Rodentia_A	ANCESTRAL SPECIES	5	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Long-tailed chinchilla	MODERN SPECIES	114	ITGB2 (ENSCLAG00000011530) #7	SLX9 (ENSCLAG00000015540) #8	ADARB1 (ENSCLAG00000010595) #9	POFUT2 (ENSCLAG00000014869) #10	COL18A1 (ENSCLAG00000009590) #11	SLC19A1 (ENSCLAG00000005746) #12	PCBP3 (ENSCLAG00000006667) #13	COL6A1 (ENSCLAG00000004686) #14	COL6A2 (ENSCLAG00000009215) #15	FTCD (ENSCLAG00000014029) #16	SPATC1L (ENSCLAG00000016436) #17	LSS (ENSCLAG00000011987) #18	MCM3AP (ENSCLAG00000013358) #19	YBEY (ENSCLAG00000006892) #20	ENSCLAG00000007820 #21	PCNT (ENSCLAG00000012697) #22	DIP2A (ENSCLAG00000013614) #23	S100B (ENSCLAG00000009038) #24	PRMT2 (ENSCLAG00000006778) #25
Guinea pig	MODERN SPECIES	110				POFUT2 (ENSCPOG00000009385) #10	COL18A1 (ENSCPOG00000020725) #11	SLC19A1 (ENSCPOG00000023229) #12	PCBP3 (ENSCPOG00000003648) #13	ENSCPOG00000030777	COL6A2 (ENSCPOG00000021819) #15	FTCD (ENSCPOG00000026874) #16	SPATC1L (ENSCPOG00000008358) #17	LSS (ENSCPOG00000013859) #18	MCM3AP (ENSCPOG00000002407) #19	YBEY (ENSCPOG00000002415) #20	ENSCPOG00000010788 #21	PCNT (ENSCPOG00000015488) #22	DIP2A (ENSCPOG00000003803) #23	S100B (ENSCPOG00000037925) #24	PRMT2 (ENSCPOG00000019877) #25	ENSCPOG00000024671
Naked mole-rat female	MODERN SPECIES	30	LIN9 (ENSHGLG00000007823)	Parp1 (ENSHGLG00000003992)	ENSHGLG00000035038	PLAG1 (ENSHGLG00000001672)	MOS (ENSHGLG00000049453)	ENSHGLG00000033196	LYN (ENSHGLG00000002926)	ENSHGLG00000000284	ENSHGLG00000000295	ENSHGLG00000000769	TBPL2 (ENSHGLG00000001017)	ENSHGLG00000001414	ENSHGLG00000049393	ENSHGLG00000016069 #20	ENSHGLG00000017345 #21	PCNT (ENSHGLG00000015807) #22	DIP2A (ENSHGLG00000014043) #23	ENSHGLG00000013120 #24	ENSHGLG00000015854 #25	ENSHGLG00000032905	ENSHGLG00000047983	ENSHGLG00000051009	ENSHGLG00000042568	ENSHGLG00000012384	ENSHGLG00000050008	RPP38 (ENSHGLG00000012144)	ENSHGLG00000011997	ENSHGLG00000038242	ENSHGLG00000039803	FAM171A1 (ENSHGLG00000011141)	ENSHGLG00000010183
Sciuridae	ANCESTRAL SPECIES	12	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989.h #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Marmotini	ANCESTRAL SPECIES	13	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989.h #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25
Marmotini_b	ANCESTRAL SPECIES	182	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989.h #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25
Arctic ground squirrel	MODERN SPECIES	704										COL6A2 (ENSUPAG00010007568) #15	FTCD (ENSUPAG00010007605) #16	SPATC1L (ENSUPAG00010007627) #17	LSS (ENSUPAG00010007641) #18	MCM3AP (ENSUPAG00010007682) #19	YBEY (ENSUPAG00010007732) #20	PCNT (ENSUPAG00010007767) #22	DIP2A (ENSUPAG00010007831) #23	PRMT2 (ENSUPAG00010008124) #25	ENSUPAG00010008141
Squirrel	MODERN SPECIES	378	ITGB2 (ENSSTOG00000001412) #7	SLX9 (ENSSTOG00000028031) #8	ADARB1 (ENSSTOG00000015792) #9	POFUT2 (ENSSTOG00000028617) #10	ENSSTOG00000027467 #11	SLC19A1 (ENSSTOG00000007113) #12	PCBP3 (ENSSTOG00000007178) #13	ENSSTOG00000022346	COL6A2 (ENSSTOG00000024366) #15	FTCD (ENSSTOG00000020132) #16	SPATC1L (ENSSTOG00000026388) #17	LSS (ENSSTOG00000007503) #18	MCM3AP (ENSSTOG00000007531) #19	YBEY (ENSSTOG00000029373) #20	ENSSTOG00000031143 #21	PCNT (ENSSTOG00000007621) #22	DIP2A (ENSSTOG00000007172) #23	PRMT2 (ENSSTOG00000016495) #25
Alpin marmot	MODERN SPECIES	4	ITGB2 (ENSMMMG00000012709) #7	SLX9 (ENSMMMG00000012725) #8	ADARB1 (ENSMMMG00000012767) #9	POFUT2 (ENSMMMG00000012809) #10	ENSMMMG00000012904 #11	SLC19A1 (ENSMMMG00000012919) #12	PCBP3 (ENSMMMG00000012976) #13	ENSMMMG00000013027	COL6A2 (ENSMMMG00000013048) #15	ENSMMMG00000013067 #15	FTCD (ENSMMMG00000013068) #16	SPATC1L (ENSMMMG00000013131) #17	LSS (ENSMMMG00000013141) #18	MCM3AP (ENSMMMG00000013170) #19	ENSMMMG00000013208 #21	PCNT (ENSMMMG00000013242) #22	DIP2A (ENSMMMG00000013393) #23	ENSMMMG00000013510	PRMT2 (ENSMMMG00000013520) #25