ENSGT00940000160091	ENSGT00940000156487.bb.b	ENSGT00940000165916.f	ENSGT00390000018691.d	ENSGT00940000158836.a.b	ENSGT01030000234620.a.b.a.k	ENSGT00940000159098.e.b	ENSGT00940000156540.b	ENSGT00940000161329.c	ENSGT00940000160303.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	121	ENSGT00940000156710.z.a	ENSGT00500000044920.d	ENSGT00390000005261.c.b	ENSGT00940000157580.a.a.a	ENSGT00510000048726.c	ENSGT00940000156452.a.a.c	ENSGT00390000002032	ENSGT00950000182996.b.a.a.b.d.a.f.b.b.a	ENSGT00940000154656.ob.b.d	ENSGT00940000156116.B.b	ENSGT00940000164854.b.f.a.a.b	ENSGT00940000154045.b.e.a	ENSGT00390000010349.a.a.a.b.b	ENSGT00940000155720.c.a.d	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b.i #22	ENSGT00940000153463.a.c.b.a #15	ENSGT01100000263794.b	ENSGT00390000002089.b #12	ENSGT00940000155077.u.a	ENSGT00940000154832.db.a.b	ENSGT00940000160091.f.b.b	ENSGT00940000156487.bb.a.b	ENSGT00940000165916.e.a.a	ENSGT00940000158220.p.b	ENSGT00940000156774.ib.a	ENSGT00390000018691.d	ENSGT00940000158836.a.b.b	ENSGT01030000234620.a.b.a.k.b	ENSGT00940000159098.e.b.b	ENSGT00940000156540.b.a
Cyprininae_a	ANCESTRAL SPECIES	177											ENSGT00940000164854.b.f.a.a.b	ENSGT00940000154045.b.e.a	ENSGT00390000010349.a.a.a.b.b	ENSGT00940000155720.c.a.d	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b.i #22	ENSGT00940000153463.a.c.b.a #15	ENSGT01100000263794.b	ENSGT00940000155077.u.a	ENSGT00940000154832.db.a.b	ENSGT00940000160091.f.b.b	ENSGT00940000156487.bb.a.b	ENSGT00940000165916.e.a.a	ENSGT00940000158220.p.b	ENSGT00940000156774.ib.a	ENSGT00390000018691.d	ENSGT00940000158836.a.b.b	ENSGT01030000234620.a.b.a.k.b	ENSGT00940000159098.e.b.b	ENSGT00940000156540.b.a	ENSGT00940000157269.a.a.s.b
Common carp reference	MODERN SPECIES	34	tmem165 (ENSCCRG00000064973)	clocka (ENSCCRG00000003591)	ENSCCRG00000075492	nmu (ENSCCRG00000001225)	daam1b (ENSCCRG00000033411)	ENSCCRG00000062727	ENSCCRG00000033523	ENSCCRG00000002648	ENSCCRG00000066797	esr2a (ENSCCRG00000006684)	jag2b (ENSCCRG00000007251)	nudt14 (ENSCCRG00000074497)	ENSCCRG00000024274	btbd6b (ENSCCRG00000024293)	xrcc3 (ENSCCRG00000024286) #17	ckbb (ENSCCRG00000072264) #22	ppp1r13bb (ENSCCRG00000024077) #15	ENSCCRG00000073879	ENSCCRG00000022324	rtn1b (ENSCCRG00000008020)	ppm1ab (ENSCCRG00000057816)	six6b (ENSCCRG00000082349)	six1b (ENSCCRG00000079734)	six4b (ENSCCRG00000053055)	prkchb (ENSCCRG00000056510)	hif1ab (ENSCCRG00000010974)	snapc1a (ENSCCRG00000012742)	ENSCCRG00000012746	ppp2r5ea (ENSCCRG00000013038)	rhoj (ENSCCRG00000067801)	kcnh5a (ENSCCRG00000013911)
Golden-line barbel	MODERN SPECIES	110													btbd6b (ENSSGRG00000032117)	brf1b (ENSSGRG00000032116)	xrcc3 (ENSSGRG00000032115) #17	ckbb (ENSSGRG00000031468) #22	ppp1r13bb (ENSSGRG00000031387) #15	ENSSGRG00000031381	rtn1b (ENSSGRG00000031379)	ppm1ab (ENSSGRG00000031363)	six6b (ENSSGRG00000031360)	six1b (ENSSGRG00000031356)	six4b (ENSSGRG00000031355)	prkchb (ENSSGRG00000031273)	hif1ab (ENSSGRG00000030375)	snapc1a (ENSSGRG00000030355)	ENSSGRG00000030354	ppp2r5ea (ENSSGRG00000030332)	rhoj (ENSSGRG00000030331)	kcnh5a (ENSSGRG00000030329)	ptk2bb (ENSSGRG00000029904)
Goldfish	MODERN SPECIES	12	enpp5 (ENSCARG00000013541)	fam167ab (ENSCARG00000013544)	ccm2 (ENSCARG00000013551)	xkr6b (ENSCARG00000013592)	mtmr9 (ENSCARG00000013598)	tdh (ENSCARG00000013607)	pinx1 (ENSCARG00000013617)	sox7 (ENSCARG00000013623)	ENSCARG00000013629	ENSCARG00000013637	ENSCARG00000013802	nudt14 (ENSCARG00000013806)	brf1b (ENSCARG00000013813)	btbd6b (ENSCARG00000013828)	xrcc3 (ENSCARG00000013838) #17	ckbb (ENSCARG00000013868) #22	ppp1r13bb (ENSCARG00000013976) #15	ENSCARG00000015508	RD3L (ENSCARG00000015509) #12	rtn1b (ENSCARG00000015516)	ppm1ab (ENSCARG00000015535)	six6b (ENSCARG00000015540)	six1b (ENSCARG00000015546)	six4b (ENSCARG00000015549)	prkchb (ENSCARG00000015562)	hif1ab (ENSCARG00000015653)	snapc1a (ENSCARG00000018630)	SGPP1 (ENSCARG00000018644)	ppp2r5ea (ENSCARG00000018693)	RHOJ (ENSCARG00000020157)	kcnh5a (ENSCARG00000020186)
Cyprininae	ANCESTRAL SPECIES	101	ENSGT00940000155626.ld.a.a	ENSGT00940000156710.z.b	ENSGT00500000044920.c	ENSGT00390000005261.d	ENSGT00940000157580.a.a.b	ENSGT00510000048726.d	ENSGT00940000156452.a.a.d	ENSGT00940000154656.ob.b.c.b	ENSGT00940000156116.B.a	ENSGT00940000164854.b.f.b	ENSGT00940000166988	ENSGT00390000010349.a.a.b	ENSGT00940000155720.c.a.c	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a.a.b.a	ENSGT00950000182772.A.a.b.`b.b.j #22	ENSGT00940000153463.a.c.b.b #15	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000174626.a	ENSGT00940000155077.u.b	ENSGT00940000154832.db.a.a	ENSGT00940000160091.f.b.a	ENSGT00940000156487.bb.a.a	ENSGT00940000165916.e.a.b	ENSGT00940000158220.p.a	ENSGT00940000156774.ib.b	ENSGT00940000158836.a.b.a	ENSGT01030000234620.a.b.a.k.a	ENSGT00940000159098.e.b.a.a	ENSGT00940000156540.b.b
Cyprininae_a	ANCESTRAL SPECIES	34	ENSGT00940000155626.ld.a.a	ENSGT00940000156710.z.b	ENSGT00500000044920.c	ENSGT00390000005261.d	ENSGT00940000157580.a.a.b	ENSGT00510000048726.d	ENSGT00940000156452.a.a.d	ENSGT00940000154656.ob.b.c.a	ENSGT00940000156116.B.a	ENSGT00940000164854.b.f.b	ENSGT00940000166988	ENSGT00390000010349.a.a.b	ENSGT00940000155720.c.a.c	ENSGT00940000163503.A.a.b	ENSGT00390000010349.a.a.a.b.a	ENSGT00950000182772.A.a.b.`b.b.j #22	ENSGT00940000153463.a.c.b.b #15	ENSGT01100000263794.a	ENSGT00940000174626.b	ENSGT00940000155077.u.b	ENSGT00940000154832.db.a.a	ENSGT00940000160091.f.b.a	ENSGT00940000156487.bb.a.a	ENSGT00940000165916.e.a.b	ENSGT00940000158220.p.a	ENSGT00940000156774.ib.b	ENSGT00940000158836.a.b.a	ENSGT01030000234620.a.b.a.k.a	ENSGT00940000159098.e.b.a.a	ENSGT00940000156540.b.b	ENSGT00940000157269.a.a.s.a
Common carp reference	MODERN SPECIES	28	clocka (ENSCCRG00000023096)	nmu (ENSCCRG00000015667)	daam1b (ENSCCRG00000036171)	ENSCCRG00000070276	ENSCCRG00000065747	ENSCCRG00000076845	ENSCCRG00000009170	esr2a (ENSCCRG00000021944)	jag2b (ENSCCRG00000022420)	ENSCCRG00000055228	nudt14 (ENSCCRG00000076961)	btbd6b (ENSCCRG00000030019)	ENSCCRG00000030013	ENSCCRG00000030004	brf1b (ENSCCRG00000055583)	ckbb (ENSCCRG00000023971) #22	ppp1r13bb (ENSCCRG00000027331) #15	ENSCCRG00000008044	rtn1b (ENSCCRG00000012689)	ppm1ab (ENSCCRG00000012703)	six6b (ENSCCRG00000080206)	six1b (ENSCCRG00000012712)	six4b (ENSCCRG00000012164)	prkchb (ENSCCRG00000054998)	hif1ab (ENSCCRG00000012389)	ENSCCRG00000012973	ppp2r5ea (ENSCCRG00000012775)	rhoj (ENSCCRG00000078732)	kcnh5a (ENSCCRG00000011674)	ptk2bb (ENSCCRG00000044551)	ENSCCRG00000003040
Golden-line barbel	MODERN SPECIES	720						ENSSGRG00000020733	esr2a (ENSSGRG00000020682)	jag2b (ENSSGRG00000019011)	ENSSGRG00000018975	ENSSGRG00000018973	ENSSGRG00000018969	btbd6b (ENSSGRG00000018967)	brf1b (ENSSGRG00000018960)	ENSSGRG00000018957	xrcc3 (ENSSGRG00000018956) #17	ckbb (ENSSGRG00000018336) #22	ppp1r13bb (ENSSGRG00000017666) #15	ENSSGRG00000017616	ENSSGRG00000017614	rtn1b (ENSSGRG00000017537)	ppm1ab (ENSSGRG00000017535)
Goldfish	MODERN SPECIES	39	ENSCARG00000022525	ENSCARG00000022530	ENSCARG00000022534	ENSCARG00000022542	ENSCARG00000022546	ENSCARG00000022554	ENSCARG00000022559	ENSCARG00000022566	esr2a (ENSCARG00000022578)	jag2b (ENSCARG00000022626)	nudt14 (ENSCARG00000022714)	ENSCARG00000022727	brf1b (ENSCARG00000022748)	btbd6b (ENSCARG00000022849)	ENSCARG00000022857	ckbb (ENSCARG00000022889) #22	ppp1r13bb (ENSCARG00000022933) #15	ENSCARG00000023437	ENSCARG00000023440	rtn1b (ENSCARG00000023450)	ppm1ab (ENSCARG00000023501)	six6b (ENSCARG00000023510)	six1b (ENSCARG00000023531)	six4b (ENSCARG00000023547)	prkchb (ENSCARG00000023575)	hif1ab (ENSCARG00000023893)	SGPP1 (ENSCARG00000026369)	ppp2r5ea (ENSCARG00000026374)	ENSCARG00000026394	ENSCARG00000026400	ENSCARG00000026411
Zebrafish	MODERN SPECIES	12	kita (ENSDARG00000043317)	kdr (ENSDARG00000017321)	srd5a3 (ENSDARG00000043307)	tmem165 (ENSDARG00000034600)	clocka (ENSDARG00000011703)	nmu (ENSDARG00000043299)	daam1b (ENSDARG00000009689)	syne2a (ENSDARG00000030107)	esr2a (ENSDARG00000016454)	jag2b (ENSDARG00000021389)	nudt14 (ENSDARG00000062335)	ENSDARG00000094224	btbd6b (ENSDARG00000032369)	brf1b (ENSDARG00000005002)	xrcc3 (ENSDARG00000017928) #17	ckbb (ENSDARG00000043257) #22	ppp1r13bb (ENSDARG00000009142) #15	atp5mj (ENSDARG00000092873)	ENSDARG00000091135	rtn1b (ENSDARG00000021143)	ENSDARG00000092770	ppm1ab (ENSDARG00000043250)	six6b (ENSDARG00000031316)	six1b (ENSDARG00000026473)	six4b (ENSDARG00000031983)	prkchb (ENSDARG00000043243)	hif1ab (ENSDARG00000034293)	snapc1a (ENSDARG00000029569)	ENSDARG00000079369	ppp2r5ea (ENSDARG00000015474)	rhoj (ENSDARG00000020250)
Clupeiformes	ANCESTRAL SPECIES	208	ENSGT00940000154832.db.a	ENSGT00940000155077.u	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a.c.b #15	ENSGT00940000156452.a.a	ENSGT00390000002032	ENSGT00940000154656.ob.b	ENSGT00940000156116.B	ENSGT00940000164854.b.f	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.c.a	ENSGT00940000163503.A.a.b	ENSGT00930000151053 #17	ENSGT00950000182772.A.a.b.`b.b #22	ENSGT00970000193712	ENSGT00940000154862.x.a.b #23	ENSGT00940000156406.b	ENSGT00940000166083	ENSGT01100000263524.D.d	ENSGT01100000263524.C	ENSGT00390000011892	ENSGT00940000153311.a.b.b	ENSGT00390000001660	ENSGT00390000005318.b.b.a	ENSGT00520000055567.a.b
Atlantic herring	MODERN SPECIES	6	atp5mj (ENSCHAG00000016255)	ppp1r13bb (ENSCHAG00000015677) #15	daam1b (ENSCHAG00000015238)	L3HYPDH (ENSCHAG00000015203)	ENSCHAG00000015009	esr2a (ENSCHAG00000014970)	jag2b (ENSCHAG00000013621)	nudt14 (ENSCHAG00000013575)	ENSCHAG00000013527	btbd6b (ENSCHAG00000013494)	ENSCHAG00000013429	brf1b (ENSCHAG00000013246)	xrcc3 (ENSCHAG00000013229) #17	ENSCHAG00000013223	ENSCHAG00000013202	ckbb (ENSCHAG00000013096) #22	mark3b (ENSCHAG00000010879) #23	clic5b (ENSCHAG00000010764)	runx2b (ENSCHAG00000010414)	opn8a (ENSCHAG00000010336)	ENSCHAG00000010115	ENSCHAG00000010059	ENSCHAG00000010038	ccl38a.4 (ENSCHAG00000010031)	ENSCHAG00000010001	ENSCHAG00000009978	stum (ENSCHAG00000009964)	ITPKB (ENSCHAG00000009662)	coq8aa (ENSCHAG00000009242)	ENSCHAG00000009219	ENSCHAG00000009192
Denticle herring	MODERN SPECIES	5	ppm1ab (ENSDCDG00000031717)	rtn1b (ENSDCDG00000031731)	ENSDCDG00000031734 #12	atp5mj (ENSDCDG00000031737)	ppp1r13bb (ENSDCDG00000031797) #15	ENSDCDG00000032589	daam1b (ENSDCDG00000032594)	L3HYPDH (ENSDCDG00000032657)	ENSDCDG00000032659	esr2a (ENSDCDG00000032666)	jag2b (ENSDCDG00000032719)	nudt14 (ENSDCDG00000032725)	brf1b (ENSDCDG00000032728)	btbd6b (ENSDCDG00000032750)	xrcc3 (ENSDCDG00000032752) #17	ckbb (ENSDCDG00000032753) #22	ENSDCDG00000032754	mark3b (ENSDCDG00000032789) #23	clic5b (ENSDCDG00000033549)	runx2b (ENSDCDG00000033553)	opn8a (ENSDCDG00000033557)	opn8b (ENSDCDG00000033560)	mmut (ENSDCDG00000033574)	fkbp1b (ENSDCDG00000033957)	wdcp (ENSDCDG00000003187)	mfsd2b (ENSDCDG00000003217)	UBXN2A (ENSDCDG00000003415)	rsph9 (ENSDCDG00000003423)	mrps18a (ENSDCDG00000003430)	vegfab (ENSDCDG00000003439)	naga (ENSDCDG00000003459)
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.ab #22
Euteleosteomorpha	ANCESTRAL SPECIES	26	ENSGT00730000111179.b	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.ab #22	ENSGT00940000154862.x.b #23	ENSGT00940000154862.x.a.b.a.b #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834.a	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00950000183136.a.b	ENSGT00390000013955	ENSGT00940000155144.m	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000156671
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.ab #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.b.ab #22
Huchen	MODERN SPECIES	8765																ENSHHUG00000012880 #22
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00940000155720.c.b	ENSGT00390000010349.a.b	ENSGT00940000155720.d	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.ab #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00990000210253	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.ab #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00940000163336	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT01030000234620.a.b.a	ENSGT00940000156540.a	ENSGT00730000111179.b	ENSGT00940000154656.pb	ENSGT00940000176966	ENSGT00940000154656.ob.a	ENSGT00940000156116.A	ENSGT00940000164854.a	ENSGT00390000010349.a.b	ENSGT00940000155720.c.b	ENSGT00940000159639 #16	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b.ab #22	ENSGT01030000234848	ENSGT00950000182772.A.a.b.`b.a #22	ENSGT00940000154862.x.b #23	ENSGT00390000016478 #25	ENSGT00390000012669	ENSGT01050000245132	ENSGT01030000234613.b.a.a.c.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000168728	ENSGT00940000165073.a.b.b.b.a.b	ENSGT00530000063867.a.a	ENSGT00530000063867.a.b	ENSGT00940000155144.n	ENSGT00390000012424.b	ENSGT00940000154718
Tiger tail seahorse	MODERN SPECIES	43	traf3 (ENSHCOG00000021113)	rcor1 (ENSHCOG00000021111) #33	ENSHCOG00000021110	ENSHCOG00000021107 #34	ENSHCOG00000021106 #36	ENSHCOG00000021104 #35	dkc1 (ENSHCOG00000021099)	ENSHCOG00000021094	btbd6a (ENSHCOG00000021090)	ENSHCOG00000021089	zfyve21 (ENSHCOG00000021085) #16	klc1a (ENSHCOG00000000881) #18	coa8 (ENSHCOG00000000883) #20	bag5 (ENSHCOG00000000886) #19	trmt61a (ENSHCOG00000000889) #21	CKB (ENSHCOG00000000893) #22	ENSHCOG00000000895	ENSHCOG00000000896 #23	ENSHCOG00000000039 #23	eif5 (ENSHCOG00000000904) #25	vps29 (ENSHCOG00000000908)	pgrmc2 (ENSHCOG00000000911)	ENSHCOG00000000918	ENSHCOG00000000923	ahsa1b (ENSHCOG00000000941)	cdca4 (ENSHCOG00000000948)	si:dkey-177p2.6 (ENSHCOG00000000950)	ENSHCOG00000000956	ENSHCOG00000000961	ENSHCOG00000000041 #28	ENSHCOG00000000977 #27
Elephant shark	MODERN SPECIES	1494	tmem179aa (ENSCMIG00000013526) #8	KIF26A (ENSCMIG00000013532) #10	ENSCMIG00000013537	tdrd9 (ENSCMIG00000013578) #13	aspg (ENSCMIG00000013645) #11	ENSCMIG00000013647	RD3L (ENSCMIG00000013650) #12	atp5mj (ENSCMIG00000013653)	ppp1r13bb (ENSCMIG00000013665) #15	zfyve21 (ENSCMIG00000013690) #16	xrcc3 (ENSCMIG00000013699) #17	KLC1 (ENSCMIG00000013712) #18	coa8 (ENSCMIG00000013723) #20	bag5 (ENSCMIG00000013724) #19	trmt61a (ENSCMIG00000013726) #21	ckba (ENSCMIG00000013738) #22	ENSCMIG00000013762	mark3a (ENSCMIG00000014031) #23	eif5 (ENSCMIG00000014528) #25	ENSCMIG00000014541 #27	ENSCMIG00000014547 #28	ENSCMIG00000014554	cdc42bpb (ENSCMIG00000014601) #30	ENSCMIG00000014649 #31	TRAF3 (ENSCMIG00000014656) #32	rcor1 (ENSCMIG00000014664) #33	ANKRD9 (ENSCMIG00000014685)	tecpr2 (ENSCMIG00000014694) #34	cinp (ENSCMIG00000014707) #35	ENSCMIG00000014716 #36	ENSCMIG00000014719
Cyclostomata	ANCESTRAL SPECIES	672																ENSGT00950000182772.A.a.b #22	ENSGT00940000154862.ab.b #23
Hagfish	MODERN SPECIES	607																ckbb (ENSEBUG00000002924) #22	MARK3 (ENSEBUG00000010460) #23	ENSEBUG00000003226	ENSEBUG00000013959	ENSEBUG00000006752	ENSEBUG00000016687	tmem229b (ENSEBUG00000017002)	ENSEBUG00000016975	ENSEBUG00000010046	ENSEBUG00000013205	paf1 (ENSEBUG00000003008)	ENSEBUG00000000434	ENSEBUG00000001099	ENSEBUG00000008343	ENSEBUG00000009709	ENSEBUG00000001230
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	13	ENSGT00510000048283.d #8	ENSGT00940000159075.A #10	ENSGT00390000001610 #11	ENSGT00940000157035 #13	ENSGT00390000002089.b #12	ENSGT01060000248685	ENSGT00940000153463.a #15	ENSGT00940000159639 #16	ENSGT00930000151053 #17	ENSGT00940000155555 #18	ENSGT00390000008212 #20	ENSGT00940000158888 #19	ENSGT00940000154239.a #21	ENSGT00950000182772.A.a.b #22	ENSGT01100000265079	ENSGT00950000182772.A.a.a ##22	ENSGT00940000154862 #23	ENSGT00390000016478 #25	ENSGT01030000234613.b.a.a #27	ENSGT01030000234613.b.a.b #28	ENSGT00940000164834	ENSGT01030000234517.H.a #30	ENSGT00390000007463 #31	ENSGT00940000160538 #32	ENSGT00940000155654 #33	ENSGT00940000157283 #34	ENSGT00390000015784 #35	ENSGT00390000002751 #36	ENSGT00390000001205.b	ENSGT00940000153887.A	ENSGT00940000157826
Elephant shark	MODERN SPECIES	2795																ckmb (ENSCMIG00000004868) ##22
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	DUPLICATION
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.a ##22
Salmoninae	ANCESTRAL SPECIES	348												ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000008610.a.b.b.b	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d	ENSGT00940000156536.e.a.h	ENSGT00390000009497.a.d	ENSGT00940000156648.c.a.b
Huchen	MODERN SPECIES	264	HSPA8 (ENSHHUG00000051052)	zpr1 (ENSHHUG00000051004)	h2ax1 (ENSHHUG00000050985)	hyou1 (ENSHHUG00000050786)	vps11 (ENSHHUG00000050754)	ift46 (ENSHHUG00000050741)	BBX (ENSHHUG00000050727)	B3GAT1 (ENSHHUG00000050725)	ENSHHUG00000050724	micu2 (ENSHHUG00000050712)	IRF2BP1 (ENSHHUG00000050711)	hnrnpl (ENSHHUG00000050668)	actb1 (ENSHHUG00000050662)	ENSHHUG00000050652	ENSHHUG00000050650 ##22	ckma (ENSHHUG00000050536) ##22	ENSHHUG00000050535	ENSHHUG00000050534	ENSHHUG00000050533	ENSHHUG00000050532 #23	ENSHHUG00000050531	EXOC3L2 (ENSHHUG00000050530) ##27	ppp1r14aa (ENSHHUG00000050529)	dlb (ENSHHUG00000050527)
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173784	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005036020	hspa8 (ENSOTSG00005036034)	ENSOTSG00005037924	ENSOTSG00005037932	zpr1 (ENSOTSG00005038245)	h2ax1 (ENSOTSG00005038442)	hyou1 (ENSOTSG00005038472)	vps11 (ENSOTSG00005044419)	ift46 (ENSOTSG00005044543)	BBX (ENSOTSG00005044735)	B3GAT1 (ENSOTSG00005044736)	micu2 (ENSOTSG00005044738)	IRF2BP1 (ENSOTSG00005044741)	hnrnpl (ENSOTSG00005044743)	ENSOTSG00005044875	ckma (ENSOTSG00005044876) ##22	MARK4 (ENSOTSG00005044877)	EXOC3L2 (ENSOTSG00005044878) ##27	ppp1r14aa (ENSOTSG00005044879)	dlb (ENSOTSG00005044880)	ENSOTSG00005044881	alkbh6 (ENSOTSG00005044882)	nova1 (ENSOTSG00005044883)	ENSOTSG00005044884	crx (ENSOTSG00005044885)	ENSOTSG00005044886	plekhb1 (ENSOTSG00005044887)	fam168a (ENSOTSG00005044888)	FCHSD2 (ENSOTSG00005044891)	ENSOTSG00005044899	ENSOTSG00005044901
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005020026	hspa8 (ENSOTSG00005020062)	ENSOTSG00005022110	ENSOTSG00005022118	zpr1 (ENSOTSG00005022289)	h2ax1 (ENSOTSG00005022474)	hyou1 (ENSOTSG00005022487)	vps11 (ENSOTSG00005023954)	ift46 (ENSOTSG00005024951)	BBX (ENSOTSG00005025022)	B3GAT1 (ENSOTSG00005025024)	micu2 (ENSOTSG00005025034)	IRF2BP1 (ENSOTSG00005025036)	hnrnpl (ENSOTSG00005025038)	ENSOTSG00005025133	ckma (ENSOTSG00005025137) ##22	MARK4 (ENSOTSG00005001434)	EXOC3L2 (ENSOTSG00005001493) ##27	ppp1r14aa (ENSOTSG00005001495)	dlb (ENSOTSG00005001497)	ENSOTSG00005001499	alkbh6 (ENSOTSG00005001500)	NOVA2 (ENSOTSG00005001501)	ENSOTSG00005001503	crx (ENSOTSG00005001504)	ENSOTSG00005001505	fam168a (ENSOTSG00005001507)	plekhb1 (ENSOTSG00005001508)	FCHSD2 (ENSOTSG00005001514)	ENSOTSG00005001704	ENSOTSG00005001718
Coho salmon	MODERN SPECIES	26	ENSOKIG00005001296	hspa8 (ENSOKIG00005001342)	ENSOKIG00005001368	ENSOKIG00005001385	zpr1 (ENSOKIG00005001443)	h2ax1 (ENSOKIG00005001462)	hyou1 (ENSOKIG00005001730)	vps11 (ENSOKIG00005003979)	ift46 (ENSOKIG00005004079)	BBX (ENSOKIG00005004121)	B3GAT1 (ENSOKIG00005004153)	micu2 (ENSOKIG00005004172)	IRF2BP1 (ENSOKIG00005004184)	HNRNPL (ENSOKIG00005004397)	ENSOKIG00005005166	ckma (ENSOKIG00005005200) ##22	ckma (ENSOKIG00005005219) ##22	MARK4 (ENSOKIG00005005256)	ENSOKIG00005005534 ##27	ppp1r14aa (ENSOKIG00005005564)	dlb (ENSOKIG00005005580)	ENSOKIG00005005601	alkbh6 (ENSOKIG00005005610)	nova1 (ENSOKIG00005005620)	ENSOKIG00005005637	ENSOKIG00005005642	ENSOKIG00005005649	ENSOKIG00005005660	ENSOKIG00005005687	FCHSD2 (ENSOKIG00005005718)	ENSOKIG00005005814
Rainbow trout	MODERN SPECIES	3	hspa8 (ENSOMYG00000041769)	ENSOMYG00000042143	ENSOMYG00000042221	zpr1 (ENSOMYG00000042375)	H2A (ENSOMYG00000057469)	hyou1 (ENSOMYG00000042674)	vps11 (ENSOMYG00000044861)	ift46 (ENSOMYG00000044897)	ENSOMYG00000044913	ENSOMYG00000044930	ENSOMYG00000044945	ENSOMYG00000044949	ENSOMYG00000044987	ENSOMYG00000049659	ENSOMYG00000045108	ckma (ENSOMYG00000045128) ##22	ENSOMYG00000045135 ##22	ENSOMYG00000045153	ENSOMYG00000045193 ##27	ppp1r14aa (ENSOMYG00000077245)	dlb (ENSOMYG00000064695)	ENSOMYG00000045205	ENSOMYG00000065368	ENSOMYG00000069295	alkbh6 (ENSOMYG00000003168)	nova1 (ENSOMYG00000003195)	ENSOMYG00000003312	ENSOMYG00000070407	ENSOMYG00000058244	ENSOMYG00000077580	ENSOMYG00000003495
Salmo	ANCESTRAL SPECIES	44	ENSGT00940000165190.B	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00910000144115.b.dc.a.a	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a
Atlantic salmon	MODERN SPECIES	4	hspa8 (ENSSSAG00000049191)	ENSSSAG00000049121	ENSSSAG00000114214	ENSSSAG00000048739	zpr1 (ENSSSAG00000048701)	ENSSSAG00000107338	hyou1 (ENSSSAG00000041165)	ENSSSAG00000039166	ift46 (ENSSSAG00000032149)	ENSSSAG00000031513	ENSSSAG00000015502	ENSSSAG00000073142	ENSSSAG00000031369	ENSSSAG00000015815	SFRS7 (ENSSSAG00000015467)	ckm3 (ENSSSAG00000015360) ##22	ENSSSAG00000096877	ENSSSAG00000013065	ENSSSAG00000087356	ENSSSAG00000093155	ENSSSAG00000012320 ##27	ppp1r14aa (ENSSSAG00000089852)	dlb (ENSSSAG00000075986)	capns1a (ENSSSAG00000011852)	alkbh6 (ENSSSAG00000011720)	nova1 (ENSSSAG00000011478)	ENSSSAG00000122286	ENSSSAG00000102383	ENSSSAG00000011401	h3f3a (ENSSSAG00000011330)	ENSSSAG00000011266
River trout	MODERN SPECIES	6	ENSSTUG00000016607	hspa8 (ENSSTUG00000016553)	ENSSTUG00000016530	ENSSTUG00000016498	zpr1 (ENSSTUG00000016443)	h2ax1 (ENSSTUG00000016438)	hyou1 (ENSSTUG00000015801)	vps11 (ENSSTUG00000014949)	ift46 (ENSSTUG00000012267)	BBX (ENSSTUG00000012233)	B3GAT1 (ENSSTUG00000012188)	micu2 (ENSSTUG00000012176)	IRF2BP1 (ENSSTUG00000012172)	hnrnpl (ENSSTUG00000011908)	ENSSTUG00000011838	ckma (ENSSTUG00000011828) ##22	MARK4 (ENSSTUG00000011588)	EXOC3L2 (ENSSTUG00000011550) ##27	ppp1r14aa (ENSSTUG00000011543)	dlb (ENSSTUG00000011524)	ENSSTUG00000011497	alkbh6 (ENSSTUG00000011492)	nova1 (ENSSTUG00000011443)	ENSSTUG00000011430	crx (ENSSTUG00000011422)	ENSSTUG00000011409	plekhb1 (ENSSTUG00000011405)	fam168a (ENSSTUG00000011347)	FCHSD2 (ENSSTUG00000011322)	ENSSTUG00000011270	ENSSTUG00000011254
Northern pike	MODERN SPECIES	6	ENSELUG00000016236	ENSELUG00000016261	zpr1 (ENSELUG00000016289)	h2ax1 (ENSELUG00000008621)	hyou1 (ENSELUG00000016398)	vps11 (ENSELUG00000016477)	ift46 (ENSELUG00000016513)	BBX (ENSELUG00000016555)	B3GAT1 (ENSELUG00000016581)	GLB1L2 (ENSELUG00000016624)	micu2 (ENSELUG00000016716)	IRF2BP1 (ENSELUG00000016642)	hnrnpl (ENSELUG00000016863)	srsf7a (ENSELUG00000016922)	slc8a2a (ENSELUG00000017003)	ckma (ENSELUG00000017033) ##22	ENSELUG00000031972	MARK4 (ENSELUG00000017104)	EXOC3L2 (ENSELUG00000017170) ##27	ppp1r14aa (ENSELUG00000017185)	dlb (ENSELUG00000017222)	ENSELUG00000033905	ENSELUG00000017247	zgc:153990 (ENSELUG00000017267)	capns1a (ENSELUG00000017326)	alkbh6 (ENSELUG00000017352)	nova1 (ENSELUG00000017375)	kptn (ENSELUG00000017416)	crx (ENSELUG00000017439)	ENSELUG00000017446	ENSELUG00000025385
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Haplochromini	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Burton s mouthbrooder	MODERN SPECIES	1145																ENSHBUG00000001780 ##22	ENSHBUG00000001774	ENSHBUG00000001767 #23
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES	44	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00910000144115.b.dc.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a ##27	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q	ENSGT00390000008610.a.b.b.a.a.b	ENSGT00530000064411.b.e
Salmo	ANCESTRAL SPECIES	17	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00940000173128.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a ##27	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00990000213120	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000087660	ENSSSAG00000099399	hyou1 (ENSSSAG00000070523)	vps11 (ENSSSAG00000073092)	ENSSSAG00000073124	ENSSSAG00000073126	ENSSSAG00000100012	ENSSSAG00000073134	ENSSSAG00000121731	i2bp1 (ENSSSAG00000073147)	ENSSSAG00000073158	hnrnpl (ENSSSAG00000099862)	slc8a2a (ENSSSAG00000073560)	nccrp1 (ENSSSAG00000075920)	ckma (ENSSSAG00000075928) ##22	ckm2 (ENSSSAG00000075922) ##22	ENSSSAG00000075935	ENSSSAG00000075971 ##27	ppp1r14aa (ENSSSAG00000086720)	dlb (ENSSSAG00000063795)	ENSSSAG00000075989	zgc:153990 (ENSSSAG00000108819)	ENSSSAG00000075994	nova1 (ENSSSAG00000076005)	ENSSSAG00000075999	ENSSSAG00000076024	ENSSSAG00000101243	h3f3a (ENSSSAG00000076232)	fam168a (ENSSSAG00000000571)	ENSSSAG00000107897	ENSSSAG00000000620
River trout	MODERN SPECIES	10	ENSSTUG00000005989	ENSSTUG00000005978	hyou1 (ENSSTUG00000003329)	vps11 (ENSSTUG00000003095)	BBX (ENSSTUG00000003061)	B3GAT1 (ENSSTUG00000003010)	ENSSTUG00000002887	micu2 (ENSSTUG00000002846)	IRF2BP1 (ENSSTUG00000002841)	ENSSTUG00000002718	hnrnpl (ENSSTUG00000002311)	ENSSTUG00000002265	slc8a2a (ENSSTUG00000002168)	nccrp1 (ENSSTUG00000002140)	ckma (ENSSTUG00000046932) ##22	ckma (ENSSTUG00000046897) ##22	MARK4 (ENSSTUG00000046778)	EXOC3L2 (ENSSTUG00000046759) ##27	ppp1r14aa (ENSSTUG00000046753)	dlb (ENSSTUG00000046740)	ENSSTUG00000046731	ENSSTUG00000046727	zgc:153990 (ENSSTUG00000046722)	CAPNS1 (ENSSTUG00000046718)	ENSSTUG00000046696	nova1 (ENSSTUG00000046672)	kptn (ENSSTUG00000046541)	crx (ENSSTUG00000046524)	ENSSTUG00000046520	plekhb1 (ENSSTUG00000046511)	fam168a (ENSSTUG00000046495)
Oncorhynchus	ANCESTRAL SPECIES	41	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e.a	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00910000144115.b.dc.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT00940000159555.v.b.d.b	ENSGT01030000234613.b.b.h.a ##27	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q	ENSGT00390000008610.a.b.b.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	43	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e.a	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00910000144115.b.dc.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a ##27	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a	ENSGT00510000046732.A.c.q	ENSGT00390000008610.a.b.b.a.a.b	ENSGT00530000064411.b.e
Coho salmon	MODERN SPECIES	20	ENSOKIG00005040492	zpr1 (ENSOKIG00005040900)	ENSOKIG00005041254	hyou1 (ENSOKIG00005041683)	vps11 (ENSOKIG00005045947)	BBX (ENSOKIG00005045957)	B3GAT1 (ENSOKIG00005045964)	ENSOKIG00005046029	MICU2 (ENSOKIG00005046081)	IRF2BP1 (ENSOKIG00005046088)	ENSOKIG00005046095	hnrnpl (ENSOKIG00005046194)	ENSOKIG00005046863	slc8a2a (ENSOKIG00005046872)	nccrp1 (ENSOKIG00005046918)	ckma (ENSOKIG00005046933) ##22	ENSOKIG00005046943	EXOC3L2 (ENSOKIG00005046973) ##27	ENSOKIG00005046979	ppp1r14aa (ENSOKIG00005046985)	dlb (ENSOKIG00005047008)	ENSOKIG00005047015	ENSOKIG00005047019	zgc:153990 (ENSOKIG00005047028)	ENSOKIG00005047032	nova1 (ENSOKIG00005047065)	crx (ENSOKIG00005047252)	ENSOKIG00005047257	plekhb1 (ENSOKIG00005047266)	ENSOKIG00005047283	FCHSD2 (ENSOKIG00005047308)
Salmoninae	ANCESTRAL SPECIES	348											ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000008610.a.b.b.b	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d	ENSGT00940000156536.e.a.h	ENSGT00390000009497.a.d	ENSGT00940000156648.c.a.b	ENSGT00390000015655.a.m.b
Huchen	MODERN SPECIES	264	ENSHHUG00000051054	HSPA8 (ENSHHUG00000051052)	zpr1 (ENSHHUG00000051004)	h2ax1 (ENSHHUG00000050985)	hyou1 (ENSHHUG00000050786)	vps11 (ENSHHUG00000050754)	ift46 (ENSHHUG00000050741)	BBX (ENSHHUG00000050727)	B3GAT1 (ENSHHUG00000050725)	ENSHHUG00000050724	micu2 (ENSHHUG00000050712)	IRF2BP1 (ENSHHUG00000050711)	hnrnpl (ENSHHUG00000050668)	actb1 (ENSHHUG00000050662)	ENSHHUG00000050652	ENSHHUG00000050650 ##22	ckma (ENSHHUG00000050536) ##22	ENSHHUG00000050535	ENSHHUG00000050534	ENSHHUG00000050533	ENSHHUG00000050532 #23	ENSHHUG00000050531	EXOC3L2 (ENSHHUG00000050530) ##27	ppp1r14aa (ENSHHUG00000050529)	dlb (ENSHHUG00000050527)
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f	ENSGT00940000156251.b.a	ENSGT00940000155350.h.d	ENSGT00940000156536.e.a.h
Salmo	ANCESTRAL SPECIES	17	ENSGT00950000183206.a.a.d	ENSGT00390000005306.g	ENSGT00940000164443.b.a	ENSGT00940000157686.g	ENSGT00940000153635.A.e	ENSGT00940000158592.f.b	ENSGT00940000157165.e.b.a	ENSGT00950000182942.b.e	ENSGT00950000183079.A.b.c.b.d	ENSGT00940000162120.f.a.b	ENSGT00390000014139	ENSGT01030000234642.a.b.b.d.b.c.b.c	ENSGT00940000173128.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.a.a.b.a.b ##22	ENSGT00950000182772.A.a.a.a.a.b.a.a ##22	ENSGT00940000159555.v.b.d.a.a	ENSGT01030000234613.b.b.h.a ##27	ENSGT00950000182985.a.b.a.b	ENSGT00940000164418.a.b.e	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b.b	ENSGT00990000213120	ENSGT00940000155573.g.b.b	ENSGT00390000002548.j	ENSGT00940000164977.a.a	ENSGT01100000263504.a.b.b.a.b.tb	ENSGT00390000013989.b.f	ENSGT00390000005140.a.o.a
River trout	MODERN SPECIES	10	zpr1 (ENSSTUG00000006026)	ENSSTUG00000005989	ENSSTUG00000005978	hyou1 (ENSSTUG00000003329)	vps11 (ENSSTUG00000003095)	BBX (ENSSTUG00000003061)	B3GAT1 (ENSSTUG00000003010)	ENSSTUG00000002887	micu2 (ENSSTUG00000002846)	IRF2BP1 (ENSSTUG00000002841)	ENSSTUG00000002718	hnrnpl (ENSSTUG00000002311)	ENSSTUG00000002265	slc8a2a (ENSSTUG00000002168)	nccrp1 (ENSSTUG00000002140)	ckma (ENSSTUG00000046932) ##22	ckma (ENSSTUG00000046897) ##22	MARK4 (ENSSTUG00000046778)	EXOC3L2 (ENSSTUG00000046759) ##27	ppp1r14aa (ENSSTUG00000046753)	dlb (ENSSTUG00000046740)	ENSSTUG00000046731	ENSSTUG00000046727	zgc:153990 (ENSSTUG00000046722)	CAPNS1 (ENSSTUG00000046718)	ENSSTUG00000046696	nova1 (ENSSTUG00000046672)	kptn (ENSSTUG00000046541)	crx (ENSSTUG00000046524)	ENSSTUG00000046520	plekhb1 (ENSSTUG00000046511)
Atlantic salmon	MODERN SPECIES	23	h2ax1 (ENSSSAG00000114519)	ENSSSAG00000087660	ENSSSAG00000099399	hyou1 (ENSSSAG00000070523)	vps11 (ENSSSAG00000073092)	ENSSSAG00000073124	ENSSSAG00000073126	ENSSSAG00000100012	ENSSSAG00000073134	ENSSSAG00000121731	i2bp1 (ENSSSAG00000073147)	ENSSSAG00000073158	hnrnpl (ENSSSAG00000099862)	slc8a2a (ENSSSAG00000073560)	nccrp1 (ENSSSAG00000075920)	ckma (ENSSSAG00000075928) ##22	ckm2 (ENSSSAG00000075922) ##22	ENSSSAG00000075935	ENSSSAG00000075971 ##27	ppp1r14aa (ENSSSAG00000086720)	dlb (ENSSSAG00000063795)	ENSSSAG00000075989	zgc:153990 (ENSSSAG00000108819)	ENSSSAG00000075994	nova1 (ENSSSAG00000076005)	ENSSSAG00000075999	ENSSSAG00000076024	ENSSSAG00000101243	h3f3a (ENSSSAG00000076232)	fam168a (ENSSSAG00000000571)	ENSSSAG00000107897
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.a ##22
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000009522	ENSOMYG00000009473	ENSOMYG00000009397	ENSOMYG00000009310	ENSOMYG00000009258	hnrnpl (ENSOMYG00000009052)	ENSOMYG00000008873	slc8a2a (ENSOMYG00000008190)	nccrp1 (ENSOMYG00000007311)	ENSOMYG00000052806	ckma (ENSOMYG00000066323) ##22	ENSOMYG00000007181	ENSOMYG00000007158 ##27	ppp1r14aa (ENSOMYG00000061359)	ENSOMYG00000006984	CKM (ENSOMYG00000007272) ##22	dlb (ENSOMYG00000006961)	ENSOMYG00000006924	zgc:153990 (ENSOMYG00000006899)	ENSOMYG00000006889	nova1 (ENSOMYG00000006831)	ENSOMYG00000006535	ENSOMYG00000006507	ENSOMYG00000006490	ENSOMYG00000006448	ENSOMYG00000006287	ENSOMYG00000060501	ENSOMYG00000006097	ENSOMYG00000005978	ENSOMYG00000005939	ENSOMYG00000005887
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.a ##22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	23	ENSOTSG00005040780	hyou1 (ENSOTSG00005040396)	vps11 (ENSOTSG00005040377)	vps11 (ENSOTSG00005040376)	BBX (ENSOTSG00005040373)	B3GAT1 (ENSOTSG00005040363)	ENSOTSG00005040345	micu2 (ENSOTSG00005040339)	IRF2BP1 (ENSOTSG00005040337)	ENSOTSG00005040325	hnrnpl (ENSOTSG00005039066)	ENSOTSG00005039044	slc8a2a (ENSOTSG00005038675)	nccrp1 (ENSOTSG00005038665)	ckma (ENSOTSG00005038663) ##22	ckma (ENSOTSG00005038662) ##22	ENSOTSG00005038660	MARK4 (ENSOTSG00005038659)	ENSOTSG00005038657	EXOC3L2 (ENSOTSG00005038655) ##27	ppp1r14aa (ENSOTSG00005038653)	dlb (ENSOTSG00005038647)	ENSOTSG00005038643	zgc:153990 (ENSOTSG00005038641)	ENSOTSG00005038639	nova1 (ENSOTSG00005038637)	crx (ENSOTSG00005038635)	kptn (ENSOTSG00005038591)	ENSOTSG00005038582	plekhb1 (ENSOTSG00005038581)	fam168a (ENSOTSG00005038579)
Chinook salmon	MODERN SPECIES	23	ENSOTSG00005040781	ENSOTSG00005040780	hyou1 (ENSOTSG00005040396)	vps11 (ENSOTSG00005040377)	vps11 (ENSOTSG00005040376)	BBX (ENSOTSG00005040373)	B3GAT1 (ENSOTSG00005040363)	ENSOTSG00005040345	micu2 (ENSOTSG00005040339)	IRF2BP1 (ENSOTSG00005040337)	ENSOTSG00005040325	hnrnpl (ENSOTSG00005039066)	ENSOTSG00005039044	slc8a2a (ENSOTSG00005038675)	nccrp1 (ENSOTSG00005038665)	ckma (ENSOTSG00005038663) ##22	ckma (ENSOTSG00005038662) ##22	ENSOTSG00005038660	MARK4 (ENSOTSG00005038659)	ENSOTSG00005038657	EXOC3L2 (ENSOTSG00005038655) ##27	ppp1r14aa (ENSOTSG00005038653)	dlb (ENSOTSG00005038647)	ENSOTSG00005038643	zgc:153990 (ENSOTSG00005038641)	ENSOTSG00005038639	nova1 (ENSOTSG00005038637)	crx (ENSOTSG00005038635)	kptn (ENSOTSG00005038591)	ENSOTSG00005038582	plekhb1 (ENSOTSG00005038581)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173128.b	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000042143	ENSOMYG00000042221	zpr1 (ENSOMYG00000042375)	H2A (ENSOMYG00000057469)	hyou1 (ENSOMYG00000042674)	vps11 (ENSOMYG00000044861)	ift46 (ENSOMYG00000044897)	ENSOMYG00000044913	ENSOMYG00000044930	ENSOMYG00000044945	ENSOMYG00000044949	ENSOMYG00000044987	ENSOMYG00000049659	ENSOMYG00000045108	ckma (ENSOMYG00000045128) ##22	ENSOMYG00000045135 ##22	ENSOMYG00000045153	ENSOMYG00000045193 ##27	ppp1r14aa (ENSOMYG00000077245)	dlb (ENSOMYG00000064695)	ENSOMYG00000045205	ENSOMYG00000065368	ENSOMYG00000069295	alkbh6 (ENSOMYG00000003168)	nova1 (ENSOMYG00000003195)	ENSOMYG00000003312	ENSOMYG00000070407	ENSOMYG00000058244	ENSOMYG00000077580	ENSOMYG00000003495	ENSOMYG00000003572
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00950000183206.a.b.a.a.b.c.a	ENSGT00940000159804.i	ENSGT00950000183206.a.a.c	ENSGT00390000005306.h.a.a	ENSGT01020000230360.c.b.b	ENSGT00940000157686.h	ENSGT00940000153635.A.f	ENSGT00390000005544	ENSGT00940000158592.f.a	ENSGT00940000157165.e.b.b	ENSGT00950000183079.A.b.c.b.c	ENSGT00940000162120.f.a.a	ENSGT01030000234642.a.b.b.d.b.c.b.d	ENSGT00940000173784	ENSGT00950000182772.A.a.a.a.a.a ##22	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.a ##22	ENSGT00940000159555.v.b.d.a.b	ENSGT01030000234613.b.b.h.b ##27	ENSGT00950000182985.a.b.a.a	ENSGT00940000164418.a.b.f	ENSGT00940000155478.hb.b.a	ENSGT00510000048626	ENSGT00940000155573.g.b.a	ENSGT00390000002548.i	ENSGT00940000164977.a.b	ENSGT01100000263504.a.b.a.a	ENSGT00390000013989.b.e	ENSGT00390000005140.a.o.b	ENSGT00510000046732.A.c.r	ENSGT00390000008610.a.b.b.a.a.a	ENSGT00530000064411.b.f
Coho salmon	MODERN SPECIES	26	hspa8 (ENSOKIG00005001342)	ENSOKIG00005001368	ENSOKIG00005001385	zpr1 (ENSOKIG00005001443)	h2ax1 (ENSOKIG00005001462)	hyou1 (ENSOKIG00005001730)	vps11 (ENSOKIG00005003979)	ift46 (ENSOKIG00005004079)	BBX (ENSOKIG00005004121)	B3GAT1 (ENSOKIG00005004153)	micu2 (ENSOKIG00005004172)	IRF2BP1 (ENSOKIG00005004184)	HNRNPL (ENSOKIG00005004397)	ENSOKIG00005005166	ckma (ENSOKIG00005005200) ##22	ckma (ENSOKIG00005005219) ##22	MARK4 (ENSOKIG00005005256)	ENSOKIG00005005534 ##27	ppp1r14aa (ENSOKIG00005005564)	dlb (ENSOKIG00005005580)	ENSOKIG00005005601	alkbh6 (ENSOKIG00005005610)	nova1 (ENSOKIG00005005620)	ENSOKIG00005005637	ENSOKIG00005005642	ENSOKIG00005005649	ENSOKIG00005005660	ENSOKIG00005005687	FCHSD2 (ENSOKIG00005005718)	ENSOKIG00005005814	ENSOKIG00005005853
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.a.b.b.b.b ##22
Rainbow trout	MODERN SPECIES	1	hyou1 (ENSOMYG00000010478)	vps11 (ENSOMYG00000009570)	ENSOMYG00000075603	vps11 (ENSOMYG00000009555)	ENSOMYG00000014549	ENSOMYG00000009522	ENSOMYG00000009473	ENSOMYG00000009397	ENSOMYG00000009310	ENSOMYG00000009258	hnrnpl (ENSOMYG00000009052)	ENSOMYG00000008873	slc8a2a (ENSOMYG00000008190)	nccrp1 (ENSOMYG00000007311)	ENSOMYG00000052806	ckma (ENSOMYG00000066323) ##22	ENSOMYG00000007181	ENSOMYG00000007158 ##27	ppp1r14aa (ENSOMYG00000061359)	ENSOMYG00000006984	CKM (ENSOMYG00000007272) ##22	dlb (ENSOMYG00000006961)	ENSOMYG00000006924	zgc:153990 (ENSOMYG00000006899)	ENSOMYG00000006889	nova1 (ENSOMYG00000006831)	ENSOMYG00000006535	ENSOMYG00000006507	ENSOMYG00000006490	ENSOMYG00000006448	ENSOMYG00000006287
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Huchen	MODERN SPECIES	144	ENSHHUG00000029666	hyou1 (ENSHHUG00000029692)	vps11 (ENSHHUG00000030067)	BBX (ENSHHUG00000030256)	ENSHHUG00000030258	B3GAT1 (ENSHHUG00000030271)	ENSHHUG00000030291	micu2 (ENSHHUG00000030316)	IRF2BP1 (ENSHHUG00000030328)	ENSHHUG00000030331	hnrnpl (ENSHHUG00000030362)	ENSHHUG00000030415	slc8a2a (ENSHHUG00000030442)	nccrp1 (ENSHHUG00000030948)	ENSHHUG00000030956	ckma (ENSHHUG00000030958) ##22	atat1 (ENSHHUG00000031051)	tnfa (ENSHHUG00000031062)	ENSHHUG00000031075	ENSHHUG00000031080
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b.b ##22
Chinook salmon	MODERN SPECIES	3	TUBB3 (ENSOTSG00005017643)	mc1r (ENSOTSG00005017642)	tcf25 (ENSOTSG00005017640)	cyba (ENSOTSG00005017638)	mvda (ENSOTSG00005017636)	pdcd5 (ENSOTSG00005017627)	ENSOTSG00005017625	ENSOTSG00005017624	ENSOTSG00005017622	ENSOTSG00005017619	ENSOTSG00005017617	kif7 (ENSOTSG00005017614)	RHCG (ENSOTSG00005017521)	fes (ENSOTSG00005016874)	furina (ENSOTSG00005016838)	ENSOTSG00005016837 ##22	ENSOTSG00005016836	E2F4 (ENSOTSG00005016835)	si:ch211-122f10.4 (ENSOTSG00005016832)	slc38a7 (ENSOTSG00005016827)	got2b (ENSOTSG00005016821)	calb2b (ENSOTSG00005016818)	ENSOTSG00005016816	cmtr2 (ENSOTSG00005016815)	ENSOTSG00005016814	dnaaf1 (ENSOTSG00005016813)	nrn1lb (ENSOTSG00005016811)	thap11 (ENSOTSG00005016810)	ENSOTSG00005016809	ENSOTSG00005016808	vrk3 (ENSOTSG00005016806)
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Aves	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Duck	MODERN SPECIES	1336																ENSAPLG00000016738 ##22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.a.b ##22
Zebra finch	MODERN SPECIES	80	ENSTGUG00000025223	ENSTGUG00000027729	ENSTGUG00000024195	ENSTGUG00000026453	ENSTGUG00000021279	ENSTGUG00000025049	ENSTGUG00000025743	CLASRP (ENSTGUG00000026126)	ENSTGUG00000029551	ENSTGUG00000024482	ENSTGUG00000022148	ERCC1 (ENSTGUG00000026421)	PPP1R13L (ENSTGUG00000029072)	SNRPD2 (ENSTGUG00000028090)	ERCC2 (ENSTGUG00000027406)	ENSTGUG00000023358 ##22	ENSTGUG00000025702	ENSTGUG00000020226	ENSTGUG00000020046	ENSTGUG00000026683	ENSTGUG00000020277	ENSTGUG00000024292	ENSTGUG00000021349	ENSTGUG00000018937	ENSTGUG00000028466	ENSTGUG00000028966	ENSTGUG00000028329	ENSTGUG00000028993	ENSTGUG00000028831	ENSTGUG00000019200	ENSTGUG00000025753
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b ##22
Protacanthopterygii	ANCESTRAL SPECIES	7	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.a.b ##22	ENSGT00940000164942.b	ENSGT00940000153594.d	ENSGT00390000002172.A.a.f	ENSGT00940000156831	ENSGT00940000161226.a	ENSGT00940000160511.b	ENSGT00940000155481	ENSGT00940000160889	ENSGT00940000154035.a	ENSGT00940000158201	ENSGT00940000161449	ENSGT00390000001015.d	ENSGT00940000156517	ENSGT00940000158872	ENSGT00510000048154
Salmoninae	ANCESTRAL SPECIES	75	ENSGT00940000155548.sb.a.a.a	ENSGT00940000155548.sb.a.b	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT00940000162179.e.a.a.j.b	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253	ENSGT00940000158201.f	ENSGT00940000158052.a.h
Huchen	DUPLICATION
Huchen	MODERN SPECIES	502	eif3k (ENSHHUG00000002842)	ENSHHUG00000003194	DMWD (ENSHHUG00000003212)	hif1al (ENSHHUG00000003221)	ENSHHUG00000003268	ENSHHUG00000003281	ENSHHUG00000003285	ccdc9 (ENSHHUG00000003294)	bbc3 (ENSHHUG00000003301)	sae1 (ENSHHUG00000003305)	ENSHHUG00000003343	ZC3H4 (ENSHHUG00000003349)	zgc:154093 (ENSHHUG00000003401)	ercc2 (ENSHHUG00000003409)	klc3 (ENSHHUG00000003997)	ckma (ENSHHUG00000004071) ##22	MARK4 (ENSHHUG00000004176)	ENSHHUG00000004201	ENSHHUG00000004206	ENSHHUG00000004276	hip1 (ENSHHUG00000004301)	bcl7bb (ENSHHUG00000004332)	baz1b (ENSHHUG00000004346)	fzd9b (ENSHHUG00000004723)	grk7b (ENSHHUG00000004727)	rnf7 (ENSHHUG00000004729)	ENSHHUG00000004751
Huchen	MODERN SPECIES	261	eif3k (ENSHHUG00000046571)	ENSHHUG00000046514	DMWD (ENSHHUG00000046513)	hif1al (ENSHHUG00000046435)	zgc:152863 (ENSHHUG00000046426)	ENSHHUG00000046424	pak4 (ENSHHUG00000046410)	ENSHHUG00000046405	ccdc9 (ENSHHUG00000046380)	sae1 (ENSHHUG00000046363)	ENSHHUG00000046359	ENSHHUG00000046344	zgc:154093 (ENSHHUG00000046338)	ercc2 (ENSHHUG00000046317)	klc3 (ENSHHUG00000046178)	CKM (ENSHHUG00000046119) ##22	MARK4 (ENSHHUG00000046081)	ENSHHUG00000046078	ENSHHUG00000046021	ENSHHUG00000046013	hip1 (ENSHHUG00000045943)	bcl7bb (ENSHHUG00000045927)	baz1b (ENSHHUG00000045889)	fzd9b (ENSHHUG00000045885)	grk7b (ENSHHUG00000045884)	rnf7 (ENSHHUG00000045860)	ENSHHUG00000045827	ENSHHUG00000045814	RASA2 (ENSHHUG00000045797)	ENSHHUG00000045790	fbxo36a (ENSHHUG00000045784)
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00950000182970.C.i	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000164427.a.a.h.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.c.b	ENSGT00970000196788.J.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00940000161449	ENSGT00390000001015.d.a	ENSGT00940000156517.s
Salmo	ANCESTRAL SPECIES	22	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00950000182970.C.i	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000164427.a.a.h.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.c.b	ENSGT00390000002172.A.a.f.d.b	ENSGT00970000196788.J.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00390000001015.d.a	ENSGT00940000156517.s
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000113410	ENSSSAG00000064454	ENSSSAG00000064553	ENSSSAG00000106601	ENSSSAG00000064581	ENSSSAG00000064677	ENSSSAG00000064684	CCDC9 (ENSSSAG00000064699)	bbc3 (ENSSSAG00000064715)	sae1 (ENSSSAG00000064722)	ZC3H4 (ENSSSAG00000064752)	zgc:154093 (ENSSSAG00000094011)	ercc2 (ENSSSAG00000064774)	klc3 (ENSSSAG00000064802)	ENSSSAG00000116459	CKM (ENSSSAG00000065166) ##22	ENSSSAG00000065242	ENSSSAG00000058128	ENSSSAG00000058132	ENSSSAG00000085210	ENSSSAG00000113600	ENSSSAG00000066445	bcl7bb (ENSSSAG00000066889)	ENSSSAG00000066896	baz1b (ENSSSAG00000066946)	fzd9b (ENSSSAG00000068230)	grk7b (ENSSSAG00000118238)	fa70b (ENSSSAG00000068235)	rnf7 (ENSSSAG00000068233)	ENSSSAG00000068244	RASA2 (ENSSSAG00000068267)
River trout	MODERN SPECIES	4	zgc:85932 (ENSSTUG00000039404)	eif3k (ENSSTUG00000039423)	ENSSTUG00000039449	DMWD (ENSSTUG00000039460)	hif1al (ENSSTUG00000039467)	zgc:152863 (ENSSTUG00000039713)	ENSSTUG00000039724	ccdc9 (ENSSTUG00000039733)	ENSSTUG00000039755	bbc3 (ENSSTUG00000039759)	sae1 (ENSSTUG00000039766)	ENSSTUG00000039795	zgc:154093 (ENSSTUG00000039808)	ercc2 (ENSSTUG00000039822)	klc3 (ENSSTUG00000040074)	CKM (ENSSTUG00000040094) ##22	MARK4 (ENSSTUG00000040117)	ENSSTUG00000040343	ENSSTUG00000040348	ENSSTUG00000040351	ENSSTUG00000040357	hip1 (ENSSTUG00000040385)	bcl7bb (ENSSTUG00000040731)	ENSSTUG00000040755	baz1b (ENSSTUG00000040802)	fzd9b (ENSSTUG00000041376)	grk7b (ENSSTUG00000041421)	rnf7 (ENSSTUG00000041612)	ENSSTUG00000041629	ENSSTUG00000041665	RASA2 (ENSSTUG00000041787)
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00950000182970.C.i	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000164427.a.a.h.a	ENSGT01100000263533.b.b.a.a.b.d	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.d.b	ENSGT00970000196788.J.b	ENSGT00390000002172.A.a.f.c.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00940000161449	ENSGT00390000001015.d.a
Oncorhynchus_a	ANCESTRAL SPECIES	41	ENSGT00940000158344.a.a.c	ENSGT00940000155548.sb.a.a.b	ENSGT00940000165978	ENSGT00390000009409.mb	ENSGT00940000160308.b	ENSGT00390000007686.a.b	ENSGT00940000166085.h	ENSGT00940000166340.c	ENSGT00940000158656.b.a.a	ENSGT00530000063950.a.b.e	ENSGT01020000230625.d	ENSGT00550000075007.z	ENSGT00940000160011.n	ENSGT00940000165053.c	ENSGT00940000167306.b	ENSGT00950000182772.A.a.a.a.b.c.a ##22	ENSGT00940000159555.v.a.a	ENSGT00940000153594.d.f	ENSGT00390000002172.A.a.f.d.b	ENSGT00970000196788.J.b	ENSGT00390000002172.A.a.f.c.b	ENSGT00940000156831.h	ENSGT00940000161226.a.c	ENSGT00940000160511.b.b	ENSGT00940000155481.e	ENSGT00940000160889.d	ENSGT00940000158201.e	ENSGT00940000161449	ENSGT00390000001015.d.a	ENSGT00940000156517.s	ENSGT00940000158872.c
Chinook salmon	MODERN SPECIES	5	actn4 (ENSOTSG00005003869)	zgc:85932 (ENSOTSG00005011549)	eif3k (ENSOTSG00005011550)	MAP4K1 (ENSOTSG00005011864)	ENSOTSG00005011866	DMWD (ENSOTSG00005011867)	hif1al (ENSOTSG00005011869)	zgc:152863 (ENSOTSG00005011870)	ENSOTSG00005011872	ccdc9 (ENSOTSG00005011875)	bbc3 (ENSOTSG00005011877)	sae1 (ENSOTSG00005011879)	ZC3H4 (ENSOTSG00005011883)	zgc:154093 (ENSOTSG00005011885)	klc3 (ENSOTSG00005011887)	ENSOTSG00005011888 ##22	ENSOTSG00005011890	ENSOTSG00005011891	ENSOTSG00005011892	ENSOTSG00005011893	ENSOTSG00005011894	hip1 (ENSOTSG00005011910)	bcl7bb (ENSOTSG00005011974)	ENSOTSG00005011975	baz1b (ENSOTSG00005011976)	ENSOTSG00005012091	fzd9b (ENSOTSG00005012093)	grk7b (ENSOTSG00005012094)	rnf7 (ENSOTSG00005012102)	ENSOTSG00005012105	ENSOTSG00005012106
Rainbow trout	MODERN SPECIES	16	ENSOMYG00000035680	ENSOMYG00000055860	ENSOMYG00000035927	ENSOMYG00000037144	ENSOMYG00000037156	if3c (ENSOMYG00000037187)	ENSOMYG00000037394	ENSOMYG00000037582	ENSOMYG00000037599	ENSOMYG00000037614	bbc3 (ENSOMYG00000037622)	sae1 (ENSOMYG00000037649)	zgc:154093 (ENSOMYG00000037679)	ercc2 (ENSOMYG00000037685)	klc3 (ENSOMYG00000037717)	CKM (ENSOMYG00000037749) ##22	ENSOMYG00000037895	ENSOMYG00000037957	ENSOMYG00000073656	ENSOMYG00000037961	ENSOMYG00000046044	ENSOMYG00000038283	bcl7bb (ENSOMYG00000040277)	ENSOMYG00000040292	baz1b (ENSOMYG00000040339)	fzd9b (ENSOMYG00000040357)	grk7b (ENSOMYG00000028440)	rnf7 (ENSOMYG00000028447)	ENSOMYG00000028476	ENSOMYG00000067579	shbgb (ENSOMYG00000028548)
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT00940000162179.e.a.a.j.b	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT01100000263533.b.b.a.a.b.c	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253	ENSGT00940000158201.f
Oncorhynchus_a	ANCESTRAL SPECIES	25	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000158656.b.a.b	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT01100000263533.b.b.a.a.b.c	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00390000002172.A.a.f.c.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT01000000220253	ENSGT00940000158201.f
Coho salmon	MODERN SPECIES	6	ENSOKIG00005036011	ENSOKIG00005037148	ENSOKIG00005037172	DMWD (ENSOKIG00005037220)	ENSOKIG00005037249	ENSOKIG00005037411	ENSOKIG00005037426	CCDC9 (ENSOKIG00005037468)	bbc3 (ENSOKIG00005037498)	sae1 (ENSOKIG00005037521)	ZC3H4 (ENSOKIG00005037718)	ENSOKIG00005037794	zgc:154093 (ENSOKIG00005037796)	ercc2 (ENSOKIG00005037829)	klc3 (ENSOKIG00005037922)	CKM (ENSOKIG00005037939) ##22	MARK4 (ENSOKIG00005038036)	ENSOKIG00005038443	ENSOKIG00005038458	ENSOKIG00005038531	bcl7bb (ENSOKIG00005039219)	ENSOKIG00005039257	baz1b (ENSOKIG00005039312)	fzd9b (ENSOKIG00005039502)	grk7b (ENSOKIG00005039516)	rnf7 (ENSOKIG00005039522)	ENSOKIG00005039554	RASA2 (ENSOKIG00005039755)	ENSOKIG00005042041	trip12 (ENSOKIG00005042635)	dner (ENSOKIG00005046503)
Chinook salmon	MODERN SPECIES	4	slc8a2b (ENSOTSG00005005664)	ENSOTSG00005005707	actn4 (ENSOTSG00005005711)	eif3k (ENSOTSG00005005966)	ENSOTSG00005005980	DMWD (ENSOTSG00005005984)	hif1al (ENSOTSG00005005987)	zgc:152863 (ENSOTSG00005005990)	ENSOTSG00005005991	ccdc9 (ENSOTSG00005005992)	sae1 (ENSOTSG00005005993)	ZC3H4 (ENSOTSG00005005994)	zgc:154093 (ENSOTSG00005005995)	ercc2 (ENSOTSG00005005998)	klc3 (ENSOTSG00005006002)	CKM (ENSOTSG00005006004) ##22	MARK4 (ENSOTSG00005006022)	ENSOTSG00005006083	ENSOTSG00005006084	ENSOTSG00005006085	hip1 (ENSOTSG00005006093)	bcl7bb (ENSOTSG00005006926)	baz1b (ENSOTSG00005006929)	fzd9b (ENSOTSG00005006931)	grk7b (ENSOTSG00005006934)	rnf7 (ENSOTSG00005006935)	ENSOTSG00005006936	ENSOTSG00005006937	RASA2 (ENSOTSG00005006939)	ENSOTSG00005007116	ENSOTSG00005007117
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000039435	ENSOMYG00000039821	ENSOMYG00000039324	hif1al (ENSOMYG00000040205)	ENSOMYG00000050721	ENSOMYG00000063813	pak4 (ENSOMYG00000040226)	CCDC9 (ENSOMYG00000040254)	bbc3 (ENSOMYG00000072270)	sae1 (ENSOMYG00000040271)	ENSOMYG00000067123	ZC3H4 (ENSOMYG00000040298)	zgc:154093 (ENSOMYG00000040315)	ercc2 (ENSOMYG00000040371)	klc3 (ENSOMYG00000040406)	CKM (ENSOMYG00000040438) ##22	ENSOMYG00000040566	ENSOMYG00000041299	ENSOMYG00000070121	ENSOMYG00000068221	ENSOMYG00000041042	ENSOMYG00000041050	ENSOMYG00000041135	bcl7bb (ENSOMYG00000041238)	baz1b (ENSOMYG00000041275)	grk7b (ENSOMYG00000041300)	ENSOMYG00000071384	rnf7 (ENSOMYG00000041304)	ENSOMYG00000041311	RASA2 (ENSOMYG00000041372)	fbxo36a (ENSOMYG00000041559)
Salmo	ANCESTRAL SPECIES	7	ENSGT00390000018436.b	ENSGT00940000155548.sb.a.a.a	ENSGT00390000009409.nb	ENSGT00940000160308.a	ENSGT00390000007686.a.a	ENSGT00940000166085.g	ENSGT00940000166340.d	ENSGT00940000159792.C	ENSGT00530000063950.a.b.f	ENSGT01020000230625.c	ENSGT00550000075007.y	ENSGT00940000160011.m	ENSGT00940000165053.d	ENSGT00950000182970.C.j	ENSGT00940000167306.a	ENSGT00950000182772.A.a.a.a.b.c.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a.b	ENSGT00940000164427.a.a.h.b	ENSGT00940000162179.e.a.a.j.b	ENSGT00940000164942.b	ENSGT00940000153594.d.e	ENSGT00390000002172.A.a.f.c.a	ENSGT00390000002172.A.a.f.d.a	ENSGT00970000196788.E.a.a	ENSGT00940000156831.g	ENSGT00940000161226.a.d	ENSGT00940000160511.b.a	ENSGT00940000155481.f	ENSGT00940000160889.c	ENSGT00940000158201.f
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000109272	ENSSSAG00000094654	actn4 (ENSSSAG00000056108)	ENSSSAG00000057129	ENSSSAG00000057098	ENSSSAG00000110379	hif1a (ENSSSAG00000057212)	ENSSSAG00000103318	CCDC9 (ENSSSAG00000057362)	bbc3 (ENSSSAG00000057379)	sae1 (ENSSSAG00000057386)	ZC3H4 (ENSSSAG00000057401)	zgc:154093 (ENSSSAG00000057416)	ercc2 (ENSSSAG00000057436)	klc3 (ENSSSAG00000057611)	CKM (ENSSSAG00000057721) ##22	ENSSSAG00000057731	ENSSSAG00000057766	ENSSSAG00000099530	ENSSSAG00000089564	ENSSSAG00000088515	ENSSSAG00000058306	bcl7bb (ENSSSAG00000109239)	ENSSSAG00000089532	ENSSSAG00000063459	baz1b (ENSSSAG00000063528)	fzd9b (ENSSSAG00000065556)	grk7b (ENSSSAG00000065566)	rnf7 (ENSSSAG00000065691)	ENSSSAG00000065700	ENSSSAG00000065714
River trout	MODERN SPECIES	18	ENSSTUG00000019263	actn4 (ENSSTUG00000019334)	eif3k (ENSSTUG00000020428)	ENSSTUG00000020526	DMWD (ENSSTUG00000020745)	hif1al (ENSSTUG00000020772)	zgc:152863 (ENSSTUG00000021322)	pak4 (ENSSTUG00000021331)	ccdc9 (ENSSTUG00000021348)	bbc3 (ENSSTUG00000021380)	sae1 (ENSSTUG00000021386)	ZC3H4 (ENSSTUG00000021427)	zgc:154093 (ENSSTUG00000021434)	ercc2 (ENSSTUG00000021440)	klc3 (ENSSTUG00000021503)	CKM (ENSSTUG00000021522) ##22	ENSSTUG00000021530	MARK4 (ENSSTUG00000021550)	ENSSTUG00000021766	ENSSTUG00000021781	ENSSTUG00000021793	hip1 (ENSSTUG00000021828)	bcl7bb (ENSSTUG00000022053)	ENSSTUG00000022072	baz1b (ENSSTUG00000022106)	fzd9b (ENSSTUG00000022387)	grk7b (ENSSTUG00000022411)	rnf7 (ENSSTUG00000022459)	ENSSTUG00000022463	RASA2 (ENSSTUG00000022522)	ENSSTUG00000024301
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b.d ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b.d ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.a.b.d ##22
Coho salmon	MODERN SPECIES	9	eif3k (ENSOKIG00005017257)	ENSOKIG00005017217	ENSOKIG00005017196	DMWD (ENSOKIG00005017189)	hif1al (ENSOKIG00005016891)	zgc:152863 (ENSOKIG00005016841)	ENSOKIG00005016819	ENSOKIG00005016808	ENSOKIG00005016803	ccdc9 (ENSOKIG00005016780)	bbc3 (ENSOKIG00005016768)	sae1 (ENSOKIG00005016752)	ZC3H4 (ENSOKIG00005016744)	zgc:154093 (ENSOKIG00005016740)	klc3 (ENSOKIG00005013161)	ENSOKIG00005013121 ##22	MARK4 (ENSOKIG00005012854)	ENSOKIG00005012786	ENSOKIG00005012735	ENSOKIG00005012706	hip1 (ENSOKIG00005009611)	bcl7bb (ENSOKIG00005009360)	baz1b (ENSOKIG00005009152)	fzd9b (ENSOKIG00005009102)	grk7b (ENSOKIG00005009056)	rnf7 (ENSOKIG00005009038)	ENSOKIG00005008978	ENSOKIG00005008947	RASA2 (ENSOKIG00005008315)	ENSOKIG00005008193	fbxo36a (ENSOKIG00005008181)
Northern pike	MODERN SPECIES		zgc:85932 (ENSELUG00000017629)	ENSELUG00000017636	eif3k (ENSELUG00000017660)	MAP4K1 (ENSELUG00000017720)	DMWD (ENSELUG00000017738)	hif1al (ENSELUG00000017753)	zgc:152863 (ENSELUG00000001124)	pak4 (ENSELUG00000017809)	ccdc9 (ENSELUG00000017869)	bbc3 (ENSELUG00000024973)	sae1 (ENSELUG00000017913)	ZC3H4 (ENSELUG00000017959)	zgc:154093 (ENSELUG00000017978)	ercc2 (ENSELUG00000018055)	klc3 (ENSELUG00000018079)	CKM (ENSELUG00000018088) ##22	MARK4 (ENSELUG00000018107)	ENSELUG00000032278	ENSELUG00000018405	ENSELUG00000018453	hip1 (ENSELUG00000018521)	BCL7B (ENSELUG00000001376)	baz1b (ENSELUG00000018642)	fzd9b (ENSELUG00000018656)	grk7b (ENSELUG00000018678)	rnf7 (ENSELUG00000025862)	ENSELUG00000001446	RASA2 (ENSELUG00000018810)	ENSELUG00000030354	fbxo36a (ENSELUG00000018838)	trip12 (ENSELUG00000018896)
Euteleostomi	ANCESTRAL SPECIES	684															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Actinopterygii	ANCESTRAL SPECIES	581															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Reedfish	MODERN SPECIES		si:cabz01085950.1 (ENSECRG00000007234)	ENSECRG00000007258	tnnt2d (ENSECRG00000007289)	CALD1 (ENSECRG00000007402)	bpgm (ENSECRG00000007417)	strap (ENSECRG00000007427)	dera (ENSECRG00000007440)	SLC15A5 (ENSECRG00000007455)	mgst1.1 (ENSECRG00000007469)	lmo3 (ENSECRG00000007496)	arhgef39 (ENSECRG00000007528)	ercc2 (ENSECRG00000007546)	dnali1 (ENSECRG00000007569)	dnali1 (ENSECRG00000007590)	dnali1 (ENSECRG00000007642)	ckmb (ENSECRG00000007659) ##22	rpp14 (ENSECRG00000007673)	HTD2 (ENSECRG00000007680)	xpot (ENSECRG00000007727)	ENSECRG00000007838	rtcb (ENSECRG00000007861)	stmp1 (ENSECRG00000007878)	coa6 (ENSECRG00000007887)	slc13a4 (ENSECRG00000007898)	zgc:162331 (ENSECRG00000007917)	ENSECRG00000007944	ENSECRG00000007978	KCNA1 (ENSECRG00000007987)	KCNA5 (ENSECRG00000007994)	large1 (ENSECRG00000008013)	braf (ENSECRG00000008072)
Neopterygii	ANCESTRAL SPECIES	77	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b	ENSGT00940000166085	ENSGT00940000161313	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000182985.a.b	ENSGT00940000160348	ENSGT00940000165970	ENSGT00440000037640	ENSGT01040000240503.C	ENSGT00940000164418	ENSGT00940000167295	ENSGT00940000154629.A	ENSGT00940000154550.b	ENSGT00640000091563.b
Spotted gar	MODERN SPECIES	658	foxa3 (ENSLOCG00000014809)	nova2 (ENSLOCG00000014804)	polr1g (ENSLOCG00000014803)	ENSLOCG00000017723	eml2 (ENSLOCG00000014791)	ENSLOCG00000014786	ENSLOCG00000014781	CLIP3 (ENSLOCG00000014773)	alkbh6 (ENSLOCG00000014771)	si:ch211-137a8.2 (ENSLOCG00000014768)	ENSLOCG00000017722	zgc:162698 (ENSLOCG00000014761)	capns1b (ENSLOCG00000014756)	zgc:101731 (ENSLOCG00000014754)	klc3 (ENSLOCG00000014748)	ckmb (ENSLOCG00000014743) ##22	MARK4 (ENSLOCG00000014735)	ENSLOCG00000017721	EXOC3L2 (ENSLOCG00000014731) ##27	ENSLOCG00000014727	spint2 (ENSLOCG00000014723)	ENSLOCG00000014720	vaspa (ENSLOCG00000014718)	ccdc61 (ENSLOCG00000014713)	ENSLOCG00000014709	SUPT5H (ENSLOCG00000014703)	timm50 (ENSLOCG00000014699)	chp2 (ENSLOCG00000014696)	rnaset2l (ENSLOCG00000014694)	zgc:171927 (ENSLOCG00000014692)	ENSLOCG00000014690
Osteoglossocephalai	ANCESTRAL SPECIES	30	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000154411	ENSGT01100000263534.b	ENSGT01030000234576.D.a.b.a.b.b.b	ENSGT01030000234613.b.b.g ##27	ENSGT00950000182985.a.b.b	ENSGT00940000160348	ENSGT00940000165970	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	81	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.a ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b	ENSGT01100000263520.a.a.a.a.b.b.b.a.a	ENSGT01030000234613.b.b.g ##27	ENSGT00950000182985.a.b.b	ENSGT00940000160348	ENSGT00940000165970	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00940000167295
Asian bonytongue	MODERN SPECIES	1	eif3k (ENSSFOG00015006575)	ENSSFOG00015006561	DMWD (ENSSFOG00015028542)	ENSSFOG00015006533	hif1al (ENSSFOG00015006520)	zgc:152863 (ENSSFOG00015006509)	pak4 (ENSSFOG00015006490)	ccdc9 (ENSSFOG00015006444)	bbc3 (ENSSFOG00015029334)	sae1 (ENSSFOG00015006393)	ZC3H4 (ENSSFOG00015006342)	zgc:154093 (ENSSFOG00015006333)	ercc2 (ENSSFOG00015006246)	klc3 (ENSSFOG00015006201)	ENSSFOG00015031564	ckmb (ENSSFOG00015006169) ##22	MARK4 (ENSSFOG00015006137)	ENSSFOG00015024471	ENSSFOG00015031320	ENSSFOG00015006083	ENSSFOG00015033344	ppp1r14ab (ENSSFOG00015027845)	spint2 (ENSSFOG00015006018)	ENSSFOG00015006000	supt5h (ENSSFOG00015005973)	ENSSFOG00015028187	ENSSFOG00015028673	cox7a1 (ENSSFOG00015032931)	chp2 (ENSSFOG00015005910)	dlc (ENSSFOG00015005889)	timm50 (ENSSFOG00015005832)
P. kingsleyae	MODERN SPECIES	130	eif3k (ENSPKIG00000007558)	ENSPKIG00000007516	ENSPKIG00000007489	DMWD (ENSPKIG00000007462)	ENSPKIG00000007424	hif1al (ENSPKIG00000007313)	zgc:152863 (ENSPKIG00000007246)	pak4 (ENSPKIG00000007192)	ccdc9 (ENSPKIG00000007100)	bbc3 (ENSPKIG00000007058)	sae1 (ENSPKIG00000007025)	ZC3H4 (ENSPKIG00000006977)	zgc:154093 (ENSPKIG00000006963)	ercc2 (ENSPKIG00000006883)	klc3 (ENSPKIG00000006810)	ckmb (ENSPKIG00000006752) ##22	MARK4 (ENSPKIG00000006683)	ENSPKIG00000006646	ENSPKIG00000006616	ENSPKIG00000006563	ENSPKIG00000006498 ##27	ppp1r14ab (ENSPKIG00000006456)	spint2 (ENSPKIG00000006432)	ENSPKIG00000006419	ENSPKIG00000006379	supt5h (ENSPKIG00000006261)	rnaset2l (ENSPKIG00000006201)	cox7a1 (ENSPKIG00000006175)	chp2 (ENSPKIG00000006129)	dlc (ENSPKIG00000006082)	timm50 (ENSPKIG00000006036)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.b ##22
P. kingsleyae	MODERN SPECIES	63	ENSPKIG00000013858	ENSPKIG00000013888	septin6 (ENSPKIG00000013948)	NKRF (ENSPKIG00000013989)	ube2a (ENSPKIG00000014011)	ENSPKIG00000014043	lnx2b (ENSPKIG00000014088)	ENSPKIG00000014162	chic1 (ENSPKIG00000014193)	ENSPKIG00000014211	kdrl (ENSPKIG00000014282)	DLG3 (ENSPKIG00000014439)	ENSPKIG00000014566	ENSPKIG00000014618	arr3a (ENSPKIG00000014709)	CKM (ENSPKIG00000014792) ##22	ENSPKIG00000014820	ENSPKIG00000014842	FNDC3A (ENSPKIG00000014879)	rb1 (ENSPKIG00000014925)	b4galt4 (ENSPKIG00000014983)	zbtb20 (ENSPKIG00000015018)	dub (ENSPKIG00000015032)	ndufc2 (ENSPKIG00000015053)	alg8 (ENSPKIG00000015070)	ccdc90b (ENSPKIG00000015115)	pcf11 (ENSPKIG00000015149)	rab30 (ENSPKIG00000015202)	ENSPKIG00000015222	nars2 (ENSPKIG00000015253)	USP35 (ENSPKIG00000015301)
Asian bonytongue	MODERN SPECIES	19	ENSSFOG00015026534	ENSSFOG00015006311	ENSSFOG00015005902	ENSSFOG00015003656	ENSSFOG00015026890	ENSSFOG00015006037	ENSSFOG00015025988	ENSSFOG00015005946	ENSSFOG00015031089	TRPC7 (ENSSFOG00015003208)	PCDH1 (ENSSFOG00015005856)	rb1 (ENSSFOG00015005831)	alg8 (ENSSFOG00015005782)	zbtb20 (ENSSFOG00015005766)	birc2 (ENSSFOG00015005720)	ENSSFOG00015005699 ##22	ENSSFOG00015005665	TAGLN (ENSSFOG00015005647)	tppp2 (ENSSFOG00015032320)	fpgt (ENSSFOG00015005604)	ENSSFOG00015029428	alkbh6 (ENSSFOG00015005576)	ENSSFOG00015005535	zgc:153990 (ENSSFOG00015005526)	scn4bb (ENSSFOG00015005459)	ENSSFOG00015005441	DSCAML1 (ENSSFOG00015005337)	PRKD2 (ENSSFOG00015005283)	slc1a5 (ENSSFOG00015005253)	ENSSFOG00015026092	ARHGAP35 (ENSSFOG00015005210)
Clupeocephala	ANCESTRAL SPECIES	265											ENSGT00940000164977.a	ENSGT00390000002548	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000154411	ENSGT01100000263534.b	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b	ENSGT00950000183079.A.b.c.b
Otomorpha	ANCESTRAL SPECIES	65	ENSGT00940000155162.o.b	ENSGT00940000163520.B	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01070000253869	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00940000166502	ENSGT00940000156455
Otophysi	ANCESTRAL SPECIES	93	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01070000253869	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b	ENSGT00950000183079.A.b.c.b	ENSGT00980000198690	ENSGT00940000161656	ENSGT00940000166502
Cyprinoidei	ANCESTRAL SPECIES	4	ENSGT00940000155713	ENSGT00940000156995.a	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00980000199806	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.a.b	ENSGT00950000183052.b.c.b.a.a.a	ENSGT00390000009083.m.a	ENSGT00940000157853.a	ENSGT00940000159493	ENSGT00950000182849.A.f.a.a	ENSGT00940000159222	ENSGT00390000009300.b	ENSGT00940000160099	ENSGT00940000161353	ENSGT00390000016584	ENSGT00940000155838.e	ENSGT00940000155772.a.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	155	ENSGT00390000011000.b	ENSGT00940000155768.B.p	ENSGT00940000155768.B.o.a	ENSGT00390000010722.a	ENSGT00940000155797.l	ENSGT00940000157554.t.b	ENSGT00390000007149.n	ENSGT00390000003413.eb	ENSGT00500000044913.k	ENSGT01020000230625.a	ENSGT00550000075007.x	ENSGT00940000160011.i	ENSGT00940000165053.a	ENSGT00950000182970.C.a	ENSGT00940000167306.c	ENSGT00950000182772.A.a.a.b.c.a ##22	ENSGT00940000159555.v.a.i	ENSGT00730000113263.c.a.b	ENSGT00390000009083.m.a.c.a	ENSGT00940000157853.a.a	ENSGT00940000159493.c	ENSGT00950000182849.A.f.a.a.b	ENSGT00940000159222.e	ENSGT00390000009300.b.d	ENSGT00940000160099.j	ENSGT00940000161353.i	ENSGT00390000016584.b	ENSGT00940000155838.e.a	ENSGT00940000155772.a.a.c	ENSGT00940000159111.c.b	ENSGT00940000157662.g.b.e
Goldfish	MODERN SPECIES	34	PHF12 (ENSCARG00000015532)	SEZ6 (ENSCARG00000015153)	MYO18A (ENSCARG00000012836)	appbp2 (ENSCARG00000012653)	ENSCARG00000012146	ENSCARG00000012022	tmem97 (ENSCARG00000012018)	ift20 (ENSCARG00000012010)	rad1 (ENSCARG00000011987)	bbc3 (ENSCARG00000011979)	sae1 (ENSCARG00000011861)	ZC3H4 (ENSCARG00000011807)	zgc:154093 (ENSCARG00000011795)	ercc2 (ENSCARG00000011242)	klc3 (ENSCARG00000011201)	ckmb (ENSCARG00000011175) ##22	MARK4 (ENSCARG00000011121)	ENSCARG00000011110	ENSCARG00000011097	ENSCARG00000025025	hmbsb (ENSCARG00000024958)	NLRX1 (ENSCARG00000024927)	ENSCARG00000024904	UBE4A (ENSCARG00000024634)	KMT2A (ENSCARG00000024259)	c1qtnf5 (ENSCARG00000024235)	RNF26 (ENSCARG00000024230)	mcamb (ENSCARG00000024186)	cbl (ENSCARG00000023955)	GRIK4 (ENSCARG00000023840)	ARHGEF12 (ENSCARG00000023683)
Cyprininae_a	ANCESTRAL SPECIES	28	ENSGT00940000155599.i.a.a.k	ENSGT00940000155713.y.b	ENSGT00940000156995.a.a	ENSGT00390000011000.b	ENSGT00940000155768.B.o.a	ENSGT00390000010722.a	ENSGT00940000155797.l	ENSGT00390000003413.eb	ENSGT00500000044913.k	ENSGT01020000230625.a	ENSGT00550000075007.x	ENSGT00940000160011.i	ENSGT00940000165053.a	ENSGT00950000182970.C.a	ENSGT00940000167306.c	ENSGT00950000182772.A.a.a.b.c.a ##22	ENSGT00940000159555.v.a.i	ENSGT00390000009083.m.a.c.a	ENSGT00940000157853.a.a	ENSGT00940000159493.c	ENSGT00950000182849.A.f.a.a.b	ENSGT00940000159222.e	ENSGT00390000009300.b.d	ENSGT00940000160099.j	ENSGT00940000161353.i	ENSGT00390000016584.b	ENSGT00940000155838.e.a	ENSGT00940000155772.a.a.c	ENSGT00940000159111.c.b	ENSGT00940000157662.g.b.e	ENSGT00390000008162.f.d
Common carp reference	MODERN SPECIES	39	PHF12 (ENSCCRG00000026409)	SEZ6 (ENSCCRG00000027042)	ENSCCRG00000077050	pipox (ENSCCRG00000063503)	ENSCCRG00000002959	appbp2 (ENSCCRG00000001457)	ENSCCRG00000001614	rad1 (ENSCCRG00000062151)	ift20 (ENSCCRG00000031691)	bbc3 (ENSCCRG00000081368)	sae1 (ENSCCRG00000046535)	ENSCCRG00000046512	zgc:154093 (ENSCCRG00000080440)	klc3 (ENSCCRG00000077799)	ercc2 (ENSCCRG00000046496)	ckmb (ENSCCRG00000050213) ##22	ENSCCRG00000050212	ENSCCRG00000026327	ENSCCRG00000004943	ENSCCRG00000077327	hmbsb (ENSCCRG00000026061)	abcg4b (ENSCCRG00000026044)	ENSCCRG00000025947	phykpl (ENSCCRG00000062524)	ENSCCRG00000024426	ENSCCRG00000077571	c1qtnf5 (ENSCCRG00000024367)	RNF26 (ENSCCRG00000071103)	mcamb (ENSCCRG00000024350)	cbl (ENSCCRG00000024248)	ENSCCRG00000063661
Golden-line barbel	MODERN SPECIES	310						ENSSGRG00000041334	ENSSGRG00000041324	ift20 (ENSSGRG00000041321)	rad1 (ENSSGRG00000041182)	bbc3 (ENSSGRG00000041173)	sae1 (ENSSGRG00000040994)	ZC3H4 (ENSSGRG00000040989)	zgc:154093 (ENSSGRG00000040988)	ercc2 (ENSSGRG00000039718)	klc3 (ENSSGRG00000039423)	ckmb (ENSSGRG00000039348) ##22	ENSSGRG00000039345	MARK4 (ENSSGRG00000039341)	ENSSGRG00000039337	hmbsb (ENSSGRG00000039326)	abcg4b (ENSSGRG00000039324)	NLRX1 (ENSSGRG00000039221)	NHERF4 (ENSSGRG00000039218)	phykpl (ENSSGRG00000039148)	UBE4A (ENSSGRG00000038410)	KMT2A (ENSSGRG00000038389)	c1qtnf5 (ENSSGRG00000038385)	RNF26 (ENSSGRG00000038381)	mcamb (ENSSGRG00000038359)	cbl (ENSSGRG00000037865)	ccdc153 (ENSSGRG00000037858)
Cyprininae	ANCESTRAL SPECIES	13	ENSGT00390000011000.a	ENSGT00940000155768.B.o.b	ENSGT00390000010722.b	ENSGT00940000154169.A.g	ENSGT00940000155797.k	ENSGT00940000157554.t.a	ENSGT00390000007149.m	ENSGT00390000003413.db	ENSGT00500000044913.l	ENSGT01020000230625.b	ENSGT00550000075007.w	ENSGT00940000160011.j	ENSGT00940000165053.b	ENSGT00950000182970.C.b	ENSGT00940000167306.d	ENSGT00950000182772.A.a.a.b.c.b ##22	ENSGT00940000159555.v.a.j	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.a.b.a	ENSGT00950000183052.b.c.b.a.a.a	ENSGT00390000009083.m.a.c.b	ENSGT00940000157853.a.b	ENSGT00940000159493.d	ENSGT00950000182849.A.f.a.a.a	ENSGT00940000159222.f	ENSGT00390000009300.b.c	ENSGT00940000160099.i	ENSGT00940000161353.j	ENSGT00390000016584.a	ENSGT00940000155838.e.b	ENSGT00940000155772.a.a.d
Cyprininae_a	ANCESTRAL SPECIES	27	ENSGT00390000011000.a	ENSGT00940000155768.B.o.b	ENSGT00390000010722.b	ENSGT00940000154169.A.g	ENSGT00940000155797.k	ENSGT00940000157554.t.a	ENSGT00390000007149.m	ENSGT00390000003413.db	ENSGT00500000044913.l	ENSGT01020000230625.b	ENSGT00550000075007.w	ENSGT00940000160011.j	ENSGT00940000165053.b	ENSGT00950000182970.C.b	ENSGT00940000167306.d	ENSGT00950000182772.A.a.a.b.c.b ##22	ENSGT00940000159555.v.a.j	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.a.b.a	ENSGT00950000183052.b.c.b.a.a.a	ENSGT00390000009083.m.a.c.b	ENSGT00940000157853.a.b	ENSGT00940000159493.d	ENSGT00950000182849.A.f.a.a.a	ENSGT00940000159222.f	ENSGT00390000009300.b.c	ENSGT00940000160099.i	ENSGT00940000161353.j	ENSGT00390000016584.a	ENSGT00940000155838.e.b	ENSGT00940000155772.a.a.d
Golden-line barbel	MODERN SPECIES	71	pipox (ENSSGRG00000040892)	MYO18A (ENSSGRG00000040645)	ENSSGRG00000040624	appbp2 (ENSSGRG00000040615)	ENSSGRG00000039418	ENSSGRG00000039393	tmem97 (ENSSGRG00000039392)	ift20 (ENSSGRG00000039391)	rad1 (ENSSGRG00000039372)	bbc3 (ENSSGRG00000039371)	sae1 (ENSSGRG00000039369)	ZC3H4 (ENSSGRG00000039367)	zgc:154093 (ENSSGRG00000039364)	ercc2 (ENSSGRG00000039303)	klc3 (ENSSGRG00000039105)	ckmb (ENSSGRG00000039019) ##22	ENSSGRG00000039017	MARK4 (ENSSGRG00000038997)	ENSSGRG00000038992	ENSSGRG00000038987	hmbsb (ENSSGRG00000038985)	abcg4b (ENSSGRG00000038983)	NLRX1 (ENSSGRG00000038981)	NHERF4 (ENSSGRG00000038980)	phykpl (ENSSGRG00000038973)	UBE4A (ENSSGRG00000038944)	KMT2A (ENSSGRG00000038930)	c1qtnf5 (ENSSGRG00000038924)	RNF26 (ENSSGRG00000038921)	mcamb (ENSSGRG00000038916)	cbl (ENSSGRG00000038555)
Common carp reference	MODERN SPECIES	26	pipox (ENSCCRG00000027026)	ENSCCRG00000026530	appbp2 (ENSCCRG00000028781)	ENSCCRG00000028790	ENSCCRG00000028872	ENSCCRG00000057051	ENSCCRG00000001643	ift20 (ENSCCRG00000001695)	rad1 (ENSCCRG00000001705)	bbc3 (ENSCCRG00000046689)	sae1 (ENSCCRG00000072097)	ENSCCRG00000060992	zgc:154093 (ENSCCRG00000060860)	ercc2 (ENSCCRG00000050233)	klc3 (ENSCCRG00000050218)	ckmb (ENSCCRG00000069118) ##22	ENSCCRG00000051025	ENSCCRG00000064076	ENSCCRG00000058175	ENSCCRG00000041596	ENSCCRG00000075762	abcg4b (ENSCCRG00000041631)	ENSCCRG00000026027	ENSCCRG00000063698	phykpl (ENSCCRG00000025928)	ENSCCRG00000025958	c1qtnf5 (ENSCCRG00000024371)	mcamb (ENSCCRG00000070450)	cbl (ENSCCRG00000024361)	ENSCCRG00000064468	ccdc153 (ENSCCRG00000024240)
Goldfish	MODERN SPECIES	6	pipox (ENSCARG00000007460)	MYO18A (ENSCARG00000007619)	appbp2 (ENSCARG00000007981)	ENSCARG00000008031	ENSCARG00000008150	ENSCARG00000009901	tmem97 (ENSCARG00000009911)	ift20 (ENSCARG00000009916)	rad1 (ENSCARG00000009927)	bbc3 (ENSCARG00000009949)	sae1 (ENSCARG00000009963)	ZC3H4 (ENSCARG00000010009)	zgc:154093 (ENSCARG00000010038)	ercc2 (ENSCARG00000010071)	klc3 (ENSCARG00000010175)	ckmb (ENSCARG00000010198) ##22	MARK4 (ENSCARG00000010212)	ENSCARG00000010305	ENSCARG00000010313	ENSCARG00000010327	hmbsb (ENSCARG00000010396)	abcg4b (ENSCARG00000011305)	NLRX1 (ENSCARG00000012491)	NHERF4 (ENSCARG00000012509)	phykpl (ENSCARG00000012534)	UBE4A (ENSCARG00000013021)	c1qtnf5 (ENSCARG00000014283)	RNF26 (ENSCARG00000014287)	mcamb (ENSCARG00000014291)	cbl (ENSCARG00000014330)	ccdc153 (ENSCARG00000014886)
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES		ENSGT01090000260005.a.b.a.b.b.j.c	ENSGT00940000158109.d	ENSGT00810000125570.e	ENSGT00940000160651.c	ENSGT00530000064671.e.a	ENSGT00940000159396.g.a	ENSGT00940000156610.a	ENSGT00390000000306.a	ENSGT01100000263504.a.a	ENSGT00940000164977.a.d	ENSGT00390000002548.h	ENSGT01030000234642.a.b.b.d.b.c.b.a	ENSGT00910000144115.b.bc.b.a	ENSGT00940000158344.a.b.b	ENSGT00940000161313.g	ENSGT00950000182772.A.a.a.b.d.a ##22	ENSGT00940000159555.v.b.e	ENSGT01030000234613.b.b.h.c ##27	ENSGT00950000182985.a.b.a.d	ENSGT00940000164418.a.b.a.a	ENSGT00450000040324.a.a.a.b	ENSGT00940000155478.hb.a.b.d	ENSGT00940000155573.g.b.c	ENSGT00950000183079.A.b.c.b.f	ENSGT00940000163331.a.a.c	ENSGT00940000155242.e	ENSGT00990000205544.d	ENSGT00390000002414.qb	ENSGT00940000165703.d	ENSGT00730000111220.e	ENSGT00940000161362.e
Goldfish	MODERN SPECIES	44	LRCH2 (ENSCARG00000010637)	il13ra2 (ENSCARG00000010626)	tagln2 (ENSCARG00000010611)	ENSCARG00000010606	tppp2 (ENSCARG00000010599)	ENSCARG00000010590	nfkbib (ENSCARG00000010573)	gjd1a (ENSCARG00000010565)	ENSCARG00000010552	crx (ENSCARG00000010543)	kptn (ENSCARG00000010208)	hnrnpl (ENSCARG00000008888)	srsf7a (ENSCARG00000008826)	slc8a2a (ENSCARG00000008802)	nccrp1 (ENSCARG00000008781)	ckma (ENSCARG00000008764) ##22	MARK4 (ENSCARG00000008209)	ENSCARG00000008175 ##27	ppp1r14aa (ENSCARG00000008164)	dlb (ENSCARG00000008146)	zgc:153990 (ENSCARG00000008139)	capns1a (ENSCARG00000008117)	nova1 (ENSCARG00000008095)	micu2 (ENSCARG00000008055)	rhogc (ENSCARG00000008047)	taf1 (ENSCARG00000007562)	zgc:158432 (ENSCARG00000007445)	igbp1 (ENSCARG00000007428)	wnt11f2 (ENSCARG00000007413)	eda (ENSCARG00000007395)	nalf2 (ENSCARG00000007380)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000159971.i.a	ENSGT00940000155162.o.a.c	ENSGT00940000163520.A.b.d.a.a	ENSGT00940000153875.d.a.y	ENSGT01100000263516.a.a.b.a.a	ENSGT00940000159120.e.b	ENSGT01090000260005.a.b.a.b.b.j.c	ENSGT00390000000306.a	ENSGT01100000263504.a.a	ENSGT00940000164977.a.d	ENSGT00390000002548.h	ENSGT01030000234642.a.b.b.d.b.c.b.a	ENSGT00910000144115.b.bc.b.a	ENSGT00940000158344.a.b.b	ENSGT00940000161313.g	ENSGT00950000182772.A.a.a.b.d.a ##22	ENSGT00940000159555.v.b.e	ENSGT01030000234613.b.b.h.c ##27	ENSGT00950000182985.a.b.a.d	ENSGT00940000164418.a.b.a.a	ENSGT00450000040324.a.a.a.b	ENSGT00940000155478.hb.a.b.d	ENSGT00510000048626.l	ENSGT00940000155573.g.b.c	ENSGT00950000183079.A.b.c.b.f	ENSGT00940000163331.a.a.c	ENSGT00940000155242.e	ENSGT00990000205544.d	ENSGT00390000002414.qb	ENSGT00940000165703.d	ENSGT00730000111220.e
Common carp reference	MODERN SPECIES	7	ENSCCRG00000058465	ENSCCRG00000018884	il13ra2 (ENSCCRG00000041886)	tagln2 (ENSCCRG00000050033)	ENSCCRG00000050034	ENSCCRG00000079881	nfkbib (ENSCCRG00000057077)	gjd1a (ENSCCRG00000051184)	ENSCCRG00000077888	crx (ENSCCRG00000081022)	kptn (ENSCCRG00000015307)	hnrnpl (ENSCCRG00000026212)	srsf7a (ENSCCRG00000051088)	slc8a2a (ENSCCRG00000001445)	nccrp1 (ENSCCRG00000001397)	ckma (ENSCCRG00000065693) ##22	ENSCCRG00000057555	ENSCCRG00000029329	ENSCCRG00000029333 ##27	dlb (ENSCCRG00000055242)	zgc:153990 (ENSCCRG00000029380)	capns1a (ENSCCRG00000029351)	alkbh6 (ENSCCRG00000029381)	nova1 (ENSCCRG00000068281)	micu2 (ENSCCRG00000077606)	rhogc (ENSCCRG00000029338)	taf1 (ENSCCRG00000029372)	zgc:158432 (ENSCCRG00000029716)	igbp1 (ENSCCRG00000029727)	wnt11f2 (ENSCCRG00000046476)	eda (ENSCCRG00000066091)
Golden-line barbel	MODERN SPECIES	214	zgc:163098 (ENSSGRG00000034592)	LRCH2 (ENSSGRG00000034594)	il13ra2 (ENSSGRG00000034599)	tagln2 (ENSSGRG00000034601)	ENSSGRG00000034616	tppp2 (ENSSGRG00000034617)	nfkbib (ENSSGRG00000034619)	gjd1a (ENSSGRG00000034620)	ENSSGRG00000034623	crx (ENSSGRG00000034680)	kptn (ENSSGRG00000034683)	hnrnpl (ENSSGRG00000034698)	srsf7a (ENSSGRG00000035091)	slc8a2a (ENSSGRG00000035095)	nccrp1 (ENSSGRG00000035100)	ckma (ENSSGRG00000035122) ##22	ENSSGRG00000035881	ENSSGRG00000036725 ##27	ppp1r14aa (ENSSGRG00000036729)	dlb (ENSSGRG00000036730)	capns1a (ENSSGRG00000036731)	alkbh6 (ENSSGRG00000036732)	nova1 (ENSSGRG00000036733)	micu2 (ENSSGRG00000036734)	rhogc (ENSSGRG00000036735)	taf1 (ENSSGRG00000036747)	igbp1 (ENSSGRG00000037451)	wnt11f2 (ENSSGRG00000037452)	eda (ENSSGRG00000037453)	nalf2 (ENSSGRG00000037455)	efnb1 (ENSSGRG00000037456)
Cyprininae	ANCESTRAL SPECIES	177	ENSGT00940000160039.h	ENSGT00940000159971.i.b	ENSGT00940000155162.o.a.d	ENSGT00940000153875.d.a.z	ENSGT01100000263516.a.a.b.b	ENSGT00940000159120.e.a	ENSGT01090000260005.a.b.a.b.b.j.d	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a.c	ENSGT00390000002548.g	ENSGT01030000234642.a.b.b.d.b.c.b.b	ENSGT00910000144115.b.bc.b.b	ENSGT00940000158344.a.b.a	ENSGT00940000161313.h	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.d.b ##22	ENSGT00940000159555.v.b.f	ENSGT01030000234613.b.b.h.d ##27	ENSGT00950000182985.a.b.a.c	ENSGT00940000164418.a.b.a.b	ENSGT00450000040324.a.a.a.a	ENSGT00940000155478.hb.a.b.c.b	ENSGT00510000048626	ENSGT00940000155573.g.b.d	ENSGT00950000183079.A.b.c.b.e	ENSGT00940000163331.a.a.d	ENSGT00940000155242.f	ENSGT00990000205544.c	ENSGT00390000002414.pb	ENSGT00940000165703.c	ENSGT00730000111220.f
Cyprininae_a	ANCESTRAL SPECIES	22	ENSGT00390000010687.a.b.e.b	ENSGT00940000160039.h	ENSGT00940000159971.i.b	ENSGT00940000155162.o.a.d	ENSGT00940000153875.d.a.z	ENSGT01100000263516.a.a.b.b	ENSGT00940000159120.e.a	ENSGT01090000260005.a.b.a.b.b.j.d	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a.c	ENSGT00390000002548.g	ENSGT01030000234642.a.b.b.d.b.c.b.b	ENSGT00910000144115.b.bc.b.b	ENSGT00940000158344.a.b.a	ENSGT00940000161313.h	ENSGT00950000182772.A.a.a.b.d.b ##22	ENSGT00940000159555.v.b.f	ENSGT00950000182985.a.b.a.c	ENSGT00940000164418.a.b.b	ENSGT00940000164418.a.b.a.b	ENSGT00450000040324.a.a.a.a	ENSGT00940000155478.hb.a.b.c.b	ENSGT00510000048626.k	ENSGT00940000155573.g.b.d	ENSGT00950000183079.A.b.c.b.e	ENSGT00940000163331.a.a.d	ENSGT00940000155242.f	ENSGT00990000205544.c	ENSGT00390000002414.pb	ENSGT00940000165703.c	ENSGT00730000111220.f
Common carp reference	MODERN SPECIES	15	ENSCCRG00000007998	zgc:163098 (ENSCCRG00000066974)	ENSCCRG00000060651	il13ra2 (ENSCCRG00000009320)	tagln2 (ENSCCRG00000009336)	ENSCCRG00000036822	ENSCCRG00000051188	nfkbib (ENSCCRG00000012260)	gjd1a (ENSCCRG00000012255)	crx (ENSCCRG00000079912)	kptn (ENSCCRG00000027527)	hnrnpl (ENSCCRG00000015395)	srsf7a (ENSCCRG00000051085)	slc8a2a (ENSCCRG00000051082)	nccrp1 (ENSCCRG00000051077)	ckma (ENSCCRG00000075938) ##22	ENSCCRG00000063598	ENSCCRG00000024671 ##27	dlb (ENSCCRG00000029341)	zgc:153990 (ENSCCRG00000068105)	alkbh6 (ENSCCRG00000062697)	nova1 (ENSCCRG00000054430)	rhogc (ENSCCRG00000068992)	micu2 (ENSCCRG00000029395)	taf1 (ENSCCRG00000004961)	zgc:158432 (ENSCCRG00000004766)	igbp1 (ENSCCRG00000004755)	wnt11f2 (ENSCCRG00000004745)	eda (ENSCCRG00000071662)	nalf2 (ENSCCRG00000046471)	efnb1 (ENSCCRG00000066488)
Golden-line barbel	MODERN SPECIES	347	ENSSGRG00000030859	ENSSGRG00000030862	il13ra2 (ENSSGRG00000030863)	tagln2 (ENSSGRG00000030864)	tppp2 (ENSSGRG00000030865)	ENSSGRG00000030866	nfkbib (ENSSGRG00000030867)	gjd1a (ENSSGRG00000030868)	ENSSGRG00000030869	crx (ENSSGRG00000030889)	kptn (ENSSGRG00000030891)	hnrnpl (ENSSGRG00000030916)	srsf7a (ENSSGRG00000031401)	slc8a2a (ENSSGRG00000031402)	nccrp1 (ENSSGRG00000031403)	ckma (ENSSGRG00000031408) ##22	ENSSGRG00000031950	ENSSGRG00000031952	ppp1r14aa (ENSSGRG00000032006)	ENSSGRG00000032007	zgc:153990 (ENSSGRG00000032008)	capns1a (ENSSGRG00000032009)	alkbh6 (ENSSGRG00000032010)	nova1 (ENSSGRG00000032012)	micu2 (ENSSGRG00000032013)	taf1 (ENSSGRG00000032015)	zgc:158432 (ENSSGRG00000032365)	igbp1 (ENSSGRG00000032368)	wnt11f2 (ENSSGRG00000032369)	eda (ENSSGRG00000032373)	nalf2 (ENSSGRG00000032375)
Goldfish	MODERN SPECIES	23	il13ra2 (ENSCARG00000021178)	tagln2 (ENSCARG00000021160)	ENSCARG00000021150	tppp2 (ENSCARG00000021143)	ENSCARG00000021138	nfkbib (ENSCARG00000021130)	gjd1a (ENSCARG00000021120)	ENSCARG00000021114	crx (ENSCARG00000021105)	ENSCARG00000021089	hnrnpl (ENSCARG00000019858)	srsf7a (ENSCARG00000019792)	slc8a2a (ENSCARG00000019785)	nccrp1 (ENSCARG00000019777)	ENSCARG00000019772	ckma (ENSCARG00000019747) ##22	ENSCARG00000019607	ENSCARG00000019587 ##27	ppp1r14aa (ENSCARG00000019580)	dlb (ENSCARG00000019565)	zgc:153990 (ENSCARG00000019554)	capns1a (ENSCARG00000019538)	alkbh6 (ENSCARG00000019529)	nova1 (ENSCARG00000019504)	micu2 (ENSCARG00000019467)	rhogc (ENSCARG00000019459)	ENSCARG00000019434	igbp1 (ENSCARG00000019428)	wnt11f2 (ENSCARG00000019417)	eda (ENSCARG00000019414)	nalf2 (ENSCARG00000019407)
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	6	MYO18A (ENSDARG00000061862)	appbp2 (ENSDARG00000007566)	ENSDARG00000097871	USP6 (ENSDARG00000061895)	ENSDARG00000086369	ENSDARG00000097770	tmem97 (ENSDARG00000040553)	ift20 (ENSDARG00000040556)	rad1 (ENSDARG00000040559)	bbc3 (ENSDARG00000069282)	sae1 (ENSDARG00000010487)	ZC3H4 (ENSDARG00000078355)	zgc:154093 (ENSDARG00000055897)	ercc2 (ENSDARG00000021985)	klc3 (ENSDARG00000055965)	ckmb (ENSDARG00000040565) ##22	MARK4 (ENSDARG00000024966)	ENSDARG00000069270	ENSDARG00000096614	ENSDARG00000075834	ENSDARG00000096575	hmbsb (ENSDARG00000055991)	abcg4b (ENSDARG00000078068)	NLRX1 (ENSDARG00000073724)	NHERF4 (ENSDARG00000040568)	phykpl (ENSDARG00000040566)	UBE4A (ENSDARG00000040571)	kmt2a (ENSDARG00000004537)	c1qtnf5 (ENSDARG00000056134)	RNF26 (ENSDARG00000074074)	mcamb (ENSDARG00000005368)
Zebrafish	MODERN SPECIES	20	il13ra2 (ENSDARG00000039436)	tagln2 (ENSDARG00000033466)	ENSDARG00000100476	tppp2 (ENSDARG00000035338)	ENSDARG00000101155	ENSDARG00000035339	nfkbib (ENSDARG00000030087)	gjd1a (ENSDARG00000111977)	h3f3c (ENSDARG00000033009)	crx (ENSDARG00000011989)	kptn (ENSDARG00000015937)	hnrnpl (ENSDARG00000035324)	srsf7a (ENSDARG00000035325)	slc8a2a (ENSDARG00000008912)	nccrp1 (ENSDARG00000035326)	ckma (ENSDARG00000035327) ##22	ENSDARG00000023914	ENSDARG00000008414 ##27	ppp1r14aa (ENSDARG00000011239)	dlb (ENSDARG00000004232)	zgc:153990 (ENSDARG00000053716)	capns1a (ENSDARG00000035329)	alkbh6 (ENSDARG00000077253)	ENSDARG00000116148	nova1 (ENSDARG00000020178)	micu2 (ENSDARG00000009939)	rhogc (ENSDARG00000028401)	taf1 (ENSDARG00000035330)	zgc:158432 (ENSDARG00000067806)	igbp1 (ENSDARG00000002184)	wnt11f2 (ENSDARG00000004256)
Characiphysae	ANCESTRAL SPECIES	22	ENSGT00940000155599.i.a.a.k	ENSGT00940000156995.a	ENSGT00390000011000	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00980000199806	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b.b	ENSGT01030000234613.b.b.g ##27	ENSGT00950000182985.a.b.b	ENSGT00940000160348.r	ENSGT00940000165970	ENSGT00990000205582	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00950000183143.d
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	8	pipox (ENSIPUG00000006072)	MYO18A (ENSIPUG00000006101)	appbp2 (ENSIPUG00000006419)	ENSIPUG00000006462	ENSIPUG00000006488	ENSIPUG00000006558	tmem97 (ENSIPUG00000006583)	ift20 (ENSIPUG00000006595)	rad1 (ENSIPUG00000006652)	bbc3 (ENSIPUG00000006673)	sae1 (ENSIPUG00000006681)	zc3h4 (ENSIPUG00000006735)	zgc:154093 (ENSIPUG00000006756)	ercc2 (ENSIPUG00000006778)	klc3 (ENSIPUG00000006861)	ckmb (ENSIPUG00000006893) ##22	mark4 (ENSIPUG00000006993)	ENSIPUG00000007067	ENSIPUG00000007076	exoc3l2 (ENSIPUG00000007095) ##27	ppp1r14a (ENSIPUG00000007184)	spint2 (ENSIPUG00000007188)	plekhg2 (ENSIPUG00000007203)	ENSIPUG00000007278	supt5h (ENSIPUG00000007308)	rnaset2l (ENSIPUG00000007500)	COX7A2 (ENSIPUG00000007538)	CHP2 (ENSIPUG00000007572)	dll3 (ENSIPUG00000007611)	timm50 (ENSIPUG00000007648)	tnfaip1 (ENSIPUG00000007673)
Channel catfish	MODERN SPECIES	20	tagln2 (ENSIPUG00000019407)	TPPP3 (ENSIPUG00000019389)	ENSIPUG00000019350	Nfkbib (ENSIPUG00000019330)	gjd1a (ENSIPUG00000019327)	H33 (ENSIPUG00000019301)	crx (ENSIPUG00000019241)	kptn (ENSIPUG00000019192)	hnrnpl (ENSIPUG00000019108)	srsf7a (ENSIPUG00000019088)	slc8a2a (ENSIPUG00000019066)	nccrp1 (ENSIPUG00000018986)	ENSIPUG00000018969	ENSIPUG00000018961	ENSIPUG00000018950	ckma (ENSIPUG00000018864) ##22	MARK4 (ENSIPUG00000018786)	ENSIPUG00000018764 ##27	CPI17 (ENSIPUG00000018746)	dlb (ENSIPUG00000018702)	Naif1 (ENSIPUG00000018692)	capns1 (ENSIPUG00000018683)	alkbh6 (ENSIPUG00000018672)	nova1 (ENSIPUG00000018651)	micu2 (ENSIPUG00000018592)	ENSIPUG00000018555	ENSIPUG00000018545	rpl36a (ENSIPUG00000018512)	glra4b (ENSIPUG00000018478)	aifm1 (ENSIPUG00000018310)	tnfsf10l4 (ENSIPUG00000018299)
Characiphysae_b	ANCESTRAL SPECIES	14	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00940000172043	ENSGT00940000155797	ENSGT00940000157554	ENSGT00390000018883	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b.b	ENSGT01030000234613.b.b.g ##27	ENSGT00950000182985.a.b.b	ENSGT00940000160348.r	ENSGT00940000165970	ENSGT00990000205582	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00950000183143.d
Characoidei	ANCESTRAL SPECIES	12	ENSGT00940000155768.B	ENSGT00390000010722	ENSGT00980000199806	ENSGT00940000155797	ENSGT00940000157554	ENSGT00390000018883	ENSGT00390000007149	ENSGT00390000003413	ENSGT00500000044913	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000156207.a.a.b.b.b	ENSGT01030000234613.b.b.g ##27	ENSGT00950000182985.a.b.b	ENSGT00940000160348.r	ENSGT00940000165970	ENSGT00990000205582	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C	ENSGT00950000183143.d
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	35	SEZ6 (ENSPNAG00000009752)	pipox (ENSPNAG00000009774)	MYO18A (ENSPNAG00000009895)	appbp2 (ENSPNAG00000001355)	ENSPNAG00000010097	ENSPNAG00000010127	tmem97 (ENSPNAG00000010149)	ift20 (ENSPNAG00000010164)	rad1 (ENSPNAG00000010191)	bbc3 (ENSPNAG00000010216)	sae1 (ENSPNAG00000010268)	ZC3H4 (ENSPNAG00000010326)	zgc:154093 (ENSPNAG00000010334)	ercc2 (ENSPNAG00000010434)	klc3 (ENSPNAG00000010510)	ckmb (ENSPNAG00000010530) ##22	MARK4 (ENSPNAG00000010635)	ENSPNAG00000010657	ENSPNAG00000010678	ENSPNAG00000010752	ENSPNAG00000010790 ##27	ppp1r14ab (ENSPNAG00000001443)	spint2 (ENSPNAG00000010814)	ENSPNAG00000010847	ENSPNAG00000010863	supt5h (ENSPNAG00000010925)	rnaset2l (ENSPNAG00000010950)	cox7a1 (ENSPNAG00000010970)	chp2 (ENSPNAG00000010994)	dlc (ENSPNAG00000011020)	timm50 (ENSPNAG00000001489)
Red-bellied piranha	MODERN SPECIES	606												ENSPNAG00000023919	ENSPNAG00000023933	ENSPNAG00000023947	ENSPNAG00000023960	ckma (ENSPNAG00000023987) ##22	ENSPNAG00000024036	ENSPNAG00000007047 ##27	ppp1r14aa (ENSPNAG00000007120)	dlb (ENSPNAG00000005853)	zgc:153990 (ENSPNAG00000024162)	CAPNS1 (ENSPNAG00000024191)	alkbh6 (ENSPNAG00000024220)	nova1 (ENSPNAG00000024351)	ENSPNAG00000024367	ENSPNAG00000024399
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES		SIK3 (ENSAMXG00000035205)	ENSAMXG00000007621	ENSAMXG00000034924	ENSAMXG00000029410	MPZL2 (ENSAMXG00000029789)	ENSAMXG00000007631	gap43 (ENSAMXG00000036239)	LSAMP (ENSAMXG00000007640)	ENSAMXG00000040555	ENSAMXG00000038334	ENSAMXG00000042567	ZC3H4 (ENSAMXG00000009037)	zgc:154093 (ENSAMXG00000009048)	ercc2 (ENSAMXG00000009052)	klc3 (ENSAMXG00000009064)	ckmb (ENSAMXG00000038743) ##22	MARK4 (ENSAMXG00000009077)	ENSAMXG00000035203	ENSAMXG00000042407	ENSAMXG00000024870	ENSAMXG00000038122	ENSAMXG00000033299	ENSAMXG00000009090 ##27	ppp1r14ab (ENSAMXG00000041500)	spint2 (ENSAMXG00000042875)	ENSAMXG00000009112	ENSAMXG00000040678	supt5h (ENSAMXG00000009128)	rnaset2l (ENSAMXG00000042594)	cox7a1 (ENSAMXG00000009169)	chp2 (ENSAMXG00000009173)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000029859	ENSAMXG00000001701	ENSAMXG00000001671	nfkbib (ENSAMXG00000001646)	gjd1a (ENSAMXG00000037293)	ENSAMXG00000038983	crx (ENSAMXG00000001577)	ENSAMXG00000044060	ENSAMXG00000001557	kptn (ENSAMXG00000001548)	hnrnpl (ENSAMXG00000001542)	srsf7a (ENSAMXG00000001532)	slc8a2a (ENSAMXG00000001525)	nccrp1 (ENSAMXG00000037998)	ENSAMXG00000001486	ckma (ENSAMXG00000020477) ##22	MARK4 (ENSAMXG00000001432)	ENSAMXG00000043279 ##27	ppp1r14aa (ENSAMXG00000042781)	dlb (ENSAMXG00000006640)	zgc:153990 (ENSAMXG00000034870)	CAPNS1 (ENSAMXG00000006676)	alkbh6 (ENSAMXG00000033280)	nova1 (ENSAMXG00000006702)	micu2 (ENSAMXG00000006705)	ENSAMXG00000038265	ENSAMXG00000033862	ENSAMXG00000036477	ENSAMXG00000031650	ENSAMXG00000006767	ENSAMXG00000031780
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	25	pipox (ENSEEEG00000024605)	MYO18A (ENSEEEG00000024595)	appbp2 (ENSEEEG00000024588)	ENSEEEG00000024587	ENSEEEG00000024586	ENSEEEG00000024585	tmem97 (ENSEEEG00000024584)	ift20 (ENSEEEG00000024583)	rad1 (ENSEEEG00000024582)	bbc3 (ENSEEEG00000024581)	sae1 (ENSEEEG00000024580)	ZC3H4 (ENSEEEG00000024579)	zgc:154093 (ENSEEEG00000024578)	ercc2 (ENSEEEG00000024576)	klc3 (ENSEEEG00000024575)	ckmb (ENSEEEG00000024569) ##22	MARK4 (ENSEEEG00000024563)	ENSEEEG00000024562	ENSEEEG00000024561	ENSEEEG00000024560	ENSEEEG00000024559 ##27	ppp1r14ab (ENSEEEG00000024558)	spint2 (ENSEEEG00000024557)	ENSEEEG00000024556	ENSEEEG00000024555	supt5h (ENSEEEG00000024554)	rnaset2l (ENSEEEG00000024553)	cox7a1 (ENSEEEG00000024552)	chp2 (ENSEEEG00000024551)	dlc (ENSEEEG00000024550)	timm50 (ENSEEEG00000024549)
Electric eel	MODERN SPECIES	764																ckma (ENSEEEG00000021979) ##22	ENSEEEG00000021975	ENSEEEG00000021974 ##27	ppp1r14aa (ENSEEEG00000021973)	dlb (ENSEEEG00000021971)	zgc:153990 (ENSEEEG00000021970)	CAPNS1 (ENSEEEG00000021969)	alkbh6 (ENSEEEG00000021967)	ENSEEEG00000021966	nova1 (ENSEEEG00000021965)	micu2 (ENSEEEG00000021959)
Clupeiformes	ANCESTRAL SPECIES	272								ENSGT00970000195665	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT01030000234613.b.b.g ##27	ENSGT00950000182985.a.b.b	ENSGT00940000176181	ENSGT00940000172731	ENSGT00440000037640	ENSGT00640000091563.b	ENSGT00940000154550.b	ENSGT00940000154629.A	ENSGT00940000164418.a.a	ENSGT01040000240503.C
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000019466	tbx5b (ENSCHAG00000019474)	PRPS1L1 (ENSCHAG00000019507)	ENSCHAG00000019684	ENSCHAG00000019691	abhd11 (ENSCHAG00000019756)	cldn3c (ENSCHAG00000019768)	CLDN4 (ENSCHAG00000019799)	CLDN4 (ENSCHAG00000019811)	ENSCHAG00000019815	ENSCHAG00000019821	cldn30 (ENSCHAG00000019839)	mettl27 (ENSCHAG00000019852)	nf2b (ENSCHAG00000019871)	nccrp1 (ENSCHAG00000020317)	ckma (ENSCHAG00000020329) ##22	MARK4 (ENSCHAG00000020370)	HAND1 (ENSCHAG00000020571)	sap30l (ENSCHAG00000020577)	GALNT10 (ENSCHAG00000020603)	ENSCHAG00000021015	abhd11 (ENSCHAG00000021850)	GRM5 (ENSCHAG00000021920)	RAB38 (ENSCHAG00000021932)	tmem135 (ENSCHAG00000021938)	ENSCHAG00000021982	HEPH (ENSCHAG00000021997)	slc43a2b (ENSCHAG00000022549)	PITPNA (ENSCHAG00000023894)	INPP5K (ENSCHAG00000023940)	ENSCHAG00000023967
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	10	tfdp2 (ENSDCDG00000017332)	atp1b3b (ENSDCDG00000017330)	TRIM50 (ENSDCDG00000017327)	ece2b (ENSDCDG00000014455)	ANO7 (ENSDCDG00000014319)	zgc:152863 (ENSDCDG00000014307)	ENSDCDG00000014299	ENSDCDG00000014291	ccdc9 (ENSDCDG00000014271)	bbc3 (ENSDCDG00000014263)	sae1 (ENSDCDG00000014249)	ZC3H4 (ENSDCDG00000014234)	zgc:154093 (ENSDCDG00000014222)	ercc2 (ENSDCDG00000013475)	klc3 (ENSDCDG00000013401)	ckmb (ENSDCDG00000013389) ##22	MARK4 (ENSDCDG00000010890)	ENSDCDG00000010813	ENSDCDG00000010809	ENSDCDG00000010805	ENSDCDG00000010801	ENSDCDG00000010795 ##27	ppp1r14ab (ENSDCDG00000010794)	ENSDCDG00000010790	ENSDCDG00000010787	supt5h (ENSDCDG00000008204)	rnaset2l (ENSDCDG00000007963)	cox7a1 (ENSDCDG00000007809)	chp2 (ENSDCDG00000007787)	dlc (ENSDCDG00000007774)	timm50 (ENSDCDG00000007769)
Denticle herring	MODERN SPECIES	16	ENSDCDG00000019281	ENSDCDG00000019277	ucp3 (ENSDCDG00000019271)	ucp2 (ENSDCDG00000019266)	dnajb13 (ENSDCDG00000019259)	mrpl48 (ENSDCDG00000019252)	rab6a (ENSDCDG00000019210)	plekhb1 (ENSDCDG00000019204)	GALNT10 (ENSDCDG00000018936)	TPCN1 (ENSDCDG00000018896)	ENSDCDG00000018889	sap30l (ENSDCDG00000018884)	slc8a2a (ENSDCDG00000018882)	nccrp1 (ENSDCDG00000018592)	ENSDCDG00000018570	ckma (ENSDCDG00000018538) ##22	ENSDCDG00000018533	ENSDCDG00000018523	ENSDCDG00000018520	cryba1b (ENSDCDG00000018516)	unc119b (ENSDCDG00000018513)	slc13a2 (ENSDCDG00000018144)	vtnb (ENSDCDG00000018117)	aldh3a2b (ENSDCDG00000017939)	ca4c (ENSDCDG00000017905)	asl (ENSDCDG00000017466)	zgc:152891 (ENSDCDG00000017429)	ncbp3 (ENSDCDG00000017405)	coro6 (ENSDCDG00000017359)	ENSDCDG00000014397	vaspa (ENSDCDG00000014129)
Euteleosteomorpha	ANCESTRAL SPECIES	139	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT01020000230625	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00980000198690	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000154411	ENSGT00940000153582.a.m.a.a.b.b.b.b.b	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00940000166947	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00510000048626	ENSGT00940000155573.g.b
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.q ##22
Tetraodon	MODERN SPECIES	26	noa1 (ENSTNIG00000002042)	cyp1b1 (ENSTNIG00000002045)	ENSTNIG00000002047	ENSTNIG00000002048	ENSTNIG00000002049	ENSTNIG00000002052	ENSTNIG00000002053	ENSTNIG00000002055	ptbp1a (ENSTNIG00000002060)	chchd2 (ENSTNIG00000002061)	ENSTNIG00000002062	FAM163B (ENSTNIG00000000629)	srd5a1 (ENSTNIG00000002063)	ENSTNIG00000002065	paqr3a (ENSTNIG00000002066)	ENSTNIG00000002067 ##22	ENSTNIG00000002068	ENSTNIG00000000257	ENSTNIG00000002069	ENSTNIG00000002070	ENSTNIG00000002071	TOB2 (ENSTNIG00000002073)	ENSTNIG00000019753	ENSTNIG00000002075	panx1a (ENSTNIG00000002076)	gmppb (ENSTNIG00000002077)	ENSTNIG00000002078	ENSTNIG00000002079	crlf3 (ENSTNIG00000011283)	ENSTNIG00000002080	ENSTNIG00000002081
Acanthomorphata	DUPLICATION
Acanthomorphata	ANCESTRAL SPECIES	14	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a
Cod	MODERN SPECIES	20	ENSGMOG00000034055	ENSGMOG00000032175	acer3 (ENSGMOG00000007373)	serpinh1a (ENSGMOG00000007382)	ENSGMOG00000008552	samsn1b (ENSGMOG00000008566)	usp25 (ENSGMOG00000008601)	ENSGMOG00000008623	bhlha9 (ENSGMOG00000008634)	ENSGMOG00000008639	ENSGMOG00000008664	ENSGMOG00000019843	hnrnpl (ENSGMOG00000008678)	slc8a2a (ENSGMOG00000008693)	nccrp1 (ENSGMOG00000008715)	ckma (ENSGMOG00000008778) ##22	ENSGMOG00000008788	ENSGMOG00000008814 ##27	ppp1r14aa (ENSGMOG00000011234)	dlb (ENSGMOG00000011226)	zgc:153990 (ENSGMOG00000011238)	capns1a (ENSGMOG00000011247)	nova1 (ENSGMOG00000011253)	ENSGMOG00000011261	ENSGMOG00000011273	ENSGMOG00000032800	ENSGMOG00000011282	VPS26B (ENSGMOG00000024935)	ENSGMOG00000003711	IGSF9B (ENSGMOG00000011998)	fez1 (ENSGMOG00000017749)
Euacanthomorphacea	ANCESTRAL SPECIES	19	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Pinecone sodierfish	MODERN SPECIES	5	ENSMMDG00005002977	ENSMMDG00005002970	akt2l (ENSMMDG00005002889)	ENSMMDG00005002862	CBLB (ENSMMDG00005002829)	alcama (ENSMMDG00005002424)	ZPLD1 (ENSMMDG00005002408)	picalma (ENSMMDG00005002360)	ENSMMDG00005002345	dlg2 (ENSMMDG00005002196)	BBX (ENSMMDG00005002185)	vps11 (ENSMMDG00005001933)	slc8a2a (ENSMMDG00005001268)	nccrp1 (ENSMMDG00005001218)	ENSMMDG00005001208	ckma (ENSMMDG00005018692) ##22	MARK4 (ENSMMDG00005018680)	ENSMMDG00005018675 ##27	ppp1r14aa (ENSMMDG00005018672)	dlb (ENSMMDG00005018642)	zgc:153990 (ENSMMDG00005018638)	capns1b (ENSMMDG00005018623)	nova1 (ENSMMDG00005018614)	kptn (ENSMMDG00005018610)	crx (ENSMMDG00005018609)	ENSMMDG00005018607	ARHGAP32 (ENSMMDG00005016404)	vps26bl (ENSMMDG00005016371)	jam3b (ENSMMDG00005016361)	IGSF9B (ENSMMDG00005016353)	ENSMMDG00005016347
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Tiger tail seahorse	MODERN SPECIES	497					ENSHCOG00000008839	samsn1b (ENSHCOG00000008824)	ENSHCOG00000008798	usp25 (ENSHCOG00000008781)	WSCD1 (ENSHCOG00000008680)	ENSHCOG00000008634	micu2 (ENSHCOG00000008610)	irf2bp1 (ENSHCOG00000008582)	hnrnpl (ENSHCOG00000008575)	slc8a2a (ENSHCOG00000008560)	nccrp1 (ENSHCOG00000008491)	ckma (ENSHCOG00000008473) ##22	MARK4 (ENSHCOG00000008450)	ENSHCOG00000008420 ##27	ppp1r14aa (ENSHCOG00000008414)	dlb (ENSHCOG00000008406)	zgc:153990 (ENSHCOG00000008391)	capns1b (ENSHCOG00000008383)	nova1 (ENSHCOG00000008366)	kptn (ENSHCOG00000008352)	crx (ENSHCOG00000008330)	ENSHCOG00000008323	ARHGAP32 (ENSHCOG00000008304)	ENSHCOG00000008040	vps26bl (ENSHCOG00000008033)	jam3b (ENSHCOG00000008022)	IGSF9B (ENSHCOG00000008003)
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Carangaria	ANCESTRAL SPECIES	16	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Pleuronectoidei	ANCESTRAL SPECIES	27	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Tongue sole	MODERN SPECIES	10	ENSCSEG00000018353	nf2b (ENSCSEG00000018208)	mettl27 (ENSCSEG00000018192)	ENSCSEG00000018182	sdf2 (ENSCSEG00000018175)	supt6h (ENSCSEG00000018147)	ENSCSEG00000018133	ENSCSEG00000018092	nsrp1 (ENSCSEG00000018083)	ssh2b (ENSCSEG00000018059)	ENSCSEG00000018045	coro6 (ENSCSEG00000018011)	hnrnpl (ENSCSEG00000017990)	slc8a2a (ENSCSEG00000017915)	nccrp1 (ENSCSEG00000017905)	ckma (ENSCSEG00000017890) ##22	MARK4 (ENSCSEG00000017841)	ENSCSEG00000017779 ##27	ppp1r14aa (ENSCSEG00000017768)	dlb (ENSCSEG00000017752)	zgc:153990 (ENSCSEG00000017741)	capns1b (ENSCSEG00000017727)	nova1 (ENSCSEG00000017718)	kptn (ENSCSEG00000017700)	crx (ENSCSEG00000017693)	ENSCSEG00000017680	ARHGAP32 (ENSCSEG00000017589)	vps26bl (ENSCSEG00000017567)	jam3b (ENSCSEG00000017560)	IGSF9B (ENSCSEG00000017515)	ENSCSEG00000017500
Turbot	MODERN SPECIES	16	sptlc1 (ENSSMAG00000007339)	ROR2 (ENSSMAG00000007314)	nfil3 (ENSSMAG00000007302)	auh (ENSSMAG00000007280)	syk (ENSSMAG00000007199)	ENSSMAG00000014929	ENSSMAG00000006988	ENSSMAG00000006975	ENSSMAG00000006929	ENSSMAG00000006862	ENSSMAG00000006823	ENSSMAG00000006800	ENSSMAG00000006742	ENSSMAG00000006702	ENSSMAG00000006696	ckma (ENSSMAG00000006685) ##22	ENSSMAG00000006616	ENSSMAG00000006566 ##27	ppp1r14aa (ENSSMAG00000006554)	dlb (ENSSMAG00000006534)	zgc:153990 (ENSSMAG00000006509)	capns1a (ENSSMAG00000006492)	nova1 (ENSSMAG00000006485)	ENSSMAG00000006441	Otx5 (ENSSMAG00000006403)	ENSSMAG00000006379	ENSSMAG00000006246	VPS26B (ENSSMAG00000006221)	ENSSMAG00000006198	IGSF9B (ENSSMAG00000006092)	ENSSMAG00000006073
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b	ENSGT00390000017627.b
Barramundi perch	MODERN SPECIES	94	ENSLCAG00010014996	acer3 (ENSLCAG00010014987)	serpinh1a (ENSLCAG00010014979)	GDPD5 (ENSLCAG00010014965)	samsn1b (ENSLCAG00010014951)	ENSLCAG00010014946	usp25 (ENSLCAG00010014316)	WSCD1 (ENSLCAG00010014206)	bhlha9 (ENSLCAG00010014204)	ENSLCAG00010014193	micu2 (ENSLCAG00010014180)	irf2bp1 (ENSLCAG00010014175)	hnrnpl (ENSLCAG00010014138)	slc8a2a (ENSLCAG00010014117)	nccrp1 (ENSLCAG00010014107)	ckma (ENSLCAG00010014042) ##22	ENSLCAG00010014025	MARK4 (ENSLCAG00010013981)	ENSLCAG00010013970 ##27	ppp1r14aa (ENSLCAG00010013967)	dlb (ENSLCAG00010013965)	zgc:153990 (ENSLCAG00010013964)	capns1b (ENSLCAG00010013962)	nova1 (ENSLCAG00010013957)	kptn (ENSLCAG00010013946)	crx (ENSLCAG00010013942)	ARHGAP32 (ENSLCAG00010013780)	vps26bl (ENSLCAG00010013747)	jam3b (ENSLCAG00010013743)	IGSF9B (ENSLCAG00010013717)	cfap58 (ENSLCAG00010013651)
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b	ENSGT00390000017627.b
Greater amberjack	MODERN SPECIES	39	acer3 (ENSSDUG00000019880)	serpinh1a (ENSSDUG00000019915)	GDPD5 (ENSSDUG00000019937)	samsn1b (ENSSDUG00000019956)	ENSSDUG00000019994	usp25 (ENSSDUG00000020007)	WSCD1 (ENSSDUG00000020105)	bhlha9 (ENSSDUG00000020126)	ENSSDUG00000020134	micu2 (ENSSDUG00000020164)	irf2bp1 (ENSSDUG00000020191)	hnrnpl (ENSSDUG00000020195)	slc8a2a (ENSSDUG00000020230)	ENSSDUG00000020256	nccrp1 (ENSSDUG00000020262)	ckma (ENSSDUG00000020286) ##22	MARK4 (ENSSDUG00000020304)	ENSSDUG00000020373 ##27	ppp1r14aa (ENSSDUG00000020380)	dlb (ENSSDUG00000020393)	zgc:153990 (ENSSDUG00000020418)	capns1b (ENSSDUG00000020449)	nova1 (ENSSDUG00000020704)	kptn (ENSSDUG00000020717)	crx (ENSSDUG00000020738)	ENSSDUG00000020749	ARHGAP32 (ENSSDUG00000020769)	vps26bl (ENSSDUG00000020846)	jam3b (ENSSDUG00000020863)	IGSF9B (ENSSDUG00000020875)	cfap58 (ENSSDUG00000020935)
Yellowtail amberjack	MODERN SPECIES	2969	ENSSLDG00000005729	acer3 (ENSSLDG00000005752)	serpinh1a (ENSSLDG00000005778)	GDPD5 (ENSSLDG00000005887)	samsn1b (ENSSLDG00000005945)	ENSSLDG00000005984	usp25 (ENSSLDG00000006019)	WSCD1 (ENSSLDG00000006142)	bhlha9 (ENSSLDG00000006158)	ENSSLDG00000006178	micu2 (ENSSLDG00000006198)	irf2bp1 (ENSSLDG00000006215)	hnrnpl (ENSSLDG00000006243)	slc8a2a (ENSSLDG00000006321)	nccrp1 (ENSSLDG00000006363)	ckma (ENSSLDG00000006400) ##22	MARK4 (ENSSLDG00000006466)	ENSSLDG00000006576 ##27	ppp1r14aa (ENSSLDG00000006603)	dlb (ENSSLDG00000006620)	zgc:153990 (ENSSLDG00000006655)	capns1b (ENSSLDG00000006668)	nova1 (ENSSLDG00000006713)	kptn (ENSSLDG00000006751)	crx (ENSSLDG00000006771)	ENSSLDG00000006786	ARHGAP32 (ENSSLDG00000006831)	vps26bl (ENSSLDG00000006920)	jam3b (ENSSLDG00000006956)
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000021181	ENSMAMG00000026214	ENSMAMG00000021196	ENSMAMG00000021199 ##30	ENSMAMG00000027997	ENSMAMG00000021204	ENSMAMG00000021209	ENSMAMG00000021211	ENSMAMG00000021216	ENSMAMG00000021219	ENSMAMG00000021224	ENSMAMG00000021231	hnrnpl (ENSMAMG00000021232)	slc8a2a (ENSMAMG00000021235)	nccrp1 (ENSMAMG00000021240)	ckma (ENSMAMG00000028699) ##22	ENSMAMG00000021246	ENSMAMG00000021253	ENSMAMG00000021259 ##27	ppp1r14aa (ENSMAMG00000021263)	dlb (ENSMAMG00000021264)	zgc:153990 (ENSMAMG00000021269)	capns1a (ENSMAMG00000026815)	nova1 (ENSMAMG00000021272)	ENSMAMG00000021274	ENSMAMG00000021282	ENSMAMG00000012684	VPS26B (ENSMAMG00000000497)	ENSMAMG00000000532	IGSF9B (ENSMAMG00000000543)	ENSMAMG00000000624
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i
Climbing perch	MODERN SPECIES	5	acer3 (ENSATEG00000000727)	serpinh1a (ENSATEG00000000702)	ENSATEG00000000697	samsn1b (ENSATEG00000000688)	ENSATEG00000000676	usp25 (ENSATEG00000000570)	ENSATEG00000000444	bhlha9 (ENSATEG00000026340)	ENSATEG00000000200	ENSATEG00000000150	ENSATEG00000029648	hnrnpl (ENSATEG00000000129)	slc8a2a (ENSATEG00000000055)	nccrp1 (ENSATEG00000017793)	ENSATEG00000017784	ckma (ENSATEG00000017761) ##22	ENSATEG00000017713	ENSATEG00000017678 ##27	ppp1r14aa (ENSATEG00000025902)	dlb (ENSATEG00000017617)	zgc:153990 (ENSATEG00000017609)	capns1a (ENSATEG00000017593)	nova1 (ENSATEG00000025682)	ENSATEG00000017505	ENSATEG00000017467	ENSATEG00000017457	ENSATEG00000017355	VPS26B (ENSATEG00000025542)	ENSATEG00000026696	IGSF9B (ENSATEG00000017250)	ENSATEG00000017054
Siamese fighting fish	MODERN SPECIES	5	ENSBSLG00000016308	acer3 (ENSBSLG00000016310)	serpinh1a (ENSBSLG00000016314)	GDPD5 (ENSBSLG00000016320)	samsn1b (ENSBSLG00000016338)	NRIP1 (ENSBSLG00000016341)	usp25 (ENSBSLG00000016375)	ENSBSLG00000018630	bhlha9 (ENSBSLG00000018632)	ENSBSLG00000018637	micu2 (ENSBSLG00000018675)	irf2bp1 (ENSBSLG00000018678)	hnrnpl (ENSBSLG00000018681)	slc8a2a (ENSBSLG00000018694)	nccrp1 (ENSBSLG00000018701)	ckma (ENSBSLG00000018709) ##22	ENSBSLG00000018729	MARK4 (ENSBSLG00000018869)	EXOC3L2 (ENSBSLG00000019503) ##27	ppp1r14aa (ENSBSLG00000019532)	dlb (ENSBSLG00000019539)	zgc:153990 (ENSBSLG00000019557)	capns1b (ENSBSLG00000019569)	nova1 (ENSBSLG00000019582)	kptn (ENSBSLG00000019606)	crx (ENSBSLG00000019718)	ENSBSLG00000019725	ARHGAP32 (ENSBSLG00000019748)	vps26bl (ENSBSLG00000020325)	jam3b (ENSBSLG00000020340)	IGSF9B (ENSBSLG00000002382)
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b.r.a ##22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003165	ENSTNIG00000003166	ENSTNIG00000019480	MMP11 (ENSTNIG00000007106)	prrc1 (ENSTNIG00000007107)	ENSTNIG00000007108	SLC27A3 (ENSTNIG00000003704)	psmb10 (ENSTNIG00000003705)	selenoh (ENSTNIG00000003706)	YTHDC2 (ENSTNIG00000003707)	ENSTNIG00000003708	ENSTNIG00000003709	dscama (ENSTNIG00000006761)	ENSTNIG00000000980	ENSTNIG00000006760	ckma (ENSTNIG00000006759) ##22	ENSTNIG00000001462	ENSTNIG00000002825	ENSTNIG00000000007	ATP2C1 (ENSTNIG00000005396)	aldh5a1 (ENSTNIG00000005395)	ENSTNIG00000001948	DENND4B (ENSTNIG00000005394)	SLC39A1 (ENSTNIG00000005393)	NPR2 (ENSTNIG00000006188)	dek (ENSTNIG00000001004)	ENSTNIG00000006187	ENSTNIG00000006186	plin6 (ENSTNIG00000006185)	ENSTNIG00000006184	nudt17 (ENSTNIG00000006183)
Fugu	MODERN SPECIES	6	ENSTRUG00000027942	acer3 (ENSTRUG00000022027)	ENSTRUG00000027304	ENSTRUG00000031529	ENSTRUG00000028851	GDPD5 (ENSTRUG00000003607)	ENSTRUG00000027101	usp25 (ENSTRUG00000000019)	slc8a2a (ENSTRUG00000000015)	ENSTRUG00000030190	irf2bp1 (ENSTRUG00000000014)	micu2 (ENSTRUG00000000009)	ENSTRUG00000032510	ENSTRUG00000001066	ENSTRUG00000021532	ckma (ENSTRUG00000001749) ##22	ENSTRUG00000001995	ENSTRUG00000002338	GLB1L2 (ENSTRUG00000002407)	ei24 (ENSTRUG00000004404)	stt3a (ENSTRUG00000004771)	ENSTRUG00000022614	thap12a (ENSTRUG00000005307)	ENSTRUG00000005439	ENSTRUG00000029300	ENSTRUG00000008094	ENSTRUG00000027089	wnt11 (ENSTRUG00000001530)	uvrag (ENSTRUG00000003859)	ENSTRUG00000029802	ENSTRUG00000022613
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Ballan wrasse	MODERN SPECIES	24														slc8a2a (ENSLBEG00000028508)	nccrp1 (ENSLBEG00000028514)	ckma (ENSLBEG00000028518) ##22	MARK4 (ENSLBEG00000028528)	ENSLBEG00000028535 ##27	ppp1r14aa (ENSLBEG00000028536)	dlb (ENSLBEG00000028537)	zgc:153990 (ENSLBEG00000028539)	capns1b (ENSLBEG00000028540)	nova1 (ENSLBEG00000028542)	kptn (ENSLBEG00000028544)	crx (ENSLBEG00000028547)	ENSLBEG00000028548	ENSLBEG00000028549	ARHGAP32 (ENSLBEG00000028551)	vps26bl (ENSLBEG00000028557)	jam3b (ENSLBEG00000028559)	IGSF9B (ENSLBEG00000028562)
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Perciformes	ANCESTRAL SPECIES	25	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00390000000083.b	ENSGT00940000159985	ENSGT00390000002960.d	ENSGT00390000015123	ENSGT00390000009588	ENSGT00390000006659	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Perciformes_a	ANCESTRAL SPECIES	26	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00390000000083.b	ENSGT00940000159985	ENSGT00390000002960.d	ENSGT01030000235478	ENSGT00390000009588	ENSGT00390000006659	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Channel bull blenny	MODERN SPECIES	5	usp25 (ENSCGOG00000023861)	WSCD1 (ENSCGOG00000023825)	bhlha9 (ENSCGOG00000023823)	riox2 (ENSCGOG00000023818)	ENSCGOG00000023815	HLCS (ENSCGOG00000023812)	ENSCGOG00000023805	ska2 (ENSCGOG00000023803)	tiprl (ENSCGOG00000023800)	ENSCGOG00000023790	micu2 (ENSCGOG00000023783)	irf2bp1 (ENSCGOG00000023781)	hnrnpl (ENSCGOG00000023768)	slc8a2a (ENSCGOG00000023761)	nccrp1 (ENSCGOG00000023753)	ckma (ENSCGOG00000023727) ##22	MARK4 (ENSCGOG00000023623)	ENSCGOG00000023592 ##27	ppp1r14aa (ENSCGOG00000023589)	dlb (ENSCGOG00000023588)	zgc:153990 (ENSCGOG00000023587)	capns1b (ENSCGOG00000023564)	nova1 (ENSCGOG00000023557)	kptn (ENSCGOG00000023528)	crx (ENSCGOG00000023527)	h3f3c (ENSCGOG00000023506)	ARHGAP32 (ENSCGOG00000023196)	vps26bl (ENSCGOG00000023160)	jam3b (ENSCGOG00000023149)	IGSF9B (ENSCGOG00000023146)	ENSCGOG00000023142
Pike perch	MODERN SPECIES	25	WSCD1 (ENSSLUG00000011446)	bhlha9 (ENSSLUG00000011439)	riox2 (ENSSLUG00000011429)	ENSSLUG00000011414	HLCS (ENSSLUG00000011406)	ENSSLUG00000011394	ska2 (ENSSLUG00000011389)	tiprl (ENSSLUG00000011384)	ENSSLUG00000011373	micu2 (ENSSLUG00000011366)	irf2bp1 (ENSSLUG00000011361)	hnrnpl (ENSSLUG00000011278)	slc8a2a (ENSSLUG00000011208)	nccrp1 (ENSSLUG00000011197)	ENSSLUG00000011192	ckma (ENSSLUG00000011167) ##22	MARK4 (ENSSLUG00000010828)	ENSSLUG00000010790 ##27	ppp1r14aa (ENSSLUG00000010783)	dlb (ENSSLUG00000010711)	zgc:153990 (ENSSLUG00000010699)	capns1b (ENSSLUG00000010645)	nova1 (ENSSLUG00000010622)	kptn (ENSSLUG00000010558)	crx (ENSSLUG00000010543)	ENSSLUG00000010540	vps26bl (ENSSLUG00000010523)	jam3b (ENSSLUG00000010511)	IGSF9B (ENSSLUG00000010484)	cfap58 (ENSSLUG00000010462)	fez1 (ENSSLUG00000010446)
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00390000000083.b	ENSGT00940000159985	ENSGT00390000002960.d	ENSGT01030000235478	ENSGT00390000009588	ENSGT00390000006659	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.a.eb	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT01030000234626.E
Lumpfish	MODERN SPECIES	5	smfn (ENSCLMG00005004846)	AMOT (ENSCLMG00005004840)	ENSCLMG00005004784	ENSCLMG00005004755	ENSCLMG00005004684	ENSCLMG00005004661	ENSCLMG00005004653	ska2 (ENSCLMG00005004637)	tiprl (ENSCLMG00005004618)	ENSCLMG00005004552	micu2 (ENSCLMG00005004524)	irf2bp1 (ENSCLMG00005004511)	hnrnpl (ENSCLMG00005004128)	slc8a2a (ENSCLMG00005003969)	nccrp1 (ENSCLMG00005003964)	ckma (ENSCLMG00005003944) ##22	MARK4 (ENSCLMG00005003941)	MX1 (ENSCLMG00005003939)	ENSCLMG00005003937 ##27	ppp1r14aa (ENSCLMG00005003935)	dlb (ENSCLMG00005003913)	zgc:153990 (ENSCLMG00005003910)	capns1b (ENSCLMG00005003909)	nova1 (ENSCLMG00005003905)	kptn (ENSCLMG00005003862)	crx (ENSCLMG00005003857)	ENSCLMG00005003854	ARHGAP32 (ENSCLMG00005002088)	VPS26B (ENSCLMG00005002038)	jam3b (ENSCLMG00005001995)	IGSF9B (ENSCLMG00005001992)
Stickleback	MODERN SPECIES	7	serpinh1a (ENSGACG00000020152)	GDPD5 (ENSGACG00000020153)	NRIP1 (ENSGACG00000020154)	usp25 (ENSGACG00000020155)	WSCD1 (ENSGACG00000020156)	ENSGACG00000020158	HLCS (ENSGACG00000020159)	ska2 (ENSGACG00000020160)	tiprl (ENSGACG00000020161)	ENSGACG00000020162	micu2 (ENSGACG00000020163)	irf2bp1 (ENSGACG00000020164)	hnrnpl (ENSGACG00000020165)	slc8a2a (ENSGACG00000020166)	nccrp1 (ENSGACG00000020167)	ckma (ENSGACG00000020168) ##22	MARK4 (ENSGACG00000020169)	ENSGACG00000020170 ##27	ppp1r14aa (ENSGACG00000020171)	dlb (ENSGACG00000020172)	zgc:153990 (ENSGACG00000020173)	capns1a (ENSGACG00000020174)	nova1 (ENSGACG00000020175)	kptn (ENSGACG00000020176)	ENSGACG00000020177	crx (ENSGACG00000020178)	ENSGACG00000020179	ARHGAP32 (ENSGACG00000020180)	ENSGACG00000020181	vps26bl (ENSGACG00000020182)	jam3b (ENSGACG00000020183)
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Gilthead seabream	MODERN SPECIES	4	acer3 (ENSSAUG00010014699)	serpinh1a (ENSSAUG00010014702)	GDPD5 (ENSSAUG00010014706)	ENSSAUG00010014712	ENSSAUG00010014715	usp25 (ENSSAUG00010014776)	WSCD1 (ENSSAUG00010017144)	bhlha9 (ENSSAUG00010017148)	ENSSAUG00010017151	micu2 (ENSSAUG00010017159)	irf2bp1 (ENSSAUG00010017164)	hnrnpl (ENSSAUG00010017179)	slc8a2a (ENSSAUG00010017299)	nccrp1 (ENSSAUG00010017301)	crx (ENSSAUG00010017303)	ckma (ENSSAUG00010017305) ##22	MARK4 (ENSSAUG00010017309)	ENSSAUG00010017382 ##27	ppp1r14aa (ENSSAUG00010017384)	dlb (ENSSAUG00010017385)	zgc:153990 (ENSSAUG00010017387)	capns1b (ENSSAUG00010017388)	nova1 (ENSSAUG00010017389)	kptn (ENSSAUG00010001463)	ENSSAUG00010001743	ARHGAP32 (ENSSAUG00010001872)	vps26bl (ENSSAUG00010003823)	IGSF9B (ENSSAUG00010003844)	cfap58 (ENSSAUG00010003923)	fez1 (ENSSAUG00010003936)	esama (ENSSAUG00010003944)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Large yellow croaker	MODERN SPECIES	493	ENSLCRG00005006278	acer3 (ENSLCRG00005006276)	serpinh1a (ENSLCRG00005006275)	GDPD5 (ENSLCRG00005006267)	samsn1b (ENSLCRG00005006263)	ENSLCRG00005006262	usp25 (ENSLCRG00005003391)	WSCD1 (ENSLCRG00005003321)	bhlha9 (ENSLCRG00005003319)	ENSLCRG00005003312	micu2 (ENSLCRG00005003306)	irf2bp1 (ENSLCRG00005003304)	hnrnpl (ENSLCRG00005003189)	slc8a2a (ENSLCRG00005003165)	nccrp1 (ENSLCRG00005003153)	ckma (ENSLCRG00005003148) ##22	ENSLCRG00005001422	ENSLCRG00005001403 ##27	ppp1r14aa (ENSLCRG00005001397)	dlb (ENSLCRG00005022699)	zgc:153990 (ENSLCRG00005022698)	capns1b (ENSLCRG00005022696)	nova1 (ENSLCRG00005022694)	kptn (ENSLCRG00005022678)	crx (ENSLCRG00005022677)	ENSLCRG00005022676	ARHGAP32 (ENSLCRG00005022640)	vps26bl (ENSLCRG00005022631)	jam3b (ENSLCRG00005022629)	IGSF9B (ENSLCRG00005022622)	cfap58 (ENSLCRG00005022621)
European seabass	MODERN SPECIES	4	mmp13a (ENSDLAG00005008130)	ENSDLAG00005008108	serpinh1a (ENSDLAG00005008100)	ENSDLAG00005007979	samsn1b (ENSDLAG00005007939)	ENSDLAG00005007934	usp25 (ENSDLAG00005007491)	ENSDLAG00005007446	bhlha9 (ENSDLAG00005007435)	ENSDLAG00005007297	ENSDLAG00005007277	ENSDLAG00005033665	hnrnpl (ENSDLAG00005007069)	slc8a2a (ENSDLAG00005006825)	nccrp1 (ENSDLAG00005027414)	ckma (ENSDLAG00005006316) ##22	ENSDLAG00005006717	ENSDLAG00005027249	ENSDLAG00005006657 ##27	ppp1r14aa (ENSDLAG00005006624)	dlb (ENSDLAG00005006620)	zgc:153990 (ENSDLAG00005006619)	nova1 (ENSDLAG00005006248)	ENSDLAG00005006029	ENSDLAG00005029980	ENSDLAG00005005990	VPS26B (ENSDLAG00005005937)	ENSDLAG00005028459	ENSDLAG00005005915	IGSF9B (ENSDLAG00005005361)	ENSDLAG00005005165
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Aplocheiloidei	ANCESTRAL SPECIES	182																ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a.hb.b	ENSGT00940000156937.a.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a
Mangrove rivulus	MODERN SPECIES	495															ENSKMAG00000008561	ckma (ENSKMAG00000008581) ##22	MARK4 (ENSKMAG00000008613)
Turquoise killifish	MODERN SPECIES	1620	ENSNFUG00015008658	GDPD5 (ENSNFUG00015008663)	WSCD1 (ENSNFUG00015008667)	ENSNFUG00015008671	usp25 (ENSNFUG00015008710)	ENSNFUG00015009276	ENSNFUG00015009281	NCCRP1 (ENSNFUG00015009292)	slc8a2a (ENSNFUG00015009315)	Nfu_g_1_017124 (ENSNFUG00015009426)	Nfu_g_1_017135 (ENSNFUG00015009563)	EFHA1 (ENSNFUG00015009569)	ENSNFUG00015009584	bhlha9 (ENSNFUG00015009595)	zgc:153990 (ENSNFUG00015009613)	ckma (ENSNFUG00015009641) ##22	MARK4 (ENSNFUG00015010697)	PPP1R14AA (ENSNFUG00015010762)	dlb (ENSNFUG00015010772)	CAPNS1A (ENSNFUG00015010782)	nova1 (ENSNFUG00015010809)	kptn (ENSNFUG00015010864)	crx (ENSNFUG00015010903)	ENSNFUG00015010917	ARHGAP32 (ENSNFUG00015011007)	ENSNFUG00015012220	jam3b (ENSNFUG00015012223)	IGSF9B (ENSNFUG00015012255)	smfn (ENSNFUG00015012356)	AMOT (ENSNFUG00015013083)	ENSNFUG00015013094
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
NAME_4	ANCESTRAL SPECIES	148				ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b.f	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Mummichog	MODERN SPECIES	2248		GDPD5 (ENSFHEG00000005231)	samsn1b (ENSFHEG00000005210)	ENSFHEG00000005132	usp25 (ENSFHEG00000005107)	ENSFHEG00000004945	ENSFHEG00000004935	bhlha9 (ENSFHEG00000004931)	ENSFHEG00000004918	micu2 (ENSFHEG00000004892)	irf2bp1 (ENSFHEG00000004882)	irf2bp1 (ENSFHEG00000004879)	hnrnpl (ENSFHEG00000004874)	slc8a2a (ENSFHEG00000004856)	nccrp1 (ENSFHEG00000004820)	ckma (ENSFHEG00000004795) ##22	ENSFHEG00000004760	ENSFHEG00000004721 ##27	ENSFHEG00000000723	dlb (ENSFHEG00000004692)	zgc:153990 (ENSFHEG00000004655)	capns1b (ENSFHEG00000004645)	nova1 (ENSFHEG00000004626)	kptn (ENSFHEG00000004605)	crx (ENSFHEG00000004555)	ENSFHEG00000004538	ARHGAP32 (ENSFHEG00000000117)	vps26bl (ENSFHEG00000004492)	jam3b (ENSFHEG00000000616)	IGSF9B (ENSFHEG00000004461)	cfap58 (ENSFHEG00000004411)
Sheepshead minnow	MODERN SPECIES	485					ENSCVAG00000007073	ENSCVAG00000007051	ENSCVAG00000007039	mstna (ENSCVAG00000007019)	stat1a (ENSCVAG00000006312)	glsa (ENSCVAG00000006160)	nab1a (ENSCVAG00000006121)	mfsd6a (ENSCVAG00000006105)	ENSCVAG00000006079	ahr1b (ENSCVAG00000006075)	ENSCVAG00000006056	ckma (ENSCVAG00000006048) ##22	ENSCVAG00000006029	MARK4 (ENSCVAG00000006024)	ENSCVAG00000005989 ##27	ppp1r14aa (ENSCVAG00000005978)	dlb (ENSCVAG00000000172)	zgc:153990 (ENSCVAG00000005929)	capns1a (ENSCVAG00000005926)
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000159193	ENSGT00940000155457.a.a.d	ENSGT00390000013593	ENSGT00940000157231.a.a	ENSGT00390000017627.b	ENSGT00530000063534.b	ENSGT00940000155900.i	ENSGT00940000156937.a.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962
NAME_6	ANCESTRAL SPECIES	101	ENSGT00940000158793	ENSGT00390000016247	ENSGT00940000159193	ENSGT00940000155457.a.a.d	ENSGT00390000013593	ENSGT00940000157231.a.a	ENSGT00390000017627.b	ENSGT00530000063534.b	ENSGT00940000155900.i	ENSGT00940000156937.a.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00940000164977.a	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000162120.f.a	ENSGT00950000183079.A.b.c.b	ENSGT00940000156343.lb.b	ENSGT00390000002453.b	ENSGT00940000158096.f	ENSGT00940000157962
Sailfin molly	MODERN SPECIES	277											ARHGAP32 (ENSPLAG00000015060)	ENSPLAG00000015073	crx (ENSPLAG00000015131)	slc8a2a (ENSPLAG00000015157)	nccrp1 (ENSPLAG00000015175)	ckma (ENSPLAG00000015197) ##22	MARK4 (ENSPLAG00000015238)	ENSPLAG00000015256 ##27	ppp1r14aa (ENSPLAG00000015261)	dlb (ENSPLAG00000015280)	zgc:153990 (ENSPLAG00000015288)	capns1b (ENSPLAG00000015296)	nova1 (ENSPLAG00000015391)	kptn (ENSPLAG00000015407)	hnrnpl (ENSPLAG00000015433)	irf2bp1 (ENSPLAG00000015439)	micu2 (ENSPLAG00000015446)	ENSPLAG00000015460	bhlha9 (ENSPLAG00000015472)
Amazon molly	MODERN SPECIES	330	tmem218 (ENSPFOG00000018589)	ENSPFOG00000018579	robo3 (ENSPFOG00000018507)	MSANTD2 (ENSPFOG00000022034)	esama (ENSPFOG00000018461)	fez1 (ENSPFOG00000018445)	cfap58 (ENSPFOG00000018403)	IGSF9B (ENSPFOG00000018354)	jam3b (ENSPFOG00000018337)	vps26bl (ENSPFOG00000018330)	ARHGAP32 (ENSPFOG00000018284)	ENSPFOG00000018274	crx (ENSPFOG00000018273)	slc8a2a (ENSPFOG00000018239)	nccrp1 (ENSPFOG00000018217)	ckma (ENSPFOG00000018207) ##22	MARK4 (ENSPFOG00000018109)	ENSPFOG00000018071 ##27	ppp1r14aa (ENSPFOG00000018063)	dlb (ENSPFOG00000018044)	zgc:153990 (ENSPFOG00000018038)	capns1b (ENSPFOG00000018021)	nova1 (ENSPFOG00000018009)	kptn (ENSPFOG00000017987)	hnrnpl (ENSPFOG00000017949)	irf2bp1 (ENSPFOG00000020807)	micu2 (ENSPFOG00000017927)	ENSPFOG00000017901	bhlha9 (ENSPFOG00000017896)	WSCD1 (ENSPFOG00000017879)	usp25 (ENSPFOG00000017727)
Guppy	MODERN SPECIES	444	ENSPREG00000010509	ENSPREG00000010537	acer3 (ENSPREG00000010558)	serpinh1a (ENSPREG00000010587)	GDPD5 (ENSPREG00000010612)	samsn1b (ENSPREG00000010675)	ENSPREG00000010684	usp25 (ENSPREG00000010697)	WSCD1 (ENSPREG00000010731)	vps26bl (ENSPREG00000010746)	ARHGAP32 (ENSPREG00000010772)	ENSPREG00000010865	crx (ENSPREG00000010876)	slc8a2a (ENSPREG00000010899)	nccrp1 (ENSPREG00000010962)	ckma (ENSPREG00000011025) ##22	MARK4 (ENSPREG00000011134)	ENSPREG00000011202 ##27	ppp1r14aa (ENSPREG00000011215)	dlb (ENSPREG00000011227)	zgc:153990 (ENSPREG00000011254)	capns1b (ENSPREG00000011293)	nova1 (ENSPREG00000011614)	kptn (ENSPREG00000011640)	hnrnpl (ENSPREG00000011662)	irf2bp1 (ENSPREG00000011689)	micu2 (ENSPREG00000011698)	ENSPREG00000011736	bhlha9 (ENSPREG00000011763)	ENSPREG00000011772	slc8a4a (ENSPREG00000011792)
Platyfish	MODERN SPECIES	2	acer3 (ENSXMAG00000014002)	serpinh1a (ENSXMAG00000014013)	GDPD5 (ENSXMAG00000014022)	ENSXMAG00000029062	ENSXMAG00000028626	usp25 (ENSXMAG00000014035)	WSCD1 (ENSXMAG00000014061)	bhlha9 (ENSXMAG00000026692)	ENSXMAG00000018695	ENSXMAG00000024550	micu2 (ENSXMAG00000018701)	irf2bp1 (ENSXMAG00000019430)	hnrnpl (ENSXMAG00000019070)	slc8a2a (ENSXMAG00000017941)	nccrp1 (ENSXMAG00000017936)	ckma (ENSXMAG00000017927) ##22	MARK4 (ENSXMAG00000017913)	ENSXMAG00000017905 ##27	ppp1r14aa (ENSXMAG00000017904)	dlb (ENSXMAG00000017891)	zgc:153990 (ENSXMAG00000023349)	capns1b (ENSXMAG00000017885)	nova1 (ENSXMAG00000017880)	kptn (ENSXMAG00000017878)	ENSXMAG00000023201	stoml3b (ENSXMAG00000017867)	ENSXMAG00000017861	vps36 (ENSXMAG00000025016)	ENSXMAG00000017831	fgl1b (ENSXMAG00000017825)	tpte (ENSXMAG00000017783)
Oryzias	ANCESTRAL SPECIES	31	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263514.A.f.x.b.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT00940000154678.a.b	ENSGT00940000159690.b	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a
Oryzias_b	ANCESTRAL SPECIES	62	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.b	ENSGT01100000263514.A.f.x.b.a.b	ENSGT00950000183089.c.a.k.b.b.i	ENSGT00940000154678.a.b	ENSGT00940000159690.b	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT01070000253869	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.a	ENSGT00940000154313.c.a
Javanese ricefish	MODERN SPECIES	5	ENSOJAG00000008711	ins (ENSOJAG00000008767)	ENSOJAG00000008915	ENSOJAG00000008952	ENSOJAG00000008972	GALNT10 (ENSOJAG00000009039)	ENSOJAG00000009484	bhlha9 (ENSOJAG00000009523)	ENSOJAG00000009547	micu2 (ENSOJAG00000009563)	irf2bp1 (ENSOJAG00000009571)	hnrnpl (ENSOJAG00000009629)	slc8a2a (ENSOJAG00000010019)	nccrp1 (ENSOJAG00000010104)	ENSOJAG00000010110	ckma (ENSOJAG00000010121) ##22	ENSOJAG00000010224	MARK4 (ENSOJAG00000010267)	ENSOJAG00000010571 ##27	ppp1r14aa (ENSOJAG00000010676)	dlb (ENSOJAG00000010685)	zgc:153990 (ENSOJAG00000010696)	capns1b (ENSOJAG00000010708)	nova1 (ENSOJAG00000010732)	kptn (ENSOJAG00000010789)	crx (ENSOJAG00000010856)	ENSOJAG00000010869	ARHGAP32 (ENSOJAG00000010905)	ENSOJAG00000011360	IGSF9B (ENSOJAG00000011428)	jam3b (ENSOJAG00000011598)
Indian medaka	MODERN SPECIES	39	ENSOMEG00000016656	ENSOMEG00000016594	ENSOMEG00000016588	dscama (ENSOMEG00000016538)	ENSOMEG00000000408	ENSOMEG00000016284	usp25 (ENSOMEG00000016235)	WSCD1 (ENSOMEG00000016108)	bhlha9 (ENSOMEG00000016093)	ENSOMEG00000016078	micu2 (ENSOMEG00000016017)	irf2bp1 (ENSOMEG00000015992)	hnrnpl (ENSOMEG00000015965)	slc8a2a (ENSOMEG00000015888)	nccrp1 (ENSOMEG00000015782)	ckma (ENSOMEG00000015762) ##22	ENSOMEG00000015743	MARK4 (ENSOMEG00000015709)	ENSOMEG00000015621 ##27	ppp1r14aa (ENSOMEG00000015592)	dlb (ENSOMEG00000015582)	zgc:153990 (ENSOMEG00000015554)	capns1b (ENSOMEG00000015522)	nova1 (ENSOMEG00000015479)	kptn (ENSOMEG00000015452)	ENSOMEG00000015430
Oryzias_a	ANCESTRAL SPECIES	70	ENSGT01060000248528.b	ENSGT01020000230360.c.b.a.a.a.a.a.d	ENSGT00950000183089.c.a.k.b.b.i	ENSGT00940000154678.a.b	ENSGT00940000159690.b	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.b.a.b	ENSGT01100000263504.a.b.a.a.ib	ENSGT00940000154313.c.a	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b	ENSGT00390000017627.b
Japanese Medaka HdrR	MODERN SPECIES	5	ENSORLG00000000693	ENSORLG00000000680	dscama (ENSORLG00000000669)	ENSORLG00000000623	ENSORLG00000000586	usp25 (ENSORLG00000000577)	ENSORLG00000025694	WSCD1 (ENSORLG00000000526)	bhlha9 (ENSORLG00000022043)	ENSORLG00000000510	micu2 (ENSORLG00000028459)	irf2bp1 (ENSORLG00000030526)	hnrnpl (ENSORLG00000000486)	slc8a2a (ENSORLG00000000474)	nccrp1 (ENSORLG00000000459)	ckma (ENSORLG00000000449) ##22	MARK4 (ENSORLG00000000445)	ENSORLG00000025181 ##27	ENSORLG00000023651	ppp1r14aa (ENSORLG00000000395)	ENSORLG00000000382	dlb (ENSORLG00000000378)	zgc:153990 (ENSORLG00000023232)	capns1b (ENSORLG00000000369)	nova1 (ENSORLG00000000350)	kptn (ENSORLG00000000337)	ENSORLG00000000324	h3f3c (ENSORLG00000026243)	ENSORLG00000028706	ARHGAP32 (ENSORLG00000000312)	jam3b (ENSORLG00000027029)
Chinese medaka	MODERN SPECIES	604													nccrp1 (ENSOSIG00000011379)	zgc:171566 (ENSOSIG00000011378)	ENSOSIG00000011377	ckma (ENSOSIG00000011370) ##22	MARK4 (ENSOSIG00000011351)	ENSOSIG00000011345 ##27
Ovalentaria_B	ANCESTRAL SPECIES	26	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Pseudocrenilabrinae	ANCESTRAL SPECIES	29	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	39	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Haplochromini	ANCESTRAL SPECIES	36	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a.n.b	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00940000177515
Burton s mouthbrooder	MODERN SPECIES	464	ENSHBUG00000007463	acer3 (ENSHBUG00000006751)	serpinh1a (ENSHBUG00000006698)	GDPD5 (ENSHBUG00000006664)	samsn1b (ENSHBUG00000006652)	ENSHBUG00000006631	usp25 (ENSHBUG00000006607)	WSCD1 (ENSHBUG00000006371)	bhlha9 (ENSHBUG00000006360)	ENSHBUG00000006350	micu2 (ENSHBUG00000006336)	irf2bp1 (ENSHBUG00000006281)	hnrnpl (ENSHBUG00000006269)	slc8a2a (ENSHBUG00000006215)	nccrp1 (ENSHBUG00000006154)	ckma (ENSHBUG00000006144) ##22	ENSHBUG00000006120	MARK4 (ENSHBUG00000006094)	ENSHBUG00000005970 ##27	ppp1r14aa (ENSHBUG00000005946)	dlb (ENSHBUG00000005938)	zgc:153990 (ENSHBUG00000005892)	capns1b (ENSHBUG00000005884)
Haplochromini_A	ANCESTRAL SPECIES	41	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00980000198690.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000154313.c.a.n.a	ENSGT00940000154313.c.a.n.b	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i
P. nyererei	MODERN SPECIES	392	acer3 (ENSPNYG00000016176)	serpinh1a (ENSPNYG00000016156)	GDPD5 (ENSPNYG00000016092)	samsn1b (ENSPNYG00000016067)	ENSPNYG00000016061	usp25 (ENSPNYG00000015949)	WSCD1 (ENSPNYG00000015892)	bhlha9 (ENSPNYG00000015882)	ENSPNYG00000015839	micu2 (ENSPNYG00000015822)	irf2bp1 (ENSPNYG00000015815)	hnrnpl (ENSPNYG00000015767)	slc8a2a (ENSPNYG00000015720)	nccrp1 (ENSPNYG00000015694)	ENSPNYG00000015687	ckma (ENSPNYG00000015663) ##22	MARK4 (ENSPNYG00000015630)	ENSPNYG00000015613 ##27	ppp1r14aa (ENSPNYG00000015601)	dlb (ENSPNYG00000015585)	zgc:153990 (ENSPNYG00000015565)	capns1b (ENSPNYG00000015538)	nova1 (ENSPNYG00000015521)	kptn (ENSPNYG00000015503)	crx (ENSPNYG00000015489)	ENSPNYG00000015474	ARHGAP32 (ENSPNYG00000015329)	vps26bl (ENSPNYG00000015268)	jam3b (ENSPNYG00000015243)	ENSPNYG00000015206	IGSF9B (ENSPNYG00000015152)
Haplochromini_B	ANCESTRAL SPECIES	46	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00980000198690.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT01100000264924	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.a.a	ENSGT00940000154313.c.a.n.a	ENSGT01100000263504.a.b.a.b.a.b	ENSGT00940000154313.c.a.n.b	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a
Eastern happy	MODERN SPECIES	1	h2ax1 (ENSACLG00000004315)	ENSACLG00000004304	ENSACLG00000004293	HSPA8 (ENSACLG00000004224)	bsx (ENSACLG00000004204)	ENSACLG00000004185	ENSACLG00000003773	ENSACLG00000003757	ENSACLG00000003723	micu2 (ENSACLG00000003711)	irf2bp1 (ENSACLG00000003704)	hnrnpl (ENSACLG00000003627)	slc8a2a (ENSACLG00000003573)	nccrp1 (ENSACLG00000003541)	ENSACLG00000003530	ckma (ENSACLG00000003506) ##22	MARK4 (ENSACLG00000003377)	ENSACLG00000003357 ##27	ppp1r14aa (ENSACLG00000003348)	dlb (ENSACLG00000003314)	zgc:153990 (ENSACLG00000003052)	capns1b (ENSACLG00000003030)	nova1 (ENSACLG00000003002)	kptn (ENSACLG00000002914)	ENSACLG00000002904	crx (ENSACLG00000002886)	h3f3c (ENSACLG00000002870)	ENSACLG00000002860	ENSACLG00000002837	ENSACLG00000002816	ENSACLG00000002796
Zebra mbuna	MODERN SPECIES	1092	acer3 (ENSMZEG00005023430)	serpinh1a (ENSMZEG00005023428)	GDPD5 (ENSMZEG00005023426)	samsn1b (ENSMZEG00005023423)	ENSMZEG00005023421	usp25 (ENSMZEG00005023407)	WSCD1 (ENSMZEG00005023401)	bhlha9 (ENSMZEG00005023399)	ENSMZEG00005023396	micu2 (ENSMZEG00005023395)	irf2bp1 (ENSMZEG00005023394)	hnrnpl (ENSMZEG00005023388)	slc8a2a (ENSMZEG00005023386)	nccrp1 (ENSMZEG00005023383)	ENSMZEG00005023381	ckma (ENSMZEG00005023380) ##22	MARK4 (ENSMZEG00005023376)	ENSMZEG00005023372 ##27	ppp1r14aa (ENSMZEG00005023370)	dlb (ENSMZEG00005023369)	zgc:153990 (ENSMZEG00005023367)	capns1b (ENSMZEG00005023364)	nova1 (ENSMZEG00005023362)	kptn (ENSMZEG00005023357)	crx (ENSMZEG00005023354)	ENSMZEG00005023353	ints2 (ENSMZEG00005023345)	med13a (ENSMZEG00005023335)	rnft1 (ENSMZEG00005023331)	ENSMZEG00005023330	VMP1 (ENSMZEG00005023328)
Lyretail cichlid	MODERN SPECIES	526																ckma (ENSNBRG00000007831) ##22	MARK4 (ENSNBRG00000007855)	ENSNBRG00000007912 ##27	ppp1r14aa (ENSNBRG00000007959)	dlb (ENSNBRG00000007979)	zgc:153990 (ENSNBRG00000008000)	capns1b (ENSNBRG00000008033)	nova1 (ENSNBRG00000008100)	kptn (ENSNBRG00000008127)	crx (ENSNBRG00000008158)	ENSNBRG00000008170	ENSNBRG00000008189	ENSNBRG00000008204	VPS26B (ENSNBRG00000008218)	jam3b (ENSNBRG00000008240)
Nile tilapia	MODERN SPECIES	1	acer3 (ENSONIG00000037831)	serpinh1a (ENSONIG00000015878)	GDPD5 (ENSONIG00000015867)	ENSONIG00000015874	ENSONIG00000040889	usp25 (ENSONIG00000015857)	WSCD1 (ENSONIG00000015855)	ENSONIG00000038513	bhlha9 (ENSONIG00000032821)	ENSONIG00000029441	micu2 (ENSONIG00000015851)	irf2bp1 (ENSONIG00000020656)	hnrnpl (ENSONIG00000015848)	slc8a2a (ENSONIG00000015841)	nccrp1 (ENSONIG00000039616)	ckma (ENSONIG00000015836) ##22	MARK4 (ENSONIG00000015826)	ENSONIG00000029399	ENSONIG00000015824 ##27	ppp1r14aa (ENSONIG00000015821)	dlb (ENSONIG00000015819)	zgc:153990 (ENSONIG00000015818)	capns1b (ENSONIG00000027340)	ENSONIG00000029570	nova1 (ENSONIG00000015810)	kptn (ENSONIG00000015807)	crx (ENSONIG00000015806)	ENSONIG00000037977	ARHGAP32 (ENSONIG00000015803)	vps26bl (ENSONIG00000030388)	jam3b (ENSONIG00000015796)
Midas cichlid	MODERN SPECIES	155												akt2l (ENSACIG00000018062)	ENSACIG00000018047	slc8a2a (ENSACIG00000018016)	nccrp1 (ENSACIG00000017989)	ckma (ENSACIG00000017971) ##22	MARK4 (ENSACIG00000017934)	ENSACIG00000017915 ##27	ppp1r14aa (ENSACIG00000017904)	dlb (ENSACIG00000017888)	zgc:153990 (ENSACIG00000017880)	capns1b (ENSACIG00000017831)	nova1 (ENSACIG00000017818)	kptn (ENSACIG00000017806)	crx (ENSACIG00000017800)	ENSACIG00000017795	ARHGAP32 (ENSACIG00000017763)	vps26bl (ENSACIG00000017742)	jam3b (ENSACIG00000017694)	IGSF9B (ENSACIG00000017662)	ENSACIG00000017650
Pomacentridae	ANCESTRAL SPECIES	42	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155900.i	ENSGT00530000063534.b
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00940000154907.a.b	ENSGT00730000110920.a	ENSGT00940000156163.i.b	ENSGT00940000159690.b	ENSGT00940000157806.f	ENSGT00390000007999	ENSGT00940000157962	ENSGT00940000158096.f	ENSGT00390000002453.b	ENSGT00940000156343.lb.b	ENSGT00950000183079.A.b.c.b	ENSGT00940000162120.f.a	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00950000182772.A.a.a.b.r.a ##22	ENSGT00940000159555.v.b	ENSGT01030000234613.b.b.h ##27	ENSGT00950000182985.a.b.a	ENSGT00940000164418.a.b	ENSGT00450000040324.a.a.a	ENSGT00940000155478.hb.b	ENSGT00940000155573.g.b	ENSGT00390000002548	ENSGT00940000164977.a	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000154313.c.a	ENSGT00950000183064.a.b.a.b	ENSGT00940000156937.a.a	ENSGT00940000155191.a.a.c.b	ENSGT00940000155900.i
Clown anemonefish	MODERN SPECIES	3480															nccrp1 (ENSAOCG00000012106)	ckma (ENSAOCG00000002146) ##22	MARK4 (ENSAOCG00000012183)	ENSAOCG00000012222 ##27	ppp1r14aa (ENSAOCG00000012237)	dlb (ENSAOCG00000012257)	zgc:153990 (ENSAOCG00000012281)	GRIN2C (ENSAOCG00000012339)	RBFOX3 (ENSAOCG00000012358)	ENPP7 (ENSAOCG00000012377)	cbx2 (ENSAOCG00000012388)	nog1 (ENSAOCG00000012409)	pctp (ENSAOCG00000012446)	TMEM100 (ENSAOCG00000000766)	MMD (ENSAOCG00000012486)
Orange clownfish	MODERN SPECIES	6	ENSAPEG00000011554	acer3 (ENSAPEG00000011767)	serpinh1a (ENSAPEG00000011784)	GDPD5 (ENSAPEG00000011819)	samsn1b (ENSAPEG00000011851)	ENSAPEG00000011870	usp25 (ENSAPEG00000011877)	WSCD1 (ENSAPEG00000012009)	bhlha9 (ENSAPEG00000012026)	ENSAPEG00000012046	micu2 (ENSAPEG00000012118)	irf2bp1 (ENSAPEG00000012133)	hnrnpl (ENSAPEG00000012139)	slc8a2a (ENSAPEG00000012198)	nccrp1 (ENSAPEG00000012256)	ckma (ENSAPEG00000012285) ##22	MARK4 (ENSAPEG00000012325)	ENSAPEG00000012388 ##27	ppp1r14aa (ENSAPEG00000012424)	dlb (ENSAPEG00000012433)	zgc:153990 (ENSAPEG00000012465)	capns1b (ENSAPEG00000012476)	nova1 (ENSAPEG00000012502)	kptn (ENSAPEG00000012526)	crx (ENSAPEG00000012552)	ENSAPEG00000012567	ARHGAP32 (ENSAPEG00000012706)	vps26bl (ENSAPEG00000012970)	jam3b (ENSAPEG00000012994)	ENSAPEG00000013019	ENSAPEG00000013110
Spiny chromis	MODERN SPECIES	587												irf2bp1 (ENSAPOG00000002422)	hnrnpl (ENSAPOG00000002415)	slc8a2a (ENSAPOG00000002401)	nccrp1 (ENSAPOG00000002373)	ckma (ENSAPOG00000002355) ##22	MARK4 (ENSAPOG00000002316)	ENSAPOG00000002258 ##27	ppp1r14aa (ENSAPOG00000002244)	dlb (ENSAPOG00000002230)	zgc:153990 (ENSAPOG00000002204)	capns1b (ENSAPOG00000002188)	nova1 (ENSAPOG00000002171)	kptn (ENSAPOG00000000044)	crx (ENSAPOG00000002128)	ENSAPOG00000002114	ARHGAP32 (ENSAPOG00000002093)
Bicolor damselfish	MODERN SPECIES	1438										micu2 (ENSSPAG00000001335)	irf2bp1 (ENSSPAG00000001318)	hnrnpl (ENSSPAG00000001307)	slc8a2a (ENSSPAG00000001261)	nccrp1 (ENSSPAG00000001235)	ENSSPAG00000001221	ckma (ENSSPAG00000001188) ##22	MARK4 (ENSSPAG00000001146)	ENSSPAG00000001138 ##27	ppp1r14aa (ENSSPAG00000001123)	dlb (ENSSPAG00000001095)	zgc:153990 (ENSSPAG00000001083)	capns1b (ENSSPAG00000001073)	nova1 (ENSSPAG00000001033)
Acanthomorphata	ANCESTRAL SPECIES	119	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01100000266284	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00940000161512	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B
Cod	MODERN SPECIES	7	ENSGMOG00000007919	ENSGMOG00000007927	ENSGMOG00000007941	ENSGMOG00000007947	ENSGMOG00000029407	hif1al (ENSGMOG00000003074)	ENSGMOG00000013711	pak4 (ENSGMOG00000006194)	ENSGMOG00000031550	ENSGMOG00000024801	sae1 (ENSGMOG00000001497)	ZC3H4 (ENSGMOG00000031441)	zgc:154093 (ENSGMOG00000023571)	ercc2 (ENSGMOG00000004258)	klc3 (ENSGMOG00000007334)	CKM (ENSGMOG00000009605) ##22	ENSGMOG00000009613	ENSGMOG00000025093	ENSGMOG00000000494	SPTBN4 (ENSGMOG00000019018)	blvrb (ENSGMOG00000019058)	ENSGMOG00000032660	kcnk6 (ENSGMOG00000019070)	ENSGMOG00000030129	ENSGMOG00000030523	PLD3 (ENSGMOG00000019115)	ENSGMOG00000030646	foxa3 (ENSGMOG00000023160)	irf2bp1 (ENSGMOG00000019134)	ENSGMOG00000032237	ENSGMOG00000027146
Euacanthomorphacea	ANCESTRAL SPECIES	33	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00940000161512	ENSGT00950000183059.b.b	ENSGT00940000166203
Pinecone sodierfish	MODERN SPECIES	4	foxa3 (ENSMMDG00005017101)	irf2bp1 (ENSMMDG00005017105)	polr1g (ENSMMDG00005017108)	ENSMMDG00005017111	ENSMMDG00005017118	eml2 (ENSMMDG00005017194)	rhbdd1 (ENSMMDG00005019090)	rhbdd1 (ENSMMDG00005019092)	rhbdd1 (ENSMMDG00005019094)	panx1a (ENSMMDG00005019101)	ENSMMDG00005019103	ENSMMDG00005019107	ZC3H4 (ENSMMDG00005019110)	ercc2 (ENSMMDG00005019115)	klc3 (ENSMMDG00005019124)	CKM (ENSMMDG00005019131) ##22	ENSMMDG00005019141	MARK4 (ENSMMDG00005019231)	TRPV2 (ENSMMDG00005021695)	FAM222B (ENSMMDG00005021720)	flot2b (ENSMMDG00005021731)	ostn (ENSMMDG00005021960)	ENSMMDG00005021962	IL1RAP (ENSMMDG00005021964)	IWS1 (ENSMMDG00005021970)	wdr74 (ENSMMDG00005021977)	zgc:162872 (ENSMMDG00005021981)	ilkap (ENSMMDG00005021984)	ENSMMDG00005021991	ENSMMDG00005022001	SHKBP1 (ENSMMDG00005022143)
Percomorphaceae	ANCESTRAL SPECIES	44	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203
Tiger tail seahorse	MODERN SPECIES	421	ENSHCOG00000015783	ENSHCOG00000015764	ENSHCOG00000015740	ENSHCOG00000015724	ENSHCOG00000015677	txndc17 (ENSHCOG00000015671)	nxn (ENSHCOG00000015667)	glod4 (ENSHCOG00000015657)	mrm3a (ENSHCOG00000015618)	BLTP2 (ENSHCOG00000015606)	sae1 (ENSHCOG00000015534)	ZC3H4 (ENSHCOG00000015498)	zgc:154093 (ENSHCOG00000015413)	ercc2 (ENSHCOG00000015395)	klc3 (ENSHCOG00000015361)	CKM (ENSHCOG00000015336) ##22	ENSHCOG00000015305	MARK4 (ENSHCOG00000015293)	ENSHCOG00000015246	ENSHCOG00000015241	ENSHCOG00000015237	ENSHCOG00000015231	SPTBN4 (ENSHCOG00000015225)	ENSHCOG00000015175	blvrb (ENSHCOG00000015157)	zgc:152863 (ENSHCOG00000015147)	ENSHCOG00000015146	hif1al (ENSHCOG00000015137)	DMWD (ENSHCOG00000015132)	ENSHCOG00000015122	ENSHCOG00000015108
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00900000142611	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Aplocheiloidei	ANCESTRAL SPECIES	84	ENSGT00390000009497.b	ENSGT00530000064411.a	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Mangrove rivulus	MODERN SPECIES	301										ccdc9 (ENSKMAG00000021383)	sae1 (ENSKMAG00000021368)	ZC3H4 (ENSKMAG00000021348)	zgc:154093 (ENSKMAG00000021338)	ercc2 (ENSKMAG00000021325)	klc3 (ENSKMAG00000021294)	ckma (ENSKMAG00000021273) ##22	MARK4 (ENSKMAG00000021234)	ENSKMAG00000021211	ENSKMAG00000021203	ENSKMAG00000021194	ENSKMAG00000021184	SPTBN4 (ENSKMAG00000021095)	blvrb (ENSKMAG00000021061)	ENSKMAG00000021055	kcnk6 (ENSKMAG00000021049)	ENSKMAG00000021038	ENSKMAG00000021029	PLD3 (ENSKMAG00000021013)	ENSKMAG00000020993
Turquoise killifish	MODERN SPECIES	1615	DCUN1D5 (ENSNFUG00015008441)	OMPA (ENSNFUG00015008458)	ENSNFUG00015008462	ENSNFUG00015008477	ENSNFUG00015008497	ENSNFUG00015008498	hif1al (ENSNFUG00015008507)	zgc:152863 (ENSNFUG00015008538)	pak4 (ENSNFUG00015008541)	ENSNFUG00015008547	ENSNFUG00015008550	ccdc9 (ENSNFUG00015008556)	sae1 (ENSNFUG00015008566)	ercc2 (ENSNFUG00015008585)	klc3 (ENSNFUG00015008637)	CKM (ENSNFUG00015009734) ##22	ENSNFUG00015009785	ENSNFUG00015009801	ENSNFUG00015009837	blvrb (ENSNFUG00015010041)	ENSNFUG00015010060	kcnk6 (ENSNFUG00015010076)	ENSNFUG00015010085	ENSNFUG00015010142	ENSNFUG00015010160	PLD3 (ENSNFUG00015010180)	foxa3 (ENSNFUG00015010221)	IRF2BP1 (ENSNFUG00015010227)	ENSNFUG00015010233	NOVA2 (ENSNFUG00015010245)	st8sia1 (ENSNFUG00015010277)
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a.f	ENSGT01100000263520.a.a.a.a.b.a.c.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Poecilia	ANCESTRAL SPECIES	2	ENSGT00390000009409	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
NAME_6	ANCESTRAL SPECIES	14	ENSGT00940000165978	ENSGT00940000159343	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000163299.B.b.b.h.c.a	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b
Sailfin molly	MODERN SPECIES	15														ENSPLAG00000023277	klc3 (ENSPLAG00000023319)	ENSPLAG00000023366 ##22	MARK4 (ENSPLAG00000023464)	ENSPLAG00000023488	ENSPLAG00000023496	ENSPLAG00000023502	ENSPLAG00000023509	ENSPLAG00000023684	blvrb (ENSPLAG00000023734)	ENSPLAG00000023756	kcnk6 (ENSPLAG00000023769)	ENSPLAG00000023804	ENSPLAG00000023816	PLD3 (ENSPLAG00000023827)	foxa3 (ENSPLAG00000023867)	irf2bp1 (ENSPLAG00000023882)	polr1g (ENSPLAG00000023890)
Amazon molly	MODERN SPECIES	300	ACTN4 (ENSPFOG00000017428)	ENSPFOG00000023661	ENSPFOG00000017317	DMWD (ENSPFOG00000017302)	hif1al (ENSPFOG00000017265)	zgc:152863 (ENSPFOG00000023603)	pak4 (ENSPFOG00000017238)	ccdc9 (ENSPFOG00000017207)	ENSPFOG00000022266	sae1 (ENSPFOG00000017192)	ZC3H4 (ENSPFOG00000017136)	zgc:154093 (ENSPFOG00000020091)	ercc2 (ENSPFOG00000017021)	ENSPFOG00000016988	klc3 (ENSPFOG00000016941)	CKM (ENSPFOG00000016916) ##22	ENSPFOG00000016884	ENSPFOG00000020089	ENSPFOG00000016866	ENSPFOG00000020087	SPTBN4 (ENSPFOG00000016533)	blvrb (ENSPFOG00000016480)	ENSPFOG00000016476	kcnk6 (ENSPFOG00000016473)	ENSPFOG00000016469	ENSPFOG00000016465	PLD3 (ENSPFOG00000016430)	foxa3 (ENSPFOG00000016416)	irf2bp1 (ENSPFOG00000016412)	polr1g (ENSPFOG00000016410)	ENSPFOG00000016392
Guppy	MODERN SPECIES	443	eif3k (ENSPREG00000020630)	zgc:85932 (ENSPREG00000020528)	ACTN4 (ENSPREG00000020467)	ENSPREG00000020415	DMWD (ENSPREG00000020399)	hif1al (ENSPREG00000019840)	zgc:152863 (ENSPREG00000019710)	pak4 (ENSPREG00000019697)	ENSPREG00000019683	ccdc9 (ENSPREG00000019655)	sae1 (ENSPREG00000019627)	ZC3H4 (ENSPREG00000019393)	zgc:154093 (ENSPREG00000019316)	ercc2 (ENSPREG00000019280)	klc3 (ENSPREG00000019255)	CKM (ENSPREG00000019235) ##22	MARK4 (ENSPREG00000019203)	ENSPREG00000019192	ENSPREG00000019161	SPTBN4 (ENSPREG00000019109)	blvrb (ENSPREG00000019074)	ENSPREG00000019068	kcnk6 (ENSPREG00000019057)	ENSPREG00000019036	PLD3 (ENSPREG00000019004)	foxa3 (ENSPREG00000018993)	irf2bp1 (ENSPREG00000018972)	ENSPREG00000018959	ENSPREG00000018946	GPR4 (ENSPREG00000018924)	eml2 (ENSPREG00000018891)
Platyfish	MODERN SPECIES	9	ACTN4 (ENSXMAG00000003126)	ENSXMAG00000003164	DMWD (ENSXMAG00000003182)	hif1al (ENSXMAG00000003186)	zgc:152863 (ENSXMAG00000003193)	pak4 (ENSXMAG00000003196)	ccdc9 (ENSXMAG00000004895)	ENSXMAG00000025670	sae1 (ENSXMAG00000003960)	ZC3H4 (ENSXMAG00000003957)	zgc:154093 (ENSXMAG00000019564)	ercc2 (ENSXMAG00000003922)	ENSXMAG00000027728	ENSXMAG00000024826	klc3 (ENSXMAG00000001420)	CKM (ENSXMAG00000018001) ##22	ENSXMAG00000022059	MARK4 (ENSXMAG00000005903)	ENSXMAG00000024251	ENSXMAG00000024942	ENSXMAG00000026531	ENSXMAG00000024393	SPTBN4 (ENSXMAG00000005963)	blvrb (ENSXMAG00000006057)	ENSXMAG00000028898	ENSXMAG00000025143	ENSXMAG00000012999	kcnk6 (ENSXMAG00000029960)	ENSXMAG00000029542	ENSXMAG00000028475	PLD3 (ENSXMAG00000013059)
NAME_4	ANCESTRAL SPECIES	85										ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.b.b	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B
Mummichog	MODERN SPECIES	622										ccdc9 (ENSFHEG00000002325)	sae1 (ENSFHEG00000002302)	ZC3H4 (ENSFHEG00000002266)	zgc:154093 (ENSFHEG00000002249)	ercc2 (ENSFHEG00000000072)	klc3 (ENSFHEG00000002193)	CKM (ENSFHEG00000002180) ##22	ENSFHEG00000002175	MARK4 (ENSFHEG00000002172)	ENSFHEG00000002166
Sheepshead minnow	MODERN SPECIES	621																CKM (ENSCVAG00000014525) ##22	MARK4 (ENSCVAG00000014469)	ENSCVAG00000014296	ENSCVAG00000014269	ENSCVAG00000014226	ENSCVAG00000014211	blvrb (ENSCVAG00000014148)	ENSCVAG00000014130	kcnk6 (ENSCVAG00000014123)	ENSCVAG00000014108	ENSCVAG00000014079	ENSCVAG00000014073	ENSCVAG00000014061	foxa3 (ENSCVAG00000014045)	irf2bp1 (ENSCVAG00000014034)	polr1g (ENSCVAG00000000356)
Oryzias	ANCESTRAL SPECIES	8	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.b.b	ENSGT00390000015655.a.m.a	ENSGT00390000010063	ENSGT00530000063816.c.b	ENSGT00950000182988.a.b.a	ENSGT00940000156251.a	ENSGT00940000155350.g	ENSGT00560000077232.B.g.a
Oryzias_b	ANCESTRAL SPECIES	32	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a.b	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509
Javanese ricefish	MODERN SPECIES	4	irf2bp1 (ENSOJAG00000017006)	foxa3 (ENSOJAG00000016992)	PLD3 (ENSOJAG00000016828)	ENSOJAG00000016810	ENSOJAG00000016800	ENSOJAG00000016785	ENSOJAG00000016760	ENSOJAG00000016748	zgc:152863 (ENSOJAG00000016739)	pak4 (ENSOJAG00000016724)	ccdc9 (ENSOJAG00000016705)	sae1 (ENSOJAG00000016671)	ZC3H4 (ENSOJAG00000016628)	zgc:154093 (ENSOJAG00000016621)	ercc2 (ENSOJAG00000015767)	CKM (ENSOJAG00000014807) ##22	MARK4 (ENSOJAG00000012712)	ENSOJAG00000012519	ENSOJAG00000012494	ENSOJAG00000012466	blvrb (ENSOJAG00000011961)	ENSOJAG00000011954	kcnk6 (ENSOJAG00000011948)	ENSOJAG00000011934	ENSOJAG00000011930	ENSOJAG00000011921	ENSOJAG00000011871	SLC35F2 (ENSOJAG00000011835)	clns1a (ENSOJAG00000011826)	aqp11 (ENSOJAG00000011818)	pak1 (ENSOJAG00000010240)
Indian medaka	MODERN SPECIES	12	foxa3 (ENSOMEG00000000616)	irf2bp1 (ENSOMEG00000022903)	polr1g (ENSOMEG00000022922)	ENSOMEG00000022934	ENSOMEG00000022949	GPR4 (ENSOMEG00000022961)	eml2 (ENSOMEG00000023021)	zgc:152863 (ENSOMEG00000023052)	pak4 (ENSOMEG00000023071)	ENSOMEG00000023085	sae1 (ENSOMEG00000023105)	ZC3H4 (ENSOMEG00000023128)	zgc:154093 (ENSOMEG00000023141)	ercc2 (ENSOMEG00000023166)	klc3 (ENSOMEG00000023186)	CKM (ENSOMEG00000023209) ##22	MARK4 (ENSOMEG00000023266)	ENSOMEG00000023293	ENSOMEG00000000630	ENSOMEG00000023310	ENSOMEG00000023331	ENSOMEG00000023348	ENSOMEG00000023361	blvrb (ENSOMEG00000023374)	ENSOMEG00000023386	kcnk6 (ENSOMEG00000023404)	ENSOMEG00000023431	ENSOMEG00000023453	ENSOMEG00000023462	ENSOMEG00000023472	ENSOMEG00000023487
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00390000007499	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000153887.B	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.b.b	ENSGT00390000015655.a.m.a	ENSGT00390000010063	ENSGT00530000063816.c.b	ENSGT00950000182988.a.b.a	ENSGT00940000156251.a	ENSGT00940000155350.g	ENSGT00560000077232.B.g.a
Japanese Medaka HdrR	MODERN SPECIES	4	foxa3 (ENSORLG00000022237)	irf2bp1 (ENSORLG00000024529)	ENSORLG00000001427	ENSORLG00000027761	ENSORLG00000021860	ENSORLG00000025858	eml2 (ENSORLG00000001463)	zgc:152863 (ENSORLG00000024927)	pak4 (ENSORLG00000001503)	ccdc9 (ENSORLG00000001516)	sae1 (ENSORLG00000001538)	ZC3H4 (ENSORLG00000029286)	zgc:154093 (ENSORLG00000001542)	ercc2 (ENSORLG00000001570)	klc3 (ENSORLG00000001581)	CKM (ENSORLG00000030295) ##22	ENSORLG00000001611	ENSORLG00000001615	ENSORLG00000022704	ENSORLG00000025963	ENSORLG00000001689	ENSORLG00000025195	ENSORLG00000025193	kcnk6 (ENSORLG00000001728)	ENSORLG00000001764	ENSORLG00000028971	ENSORLG00000001787	clns1a (ENSORLG00000001811)	aqp11 (ENSORLG00000028601)	pak1 (ENSORLG00000001860)	GDPD4 (ENSORLG00000001876)
Chinese medaka	MODERN SPECIES	538	sbds (ENSOSIG00000013618)	ENSOSIG00000013619	foxa3 (ENSOSIG00000013623)	irf2bp1 (ENSOSIG00000013626)	ENSOSIG00000013630	ENSOSIG00000013632	ENSOSIG00000013637	eml2 (ENSOSIG00000013652)	zgc:152863 (ENSOSIG00000013838)	pak4 (ENSOSIG00000013841)	ccdc9 (ENSOSIG00000013846)	sae1 (ENSOSIG00000013848)	zgc:154093 (ENSOSIG00000013850)	ercc2 (ENSOSIG00000013851)	klc3 (ENSOSIG00000013862)	CKM (ENSOSIG00000015130) ##22	ENSOSIG00000015170	MARK4 (ENSOSIG00000015171)	ENSOSIG00000015396	blvrb (ENSOSIG00000015409)	ENSOSIG00000015412	kcnk6 (ENSOSIG00000015414)	ENSOSIG00000015421	SLC35F2 (ENSOSIG00000015424)	clns1a (ENSOSIG00000015425)	aqp11 (ENSOSIG00000015427)	pak1 (ENSOSIG00000015442)	GDPD4 (ENSOSIG00000015583)	myo7aa (ENSOSIG00000015631)	flot2b (ENSOSIG00000017009)	FAM222B (ENSOSIG00000017014)
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b
Cichlidae	ANCESTRAL SPECIES	21	ENSGT00940000156536.e.b	ENSGT00530000064411.a	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	19	ENSGT00940000156536.e.b	ENSGT00530000064411.a	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	15	ENSGT00940000156536.e.b	ENSGT00940000175310	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Haplochromini	ANCESTRAL SPECIES	15	ENSGT00940000156155	ENSGT00390000009497.b	ENSGT00940000156536.e.b	ENSGT00940000175310	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a
Burton s mouthbrooder	MODERN SPECIES	416	dcun1d5 (ENSHBUG00000001916)	ompa (ENSHBUG00000001921)	CAPN5 (ENSHBUG00000001938)	panx1a (ENSHBUG00000001949)	ENSHBUG00000001978	DMWD (ENSHBUG00000002000)	hif1al (ENSHBUG00000000829)	zgc:152863 (ENSHBUG00000002038)	ENSHBUG00000002054	ccdc9 (ENSHBUG00000002079)	sae1 (ENSHBUG00000002103)	ZC3H4 (ENSHBUG00000002125)	zgc:154093 (ENSHBUG00000002138)	ercc2 (ENSHBUG00000002187)	klc3 (ENSHBUG00000002224)	CKM (ENSHBUG00000002240) ##22	MARK4 (ENSHBUG00000002284)	ENSHBUG00000002307	ENSHBUG00000002320	ENSHBUG00000002354	blvrb (ENSHBUG00000002376)	ENSHBUG00000002392	kcnk6 (ENSHBUG00000002403)	ENSHBUG00000002424	PLD3 (ENSHBUG00000002445)	foxa3 (ENSHBUG00000002454)	irf2bp1 (ENSHBUG00000002463)	polr1g (ENSHBUG00000001063)	NOVA1 (ENSHBUG00000002485)	GPR4 (ENSHBUG00000002495)	eml2 (ENSHBUG00000002552)
Haplochromini_A	ANCESTRAL SPECIES	23	ENSGT00940000156155	ENSGT00940000156536.e.b	ENSGT00390000009497.b	ENSGT00940000175310	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a
Haplochromini_B	ANCESTRAL SPECIES	27	ENSGT00940000156648.c	ENSGT00940000156155	ENSGT00390000009497.b	ENSGT00940000156536.e.b	ENSGT00940000153972.A.a	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a
Zebra mbuna	MODERN SPECIES	1096	dcun1d5 (ENSMZEG00005024475)	ompa (ENSMZEG00005024473)	CAPN5 (ENSMZEG00005024470)	panx1a (ENSMZEG00005024469)	ENSMZEG00005024463	DMWD (ENSMZEG00005024462)	hif1al (ENSMZEG00005024460)	zgc:152863 (ENSMZEG00005024458)	ENSMZEG00005024456	ccdc9 (ENSMZEG00005024453)	sae1 (ENSMZEG00005024449)	ZC3H4 (ENSMZEG00005024446)	zgc:154093 (ENSMZEG00005024445)	ercc2 (ENSMZEG00005024441)	klc3 (ENSMZEG00005024438)	CKM (ENSMZEG00005024436) ##22	MARK4 (ENSMZEG00005024430)	ENSMZEG00005024426	ENSMZEG00005024424	ENSMZEG00005024423	SPTBN4 (ENSMZEG00005024422)	blvrb (ENSMZEG00005024420)	ENSMZEG00005024419	kcnk6 (ENSMZEG00005024417)	ENSMZEG00005024414	PLD3 (ENSMZEG00005024412)	foxa3 (ENSMZEG00005024411)	irf2bp1 (ENSMZEG00005024410)	polr1g (ENSMZEG00005024408)	ENSMZEG00005024407	GPR4 (ENSMZEG00005024405)
Eastern happy	MODERN SPECIES	5	dcun1d5 (ENSACLG00000016814)	CAPN5 (ENSACLG00000016887)	ompa (ENSACLG00000016938)	panx1a (ENSACLG00000016951)	ENSACLG00000017048	DMWD (ENSACLG00000017242)	hif1al (ENSACLG00000017298)	zgc:152863 (ENSACLG00000017388)	ENSACLG00000017394	ccdc9 (ENSACLG00000017419)	sae1 (ENSACLG00000017451)	ZC3H4 (ENSACLG00000017500)	zgc:154093 (ENSACLG00000017552)	ercc2 (ENSACLG00000017573)	klc3 (ENSACLG00000017645)	CKM (ENSACLG00000017693) ##22	MARK4 (ENSACLG00000017756)	ENSACLG00000017849	ENSACLG00000017925	ENSACLG00000017941	SPTBN4 (ENSACLG00000017958)	blvrb (ENSACLG00000018120)	ENSACLG00000018139	kcnk6 (ENSACLG00000018159)	ENSACLG00000018176	ENSACLG00000018188	PLD3 (ENSACLG00000018212)	foxa3 (ENSACLG00000018238)	irf2bp1 (ENSACLG00000018248)	polr1g (ENSACLG00000018258)	ENSACLG00000018329
P. nyererei	MODERN SPECIES	447	CAPN5 (ENSPNYG00000021803)	ompa (ENSPNYG00000021817)	ENSPNYG00000021835	panx1a (ENSPNYG00000021838)	ENSPNYG00000021877	DMWD (ENSPNYG00000021885)	hif1al (ENSPNYG00000021897)	zgc:152863 (ENSPNYG00000021908)	ENSPNYG00000021913	ccdc9 (ENSPNYG00000021926)	sae1 (ENSPNYG00000021940)	ZC3H4 (ENSPNYG00000021966)	zgc:154093 (ENSPNYG00000021986)	ercc2 (ENSPNYG00000022007)	klc3 (ENSPNYG00000022051)	CKM (ENSPNYG00000022064) ##22	MARK4 (ENSPNYG00000022081)	ENSPNYG00000022104	ENSPNYG00000022129	blvrb (ENSPNYG00000022174)	ENSPNYG00000022189	kcnk6 (ENSPNYG00000022202)	ENSPNYG00000022215	PLD3 (ENSPNYG00000022240)	foxa3 (ENSPNYG00000022252)	irf2bp1 (ENSPNYG00000022257)	polr1g (ENSPNYG00000022270)	ENSPNYG00000022283	GPR4 (ENSPNYG00000022294)	ENSPNYG00000022298	eml2 (ENSPNYG00000022324)
Lyretail cichlid	MODERN SPECIES	426	CUL5 (ENSNBRG00000015907)	ENSNBRG00000015948	ompa (ENSNBRG00000015957)	panx1a (ENSNBRG00000015971)	ENSNBRG00000016014	DMWD (ENSNBRG00000016057)	hif1al (ENSNBRG00000016073)	zgc:152863 (ENSNBRG00000016096)	ENSNBRG00000016107	ccdc9 (ENSNBRG00000016143)	ENSNBRG00000016288	sae1 (ENSNBRG00000016306)	ZC3H4 (ENSNBRG00000016333)	zgc:154093 (ENSNBRG00000016367)	ercc2 (ENSNBRG00000016385)	ENSNBRG00000016461 ##22	ENSNBRG00000016494	ENSNBRG00000016500	MARK4 (ENSNBRG00000016515)	ENSNBRG00000016537	ENSNBRG00000016550	ENSNBRG00000016577	ENSNBRG00000016630	blvrb (ENSNBRG00000016659)	ENSNBRG00000016688	kcnk6 (ENSNBRG00000016706)	ENSNBRG00000016719	ENSNBRG00000016735	foxa3 (ENSNBRG00000016745)	irf2bp1 (ENSNBRG00000016755)	polr1g (ENSNBRG00000016766)
Nile tilapia	MODERN SPECIES	5	CAPN5 (ENSONIG00000007780)	ENSONIG00000007777	panx1a (ENSONIG00000007775)	ENSONIG00000007769	ENSONIG00000034463	hif1al (ENSONIG00000007759)	zgc:152863 (ENSONIG00000029103)	ENSONIG00000007751	ccdc9 (ENSONIG00000007748)	sae1 (ENSONIG00000007743)	ZC3H4 (ENSONIG00000007735)	zgc:154093 (ENSONIG00000007734)	ercc2 (ENSONIG00000007730)	klc3 (ENSONIG00000007722)	ENSONIG00000029316	CKM (ENSONIG00000007718) ##22	MARK4 (ENSONIG00000007711)	ENSONIG00000037847	SPTBN4 (ENSONIG00000007681)	ENSONIG00000041911	blvrb (ENSONIG00000007679)	ENSONIG00000032315	kcnk6 (ENSONIG00000007677)	ENSONIG00000028819	ENSONIG00000032673	PLD3 (ENSONIG00000007668)	foxa3 (ENSONIG00000032875)	irf2bp1 (ENSONIG00000007666)	polr1g (ENSONIG00000035771)	NOVA1 (ENSONIG00000007665)	ENSONIG00000039818
Midas cichlid	MODERN SPECIES	85					ENSACIG00000008310	DMWD (ENSACIG00000008224)	hif1al (ENSACIG00000008174)	zgc:152863 (ENSACIG00000008159)	pak4 (ENSACIG00000008132)	ccdc9 (ENSACIG00000008094)	sae1 (ENSACIG00000008076)	ZC3H4 (ENSACIG00000008057)	zgc:154093 (ENSACIG00000008044)	ercc2 (ENSACIG00000008002)	klc3 (ENSACIG00000007965)	CKM (ENSACIG00000007945) ##22	MARK4 (ENSACIG00000007908)	ENSACIG00000007892	ENSACIG00000007882	ENSACIG00000007855	SPTBN4 (ENSACIG00000007769)	blvrb (ENSACIG00000007750)	ENSACIG00000007732	kcnk6 (ENSACIG00000007709)	ENSACIG00000007692	PLD3 (ENSACIG00000007667)	foxa3 (ENSACIG00000007638)	ENSACIG00000007610	ENSACIG00000007544	ENSACIG00000007499	eml2 (ENSACIG00000007448)
Pomacentridae	ANCESTRAL SPECIES	27	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Pomacentridae_A	ANCESTRAL SPECIES	32						ENSGT00940000165053	ENSGT00940000160011	ENSGT00550000075007	ENSGT00990000203908	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Amphiprion	ANCESTRAL SPECIES	30						ENSGT00940000160011	ENSGT00550000075007	ENSGT00990000203908	ENSGT00530000063950.a.b	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00940000166085	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Clown anemonefish	MODERN SPECIES	2434														ENSAOCG00000003931	ENSAOCG00000003936	ENSAOCG00000003955 ##22	MARK4 (ENSAOCG00000003969)
Orange clownfish	MODERN SPECIES	23	DMWD (ENSAPEG00000017294)	ENSAPEG00000017219	zgc:154093 (ENSAPEG00000017215)	ENSAPEG00000017188	ZC3H4 (ENSAPEG00000017098)	ENSAPEG00000017083	sae1 (ENSAPEG00000017029)	ccdc9 (ENSAPEG00000017007)	pak4 (ENSAPEG00000016955)	zgc:152863 (ENSAPEG00000016923)	hif1al (ENSAPEG00000016855)	ENSAPEG00000016816	ercc2 (ENSAPEG00000016712)	klc3 (ENSAPEG00000016658)	ENSAPEG00000016649	CKM (ENSAPEG00000016617) ##22	MARK4 (ENSAPEG00000016512)	ENSAPEG00000016483	ENSAPEG00000016473	ENSAPEG00000016462	ENSAPEG00000016445	ENSAPEG00000016312	blvrb (ENSAPEG00000016288)	ENSAPEG00000016281	kcnk6 (ENSAPEG00000016275)	ENSAPEG00000016237	ENSAPEG00000016222	PLD3 (ENSAPEG00000016198)	foxa3 (ENSAPEG00000016188)	irf2bp1 (ENSAPEG00000016156)	polr1g (ENSAPEG00000016153)
Spiny chromis	MODERN SPECIES	313							zgc:154093 (ENSAPOG00000014080)	ZC3H4 (ENSAPOG00000014063)	sae1 (ENSAPOG00000000382)	ccdc9 (ENSAPOG00000014008)	pak4 (ENSAPOG00000013944)	zgc:152863 (ENSAPOG00000013909)	hif1al (ENSAPOG00000013891)	ercc2 (ENSAPOG00000000375)	klc3 (ENSAPOG00000000373)	CKM (ENSAPOG00000013645) ##22	ENSAPOG00000013617	MARK4 (ENSAPOG00000013608)	ENSAPOG00000013511	ENSAPOG00000013499	ENSAPOG00000013493
Bicolor damselfish	MODERN SPECIES	2246																ENSSPAG00000020685 ##22	ENSSPAG00000020716	MARK4 (ENSSPAG00000020723)	ENSSPAG00000020758	ENSSPAG00000020771	ENSSPAG00000020811
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b
Pleuronectoidei	ANCESTRAL SPECIES	35	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00990000210326	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000162179.e.a.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Tongue sole	MODERN SPECIES	14	ENSCSEG00000006345	ACTN4 (ENSCSEG00000006298)	zgc:85932 (ENSCSEG00000006288)	eif3k (ENSCSEG00000006285)	MAP4K1 (ENSCSEG00000006273)	hif1al (ENSCSEG00000006117)	DMWD (ENSCSEG00000006104)	ENSCSEG00000006091	ccdc9 (ENSCSEG00000006079)	ENSCSEG00000006077	sae1 (ENSCSEG00000006067)	ZC3H4 (ENSCSEG00000006057)	zgc:154093 (ENSCSEG00000006054)	ercc2 (ENSCSEG00000006041)	klc3 (ENSCSEG00000006036)	CKM (ENSCSEG00000006027) ##22	MARK4 (ENSCSEG00000005996)	ENSCSEG00000005994	ENSCSEG00000005983	ENSCSEG00000005974	SPTBN4 (ENSCSEG00000005954)	blvrb (ENSCSEG00000005949)	ENSCSEG00000005944	kcnk6 (ENSCSEG00000005940)	ENSCSEG00000005936	ENSCSEG00000005933	PLD3 (ENSCSEG00000005923)	foxa3 (ENSCSEG00000005919)	irf2bp1 (ENSCSEG00000005917)	polr1g (ENSCSEG00000005914)	ENSCSEG00000005910
Turbot	MODERN SPECIES	15	EIF3K (ENSSMAG00000019485)	ENSSMAG00000019506	ENSSMAG00000019528	ENSSMAG00000036191	ENSSMAG00000019553	hif1al (ENSSMAG00000019558)	ENSSMAG00000019605	pak4 (ENSSMAG00000019623)	CCDC9 (ENSSMAG00000019654)	ENSSMAG00000019684	sae1 (ENSSMAG00000019688)	ZC3H4 (ENSSMAG00000019705)	ercc2 (ENSSMAG00000019720)	zgc:154093 (ENSSMAG00000019769)	klc3 (ENSSMAG00000019778)	CKM (ENSSMAG00000019804) ##22	ENSSMAG00000024362	ENSSMAG00000019840	ENSSMAG00000019945	ENSSMAG00000019949	ENSSMAG00000027612	ENSSMAG00000033788	ENSSMAG00000019985	blvrb (ENSSMAG00000030546)	ENSSMAG00000020147	kcnk6 (ENSSMAG00000020148)	ENSSMAG00000034755	ENSSMAG00000029001	ENSSMAG00000020165	foxa3 (ENSSMAG00000022453)	irf2bp1 (ENSSMAG00000020176)
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00990000209072	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
Seriola	ANCESTRAL SPECIES	38	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00990000209072	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT01100000263533.b.b.a.a.b	ENSGT00940000162921	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Greater amberjack	MODERN SPECIES	14	DMWD (ENSSDUG00000002866)	hif1al (ENSSDUG00000002805)	zgc:152863 (ENSSDUG00000002772)	pak4 (ENSSDUG00000002720)	ENSSDUG00000002691	CCDC9 (ENSSDUG00000002672)	ENSSDUG00000002661	sae1 (ENSSDUG00000002581)	ZC3H4 (ENSSDUG00000002538)	zgc:154093 (ENSSDUG00000002517)	ENSSDUG00000002509	ENSSDUG00000002493	ercc2 (ENSSDUG00000002397)	klc3 (ENSSDUG00000002344)	ENSSDUG00000002337	CKM (ENSSDUG00000002308) ##22	MARK4 (ENSSDUG00000002245)	ENSSDUG00000002229	ENSSDUG00000002195	ENSSDUG00000002174	ENSSDUG00000002167	SPTBN4 (ENSSDUG00000002069)	blvrb (ENSSDUG00000002045)	ENSSDUG00000002034	kcnk6 (ENSSDUG00000002020)	ENSSDUG00000002001	ENSSDUG00000001979	PLD3 (ENSSDUG00000001932)	foxa3 (ENSSDUG00000001899)	ENSSDUG00000001888	polr1g (ENSSDUG00000001874)
Yellowtail amberjack	MODERN SPECIES	2952																ENSSLDG00000002552 ##22	ENSSLDG00000002609	MARK4 (ENSSLDG00000002620)	ENSSLDG00000002709	ENSSLDG00000002739	ENSSLDG00000002776	ENSSLDG00000002790	SPTBN4 (ENSSLDG00000002814)	blvrb (ENSSLDG00000003037)	ENSSLDG00000003083	kcnk6 (ENSSLDG00000003090)	ENSSLDG00000003104	PLD3 (ENSSLDG00000003145)	foxa3 (ENSSLDG00000003162)	irf2bp1 (ENSSLDG00000003172)	polr1g (ENSSLDG00000003180)
Barramundi perch	MODERN SPECIES	109									ccdc9 (ENSLCAG00010009389)	sae1 (ENSLCAG00010009375)	ZC3H4 (ENSLCAG00010009369)	zgc:154093 (ENSLCAG00010009365)	ercc2 (ENSLCAG00010009350)	klc3 (ENSLCAG00010009229)	ENSLCAG00010009199	CKM (ENSLCAG00010009057) ##22	MARK4 (ENSLCAG00010009000)	ENSLCAG00010008953	ENSLCAG00010008941	ENSLCAG00010008937	ENSLCAG00010008513	blvrb (ENSLCAG00010008406)	ENSLCAG00010008398	kcnk6 (ENSLCAG00010008395)	ENSLCAG00010008387	ENSLCAG00010008380	PLD3 (ENSLCAG00010008373)	foxa3 (ENSLCAG00010008370)	irf2bp1 (ENSLCAG00010008366)	polr1g (ENSLCAG00010008363)	ENSLCAG00010008353
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00390000010744.m.c	ENSGT00940000156014.g
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000017172	ACTN4 (ENSMAMG00000017079)	ENSMAMG00000017064	ENSMAMG00000017036	MAP4K1 (ENSMAMG00000017021)	ENSMAMG00000016996	hif1al (ENSMAMG00000016930)	ENSMAMG00000016923	pak4 (ENSMAMG00000016903)	CCDC9 (ENSMAMG00000016880)	sae1 (ENSMAMG00000016845)	ENSMAMG00000025645	zgc:154093 (ENSMAMG00000026176)	ercc2 (ENSMAMG00000016724)	klc3 (ENSMAMG00000016669)	CKM (ENSMAMG00000016645) ##22	ENSMAMG00000016584	ENSMAMG00000016567	ENSMAMG00000026704	ENSMAMG00000025363	ENSMAMG00000016420	blvrb (ENSMAMG00000016407)	ENSMAMG00000016404	kcnk6 (ENSMAMG00000016396)	ENSMAMG00000016366	ENSMAMG00000016343	foxa3 (ENSMAMG00000016328)	irf2bp1 (ENSMAMG00000016322)	ENSMAMG00000016319	ENSMAMG00000016281	ENSMAMG00000016268
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000161740	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00390000010744.m.c
Climbing perch	MODERN SPECIES	4	ENSATEG00000004882	EIF3K (ENSATEG00000004929)	MAP4K1 (ENSATEG00000004907)	ENSATEG00000004977	hif1al (ENSATEG00000005012)	ENSATEG00000005062	pak4 (ENSATEG00000005072)	CCDC9 (ENSATEG00000005109)	ENSATEG00000005122	sae1 (ENSATEG00000005142)	ENSATEG00000029528	ENSATEG00000026714	zgc:154093 (ENSATEG00000005248)	ercc2 (ENSATEG00000005268)	klc3 (ENSATEG00000005340)	CKM (ENSATEG00000005383) ##22	ENSATEG00000005421	ENSATEG00000027802	SPTBN4 (ENSATEG00000006069)	blvrb (ENSATEG00000006287)	ENSATEG00000006290	kcnk6 (ENSATEG00000006295)	PLD3 (ENSATEG00000006458)	foxa3 (ENSATEG00000006467)	irf2bp1 (ENSATEG00000006477)	ENSATEG00000006485	ENSATEG00000006500	ENSATEG00000006537	ENSATEG00000006581	ENSATEG00000006703	ENSATEG00000027671
Siamese fighting fish	MODERN SPECIES	4	ENSBSLG00000002728	ENSBSLG00000002711	NYAP2 (ENSBSLG00000002694)	ENSBSLG00000002674	ENSBSLG00000002559	DMWD (ENSBSLG00000002536)	hif1al (ENSBSLG00000002431)	zgc:152863 (ENSBSLG00000002395)	ENSBSLG00000002374	ccdc9 (ENSBSLG00000002358)	sae1 (ENSBSLG00000002324)	ZC3H4 (ENSBSLG00000002283)	zgc:154093 (ENSBSLG00000002255)	ercc2 (ENSBSLG00000026728)	klc3 (ENSBSLG00000026727)	CKM (ENSBSLG00000026726) ##22	MARK4 (ENSBSLG00000026725)	ENSBSLG00000026724	ENSBSLG00000026723	ENSBSLG00000026722	ENSBSLG00000026721	blvrb (ENSBSLG00000026720)	ENSBSLG00000026719	kcnk6 (ENSBSLG00000026718)	PLD3 (ENSBSLG00000026713)	foxa3 (ENSBSLG00000026711)	irf2bp1 (ENSBSLG00000026710)	ENSBSLG00000026709	ENSBSLG00000026708	GPR4 (ENSBSLG00000026705)	eml2 (ENSBSLG00000026704)
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Ballan wrasse	MODERN SPECIES	200							hif1al (ENSLBEG00000010994)	zgc:152863 (ENSLBEG00000010953)	pak4 (ENSLBEG00000010883)	ccdc9 (ENSLBEG00000010829)	sae1 (ENSLBEG00000010775)	ZC3H4 (ENSLBEG00000010735)	zgc:154093 (ENSLBEG00000010700)	ercc2 (ENSLBEG00000010573)	klc3 (ENSLBEG00000010476)	CKM (ENSLBEG00000010410) ##22	MARK4 (ENSLBEG00000010272)	myo7aa (ENSLBEG00000010075)	GDPD4 (ENSLBEG00000009985)	pak1 (ENSLBEG00000009841)	aqp11 (ENSLBEG00000009767)	clns1a (ENSLBEG00000009737)	ENSLBEG00000009701	panx1a (ENSLBEG00000009670)	ENSLBEG00000009526	med17 (ENSLBEG00000009459)	ech1 (ENSLBEG00000009395)	ENSLBEG00000009182	FAM222B (ENSLBEG00000009142)	flot2b (ENSLBEG00000009104)	rhbdd1 (ENSLBEG00000008984)
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Perciformes	ANCESTRAL SPECIES	10	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000162953	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00390000018436.b	ENSGT00940000158344.a.a	ENSGT00910000144115.b	ENSGT01030000234642.a.b.b.d.b.c.a	ENSGT00940000159792.C	ENSGT00940000166340	ENSGT00990000209072	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00940000157623	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000161095	ENSGT00940000162953	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000153887.B
Lumpfish	MODERN SPECIES	4												ENSCLMG00005004507	si:ch211-215a10.4 (ENSCLMG00005004658)	ercc2 (ENSCLMG00005004783)	klc3 (ENSCLMG00005005638)	CKM (ENSCLMG00005005643) ##22	MARK4 (ENSCLMG00005005684)	ENSCLMG00005008228	ENSCLMG00005008236	ENSCLMG00005008239	pid1 (ENSCLMG00005008240)	dner (ENSCLMG00005008241)	trip12 (ENSCLMG00005008254)	grk7b (ENSCLMG00005009124)	fzd9b (ENSCLMG00005009134)	baz1b (ENSCLMG00005009135)	bcl7bb (ENSCLMG00005009136)	hip1 (ENSCLMG00005009137)	ENSCLMG00005009156	gdpd1 (ENSCLMG00005009157)	tmem120ab (ENSCLMG00005009164)
Stickleback	MODERN SPECIES		ENSGACG00000012297	ENSGACG00000012299	slc8a2b (ENSGACG00000012302)	ENSGACG00000012311	hnrnpl2 (ENSGACG00000012321)	pak4 (ENSGACG00000012327)	zgc:152863 (ENSGACG00000012331)	ccdc9 (ENSGACG00000012335)	ENSGACG00000012339	sae1 (ENSGACG00000012342)	ZC3H4 (ENSGACG00000012374)	zgc:154093 (ENSGACG00000012382)	DNAH2 (ENSGACG00000012383)	ercc2 (ENSGACG00000012407)	klc3 (ENSGACG00000012419)	CKM (ENSGACG00000012427) ##22	MARK4 (ENSGACG00000012485)	ENSGACG00000012515	ENSGACG00000012517	ENSGACG00000012523	SPTBN4 (ENSGACG00000012524)	blvrb (ENSGACG00000012552)	ENSGACG00000012569	kcnk6 (ENSGACG00000012571)	ENSGACG00000012586	ENSGACG00000012590	ENSGACG00000012592	ENSGACG00000012604	PLD3 (ENSGACG00000012605)	foxa3 (ENSGACG00000012621)	irf2bp1 (ENSGACG00000012622)
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000179739	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B
Pike perch	MODERN SPECIES	19	zgc:85932 (ENSSLUG00000014858)	eif3k (ENSSLUG00000014840)	ENSSLUG00000014828	ENSSLUG00000014820	DMWD (ENSSLUG00000014814)	hif1al (ENSSLUG00000014784)	zgc:152863 (ENSSLUG00000014779)	pak4 (ENSSLUG00000014738)	CCDC9 (ENSSLUG00000014726)	ENSSLUG00000014720	sae1 (ENSSLUG00000014712)	ZC3H4 (ENSSLUG00000014697)	zgc:154093 (ENSSLUG00000014685)	ercc2 (ENSSLUG00000013628)	klc3 (ENSSLUG00000012176)	CKM (ENSSLUG00000012056) ##22	MARK4 (ENSSLUG00000011559)	ENSSLUG00000011525	ENSSLUG00000011521	ENSSLUG00000011511	ENSSLUG00000011509	SPTBN4 (ENSSLUG00000005732)	blvrb (ENSSLUG00000005261)	ENSSLUG00000005255	kcnk6 (ENSSLUG00000005248)	ENSSLUG00000005229	cxcl19 (ENSSLUG00000005209)	trmt10b (ENSSLUG00000014702)	intu (ENSSLUG00000014679)	ino80b (ENSSLUG00000014672)	AADAT (ENSSLUG00000014589)
Channel bull blenny	MODERN SPECIES	4	eif3k (ENSCGOG00000002000)	MAP4K1 (ENSCGOG00000001987)	DMWD (ENSCGOG00000001979)	hif1al (ENSCGOG00000001822)	zgc:152863 (ENSCGOG00000001812)	ENSCGOG00000001778	ENSCGOG00000001774	ccdc9 (ENSCGOG00000001770)	ENSCGOG00000001767	sae1 (ENSCGOG00000001643)	ZC3H4 (ENSCGOG00000001609)	zgc:154093 (ENSCGOG00000001588)	ercc2 (ENSCGOG00000021321)	klc3 (ENSCGOG00000021198)	ENSCGOG00000021187	CKM (ENSCGOG00000020913) ##22	MARK4 (ENSCGOG00000020827)	ENSCGOG00000020799	ENSCGOG00000020795	ENSCGOG00000020791	ENSCGOG00000020785	ENSCGOG00000020783	ENSCGOG00000020779	SPTBN4 (ENSCGOG00000020762)	blvrb (ENSCGOG00000020754)	ENSCGOG00000020753	kcnk6 (ENSCGOG00000020751)	ENSCGOG00000020729	PLD3 (ENSCGOG00000020586)	foxa3 (ENSCGOG00000020577)	irf2bp1 (ENSCGOG00000020575)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT01070000253869	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.a	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b
Gilthead seabream	MODERN SPECIES	11	ENSSAUG00010015874	ENSSAUG00010015876	zgc:85932 (ENSSAUG00010015877)	eif3k (ENSSAUG00010015878)	ENSSAUG00010015881	DMWD (ENSSAUG00010015887)	hif1al (ENSSAUG00010015894)	zgc:152863 (ENSSAUG00010015921)	ENSSAUG00010015927	ccdc9 (ENSSAUG00010015933)	sae1 (ENSSAUG00010015947)	ZC3H4 (ENSSAUG00010003836)	zgc:154093 (ENSSAUG00010003843)	ercc2 (ENSSAUG00010003850)	klc3 (ENSSAUG00010003900)	CKM (ENSSAUG00010005322) ##22	ENSSAUG00010005330	MARK4 (ENSSAUG00010005345)	ENSSAUG00010005394	ENSSAUG00010005397	ENSSAUG00010005401	ENSSAUG00010005404	ENSSAUG00010005509	blvrb (ENSSAUG00010010065)	ENSSAUG00010010067	kcnk6 (ENSSAUG00010010068)	ENSSAUG00010010069	ENSSAUG00010010071	ENSSAUG00010010074	ENSSAUG00010010075	ENSSAUG00010010077
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00990000203908	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00940000164427.a.a	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a.c.b	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.a	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362
European seabass	MODERN SPECIES	3	ACTN4 (ENSDLAG00005016446)	ENSDLAG00005016361	ENSDLAG00005032033	MAP4K1 (ENSDLAG00005016305)	ENSDLAG00005016290	ENSDLAG00005016161	ENSDLAG00005031941	CCDC9 (ENSDLAG00005028930)	ENSDLAG00005030869	sae1 (ENSDLAG00005016016)	ZC3H4 (ENSDLAG00005015976)	zgc:154093 (ENSDLAG00005032365)	ercc2 (ENSDLAG00005015277)	klc3 (ENSDLAG00005014953)	ENSDLAG00005014932	CKM (ENSDLAG00005014209) ##22	ENSDLAG00005014354	ENSDLAG00005014335	ENSDLAG00005014317	ENSDLAG00005014309	ENSDLAG00005012820	ENSDLAG00005033501	kcnk6 (ENSDLAG00005027448)	ENSDLAG00005034851	ENSDLAG00005033731	ENSDLAG00005012595	foxa3 (ENSDLAG00005012583)	irf2bp1 (ENSDLAG00005012579)	ENSDLAG00005012570	ENSDLAG00005012534	ENSDLAG00005012529
Large yellow croaker	MODERN SPECIES	479	zgc:85932 (ENSLCRG00005017796)	eif3k (ENSLCRG00005017791)	MAP4K1 (ENSLCRG00005016815)	DMWD (ENSLCRG00005016801)	hif1al (ENSLCRG00005016796)	zgc:152863 (ENSLCRG00005016794)	pak4 (ENSLCRG00005016791)	ccdc9 (ENSLCRG00005016790)	ENSLCRG00005016788	sae1 (ENSLCRG00005016787)	ENSLCRG00005016785	ercc2 (ENSLCRG00005016783)	klc3 (ENSLCRG00005016671)	ENSLCRG00005016661	ENSLCRG00005016659	CKM (ENSLCRG00005016657) ##22	ENSLCRG00005016649	ENSLCRG00005016647	ENSLCRG00005016646	ENSLCRG00005016643	SPTBN4 (ENSLCRG00005016603)	blvrb (ENSLCRG00005016601)	ENSLCRG00005016598	kcnk6 (ENSLCRG00005016597)	ENSLCRG00005016595	ENSLCRG00005016594	PLD3 (ENSLCRG00005016585)	foxa3 (ENSLCRG00005016584)	irf2bp1 (ENSLCRG00005016583)	polr1g (ENSLCRG00005016582)	ENSLCRG00005016579
Tetraodontidae	ANCESTRAL SPECIES	10	ENSGT00940000159343	ENSGT00940000165978	ENSGT00390000009409	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00940000166085	ENSGT00940000166340	ENSGT00940000159792.C	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01070000253869	ENSGT00950000182772.A.a.a.b.r.b ##22	ENSGT00940000159555.v.a	ENSGT00950000183052.b.c.b.a.c.a	ENSGT00940000156343.lb.a	ENSGT00390000014810.a	ENSGT00940000168703	ENSGT00940000160509	ENSGT00940000165073.a.b.b.a	ENSGT00940000160366	ENSGT00950000183059.b.b	ENSGT00940000166203	ENSGT00940000162120.f.b	ENSGT00450000040362	ENSGT00940000155573.g.a	ENSGT00940000153887.B	ENSGT00390000010744.m.c
Fugu	MODERN SPECIES	2	MAP4K1 (ENSTRUG00000008924)	DMWD (ENSTRUG00000008770)	hif1al (ENSTRUG00000008563)	ENSTRUG00000030434	zgc:152863 (ENSTRUG00000021972)	ENSTRUG00000027410	pak4 (ENSTRUG00000008318)	ENSTRUG00000027544	ccdc9 (ENSTRUG00000008201)	sae1 (ENSTRUG00000008065)	ZC3H4 (ENSTRUG00000007843)	zgc:154093 (ENSTRUG00000007807)	ercc2 (ENSTRUG00000007303)	klc3 (ENSTRUG00000007207)	ENSTRUG00000029021	ckma (ENSTRUG00000006969) ##22	MARK4 (ENSTRUG00000006414)	ENSTRUG00000005321	SPTBN4 (ENSTRUG00000004257)	blvrb (ENSTRUG00000004082)	ENSTRUG00000025168	kcnk6 (ENSTRUG00000003814)	ENSTRUG00000026358	PLD3 (ENSTRUG00000016296)	foxa3 (ENSTRUG00000025013)	irf2bp1 (ENSTRUG00000022195)	ENSTRUG00000021943	ENSTRUG00000016275	ENSTRUG00000031296	eml2 (ENSTRUG00000016192)	rhbdd1 (ENSTRUG00000016174)
Tetraodon	MODERN SPECIES	8	ACTN4 (ENSTNIG00000014277)	zgc:85932 (ENSTNIG00000006536)	eif3k (ENSTNIG00000006537)	ENSTNIG00000006538	MAP4K1 (ENSTNIG00000006534)	DMWD (ENSTNIG00000006652)	hif1al (ENSTNIG00000006798)	zgc:152863 (ENSTNIG00000006799)	pak4 (ENSTNIG00000006800)	ccdc9 (ENSTNIG00000006801)	sae1 (ENSTNIG00000013431)	ZC3H4 (ENSTNIG00000013432)	zgc:154093 (ENSTNIG00000000493)	ercc2 (ENSTNIG00000018980)	klc3 (ENSTNIG00000018981)	ckma (ENSTNIG00000018982) ##22	MARK4 (ENSTNIG00000018983)	ENSTNIG00000018984	ENSTNIG00000018985	blvrb (ENSTNIG00000018986)	kcnk6 (ENSTNIG00000018987)	ENSTNIG00000018988	ENSTNIG00000018989	PLD3 (ENSTNIG00000018990)	foxa3 (ENSTNIG00000018991)	irf2bp1 (ENSTNIG00000018992)	NOVA1 (ENSTNIG00000018993)	ENSTNIG00000018994	eml2 (ENSTNIG00000018995)	rhbdd1 (ENSTNIG00000018996)	ENSTNIG00000000460
Sarcopterygii	ANCESTRAL SPECIES	492													ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Coelacanth	MODERN SPECIES	324	qpctla (ENSLACG00000006756)	FBXO46 (ENSLACG00000007162)	ENSLACG00000007720	EML2 (ENSLACG00000009810)	GPR4 (ENSLACG00000010500)	OPA3 (ENSLACG00000011561)	VASP (ENSLACG00000011786)	FOSB (ENSLACG00000013070)	ENSLACG00000013449	ENSLACG00000013574	ENSLACG00000013798	PPP1R13L (ENSLACG00000014022)	ERCC2 (ENSLACG00000014155)	ENSLACG00000014371 #18	ENSLACG00000022312	CKM (ENSLACG00000014633) ##22	MARK4 (ENSLACG00000014767)	CCDC9 (ENSLACG00000015361)	SAE1 (ENSLACG00000015982)	ZC3H4 (ENSLACG00000016248)	ENSLACG00000016371	zgc:154093 (ENSLACG00000016524)	ppp1r14ab (ENSLACG00000016603)	ENSLACG00000022177	KCNK6 (ENSLACG00000016730)	ENSLACG00000016768	LTBP4 (ENSLACG00000016869)	ENSLACG00000017469	YIF1B (ENSLACG00000017513)	ENSLACG00000017554	PINK1 (ENSLACG00000017697)
Tetrapoda	ANCESTRAL SPECIES	204													ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000161740	ENSGT00450000040421	ENSGT00390000017045	ENSGT00500000044869.a.b
Anura	ANCESTRAL SPECIES	86	ENSGT00940000175813	ENSGT00390000017608	ENSGT00940000161006.b	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000166395	ENSGT00940000160358	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000161740	ENSGT00450000040421	ENSGT00390000017045	ENSGT00500000044869.b	ENSGT01030000234517.F ##30	ENSGT00940000154133.B	ENSGT00950000183135.A.a	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00390000018039	ENSGT00390000012948.a
Frog	MODERN SPECIES	8	ENSXETG00000018263	snrpd2 (ENSXETG00000002173)	pglyrp1 (ENSXETG00000018262)	qpctl (ENSXETG00000018261)	fbxo46 (ENSXETG00000047788)	gipr (ENSXETG00000018255)	eml1 (ENSXETG00000018242)	vasp (ENSXETG00000018239)	gpr4 (ENSXETG00000033328)	opa3 (ENSXETG00000018240)	rtn2 (ENSXETG00000024454)	fosb (ENSXETG00000035471)	ENSXETG00000039831	ppp1r13l (ENSXETG00000018235)	ercc2 (ENSXETG00000018229)	ckm (ENSXETG00000019108) ##22	ENSXETG00000037947	mark4 (ENSXETG00000019104)	exoc3l2 (ENSXETG00000040252) ##27	nova2 (ENSXETG00000019101)	sympk (ENSXETG00000024453)	mypop (ENSXETG00000042112)	rsph6a (ENSXETG00000019096)	dmpk (ENSXETG00000026278) ##30	ENSXETG00000048953	ENSXETG00000048929	ccdc61 (ENSXETG00000024452)	clptm1 (ENSXETG00000033140)	relb (ENSXETG00000031521)	ENSXETG00000034450	ppp1r37 (ENSXETG00000019084)
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000025546	ENSLLEG00000025522	ENSLLEG00000025452	EML2 (ENSLLEG00000025283)	GPR4 (ENSLLEG00000025247)	OPA3 (ENSLLEG00000025207)	VASP (ENSLLEG00000025032)	ENSLLEG00000024989	RTN2 (ENSLLEG00000024905)	ENSLLEG00000024588	FOSB (ENSLLEG00000024468)	ENSLLEG00000024432	PPP1R13L (ENSLLEG00000024038)	ERCC2 (ENSLLEG00000023926)	ENSLLEG00000023902	CKM (ENSLLEG00000023579) ##22	MARK4 (ENSLLEG00000023164)	ENSLLEG00000022901 ##27	ENSLLEG00000022829	MYPOP (ENSLLEG00000022786)	ENSLLEG00000022748	SYMPK (ENSLLEG00000021981)	ENSLLEG00000021857	ENSLLEG00000021328 ##30	ENSLLEG00000021180	NANOS2 (ENSLLEG00000021141)	CLPTM1 (ENSLLEG00000020915)	RELB (ENSLLEG00000020791)	ENSLLEG00000020767	PPP1R37 (ENSLLEG00000020642)	ENSLLEG00000020605
Amniota	ANCESTRAL SPECIES	34	ENSGT01100000263564.a	ENSGT00940000158721	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Mammalia	ANCESTRAL SPECIES	75	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B
Platypus	MODERN SPECIES	16	GPR4 (ENSOANG00000050364)	OPA3 (ENSOANG00000036874)	ENSOANG00000047387	ENSOANG00000050926	ENSOANG00000043601	ENSOANG00000038061	FOSB (ENSOANG00000047430)	SNRPD2 (ENSOANG00000000813)	ENSOANG00000049944	ENSOANG00000036797	ENSOANG00000041617	ENSOANG00000002088	ENSOANG00000006354	KLC3 (ENSOANG00000038764)	ENSOANG00000049426	CKM (ENSOANG00000000782) ##22	MARK4 (ENSOANG00000041059)	EXOC3L2 (ENSOANG00000050767) ##27	ENSOANG00000013002	ENSOANG00000013001	PPP1R37 (ENSOANG00000049487)	GEMIN7 (ENSOANG00000008945)	ENSOANG00000043610	CLASRP (ENSOANG00000042693)	RELB (ENSOANG00000044083)	CLPTM1 (ENSOANG00000039979)	ENSOANG00000045516	ENSOANG00000020309	ENSOANG00000037534	ENSOANG00000019717	ENSOANG00000002747
Theria	ANCESTRAL SPECIES	27	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000011584	ENSGT00950000182929.B.b
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000177245	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Diprotodontia	ANCESTRAL SPECIES	109										ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Diprotodontia_a	ANCESTRAL SPECIES	103										ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Common wonbat	MODERN SPECIES	1										FOSB (ENSVURG00010000002)	ENSVURG00010000003	ENSVURG00010000004	PPP1R13L (ENSVURG00010000005)	ERCC2 (ENSVURG00010000006)	KLC3 (ENSVURG00010000007)	CKM (ENSVURG00010000008) ##22	MARK4 (ENSVURG00010000009)	EXOC3L2 (ENSVURG00010000010) ##27
koala	MODERN SPECIES	427										FOSB (ENSPCIG00000022951)	ENSPCIG00000022946	PPP1R13L (ENSPCIG00000022941)	ENSPCIG00000022939	ERCC2 (ENSPCIG00000022927)	KLC3 (ENSPCIG00000022923)	CKM (ENSPCIG00000010399) ##22	MARK4 (ENSPCIG00000010407)	EXOC3L2 (ENSPCIG00000010412) ##27
Wallaby	MODERN SPECIES	10282																CKM (ENSMEUG00000011890) ##22
Tasmanian devil	MODERN SPECIES	2	DMPK (ENSSHAG00000000724)	SIX5 (ENSSHAG00000024498)	ENSSHAG00000001754	ENSSHAG00000028308	ENSSHAG00000023843	ENSSHAG00000029129	GIPR (ENSSHAG00000030736)	EML2 (ENSSHAG00000002041)	VASP (ENSSHAG00000003369)	RTN2 (ENSSHAG00000003830)	FOSB (ENSSHAG00000032198)	ENSSHAG00000003117	PPP1R13L (ENSSHAG00000002660)	ERCC2 (ENSSHAG00000002169)	KLC3 (ENSSHAG00000001691)	CKM (ENSSHAG00000002132) ##22	ENSSHAG00000002976	EXOC3L2 (ENSSHAG00000004086) ##27	ENSSHAG00000004430	TRAPPC6A (ENSSHAG00000005027)	ENSSHAG00000026930	ENSSHAG00000022537	ENSSHAG00000032027	ENSSHAG00000005287	ENSSHAG00000020840	CLASRP (ENSSHAG00000029242)	RELB (ENSSHAG00000003442)	ENSSHAG00000024210	ENSSHAG00000001301	ENSSHAG00000026510	ENSSHAG00000004670
Opossum	MODERN SPECIES	427																CKM (ENSMODG00000051059) ##22	ENSMODG00000047890	ENSMODG00000050366	EXOC3L2 (ENSMODG00000010936) ##27
Eutheria	ANCESTRAL SPECIES	29	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000011584	ENSGT00950000182929.B.b
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Tree shrew	MODERN SPECIES	5804																CKM (ENSTBEG00000000149) ##22	MARK4 (ENSTBEG00000000142)
Glires	ANCESTRAL SPECIES	6	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Rodentia	ANCESTRAL SPECIES	8	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Guinea pig	MODERN SPECIES	80	ENSCPOG00000035154	GIPR (ENSCPOG00000002438)	EML2 (ENSCPOG00000013465)	OPA3 (ENSCPOG00000035437)	VASP (ENSCPOG00000010236)	PPM1N (ENSCPOG00000034457)	RTN2 (ENSCPOG00000011382)	FOSB (ENSCPOG00000015608)	ERCC1 (ENSCPOG00000015606)	POLR1G (ENSCPOG00000033293)	ENSCPOG00000036376	PPP1R13L (ENSCPOG00000015602)	ERCC2 (ENSCPOG00000015600)	KLC3 (ENSCPOG00000015599)	ENSCPOG00000039314	CKM (ENSCPOG00000019609) ##22	MARK4 (ENSCPOG00000004117)	EXOC3L2 (ENSCPOG00000021579) ##27	ENSCPOG00000024355	ENSCPOG00000020516	BLOC1S3 (ENSCPOG00000035473)	TRAPPC6A (ENSCPOG00000015115)	NKPD1 (ENSCPOG00000026614)	PPP1R37 (ENSCPOG00000006371)	GEMIN7 (ENSCPOG00000037844)	ZNF296 (ENSCPOG00000010291)	CLASRP (ENSCPOG00000010282)	RELB (ENSCPOG00000010273)	CLPTM1 (ENSCPOG00000010264)	APOC2 (ENSCPOG00000009302)	ENSCPOG00000009300
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Long-tailed chinchilla	MODERN SPECIES	262										FOSB (ENSCLAG00000001320)	ERCC1 (ENSCLAG00000004731)	POLR1G (ENSCLAG00000004691)	PPP1R13L (ENSCLAG00000004002)	ERCC2 (ENSCLAG00000002595)	KLC3 (ENSCLAG00000002431)	CKM (ENSCLAG00000002240) ##22	MARK4 (ENSCLAG00000002104)	EXOC3L2 (ENSCLAG00000002073) ##27	ENSCLAG00000001896	BLOC1S3 (ENSCLAG00000002758)	TRAPPC6A (ENSCLAG00000002688)	NKPD1 (ENSCLAG00000002500)	PPP1R37 (ENSCLAG00000002455)	ZNF296 (ENSCLAG00000002406)	CLASRP (ENSCLAG00000002206)	RELB (ENSCLAG00000001435)	CLPTM1 (ENSCLAG00000001254)	ENSCLAG00000001239	APOC2 (ENSCLAG00000001142)	ENSCLAG00000001127	APOE (ENSCLAG00000001528)
Degu	MODERN SPECIES	238	QPCTL (ENSODEG00000012513)	ENSODEG00000008857	GIPR (ENSODEG00000010030)	EML2 (ENSODEG00000007963)	GPR4 (ENSODEG00000019587)	OPA3 (ENSODEG00000009423)	VASP (ENSODEG00000007915)	PPM1N (ENSODEG00000009338)	RTN2 (ENSODEG00000007986)	FOSB (ENSODEG00000009394)	ERCC1 (ENSODEG00000007322)	POLR1G (ENSODEG00000007587)	PPP1R13L (ENSODEG00000008375)	ERCC2 (ENSODEG00000008340)	KLC3 (ENSODEG00000009706)	CKM (ENSODEG00000008279) ##22	MARK4 (ENSODEG00000012545)	EXOC3L2 (ENSODEG00000009155) ##27	TRAPPC6A (ENSODEG00000008693)	NKPD1 (ENSODEG00000008357)	PPP1R37 (ENSODEG00000008101)	GEMIN7 (ENSODEG00000009107)	ZNF296 (ENSODEG00000008238)	CLASRP (ENSODEG00000008407)	RELB (ENSODEG00000008207)	CLPTM1 (ENSODEG00000008066)	APOC2 (ENSODEG00000008478)	ENSODEG00000011088	ENSODEG00000010383	APOE (ENSODEG00000008747)	ENSODEG00000010615
Naked mole-rat female	MODERN SPECIES	21	GPR4 (ENSHGLG00000036046)	OPA3 (ENSHGLG00000016016)	VASP (ENSHGLG00000018306)	ENSHGLG00000041051	ENSHGLG00000033452	ENSHGLG00000042028	RTN2 (ENSHGLG00000002943)	FOSB (ENSHGLG00000004044)	ERCC1 (ENSHGLG00000003045)	POLR1G (ENSHGLG00000002795)	PPP1R13L (ENSHGLG00000002359)	ERCC2 (ENSHGLG00000018685)	KLC3 (ENSHGLG00000003781)	ENSHGLG00000003471	ENSHGLG00000003316	ENSHGLG00000002629 ##22	ENSHGLG00000003636	ENSHGLG00000003068 ##27	ENSHGLG00000042272	ENSHGLG00000011476	CYP2S1 (ENSHGLG00000005323)	AXL (ENSHGLG00000018919)	HNRNPUL1 (ENSHGLG00000007171)	CCDC97 (ENSHGLG00000035865)	TGFB1 (ENSHGLG00000007211)	B9D2 (ENSHGLG00000005896)	TMEM91 (ENSHGLG00000036227)	EXOSC5 (ENSHGLG00000008975)	BCKDHA (ENSHGLG00000050952)	B3GNT8 (ENSHGLG00000010364)	ERICH4 (ENSHGLG00000048703)
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C.t	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Marmotini	ANCESTRAL SPECIES	7	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C.t	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Marmotini_b	ANCESTRAL SPECIES	49	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C.t	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Squirrel	MODERN SPECIES	306	QPCTL (ENSSTOG00000013895)	SNRPD2 (ENSSTOG00000024377)	GIPR (ENSSTOG00000028727)	EML2 (ENSSTOG00000013316)	GPR4 (ENSSTOG00000022015)	OPA3 (ENSSTOG00000029170)	VASP (ENSSTOG00000027705)	PPM1N (ENSSTOG00000002827)	RTN2 (ENSSTOG00000002816)	FOSB (ENSSTOG00000028949)	ERCC1 (ENSSTOG00000002805)	POLR1G (ENSSTOG00000002799)	PPP1R13L (ENSSTOG00000001130)	ERCC2 (ENSSTOG00000001106)	KLC3 (ENSSTOG00000020494)	CKM (ENSSTOG00000011537) ##22	MARK4 (ENSSTOG00000011531)	ENSSTOG00000011523 ##27	TRAPPC6A (ENSSTOG00000009152)	BLOC1S3 (ENSSTOG00000033740)	NKPD1 (ENSSTOG00000027698)	PPP1R37 (ENSSTOG00000025282)	GEMIN7 (ENSSTOG00000033006)	ZNF296 (ENSSTOG00000023578)	CLASRP (ENSSTOG00000009069)	RELB (ENSSTOG00000009056)	ENSSTOG00000032770	CLPTM1 (ENSSTOG00000009031)	ENSSTOG00000009019	NECTIN2 (ENSSTOG00000008997)	BCAM (ENSSTOG00000021794)
Arctic ground squirrel	MODERN SPECIES	297	QPCTL (ENSUPAG00010021602)	SNRPD2 (ENSUPAG00010021605)	GIPR (ENSUPAG00010021609)	EML2 (ENSUPAG00010021623)	GPR4 (ENSUPAG00010021640)	OPA3 (ENSUPAG00010021642)	VASP (ENSUPAG00010021647)	PPM1N (ENSUPAG00010021657)	RTN2 (ENSUPAG00010021664)	FOSB (ENSUPAG00010021666)	ERCC1 (ENSUPAG00010021686)	POLR1G (ENSUPAG00010021691)	PPP1R13L (ENSUPAG00010021693)	ERCC2 (ENSUPAG00010021698)	KLC3 (ENSUPAG00010021708)	CKM (ENSUPAG00010021720) ##22	MARK4 (ENSUPAG00010021726)	EXOC3L2 (ENSUPAG00010021737) ##27	BLOC1S3 (ENSUPAG00010021749)	TRAPPC6A (ENSUPAG00010021751)	NKPD1 (ENSUPAG00010021755)	PPP1R37 (ENSUPAG00010021758)	GEMIN7 (ENSUPAG00010021768)	ZNF296 (ENSUPAG00010021770)	CLASRP (ENSUPAG00010021771)	RELB (ENSUPAG00010021774)	CLPTM1 (ENSUPAG00010021781)	ENSUPAG00010021782	ENSUPAG00010021784	APOC1 (ENSUPAG00010021785)	APOE (ENSUPAG00010021788)
Alpin marmot	MODERN SPECIES	45	QPCTL (ENSMMMG00000014131)	ENSMMMG00000014144	GIPR (ENSMMMG00000014147)	EML2 (ENSMMMG00000014164)	GPR4 (ENSMMMG00000014230)	OPA3 (ENSMMMG00000014232)	VASP (ENSMMMG00000014235)	ENSMMMG00000014265	RTN2 (ENSMMMG00000014268)	FOSB (ENSMMMG00000014298)	ERCC1 (ENSMMMG00000014315)	POLR1G (ENSMMMG00000014326)	ENSMMMG00000014331	ERCC2 (ENSMMMG00000014338)	KLC3 (ENSMMMG00000014476)	CKM (ENSMMMG00000014494) ##22	MARK4 (ENSMMMG00000014510)	ENSMMMG00000014559	BLOC1S3 (ENSMMMG00000014569)	TRAPPC6A (ENSMMMG00000014570)	PPP1R37 (ENSMMMG00000014623)	GEMIN7 (ENSMMMG00000014641)	ZNF296 (ENSMMMG00000014656)	CLASRP (ENSMMMG00000014675)	ENSMMMG00000014707	CLPTM1 (ENSMMMG00000014731)	ENSMMMG00000014736	APOC1 (ENSMMMG00000014747)	ENSMMMG00000014754	TOMM40 (ENSMMMG00000014766)	NECTIN2 (ENSMMMG00000014773)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005023631	GIPR (ENSSVLG00005023358)	EML2 (ENSSVLG00005023025)	GPR4 (ENSSVLG00005022943)	OPA3 (ENSSVLG00005022913)	VASP (ENSSVLG00005022815)	PPM1N (ENSSVLG00005022665)	RTN2 (ENSSVLG00005022524)	FOSB (ENSSVLG00005022289)	ERCC1 (ENSSVLG00005022100)	POLR1G (ENSSVLG00005022037)	PPP1R13L (ENSSVLG00005021997)	ERCC2 (ENSSVLG00005021679)	KLC3 (ENSSVLG00005021449)	ENSSVLG00005021426	CKM (ENSSVLG00005021360) ##22	ENSSVLG00005021273	EXOC3L2 (ENSSVLG00005021070) ##27	BLOC1S3 (ENSSVLG00005021043)	TRAPPC6A (ENSSVLG00005020976)	NKPD1 (ENSSVLG00005020950)	PPP1R37 (ENSSVLG00005020898)	GEMIN7 (ENSSVLG00005020878)	ZNF296 (ENSSVLG00005020812)	CLASRP (ENSSVLG00005020689)	RELB (ENSSVLG00005020581)	CLPTM1 (ENSSVLG00005020445)	APOC2 (ENSSVLG00005020338)	ENSSVLG00005020271	ENSSVLG00005020178	APOE (ENSSVLG00005020139)
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Muroidea	ANCESTRAL SPECIES	18	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Cricetidae	ANCESTRAL SPECIES	29	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Cricetinae	ANCESTRAL SPECIES	42	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Chinese hamster chok1gshd	MODERN SPECIES	328	Fbxo46 (ENSCGRG00001014313)	Qpctl (ENSCGRG00001000786)	Gipr (ENSCGRG00001000434)	Eml2 (ENSCGRG00001001692)	Gpr4 (ENSCGRG00001013541)	Opa3 (ENSCGRG00001016230)	Vasp (ENSCGRG00001008576)	Ppm1n (ENSCGRG00001001627)	Rtn2 (ENSCGRG00001023308)	Fosb (ENSCGRG00001009723)	Ercc1 (ENSCGRG00001000712)	Polr1g (ENSCGRG00001023584)	Ppp1r13l (ENSCGRG00001020832)	Ercc2 (ENSCGRG00001013953)	Klc3 (ENSCGRG00001022712)	Ckm (ENSCGRG00001017465) ##22	Mark4 (ENSCGRG00001017090)	ENSCGRG00001015530	Bloc1s3 (ENSCGRG00001015521)	Trappc6a (ENSCGRG00001002017)	Nkpd1 (ENSCGRG00001019267)	Ppp1r37 (ENSCGRG00001000178)	Gemin7 (ENSCGRG00001013306)	Zfp296 (ENSCGRG00001015680)	Clasrp (ENSCGRG00001015861)	Relb (ENSCGRG00001007750)	Clptm1 (ENSCGRG00001010928)	Apoc2 (ENSCGRG00001005778)	Apoc4 (ENSCGRG00001017401)	Apoc1 (ENSCGRG00001017299)	Apoe (ENSCGRG00001017152)
Golden Hamster	MODERN SPECIES	834	Fbxo46 (ENSMAUG00000019697)	Qpctl (ENSMAUG00000014498)	Snrpd2 (ENSMAUG00000018849)	Gipr (ENSMAUG00000021032)	Eml2 (ENSMAUG00000016205)	Opa3 (ENSMAUG00000015768)	Vasp (ENSMAUG00000018921)	Ppm1n (ENSMAUG00000011353)	ENSMAUG00000018994	Fosb (ENSMAUG00000000999)	Ercc1 (ENSMAUG00000014855)	Polr1g (ENSMAUG00000007876)	Ppp1r13l (ENSMAUG00000020292)	Ercc2 (ENSMAUG00000000724)	Klc3 (ENSMAUG00000017859)	Ckm (ENSMAUG00000009932) ##22	ENSMAUG00000020514	Mark4 (ENSMAUG00000009989)	Exoc3l2 (ENSMAUG00000019204) ##27	Bloc1s3 (ENSMAUG00000014366)	Trappc6a (ENSMAUG00000017280)	Nkpd1 (ENSMAUG00000006604)	Ppp1r37 (ENSMAUG00000008592)	Gemin7 (ENSMAUG00000018897)	Zfp296 (ENSMAUG00000019561)	Clasrp (ENSMAUG00000000378)	ENSMAUG00000017092	Clptm1 (ENSMAUG00000004399)	Apoc2 (ENSMAUG00000014292)	Apoc4 (ENSMAUG00000019705)	Apoc1 (ENSMAUG00000020478)
Cricetidae_B	ANCESTRAL SPECIES	41	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Prairie vole	MODERN SPECIES	157	Qpctl (ENSMOCG00000015780)	Snrpd2 (ENSMOCG00000017080)	Gipr (ENSMOCG00000015992)	Eml2 (ENSMOCG00000013139)	Gpr4 (ENSMOCG00000001007)	Opa3 (ENSMOCG00000013947)	Vasp (ENSMOCG00000001451)	Ppm1n (ENSMOCG00000011572)	ENSMOCG00000018978	Fosb (ENSMOCG00000001596)	Ercc1 (ENSMOCG00000012206)	Polr1g (ENSMOCG00000013766)	Ppp1r13l (ENSMOCG00000001158)	Ercc2 (ENSMOCG00000013611)	Klc3 (ENSMOCG00000003970)	Ckm (ENSMOCG00000020442) ##22	Mark4 (ENSMOCG00000006161)	Exoc3l2 (ENSMOCG00000003076) ##27	Bloc1s3 (ENSMOCG00000000204)	Trappc6a (ENSMOCG00000013206)	Nkpd1 (ENSMOCG00000000052)	Ppp1r37 (ENSMOCG00000009307)	Gemin7 (ENSMOCG00000019633)	Zfp296 (ENSMOCG00000000338)	Clasrp (ENSMOCG00000007548)	Relb (ENSMOCG00000003754)	Clptm1 (ENSMOCG00000015665)	Apoc2 (ENSMOCG00000010632)	Apoc4 (ENSMOCG00000015539)	Apoc1 (ENSMOCG00000010879)	Apoe (ENSMOCG00000001633)
Northern American deer mouse	MODERN SPECIES		Snrpd2 (ENSPEMG00000004117)	Gipr (ENSPEMG00000014106)	Eml2 (ENSPEMG00000008721)	Gpr4 (ENSPEMG00000000584)	Opa3 (ENSPEMG00000024608)	Vasp (ENSPEMG00000001352)	Ppm1n (ENSPEMG00000014264)	Rtn2 (ENSPEMG00000012056)	Fosb (ENSPEMG00000016150)	Ercc1 (ENSPEMG00000000638)	Polr1g (ENSPEMG00000018578)	Ppp1r13l (ENSPEMG00000007393)	Ercc2 (ENSPEMG00000008225)	Klc3 (ENSPEMG00000014005)	ENSPEMG00000019188	Ckm (ENSPEMG00000013369) ##22	Mark4 (ENSPEMG00000013793)	Exoc3l2 (ENSPEMG00000016910) ##27	Trappc6a (ENSPEMG00000018919)	Nkpd1 (ENSPEMG00000010558)	Ppp1r37 (ENSPEMG00000001005)	Gemin7 (ENSPEMG00000003653)	Zfp296 (ENSPEMG00000008067)	Clasrp (ENSPEMG00000017845)	Relb (ENSPEMG00000017792)	Clptm1 (ENSPEMG00000000759)	Apoc2 (ENSPEMG00000017266)	Apoc4 (ENSPEMG00000008327)	ENSPEMG00000010767	Apoe (ENSPEMG00000011447)	Tomm40 (ENSPEMG00000018119)
Murinae	ANCESTRAL SPECIES	19	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mus	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mus_B	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mouse	MODERN SPECIES	16	Qpctl (ENSMUSG00000030407)	Snrpd2 (ENSMUSG00000040824)	Gipr (ENSMUSG00000030406)	Eml2 (ENSMUSG00000040811)	Gpr4 (ENSMUSG00000044317)	Opa3 (ENSMUSG00000052214)	Vasp (ENSMUSG00000030403)	Ppm1n (ENSMUSG00000030402)	Rtn2 (ENSMUSG00000030401)	Fosb (ENSMUSG00000003545)	Ercc1 (ENSMUSG00000003549)	Polr1g (ENSMUSG00000047649)	Ppp1r13l (ENSMUSG00000040734)	Ercc2 (ENSMUSG00000030400)	Klc3 (ENSMUSG00000040714)	Ckm (ENSMUSG00000030399) ##22	Mark4 (ENSMUSG00000030397)	Exoc3l2 (ENSMUSG00000011263) ##27	Bloc1s3 (ENSMUSG00000057667)	Trappc6a (ENSMUSG00000002043)	Nkpd1 (ENSMUSG00000060621)	Ppp1r37 (ENSMUSG00000051403)	Gemin7 (ENSMUSG00000044709)	Zfp296 (ENSMUSG00000011267)	Clasrp (ENSMUSG00000061028)	Relb (ENSMUSG00000002983)	Clptm1 (ENSMUSG00000002981)	Apoc2 (ENSMUSG00000002992)	Apoc2l (ENSMUSG00000109350)	Apoc4 (ENSMUSG00000074336)	Apoc1 (ENSMUSG00000040564)
Mus_C	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b.qb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
spretus	MODERN SPECIES	16	Qpctl (MGP_SPRETEiJ_G0030358)	MGP_SPRETEiJ_G0030359	Gipr (MGP_SPRETEiJ_G0030360)	Eml2 (MGP_SPRETEiJ_G0030361)	Gpr4 (MGP_SPRETEiJ_G0030362)	Opa3 (MGP_SPRETEiJ_G0030363)	Vasp (MGP_SPRETEiJ_G0030364)	Ppm1n (MGP_SPRETEiJ_G0030365)	Rtn2 (MGP_SPRETEiJ_G0030366)	Fosb (MGP_SPRETEiJ_G0030367)	Ercc1 (MGP_SPRETEiJ_G0030368)	Polr1g (MGP_SPRETEiJ_G0030369)	Ppp1r13l (MGP_SPRETEiJ_G0030370)	Ercc2 (MGP_SPRETEiJ_G0030371)	Klc3 (MGP_SPRETEiJ_G0030372)	Ckm (MGP_SPRETEiJ_G0030373) ##22	MGP_SPRETEiJ_G0030374	Mark4 (MGP_SPRETEiJ_G0030375)	Exoc3l2 (MGP_SPRETEiJ_G0030376) ##27	Bloc1s3 (MGP_SPRETEiJ_G0030377)	Trappc6a (MGP_SPRETEiJ_G0030378)	Nkpd1 (MGP_SPRETEiJ_G0030379)	Ppp1r37 (MGP_SPRETEiJ_G0030380)	Gemin7 (MGP_SPRETEiJ_G0030381)	Zfp296 (MGP_SPRETEiJ_G0030382)	Clasrp (MGP_SPRETEiJ_G0030383)	Relb (MGP_SPRETEiJ_G0030384)	Clptm1 (MGP_SPRETEiJ_G0030385)	Apoc2 (MGP_SPRETEiJ_G0030386)	Apoc4 (MGP_SPRETEiJ_G0030387)	Apoc1 (MGP_SPRETEiJ_G0030388)
Steppe mouse	MODERN SPECIES	2900	Qpctl (ENSMSIG00000005068)	Snrpd2 (ENSMSIG00000005096)	Gipr (ENSMSIG00000005108)	Eml2 (ENSMSIG00000005175)	Gpr4 (ENSMSIG00000005462)	Opa3 (ENSMSIG00000005466)	Vasp (ENSMSIG00000005496)	Ppm1n (ENSMSIG00000005528)	Rtn2 (ENSMSIG00000005554)	Fosb (ENSMSIG00000005600)	Ercc1 (ENSMSIG00000005763)	Polr1g (ENSMSIG00000005787)	Ppp1r13l (ENSMSIG00000005801)	Ercc2 (ENSMSIG00000005841)	Klc3 (ENSMSIG00000006063)	Ckm (ENSMSIG00000006180) ##22	Mark4 (ENSMSIG00000006221)	Exoc3l2 (ENSMSIG00000006372) ##27	Bloc1s3 (ENSMSIG00000006464)	ENSMSIG00000006473	Nkpd1 (ENSMSIG00000006532)	Ppp1r37 (ENSMSIG00000006586)	Gemin7 (ENSMSIG00000006656)	Zfp296 (ENSMSIG00000006673)	Clasrp (ENSMSIG00000006696)	Relb (ENSMSIG00000006878)	Clptm1 (ENSMSIG00000007105)	Apoc2 (ENSMSIG00000007132)	Apoc4 (ENSMSIG00000007155)	Apoc1 (ENSMSIG00000007168)	Apoe (ENSMSIG00000007187)
Ryukyu mouse	MODERN SPECIES	16	Qpctl (MGP_CAROLIEiJ_G0029274)	Snrpd2 (MGP_CAROLIEiJ_G0029275)	Gipr (MGP_CAROLIEiJ_G0029276)	Eml2 (MGP_CAROLIEiJ_G0029277)	Gpr4 (MGP_CAROLIEiJ_G0029278)	Opa3 (MGP_CAROLIEiJ_G0029279)	Vasp (MGP_CAROLIEiJ_G0029280)	Ppm1n (MGP_CAROLIEiJ_G0029281)	Rtn2 (MGP_CAROLIEiJ_G0029282)	Fosb (MGP_CAROLIEiJ_G0029283)	Ercc1 (MGP_CAROLIEiJ_G0029284)	Polr1g (MGP_CAROLIEiJ_G0029285)	Ppp1r13l (MGP_CAROLIEiJ_G0029286)	Ercc2 (MGP_CAROLIEiJ_G0029287)	Klc3 (MGP_CAROLIEiJ_G0029288)	Ckm (MGP_CAROLIEiJ_G0029289) ##22	MGP_CAROLIEiJ_G0029290	Mark4 (MGP_CAROLIEiJ_G0029291)	Exoc3l2 (MGP_CAROLIEiJ_G0029292) ##27	Bloc1s3 (MGP_CAROLIEiJ_G0029293)	MGP_CAROLIEiJ_G0029294	Nkpd1 (MGP_CAROLIEiJ_G0029295)	Ppp1r37 (MGP_CAROLIEiJ_G0029296)	Gemin7 (MGP_CAROLIEiJ_G0029297)	Zfp296 (MGP_CAROLIEiJ_G0029298)	Clasrp (MGP_CAROLIEiJ_G0029299)	Relb (MGP_CAROLIEiJ_G0029300)	Clptm1 (MGP_CAROLIEiJ_G0029301)	Apoc2 (MGP_CAROLIEiJ_G0029302)	Apoc4 (MGP_CAROLIEiJ_G0029303)	Apoc1 (MGP_CAROLIEiJ_G0029304)
Shrew mouse	MODERN SPECIES	10	Fbxo46 (MGP_PahariEiJ_G0021133)	Qpctl (MGP_PahariEiJ_G0021134)	Snrpd2 (MGP_PahariEiJ_G0021135)	Gipr (MGP_PahariEiJ_G0021136)	Eml2 (MGP_PahariEiJ_G0021137)	Gpr4 (MGP_PahariEiJ_G0021138)	Opa3 (MGP_PahariEiJ_G0021139)	Vasp (MGP_PahariEiJ_G0021140)	Ppm1n (MGP_PahariEiJ_G0021141)	Rtn2 (MGP_PahariEiJ_G0021142)	Fosb (MGP_PahariEiJ_G0021143)	Ercc1 (MGP_PahariEiJ_G0021144)	Ppp1r13l (MGP_PahariEiJ_G0021146)	Ercc2 (MGP_PahariEiJ_G0021147)	Klc3 (MGP_PahariEiJ_G0021148)	Ckm (MGP_PahariEiJ_G0021149) ##22	MGP_PahariEiJ_G0021150	Mark4 (MGP_PahariEiJ_G0021151)	Exoc3l2 (MGP_PahariEiJ_G0021152) ##27	Bloc1s3 (MGP_PahariEiJ_G0021153)	MGP_PahariEiJ_G0021154	Nkpd1 (MGP_PahariEiJ_G0021155)	Ppp1r37 (MGP_PahariEiJ_G0021156)	Gemin7 (MGP_PahariEiJ_G0021157)	Zfp296 (MGP_PahariEiJ_G0021158)	Clasrp (MGP_PahariEiJ_G0021159)	Relb (MGP_PahariEiJ_G0021160)	Clptm1 (MGP_PahariEiJ_G0021161)	MGP_PahariEiJ_G0021162	Apoc4 (MGP_PahariEiJ_G0021163)	Apoc1 (MGP_PahariEiJ_G0021164)
Rat	MODERN SPECIES		Snrpd2 (ENSRNOG00000015844)	Gipr (ENSRNOG00000015860)	Eml2 (ENSRNOG00000030127)	Gpr4 (ENSRNOG00000016362)	Opa3 (ENSRNOG00000025890)	Opa3 (ENSRNOG00000064373)	Vasp (ENSRNOG00000016367)	Ppm1n (ENSRNOG00000058133)	Rtn2 (ENSRNOG00000016603)	Fosb (ENSRNOG00000046667)	Ercc1 (ENSRNOG00000017839)	Polr1g (ENSRNOG00000016825)	Ppp1r13l (ENSRNOG00000025350)	Ercc2 (ENSRNOG00000017753)	Klc3 (ENSRNOG00000018101)	Ckm (ENSRNOG00000016837) ##22	Mark4 (ENSRNOG00000017069)	Exoc3l2 (ENSRNOG00000017448) ##27	Bloc1s3 (ENSRNOG00000017463)	Trappc6a (ENSRNOG00000017468)	Nkpd1 (ENSRNOG00000043378)	Ppp1r37 (ENSRNOG00000017692)	Gemin7 (ENSRNOG00000049772)	Zfp296 (ENSRNOG00000049605)	Clasrp (ENSRNOG00000046000)	Relb (ENSRNOG00000033235)	Clptm1 (ENSRNOG00000018255)	Apoc2 (ENSRNOG00000018402)	Apoc4 (ENSRNOG00000018405)	Apoc1 (ENSRNOG00000018426)	Apoe (ENSRNOG00000018454)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1616	Fbxo46 (ENSNGAG00000017717)	Qpctl (ENSNGAG00000012368)	ENSNGAG00000010411	Gipr (ENSNGAG00000014088)	Eml2 (ENSNGAG00000016674)	Gpr4 (ENSNGAG00000009194)	Opa3 (ENSNGAG00000015660)	Vasp (ENSNGAG00000012981)	Rtn2 (ENSNGAG00000001176)	Fosb (ENSNGAG00000020712)	Ercc1 (ENSNGAG00000018219)	Polr1g (ENSNGAG00000015313)	Ppp1r13l (ENSNGAG00000000621)	Ercc2 (ENSNGAG00000017688)	Klc3 (ENSNGAG00000007710)	Ckm (ENSNGAG00000000066) ##22	Mark4 (ENSNGAG00000012653)	Exoc3l2 (ENSNGAG00000020966) ##27	Bloc1s3 (ENSNGAG00000013200)	Trappc6a (ENSNGAG00000018159)	Nkpd1 (ENSNGAG00000015014)	Ppp1r37 (ENSNGAG00000010843)	Gemin7 (ENSNGAG00000018443)	Zfp296 (ENSNGAG00000010996)	Clasrp (ENSNGAG00000016249)	ENSNGAG00000012950	Clptm1 (ENSNGAG00000003363)	ENSNGAG00000000307	Apoc2 (ENSNGAG00000019759)	Apoc4 (ENSNGAG00000015603)	Apoc1 (ENSNGAG00000019714)
Lesser Egyptian jerboa	MODERN SPECIES	186	Apoc2 (ENSJJAG00000017546)	Clptm1 (ENSJJAG00000017147)	Relb (ENSJJAG00000016298)	ENSJJAG00000016124	Zfp296 (ENSJJAG00000015875)	Ppp1r37 (ENSJJAG00000015339)	ENSJJAG00000014876	Nkpd1 (ENSJJAG00000014468)	ENSJJAG00000014225	Fosb (ENSJJAG00000013651)	ENSJJAG00000013425	Polr1g (ENSJJAG00000013173)	Ppp1r13l (ENSJJAG00000011946)	Ercc2 (ENSJJAG00000006595)	Klc3 (ENSJJAG00000022201)	Ckm (ENSJJAG00000021725) ##22	Mark4 (ENSJJAG00000021555)
Kangaroo rat	MODERN SPECIES	475	Six5 (ENSDORG00000026570)	Fbxo46 (ENSDORG00000029689)	Qpctl (ENSDORG00000001733)	Gipr (ENSDORG00000001717)	Eml2 (ENSDORG00000008122)	Opa3 (ENSDORG00000024215)	Vasp (ENSDORG00000008121)	Ppm1n (ENSDORG00000008119)	Rtn2 (ENSDORG00000008114)	Fosb (ENSDORG00000008112)	Ercc1 (ENSDORG00000007999)	ENSDORG00000027052	Ppp1r13l (ENSDORG00000008001)	Ercc2 (ENSDORG00000008002)	Klc3 (ENSDORG00000008004)	Ckm (ENSDORG00000013288) ##22	ENSDORG00000023785	Mark4 (ENSDORG00000013282)	Exoc3l2 (ENSDORG00000009068) ##27	Trappc6a (ENSDORG00000003457)	Nkpd1 (ENSDORG00000027401)	Ppp1r37 (ENSDORG00000003452)	Zfp296 (ENSDORG00000003451)	Clasrp (ENSDORG00000003450)	Gemin7 (ENSDORG00000027339)	Relb (ENSDORG00000003448)	Clptm1 (ENSDORG00000003446)	Apoc2 (ENSDORG00000027051)	Apoc4 (ENSDORG00000016144)	Apoc1 (ENSDORG00000003582)	Apoe (ENSDORG00000003581)
Lagomorpha	ANCESTRAL SPECIES	178		ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00980000200098	ENSGT00450000040362	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Rabbit	MODERN SPECIES	736			QPCTL (ENSOCUG00000016066)	SNRPD2 (ENSOCUG00000022402)	GIPR (ENSOCUG00000011885)	EML2 (ENSOCUG00000021801)	GPR4 (ENSOCUG00000037302)	OPA3 (ENSOCUG00000007949)	ENSOCUG00000026899	PPM1N (ENSOCUG00000024100)	RTN2 (ENSOCUG00000023342)	FOSB (ENSOCUG00000023019)	ENSOCUG00000024047	ENSOCUG00000025376	ERCC2 (ENSOCUG00000025269)	CKM (ENSOCUG00000027154) ##22	ENSOCUG00000024723
Primates	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00960000192363	ENSGT00950000182929.B.b
Coquerels sifaka	MODERN SPECIES	568	QPCTL (ENSPCOG00000018844)	SNRPD2 (ENSPCOG00000028811)	GIPR (ENSPCOG00000021969)	EML2 (ENSPCOG00000018079)	GPR4 (ENSPCOG00000000191)	OPA3 (ENSPCOG00000017860)	VASP (ENSPCOG00000013513)	PPM1N (ENSPCOG00000022242)	RTN2 (ENSPCOG00000004285)	FOSB (ENSPCOG00000008886)	ERCC1 (ENSPCOG00000028786)	POLR1G (ENSPCOG00000028780)	PPP1R13L (ENSPCOG00000022581)	ERCC2 (ENSPCOG00000016671)	KLC3 (ENSPCOG00000019370)	CKM (ENSPCOG00000025111) ##22	MARK4 (ENSPCOG00000027851)	EXOC3L2 (ENSPCOG00000017537) ##27	TRAPPC6A (ENSPCOG00000022562)	NKPD1 (ENSPCOG00000020220)	PPP1R37 (ENSPCOG00000021765)	ZNF296 (ENSPCOG00000017587)	CLASRP (ENSPCOG00000018016)	RELB (ENSPCOG00000013127)	CLPTM1 (ENSPCOG00000022928)	APOC2 (ENSPCOG00000026300)	APOC4 (ENSPCOG00000019360)	ENSPCOG00000017937	APOE (ENSPCOG00000016579)	TOMM40 (ENSPCOG00000015079)	NECTIN2 (ENSPCOG00000020498)
Greater bamboo lemur	MODERN SPECIES	79	QPCTL (ENSPSMG00000024775)	ENSPSMG00000024780	GIPR (ENSPSMG00000024806)	EML2 (ENSPSMG00000024861)	GPR4 (ENSPSMG00000024886)	OPA3 (ENSPSMG00000024888)	VASP (ENSPSMG00000024889)	PPM1N (ENSPSMG00000024901)	RTN2 (ENSPSMG00000024946)	FOSB (ENSPSMG00000024967)	ERCC1 (ENSPSMG00000024982)	POLR1G (ENSPSMG00000024991)	PPP1R13L (ENSPSMG00000025002)	ERCC2 (ENSPSMG00000025033)	KLC3 (ENSPSMG00000025052)	CKM (ENSPSMG00000025058) ##22	MARK4 (ENSPSMG00000025099)	EXOC3L2 (ENSPSMG00000025111) ##27	TRAPPC6A (ENSPSMG00000025115)	BLOC1S3 (ENSPSMG00000025117)	NKPD1 (ENSPSMG00000025121)	PPP1R37 (ENSPSMG00000025125)	ENSPSMG00000025129	ZNF296 (ENSPSMG00000025135)	CLASRP (ENSPSMG00000025177)	RELB (ENSPSMG00000025196)	CLPTM1 (ENSPSMG00000025217)	APOC2 (ENSPSMG00000025228)	APOC4 (ENSPSMG00000025229)	ENSPSMG00000025234	APOE (ENSPSMG00000025250)
Mouse lemur	MODERN SPECIES	14	QPCTL (ENSMICG00000001842)	SNRPD2 (ENSMICG00000031545)	GIPR (ENSMICG00000001830)	EML2 (ENSMICG00000001822)	GPR4 (ENSMICG00000046993)	OPA3 (ENSMICG00000046590)	VASP (ENSMICG00000044750)	PPM1N (ENSMICG00000029291)	RTN2 (ENSMICG00000003139)	FOSB (ENSMICG00000001809)	ERCC1 (ENSMICG00000001806)	POLR1G (ENSMICG00000031258)	PPP1R13L (ENSMICG00000001794)	ERCC2 (ENSMICG00000000635)	KLC3 (ENSMICG00000000630)	CKM (ENSMICG00000000625) ##22	MARK4 (ENSMICG00000000621)	EXOC3L2 (ENSMICG00000031664) ##27	TRAPPC6A (ENSMICG00000002475)	NKPD1 (ENSMICG00000030601)	PPP1R37 (ENSMICG00000007018)	ZNF296 (ENSMICG00000007012)	CLASRP (ENSMICG00000006996)	RELB (ENSMICG00000006991)	CLPTM1 (ENSMICG00000006981)	APOC2 (ENSMICG00000030597)	APOC4 (ENSMICG00000034209)	ENSMICG00000045015	APOE (ENSMICG00000031968)	TOMM40 (ENSMICG00000014041)	NECTIN2 (ENSMICG00000014030)
Bushbaby	MODERN SPECIES	267	QPCTL (ENSOGAG00000003952)	SNRPD2 (ENSOGAG00000030128)	GIPR (ENSOGAG00000012568)	EML2 (ENSOGAG00000033974)	GPR4 (ENSOGAG00000029132)	OPA3 (ENSOGAG00000033310)	VASP (ENSOGAG00000011276)	PPM1N (ENSOGAG00000033341)	RTN2 (ENSOGAG00000033252)	FOSB (ENSOGAG00000013790)	ERCC1 (ENSOGAG00000030471)	POLR1G (ENSOGAG00000013782)	PPP1R13L (ENSOGAG00000013774)	ERCC2 (ENSOGAG00000007834)	KLC3 (ENSOGAG00000027807)	CKM (ENSOGAG00000007832) ##22	MARK4 (ENSOGAG00000011279)	ENSOGAG00000002937 ##27	TRAPPC6A (ENSOGAG00000033611)	NKPD1 (ENSOGAG00000032471)	PPP1R37 (ENSOGAG00000027337)	GEMIN7 (ENSOGAG00000014987)	ENSOGAG00000025116	CLASRP (ENSOGAG00000034160)	RELB (ENSOGAG00000012777)	CLPTM1 (ENSOGAG00000012773)	APOC4 (ENSOGAG00000012770)	APOC1 (ENSOGAG00000028159)	APOE (ENSOGAG00000016031)	ENSOGAG00000012769	NECTIN2 (ENSOGAG00000012765)
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Tarsier	MODERN SPECIES	1118											PTHLH (ENSTSYG00000007775)	KLHL42 (ENSTSYG00000003823)	MANSC4 (ENSTSYG00000003843)	MRPS35 (ENSTSYG00000003293)	PPFIBP1 (ENSTSYG00000010809)	CKM (ENSTSYG00000027885) ##22	MARK4 (ENSTSYG00000034683)
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Cebidae	ANCESTRAL SPECIES	8	ENSGT00390000003107.b	ENSGT00390000017608.b.nb.d	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765.k	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00390000017608.b.nb.c.b	ENSGT00390000017608.b.nb.d	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765.k	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Capuchin	MODERN SPECIES	296	QPCTL (ENSCCAG00000006394)	SNRPD2 (ENSCCAG00000035396)	GIPR (ENSCCAG00000026591)	EML2 (ENSCCAG00000030345)	GPR4 (ENSCCAG00000014726)	OPA3 (ENSCCAG00000027564)	ENSCCAG00000029400	PPM1N (ENSCCAG00000033653)	RTN2 (ENSCCAG00000029809)	FOSB (ENSCCAG00000025333)	ERCC1 (ENSCCAG00000019653)	POLR1G (ENSCCAG00000024253)	PPP1R13L (ENSCCAG00000033595)	ERCC2 (ENSCCAG00000019831)	KLC3 (ENSCCAG00000023117)	CKM (ENSCCAG00000021924) ##22	MARK4 (ENSCCAG00000032781)	EXOC3L2 (ENSCCAG00000019683) ##27	BLOC1S3 (ENSCCAG00000002868)	TRAPPC6A (ENSCCAG00000034136)	NKPD1 (ENSCCAG00000028944)	PPP1R37 (ENSCCAG00000037362)	ZNF296 (ENSCCAG00000007856)	CLASRP (ENSCCAG00000029385)	RELB (ENSCCAG00000026037)	CLPTM1 (ENSCCAG00000032526)	APOC2 (ENSCCAG00000024617)	APOC4 (ENSCCAG00000022993)	ENSCCAG00000037884	APOE (ENSCCAG00000017371)	TOMM40 (ENSCCAG00000034572)
Bolivian squirrel monkey	MODERN SPECIES	169	FBXO46 (ENSSBOG00000016576)	ENSSBOG00000035164	GIPR (ENSSBOG00000023899)	EML2 (ENSSBOG00000022777)	GPR4 (ENSSBOG00000019451)	OPA3 (ENSSBOG00000030278)	ENSSBOG00000025296	PPM1N (ENSSBOG00000035628)	RTN2 (ENSSBOG00000029177)	FOSB (ENSSBOG00000001761)	ERCC1 (ENSSBOG00000035042)	POLR1G (ENSSBOG00000032782)	ENSSBOG00000032923	ERCC2 (ENSSBOG00000030257)	KLC3 (ENSSBOG00000033253)	CKM (ENSSBOG00000030517) ##22	MARK4 (ENSSBOG00000020814)	ENSSBOG00000024944 ##27	ENSSBOG00000032180	TRAPPC6A (ENSSBOG00000029896)	NKPD1 (ENSSBOG00000001197)	PPP1R37 (ENSSBOG00000018944)	ZNF296 (ENSSBOG00000022159)	ENSSBOG00000029935	RELB (ENSSBOG00000032389)	CLPTM1 (ENSSBOG00000033277)	APOC2 (ENSSBOG00000034451)	APOC4 (ENSSBOG00000020365)	ENSSBOG00000035185	APOE (ENSSBOG00000033993)	ENSSBOG00000028680
Marmoset	MODERN SPECIES	14	QPCTL (ENSCJAG00000082509)	ENSCJAG00000019291	GIPR (ENSCJAG00000012422)	EML2 (ENSCJAG00000012469)	GPR4 (ENSCJAG00000047762)	OPA3 (ENSCJAG00000045305)	ENSCJAG00000012536	PPM1N (ENSCJAG00000012560)	RTN2 (ENSCJAG00000012569)	FOSB (ENSCJAG00000012636)	ERCC1 (ENSCJAG00000038856)	POLR1G (ENSCJAG00000012689)	PPP1R13L (ENSCJAG00000012693)	ERCC2 (ENSCJAG00000012716)	KLC3 (ENSCJAG00000012757)	CKM (ENSCJAG00000045755) ##22	MARK4 (ENSCJAG00000012801)	EXOC3L2 (ENSCJAG00000012854) ##27	BLOC1S3 (ENSCJAG00000012780)	TRAPPC6A (ENSCJAG00000012869)	NKPD1 (ENSCJAG00000012882)	PPP1R37 (ENSCJAG00000012886)	ENSCJAG00000085678	ZNF296 (ENSCJAG00000012912)	CLASRP (ENSCJAG00000012926)	RELB (ENSCJAG00000012991)	CLPTM1 (ENSCJAG00000013016)	ENSCJAG00000070240	ENSCJAG00000078941	APOE (ENSCJAG00000084338)	TOMM40 (ENSCJAG00000013072)
Mas night monkey	MODERN SPECIES	1284	QPCTL (ENSANAG00000035587)	ENSANAG00000019777	GIPR (ENSANAG00000033440)	ENSANAG00000029331	GPR4 (ENSANAG00000019611)	OPA3 (ENSANAG00000023653)	ENSANAG00000034983	PPM1N (ENSANAG00000022999)	RTN2 (ENSANAG00000032309)	FOSB (ENSANAG00000035322)	ERCC1 (ENSANAG00000029523)	POLR1G (ENSANAG00000022477)	PPP1R13L (ENSANAG00000023805)	ERCC2 (ENSANAG00000022694)	ENSANAG00000020750	CKM (ENSANAG00000029385) ##22	MARK4 (ENSANAG00000038277)	EXOC3L2 (ENSANAG00000037617) ##27	TRAPPC6A (ENSANAG00000032868)	NKPD1 (ENSANAG00000017851)	PPP1R37 (ENSANAG00000019671)	GEMIN7 (ENSANAG00000019968)	ZNF296 (ENSANAG00000038105)	CLASRP (ENSANAG00000023127)	RELB (ENSANAG00000023130)	CLPTM1 (ENSANAG00000027215)	APOC2 (ENSANAG00000027288)	APOC4 (ENSANAG00000027471)	APOE (ENSANAG00000028543)	TOMM40 (ENSANAG00000034303)	NECTIN2 (ENSANAG00000032757)
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Hominidae	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Pan	ANCESTRAL SPECIES	9	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Chimpanzee	MODERN SPECIES	10	QPCTL (ENSPTRG00000011163)	SNRPD2 (ENSPTRG00000011162)	GIPR (ENSPTRG00000050104)	ENSPTRG00000048889	GPR4 (ENSPTRG00000051128)	OPA3 (ENSPTRG00000045719)	VASP (ENSPTRG00000046601)	PPM1N (ENSPTRG00000047461)	RTN2 (ENSPTRG00000047264)	FOSB (ENSPTRG00000046160)	ERCC1 (ENSPTRG00000011152)	POLR1G (ENSPTRG00000011151)	PPP1R13L (ENSPTRG00000011150)	ERCC2 (ENSPTRG00000011149)	KLC3 (ENSPTRG00000011148)	CKM (ENSPTRG00000011147) ##22	MARK4 (ENSPTRG00000011145)	EXOC3L2 (ENSPTRG00000011144) ##27	BLOC1S3 (ENSPTRG00000011143)	TRAPPC6A (ENSPTRG00000043883)	NKPD1 (ENSPTRG00000011141)	PPP1R37 (ENSPTRG00000011139)	GEMIN7 (ENSPTRG00000044428)	ZNF296 (ENSPTRG00000011136)	CLASRP (ENSPTRG00000022583)	RELB (ENSPTRG00000011133)	CLPTM1 (ENSPTRG00000011131)	APOC4 (ENSPTRG00000033962)	ENSPTRG00000038932	APOC1 (ENSPTRG00000011128)	APOE (ENSPTRG00000011127)
Bonobo	MODERN SPECIES	10	QPCTL (ENSPPAG00000028397)	SNRPD2 (ENSPPAG00000038031)	GIPR (ENSPPAG00000030152)	ENSPPAG00000013251	GPR4 (ENSPPAG00000008436)	ENSPPAG00000040725	VASP (ENSPPAG00000037088)	ENSPPAG00000030480	RTN2 (ENSPPAG00000038328)	FOSB (ENSPPAG00000035998)	ERCC1 (ENSPPAG00000043568)	POLR1G (ENSPPAG00000004958)	ENSPPAG00000036951	ERCC2 (ENSPPAG00000044005)	KLC3 (ENSPPAG00000043966)	CKM (ENSPPAG00000037821) ##22	MARK4 (ENSPPAG00000031718)	ENSPPAG00000039633 ##27	TRAPPC6A (ENSPPAG00000025811)	PPP1R37 (ENSPPAG00000031033)	GEMIN7 (ENSPPAG00000023831)	ZNF296 (ENSPPAG00000016242)	CLASRP (ENSPPAG00000040215)	RELB (ENSPPAG00000030963)	CLPTM1 (ENSPPAG00000038262)	ENSPPAG00000042437	ENSPPAG00000036696	APOE (ENSPPAG00000034562)	TOMM40 (ENSPPAG00000034103)	NECTIN2 (ENSPPAG00000041775)	BCAM (ENSPPAG00000034413)
Human	MODERN SPECIES	10	QPCTL (ENSG00000011478)	SNRPD2 (ENSG00000125743)	GIPR (ENSG00000010310)	EML2 (ENSG00000125746)	GPR4 (ENSG00000177464)	OPA3 (ENSG00000125741)	VASP (ENSG00000125753)	PPM1N (ENSG00000213889)	RTN2 (ENSG00000125744)	FOSB (ENSG00000125740)	ERCC1 (ENSG00000012061)	POLR1G (ENSG00000117877)	PPP1R13L (ENSG00000104881)	ERCC2 (ENSG00000104884)	KLC3 (ENSG00000104892)	CKM (ENSG00000104879) ##22	EXOC3L2 (ENSG00000283632) ##27	BLOC1S3 (ENSG00000189114)	TRAPPC6A (ENSG00000007255)	NKPD1 (ENSG00000179846)	PPP1R37 (ENSG00000104866)	MARK4 (ENSG00000007047)	GEMIN7 (ENSG00000142252)	ZNF296 (ENSG00000170684)	CLASRP (ENSG00000104859)	RELB (ENSG00000104856)	CLPTM1 (ENSG00000104853)	APOC2 (ENSG00000234906)	APOC4-APOC2 (ENSG00000224916)	APOC4 (ENSG00000267467)	APOC1 (ENSG00000130208)
Gorilla	MODERN SPECIES	10	FBXO46 (ENSGGOG00000027287)	QPCTL (ENSGGOG00000002353)	SNRPD2 (ENSGGOG00000002350)	GIPR (ENSGGOG00000016144)	ENSGGOG00000015482	GPR4 (ENSGGOG00000043968)	ENSGGOG00000009890	VASP (ENSGGOG00000009879)	PPM1N (ENSGGOG00000000024)	RTN2 (ENSGGOG00000009863)	FOSB (ENSGGOG00000010952)	ERCC1 (ENSGGOG00000014332)	ENSGGOG00000015872	ERCC2 (ENSGGOG00000015842)	KLC3 (ENSGGOG00000015830)	CKM (ENSGGOG00000008806) ##22	MARK4 (ENSGGOG00000008801)	EXOC3L2 (ENSGGOG00000010717) ##27	ENSGGOG00000028003	TRAPPC6A (ENSGGOG00000008686)	ENSGGOG00000008682	PPP1R37 (ENSGGOG00000008674)	GEMIN7 (ENSGGOG00000037037)	ZNF296 (ENSGGOG00000003398)	CLASRP (ENSGGOG00000003384)	RELB (ENSGGOG00000003380)	CLPTM1 (ENSGGOG00000008020)	ENSGGOG00000022601	APOC1A (ENSGGOG00000022078)	ENSGGOG00000037352	APOE (ENSGGOG00000006377)
Orangutan	MODERN SPECIES	10	QPCTL (ENSPPYG00000010130)	ENSPPYG00000010129	GIPR (ENSPPYG00000010128)	ENSPPYG00000010127	GPR4 (ENSPPYG00000010126)	ENSPPYG00000032022	VASP (ENSPPYG00000010124)	PPM1N (ENSPPYG00000030671)	RTN2 (ENSPPYG00000010122)	FOSB (ENSPPYG00000010121)	ERCC1 (ENSPPYG00000010120)	POLR1G (ENSPPYG00000010119)	PPP1R13L (ENSPPYG00000010118)	ERCC2 (ENSPPYG00000010117)	KLC3 (ENSPPYG00000010116)	CKM (ENSPPYG00000010114) ##22	MARK4 (ENSPPYG00000010113)	EXOC3L2 (ENSPPYG00000034441) ##27	BLOC1S3 (ENSPPYG00000010110)	ENSPPYG00000010109	NKPD1 (ENSPPYG00000010108)	PPP1R37 (ENSPPYG00000010107)	GEMIN7 (ENSPPYG00000010106)	ZNF296 (ENSPPYG00000010105)	CLASRP (ENSPPYG00000010104)	RELB (ENSPPYG00000010103)	CLPTM1 (ENSPPYG00000010102)	APOC2 (ENSPPYG00000010101)	APOC4 (ENSPPYG00000040693)	ENSPPYG00000010100	APOE (ENSPPYG00000010099)
Gibbon	MODERN SPECIES	7	ENSNLEG00000002287	SNRPD2 (ENSNLEG00000002274)	ENSNLEG00000002246	GPR4 (ENSNLEG00000030194)	ENSNLEG00000002240	VASP (ENSNLEG00000002237)	PPM1N (ENSNLEG00000002225)	RTN2 (ENSNLEG00000002100)	FOSB (ENSNLEG00000002090)	ENSNLEG00000002069	POLR1G (ENSNLEG00000035363)	ENSNLEG00000002011	ENSNLEG00000001994	ENSNLEG00000001990	ENSNLEG00000035942	ENSNLEG00000001978 ##22	MARK4 (ENSNLEG00000001909)	ENSNLEG00000001907 ##27	BLOC1S3 (ENSNLEG00000018406)	TRAPPC6A (ENSNLEG00000033419)	ENSNLEG00000033759	PPP1R37 (ENSNLEG00000001875)	GEMIN7 (ENSNLEG00000001846)	ZNF296 (ENSNLEG00000001844)	CLASRP (ENSNLEG00000001811)	RELB (ENSNLEG00000001809)	CLPTM1 (ENSNLEG00000001779)	APOC4 (ENSNLEG00000001763)	APOE (ENSNLEG00000001740)	ENSNLEG00000001726	ENSNLEG00000026567
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765.p	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.a	ENSGT00950000182929.B.b
Golden snub-nosed monkey	MODERN SPECIES	2027	SNRPD2 (ENSRROG00000034764)	GIPR (ENSRROG00000031321)	EML2 (ENSRROG00000035796)	GPR4 (ENSRROG00000019999)	OPA3 (ENSRROG00000034269)	VASP (ENSRROG00000044619)	PPM1N (ENSRROG00000029244)	RTN2 (ENSRROG00000038364)	ENSRROG00000044485	FOSB (ENSRROG00000014678)	ERCC1 (ENSRROG00000043870)	POLR1G (ENSRROG00000043410)	ENSRROG00000041629	ERCC2 (ENSRROG00000040423)	KLC3 (ENSRROG00000006762)	CKM (ENSRROG00000043521) ##22	ENSRROG00000028468	MARK4 (ENSRROG00000042751)	EXOC3L2 (ENSRROG00000033651) ##27	TRAPPC6A (ENSRROG00000031935)	PPP1R37 (ENSRROG00000043405)	GEMIN7 (ENSRROG00000044813)	ZNF296 (ENSRROG00000037896)	CLASRP (ENSRROG00000045419)	RELB (ENSRROG00000031217)	CLPTM1 (ENSRROG00000030689)	APOC2 (ENSRROG00000045650)	APOC4 (ENSRROG00000031862)	ENSRROG00000039964	APOE (ENSRROG00000029603)	TOMM40 (ENSRROG00000037978)
Black snub-nosed monkey	MODERN SPECIES	477	QPCTL (ENSRBIG00000037229)	ENSRBIG00000040969	GIPR (ENSRBIG00000044071)	EML2 (ENSRBIG00000027020)	GPR4 (ENSRBIG00000032340)	OPA3 (ENSRBIG00000038135)	ENSRBIG00000034996	PPM1N (ENSRBIG00000033587)	ENSRBIG00000034412	FOSB (ENSRBIG00000028796)	ERCC1 (ENSRBIG00000043956)	POLR1G (ENSRBIG00000040738)	ENSRBIG00000028434	ERCC2 (ENSRBIG00000031575)	KLC3 (ENSRBIG00000029912)	CKM (ENSRBIG00000040733) ##22	ENSRBIG00000003076	MARK4 (ENSRBIG00000042653)	EXOC3L2 (ENSRBIG00000029965) ##27	BLOC1S3 (ENSRBIG00000010173)	TRAPPC6A (ENSRBIG00000028873)	PPP1R37 (ENSRBIG00000034685)	ZNF296 (ENSRBIG00000038795)	CLASRP (ENSRBIG00000042924)	RELB (ENSRBIG00000039429)	CLPTM1 (ENSRBIG00000022972)	APOC2 (ENSRBIG00000034907)	APOC4 (ENSRBIG00000039672)	ENSRBIG00000030257	APOE (ENSRBIG00000034780)	TOMM40 (ENSRBIG00000041415)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Vervet Monkey	MODERN SPECIES	25	QPCTL (ENSCSAG00000003156)	SNRPD2 (ENSCSAG00000003157)	GIPR (ENSCSAG00000003163)	GPR4 (ENSCSAG00000019626)	OPA3 (ENSCSAG00000003168)	VASP (ENSCSAG00000003169)	PPM1N (ENSCSAG00000003172)	RTN2 (ENSCSAG00000003175)	ENSCSAG00000003176	ERCC1 (ENSCSAG00000003179)	POLR1G (ENSCSAG00000003181)	PPP1R13L (ENSCSAG00000003183)	ENSCSAG00000003187	ERCC2 (ENSCSAG00000003189)	KLC3 (ENSCSAG00000003201)	CKM (ENSCSAG00000003204) ##22	MARK4 (ENSCSAG00000003211)	ENSCSAG00000019625	EXOC3L2 (ENSCSAG00000003214) ##27	BLOC1S3 (ENSCSAG00000019624)	TRAPPC6A (ENSCSAG00000003218)	NKPD1 (ENSCSAG00000019623)	PPP1R37 (ENSCSAG00000003221)	GEMIN7 (ENSCSAG00000019622)	ZNF296 (ENSCSAG00000003225)	CLASRP (ENSCSAG00000003231)	RELB (ENSCSAG00000003233)	CLPTM1 (ENSCSAG00000003235)	APOC2 (ENSCSAG00000003240)	APOC4 (ENSCSAG00000003243)	APOC1 (ENSCSAG00000003245)
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Macaca	ANCESTRAL SPECIES	12	ENSGT00390000003107.b	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.a	ENSGT00950000182929.B.b
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.a.a.b	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.a	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Rhesus	MODERN SPECIES	10	GIPR (ENSMMUG00000006936)	ENSMMUG00000019032	GPR4 (ENSMMUG00000019031)	ENSMMUG00000058115	OPA3 (ENSMMUG00000053242)	VASP (ENSMMUG00000022938)	PPM1N (ENSMMUG00000011715)	RTN2 (ENSMMUG00000011716)	FOSB (ENSMMUG00000014430)	ENSMMUG00000049515	ERCC1 (ENSMMUG00000000718)	POLR1G (ENSMMUG00000000717)	PPP1R13L (ENSMMUG00000000715)	ERCC2 (ENSMMUG00000014419)	KLC3 (ENSMMUG00000021891)	CKM (ENSMMUG00000013477) ##22	MARK4 (ENSMMUG00000018672)	ENSMMUG00000018879 ##27	BLOC1S3 (ENSMMUG00000022934)	NKPD1 (ENSMMUG00000022931)	PPP1R37 (ENSMMUG00000022930)	ENSMMUG00000060815	ZNF296 (ENSMMUG00000061579)	CLASRP (ENSMMUG00000014155)	RELB (ENSMMUG00000014153)	CLPTM1 (ENSMMUG00000002472)	APOC2 (ENSMMUG00000055305)	APOC4 (ENSMMUG00000002471)	APOC1 (ENSMMUG00000028749)	APOE (ENSMMUG00000014305)	TOMM40 (ENSMMUG00000014303)
Pig-tailed macaque	MODERN SPECIES	551	QPCTL (ENSMNEG00000035757)	ENSMNEG00000039787	GIPR (ENSMNEG00000035353)	ENSMNEG00000042527	GPR4 (ENSMNEG00000002892)	OPA3 (ENSMNEG00000040409)	VASP (ENSMNEG00000031417)	PPM1N (ENSMNEG00000033670)	RTN2 (ENSMNEG00000034805)	FOSB (ENSMNEG00000038931)	ERCC1 (ENSMNEG00000012554)	POLR1G (ENSMNEG00000028086)	PPP1R13L (ENSMNEG00000034033)	ERCC2 (ENSMNEG00000042641)	KLC3 (ENSMNEG00000040957)	CKM (ENSMNEG00000034259) ##22	MARK4 (ENSMNEG00000031127)	EXOC3L2 (ENSMNEG00000044544) ##27	BLOC1S3 (ENSMNEG00000020790)	TRAPPC6A (ENSMNEG00000039973)	NKPD1 (ENSMNEG00000012192)	PPP1R37 (ENSMNEG00000033613)	GEMIN7 (ENSMNEG00000022258)	ZNF296 (ENSMNEG00000030927)	CLASRP (ENSMNEG00000000043)	RELB (ENSMNEG00000036702)	CLPTM1 (ENSMNEG00000032456)	APOC2 (ENSMNEG00000038542)	APOC4 (ENSMNEG00000035912)	ENSMNEG00000028685	APOE (ENSMNEG00000032951)
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Olive baboon	MODERN SPECIES	12	PPM1N (ENSPANG00000005403)	RTN2 (ENSPANG00000009463)	FOSB (ENSPANG00000002665)	ERCC1 (ENSPANG00000014628)	POLR1G (ENSPANG00000014599)	PPP1R13L (ENSPANG00000008539)	NTF4 (ENSPANG00000005193)	KCNA7 (ENSPANG00000010667)	SNRNP70 (ENSPANG00000004068)	LIN7B (ENSPANG00000002302)	PPFIA3 (ENSPANG00000025706)	HRC (ENSPANG00000031499)	ENSPANG00000030135	ERCC2 (ENSPANG00000032195)	KLC3 (ENSPANG00000024512)	CKM (ENSPANG00000012803) ##22	MARK4 (ENSPANG00000007316)	EXOC3L2 (ENSPANG00000008803) ##27	BLOC1S3 (ENSPANG00000045388)	TRAPPC6A (ENSPANG00000008090)	NKPD1 (ENSPANG00000005270)	PPP1R37 (ENSPANG00000002967)	GEMIN7 (ENSPANG00000012354)	ZNF296 (ENSPANG00000011600)	CLASRP (ENSPANG00000012804)	RELB (ENSPANG00000007219)	CLPTM1 (ENSPANG00000024331)	APOC2 (ENSPANG00000024333)	APOC4 (ENSPANG00000024334)	ENSPANG00000024326	APOE (ENSPANG00000031383)
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT00390000017608.b.nb	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00390000013067.a.a	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039.e	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.c.b	ENSGT00390000011584.c.a
Sooty mangabey	MODERN SPECIES	228	GIPR (ENSCATG00000039010)	EML2 (ENSCATG00000044498)	GPR4 (ENSCATG00000015059)	OPA3 (ENSCATG00000032509)	VASP (ENSCATG00000042996)	PPM1N (ENSCATG00000038667)	RTN2 (ENSCATG00000038527)	FOSB (ENSCATG00000042659)	ERCC1 (ENSCATG00000015252)	POLR1G (ENSCATG00000030677)	PPP1R13L (ENSCATG00000034656)	ENSCATG00000031579	ENSCATG00000044649	KLC3 (ENSCATG00000043270)	ENSCATG00000033695	CKM (ENSCATG00000014030) ##22	MARK4 (ENSCATG00000045079)	EXOC3L2 (ENSCATG00000038609) ##27	BLOC1S3 (ENSCATG00000015025)	TRAPPC6A (ENSCATG00000042258)	NKPD1 (ENSCATG00000015132)	PPP1R37 (ENSCATG00000039813)	GEMIN7 (ENSCATG00000015354)	ZNF296 (ENSCATG00000015397)	CLASRP (ENSCATG00000040827)	RELB (ENSCATG00000018277)	CLPTM1 (ENSCATG00000041177)	APOC2 (ENSCATG00000033379)	APOC4 (ENSCATG00000028747)	ENSCATG00000030093	ENSCATG00000039865
Drill	MODERN SPECIES	494	GIPR (ENSMLEG00000043576)	ENSMLEG00000030229	GPR4 (ENSMLEG00000003807)	ENSMLEG00000031803	OPA3 (ENSMLEG00000040108)	VASP (ENSMLEG00000041511)	ENSMLEG00000013387	RTN2 (ENSMLEG00000031919)	FOSB (ENSMLEG00000033569)	ERCC1 (ENSMLEG00000029656)	POLR1G (ENSMLEG00000043530)	ENSMLEG00000031086	ERCC2 (ENSMLEG00000043492)	KLC3 (ENSMLEG00000040381)	ENSMLEG00000028116	CKM (ENSMLEG00000037963) ##22	MARK4 (ENSMLEG00000043604)	EXOC3L2 (ENSMLEG00000043963) ##27	TRAPPC6A (ENSMLEG00000030819)	PPP1R37 (ENSMLEG00000044303)	GEMIN7 (ENSMLEG00000028032)	ZNF296 (ENSMLEG00000031124)	CLASRP (ENSMLEG00000034161)	RELB (ENSMLEG00000041838)	CLPTM1 (ENSMLEG00000030661)	APOC2 (ENSMLEG00000043412)	APOC4 (ENSMLEG00000027913)	APOC1 (ENSMLEG00000033709)	NECTIN2 (ENSMLEG00000043645)	BCAM (ENSMLEG00000028754)	BCL3 (ENSMLEG00000033523)
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Suina	ANCESTRAL SPECIES	2	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Pig	MODERN SPECIES	14	QPCTL (ENSSSCG00000032819)	SNRPD2 (ENSSSCG00000033500)	GIPR (ENSSSCG00000021053)	EML2 (ENSSSCG00000038229)	GPR4 (ENSSSCG00000037184)	OPA3 (ENSSSCG00000058475)	VASP (ENSSSCG00000036317)	PPM1N (ENSSSCG00000037001)	RTN2 (ENSSSCG00000036870)	FOSB (ENSSSCG00000031616)	ERCC1 (ENSSSCG00000055289)	POLR1G (ENSSSCG00000020754)	PPP1R13L (ENSSSCG00000036542)	ERCC2 (ENSSSCG00000039929)	KLC3 (ENSSSCG00000039864)	CKM (ENSSSCG00000036132) ##22	MARK4 (ENSSSCG00000022538)	EXOC3L2 (ENSSSCG00000040410) ##27	ENSSSCG00000035706	TRAPPC6A (ENSSSCG00000035374)	NKPD1 (ENSSSCG00000035833)	PPP1R37 (ENSSSCG00000037056)	GEMIN7 (ENSSSCG00000033194)	ENSSSCG00000031166	CLASRP (ENSSSCG00000040264)	RELB (ENSSSCG00000038879)	CLPTM1 (ENSSSCG00000003085)	ENSSSCG00000003086	APOC4 (ENSSSCG00000058983)	APOE (ENSSSCG00000003088)	TOMM40 (ENSSSCG00000003089)
Chacoan peccary	MODERN SPECIES	799	QPCTL (ENSCWAG00000007680)	SNRPD2 (ENSCWAG00000007655)	GIPR (ENSCWAG00000007383)	EML2 (ENSCWAG00000006972)	GPR4 (ENSCWAG00000006910)	OPA3 (ENSCWAG00000006875)	VASP (ENSCWAG00000006847)	PPM1N (ENSCWAG00000006758)	RTN2 (ENSCWAG00000006684)	FOSB (ENSCWAG00000006321)	ERCC1 (ENSCWAG00000006073)	POLR1G (ENSCWAG00000006042)	PPP1R13L (ENSCWAG00000007629)	ERCC2 (ENSCWAG00000007442)	KLC3 (ENSCWAG00000007378)	CKM (ENSCWAG00000007339) ##22	MARK4 (ENSCWAG00000007300)	EXOC3L2 (ENSCWAG00000007215) ##27	ENSCWAG00000007136	BLOC1S3 (ENSCWAG00000007112)	TRAPPC6A (ENSCWAG00000007010)	NKPD1 (ENSCWAG00000006981)	PPP1R37 (ENSCWAG00000006951)	GEMIN7 (ENSCWAG00000006937)	ZNF296 (ENSCWAG00000006900)	CLASRP (ENSCWAG00000006711)	RELB (ENSCWAG00000006535)	CLPTM1 (ENSCWAG00000006437)	APOC2 (ENSCWAG00000006393)	ENSCWAG00000006373	APOE (ENSCWAG00000006358)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Camelidae	ANCESTRAL SPECIES	15	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000012948.a	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a	ENSGT00940000161167
Alpaca	MODERN SPECIES	3363																ENSVPAG00000011152 ##22
Arabian camel	MODERN SPECIES	35	QPCTL (ENSCDRG00005009916)	SNRPD2 (ENSCDRG00005009839)	GIPR (ENSCDRG00005009575)	EML2 (ENSCDRG00005008817)	GPR4 (ENSCDRG00005008750)	OPA3 (ENSCDRG00005008699)	VASP (ENSCDRG00005008655)	ENSCDRG00005008614	RTN2 (ENSCDRG00005008404)	FOSB (ENSCDRG00005008193)	ERCC1 (ENSCDRG00005007850)	POLR1G (ENSCDRG00005007827)	PPP1R13L (ENSCDRG00005007577)	ERCC2 (ENSCDRG00005007441)	KLC3 (ENSCDRG00005007396)	CKM (ENSCDRG00005007135) ##22	MARK4 (ENSCDRG00005007201)	ENSCDRG00005007088 ##27	ENSCDRG00005007044	TRAPPC6A (ENSCDRG00005006907)	PPP1R37 (ENSCDRG00005006789)	GEMIN7 (ENSCDRG00005006771)	ZNF296 (ENSCDRG00005006724)	CLASRP (ENSCDRG00005006557)	RELB (ENSCDRG00005006405)	CLPTM1 (ENSCDRG00005006349)	APOC2 (ENSCDRG00005006292)	APOC4 (ENSCDRG00005006257)	ENSCDRG00005006242	APOE (ENSCDRG00005006223)	ENSCDRG00005006192
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Cetacea	ANCESTRAL SPECIES	6	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00390000017608.b.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000235762	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Narwhal	MODERN SPECIES	296	ENSMMNG00015007488	GIPR (ENSMMNG00015007342)	EML2 (ENSMMNG00015007133)	GPR4 (ENSMMNG00015007074)	OPA3 (ENSMMNG00015007066)	VASP (ENSMMNG00015007042)	PPM1N (ENSMMNG00015007023)	RTN2 (ENSMMNG00015006960)	FOSB (ENSMMNG00015006909)	ERCC1 (ENSMMNG00015006840)	POLR1G (ENSMMNG00015006785)	PPP1R13L (ENSMMNG00015006754)	ERCC2 (ENSMMNG00015006706)	KLC3 (ENSMMNG00015006659)	ENSMMNG00015006648	CKM (ENSMMNG00015006634) ##22	MARK4 (ENSMMNG00015006596)	EXOC3L2 (ENSMMNG00015006566) ##27	BLOC1S3 (ENSMMNG00015006548)	TRAPPC6A (ENSMMNG00015006532)	NKPD1 (ENSMMNG00015006511)	PPP1R37 (ENSMMNG00015006472)	GEMIN7 (ENSMMNG00015006455)	ZNF296 (ENSMMNG00015006446)	CLASRP (ENSMMNG00015006402)	RELB (ENSMMNG00015006315)	CLPTM1 (ENSMMNG00015006240)	APOC2 (ENSMMNG00015006207)	ENSMMNG00015006191	APOE (ENSMMNG00015006181)	TOMM40 (ENSMMNG00015006165)
Beluga whale	MODERN SPECIES	14	QPCTL (ENSDLEG00000000148)	SNRPD2 (ENSDLEG00000000188)	GIPR (ENSDLEG00000000221)	EML2 (ENSDLEG00000000275)	OPA3 (ENSDLEG00000000472)	VASP (ENSDLEG00000000495)	ENSDLEG00000000541	RTN2 (ENSDLEG00000000550)	FOSB (ENSDLEG00000000573)	ERCC1 (ENSDLEG00000000601)	CD3EAP (ENSDLEG00000000625)	PPP1R13L (ENSDLEG00000000687)	ERCC2 (ENSDLEG00000000789)	KLC3 (ENSDLEG00000000859)	ENSDLEG00000000880	CKM (ENSDLEG00000000888) ##22	MARK4 (ENSDLEG00000000908)	EXOC3L2 (ENSDLEG00000000960) ##27	BLOC1S3 (ENSDLEG00000000976)	TRAPPC6A (ENSDLEG00000000994)	NKPD1 (ENSDLEG00000001026)	PPP1R37 (ENSDLEG00000001075)	GEMIN7 (ENSDLEG00000001187)	ZNF296 (ENSDLEG00000001191)	CLASRP (ENSDLEG00000001206)	RELB (ENSDLEG00000001259)	CLPTM1 (ENSDLEG00000001367)	APOC2 (ENSDLEG00000001379)	ENSDLEG00000001388	APOE (ENSDLEG00000001401)	TOMM40 (ENSDLEG00000001411)
Vaquita	MODERN SPECIES	10	ENSPSNG00000007055	GIPR (ENSPSNG00000007181)	EML2 (ENSPSNG00000007601)	GPR4 (ENSPSNG00000007964)	OPA3 (ENSPSNG00000007984)	VASP (ENSPSNG00000008004)	PPM1N (ENSPSNG00000008040)	RTN2 (ENSPSNG00000008107)	FOSB (ENSPSNG00000008236)	ERCC1 (ENSPSNG00000008412)	POLR1G (ENSPSNG00000008629)	PPP1R13L (ENSPSNG00000008669)	ERCC2 (ENSPSNG00000008714)	KLC3 (ENSPSNG00000008893)	ENSPSNG00000009068	CKM (ENSPSNG00000009085) ##22	MARK4 (ENSPSNG00000009176)	EXOC3L2 (ENSPSNG00000009277) ##27	ENSPSNG00000009335	TRAPPC6A (ENSPSNG00000009421)	NKPD1 (ENSPSNG00000009471)	PPP1R37 (ENSPSNG00000009509)	GEMIN7 (ENSPSNG00000009616)	ZNF296 (ENSPSNG00000009665)	CLASRP (ENSPSNG00000009802)	RELB (ENSPSNG00000009978)	CLPTM1 (ENSPSNG00000010345)	APOC2 (ENSPSNG00000010569)	ENSPSNG00000010685	APOE (ENSPSNG00000010763)	TOMM40 (ENSPSNG00000010804)
Dolphin	MODERN SPECIES	2445							VASP (ENSTTRG00000008328)	ENSTTRG00000008327	RTN2 (ENSTTRG00000008318)	FOSB (ENSTTRG00000008316)	ERCC1 (ENSTTRG00000008312)	POLR1G (ENSTTRG00000008311)	PPP1R13L (ENSTTRG00000008306)	ERCC2 (ENSTTRG00000008297)	KLC3 (ENSTTRG00000008289)	CKM (ENSTTRG00000008283) ##22	MARK4 (ENSTTRG00000008272)
Sperm whale	MODERN SPECIES	42						ENSPCTG00005017393	PPM1N (ENSPCTG00005017474)	RTN2 (ENSPCTG00005017793)	FOSB (ENSPCTG00005017925)	ERCC1 (ENSPCTG00005018106)	CD3EAP (ENSPCTG00005018334)	PPP1R13L (ENSPCTG00005018378)	ERCC2 (ENSPCTG00005018423)	KLC3 (ENSPCTG00005018519)	ENSPCTG00005018762	CK (ENSPCTG00005018779) ##22	MARK4 (ENSPCTG00005018813)
Blue whale	MODERN SPECIES	10	SNRPD2 (ENSBMSG00010014687)	GIPR (ENSBMSG00010014763)	EML2 (ENSBMSG00010015025)	GPR4 (ENSBMSG00010015297)	OPA3 (ENSBMSG00010015309)	VASP (ENSBMSG00010015338)	PPM1N (ENSBMSG00010015387)	RTN2 (ENSBMSG00010015497)	FOSB (ENSBMSG00010015683)	ERCC1 (ENSBMSG00010015851)	POLR1G (ENSBMSG00010015986)	PPP1R13L (ENSBMSG00010016007)	ERCC2 (ENSBMSG00010016132)	KLC3 (ENSBMSG00010016396)	ENSBMSG00010016434	CKM (ENSBMSG00010016453) ##22	MARK4 (ENSBMSG00010016517)	EXOC3L2 (ENSBMSG00010016591) ##27	BLOC1S3 (ENSBMSG00010016676)	TRAPPC6A (ENSBMSG00010016722)	NKPD1 (ENSBMSG00010016786)	PPP1R37 (ENSBMSG00010016804)	GEMIN7 (ENSBMSG00010016828)	ZNF296 (ENSBMSG00010016843)	CLASRP (ENSBMSG00010016903)	RELB (ENSBMSG00010016973)	CLPTM1 (ENSBMSG00010017164)	APOC2 (ENSBMSG00010017237)	ENSBMSG00010017290	APOE (ENSBMSG00010017333)	TOMM40 (ENSBMSG00010017365)
Pecora	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Yarkand deer	MODERN SPECIES	27	SNRPD2 (ENSCHYG00000011477)	GIPR (ENSCHYG00000011385)	EML2 (ENSCHYG00000010342)	GPR4 (ENSCHYG00000010273)	ENSCHYG00000010242	OPA3 (ENSCHYG00000010190)	VASP (ENSCHYG00000009950)	PPM1N (ENSCHYG00000009858)	RTN2 (ENSCHYG00000009668)	FOSB (ENSCHYG00000009403)	ERCC1 (ENSCHYG00000008940)	POLR1G (ENSCHYG00000008868)	PPP1R13L (ENSCHYG00000003620)	ERCC2 (ENSCHYG00000003567)	KLC3 (ENSCHYG00000003518)	CKM (ENSCHYG00000003484) ##22	MARK4 (ENSCHYG00000003252)	ENSCHYG00000003176 ##27	ENSCHYG00000003168	ENSCHYG00000003146	BLOC1S3 (ENSCHYG00000003138)	TRAPPC6A (ENSCHYG00000003117)	NKPD1 (ENSCHYG00000003100)	PPP1R37 (ENSCHYG00000003054)	GEMIN7 (ENSCHYG00000003032)	ZNF296 (ENSCHYG00000003020)	CLASRP (ENSCHYG00000002995)	RELB (ENSCHYG00000002941)	ENSCHYG00000002909	ENSCHYG00000002894	APOE (ENSCHYG00000002871)
Percora_a	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Siberian musk deer	MODERN SPECIES	124	GIPR (ENSMMSG00000002994)	EML2 (ENSMMSG00000003108)	GPR4 (ENSMMSG00000003234)	OPA3 (ENSMMSG00000003240)	ENSMMSG00000003249	VASP (ENSMMSG00000003264)	ENSMMSG00000003279	ENSMMSG00000003289	RTN2 (ENSMMSG00000003303)	FOSB (ENSMMSG00000003347)	ERCC1 (ENSMMSG00000003423)	POLR1G (ENSMMSG00000003491)	PPP1R13L (ENSMMSG00000003509)	ERCC2 (ENSMMSG00000003542)	KLC3 (ENSMMSG00000003590)	CKM (ENSMMSG00000003622) ##22	MARK4 (ENSMMSG00000003654)	EXOC3L2 (ENSMMSG00000003701) ##27	ENSMMSG00000003741	ENSMMSG00000003778	BLOC1S3 (ENSMMSG00000003789)	TRAPPC6A (ENSMMSG00000014337)	NKPD1 (ENSMMSG00000014391)	PPP1R37 (ENSMMSG00000014402)	GEMIN7 (ENSMMSG00000014420)	ZNF296 (ENSMMSG00000014434)	CLASRP (ENSMMSG00000014455)	RELB (ENSMMSG00000014533)	CLPTM1 (ENSMMSG00000014687)	APOC2 (ENSMMSG00000014744)	ENSMMSG00000014768
Bovidae	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Caprinae	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Rambouillet Sheep	MODERN SPECIES	5	SNRPD2 (ENSOARG00020011522)	GIPR (ENSOARG00020010483)	EML2 (ENSOARG00020009160)	GPR4 (ENSOARG00020009088)	OPA3 (ENSOARG00020009064)	VASP (ENSOARG00020009004)	PPM1N (ENSOARG00020008873)	RTN2 (ENSOARG00020008656)	FOSB (ENSOARG00020008243)	ERCC1 (ENSOARG00020007969)	POLR1G (ENSOARG00020007892)	PPP1R13L (ENSOARG00020007840)	ENSOARG00020007820	ERCC2 (ENSOARG00020007166)	KLC3 (ENSOARG00020006917)	CKM (ENSOARG00020006864) ##22	MARK4 (ENSOARG00020006366)	EXOC3L2 (ENSOARG00020006236) ##27	ENSOARG00020006214	ENSOARG00020006186	ENSOARG00020006173	BLOC1S3 (ENSOARG00020006168)	TRAPPC6A (ENSOARG00020006142)	NKPD1 (ENSOARG00020006130)	PPP1R37 (ENSOARG00020006113)	GEMIN7 (ENSOARG00020006101)	ZNF296 (ENSOARG00020006063)	CLASRP (ENSOARG00020005970)	RELB (ENSOARG00020005934)	CLPTM1 (ENSOARG00020005849)	APOC2 (ENSOARG00020005819)
Goat	MODERN SPECIES	9	ENSCHIG00000015755	GIPR (ENSCHIG00000020718)	EML2 (ENSCHIG00000013582)	GPR4 (ENSCHIG00000005655)	ENSCHIG00000010098	OPA3 (ENSCHIG00000017112)	VASP (ENSCHIG00000012132)	PPM1N (ENSCHIG00000021371)	RTN2 (ENSCHIG00000014657)	FOSB (ENSCHIG00000003296)	POLR1G (ENSCHIG00000022038)	ERCC1 (ENSCHIG00000025635)	PPP1R13L (ENSCHIG00000025842)	ERCC2 (ENSCHIG00000022980)	KLC3 (ENSCHIG00000026294)	CKM (ENSCHIG00000024701) ##22	MARK4 (ENSCHIG00000020349)	EXOC3L2 (ENSCHIG00000009277) ##27	ENSCHIG00000023872	BLOC1S3 (ENSCHIG00000012308)	TRAPPC6A (ENSCHIG00000001236)	NKPD1 (ENSCHIG00000024854)	PPP1R37 (ENSCHIG00000026154)	GEMIN7 (ENSCHIG00000010022)	ZNF296 (ENSCHIG00000002342)	CLASRP (ENSCHIG00000024252)	RELB (ENSCHIG00000012617)	CLPTM1 (ENSCHIG00000005999)	APOC2 (ENSCHIG00000016235)	ENSCHIG00000023824	ENSCHIG00000009240
Bovinae	ANCESTRAL SPECIES	3	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00960000187132	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913
American bison	MODERN SPECIES	3227	QPCTL (ENSBBBG00000000961)	SNRPD2 (ENSBBBG00000000935)	GIPR (ENSBBBG00000000834)	EML2 (ENSBBBG00000014978)	GPR4 (ENSBBBG00000003575)	OPA3 (ENSBBBG00000003720)	VASP (ENSBBBG00000015011)	PPM1N (ENSBBBG00000015044)	RTN2 (ENSBBBG00000003740)	FOSB (ENSBBBG00000003755)	ERCC1 (ENSBBBG00000015250)	POLR1G (ENSBBBG00000015276)	PPP1R13L (ENSBBBG00000015318)	ERCC2 (ENSBBBG00000001271)	KLC3 (ENSBBBG00000003490)	CKM (ENSBBBG00000003808) ##22	MARK4 (ENSBBBG00000015357)	EXOC3L2 (ENSBBBG00000001245) ##27	ENSBBBG00000015410	ENSBBBG00000015413	BLOC1S3 (ENSBBBG00000015420)	TRAPPC6A (ENSBBBG00000015438)	NKPD1 (ENSBBBG00000015453)	PPP1R37 (ENSBBBG00000003853)	GEMIN7 (ENSBBBG00000015475)	ZNF296 (ENSBBBG00000015485)	CLASRP (ENSBBBG00000015593)	RELB (ENSBBBG00000003442)	CLPTM1 (ENSBBBG00000015636)	APOC2 (ENSBBBG00000015655)	ENSBBBG00000007562
Bos	ANCESTRAL SPECIES	4	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00960000187132	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913
Bos_a	ANCESTRAL SPECIES	16	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00960000187132.a	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913
Domestic yak	MODERN SPECIES	12	FBXO46 (ENSBGRG00000020994)	QPCTL (ENSBGRG00000021008)	SNRPD2 (ENSBGRG00000021083)	GIPR (ENSBGRG00000021139)	EML2 (ENSBGRG00000021380)	GPR4 (ENSBGRG00000021757)	OPA3 (ENSBGRG00000021767)	VASP (ENSBGRG00000021830)	PPM1N (ENSBGRG00000021919)	RTN2 (ENSBGRG00000022025)	FOSB (ENSBGRG00000022164)	ERCC1 (ENSBGRG00000022455)	POLR1G (ENSBGRG00000022695)	ERCC2 (ENSBGRG00000022782)	KLC3 (ENSBGRG00000023303)	CKM (ENSBGRG00000023521) ##22	MARK4 (ENSBGRG00000023592)	ENSBGRG00000023668	ENSBGRG00000023691 ##27	ENSBGRG00000023718	ENSBGRG00000023907	ENSBGRG00000023919	ENSBGRG00000023928	BLOC1S3 (ENSBGRG00000023950)	TRAPPC6A (ENSBGRG00000023978)	NKPD1 (ENSBGRG00000024051)	PPP1R37 (ENSBGRG00000024063)	ENSBGRG00000024101	ZNF296 (ENSBGRG00000024122)	CLASRP (ENSBGRG00000024145)	RELB (ENSBGRG00000024301)
Wild yak	MODERN SPECIES	1165	SNRPD2 (ENSBMUG00000020701)	GIPR (ENSBMUG00000020673)	EML2 (ENSBMUG00000020571)	GPR4 (ENSBMUG00000020549)	OPA3 (ENSBMUG00000020538)	VASP (ENSBMUG00000020524)	PPM1N (ENSBMUG00000020510)	RTN2 (ENSBMUG00000020491)	FOSB (ENSBMUG00000020469)	ERCC1 (ENSBMUG00000020439)	POLR1G (ENSBMUG00000020360)	PPP1R13L (ENSBMUG00000020329)	ENSBMUG00000020297	ENSBMUG00000020276	KLC3 (ENSBMUG00000020258)	CKM (ENSBMUG00000020235) ##22	MARK4 (ENSBMUG00000020222)	EXOC3L2 (ENSBMUG00000020174) ##27	ENSBMUG00000020157	ENSBMUG00000020148	TRAPPC6A (ENSBMUG00000020134)	NKPD1 (ENSBMUG00000020111)	PPP1R37 (ENSBMUG00000020094)	ENSBMUG00000020021	ZNF296 (ENSBMUG00000020016)	CLASRP (ENSBMUG00000020005)	RELB (ENSBMUG00000019964)	ENSBMUG00000019950	CLPTM1 (ENSBMUG00000019939)	ENSBMUG00000019921	ENSBMUG00000019911
Bos_b	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00960000187132	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Hybrid Bos Indicus	MODERN SPECIES	9	FBXO46 (ENSBIXG00005003957)	QPCTL (ENSBIXG00005003947)	SNRPD2 (ENSBIXG00005006167)	GIPR (ENSBIXG00005023073)	EML2 (ENSBIXG00005022960)	ENSBIXG00005022571	VASP (ENSBIXG00005022552)	PPM1N (ENSBIXG00005022517)	RTN2 (ENSBIXG00005022451)	FOSB (ENSBIXG00005022400)	ERCC1 (ENSBIXG00005022223)	POLR1G (ENSBIXG00005007166)	PPP1R13L (ENSBIXG00005022122)	ERCC2 (ENSBIXG00005022070)	KLC3 (ENSBIXG00005022032)	CKM (ENSBIXG00005022002) ##22	MARK4 (ENSBIXG00005021933)	EXOC3L2 (ENSBIXG00005021785) ##27	ENSBIXG00005003661	ENSBIXG00005005749	ENSBIXG00005021698	NKPD1 (ENSBIXG00005021646)	PPP1R37 (ENSBIXG00005021626)	GEMIN7 (ENSBIXG00005021602)	ZNF296 (ENSBIXG00005003640)	CLASRP (ENSBIXG00005000003)	RELB (ENSBIXG00005021511)	CLPTM1 (ENSBIXG00005021324)	ENSBIXG00005007369	ENSBIXG00005021223	APOE (ENSBIXG00005021185)
Cow	MODERN SPECIES	9	SNRPD2 (ENSBTAG00000012177)	GIPR (ENSBTAG00000005527)	EML2 (ENSBTAG00000015764)	GPR4 (ENSBTAG00000018398)	OPA3 (ENSBTAG00000019605)	ENSBTAG00000049026	VASP (ENSBTAG00000019604)	PPM1N (ENSBTAG00000014187)	RTN2 (ENSBTAG00000008185)	FOSB (ENSBTAG00000008182)	ERCC1 (ENSBTAG00000017355)	POLR1G (ENSBTAG00000023601)	PPP1R13L (ENSBTAG00000020689)	ERCC2 (ENSBTAG00000002072)	KLC3 (ENSBTAG00000002070)	CKM (ENSBTAG00000013921) ##22	MARK4 (ENSBTAG00000002682)	ENSBTAG00000030882	EXOC3L2 (ENSBTAG00000015836) ##27	ENSBTAG00000052172	BLOC1S3 (ENSBTAG00000007070)	TRAPPC6A (ENSBTAG00000007065)	NKPD1 (ENSBTAG00000020074)	PPP1R37 (ENSBTAG00000018834)	GEMIN7 (ENSBTAG00000010668)	ZNF296 (ENSBTAG00000013702)	CLASRP (ENSBTAG00000013697)	RELB (ENSBTAG00000038428)	CLPTM1 (ENSBTAG00000020560)	APOC2 (ENSBTAG00000020558)	APOC4 (ENSBTAG00000020556)
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Microbat	MODERN SPECIES	2310																CKM (ENSMLUG00000012265) ##22	MARK4 (ENSMLUG00000012252)
Greater horseshoe bat	MODERN SPECIES	6	QPCTL (ENSRFEG00010008930)	ENSRFEG00010008870	GIPR (ENSRFEG00010008371)	EML2 (ENSRFEG00010007875)	GPR4 (ENSRFEG00010007847)	OPA3 (ENSRFEG00010007786)	VASP (ENSRFEG00010007608)	RTN2 (ENSRFEG00010007128)	FOSB (ENSRFEG00010006945)	ERCC1 (ENSRFEG00010006811)	POLR1G (ENSRFEG00010006762)	PPP1R13L (ENSRFEG00010006729)	ERCC2 (ENSRFEG00010006620)	KLC3 (ENSRFEG00010006568)	ENSRFEG00010006537	CKM (ENSRFEG00010006512) ##22	MARK4 (ENSRFEG00010006484)	EXOC3L2 (ENSRFEG00010006452) ##27	ENSRFEG00010006416	ENSRFEG00010006401	BLOC1S3 (ENSRFEG00010006387)	TRAPPC6A (ENSRFEG00010006338)	NKPD1 (ENSRFEG00010006308)	PPP1R37 (ENSRFEG00010006262)	GEMIN7 (ENSRFEG00010006242)	ZNF296 (ENSRFEG00010006216)	CLASRP (ENSRFEG00010006108)	RELB (ENSRFEG00010006009)	CLPTM1 (ENSRFEG00010005927)	ENSRFEG00010005861	ENSRFEG00010005837
Megabat	MODERN SPECIES	470	SNRPD2 (ENSPVAG00000001345)	GIPR (ENSPVAG00000001343)	EML2 (ENSPVAG00000001340)	GPR4 (ENSPVAG00000001339)	OPA3 (ENSPVAG00000001338)	VASP (ENSPVAG00000001336)	ENSPVAG00000001335	PPM1N (ENSPVAG00000001334)	RTN2 (ENSPVAG00000001333)	FOSB (ENSPVAG00000001332)	ERCC1 (ENSPVAG00000001331)	POLR1G (ENSPVAG00000001330)	PPP1R13L (ENSPVAG00000001329)	ERCC2 (ENSPVAG00000001328)	KLC3 (ENSPVAG00000001327)	CKM (ENSPVAG00000001326) ##22	MARK4 (ENSPVAG00000001325)	ENSPVAG00000001324 ##27
Equus	ANCESTRAL SPECIES	1	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Donkey	MODERN SPECIES	18	QPCTL (ENSEASG00005014212)	ENSEASG00005014210	GIPR (ENSEASG00005014208)	EML2 (ENSEASG00005014204)	GPR4 (ENSEASG00005028869)	ENSEASG00005028592	VASP (ENSEASG00005014200)	ENSEASG00005037630	RTN2 (ENSEASG00005014192)	FOSB (ENSEASG00005025490)	ERCC1 (ENSEASG00005014190)	POLR1G (ENSEASG00005014188)	PPP1R13L (ENSEASG00005014187)	ERCC2 (ENSEASG00005013856)	KLC3 (ENSEASG00005013822)	CKM (ENSEASG00005004121) ##22	ENSEASG00005013818	EXOC3L2 (ENSEASG00005013809) ##27	ENSEASG00005013803	ENSEASG00005013800	BLOC1S3 (ENSEASG00005025055)	ENSEASG00005038539	NKPD1 (ENSEASG00005013789)	PPP1R37 (ENSEASG00005013782)	GEMIN7 (ENSEASG00005033816)	ZNF296 (ENSEASG00005024434)	CLASRP (ENSEASG00005013755)	RELB (ENSEASG00005013746)	CLPTM1 (ENSEASG00005013737)	APOC2 (ENSEASG00005033261)	APOC4 (ENSEASG00005013735)
Horse	MODERN SPECIES	1	QPCTL (ENSECAG00000009265)	SNRPD2 (ENSECAG00000007824)	GIPR (ENSECAG00000015923)	EML2 (ENSECAG00000018032)	GPR4 (ENSECAG00000045714)	OPA3 (ENSECAG00000014284)	VASP (ENSECAG00000007818)	PPM1N (ENSECAG00000005419)	RTN2 (ENSECAG00000022897)	FOSB (ENSECAG00000018002)	ERCC1 (ENSECAG00000011385)	POLR1G (ENSECAG00000032490)	PPP1R13L (ENSECAG00000024828)	ERCC2 (ENSECAG00000036849)	KLC3 (ENSECAG00000022555)	CKM (ENSECAG00000022433) ##22	MARK4 (ENSECAG00000000359)	EXOC3L2 (ENSECAG00000023895) ##27	ENSECAG00000023091	BLOC1S3 (ENSECAG00000048765)	TRAPPC6A (ENSECAG00000018946)	NKPD1 (ENSECAG00000033188)	PPP1R37 (ENSECAG00000012840)	GEMIN7 (ENSECAG00000005915)	ZNF296 (ENSECAG00000011640)	CLASRP (ENSECAG00000009232)	RELB (ENSECAG00000020898)	CLPTM1 (ENSECAG00000017326)	APOC2 (ENSECAG00000014224)	ENSECAG00000046002	APOE (ENSECAG00000008236)
Carnivora	ANCESTRAL SPECIES	2	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Felidae	ANCESTRAL SPECIES	7	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
Panthera	ANCESTRAL SPECIES	20	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b	ENSGT00390000003308.a
Tiger	MODERN SPECIES	535	BFSP1 (ENSPTIG00000019816)	PCSK2 (ENSPTIG00000018656)	OTOR (ENSPTIG00000018477)	OPA3 (ENSPTIG00000018436)	VASP (ENSPTIG00000017955)	PPM1N (ENSPTIG00000016985)	RTN2 (ENSPTIG00000016394)	FOSB (ENSPTIG00000015177)	ERCC1 (ENSPTIG00000014519)	POLR1G (ENSPTIG00000014078)	PPP1R13L (ENSPTIG00000012853)	ENSPTIG00000012675	ENSPTIG00000011864	KLC3 (ENSPTIG00000011057)	ENSPTIG00000000507	CKM (ENSPTIG00000010161) ##22	ENSPTIG00000009796	ENSPTIG00000009092	ENSPTIG00000008710 ##27	TRAPPC6A (ENSPTIG00000007805)	GEMIN7 (ENSPTIG00000000303)	ENSPTIG00000006698	RELB (ENSPTIG00000004316)	CLPTM1 (ENSPTIG00000000945)	APOC2 (ENSPTIG00000020728)	ENSPTIG00000020606	ENSPTIG00000020485	TOMM40 (ENSPTIG00000019953)
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00950000182929.B.b
leopard	MODERN SPECIES	103	QPCTL (ENSPPRG00000011974)	GIPR (ENSPPRG00000011461)	EML2 (ENSPPRG00000010239)	GPR4 (ENSPPRG00000015030)	OPA3 (ENSPPRG00000009051)	ENSPPRG00000008284	VASP (ENSPPRG00000008102)	PPM1N (ENSPPRG00000005053)	RTN2 (ENSPPRG00000004264)	FOSB (ENSPPRG00000004058)	ERCC1 (ENSPPRG00000003321)	POLR1G (ENSPPRG00000001954)	PPP1R13L (ENSPPRG00000001485)	ERCC2 (ENSPPRG00000000507)	KLC3 (ENSPPRG00000022836)	CKM (ENSPPRG00000023495) ##22	ENSPPRG00000023648	MARK4 (ENSPPRG00000023795)	EXOC3L2 (ENSPPRG00000024467) ##27	BLOC1S3 (ENSPPRG00000014754)	TRAPPC6A (ENSPPRG00000024693)	PPP1R37 (ENSPPRG00000018798)	GEMIN7 (ENSPPRG00000014746)	ZNF296 (ENSPPRG00000018193)	CLASRP (ENSPPRG00000017479)	RELB (ENSPPRG00000013193)	CLPTM1 (ENSPPRG00000012168)	APOC2 (ENSPPRG00000010972)	ENSPPRG00000010783	ENSPPRG00000010651	APOE (ENSPPRG00000010588)
lion	MODERN SPECIES	15	AP2A1 (ENSPLOG00000007711)	TSKS (ENSPLOG00000007572)	CPT1C (ENSPLOG00000007450)	ENSPLOG00000007411	PRMT1 (ENSPLOG00000007276)	BCL2L12 (ENSPLOG00000007139)	IRF3 (ENSPLOG00000007056)	SCAF1 (ENSPLOG00000007025)	RRAS (ENSPLOG00000006992)	PRR12 (ENSPLOG00000006927)	PRRG2 (ENSPLOG00000006869)	NOSIP (ENSPLOG00000006833)	PPP1R13L (ENSPLOG00000006777)	ERCC2 (ENSPLOG00000006584)	KLC3 (ENSPLOG00000006444)	CKM (ENSPLOG00000006406) ##22	MARK4 (ENSPLOG00000006356)	EXOC3L2 (ENSPLOG00000006300) ##27	TRAPPC6A (ENSPLOG00000006245)	NKPD1 (ENSPLOG00000006206)	PPP1R37 (ENSPLOG00000006078)	ZNF296 (ENSPLOG00000006046)	CLASRP (ENSPLOG00000005979)	RELB (ENSPLOG00000005791)	CLPTM1 (ENSPLOG00000005697)	APOC2 (ENSPLOG00000005670)	ENSPLOG00000005642	APOE (ENSPLOG00000005599)	TOMM40 (ENSPLOG00000005561)	NECTIN2 (ENSPLOG00000005523)	BCAM (ENSPLOG00000005452)
Cat	MODERN SPECIES	246	QPCTL (ENSFCAG00000012476)	SNRPD2 (ENSFCAG00000022530)	GIPR (ENSFCAG00000007332)	EML2 (ENSFCAG00000007330)	GPR4 (ENSFCAG00000031197)	OPA3 (ENSFCAG00000030677)	VASP (ENSFCAG00000007424)	PPM1N (ENSFCAG00000007428)	RTN2 (ENSFCAG00000007430)	FOSB (ENSFCAG00000030571)	ERCC1 (ENSFCAG00000007439)	POLR1G (ENSFCAG00000043166)	PPP1R13L (ENSFCAG00000033518)	ERCC2 (ENSFCAG00000002679)	KLC3 (ENSFCAG00000002676)	CKM (ENSFCAG00000002672) ##22	MARK4 (ENSFCAG00000002671)	EXOC3L2 (ENSFCAG00000004804) ##27	BLOC1S3 (ENSFCAG00000036089)	TRAPPC6A (ENSFCAG00000027259)	NKPD1 (ENSFCAG00000042894)	PPP1R37 (ENSFCAG00000001768)	GEMIN7 (ENSFCAG00000043198)	ZNF296 (ENSFCAG00000040249)	CLASRP (ENSFCAG00000033941)	RELB (ENSFCAG00000025715)	CLPTM1 (ENSFCAG00000004797)	ENSFCAG00000018891	APOC4 (ENSFCAG00000004795)	ENSFCAG00000033939	TOMM40 (ENSFCAG00000004793)
Caniformia	ANCESTRAL SPECIES	1	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Canidae	ANCESTRAL SPECIES	5	ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275.d	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Canis_lupus	ANCESTRAL SPECIES		ENSGT00390000003107.b	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275.d	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Dingo	MODERN SPECIES	125	QPCTL (ENSCAFG00020003527)	ENSCAFG00020003532	GIPR (ENSCAFG00020003543)	EML2 (ENSCAFG00020003779)	GPR4 (ENSCAFG00020011193)	OPA3 (ENSCAFG00020011195)	ENSCAFG00020011202	PPM1N (ENSCAFG00020011228)	RTN2 (ENSCAFG00020011246)	FOSB (ENSCAFG00020011287)	ERCC1 (ENSCAFG00020011298)	POLR1G (ENSCAFG00020011342)	PPP1R13L (ENSCAFG00020011344)	ERCC2 (ENSCAFG00020011390)	KLC3 (ENSCAFG00020012214)	CKM (ENSCAFG00020012218) ##22	MARK4 (ENSCAFG00020012237)	EXOC3L2 (ENSCAFG00020012244) ##27	BLOC1S3 (ENSCAFG00020012264)	TRAPPC6A (ENSCAFG00020012265)	NKPD1 (ENSCAFG00020012275)	PPP1R37 (ENSCAFG00020012294)	GEMIN7 (ENSCAFG00020012296)	ZNF296 (ENSCAFG00020012298)	ENSCAFG00020012303	RELB (ENSCAFG00020012320)	CLPTM1 (ENSCAFG00020012406)	APOC2 (ENSCAFG00020012410)	ENSCAFG00020012416	APOC1 (ENSCAFG00020012420)	APOE (ENSCAFG00020012422)
Dog	MODERN SPECIES		QPCTL (ENSCAFG00845004866)	GIPR (ENSCAFG00845004894)	EML2 (ENSCAFG00845004953)	GPR4 (ENSCAFG00845005035)	OPA3 (ENSCAFG00845005041)	VASP (ENSCAFG00845005094)	PPM1N (ENSCAFG00845005133)	RTN2 (ENSCAFG00845005157)	FOSB (ENSCAFG00845005191)	ERCC1 (ENSCAFG00845005241)	POLR1G (ENSCAFG00845005277)	PPP1R13L (ENSCAFG00845005302)	ENSCAFG00845005341	ERCC2 (ENSCAFG00845005380)	KLC3 (ENSCAFG00845005524)	CKM (ENSCAFG00845005622) ##22	MARK4 (ENSCAFG00845005692)	EXOC3L2 (ENSCAFG00845005764) ##27	BLOC1S3 (ENSCAFG00845005799)	TRAPPC6A (ENSCAFG00845005834)	NKPD1 (ENSCAFG00845005872)	PPP1R37 (ENSCAFG00845005905)	GEMIN7 (ENSCAFG00845005934)	ZNF296 (ENSCAFG00845005956)	CLASRP (ENSCAFG00845006006)	RELB (ENSCAFG00845006117)	CLPTM1 (ENSCAFG00845006342)	APOC2 (ENSCAFG00845006579)	ENSCAFG00845006618	APOC1 (ENSCAFG00845006666)	APOE (ENSCAFG00845006705)
Red fox	MODERN SPECIES	101	EML2 (ENSVVUG00000003317)	GPR4 (ENSVVUG00000004011)	OPA3 (ENSVVUG00000004015)	ENSVVUG00000004018	VASP (ENSVVUG00000004020)	PPM1N (ENSVVUG00000004040)	RTN2 (ENSVVUG00000004056)	FOSB (ENSVVUG00000004082)	ERCC1 (ENSVVUG00000004091)	CD3EAP (ENSVVUG00000004115)	ENSVVUG00000004117	ENSVVUG00000004122	ENSVVUG00000004131	ERCC2 (ENSVVUG00000004141)	KLC3 (ENSVVUG00000004168)	CKM (ENSVVUG00000004188) ##22	ENSVVUG00000004198	MARK4 (ENSVVUG00000004378)	ENSVVUG00000008107	BLOC1S3 (ENSVVUG00000008112)	TRAPPC6A (ENSVVUG00000008116)	ENSVVUG00000008141	PPP1R37 (ENSVVUG00000008143)	GEMIN7 (ENSVVUG00000008153)	ZNF296 (ENSVVUG00000008157)	CLASRP (ENSVVUG00000008161)	RELB (ENSVVUG00000008209)	CLPTM1 (ENSVVUG00000008275)	APOC2 (ENSVVUG00000008286)	APOC4 (ENSVVUG00000008290)	APOC1 (ENSVVUG00000008301)
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667.k	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00390000017608.b	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667.k	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
American mink	MODERN SPECIES	135	SNRPD2 (ENSNVIG00000009077)	GIPR (ENSNVIG00000009001)	EML2 (ENSNVIG00000008942)	GPR4 (ENSNVIG00000008931)	OPA3 (ENSNVIG00000008924)	VASP (ENSNVIG00000008886)	PPM1N (ENSNVIG00000008818)	RTN2 (ENSNVIG00000008748)	FOSB (ENSNVIG00000008682)	ERCC1 (ENSNVIG00000008650)	POLR1G (ENSNVIG00000008637)	PPP1R13L (ENSNVIG00000008571)	ERCC2 (ENSNVIG00000008419)	KLC3 (ENSNVIG00000008354)	ENSNVIG00000008342	CKM (ENSNVIG00000008333) ##22	MARK4 (ENSNVIG00000008204)	EXOC3L2 (ENSNVIG00000008145) ##27	BLOC1S3 (ENSNVIG00000008133)	TPC6A (ENSNVIG00000008111)	NKPD1 (ENSNVIG00000008090)	PPP1R37 (ENSNVIG00000008044)	GEMI7 (ENSNVIG00000008011)	ZNF296 (ENSNVIG00000008007)	CLASRP (ENSNVIG00000007850)	RELB (ENSNVIG00000007731)	CLPTM1 (ENSNVIG00000007696)	APOC2 (ENSNVIG00000007673)	ENSNVIG00000007657	ENSNVIG00000007641	APOE (ENSNVIG00000007616)
Ferret	MODERN SPECIES	291	FBXO46 (ENSMPUG00000019374)	QPCTL (ENSMPUG00000005727)	SNRPD2 (ENSMPUG00000005733)	GIPR (ENSMPUG00000005756)	EML2 (ENSMPUG00000005855)	OPA3 (ENSMPUG00000005872)	VASP (ENSMPUG00000005880)	PPM1N (ENSMPUG00000005895)	RTN2 (ENSMPUG00000005903)	FOSB (ENSMPUG00000005914)	ERCC1 (ENSMPUG00000005947)	POLR1G (ENSMPUG00000005965)	PPP1R13L (ENSMPUG00000005975)	ERCC2 (ENSMPUG00000005989)	KLC3 (ENSMPUG00000006006)	CKM (ENSMPUG00000006049) ##22	MARK4 (ENSMPUG00000006053)	BLOC1S3 (ENSMPUG00000019376)	TRAPPC6A (ENSMPUG00000006065)	NKPD1 (ENSMPUG00000006117)	PPP1R37 (ENSMPUG00000006125)	GEMIN7 (ENSMPUG00000019379)	ENSMPUG00000006134	ENSMPUG00000006143	CLPTM1 (ENSMPUG00000006148)	APOC2 (ENSMPUG00000006161)	ENSMPUG00000006178	APOC1 (ENSMPUG00000006201)	APOE (ENSMPUG00000006228)	TOMM40 (ENSMPUG00000006267)	ENSMPUG00000006278
Ursidae	ANCESTRAL SPECIES	30	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000186179	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667.k	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00950000186185	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Giant Panda	MODERN SPECIES	1958																ENSAMEG00000028139 ##22
Ursus	ANCESTRAL SPECIES	13	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000186179	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584.a	ENSGT00950000182929.B.b	ENSGT00390000003308.a	ENSGT00940000161167	ENSGT00940000161038	ENSGT00940000162336
Polar bear	MODERN SPECIES	115	GIPR (ENSUMAG00000023684)	EML2 (ENSUMAG00000023616)	GPR4 (ENSUMAG00000023598)	OPA3 (ENSUMAG00000023597)	ENSUMAG00000023595	VASP (ENSUMAG00000023593)	ENSUMAG00000023592	RTN2 (ENSUMAG00000023591)	FOSB (ENSUMAG00000023589)	ERCC1 (ENSUMAG00000023588)	POLR1G (ENSUMAG00000023587)	ENSUMAG00000023583	ERCC2 (ENSUMAG00000023492)	ENSUMAG00000023480	ENSUMAG00000023478	CKM (ENSUMAG00000023476) ##22	MARK4 (ENSUMAG00000023463)	ENSUMAG00000023455	TRAPPC6A (ENSUMAG00000023452)	GEMIN7 (ENSUMAG00000023443)	CLASRP (ENSUMAG00000023392)	RELB (ENSUMAG00000023342)	CLPTM1 (ENSUMAG00000023328)	ENSUMAG00000023321	APOC1 (ENSUMAG00000023318)	NECTIN2 (ENSUMAG00000023265)	BCAM (ENSUMAG00000023202)	CBLC (ENSUMAG00000023192)	BCL3 (ENSUMAG00000023187)	CEACAM16 (ENSUMAG00000023183)	CEACAM19 (ENSUMAG00000023173)
American black bear	MODERN SPECIES	353				OPA3 (ENSUAMG00000020211)	VASP (ENSUAMG00000020210)	PPM1N (ENSUAMG00000020209)	RTN2 (ENSUAMG00000020208)	FOSB (ENSUAMG00000020207)	ERCC1 (ENSUAMG00000020205)	POLR1G (ENSUAMG00000020204)	PPP1R13L (ENSUAMG00000020203)	ENSUAMG00000020202	ERCC2 (ENSUAMG00000019562)	KLC3 (ENSUAMG00000019549)	ENSUAMG00000019548	CKM (ENSUAMG00000019547) ##22	MARK4 (ENSUAMG00000019418)	EXOC3L2 (ENSUAMG00000019417) ##27
Eulipotyphla	ANCESTRAL SPECIES	477															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555
Hedgehog	MODERN SPECIES	8959															ERCC2 (ENSEEUG00000010569)	CKM (ENSEEUG00000010522) ##22	MARK4 (ENSEEUG00000010403)
Common shrew	MODERN SPECIES	7100																ENSSARG00000007880 ##22	ENSSARG00000007858
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584
Xenarthra	ANCESTRAL SPECIES	769											ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555
Armadillo	MODERN SPECIES	459											ERCC1 (ENSDNOG00000040226)	POLR1G (ENSDNOG00000041816)	PPP1R13L (ENSDNOG00000033571)	ERCC2 (ENSDNOG00000010904)	KLC3 (ENSDNOG00000049555)	CKM (ENSDNOG00000005772) ##22	MARK4 (ENSDNOG00000041432)
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00390000017608	ENSGT00940000161988	ENSGT00940000153887.B	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000162694	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000162356	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000163913	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000160667	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000007913	ENSGT00390000015914	ENSGT00390000011584	ENSGT00950000182929.B.b
Hyrax	MODERN SPECIES	7108																CKM (ENSPCAG00000016007) ##22	ENSPCAG00000015918
Elephant	MODERN SPECIES	375	SIX5 (ENSLAFG00000030935)	QPCTL (ENSLAFG00000004208)	SNRPD2 (ENSLAFG00000004205)	FBXO46 (ENSLAFG00000027244)	GIPR (ENSLAFG00000027053)	EML2 (ENSLAFG00000031949)	ENSLAFG00000028620	ENSLAFG00000027518	VASP (ENSLAFG00000026860)	RTN2 (ENSLAFG00000028220)	FOSB (ENSLAFG00000008834)	ERCC1 (ENSLAFG00000001829)	POLR1G (ENSLAFG00000001827)	PPP1R13L (ENSLAFG00000001823)	ERCC2 (ENSLAFG00000006888)	CKM (ENSLAFG00000022873) ##22	MARK4 (ENSLAFG00000011196)	ENSLAFG00000032528 ##27	ENSLAFG00000030383	TRAPPC6A (ENSLAFG00000012046)	NKPD1 (ENSLAFG00000012043)	PPP1R37 (ENSLAFG00000018620)	GEMIN7 (ENSLAFG00000016380)	ZNF296 (ENSLAFG00000029107)	CLASRP (ENSLAFG00000008075)	RELB (ENSLAFG00000008071)	CLPTM1 (ENSLAFG00000008066)	APOC2 (ENSLAFG00000027825)	ENSLAFG00000014178	APOC1 (ENSLAFG00000014179)	APOE (ENSLAFG00000014329)
Sauria	ANCESTRAL SPECIES	34	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00390000003107.b	ENSGT00530000064222.a	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Lepidosauria	ANCESTRAL SPECIES	143							ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27
Episquamata	ANCESTRAL SPECIES	21	ENSGT00390000014835	ENSGT00940000161313	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01000000219624	ENSGT00940000162064.c.a.a.a.a.b.a	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00450000040362	ENSGT00390000011275	ENSGT00940000164086	ENSGT00940000160655
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000161203	ENSGT00390000014835	ENSGT00940000161313	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01000000219624	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00390000011275	ENSGT00940000164086	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900	ENSGT00950000182767.b.a.b.b.b
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000160922	ENSGT00940000161203	ENSGT00390000014835	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01000000219624	ENSGT00390000011275	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900	ENSGT00390000007046.b.a.b	ENSGT00390000012368
Elapidae_a	ANCESTRAL SPECIES	71	ENSGT00940000161203	ENSGT00390000014835	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT01100000264206	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01000000219624	ENSGT00390000011275	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000155736.D.d	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900	ENSGT00390000007046.b.a.b	ENSGT00390000012368
Acanthophiinae	ANCESTRAL SPECIES	69			ENSGT00940000161203.m	ENSGT00390000014835	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01100000264206	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00390000011275	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b	ENSGT00940000162522	ENSGT00940000160655	ENSGT00940000159399	ENSGT00390000007046.b.a.b	ENSGT00390000012368	ENSGT00940000160033.b
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	806															ENSNSUG00000005019	ENSNSUG00000005018 ##22	ENSNSUG00000005017	ENSNSUG00000005016	ENSNSUG00000005015	ENSNSUG00000005014 ##27
Mainland tiger snake	MODERN SPECIES	807																ENSNSUG00000005023 ##22	ENSNSUG00000005024	ENSNSUG00000005026	ENSNSUG00000005028	ENSNSUG00000005029	ENSNSUG00000005031 ##27
Mainland tiger snake	MODERN SPECIES	809																ENSNSUG00000005048 ##22	ENSNSUG00000005053	ENSNSUG00000005057	ENSNSUG00000005060	ENSNSUG00000005061	ENSNSUG00000005062 ##27
Mainland tiger snake	MODERN SPECIES	808															ENSNSUG00000005045	ENSNSUG00000005040 ##22	ENSNSUG00000005039	ENSNSUG00000005038	ENSNSUG00000005037	ENSNSUG00000005035 ##27
Eastern brown snake	MODERN SPECIES	170	ENSPTXG00000011309	SYCN (ENSPTXG00000011315)	PAK4 (ENSPTXG00000011316)	ACP7 (ENSPTXG00000011317)	FBXO27 (ENSPTXG00000011318)	EML2 (ENSPTXG00000011349)	GPR4 (ENSPTXG00000014693)	OPA3 (ENSPTXG00000014694)	VASP (ENSPTXG00000014696)	ENSPTXG00000014697	FOSB (ENSPTXG00000014699)	ENSPTXG00000014701	PPP1R13L (ENSPTXG00000014702)	ERCC2 (ENSPTXG00000014706)	ENSPTXG00000014736 #18	CKM (ENSPTXG00000014737) ##22	ENSPTXG00000014738	MARK4 (ENSPTXG00000014739)	EXOC3L2 (ENSPTXG00000014741) ##27	ERCC1 (ENSPTXG00000014742)	ENSPTXG00000014743	ENSPTXG00000014744	ENSPTXG00000014757	ENSPTXG00000016538	ENSPTXG00000016540	ENSPTXG00000017664	CYP2F1 (ENSPTXG00000017665)	ENSPTXG00000017667	RAB4B (ENSPTXG00000017668)	SNRPA (ENSPTXG00000017669)	ACTMAP (ENSPTXG00000017670)
Blue-lipped sea krait	MODERN SPECIES	2070									ENSLLTG00000001353	ENSLLTG00000001342	FOSB (ENSLLTG00000001328)	PPP1R13L (ENSLLTG00000001309)	ERCC2 (ENSLLTG00000001275)	ENSLLTG00000001248 #18	ENSLLTG00000001234	CKM (ENSLLTG00000001202) ##22	MARK4 (ENSLLTG00000001168)	EXOC3L2 (ENSLLTG00000001143) ##27	ENSLLTG00000001126	ERCC1 (ENSLLTG00000001111)
Indian cobra	MODERN SPECIES	11	LRFN3 (ENSNNAG00000010351)	SYCN (ENSNNAG00000010388)	ENSNNAG00000010396	ACP7 (ENSNNAG00000010434)	FBXO27 (ENSNNAG00000010453)	EML2 (ENSNNAG00000011004)	GPR4 (ENSNNAG00000017267)	ENSNNAG00000017275	VASP (ENSNNAG00000017281)	ENSNNAG00000017289	ENSNNAG00000017295	FOSB (ENSNNAG00000017301)	PPP1R13L (ENSNNAG00000017307)	ERCC2 (ENSNNAG00000017319)	ENSNNAG00000017333 #18	CKM (ENSNNAG00000017344) ##22	MARK4 (ENSNNAG00000017376)	EXOC3L2 (ENSNNAG00000017458) ##27	ENSNNAG00000017468	ERCC1 (ENSNNAG00000017477)	ENSNNAG00000017487	ENSNNAG00000017573	ENSNNAG00000018314	ENSNNAG00000017917	ENSNNAG00000018320	ENSNNAG00000018326	EGLN2 (ENSNNAG00000018329)	RAB4B (ENSNNAG00000018334)	SNRPA (ENSNNAG00000018339)	ACTMAP (ENSNNAG00000018342)	ITPKC (ENSNNAG00000018346)
Lizard	MODERN SPECIES	2148																ENSACAG00000005396 ##22
Laterata	ANCESTRAL SPECIES	17	ENSGT00390000014835	ENSGT00940000161313	ENSGT00940000159792.C	ENSGT00390000015485	ENSGT00940000161841	ENSGT00940000156265.x.b.a.a.b	ENSGT00940000153887.B	ENSGT01100000263537.b.b.c.a.a	ENSGT00390000009795	ENSGT00940000156765	ENSGT00940000156070.b	ENSGT00940000160599	ENSGT00940000160358	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01070000253869	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01000000219624	ENSGT00940000155736.D.d	ENSGT00940000162064.c.a.a.a.a.b.a	ENSGT00940000162064.c.a.a.a.a.a	ENSGT00940000161670	ENSGT00940000162064.c.a.a.a.b	ENSGT00940000162064.c.a.b	ENSGT00940000162064.c.b.b	ENSGT00940000164086	ENSGT00940000160655	ENSGT00940000159399	ENSGT00940000165900
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000009299	ENSPMRG00000009277	ENSPMRG00000009265	ENSPMRG00000009257	ENSPMRG00000009248	ENSPMRG00000009241	ENSPMRG00000009239	ENSPMRG00000009231	ENSPMRG00000009222	ENSPMRG00000009219	ENSPMRG00000009213	ERCC1 (ENSPMRG00000009198)	ENSPMRG00000009193	EXOC3L2 (ENSPMRG00000009183) ##27	ENSPMRG00000009180	ENSPMRG00000015349 ##22	MARK4 (ENSPMRG00000015345)	ENSPMRG00000015340	ENSPMRG00000015331 ##22	ENSPMRG00000015321 #18	ERCC2 (ENSPMRG00000015033)	ENSPMRG00000014958	PPP1R13L (ENSPMRG00000014946)	ENSPMRG00000014936	FOSB (ENSPMRG00000014931)	RTN2 (ENSPMRG00000014914)	ENSPMRG00000014904	ENSPMRG00000014898	ENSPMRG00000014895	ENSPMRG00000014887	ENSPMRG00000014882
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000014858	OPA3 (ENSPMRG00000014861)	ENSPMRG00000014868	ENSPMRG00000014882	ENSPMRG00000014887	ENSPMRG00000014895	ENSPMRG00000014898	ENSPMRG00000014904	RTN2 (ENSPMRG00000014914)	FOSB (ENSPMRG00000014931)	ENSPMRG00000014936	PPP1R13L (ENSPMRG00000014946)	ENSPMRG00000014958	ERCC2 (ENSPMRG00000015033)	ENSPMRG00000015321 #18	ENSPMRG00000015331 ##22	ENSPMRG00000015340	MARK4 (ENSPMRG00000015345)	ENSPMRG00000015349 ##22	ENSPMRG00000009180	EXOC3L2 (ENSPMRG00000009183) ##27	ENSPMRG00000009193	ERCC1 (ENSPMRG00000009198)	ENSPMRG00000009213	ENSPMRG00000009219	ENSPMRG00000009222	ENSPMRG00000009231	ENSPMRG00000009239	ENSPMRG00000009241	ENSPMRG00000009248	ENSPMRG00000009257
Argentine black and white tegu	MODERN SPECIES	153																CKM (ENSSMRG00000000242) ##22	ENSSMRG00000000273	MARK4 (ENSSMRG00000000288)	EXOC3L2 (ENSSMRG00000000356) ##27	ENSSMRG00000000403	ENSSMRG00000000421	ENSSMRG00000000455	ENSSMRG00000000471	ENSSMRG00000000500	ENSSMRG00000001578	ENSSMRG00000002229	ENSSMRG00000002479	ENSSMRG00000002480	ENSSMRG00000002485	RAB4B (ENSSMRG00000002487)	ENSSMRG00000002488
tuatara	MODERN SPECIES	624	ENSSPUG00000010601	ENSSPUG00000010612	ENSSPUG00000010627	ENSSPUG00000010645	ENSSPUG00000010659	ENSSPUG00000010669	PPP1R37 (ENSSPUG00000010678)	GEMIN7 (ENSSPUG00000010715)	CLASRP (ENSSPUG00000010734)	RELB (ENSSPUG00000010794)	CLPTM1 (ENSSPUG00000010814)	ENSSPUG00000010842	ERCC1 (ENSSPUG00000010856)	PPP1R13L (ENSSPUG00000010875)	ERCC2 (ENSSPUG00000010890)	CKM (ENSSPUG00000010970) ##22	ENSSPUG00000010983	MARK4 (ENSSPUG00000010995)	EXOC3L2 (ENSSPUG00000011049) ##27	EML2 (ENSSPUG00000011075)	OPA3 (ENSSPUG00000011122)	VASP (ENSSPUG00000011133)	ENSSPUG00000011151	ENSSPUG00000011163	ENSSPUG00000011187	ENSSPUG00000011196	ENSSPUG00000011225	ENSSPUG00000011236	ENSSPUG00000011241	ENSSPUG00000011252	ACP7 (ENSSPUG00000011268)
Archelosauria	ANCESTRAL SPECIES	33			ENSGT00940000163913	ENSGT00390000008756	ENSGT00390000012948.a	ENSGT00650000093443.x	ENSGT00940000157454	ENSGT00390000018039	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000154133.B	ENSGT00950000183135.A.a
Archosauria	ANCESTRAL SPECIES	62						ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156765	ENSGT00390000009795	ENSGT00530000064222.a	ENSGT00390000003107.b
Aves	ANCESTRAL SPECIES	62						ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156765	ENSGT00390000009795	ENSGT00530000064222.a	ENSGT00390000003107.b
African ostrich	MODERN SPECIES	375															ERCC2 (ENSSCUG00000000746)	CKM (ENSSCUG00000000749) ##22	ENSSCUG00000000752	ENSSCUG00000000756
Neognathae	ANCESTRAL SPECIES	49	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000156119.v	ENSGT00550000075063	ENSGT00940000160719	ENSGT00940000163335	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877
Galloanserae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b ##22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00950000182772.A.a.a.b ##22
Japanese quail	MODERN SPECIES	151															ENSCJPG00005000570	ENSCJPG00005000564 ##22
Neognathae_b	ANCESTRAL SPECIES	46	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000156119.v	ENSGT00550000075063	ENSGT00940000160719	ENSGT00940000163335	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877
Neognathae_c	ANCESTRAL SPECIES	94															ENSGT00950000182970.C	ENSGT00950000182772.A.a.a.b ##22	ENSGT01030000234877
Golden eagle	MODERN SPECIES	88													SUPT5H (ENSACCG00020016499)	TIMM50 (ENSACCG00020016532)	ERCC2 (ENSACCG00020016536)	CKM (ENSACCG00020016538) ##22	ENSACCG00020016543	ENSACCG00020016546
Passeriformes	ANCESTRAL SPECIES	159																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Passeriformes_d	ANCESTRAL SPECIES	152																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Passeriformes_g	ANCESTRAL SPECIES	153																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Passeroidea	ANCESTRAL SPECIES	162																ENSGT00950000182772.A.a.a.b ##22	ENSGT00390000017045
Zebra finch	MODERN SPECIES	80												RYR1 (ENSTGUG00000026818)	ENSTGUG00000024026	ENSTGUG00000018858	ENSTGUG00000020063	CKM (ENSTGUG00000025089) ##22	ENSTGUG00000021327	ENSTGUG00000024998	ENSTGUG00000026245	ENSTGUG00000021543	ENSTGUG00000018840	ENSTGUG00000024711	ENSTGUG00000025753	ENSTGUG00000019200	ENSTGUG00000028831	ENSTGUG00000028993	ENSTGUG00000028329	ENSTGUG00000028966	ENSTGUG00000028466	ENSTGUG00000018937	ENSTGUG00000021349
Medium ground finch	MODERN SPECIES	676																ENSGFOG00000010952 ##22
Cryptodira	ANCESTRAL SPECIES	35		ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00940000157454	ENSGT01100000263552.h.b.t.f	ENSGT00650000093443.x	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01090000261113	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00390000010750.b	ENSGT00390000000190	ENSGT00940000156783	ENSGT00940000157969	ENSGT00940000161850
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00940000160230	ENSGT00940000153892.A	ENSGT00390000018039	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000157454	ENSGT01100000263552.h.b.t.f	ENSGT00650000093443.x	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006.l.a	ENSGT00940000161006.l.b	ENSGT00940000154133.B
Testudinidae	ANCESTRAL SPECIES	36					ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000157454	ENSGT01100000263552.h.b.t.f	ENSGT00650000093443.x	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000160551	ENSGT00950000182970.C	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT00940000156265.x.b.a.a.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000156070.b	ENSGT00940000156765	ENSGT00390000009795	ENSGT01100000263537.b.b.c.a.a	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006.l.a	ENSGT00940000162008
Goode s thornscrub tortoise	MODERN SPECIES	134	CLPTM1 (ENSGEVG00005013296)	ENSGEVG00005013272	ERCC1 (ENSGEVG00005013251)	ENSGEVG00005013236	PPP1R37 (ENSGEVG00005013199)	ENSGEVG00005013133	NKPD1 (ENSGEVG00005013100)	ENSGEVG00005013072	TRAPPC6A (ENSGEVG00005013046)	BLOC1S3 (ENSGEVG00005016094)	ENSGEVG00005016063	PPP1R13L (ENSGEVG00005015922)	ERCC2 (ENSGEVG00005015881)	ENSGEVG00005015173 #18	ENSGEVG00005015014	CKM (ENSGEVG00005014945) ##22	MARK4 (ENSGEVG00005014914)	EXOC3L2 (ENSGEVG00005014812) ##27	ENSGEVG00005014723	ENSGEVG00005014700	FOSB (ENSGEVG00005014621)	ENSGEVG00005014552	ENSGEVG00005014505	ENSGEVG00005014415	VASP (ENSGEVG00005014375)	OPA3 (ENSGEVG00005014359)	GPR4 (ENSGEVG00005014339)	EML2 (ENSGEVG00005010764)	ENSGEVG00005009904	ENSGEVG00005009827	FBXO46 (ENSGEVG00005009811)
Abingdon island giant tortoise	MODERN SPECIES	2009	ERCC1 (ENSCABG00000007991)	PPP1R37 (ENSCABG00000007999)	ENSCABG00000008004	NKPD1 (ENSCABG00000008005)	ENSCABG00000008007	TRAPPC6A (ENSCABG00000008009)	BLOC1S3 (ENSCABG00000008011)	ENSCABG00000008015	ENSCABG00000008023	ENSCABG00000008025	PPP1R13L (ENSCABG00000008029)	ENSCABG00000008033	ERCC2 (ENSCABG00000008035)	ENSCABG00000008039	ENSCABG00000008040	CKM (ENSCABG00000008042) ##22	MARK4 (ENSCABG00000008045)	EXOC3L2 (ENSCABG00000008050) ##27	ENSCABG00000008051	ENSCABG00000008052	ENSCABG00000008054	ENSCABG00000008055	FOSB (ENSCABG00000008056)	ENSCABG00000008057	ENSCABG00000008059	ENSCABG00000008061	ENSCABG00000008063	EML2 (ENSCABG00000008161)	ENSCABG00000013274	QPCTL (ENSCABG00000013296)	ENSCABG00000013500
Emydidae	ANCESTRAL SPECIES	77	ENSGT00390000018039	ENSGT00940000153892.A	ENSGT00940000160230	ENSGT00530000063461.B	ENSGT00510000048522	ENSGT00390000011275	ENSGT00450000040362	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.v	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b ##22	ENSGT00940000159555	ENSGT01030000234613.b.b ##27	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358	ENSGT00940000160599	ENSGT00940000153887.B	ENSGT00530000064222.a	ENSGT00390000003107.b	ENSGT00940000161006.l.a.b	ENSGT00860000136302	ENSGT00450000040421	ENSGT00940000162120	ENSGT00940000166203
Three-toed box turtle	MODERN SPECIES	252	RELB (ENSTMTG00000007484)	CLASRP (ENSTMTG00000007459)	ENSTMTG00000007445	ENSTMTG00000007364	ENSTMTG00000007324	ENSTMTG00000007285	PPP1R37 (ENSTMTG00000007263)	ENSTMTG00000007108	TRAPPC6A (ENSTMTG00000007076)	ENSTMTG00000007067	ENSTMTG00000007039	ENSTMTG00000007035	PPP1R13L (ENSTMTG00000006938)	ENSTMTG00000006907	ENSTMTG00000006897	CKM (ENSTMTG00000006864) ##22	ENSTMTG00000006854	ENSTMTG00000006830	EXOC3L2 (ENSTMTG00000006808) ##27	ENSTMTG00000006798	FOSB (ENSTMTG00000006785)	ENSTMTG00000006752	EML2 (ENSTMTG00000003755)	ENSTMTG00000003421	ENSTMTG00000003409	QPCTL (ENSTMTG00000003398)	ENSTMTG00000003368	NOVA2 (ENSTMTG00000003357)	MYPOP (ENSTMTG00000003346)	IRF2BP1 (ENSTMTG00000003331)	ENSTMTG00000008031
painted turtle	MODERN SPECIES	974	CLASRP (ENSCPBG00000014391)	RELB (ENSCPBG00000014390)	CLPTM1 (ENSCPBG00000014389)	ENSCPBG00000014387	ERCC1 (ENSCPBG00000014385)	ENSCPBG00000014383	PPP1R37 (ENSCPBG00000014378)	NKPD1 (ENSCPBG00000014375)	ENSCPBG00000014374	TRAPPC6A (ENSCPBG00000014372)	BLOC1S3 (ENSCPBG00000014370)	ENSCPBG00000014369	ENSCPBG00000014368	PPP1R13L (ENSCPBG00000014365)	ENSCPBG00000014363	CKM (ENSCPBG00000014362) ##22	MARK4 (ENSCPBG00000014222)
Cyclostomata	ANCESTRAL SPECIES	1122																ENSGT00950000182772.A.a.a ##22	ENSGT00940000154862.bb #23
Hagfish	MODERN SPECIES	1504	ENSEBUG00000009121	ENSEBUG00000015909	ENSEBUG00000004465	ENSEBUG00000012539	ENSEBUG00000004338	poldip2 (ENSEBUG00000006270)	ENSEBUG00000014917	ENSEBUG00000013527	ENSEBUG00000008599	ENSEBUG00000011063	ENSEBUG00000008970	ENSEBUG00000008954	ENSEBUG00000015674	ENSEBUG00000010543	ENSEBUG00000013421 #20	ckmb (ENSEBUG00000016175) ##22	ENSEBUG00000003878 #23	ENSEBUG00000007491	ENSEBUG00000004172	blcap (ENSEBUG00000015666)	KCNF1 (ENSEBUG00000011427)	SLCO4A1 (ENSEBUG00000005183)	RHOB (ENSEBUG00000002113)	uqcc1 (ENSEBUG00000015220)	ENSEBUG00000013043	ENSEBUG00000003592	ENSEBUG00000000607
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000182772.A.b ##22
Gnathostomata	ANCESTRAL SPECIES	59	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303	ENSGT00950000183075.a.a.a.a	ENSGT00940000160303.b	ENSGT00390000009045	ENSGT00390000000709	ENSGT00940000159420	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00390000008171	ENSGT00940000157560
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303	ENSGT00950000183075.a.a.a.a	ENSGT00940000160303.b	ENSGT00390000009045	ENSGT00390000000709	ENSGT00940000159420	ENSGT00530000063876.a	ENSGT00530000063629.a	ENSGT00940000155793	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00390000008171	ENSGT00940000157560.e	ENSGT00390000005794	ENSGT00550000074910	ENSGT00940000157359	ENSGT00550000074815	ENSGT00940000179241	ENSGT00940000159967	ENSGT00940000159171	ENSGT00940000157390	ENSGT00390000001960	ENSGT00390000011270	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000158456
Actinopterygii	ANCESTRAL SPECIES	311							ENSGT00940000154922.a	ENSGT00940000154922.b	ENSGT00940000161321	ENSGT00550000074953	ENSGT00530000063629.a	ENSGT00940000155793.a.b	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00390000008171	ENSGT00940000157560.e
Neopterygii	ANCESTRAL SPECIES	270				ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.a.a	ENSGT00940000154922.a	ENSGT00940000154922.b	ENSGT00940000161321	ENSGT00550000074953	ENSGT00530000063629.a	ENSGT00940000155793.a.b	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	326					ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.a.a	ENSGT00940000154922.b.v.b	ENSGT00940000154922.b.u.b	ENSGT00940000161321	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22
Clupeocephala	ANCESTRAL SPECIES	63													ENSGT00400000022158.a	ENSGT00940000157908.g	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764	ENSGT00940000153244.A	ENSGT00950000183209.b.a.a	ENSGT00390000003866.a.a.e	ENSGT00530000064165.b	ENSGT00940000157952	ENSGT00940000180095	ENSGT00530000069620	ENSGT00390000018683	ENSGT00390000008459	ENSGT00940000157388.b.a	ENSGT00390000006176
Euteleosteomorpha	ANCESTRAL SPECIES	41	ENSGT00940000167342	ENSGT00390000006712	ENSGT00940000155423	ENSGT00940000155483.e.b	ENSGT00390000015299.a.b.b.b.c	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Protacanthopterygii	ANCESTRAL SPECIES	149	ENSGT00940000155423	ENSGT00390000006619	ENSGT00940000163420	ENSGT00940000155483.f	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764	ENSGT00950000183209.b.a.a	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b
Salmoninae	ANCESTRAL SPECIES	600											ENSGT00940000165311.b.n.a.b.b	ENSGT00550000074953.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b
Huchen	MODERN SPECIES	22	HNRNPLL (ENSHHUG00000019834)	srsf7b (ENSHHUG00000019883)	sos1 (ENSHHUG00000019930)	MAP4K3 (ENSHHUG00000020240)	tmem178a (ENSHHUG00000021050)	slc8a1a (ENSHHUG00000021054)	pgap4 (ENSHHUG00000021084)	ENSHHUG00000021092	ENSHHUG00000021106	ENSHHUG00000021115	ENSHHUG00000021120	kcnh1b (ENSHHUG00000021127)	rcor3 (ENSHHUG00000021153)	TRAF5 (ENSHHUG00000021183)	ENSHHUG00000021193	ENSHHUG00000021198 ##22	ENSHHUG00000021206	ptk7a (ENSHHUG00000021378)	soul4 (ENSHHUG00000021422)	ENSHHUG00000021436	ENSHHUG00000021572	tmem264 (ENSHHUG00000021919)	ENSHHUG00000021922
Salmoninae_a	ANCESTRAL SPECIES	121	ENSGT00400000022158.b.d.a.b	ENSGT00400000022158.b.d.a.a	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00550000074953.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000157837.d.h	ENSGT00400000022158.b.d.b	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00550000074953.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b
River trout	MODERN SPECIES	31	ENSSTUG00000016683	srfa (ENSSTUG00000016700)	eif4a3 (ENSSTUG00000016753)	ATL2 (ENSSTUG00000016870)	HNRNPLL (ENSSTUG00000017450)	srsf7b (ENSSTUG00000017606)	sos1 (ENSSTUG00000017688)	MAP4K3 (ENSSTUG00000019647)	tmem178a (ENSSTUG00000019846)	slc8a1a (ENSSTUG00000019863)	ENSSTUG00000019990	PEX6 (ENSSTUG00000020005)	kcnh1b (ENSSTUG00000020055)	rcor3 (ENSSTUG00000020360)	TRAF5 (ENSSTUG00000020552)	ENSSTUG00000020578 ##22	MARK1 (ENSSTUG00000020607)	ptk7a (ENSSTUG00000021011)	soul4 (ENSSTUG00000021853)	ENSSTUG00000021884	ENSSTUG00000021984	tmem264 (ENSSTUG00000022916)	rrp36 (ENSSTUG00000022923)	sipa1l2 (ENSSTUG00000022948)	EGLN1 (ENSSTUG00000023339)	ENSSTUG00000023359	ENSSTUG00000023372	ENSSTUG00000023399	ENSSTUG00000023410	ENSSTUG00000023463	ENSSTUG00000023473
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000114607	ENSSSAG00000000256	if4a3 (ENSSSAG00000000352)	ATL2 (ENSSSAG00000112408)	ENSSSAG00000000980	SRSF7 (ENSSSAG00000001092)	SOS1 (ENSSSAG00000001130)	MAP4K3 (ENSSSAG00000001497)	TMEM178A (ENSSSAG00000107044)	slc8a1a (ENSSSAG00000001870)	ENSSSAG00000001921	ENSSSAG00000001974	KCNH1 (ENSSSAG00000002000)	rcor3 (ENSSSAG00000002310)	TRAF5 (ENSSSAG00000002812)	ENSSSAG00000002826 ##22	ENSSSAG00000081823	ENSSSAG00000002991	ptk7a (ENSSSAG00000004365)	soul4 (ENSSSAG00000099662)	klc4 (ENSSSAG00000005429)	ENSSSAG00000037481	rrp36 (ENSSSAG00000041096)	ENSSSAG00000041186	ENSSSAG00000081907	ENSSSAG00000042803	ENSSSAG00000111546	ENSSSAG00000043147	jag1a (ENSSSAG00000043209)	s5a2 (ENSSSAG00000044549)	psen2 (ENSSSAG00000044602)
Oncorhynchus	ANCESTRAL SPECIES	101	ENSGT00940000157837.d.g.a	ENSGT00400000022158.b.d.a.b	ENSGT00400000022158.b.d.a.a	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.a	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.b	ENSGT00940000155965.b.e.b.b.a.b.a.a.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.b.b.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	108	ENSGT00940000157837.d.g.a	ENSGT00400000022158.b.d.a.b	ENSGT00940000155037.d	ENSGT00940000155710.b.t	ENSGT01030000234642.a.b.b.d.a.g.b.a	ENSGT00910000144115.b.ec.a	ENSGT00940000155423.p	ENSGT00940000155483.e.b	ENSGT00940000155483.f.gb.b	ENSGT00390000015299.a.b.b.b.d.a.d	ENSGT00940000155129.B.i	ENSGT00940000165311.b.n.a.b.b	ENSGT00940000155793.a.a.j	ENSGT00940000154196.b.e.a	ENSGT00940000160954.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.d	ENSGT00940000157908.h.d	ENSGT00940000165109.d	ENSGT00940000164764.a.a	ENSGT00950000183209.b.a.a.v.b	ENSGT00390000003866.a.a.f	ENSGT00530000064271	ENSGT00940000157388.b.b.b	ENSGT00940000155704.bc.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.a	ENSGT00940000154308.D.c.a.b.a.a.a.a.b.a.a.b	ENSGT00940000155965.b.e.b.b.a.b.a.a.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.b.b.b.a.a.b
Chinook salmon	MODERN SPECIES	25									ENSOTSG00005009210	tmem178a (ENSOTSG00005009209)	slc8a1a (ENSOTSG00005009205)	ENSOTSG00005009201	kcnh1b (ENSOTSG00005008988)	rcor3 (ENSOTSG00005008961)	TRAF5 (ENSOTSG00005008959)	ENSOTSG00005008957 ##22	ENSOTSG00005008471	ptk7a (ENSOTSG00005008214)	soul4 (ENSOTSG00005008213)	ENSOTSG00005008110	ENSOTSG00005003609	tmem264 (ENSOTSG00005003575)	rrp36 (ENSOTSG00005003572)	sipa1l2 (ENSOTSG00005003229)	ENSOTSG00005003204	ENSOTSG00005003201	ENSOTSG00005003198	ENSOTSG00005003191	ENSOTSG00005003189	ENSOTSG00005003187	ENSOTSG00005003184
Coho salmon	MODERN SPECIES	12	EIF4A3 (ENSOKIG00005012140)	ATL2 (ENSOKIG00005011953)	ENSOKIG00005011908	HNRNPLL (ENSOKIG00005011415)	srsf7b (ENSOKIG00005011370)	SOS1 (ENSOKIG00005009100)	ENSOKIG00005008997	MAP4K3 (ENSOKIG00005008976)	TMEM178A (ENSOKIG00005008957)	slc8a1a (ENSOKIG00005008899)	ENSOKIG00005008854	ENSOKIG00005008801	KCNH1 (ENSOKIG00005008781)	rcor3 (ENSOKIG00005008711)	TRAF5 (ENSOKIG00005008668)	ENSOKIG00005008656 ##22	MARK1 (ENSOKIG00005008476)	ptk7a (ENSOKIG00005006380)	soul4 (ENSOKIG00005006264)	ENSOKIG00005006007	ENSOKIG00005008795	tmem264 (ENSOKIG00005008637)	rrp36 (ENSOKIG00005008622)	SIPA1L2 (ENSOKIG00005008310)	EGLN1 (ENSOKIG00005008238)	ENSOKIG00005008228	ENSOKIG00005008223	ENSOKIG00005008195	ENSOKIG00005008187	ENSOKIG00005008174	ENSOKIG00005008158
Rainbow trout	MODERN SPECIES	4	ATL2 (ENSOMYG00000016069)	ENSOMYG00000014920	SRSF7 (ENSOMYG00000014842)	SOS1 (ENSOMYG00000011078)	MAP4K3 (ENSOMYG00000010418)	ENSOMYG00000067680	TMEM178A (ENSOMYG00000010403)	ncx (ENSOMYG00000010351)	ENSOMYG00000052178	ENSOMYG00000010193	ENSOMYG00000065639	KCNH1 (ENSOMYG00000009951)	rcor3 (ENSOMYG00000009784)	TRAF5 (ENSOMYG00000009559)	ENSOMYG00000058723	ENSOMYG00000009523 ##22	ENSOMYG00000009435	ENSOMYG00000055394	ENSOMYG00000060588	ptk7a (ENSOMYG00000008510)	soul4 (ENSOMYG00000007872)	ENSOMYG00000007845	ENSOMYG00000053772	ENSOMYG00000007562	ENSOMYG00000006968	ENSOMYG00000064456	ENSOMYG00000053828	ENSOMYG00000006945	ENSOMYG00000006521	ENSOMYG00000005737	ENSOMYG00000005769
Northern pike	MODERN SPECIES	8	slc8a1a (ENSELUG00000017795)	ENSELUG00000029888	pgap4 (ENSELUG00000017687)	ENSELUG00000017680	tpcn3 (ENSELUG00000017670)	ENSELUG00000033076	tpcn3 (ENSELUG00000017586)	ENSELUG00000017559	slc22a7a (ENSELUG00000017464)	ENSELUG00000017447	kcnh1b (ENSELUG00000017368)	rcor3 (ENSELUG00000017304)	TRAF5 (ENSELUG00000017257)	ENSELUG00000017232	ENSELUG00000017205	ENSELUG00000017198 ##22	MARK1 (ENSELUG00000017156)	ENSELUG00000034072	ENSELUG00000017023	egln1 (ENSELUG00000016998)	sipa1l2 (ENSELUG00000016909)	rrp36 (ENSELUG00000016840)	tmem264 (ENSELUG00000016822)	ENSELUG00000016765	ENSELUG00000016543	soul4 (ENSELUG00000016467)	ptk7a (ENSELUG00000016427)	jag1a (ENSELUG00000016285)	ENSELUG00000016145	srd5a2a (ENSELUG00000016118)	psen2 (ENSELUG00000001236)
Acanthomorphata	ANCESTRAL SPECIES	226															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000155710.b	ENSGT00940000155037	ENSGT00400000022158.b	ENSGT00940000157837.d	ENSGT00940000153566.b	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00950000182886.b.a.b	ENSGT00940000157923	ENSGT00390000008808.q	ENSGT00940000156258.f.b	ENSGT01100000263524.G.f.b
Euacanthomorphacea	ANCESTRAL SPECIES	188															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f
Percomorphaceae	ANCESTRAL SPECIES	152															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000167432	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000167432	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Atherinomorphae	ANCESTRAL SPECIES	38													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000166495	ENSGT00770000121010	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000153578.A.f	ENSGT00390000017589
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000166495	ENSGT00770000121010	ENSGT00530000067736.a	ENSGT00940000177040	ENSGT00390000002789	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000153578.A.f	ENSGT00390000017589
Indian medaka	MODERN SPECIES	21	ENSOMEG00000007765	NID1 (ENSOMEG00000007786)	tbce (ENSOMEG00000007846)	rbm34 (ENSOMEG00000007902)	tomm20b (ENSOMEG00000007937)	IRF2BP2 (ENSOMEG00000007959)	ENSOMEG00000008013	ENSOMEG00000008032	ENSOMEG00000008040	H2BC7 (ENSOMEG00000008050)	ENSOMEG00000008062	ENSOMEG00000008067	kcnh1b (ENSOMEG00000008109)	rcor3 (ENSOMEG00000000661)	ENSOMEG00000008226	ENSOMEG00000008260 ##22	ENSOMEG00000008324	ATL2 (ENSOMEG00000008420)	HNRNPLL (ENSOMEG00000008453)	slc22a7a (ENSOMEG00000008469)	ENSOMEG00000000642	ENSOMEG00000000920	JAG1 (ENSOMEG00000008569)	ENSOMEG00000008587	RRP36 (ENSOMEG00000008623)	tp53bp2b (ENSOMEG00000008685) ##15	gtpbp2b (ENSOMEG00000008753)	ENSOMEG00000008808	ENSOMEG00000008851	ENSOMEG00000008855	ENSOMEG00000008861
Javanese ricefish	MODERN SPECIES		tomm20b (ENSOJAG00000014723)	IRF2BP2 (ENSOJAG00000014745)	ENSOJAG00000014768	ENSOJAG00000014797	ENSOJAG00000014813	ENSOJAG00000014835	ENSOJAG00000014850	ENSOJAG00000014861	ENSOJAG00000014893	kcnh1b (ENSOJAG00000014926)	ENSOJAG00000015018	ENSOJAG00000015045	ENSOJAG00000015060	ENSOJAG00000015082	rcor3 (ENSOJAG00000015116)	ENSOJAG00000015267 ##22	ENSOJAG00000015364	ENSOJAG00000016656	ENSOJAG00000016669	HNRNPLL (ENSOJAG00000016717)	slc22a7a (ENSOJAG00000017051)	ENSOJAG00000017062	ENSOJAG00000017069	JAG1 (ENSOJAG00000017134)	RRP36 (ENSOJAG00000017700)	ENSOJAG00000017712 #15	tp53bp2b (ENSOJAG00000017756) ##15	gtpbp2b (ENSOJAG00000003655)	ENSOJAG00000003702	ENSOJAG00000003721	ENSOJAG00000003778
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00940000166495	ENSGT00770000121010	ENSGT00530000067736	ENSGT00940000177040	ENSGT00390000002789	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b	ENSGT00390000011856	ENSGT00940000160206.f.a.a.a.b.a.b	ENSGT00940000153578.A.f
Chinese medaka	MODERN SPECIES	744	XPO1 (ENSOSIG00000015991)	ENSOSIG00000016472	cct4 (ENSOSIG00000016484)	ENSOSIG00000016545	ENSOSIG00000017026	ero1b (ENSOSIG00000017048)	GPR137B (ENSOSIG00000017526)	NID1 (ENSOSIG00000017538)	tbce (ENSOSIG00000017552)	rbm34 (ENSOSIG00000017558)	tomm20b (ENSOSIG00000017562)	IRF2BP2 (ENSOSIG00000017566)	kcnh1b (ENSOSIG00000017571)	rcor3 (ENSOSIG00000017647)	ENSOSIG00000017650	ENSOSIG00000017656 ##22	ENSOSIG00000017859	ENSOSIG00000020386	HNRNPLL (ENSOSIG00000020394)	ATL2 (ENSOSIG00000020415)	slc22a7a (ENSOSIG00000020477)	ENSOSIG00000020480	ENSOSIG00000020481	JAG1 (ENSOSIG00000020506)	RRP36 (ENSOSIG00000020536)	tp53bp2b (ENSOSIG00000020538) ##15	gtpbp2b (ENSOSIG00000020543)	ENSOSIG00000020549	ENSOSIG00000020550	ENSOSIG00000020552	ENSOSIG00000020553
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000026620	ENSORLG00000001277	NID1 (ENSORLG00000001273)	tbce (ENSORLG00000001253)	rbm34 (ENSORLG00000001221)	tomm20b (ENSORLG00000029910)	ENSORLG00000001201	ENSORLG00000029583	ENSORLG00000030596	hist1h2a11 (ENSORLG00000024975)	ENSORLG00000024338	ENSORLG00000022684	ENSORLG00000001160	rcor3 (ENSORLG00000001117)	ENSORLG00000001109	ENSORLG00000001087 ##22	ENSORLG00000001076	ENSORLG00000001049	HNRNPLL (ENSORLG00000001005)	slc22a7a (ENSORLG00000000981)	ENSORLG00000025624	ENSORLG00000030418	ENSORLG00000000972	rrp36 (ENSORLG00000029500)	tp53bp2b (ENSORLG00000000954) ##15	gtpbp2b (ENSORLG00000000909)	ENSORLG00000001338	ENSORLG00000023254	ENSORLG00000000157	ENSORLG00000030472	DDX5 (ENSORLG00000000866)
Cyprinodontiformes	ANCESTRAL SPECIES	38													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096
Aplocheiloidei	ANCESTRAL SPECIES	238															ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000264278	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000175262
Mangrove rivulus	MODERN SPECIES	438															ENSKMAG00000012583	ENSKMAG00000012567 ##22	ATL2 (ENSKMAG00000012500)	ENSKMAG00000012466	ENSKMAG00000012446	HNRNPLL (ENSKMAG00000012417)	ENSKMAG00000012411
Ovalentaria_B	ANCESTRAL SPECIES	72										ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148.g.b
Cichlidae	ANCESTRAL SPECIES	107													ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621
Pseudocrenilabrinae	ANCESTRAL SPECIES	106													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22
Nile tilapia	MODERN SPECIES	18	pgap4 (ENSONIG00000015988)	ENSONIG00000037310	lgalsla (ENSONIG00000031320)	slc29a2 (ENSONIG00000015993)	ENSONIG00000042072	ENSONIG00000042676	vps54 (ENSONIG00000015995)	ENSONIG00000031488	ugp2a (ENSONIG00000016000)	mdh1aa (ENSONIG00000016001)	ENSONIG00000031309	ENSONIG00000001826	KCNH1 (ENSONIG00000016131)	rcor3 (ENSONIG00000016128)	ENSONIG00000016125	ENSONIG00000016119 ##22	ENSONIG00000016118	ENSONIG00000028658	USP34 (ENSONIG00000012445)	commd1 (ENSONIG00000012443)	b3gnt2a (ENSONIG00000021044)	ENSONIG00000012442	gtpbp2b (ENSONIG00000011595)	ENSONIG00000010894	ENSONIG00000037919	ENSONIG00000016476
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	33													ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000155636.b.a	ENSGT00940000153463.b.b ##15	ENSGT00530000064271
Lyretail cichlid	MODERN SPECIES	461	ENSNBRG00000008728	ENSNBRG00000008705	mdh1aa (ENSNBRG00000008660)	vps54 (ENSNBRG00000008596)	ENSNBRG00000008568	slc29a2 (ENSNBRG00000008535)	ENSNBRG00000008514	MAL (ENSNBRG00000008436)	pgap4 (ENSNBRG00000008419)	ENSNBRG00000008400	tp53bp2b (ENSNBRG00000008370) ##15	ENSNBRG00000008351	kcnh1b (ENSNBRG00000008331)	rcor3 (ENSNBRG00000008291)	ENSNBRG00000008238	ENSNBRG00000008209 ##22	ENSNBRG00000008167	HNRNPLL (ENSNBRG00000008133)	slc22a7a (ENSNBRG00000008097)	ENSNBRG00000008077	tpcn3 (ENSNBRG00000007966)	ENSNBRG00000007920	ENSNBRG00000007904	ENSNBRG00000007895	GRIA2 (ENSNBRG00000007840)	ENSNBRG00000007825	glrba (ENSNBRG00000007773)	ndufs8a (ENSNBRG00000007759)
Haplochromini	ANCESTRAL SPECIES	52	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a ##15	ENSGT00940000153463.b.b.f.b ##15	ENSGT00940000155636.b.a	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00530000064449.A.b.b.t	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a
Burton s mouthbrooder	MODERN SPECIES	1370																ENSHBUG00000015806 ##22	ENSHBUG00000015789	ATL2 (ENSHBUG00000015768)
Haplochromini_A	ANCESTRAL SPECIES	59										ENSGT00940000153463.b.b.f.b ##15	ENSGT00940000155636.b.a	ENSGT01030000235581	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00530000064449.A.b.b.t	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a	ENSGT00940000153463.b.b.f.a ##15	ENSGT00530000064271
Haplochromini_B	ANCESTRAL SPECIES	47	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a ##15	ENSGT00940000155636.b.a	ENSGT01030000235581	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00530000064449.A.b.b.t	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00390000013419	ENSGT01100000263495.A.a.a	ENSGT00490000044642.a.a.a.a.a.a.d.a.b.b.d.b.d.a	ENSGT00940000156950.b	ENSGT00940000156344.a	ENSGT00390000003049.b.a
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005014782	ENSMZEG00005014815	ENSMZEG00005014819	ENSMZEG00005014834	ENSMZEG00005014843	ENSMZEG00005014851	ENSMZEG00005014867	ENSMZEG00005014879	ENSMZEG00005014887	ENSMZEG00005014897	tp53bp2b (ENSMZEG00005014935) ##15	gtpbp2b (ENSMZEG00005014948)	kcnh1b (ENSMZEG00005014960)	rcor3 (ENSMZEG00005014972)	ENSMZEG00005014986	ENSMZEG00005015001 ##22	ENSMZEG00005015018	ENSMZEG00005015030	HNRNPLL (ENSMZEG00005015058)	slc22a7a (ENSMZEG00005015069)	ENSMZEG00005015082	ENSMZEG00005015086	tpcn3 (ENSMZEG00005015092)	ENSMZEG00005015107	saraf (ENSMZEG00005015121)	ENSMZEG00005015126	ENSMZEG00005015130	gria2a (ENSMZEG00005015135)	glrba (ENSMZEG00005015153)	ENSMZEG00005015164	ndufs8a (ENSMZEG00005015172)
Eastern happy	MODERN SPECIES	18	ugp2a (ENSACLG00000014321)	vps54 (ENSACLG00000014277)	ENSACLG00000014223	slc29a2 (ENSACLG00000014184)	lgalsla (ENSACLG00000014174)	MAL (ENSACLG00000014152)	pgap4 (ENSACLG00000014146)	ENSACLG00000014002	RRP36 (ENSACLG00000013982)	tp53bp2b (ENSACLG00000013896) ##15	gtpbp2b (ENSACLG00000013857)	ENSACLG00000013848	kcnh1b (ENSACLG00000013777)	rcor3 (ENSACLG00000013414)	ENSACLG00000013405	ENSACLG00000013398 ##22	ENSACLG00000013383	ENSACLG00000013380	ENSACLG00000013354	HNRNPLL (ENSACLG00000013350)	slc22a7a (ENSACLG00000013341)	ENSACLG00000013339	ENSACLG00000013337	tpcn3 (ENSACLG00000013326)	ENSACLG00000013305	saraf (ENSACLG00000013300)	ENSACLG00000013291	ENSACLG00000013289	ENSACLG00000013286	gria2a (ENSACLG00000013254)	ENSACLG00000012969
P. nyererei	MODERN SPECIES	484	ugp2a (ENSPNYG00000018323)	vps54 (ENSPNYG00000018242)	ENSPNYG00000018201	slc29a2 (ENSPNYG00000018182)	lgalsla (ENSPNYG00000018161)	MAL (ENSPNYG00000018076)	pgap4 (ENSPNYG00000018057)	ENSPNYG00000018043	RRP36 (ENSPNYG00000018030)	tp53bp2b (ENSPNYG00000017914) ##15	gtpbp2b (ENSPNYG00000017823)	ENSPNYG00000017807	kcnh1b (ENSPNYG00000017778)	rcor3 (ENSPNYG00000017745)	ENSPNYG00000017708	ENSPNYG00000017492 ##22	ENSPNYG00000017395	ENSPNYG00000017349	HNRNPLL (ENSPNYG00000017312)	slc22a7a (ENSPNYG00000017281)	ENSPNYG00000017269	ENSPNYG00000017254	ENSPNYG00000017245	tpcn3 (ENSPNYG00000017131)	ENSPNYG00000017055	saraf (ENSPNYG00000017035)	ENSPNYG00000017026	gria2a (ENSPNYG00000016977)	glrba (ENSPNYG00000016942)
Midas cichlid	MODERN SPECIES	308										ENSACIG00000020308	glrba (ENSACIG00000020321)	ndufs8a (ENSACIG00000020380)	gtpbp2b (ENSACIG00000020526)	tp53bp2b (ENSACIG00000020545) ##15	ENSACIG00000020578	ENSACIG00000020628 ##22	ENSACIG00000020642	zgc:163040 (ENSACIG00000020720)	ENSACIG00000020726	ENSACIG00000020732	ENSACIG00000020742	ENSACIG00000020839	ENSACIG00000020849	ENSACIG00000020856	ENSACIG00000020864	ENSACIG00000020873
Pomacentridae	ANCESTRAL SPECIES	228										ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22
Pomacentridae_A	ANCESTRAL SPECIES	340																ENSGT00950000182772.A.b ##22	ENSGT00950000183053.B
Amphiprion	ANCESTRAL SPECIES	58	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.c.b	ENSGT00940000167539	ENSGT00940000155699.a.a	ENSGT00940000155443.d	ENSGT00440000033827	ENSGT00940000155982.e.b	ENSGT00390000013305.a.a.i.a	ENSGT00940000155727.o.b	ENSGT01030000235099	ENSGT00940000156483.h.b	ENSGT00390000008642	ENSGT00940000155634.q.b	ENSGT00940000161252.h	ENSGT00940000157012.l	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.c.a.a.a.a.a.b.b.a.b	ENSGT00950000182772.A.b ##22	ENSGT01100000263513.a.a.b.b.b.b.b.a.a.c.a.a.a.a.a.b.b.a.a	ENSGT00950000183053.B	ENSGT00940000155621	ENSGT00390000011342	ENSGT01090000260098.A	ENSGT01100000263512.b.a	ENSGT00940000157418.a	ENSGT00940000160083	ENSGT00940000157264
Clown anemonefish	MODERN SPECIES	1584													CLDN20 (ENSAOCG00000006074)	ENSAOCG00000006102	ENSAOCG00000006207	ENSAOCG00000006249 ##22	ENSAOCG00000006312	ENSAOCG00000006332
Orange clownfish	MODERN SPECIES	2	asap2b (ENSAPEG00000019427)	cpsf3 (ENSAPEG00000019526)	ADAM17 (ENSAPEG00000019585)	taf1b (ENSAPEG00000019659)	klf11a (ENSAPEG00000019681)	RRM2 (ENSAPEG00000019696)	LGALS8 (ENSAPEG00000019733)	RRM2 (ENSAPEG00000019782)	ENSAPEG00000019830	ZDHHC14 (ENSAPEG00000019844)	tmem242 (ENSAPEG00000019855)	arid1b (ENSAPEG00000019865)	CLDN20 (ENSAPEG00000019931)	ENSAPEG00000019944	ENSAPEG00000019975	ENSAPEG00000020031 ##22	ENSAPEG00000020071	ENSAPEG00000020175	adgrg6 (ENSAPEG00000020208)	vta1 (ENSAPEG00000020283)	gje1a (ENSAPEG00000020329)	NMBR (ENSAPEG00000020347)	ENSAPEG00000020383	SLC35D3 (ENSAPEG00000020411)	pex7 (ENSAPEG00000020438)	ENSAPEG00000020465	ENSAPEG00000020476	ENSAPEG00000020588	ENSAPEG00000020670	ENSAPEG00000020732	ENSAPEG00000020757
Spiny chromis	MODERN SPECIES	2600																ENSAPOG00000003224 ##22	ENSAPOG00000003190
Bicolor damselfish	MODERN SPECIES	1491													kcnh1b (ENSSPAG00000018424)	rcor3 (ENSSPAG00000018384)	ENSSPAG00000018343	ENSSPAG00000018317 ##22	atp6v1g1 (ENSSPAG00000018297)	lmbrd2b (ENSSPAG00000018271)	ENSSPAG00000018242	ENSSPAG00000018222	myo5b (ENSSPAG00000018167)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Eupercaria	ANCESTRAL SPECIES	48														ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Eupecaria_A	ANCESTRAL SPECIES	44														ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Ballan wrasse	MODERN SPECIES	990													rcor3 (ENSLBEG00000023759)	ENSLBEG00000023807	ENSLBEG00000023835	ENSLBEG00000023862 ##22	ENSLBEG00000023904	ENSLBEG00000023950
Eupecaria_B	ANCESTRAL SPECIES	43														ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00530000064271	ENSGT00940000160148	ENSGT01100000263621	ENSGT00940000176873	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13																ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a
Large yellow croaker	MODERN SPECIES	481	lias (ENSLCRG00005004318)	rpl9 (ENSLCRG00005004323)	ENSLCRG00005004361	lias (ENSLCRG00005004366)	ENSLCRG00005004367	pgap4 (ENSLCRG00005004371)	ENSLCRG00005004372	ENSLCRG00005004376	ENSLCRG00005004382	rcor3 (ENSLCRG00005004386)	kcnh1b (ENSLCRG00005004390)	ENSLCRG00005004460	ENSLCRG00005004484	tpcn3 (ENSLCRG00005004505)	ENSLCRG00005004510	ENSLCRG00005004516 ##22	ENSLCRG00005004529	ENSLCRG00005006030	ENSLCRG00005006033	ENSLCRG00005006037	ENSLCRG00005006043	ATL2 (ENSLCRG00005006068)	ENSLCRG00005009369	ENSLCRG00005009997	ENSLCRG00005009999	ENSLCRG00005010000	ENSLCRG00005010002	ENSLCRG00005010005	JAG1 (ENSLCRG00005010017)	prpsap1 (ENSLCRG00005010137)	pik3r6a (ENSLCRG00005010267)
European seabass	MODERN SPECIES	19	ero1b (ENSDLAG00005019324)	ENSDLAG00005026597	ENSDLAG00005018501	ENSDLAG00005018606 ##15	ENSDLAG00005029065	ENSDLAG00005018807	ENSDLAG00005033986	ENSDLAG00005018217	ENSDLAG00005031674	ENSDLAG00005018022	ENSDLAG00005031979	ENSDLAG00005020624	ENSDLAG00005020654	ENSDLAG00005020895	ENSDLAG00005020536	ENSDLAG00005029416 ##22	ENSDLAG00005034665	ENSDLAG00005031488	ENSDLAG00005029866	ENSDLAG00005021886	ENSDLAG00005021903	ENSDLAG00005021927	ENSDLAG00005021966	ENSDLAG00005022023	ENSDLAG00005022058	ENSDLAG00005002952	ENSDLAG00005035039	ENSDLAG00005033140	ENSDLAG00005034954	ENSDLAG00005031829	ENSDLAG00005031957
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES		rrp36 (ENSSAUG00010008862)	ENSSAUG00010008859	ENSSAUG00010008784	ATL2 (ENSSAUG00010003833)	ENSSAUG00010002947	ENSSAUG00010002836 ##22	ENSSAUG00010002821	ENSSAUG00010018600	rcor3 (ENSSAUG00010018547)	kcnh1b (ENSSAUG00010018303)	rcor3 (ENSSAUG00010018291)	ENSSAUG00010018284	ENSSAUG00010018283	ENSSAUG00010018282	ENSSAUG00010018280	ENSSAUG00010018278 ##22	ENSSAUG00010015543	ENSSAUG00010015498	ENSSAUG00010015493	ATL2 (ENSSAUG00010012124)	ENSSAUG00010012077	ENSSAUG00010012075	ENSSAUG00010012072	ENSSAUG00010012063	ENSSAUG00010012060	tpcn3 (ENSSAUG00010011988)	ENSSAUG00010011979	ENSSAUG00010011978	pgap4 (ENSSAUG00010011977)	MAL (ENSSAUG00010011976)	slc8a1a (ENSSAUG00010011942)
Gilthead seabream	MODERN SPECIES		ENSSAUG00010012077	ATL2 (ENSSAUG00010012124)	ENSSAUG00010015493	ENSSAUG00010015498	ENSSAUG00010015543	ENSSAUG00010018278 ##22	ENSSAUG00010018280	ENSSAUG00010018282	ENSSAUG00010018283	ENSSAUG00010018284	rcor3 (ENSSAUG00010018291)	kcnh1b (ENSSAUG00010018303)	rcor3 (ENSSAUG00010018547)	ENSSAUG00010018600	ENSSAUG00010002821	ENSSAUG00010002836 ##22	ENSSAUG00010002947	ATL2 (ENSSAUG00010003833)	ENSSAUG00010008784	ENSSAUG00010008859	rrp36 (ENSSAUG00010008862)	ENSSAUG00010008864	ENSSAUG00010008868	ENSSAUG00010008876	rrp36 (ENSSAUG00010008887)	rrp36 (ENSSAUG00010008889)	ENSSAUG00010008896	ENSSAUG00010008897	ENSSAUG00010008900	ENSSAUG00010008903	ENSSAUG00010008904
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000164305	ENSGT00940000160222.b	ENSGT00940000161420.g.a	ENSGT00940000158857	ENSGT00940000159005.c.b.b	ENSGT00940000173625	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00940000160591.a.a	ENSGT00940000166218
Lumpfish	MODERN SPECIES		ubn1 (ENSCLMG00005005076)	ENSCLMG00005005078	ENSCLMG00005005079	ENSCLMG00005005080	ENSCLMG00005005081	ENSCLMG00005005082	ENSCLMG00005005084	MAL (ENSCLMG00005005086)	pgap4 (ENSCLMG00005005088)	tpcn3 (ENSCLMG00005000024)	ENSCLMG00005000083	PEX6 (ENSCLMG00005000183)	kcnh1b (ENSCLMG00005000486)	rcor3 (ENSCLMG00005000512)	ENSCLMG00005000514	ENSCLMG00005000516 ##22	ENSCLMG00005000590	ATL2 (ENSCLMG00005005599)	ENSCLMG00005010379	ENSCLMG00005010382	ENSCLMG00005010383	ENSCLMG00005010385	ENSCLMG00005010387	ENSCLMG00005010388	ENSCLMG00005010394	ENSCLMG00005011511	tp53bp2b (ENSCLMG00005011513) ##15	ENSCLMG00005011523	ENSCLMG00005011524	ENSCLMG00005011525	ENSCLMG00005011526
Stickleback	MODERN SPECIES	4	ENSGACG00000019559	ENSGACG00000019561	MAL (ENSGACG00000019562)	pgap4 (ENSGACG00000019564)	ENSGACG00000019565	ENSGACG00000019566	ENSGACG00000019567	ENSGACG00000019570	PEX6 (ENSGACG00000019571)	ENSGACG00000019576	kcnh1b (ENSGACG00000019577)	rcor3 (ENSGACG00000019579)	TRAF5 (ENSGACG00000019580)	ENSGACG00000019581	ENSGACG00000019582	ENSGACG00000019583 ##22	ENSGACG00000019584	ENSGACG00000019589	ENSGACG00000019591	ENSGACG00000019595	ENSGACG00000019597	ENSGACG00000019598	JAG1 (ENSGACG00000019600)	RRP36 (ENSGACG00000019603)	mdh1aa (ENSGACG00000019606)	ugp2a (ENSGACG00000019607)	vps54 (ENSGACG00000019620)	ENSGACG00000019626	ENSGACG00000019627	ENSGACG00000019628	ENSGACG00000019631
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Pike perch	MODERN SPECIES	164														ENSSLUG00000011312	ENSSLUG00000011308	ENSSLUG00000011303 ##22	ENSSLUG00000011300	ENSSLUG00000010869	ENSSLUG00000010840	ENSSLUG00000010834	ENSSLUG00000010818	ENSSLUG00000010812	ATL2 (ENSSLUG00000008561)	ENSSLUG00000008355	ENSSLUG00000008328	ENSSLUG00000008318	ENSSLUG00000008312	ENSSLUG00000008272	ENSSLUG00000008258	ENSSLUG00000008254	ENSSLUG00000008251
Channel bull blenny	MODERN SPECIES		ENSCGOG00000001695	uncx4.1 (ENSCGOG00000001415)	ENSCGOG00000001411	ENSCGOG00000001404	ENSCGOG00000001400	MAL (ENSCGOG00000001395)	pgap4 (ENSCGOG00000001394)	tpcn3 (ENSCGOG00000001359)	ENSCGOG00000001346	PEX6 (ENSCGOG00000001344)	rcor3 (ENSCGOG00000001339)	ENSCGOG00000001336	ENSCGOG00000001333	ENSCGOG00000001320	ENSCGOG00000001314	ENSCGOG00000001306 ##22	ENSCGOG00000001301	ATL2 (ENSCGOG00000001232)	HNRNPLL (ENSCGOG00000001147)	ENSCGOG00000001136	ENSCGOG00000001130	ENSCGOG00000001128	JAG1 (ENSCGOG00000000763)	rrp36 (ENSCGOG00000000590)	tp53bp2b (ENSCGOG00000000577) ##15	gtpbp2b (ENSCGOG00000000439)	ENSCGOG00000000413	ENSCGOG00000000346	ENSCGOG00000000329	ero1b (ENSCGOG00000000281)	GPR137B (ENSCGOG00000000251)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Carangaria	ANCESTRAL SPECIES		ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Carangaria_A	ANCESTRAL SPECIES	42	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a.f	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Barramundi perch	MODERN SPECIES	538						kcnh1b (ENSLCAG00010025870)	rcor3 (ENSLCAG00010025864)	ENSLCAG00010025856	ENSLCAG00010025853	ENSLCAG00010025848	ENSLCAG00010025847	ENSLCAG00010025842	ENSLCAG00010025840	ENSLCAG00010025829	ENSLCAG00010025821	ENSLCAG00010025819 ##22	ENSLCAG00010025818
Seriola	ANCESTRAL SPECIES	80	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b.i	ENSGT01100000263529.a.a.a.b.a.a.b.j	ENSGT00950000182772.A.b ##22	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.c.a.b.a.a.b	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a.e	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a
Yellowtail amberjack	MODERN SPECIES	2413																ENSSLDG00000010600 ##22	ENSSLDG00000010678
Greater amberjack	MODERN SPECIES	116	vps54 (ENSSDUG00000017966)	ENSSDUG00000018103	slc29a2 (ENSSDUG00000018120)	lgalsla (ENSSDUG00000018145)	MAL (ENSSDUG00000018154)	pgap4 (ENSSDUG00000018157)	tpcn3 (ENSSDUG00000018167)	ENSSDUG00000018199	ENSSDUG00000018257	kcnh1b (ENSSDUG00000018286)	rcor3 (ENSSDUG00000018349)	ENSSDUG00000018394	ENSSDUG00000018420	ENSSDUG00000018459	ENSSDUG00000018473	ENSSDUG00000018486 ##22	ENSSDUG00000018508	ENSSDUG00000018526	ATL2 (ENSSDUG00000018564)	ENSSDUG00000018598	slc22a7a (ENSSDUG00000018687)	ENSSDUG00000018729	ENSSDUG00000018808	ENSSDUG00000018840	ENSSDUG00000018850	ENSSDUG00000018858	JAG1 (ENSSDUG00000018867)	rrp36 (ENSSDUG00000018924)	tp53bp2b (ENSSDUG00000018935) ##15	gtpbp2b (ENSSDUG00000018968)	ENSSDUG00000019016
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00940000167432	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a
Tongue sole	MODERN SPECIES	19	lsm6 (ENSCSEG00000000423)	pou4f2 (ENSCSEG00000000431)	ednraa (ENSCSEG00000000438)	tmem184c (ENSCSEG00000000445)	prmt9 (ENSCSEG00000000457)	arhgap10 (ENSCSEG00000000467)	nr3c2 (ENSCSEG00000000489)	ENSCSEG00000000500	ENSCSEG00000000510	ENSCSEG00000000546	tpcn3 (ENSCSEG00000000553)	kcnh1b (ENSCSEG00000000566)	rcor3 (ENSCSEG00000000571)	ENSCSEG00000000579	ENSCSEG00000000581	ENSCSEG00000000593 ##22	ATL2 (ENSCSEG00000000888)	ENSCSEG00000000912	slc22a7a (ENSCSEG00000000961)	ENSCSEG00000000968	ENSCSEG00000000970	NID1 (ENSCSEG00000000973)	tbce (ENSCSEG00000000986)	rbm34 (ENSCSEG00000000993)	tomm20b (ENSCSEG00000001016)	ENSCSEG00000001023	gtpbp2b (ENSCSEG00000001025)	ENSCSEG00000001029 ##15	ENSCSEG00000001036 ##15	RRP36 (ENSCSEG00000001039)	JAG1 (ENSCSEG00000001045)
Turbot	MODERN SPECIES	20	VPS54 (ENSSMAG00000021089)	ENSSMAG00000021091	ENSSMAG00000021093	LGALSL (ENSSMAG00000023252)	ENSSMAG00000021095	pgap4 (ENSSMAG00000021151)	ENSSMAG00000035115	ENSSMAG00000029348	ENSSMAG00000021152	ENSSMAG00000034132	ENSSMAG00000021153	ENSSMAG00000021154	ENSSMAG00000021155	rcor3 (ENSSMAG00000021156)	ENSSMAG00000021157	ENSSMAG00000021158 ##22	ENSSMAG00000021159	ENSSMAG00000021160	ENSSMAG00000021161	ENSSMAG00000020991	ENSSMAG00000020988	ENSSMAG00000020964	ENSSMAG00000020962	ENSSMAG00000020961	map1lc3c (ENSSMAG00000020959)	ENSSMAG00000020957	tomm20b (ENSSMAG00000020956)	rbm34 (ENSSMAG00000020955)	tbce (ENSSMAG00000020949)	NID1 (ENSSMAG00000020946)	ENSSMAG00000020945
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Anabantoidei	ANCESTRAL SPECIES		ENSGT00530000063410.a.q.b	ENSGT00940000153464.B.z.a	ENSGT00390000000583	ENSGT00950000183050.b.b.b.a.a.a.b	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT01100000263529.a.a.a.b.a.a.b	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000155710.b	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000154922.a	ENSGT00940000176873	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b ##15	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249
Climbing perch	MODERN SPECIES		MDH1 (ENSATEG00000019629)	ugp2a (ENSATEG00000019600)	VPS54 (ENSATEG00000019507)	ENSATEG00000019473	ENSATEG00000019441	LGALSL (ENSATEG00000019405)	ENSATEG00000025975	pgap4 (ENSATEG00000019383)	ENSATEG00000019275	ENSATEG00000019207	ENSATEG00000019183	rcor3 (ENSATEG00000019156)	ENSATEG00000029533	ENSATEG00000019132	ENSATEG00000019034	ENSATEG00000017567 ##22	ENSATEG00000017437	ENSATEG00000017415	ENSATEG00000017166	ENSATEG00000017111	ENSATEG00000017071	ENSATEG00000017069	ENSATEG00000016970	ENSATEG00000016946	ENSATEG00000016925 ##15	ENSATEG00000016911	ENSATEG00000016900	ENSATEG00000016852	ero1b (ENSATEG00000016786)	ENSATEG00000016758	NID1 (ENSATEG00000016612)
Zig-zag eel	MODERN SPECIES	39								ENSMAMG00000019497	rcor3 (ENSMAMG00000019467)	ENSMAMG00000019441	ENSMAMG00000024723	ENSMAMG00000025963	ENSMAMG00000026229	ENSMAMG00000019416	ENSMAMG00000027675	ENSMAMG00000019318 ##22	ENSMAMG00000019327	ENSMAMG00000019308	ENSMAMG00000019288	ENSMAMG00000019277	ENSMAMG00000019241	ENSMAMG00000026182	ENSMAMG00000019237	ENSMAMG00000019186	ENSMAMG00000019157	ENSMAMG00000018976 ##15	ENSMAMG00000018933	ENSMAMG00000027259	ero1b (ENSMAMG00000018900)	ENSMAMG00000018878	NID1 (ENSMAMG00000018873)
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005008274	ENSMMDG00005008272	ENSMMDG00005008268	ENSMMDG00005008263	slc8a1a (ENSMMDG00005008248)	MAL (ENSMMDG00005008243)	pgap4 (ENSMMDG00005008236)	tpcn3 (ENSMMDG00005008129)	ENSMMDG00005008112	ENSMMDG00005008107	ENSMMDG00005008100	hmox2a (ENSMMDG00005008097)	kcnh1b (ENSMMDG00005008027)	rcor3 (ENSMMDG00005008021)	TRAF5 (ENSMMDG00005008018)	ENSMMDG00005008011 ##22	ENSMMDG00005007995	ATL2 (ENSMMDG00005003996)	HNRNPLL (ENSMMDG00005003890)	srsf7b (ENSMMDG00005003856)	GEMIN6 (ENSMMDG00005003830)	sos1 (ENSMMDG00005002011)	tmem178a (ENSMMDG00005001941)	ENSMMDG00005001934	ENSMMDG00005000366	ENSMMDG00005000068	ENSMMDG00005000067	ENSMMDG00005000066	ENSMMDG00005000065	ENSMMDG00005000064	ENSMMDG00005000063
Otomorpha	ANCESTRAL SPECIES	357		ENSGT00390000006619	ENSGT00940000163420	ENSGT00940000155483.f	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00940000155129.B	ENSGT00940000154987.i.b.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109
Clupeiformes	ANCESTRAL SPECIES	228							ENSGT00940000155129.B	ENSGT00940000154987.i.b.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000154922.a	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00390000011529	ENSGT00940000156048.e.b.a.e	ENSGT00390000003512.r	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000157340.k.a	ENSGT00390000017489.b	ENSGT00950000183213.a.a.a	ENSGT00390000017504	ENSGT00940000160809	ENSGT00940000154186.a.r	ENSGT00940000155337.`b
Atlantic herring	MODERN SPECIES	18						slc8a1a (ENSCHAG00000020326)	mala.1 (ENSCHAG00000020316)	pgap4 (ENSCHAG00000020312)	tpcn3 (ENSCHAG00000020112)	ENSCHAG00000019927	slc22a7a (ENSCHAG00000019896)	ENSCHAG00000019446	kcnh1b (ENSCHAG00000018855)	rcor3 (ENSCHAG00000018326)	ENSCHAG00000018311	ENSCHAG00000018249 ##22	ENSCHAG00000016388	ptk7a (ENSCHAG00000014892)	soul4 (ENSCHAG00000014856)	ENSCHAG00000014828	nup133 (ENSCHAG00000012386)	ACTA1 (ENSCHAG00000012335)	ENSCHAG00000012301	RHOU (ENSCHAG00000012258)	dla (ENSCHAG00000012220)	ENSCHAG00000012152	smdt1b (ENSCHAG00000012144)	pane1 (ENSCHAG00000012136)	mb (ENSCHAG00000012126)	aftpha (ENSCHAG00000012103)	ENSCHAG00000012014
Denticle herring	MODERN SPECIES	13	cep20 (ENSDCDG00000024810)	myh11a (ENSDCDG00000024977)	NDE1 (ENSDCDG00000026270)	CHST1 (ENSDCDG00000026271)	ENSDCDG00000026273	ENSDCDG00000026278	ptger1a (ENSDCDG00000026283)	ilf3a (ENSDCDG00000026289)	acp5a (ENSDCDG00000026295)	SLC44A2 (ENSDCDG00000026310)	ENSDCDG00000026642	odad3 (ENSDCDG00000026645)	ENSDCDG00000026649	rcor3 (ENSDCDG00000026656)	ENSDCDG00000026672	ENSDCDG00000026674 ##22	MARK1 (ENSDCDG00000026685)	ptk7a (ENSDCDG00000027076)	soul4 (ENSDCDG00000027155)	nup133 (ENSDCDG00000027169)	ACTA1 (ENSDCDG00000027243)	CCSAP (ENSDCDG00000027245)	RHOU (ENSDCDG00000027246)	dla (ENSDCDG00000027261)	ENSDCDG00000027266	smdt1b (ENSDCDG00000027269)	zgc:158803 (ENSDCDG00000027270)	pane1 (ENSDCDG00000027271)	mb (ENSDCDG00000027272)	ENSDCDG00000027274	ENSDCDG00000027300
Otophysi	ANCESTRAL SPECIES	261	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b
Characiphysae	ANCESTRAL SPECIES	117	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00390000007965	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b	ENSGT00530000064271	ENSGT00940000157388.b.b	ENSGT00940000155704
Channel catfish	MODERN SPECIES	1	si:ch211-284e20.8 (ENSIPUG00000002525)	FETUB (ENSIPUG00000002515)	hps3 (ENSIPUG00000002493)	cp (ENSIPUG00000002417)	TM4SF1 (ENSIPUG00000002406)	ENSIPUG00000002390	tm4sf4 (ENSIPUG00000002378)	wwtr1 (ENSIPUG00000002343)	commd2 (ENSIPUG00000002307)	ENSIPUG00000002295	ENSIPUG00000002286	ENSIPUG00000002259	kcnh1b (ENSIPUG00000002236)	rcor3 (ENSIPUG00000002202)	ENSIPUG00000002193	ENSIPUG00000002167 ##22	MARK1 (ENSIPUG00000001985)	ptk7 (ENSIPUG00000001905)	soul4 (ENSIPUG00000001884)	klc4 (ENSIPUG00000001836)	ENSIPUG00000001808	tle2a (ENSIPUG00000001748)	ENSIPUG00000001716	ENSIPUG00000001703	tle5 (ENSIPUG00000001688)	gna11a (ENSIPUG00000001673)	gna15.4 (ENSIPUG00000001668)	C2CD4C (ENSIPUG00000001665)	ap3d1 (ENSIPUG00000001409)	hdgfl2 (ENSIPUG00000001382)	UBXN6 (ENSIPUG00000001356)
Characiphysae_b	ANCESTRAL SPECIES	125	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b	ENSGT00530000064271	ENSGT00940000157388.b.b	ENSGT00940000155704
Characoidei	ANCESTRAL SPECIES	176	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00390000015458	ENSGT00940000155866	ENSGT01030000234590.A.b.a.a	ENSGT00940000165445	ENSGT01030000234590.A.b.b	ENSGT00510000046760.b	ENSGT00390000008489	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b
Red-bellied piranha	MODERN SPECIES	863													kcnh1b (ENSPNAG00000001601)	rcor3 (ENSPNAG00000001625)	ENSPNAG00000001638	ENSPNAG00000001648 ##22	MARK1 (ENSPNAG00000011355)	ptk7a (ENSPNAG00000011406)	soul4 (ENSPNAG00000011423)	ENSPNAG00000001750	ENSPNAG00000011484
Mexicana tetra	MODERN SPECIES	20	snrpa1 (ENSAMXG00000031397)	ENSAMXG00000029924	elp4 (ENSAMXG00000001232)	pax6b (ENSAMXG00000001228)	hps3 (ENSAMXG00000004755)	cp (ENSAMXG00000004739)	TM4SF1 (ENSAMXG00000036405)	ENSAMXG00000004727	tm4sf4 (ENSAMXG00000004720)	wwtr1 (ENSAMXG00000004716)	commd2 (ENSAMXG00000030801)	ENSAMXG00000004706	kcnh1b (ENSAMXG00000039836)	ENSAMXG00000004677 #33	ENSAMXG00000004662	ENSAMXG00000004646 ##22	MARK1 (ENSAMXG00000004609)	ENSAMXG00000036426
Electric eel	MODERN SPECIES	23	anos1b (ENSEEEG00000023869)	si:ch211-262h13.5 (ENSEEEG00000023872)	ahsg1 (ENSEEEG00000023876)	ENSEEEG00000023879	si:ch211-284e20.8 (ENSEEEG00000023884)	hps3 (ENSEEEG00000023891)	cp (ENSEEEG00000023903)	TM4SF1 (ENSEEEG00000023907)	tm4sf4 (ENSEEEG00000023911)	wwtr1 (ENSEEEG00000023916)	commd2 (ENSEEEG00000023917)	ENSEEEG00000023921	kcnh1b (ENSEEEG00000023922)	rcor3 (ENSEEEG00000023926)	ENSEEEG00000023930	ENSEEEG00000023945 ##22	ENSEEEG00000023986	ptk7a (ENSEEEG00000023998)	ENSEEEG00000024038	ENSEEEG00000024043	ENSEEEG00000024045	rrp36 (ENSEEEG00000024047)	sipa1l2 (ENSEEEG00000024051)	egln1b (ENSEEEG00000024055)	armh3 (ENSEEEG00000024064)	RANBP3 (ENSEEEG00000024107)	NRTN (ENSEEEG00000024108)	ndufa11 (ENSEEEG00000024109)	VMAC (ENSEEEG00000024110)	larp6b (ENSEEEG00000024111)	gadd45ba (ENSEEEG00000024113)
Cyprinoidei	ANCESTRAL SPECIES	123	ENSGT00950000182930.D	ENSGT00950000182930.C.f	ENSGT00950000182930.A.b.k.a	ENSGT00940000155793.a.a	ENSGT00550000074953	ENSGT00390000008489	ENSGT00510000046760.b	ENSGT01030000234590.A.b.b	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00940000156823.e	ENSGT00940000154196.b	ENSGT00940000163836.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a	ENSGT00940000157908.h	ENSGT00940000165109	ENSGT00940000164764.j.b	ENSGT00950000183209.b.a.a	ENSGT00390000009189	ENSGT00950000182836.a	ENSGT00940000159967	ENSGT00940000179241	ENSGT00940000154800	ENSGT00940000157952	ENSGT00530000064165.b	ENSGT00390000003866.a.a.e
Cyprininae	ANCESTRAL SPECIES	359	ENSGT00440000033720.b.d	ENSGT00950000182930.C.f.b	ENSGT00940000155793.a.a.a	ENSGT00550000074953	ENSGT00390000008489	ENSGT00390000007965	ENSGT00510000046760.b.c	ENSGT01030000234590.A.b.b.f	ENSGT01030000234590.A.b.a.a.a	ENSGT00940000155866.e.a	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00940000156823.e	ENSGT00940000154196.b	ENSGT00940000163836.a.b.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.g	ENSGT00940000157908.h.b	ENSGT00940000165109.b	ENSGT00940000164764.j.b.a	ENSGT00950000183209.b.a.a.h.b.a	ENSGT00940000162476.e.b	ENSGT00530000063604.A.b	ENSGT00940000162611.a.a.a.g	ENSGT00940000157322.b.b.a
Cyprininae_a	ANCESTRAL SPECIES	143	ENSGT00950000182930.C.f.b	ENSGT00940000155793.a.a.a	ENSGT00550000074953	ENSGT00390000008489	ENSGT00390000007965	ENSGT00510000046760.b.c	ENSGT01030000234590.A.b.b.f	ENSGT01030000234590.A.b.a.a.a	ENSGT00940000155866.e.a	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT01100000263547.a.a.a.d.a.a.a	ENSGT00940000156823.e	ENSGT00940000154196.b.c	ENSGT00940000163836.a.b.a	ENSGT00950000182772.A.b ##22	ENSGT00940000157560.d.a.g	ENSGT00940000157908.h.b	ENSGT00940000165109.b	ENSGT00940000164764.j.b.b	ENSGT00940000164764.i.a	ENSGT00950000183209.b.a.a.h.b.a	ENSGT00940000162476.e.b	ENSGT00530000063604.A.b	ENSGT00940000162611.a.a.a.g	ENSGT00940000157322.b.b.a	ENSGT00940000157331.b.a.i	ENSGT00940000157798.b.a	ENSGT00390000002554.l	ENSGT00940000157837.d.d	ENSGT00400000022158.b.h
Common carp reference	MODERN SPECIES	5	ENSCCRG00000058667	ENSCCRG00000068005	ahsg1 (ENSCCRG00000050855)	ENSCCRG00000058477	kcnh1b (ENSCCRG00000070669)	ENSCCRG00000056516	wwtr1 (ENSCCRG00000077468)	tm4sf4 (ENSCCRG00000025974)	ENSCCRG00000005007	cp (ENSCCRG00000005029)	si:ch211-284e20.8 (ENSCCRG00000005147)	ENSCCRG00000053357	elavl2 (ENSCCRG00000010600)	rcor3 (ENSCCRG00000010592)	ENSCCRG00000010589	ENSCCRG00000010585 ##22	ENSCCRG00000004540	ptk7a (ENSCCRG00000021855)	soul4 (ENSCCRG00000071566)	klc4 (ENSCCRG00000056204)	ENSCCRG00000057807	ENSCCRG00000062623	atpv0e2 (ENSCCRG00000037723)	hoga1 (ENSCCRG00000037731)	ENSCCRG00000064155	slit1b (ENSCCRG00000082250)	ENSCCRG00000029613	ENSCCRG00000029597	armh3 (ENSCCRG00000034896)	ENSCCRG00000036776	srfa (ENSCCRG00000078018)
Golden-line barbel	MODERN SPECIES	102	anos1b (ENSSGRG00000008442)	si:ch211-262h13.5 (ENSSGRG00000008443)	ENSSGRG00000008444	ahsg1 (ENSSGRG00000008445)	ENSSGRG00000008450	kcnh1b (ENSSGRG00000008452)	commd2 (ENSSGRG00000008688)	wwtr1 (ENSSGRG00000008690)	tm4sf4 (ENSSGRG00000008691)	cp (ENSSGRG00000008694)	ENSSGRG00000009073	elavl2 (ENSSGRG00000009074)	rcor3 (ENSSGRG00000009098)	ENSSGRG00000009386	ENSSGRG00000009391	ENSSGRG00000009395 ##22	MARK1 (ENSSGRG00000009418)	ptk7a (ENSSGRG00000009831)	soul4 (ENSSGRG00000010511)	ENSSGRG00000010514	klc4 (ENSSGRG00000010519)	ENSSGRG00000010542	ENSSGRG00000010793	ENSSGRG00000010795	atpv0e2 (ENSSGRG00000010796)	atpv0e2 (ENSSGRG00000010797)	hoga1 (ENSSGRG00000010798)	ENSSGRG00000010837	slit1b (ENSSGRG00000010840)	ARHGAP19 (ENSSGRG00000010851)	KCNIP2 (ENSSGRG00000010921)
Goldfish	MODERN SPECIES	14	ENSCARG00000004536	kcnh1b (ENSCARG00000004566)	ENSCARG00000004689	ENSCARG00000004696	commd2 (ENSCARG00000004709)	wwtr1 (ENSCARG00000004728)	tm4sf4 (ENSCARG00000004738)	ENSCARG00000004749	cp (ENSCARG00000004813)	ENSCARG00000005993	si:ch211-284e20.8 (ENSCARG00000005999)	elavl2 (ENSCARG00000006020)	rcor3 (ENSCARG00000006320)	ENSCARG00000006427	ENSCARG00000006443	ENSCARG00000006469 ##22	MARK1 (ENSCARG00000006623)	ptk7a (ENSCARG00000008293)	soul4 (ENSCARG00000010514)	klc4 (ENSCARG00000010522)	ENSCARG00000010586	ENSCARG00000011974	ENSCARG00000011983	atpv0e2 (ENSCARG00000011985)	hoga1 (ENSCARG00000011993)	ENSCARG00000012016	ARHGAP19 (ENSCARG00000012026)	KCNIP2 (ENSCARG00000012071)	armh3 (ENSCARG00000012164)	ENSCARG00000012269	srfa (ENSCARG00000012286)
Osteoglossiformes	ANCESTRAL SPECIES	263	ENSGT00390000006712	ENSGT00940000155423.i	ENSGT00940000159641	ENSGT00940000155483.c	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00940000155129.B.d	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.a.a	ENSGT00940000161321.f	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000160954	ENSGT00950000182772.A.b ##22	ENSGT00940000157837.d
Asian bonytongue	MODERN SPECIES	7	ATL2 (ENSSFOG00015021955)	eif4a3 (ENSSFOG00015022017)	SRF (ENSSFOG00015030894)	PTK7 (ENSSFOG00015022057)	MAP4K3 (ENSSFOG00015022098)	tmem178a (ENSSFOG00015022190)	slc8a1a (ENSSFOG00015022200)	ENSSFOG00015022212	pgap4 (ENSSFOG00015022221)	tpcn3 (ENSSFOG00015022231)	ENSSFOG00015022258	ENSSFOG00015030831	ENSSFOG00015022294	rcor3 (ENSSFOG00015022331)	TRAF5 (ENSSFOG00015022347)	ENSSFOG00015022361 ##22	EFEMP1 (ENSSFOG00015022380)	ENSSFOG00015022409	ENSSFOG00015022421	rbbp9 (ENSSFOG00015031725)	polr3f (ENSSFOG00015027007)	dzank1 (ENSSFOG00015022472)	kat14 (ENSSFOG00015022489)	AARS2 (ENSSFOG00015022513)	capn8 (ENSSFOG00015022547)	capn2b (ENSSFOG00015022584)	capn1b (ENSSFOG00015022628)	TMEM63B (ENSSFOG00015022661)	SLC29A1 (ENSSFOG00015022687)	ENSSFOG00015022702	taf5l (ENSSFOG00015022719)
P. kingsleyae	MODERN SPECIES	255	nceh1b.1 (ENSPKIG00000018606)	tnfsf10 (ENSPKIG00000018621)	msl2b (ENSPKIG00000018641)	ENSPKIG00000018653	ENSPKIG00000018663	DIP2C (ENSPKIG00000018837)	pgap4 (ENSPKIG00000019039)	tpcn3 (ENSPKIG00000019069)	ENSPKIG00000019127	ENSPKIG00000019169	ENSPKIG00000019191	ENSPKIG00000019217	kcnh1b (ENSPKIG00000019234)	rcor3 (ENSPKIG00000019270)	TRAF5 (ENSPKIG00000019302)	ENSPKIG00000019330 ##22	MARK1 (ENSPKIG00000019372)	EFEMP1 (ENSPKIG00000019463)	ENSPKIG00000019485
Spotted gar	MODERN SPECIES	654	mala.1 (ENSLOCG00000015615)	MAL (ENSLOCG00000015614)	nphp1 (ENSLOCG00000015611)	pgap4 (ENSLOCG00000017357)	tpcn3 (ENSLOCG00000015605)	ENSLOCG00000015601	slc22a7a (ENSLOCG00000015596)	slc22a7b.1 (ENSLOCG00000015592)	CRIP3 (ENSLOCG00000015589)	ENSLOCG00000015586	hhat (ENSLOCG00000015584)	kcnh1b (ENSLOCG00000015579)	ENSLOCG00000015577 #33	TRAF5 (ENSLOCG00000015572)	mrpl57 (ENSLOCG00000017356)	ENSLOCG00000015569 ##22	MARK1 (ENSLOCG00000015568)	CCDC88A (ENSLOCG00000015561)	prorsd1 (ENSLOCG00000015559)	mtif2 (ENSLOCG00000015555)	rps27a (ENSLOCG00000015551)	CLHC1 (ENSLOCG00000015546)	ENSLOCG00000017355	rtn4a (ENSLOCG00000015545)	EML6 (ENSLOCG00000015539)	SPTBN1 (ENSLOCG00000015528)	C2orf73 (ENSLOCG00000015525)	ENSLOCG00000015524	ENSLOCG00000017354	slc30a6 (ENSLOCG00000015520)	sult6b1 (ENSLOCG00000015518)
Reedfish	MODERN SPECIES	6	ENSECRG00000017522	ENSECRG00000017534	ENSECRG00000017550	ENSECRG00000014585	atl3 (ENSECRG00000014627)	ENSECRG00000014668	ENSECRG00000014683	slc22a7a (ENSECRG00000014814)	ENSECRG00000014987	ENSECRG00000015057	ENSECRG00000015128	hhat (ENSECRG00000015287)	KCNH1 (ENSECRG00000015774)	rcor3 (ENSECRG00000016101)	TRAF5 (ENSECRG00000016179)	ENSECRG00000016222 ##22	mrpl57 (ENSECRG00000016852)	MARK1 (ENSECRG00000016901)	SLC30A6 (ENSECRG00000017001)	ENSECRG00000017043	ACYP2 (ENSECRG00000017070)	ENSECRG00000017084	ENSECRG00000017103	SPTBN1 (ENSECRG00000017169)	EML6 (ENSECRG00000017325)	rtn4a (ENSECRG00000017365)	CLHC1 (ENSECRG00000017425)	rps27a (ENSECRG00000017569)	mtif2 (ENSECRG00000017602)	prorsd1 (ENSECRG00000017633)	ENSECRG00000017647
Elephant shark	MODERN SPECIES	1508	pkdcca (ENSCMIG00000005777)	BICRAL (ENSCMIG00000005782)	tbcc (ENSCMIG00000005788)	prph2b (ENSCMIG00000005792)	UBR2 (ENSCMIG00000005847)	TRERF1 (ENSCMIG00000005952)	MRPS10 (ENSCMIG00000005956)	utp25 (ENSCMIG00000005964)	ENSCMIG00000005966	SYT14 (ENSCMIG00000005968)	ENSCMIG00000005969	HHAT (ENSCMIG00000005972)	kcnh1b (ENSCMIG00000005986)	rcor3 (ENSCMIG00000006003)	TRAF5 (ENSCMIG00000006007)	ENSCMIG00000006010 ##22	mrpl57 (ENSCMIG00000006013)	ENSCMIG00000006016	pex13 (ENSCMIG00000006019)
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES	52											ENSGT00950000183171.B	ENSGT00940000174440	ENSGT00390000014308	ENSGT00940000156272	ENSGT00950000183019.c	ENSGT00950000182772.A.c #22	ENSGT00940000160982	ENSGT00940000157664
Ciona savignyi	DUPLICATION
Ciona savignyi	MODERN SPECIES	2	ENSCSAVG00000009992	ENSCSAVG00000009991	ENSCSAVG00000009975	ENSCSAVG00000009973	ENSCSAVG00000009959	ENSCSAVG00000009957	ENSCSAVG00000009953	ENSCSAVG00000009952	ENSCSAVG00000009951	ENSCSAVG00000009947	ENSCSAVG00000009944	ENSCSAVG00000009943	ENSCSAVG00000009940	ENSCSAVG00000009939	ENSCSAVG00000009937	ENSCSAVG00000009932 #22	ENSCSAVG00000009931	ENSCSAVG00000009928	ENSCSAVG00000009927	ENSCSAVG00000009925	ENSCSAVG00000009924	ENSCSAVG00000009922	ENSCSAVG00000009919	ENSCSAVG00000009918	ENSCSAVG00000009916	ENSCSAVG00000009913	ENSCSAVG00000009910	ENSCSAVG00000009907	ENSCSAVG00000009904	ENSCSAVG00000009900	ENSCSAVG00000009898
Ciona savignyi	MODERN SPECIES	129	ENSCSAVG00000003312	ENSCSAVG00000003395	ENSCSAVG00000003397	ENSCSAVG00000003400	ENSCSAVG00000003402	ENSCSAVG00000003409	ENSCSAVG00000003413	ENSCSAVG00000003415	ENSCSAVG00000003418	ENSCSAVG00000003420	ENSCSAVG00000003426	ENSCSAVG00000003437	ENSCSAVG00000003527	ENSCSAVG00000003532	ENSCSAVG00000004077	ENSCSAVG00000004090 #22	ENSCSAVG00000004213	ENSCSAVG00000004226	ENSCSAVG00000004234	ENSCSAVG00000004266	ENSCSAVG00000004388	ENSCSAVG00000004396	ENSCSAVG00000004414	ENSCSAVG00000004422	ENSCSAVG00000004428	ENSCSAVG00000004437	ENSCSAVG00000004449	ENSCSAVG00000004456	ENSCSAVG00000004463	ENSCSAVG00000004472	ENSCSAVG00000004476
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000023418	ENSCING00000000427	ENSCING00000016693	ENSCING00000011786	ENSCING00000007136	ENSCING00000020936	ENSCING00000021460	ENSCING00000019895	atbf (ENSCING00000011787)	ENSCING00000022595	ENSCING00000023130	ENSCING00000007138	ENSCING00000007139	ENSCING00000007140	ENSCING00000019273	ENSCING00000007141 #22	ENSCING00000007142	ENSCING00000011790	ENSCING00000021316	ENSCING00000023139	ENSCING00000018654	ENSCING00000019904	ENSCING00000019653	ENSCING00000022118	ENSCING00000011782	ENSCING00000007132	ENSCING00000011784	ENSCING00000011785	ENSCING00000019479	ENSCING00000007133	ENSCING00000007134
Ciona	ANCESTRAL SPECIES	671														ENSGT00530000067940	ENSGT00940000171978	ENSGT00950000182772.A.d #22
Ciona savignyi	MODERN SPECIES	154	ENSCSAVG00000008586	ENSCSAVG00000008585	ENSCSAVG00000008581	ENSCSAVG00000008580	ENSCSAVG00000008579	ENSCSAVG00000008577	ENSCSAVG00000008575	ENSCSAVG00000008561	ENSCSAVG00000008444	ENSCSAVG00000008421	ENSCSAVG00000008418	ENSCSAVG00000008365	ENSCSAVG00000008299	ENSCSAVG00000008294	ENSCSAVG00000008291	ENSCSAVG00000008285 #22	ENSCSAVG00000008194	ENSCSAVG00000008192	ENSCSAVG00000008188	ENSCSAVG00000008187	ENSCSAVG00000008185	ENSCSAVG00000008176	ENSCSAVG00000008174	ENSCSAVG00000008172	ENSCSAVG00000008171	ENSCSAVG00000008169	ENSCSAVG00000008166	ENSCSAVG00000008163	ENSCSAVG00000008149	ENSCSAVG00000008147	ENSCSAVG00000008119
Ciona intestinalis	MODERN SPECIES	15												ENSCING00000012054	ENSCING00000004264	ENSCING00000012055	ENSCING00000012056	ENSCING00000004256 #22	ENSCING00000020381	ENSCING00000021279	ENSCING00000004267	ENSCING00000004265	ENSCING00000018358	ENSCING00000012053	ENSCING00000019292	ENSCING00000020074	ENSCING00000024129	ENSCING00000017140	ENSCING00000024865	ci-ak58 (ENSCING00000004295)	ENSCING00000004284	ENSCING00000018624	ENSCING00000004299