Pecora	ANCESTRAL SPECIES	8	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #15	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00390000011514	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.p.a #26	ENSGT00390000004915.b #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.b #29	ENSGT00940000159602.c.b #30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d #33	ENSGT00510000046499.`c.a.c.a.a #34	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541	ENSGT00390000016421.b.a #37
Yarkand deer	MODERN SPECIES	10	ITGB2 (ENSCHYG00000013305) #7	SLX9 (ENSCHYG00000013417) #8	ADARB1 (ENSCHYG00000013492) #9	POFUT2 (ENSCHYG00000013580) #10	ENSCHYG00000013809 #11	SLC19A1 (ENSCHYG00000014939) #12	PCBP3 (ENSCHYG00000015231) #13	ENSCHYG00000015578 #14	COL6A1 (ENSCHYG00000015735) #15	COL6A2 (ENSCHYG00000016288) #16	FTCD (ENSCHYG00000017995) #17	SPATC1L (ENSCHYG00000018089) #18	LSS (ENSCHYG00000018157) #19	MCM3AP (ENSCHYG00000018660) #20	YBEY (ENSCHYG00000019060) #21	PCNT (ENSCHYG00000019684) #22	DIP2A (ENSCHYG00000021088) #23	S100B (ENSCHYG00000022569) #24	PRMT2 (ENSCHYG00000022622) #25	ENSCHYG00000022791 #26	FBXO25 (ENSCHYG00000022825) #27	TDRP (ENSCHYG00000022964) #28	ENSCHYG00000023002 #29	ENSCHYG00000023032 #30	RUNX1 (ENSCHYG00000023067) #31	SETD4 (ENSCHYG00000023190) #32	ENSCHYG00000023267 #33	ENSCHYG00000023358 #34	ENSCHYG00000023378 #35	ENSCHYG00000023406 #36	DOP1B (ENSCHYG00000023458) #37
Percora_a	ANCESTRAL SPECIES	7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #15	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00390000011514	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.b #29	ENSGT00940000159602.c.a ##30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d #33	ENSGT00510000046499.`c.a.c.a.a #34	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541	ENSGT00390000016421.b.a #37
Siberian musk deer	MODERN SPECIES	1185	SLX9 (ENSMMSG00000012926) #8	ENSMMSG00000012948	ADARB1 (ENSMMSG00000012958) #9	POFUT2 (ENSMMSG00000012988) #10	COL18A1 (ENSMMSG00000013041)	SLC19A1 (ENSMMSG00000013111) #12	PCBP3 (ENSMMSG00000013149) #13	ENSMMSG00000013267	ENSMMSG00000013286	COL6A2 (ENSMMSG00000013324) #16	FTCD (ENSMMSG00000012880) #17	SPATC1L (ENSMMSG00000012984) #18	LSS (ENSMMSG00000013009) #19	MCM3AP (ENSMMSG00000013071) #20	YBEY (ENSMMSG00000013126) #21	PCNT (ENSMMSG00000013234) #22	DIP2A (ENSMMSG00000013513) #23	S100B (ENSMMSG00000013818) #24	PRMT2 (ENSMMSG00000013848) #25	ENSMMSG00000013903	FBXO25 (ENSMMSG00000013966) #27	TDRP (ENSMMSG00000014000) #28	ENSMMSG00000014024 #29	RUNX1 (ENSMMSG00000014047) #31	SETD4 (ENSMMSG00000014122) #32	ENSMMSG00000014178 ##34	ENSMMSG00000014188 ##34	CBR3 (ENSMMSG00000014250)	DOP1B (ENSMMSG00000014259) #37	MORC3 (ENSMMSG00000014310)	CHAF1B (ENSMMSG00000014326)
Bovidae	ANCESTRAL SPECIES	9	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #15	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00390000011514	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.a #26	ENSGT00940000159602.c.a ##30	ENSGT00940000159602.d ##30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d #33	ENSGT00510000046499.`c.a.c.a.a #34	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541
Bovinae	ANCESTRAL SPECIES	6	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #15	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00390000011514	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.a.a #26	ENSGT00940000159602.c.a ##30	ENSGT00940000159602.d ##30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d #33	ENSGT00510000046499.`c.a.c.a.a #34	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541
American bison	MODERN SPECIES	2975	ITGB2 (ENSBBBG00000003799) #7	SLX9 (ENSBBBG00000003802) #8	ADARB1 (ENSBBBG00000001357) #9	ENSBBBG00000001345 #10	ENSBBBG00000001334 #10	ENSBBBG00000001319	SLC19A1 (ENSBBBG00000001312) #12	PCBP3 (ENSBBBG00000015403) #13	COL6A1 (ENSBBBG00000015494) #15	COL6A2 (ENSBBBG00000015610) #16	FTCD (ENSBBBG00000015621) #17	SPATC1L (ENSBBBG00000015631) #18	LSS (ENSBBBG00000002644) #19	MCM3AP (ENSBBBG00000015748) #20	YBEY (ENSBBBG00000015798) #21	ENSBBBG00000003968 #22	DIP2A (ENSBBBG00000016225) #23	S100B (ENSBBBG00000016247) #24	PRMT2 (ENSBBBG00000016343) #25	ENSBBBG00000016361	FBXO25 (ENSBBBG00000016404) #27	TDRP (ENSBBBG00000016413) #28	ENSBBBG00000016420 #26	ENSBBBG00000016432 ##30	RUNX1 (ENSBBBG00000016523) #31	SETD4 (ENSBBBG00000016605) #32	ENSBBBG00000007614 #33	ENSBBBG00000016692 ##34	ENSBBBG00000006958	DOP1B (ENSBBBG00000016914) #37	MORC3 (ENSBBBG00000016952)
Bos	ANCESTRAL SPECIES	7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #15	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00390000011514	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.f #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.a.a #26	ENSGT00940000159602.c.a ##30	ENSGT00940000159602.d ##30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d #33	ENSGT00510000046499.`c.a.c.a.a #34	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541
Bos_a	ANCESTRAL SPECIES	5	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #15	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00390000011514	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.e #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.a.a #26	ENSGT00940000159602.d ##30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d #33	ENSGT00390000016421.b.a #37	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541	ENSGT00940000160495
Wild yak	MODERN SPECIES	1401									COL6A1 (ENSBMUG00000019539) #15	COL6A2 (ENSBMUG00000019350) #16	FTCD (ENSBMUG00000019201) #17	SPATC1L (ENSBMUG00000019099) #18	LSS (ENSBMUG00000019069) #19	MCM3AP (ENSBMUG00000018534) #20	YBEY (ENSBMUG00000018009) #21	PCNT (ENSBMUG00000017747) #22	DIP2A (ENSBMUG00000017386) #23	S100B (ENSBMUG00000017272) #24	PRMT2 (ENSBMUG00000017225) #25	FBXO25 (ENSBMUG00000017147) #27	TDRP (ENSBMUG00000017069) #28	ENSBMUG00000017055 #26
Bos_b	ANCESTRAL SPECIES	5	ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000155682 #16	ENSGT00390000005581.a #17	ENSGT00520000055666.b #18	ENSGT00390000011570 #19	ENSGT00940000156322 #20	ENSGT00950000183170.b.b #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.f #27	ENSGT00390000017888 #28	ENSGT00960000186612.A.p.a.b #26	ENSGT00960000186612.A.p.a.a #26	ENSGT00940000159602.c.a ##30	ENSGT00940000159255 #31	ENSGT00940000153577.A #32	ENSGT00510000046499.`c.a.d.c #33	ENSGT00510000046499.`c.a.c.a.a #34	ENSGT00510000046499.`c.a.c.a.b ##34	ENSGT00940000162541
Cow	MODERN SPECIES		SLX9 (ENSBTAG00000017010) #8	ADARB1 (ENSBTAG00000017486) #9	POFUT2 (ENSBTAG00000007818) #10	COL18A1 (ENSBTAG00000023907)	SLC19A1 (ENSBTAG00000024162) #12	PCBP3 (ENSBTAG00000030775) #13	ENSBTAG00000048318	COL6A1 (ENSBTAG00000011802)	COL6A2 (ENSBTAG00000019269) #16	FTCD (ENSBTAG00000020404) #17	SPATC1L (ENSBTAG00000020409) #18	LSS (ENSBTAG00000018936) #19	MCM3AP (ENSBTAG00000003148) #20	YBEY (ENSBTAG00000003161) #21	C1H21orf58 (ENSBTAG00000021984)	PCNT (ENSBTAG00000030670) #22	DIP2A (ENSBTAG00000011495) #23	S100B (ENSBTAG00000004777) #24	PRMT2 (ENSBTAG00000005503) #25	ENSBTAG00000052513	FBXO25 (ENSBTAG00000007039) #27	TDRP (ENSBTAG00000043957) #28	ENSBTAG00000052599 #26	ENSBTAG00000053000 #26	ENSBTAG00000046447 ##30	RUNX1 (ENSBTAG00000004742) #31	SETD4 (ENSBTAG00000018682) #32	CBR1 (ENSBTAG00000023384) #33	ENSBTAG00000052342 #33	MGC127133 (ENSBTAG00000030629) ##34	CBR3 (ENSBTAG00000018688)
Hybrid Bos Indicus	MODERN SPECIES		PTTG1IP (ENSBIXG00005019381)	ITGB2 (ENSBIXG00005019335) #7	SLX9 (ENSBIXG00005019260) #8	ADARB1 (ENSBIXG00005019197) #9	POFUT2 (ENSBIXG00005019083) #10	COL18A1 (ENSBIXG00005018920)	SLC19A1 (ENSBIXG00005018773) #12	PCBP3 (ENSBIXG00005018711) #13	ENSBIXG00005018619	COL6A2 (ENSBIXG00005006450) #16	FTCD (ENSBIXG00005018494) #17	SPATC1L (ENSBIXG00005018481) #18	LSS (ENSBIXG00005018442) #19	MCM3AP (ENSBIXG00005018185) #20	YBEY (ENSBIXG00005018157) #21	ENSBIXG00005018060 #22	DIP2A (ENSBIXG00005002893) #23	S100B (ENSBIXG00005017738) #24	PRMT2 (ENSBIXG00005017685) #25	ENSBIXG00005002856	FBXO25 (ENSBIXG00005017564) #27	ENSBIXG00005017443 #28	ENSBIXG00005017410	ENSBIXG00005017402 ##30	ENSBIXG00005017394 ##30	RUNX1 (ENSBIXG00005005427) #31	SETD4 (ENSBIXG00005017211) #32	ENSBIXG00005017175 #33	ENSBIXG00005017141 #34	ENSBIXG00005017110 ##34	ENSBIXG00005017086 #37