Chordata	ANCESTRAL SPECIES																	ENSGT00730000110871 #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.b #22
Gnathostomata	ANCESTRAL SPECIES	498													ENSGT00390000011514 #21	ENSGT00950000183170.b.b #20	ENSGT00940000156322 #19	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000011570 #18	ENSGT00520000055666.b #17	ENSGT00390000005581.a #16
Euteleostomi	ANCESTRAL SPECIES	529										ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22
Sarcopterygii	ANCESTRAL SPECIES	472										ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22
Tetrapoda	ANCESTRAL SPECIES	6		ENSGT00940000167200	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01030000235951	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000159677.c.a	ENSGT00940000159677.c.b.a
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000167200	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000163601	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01030000235951	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000159677.c.a	ENSGT00940000159677.c.b.a
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25	ENSGT00940000161997.a #24	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267	ENSGT00940000159677.d	ENSGT00940000160270	ENSGT00390000009001	ENSGT00940000160639
Theria	ANCESTRAL SPECIES	58	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Eutheria	ANCESTRAL SPECIES	5	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Glires	ANCESTRAL SPECIES	2	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hystricomorpha	ANCESTRAL SPECIES	60	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Long-tailed chinchilla	MODERN SPECIES	114	ITGB2 (ENSCLAG00000011530) #7	SLX9 (ENSCLAG00000015540) #8	ADARB1 (ENSCLAG00000010595) #9	POFUT2 (ENSCLAG00000014869) #10	COL18A1 (ENSCLAG00000009590) #11	SLC19A1 (ENSCLAG00000005746) #12	PCBP3 (ENSCLAG00000006667) #13	COL6A1 (ENSCLAG00000004686) #14	COL6A2 (ENSCLAG00000009215) #15	FTCD (ENSCLAG00000014029) #16	SPATC1L (ENSCLAG00000016436) #17	LSS (ENSCLAG00000011987) #18	MCM3AP (ENSCLAG00000013358) #19	YBEY (ENSCLAG00000006892) #20	ENSCLAG00000007820 #21	PCNT (ENSCLAG00000012697) #22	DIP2A (ENSCLAG00000013614) #23	S100B (ENSCLAG00000009038) #24	PRMT2 (ENSCLAG00000006778) #25
Guinea pig	MODERN SPECIES	110				POFUT2 (ENSCPOG00000009385) #10	COL18A1 (ENSCPOG00000020725) #11	SLC19A1 (ENSCPOG00000023229) #12	PCBP3 (ENSCPOG00000003648) #13	ENSCPOG00000030777	COL6A2 (ENSCPOG00000021819) #15	FTCD (ENSCPOG00000026874) #16	SPATC1L (ENSCPOG00000008358) #17	LSS (ENSCPOG00000013859) #18	MCM3AP (ENSCPOG00000002407) #19	YBEY (ENSCPOG00000002415) #20	ENSCPOG00000010788 #21	PCNT (ENSCPOG00000015488) #22	DIP2A (ENSCPOG00000003803) #23	S100B (ENSCPOG00000037925) #24	PRMT2 (ENSCPOG00000019877) #25	ENSCPOG00000024671
Naked mole-rat female	MODERN SPECIES	30	LIN9 (ENSHGLG00000007823)	Parp1 (ENSHGLG00000003992)	ENSHGLG00000035038	PLAG1 (ENSHGLG00000001672)	MOS (ENSHGLG00000049453)	ENSHGLG00000033196	LYN (ENSHGLG00000002926)	ENSHGLG00000000284	ENSHGLG00000000295	ENSHGLG00000000769	TBPL2 (ENSHGLG00000001017)	ENSHGLG00000001414	ENSHGLG00000049393	ENSHGLG00000016069 #20	ENSHGLG00000017345 #21	PCNT (ENSHGLG00000015807) #22	DIP2A (ENSHGLG00000014043) #23	ENSHGLG00000013120 #24	ENSHGLG00000015854 #25	ENSHGLG00000032905	ENSHGLG00000047983	ENSHGLG00000051009	ENSHGLG00000042568	ENSHGLG00000012384	ENSHGLG00000050008	RPP38 (ENSHGLG00000012144)	ENSHGLG00000011997	ENSHGLG00000038242	ENSHGLG00000039803	FAM171A1 (ENSHGLG00000011141)	ENSHGLG00000010183
Sciuridae	ANCESTRAL SPECIES	12	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989.h #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Marmotini	ANCESTRAL SPECIES	13	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989.h #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25
Marmotini_b	ANCESTRAL SPECIES	182	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989.h #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25
Arctic ground squirrel	MODERN SPECIES	704										COL6A2 (ENSUPAG00010007568) #15	FTCD (ENSUPAG00010007605) #16	SPATC1L (ENSUPAG00010007627) #17	LSS (ENSUPAG00010007641) #18	MCM3AP (ENSUPAG00010007682) #19	YBEY (ENSUPAG00010007732) #20	PCNT (ENSUPAG00010007767) #22	DIP2A (ENSUPAG00010007831) #23	PRMT2 (ENSUPAG00010008124) #25	ENSUPAG00010008141
Squirrel	MODERN SPECIES	378	ITGB2 (ENSSTOG00000001412) #7	SLX9 (ENSSTOG00000028031) #8	ADARB1 (ENSSTOG00000015792) #9	POFUT2 (ENSSTOG00000028617) #10	ENSSTOG00000027467 #11	SLC19A1 (ENSSTOG00000007113) #12	PCBP3 (ENSSTOG00000007178) #13	ENSSTOG00000022346	COL6A2 (ENSSTOG00000024366) #15	FTCD (ENSSTOG00000020132) #16	SPATC1L (ENSSTOG00000026388) #17	LSS (ENSSTOG00000007503) #18	MCM3AP (ENSSTOG00000007531) #19	YBEY (ENSSTOG00000029373) #20	ENSSTOG00000031143 #21	PCNT (ENSSTOG00000007621) #22	DIP2A (ENSSTOG00000007172) #23	PRMT2 (ENSSTOG00000016495) #25
Alpin marmot	MODERN SPECIES	4	ITGB2 (ENSMMMG00000012709) #7	SLX9 (ENSMMMG00000012725) #8	ADARB1 (ENSMMMG00000012767) #9	POFUT2 (ENSMMMG00000012809) #10	ENSMMMG00000012904 #11	SLC19A1 (ENSMMMG00000012919) #12	PCBP3 (ENSMMMG00000012976) #13	ENSMMMG00000013027	COL6A2 (ENSMMMG00000013048) #15	ENSMMMG00000013067 #15	FTCD (ENSMMMG00000013068) #16	SPATC1L (ENSMMMG00000013131) #17	LSS (ENSMMMG00000013141) #18	MCM3AP (ENSMMMG00000013170) #19	ENSMMMG00000013208 #21	PCNT (ENSMMMG00000013242) #22	DIP2A (ENSMMMG00000013393) #23	ENSMMMG00000013510	PRMT2 (ENSMMMG00000013520) #25
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Muroidea	ANCESTRAL SPECIES	11	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608	ENSGT00940000162786
Cricetidae	ANCESTRAL SPECIES	9	ENSGT01090000259987.a.a.a.c #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608	ENSGT00940000162786
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT01090000259987.a.a.a.c #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608	ENSGT00940000162786
Northern American deer mouse	MODERN SPECIES	13	Itgb2 (ENSPEMG00000023793) #7	Fam207a (ENSPEMG00000029013) #8	Adarb1 (ENSPEMG00000022360) #9	Pofut2 (ENSPEMG00000021691) #10	Col18a1 (ENSPEMG00000019720) #11	Slc19a1 (ENSPEMG00000019847) #12	Pcbp3 (ENSPEMG00000000587) #13	Col6a1 (ENSPEMG00000011883) #14	Col6a2 (ENSPEMG00000023614) #15	Ftcd (ENSPEMG00000011905) #16	Spatc1l (ENSPEMG00000015524) #17	Lss (ENSPEMG00000024002) #18	Mcm3ap (ENSPEMG00000014754) #19	Ybey (ENSPEMG00000000492) #20	2610028H24Rik (ENSPEMG00000009493) #21	Pcnt (ENSPEMG00000012406) #22	Dip2a (ENSPEMG00000011906) #23	S100b (ENSPEMG00000024584) #24	Prmt2 (ENSPEMG00000016675) #25	Slc5a4a (ENSPEMG00000016494)	Slc5a4b (ENSPEMG00000018545)	Zfp280b (ENSPEMG00000023991)	Gm5134 (ENSPEMG00000017870)	Vpreb3 (ENSPEMG00000010214)	Gm867 (ENSPEMG00000025778)	Chchd10 (ENSPEMG00000000593)	Mmp11 (ENSPEMG00000011798)	Smarcb1 (ENSPEMG00000009146)	Derl3 (ENSPEMG00000001396)	Mif (ENSPEMG00000029509)	Gstt2 (ENSPEMG00000011446)
Prairie vole	MODERN SPECIES	352	Itgb2 (ENSMOCG00000022498) #7	Fam207a (ENSMOCG00000021449) #8	Adarb1 (ENSMOCG00000018324) #9	Pofut2 (ENSMOCG00000013158) #10	Col18a1 (ENSMOCG00000019606) #11	Slc19a1 (ENSMOCG00000008838) #12	Pcbp3 (ENSMOCG00000016127) #13	Col6a1 (ENSMOCG00000015635) #14	Col6a2 (ENSMOCG00000007120) #15	Ftcd (ENSMOCG00000013801) #16	Spatc1l (ENSMOCG00000012025) #17	Lss (ENSMOCG00000020263) #18	Mcm3ap (ENSMOCG00000018380) #19	Ybey (ENSMOCG00000012634) #20	2610028H24Rik (ENSMOCG00000022971) #21	Pcnt (ENSMOCG00000006875) #22	Dip2a (ENSMOCG00000015916) #23	S100b (ENSMOCG00000020304) #24	Prmt2 (ENSMOCG00000017602) #25	Slc5a4a (ENSMOCG00000003852)	Slc5a4b (ENSMOCG00000019990)	Zfp280b (ENSMOCG00000012097)	Gm5134 (ENSMOCG00000021314)	Vpreb3 (ENSMOCG00000008215)	Chchd10 (ENSMOCG00000010864)	Mmp11 (ENSMOCG00000020671)	Smarcb1 (ENSMOCG00000019899)	Derl3 (ENSMOCG00000017853)	Mif (ENSMOCG00000016316)	Gstt2 (ENSMOCG00000015654)	Gstt4 (ENSMOCG00000011085)
Cricetinae	ANCESTRAL SPECIES	24	ENSGT01090000259987.a.a.a.c #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608	ENSGT00940000162786	ENSGT00940000161301	ENSGT00940000156366.a.b
Chinese hamster chok1gshd	MODERN SPECIES	204	Itgb2 (ENSCGRG00001016235) #7	Fam207a (ENSCGRG00001016236) #8	Adarb1 (ENSCGRG00001023922) #9	Pofut2 (ENSCGRG00001022765) #10	Col18a1 (ENSCGRG00001013369) #11	SLC19A1 (ENSCGRG00001016846) #12	Pcbp3 (ENSCGRG00001006836) #13	Col6a1 (ENSCGRG00001017421) #14	Col6a2 (ENSCGRG00001003342) #15	Ftcd (ENSCGRG00001011730) #16	Spatc1l (ENSCGRG00001017850) #17	Lss (ENSCGRG00001020282) #18	Mcm3ap (ENSCGRG00001015274) #19	Ybey (ENSCGRG00001022036) #20	2610028H24Rik (ENSCGRG00001023849) #21	Pcnt (ENSCGRG00001017614) #22	Dip2a (ENSCGRG00001004170) #23	ENSCGRG00001009479	Prmt2 (ENSCGRG00001010555) #25	ENSCGRG00001002616	ENSCGRG00001024447	Zfp280b (ENSCGRG00001011844)	ENSCGRG00001000305	Vpreb3 (ENSCGRG00001007138)	Chchd10 (ENSCGRG00001023480)	Mmp11 (ENSCGRG00001001274)	Smarcb1 (ENSCGRG00001013732)	Derl3 (ENSCGRG00001023562)	Mif (ENSCGRG00001002079)	Gstt2 (ENSCGRG00001012995)	Gstt4 (ENSCGRG00001012558)
Golden Hamster	MODERN SPECIES	641	Adarb1 (ENSMAUG00000009334) #9	Pofut2 (ENSMAUG00000006922) #10	Col18a1 (ENSMAUG00000008076) #11	Slc19a1 (ENSMAUG00000007979) #12	ENSMAUG00000012520	Pcbp3 (ENSMAUG00000007036) #13	ENSMAUG00000020615	Col6a2 (ENSMAUG00000022073) #15	Ftcd (ENSMAUG00000004152) #16	Spatc1l (ENSMAUG00000006869) #17	Lss (ENSMAUG00000005365) #18	Mcm3ap (ENSMAUG00000008393) #19	ENSMAUG00000002217	Ybey (ENSMAUG00000005858) #20	2610028H24Rik (ENSMAUG00000009720) #21	Pcnt (ENSMAUG00000022248) #22	Dip2a (ENSMAUG00000018650) #23	S100b (ENSMAUG00000015774) #24	Prmt2 (ENSMAUG00000017688) #25	Slc5a4a (ENSMAUG00000019866)	Zfp280b (ENSMAUG00000015647)	ENSMAUG00000011759	Vpreb3 (ENSMAUG00000010815)	Chchd10 (ENSMAUG00000012109)	Mmp11 (ENSMAUG00000012311)	Smarcb1 (ENSMAUG00000021023)	Derl3 (ENSMAUG00000016207)	ENSMAUG00000002603	Gstt4 (ENSMAUG00000010826)	Gstt1 (ENSMAUG00000020425)	Gstt3 (ENSMAUG00000015468)
Murinae	ANCESTRAL SPECIES	18	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608.q.a.a	ENSGT00940000162786
Mus	ANCESTRAL SPECIES	15	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608.q.a.a	ENSGT00940000162786
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00900000143399	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608.q.a.a.a	ENSGT00940000162786
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00900000143399	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00390000015147	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608.q.a.a.a.a	ENSGT00940000162786
Mus_C	ANCESTRAL SPECIES	7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00900000143399	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000160846.c	ENSGT00940000160846.d	ENSGT00940000161054	ENSGT00940000163531	ENSGT00940000161808	ENSGT00940000161345	ENSGT00940000156340.a	ENSGT00440000038585	ENSGT00530000063156.a.a.b	ENSGT00940000155608.q.a.a.a.a	ENSGT00940000162786	ENSGT00940000161301
spretus	MODERN SPECIES	1	Adarb1 (MGP_SPRETEiJ_G0016294) #9	Pofut2 (MGP_SPRETEiJ_G0016293) #10	MGP_SPRETEiJ_G0016292	Col18a1 (MGP_SPRETEiJ_G0016291) #11	Slc19a1 (MGP_SPRETEiJ_G0016290) #12	MGP_SPRETEiJ_G0016289	Pcbp3 (MGP_SPRETEiJ_G0016288) #13	Col6a1 (MGP_SPRETEiJ_G0016287) #14	Col6a2 (MGP_SPRETEiJ_G0016286) #15	Ftcd (MGP_SPRETEiJ_G0016285) #16	Spatc1l (MGP_SPRETEiJ_G0016284) #17	Lss (MGP_SPRETEiJ_G0016283) #18	Mcm3ap (MGP_SPRETEiJ_G0016282) #19	Ybey (MGP_SPRETEiJ_G0016281) #20	2610028H24Rik (MGP_SPRETEiJ_G0016280) #21	Pcnt (MGP_SPRETEiJ_G0016279) #22	MGP_SPRETEiJ_G0016278 #23	S100b (MGP_SPRETEiJ_G0016277) #24	Prmt2 (MGP_SPRETEiJ_G0016276) #25	Slc5a4a (MGP_SPRETEiJ_G0016275)	Slc5a4b (MGP_SPRETEiJ_G0016274)	Zfp280b (MGP_SPRETEiJ_G0016273)	Gm5134 (MGP_SPRETEiJ_G0016272)	Vpreb3 (MGP_SPRETEiJ_G0016271)	Chchd10 (MGP_SPRETEiJ_G0016270)	Mmp11 (MGP_SPRETEiJ_G0016269)	Smarcb1 (MGP_SPRETEiJ_G0016268)	Derl3 (MGP_SPRETEiJ_G0016267)	Mif (MGP_SPRETEiJ_G0016266)	Gstt2 (MGP_SPRETEiJ_G0016265)	Gstt4 (MGP_SPRETEiJ_G0016264)
Steppe mouse	MODERN SPECIES	2997											ENSMSIG00000003212 #17	Lss (ENSMSIG00000003250) #18	Mcm3ap (ENSMSIG00000003384) #19	ENSMSIG00000003478 #20	2610028H24Rik (ENSMSIG00000003499) #21	Pcnt (ENSMSIG00000003573) #22	Dip2a (ENSMSIG00000004099) #23	S100b (ENSMSIG00000004765) #24	Prmt2 (ENSMSIG00000004778) #25	Slc5a4a (ENSMSIG00000004850)	Slc5a4b (ENSMSIG00000004902)	ENSMSIG00000004952	Gm5134 (ENSMSIG00000004960)	Vpreb3 (ENSMSIG00000005055)	Mmp11 (ENSMSIG00000005065)	Smarcb1 (ENSMSIG00000005155)	Derl3 (ENSMSIG00000005221)	ENSMSIG00000005270	Gstt2 (ENSMSIG00000005282)	Gstt4 (ENSMSIG00000005311)	Gstt1 (ENSMSIG00000005326)
Mouse	MODERN SPECIES	1	Fam207a (ENSMUSG00000032977) #8	Adarb1 (ENSMUSG00000020262) #9	Pofut2 (ENSMUSG00000020260) #10	Col18a1 (ENSMUSG00000001435) #11	Slc19a1 (ENSMUSG00000001436) #12	Pcbp3 (ENSMUSG00000001120) #13	Col6a1 (ENSMUSG00000001119) #14	Col6a2 (ENSMUSG00000020241) #15	Ftcd (ENSMUSG00000001155) #16	Spatc1l (ENSMUSG00000009115) #17	Lss (ENSMUSG00000033105) #18	Mcm3ap (ENSMUSG00000001150) #19	Ybey (ENSMUSG00000033126) #20	2610028H24Rik (ENSMUSG00000009114) #21	Gm56118 (ENSMUSG00000117965)	Pcnt (ENSMUSG00000001151) #22	Dip2a (ENSMUSG00000020231) #23	S100b (ENSMUSG00000033208) #24	Prmt2 (ENSMUSG00000020230) #25	Slc5a4a (ENSMUSG00000020229)	Slc5a4b (ENSMUSG00000020226)	Zfp280b (ENSMUSG00000049764)	Gm5134 (ENSMUSG00000033255)	Vpreb3 (ENSMUSG00000000903)	Gm867 (ENSMUSG00000050157)	Chchd10 (ENSMUSG00000049422)	Mmp11 (ENSMUSG00000000901)	Smarcb1 (ENSMUSG00000000902)	Derl3 (ENSMUSG00000009092)	Mif (ENSMUSG00000033307)	Gstt2 (ENSMUSG00000033318)
Ryukyu mouse	MODERN SPECIES	1	Adarb1 (MGP_CAROLIEiJ_G0015481) #9	Pofut2 (MGP_CAROLIEiJ_G0015480) #10	MGP_CAROLIEiJ_G0015479	Col18a1 (MGP_CAROLIEiJ_G0015478) #11	Slc19a1 (MGP_CAROLIEiJ_G0015477) #12	MGP_CAROLIEiJ_G0015476	Pcbp3 (MGP_CAROLIEiJ_G0015475) #13	Col6a1 (MGP_CAROLIEiJ_G0015474) #14	Col6a2 (MGP_CAROLIEiJ_G0015473) #15	Ftcd (MGP_CAROLIEiJ_G0015472) #16	Spatc1l (MGP_CAROLIEiJ_G0015471) #17	Lss (MGP_CAROLIEiJ_G0015470) #18	Mcm3ap (MGP_CAROLIEiJ_G0015469) #19	Ybey (MGP_CAROLIEiJ_G0015468) #20	2610028H24Rik (MGP_CAROLIEiJ_G0015467) #21	Pcnt (MGP_CAROLIEiJ_G0015466) #22	Dip2a (MGP_CAROLIEiJ_G0015465) #23	S100b (MGP_CAROLIEiJ_G0015464) #24	Prmt2 (MGP_CAROLIEiJ_G0015463) #25	Slc5a4a (MGP_CAROLIEiJ_G0015462)	Slc5a4b (MGP_CAROLIEiJ_G0015461)	Zfp280b (MGP_CAROLIEiJ_G0015460)	Gm5134 (MGP_CAROLIEiJ_G0015459)	Vpreb3 (MGP_CAROLIEiJ_G0015458)	Chchd10 (MGP_CAROLIEiJ_G0015457)	Mmp11 (MGP_CAROLIEiJ_G0015456)	Smarcb1 (MGP_CAROLIEiJ_G0015455)	Derl3 (MGP_CAROLIEiJ_G0015454)	Mif (MGP_CAROLIEiJ_G0015453)	Gstt2 (MGP_CAROLIEiJ_G0015452)	Gstt4 (MGP_CAROLIEiJ_G0015451)
Shrew mouse	MODERN SPECIES	22	Fam207a (MGP_PahariEiJ_G0030895) #8	Adarb1 (MGP_PahariEiJ_G0030894) #9	Pofut2 (MGP_PahariEiJ_G0030893) #10	Col18a1 (MGP_PahariEiJ_G0030892) #11	Slc19a1 (MGP_PahariEiJ_G0030891) #12	MGP_PahariEiJ_G0030890	Pcbp3 (MGP_PahariEiJ_G0030889) #13	Col6a1 (MGP_PahariEiJ_G0030888) #14	Col6a2 (MGP_PahariEiJ_G0030887) #15	Ftcd (MGP_PahariEiJ_G0030886) #16	Spatc1l (MGP_PahariEiJ_G0030885) #17	Lss (MGP_PahariEiJ_G0030884) #18	Mcm3ap (MGP_PahariEiJ_G0030883) #19	Ybey (MGP_PahariEiJ_G0030882) #20	2610028H24Rik (MGP_PahariEiJ_G0030881) #21	Pcnt (MGP_PahariEiJ_G0030880) #22	Dip2a (MGP_PahariEiJ_G0030879) #23	S100b (MGP_PahariEiJ_G0030878) #24	Prmt2 (MGP_PahariEiJ_G0030877) #25	Slc5a4a (MGP_PahariEiJ_G0030876)	Gm5134 (MGP_PahariEiJ_G0030875)	MGP_PahariEiJ_G0030874	Chchd10 (MGP_PahariEiJ_G0030873)	Mmp11 (MGP_PahariEiJ_G0030872)	Smarcb1 (MGP_PahariEiJ_G0030871)	Derl3 (MGP_PahariEiJ_G0030870)	Mif (MGP_PahariEiJ_G0030869)	Gstt2 (MGP_PahariEiJ_G0030868)	Gstt4 (MGP_PahariEiJ_G0030867)	Gstt1 (MGP_PahariEiJ_G0030866)	Gstt3 (MGP_PahariEiJ_G0030865)
Rat	MODERN SPECIES	12	Slx9 (ENSRNOG00000001225) #8	Nme2-ps1 (ENSRNOG00000001226)	Adarb1 (ENSRNOG00000001227) #9	Pofut2 (ENSRNOG00000001228) #10	Col18a1 (ENSRNOG00000001229) #11	Slc19a1 (ENSRNOG00000001232) #12	Pcbp3 (ENSRNOG00000001245) #13	Col6a1 (ENSRNOG00000001249) #14	Col6a2 (ENSRNOG00000001254) #15	Ftcd (ENSRNOG00000001261) #16	Spatc1l (ENSRNOG00000070409) #17	Lss (ENSRNOG00000054549) #18	Mcm3ap (ENSRNOG00000001272) #19	Ybey (ENSRNOG00000021365) #20	RGD1564149 (ENSRNOG00000012714) #21	Pcnt (ENSRNOG00000001276) #22	Dip2a (ENSRNOG00000043212) #23	S100b (ENSRNOG00000001295) #24	Prmt2 (ENSRNOG00000001297) #25	Slc5a4 (ENSRNOG00000049734)	Slc5a4b (ENSRNOG00000001298)	Zfp280b (ENSRNOG00000028441)	RGD1563815 (ENSRNOG00000029979)	Vpreb3 (ENSRNOG00000065441)	RGD1564162 (ENSRNOG00000028386)	Chchd10 (ENSRNOG00000028356)	Mmp11 (ENSRNOG00000028344)	Smarcb1 (ENSRNOG00000028302)	Derl3 (ENSRNOG00000028243)	Mif (ENSRNOG00000006589)	Gstt2 (ENSRNOG00000052415)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1105	Itgb2 (ENSNGAG00000015702) #7	Fam207a (ENSNGAG00000020787) #8	Adarb1 (ENSNGAG00000021602) #9	Pofut2 (ENSNGAG00000016043) #10	Col18a1 (ENSNGAG00000019514) #11	ENSNGAG00000003477 #12	Pcbp3 (ENSNGAG00000005416) #13	Col6a1 (ENSNGAG00000010525) #14	Col6a2 (ENSNGAG00000013702) #15	Ftcd (ENSNGAG00000015978) #16	Spatc1l (ENSNGAG00000016890) #17	Lss (ENSNGAG00000018100) #18	Mcm3ap (ENSNGAG00000020806) #19	Ybey (ENSNGAG00000000949) #20	ENSNGAG00000001257 #21	Pcnt (ENSNGAG00000006451) #22	Dip2a (ENSNGAG00000014719) #23	S100b (ENSNGAG00000017093) #24	ENSNGAG00000017453 #25
Lesser Egyptian jerboa	MODERN SPECIES	142	Oaf (ENSJJAG00000015119)	Pou2f3 (ENSJJAG00000014254)	Tlcd5 (ENSJJAG00000013409)	Arhgef12 (ENSJJAG00000008231)	Grik4 (ENSJJAG00000022344)	Tbcel (ENSJJAG00000020854)	Tecta (ENSJJAG00000018896)	Sc5d (ENSJJAG00000017694)	Sorl1 (ENSJJAG00000017298)	Ubash3b (ENSJJAG00000016033)	Crtam (ENSJJAG00000014838)	Jhy (ENSJJAG00000013871)	Bsx (ENSJJAG00000013198)	Hspa8 (ENSJJAG00000012917)	Clmp (ENSJJAG00000012798)	Pcnt (ENSJJAG00000011857) #22	Dip2a (ENSJJAG00000009803) #23	S100b (ENSJJAG00000012400) #24	Prmt2 (ENSJJAG00000010743) #25	Ltbp1 (ENSJJAG00000023271)	Ttc27 (ENSJJAG00000016727)	Birc6 (ENSJJAG00000000153)	Yipf4 (ENSJJAG00000018863)	Slc30a6 (ENSJJAG00000016943)	Spast (ENSJJAG00000013723)	Dpy30 (ENSJJAG00000018546)	Memo1 (ENSJJAG00000017746)	Srd5a2 (ENSJJAG00000017180)
Kangaroo rat	MODERN SPECIES	478	ENSDORG00000012531 #7	Fam207a (ENSDORG00000028131) #8	Adarb1 (ENSDORG00000000619) #9	Pofut2 (ENSDORG00000009350) #10	ENSDORG00000011477	Slc19a1 (ENSDORG00000008087) #12	Pcbp3 (ENSDORG00000003640) #13	ENSDORG00000004103	Col6a2 (ENSDORG00000028732) #15	Ftcd (ENSDORG00000004547) #16	Spatc1l (ENSDORG00000010414) #17	Lss (ENSDORG00000010415) #18	Mcm3ap (ENSDORG00000004416) #19	Ybey (ENSDORG00000024242) #20	ENSDORG00000007242 #21	Pcnt (ENSDORG00000007244) #22	ENSDORG00000027954	Dip2a (ENSDORG00000012447) #23	S100b (ENSDORG00000013831) #24
Lagomorpha	ANCESTRAL SPECIES	266												ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Rabbit	MODERN SPECIES	5										ENSOCUG00000000409 #15	ENSOCUG00000026058	LSS (ENSOCUG00000001938) #18	MCM3AP (ENSOCUG00000004784) #19	YBEY (ENSOCUG00000027700) #20	ENSOCUG00000004797 #21	PCNT (ENSOCUG00000004806) #22	DIP2A (ENSOCUG00000004831) #23	S100B (ENSOCUG00000001473) #24	PRMT2 (ENSOCUG00000016126) #25	ENSOCUG00000028055	ENSOCUG00000017611	GTPBP6 (ENSOCUG00000008245)	PLCXD1 (ENSOCUG00000025223)	OLIG1 (ENSOCUG00000027389)	C21orf62 (ENSOCUG00000007160)	SYNJ1 (ENSOCUG00000001420)	CFAP298 (ENSOCUG00000000461)	ENSOCUG00000012278	URB1 (ENSOCUG00000009381)	MRAP (ENSOCUG00000021276)	MIS18A (ENSOCUG00000009379)
Pika	MODERN SPECIES	2604																PCNT (ENSOPRG00000000034) #22
Tree shrew	MODERN SPECIES	2919																ENSTBEG00000001599 #22	DIP2A (ENSTBEG00000006335) #23	PRMT2 (ENSTBEG00000008289) #25
Primates	ANCESTRAL SPECIES	1	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Haplorrhini	ANCESTRAL SPECIES	22	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Catarrhini	ANCESTRAL SPECIES	25	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Hominoidea	ANCESTRAL SPECIES	26	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Hominidae	ANCESTRAL SPECIES	25	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	27	ENSGT00390000015709.e.a #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Homo/Pan group	ANCESTRAL SPECIES	26	ENSGT00390000015709.e.a #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Pan	ANCESTRAL SPECIES	27	ENSGT00390000018577	ENSGT00390000015709.e.a.a #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00530000064552	ENSGT00940000160683 #25
Bonobo	MODERN SPECIES	12	ENSPPAG00000034706	ENSPPAG00000034875 #8	ADARB1 (ENSPPAG00000027139) #9	POFUT2 (ENSPPAG00000035189) #10	ENSPPAG00000014049 #11	SLC19A1 (ENSPPAG00000027716) #12	PCBP3 (ENSPPAG00000021940) #13	COL6A1 (ENSPPAG00000027819) #14	COL6A2 (ENSPPAG00000029776) #15	FTCD (ENSPPAG00000032812) #16	SPATC1L (ENSPPAG00000034632) #17	LSS (ENSPPAG00000035048) #18	MCM3AP (ENSPPAG00000025048) #19	YBEY (ENSPPAG00000030933) #20	C21orf58 (ENSPPAG00000031586) #21	PCNT (ENSPPAG00000034343) #22	DIP2A (ENSPPAG00000038882) #23	ENSPPAG00000030816	PRMT2 (ENSPPAG00000035050) #25
Chimpanzee	MODERN SPECIES	12	ENSPTRG00000013994	SLX9 (ENSPTRG00000013995) #8	ADARB1 (ENSPTRG00000013997) #9	POFUT2 (ENSPTRG00000014001) #10	COL18A1 (ENSPTRG00000014005) #11	SLC19A1 (ENSPTRG00000031409) #12	PCBP3 (ENSPTRG00000014010) #13	COL6A2 (ENSPTRG00000014014) #15	ENSPTRG00000049395 #15	ENSPTRG00000047921	SPATC1L (ENSPTRG00000014016) #17	LSS (ENSPTRG00000014017) #18	MCM3AP (ENSPTRG00000014019) #19	YBEY (ENSPTRG00000014021) #20	C21H21orf58 (ENSPTRG00000014022) #21	PCNT (ENSPTRG00000014023) #22	DIP2A (ENSPTRG00000014025) #23	S100B (ENSPTRG00000014026)	PRMT2 (ENSPTRG00000014027) #25
Human	MODERN SPECIES	13	ITGB2 (ENSG00000160255) #7	SLX9 (ENSG00000160256) #8	ADARB1 (ENSG00000197381) #9	POFUT2 (ENSG00000186866) #10	COL18A1 (ENSG00000182871) #11	SLC19A1 (ENSG00000173638) #12	PCBP3 (ENSG00000183570) #13	COL6A1 (ENSG00000142156) #14	COL6A2 (ENSG00000142173) #15	FTCD (ENSG00000160282) #16	SPATC1L (ENSG00000160284) #17	LSS (ENSG00000160285) #18	MCM3AP (ENSG00000160294) #19	YBEY (ENSG00000182362) #20	C21orf58 (ENSG00000160298) #21	PCNT (ENSG00000160299) #22	ENSG00000286224	DIP2A (ENSG00000160305) #23	S100B (ENSG00000160307) #24	PRMT2 (ENSG00000160310) #25
Gorilla	MODERN SPECIES	12	ENSGGOG00000014477	ENSGGOG00000014482 #8	ADARB1 (ENSGGOG00000013244) #9	POFUT2 (ENSGGOG00000015065) #10	ENSGGOG00000011704 #11	SLC19A1 (ENSGGOG00000011734) #12	PCBP3 (ENSGGOG00000003683) #13	COL6A1 (ENSGGOG00000001462) #14	COL6A2 (ENSGGOG00000003661) #15	FTCD (ENSGGOG00000002869) #16	SPATC1L (ENSGGOG00000012943) #17	LSS (ENSGGOG00000015701) #18	MCM3AP (ENSGGOG00000015716) #19	YBEY (ENSGGOG00000015733) #20	C21orf58 (ENSGGOG00000041767) #21	PCNT (ENSGGOG00000011788) #22	DIP2A (ENSGGOG00000011841) #23	ENSGGOG00000027399	PRMT2 (ENSGGOG00000010719) #25
Orangutan	MODERN SPECIES	12	ENSPPYG00000031942	SLX9 (ENSPPYG00000011509) #8	ADARB1 (ENSPPYG00000011514) #9	POFUT2 (ENSPPYG00000011516) #10	ENSPPYG00000011521 #11	SLC19A1 (ENSPPYG00000011523) #12	PCBP3 (ENSPPYG00000011525) #13	COL6A1 (ENSPPYG00000034634) #14	COL6A2 (ENSPPYG00000011527) #15	FTCD (ENSPPYG00000011528) #16	SPATC1L (ENSPPYG00000011529) #17	LSS (ENSPPYG00000011530) #18	MCM3AP (ENSPPYG00000011532) #19	ENSPPYG00000011535 #20	C21orf58 (ENSPPYG00000011536) #21	PCNT (ENSPPYG00000011537) #22	DIP2A (ENSPPYG00000011538) #23	S100B (ENSPPYG00000011539) #24	PRMT2 (ENSPPYG00000011540) #25
Gibbon	MODERN SPECIES	17	ITGB2 (ENSNLEG00000002418) #7	ENSNLEG00000002454	SLX9 (ENSNLEG00000002488) #8	ADARB1 (ENSNLEG00000002514) #9	ENSNLEG00000002577 #10	ENSNLEG00000002591 #11	PCBP3 (ENSNLEG00000002639) #13	ENSNLEG00000002651	COL6A2 (ENSNLEG00000002670) #15	ENSNLEG00000002699 #16	SPATC1L (ENSNLEG00000002707) #17	LSS (ENSNLEG00000002728) #18	MCM3AP (ENSNLEG00000002880) #19	ENSNLEG00000031884	C21orf58 (ENSNLEG00000003101) #21	PCNT (ENSNLEG00000003144) #22	DIP2A (ENSNLEG00000003222) #23	ENSNLEG00000003320	PRMT2 (ENSNLEG00000003330) #25
Cercopithecidae	ANCESTRAL SPECIES	28	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Cercopithecinae	ANCESTRAL SPECIES	23	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	22	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	29	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Cercopithecinae_d	ANCESTRAL SPECIES	36	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00530000064552	ENSGT00940000160683 #25
Drill	MODERN SPECIES	1221							PCBP3 (ENSMLEG00000038785) #13	COL6A1 (ENSMLEG00000029822) #14	COL6A2 (ENSMLEG00000017555) #15	FTCD (ENSMLEG00000008656) #16	SPATC1L (ENSMLEG00000028783) #17	LSS (ENSMLEG00000033329) #18	MCM3AP (ENSMLEG00000041901) #19	YBEY (ENSMLEG00000034149) #20	ENSMLEG00000033463	PCNT (ENSMLEG00000036135) #22	DIP2A (ENSMLEG00000040859) #23	ENSMLEG00000030850	PRMT2 (ENSMLEG00000041912) #25	ENSMLEG00000043464	ENSMLEG00000032551
Sooty mangabey	MODERN SPECIES	465	ITGB2 (ENSCATG00000039608) #7	SLX9 (ENSCATG00000019293) #8	ADARB1 (ENSCATG00000029876) #9	POFUT2 (ENSCATG00000034952) #10	COL18A1 (ENSCATG00000038222) #11	SLC19A1 (ENSCATG00000036905) #12	PCBP3 (ENSCATG00000038419) #13	COL6A1 (ENSCATG00000040431) #14	COL6A2 (ENSCATG00000041547) #15	FTCD (ENSCATG00000041690) #16	SPATC1L (ENSCATG00000037303) #17	LSS (ENSCATG00000038397) #18	MCM3AP (ENSCATG00000039155) #19	YBEY (ENSCATG00000035660) #20	C21orf58 (ENSCATG00000007258) #21	PCNT (ENSCATG00000040523) #22	DIP2A (ENSCATG00000025334) #23	ENSCATG00000037851	PRMT2 (ENSCATG00000031360) #25
Olive baboon	MODERN SPECIES	14	SLX9 (ENSPANG00000021083) #8	ADARB1 (ENSPANG00000020871) #9	POFUT2 (ENSPANG00000023630) #10	SLC19A1 (ENSPANG00000017097) #12	PCBP3 (ENSPANG00000023631) #13	ENSPANG00000022692	ENSPANG00000048117	COL6A2 (ENSPANG00000024175) #15	FTCD (ENSPANG00000008270) #16	SPATC1L (ENSPANG00000017098) #17	LSS (ENSPANG00000019152) #18	MCM3AP (ENSPANG00000024225) #19	YBEY (ENSPANG00000024224) #20	C21orf58 (ENSPANG00000024223) #21	ENSPANG00000049667	PCNT (ENSPANG00000008159) #22	DIP2A (ENSPANG00000022431) #23	S100B (ENSPANG00000042633) #24	PRMT2 (ENSPANG00000019949) #25	ENSPANG00000045615	ENSPANG00000047026
Macaca	ANCESTRAL SPECIES	3	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Macaca_a	ANCESTRAL SPECIES	22	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Rhesus	MODERN SPECIES	13	ADARB1 (ENSMMUG00000010695) #9	POFUT2 (ENSMMUG00000010700) #10	COL18A1 (ENSMMUG00000004472) #11	SLC19A1 (ENSMMUG00000004477) #12	PCBP3 (ENSMMUG00000003825) #13	COL6A1 (ENSMMUG00000000544) #14	ENSMMUG00000055486	COL6A2 (ENSMMUG00000022317) #15	FTCD (ENSMMUG00000022324) #16	SPATC1L (ENSMMUG00000058335) #17	ENSMMUG00000064313	LSS (ENSMMUG00000022329) #18	MCM3AP (ENSMMUG00000022331) #19	YBEY (ENSMMUG00000012911) #20	C3H21orf58 (ENSMMUG00000039473) #21	PCNT (ENSMMUG00000012914) #22	DIP2A (ENSMMUG00000015797) #23	S100B (ENSMMUG00000063077) #24	PRMT2 (ENSMMUG00000015803) #25	ENSMMUG00000053532
Pig-tailed macaque	MODERN SPECIES	503	ITGB2 (ENSMNEG00000031016) #7	SLX9 (ENSMNEG00000044629) #8	ADARB1 (ENSMNEG00000031543) #9	POFUT2 (ENSMNEG00000041753) #10	COL18A1 (ENSMNEG00000032048) #11	SLC19A1 (ENSMNEG00000029970) #12	PCBP3 (ENSMNEG00000035551) #13	COL6A1 (ENSMNEG00000043587) #14	COL6A2 (ENSMNEG00000035628) #15	FTCD (ENSMNEG00000045053) #16	SPATC1L (ENSMNEG00000028822) #17	LSS (ENSMNEG00000044250) #18	MCM3AP (ENSMNEG00000029780) #19	YBEY (ENSMNEG00000039114) #20	C21orf58 (ENSMNEG00000029851) #21	PCNT (ENSMNEG00000036330) #22	DIP2A (ENSMNEG00000040653) #23	ENSMNEG00000034764	PRMT2 (ENSMNEG00000038764) #25
Vervet Monkey	MODERN SPECIES	11	ADARB1 (ENSCSAG00000007489) #9	POFUT2 (ENSCSAG00000007479) #10	ENSCSAG00000007471	SLC19A1 (ENSCSAG00000007456) #12	ENSCSAG00000007440	ENSCSAG00000007430	ENSCSAG00000007424	ENSCSAG00000007389	COL6A2 (ENSCSAG00000007240) #15	FTCD (ENSCSAG00000007233) #16	SPATC1L (ENSCSAG00000007226) #17	LSS (ENSCSAG00000007209) #18	MCM3AP (ENSCSAG00000007194) #19	YBEY (ENSCSAG00000007183) #20	C21orf58 (ENSCSAG00000007179) #21	PCNT (ENSCSAG00000007152) #22	DIP2A (ENSCSAG00000007091) #23	S100B (ENSCSAG00000007071) #24	PRMT2 (ENSCSAG00000007062) #25
Rhinopithecus	ANCESTRAL SPECIES	210	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162768.B	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00530000064552	ENSGT00940000160683 #25
Golden snub-nosed monkey	MODERN SPECIES	1482		SLX9 (ENSRROG00000045309) #8	ADARB1 (ENSRROG00000042856) #9	POFUT2 (ENSRROG00000036833) #10	COL18A1 (ENSRROG00000041309) #11	SLC19A1 (ENSRROG00000032854) #12	PCBP3 (ENSRROG00000034567) #13	COL6A1 (ENSRROG00000034310) #14	COL6A2 (ENSRROG00000038780) #15	FTCD (ENSRROG00000045071) #16	SPATC1L (ENSRROG00000030883) #17	LSS (ENSRROG00000040461) #18	MCM3AP (ENSRROG00000006150) #19	YBEY (ENSRROG00000039507) #20	C21orf58 (ENSRROG00000043985) #21	PCNT (ENSRROG00000034301) #22	DIP2A (ENSRROG00000034962) #23	ENSRROG00000029645	PRMT2 (ENSRROG00000041142) #25
Black snub-nosed monkey	MODERN SPECIES	1318										FTCD (ENSRBIG00000039978) #16	SPATC1L (ENSRBIG00000027898) #17	LSS (ENSRBIG00000031749) #18	MCM3AP (ENSRBIG00000031129) #19	YBEY (ENSRBIG00000032496) #20	C21orf58 (ENSRBIG00000044610) #21	PCNT (ENSRBIG00000035911) #22	DIP2A (ENSRBIG00000040181) #23	ENSRBIG00000029838	PRMT2 (ENSRBIG00000040835) #25
Platyrrhini	ANCESTRAL SPECIES	31	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Cebidae	ANCESTRAL SPECIES	32	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00530000064552	ENSGT00940000160683 #25
Cebidae_a	ANCESTRAL SPECIES	29	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00530000064552	ENSGT00940000160683 #25
Bolivian squirrel monkey	MODERN SPECIES	155	ALLC (ENSSBOG00000025429)	DCDC2C (ENSSBOG00000023428)	ENSSBOG00000021838	POFUT2 (ENSSBOG00000026751) #10	COL18A1 (ENSSBOG00000026331) #11	SLC19A1 (ENSSBOG00000024098) #12	PCBP3 (ENSSBOG00000005789) #13	COL6A1 (ENSSBOG00000033262) #14	COL6A2 (ENSSBOG00000024612) #15	FTCD (ENSSBOG00000032120) #16	SPATC1L (ENSSBOG00000028722) #17	LSS (ENSSBOG00000030101) #18	MCM3AP (ENSSBOG00000024259) #19	YBEY (ENSSBOG00000030954) #20	ENSSBOG00000029549 #21	PCNT (ENSSBOG00000031686) #22	ENSSBOG00000034552	DIP2A (ENSSBOG00000027645) #23	ENSSBOG00000027563	PRMT2 (ENSSBOG00000030953) #25
Capuchin	MODERN SPECIES	112	ITGB2 (ENSCCAG00000001137) #7	SLX9 (ENSCCAG00000036236) #8	ADARB1 (ENSCCAG00000029934) #9	POFUT2 (ENSCCAG00000020926) #10	COL18A1 (ENSCCAG00000036606) #11	SLC19A1 (ENSCCAG00000026323) #12	PCBP3 (ENSCCAG00000024561) #13	COL6A1 (ENSCCAG00000028601) #14	COL6A2 (ENSCCAG00000027356) #15	FTCD (ENSCCAG00000009041) #16	SPATC1L (ENSCCAG00000030470) #17	LSS (ENSCCAG00000022848) #18	MCM3AP (ENSCCAG00000032869) #19	YBEY (ENSCCAG00000035845) #20	C21orf58 (ENSCCAG00000032298) #21	PCNT (ENSCCAG00000036461) #22	DIP2A (ENSCCAG00000026675) #23	ENSCCAG00000016321	PRMT2 (ENSCCAG00000028685) #25	ENSCCAG00000027671
Marmoset	MODERN SPECIES	13	ENSCJAG00000071675	ADARB1 (ENSCJAG00000018646) #9	ENSCJAG00000081850 #10	COL18A1 (ENSCJAG00000083421) #11	ENSCJAG00000081985	SLC19A1 (ENSCJAG00000001943) #12	PCBP3 (ENSCJAG00000077507) #13	COL6A1 (ENSCJAG00000078346) #14	COL6A2 (ENSCJAG00000001863) #15	FTCD (ENSCJAG00000080609) #16	SPATC1L (ENSCJAG00000085076) #17	LSS (ENSCJAG00000086602) #18	MCM3AP (ENSCJAG00000001770) #19	YBEY (ENSCJAG00000080541) #20	ENSCJAG00000001809	PCNT (ENSCJAG00000075934) #22	DIP2A (ENSCJAG00000001624) #23	ENSCJAG00000001606	PRMT2 (ENSCJAG00000001571) #25	ENSCJAG00000074974
Mas night monkey	MODERN SPECIES	1200														YBEY (ENSANAG00000021957) #20	C21orf58 (ENSANAG00000027423) #21	PCNT (ENSANAG00000023500) #22	DIP2A (ENSANAG00000021722) #23	S100B (ENSANAG00000019592) #24	PRMT2 (ENSANAG00000030484) #25
Tarsier	MODERN SPECIES	5584																PCNT (ENSTSYG00000006592) #22	DIP2A (ENSTSYG00000011177) #23	ENSTSYG00000030283	S100B (ENSTSYG00000029403) #24	PRMT2 (ENSTSYG00000003437) #25
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Lemuriformes	ANCESTRAL SPECIES	88	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Mouse lemur	MODERN SPECIES	24	ITGB2 (ENSMICG00000002984) #7	SLX9 (ENSMICG00000047718) #8	ADARB1 (ENSMICG00000008433) #9	POFUT2 (ENSMICG00000035479) #10	COL18A1 (ENSMICG00000037125) #11	SLC19A1 (ENSMICG00000035898) #12	PCBP3 (ENSMICG00000012679) #13	ENSMICG00000033569	COL6A2 (ENSMICG00000033173) #15	FTCD (ENSMICG00000002458) #16	SPATC1L (ENSMICG00000027207) #17	LSS (ENSMICG00000004051) #18	MCM3AP (ENSMICG00000000801) #19	YBEY (ENSMICG00000000809) #20	ENSMICG00000047063 #21	PCNT (ENSMICG00000000816) #22	DIP2A (ENSMICG00000047083) #23	S100B (ENSMICG00000038064) #24	PRMT2 (ENSMICG00000015531) #25	ENSMICG00000033410	ENSMICG00000046801	ENSMICG00000046990	ENSMICG00000047484	ENSMICG00000046324
Lemuriformes_a	ANCESTRAL SPECIES	181	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b.s #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00940000173680	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Coquerels sifaka	MODERN SPECIES	543	PTTG1IP (ENSPCOG00000020581)	ITGB2 (ENSPCOG00000014923) #7	SLX9 (ENSPCOG00000020078) #8	ADARB1 (ENSPCOG00000020406) #9	POFUT2 (ENSPCOG00000016074) #10	COL18A1 (ENSPCOG00000014698) #11	SLC19A1 (ENSPCOG00000027927) #12	PCBP3 (ENSPCOG00000013797) #13	COL6A1 (ENSPCOG00000014806) #14	COL6A2 (ENSPCOG00000016356) #15	FTCD (ENSPCOG00000021020) #16	SPATC1L (ENSPCOG00000025023) #17	LSS (ENSPCOG00000019936) #18	MCM3AP (ENSPCOG00000024498) #19	YBEY (ENSPCOG00000015606) #20	PCNT (ENSPCOG00000014872) #22	DIP2A (ENSPCOG00000016283) #23	S100B (ENSPCOG00000018301) #24	PRMT2 (ENSPCOG00000028679) #25
Greater bamboo lemur	MODERN SPECIES	646													MCM3AP (ENSPSMG00000005342) #19	YBEY (ENSPSMG00000005292) #20	ENSPSMG00000005278	PCNT (ENSPSMG00000005262) #22	DIP2A (ENSPSMG00000005174) #23	S100B (ENSPSMG00000005022) #24	ENSPSMG00000005019	PRMT2 (ENSPSMG00000004935) #25
Bushbaby	MODERN SPECIES	243	ENSOGAG00000026126	ADARB1 (ENSOGAG00000017167) #9	POFUT2 (ENSOGAG00000017168) #10	ENSOGAG00000024946	COL18A1 (ENSOGAG00000000892) #11	SLC19A1 (ENSOGAG00000032361) #12	ENSOGAG00000008044	ENSOGAG00000024419	COL6A1 (ENSOGAG00000031247) #14	COL6A2 (ENSOGAG00000005077) #15	FTCD (ENSOGAG00000008226) #16	SPATC1L (ENSOGAG00000008230) #17	LSS (ENSOGAG00000009183) #18	MCM3AP (ENSOGAG00000009196) #19	YBEY (ENSOGAG00000029299) #20	PCNT (ENSOGAG00000001796) #22	DIP2A (ENSOGAG00000013139) #23	PRMT2 (ENSOGAG00000013155) #25
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.b #22
Common shrew	MODERN SPECIES	4113																ENSSARG00000010326 #22
Hedgehog	MODERN SPECIES	5295																ENSEEUG00000000978 #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Cetacea	ANCESTRAL SPECIES	10	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.p
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000162768.B	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.p
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.p
Dolphin	MODERN SPECIES	1333												LSS (ENSTTRG00000000356) #18	MCM3AP (ENSTTRG00000000357) #19	ENSTTRG00000000360 #20	ENSTTRG00000000361 #21	ENSTTRG00000000362 #22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.p
Vaquita	MODERN SPECIES	15	ENSPSNG00000013509	SLX9 (ENSPSNG00000013591) #8	ADARB1 (ENSPSNG00000013670) #9	POFUT2 (ENSPSNG00000013804) #10	COL18A1 (ENSPSNG00000013985) #11	SLC19A1 (ENSPSNG00000014338) #12	ENSPSNG00000014382	COL6A1 (ENSPSNG00000014616) #14	COL6A2 (ENSPSNG00000014738) #15	FTCD (ENSPSNG00000014870) #16	SPATC1L (ENSPSNG00000015232) #17	LSS (ENSPSNG00000015377) #18	MCM3AP (ENSPSNG00000015503) #19	ENSPSNG00000015602 #20	ENSPSNG00000015771	ENSPSNG00000015809 #22	ENSPSNG00000015929 #23	ENSPSNG00000016067 #23	S100B (ENSPSNG00000016108) #24	PRMT2 (ENSPSNG00000016182) #25	ENSPSNG00000016334
Pecora	ANCESTRAL SPECIES	8	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.p.a	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00960000186612.A.p.b	ENSGT00940000159602.c.b	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d	ENSGT00510000046499.`c.a.c.a.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541	ENSGT00390000016421.b.a
Yarkand deer	MODERN SPECIES	10	ITGB2 (ENSCHYG00000013305) #7	SLX9 (ENSCHYG00000013417) #8	ADARB1 (ENSCHYG00000013492) #9	POFUT2 (ENSCHYG00000013580) #10	ENSCHYG00000013809	SLC19A1 (ENSCHYG00000014939) #12	PCBP3 (ENSCHYG00000015231) #13	ENSCHYG00000015578	COL6A1 (ENSCHYG00000015735) #14	COL6A2 (ENSCHYG00000016288) #15	FTCD (ENSCHYG00000017995) #16	SPATC1L (ENSCHYG00000018089) #17	LSS (ENSCHYG00000018157) #18	MCM3AP (ENSCHYG00000018660) #19	YBEY (ENSCHYG00000019060) #20	PCNT (ENSCHYG00000019684) #22	DIP2A (ENSCHYG00000021088) #23	S100B (ENSCHYG00000022569) #24	PRMT2 (ENSCHYG00000022622) #25	ENSCHYG00000022791	FBXO25 (ENSCHYG00000022825)	TDRP (ENSCHYG00000022964)	ENSCHYG00000023002	ENSCHYG00000023032	RUNX1 (ENSCHYG00000023067)	SETD4 (ENSCHYG00000023190)	ENSCHYG00000023267	ENSCHYG00000023358	ENSCHYG00000023378	ENSCHYG00000023406	DOP1B (ENSCHYG00000023458)
Percora_a	ANCESTRAL SPECIES	7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00960000186612.A.p.b	ENSGT00940000159602.c.a	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d	ENSGT00510000046499.`c.a.c.a.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541	ENSGT00390000016421.b.a
Siberian musk deer	MODERN SPECIES	1185	SLX9 (ENSMMSG00000012926) #8	ENSMMSG00000012948	ADARB1 (ENSMMSG00000012958) #9	POFUT2 (ENSMMSG00000012988) #10	COL18A1 (ENSMMSG00000013041) #11	SLC19A1 (ENSMMSG00000013111) #12	PCBP3 (ENSMMSG00000013149) #13	ENSMMSG00000013267	ENSMMSG00000013286	COL6A2 (ENSMMSG00000013324) #15	FTCD (ENSMMSG00000012880) #16	SPATC1L (ENSMMSG00000012984) #17	LSS (ENSMMSG00000013009) #18	MCM3AP (ENSMMSG00000013071) #19	YBEY (ENSMMSG00000013126) #20	PCNT (ENSMMSG00000013234) #22	DIP2A (ENSMMSG00000013513) #23	S100B (ENSMMSG00000013818) #24	PRMT2 (ENSMMSG00000013848) #25	ENSMMSG00000013903	FBXO25 (ENSMMSG00000013966)	TDRP (ENSMMSG00000014000)	ENSMMSG00000014024	RUNX1 (ENSMMSG00000014047)	SETD4 (ENSMMSG00000014122)	ENSMMSG00000014178	ENSMMSG00000014188	CBR3 (ENSMMSG00000014250)	DOP1B (ENSMMSG00000014259)	MORC3 (ENSMMSG00000014310)	CHAF1B (ENSMMSG00000014326)
Bovidae	ANCESTRAL SPECIES	9	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00960000186612.A.p.a	ENSGT00940000159602.c.a	ENSGT00940000159602.d	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d	ENSGT00510000046499.`c.a.c.a.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541
Bovinae	ANCESTRAL SPECIES	6	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00960000186612.A.p.a.a	ENSGT00940000159602.c.a	ENSGT00940000159602.d	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d	ENSGT00510000046499.`c.a.c.a.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541
American bison	MODERN SPECIES	2975	ITGB2 (ENSBBBG00000003799) #7	SLX9 (ENSBBBG00000003802) #8	ADARB1 (ENSBBBG00000001357) #9	ENSBBBG00000001345 #10	ENSBBBG00000001334 #10	ENSBBBG00000001319 #11	SLC19A1 (ENSBBBG00000001312) #12	PCBP3 (ENSBBBG00000015403) #13	COL6A1 (ENSBBBG00000015494) #14	COL6A2 (ENSBBBG00000015610) #15	FTCD (ENSBBBG00000015621) #16	SPATC1L (ENSBBBG00000015631) #17	LSS (ENSBBBG00000002644) #18	MCM3AP (ENSBBBG00000015748) #19	YBEY (ENSBBBG00000015798) #20	ENSBBBG00000003968 #22	DIP2A (ENSBBBG00000016225) #23	S100B (ENSBBBG00000016247) #24	PRMT2 (ENSBBBG00000016343) #25	ENSBBBG00000016361	FBXO25 (ENSBBBG00000016404)	TDRP (ENSBBBG00000016413)	ENSBBBG00000016420	ENSBBBG00000016432	RUNX1 (ENSBBBG00000016523)	SETD4 (ENSBBBG00000016605)	ENSBBBG00000007614	ENSBBBG00000016692	ENSBBBG00000006958	DOP1B (ENSBBBG00000016914)	MORC3 (ENSBBBG00000016952)
Bos	ANCESTRAL SPECIES	7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.f	ENSGT00390000017888	ENSGT00960000186612.A.p.a.a	ENSGT00940000159602.c.a	ENSGT00940000159602.d	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d	ENSGT00510000046499.`c.a.c.a.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541
Bos_a	ANCESTRAL SPECIES	5	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.e	ENSGT00390000017888	ENSGT00960000186612.A.p.a.a	ENSGT00940000159602.d	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d	ENSGT00390000016421.b.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541	ENSGT00940000160495
Wild yak	MODERN SPECIES	1401									COL6A1 (ENSBMUG00000019539) #14	COL6A2 (ENSBMUG00000019350) #15	FTCD (ENSBMUG00000019201) #16	SPATC1L (ENSBMUG00000019099) #17	LSS (ENSBMUG00000019069) #18	MCM3AP (ENSBMUG00000018534) #19	YBEY (ENSBMUG00000018009) #20	PCNT (ENSBMUG00000017747) #22	DIP2A (ENSBMUG00000017386) #23	S100B (ENSBMUG00000017272) #24	PRMT2 (ENSBMUG00000017225) #25	FBXO25 (ENSBMUG00000017147)	TDRP (ENSBMUG00000017069)	ENSBMUG00000017055
Bos_b	ANCESTRAL SPECIES	5	ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b	ENSGT00390000004915.b.f	ENSGT00390000017888	ENSGT00960000186612.A.p.a.b	ENSGT00960000186612.A.p.a.a	ENSGT00940000159602.c.a	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499.`c.a.d.c	ENSGT00510000046499.`c.a.c.a.a	ENSGT00510000046499.`c.a.c.a.b	ENSGT00940000162541
Cow	MODERN SPECIES		SLX9 (ENSBTAG00000017010) #8	ADARB1 (ENSBTAG00000017486) #9	POFUT2 (ENSBTAG00000007818) #10	COL18A1 (ENSBTAG00000023907) #11	SLC19A1 (ENSBTAG00000024162) #12	PCBP3 (ENSBTAG00000030775) #13	ENSBTAG00000048318	COL6A1 (ENSBTAG00000011802)	COL6A2 (ENSBTAG00000019269) #15	FTCD (ENSBTAG00000020404) #16	SPATC1L (ENSBTAG00000020409) #17	LSS (ENSBTAG00000018936) #18	MCM3AP (ENSBTAG00000003148) #19	YBEY (ENSBTAG00000003161) #20	C1H21orf58 (ENSBTAG00000021984)	PCNT (ENSBTAG00000030670) #22	DIP2A (ENSBTAG00000011495) #23	S100B (ENSBTAG00000004777) #24	PRMT2 (ENSBTAG00000005503) #25	ENSBTAG00000052513	FBXO25 (ENSBTAG00000007039)	TDRP (ENSBTAG00000043957)	ENSBTAG00000052599	ENSBTAG00000053000	ENSBTAG00000046447	RUNX1 (ENSBTAG00000004742)	SETD4 (ENSBTAG00000018682)	CBR1 (ENSBTAG00000023384)	ENSBTAG00000052342	MGC127133 (ENSBTAG00000030629)	CBR3 (ENSBTAG00000018688)
Hybrid Bos Indicus	MODERN SPECIES		PTTG1IP (ENSBIXG00005019381)	ITGB2 (ENSBIXG00005019335) #7	SLX9 (ENSBIXG00005019260) #8	ADARB1 (ENSBIXG00005019197) #9	POFUT2 (ENSBIXG00005019083) #10	COL18A1 (ENSBIXG00005018920) #11	SLC19A1 (ENSBIXG00005018773) #12	PCBP3 (ENSBIXG00005018711) #13	ENSBIXG00005018619	COL6A2 (ENSBIXG00005006450) #15	FTCD (ENSBIXG00005018494) #16	SPATC1L (ENSBIXG00005018481) #17	LSS (ENSBIXG00005018442) #18	MCM3AP (ENSBIXG00005018185) #19	YBEY (ENSBIXG00005018157) #20	ENSBIXG00005018060 #22	DIP2A (ENSBIXG00005002893) #23	S100B (ENSBIXG00005017738) #24	PRMT2 (ENSBIXG00005017685) #25	ENSBIXG00005002856	FBXO25 (ENSBIXG00005017564)	ENSBIXG00005017443	ENSBIXG00005017410	ENSBIXG00005017402	ENSBIXG00005017394	RUNX1 (ENSBIXG00005005427)	SETD4 (ENSBIXG00005017211)	ENSBIXG00005017175	ENSBIXG00005017141	ENSBIXG00005017110	ENSBIXG00005017086
Camelidae	ANCESTRAL SPECIES		ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24
Arabian camel	MODERN SPECIES		PTTG1IP (ENSCDRG00005021882)	ITGB2 (ENSCDRG00005021886) #7	SLX9 (ENSCDRG00005021887) #8	ADARB1 (ENSCDRG00005021888) #9	ENSCDRG00005021889 #10	ENSCDRG00005021890 #11	ENSCDRG00005021892 #12	ENSCDRG00005021894	ENSCDRG00005021895	COL6A2 (ENSCDRG00005021902) #15	FTCD (ENSCDRG00005021903) #16	SPATC1L (ENSCDRG00005021904) #17	LSS (ENSCDRG00005021905) #18	MCM3AP (ENSCDRG00005021907) #19	ENSCDRG00005000062 #20	PCNT (ENSCDRG00005000201) #22	DIP2A (ENSCDRG00005000971) #23	S100B (ENSCDRG00005006127) #24	ENSCDRG00005006148	PRMT2 (ENSCDRG00005006179) #25
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Carnivora	ANCESTRAL SPECIES	10	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Caniformia	ANCESTRAL SPECIES		ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Canidae	ANCESTRAL SPECIES	39	ENSGT00390000004977	ENSGT01090000259987.a.a.a.i #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A
Canis_lupus	ANCESTRAL SPECIES	38	ENSGT00390000004977	ENSGT01090000259987.a.a.a.i #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00960000186612.A.h
Dingo	MODERN SPECIES	63	PTTG1IP (ENSCAFG00020019438)	ITGB2 (ENSCAFG00020019439) #7	SLX9 (ENSCAFG00020019440) #8	ADARB1 (ENSCAFG00020019446) #9	POFUT2 (ENSCAFG00020019455) #10	ENSCAFG00020019463 #11	SLC19A1 (ENSCAFG00020019465) #12	ENSCAFG00020019472	ENSCAFG00020019481	COL6A2 (ENSCAFG00020019491) #15	FTCD (ENSCAFG00020019496) #16	SPATC1L (ENSCAFG00020019504) #17	LSS (ENSCAFG00020019508) #18	MCM3AP (ENSCAFG00020019509) #19	YBEY (ENSCAFG00020019514) #20	PCNT (ENSCAFG00020019525) #22	DIP2A (ENSCAFG00020019589) #23	S100B (ENSCAFG00020020683) #24	ENSCAFG00020020694 #25	ENSCAFG00020020719
Dog	MODERN SPECIES	24	PTTG1IP (ENSCAFG00845021456)	ITGB2 (ENSCAFG00845021592) #7	SLX9 (ENSCAFG00845021885) #8	ADARB1 (ENSCAFG00845021975) #9	POFUT2 (ENSCAFG00845022063) #10	COL18A1 (ENSCAFG00845022231) #11	ENSCAFG00845023388 #12	PCBP3 (ENSCAFG00845023560) #13	COL6A1 (ENSCAFG00845024031) #14	COL6A2 (ENSCAFG00845024255) #15	FTCD (ENSCAFG00845024727) #16	SPATC1L (ENSCAFG00845024849) #17	LSS (ENSCAFG00845024919) #18	MCM3AP (ENSCAFG00845025335) #19	ENSCAFG00845026433 #20	PCNT (ENSCAFG00845026638) #22	DIP2A (ENSCAFG00845027435) #23	ENSCAFG00845027798 #25
Red fox	MODERN SPECIES	209	PTTG1IP (ENSVVUG00000023922)	ENSVVUG00000023920 #7	ENSVVUG00000023917 #7	ENSVVUG00000023915 #8	ADARB1 (ENSVVUG00000023911) #9	POFUT2 (ENSVVUG00000023908) #10	SLC19A1 (ENSVVUG00000023875) #12	PCBP3 (ENSVVUG00000023862) #13	ENSVVUG00000023855	COL6A2 (ENSVVUG00000023847) #15	FTCD (ENSVVUG00000023843) #16	SPATC1L (ENSVVUG00000023836) #17	LSS (ENSVVUG00000023711) #18	MCM3AP (ENSVVUG00000022975) #19	YBEY (ENSVVUG00000022948) #20	PCNT (ENSVVUG00000022919) #22	DIP2A (ENSVVUG00000020602) #23	S100B (ENSVVUG00000020498) #24	PRMT2 (ENSVVUG00000020492) #25
Caniformia_b	ANCESTRAL SPECIES		ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Ursidae	ANCESTRAL SPECIES	1	ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Ursus	ANCESTRAL SPECIES	94	ENSGT00940000158193	ENSGT00950000182895.a.b.j	ENSGT00390000004977	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000162185 #13	ENSGT00950000183546	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a.m #23	ENSGT00530000064552	ENSGT00940000160683 #25
Polar bear	MODERN SPECIES	394	UBE2G2 (ENSUMAG00000025420)	ENSUMAG00000025419	PTTG1IP (ENSUMAG00000025418)	ITGB2 (ENSUMAG00000025417) #7	SLX9 (ENSUMAG00000025416) #8	ADARB1 (ENSUMAG00000025411) #9	POFUT2 (ENSUMAG00000025410) #10	PCBP3 (ENSUMAG00000025403) #13	ENSUMAG00000025402	COL6A2 (ENSUMAG00000025399) #15	FTCD (ENSUMAG00000025398) #16	ENSUMAG00000025397 #17	LSS (ENSUMAG00000025396) #18	MCM3AP (ENSUMAG00000025237) #19	YBEY (ENSUMAG00000025236) #20	PCNT (ENSUMAG00000025235) #22	DIP2A (ENSUMAG00000025037) #23	ENSUMAG00000025034	PRMT2 (ENSUMAG00000025033) #25
Mustelinae	ANCESTRAL SPECIES	67	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Ferret	MODERN SPECIES	506						ENSMPUG00000001779	COL6A1 (ENSMPUG00000001622) #14	ENSMPUG00000001618	ENSMPUG00000001614	COL6A2 (ENSMPUG00000001453) #15	FTCD (ENSMPUG00000001372) #16	SPATC1L (ENSMPUG00000001368) #17	LSS (ENSMPUG00000001364) #18	MCM3AP (ENSMPUG00000001353) #19	ENSMPUG00000001351 #21	PCNT (ENSMPUG00000001345) #22	DIP2A (ENSMPUG00000001339) #23	S100B (ENSMPUG00000001336) #24	PRMT2 (ENSMPUG00000001331) #25
American mink	MODERN SPECIES	122	SLX9 (ENSNVIG00000008023) #8	ADARB1 (ENSNVIG00000008112) #9	ENSNVIG00000008191 #10	ENSNVIG00000008211 #10	ENSNVIG00000008220 #10	ENSNVIG00000008255 #11	ENSNVIG00000008290	PCBP3 (ENSNVIG00000008330) #13	COL6A1 (ENSNVIG00000008572) #14	ENSNVIG00000008753 #15	FTCD (ENSNVIG00000008760) #16	SPATC1L (ENSNVIG00000008811) #17	LSS (ENSNVIG00000008849) #18	MCM3AP (ENSNVIG00000008876) #19	YBEY (ENSNVIG00000008998) #20	ENSNVIG00000009125 #22	DIP2A (ENSNVIG00000009214) #23	S100B (ENSNVIG00000009347) #24	PRMT2 (ENSNVIG00000009362) #25
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Chiroptera	ANCESTRAL SPECIES	35	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00960000191015	ENSGT00940000162768.B	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Microchiroptera	ANCESTRAL SPECIES	37	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00960000191015	ENSGT00940000162768.B	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Microbat	MODERN SPECIES	1538									COL6A2 (ENSMLUG00000015413) #15	FTCD (ENSMLUG00000017344) #16	SPATC1L (ENSMLUG00000017345) #17	LSS (ENSMLUG00000010452) #18	ENSMLUG00000010492 #19	YBEY (ENSMLUG00000024183) #20	ENSMLUG00000007442 #21	PCNT (ENSMLUG00000007473) #22	DIP2A (ENSMLUG00000007571) #23	ENSMLUG00000022882 #24
Megabat	MODERN SPECIES	1691															ENSPVAG00000004899 #21	PCNT (ENSPVAG00000004904) #22
Equus	ANCESTRAL SPECIES	13	ENSGT01090000259987.a.a.a #7	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Donkey	MODERN SPECIES	9	ENSEASG00005032799 #7	SLX9 (ENSEASG00005023956) #8	ADARB1 (ENSEASG00005007085) #9	POFUT2 (ENSEASG00005007081) #10	COL18A1 (ENSEASG00005038430) #11	SLC19A1 (ENSEASG00005007070) #12	PCBP3 (ENSEASG00005007068) #13	COL6A1 (ENSEASG00005035660) #14	COL6A2 (ENSEASG00005007037) #15	FTCD (ENSEASG00005007018) #16	SPATC1L (ENSEASG00005007013) #17	LSS (ENSEASG00005006856) #18	ENSEASG00005006445 #20	MCM3AP (ENSEASG00005006458) #19	ENSEASG00005025745 #21	PCNT (ENSEASG00005006433) #22	DIP2A (ENSEASG00005002841) #23	S100B (ENSEASG00005028449) #24	ENSEASG00005002664 #25	ENSEASG00005012665	ENSEASG00005012661	SH2D4A (ENSEASG00005012656)	CSGALNACT1 (ENSEASG00005012653)	ENSEASG00005012646	ENSEASG00005012623	POMK (ENSEASG00005027446)	FNTA (ENSEASG00005012598)	ENSEASG00005012593	HOOK3 (ENSEASG00005012586)	RNF170 (ENSEASG00005012584)	THAP1 (ENSEASG00005031827)
Horse	MODERN SPECIES	18	ADARB1 (ENSECAG00000019917) #9	POFUT2 (ENSECAG00000004992) #10	COL18A1 (ENSECAG00000016361) #11	SLC19A1 (ENSECAG00000002116) #12	PCBP3 (ENSECAG00000012413) #13	ENSECAG00000047101	COL6A1 (ENSECAG00000022731) #14	COL6A2 (ENSECAG00000019436) #15	FTCD (ENSECAG00000011979) #16	SPATC1L (ENSECAG00000006870) #17	LSS (ENSECAG00000008899) #18	ENSECAG00000047281	MCM3AP (ENSECAG00000018980) #19	YBEY (ENSECAG00000019348) #20	ENSECAG00000049237 #21	PCNT (ENSECAG00000022455) #22	ENSECAG00000048453	DIP2A (ENSECAG00000052329) #23	S100B (ENSECAG00000012395) #24	PRMT2 (ENSECAG00000012406) #25
Atlantogenata	ANCESTRAL SPECIES	141		ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25	ENSGT00940000154486.b.a.a.b
Xenarthra	ANCESTRAL SPECIES	366								ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00940000160683 #25
Sloth	MODERN SPECIES	4752																ENSCHOG00000005237 #22
Armadillo	MODERN SPECIES	4624								ENSDNOG00000043275	COL6A2 (ENSDNOG00000038020) #15	FTCD (ENSDNOG00000046455) #16	SPATC1L (ENSDNOG00000039388) #17	LSS (ENSDNOG00000000135) #18	MCM3AP (ENSDNOG00000006842) #19	YBEY (ENSDNOG00000037393) #20	ENSDNOG00000044870 #21	PCNT (ENSDNOG00000024519) #22	ENSDNOG00000040085	ENSDNOG00000046721 #23	S100B (ENSDNOG00000045806) #24	ENSDNOG00000017401 #25
Afrotheria	ANCESTRAL SPECIES	177		ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23
Afrotheria_a	ANCESTRAL SPECIES	179		ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162185 #13	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23
Elephant	MODERN SPECIES	62		SLX9 (ENSLAFG00000010542) #8	ADARB1 (ENSLAFG00000007480) #9	POFUT2 (ENSLAFG00000011888) #10	COL18A1 (ENSLAFG00000017396) #11	SLC19A1 (ENSLAFG00000018599) #12	PCBP3 (ENSLAFG00000020835) #13	ENSLAFG00000010458	COL6A2 (ENSLAFG00000001954) #15	FTCD (ENSLAFG00000030714) #16	LSS (ENSLAFG00000003317) #18	ENSLAFG00000025926 #19	ENSLAFG00000003323 #19	YBEY (ENSLAFG00000031106) #20	ENSLAFG00000025881 #21	PCNT (ENSLAFG00000017965) #22	DIP2A (ENSLAFG00000017975) #23
Hyrax	MODERN SPECIES	4385																ENSPCAG00000002865 #22
Tenrec	MODERN SPECIES	8796															YBEY (ENSETEG00000018449) #20	ENSETEG00000018451 #22
Marsupialia	ANCESTRAL SPECIES	31	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322.h #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25	ENSGT00940000161997.a #24	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00940000163820	ENSGT00940000163976	ENSGT00940000157267	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000160639
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162185 #13	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322.h #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25	ENSGT00940000161997.a #24	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00940000163820	ENSGT00940000163976	ENSGT00940000157267	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b
Diprotodontia	ANCESTRAL SPECIES	73	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322.h #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25	ENSGT00940000161997.a #24	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000160639	ENSGT00390000013151.a.a
Diprotodontia_a	ANCESTRAL SPECIES	70	ENSGT00390000015709 #8	ENSGT00940000155992 #9	ENSGT00390000007989 #10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322.h #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25	ENSGT00940000161997.a #24	ENSGT00390000009001	ENSGT00940000160270	ENSGT00940000159677.d	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000160639	ENSGT00390000013151.a.a
Common wonbat	MODERN SPECIES	754	ENSVURG00010024045 #8	ADARB1 (ENSVURG00010024046) #9	ENSVURG00010024049 #10	ENSVURG00010024050 #10	ENSVURG00010024054 #11	SLC19A1 (ENSVURG00010024057) #12	ENSVURG00010024058	ENSVURG00010024060	COL6A2 (ENSVURG00010024064) #15	FTCD (ENSVURG00010024070) #16	SPATC1L (ENSVURG00010024072) #17	LSS (ENSVURG00010024074) #18	MCM3AP (ENSVURG00010024078) #19	YBEY (ENSVURG00010024080) #20	ENSVURG00010024082 #21	ENSVURG00010024091 #22	DIP2A (ENSVURG00010024120) #23	PRMT2 (ENSVURG00010024125) #25	S100B (ENSVURG00010024133) #24	ENSVURG00010024134	TRPM8 (ENSVURG00010024178)	ENSVURG00010024372
Wallaby	MODERN SPECIES	6493																ENSMEUG00000007730 #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000001385	ENSSHAG00000027202	ENSSHAG00000021176	ITGB2 (ENSSHAG00000026803) #7	ADARB1 (ENSSHAG00000031177) #9	POFUT2 (ENSSHAG00000005611) #10	COL18A1 (ENSSHAG00000000750) #11	PCBP3 (ENSSHAG00000007890) #13	COL6A1 (ENSSHAG00000008873) #14	ENSSHAG00000028129 #15	FTCD (ENSSHAG00000003460) #16	SPATC1L (ENSSHAG00000003976) #17	LSS (ENSSHAG00000004524) #18	ENSSHAG00000005045 #19	ENSSHAG00000023584 #21	ENSSHAG00000006209 #22	ENSSHAG00000007437 #23	ENSSHAG00000025431 #25	ENSSHAG00000025078 #24	ENSSHAG00000004807	ENSSHAG00000003180	ENSSHAG00000000317	UGT1A1 (ENSSHAG00000001438)	ENSSHAG00000004731	ENSSHAG00000005142	HDAC4 (ENSSHAG00000004439)	TWIST2 (ENSSHAG00000003328)	ENSSHAG00000007519	ENSSHAG00000030077	ENSSHAG00000009352	ENSSHAG00000010002
Opossum	MODERN SPECIES	1	TBCCD1 (ENSMODG00000013298)	CRYGS (ENSMODG00000013295)	ENSMODG00000013291	DGKG (ENSMODG00000023132)	ETV5 (ENSMODG00000013273)	ENSMODG00000039909	ENSMODG00000036464	ENSMODG00000048684	TRA2B (ENSMODG00000013248)	ENSMODG00000037655 #16	SPATC1L (ENSMODG00000008502) #17	LSS (ENSMODG00000008489) #18	MCM3AP (ENSMODG00000008187) #19	YBEY (ENSMODG00000008458) #20	ENSMODG00000046878 #19	ENSMODG00000008392 #22	DIP2A (ENSMODG00000008324) #23	ENSMODG00000008071	ENSMODG00000008038	ENSMODG00000041690	UGT1A6 (ENSMODG00000007963)	ENSMODG00000046309	ENSMODG00000007745	NDUFA10 (ENSMODG00000007705)	ENSMODG00000008969	RAB17 (ENSMODG00000043415)	LRRFIP1 (ENSMODG00000008928)	ENSMODG00000008910	ENSMODG00000041903	UBE2F (ENSMODG00000008841)	ENSMODG00000008516
Platypus	MODERN SPECIES	18	ADARB1 (ENSOANG00000012491) #9	POFUT2 (ENSOANG00000012784) #10	ENSOANG00000043147 #11	ENSOANG00000000668 #12	ENSOANG00000006265	ENSOANG00000006264	COL6A2 (ENSOANG00000013567) #15	ENSOANG00000046435 #15	FTCD (ENSOANG00000013566) #16	ENSOANG00000000806 #17	LSS (ENSOANG00000013565) #18	MCM3AP (ENSOANG00000013563) #19	YBEY (ENSOANG00000038356) #20	ENSOANG00000028261 #19	ENSOANG00000013561 #21	ENSOANG00000020123 #22	DIP2A (ENSOANG00000013554) #23	ENSOANG00000041326	PRMT2 (ENSOANG00000013551) #25	S100B (ENSOANG00000013550) #24	ENSOANG00000013548	NDUFA10 (ENSOANG00000002908)	HDAC4 (ENSOANG00000012951)	TWIST2 (ENSOANG00000012950)	ASB1 (ENSOANG00000044852)	ENSOANG00000049765	TRAF3IP1 (ENSOANG00000012754)	USP40 (ENSOANG00000012752)	ENSOANG00000012751	TRPM8 (ENSOANG00000012747)	ENSOANG00000049582
Sauria	ANCESTRAL SPECIES	71	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000162889 #14	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24
Archelosauria	ANCESTRAL SPECIES	57								ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01030000235951	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT00940000162889 #14	ENSGT01030000235116	ENSGT00940000163601	ENSGT00950000183546	ENSGT00940000162768.B	ENSGT00940000162185 #13	ENSGT00950000183022.b #12	ENSGT00940000158212.B #11	ENSGT00940000167200
Archosauria	ANCESTRAL SPECIES	61								ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01030000235951	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT00940000162889 #14	ENSGT01030000235116	ENSGT00940000163601	ENSGT00940000162768.B	ENSGT00950000183022.b #12	ENSGT00940000158212.B #11	ENSGT00940000167200
Aves	ANCESTRAL SPECIES	63	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01030000235951	ENSGT00390000011570 #18
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a	ENSGT00940000161997.a #24	ENSGT00390000011570 #18
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a	ENSGT00940000161997.a #24	ENSGT00390000011570 #18
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00390000006303	ENSGT00940000155675	ENSGT00940000161229	ENSGT00940000156186	ENSGT00940000160767	ENSGT00940000159898	ENSGT00950000183184.a.a	ENSGT00940000158361	ENSGT00390000015818	ENSGT00940000160909	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005923	ENSGT00940000156472	ENSGT00390000016619.a	ENSGT00940000160494	ENSGT00940000156597.b	ENSGT00640000091496	ENSGT00390000001447	ENSGT00530000063688.a	ENSGT00940000157652	ENSGT01030000234570.d.a	ENSGT00530000063186.b.b	ENSGT00960000189051
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00390000006303	ENSGT00940000155675	ENSGT00940000161229	ENSGT00940000156186	ENSGT00940000160767	ENSGT00940000159898	ENSGT00950000183184.a.a	ENSGT00940000158361	ENSGT00390000015818	ENSGT00940000160909	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00940000160596.a.a.a.a.a	ENSGT00390000005923	ENSGT00940000156472	ENSGT00390000016619.a	ENSGT00940000160494	ENSGT00940000156597.b	ENSGT00640000091496	ENSGT00390000001447	ENSGT00530000063688.a	ENSGT00940000157652	ENSGT01030000234570.d.a	ENSGT00530000063186.b.b
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00390000006303	ENSGT00940000155675	ENSGT00940000161229	ENSGT00940000156186	ENSGT00940000160767	ENSGT00940000159898	ENSGT00950000183184.a.a	ENSGT00940000158361	ENSGT00390000015818	ENSGT00940000160909	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00940000160596.a.a.a.a.a	ENSGT00390000005923	ENSGT00940000156472	ENSGT00390000016619.a	ENSGT00940000160494	ENSGT00940000156597.b	ENSGT00640000091496	ENSGT00390000001447	ENSGT00530000063688.a	ENSGT00940000157652	ENSGT01030000234570.d.a	ENSGT00530000063186.b.b
Medium ground finch	MODERN SPECIES	204											ZNF804A (ENSGFOG00000004146)	ADARB1 (ENSGFOG00000004159) #9	ENSGFOG00000004187 #8	ITGB2 (ENSGFOG00000004199) #7	KMO (ENSGFOG00000004251)	PCNT (ENSGFOG00000004316) #22	DIP2A (ENSGFOG00000004384) #23	S100B (ENSGFOG00000004493) #24	LSS (ENSGFOG00000004503) #18
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00390000006303	ENSGT00940000155675	ENSGT00940000161229	ENSGT00940000156186	ENSGT00940000160767	ENSGT00940000159898	ENSGT00950000183184.a.a	ENSGT00940000158361	ENSGT00390000015818	ENSGT00940000160909	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00940000160596.a.a.a.a.a	ENSGT00390000005923	ENSGT00940000156472	ENSGT00390000016619.a	ENSGT00940000160494	ENSGT00940000156597.b	ENSGT00640000091496	ENSGT00390000001447	ENSGT00530000063688.a	ENSGT00940000157652	ENSGT01030000234570.d.a	ENSGT00530000063186.b.b
Zebra finch	MODERN SPECIES	29	COL5A2 (ENSTGUG00000010924)	COL3A1 (ENSTGUG00000010995)	GULP1 (ENSTGUG00000011065)	TFPI (ENSTGUG00000011074)	CALCRL (ENSTGUG00000011077)	FAM171B (ENSTGUG00000027610)	ITGAV (ENSTGUG00000011101)	ZC3H15 (ENSTGUG00000011131)	ENSTGUG00000011144	ZNF804A (ENSTGUG00000011155)	ADARB1 (ENSTGUG00000011159) #9	ENSTGUG00000011170 #8	ITGB2 (ENSTGUG00000011172) #7	KMO (ENSTGUG00000011204)	C21orf58 (ENSTGUG00000011218) #21	PCNT (ENSTGUG00000028465) #22	DIP2A (ENSTGUG00000011224) #23	LSS (ENSTGUG00000011260) #18	ENSTGUG00000024434	NUP35 (ENSTGUG00000011278)	DUSP19 (ENSTGUG00000011298)	NCKAP1 (ENSTGUG00000011303)	FRZB (ENSTGUG00000011320)	MAP2 (ENSTGUG00000011322)	UNC80 (ENSTGUG00000011342)	ENSTGUG00000011373	KANSL1L (ENSTGUG00000011385)	ACADL (ENSTGUG00000011392)	MYL1 (ENSTGUG00000011416)	LANCL1 (ENSTGUG00000011434)	CPS1 (ENSTGUG00000011444)
Common canary	MODERN SPECIES	8	ENSSCAG00000004006	GULP1 (ENSSCAG00000004016)	ENSSCAG00000004026	ENSSCAG00000004031	ENSSCAG00000004041	FAM171B (ENSSCAG00000004045)	ITGAV (ENSSCAG00000004053)	ENSSCAG00000004061	ENSSCAG00000004067	ZNF804A (ENSSCAG00000004071)	ENSSCAG00000004092	ADARB1 (ENSSCAG00000004097) #9	ENSSCAG00000004115 #8	ITGB2 (ENSSCAG00000004125) #7	KMO (ENSSCAG00000004131)	PCNT (ENSSCAG00000004141) #22	DIP2A (ENSSCAG00000004156) #23	S100B (ENSSCAG00000004165) #24	LSS (ENSSCAG00000004170) #18	NUP35 (ENSSCAG00000004179)	DUSP19 (ENSSCAG00000004181)	NCKAP1 (ENSSCAG00000004188)	ENSSCAG00000004208	ENSSCAG00000004229	UNC80 (ENSSCAG00000004263)	ENSSCAG00000004371	KANSL1L (ENSSCAG00000004376)	ACADL (ENSSCAG00000004392)	MYL1 (ENSSCAG00000004398)	LANCL1 (ENSSCAG00000004404)	ENSSCAG00000004409
Flycatcher	MODERN SPECIES	26	ENSFALG00000027845	ENSFALG00000004460	ENSFALG00000026249	GULP1 (ENSFALG00000025373)	TFPI (ENSFALG00000024461)	CALCRL (ENSFALG00000004495)	FAM171B (ENSFALG00000004496)	ITGAV (ENSFALG00000004514)	ZC3H15 (ENSFALG00000022951)	ENSFALG00000004578	ADARB1 (ENSFALG00000013340) #9	ENSFALG00000013336 #8	ITGB2 (ENSFALG00000013331) #7	ENSFALG00000013328	C21orf58 (ENSFALG00000013322) #21	PCNT (ENSFALG00000013314) #22	DIP2A (ENSFALG00000013301) #23	S100B (ENSFALG00000024643) #24	ENSFALG00000013215 #18	ENSFALG00000013178	NUP35 (ENSFALG00000013175)	DUSP19 (ENSFALG00000026219)	NCKAP1 (ENSFALG00000013164)	FRZB (ENSFALG00000013151)	MAP2 (ENSFALG00000024297)	UNC80 (ENSFALG00000013122)	ENSFALG00000013112	KANSL1L (ENSFALG00000013107)	ACADL (ENSFALG00000013095)	MYL1 (ENSFALG00000013083)	LANCL1 (ENSFALG00000013076)
Great tit	MODERN SPECIES	27	COL5A2 (ENSPMJG00000008204)	ENSPMJG00000008202	GULP1 (ENSPMJG00000008195)	TFPI (ENSPMJG00000008157)	CALCRL (ENSPMJG00000008154)	FAM171B (ENSPMJG00000008106)	ITGAV (ENSPMJG00000008102)	ZC3H15 (ENSPMJG00000008101)	ZNF804A (ENSPMJG00000008076)	ADARB1 (ENSPMJG00000008049) #9	SLX9 (ENSPMJG00000008046) #8	ITGB2 (ENSPMJG00000008041) #7	ENSPMJG00000008038	KMO (ENSPMJG00000008027)	C21orf58 (ENSPMJG00000008021) #21	PCNT (ENSPMJG00000008007) #22	DIP2A (ENSPMJG00000007969) #23	LSS (ENSPMJG00000007863) #18	NUP35 (ENSPMJG00000007860)	DUSP19 (ENSPMJG00000007859)	NCKAP1 (ENSPMJG00000007857)	FRZB (ENSPMJG00000007853)	MAP2 (ENSPMJG00000007838)	UNC80 (ENSPMJG00000007818)	ENSPMJG00000007800	KANSL1L (ENSPMJG00000007796)	ACADL (ENSPMJG00000007795)	MYL1 (ENSPMJG00000007793)	LANCL1 (ENSPMJG00000007791)	CPS1 (ENSPMJG00000007044)	ERBB4 (ENSPMJG00000007008)
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a	ENSGT00940000161997.a #24	ENSGT00390000011570 #18
Golden eagle	MODERN SPECIES	22	SLC19A1 (ENSACCG00020011933) #12	ENSACCG00020011897	ENSACCG00020011863	COL6A2 (ENSACCG00020011711) #15	FTCD (ENSACCG00020011658) #16	ENSACCG00020011632	ENSACCG00020011567	MCM3AP (ENSACCG00020011305) #19	YBEY (ENSACCG00020011066) #20	POFUT2 (ENSACCG00020011041) #10	ADARB1 (ENSACCG00020010987) #9	SLX9 (ENSACCG00020010969) #8	ITGB2 (ENSACCG00020010936) #7	KMO (ENSACCG00020010917)	C21orf58 (ENSACCG00020010903) #21	PCNT (ENSACCG00020010826) #22	DIP2A (ENSACCG00020010702) #23	ENSACCG00020010675	S100B (ENSACCG00020010663) #24	LSS (ENSACCG00020010640) #18	ENSACCG00020010625	ENSACCG00020010612	LACTBL1 (ENSACCG00020010600)	EPHB2 (ENSACCG00020010571)	C1QB (ENSACCG00020010548)	C1QC (ENSACCG00020010539)	C1QA (ENSACCG00020010525)	EPHA8 (ENSACCG00020010483)	ZBTB40 (ENSACCG00020010404)	WNT4 (ENSACCG00020010391)	CDC42 (ENSACCG00020010380)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a	ENSGT00940000161997.a #24	ENSGT00390000011570 #18
Anatidae	ANCESTRAL SPECIES	10	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005159	ENSGT00940000156444	ENSGT00940000155861.C	ENSGT00940000159606	ENSGT00940000158239.b	ENSGT00940000154319	ENSGT00940000153534.A	ENSGT00940000156449	ENSGT00950000183046.a.a	ENSGT00930000150950.b	ENSGT00390000013916
Pink-footed goose	MODERN SPECIES	120										ENSABRG00000015106 #9	ENSABRG00000015109 #9	ENSABRG00000015127 #8	ITGB2 (ENSABRG00000015145) #7	KMO (ENSABRG00000015152)	C21orf58 (ENSABRG00000015157) #21	PCNT (ENSABRG00000015167) #22	DIP2A (ENSABRG00000015208) #23	ENSABRG00000015533	S100B (ENSABRG00000015550) #24	LSS (ENSABRG00000015601) #18	TMEM237 (ENSABRG00000015767)	MPP4 (ENSABRG00000015774)	ALS2 (ENSABRG00000016154)	CDK15 (ENSABRG00000016478)	FZD7 (ENSABRG00000016510)	SUMO1 (ENSABRG00000016513)	NOP58 (ENSABRG00000016523)	BMPR2 (ENSABRG00000016558)	FAM117B (ENSABRG00000016605)	WDR12 (ENSABRG00000016630)	CARF (ENSABRG00000016665)
Duck	MODERN SPECIES	25	ENSAPLG00000024819	ENSAPLG00000024822	ENSAPLG00000027125	COL18A1 (ENSAPLG00000019001) #11	SLC19A1 (ENSAPLG00000003535) #12	ENSAPLG00000001882	COL6A2 (ENSAPLG00000001018) #15	ENSAPLG00000018473	ENSAPLG00000000885	MCM3AP (ENSAPLG00000015213) #19	POFUT2 (ENSAPLG00000015047) #10	ADARB1 (ENSAPLG00000015600) #9	SLX9 (ENSAPLG00000015590) #8	ITGB2 (ENSAPLG00000014857) #7	KMO (ENSAPLG00000014014)	PCNT (ENSAPLG00000013024) #22	DIP2A (ENSAPLG00000011466) #23	ENSAPLG00000019487	S100B (ENSAPLG00000021518) #24	LSS (ENSAPLG00000010494) #18	TMEM237 (ENSAPLG00000010261)	MPP4 (ENSAPLG00000009743)	ALS2 (ENSAPLG00000009216)	CDK15 (ENSAPLG00000009047)	SUMO1 (ENSAPLG00000025650)	NOP58 (ENSAPLG00000008524)	BMPR2 (ENSAPLG00000008092)	FAM117B (ENSAPLG00000007980)	WDR12 (ENSAPLG00000007646)	CARF (ENSAPLG00000007561)	PLEKHM3 (ENSAPLG00000007354)
Phasianidae	ANCESTRAL SPECIES	8											ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00940000164042.b.b.a	ENSGT00390000007989 #10	ENSGT00940000156322 #19	ENSGT01030000234722.a.a.b.b	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT00940000162889 #14	ENSGT00940000163601	ENSGT00940000162768.B	ENSGT00950000183022.b #12	ENSGT00940000158212.B #11	ENSGT00940000154486.b.b
Phasianidae_b	ANCESTRAL SPECIES	8											ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00940000164042.b.b.a	ENSGT00390000007989 #10	ENSGT00940000156322 #19	ENSGT01030000234722.a.a.b.b	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT00940000162889 #14	ENSGT00940000163601	ENSGT00940000162768.B	ENSGT00950000183022.b #12	ENSGT00940000158212.B #11	ENSGT00940000154486.b.b
Chicken	MODERN SPECIES	36	DNAH7 (ENSGALG00010010884)	SLC39A10 (ENSGALG00010010868)	TMEFF2 (ENSGALG00010010823)	CAVIN2 (ENSGALG00010010796)	NABP1 (ENSGALG00010010786)	ENSGALG00010015242	MYO1B (ENSGALG00010014080)	STAT4 (ENSGALG00010014000)	STAT1 (ENSGALG00010013934)	GLS2 (ENSGALG00010013872)	ADARB1 (ENSGALG00010013527) #9	ENSGALG00010014994 #8	ITGB2 (ENSGALG00010014976) #7	KMO (ENSGALG00010014963)	C7H21orf58 (ENSGALG00010014952) #21	PCNT (ENSGALG00010014876) #22	ENSGALG00010010847	DIP2A (ENSGALG00010010836) #23	S100B (ENSGALG00010013461) #24	LSS (ENSGALG00010013452) #18	ENSGALG00010010628	POFUT2 (ENSGALG00010010689) #10	MCM3AP (ENSGALG00010010646) #19	ENSGALG00010013951	BlSK1 (ENSGALG00010014799)	FTCD (ENSGALG00010014540) #16	COL6A2 (ENSGALG00010014389) #15	COL6A1 (ENSGALG00010014310) #14	ENSGALG00010014258	SLC19A1 (ENSGALG00010014180) #12	COL18A1 (ENSGALG00010014162) #11
Turkey	MODERN SPECIES	27												ADARB1 (ENSMGAG00000000971) #9	SLX9 (ENSMGAG00000001046) #8	ITGB2 (ENSMGAG00000001073) #7	ENSMGAG00000001355	PCNT (ENSMGAG00000021362) #22	ENSMGAG00000001433 #23	S100B (ENSMGAG00000001541) #24	ENSMGAG00000001544 #18	ENSMGAG00000001575	ENSMGAG00000001606 #10	MCM3AP (ENSMGAG00000001640) #19	ENSMGAG00000016124	FTCD (ENSMGAG00000001679) #16	COL6A2 (ENSMGAG00000001719) #15	ENSMGAG00000001789	ENSMGAG00000001883	SLC19A1 (ENSMGAG00000001945) #12	ENSMGAG00000002118	ENSMGAG00000002128	NDUFA10 (ENSMGAG00000002122)
Japanese quail	MODERN SPECIES	25	ENSCJPG00005008563	ENSCJPG00005008588	TMEFF2 (ENSCJPG00005008593)	CAVIN2 (ENSCJPG00005008594)	NABP1 (ENSCJPG00005008595)	ENSCJPG00005008596	MYO1B (ENSCJPG00005008597)	STAT4 (ENSCJPG00005008601)	STAT1 (ENSCJPG00005009401)	GLS (ENSCJPG00005009421)	ADARB1 (ENSCJPG00005010914) #9	ENSCJPG00005010916 #8	ITGB2 (ENSCJPG00005010917) #7	KMO (ENSCJPG00005011818)	C21orf58 (ENSCJPG00005011846) #21	PCNT (ENSCJPG00005011847) #22	DIP2A (ENSCJPG00005011865) #23	S100B (ENSCJPG00005012494) #24	LSS (ENSCJPG00005012495) #18	ENSCJPG00005012497	POFUT2 (ENSCJPG00005012498) #10	MCM3AP (ENSCJPG00005012505) #19	YBEY (ENSCJPG00005012777) #20	FTCD (ENSCJPG00005012778) #16	COL6A2 (ENSCJPG00005012779) #15	ENSCJPG00005012780	ENSCJPG00005012781	SLC19A1 (ENSCJPG00005012783) #12	COL18A1 (ENSCJPG00005012784) #11	ENSCJPG00005012785	ENSCJPG00005012786
African ostrich	MODERN SPECIES	504											ADARB1 (ENSSCUG00000005001) #9	ENSSCUG00000004998 #8	ITGB2 (ENSSCUG00000004995) #7	KMO (ENSSCUG00000004991)	C21orf58 (ENSSCUG00000004987) #21	PCNT (ENSSCUG00000004976) #22	DIP2A (ENSSCUG00000004970) #23	ENSSCUG00000004969	ENSSCUG00000004968
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005005949	COPS8 (ENSCPRG00005005990)	COL6A3 (ENSCPRG00005006067)	MLPH (ENSCPRG00005006256)	PRLH (ENSCPRG00005006285)	RAB17 (ENSCPRG00005006290)	LRRFIP1 (ENSCPRG00005006318)	ENSCPRG00005006347	MCM3AP (ENSCPRG00005006390) #19	YBEY (ENSCPRG00005006741) #20	POFUT2 (ENSCPRG00005006796) #10	ADARB1 (ENSCPRG00005007061) #9	SLX9 (ENSCPRG00005007076) #8	ITGB2 (ENSCPRG00005007177) #7	KMO (ENSCPRG00005007817)	PCNT (ENSCPRG00005007860) #22	DIP2A (ENSCPRG00005008003) #23	ENSCPRG00005008040	ENSCPRG00005008054	S100B (ENSCPRG00005008057) #24	LSS (ENSCPRG00005008065) #18	FTCD (ENSCPRG00005008102) #16	COL6A2 (ENSCPRG00005008124) #15	ENSCPRG00005008137	ENSCPRG00005008155	ENSCPRG00005008195	SLC19A1 (ENSCPRG00005008254) #12	ENSCPRG00005008263 #11	STRADB (ENSCPRG00005008312)	TRAK2 (ENSCPRG00005008325)	CASP8 (ENSCPRG00005008344)
Cryptodira	ANCESTRAL SPECIES	82								ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263521.b	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT00940000162889 #14	ENSGT01030000235116	ENSGT00940000163601	ENSGT00950000183546	ENSGT00940000162768.B
Testudinoidea	ANCESTRAL SPECIES	57						ENSGT00390000014309	ENSGT00390000004367	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a.m	ENSGT01100000263521.b	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT01030000235116	ENSGT00940000163601	ENSGT00950000183546	ENSGT00940000162768.B	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12
Emydidae	ANCESTRAL SPECIES	107							ENSGT00390000004367	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263521.b	ENSGT01100000263556.a.a.m	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005581.a #16
painted turtle	MODERN SPECIES	978													ITGB2 (ENSCPBG00000001342) #7	KMO (ENSCPBG00000001371)	ENSCPBG00000001380 #21	PCNT (ENSCPBG00000001402) #22	DIP2A (ENSCPBG00000001499) #23	ENSCPBG00000001526	ENSCPBG00000001535	S100B (ENSCPBG00000001544) #24	FTCD (ENSCPBG00000001566) #16
Three-toed box turtle	MODERN SPECIES	176							ENSTMTG00000013431	MCM3AP (ENSTMTG00000013346) #19	YBEY (ENSTMTG00000013320) #20	POFUT2 (ENSTMTG00000013038) #10	ADARB1 (ENSTMTG00000012997) #9	SLX9 (ENSTMTG00000012983) #8	ITGB2 (ENSTMTG00000010872) #7	KMO (ENSTMTG00000010700)	ENSTMTG00000010677 #21	PCNT (ENSTMTG00000010421) #22	DIP2A (ENSTMTG00000010338) #23	ENSTMTG00000010326	S100B (ENSTMTG00000010309) #24	LSS (ENSTMTG00000009259) #18	FTCD (ENSTMTG00000009148) #16
Testudinidae	ANCESTRAL SPECIES	76							ENSGT00390000014309	ENSGT00390000004367	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT01100000263556.a.a.m	ENSGT00940000154411.`b.h.a	ENSGT00940000161997.a #24	ENSGT00390000011570 #18	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT01030000235116	ENSGT00940000163601	ENSGT00950000183546	ENSGT00940000162768.B	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12
Abingdon island giant tortoise	MODERN SPECIES	1276													SLX9 (ENSCABG00000018581) #8	ITGB2 (ENSCABG00000018580) #7	KMO (ENSCABG00000018578)	PCNT (ENSCABG00000018572) #22	DIP2A (ENSCABG00000015210) #23	ENSCABG00000015084	ENSCABG00000015082	ENSCABG00000015079	S100B (ENSCABG00000015077) #24	ENSCABG00000015073 #18	FTCD (ENSCABG00000015067) #16	ENSCABG00000015058 #18
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005011848	ENSGEVG00005011826	ENSGEVG00005011780	ENSGEVG00005011747	ENSGEVG00005011620	ENSGEVG00005011505	ENSGEVG00005011461	MCM3AP (ENSGEVG00005011367) #19	YBEY (ENSGEVG00005011338) #20	POFUT2 (ENSGEVG00005011081) #10	ADARB1 (ENSGEVG00005011015) #9	ENSGEVG00005010964	SLX9 (ENSGEVG00005010943) #8	ITGB2 (ENSGEVG00005010898) #7	KMO (ENSGEVG00005010609)	PCNT (ENSGEVG00005009792) #22	DIP2A (ENSGEVG00005009109) #23	ENSGEVG00005008968	ENSGEVG00005008935	ENSGEVG00005008908	S100B (ENSGEVG00005008882) #24	ENSGEVG00005008427 #18	FTCD (ENSGEVG00005008182) #16	ENSGEVG00005007922 #18	COL6A2 (ENSGEVG00005007809) #15	ENSGEVG00005007782	ENSGEVG00005007725	ENSGEVG00005007665	ENSGEVG00005007621 #11	SLC19A1 (ENSGEVG00005007576) #12	ENSGEVG00005007320
Chinese turtle	MODERN SPECIES	312	PMS1 (ENSPSIG00000013731)	ORMDL1 (ENSPSIG00000014497)	OSGEPL1 (ENSPSIG00000014541)	ANKAR (ENSPSIG00000014767)	ASNSD1 (ENSPSIG00000015372)	SLC40A1 (ENSPSIG00000015492)	WDR75 (ENSPSIG00000015923)	MCM3AP (ENSPSIG00000017417) #19	YBEY (ENSPSIG00000005816) #20	POFUT2 (ENSPSIG00000005856) #10	ADARB1 (ENSPSIG00000006201) #9	SLX9 (ENSPSIG00000007857) #8	ITGB2 (ENSPSIG00000007865) #7	KMO (ENSPSIG00000009281)	ENSPSIG00000009478	ENSPSIG00000009495 #22	DIP2A (ENSPSIG00000009615) #23	ENSPSIG00000000672	S100B (ENSPSIG00000010916) #24	LSS (ENSPSIG00000010939) #18
Lepidosauria	ANCESTRAL SPECIES	111		ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570.t #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000158925	ENSGT00950000183202.b	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183115.b.a	ENSGT00390000012063	ENSGT00390000003338	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00390000011864	ENSGT00940000159528
Episquamata	ANCESTRAL SPECIES		ENSGT00940000161839	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570.t #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155311.B	ENSGT00940000158925	ENSGT00950000183202.b	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183115.b.a	ENSGT00390000003338	ENSGT00390000012063	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00860000133881	ENSGT00940000158114	ENSGT00940000157536.b	ENSGT00940000161407	ENSGT00940000157678	ENSGT01030000236477
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000161839	ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000181461	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570.t #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155311.B	ENSGT00940000158925	ENSGT00950000183202.b	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183115.b.a	ENSGT00390000003338	ENSGT00390000012063	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00860000133881	ENSGT00940000158114	ENSGT00940000157536.b	ENSGT00940000161407	ENSGT00940000157678	ENSGT00940000157234
Common wall lizard	MODERN SPECIES		RAB17 (ENSPMRG00000002014)	ENSPMRG00000002029	ENSPMRG00000002049	ENSPMRG00000002055	COL6A2 (ENSPMRG00000002061) #15	FTCD (ENSPMRG00000002078) #16	SPATC1L (ENSPMRG00000002088) #17	LSS (ENSPMRG00000002104) #18	MCM3AP (ENSPMRG00000002152) #19	YBEY (ENSPMRG00000002313) #20	POFUT2 (ENSPMRG00000002339) #10	ADARB1 (ENSPMRG00000002397) #9	SLX9 (ENSPMRG00000002410) #8	ITGB2 (ENSPMRG00000002418) #7	KMO (ENSPMRG00000002431)	ENSPMRG00000002448 #22	ENSPMRG00000002461	RCBTB2 (ENSPMRG00000002466)	RB1 (ENSPMRG00000002469)	LPAR6 (ENSPMRG00000002480)	ENSPMRG00000002484	ITM2B (ENSPMRG00000002490)	NUDT15 (ENSPMRG00000002501)	MED4 (ENSPMRG00000002508)	SUCLA2 (ENSPMRG00000002516)	LIG4 (ENSPMRG00000002521)	ABHD13 (ENSPMRG00000002528)	TNFSF13B (ENSPMRG00000002536)	SH3BP4 (ENSPMRG00000002553)	ENSPMRG00000002562	ENSPMRG00000002571
Argentine black and white tegu	MODERN SPECIES	12	RAB17 (ENSSMRG00000020971)	ENSSMRG00000020972	ENSSMRG00000020973	ENSSMRG00000020974	COL6A2 (ENSSMRG00000020975) #15	FTCD (ENSSMRG00000020977) #16	SPATC1L (ENSSMRG00000020978) #17	LSS (ENSSMRG00000020979) #18	MCM3AP (ENSSMRG00000020980) #19	YBEY (ENSSMRG00000020981) #20	POFUT2 (ENSSMRG00000020982) #10	ADARB1 (ENSSMRG00000020983) #9	SLX9 (ENSSMRG00000020984) #8	ITGB2 (ENSSMRG00000020985) #7	KMO (ENSSMRG00000021047)	ENSSMRG00000021055 #22	ENSSMRG00000021064	RCBTB2 (ENSSMRG00000021065)	RB1 (ENSSMRG00000021067)	LPAR6 (ENSSMRG00000021069)	ITM2B (ENSSMRG00000021070)	NUDT15 (ENSSMRG00000021071)	MED4 (ENSSMRG00000021073)	SUCLA2 (ENSSMRG00000021075)	HTR2A (ENSSMRG00000021077)	LIG4 (ENSSMRG00000021078)	ABHD13 (ENSSMRG00000021080)	IRS2 (ENSSMRG00000021081)	COL4A1 (ENSSMRG00000021082)	COL4A2 (ENSSMRG00000021085)	RAB20 (ENSSMRG00000021086)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00520000055666.b #17	ENSGT00390000011570.t #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000000747	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155311.B	ENSGT00940000158925	ENSGT00950000183202.b	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183115.b.a	ENSGT00390000003338	ENSGT00390000012063	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00860000133881	ENSGT00940000158114	ENSGT00940000157536.b	ENSGT00940000161407	ENSGT00940000157678	ENSGT01030000236477
Elapidae	ANCESTRAL SPECIES		ENSGT00940000159715	ENSGT00390000011048	ENSGT01050000244891.C.c.b	ENSGT00940000155814	ENSGT00950000182865.b.a.b.b.b.a	ENSGT00940000158209	ENSGT00940000161024	ENSGT00940000157234	ENSGT01030000236477	ENSGT00940000157678	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a.a #7	ENSGT01090000259987.a.a.a.b #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155311.B	ENSGT00940000158925	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00950000183115.b.a	ENSGT00390000003338	ENSGT00390000012063	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00860000133881	ENSGT00940000158114	ENSGT00940000157536.b	ENSGT00940000161407	ENSGT00390000007989 #10	ENSGT00950000183170.b.b #20
Indian cobra	MODERN SPECIES		ITSN2 (ENSNNAG00000001911)	KCNRG (ENSNNAG00000007085)	TRIM13 (ENSNNAG00000007098)	SPRYD7 (ENSNNAG00000007124)	KPNA3 (ENSNNAG00000007146)	RCBTB1 (ENSNNAG00000007242)	PHF11 (ENSNNAG00000007272)	SETDB2 (ENSNNAG00000007293)	RAB20 (ENSNNAG00000007331)	ENSNNAG00000007365	COL4A1 (ENSNNAG00000007610)	ADARB1 (ENSNNAG00000007851) #9	ENSNNAG00000007923 #8	ITGB2 (ENSNNAG00000007977) #7	KMO (ENSNNAG00000008887)	ENSNNAG00000008922 #22	ENSNNAG00000009129	RCBTB2 (ENSNNAG00000009162)	RB1 (ENSNNAG00000009195)	LPAR6 (ENSNNAG00000009281)	ITM2B (ENSNNAG00000009301)	NUDT15 (ENSNNAG00000009329)	MED4 (ENSNNAG00000009342)	SUCLA2 (ENSNNAG00000009363)	HTR2A (ENSNNAG00000009399)	LIG4 (ENSNNAG00000009416)	ABHD13 (ENSNNAG00000009427)	TNFSF13B (ENSNNAG00000009437)	IRS2 (ENSNNAG00000009481)	POFUT2 (ENSNNAG00000009522) #10	YBEY (ENSNNAG00000009555) #20
Elapidae_a	ANCESTRAL SPECIES	39	ENSGT00940000159715	ENSGT00390000011048	ENSGT01050000244891.C.c.b	ENSGT00940000155814	ENSGT00950000182865.b.a.b.b.b.a	ENSGT00940000158209	ENSGT00940000161024	ENSGT00940000157234	ENSGT01030000236477	ENSGT00940000157678	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a.a #7	ENSGT01090000259987.a.a.a.b #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155311.B	ENSGT00940000158925	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00950000183115.b.a	ENSGT00390000003338	ENSGT00390000012063	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00860000133881	ENSGT00940000158114	ENSGT00940000157536.b	ENSGT00940000161407	ENSGT00390000007989 #10	ENSGT00950000183170.b.b #20
Acanthophiinae	ANCESTRAL SPECIES	39	ENSGT00940000159715	ENSGT00390000011048	ENSGT01050000244891.C.c.b	ENSGT00940000155814	ENSGT00950000182865.b.a.b.b.b.a	ENSGT00940000158209	ENSGT00940000161024	ENSGT00940000157234	ENSGT01030000236477	ENSGT00940000157678	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a.a #7	ENSGT01090000259987.a.a.a.b #7	ENSGT00390000000747	ENSGT00730000110871.a.a.a.b #22	ENSGT00960000192136	ENSGT00940000158925	ENSGT01040000240444.A.a.a.a.a	ENSGT00950000183202.b	ENSGT00950000183115.b.a	ENSGT00390000003338	ENSGT00390000012063	ENSGT00390000010170.a.b.x	ENSGT01050000244937.a.a	ENSGT00860000133881	ENSGT00940000158114	ENSGT00940000157536.b	ENSGT00940000161407	ENSGT00390000007989 #10	ENSGT00950000183170.b.b #20
Eastern brown snake	MODERN SPECIES	36	TRIM13 (ENSPTXG00000002211)	SPRYD7 (ENSPTXG00000002212)	KPNA3 (ENSPTXG00000002213)	RCBTB1 (ENSPTXG00000002216)	ENSPTXG00000002217	SETDB2 (ENSPTXG00000002219)	RAB20 (ENSPTXG00000002221)	COL4A2 (ENSPTXG00000002222)	ENSPTXG00000002224	COL4A1 (ENSPTXG00000002225)	ADARB1 (ENSPTXG00000002229) #9	ENSPTXG00000002230 #8	ENSPTXG00000002232 #7	ENSPTXG00000002234 #7	KMO (ENSPTXG00000002237)	ENSPTXG00000002462 #22	ENSPTXG00000002466	RCBTB2 (ENSPTXG00000002468)	RB1 (ENSPTXG00000002482)	LPAR6 (ENSPTXG00000002559)	ITM2B (ENSPTXG00000002561)	NUDT15 (ENSPTXG00000002564)	MED4 (ENSPTXG00000002567)	SUCLA2 (ENSPTXG00000002568)	HTR2A (ENSPTXG00000002570)	LIG4 (ENSPTXG00000002573)	ABHD13 (ENSPTXG00000002576)	TNFSF13B (ENSPTXG00000002577)	IRS2 (ENSPTXG00000002597)	ENSPTXG00000002645 #10	ENSPTXG00000002646 #10
Lizard	MODERN SPECIES	1251												ENSACAG00000009502 #7	ENSACAG00000009414	ENSACAG00000028291 #21	ENSACAG00000037729	ENSACAG00000009409 #22	ENSACAG00000024323
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1311													KMO (ENSSPUG00000015196)	ENSSPUG00000015287	ENSSPUG00000015290	ENSSPUG00000015311 #22	ENSSPUG00000015315 #22
tuatara	MODERN SPECIES	1311												KMO (ENSSPUG00000015196)	ENSSPUG00000015287	ENSSPUG00000015290	ENSSPUG00000015311 #22	ENSSPUG00000015315 #22
Anura	ANCESTRAL SPECIES	7	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682 #15	ENSGT00390000005581.a #16	ENSGT00390000011570 #18	ENSGT00940000156322 #19	ENSGT00950000183170.b.b #20	ENSGT00390000011514 #21	ENSGT00960000191699	ENSGT00730000110871.a.a.a.b #22	ENSGT00950000182997.a.b.b.a #23	ENSGT00940000160683 #25	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00530000063273.b.b	ENSGT00940000159677.c.a	ENSGT00940000159677.c.b.a.f	ENSGT00940000159677.c.b.a.e.a	ENSGT00390000013151.a.a	ENSGT00940000160639	ENSGT00390000009001	ENSGT00940000160270
Frog	MODERN SPECIES	9	nckap1 (ENSXETG00000001337)	dusp19 (ENSXETG00000001336)	nup35 (ENSXETG00000001335)	znf804a (ENSXETG00000039111)	col18a1 (ENSXETG00000011481) #11	slc19a1 (ENSXETG00000011482) #12	pcbp1 (ENSXETG00000011483)	col6a2 (ENSXETG00000011490) #15	ftcd (ENSXETG00000011494) #16	ENSXETG00000045954	ENSXETG00000035341	mcm3ap (ENSXETG00000011496) #19	ybey (ENSXETG00000035034) #20	tmem65 (ENSXETG00000011506) #21	ENSXETG00000043010	pcnt (ENSXETG00000033996) #22	lss (ENSXETG00000004899) #18	dip2a (ENSXETG00000030597) #23	prmt2 (ENSXETG00000031494) #25	ugt1a1 (ENSXETG00000030758)	ENSXETG00000036379	ndufa10 (ENSXETG00000004886)	ENSXETG00000044440	hdac4 (ENSXETG00000004880)	ENSXETG00000035899	asb1 (ENSXETG00000004879)	ag1 (ENSXETG00000004878)	ENSXETG00000044141	traf3ip1 (ENSXETG00000004877)	ENSXETG00000047014	ENSXETG00000042977
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000026550	ENSLLEG00000026502 #11	ENSLLEG00000026468	SLC19A1 (ENSLLEG00000026312) #12	ENSLLEG00000026251	ENSLLEG00000024478	COL6A2 (ENSLLEG00000023804) #15	PPIL1 (ENSLLEG00000023656)	ENSLLEG00000023607	FTCD (ENSLLEG00000023256) #16	LSS (ENSLLEG00000021758) #18	MCM3AP (ENSLLEG00000020937) #19	YBEY (ENSLLEG00000020697) #20	C21orf58 (ENSLLEG00000020591) #21	ENSLLEG00000020568	ENSLLEG00000019716 #22	DIP2A (ENSLLEG00000019176) #23	PRMT2 (ENSLLEG00000019029) #25	ENSLLEG00000018991	NDUFA10 (ENSLLEG00000016937)	HDAC4 (ENSLLEG00000016167)	ENSLLEG00000016118	ENSLLEG00000016097	ASB1 (ENSLLEG00000016008)	TRAF3IP1 (ENSLLEG00000015779)	ENSLLEG00000019265	ENSLLEG00000019208	ENSLLEG00000019128	ENSLLEG00000019102	ENSLLEG00000019051	ENSLLEG00000018963
Coelacanth	MODERN SPECIES	627			VWC2L (ENSLACG00000015603)	ENSLACG00000014837	ABCA12 (ENSLACG00000014253)	ENSLACG00000012612	FTCD (ENSLACG00000012351) #16	ENSLACG00000022203 #17	hnmt (ENSLACG00000012024)	C21orf58 (ENSLACG00000011823) #21	YBEY (ENSLACG00000011567) #20	MCM3AP (ENSLACG00000010838) #19	LSS (ENSLACG00000010380) #18	ENSLACG00000009797	ENSLACG00000008603	ENSLACG00000005882 #22
Actinopterygii	ANCESTRAL SPECIES	170		ENSGT00940000156882	ENSGT00390000015276	ENSGT00940000153239.A	ENSGT00940000158179	ENSGT00940000157608	ENSGT00940000164537	ENSGT00390000010672	ENSGT00390000006618	ENSGT00940000157516	ENSGT00940000162528	ENSGT00940000154913	ENSGT00950000183009	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000164909	ENSGT00390000004977	ENSGT00950000182895.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00940000154360.A.b	ENSGT00940000162768.B	ENSGT00950000183022.b #12	ENSGT00940000158212.B #11	ENSGT00940000167200
Neopterygii	ANCESTRAL SPECIES	61	ENSGT00390000016988.a.a.a.b	ENSGT00940000156882	ENSGT00390000015276	ENSGT00940000153239.A	ENSGT00940000158179	ENSGT00940000157608	ENSGT00940000164537	ENSGT00390000010672	ENSGT00390000006618	ENSGT00940000157516	ENSGT00940000162528	ENSGT00940000154913	ENSGT00950000183009	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000161051.a.a.a.a.a	ENSGT00940000161051.a.a.a.a.b	ENSGT00390000014839.b	ENSGT00390000005911	ENSGT00950000182942.a.b	ENSGT00940000164909	ENSGT00390000004977	ENSGT00950000182895.a.b	ENSGT00940000158193	ENSGT00510000047718	ENSGT00950000183165.a	ENSGT00950000183165.b.a.e.b	ENSGT00940000160220	ENSGT00940000154095.b.b.a.b	ENSGT00550000075037
Osteoglossocephalai	ANCESTRAL SPECIES	525													ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22
Clupeocephala	ANCESTRAL SPECIES	433													ENSGT00950000183009.db.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v
Otomorpha	ANCESTRAL SPECIES	155	ENSGT00940000156702.a.b.b	ENSGT00940000158212.B #11	ENSGT00950000183022.b #12	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22
Otophysi	ANCESTRAL SPECIES	44	ENSGT00940000155773.a	ENSGT00940000155655.A	ENSGT00940000157230.b	ENSGT00940000155359.w.b	ENSGT00530000063836.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e	ENSGT00950000182919.C	ENSGT00390000001859.f	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d
Characiphysae	ANCESTRAL SPECIES	18	ENSGT00390000014376.c.b	ENSGT00940000155773.a	ENSGT00940000155655.A	ENSGT00940000157230.b	ENSGT00940000155359.w.b.bb	ENSGT00530000063836.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e	ENSGT00950000182919.C	ENSGT00390000001859.f	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d
Characiphysae_b	ANCESTRAL SPECIES	127	ENSGT00940000155773.a	ENSGT00940000155655.A	ENSGT00940000157230.b	ENSGT00940000155359.w.b.cb	ENSGT00940000155359.w.b.bb	ENSGT00530000063836.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e	ENSGT00950000182919.C	ENSGT00390000001859.f	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d
Characoidei	ANCESTRAL SPECIES	124	ENSGT00390000014376.c.b	ENSGT00940000155773.a.a	ENSGT00940000155655.A	ENSGT00940000157230.b	ENSGT00940000155359.w.b.bb	ENSGT00530000063836.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e	ENSGT00950000182919.C	ENSGT00390000001859.f	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00940000155557.kc
Red-bellied piranha	MODERN SPECIES	93			PCDH9 (ENSPNAG00000014181)	pou4f1 (ENSPNAG00000014164)	ENSPNAG00000003032	RBM26 (ENSPNAG00000003024)	NBEAL1 (ENSPNAG00000013975)	ENSPNAG00000002928	TRAK2 (ENSPNAG00000013732)	ENSPNAG00000013725	SEMA5B (ENSPNAG00000002901)	unc50 (ENSPNAG00000002873)	slc25a12 (ENSPNAG00000002858)	ENSPNAG00000002847	zgc:112416 (ENSPNAG00000013594) #21	pcnt (ENSPNAG00000002811) #22	atg9a (ENSPNAG00000002672)	ENSPNAG00000013229	ENSPNAG00000013064	sumo3b (ENSPNAG00000013056)	ENSPNAG00000013036	coq7 (ENSPNAG00000002452)	notum2 (ENSPNAG00000005408)	ccr7 (ENSPNAG00000002437)	cycsb (ENSPNAG00000012874)	nfe2l2b (ENSPNAG00000002430)	mtx2 (ENSPNAG00000012847)	lnpk (ENSPNAG00000012789)	atp5mc3b (ENSPNAG00000002387)	chrna1 (ENSPNAG00000002374)	ENSPNAG00000012709
Mexicana tetra	MODERN SPECIES	4	ENSAMXG00000032598	ENSAMXG00000004571	wdsub1 (ENSAMXG00000004598)	BAZ2B (ENSAMXG00000004622)	marchf7 (ENSAMXG00000004681)	FAM171B (ENSAMXG00000030999)	ENSAMXG00000038684	ENSAMXG00000038193	GULP1 (ENSAMXG00000029207)	ENSAMXG00000033238	ENSAMXG00000030175	ENSAMXG00000030733	ENSAMXG00000035992	zgc:112416 (ENSAMXG00000004815) #21	ENSAMXG00000029897	pcnt (ENSAMXG00000004816) #22	atg9a (ENSAMXG00000004817)	ENSAMXG00000004819	ENSAMXG00000034610	ENSAMXG00000043954	ENSAMXG00000032733	ENSAMXG00000039857	ENSAMXG00000034312	ENSAMXG00000038919	ENSAMXG00000038964	ENSAMXG00000033900	ENSAMXG00000043431	ENSAMXG00000032422	SEC14L1 (ENSAMXG00000015965)	ENDOV (ENSAMXG00000015972)	NPTX1 (ENSAMXG00000043623)
Channel catfish	MODERN SPECIES	3	BAZ2B (ENSIPUG00000017681)	wdsub1 (ENSIPUG00000017850)	ENSIPUG00000017871	ENSIPUG00000017957	march7 (ENSIPUG00000018025)	fam171b (ENSIPUG00000018056)	zswim2 (ENSIPUG00000018064)	calcrl (ENSIPUG00000018077)	nmnat1 (ENSIPUG00000018100)	gulp1b (ENSIPUG00000018114)	ENSIPUG00000018185	ENSIPUG00000018196	ENSIPUG00000018199	ENSIPUG00000018211	zgc:112416 (ENSIPUG00000018260) #21	pcnt (ENSIPUG00000018294) #22	atg9a (ENSIPUG00000018387)	ENSIPUG00000018445	pttg1ipa (ENSIPUG00000018580)	SUMO3 (ENSIPUG00000018584)	ENSIPUG00000018615	COQ7 (ENSIPUG00000018837)	notum2 (ENSIPUG00000018885)	CCR7 (ENSIPUG00000018909)	CYC (ENSIPUG00000018915)	mtx2 (ENSIPUG00000018936)	lnpk (ENSIPUG00000018992)	AT5G3 (ENSIPUG00000019033)	chrna1 (ENSIPUG00000019058)	WIPF1 (ENSIPUG00000019090)	GPR155 (ENSIPUG00000019106)
Cyprinoidei	ANCESTRAL SPECIES	51	ENSGT00390000014376.c.b	ENSGT00940000155773.a	ENSGT00940000155655.A	ENSGT00940000157230.b	ENSGT00940000155359.w.b	ENSGT00530000063836.a	ENSGT00950000183184.a.a.b	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000156186.l.a	ENSGT00940000168325	ENSGT00950000183140.a.a	ENSGT00940000155489.a	ENSGT00390000011514 #21	ENSGT00940000174917	ENSGT00730000110871.a.a.a.b #22	ENSGT00390000014839.b.h
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00980000202863.a	ENSGT00390000014376.c.b.b	ENSGT00940000155773.a.c	ENSGT00940000155655.A.h	ENSGT00940000157230.b.e	ENSGT00940000155359.w.b.eb	ENSGT00530000063836.a.o	ENSGT00950000183184.a.a.b.b	ENSGT00390000006826	ENSGT00940000159898.i	ENSGT00940000156186.l.a.a.b	ENSGT00940000168325.a	ENSGT00950000183140.a.a.b	ENSGT00940000155489.a.b	ENSGT00940000174917	ENSGT00730000110871.a.a.a.b.e #22	ENSGT00390000014839.b.g	ENSGT00940000164909.e.b.a	ENSGT00940000168354.d.b	ENSGT00940000165591.a.a	ENSGT00390000014520.n.b	ENSGT00940000165776.h	ENSGT01030000234667.a.a.a.a.b.d	ENSGT00940000157883.a.b.f.c.a	ENSGT00950000182892.a.a.b.e.a	ENSGT00950000182919.C.m	ENSGT00390000001859.f.b.b.b	ENSGT00940000157981.a.a.a.c.b	ENSGT00940000156851.d.c.b	ENSGT00910000144296.d	ENSGT00390000004153.d.i
Goldfish	MODERN SPECIES	24	gpd2 (ENSCARG00000023414)	ENSCARG00000023589	si:dkey-276j7.1 (ENSCARG00000023596)	ENSCARG00000023732	ENSCARG00000026825	wdsub1 (ENSCARG00000029251)	ENSCARG00000029455	MARCHF7 (ENSCARG00000035270)	FAM171B (ENSCARG00000035290)	zswim2 (ENSCARG00000035294)	CALCRL (ENSCARG00000035311)	GULP1 (ENSCARG00000035354)	ENSCARG00000035363	ENSCARG00000005837	ENSCARG00000005853	pcnt (ENSCARG00000005921) #22	atg9a (ENSCARG00000006247)	ENSCARG00000006674	pttg1ipa (ENSCARG00000011323)	ENSCARG00000011330	ENSCARG00000011374	coq7 (ENSCARG00000011627)	ccr7 (ENSCARG00000011694)	cycsb (ENSCARG00000011705)	nfe2l2b (ENSCARG00000011714)	mtx2 (ENSCARG00000011733)	lnpk (ENSCARG00000011769)	atp5mc3b (ENSCARG00000011794)	chrna1 (ENSCARG00000011844)	ENSCARG00000012343	ENSCARG00000012348
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00980000202863.a	ENSGT00390000014376.c.b.b	ENSGT00940000155773.a.c	ENSGT00940000155655.A.h	ENSGT00940000157230.b.e	ENSGT00940000155359.w.b.eb	ENSGT00530000063836.a.o	ENSGT00950000183184.a.a.b.b	ENSGT00390000006826.a	ENSGT00940000159898.i	ENSGT00940000156186.l.a.a.b	ENSGT00940000168325.a	ENSGT00950000183140.a.a.b	ENSGT00940000155489.a.b	ENSGT00940000174917	ENSGT00730000110871.a.a.a.b.e #22	ENSGT00390000014839.b.g	ENSGT00940000164909.e.b.a	ENSGT00940000168354.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a.a	ENSGT00390000014520.n.b	ENSGT00940000165776.h	ENSGT01030000234667.a.a.a.a.b.d	ENSGT00940000157883.a.b.f.c.a	ENSGT00950000182892.a.a.b.e.a	ENSGT00950000182919.C.m	ENSGT00390000001859.f.b.a	ENSGT00940000157981.a.a.a.c.b	ENSGT00940000156851.d.c.b	ENSGT00910000144296.d
Common carp reference	MODERN SPECIES	16	ENSCCRG00000060862	si:dkey-276j7.1 (ENSCCRG00000025745)	ENSCCRG00000025758	ENSCCRG00000045512	wdsub1 (ENSCCRG00000025177)	ENSCCRG00000026304	MARCHF7 (ENSCCRG00000022917)	FAM171B (ENSCCRG00000022922)	zswim2 (ENSCCRG00000022927)	CALCRL (ENSCCRG00000005532)	GULP1 (ENSCCRG00000027127)	ENSCCRG00000076943	ENSCCRG00000008347	ENSCCRG00000016466	ENSCCRG00000000184	pcnt (ENSCCRG00000000384) #22	atg9a (ENSCCRG00000000503)	ENSCCRG00000040506	pttg1ipa (ENSCCRG00000013616)	ENSCCRG00000013601	ENSCCRG00000057193	coq7 (ENSCCRG00000071693)	notum2 (ENSCCRG00000002035)	ccr7 (ENSCCRG00000002028)	cycsb (ENSCCRG00000060152)	nfe2l2b (ENSCCRG00000002018)	mtx2 (ENSCCRG00000062543)	ENSCCRG00000067586	lnpk (ENSCCRG00000051273)	chrna1 (ENSCCRG00000080784)	ENSCCRG00000064998
Golden-line barbel	MODERN SPECIES	62	stk24b (ENSSGRG00000025642)	nr4a2b (ENSSGRG00000025677)	gpd2 (ENSSGRG00000025685)	ENSSGRG00000025891	ENSSGRG00000025896	ENSSGRG00000025918	wdsub1 (ENSSGRG00000026505)	ENSSGRG00000026512	MARCHF7 (ENSSGRG00000026608)	FAM171B (ENSSGRG00000026611)	zswim2 (ENSSGRG00000026614)	CALCRL (ENSSGRG00000026622)	ENSSGRG00000027498	ENSSGRG00000027499	ENSSGRG00000027502	pcnt (ENSSGRG00000027504) #22	ATG9A (ENSSGRG00000027509)	ENSSGRG00000027515	pttg1ipa (ENSSGRG00000027520)	ENSSGRG00000027521	ENSSGRG00000027600	coq7 (ENSSGRG00000028458)	notum2 (ENSSGRG00000028459)	ccr7 (ENSSGRG00000028460)	cycsb (ENSSGRG00000028463)	nfe2l2b (ENSSGRG00000028481)	mtx2 (ENSSGRG00000028486)	ENSSGRG00000028581	atp5mc3b (ENSSGRG00000028582)	chrna1 (ENSSGRG00000028593)	GPR155 (ENSSGRG00000028597)
Cyprininae	ANCESTRAL SPECIES	23	ENSGT00390000001718.b.c	ENSGT00980000202863.b	ENSGT00390000014376.c.b.a	ENSGT00940000155773.a.d	ENSGT00940000155655.A.g	ENSGT00940000157230.b.f	ENSGT00940000155359.w.b.db	ENSGT00530000063836.a.p	ENSGT00950000183184.a.a.b.a	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a.a.a	ENSGT00940000168325.b	ENSGT00950000183140.a.a.a	ENSGT00940000155489.a.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b.f #22	ENSGT00390000014839.b.h	ENSGT00940000164909.e.b.b	ENSGT00940000168354.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a.b	ENSGT00390000014520.n.a	ENSGT00940000165776.g	ENSGT01030000234667.a.a.a.a.b.c	ENSGT00940000157883.a.b.f.c.b	ENSGT00950000182892.a.a.b.e.b	ENSGT00950000182919.C.n	ENSGT00390000001859.f.b.b.a	ENSGT00940000157981.a.a.a.c.a	ENSGT00940000156851.d.c.a	ENSGT00940000155557.kc
Goldfish	MODERN SPECIES	46	gpd2 (ENSCARG00000025582)	ENSCARG00000025556	si:dkey-276j7.1 (ENSCARG00000025541)	ENSCARG00000024557	ENSCARG00000021653	wdsub1 (ENSCARG00000021539)	ENSCARG00000017322	FAM171B (ENSCARG00000017096)	ENSCARG00000015756	GULP1 (ENSCARG00000015713)	ENSCARG00000015670	ENSCARG00000015690	ENSCARG00000015660	ENSCARG00000015646	zgc:112416 (ENSCARG00000015634) #21	pcnt (ENSCARG00000015475) #22	ATG9A (ENSCARG00000015429)	ENSCARG00000014750	pttg1ipa (ENSCARG00000014714)	ENSCARG00000014705	ENSCARG00000014633	coq7 (ENSCARG00000014608)	notum2 (ENSCARG00000014585)	ccr7 (ENSCARG00000014577)	cycsb (ENSCARG00000014575)	nfe2l2b (ENSCARG00000014572)	mtx2 (ENSCARG00000014514)	lnpk (ENSCARG00000014454)	atp5mc3b (ENSCARG00000014409)	chrna1 (ENSCARG00000013628)	ENSCARG00000013590
Cyprininae_a	ANCESTRAL SPECIES	30	ENSGT00390000001718.b.c	ENSGT00980000202863.b	ENSGT00390000014376.c.b.a	ENSGT00940000155773.a.d	ENSGT00940000155655.A.g	ENSGT00940000157230.b.f	ENSGT00940000155359.w.b.db	ENSGT00530000063836.a.p	ENSGT00950000183184.a.a.b.a	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a.a.a	ENSGT00940000168325.b	ENSGT00950000183140.a.a.a	ENSGT00940000155489.a.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b.f #22	ENSGT00390000014839.b.h	ENSGT00940000164909.e.b.b	ENSGT00940000168354.d.a	ENSGT00940000165591.a.b	ENSGT00390000014520.n.a	ENSGT00940000165776.g	ENSGT01030000234667.a.a.a.a.b.c	ENSGT00940000157883.a.b.f.c.b	ENSGT00950000182892.a.a.b.e.b	ENSGT00950000182919.C.n	ENSGT00390000001859.f.b.b.a	ENSGT00940000157981.a.a.a.c.a	ENSGT00940000156851.d.c.a	ENSGT00940000155557.kc	ENSGT00390000004153.d.j
Common carp reference	MODERN SPECIES	10	gpd2 (ENSCCRG00000073527)	ENSCCRG00000030414	si:dkey-276j7.1 (ENSCCRG00000030409)	ENSCCRG00000030398	ENSCCRG00000017075	wdsub1 (ENSCCRG00000030234)	ENSCCRG00000064084	MARCHF7 (ENSCCRG00000045932)	ENSCCRG00000026256	ENSCCRG00000027886	ENSCCRG00000023287	ENSCCRG00000055344	ENSCCRG00000016478	ENSCCRG00000000163	zgc:112416 (ENSCCRG00000016454) #21	pcnt (ENSCCRG00000015629) #22	ENSCCRG00000040433	ENSCCRG00000000883	pttg1ipa (ENSCCRG00000071392)	ENSCCRG00000035140	coq7 (ENSCCRG00000070280)	notum2 (ENSCCRG00000002071)	ccr7 (ENSCCRG00000075598)	ENSCCRG00000068634	cycsb (ENSCCRG00000069700)	nfe2l2b (ENSCCRG00000061753)	mtx2 (ENSCCRG00000001882)	lnpk (ENSCCRG00000002052)	atp5mc3b (ENSCCRG00000051371)	chrna1 (ENSCCRG00000051031)	ENSCCRG00000066489
Golden-line barbel	MODERN SPECIES	533	ENSSGRG00000007789	nr0b2a (ENSSGRG00000007788)	si:dkey-276j7.1 (ENSSGRG00000007783)	ENSSGRG00000007443	ENSSGRG00000006339	wdsub1 (ENSSGRG00000006284)	ENSSGRG00000000984	MARCHF7 (ENSSGRG00000000948)	FAM171B (ENSSGRG00000000947)	zswim2 (ENSSGRG00000000946)	CALCRL (ENSSGRG00000000668)	GULP1 (ENSSGRG00000000653)	ENSSGRG00000000640	ENSSGRG00000000638	zgc:112416 (ENSSGRG00000000637) #21	pcnt (ENSSGRG00000000628) #22	ATG9A (ENSSGRG00000000625)
Zebrafish	MODERN SPECIES	21	ENSDARG00000045331	ENSDARG00000077073	wdsub1 (ENSDARG00000090418)	BAZ2B (ENSDARG00000057782)	marchf7 (ENSDARG00000057772)	FAM171B (ENSDARG00000096271)	ENSDARG00000096375	zswim2 (ENSDARG00000075700)	ENSDARG00000096384	CALCRL (ENSDARG00000011571)	GULP1 (ENSDARG00000057833)	ENSDARG00000024847	ENSDARG00000079945	ENSDARG00000073837	zgc:112416 (ENSDARG00000044549) #21	pcnt (ENSDARG00000033012) #22	atg9a (ENSDARG00000044551)	ENSDARG00000074723	pttg1ipa (ENSDARG00000090156)	sumo3a (ENSDARG00000028119)	ENSDARG00000016750	coq7 (ENSDARG00000062594)	notum2 (ENSDARG00000088411)	ccr7 (ENSDARG00000044561)	cycsb (ENSDARG00000044562)	ENSDARG00000096239	nfe2l2b (ENSDARG00000089697)	mtx2 (ENSDARG00000029415)	lnpk (ENSDARG00000006639)	atp5mc3b (ENSDARG00000009447)	chrna1 (ENSDARG00000009021)
Euteleosteomorpha	ANCESTRAL SPECIES	421															ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a
Acanthomorphata	ANCESTRAL SPECIES	63	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Ovalentaria_B	ANCESTRAL SPECIES	18	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Pomacentridae	ANCESTRAL SPECIES	19	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Pomacentridae_A	ANCESTRAL SPECIES	19	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b.a	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Amphiprion	ANCESTRAL SPECIES	12	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b.a	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Clown anemonefish	MODERN SPECIES	1261									ENSAOCG00000018160	TSPEAR (ENSAOCG00000018213)	ENSAOCG00000018240	ENSAOCG00000018250	ENSAOCG00000018382	atg9a (ENSAOCG00000018502)	zgc:112416 (ENSAOCG00000018529) #21	pcnt (ENSAOCG00000019038) #22	ENSAOCG00000019095	TRA2B (ENSAOCG00000019109)	ENSAOCG00000019135	ENSAOCG00000002461	uggt1 (ENSAOCG00000019275)	hs6st1b (ENSAOCG00000019302)
Orange clownfish	MODERN SPECIES	9	fut9a (ENSAPEG00000015587)	fhl5 (ENSAPEG00000015239)	ENSAPEG00000015150	col10a1a (ENSAPEG00000015130)	marcksb (ENSAPEG00000015095)	fyna (ENSAPEG00000015022)	ENSAPEG00000014978	fabp7a (ENSAPEG00000014966)	ENSAPEG00000014934	TSPEAR (ENSAPEG00000014885)	sumo3a (ENSAPEG00000014857)	ENSAPEG00000014846	ENSAPEG00000014709	atg9a (ENSAPEG00000014643)	ENSAPEG00000014637	ENSAPEG00000014411 #22	ENSAPEG00000014362	TRA2B (ENSAPEG00000014341)	ola1 (ENSAPEG00000014283)	ENSAPEG00000014249	uggt1 (ENSAPEG00000014074)	hs6st1b (ENSAPEG00000014035)	otomp (ENSAPEG00000013993)	acvr1l (ENSAPEG00000013964)	d2hgdh (ENSAPEG00000013915)	ENSAPEG00000013891	ENSAPEG00000013844	SSBP4 (ENSAPEG00000013777)	keap1a (ENSAPEG00000013761)	crlf1a (ENSAPEG00000013716)	odf3l2a (ENSAPEG00000013678)
Spiny chromis	MODERN SPECIES	434	fhl5 (ENSAPOG00000003721)	ENSAPOG00000003711	col10a1a (ENSAPOG00000003702)	marcksb (ENSAPOG00000003694)	fyna (ENSAPOG00000003674)	ENSAPOG00000003620	ENSAPOG00000003598	fabp7a (ENSAPOG00000003576)	ENSAPOG00000003564	TSPEAR (ENSAPOG00000003556)	sumo3b (ENSAPOG00000003545)	ENSAPOG00000003531	ENSAPOG00000003499	atg9a (ENSAPOG00000003356)	zgc:112416 (ENSAPOG00000003258) #21	pcnt (ENSAPOG00000000769) #22	ENSAPOG00000023764	TRA2B (ENSAPOG00000023727)	ola1 (ENSAPOG00000023705)	ENSAPOG00000023649
Bicolor damselfish	MODERN SPECIES	319	fhl5 (ENSSPAG00000020146)	ENSSPAG00000020155	col10a1a (ENSSPAG00000020169)	marcksb (ENSSPAG00000020181)	fyna (ENSSPAG00000020207)	ENSSPAG00000020243	fabp7a (ENSSPAG00000020252)	ENSSPAG00000020265	TSPEAR (ENSSPAG00000020305)	sumo3a (ENSSPAG00000020380)	ENSSPAG00000020659	ENSSPAG00000020682	ENSSPAG00000020738	atg9a (ENSSPAG00000020756)	ENSSPAG00000020796	pcnt (ENSSPAG00000020840) #22	ENSSPAG00000021114	TRA2B (ENSSPAG00000021124)	ola1 (ENSSPAG00000021138)	ENSSPAG00000021178	uggt1 (ENSSPAG00000021207)	hs6st1b (ENSSPAG00000021350)
Cichlidae	ANCESTRAL SPECIES	22	ENSGT00940000155095.i.a.h	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000155095.i.a.h	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT01100000264078.a.a	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000155095.i.a.h	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT01100000264078.a.a	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000158431.a.a.a.a.a.b.b.c.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000158431.a.a.a.a.a.b.b.c.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000158431.a.a.a.a.a.b.b.c.b	ENSGT00990000204856	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Zebra mbuna	MODERN SPECIES	1101	fhl5 (ENSMZEG00005001974)	ENSMZEG00005001944	col10a1a (ENSMZEG00005001936)	marcksb (ENSMZEG00005001901)	fyna (ENSMZEG00005001875)	ENSMZEG00005001857	ENSMZEG00005001839	ENSMZEG00005001830	fabp7a (ENSMZEG00005001820)	ENSMZEG00005001723	TSPEAR (ENSMZEG00005001651)	sumo3b (ENSMZEG00005001623)	ENSMZEG00005001609	ENSMZEG00005001497	atg9a (ENSMZEG00005001449)	pcnt (ENSMZEG00005001272) #22	ENSMZEG00005001241	TRA2B (ENSMZEG00005001232)	ola1 (ENSMZEG00005001203)	ENSMZEG00005001190	uggt1 (ENSMZEG00005001047)	hs6st1b (ENSMZEG00005000997)	otomp (ENSMZEG00005000963)	acvr1l (ENSMZEG00005000913)	d2hgdh (ENSMZEG00005000872)	ENSMZEG00005000851	ENSMZEG00005000836	ENSMZEG00005000818	keap1a (ENSMZEG00005000769)	crlf1a (ENSMZEG00005000757)	odf3l2a (ENSMZEG00005000732)
Eastern happy	MODERN SPECIES	10	fhl5 (ENSACLG00000011881)	ENSACLG00000011744	col10a1a (ENSACLG00000011735)	marcksb (ENSACLG00000011685)	fyna (ENSACLG00000011671)	ENSACLG00000011656	ENSACLG00000011645	ENSACLG00000011640	fabp7a (ENSACLG00000011625)	ENSACLG00000011534	TSPEAR (ENSACLG00000011526)	sumo3b (ENSACLG00000011519)	ENSACLG00000011512	ENSACLG00000011479	atg9a (ENSACLG00000011454)	pcnt (ENSACLG00000011373) #22	ENSACLG00000011110	TRA2B (ENSACLG00000011095)	ola1 (ENSACLG00000011067)	ENSACLG00000011044	uggt1 (ENSACLG00000010862)	hs6st1b (ENSACLG00000010812)	otomp (ENSACLG00000010733)	acvr1l (ENSACLG00000010712)	d2hgdh (ENSACLG00000010697)	ENSACLG00000010689	ENSACLG00000010684	ENSACLG00000010660	keap1a (ENSACLG00000010637)	crlf1a (ENSACLG00000010610)	odf3l2a (ENSACLG00000010595)
P. nyererei	MODERN SPECIES	305	fut9a (ENSPNYG00000016223)	fhl5 (ENSPNYG00000016197)	ENSPNYG00000016160	col10a1a (ENSPNYG00000016146)	marcksb (ENSPNYG00000016118)	fyna (ENSPNYG00000016098)	ENSPNYG00000016076	ENSPNYG00000016064	fabp7a (ENSPNYG00000015683)	ENSPNYG00000015549	TSPEAR (ENSPNYG00000015434)	sumo3b (ENSPNYG00000015401)	ENSPNYG00000015393	ENSPNYG00000015305	atg9a (ENSPNYG00000015233)	pcnt (ENSPNYG00000015024) #22	ENSPNYG00000014980	TRA2B (ENSPNYG00000014955)	ola1 (ENSPNYG00000014943)	ENSPNYG00000014919	uggt1 (ENSPNYG00000014757)	hs6st1b (ENSPNYG00000014686)	otomp (ENSPNYG00000014659)	acvr1l (ENSPNYG00000014634)	d2hgdh (ENSPNYG00000014600)	ENSPNYG00000014576	ENSPNYG00000014566	ENSPNYG00000014520	keap1a (ENSPNYG00000014474)	crlf1a (ENSPNYG00000014455)	odf3l2a (ENSPNYG00000014438)
Burton s mouthbrooder	MODERN SPECIES	438	fut9a (ENSHBUG00000007402)	ENSHBUG00000006983	fhl5 (ENSHBUG00000006967)	col10a1a (ENSHBUG00000006937)	marcksb (ENSHBUG00000006933)	fyna (ENSHBUG00000006907)	ENSHBUG00000006865	ENSHBUG00000006853	fabp7a (ENSHBUG00000006848)	ENSHBUG00000006829	TSPEAR (ENSHBUG00000006725)	ENSHBUG00000006596	ENSHBUG00000006581	ENSHBUG00000006551	atg9a (ENSHBUG00000006428)	pcnt (ENSHBUG00000006340) #22	ENSHBUG00000006139	TRA2B (ENSHBUG00000006118)	ola1 (ENSHBUG00000006078)	SP3 (ENSHBUG00000006036)	uggt1 (ENSHBUG00000005999)	hs6st1b (ENSHBUG00000005898)	otomp (ENSHBUG00000005856)	acvr1l (ENSHBUG00000005813)	ENSHBUG00000005799	ENSHBUG00000005755	SSBP4 (ENSHBUG00000005735)	keap1a (ENSHBUG00000005682)	crlf1a (ENSHBUG00000005654)	odf3l2a (ENSHBUG00000005606)	ebi3 (ENSHBUG00000005596)
Lyretail cichlid	MODERN SPECIES	346	fhl5 (ENSNBRG00000023237)	ENSNBRG00000023221	col10a1a (ENSNBRG00000023211)	marcksb (ENSNBRG00000023189)	fyna (ENSNBRG00000023178)	ENSNBRG00000023163	ENSNBRG00000023158	ENSNBRG00000023148	fabp7a (ENSNBRG00000023141)	ENSNBRG00000023113	TSPEAR (ENSNBRG00000023075)	sumo3b (ENSNBRG00000023058)	ENSNBRG00000023039	ENSNBRG00000022997	atg9a (ENSNBRG00000022936)	pcnt (ENSNBRG00000022805) #22	ENSNBRG00000022774	TRA2B (ENSNBRG00000022760)	ola1 (ENSNBRG00000022738)	ENSNBRG00000022721	uggt1 (ENSNBRG00000022667)	hs6st1b (ENSNBRG00000022646)	ENSNBRG00000022635	otomp (ENSNBRG00000022622)	acvr1l (ENSNBRG00000022614)	ENSNBRG00000022594	ENSNBRG00000022579	ENSNBRG00000022563	keap1a (ENSNBRG00000022548)	crlf1a (ENSNBRG00000022536)	odf3l2a (ENSNBRG00000022523)
Midas cichlid	MODERN SPECIES	231	manea (ENSACIG00000015639)	fut9a (ENSACIG00000015654)	fhl5 (ENSACIG00000015671)	ENSACIG00000015693	col10a1a (ENSACIG00000015731)	marcksb (ENSACIG00000015747)	fyna (ENSACIG00000015783)	ENSACIG00000015805	fabp7a (ENSACIG00000015837)	ENSACIG00000016148	TSPEAR (ENSACIG00000016211)	sumo3b (ENSACIG00000016237)	ENSACIG00000016252	atg9a (ENSACIG00000016340)	ENSACIG00000016378	pcnt (ENSACIG00000016414) #22	ENSACIG00000016713	TRA2B (ENSACIG00000016739)	ola1 (ENSACIG00000016766)	ENSACIG00000016803	uggt1 (ENSACIG00000016835)	hs6st1b (ENSACIG00000016921)	otomp (ENSACIG00000016937)	acvr1l (ENSACIG00000016967)	d2hgdh (ENSACIG00000017057)	ENSACIG00000017088	ENSACIG00000017202	SSBP4 (ENSACIG00000017215)	keap1a (ENSACIG00000017236)	crlf1a (ENSACIG00000017261)	odf3l2a (ENSACIG00000017275)
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00390000016054.a	ENSGT00940000155095.i.a.f	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00940000154644.jb.b.f.b	ENSGT00390000016054.a	ENSGT00940000155095.i.a.f	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00390000016054.a	ENSGT00940000155095.i.a.f.c	ENSGT00940000155095.i.a.f.d	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
NAME_4	ANCESTRAL SPECIES	160			ENSGT00940000155095.i.a.f.d	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Sheepshead minnow	MODERN SPECIES	714				fhl5 (ENSCVAG00000003254)	col10a1a (ENSCVAG00000003260)	marcksb (ENSCVAG00000003267)	fyna (ENSCVAG00000003307)	ENSCVAG00000003317	fabp7a (ENSCVAG00000003322)	ENSCVAG00000003361	TSPEAR (ENSCVAG00000003372)	ENSCVAG00000003382	ENSCVAG00000003391	ENSCVAG00000003466	atg9a (ENSCVAG00000003531)	pcnt (ENSCVAG00000003848) #22	ENSCVAG00000003894	TRA2B (ENSCVAG00000003909)	ola1 (ENSCVAG00000003966)	ENSCVAG00000003995	uggt1 (ENSCVAG00000004143)	hs6st1b (ENSCVAG00000004175)
Mummichog	MODERN SPECIES	2458	fut9a (ENSFHEG00000010159)	fhl5 (ENSFHEG00000009976)	col10a1a (ENSFHEG00000009962)	marcksb (ENSFHEG00000009956)	fyna (ENSFHEG00000009938)	ENSFHEG00000009869	ENSFHEG00000009852	fabp7a (ENSFHEG00000009837)	ENSFHEG00000009827	TSPEAR (ENSFHEG00000009810)	sumo3b (ENSFHEG00000009799)	ENSFHEG00000009781	ENSFHEG00000009764	atg9a (ENSFHEG00000009644)	tbce (ENSFHEG00000000220)	pcnt (ENSFHEG00000009485) #22	ENSFHEG00000009269	ENSFHEG00000009260	TRA2B (ENSFHEG00000009235)	ola1 (ENSFHEG00000009030)	ENSFHEG00000008973	uggt1 (ENSFHEG00000008962)	hs6st1b (ENSFHEG00000008842)	otomp (ENSFHEG00000008795)	acvr1l (ENSFHEG00000008759)	d2hgdh (ENSFHEG00000008746)	ENSFHEG00000008712	ENSFHEG00000008734	ENSFHEG00000008704
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000155095.i.a.f.c	ENSGT00940000155095.i.a.f.d.c	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n.e	ENSGT00940000156713.n.f	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Poecilia	ANCESTRAL SPECIES	10	ENSGT00940000155095.i.a.f.d.d.a	ENSGT00940000155095.i.a.f.d.c	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n.e	ENSGT00940000156713.n.f	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
NAME_6	ANCESTRAL SPECIES	3	ENSGT00940000155095.i.a.f.d.d.a	ENSGT00940000155095.i.a.f.d.c	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n.e	ENSGT00940000156713.n.f	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Amazon molly	MODERN SPECIES	260	fut9a (ENSPFOG00000020422)	fhl5 (ENSPFOG00000015669)	fhl5 (ENSPFOG00000015681)	col10a1a (ENSPFOG00000015712)	marcksb (ENSPFOG00000015715)	fyna (ENSPFOG00000015722)	ENSPFOG00000023764	fabp7a (ENSPFOG00000015760)	fabp7a (ENSPFOG00000015765)	ENSPFOG00000015786	TSPEAR (ENSPFOG00000015928)	ENSPFOG00000015982	ENSPFOG00000015983	ENSPFOG00000015993	atg9a (ENSPFOG00000016076)	pcnt (ENSPFOG00000016128) #22	ENSPFOG00000016205	TRA2B (ENSPFOG00000016208)	ola1 (ENSPFOG00000016213)	ENSPFOG00000016261	uggt1 (ENSPFOG00000016300)	hs6st1b (ENSPFOG00000016587)	otomp (ENSPFOG00000016598)	acvr1l (ENSPFOG00000016625)	d2hgdh (ENSPFOG00000016660)	ENSPFOG00000016714	ENSPFOG00000016740	SSBP4 (ENSPFOG00000016754)
Sailfin molly	MODERN SPECIES	897							fabp7a (ENSPLAG00000017152)	fabp7a (ENSPLAG00000017148)	ENSPLAG00000017142	TSPEAR (ENSPLAG00000017128)	sumo3b (ENSPLAG00000017048)	ENSPLAG00000017040	ENSPLAG00000017027	ENSPLAG00000017000	atg9a (ENSPLAG00000016977)	pcnt (ENSPLAG00000016921) #22	ENSPLAG00000016723	TRA2B (ENSPLAG00000016709)	ola1 (ENSPLAG00000016640)	ENSPLAG00000016589	uggt1 (ENSPLAG00000016547)
Guppy	MODERN SPECIES	453	fut9a (ENSPREG00000006790)	fut9a (ENSPREG00000006773)	fhl5 (ENSPREG00000006746)	col10a1a (ENSPREG00000006734)	marcksb (ENSPREG00000006707)	fyna (ENSPREG00000006673)	ENSPREG00000006643	fabp7a (ENSPREG00000006428)	fabp7a (ENSPREG00000006283)	ENSPREG00000006247	TSPEAR (ENSPREG00000006227)	sumo3b (ENSPREG00000006212)	ENSPREG00000006205	ENSPREG00000006160	atg9a (ENSPREG00000006117)	pcnt (ENSPREG00000005947) #22	ENSPREG00000005907	TRA2B (ENSPREG00000005879)	ola1 (ENSPREG00000005840)	ENSPREG00000005818	uggt1 (ENSPREG00000005619)	ENSPREG00000005546	adprs (ENSPREG00000005535)	ENSPREG00000005386	utp25 (ENSPREG00000005340)	ENSPREG00000005334	TMEM151B (ENSPREG00000005318)	mtres1 (ENSPREG00000005297)	bend3 (ENSPREG00000005286)	pdss2 (ENSPREG00000005275)	sobpa (ENSPREG00000005227)
Platyfish	MODERN SPECIES	10	fut9a (ENSXMAG00000000713)	fhl5 (ENSXMAG00000000710)	col10a1a (ENSXMAG00000020162)	marcksb (ENSXMAG00000021623)	fyna (ENSXMAG00000009720)	ENSXMAG00000009743	ENSXMAG00000021917	fabp7a (ENSXMAG00000009736)	ENSXMAG00000009748	fabp7a (ENSXMAG00000009747)	TSPEAR (ENSXMAG00000009750)	sumo3b (ENSXMAG00000026869)	ENSXMAG00000009754	ENSXMAG00000009757	atg9a (ENSXMAG00000009801)	pcnt (ENSXMAG00000009826) #22	ENSXMAG00000009832	TRA2B (ENSXMAG00000009835)	ola1 (ENSXMAG00000009840)	ENSXMAG00000009872	uggt1 (ENSXMAG00000009880)	hs6st1b (ENSXMAG00000009977)	otomp (ENSXMAG00000009978)	acvr1l (ENSXMAG00000024794)	ENSXMAG00000009984	ENSXMAG00000010020	SSBP4 (ENSXMAG00000025419)	keap1a (ENSXMAG00000010053)	crlf1a (ENSXMAG00000010072)	odf3l2a (ENSXMAG00000023708)	ebi3 (ENSXMAG00000006449)
Aplocheiloidei	ANCESTRAL SPECIES	15	ENSGT00390000016054.a	ENSGT00940000155095.i.a.f.a	ENSGT00940000155095.i.a.f.b	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b	ENSGT00940000160050
Mangrove rivulus	MODERN SPECIES	1	manea (ENSKMAG00000011704)	fut9a (ENSKMAG00000011734)	fut9a (ENSKMAG00000011748)	fhl5 (ENSKMAG00000011760)	col10a1a (ENSKMAG00000011777)	marcksb (ENSKMAG00000011785)	fyna (ENSKMAG00000011800)	fabp7a (ENSKMAG00000011821)	ENSKMAG00000011865	TSPEAR (ENSKMAG00000011978)	sumo3b (ENSKMAG00000012006)	ENSKMAG00000012027	ENSKMAG00000012048	ENSKMAG00000012112	atg9a (ENSKMAG00000012147)	pcnt (ENSKMAG00000012283) #22	TRA2B (ENSKMAG00000012538)	ola1 (ENSKMAG00000012576)	ENSKMAG00000012621	uggt1 (ENSKMAG00000012658)	hs6st1b (ENSKMAG00000012735)	otomp (ENSKMAG00000012763)	acvr1l (ENSKMAG00000012798)	d2hgdh (ENSKMAG00000012828)	ELL (ENSKMAG00000012864)	ENSKMAG00000012923	keap1a (ENSKMAG00000013048)	crlf1a (ENSKMAG00000013097)	odf3l2a (ENSKMAG00000013139)	ebi3 (ENSKMAG00000013174)	ENSKMAG00000013185
Oryzias	ANCESTRAL SPECIES	3	ENSGT00940000155095.i.a.f	ENSGT00940000155095.i.a.e.a	ENSGT00940000155095.i.a.e.b	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b	ENSGT00940000160050
Oryzias_b	ANCESTRAL SPECIES	12	ENSGT00940000155095.i.a.f	ENSGT00940000155095.i.a.e.a	ENSGT00940000155095.i.a.e.b	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.a	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b	ENSGT00940000160050
Indian medaka	MODERN SPECIES		ENSOMEG00000013646	FUT9 (ENSOMEG00000013640)	FUT9 (ENSOMEG00000013634)	fhl5 (ENSOMEG00000013623)	col10a1a (ENSOMEG00000013605)	marcksb (ENSOMEG00000000346)	fyna (ENSOMEG00000013551)	ENSOMEG00000013513	fabp7a (ENSOMEG00000013438)	ENSOMEG00000013489	TSPEAR (ENSOMEG00000000338)	sumo3a (ENSOMEG00000013372)	ENSOMEG00000013356	ENSOMEG00000013326	atg9a (ENSOMEG00000013216)	pcnt (ENSOMEG00000013043) #22	ENSOMEG00000012852	ENSOMEG00000012826	ola1 (ENSOMEG00000012796)	ENSOMEG00000012714	ENSOMEG00000012623	ENSOMEG00000012606	ENSOMEG00000012565	hs6st1b (ENSOMEG00000001025)	ENSOMEG00000012518	otomp (ENSOMEG00000012488)	acvr1l (ENSOMEG00000012435)	d2hgdh (ENSOMEG00000012390)	ENSOMEG00000012322	ENSOMEG00000012274	ENSOMEG00000012212
Oryzias_a	ANCESTRAL SPECIES	11	ENSGT00940000155095.i.a.f	ENSGT00940000155095.i.a.e.a	ENSGT00940000155095.i.a.e.b	ENSGT00950000183028.a.a.b	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b	ENSGT00940000160050
Japanese Medaka HdrR	MODERN SPECIES	14	fut9b (ENSORLG00000013385)	fut9c (ENSORLG00000013390)	fhl5 (ENSORLG00000013430)	col10a1a (ENSORLG00000013436)	marcksb (ENSORLG00000013439)	fyna (ENSORLG00000013453)	ENSORLG00000013462	fabp7a (ENSORLG00000013475)	ENSORLG00000013504	ENSORLG00000013516	sumo3a (ENSORLG00000013523)	ENSORLG00000028257	ENSORLG00000013589	ENSORLG00000027840	atg9a (ENSORLG00000013642)	pcnt (ENSORLG00000013666) #22	ENSORLG00000013689	ENSORLG00000013780	ola1 (ENSORLG00000013788)	ENSORLG00000013706	uggt1 (ENSORLG00000013749)	hs6st1b (ENSORLG00000013805)	ENSORLG00000027515	acvr1l (ENSORLG00000013834)	otomp (ENSORLG00000013815)	d2hgdh (ENSORLG00000013844)	ENSORLG00000013871	ENSORLG00000013936	keap1a (ENSORLG00000013993)	crlf1a (ENSORLG00000014003)	odf3l2a (ENSORLG00000014016)
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Carangaria	ANCESTRAL SPECIES	10	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Pleuronectoidei	ANCESTRAL SPECIES	5	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Turbot	MODERN SPECIES	8	manea (ENSSMAG00000018492)	fut9a (ENSSMAG00000036298)	fhl5 (ENSSMAG00000018422)	ENSSMAG00000018420	col10a1a (ENSSMAG00000018410)	marcksb (ENSSMAG00000035406)	fyna (ENSSMAG00000018379)	ENSSMAG00000018368	ENSSMAG00000018354	fabp7a (ENSSMAG00000018351)	ENSSMAG00000018321	ENSSMAG00000018266	pttg1ipa (ENSSMAG00000031719)	ENSSMAG00000018133	atg9a (ENSSMAG00000018039)	ENSSMAG00000017741 #22	ENSSMAG00000017717	ENSSMAG00000017702	ENSSMAG00000017661	ENSSMAG00000017630	uggt1 (ENSSMAG00000017581)	ENSSMAG00000017551	otomp (ENSSMAG00000017539)	acvr1l (ENSSMAG00000017497)	d2hgdh (ENSSMAG00000017454)	ENSSMAG00000037066	ENSSMAG00000017441	ENSSMAG00000017406	keap1a (ENSSMAG00000017380)	crlf1a (ENSSMAG00000017309)	odf3l2a (ENSSMAG00000017287)
Tongue sole	MODERN SPECIES		fut9a (ENSCSEG00000003166)	fhl5 (ENSCSEG00000003108)	ENSCSEG00000003097	col10a1a (ENSCSEG00000003094)	marcksb (ENSCSEG00000003088)	fyna (ENSCSEG00000003064)	ENSCSEG00000003061	fabp7a (ENSCSEG00000003055)	ENSCSEG00000003038	TSPEAR (ENSCSEG00000003018)	SUMO3 (ENSCSEG00000003010)	ENSCSEG00000003006	ENSCSEG00000002982	mns1 (ENSCSEG00000002966)	atg9a (ENSCSEG00000002938)	pcnt (ENSCSEG00000002898) #22	ENSCSEG00000002888	TRA2B (ENSCSEG00000002877)	tmem30b (ENSCSEG00000002873)	kdm1a (ENSCSEG00000002808)	PTAFR (ENSCSEG00000002801)	pacrg (ENSCSEG00000002791)	qkia (ENSCSEG00000002782)	ctsl.1 (ENSCSEG00000002733)	vgll2b (ENSCSEG00000002722)	ythdf2 (ENSCSEG00000002716)	id3 (ENSCSEG00000002710)	ENSCSEG00000002705	ENSCSEG00000002690	DLK1 (ENSCSEG00000002681)	ENSCSEG00000002676
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00950000183028.a.a.b.d	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Seriola	ANCESTRAL SPECIES	3	ENSGT00950000183028.a.a.b.d	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Greater amberjack	MODERN SPECIES	62	fhl5 (ENSSDUG00000014607)	ENSSDUG00000014576	col10a1a (ENSSDUG00000014571)	marcksb (ENSSDUG00000014545)	fyna (ENSSDUG00000014501)	ENSSDUG00000014487	ENSSDUG00000014457	fabp7a (ENSSDUG00000014441)	ENSSDUG00000014402	TSPEAR (ENSSDUG00000014330)	ENSSDUG00000014318	ENSSDUG00000014311	ENSSDUG00000014240	atg9a (ENSSDUG00000014164)	zgc:112416 (ENSSDUG00000014069) #21	pcnt (ENSSDUG00000013810) #22	ENSSDUG00000013759	TRA2B (ENSSDUG00000013749)	ola1 (ENSSDUG00000013714)	ENSSDUG00000013686	uggt1 (ENSSDUG00000013603)	hs6st1b (ENSSDUG00000013575)	otomp (ENSSDUG00000013538)	acvr1l (ENSSDUG00000013523)	d2hgdh (ENSSDUG00000013492)	ENSSDUG00000013474	ENSSDUG00000013458	ENSSDUG00000013426	keap1a (ENSSDUG00000013386)	crlf1a (ENSSDUG00000013336)	odf3l2a (ENSSDUG00000013302)
Yellowtail amberjack	MODERN SPECIES	2077													ENSSLDG00000014075	atg9a (ENSSLDG00000014096)	zgc:112416 (ENSSLDG00000014181) #21	pcnt (ENSSLDG00000014319) #22	ENSSLDG00000014607	TRA2B (ENSSLDG00000014631)	ola1 (ENSSLDG00000014654)
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.a	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.u.a	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a
Siamese fighting fish	MODERN SPECIES	12	fut9a (ENSBSLG00000017559)	fhl5 (ENSBSLG00000017572)	ENSBSLG00000017605	col10a1a (ENSBSLG00000017628)	marcksb (ENSBSLG00000017635)	fyna (ENSBSLG00000017694)	ENSBSLG00000018976	fabp7a (ENSBSLG00000019185)	ENSBSLG00000019215	TSPEAR (ENSBSLG00000019301)	ENSBSLG00000019412	ENSBSLG00000019463	ENSBSLG00000019483	atg9a (ENSBSLG00000019864)	zgc:112416 (ENSBSLG00000020378) #21	pcnt (ENSBSLG00000021205) #22	ENSBSLG00000021705	TRA2B (ENSBSLG00000021742)	ola1 (ENSBSLG00000021790)	ENSBSLG00000022019	uggt1 (ENSBSLG00000022072)	hs6st1b (ENSBSLG00000022354)	otomp (ENSBSLG00000022464)	acvr1l (ENSBSLG00000022490)	d2hgdh (ENSBSLG00000022516)	ENSBSLG00000022810	ENSBSLG00000022867	SSBP4 (ENSBSLG00000022929)	keap1a (ENSBSLG00000023461)	ENSBSLG00000023481	crlf1a (ENSBSLG00000023494)
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000155095.i.a.i	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b	ENSGT00940000160050
Fugu	MODERN SPECIES	11	fut9c (ENSTRUG00000032299)	fut9 (ENSTRUG00000014680)	fhl5 (ENSTRUG00000014684)	ENSTRUG00000024384	col10a1a (ENSTRUG00000014734)	marcksb (ENSTRUG00000025041)	fyna (ENSTRUG00000014739)	ENSTRUG00000027072	ENSTRUG00000026588	fabp7a (ENSTRUG00000024156)	ENSTRUG00000014832	TSPEAR (ENSTRUG00000014874)	ENSTRUG00000030769	ENSTRUG00000025356	atg9a (ENSTRUG00000015086)	pcnt (ENSTRUG00000029342) #22	ENSTRUG00000024268	TRA2B (ENSTRUG00000015168)	ola1 (ENSTRUG00000015215)	ENSTRUG00000015246	uggt1 (ENSTRUG00000015281)	hs6st1b (ENSTRUG00000015423)	otomp (ENSTRUG00000015460)	acvr1l (ENSTRUG00000015474)	d2hgdh (ENSTRUG00000015514)	ENSTRUG00000026706	ENSTRUG00000015535	SSBP4 (ENSTRUG00000015567)	keap1a (ENSTRUG00000015644)	crlf1a (ENSTRUG00000015730)	odf3l2a (ENSTRUG00000015738)
Tetraodon	MODERN SPECIES	1	fut9a (ENSTNIG00000017224)	fhl5 (ENSTNIG00000017223)	col10a1a (ENSTNIG00000017222)	marcksb (ENSTNIG00000000080)	fyna (ENSTNIG00000017221)	marcksb (ENSTNIG00000017220)	fyna (ENSTNIG00000017219)	ENSTNIG00000017218	fabp7a (ENSTNIG00000017217)	ENSTNIG00000017216	TSPEAR (ENSTNIG00000017215)	ENSTNIG00000017214	ENSTNIG00000017213	ENSTNIG00000017212	atg9a (ENSTNIG00000001749)	ENSTNIG00000017211 #22	TRA2B (ENSTNIG00000017210)	ola1 (ENSTNIG00000017209)	ENSTNIG00000017208	uggt1 (ENSTNIG00000017207)	hs6st1b (ENSTNIG00000017206)	otomp (ENSTNIG00000017205)	acvr1l (ENSTNIG00000002260)	d2hgdh (ENSTNIG00000017204)	ENSTNIG00000017203	SSBP4 (ENSTNIG00000017202)	keap1a (ENSTNIG00000017201)	crlf1a (ENSTNIG00000001783)	odf3l2a (ENSTNIG00000017200)	ebi3 (ENSTNIG00000001785)	ENSTNIG00000017199
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00950000183028.a.a.b	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b.d	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	16	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000164609.b	ENSGT00990000204856	ENSGT01090000260229	ENSGT00940000156713.n	ENSGT00940000157267	ENSGT00510000047718.c	ENSGT00950000182895.a.b.v.k.m.b	ENSGT00390000004977.d.b	ENSGT00940000164909.e.b	ENSGT00390000014839.b	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a	ENSGT00950000183009.db.a	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00390000004600.b.a	ENSGT00950000183071.a.a.b.c	ENSGT00940000166763	ENSGT00940000166078	ENSGT00550000075086	ENSGT00940000155914.c.b.d	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a	ENSGT00940000160480.c.b
European seabass	MODERN SPECIES	2	ENSDLAG00005004516	ENSDLAG00005030031	col10a1a (ENSDLAG00005004562)	marcksb (ENSDLAG00005004646)	fyna (ENSDLAG00005004742)	ENSDLAG00005007243	ENSDLAG00005030192	ENSDLAG00005032112	fabp7a (ENSDLAG00005027308)	ENSDLAG00005007273	ENSDLAG00005007352	ENSDLAG00005029107	ENSDLAG00005007433	atg9a (ENSDLAG00005007653)	ENSDLAG00005007783 #21	ENSDLAG00005032411 #22	ENSDLAG00005007837	ENSDLAG00005007955	uggt1 (ENSDLAG00005008037)	ENSDLAG00005009425	otomp (ENSDLAG00005009478)	acvr1l (ENSDLAG00005009489)	d2hgdh (ENSDLAG00005009591)	ENSDLAG00005009882	ENSDLAG00005009894	ENSDLAG00005033152	keap1a (ENSDLAG00005009923)	crlf1a (ENSDLAG00005010017)	odf3l2a (ENSDLAG00005010111)	ebi3 (ENSDLAG00005010114)	ENSDLAG00005032040
Ballan wrasse	MODERN SPECIES	473									fabp7a (ENSLBEG00000020029)	ENSLBEG00000019893	TSPEAR (ENSLBEG00000019781)	ENSLBEG00000019743	ENSLBEG00000019731	ENSLBEG00000019614	atg9a (ENSLBEG00000019551)	pcnt (ENSLBEG00000019132) #22	ENSLBEG00000018995	TRA2B (ENSLBEG00000018978)	ola1 (ENSLBEG00000018929)	ENSLBEG00000018876	uggt1 (ENSLBEG00000018783)	hs6st1b (ENSLBEG00000018727)
Tiger tail seahorse	MODERN SPECIES	204	fut9a (ENSHCOG00000020673)	fhl5 (ENSHCOG00000020655)	col10a1a (ENSHCOG00000020633)	marcksb (ENSHCOG00000020632)	fyna (ENSHCOG00000020626)	ENSHCOG00000020600	fabp7a (ENSHCOG00000020590)	ENSHCOG00000020587	TSPEAR (ENSHCOG00000020571)	UTP14C (ENSHCOG00000020563)	ENSHCOG00000020554	ENSHCOG00000020544	ENSHCOG00000020525	ENSHCOG00000020410	atg9a (ENSHCOG00000020389)	pcnt (ENSHCOG00000020359) #22	ENSHCOG00000020103	TRA2B (ENSHCOG00000020095)	ola1 (ENSHCOG00000020085)	ENSHCOG00000020037	uggt1 (ENSHCOG00000020008)	hs6st1b (ENSHCOG00000019856)	TC2N (ENSHCOG00000019824)	fbln5 (ENSHCOG00000019807)	trip11 (ENSHCOG00000019787)	golga5 (ENSHCOG00000019607)	rtf1 (ENSHCOG00000019565)	ndufaf1 (ENSHCOG00000019472)	ezra (ENSHCOG00000019329)	ENSHCOG00000019306	ENSHCOG00000019276
Pinecone sodierfish	MODERN SPECIES	14	fut9a (ENSMMDG00005007797)	fhl5 (ENSMMDG00005007795)	ENSMMDG00005007792	col10a1a (ENSMMDG00005007791)	marcksb (ENSMMDG00005007788)	fyna (ENSMMDG00005007339)	ENSMMDG00005007332	fabp7a (ENSMMDG00005007318)	ENSMMDG00005007309	TSPEAR (ENSMMDG00005007303)	ENSMMDG00005007298	ENSMMDG00005007292	ENSMMDG00005007261	atg9a (ENSMMDG00005007226)	zgc:112416 (ENSMMDG00005007217) #21	ENSMMDG00005007208 #22	ENSMMDG00005007197	TRA2B (ENSMMDG00005007194)	ola1 (ENSMMDG00005007174)	ENSMMDG00005023493	uggt1 (ENSMMDG00005023163)	hs6st1b (ENSMMDG00005023123)	otomp (ENSMMDG00005023121)	acvr1l (ENSMMDG00005023119)	d2hgdh (ENSMMDG00005023110)	ENSMMDG00005023097	ENSMMDG00005023093	SSBP4 (ENSMMDG00005023090)	keap1a (ENSMMDG00005023068)	crlf1a (ENSMMDG00005023064)	odf3l2a (ENSMMDG00005023063)
Protacanthopterygii	ANCESTRAL SPECIES	316															ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a
Salmoninae	ANCESTRAL SPECIES	495			ENSGT00440000033329.b.a.a.c.b	ENSGT00390000014839.b.f	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00510000047718.c	ENSGT00940000157267.a	ENSGT00390000011514 #21	ENSGT00940000155489.a.d	ENSGT00950000183009.db.a.a.a	ENSGT00940000155099.k.b.e.b.a	ENSGT00390000000673.a.b.c	ENSGT00940000157267.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a.c	ENSGT00950000183009.db.a.a.b	ENSGT00940000155099.k.b.e.b.b	ENSGT00390000000673.a.b.d	ENSGT00950000183052.b.c.b.a.e.a	ENSGT00940000156207.b.c.a.a.b.a	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2526																ENSHHUG00000045656 #22	ENSHHUG00000045649	TRA2B (ENSHHUG00000045637)	ENSHHUG00000045635	ENSHHUG00000045589	ENSHHUG00000045571	ENSHHUG00000045563	ENSHHUG00000045560
Huchen	MODERN SPECIES	358											ENSHHUG00000010227	ENSHHUG00000010219	ENSHHUG00000010007	ENSHHUG00000009995	ENSHHUG00000009929	ENSHHUG00000009808 #22	slc13a3 (ENSHHUG00000009750)	mc3r (ENSHHUG00000009698)	tcf15 (ENSHHUG00000009689)	SRXN1 (ENSHHUG00000009684)	scrt2 (ENSHHUG00000009674)	slc52a3 (ENSHHUG00000009650)	ENSHHUG00000009628	peds1 (ENSHHUG00000009605)	cebpb (ENSHHUG00000009597)	ptpn1 (ENSHHUG00000009570)	KLHL12 (ENSHHUG00000009536)	ENSHHUG00000009513	KDM5B (ENSHHUG00000009273)	LMOD1 (ENSHHUG00000009257)	ENSHHUG00000009244
Salmoninae_a	ANCESTRAL SPECIES	49	ENSGT00940000164246.C.d.b.b	ENSGT00390000009178.g	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00940000155107.b.a.f	ENSGT00940000155063.a.b	ENSGT00440000033329.b.a.a.c.b	ENSGT00390000014839.b.f.a	ENSGT00940000176997	ENSGT00390000014839.b.f.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00510000047718.c	ENSGT00940000157267.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a.d	ENSGT00950000183009.db.a.a.a	ENSGT00940000155099.k.b.e.b.a	ENSGT00390000000673.a.b.c	ENSGT00940000163513.d	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00390000004600.b.a.h	ENSGT00950000183071.a.a.b.c.a.b	ENSGT00940000166763.d	ENSGT00940000166078.c	ENSGT00550000075086.d	ENSGT00940000165458	ENSGT00940000156569.a.b.a.f	ENSGT00940000160480.c.b.d	ENSGT00940000160050
Oncorhynchus	ANCESTRAL SPECIES	49	ENSGT00390000012496.a.c.b.b.b	ENSGT00940000164480.a.a.g.a.a.a	ENSGT00940000164246.C.d.b.b	ENSGT00980000198666	ENSGT00390000009178.g	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00940000155107.b.a.f	ENSGT00940000155063.a.b.e	ENSGT00440000033329.b.a.a.c.b	ENSGT00390000014839.b.f.a	ENSGT00390000014839.b.f.b	ENSGT00940000164909.e.b.i	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00940000157267.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a.c.b	ENSGT00950000183009.db.a.b.b	ENSGT00940000155099.k.b.e.b.b	ENSGT00390000000673.a.b.d	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.a.b	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.b	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT00390000004600.b.a.g	ENSGT00950000183071.a.a.b.c.a.b.b	ENSGT00940000166763.d.b	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.c	ENSGT00940000166078.d	ENSGT00550000075086.c	ENSGT00390000012355.A.b	ENSGT00950000183049.C.a.b.g
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000019377.b.e.c	ENSGT00390000019377.b.e.d.a.a	ENSGT00390000012496.a.c.b.b.b	ENSGT00940000164480.a.a.g.b	ENSGT00980000198666	ENSGT00390000009178.g	ENSGT01090000260082.d.a.b.q.a.b	ENSGT00940000155107.b.a.f	ENSGT00940000155063.a.b.e	ENSGT00440000033329.b.a.a.c.b	ENSGT00390000014839.b.f.a	ENSGT00940000176997	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00940000157267.b	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a.c.b	ENSGT00950000183009.db.a.b.b	ENSGT00940000155099.k.b.e.b.b	ENSGT00390000000673.a.b.d	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.a	ENSGT00390000004600.b.a.g	ENSGT00950000183071.a.a.b.c.a.b.b	ENSGT00940000166763.d.b	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.c	ENSGT00940000166078.d	ENSGT00550000075086.c	ENSGT00940000156569.a.b.a.e	ENSGT00940000160480.c.b.c	ENSGT00530000063615.a.q.b.a	ENSGT00940000159004.a.d.a.b
Chinook salmon	MODERN SPECIES	31	DBI (ENSOTSG00005007296)	STEAP3 (ENSOTSG00005007293)	ENSOTSG00005007292	scn1lab (ENSOTSG00005007291)	ENSOTSG00005007290	ENSOTSG00005007288	ENSOTSG00005007287	B3GALT1 (ENSOTSG00005007286)	ENSOTSG00005007254	ENSOTSG00005007248	ENSOTSG00005041199	ENSOTSG00005041197	ENSOTSG00005041196	ENSOTSG00005041195	ENSOTSG00005041194	pcnt (ENSOTSG00005041185) #22	ENSOTSG00005041180	TRA2B (ENSOTSG00005041109)	ENSOTSG00005041040	ENSOTSG00005041025	ENSOTSG00005041023	ENSOTSG00005041022	ENSOTSG00005041021	ENSOTSG00005041020	ENSOTSG00005041019	uggt1 (ENSOTSG00005040996)	OXGR1 (ENSOTSG00005040994)	ENSOTSG00005040993	dzip1 (ENSOTSG00005040992)	ENSOTSG00005040991	ENSOTSG00005040990
Salmo	ANCESTRAL SPECIES	48	ENSGT00940000164246.C.d.b.a	ENSGT00390000009178.h	ENSGT00940000163999.a.c.a.b.a.a.b	ENSGT00940000163999.a.c.a.b.a.a.a	ENSGT00940000163999.a.c.a.b.a.b	ENSGT01090000260082.d.a.b.q.a.a	ENSGT00940000155063.a.b.d	ENSGT00440000033329.b.a.a.c.a	ENSGT00390000014839.b.f.b.a	ENSGT00940000164909.e.b.l	ENSGT00390000004977.d.b.e	ENSGT00950000182895.a.b.v.j.a.b	ENSGT00510000047718.c	ENSGT00940000157267.a	ENSGT00390000011514 #21	ENSGT00730000110871.a.a.a.b #22	ENSGT00940000155489.a.d	ENSGT00950000183009.db.a.a.a	ENSGT00940000155099.k.b.e.b.a	ENSGT00390000000673.a.b.c	ENSGT00940000163513.d	ENSGT01100000263520.a.b.a.a.a.b.b.a.b.a.b.a.b	ENSGT00390000004600.b.a.h	ENSGT00950000183071.a.a.b.c.a.a	ENSGT00940000166763.c	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.b.b.a	ENSGT00550000075086.d	ENSGT00950000183049.C.a.b	ENSGT00940000165458	ENSGT00940000156569.a.b.a.f	ENSGT00940000160480.c.b.d
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000017255	ENSSSAG00000094502	ENSSSAG00000066641	ENSSSAG00000088381	ENSSSAG00000066649	ENSSSAG00000066692	ENSSSAG00000067494	ENSSSAG00000114816	ENSSSAG00000078382	ENSSSAG00000078456	ENSSSAG00000111098	ENSSSAG00000078591	ENSSSAG00000078597	ENSSSAG00000078620	ENSSSAG00000078698 #21	ENSSSAG00000072765 #22	ENSSSAG00000083359	ENSSSAG00000078718	ENSSSAG00000078759	ENSSSAG00000078778	ENSSSAG00000078811	ENSSSAG00000092203	ENSSSAG00000116422	ENSSSAG00000078840	ENSSSAG00000079371	acvr1l (ENSSSAG00000079396)	otomp (ENSSSAG00000103893)	ENSSSAG00000094489	ENSSSAG00000079387	d2hgdh (ENSSSAG00000079411)	ENSSSAG00000079443
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.b #22
P. kingsleyae	MODERN SPECIES	393	ENSPKIG00000022959	ENSPKIG00000022972	ENSPKIG00000023129	LIMD1 (ENSPKIG00000023463)	lars2 (ENSPKIG00000023485)	TMEM158 (ENSPKIG00000023501)	s100t (ENSPKIG00000023515)	CHRNB2 (ENSPKIG00000023534)	SHE (ENSPKIG00000023556)	ENSPKIG00000023587	zgc:123238 (ENSPKIG00000023636)	ubap2l (ENSPKIG00000023687)	ENSPKIG00000023783	aqp10a (ENSPKIG00000023799)	ENSPKIG00000023836	pcnt (ENSPKIG00000023895) #22
Spotted gar	MODERN SPECIES	650	xrcc5 (ENSLOCG00000009725)	zgc:162816 (ENSLOCG00000009716)	COL6A2 (ENSLOCG00000009684) #15	COL6A1 (ENSLOCG00000009665) #14	marchf4l (ENSLOCG00000009654)	SMARCAL1 (ENSLOCG00000009637)	nme9 (ENSLOCG00000009626)	vps8 (ENSLOCG00000009601)	zgc:162707 (ENSLOCG00000009596)	ehhadh (ENSLOCG00000009587)	tmem41ab (ENSLOCG00000009578)	igf2bp2b (ENSLOCG00000009564)	ENSLOCG00000009558	ENSLOCG00000009546	zgc:112416 (ENSLOCG00000009535) #21	pcnt (ENSLOCG00000009517) #22	ENSLOCG00000009506	ENSLOCG00000009495	atg9a (ENSLOCG00000009485)	ANKZF1 (ENSLOCG00000009473)	glb1l (ENSLOCG00000009458)	ENSLOCG00000009450	ENSLOCG00000009424	ENSLOCG00000009417	sumo3a (ENSLOCG00000009407)	ube2g2 (ENSLOCG00000009402)	ENSLOCG00000009398	TSPEAR (ENSLOCG00000009387)	lrrc3 (ENSLOCG00000017837)	pcbp3 (ENSLOCG00000009369)	SLC19A1 (ENSLOCG00000009360) #12
Reedfish	MODERN SPECIES	16	SMARCAL1 (ENSECRG00000007504)	nme9 (ENSECRG00000007549)	ENSECRG00000007596	ENSECRG00000007604	ENSECRG00000007613	ENSECRG00000007625	vps8 (ENSECRG00000007666)	zgc:162707 (ENSECRG00000007736)	ehhadh (ENSECRG00000007747)	tmem41ab (ENSECRG00000007758)	igf2bp2b (ENSECRG00000007792)	ENSECRG00000007849	tra2b (ENSECRG00000007859)	ENSECRG00000014067	ENSECRG00000014128 #21	pcnt (ENSECRG00000014289) #22	ENSECRG00000014560	ENSECRG00000014597	SLC19A1 (ENSECRG00000014629) #12	pcbp3 (ENSECRG00000014656)	ENSECRG00000014731	ENSECRG00000014778 #11	ENSECRG00000014860	ENSECRG00000015023	CTDSP1 (ENSECRG00000015459)	SPEGNB (ENSECRG00000015486)	ENSECRG00000015504	spega (ENSECRG00000015550)	inha (ENSECRG00000015694)	gjc4b (ENSECRG00000015712)	ENSECRG00000015739
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1724													ENSCMIG00000015533 #21	ybey (ENSCMIG00000015526) #20	MCM3AP (ENSCMIG00000015521) #19	ENSCMIG00000015516 #22	ENSCMIG00000015506 #22	lss (ENSCMIG00000015372) #18	SPATC1L (ENSCMIG00000015329) #17	ftcd (ENSCMIG00000015307) #16	ENSCMIG00000015300	snx4 (ENSCMIG00000015294)	ENSCMIG00000015275	OSBPL11 (ENSCMIG00000015270)	gpd1c (ENSCMIG00000015264)	LMLN (ENSCMIG00000015251)	ENSCMIG00000015233
Elephant shark	MODERN SPECIES	1724												ENSCMIG00000015533 #21	ybey (ENSCMIG00000015526) #20	MCM3AP (ENSCMIG00000015521) #19	ENSCMIG00000015516 #22	ENSCMIG00000015506 #22	lss (ENSCMIG00000015372) #18	SPATC1L (ENSCMIG00000015329) #17	ftcd (ENSCMIG00000015307) #16	ENSCMIG00000015300	snx4 (ENSCMIG00000015294)	ENSCMIG00000015275	OSBPL11 (ENSCMIG00000015270)	gpd1c (ENSCMIG00000015264)	LMLN (ENSCMIG00000015251)	ENSCMIG00000015233
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.b.a #22
Lamprey	MODERN SPECIES	592																ENSPMAG00000007625 #22	cyp51 (ENSPMAG00000007601)
Hagfish	MODERN SPECIES	758											ENSEBUG00000009059	ENSEBUG00000006816	ENSEBUG00000013047	ENSEBUG00000008894	ENSEBUG00000007014 #22	ENSEBUG00000005298 #22	ENSEBUG00000016466	ankib1a (ENSEBUG00000006186)	ENSEBUG00000003038	ENSEBUG00000015241
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.b.b #22
Hagfish	MODERN SPECIES	758												ENSEBUG00000009059	ENSEBUG00000006816	ENSEBUG00000013047	ENSEBUG00000008894	ENSEBUG00000007014 #22	ENSEBUG00000005298 #22	ENSEBUG00000016466	ankib1a (ENSEBUG00000006186)	ENSEBUG00000003038	ENSEBUG00000015241
Vertebrata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	234										ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT01050000244890.b
Elephant shark	MODERN SPECIES	1541												cdk14 (ENSCMIG00000018395)	fzd1 (ENSCMIG00000018416)	MTERF1 (ENSCMIG00000018417)	LRRD1 (ENSCMIG00000018419)	ENSCMIG00000018427 ##22	ENSCMIG00000018431 ##22	ENSCMIG00000018455	cyp51 (ENSCMIG00000018475)	krit1 (ENSCMIG00000018508)	ENSCMIG00000018513	ANKIB1 (ENSCMIG00000018549)	gatad1 (ENSCMIG00000018630)	ENSCMIG00000018632	gpd1l (ENSCMIG00000018634)	cmtm8b (ENSCMIG00000018635)	cmtm7 (ENSCMIG00000018637)	ENSCMIG00000018639	dync1li1 (ENSCMIG00000018671)	ENSCMIG00000018790	TMEFF1 (ENSCMIG00000018817)
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Episquamata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Elapidae	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Blue-lipped sea krait	MODERN SPECIES	2691																ENSLLTG00000001517 ##22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a ##22
Mainland tiger snake	MODERN SPECIES	1099																ENSNSUG00000005957 ##22
Actinopterygii	ANCESTRAL SPECIES	9	ENSGT00940000161184	ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Neopterygii	ANCESTRAL SPECIES	7	ENSGT00940000161184	ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Osteoglossocephalai	ANCESTRAL SPECIES	322											ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554
Clupeocephala	ANCESTRAL SPECIES	455													ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A
Euteleosteomorpha	ANCESTRAL SPECIES	241									ENSGT00940000161408	ENSGT00950000183051.a.a.a	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00530000064067
Acanthomorphata	ANCESTRAL SPECIES	22	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	2	rplp1 (ENSMMDG00005003107)	PTK2 (ENSMMDG00005003089)	DENND3 (ENSMMDG00005002895)	SLC45A4 (ENSMMDG00005002814)	cfap20 (ENSMMDG00005002784)	dgat1a (ENSMMDG00005002759)	zgc:63863 (ENSMMDG00005002744)	SCRT1 (ENSMMDG00005002733)	ENSMMDG00005002714	RECQL4 (ENSMMDG00005002687)	cndp2 (ENSMMDG00005002406)	ENSMMDG00005002398	dus3l (ENSMMDG00005002348)	MTERF1 (ENSMMDG00005002342)	ENSMMDG00005002340 ##22	ENSMMDG00005002335 ##22	cyp51 (ENSMMDG00005002249)	krit1 (ENSMMDG00005002223)	rpz2 (ENSMMDG00005002213)	si:dkey-266f7.9 (ENSMMDG00005002211)	mrpl9 (ENSMMDG00005002209)	prcc (ENSMMDG00005002207)	HDGF (ENSMMDG00005002206)	mrpl24 (ENSMMDG00005002203)	mef2d (ENSMMDG00005002194)	tmem79a (ENSMMDG00005002190)	ENSMMDG00005002189	RPS19 (ENSMMDG00005002180)	ENSMMDG00005001978	ENSMMDG00005001960	ndufv1 (ENSMMDG00005001276)
Pinecone sodierfish	MODERN SPECIES	2	clptm1l (ENSMMDG00005003160)	rplp1 (ENSMMDG00005003107)	PTK2 (ENSMMDG00005003089)	DENND3 (ENSMMDG00005002895)	SLC45A4 (ENSMMDG00005002814)	cfap20 (ENSMMDG00005002784)	dgat1a (ENSMMDG00005002759)	zgc:63863 (ENSMMDG00005002744)	SCRT1 (ENSMMDG00005002733)	ENSMMDG00005002714	RECQL4 (ENSMMDG00005002687)	cndp2 (ENSMMDG00005002406)	ENSMMDG00005002398	dus3l (ENSMMDG00005002348)	MTERF1 (ENSMMDG00005002342)	ENSMMDG00005002340 ##22	ENSMMDG00005002335 ##22	cyp51 (ENSMMDG00005002249)	krit1 (ENSMMDG00005002223)	rpz2 (ENSMMDG00005002213)	si:dkey-266f7.9 (ENSMMDG00005002211)	mrpl9 (ENSMMDG00005002209)	prcc (ENSMMDG00005002207)	HDGF (ENSMMDG00005002206)	mrpl24 (ENSMMDG00005002203)	mef2d (ENSMMDG00005002194)	tmem79a (ENSMMDG00005002190)	ENSMMDG00005002189	RPS19 (ENSMMDG00005002180)	ENSMMDG00005001978	ENSMMDG00005001960
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a
Tiger tail seahorse	MODERN SPECIES	99	TRIL (ENSHCOG00000016402)	osbpl3a (ENSHCOG00000016386)	ENSHCOG00000016329	spag1a (ENSHCOG00000016309)	polr2k (ENSHCOG00000016287)	ENSHCOG00000016279	dgat1a (ENSHCOG00000016223)	zgc:63863 (ENSHCOG00000016208)	SCRT1 (ENSHCOG00000016179)	ENSHCOG00000016163	RECQL4 (ENSHCOG00000016157)	cndp2 (ENSHCOG00000016143)	ENSHCOG00000016129	dus3l (ENSHCOG00000016072)	MTERF1 (ENSHCOG00000016064)	ENSHCOG00000016056 ##22	cyp51 (ENSHCOG00000015902)	krit1 (ENSHCOG00000015896)	rpz2 (ENSHCOG00000000442)	si:dkey-266f7.9 (ENSHCOG00000015848)	PTK2 (ENSHCOG00000015835)	rplp1 (ENSHCOG00000015713)	clptm1l (ENSHCOG00000015698)	trps1 (ENSHCOG00000015687)	ENSHCOG00000015654	ENSHCOG00000015638	ENSHCOG00000015631	ENSHCOG00000015615	ENSHCOG00000015574	tshz1 (ENSHCOG00000015516)	DNAH17 (ENSHCOG00000015509)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000015199	ENSMAMG00000015260	ENSMAMG00000015281	ENSMAMG00000015327	cfap20 (ENSMAMG00000015366)	dgat1a (ENSMAMG00000015394)	zgc:63863 (ENSMAMG00000015459)	ENSMAMG00000015514	ENSMAMG00000015541	slc39a4 (ENSMAMG00000015561)	ENSMAMG00000015565	ENSMAMG00000015582	ENSMAMG00000015608	dus3l (ENSMAMG00000015637)	MTERF1 (ENSMAMG00000015682)	ENSMAMG00000015737 ##22	cyp51 (ENSMAMG00000015807)	KRIT1 (ENSMAMG00000015987)	ENSMAMG00000016058	ENSMAMG00000016072	ENSMAMG00000027872	ENSMAMG00000016085	PRCC (ENSMAMG00000016095)	ENSMAMG00000025205	MRPL24 (ENSMAMG00000028466)	ENSMAMG00000016131	ENSMAMG00000016197	ENSMAMG00000016215	ENSMAMG00000016304	ENSMAMG00000027787	ENSMAMG00000016335
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	2	ENSATEG00000011943	ENSATEG00000011899	cfap20 (ENSATEG00000030112)	ENSATEG00000026031	dgat1a (ENSATEG00000011833)	zgc:63863 (ENSATEG00000011715)	ENSATEG00000026499	ENSATEG00000011660	ENSATEG00000011645	ENSATEG00000011464	ENSATEG00000011189	ENSATEG00000011138	dus3l (ENSATEG00000011064)	MTERF1 (ENSATEG00000011055)	ENSATEG00000011024 ##22	ENSATEG00000010870 ##22	cyp51 (ENSATEG00000010813)	KRIT1 (ENSATEG00000010732)	ENSATEG00000010716	ENSATEG00000028202	ENSATEG00000025479	ENSATEG00000010534	ENSATEG00000010495	PRCC (ENSATEG00000025563)	ENSATEG00000029234	MRPL24 (ENSATEG00000010477)	ENSATEG00000010472	ENSATEG00000010406	ENSATEG00000010376	ENSATEG00000026875	ENSATEG00000010310
Climbing perch	MODERN SPECIES	2	DENND3 (ENSATEG00000012018)	ENSATEG00000011943	ENSATEG00000011899	cfap20 (ENSATEG00000030112)	ENSATEG00000026031	dgat1a (ENSATEG00000011833)	zgc:63863 (ENSATEG00000011715)	ENSATEG00000026499	ENSATEG00000011660	ENSATEG00000011645	ENSATEG00000011464	ENSATEG00000011189	ENSATEG00000011138	dus3l (ENSATEG00000011064)	MTERF1 (ENSATEG00000011055)	ENSATEG00000011024 ##22	ENSATEG00000010870 ##22	cyp51 (ENSATEG00000010813)	KRIT1 (ENSATEG00000010732)	ENSATEG00000010716	ENSATEG00000028202	ENSATEG00000025479	ENSATEG00000010534	ENSATEG00000010495	PRCC (ENSATEG00000025563)	ENSATEG00000029234	MRPL24 (ENSATEG00000010477)	ENSATEG00000010472	ENSATEG00000010406	ENSATEG00000010376	ENSATEG00000026875
Siamese fighting fish	MODERN SPECIES	2	dgat1a (ENSBSLG00000011772)	zgc:63863 (ENSBSLG00000012203)	SCRT1 (ENSBSLG00000013037)	ENSBSLG00000013078	slc39a4 (ENSBSLG00000013147)	ENSBSLG00000013118	RECQL4 (ENSBSLG00000013203)	cndp2 (ENSBSLG00000013395)	ENSBSLG00000013459	dus3l (ENSBSLG00000013508)	slc39a4 (ENSBSLG00000013723)	RECQL4 (ENSBSLG00000013737)	cndp2 (ENSBSLG00000013763)	ENSBSLG00000013771	MTERF1 (ENSBSLG00000013782)	ENSBSLG00000014088 ##22	cyp51 (ENSBSLG00000014294)	krit1 (ENSBSLG00000014397)	rpz2 (ENSBSLG00000014416)	si:dkey-266f7.9 (ENSBSLG00000014420)	ENSBSLG00000014428	mrpl9 (ENSBSLG00000014439)	prcc (ENSBSLG00000014447)	HDGF (ENSBSLG00000014652)	mrpl24 (ENSBSLG00000014676)	ENSBSLG00000014691	mef2d (ENSBSLG00000014742)	tmem79a (ENSBSLG00000014819)	ENSBSLG00000014824	ENSBSLG00000014849	ndufv1 (ENSBSLG00000014918)
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.e.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a.d	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	331	GPR20 (ENSLCAG00010003806)	cfap20 (ENSLCAG00010003811)	dgat1a (ENSLCAG00010003818)	zgc:63863 (ENSLCAG00010003829)	ENSLCAG00010003840	KLHL10 (ENSLCAG00010003844)	SCRT1 (ENSLCAG00010003847)	ENSLCAG00010003851	slc39a4 (ENSLCAG00010003862)	RECQL4 (ENSLCAG00010003901)	cndp2 (ENSLCAG00010004054)	ENSLCAG00010004242	dus3l (ENSLCAG00010004256)	MTERF1 (ENSLCAG00010004271)	ENSLCAG00010004284 ##22	ENSLCAG00010004300 ##22	cyp51 (ENSLCAG00010004316)	krit1 (ENSLCAG00010004472)	rpz2 (ENSLCAG00010004674)	si:dkey-266f7.9 (ENSLCAG00010004678)	mrpl9 (ENSLCAG00010004682)	prcc (ENSLCAG00010004686)	HDGF (ENSLCAG00010004687)	mrpl24 (ENSLCAG00010004691)	ENSLCAG00010004703	mef2d (ENSLCAG00010004729)
Barramundi perch	MODERN SPECIES	331	SLC45A4 (ENSLCAG00010003786)	GPR20 (ENSLCAG00010003806)	cfap20 (ENSLCAG00010003811)	dgat1a (ENSLCAG00010003818)	zgc:63863 (ENSLCAG00010003829)	ENSLCAG00010003840	KLHL10 (ENSLCAG00010003844)	SCRT1 (ENSLCAG00010003847)	ENSLCAG00010003851	slc39a4 (ENSLCAG00010003862)	RECQL4 (ENSLCAG00010003901)	cndp2 (ENSLCAG00010004054)	ENSLCAG00010004242	dus3l (ENSLCAG00010004256)	MTERF1 (ENSLCAG00010004271)	ENSLCAG00010004284 ##22	ENSLCAG00010004300 ##22	cyp51 (ENSLCAG00010004316)	krit1 (ENSLCAG00010004472)	rpz2 (ENSLCAG00010004674)	si:dkey-266f7.9 (ENSLCAG00010004678)	mrpl9 (ENSLCAG00010004682)	prcc (ENSLCAG00010004686)	HDGF (ENSLCAG00010004687)	mrpl24 (ENSLCAG00010004691)	ENSLCAG00010004703	mef2d (ENSLCAG00010004729)
Seriola	ANCESTRAL SPECIES	12	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.e.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a.d	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Yellowtail amberjack	MODERN SPECIES	2834									KLHL10 (ENSSLDG00000016475)	ENSSLDG00000016454	slc39a4 (ENSSLDG00000016439)	RECQL4 (ENSSLDG00000016407)	cndp2 (ENSSLDG00000016255)	ENSSLDG00000016174	dus3l (ENSSLDG00000016115)	ENSSLDG00000015913 ##22	cyp51 (ENSSLDG00000015791)	krit1 (ENSSLDG00000015718)	rpz2 (ENSSLDG00000015697)	si:dkey-266f7.9 (ENSSLDG00000015682)	mrpl9 (ENSSLDG00000015665)	prcc (ENSSLDG00000015646)	HDGF (ENSSLDG00000015635)	ENSSLDG00000015622	mrpl24 (ENSSLDG00000015607)	ENSSLDG00000015583	mef2d (ENSSLDG00000015496)	ENSSLDG00000015454	RPS19 (ENSSLDG00000015400)	ENSSLDG00000015432	ENSSLDG00000015348
Greater amberjack	MODERN SPECIES	48	DENND3 (ENSSDUG00000012929)	SLC45A4 (ENSSDUG00000013026)	GPR20 (ENSSDUG00000013098)	cfap20 (ENSSDUG00000013130)	dgat1a (ENSSDUG00000013146)	zgc:63863 (ENSSDUG00000013176)	ENSSDUG00000013189	KLHL10 (ENSSDUG00000013192)	SCRT1 (ENSSDUG00000013215)	slc39a4 (ENSSDUG00000013223)	RECQL4 (ENSSDUG00000013245)	cndp2 (ENSSDUG00000013309)	ENSSDUG00000013486	dus3l (ENSSDUG00000013517)	MTERF1 (ENSSDUG00000013580)	ENSSDUG00000013622 ##22	cyp51 (ENSSDUG00000014170)	krit1 (ENSSDUG00000014394)	rpz2 (ENSSDUG00000014419)	si:dkey-266f7.9 (ENSSDUG00000014422)	mrpl9 (ENSSDUG00000014433)	prcc (ENSSDUG00000014446)	HDGF (ENSSDUG00000014524)	ENSSDUG00000014536	mrpl24 (ENSSDUG00000014548)	ENSSDUG00000014564	ENSSDUG00000014617	mef2d (ENSSDUG00000014641)	tmem79a (ENSSDUG00000014747)	ENSSDUG00000014755	RPS19 (ENSSDUG00000014770)
Pleuronectoidei	ANCESTRAL SPECIES	54																ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a
Turbot	MODERN SPECIES	14	ENSSMAG00000005698	DENND3 (ENSSMAG00000005636)	ENSSMAG00000005307	ENSSMAG00000005278	cfap20 (ENSSMAG00000031899)	dgat1a (ENSSMAG00000005178)	ENSSMAG00000026994	zgc:63863 (ENSSMAG00000005137)	ENSSMAG00000005041	ENSSMAG00000005002	ENSSMAG00000004982	ENSSMAG00000004943	ENSSMAG00000004934	ENSSMAG00000004896	ENSSMAG00000004888	ENSSMAG00000004854 ##22	ENSSMAG00000004460	ENSSMAG00000004455	ENSSMAG00000035846	ENSSMAG00000004427	ENSSMAG00000004399	PRCC (ENSSMAG00000004383)	ENSSMAG00000004372	MRPL24 (ENSSMAG00000026141)	ENSSMAG00000004294	ENSSMAG00000004153	ENSSMAG00000004131	ENSSMAG00000027888	ENSSMAG00000036293	ENSSMAG00000026760	ENSSMAG00000004085
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	9	s100u (ENSCSEG00000007382)	s100s (ENSCSEG00000007377)	SHE (ENSCSEG00000007372)	pygo2 (ENSCSEG00000007361)	cgnb (ENSCSEG00000007335)	ENSCSEG00000007311	C1orf43 (ENSCSEG00000007289)	ubap2l (ENSCSEG00000007266)	hax1 (ENSCSEG00000007258)	aqp10b (ENSCSEG00000007250)	znf687b (ENSCSEG00000007216)	psmd4a (ENSCSEG00000007157)	PIP5K1A (ENSCSEG00000007140)	ENSCSEG00000007135	ENSCSEG00000007128	ENSCSEG00000007119 ##22	ENSCSEG00000007110 ##22	cyp51 (ENSCSEG00000007021)	krit1 (ENSCSEG00000006989)	rpz2 (ENSCSEG00000006984)	si:dkey-266f7.9 (ENSCSEG00000006976)	ENSCSEG00000006971	mrpl9 (ENSCSEG00000006967)	prcc (ENSCSEG00000006958)	ENSCSEG00000006951	HDGF (ENSCSEG00000006941)	mrpl24 (ENSCSEG00000006937)	ENSCSEG00000006919	ENSCSEG00000006749	mef2d (ENSCSEG00000006700)	ENSCSEG00000006687
Tongue sole	MODERN SPECIES	9	s100s (ENSCSEG00000007377)	SHE (ENSCSEG00000007372)	pygo2 (ENSCSEG00000007361)	cgnb (ENSCSEG00000007335)	ENSCSEG00000007311	C1orf43 (ENSCSEG00000007289)	ubap2l (ENSCSEG00000007266)	hax1 (ENSCSEG00000007258)	aqp10b (ENSCSEG00000007250)	znf687b (ENSCSEG00000007216)	psmd4a (ENSCSEG00000007157)	PIP5K1A (ENSCSEG00000007140)	ENSCSEG00000007135	ENSCSEG00000007128	ENSCSEG00000007119 ##22	ENSCSEG00000007110 ##22	cyp51 (ENSCSEG00000007021)	krit1 (ENSCSEG00000006989)	rpz2 (ENSCSEG00000006984)	si:dkey-266f7.9 (ENSCSEG00000006976)	ENSCSEG00000006971	mrpl9 (ENSCSEG00000006967)	prcc (ENSCSEG00000006958)	ENSCSEG00000006951	HDGF (ENSCSEG00000006941)	mrpl24 (ENSCSEG00000006937)	ENSCSEG00000006919	ENSCSEG00000006749	mef2d (ENSCSEG00000006700)	ENSCSEG00000006687	trnau1apa (ENSCSEG00000006663)
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Tetraodontidae	ANCESTRAL SPECIES	69						ENSGT00390000004554.ab	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000156500	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a	ENSGT00390000010641.i.b
Fugu	MODERN SPECIES	3	mrps21 (ENSTRUG00000022345)	rprd2a (ENSTRUG00000012016)	celf3a (ENSTRUG00000012064)	cers2a (ENSTRUG00000012292)	cfap20 (ENSTRUG00000026308)	dgat1a (ENSTRUG00000012581)	zgc:63863 (ENSTRUG00000012626)	ENSTRUG00000031799	SCRT1 (ENSTRUG00000012719)	ENSTRUG00000012739	ENSTRUG00000026302	cndp2 (ENSTRUG00000012921)	ENSTRUG00000027682	MTERF1 (ENSTRUG00000030432)	ENSTRUG00000025255 ##22	ENSTRUG00000022386 ##22	krit1 (ENSTRUG00000013413)	rpz2 (ENSTRUG00000021627)	si:dkey-266f7.9 (ENSTRUG00000019794)	mrpl9 (ENSTRUG00000031887)	prcc (ENSTRUG00000013509)	ENSTRUG00000020123	mrpl24 (ENSTRUG00000013588)	ENSTRUG00000013629	mef2d (ENSTRUG00000013784)	ENSTRUG00000020056	ENSTRUG00000031020	ENSTRUG00000013950	ENSTRUG00000013996	ENSTRUG00000021889	ndufv1 (ENSTRUG00000029809)
Tetraodon	MODERN SPECIES	16	ash1l (ENSTNIG00000017550)	ENSTNIG00000000111	scamp3 (ENSTNIG00000017549)	crabp2b (ENSTNIG00000017548)	ENSTNIG00000017547	celf3a (ENSTNIG00000017546)	cers2a (ENSTNIG00000017545)	cfap20 (ENSTNIG00000017544)	dgat1a (ENSTNIG00000017543)	zgc:63863 (ENSTNIG00000017542)	ENSTNIG00000017541	SLC39A4 (ENSTNIG00000017540)	RECQL4 (ENSTNIG00000017539)	cndp2 (ENSTNIG00000017538)	dus3l (ENSTNIG00000017537)	ENSTNIG00000017536 ##22	cyp51 (ENSTNIG00000017535)	krit1 (ENSTNIG00000017534)	si:dkey-266f7.9 (ENSTNIG00000017533)	mrpl9 (ENSTNIG00000017532)	prcc (ENSTNIG00000017531)	ENSTNIG00000017530	mrpl24 (ENSTNIG00000017529)	BCAN (ENSTNIG00000017528)	mef2d (ENSTNIG00000017527)	ENSTNIG00000017526	ENSTNIG00000017525	gatad1 (ENSTNIG00000017797)	chrac1 (ENSTNIG00000017796)	pip4p2 (ENSTNIG00000017795)	necab1 (ENSTNIG00000017794)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Ballan wrasse	MODERN SPECIES	687											ENSLBEG00000015992	ENSLBEG00000015941	RECQL4 (ENSLBEG00000015884)	cndp2 (ENSLBEG00000015839)	dus3l (ENSLBEG00000015795)	ENSLBEG00000015752 ##22	ENSLBEG00000015731
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	484	SLC45A4 (ENSLCRG00005004535)	ENSLCRG00005004532	cfap20 (ENSLCRG00005004526)	dgat1a (ENSLCRG00005003023)	zgc:63863 (ENSLCRG00005007533)	KLHL10 (ENSLCRG00005007530)	SCRT1 (ENSLCRG00005007526)	ENSLCRG00005007524	ENSLCRG00005007521	ENSLCRG00005007495	cndp2 (ENSLCRG00005007336)	ENSLCRG00005007332	dus3l (ENSLCRG00005007104)	MTERF1 (ENSLCRG00005007098)	ENSLCRG00005007095 ##22	ENSLCRG00005007092 ##22	krit1 (ENSLCRG00005006627)	rpz2 (ENSLCRG00005006617)	si:dkey-266f7.9 (ENSLCRG00005006616)	ENSLCRG00005006615	mrpl9 (ENSLCRG00005006613)	prcc (ENSLCRG00005006612)	HDGF (ENSLCRG00005006610)	mrpl24 (ENSLCRG00005006609)	ENSLCRG00005006608	mef2d (ENSLCRG00005006577)	tmem79a (ENSLCRG00005006574)	ENSLCRG00005006573	RPS19 (ENSLCRG00005006528)	ENSLCRG00005006526	ENSLCRG00005006524
Large yellow croaker	MODERN SPECIES	484	DENND3 (ENSLCRG00005004563)	SLC45A4 (ENSLCRG00005004535)	ENSLCRG00005004532	cfap20 (ENSLCRG00005004526)	dgat1a (ENSLCRG00005003023)	zgc:63863 (ENSLCRG00005007533)	KLHL10 (ENSLCRG00005007530)	SCRT1 (ENSLCRG00005007526)	ENSLCRG00005007524	ENSLCRG00005007521	ENSLCRG00005007495	cndp2 (ENSLCRG00005007336)	ENSLCRG00005007332	dus3l (ENSLCRG00005007104)	MTERF1 (ENSLCRG00005007098)	ENSLCRG00005007095 ##22	ENSLCRG00005007092 ##22	krit1 (ENSLCRG00005006627)	rpz2 (ENSLCRG00005006617)	si:dkey-266f7.9 (ENSLCRG00005006616)	ENSLCRG00005006615	mrpl9 (ENSLCRG00005006613)	prcc (ENSLCRG00005006612)	HDGF (ENSLCRG00005006610)	mrpl24 (ENSLCRG00005006609)	ENSLCRG00005006608	mef2d (ENSLCRG00005006577)	tmem79a (ENSLCRG00005006574)	ENSLCRG00005006573	RPS19 (ENSLCRG00005006528)	ENSLCRG00005006526
European seabass	MODERN SPECIES	22	ENSDLAG00005009543	ENSDLAG00005009634	ENSDLAG00005010225	ENSDLAG00005010272	ENSDLAG00005010275	cfap20 (ENSDLAG00005010284)	dgat1a (ENSDLAG00005010300)	zgc:63863 (ENSDLAG00005027179)	ENSDLAG00005010627	ENSDLAG00005010689	ENSDLAG00005010700	ENSDLAG00005010708	ENSDLAG00005011330	ENSDLAG00005030960	dus3l (ENSDLAG00005011491)	ENSDLAG00005011838 ##22	cyp51 (ENSDLAG00005011976)	ENSDLAG00005012066	ENSDLAG00005012111	ENSDLAG00005034544	ENSDLAG00005028941	PRCC (ENSDLAG00005034816)	ENSDLAG00005032519	MRPL24 (ENSDLAG00005029464)	ENSDLAG00005012159	ENSDLAG00005012278	ENSDLAG00005031202	ENSDLAG00005029889	ENSDLAG00005012352	ENSDLAG00005012480	ENSDLAG00005013247
Gilthead seabream	MODERN SPECIES	17	rplp1 (ENSSAUG00010016580)	PTK2 (ENSSAUG00010014341)	DENND3 (ENSSAUG00010014304)	SLC45A4 (ENSSAUG00010014300)	GPR20 (ENSSAUG00010014299)	cfap20 (ENSSAUG00010014298)	dgat1a (ENSSAUG00010014280)	zgc:63863 (ENSSAUG00010014277)	SCRT1 (ENSSAUG00010014276)	ENSSAUG00010014275	ENSSAUG00010014274	ENSSAUG00010014271	cndp2 (ENSSAUG00010013976)	ENSSAUG00010013955	dus3l (ENSSAUG00010013314)	ENSSAUG00010013300 ##22	cyp51 (ENSSAUG00010013151)	krit1 (ENSSAUG00010013145)	rpz2 (ENSSAUG00010013141)	si:dkey-266f7.9 (ENSSAUG00010013139)	ENSSAUG00010013138	mrpl9 (ENSSAUG00010013137)	prcc (ENSSAUG00010013136)	HDGF (ENSSAUG00010013131)	mrpl24 (ENSSAUG00010013129)	ENSSAUG00010013128	mef2d (ENSSAUG00010013092)	ENSSAUG00010013085	ENSSAUG00010013083	RPS19 (ENSSAUG00010013077)	ENSSAUG00010013074
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00530000063461.A.b	ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000156500	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a
Lumpfish	MODERN SPECIES	2	clptm1l (ENSCLMG00005002245)	rplp1 (ENSCLMG00005002236)	drc1 (ENSCLMG00005002232)	PTK2 (ENSCLMG00005002160)	SLC45A4 (ENSCLMG00005002146)	GPR20 (ENSCLMG00005002145)	cfap20 (ENSCLMG00005002144)	dgat1a (ENSCLMG00005002143)	zgc:63863 (ENSCLMG00005002142)	SCRT1 (ENSCLMG00005002141)	ENSCLMG00005002140	ENSCLMG00005002139	cndp2 (ENSCLMG00005002128)	dus3l (ENSCLMG00005001799)	MTERF1 (ENSCLMG00005001788)	ENSCLMG00005001757 ##22	cyp51 (ENSCLMG00005001706)	krit1 (ENSCLMG00005001596)	rpz2 (ENSCLMG00005001575)	si:dkey-266f7.9 (ENSCLMG00005001567)	ENSCLMG00005001557	mrpl9 (ENSCLMG00005001551)	prcc (ENSCLMG00005001541)	HDGF (ENSCLMG00005001525)	mrpl24 (ENSCLMG00005001512)	ENSCLMG00005001479	MEF2D (ENSCLMG00005001429)	ENSCLMG00005001401	ENSCLMG00005001321	ENSCLMG00005001300	ENSCLMG00005001286
Stickleback	MODERN SPECIES	9	trps1 (ENSGACG00000003970)	clptm1l (ENSGACG00000003981)	rplp1 (ENSGACG00000003995)	ENSGACG00000004003	PTK2 (ENSGACG00000004011)	DENND3 (ENSGACG00000004021)	SLC45A4 (ENSGACG00000004032)	ENSGACG00000004037	cfap20 (ENSGACG00000004039)	dgat1a (ENSGACG00000004051)	zgc:63863 (ENSGACG00000004066)	SCRT1 (ENSGACG00000004072)	ENSGACG00000004076	cndp2 (ENSGACG00000004084)	dus3l (ENSGACG00000004109)	ENSGACG00000004143 ##22	cyp51 (ENSGACG00000004161)	krit1 (ENSGACG00000004168)	si:dkey-266f7.9 (ENSGACG00000004184)	mrpl9 (ENSGACG00000004192)	prcc (ENSGACG00000004195)	ENSGACG00000004199	mrpl24 (ENSGACG00000004206)	BCAN (ENSGACG00000004219)	mef2d (ENSGACG00000004227)	tmem79a (ENSGACG00000004231)	ENSGACG00000004235	ENSGACG00000004236	ENSGACG00000004248	ENSGACG00000004267	ndufv1 (ENSGACG00000004271)
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a
Pike perch	MODERN SPECIES	13	DENND3 (ENSSLUG00000000799)	SLC45A4 (ENSSLUG00000000775)	ENSSLUG00000000766	cfap20 (ENSSLUG00000000762)	dgat1a (ENSSLUG00000000703)	zgc:63863 (ENSSLUG00000000669)	KLHL10 (ENSSLUG00000000646)	SCRT1 (ENSSLUG00000000637)	ENSSLUG00000000632	RECQL4 (ENSSLUG00000000620)	cndp2 (ENSSLUG00000000375)	ENSSLUG00000000253	dus3l (ENSSLUG00000000227)	ENSSLUG00000000202	MTERF1 (ENSSLUG00000000198)	ENSSLUG00000000181 ##22	cyp51 (ENSSLUG00000000159)	krit1 (ENSSLUG00000000135)	rpz2 (ENSSLUG00000000119)	si:dkey-266f7.9 (ENSSLUG00000000112)	mrpl9 (ENSSLUG00000000108)	prcc (ENSSLUG00000013331)	ENSSLUG00000013326	mrpl24 (ENSSLUG00000013318)	ENSSLUG00000013308	mef2d (ENSSLUG00000013297)	ENSSLUG00000013287	ENSSLUG00000013279	ENSSLUG00000013272	ENSSLUG00000013265	ndufv1 (ENSSLUG00000013201)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	2	DENND3 (ENSCGOG00000013831)	SLC45A4 (ENSCGOG00000013897)	GPR20 (ENSCGOG00000013911)	cfap20 (ENSCGOG00000013912)	dgat1a (ENSCGOG00000013924)	zgc:63863 (ENSCGOG00000014085)	KLHL10 (ENSCGOG00000014089)	SCRT1 (ENSCGOG00000014105)	ENSCGOG00000014107	RECQL4 (ENSCGOG00000001283)	ENSCGOG00000001340	cndp2 (ENSCGOG00000001355)	ENSCGOG00000001548	dus3l (ENSCGOG00000001553)	MTERF1 (ENSCGOG00000001566)	ENSCGOG00000001567 ##22	ENSCGOG00000001570 ##22	cyp51 (ENSCGOG00000001577)	krit1 (ENSCGOG00000001842)	rpz2 (ENSCGOG00000002092)	si:dkey-266f7.9 (ENSCGOG00000002093)	ENSCGOG00000002096	ENSCGOG00000002099	prcc (ENSCGOG00000002100)	RNF5 (ENSCGOG00000002102)	slc44a4 (ENSCGOG00000002109)	ehmt2 (ENSCGOG00000002267)	zbtb12.2 (ENSCGOG00000005417)	nelfe (ENSCGOG00000005425)	skic2 (ENSCGOG00000005492)	ENSCGOG00000006118
Channel bull blenny	MODERN SPECIES	2	SLC45A4 (ENSCGOG00000013897)	GPR20 (ENSCGOG00000013911)	cfap20 (ENSCGOG00000013912)	dgat1a (ENSCGOG00000013924)	zgc:63863 (ENSCGOG00000014085)	KLHL10 (ENSCGOG00000014089)	SCRT1 (ENSCGOG00000014105)	ENSCGOG00000014107	RECQL4 (ENSCGOG00000001283)	ENSCGOG00000001340	cndp2 (ENSCGOG00000001355)	ENSCGOG00000001548	dus3l (ENSCGOG00000001553)	MTERF1 (ENSCGOG00000001566)	ENSCGOG00000001567 ##22	ENSCGOG00000001570 ##22	cyp51 (ENSCGOG00000001577)	krit1 (ENSCGOG00000001842)	rpz2 (ENSCGOG00000002092)	si:dkey-266f7.9 (ENSCGOG00000002093)	ENSCGOG00000002096	ENSCGOG00000002099	prcc (ENSCGOG00000002100)	RNF5 (ENSCGOG00000002102)	slc44a4 (ENSCGOG00000002109)	ehmt2 (ENSCGOG00000002267)	zbtb12.2 (ENSCGOG00000005417)	nelfe (ENSCGOG00000005425)	skic2 (ENSCGOG00000005492)	ENSCGOG00000006118	ENSCGOG00000006119
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000180237	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Pomacentridae_A	ANCESTRAL SPECIES	99	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554.q	ENSGT00390000004554.r	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c.j	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000180237	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Amphiprion	ANCESTRAL SPECIES	91	ENSGT00730000111747.b	ENSGT00940000154172.a	ENSGT00940000168219	ENSGT00940000166691.h	ENSGT00940000159107.i	ENSGT00530000063948.a	ENSGT00940000154489.B.a	ENSGT00950000183065.B.f	ENSGT00510000047366.b	ENSGT00390000003453.b.b	ENSGT00390000018324	ENSGT00940000164368.A	ENSGT00940000156524.a	ENSGT00530000064050.a	ENSGT00940000171101	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000180237	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Clown anemonefish	MODERN SPECIES	3642												ift74 (ENSAOCG00000021875)	znf687b (ENSAOCG00000021824)	psmd4a (ENSAOCG00000021788)	pip5k1aa (ENSAOCG00000021727)	ENSAOCG00000021593 ##22	cyp51 (ENSAOCG00000020923)	krit1 (ENSAOCG00000020867)	rpz2 (ENSAOCG00000020787)	si:dkey-266f7.9 (ENSAOCG00000020782)	mrpl9 (ENSAOCG00000020766)	prcc (ENSAOCG00000001531)	HDGF (ENSAOCG00000001527)	mrpl24 (ENSAOCG00000020676)	ENSAOCG00000001526	mef2d (ENSAOCG00000020638)
Orange clownfish	MODERN SPECIES	8	ENSAPEG00000008283	ENSAPEG00000008275	s100u (ENSAPEG00000008267)	s100s (ENSAPEG00000008197)	SHE (ENSAPEG00000008188)	pygo2 (ENSAPEG00000008185)	cgnb (ENSAPEG00000008164)	ENSAPEG00000008142	C1orf43 (ENSAPEG00000008101)	ubap2l (ENSAPEG00000008041)	hax1 (ENSAPEG00000008010)	aqp10b (ENSAPEG00000008000)	znf687b (ENSAPEG00000007954)	psmd4a (ENSAPEG00000007908)	pip5k1aa (ENSAPEG00000007852)	ENSAPEG00000007778 ##22	cyp51 (ENSAPEG00000007764)	krit1 (ENSAPEG00000007698)	rpz2 (ENSAPEG00000007687)	si:dkey-266f7.9 (ENSAPEG00000007676)	mrpl9 (ENSAPEG00000007650)	prcc (ENSAPEG00000007636)	HDGF (ENSAPEG00000007615)	mrpl24 (ENSAPEG00000007569)	ENSAPEG00000007412	mef2d (ENSAPEG00000007314)	ENSAPEG00000007273	ENSAPEG00000007224	RPS19 (ENSAPEG00000007172)	ENSAPEG00000006103	ENSAPEG00000005977
Spiny chromis	MODERN SPECIES	758															MTERF1 (ENSAPOG00000022230)	ENSAPOG00000022199 ##22	cyp51 (ENSAPOG00000022042)	krit1 (ENSAPOG00000021996)	rpz2 (ENSAPOG00000021933)	si:dkey-266f7.9 (ENSAPOG00000021927)	mrpl9 (ENSAPOG00000000834)	prcc (ENSAPOG00000021884)	HDGF (ENSAPOG00000021871)	mrpl24 (ENSAPOG00000021855)	ENSAPOG00000021828	mef2d (ENSAPOG00000021774)
Bicolor damselfish	MODERN SPECIES	918														dus3l (ENSSPAG00000018660)	MTERF1 (ENSSPAG00000018734)	ENSSPAG00000018773 ##22	cyp51 (ENSSPAG00000019069)	krit1 (ENSSPAG00000019108)	rpz2 (ENSSPAG00000019166)	si:dkey-266f7.9 (ENSSPAG00000019175)	mrpl9 (ENSSPAG00000019185)	prcc (ENSSPAG00000019202)	HDGF (ENSSPAG00000019218)	mrpl24 (ENSSPAG00000019224)	ENSSPAG00000019273	mef2d (ENSSPAG00000019504)	tmem79a (ENSSPAG00000019575)	ENSSPAG00000019587	ENSSPAG00000019604
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c.e	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.h.b	ENSGT00940000156500.h.a	ENSGT00940000156500.g	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c.e	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.h.a	ENSGT00940000156500.g	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	302	ENSNBRG00000014525	ENSNBRG00000014566	SLC45A4 (ENSNBRG00000014628)	GPR20 (ENSNBRG00000014662)	cfap20 (ENSNBRG00000014678)	dgat1a (ENSNBRG00000014736)	zgc:63863 (ENSNBRG00000014838)	KLHL10 (ENSNBRG00000014863)	SCRT1 (ENSNBRG00000014882)	ENSNBRG00000014895	slc39a4 (ENSNBRG00000014915)	cndp2 (ENSNBRG00000014933)	ENSNBRG00000014962	ENSNBRG00000014968	dus3l (ENSNBRG00000015011)	ENSNBRG00000015055 ##22	ENSNBRG00000015077 ##22	cyp51 (ENSNBRG00000015178)	krit1 (ENSNBRG00000015215)	si:dkey-266f7.9 (ENSNBRG00000015259)	mrpl9 (ENSNBRG00000015276)	prcc (ENSNBRG00000015303)	ENSNBRG00000015365	ENSNBRG00000015386	mef2d (ENSNBRG00000015507)	ENSNBRG00000015530	ENSNBRG00000015538	RPS19 (ENSNBRG00000015559)	ENSNBRG00000015569	ENSNBRG00000015581	ndufv1 (ENSNBRG00000015594)
Lyretail cichlid	MODERN SPECIES	302	ENSNBRG00000014566	SLC45A4 (ENSNBRG00000014628)	GPR20 (ENSNBRG00000014662)	cfap20 (ENSNBRG00000014678)	dgat1a (ENSNBRG00000014736)	zgc:63863 (ENSNBRG00000014838)	KLHL10 (ENSNBRG00000014863)	SCRT1 (ENSNBRG00000014882)	ENSNBRG00000014895	slc39a4 (ENSNBRG00000014915)	cndp2 (ENSNBRG00000014933)	ENSNBRG00000014962	ENSNBRG00000014968	dus3l (ENSNBRG00000015011)	ENSNBRG00000015055 ##22	ENSNBRG00000015077 ##22	cyp51 (ENSNBRG00000015178)	krit1 (ENSNBRG00000015215)	si:dkey-266f7.9 (ENSNBRG00000015259)	mrpl9 (ENSNBRG00000015276)	prcc (ENSNBRG00000015303)	ENSNBRG00000015365	ENSNBRG00000015386	mef2d (ENSNBRG00000015507)	ENSNBRG00000015530	ENSNBRG00000015538	RPS19 (ENSNBRG00000015559)	ENSNBRG00000015569	ENSNBRG00000015581	ndufv1 (ENSNBRG00000015594)	ENSNBRG00000015606
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c.e	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.h.a.a	ENSGT00940000156500.h.b	ENSGT00940000156500.h.a.b.a.a	ENSGT00940000156500.g	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	MODERN SPECIES	357												ENSHBUG00000022294	ENSHBUG00000022271	dus3l (ENSHBUG00000022232)	MTERF1 (ENSHBUG00000022218)	ENSHBUG00000022204 ##22	ENSHBUG00000022152 ##22	cyp51 (ENSHBUG00000021964)	krit1 (ENSHBUG00000021657)	rpz2 (ENSHBUG00000000669)	si:dkey-266f7.9 (ENSHBUG00000021607)	ENSHBUG00000021576	mrpl9 (ENSHBUG00000021568)	prcc (ENSHBUG00000000809)	HDGF (ENSHBUG00000021552)	ENSHBUG00000021524	mef2d (ENSHBUG00000021492)	ENSHBUG00000021391	ENSHBUG00000021381	RPS19 (ENSHBUG00000021364)	ENSHBUG00000021336
Burton s mouthbrooder	MODERN SPECIES	357											ENSHBUG00000022294	ENSHBUG00000022271	dus3l (ENSHBUG00000022232)	MTERF1 (ENSHBUG00000022218)	ENSHBUG00000022204 ##22	ENSHBUG00000022152 ##22	cyp51 (ENSHBUG00000021964)	krit1 (ENSHBUG00000021657)	rpz2 (ENSHBUG00000000669)	si:dkey-266f7.9 (ENSHBUG00000021607)	ENSHBUG00000021576	mrpl9 (ENSHBUG00000021568)	prcc (ENSHBUG00000000809)	HDGF (ENSHBUG00000021552)	ENSHBUG00000021524	mef2d (ENSHBUG00000021492)	ENSHBUG00000021391	ENSHBUG00000021381	RPS19 (ENSHBUG00000021364)	ENSHBUG00000021336	ENSHBUG00000021231
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c.e.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.h.a.a	ENSGT00940000156500.h.a.b.a.b.b	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.b	ENSGT00940000156500.h.a.b.a.a	ENSGT00940000156500.g	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	397	DENND3 (ENSPNYG00000008490)	SLC45A4 (ENSPNYG00000008580)	ENSPNYG00000008599	cfap20 (ENSPNYG00000008620)	dgat1a (ENSPNYG00000008671)	zgc:63863 (ENSPNYG00000008848)	SCRT1 (ENSPNYG00000008865)	ENSPNYG00000008881	slc39a4 (ENSPNYG00000008901)	RECQL4 (ENSPNYG00000008927)	cndp2 (ENSPNYG00000008985)	ENSPNYG00000009009	dus3l (ENSPNYG00000009052)	MTERF1 (ENSPNYG00000009120)	ENSPNYG00000009128 ##22	ENSPNYG00000009166 ##22	cyp51 (ENSPNYG00000009266)	krit1 (ENSPNYG00000009295)	rpz2 (ENSPNYG00000009356)	si:dkey-266f7.9 (ENSPNYG00000009370)	mrpl9 (ENSPNYG00000009390)	prcc (ENSPNYG00000009406)	ENSPNYG00000009424	mrpl24 (ENSPNYG00000009437)	ENSPNYG00000009488	mef2d (ENSPNYG00000009684)	ENSPNYG00000009733	ENSPNYG00000009742	RPS19 (ENSPNYG00000009770)	ENSPNYG00000009795	ENSPNYG00000009815
P. nyererei	MODERN SPECIES	397		DENND3 (ENSPNYG00000008490)	SLC45A4 (ENSPNYG00000008580)	ENSPNYG00000008599	cfap20 (ENSPNYG00000008620)	dgat1a (ENSPNYG00000008671)	zgc:63863 (ENSPNYG00000008848)	SCRT1 (ENSPNYG00000008865)	ENSPNYG00000008881	slc39a4 (ENSPNYG00000008901)	RECQL4 (ENSPNYG00000008927)	cndp2 (ENSPNYG00000008985)	ENSPNYG00000009009	dus3l (ENSPNYG00000009052)	MTERF1 (ENSPNYG00000009120)	ENSPNYG00000009128 ##22	ENSPNYG00000009166 ##22	cyp51 (ENSPNYG00000009266)	krit1 (ENSPNYG00000009295)	rpz2 (ENSPNYG00000009356)	si:dkey-266f7.9 (ENSPNYG00000009370)	mrpl9 (ENSPNYG00000009390)	prcc (ENSPNYG00000009406)	ENSPNYG00000009424	mrpl24 (ENSPNYG00000009437)	ENSPNYG00000009488	mef2d (ENSPNYG00000009684)	ENSPNYG00000009733	ENSPNYG00000009742	RPS19 (ENSPNYG00000009770)	ENSPNYG00000009795
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c.e.c.a.a	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.h.a.a	ENSGT01100000263483.E.a.c.a.b.a.b	ENSGT00940000156500.h.b	ENSGT00940000156500.h.a.b.a.a	ENSGT00940000156500.g	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Eastern happy	MODERN SPECIES	13	dgat1a (ENSACLG00000012220)	zgc:63863 (ENSACLG00000012165)	KLHL10 (ENSACLG00000012119)	KLHL10 (ENSACLG00000012065)	SCRT1 (ENSACLG00000012046)	ENSACLG00000012028	ENSACLG00000011982	cndp2 (ENSACLG00000011810)	ENSACLG00000011804	cndp2 (ENSACLG00000011770)	cndp2 (ENSACLG00000011738)	cndp2 (ENSACLG00000011631)	ENSACLG00000011617	dus3l (ENSACLG00000011576)	MTERF1 (ENSACLG00000011571)	ENSACLG00000011385 ##22	cyp51 (ENSACLG00000011052)	krit1 (ENSACLG00000010998)	rpz2 (ENSACLG00000010988)	si:dkey-266f7.9 (ENSACLG00000010962)	ENSACLG00000010934	mrpl9 (ENSACLG00000010920)	prcc (ENSACLG00000010880)	HDGF (ENSACLG00000010863)	mrpl24 (ENSACLG00000010827)	ENSACLG00000010771	s100s (ENSACLG00000010756)	s100u (ENSACLG00000010572)	ENSACLG00000010564	ENSACLG00000010538	cks1b (ENSACLG00000010526)
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1104	zgc:63863 (ENSMZEG00005026705)	KLHL10 (ENSMZEG00005026704)	KLHL10 (ENSMZEG00005026703)	ENSMZEG00005026702	ENSMZEG00005026701	RECQL4 (ENSMZEG00005026699)	cndp2 (ENSMZEG00005026696)	ENSMZEG00005026691	cndp2 (ENSMZEG00005026679)	cndp2 (ENSMZEG00005026671)	ENSMZEG00005026670	cndp2 (ENSMZEG00005026666)	ENSMZEG00005026664	dus3l (ENSMZEG00005026661)	MTERF1 (ENSMZEG00005026659)	ENSMZEG00005026656 ##22	ENSMZEG00005026646 ##22	cyp51 (ENSMZEG00005026642)	krit1 (ENSMZEG00005026640)	rpz2 (ENSMZEG00005026638)	si:dkey-266f7.9 (ENSMZEG00005026636)	ENSMZEG00005026634	mrpl9 (ENSMZEG00005026632)	prcc (ENSMZEG00005026630)	HDGF (ENSMZEG00005026627)	mrpl24 (ENSMZEG00005026624)	ENSMZEG00005026622	mef2d (ENSMZEG00005026614)	ENSMZEG00005026611	ENSMZEG00005026609	RPS19 (ENSMZEG00005026604)
Zebra mbuna	MODERN SPECIES	1104	KLHL10 (ENSMZEG00005026704)	KLHL10 (ENSMZEG00005026703)	ENSMZEG00005026702	ENSMZEG00005026701	RECQL4 (ENSMZEG00005026699)	cndp2 (ENSMZEG00005026696)	ENSMZEG00005026691	cndp2 (ENSMZEG00005026679)	cndp2 (ENSMZEG00005026671)	ENSMZEG00005026670	cndp2 (ENSMZEG00005026666)	ENSMZEG00005026664	dus3l (ENSMZEG00005026661)	MTERF1 (ENSMZEG00005026659)	ENSMZEG00005026656 ##22	ENSMZEG00005026646 ##22	cyp51 (ENSMZEG00005026642)	krit1 (ENSMZEG00005026640)	rpz2 (ENSMZEG00005026638)	si:dkey-266f7.9 (ENSMZEG00005026636)	ENSMZEG00005026634	mrpl9 (ENSMZEG00005026632)	prcc (ENSMZEG00005026630)	HDGF (ENSMZEG00005026627)	mrpl24 (ENSMZEG00005026624)	ENSMZEG00005026622	mef2d (ENSMZEG00005026614)	ENSMZEG00005026611	ENSMZEG00005026609	RPS19 (ENSMZEG00005026604)	ENSMZEG00005026602
Nile tilapia	MODERN SPECIES	13	zgc:63863 (ENSONIG00000002857)	ENSONIG00000038713	ENSONIG00000030309	ENSONIG00000042862	ENSONIG00000037409	SCRT1 (ENSONIG00000019809)	ENSONIG00000031414	ENSONIG00000019806	RECQL4 (ENSONIG00000019801)	cndp2 (ENSONIG00000036243)	cndp2 (ENSONIG00000034035)	cndp2 (ENSONIG00000019796)	ENSONIG00000041402	dus3l (ENSONIG00000019793)	MTERF1 (ENSONIG00000019792)	ENSONIG00000019787 ##22	cyp51 (ENSONIG00000019785)	krit1 (ENSONIG00000019783)	rpz2 (ENSONIG00000020796)	si:dkey-266f7.9 (ENSONIG00000019781)	ENSONIG00000043075	mrpl9 (ENSONIG00000030963)	prcc (ENSONIG00000033561)	ENSONIG00000031957	ENSONIG00000028554	mrpl24 (ENSONIG00000019772)	ENSONIG00000019771	mef2d (ENSONIG00000019767)	ENSONIG00000019766	ENSONIG00000040681	RPS19 (ENSONIG00000019765)
Midas cichlid	MODERN SPECIES	1031																ENSACIG00000002913 ##22
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Oryzias	ANCESTRAL SPECIES	24	ENSGT00530000063461.A.b	ENSGT00940000178701	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b
Oryzias_a	ANCESTRAL SPECIES	64		ENSGT00940000178701	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554.u.a	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b
Chinese medaka	MODERN SPECIES	4750																ENSOSIG00000002495 ##22
Japanese Medaka HdrR	DUPLICATION
Japanese Medaka HdrR	MODERN SPECIES	2	SLC45A4 (ENSORLG00000026476)	ENSORLG00000023702	GPR20 (ENSORLG00000022557)	cfap20 (ENSORLG00000024355)	dgat1a (ENSORLG00000019263)	ENSORLG00000027147	ENSORLG00000026428	zgc:63863 (ENSORLG00000019247)	SCRT1 (ENSORLG00000022825)	RECQL4 (ENSORLG00000024764)	ENSORLG00000030147	cndp2 (ENSORLG00000019164)	ENSORLG00000023295	dus3l (ENSORLG00000030245)	MTERF1 (ENSORLG00000027811)	ENSORLG00000024311 ##22	ENSORLG00000030522 ##22	cyp51 (ENSORLG00000020002)	krit1 (ENSORLG00000020220)	rpz2 (ENSORLG00000020218)	ENSORLG00000028610	si:dkey-266f7.9 (ENSORLG00000018515)	mrpl9 (ENSORLG00000026444)	prcc (ENSORLG00000020217)	ENSORLG00000028666	mrpl24 (ENSORLG00000020211)	ENSORLG00000026486	MEF2D (ENSORLG00000027797)	ENSORLG00000027487	ENSORLG00000028118	ENSORLG00000026266
Japanese Medaka HdrR	MODERN SPECIES	2	ENSORLG00000023702	GPR20 (ENSORLG00000022557)	cfap20 (ENSORLG00000024355)	dgat1a (ENSORLG00000019263)	ENSORLG00000027147	ENSORLG00000026428	zgc:63863 (ENSORLG00000019247)	SCRT1 (ENSORLG00000022825)	RECQL4 (ENSORLG00000024764)	ENSORLG00000030147	cndp2 (ENSORLG00000019164)	ENSORLG00000023295	dus3l (ENSORLG00000030245)	MTERF1 (ENSORLG00000027811)	ENSORLG00000024311 ##22	ENSORLG00000030522 ##22	cyp51 (ENSORLG00000020002)	krit1 (ENSORLG00000020220)	rpz2 (ENSORLG00000020218)	ENSORLG00000028610	si:dkey-266f7.9 (ENSORLG00000018515)	mrpl9 (ENSORLG00000026444)	prcc (ENSORLG00000020217)	ENSORLG00000028666	mrpl24 (ENSORLG00000020211)	ENSORLG00000026486	MEF2D (ENSORLG00000027797)	ENSORLG00000027487	ENSORLG00000028118	ENSORLG00000026266	ENSORLG00000000281
Oryzias_b	ANCESTRAL SPECIES	31	ENSGT00940000155784.C.v	ENSGT00950000182914.a.a.a.d	ENSGT00530000063461.A.b	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00940000163756.c.a	ENSGT00940000171595	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES		hadhab (ENSOMEG00000023658)	ENSOMEG00000023650	ENSOMEG00000023647	ENSOMEG00000023634	ENSOMEG00000023597	jkamp (ENSOMEG00000023589)	GALNT16 (ENSOMEG00000023575)	numb (ENSOMEG00000023564)	exd2 (ENSOMEG00000023552)	slc39a4 (ENSOMEG00000023543)	RECQL4 (ENSOMEG00000023534)	cndp2 (ENSOMEG00000023514)	ENSOMEG00000023503	dus3l (ENSOMEG00000023500)	MTERF1 (ENSOMEG00000023485)	ENSOMEG00000023478 ##22	ENSOMEG00000023464 ##22	cyp51 (ENSOMEG00000023434)	krit1 (ENSOMEG00000023406)	COQ8A (ENSOMEG00000023393)	TATDN3 (ENSOMEG00000023369)	fuca2 (ENSOMEG00000023345)	ENSOMEG00000023332	ENSOMEG00000023329	txlnbb (ENSOMEG00000023322)	dusp23a (ENSOMEG00000023312)	gng2 (ENSOMEG00000023305)	frmd6 (ENSOMEG00000023297)	tmx1 (ENSOMEG00000023272)	trim9 (ENSOMEG00000023261)	ENSOMEG00000023234
Indian medaka	MODERN SPECIES		ENSOMEG00000023650	ENSOMEG00000023647	ENSOMEG00000023634	ENSOMEG00000023597	jkamp (ENSOMEG00000023589)	GALNT16 (ENSOMEG00000023575)	numb (ENSOMEG00000023564)	exd2 (ENSOMEG00000023552)	slc39a4 (ENSOMEG00000023543)	RECQL4 (ENSOMEG00000023534)	cndp2 (ENSOMEG00000023514)	ENSOMEG00000023503	dus3l (ENSOMEG00000023500)	MTERF1 (ENSOMEG00000023485)	ENSOMEG00000023478 ##22	ENSOMEG00000023464 ##22	cyp51 (ENSOMEG00000023434)	krit1 (ENSOMEG00000023406)	COQ8A (ENSOMEG00000023393)	TATDN3 (ENSOMEG00000023369)	fuca2 (ENSOMEG00000023345)	ENSOMEG00000023332	ENSOMEG00000023329	txlnbb (ENSOMEG00000023322)	dusp23a (ENSOMEG00000023312)	gng2 (ENSOMEG00000023305)	frmd6 (ENSOMEG00000023297)	tmx1 (ENSOMEG00000023272)	trim9 (ENSOMEG00000023261)	ENSOMEG00000023234	srsf5a (ENSOMEG00000000628)
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485.`b	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Mangrove rivulus	MODERN SPECIES	2	PTK2 (ENSKMAG00000009027)	DENND3 (ENSKMAG00000009201)	SLC45A4 (ENSKMAG00000009242)	cfap20 (ENSKMAG00000009263)	cfap20 (ENSKMAG00000009297)	dgat1a (ENSKMAG00000009340)	zgc:63863 (ENSKMAG00000009431)	KLHL10 (ENSKMAG00000009467)	ENSKMAG00000009489	ENSKMAG00000009503	ENSKMAG00000009537	cndp2 (ENSKMAG00000009618)	ENSKMAG00000009653	dus3l (ENSKMAG00000009675)	MTERF1 (ENSKMAG00000009695)	ENSKMAG00000009757 ##22	cyp51 (ENSKMAG00000010014)	krit1 (ENSKMAG00000010171)	rpz2 (ENSKMAG00000010231)	si:dkey-266f7.9 (ENSKMAG00000010239)	ENSKMAG00000010253	mrpl9 (ENSKMAG00000010267)	prcc (ENSKMAG00000010290)	HDGF (ENSKMAG00000010315)	mrpl24 (ENSKMAG00000010337)	ENSKMAG00000010359	mef2d (ENSKMAG00000010472)	ENSKMAG00000010609	ENSKMAG00000010624	RPS19 (ENSKMAG00000010771)	ENSKMAG00000010795
Turquoise killifish	MODERN SPECIES	1628	DENND3 (ENSNFUG00015021646)	SLC45A4 (ENSNFUG00015021684)	ENSNFUG00015021692	ENSNFUG00015021704	DGAT1A (ENSNFUG00015021711)	Nfu_g_1_004128 (ENSNFUG00015021764)	SCRT1 (ENSNFUG00015021772)	ENSNFUG00015021778	SLC39A4 (ENSNFUG00015021780)	RECQL4 (ENSNFUG00015021784)	cndp2 (ENSNFUG00015021804)	ENSNFUG00015021838	dus3l (ENSNFUG00015021851)	MTERF1 (ENSNFUG00015022166)	ENSNFUG00015022167	ENSNFUG00015022173 ##22	cyp51 (ENSNFUG00015022236)	KRIT1 (ENSNFUG00015022280)	RPZ2 (ENSNFUG00015022292)	Nfu_g_1_004159 (ENSNFUG00015022293)	MRPL9 (ENSNFUG00015022295)	PRCC (ENSNFUG00015022302)	ENSNFUG00015022306	ENSNFUG00015022308	mrpl24 (ENSNFUG00015022310)	MEF2D (ENSNFUG00015022324)	tmem79a (ENSNFUG00015009635)	ENSNFUG00015009646	ENSNFUG00015009707	ENSNFUG00015009951	ndufv1 (ENSNFUG00015009972)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.i	ENSGT00940000156500.j	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.i	ENSGT00940000156500.j	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	4	rplp1 (ENSXMAG00000015532)	PTK2 (ENSXMAG00000015476)	DENND3 (ENSXMAG00000015472)	SLC45A4 (ENSXMAG00000015412)	GPR20 (ENSXMAG00000015403)	cfap20 (ENSXMAG00000015399)	dgat1a (ENSXMAG00000015366)	zgc:63863 (ENSXMAG00000015355)	SCRT1 (ENSXMAG00000015353)	ENSXMAG00000015339	ENSXMAG00000015315	cndp2 (ENSXMAG00000015266)	dus3l (ENSXMAG00000015252)	ENSXMAG00000029672 ##22	ENSXMAG00000029166	ENSXMAG00000015218 ##22	cyp51 (ENSXMAG00000015173)	krit1 (ENSXMAG00000015127)	rpz2 (ENSXMAG00000015126)	si:dkey-266f7.9 (ENSXMAG00000015124)	ENSXMAG00000022666	mrpl9 (ENSXMAG00000028983)	prcc (ENSXMAG00000015108)	HDGF (ENSXMAG00000025538)	mrpl24 (ENSXMAG00000015099)	ENSXMAG00000015085	mef2d (ENSXMAG00000015057)	ENSXMAG00000028213	ENSXMAG00000023896	ENSXMAG00000028381	RPS19 (ENSXMAG00000015051)
Platyfish	MODERN SPECIES	4	trps1 (ENSXMAG00000015559)	clptm1l (ENSXMAG00000015553)	rplp1 (ENSXMAG00000015532)	PTK2 (ENSXMAG00000015476)	DENND3 (ENSXMAG00000015472)	SLC45A4 (ENSXMAG00000015412)	GPR20 (ENSXMAG00000015403)	cfap20 (ENSXMAG00000015399)	dgat1a (ENSXMAG00000015366)	zgc:63863 (ENSXMAG00000015355)	SCRT1 (ENSXMAG00000015353)	ENSXMAG00000015339	ENSXMAG00000015315	cndp2 (ENSXMAG00000015266)	dus3l (ENSXMAG00000015252)	ENSXMAG00000029672 ##22	ENSXMAG00000029166	ENSXMAG00000015218 ##22	cyp51 (ENSXMAG00000015173)	krit1 (ENSXMAG00000015127)	rpz2 (ENSXMAG00000015126)	si:dkey-266f7.9 (ENSXMAG00000015124)	ENSXMAG00000022666	mrpl9 (ENSXMAG00000028983)	prcc (ENSXMAG00000015108)	HDGF (ENSXMAG00000025538)	mrpl24 (ENSXMAG00000015099)	ENSXMAG00000015085	mef2d (ENSXMAG00000015057)	ENSXMAG00000028213	ENSXMAG00000023896
Poecilia	ANCESTRAL SPECIES	24	ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.i	ENSGT00940000156500.j	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a.g	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Guppy	DUPLICATION
Guppy	MODERN SPECIES	441	PTK2 (ENSPREG00000011683)	DENND3 (ENSPREG00000011896)	SLC45A4 (ENSPREG00000011989)	ENSPREG00000012010	cfap20 (ENSPREG00000012033)	dgat1a (ENSPREG00000012064)	zgc:63863 (ENSPREG00000012136)	ENSPREG00000012153	ENSPREG00000012166	slc39a4 (ENSPREG00000012173)	ENSPREG00000012196	cndp2 (ENSPREG00000012256)	cndp2 (ENSPREG00000012281)	dus3l (ENSPREG00000012315)	MTERF1 (ENSPREG00000012369)	ENSPREG00000012377 ##22	ENSPREG00000012409 ##22	cyp51 (ENSPREG00000012465)	krit1 (ENSPREG00000012501)	rpz2 (ENSPREG00000012560)	si:dkey-266f7.9 (ENSPREG00000012564)	mrpl9 (ENSPREG00000012577)	prcc (ENSPREG00000012592)	ENSPREG00000012601	HDGF (ENSPREG00000012607)	mrpl24 (ENSPREG00000012621)	ENSPREG00000012657	mef2d (ENSPREG00000012739)	ENSPREG00000012806	tmem79a (ENSPREG00000012825)	ENSPREG00000012831
Guppy	MODERN SPECIES	441	DENND3 (ENSPREG00000011896)	SLC45A4 (ENSPREG00000011989)	ENSPREG00000012010	cfap20 (ENSPREG00000012033)	dgat1a (ENSPREG00000012064)	zgc:63863 (ENSPREG00000012136)	ENSPREG00000012153	ENSPREG00000012166	slc39a4 (ENSPREG00000012173)	ENSPREG00000012196	cndp2 (ENSPREG00000012256)	cndp2 (ENSPREG00000012281)	dus3l (ENSPREG00000012315)	MTERF1 (ENSPREG00000012369)	ENSPREG00000012377 ##22	ENSPREG00000012409 ##22	cyp51 (ENSPREG00000012465)	krit1 (ENSPREG00000012501)	rpz2 (ENSPREG00000012560)	si:dkey-266f7.9 (ENSPREG00000012564)	mrpl9 (ENSPREG00000012577)	prcc (ENSPREG00000012592)	ENSPREG00000012601	HDGF (ENSPREG00000012607)	mrpl24 (ENSPREG00000012621)	ENSPREG00000012657	mef2d (ENSPREG00000012739)	ENSPREG00000012806	tmem79a (ENSPREG00000012825)	ENSPREG00000012831	RPS19 (ENSPREG00000012843)
NAME_6	ANCESTRAL SPECIES	171	ENSGT00530000063461.A.b	ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.i	ENSGT00940000156500.j	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000177924	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a.g	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT00940000163756.c.a
Sailfin molly	MODERN SPECIES	49	ENSPLAG00000011819	ENSPLAG00000011795	ENSPLAG00000011768	ENSPLAG00000011758	SLC45A4 (ENSPLAG00000011749)	cfap20 (ENSPLAG00000011743)	dgat1a (ENSPLAG00000011729)	zgc:63863 (ENSPLAG00000011723)	SCRT1 (ENSPLAG00000011718)	ENSPLAG00000011708	ENSPLAG00000011704	cndp2 (ENSPLAG00000011693)	cndp2 (ENSPLAG00000011675)	dus3l (ENSPLAG00000011636)	MTERF1 (ENSPLAG00000011584)	ENSPLAG00000011562 ##22	cyp51 (ENSPLAG00000011514)	krit1 (ENSPLAG00000011505)	rpz2 (ENSPLAG00000011463)	si:dkey-266f7.9 (ENSPLAG00000011455)	mrpl9 (ENSPLAG00000011446)	prcc (ENSPLAG00000011435)	ENSPLAG00000011429	ENSPLAG00000011420	mrpl24 (ENSPLAG00000011406)	ENSPLAG00000011384
Amazon molly	MODERN SPECIES	419	clptm1l (ENSPFOG00000003009)	rplp1 (ENSPFOG00000003310)	PTK2 (ENSPFOG00000003397)	DENND3 (ENSPFOG00000004408)	SLC45A4 (ENSPFOG00000004858)	cfap20 (ENSPFOG00000005171)	dgat1a (ENSPFOG00000005252)	zgc:63863 (ENSPFOG00000005444)	SCRT1 (ENSPFOG00000005616)	ENSPFOG00000005641	ENSPFOG00000005814	cndp2 (ENSPFOG00000006107)	cndp2 (ENSPFOG00000006653)	dus3l (ENSPFOG00000006750)	MTERF1 (ENSPFOG00000006919)	ENSPFOG00000006927 ##22	cyp51 (ENSPFOG00000007109)	krit1 (ENSPFOG00000007240)	rpz2 (ENSPFOG00000007497)	si:dkey-266f7.9 (ENSPFOG00000007505)	mrpl9 (ENSPFOG00000007514)	prcc (ENSPFOG00000007578)	HDGF (ENSPFOG00000007632)	mrpl24 (ENSPFOG00000007709)	ENSPFOG00000007758	mef2d (ENSPFOG00000007905)	tmem79a (ENSPFOG00000008048)	ENSPFOG00000023475	RPS19 (ENSPFOG00000008063)	ENSPFOG00000008123	ENSPFOG00000008269
NAME_4	ANCESTRAL SPECIES	10	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500.i	ENSGT00940000156500.j	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b.h	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1479										slc39a4 (ENSCVAG00000008003)	ENSCVAG00000007993	cndp2 (ENSCVAG00000007927)	cndp2 (ENSCVAG00000007883)	dus3l (ENSCVAG00000007874)	MTERF1 (ENSCVAG00000007837)	ENSCVAG00000007829 ##22	ENSCVAG00000007821 ##22	ENSCVAG00000007807 ##22
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1479								slc39a4 (ENSCVAG00000008003)	ENSCVAG00000007993	cndp2 (ENSCVAG00000007927)	cndp2 (ENSCVAG00000007883)	dus3l (ENSCVAG00000007874)	MTERF1 (ENSCVAG00000007837)	ENSCVAG00000007829 ##22	ENSCVAG00000007821 ##22	ENSCVAG00000007807 ##22
Sheepshead minnow	MODERN SPECIES	1479									slc39a4 (ENSCVAG00000008003)	ENSCVAG00000007993	cndp2 (ENSCVAG00000007927)	cndp2 (ENSCVAG00000007883)	dus3l (ENSCVAG00000007874)	MTERF1 (ENSCVAG00000007837)	ENSCVAG00000007829 ##22	ENSCVAG00000007821 ##22	ENSCVAG00000007807 ##22
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2348	DENND3 (ENSFHEG00000000219)	ENSFHEG00000009492	SLC45A4 (ENSFHEG00000009569)	GPR20 (ENSFHEG00000009588)	cfap20 (ENSFHEG00000009610)	dgat1a (ENSFHEG00000009713)	zgc:63863 (ENSFHEG00000009773)	SCRT1 (ENSFHEG00000009794)	slc39a4 (ENSFHEG00000009832)	RECQL4 (ENSFHEG00000009855)	cndp2 (ENSFHEG00000009872)	cndp2 (ENSFHEG00000010005)	ENSFHEG00000010012	dus3l (ENSFHEG00000010091)	MTERF1 (ENSFHEG00000000224)	ENSFHEG00000010104 ##22	ENSFHEG00000010129 ##22	cyp51 (ENSFHEG00000010179)	krit1 (ENSFHEG00000010263)	rpz2 (ENSFHEG00000010281)	rpz2 (ENSFHEG00000010304)	si:dkey-266f7.9 (ENSFHEG00000010313)	ENSFHEG00000010333	mrpl9 (ENSFHEG00000010344)	prcc (ENSFHEG00000010354)	HDGF (ENSFHEG00000010383)	mrpl24 (ENSFHEG00000010405)	ENSFHEG00000010495	mef2d (ENSFHEG00000010583)	tmem79a (ENSFHEG00000010593)	ENSFHEG00000010608
Mummichog	MODERN SPECIES	2348	ENSFHEG00000009492	SLC45A4 (ENSFHEG00000009569)	GPR20 (ENSFHEG00000009588)	cfap20 (ENSFHEG00000009610)	dgat1a (ENSFHEG00000009713)	zgc:63863 (ENSFHEG00000009773)	SCRT1 (ENSFHEG00000009794)	slc39a4 (ENSFHEG00000009832)	RECQL4 (ENSFHEG00000009855)	cndp2 (ENSFHEG00000009872)	cndp2 (ENSFHEG00000010005)	ENSFHEG00000010012	dus3l (ENSFHEG00000010091)	MTERF1 (ENSFHEG00000000224)	ENSFHEG00000010104 ##22	ENSFHEG00000010129 ##22	cyp51 (ENSFHEG00000010179)	krit1 (ENSFHEG00000010263)	rpz2 (ENSFHEG00000010281)	rpz2 (ENSFHEG00000010304)	si:dkey-266f7.9 (ENSFHEG00000010313)	ENSFHEG00000010333	mrpl9 (ENSFHEG00000010344)	prcc (ENSFHEG00000010354)	HDGF (ENSFHEG00000010383)	mrpl24 (ENSFHEG00000010405)	ENSFHEG00000010495	mef2d (ENSFHEG00000010583)	tmem79a (ENSFHEG00000010593)	ENSFHEG00000010608	RPS19 (ENSFHEG00000010653)
Cod	MODERN SPECIES	14	serinc2 (ENSGMOG00000005298)	ENSGMOG00000029713	edn2 (ENSGMOG00000028377)	ENSGMOG00000005255	ENSGMOG00000007210	tent5bb (ENSGMOG00000018930)	ENSGMOG00000023083	tbxta (ENSGMOG00000018941)	nudc (ENSGMOG00000018951)	ENSGMOG00000032484	tpbga (ENSGMOG00000035490)	ENSGMOG00000000239	paqr7a (ENSGMOG00000018974)	ENSGMOG00000000042	ENSGMOG00000007115	ENSGMOG00000007209 ##22	ENSGMOG00000007262	ENSGMOG00000011366	ENSGMOG00000011329	ENSGMOG00000027353	ENSGMOG00000001186	ENSGMOG00000023867	ENSGMOG00000001340	ENSGMOG00000029940	ENSGMOG00000013833	zgc:63863 (ENSGMOG00000009822)	ENSGMOG00000036473	dgat1a (ENSGMOG00000016836)	cfap20 (ENSGMOG00000016832)	ENSGMOG00000029829	ENSGMOG00000034931
Protacanthopterygii	ANCESTRAL SPECIES	401															ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	324															ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.fb ##22	ENSGT00930000151026.u.a	ENSGT00940000161427	ENSGT00730000110871.a.a.a.a.gb ##22	ENSGT00930000151026.v	ENSGT00530000063721.A.j	ENSGT00940000165143.a.b.p.b.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042.g	ENSGT00940000157485.t	ENSGT00400000025005	ENSGT00950000182919.B.a.h	ENSGT00940000159283.c.a.d	ENSGT00940000158522.m.l	ENSGT00990000204388.c
Salmoninae_a	ANCESTRAL SPECIES	28						ENSGT00500000044904.a.b.g.a.b	ENSGT00500000044904.a.b.g.a.a	ENSGT00950000182966.A.a.b.a.h.d	ENSGT00940000161408.d	ENSGT00950000183051.a.a.a.c	ENSGT00940000156500.q	ENSGT00550000075134.e	ENSGT00940000162584.i.b.b	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.fb ##22	ENSGT00930000151026.u.b	ENSGT00530000063721.A.i	ENSGT00940000165143.a.b.p.b.a	ENSGT00390000009042.h.a	ENSGT00940000157485.u	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000159283.c.a.c	ENSGT00940000158522.m.k	ENSGT00990000204388.d	ENSGT00390000004097.b.j.b	ENSGT01050000244841.A.a.a.b.d	ENSGT00940000164559.A.d	ENSGT00390000005125.q	ENSGT00390000005125.p.b	ENSGT00940000160977.f.e
Salmo	ANCESTRAL SPECIES	2										ENSGT00940000161408.d	ENSGT00950000183051.a.a.a.c	ENSGT00940000156500.q	ENSGT00550000075134.e	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.fb ##22	ENSGT00930000151026.u.b	ENSGT00530000063721.A.i	ENSGT00940000165143.a.b.p.b.a	ENSGT00390000009042.h.a	ENSGT00940000157485.u	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000159283.c.a.c	ENSGT00940000158522.m.k	ENSGT00990000204388.d	ENSGT00390000004097.b.j.b	ENSGT01050000244841.A.a.a.b.d	ENSGT00940000164559.A.d	ENSGT00390000005125.q	ENSGT00940000160977.f.e	ENSGT00940000164926.e.a
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000099708	ENSSSAG00000058744	ENSSSAG00000083075	ENSSSAG00000120108	ENSSSAG00000058764	ENSSSAG00000058781	ENSSSAG00000112227	znf516 (ENSSSAG00000058806)	ENSSSAG00000058840	ENSSSAG00000093835	cndp2 (ENSSSAG00000058866)	ENSSSAG00000111419	dus3l (ENSSSAG00000059369)	ENSSSAG00000109696	MTERF1 (ENSSSAG00000106222)	ENSSSAG00000059650 ##22	cyp51 (ENSSSAG00000059749)	krit1 (ENSSSAG00000062253)	ENSSSAG00000099070	PRCC (ENSSSAG00000062526)	ENSSSAG00000062558	ENSSSAG00000062587	ENSSSAG00000062793	txnip (ENSSSAG00000063333)	ENSSSAG00000063338	ENSSSAG00000063343	ENSSSAG00000063356	ENSSSAG00000063376	ENSSSAG00000098425	ENSSSAG00000063441	ENSSSAG00000063461
River trout	MODERN SPECIES	27	ENSSTUG00000040686	ENSSTUG00000040697	ENSSTUG00000040711	ENSSTUG00000040720	ENSSTUG00000040746	ENSSTUG00000040813	ENSSTUG00000041698	znf516 (ENSSTUG00000041709)	tshz1 (ENSSTUG00000041756)	cndp2 (ENSSTUG00000041778)	ENSSTUG00000042520	bdh2 (ENSSTUG00000042527)	dus3l (ENSSTUG00000042566)	ENSSTUG00000043330	MTERF1 (ENSSTUG00000043339)	ENSSTUG00000043346 ##22	cyp51 (ENSSTUG00000043420)	krit1 (ENSSTUG00000043598)	ENSSTUG00000043701	rpz2 (ENSSTUG00000043707)	prcc (ENSSTUG00000043712)	HDGF (ENSSTUG00000043726)	mtx1b (ENSSTUG00000043730)	thbs3b (ENSSTUG00000043786)	txnipa (ENSSTUG00000045792)	polr3gla (ENSSTUG00000045798)	gatad2b (ENSSTUG00000045810)	gnrhr1 (ENSSTUG00000045828)	ENSSTUG00000045833	SSR2 (ENSSTUG00000045894)	ENSSTUG00000045916
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT01030000234589.g.a.a.b.b	ENSGT00940000153770.h.a.b.a.b.a	ENSGT00940000154869.b.d	ENSGT00940000153770.h.a.b.a.a	ENSGT01100000263549.j.a.b.a	ENSGT01030000234589.g.a.a.a	ENSGT00940000153770.h.a.b.a.b.b	ENSGT01030000234589.g.a.a.b.a	ENSGT00940000161408.d	ENSGT00950000183051.a.a.a.c	ENSGT00940000156500.q	ENSGT00550000075134.e	ENSGT00940000162584.i.b.b	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00530000063817.a.q	ENSGT00730000110871.a.a.a.a.fb ##22	ENSGT00930000151026.u.b	ENSGT00530000063721.A.i	ENSGT00940000165143.a.b.p.b.a	ENSGT00390000009042.h.a	ENSGT00940000157485.u	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000159283.c.a.c	ENSGT00940000158522.m.k	ENSGT00990000204388.d	ENSGT00390000004097.b.j.b	ENSGT01050000244841.A.a.a.b.d	ENSGT00940000164559.A.d	ENSGT00390000005125.p.b	ENSGT00940000160977.f.e	ENSGT00940000164926.e.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000052246	ENSOMYG00000052652	ENSOMYG00000020736	ENSOMYG00000020708	znf516 (ENSOMYG00000020814)	ENSOMYG00000060928	ENSOMYG00000054391	ENSOMYG00000020835	cndp2 (ENSOMYG00000020972)	ENSOMYG00000022189	dus3l (ENSOMYG00000022215)	FZD1 (ENSOMYG00000022288)	ENSOMYG00000022295	MTERF1 (ENSOMYG00000022305)	ENSOMYG00000058747 ##22	ENSOMYG00000022465 ##22	ENSOMYG00000065290	cyp51 (ENSOMYG00000022720)	KRIT1 (ENSOMYG00000022964)	ENSOMYG00000023042	ENSOMYG00000023059	ENSOMYG00000023121	ENSOMYG00000023141	ENSOMYG00000023160	ENSOMYG00000023842	ENSOMYG00000027712	ENSOMYG00000066458	ENSOMYG00000067439	ENSOMYG00000027771	ENSOMYG00000027791	ENSOMYG00000027820
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000074249	ENSOMYG00000052246	ENSOMYG00000052652	ENSOMYG00000020736	ENSOMYG00000020708	znf516 (ENSOMYG00000020814)	ENSOMYG00000060928	ENSOMYG00000054391	ENSOMYG00000020835	cndp2 (ENSOMYG00000020972)	ENSOMYG00000022189	dus3l (ENSOMYG00000022215)	FZD1 (ENSOMYG00000022288)	ENSOMYG00000022295	MTERF1 (ENSOMYG00000022305)	ENSOMYG00000058747 ##22	ENSOMYG00000022465 ##22	ENSOMYG00000065290	cyp51 (ENSOMYG00000022720)	KRIT1 (ENSOMYG00000022964)	ENSOMYG00000023042	ENSOMYG00000023059	ENSOMYG00000023121	ENSOMYG00000023141	ENSOMYG00000023160	ENSOMYG00000023842	ENSOMYG00000027712	ENSOMYG00000066458	ENSOMYG00000067439	ENSOMYG00000027771	ENSOMYG00000027791
Oncorhynchus_a	ANCESTRAL SPECIES	29				ENSGT00950000182966.A.a.b.a.h.d	ENSGT00950000182912.b.a.a.a.b.a.a	ENSGT01030000234589.g.a.a.b.a	ENSGT01100000263549.j.a.b.b	ENSGT00940000153770.h.a.a	ENSGT00940000161408.d	ENSGT00950000183051.a.a.a.c	ENSGT00940000156500.q	ENSGT00550000075134.e	ENSGT00940000162584.i.b.b	ENSGT00970000193390.c.a.b.b.b.a	ENSGT00530000063817.a.q	ENSGT00730000110871.a.a.a.a.fb ##22	ENSGT00930000151026.u.b	ENSGT00530000063721.A.i	ENSGT00940000165143.a.b.p.b.a	ENSGT00390000009042.h.a	ENSGT00940000157485.u	ENSGT00950000182919.B.a.h.d.a	ENSGT00940000159283.c.a.c	ENSGT00940000158522.m.k	ENSGT00990000204388.d	ENSGT00390000004097.b.j.b	ENSGT01050000244841.A.a.a.b.d	ENSGT00940000164559.A.d	ENSGT00390000005125.p.b	ENSGT00940000160977.f.e	ENSGT00940000164926.e.a
Coho salmon	MODERN SPECIES	8	ENSOKIG00005023308	ENSOKIG00005023296	ENSOKIG00005023275	ENSOKIG00005023263	ENSOKIG00005023258	ENSOKIG00005022991	ENSOKIG00005022891	znf516 (ENSOKIG00005022872)	tshz1 (ENSOKIG00005022861)	cndp2 (ENSOKIG00005022011)	dus3l (ENSOKIG00005021219)	FZD1 (ENSOKIG00005021170)	FZD1 (ENSOKIG00005021152)	ENSOKIG00005021137	MTERF1 (ENSOKIG00005021131)	ENSOKIG00005021127 ##22	cyp51 (ENSOKIG00005020736)	KRIT1 (ENSOKIG00005020670)	ENSOKIG00005020655	ENSOKIG00005020642	HDGF (ENSOKIG00005020633)	ENSOKIG00005020623	ENSOKIG00005020574	thbs3b (ENSOKIG00005018833)	txnipa (ENSOKIG00005018718)	ENSOKIG00005018699	gatad2b (ENSOKIG00005018686)	gnrhr1 (ENSOKIG00005018676)	ENSOKIG00005018667	ssr2 (ENSOKIG00005018634)	ENSOKIG00005018592
Chinook salmon	MODERN SPECIES	4	ENSOTSG00005014609	ENSOTSG00005014607	ENSOTSG00005014605	ENSOTSG00005014603	ENSOTSG00005014602	ENSOTSG00005014601	ENSOTSG00005014600	ENSOTSG00005014598	znf516 (ENSOTSG00005014597)	tshz1 (ENSOTSG00005014595)	cndp2 (ENSOTSG00005014257)	dus3l (ENSOTSG00005013909)	fzd1 (ENSOTSG00005013899)	ENSOTSG00005013897	MTERF1 (ENSOTSG00005013895)	ENSOTSG00005013893 ##22	cyp51 (ENSOTSG00005013330)	krit1 (ENSOTSG00005013317)	rpz2 (ENSOTSG00005013315)	prcc (ENSOTSG00005013313)	HDGF (ENSOTSG00005013311)	mtx1b (ENSOTSG00005013309)	thbs3b (ENSOTSG00005009681)	txnipa (ENSOTSG00005009674)	polr3gla (ENSOTSG00005009673)	gatad2b (ENSOTSG00005009672)	gnrhr1 (ENSOTSG00005009671)	ENSOTSG00005009670	ssr2 (ENSOTSG00005009659)	ENSOTSG00005009653	ENSOTSG00005009652
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1199														fzd1 (ENSHHUG00000029118)	ENSHHUG00000029114	ENSHHUG00000029102 ##22	ENSHHUG00000029083 ##22	ENSHHUG00000029070 ##22	cyp51 (ENSHHUG00000029049)	LRRD1 (ENSHHUG00000028985)	krit1 (ENSHHUG00000028856)	rpz2 (ENSHHUG00000028842)	si:dkey-266f7.9 (ENSHHUG00000028835)	mrpl9 (ENSHHUG00000028800)	prcc (ENSHHUG00000028793)	HDGF (ENSHHUG00000028785)	ENSHHUG00000028777
Huchen	MODERN SPECIES	1199												fzd1 (ENSHHUG00000029118)	ENSHHUG00000029114	ENSHHUG00000029102 ##22	ENSHHUG00000029083 ##22	ENSHHUG00000029070 ##22	cyp51 (ENSHHUG00000029049)	LRRD1 (ENSHHUG00000028985)	krit1 (ENSHHUG00000028856)	rpz2 (ENSHHUG00000028842)	si:dkey-266f7.9 (ENSHHUG00000028835)	mrpl9 (ENSHHUG00000028800)	prcc (ENSHHUG00000028793)	HDGF (ENSHHUG00000028785)	ENSHHUG00000028777
Huchen	MODERN SPECIES	1199													fzd1 (ENSHHUG00000029118)	ENSHHUG00000029114	ENSHHUG00000029102 ##22	ENSHHUG00000029083 ##22	ENSHHUG00000029070 ##22	cyp51 (ENSHHUG00000029049)	LRRD1 (ENSHHUG00000028985)	krit1 (ENSHHUG00000028856)	rpz2 (ENSHHUG00000028842)	si:dkey-266f7.9 (ENSHHUG00000028835)	mrpl9 (ENSHHUG00000028800)	prcc (ENSHHUG00000028793)	HDGF (ENSHHUG00000028785)	ENSHHUG00000028777
Huchen	MODERN SPECIES	923													dus3l (ENSHHUG00000028608)	ENSHHUG00000028644	MTERF1 (ENSHHUG00000028650)	ENSHHUG00000028657 ##22	ENSHHUG00000028701	ENSHHUG00000028702	cyp51 (ENSHHUG00000028708)	krit1 (ENSHHUG00000028759)	rpz2 (ENSHHUG00000028803)	prcc (ENSHHUG00000028806)	HDGF (ENSHHUG00000028814)
Salmoninae	ANCESTRAL SPECIES	324												ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.fb ##22	ENSGT00930000151026.u.a	ENSGT00940000161427	ENSGT00730000110871.a.a.a.a.gb ##22	ENSGT00930000151026.v	ENSGT00530000063721.A.j	ENSGT00940000165143.a.b.p.b.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042.g	ENSGT00940000157485.t	ENSGT00400000025005	ENSGT00950000182919.B.a.h	ENSGT00940000159283.c.a.d	ENSGT00940000158522.m.l	ENSGT00990000204388.c	ENSGT00390000004097.b.j.a	ENSGT01050000244841.A.a.a.b.c	ENSGT00940000164559.A.c
Huchen	DUPLICATION
Huchen	MODERN SPECIES	11268																ENSHHUG00000014330 ##22
Huchen	MODERN SPECIES	11244																ENSHHUG00000014147 ##22
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00530000064067.p	ENSGT00940000159463.n.b.a	ENSGT00390000002390.b.f.b	ENSGT00530000064067.o	ENSGT00950000182966.A.a.b.a.h.c	ENSGT01030000234589.g.a.b	ENSGT01100000263549.j.b	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT00940000161408.c	ENSGT00950000183051.a.a.a.d	ENSGT00940000156500.r	ENSGT00940000163253.a.a.b	ENSGT00550000075134.f	ENSGT00940000162584.i.b.a	ENSGT00940000163581.f.b.k.a	ENSGT00730000110871.a.a.a.a.gb ##22	ENSGT00930000151026.u.a	ENSGT00940000161019.ub	ENSGT00930000151026.v	ENSGT00530000063721.A.j	ENSGT00940000165143.a.b.p.b.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042.g	ENSGT00940000157485.t	ENSGT00400000025005	ENSGT00950000182919.B.a.h.c	ENSGT00940000159283.c.a.d	ENSGT00940000158522.m.l	ENSGT00990000204388.c	ENSGT00390000004097.b.j.a
Salmo	ANCESTRAL SPECIES	2	ENSGT00390000014542.d	ENSGT00940000157343.a.a.m	ENSGT00940000159463.n.b.a	ENSGT00390000002390.b.f.b	ENSGT00530000064067.o	ENSGT00950000182966.A.a.b.a.h.c	ENSGT01030000234589.g.a.b	ENSGT01100000263549.j.b	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT00940000161408.c	ENSGT00950000183051.a.a.a.d	ENSGT00940000156500.r	ENSGT00940000163253.a.a.b	ENSGT00550000075134.f	ENSGT00940000163581.f.b.k.a	ENSGT00730000110871.a.a.a.a.gb ##22	ENSGT00930000151026.u.a	ENSGT00940000161019.ub	ENSGT00530000063721.A.j	ENSGT00940000165143.a.b.p.b.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042.g	ENSGT00940000157485.t	ENSGT00400000025005	ENSGT00950000182919.B.a.h.c	ENSGT00940000159283.c.a.d	ENSGT00940000158522.m.l	ENSGT00990000204388.c	ENSGT00390000004097.b.j.a	ENSGT01050000244841.A.a.a.b.c
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000004604	ENSSSAG00000112881	ENSSSAG00000102280	ENSSSAG00000004697	ENSSSAG00000099657	ENSSSAG00000004730	ENSSSAG00000101162	znf516 (ENSSSAG00000004752)	ENSSSAG00000004779	cndp2 (ENSSSAG00000004830)	ENSSSAG00000004981	ENSSSAG00000112203	ENSSSAG00000106126	ENSSSAG00000096573	ifi44 (ENSSSAG00000005212)	ENSSSAG00000005008 ##22	ENSSSAG00000005253	ENSSSAG00000005531	KRIT1 (ENSSSAG00000005545)	ENSSSAG00000005580	ENSSSAG00000005589	RM09 (ENSSSAG00000005597)	ENSSSAG00000005617	ENSSSAG00000005628	ENSSSAG00000005646	ENSSSAG00000005666	ENSSSAG00000005800	TXNIP (ENSSSAG00000006557)	ENSSSAG00000104076	ENSSSAG00000006563	ENSSSAG00000006571
River trout	MODERN SPECIES	29	mrpl24 (ENSSTUG00000014506)	ENSSTUG00000014490	mef2d (ENSSTUG00000014448)	ENSSTUG00000014443	msto1 (ENSSTUG00000014437)	ENSSTUG00000014435	ENSSTUG00000014428	ENSSTUG00000014427	znf516 (ENSSTUG00000014422)	tshz1 (ENSSTUG00000033470)	cndp2 (ENSSTUG00000033363)	ENSSTUG00000033348	ENSSTUG00000033341	ENSSTUG00000033336	ENSSTUG00000033325	ENSSTUG00000033290 ##22	cyp51 (ENSSTUG00000033110)	ENSSTUG00000033092	krit1 (ENSSTUG00000033020)	rpz2 (ENSSTUG00000033013)	si:dkey-266f7.9 (ENSSTUG00000033006)	mrpl9 (ENSSTUG00000032961)	prcc (ENSSTUG00000032937)	HDGF (ENSSTUG00000032933)	ENSSTUG00000032919	thbs3b (ENSSTUG00000031803)	txnipa (ENSSTUG00000031744)	polr3gla (ENSSTUG00000031726)	gatad2b (ENSSTUG00000031702)	gnrhr1 (ENSSTUG00000031678)	ENSSTUG00000031591
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000159463.n.b.b	ENSGT00390000002390.b.f.a	ENSGT00530000064067.p	ENSGT00940000159463.n.b.a	ENSGT00390000002390.b.f.b	ENSGT00530000064067.o	ENSGT00950000182966.A.a.b.a.h.c.a	ENSGT00970000193381.a.a.c.b.a.a.b.a.b	ENSGT00940000161408.c	ENSGT00950000183051.a.a.a.d	ENSGT00940000156500.r	ENSGT00940000163253.a.a.b	ENSGT00550000075134.f	ENSGT00940000162584.i.b.a	ENSGT00940000163581.f.b.k.a	ENSGT00730000110871.a.a.a.a.gb ##22	ENSGT00930000151026.u.a	ENSGT00530000063721.A.j	ENSGT00940000165143.a.b.p.b.b	ENSGT00390000010118.c.b	ENSGT00390000008281.e	ENSGT00390000009042.h.b	ENSGT00940000157485.t	ENSGT00400000025005	ENSGT00950000182919.B.a.h.c	ENSGT00940000159283.c.a.d	ENSGT00940000158522.m.l	ENSGT00990000204388.c	ENSGT00390000004097.b.j.a	ENSGT01050000244841.A.a.a.b.c	ENSGT00940000164559.A.c
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000075050	ENSOMYG00000008696	znf516 (ENSOMYG00000008662)	ENSOMYG00000052299	ENSOMYG00000008624	cndp2 (ENSOMYG00000007904)	ENSOMYG00000070233	ENSOMYG00000006859	ENSOMYG00000074405	ENSOMYG00000006600	ENSOMYG00000006446	ENSOMYG00000006430	ENSOMYG00000061973	ENSOMYG00000006395	ENSOMYG00000076980	ENSOMYG00000006219 ##22	cyp51 (ENSOMYG00000005467)	KRIT1 (ENSOMYG00000004769)	ENSOMYG00000004640	ENSOMYG00000004618	ENSOMYG00000072203	ENSOMYG00000004600	ENSOMYG00000004547	ENSOMYG00000070446	ENSOMYG00000004436	ENSOMYG00000062114	ENSOMYG00000004384	ENSOMYG00000004157	ENSOMYG00000003676	ENSOMYG00000056440	ENSOMYG00000027753
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000157343.a.a.n	ENSGT00940000159463.n.b.b.a	ENSGT00390000002390.b.f.a	ENSGT00530000064067.p	ENSGT00940000159463.n.b.b.b	ENSGT00940000159463.n.b.a	ENSGT00390000002390.b.f.b	ENSGT00530000064067.o	ENSGT00950000182966.A.a.b.a.h.c.a	ENSGT00940000161408.c	ENSGT00950000183051.a.a.a.d	ENSGT00940000156500.r	ENSGT00940000163253.a.a.b	ENSGT00940000162584.i.b.a	ENSGT00940000163581.f.b.k.a	ENSGT00730000110871.a.a.a.a.gb ##22	ENSGT00930000151026.u.a	ENSGT00530000063721.A.j	ENSGT00940000165143.a.b.p.b.b	ENSGT00390000010118.c.b	ENSGT00390000008281.e	ENSGT00390000009042.g	ENSGT00940000157485.t	ENSGT00400000025005	ENSGT00950000182919.B.a.h.c	ENSGT00940000159283.c.a.d	ENSGT00940000158522.m.l	ENSGT00990000204388.c	ENSGT00390000004097.b.j.a	ENSGT01050000244841.A.a.a.b.c	ENSGT00940000164559.A.c
Coho salmon	MODERN SPECIES	5	MEF2D (ENSOKIG00005018167)	tmem79a (ENSOKIG00005018262)	msto1 (ENSOKIG00005018277)	ENSOKIG00005018322	ENSOKIG00005018329	ENSOKIG00005018333	ENSOKIG00005018369	znf516 (ENSOKIG00005018381)	TSHZ1 (ENSOKIG00005018405)	cndp2 (ENSOKIG00005018519)	ENSOKIG00005020698	ENSOKIG00005020716	ENSOKIG00005020786	FZD1 (ENSOKIG00005020807)	ENSOKIG00005020815	ENSOKIG00005020995 ##22	cyp51 (ENSOKIG00005021176)	krit1 (ENSOKIG00005021520)	ENSOKIG00005021658	si:dkey-266f7.9 (ENSOKIG00005021669)	mrpl9 (ENSOKIG00005021682)	prcc (ENSOKIG00005023266)	HDGF (ENSOKIG00005023320)	ENSOKIG00005023353	ENSOKIG00005023361	ENSOKIG00005023372	THBS3 (ENSOKIG00005023505)	TXNIP (ENSOKIG00005025750)	ENSOKIG00005025790	GATAD2B (ENSOKIG00005025805)	ENSOKIG00005025815
Chinook salmon	MODERN SPECIES	24	ENSOTSG00005041909	ENSOTSG00005041907	ENSOTSG00005041906	ENSOTSG00005041905	znf516 (ENSOTSG00005041903)	tshz1 (ENSOTSG00005041902)	ddx20 (ENSOTSG00005041859)	atp6ap1lb (ENSOTSG00005041858)	B4GALT3 (ENSOTSG00005041856)	bgnb (ENSOTSG00005041823)	ENSOTSG00005041819	ENSOTSG00005041817	fzd1 (ENSOTSG00005041816)	ENSOTSG00005041815	ENSOTSG00005041814	ENSOTSG00005041800 ##22	CYP51A1 (ENSOTSG00005041779)	krit1 (ENSOTSG00005041675)	rpz2 (ENSOTSG00005041778)	si:dkey-266f7.9 (ENSOTSG00005041667)	mrpl9 (ENSOTSG00005041655)	prcc (ENSOTSG00005041654)	HDGF (ENSOTSG00005041653)	ENSOTSG00005041652	MTX1 (ENSOTSG00005041651)	thbs3b (ENSOTSG00005041370)	txnipa (ENSOTSG00005041365)	polr3gla (ENSOTSG00005041364)	gatad2b (ENSOTSG00005041363)	gnrhr1 (ENSOTSG00005041362)	ENSOTSG00005041361
Northern pike	MODERN SPECIES	9	ENSELUG00000015584	mrpl24 (ENSELUG00000015553)	ENSELUG00000015530	mef2d (ENSELUG00000015462)	tmem79a (ENSELUG00000015337)	msto1 (ENSELUG00000015313)	ENSELUG00000015242	ENSELUG00000015230	znf516 (ENSELUG00000015215)	tshz1 (ENSELUG00000015181)	cndp2 (ENSELUG00000015151)	ENSELUG00000015068	dus3l (ENSELUG00000015033)	fzd1 (ENSELUG00000014962)	MTERF1 (ENSELUG00000014952)	ENSELUG00000014810 ##22	cyp51 (ENSELUG00000014507)	krit1 (ENSELUG00000014458)	rpz2 (ENSELUG00000014409)	si:dkey-266f7.9 (ENSELUG00000014390)	mrpl9 (ENSELUG00000014367)	prcc (ENSELUG00000014219)	HDGF (ENSELUG00000014191)	ENSELUG00000014129	mtx1b (ENSELUG00000014089)	thbs3b (ENSELUG00000014052)	txnipa (ENSELUG00000013926)	polr3gla (ENSELUG00000013880)	gatad2b (ENSELUG00000013804)	gnrhr1 (ENSELUG00000013712)	ENSELUG00000013686
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	533														ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00930000151026	ENSGT00940000164558.k	ENSGT00530000063721.A
Clupeiformes	ANCESTRAL SPECIES	218	ENSGT00940000159308	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j	ENSGT00940000154725.i	ENSGT00960000192667	ENSGT00940000162035	ENSGT00950000183151.b	ENSGT00940000159821	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00950000183155.a.a.a.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00930000151026	ENSGT00940000164558.k	ENSGT00530000063721.A	ENSGT00940000155689	ENSGT00940000159209	ENSGT00390000016136	ENSGT00390000018319.b.b	ENSGT00950000182907.a.a.jc	ENSGT00530000063760.b.g.b	ENSGT00550000075028
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	12	KHDRBS3 (ENSDCDG00000019365)	ENSDCDG00000019358	ENSDCDG00000019354	ST3GAL1 (ENSDCDG00000019349)	ENSDCDG00000019344	ENSDCDG00000019341	cpsf1 (ENSDCDG00000009746)	adck5 (ENSDCDG00000008813)	ctdp1 (ENSDCDG00000008603)	KCNG2 (ENSDCDG00000008590)	SLC66A2 (ENSDCDG00000008583)	ENSDCDG00000008575	ENSDCDG00000008568	dus3l (ENSDCDG00000008471)	MTERF1 (ENSDCDG00000008454)	ENSDCDG00000008447 ##22	ENSDCDG00000008428 ##22	cyp51 (ENSDCDG00000006795)	ENSDCDG00000006518	ENSDCDG00000006347	ENSDCDG00000006084	ENSDCDG00000006033	ENSDCDG00000006001	cops8 (ENSDCDG00000005868)	ENSDCDG00000005832	gpr39 (ENSDCDG00000005820)	ENSDCDG00000005779	prcc (ENSDCDG00000035376)	mrpl24 (ENSDCDG00000035375)	sf3b4 (ENSDCDG00000035373)	scn1bb (ENSDCDG00000035371)
Denticle herring	MODERN SPECIES	306										ENSDCDG00000033057	SLC66A2 (ENSDCDG00000033055)	ENSDCDG00000033053	ENSDCDG00000033052	dus3l (ENSDCDG00000033034)	MTERF1 (ENSDCDG00000033028)	ENSDCDG00000033025 ##22	ENSDCDG00000033022 ##22	cyp51 (ENSDCDG00000032926)	ENSDCDG00000032909	ENSDCDG00000032905	ENSDCDG00000032903
Atlantic herring	MODERN SPECIES	10	PPP1R9A (ENSCHAG00000014840)	sgce (ENSCHAG00000014405)	ST3GAL1 (ENSCHAG00000014073)	ENSCHAG00000014046	ENSCHAG00000013952	cpsf1 (ENSCHAG00000013393)	adck5 (ENSCHAG00000013359)	ENSCHAG00000013351	ctdp1 (ENSCHAG00000013338)	KCNG2 (ENSCHAG00000013214)	SLC66A2 (ENSCHAG00000013195)	ENSCHAG00000013168	ENSCHAG00000013055	dus3l (ENSCHAG00000012827)	MTERF1 (ENSCHAG00000012810)	ENSCHAG00000012764 ##22	ENSCHAG00000012733 ##22	cyp51 (ENSCHAG00000012421)	ENSCHAG00000012104	krit1 (ENSCHAG00000011927)	ankib1a (ENSCHAG00000011555)	nfyc (ENSCHAG00000011068)	KCNQ4 (ENSCHAG00000010571)	jtb (ENSCHAG00000010548)	cart4 (ENSCHAG00000010522)	ANP32E (ENSCHAG00000010456)	ENSCHAG00000010432	plekho1a (ENSCHAG00000010422)	vps45 (ENSCHAG00000010188)	ENSCHAG00000010162	RING1 (ENSCHAG00000010131)
Otophysi	ANCESTRAL SPECIES	163														ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v	ENSGT00930000151026	ENSGT00390000000118	ENSGT00390000018531	ENSGT00940000158906.j	ENSGT00940000154896.k.a	ENSGT00940000154807.a.b.b	ENSGT00510000049601	ENSGT00530000064067	ENSGT00390000002390.b.f	ENSGT00390000005131	ENSGT00390000008146	ENSGT00940000170244	ENSGT00940000158728.k
Characiphysae	ANCESTRAL SPECIES	289														ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22
Channel catfish	MODERN SPECIES	5	nupl2 (ENSIPUG00000022884)	tert (ENSIPUG00000022566)	slc6a18 (ENSIPUG00000022540)	ENSIPUG00000022524	ENSIPUG00000022521	ENSIPUG00000022510	ENSIPUG00000022507	ENSIPUG00000022499	ENSIPUG00000022491	ENSIPUG00000022486	ENSIPUG00000022401	ENSIPUG00000022390	ENSIPUG00000022385	IRGC (ENSIPUG00000022382)	GSTA (ENSIPUG00000022366)	ENSIPUG00000022356 ##22	ENSIPUG00000022353	gpd1c (ENSIPUG00000022341)	ctss1 (ENSIPUG00000022334)	slc9a1b (ENSIPUG00000022329)	ENSIPUG00000022325	gja9 (ENSIPUG00000022316)	mycbp (ENSIPUG00000022301)	ENSIPUG00000022287
Characiphysae_b	ANCESTRAL SPECIES	320														ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22
Characoidei	ANCESTRAL SPECIES	457														ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22
Red-bellied piranha	MODERN SPECIES	1971																ENSPNAG00000025912 ##22
Mexicana tetra	MODERN SPECIES	428														dus3l (ENSAMXG00000043269)	MTERF1 (ENSAMXG00000017008)	ENSAMXG00000043162 ##22
Electric eel	MODERN SPECIES	1234														dus3l (ENSEEEG00000004700)	MTERF1 (ENSEEEG00000004710)	ENSEEEG00000004711 ##22
Cyprinoidei	ANCESTRAL SPECIES	35	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00940000160991.b.b	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m	ENSGT00940000154996.a.a.b	ENSGT00940000166429	ENSGT00390000003114.e.b.a	ENSGT00390000007153.a.b	ENSGT00940000155413.c	ENSGT00390000017503.j	ENSGT00390000003488.b.a.a	ENSGT00940000158641.a.a	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v.b	ENSGT00930000151026	ENSGT00390000000118	ENSGT00390000018531	ENSGT00940000158906.j	ENSGT00940000154896.k.a	ENSGT00940000166052	ENSGT00940000162033.a.a	ENSGT00940000158880	ENSGT00940000155137.a.a	ENSGT00940000164650	ENSGT00940000154896.l	ENSGT00940000154807.a.a	ENSGT00940000159208.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	349	ENSGT00390000017802.c.d	ENSGT00940000160991.b.b	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m.b	ENSGT00940000154996.a.a.b.d	ENSGT00940000166429.g.a	ENSGT00390000003114.e.b.a.g.a	ENSGT00390000007153.a.b.k.a	ENSGT00940000155413.c	ENSGT01090000260003.a.b.b.a.a.a.b.b.vb.b	ENSGT00390000017503.j	ENSGT00390000003488.b.a.a	ENSGT00940000158641.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb.c ##22
Cyprininae_a	ANCESTRAL SPECIES	537				ENSGT00940000158438.m.b	ENSGT00940000154996.a.a.b.d	ENSGT00940000166429.g.a	ENSGT00390000003114.e.b.a.g.a	ENSGT00390000007153.a.b.k.a	ENSGT00940000155413.c	ENSGT01090000260003.a.b.b.a.a.a.b.b.vb.b	ENSGT00390000017503.j.a	ENSGT00390000003488.b.a.a	ENSGT00940000158641.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb.c ##22
Golden-line barbel	MODERN SPECIES	1391											vps72a (ENSSGRG00000027126)	tnfaip8l2a (ENSSGRG00000027127)	sema6d (ENSSGRG00000027131)	dus3l (ENSSGRG00000027134)	MTERF1 (ENSSGRG00000027135)	ENSSGRG00000027137 ##22
Goldfish	MODERN SPECIES	38	ENSCARG00000030957	scn1bb (ENSCARG00000030963)	SYNGAP1 (ENSCARG00000030996)	ctss1 (ENSCARG00000031286)	gpd1c (ENSCARG00000031299)	ENSCARG00000031334	mcl1a (ENSCARG00000031345)	ENSCARG00000031364	glmp (ENSCARG00000031389)	tmem79a (ENSCARG00000031407)	cyp51 (ENSCARG00000031473)	nup42 (ENSCARG00000032042)	vps72a (ENSCARG00000032089)	tnfaip8l2a (ENSCARG00000032111)	sema6d (ENSCARG00000032130)	ENSCARG00000032357 ##22	sema6d (ENSCARG00000032391)	ENSCARG00000032447	ENSCARG00000032455	ENSCARG00000032464	ENSCARG00000032469	ENSCARG00000032487	glmp (ENSCARG00000032505)	ENSCARG00000032515	eomesa (ENSCARG00000032530)	ENSCARG00000032544	TGFBR2 (ENSCARG00000032564)	ENSCARG00000032632	ENSCARG00000032637	lrrc3b (ENSCARG00000032644)	DENND3 (ENSCARG00000032651)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a.hb.d ##22
Goldfish	MODERN SPECIES	10	fhl3b (ENSCARG00000046380)	daxx (ENSCARG00000046390)	zbtb22b (ENSCARG00000046403)	ENSCARG00000046416	znf384a (ENSCARG00000046482)	FLOT1 (ENSCARG00000046530)	ENSCARG00000046767	ENSCARG00000046781	ENSCARG00000046786	atp1a3a (ENSCARG00000046820)	ENSCARG00000047230	erf (ENSCARG00000047263)	ENSCARG00000047278	gsk3aa (ENSCARG00000047308)	GRIK5 (ENSCARG00000047410)	ENSCARG00000047819 ##22	ENSCARG00000047846	zgc:174904 (ENSCARG00000047870)	pdk2b (ENSCARG00000047913)	si:ch211-264f5.2 (ENSCARG00000047939)	FUT9 (ENSCARG00000047956)	wipf2b (ENSCARG00000047985)	ENSCARG00000048014	JUP (ENSCARG00000048083)	eif1 (ENSCARG00000048464)	ENSCARG00000048491	ENSCARG00000048563	krtt1c19e (ENSCARG00000048590)	ENSCARG00000048616	si:dkeyp-113d7.1 (ENSCARG00000048673)	ENSCARG00000048680
Otomorpha	ANCESTRAL SPECIES	533													ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00930000151026	ENSGT00940000164558.k	ENSGT00530000063721.A
Clupeiformes	ANCESTRAL SPECIES	218	ENSGT00940000156079	ENSGT00940000157280.l	ENSGT00940000154725.j	ENSGT00940000154725.i	ENSGT00960000192667	ENSGT00940000162035	ENSGT00950000183151.b	ENSGT00940000159821	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00950000183155.a.a.a.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00930000151026	ENSGT00940000164558.k	ENSGT00530000063721.A	ENSGT00940000155689	ENSGT00940000159209	ENSGT00390000016136	ENSGT00390000018319.b.b	ENSGT00950000182907.a.a.jc	ENSGT00530000063760.b.g.b	ENSGT00550000075028
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	12	ENSDCDG00000019358	ENSDCDG00000019354	ST3GAL1 (ENSDCDG00000019349)	ENSDCDG00000019344	ENSDCDG00000019341	cpsf1 (ENSDCDG00000009746)	adck5 (ENSDCDG00000008813)	ctdp1 (ENSDCDG00000008603)	KCNG2 (ENSDCDG00000008590)	SLC66A2 (ENSDCDG00000008583)	ENSDCDG00000008575	ENSDCDG00000008568	dus3l (ENSDCDG00000008471)	MTERF1 (ENSDCDG00000008454)	ENSDCDG00000008447 ##22	ENSDCDG00000008428 ##22	cyp51 (ENSDCDG00000006795)	ENSDCDG00000006518	ENSDCDG00000006347	ENSDCDG00000006084	ENSDCDG00000006033	ENSDCDG00000006001	cops8 (ENSDCDG00000005868)	ENSDCDG00000005832	gpr39 (ENSDCDG00000005820)	ENSDCDG00000005779	prcc (ENSDCDG00000035376)	mrpl24 (ENSDCDG00000035375)	sf3b4 (ENSDCDG00000035373)	scn1bb (ENSDCDG00000035371)	SYNGAP1 (ENSDCDG00000035330)
Denticle herring	MODERN SPECIES	306									ENSDCDG00000033057	SLC66A2 (ENSDCDG00000033055)	ENSDCDG00000033053	ENSDCDG00000033052	dus3l (ENSDCDG00000033034)	MTERF1 (ENSDCDG00000033028)	ENSDCDG00000033025 ##22	ENSDCDG00000033022 ##22	cyp51 (ENSDCDG00000032926)	ENSDCDG00000032909	ENSDCDG00000032905	ENSDCDG00000032903
Atlantic herring	MODERN SPECIES	10	sgce (ENSCHAG00000014405)	ST3GAL1 (ENSCHAG00000014073)	ENSCHAG00000014046	ENSCHAG00000013952	cpsf1 (ENSCHAG00000013393)	adck5 (ENSCHAG00000013359)	ENSCHAG00000013351	ctdp1 (ENSCHAG00000013338)	KCNG2 (ENSCHAG00000013214)	SLC66A2 (ENSCHAG00000013195)	ENSCHAG00000013168	ENSCHAG00000013055	dus3l (ENSCHAG00000012827)	MTERF1 (ENSCHAG00000012810)	ENSCHAG00000012764 ##22	ENSCHAG00000012733 ##22	cyp51 (ENSCHAG00000012421)	ENSCHAG00000012104	krit1 (ENSCHAG00000011927)	ankib1a (ENSCHAG00000011555)	nfyc (ENSCHAG00000011068)	KCNQ4 (ENSCHAG00000010571)	jtb (ENSCHAG00000010548)	cart4 (ENSCHAG00000010522)	ANP32E (ENSCHAG00000010456)	ENSCHAG00000010432	plekho1a (ENSCHAG00000010422)	vps45 (ENSCHAG00000010188)	ENSCHAG00000010162	RING1 (ENSCHAG00000010131)	rps18 (ENSCHAG00000010082)
Otophysi	ANCESTRAL SPECIES	163													ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v	ENSGT00930000151026	ENSGT00390000000118	ENSGT00390000018531	ENSGT00940000158906.j	ENSGT00940000154896.k.a	ENSGT00940000154807.a.b.b	ENSGT00510000049601	ENSGT00530000064067	ENSGT00390000002390.b.f	ENSGT00390000005131	ENSGT00390000008146	ENSGT00940000170244	ENSGT00940000158728.k	ENSGT00940000157131.a
Cyprinoidei	ANCESTRAL SPECIES	35	ENSGT00390000017802.c	ENSGT00940000160991.b.b	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m	ENSGT00940000154996.a.a.b	ENSGT00940000166429	ENSGT00390000003114.e.b.a	ENSGT00390000007153.a.b	ENSGT00940000155413.c	ENSGT00390000017503.j	ENSGT00390000003488.b.a.a	ENSGT00940000158641.a.a	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.hb ##22	ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v.b	ENSGT00930000151026	ENSGT00390000000118	ENSGT00390000018531	ENSGT00940000158906.j	ENSGT00940000154896.k.a	ENSGT00940000166052	ENSGT00940000162033.a.a	ENSGT00940000158880	ENSGT00940000155137.a.a	ENSGT00940000164650	ENSGT00940000154896.l	ENSGT00940000154807.a.a	ENSGT00940000159208.B	ENSGT01100000263473.b.a.a.a.a.a.a
Cyprininae	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a.ib ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.a.a.ib ##22
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	12	rnf139 (ENSCCRG00000005976)	tmem65 (ENSCCRG00000070351)	ENSCCRG00000057420	ENSCCRG00000005845	scn1bb (ENSCCRG00000005818)	ENSCCRG00000054969	lingo4a (ENSCCRG00000078790)	ctss1 (ENSCCRG00000011655)	gpd1c (ENSCCRG00000012575)	golph3l (ENSCCRG00000053701)	mcl1a (ENSCCRG00000072791)	vps72a (ENSCCRG00000063635)	tnfaip8l2a (ENSCCRG00000067036)	sema6d (ENSCCRG00000027037)	dus3l (ENSCCRG00000027014)	ENSCCRG00000081270 ##22	ENSCCRG00000054861 ##22	tert (ENSCCRG00000007842)	slc6a18 (ENSCCRG00000035164)	slc6a19a.1 (ENSCCRG00000035107)	ENSCCRG00000076804	gstr (ENSCCRG00000013532)	msto1 (ENSCCRG00000041022)	ENSCCRG00000041021	ENSCCRG00000041023	ENSCCRG00000071176	ENSCCRG00000006278	ENSCCRG00000057681	ENSCCRG00000075835	ENSCCRG00000045121	ENSCCRG00000071748
Common carp reference	MODERN SPECIES	12	tmem65 (ENSCCRG00000070351)	ENSCCRG00000057420	ENSCCRG00000005845	scn1bb (ENSCCRG00000005818)	ENSCCRG00000054969	lingo4a (ENSCCRG00000078790)	ctss1 (ENSCCRG00000011655)	gpd1c (ENSCCRG00000012575)	golph3l (ENSCCRG00000053701)	mcl1a (ENSCCRG00000072791)	vps72a (ENSCCRG00000063635)	tnfaip8l2a (ENSCCRG00000067036)	sema6d (ENSCCRG00000027037)	dus3l (ENSCCRG00000027014)	ENSCCRG00000081270 ##22	ENSCCRG00000054861 ##22	tert (ENSCCRG00000007842)	slc6a18 (ENSCCRG00000035164)	slc6a19a.1 (ENSCCRG00000035107)	ENSCCRG00000076804	gstr (ENSCCRG00000013532)	msto1 (ENSCCRG00000041022)	ENSCCRG00000041021	ENSCCRG00000041023	ENSCCRG00000071176	ENSCCRG00000006278	ENSCCRG00000057681	ENSCCRG00000075835	ENSCCRG00000045121	ENSCCRG00000071748	ENSCCRG00000066490
Zebrafish	MODERN SPECIES	10	tmem65 (ENSDARG00000076393)	ENSDARG00000020176	scn1bb (ENSDARG00000105003)	SYNGAP1 (ENSDARG00000063713)	lingo4a (ENSDARG00000094908)	ctss1 (ENSDARG00000036940)	gpd1c (ENSDARG00000036942)	golph3l (ENSDARG00000036943)	ensaa (ENSDARG00000036944)	mcl1a (ENSDARG00000009779)	vps72a (ENSDARG00000063718)	tnfaip8l2a (ENSDARG00000075592)	sema6d (ENSDARG00000002748)	dus3l (ENSDARG00000099528)	ENSDARG00000086107	ENSDARG00000079610 ##22	FUT9 (ENSDARG00000042643)	cyp51 (ENSDARG00000042641)	nup42 (ENSDARG00000029043)	tert (ENSDARG00000042637)	slc6a18 (ENSDARG00000068387)	slc6a19a.1 (ENSDARG00000018621)	ENSDARG00000091560	ENSDARG00000063682	gstr (ENSDARG00000042620)	msto1 (ENSDARG00000024381)	tmem79a (ENSDARG00000071250)	glmp (ENSDARG00000059354)	nrm (ENSDARG00000063690)	ENSDARG00000071251	eomesa (ENSDARG00000006640)
Characiphysae	ANCESTRAL SPECIES	511																ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v.d
Characiphysae_b	ANCESTRAL SPECIES	209																ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v.d.a.a	ENSGT00940000155095.i.b.b.v.d.b	ENSGT00930000151026	ENSGT00390000000118	ENSGT00390000018531	ENSGT00940000158906.j	ENSGT00940000154896.k.a	ENSGT00940000154807.a.b.b	ENSGT00510000049601	ENSGT00940000155095.i.b.b.v.c	ENSGT00530000064067	ENSGT00390000002390.b.f	ENSGT00390000005131
Electric eel	MODERN SPECIES	1437																ENSEEEG00000006479 ##22
Characoidei	ANCESTRAL SPECIES	275																ENSGT00730000110871.a.a.a.a.ib ##22	ENSGT00940000155095.i.b.b.v.d.a.a	ENSGT00940000155095.i.b.b.v.d.b	ENSGT00930000151026	ENSGT00390000000118	ENSGT00390000018531	ENSGT00940000158906.j	ENSGT00940000154896.k.a	ENSGT00940000154807.a.b.b	ENSGT00510000049601	ENSGT00940000155095.i.b.b.v.c	ENSGT00530000064067	ENSGT00390000002390.b.f	ENSGT00390000005131
Mexicana tetra	MODERN SPECIES	655																ENSAMXG00000031662 ##22	FUT9 (ENSAMXG00000036964)	FUT9 (ENSAMXG00000029761)	FUT9 (ENSAMXG00000038783)	CYP51A1 (ENSAMXG00000018398)	FUT9 (ENSAMXG00000037868)	cyp51 (ENSAMXG00000037314)	nup42 (ENSAMXG00000040873)	tert (ENSAMXG00000042832)	slc6a18 (ENSAMXG00000043218)	slc6a19a.1 (ENSAMXG00000018466)	ENSAMXG00000018455	ENSAMXG00000031443	ENSAMXG00000034144	ENSAMXG00000036388	ENSAMXG00000043953
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	6	ENSGT00920000149172	ENSGT00940000156446	ENSGT00940000160484	ENSGT00940000165015	ENSGT00510000051337	ENSGT00940000167743	ENSGT00390000004886	ENSGT00940000153979.B	ENSGT00940000166686	ENSGT00940000164984	ENSGT00940000157640.b	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.kb ##22	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a.jb ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621.v	ENSGT00390000018554	ENSGT00940000155549.a.a	ENSGT00940000157893	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a.i.b	ENSGT01030000235077	ENSGT00940000176888	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b
Asian bonytongue	MODERN SPECIES	15	atp9b (ENSSFOG00015009257)	SALL3 (ENSSFOG00015009159)	ENSSFOG00015009133	ENSSFOG00015032768	ENSSFOG00015030865	ZNF236 (ENSSFOG00015008994)	ZNF516 (ENSSFOG00015008969)	tshz1 (ENSSFOG00015008951)	cndp2 (ENSSFOG00015008900)	ENSSFOG00015008859	dus3l (ENSSFOG00015008797)	cdk14 (ENSSFOG00015008700)	FZD1 (ENSSFOG00015008660)	MTERF1 (ENSSFOG00015008650)	ENSSFOG00015031317 ##22	ENSSFOG00015008521 ##22	cyp51 (ENSSFOG00015008396)	krit1 (ENSSFOG00015008334)	ANKIB1 (ENSSFOG00015008273)	gatad1 (ENSSFOG00015008239)	CSMD3 (ENSSFOG00015008801)	ENSSFOG00015009120	trps1 (ENSSFOG00015009142)	eif3ha (ENSSFOG00015009193)	utp23 (ENSSFOG00015009226)	rad21b (ENSSFOG00015009246)	ENSSFOG00015009295	SLC30A8 (ENSSFOG00015009324)	med30 (ENSSFOG00015029678)	ext1b (ENSSFOG00015030667)	SAMD12 (ENSSFOG00015030534)
P. kingsleyae	MODERN SPECIES	13														MTERF1 (ENSPKIG00000017556)	ENSPKIG00000017576 ##22	ENSPKIG00000017609 ##22	cyp51 (ENSPKIG00000017630)	ENSPKIG00000017712	krit1 (ENSPKIG00000017853)	ANKIB1 (ENSPKIG00000017957)	gatad1 (ENSPKIG00000018020)	CSMD3 (ENSPKIG00000018213)	trps1 (ENSPKIG00000018718)	eif3ha (ENSPKIG00000018742)	utp23 (ENSPKIG00000018790)	rad21b (ENSPKIG00000018829)	ENSPKIG00000018870	ENSPKIG00000018880	SLC30A8 (ENSPKIG00000018892)	med30 (ENSPKIG00000018912)	EXT1 (ENSPKIG00000018929)
Osteoglossiformes	ANCESTRAL SPECIES	6	ENSGT00940000160839.q	ENSGT00950000183051.a.a.b	ENSGT00920000149172	ENSGT00940000156446	ENSGT00940000160484	ENSGT00940000165015	ENSGT00510000051337	ENSGT00940000167743	ENSGT00390000004886	ENSGT00940000153979.B	ENSGT00940000166686	ENSGT00940000164984	ENSGT00940000157640.b	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.kb ##22	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a.jb ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621.v	ENSGT00390000018554	ENSGT00940000155549.a.a	ENSGT00940000157893	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a.i.b	ENSGT01030000235077	ENSGT00940000176888	ENSGT00940000160706	ENSGT00390000010887.a
P. kingsleyae	MODERN SPECIES	13															MTERF1 (ENSPKIG00000017556)	ENSPKIG00000017576 ##22	ENSPKIG00000017609 ##22	cyp51 (ENSPKIG00000017630)	ENSPKIG00000017712	krit1 (ENSPKIG00000017853)	ANKIB1 (ENSPKIG00000017957)	gatad1 (ENSPKIG00000018020)	CSMD3 (ENSPKIG00000018213)	trps1 (ENSPKIG00000018718)	eif3ha (ENSPKIG00000018742)	utp23 (ENSPKIG00000018790)	rad21b (ENSPKIG00000018829)	ENSPKIG00000018870	ENSPKIG00000018880	SLC30A8 (ENSPKIG00000018892)	med30 (ENSPKIG00000018912)
Spotted gar	MODERN SPECIES	649	olah (ENSLOCG00000010414)	nmt2 (ENSLOCG00000010423)	rpp38 (ENSLOCG00000018347)	FAM171A1 (ENSLOCG00000010436)	ITGA8 (ENSLOCG00000010450)	mindy3 (ENSLOCG00000010478)	ENSLOCG00000010489	ZNF804B (ENSLOCG00000010504)	steap4 (ENSLOCG00000010512)	sri (ENSLOCG00000010521)	dus3l (ENSLOCG00000010531)	ENSLOCG00000010541	cdk14 (ENSLOCG00000010548)	fzd1 (ENSLOCG00000010570)	MTERF1 (ENSLOCG00000018348)	ENSLOCG00000010582 ##22	cyp51 (ENSLOCG00000010601)	LRRD1 (ENSLOCG00000010613)	krit1 (ENSLOCG00000010622)	ANKIB1 (ENSLOCG00000010636)	gatad1 (ENSLOCG00000010654)	ENSLOCG00000010663	pex1 (ENSLOCG00000010675)	rbm48 (ENSLOCG00000010688)	efcab1 (ENSLOCG00000010700)	ENSLOCG00000010709	FAM133B (ENSLOCG00000010716)	cdk6 (ENSLOCG00000010732)	hepacam2 (ENSLOCG00000010740)	VPS50 (ENSLOCG00000010759)	CALCR (ENSLOCG00000010787)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	4	acbd7 (ENSECRG00000014146)	rpp38 (ENSECRG00000014122)	nmt2 (ENSECRG00000014060)	FAM171A1 (ENSECRG00000016543)	ITGA8 (ENSECRG00000015420)	mindy3 (ENSECRG00000015240)	ENSECRG00000015158	ENSECRG00000015116	ENSECRG00000015082	sri (ENSECRG00000015055)	dus3l (ENSECRG00000015018)	ENSECRG00000014996	cdk14 (ENSECRG00000014870)	fzd1 (ENSECRG00000014826)	MTERF1 (ENSECRG00000014815)	ENSECRG00000014796 ##22	ENSECRG00000014759 ##22	ANKIB1 (ENSECRG00000014652)	gatad1 (ENSECRG00000014582)	zgc:110410 (ENSECRG00000014454)	pex1 (ENSECRG00000014312)	rbm48 (ENSECRG00000014225)	efcab1 (ENSECRG00000014199)	ENSECRG00000014179	FAM133B (ENSECRG00000014152)	cdk6 (ENSECRG00000014116)	VPS50 (ENSECRG00000013875)	CALCR (ENSECRG00000013598)	tfpi2 (ENSECRG00000013528)	gngt1 (ENSECRG00000013513)	zgc:85777 (ENSECRG00000013496)
Reedfish	MODERN SPECIES	255																ENSECRG00000021060 ##22	cyp51 (ENSECRG00000021142)	LRRD1 (ENSECRG00000021643)	krit1 (ENSECRG00000021878)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	234									ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT01050000244890.b
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b
Sarcopterygii	ANCESTRAL SPECIES		ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT01050000244890.b	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	1639															MTERF1 (ENSLACG00000009880)	ENSLACG00000008123 ##22	ENSLACG00000005049 ##22	CYP51A1 (ENSLACG00000003840)	LRRD1 (ENSLACG00000003410)	KRIT1 (ENSLACG00000000620)
Coelacanth	MODERN SPECIES	1639														MTERF1 (ENSLACG00000009880)	ENSLACG00000008123 ##22	ENSLACG00000005049 ##22	CYP51A1 (ENSLACG00000003840)	LRRD1 (ENSLACG00000003410)	KRIT1 (ENSLACG00000000620)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00730000110871.a.a.b ##22
Reedfish	MODERN SPECIES	4	rpp38 (ENSECRG00000014122)	nmt2 (ENSECRG00000014060)	FAM171A1 (ENSECRG00000016543)	ITGA8 (ENSECRG00000015420)	mindy3 (ENSECRG00000015240)	ENSECRG00000015158	ENSECRG00000015116	ENSECRG00000015082	sri (ENSECRG00000015055)	dus3l (ENSECRG00000015018)	ENSECRG00000014996	cdk14 (ENSECRG00000014870)	fzd1 (ENSECRG00000014826)	MTERF1 (ENSECRG00000014815)	ENSECRG00000014796 ##22	ENSECRG00000014759 ##22	ANKIB1 (ENSECRG00000014652)	gatad1 (ENSECRG00000014582)	zgc:110410 (ENSECRG00000014454)	pex1 (ENSECRG00000014312)	rbm48 (ENSECRG00000014225)	efcab1 (ENSECRG00000014199)	ENSECRG00000014179	FAM133B (ENSECRG00000014152)	cdk6 (ENSECRG00000014116)	VPS50 (ENSECRG00000013875)	CALCR (ENSECRG00000013598)	tfpi2 (ENSECRG00000013528)	gngt1 (ENSECRG00000013513)	zgc:85777 (ENSECRG00000013496)	bet1 (ENSECRG00000013481)
Elephant shark	MODERN SPECIES	1541											cdk14 (ENSCMIG00000018395)	fzd1 (ENSCMIG00000018416)	MTERF1 (ENSCMIG00000018417)	LRRD1 (ENSCMIG00000018419)	ENSCMIG00000018427 ##22	ENSCMIG00000018431 ##22	ENSCMIG00000018455	cyp51 (ENSCMIG00000018475)	krit1 (ENSCMIG00000018508)	ENSCMIG00000018513	ANKIB1 (ENSCMIG00000018549)	gatad1 (ENSCMIG00000018630)	ENSCMIG00000018632	gpd1l (ENSCMIG00000018634)	cmtm8b (ENSCMIG00000018635)	cmtm7 (ENSCMIG00000018637)	ENSCMIG00000018639	dync1li1 (ENSCMIG00000018671)	ENSCMIG00000018790	TMEFF1 (ENSCMIG00000018817)	CAVIN4 (ENSCMIG00000018828)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b ##22
Amniota	ANCESTRAL SPECIES	7	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Mammalia	ANCESTRAL SPECIES	4	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Theria	ANCESTRAL SPECIES		ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Eutheria	ANCESTRAL SPECIES	1	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Primates	ANCESTRAL SPECIES	12	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00730000111097.f.a.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a	ENSGT00910000147819	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.e	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00910000147819	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.e	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00910000147819	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b.c	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640.g	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.e.a	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c.a	ENSGT00910000147819	ENSGT00390000004541.c.b	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b.c	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640.g	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.e.a	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c.a	ENSGT00390000004541.c.b	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Pan	ANCESTRAL SPECIES	13	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT01050000244891.A.j.a.b	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b.c	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640.g	ENSGT00940000162584	ENSGT00530000063817.a.m	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.e.a	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541.c.b	ENSGT00730000111097.f.a.b.b.a	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00950000182891.a.a.b.a.a.b	ENSGT00390000001627.f.b
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	20	SRI (ENSPTRG00000019376)	STEAP4 (ENSPTRG00000019377)	ENSPTRG00000044971	ZNF804B (ENSPTRG00000019378)	TEX47 (ENSPTRG00000019379)	STEAP1 (ENSPTRG00000019381)	STEAP2 (ENSPTRG00000019382)	CFAP69 (ENSPTRG00000019383)	FAM237B (ENSPTRG00000048899)	GTPBP10 (ENSPTRG00000019384)	ENSPTRG00000048558	ENSPTRG00000044080	CDK14 (ENSPTRG00000019387)	ENSPTRG00000045634	MTERF1 (ENSPTRG00000019388)	AKAP9 (ENSPTRG00000019389) ##22	CYP51A1 (ENSPTRG00000019391)	LRRD1 (ENSPTRG00000041391)	KRIT1 (ENSPTRG00000019393)	ANKIB1 (ENSPTRG00000019394)	GATAD1 (ENSPTRG00000019395)	PEX1 (ENSPTRG00000019396)	ENSPTRG00000043160	FAM133B (ENSPTRG00000045978)	CDK6 (ENSPTRG00000019400)	SAMD9 (ENSPTRG00000028504)	HEPACAM2 (ENSPTRG00000019402)	VPS50 (ENSPTRG00000019403)	CALCR (ENSPTRG00000019404)	ENSPTRG00000043809	ENSPTRG00000050332
Chimpanzee	MODERN SPECIES	564	ENSPTRG00000047340	ENSPTRG00000048692	ENSPTRG00000046206	ENSPTRG00000051066	ENSPTRG00000049080	ENSPTRG00000045749	ENSPTRG00000051985	ENSPTRG00000047406	ENSPTRG00000049983	ENSPTRG00000048897	ENSPTRG00000044079	ENSPTRG00000048293	ENSPTRG00000049348	ENSPTRG00000043808	ENSPTRG00000052592	ENSPTRG00000051308 ##22	ENSPTRG00000047976	ENSPTRG00000051323	ENSPTRG00000051349	ENSPTRG00000049382	ENSPTRG00000049637	ENSPTRG00000052557	RBM48 (ENSPTRG00000019397)
Bonobo	MODERN SPECIES	20	DBF4 (ENSPPAG00000021646)	ADAM22 (ENSPPAG00000029972)	SRI (ENSPPAG00000022232)	STEAP4 (ENSPPAG00000032582)	ENSPPAG00000011137	TEX47 (ENSPPAG00000000234)	ZNF804B (ENSPPAG00000030964)	STEAP1 (ENSPPAG00000025399)	STEAP2 (ENSPPAG00000012878)	CFAP69 (ENSPPAG00000029003)	FAM237B (ENSPPAG00000008969)	GTPBP10 (ENSPPAG00000027408)	ENSPPAG00000027922	CDK14 (ENSPPAG00000042761)	MTERF1 (ENSPPAG00000027361)	AKAP9 (ENSPPAG00000035764) ##22	CYP51A1 (ENSPPAG00000040915)	LRRD1 (ENSPPAG00000014062)	KRIT1 (ENSPPAG00000027231)	ANKIB1 (ENSPPAG00000030968)	PEX1 (ENSPPAG00000041612)	RBM48 (ENSPPAG00000038032)	ENSPPAG00000038105	ENSPPAG00000034434	ENSPPAG00000037081	VPS50 (ENSPPAG00000043615)	CALCR (ENSPPAG00000025678)	ENSPPAG00000007866	ENSPPAG00000034024	TFPI2 (ENSPPAG00000027780)	GNGT1 (ENSPPAG00000027641)
Human	MODERN SPECIES	19	ADAM22 (ENSG00000008277)	SRI (ENSG00000075142)	STEAP4 (ENSG00000127954)	ZNF804B (ENSG00000182348)	TEX47 (ENSG00000164645)	STEAP1 (ENSG00000164647)	STEAP2 (ENSG00000157214)	CFAP69 (ENSG00000105792)	FAM237B (ENSG00000283267)	GTPBP10 (ENSG00000105793)	CLDN12 (ENSG00000157224)	CDK14 (ENSG00000058091)	PTTG1IP2 (ENSG00000251154)	FZD1 (ENSG00000157240)	MTERF1 (ENSG00000127989)	AKAP9 (ENSG00000127914) ##22	CYP51A1 (ENSG00000001630)	ENSG00000285772	ENSG00000289027	LRRD1 (ENSG00000240720)	ENSG00000285953	KRIT1 (ENSG00000001631)	ANKIB1 (ENSG00000001629)	GATAD1 (ENSG00000157259)	ERVW-1 (ENSG00000242950)	PEX1 (ENSG00000127980)	RBM48 (ENSG00000127993)	FAM133B (ENSG00000234545)	CDK6 (ENSG00000105810)	SAMD9 (ENSG00000205413)	SAMD9L (ENSG00000177409)
Gorilla	MODERN SPECIES	20	DBF4 (ENSGGOG00000015538)	ADAM22 (ENSGGOG00000002042)	SRI (ENSGGOG00000000796)	STEAP4 (ENSGGOG00000013341)	ENSGGOG00000036974	TEX47 (ENSGGOG00000027057)	ZNF804B (ENSGGOG00000027270)	STEAP2 (ENSGGOG00000023101)	CFAP69 (ENSGGOG00000034860)	FAM237B (ENSGGOG00000037032)	GTPBP10 (ENSGGOG00000034985)	CLDN12 (ENSGGOG00000037636)	CDK14 (ENSGGOG00000003585)	FZD1 (ENSGGOG00000041639)	MTERF1 (ENSGGOG00000025995)	AKAP9 (ENSGGOG00000007412) ##22	CYP51A1 (ENSGGOG00000011496)	LRRD1 (ENSGGOG00000011266)	KRIT1 (ENSGGOG00000001906)	ANKIB1 (ENSGGOG00000006851)	ENSGGOG00000038174	GATAD1 (ENSGGOG00000023375)	PEX1 (ENSGGOG00000005076)	RBM48 (ENSGGOG00000041453)	ENSGGOG00000041366	FAM133B (ENSGGOG00000044152)	CDK6 (ENSGGOG00000025851)	SAMD9 (ENSGGOG00000026836)	HEPACAM2 (ENSGGOG00000002483)	VPS50 (ENSGGOG00000022699)	CALCR (ENSGGOG00000011549)
Orangutan	MODERN SPECIES	20	DBF4 (ENSPPYG00000017840)	ADAM22 (ENSPPYG00000017839)	SRI (ENSPPYG00000017838)	STEAP4 (ENSPPYG00000017837)	TEX47 (ENSPPYG00000017836)	ZNF804B (ENSPPYG00000017835)	ENSPPYG00000017834	STEAP2 (ENSPPYG00000017832)	CFAP69 (ENSPPYG00000017831)	FAM237B (ENSPPYG00000038754)	GTPBP10 (ENSPPYG00000017830)	CLDN12 (ENSPPYG00000017829)	CDK14 (ENSPPYG00000017828)	FZD1 (ENSPPYG00000017827)	MTERF1 (ENSPPYG00000017826)	AKAP9 (ENSPPYG00000017825) ##22	CYP51A1 (ENSPPYG00000017824)	LRRD1 (ENSPPYG00000034967)	KRIT1 (ENSPPYG00000017822)	ANKIB1 (ENSPPYG00000029404)	ENSPPYG00000032872	GATAD1 (ENSPPYG00000017821)	ERVW-1 (ENSPPYG00000039528)	PEX1 (ENSPPYG00000017820)	RBM48 (ENSPPYG00000017819)	FAM133B (ENSPPYG00000025825)	CDK6 (ENSPPYG00000017818)	SAMD9L (ENSPPYG00000017816)	HEPACAM2 (ENSPPYG00000017815)	VPS50 (ENSPPYG00000017814)	CALCR (ENSPPYG00000017813)
Gibbon	MODERN SPECIES	1	ADAM22 (ENSNLEG00000015048)	SRI (ENSNLEG00000015093)	STEAP4 (ENSNLEG00000015112)	ENSNLEG00000034572	ZNF804B (ENSNLEG00000015122)	TEX47 (ENSNLEG00000015120)	ENSNLEG00000015123	STEAP2 (ENSNLEG00000015126)	CFAP69 (ENSNLEG00000015135)	FAM237B (ENSNLEG00000035213)	GTPBP10 (ENSNLEG00000015162)	ENSNLEG00000027484	CLDN12 (ENSNLEG00000015168)	CDK14 (ENSNLEG00000015172)	MTERF1 (ENSNLEG00000015192)	AKAP9 (ENSNLEG00000015198) ##22	CYP51A1 (ENSNLEG00000015250)	LRRD1 (ENSNLEG00000015252)	KRIT1 (ENSNLEG00000015256)	ANKIB1 (ENSNLEG00000015287)	GATAD1 (ENSNLEG00000015297)	PEX1 (ENSNLEG00000015298)	RBM48 (ENSNLEG00000015330)	FAM133B (ENSNLEG00000015333)	CDK6 (ENSNLEG00000015335)	HEPACAM2 (ENSNLEG00000015343)	VPS50 (ENSNLEG00000015349)	CALCR (ENSNLEG00000015365)	TFPI2 (ENSNLEG00000034069)	GNGT1 (ENSNLEG00000015438)	GNG11 (ENSNLEG00000015439)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a.b	ENSGT00910000147819	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000011417.l
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a.b.a	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00690000102286.a.b.l	ENSGT00550000075032	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.b.a.b.b.a.a.a.b.a	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a.b.a	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b
Crab-eating macaque	MODERN SPECIES	13	ADAM22 (ENSMFAG00000001062)	SRI (ENSMFAG00000001735)	STEAP4 (ENSMFAG00000032562)	TEX47 (ENSMFAG00000064455)	ZNF804B (ENSMFAG00000044325)	ENSMFAG00000054162	ENSMFAG00000035452	STEAP2 (ENSMFAG00000045411)	CFAP69 (ENSMFAG00000034046)	FAM237B (ENSMFAG00000030670)	GTPBP10 (ENSMFAG00000020045)	CDK14 (ENSMFAG00000044994)	FZD1 (ENSMFAG00000032384)	ENSMFAG00000060585	MTERF1 (ENSMFAG00000038723)	AKAP9 (ENSMFAG00000028102) ##22	CYP51A1 (ENSMFAG00000041456)	ENSMFAG00000053304	LRRD1 (ENSMFAG00000032600)	ENSMFAG00000047381	KRIT1 (ENSMFAG00000033257)	ENSMFAG00000053045	ANKIB1 (ENSMFAG00000040224)	ENSMFAG00000056832	ENSMFAG00000057487	GATAD1 (ENSMFAG00000062009)	ERVW-1 (ENSMFAG00000065565)	ENSMFAG00000065408	PEX1 (ENSMFAG00000045505)	ENSMFAG00000060191	RBM48 (ENSMFAG00000029561)
Rhesus	MODERN SPECIES	13	DBF4 (ENSMMUG00000006771)	ADAM22 (ENSMMUG00000022695)	SRI (ENSMMUG00000022696)	STEAP4 (ENSMMUG00000022697)	TEX47 (ENSMMUG00000015684)	ENSMMUG00000054411	ZNF804B (ENSMMUG00000015685)	ENSMMUG00000011602	STEAP2 (ENSMMUG00000023653)	FAM237B (ENSMMUG00000056912)	CFAP69 (ENSMMUG00000023654)	GTPBP10 (ENSMMUG00000023656)	CLDN12 (ENSMMUG00000023657)	CDK14 (ENSMMUG00000007470)	MTERF1 (ENSMMUG00000015516)	AKAP9 (ENSMMUG00000002364) ##22	LRRD1 (ENSMMUG00000038731)	KRIT1 (ENSMMUG00000014907)	ANKIB1 (ENSMMUG00000005120)	GATAD1 (ENSMMUG00000010104)	ERVW-1 (ENSMMUG00000049959)	PEX1 (ENSMMUG00000040007)	ENSMMUG00000060636	RBM48 (ENSMMUG00000015534)	FAM133B (ENSMMUG00000019802)	CDK6 (ENSMMUG00000008698)	SAMD9 (ENSMMUG00000000170)	SAMD9L (ENSMMUG00000020803)	ENSMMUG00000053093	HEPACAM2 (ENSMMUG00000004456)	VPS50 (ENSMMUG00000017311)
Pig-tailed macaque	MODERN SPECIES	534	DBF4 (ENSMNEG00000038232)	ADAM22 (ENSMNEG00000043983)	SRI (ENSMNEG00000030067)	STEAP4 (ENSMNEG00000035786)	ZNF804B (ENSMNEG00000044734)	ENSMNEG00000035532	STEAP2 (ENSMNEG00000028663)	CFAP69 (ENSMNEG00000039081)	ENSMNEG00000016342	GTPBP10 (ENSMNEG00000044506)	ENSMNEG00000039982	CLDN12 (ENSMNEG00000023407)	CDK14 (ENSMNEG00000032203)	ENSMNEG00000005293	MTERF1 (ENSMNEG00000041445)	AKAP9 (ENSMNEG00000043025) ##22	CYP51A1 (ENSMNEG00000042062)	LRRD1 (ENSMNEG00000027250)	KRIT1 (ENSMNEG00000035084)	ANKIB1 (ENSMNEG00000028340)	GATAD1 (ENSMNEG00000034063)	PEX1 (ENSMNEG00000018881)	RBM48 (ENSMNEG00000039222)	ENSMNEG00000038815	CDK6 (ENSMNEG00000040700)	SAMD9 (ENSMNEG00000022873)	HEPACAM2 (ENSMNEG00000044752)	VPS50 (ENSMNEG00000041180)	CALCR (ENSMNEG00000043493)	TFPI2 (ENSMNEG00000042271)	GNGT1 (ENSMNEG00000043902)
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621.g	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.b	ENSGT00730000111097.f.a.b.a.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000011417.l
Olive baboon	MODERN SPECIES	14	ADAM22 (ENSPANG00000011718)	SRI (ENSPANG00000030997)	STEAP4 (ENSPANG00000021691)	ZNF804B (ENSPANG00000017284)	TEX47 (ENSPANG00000041284)	ENSPANG00000047873	STEAP1 (ENSPANG00000022337)	STEAP2 (ENSPANG00000024064)	CFAP69 (ENSPANG00000021186)	FAM237B (ENSPANG00000021692)	GTPBP10 (ENSPANG00000005830)	CLDN12 (ENSPANG00000011873)	CDK14 (ENSPANG00000022338)	FZD1 (ENSPANG00000002491)	MTERF1 (ENSPANG00000007445)	AKAP9 (ENSPANG00000000841) ##22	CYP51A1 (ENSPANG00000010214)	LRRD1 (ENSPANG00000024550)	KRIT1 (ENSPANG00000024548)	ANKIB1 (ENSPANG00000017286)	GATAD1 (ENSPANG00000006522)	PEX1 (ENSPANG00000021187)	RBM48 (ENSPANG00000020591)	ENSPANG00000035106	CDK6 (ENSPANG00000016091)	SAMD9 (ENSPANG00000011875)	SAMD9L (ENSPANG00000041195)	HEPACAM2 (ENSPANG00000021693)	VPS50 (ENSPANG00000009009)	CALCR (ENSPANG00000015889)	ENSPANG00000046613
Cercopithecinae_d	ANCESTRAL SPECIES	10															ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621.g	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00910000147819	ENSGT00730000111097.f.a.b.a.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000011417.l	ENSGT00390000003442
Drill	MODERN SPECIES	158															MTERF1 (ENSMLEG00000008543)	AKAP9 (ENSMLEG00000037840) ##22	CYP51A1 (ENSMLEG00000014471)	LRRD1 (ENSMLEG00000030878)	KRIT1 (ENSMLEG00000028550)	ENSMLEG00000028055
Sooty mangabey	MODERN SPECIES	402															MTERF1 (ENSCATG00000039620)	AKAP9 (ENSCATG00000029589) ##22	CYP51A1 (ENSCATG00000022606)	LRRD1 (ENSCATG00000020695)	KRIT1 (ENSCATG00000037615)	ANKIB1 (ENSCATG00000037023)	ENSCATG00000006492	GATAD1 (ENSCATG00000021259)	PEX1 (ENSCATG00000034557)	RBM48 (ENSCATG00000031691)	ENSCATG00000030758	ENSCATG00000028756	CDK6 (ENSCATG00000035974)	SAMD9 (ENSCATG00000014881)
Vervet Monkey	MODERN SPECIES	13	SLC25A40 (ENSCSAG00000012410)	DBF4 (ENSCSAG00000012420)	ADAM22 (ENSCSAG00000012435)	SRI (ENSCSAG00000012443)	STEAP4 (ENSCSAG00000012449)	TEX47 (ENSCSAG00000019125)	ZNF804B (ENSCSAG00000012457)	ENSCSAG00000012466	STEAP2 (ENSCSAG00000012473)	CFAP69 (ENSCSAG00000012484)	GTPBP10 (ENSCSAG00000012493)	CLDN12 (ENSCSAG00000019124)	CDK14 (ENSCSAG00000012501)	FZD1 (ENSCSAG00000019123)	MTERF1 (ENSCSAG00000012508)	AKAP9 (ENSCSAG00000012537) ##22	CYP51A1 (ENSCSAG00000012548)	LRRD1 (ENSCSAG00000012560)	KRIT1 (ENSCSAG00000012569)	ANKIB1 (ENSCSAG00000012579)	GATAD1 (ENSCSAG00000012585)	PEX1 (ENSCSAG00000012604)	RBM48 (ENSCSAG00000012609)	CDK6 (ENSCSAG00000012617)	SAMD9 (ENSCSAG00000019122)	SAMD9L (ENSCSAG00000019121)	HEPACAM2 (ENSCSAG00000012630)	VPS50 (ENSCSAG00000012652)	CALCR (ENSCSAG00000012713)	TFPI2 (ENSCSAG00000012736)	GNGT1 (ENSCSAG00000012737)
Rhinopithecus	ANCESTRAL SPECIES	288															ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541.c	ENSGT00730000111097.f.a.b.a.b	ENSGT00910000147819	ENSGT00730000111097.f.a.b.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000011417.l
Golden snub-nosed monkey	MODERN SPECIES	2862																AKAP9 (ENSRROG00000033745) ##22	CYP51A1 (ENSRROG00000028597)	LRRD1 (ENSRROG00000030215)	KRIT1 (ENSRROG00000021749)
Black snub-nosed monkey	MODERN SPECIES	1200															MTERF1 (ENSRBIG00000027323)	AKAP9 (ENSRBIG00000032033) ##22	CYP51A1 (ENSRBIG00000030107)	LRRD1 (ENSRBIG00000029628)
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00530000063909.b.q	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.g	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00730000111097.f.a.a	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.b	ENSGT01100000263525.b.b.a
Cebidae	ANCESTRAL SPECIES	9	ENSGT00530000063909.b.q	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.g	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00730000111097.f.a.a	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.b	ENSGT01100000263525.b.b.a
Cebidae_a	ANCESTRAL SPECIES	7	ENSGT00940000155287	ENSGT00940000159175	ENSGT00940000160249	ENSGT00530000063909.b.q	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.g	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00730000111097.f.a.a	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.b	ENSGT01100000263525.b.b.a
Bolivian squirrel monkey	MODERN SPECIES	44	ENSSBOG00000033659	ADAM22 (ENSSBOG00000034841)	ENSSBOG00000033141	ENSSBOG00000010968	SRI (ENSSBOG00000012640)	STEAP4 (ENSSBOG00000034157)	ENSSBOG00000006326	ZNF804B (ENSSBOG00000018086)	ENSSBOG00000030075	STEAP2 (ENSSBOG00000031505)	CFAP69 (ENSSBOG00000028540)	GTPBP10 (ENSSBOG00000034053)	ENSSBOG00000018560	CDK14 (ENSSBOG00000033241)	MTERF1 (ENSSBOG00000034146)	AKAP9 (ENSSBOG00000022508) ##22	CYP51A1 (ENSSBOG00000035232)	LRRD1 (ENSSBOG00000034443)	KRIT1 (ENSSBOG00000035485)	ANKIB1 (ENSSBOG00000023297)	PEX1 (ENSSBOG00000021711)	RBM48 (ENSSBOG00000021834)	ENSSBOG00000030993	CDK6 (ENSSBOG00000034944)	ENSSBOG00000021296	HEPACAM2 (ENSSBOG00000035736)	VPS50 (ENSSBOG00000035255)	CALCR (ENSSBOG00000033645)	TFPI2 (ENSSBOG00000023457)	GNGT1 (ENSSBOG00000030878)	GNG11 (ENSSBOG00000034498)
Capuchin	MODERN SPECIES	98	ENSCCAG00000014316	RUNDC3B (ENSCCAG00000036650)	SLC25A40 (ENSCCAG00000036682)	ENSCCAG00000037793	ADAM22 (ENSCCAG00000026545)	SRI (ENSCCAG00000026477)	STEAP4 (ENSCCAG00000026373)	ZNF804B (ENSCCAG00000019667)	ENSCCAG00000033073	STEAP2 (ENSCCAG00000025217)	CFAP69 (ENSCCAG00000018686)	GTPBP10 (ENSCCAG00000025362)	CLDN12 (ENSCCAG00000018810)	CDK14 (ENSCCAG00000028845)	MTERF1 (ENSCCAG00000026587)	AKAP9 (ENSCCAG00000022030) ##22	CYP51A1 (ENSCCAG00000020218)	LRRD1 (ENSCCAG00000020349)	KRIT1 (ENSCCAG00000011082)	ANKIB1 (ENSCCAG00000029252)	ENSCCAG00000020281	PEX1 (ENSCCAG00000027665)	RBM48 (ENSCCAG00000033867)	ENSCCAG00000029835	CDK6 (ENSCCAG00000032979)	BCKDHB (ENSCCAG00000027459)	TTK (ENSCCAG00000030838)	ELOVL4 (ENSCCAG00000033860)	SH3BGRL2 (ENSCCAG00000008769)	LCA5 (ENSCCAG00000021857)	HMGN3 (ENSCCAG00000028701)
Marmoset	MODERN SPECIES	20	ZNF804B (ENSCJAG00000014282)	ENSCJAG00000085323	ENSCJAG00000014277	STEAP2 (ENSCJAG00000014261)	CFAP69 (ENSCJAG00000014219)	FAM237B (ENSCJAG00000042068)	GTPBP10 (ENSCJAG00000014212)	CLDN12 (ENSCJAG00000023041)	ENSCJAG00000081571	CDK14 (ENSCJAG00000014175)	FZD1 (ENSCJAG00000039417)	ENSCJAG00000074055	ENSCJAG00000086152	ENSCJAG00000023040	MTERF1 (ENSCJAG00000014169)	AKAP9 (ENSCJAG00000014035) ##22	CYP51A1 (ENSCJAG00000014019)	LRRD1 (ENSCJAG00000014016)	KRIT1 (ENSCJAG00000014000)	ANKIB1 (ENSCJAG00000013964)	GATAD1 (ENSCJAG00000079684)	PEX1 (ENSCJAG00000013927)	RBM48 (ENSCJAG00000040481)	ENSCJAG00000039959	CDK6 (ENSCJAG00000043437)	ENSCJAG00000075520	ENSCJAG00000073782	ENSCJAG00000066447	HEPACAM2 (ENSCJAG00000013864)	VPS50 (ENSCJAG00000013774)	CALCR (ENSCJAG00000013758)
Mas night monkey	MODERN SPECIES	776	SLC25A40 (ENSANAG00000033214)	ENSANAG00000035490	ADAM22 (ENSANAG00000034950)	ENSANAG00000022466	STEAP4 (ENSANAG00000037956)	ZNF804B (ENSANAG00000035191)	ENSANAG00000019602	ENSANAG00000023207	ENSANAG00000022768	STEAP2 (ENSANAG00000029220)	CFAP69 (ENSANAG00000026248)	GTPBP10 (ENSANAG00000020267)	CLDN12 (ENSANAG00000019188)	CDK14 (ENSANAG00000034381)	MTERF1 (ENSANAG00000022640)	AKAP9 (ENSANAG00000035864) ##22	CYP51A1 (ENSANAG00000036665)	LRRD1 (ENSANAG00000029885)	KRIT1 (ENSANAG00000034244)	ANKIB1 (ENSANAG00000038408)	GATAD1 (ENSANAG00000037321)	PEX1 (ENSANAG00000032378)	RBM48 (ENSANAG00000033815)	ENSANAG00000038305	CDK6 (ENSANAG00000024969)	HEPACAM2 (ENSANAG00000021636)	VPS50 (ENSANAG00000030711)	CALCR (ENSANAG00000020655)	TFPI2 (ENSANAG00000035329)	GNGT1 (ENSANAG00000026204)	GNG11 (ENSANAG00000025570)
Tarsier	MODERN SPECIES	866														ENSTSYG00000007319	MTERF1 (ENSTSYG00000012629)	AKAP9 (ENSTSYG00000014331) ##22	CYP51A1 (ENSTSYG00000014341)
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Mouse lemur	MODERN SPECIES	2	DBF4 (ENSMICG00000030146)	ADAM22 (ENSMICG00000011473)	SRI (ENSMICG00000011498)	STEAP4 (ENSMICG00000011510)	ZNF804B (ENSMICG00000031570)	ENSMICG00000029816	ENSMICG00000008961	STEAP2 (ENSMICG00000006330)	CFAP69 (ENSMICG00000033992)	FAM237B (ENSMICG00000029340)	GTPBP10 (ENSMICG00000010172)	CLDN12 (ENSMICG00000047675)	CDK14 (ENSMICG00000010076)	ENSMICG00000026970	MTERF1 (ENSMICG00000046314)	AKAP9 (ENSMICG00000011654) ##22	CYP51A1 (ENSMICG00000002486)	LRRD1 (ENSMICG00000037045)	KRIT1 (ENSMICG00000032533)	ANKIB1 (ENSMICG00000015075)	ENSMICG00000036471	GATAD1 (ENSMICG00000033903)	PEX1 (ENSMICG00000015105)	ENSMICG00000034619	ENSMICG00000041777	FAM133B (ENSMICG00000029896)	ENSMICG00000035587	CDK6 (ENSMICG00000004219)	HEPACAM2 (ENSMICG00000012423)	VPS50 (ENSMICG00000012428)	CALCR (ENSMICG00000002792)
Lemuriformes_a	ANCESTRAL SPECIES	91					ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Coquerels sifaka	MODERN SPECIES	664															MTERF1 (ENSPCOG00000013179)	AKAP9 (ENSPCOG00000021835) ##22	CYP51A1 (ENSPCOG00000018779)	LRRD1 (ENSPCOG00000015248)	KRIT1 (ENSPCOG00000023463)	ANKIB1 (ENSPCOG00000013901)	GATAD1 (ENSPCOG00000019007)	PEX1 (ENSPCOG00000013509)	RBM48 (ENSPCOG00000026924)	FAM133B (ENSPCOG00000026015)	CDK6 (ENSPCOG00000025550)
Greater bamboo lemur	MODERN SPECIES	91					ZNF804B (ENSPSMG00000012388)	ENSPSMG00000012258	STEAP2 (ENSPSMG00000012250)	CFAP69 (ENSPSMG00000012211)	ENSPSMG00000012186	ENSPSMG00000012180	ENSPSMG00000012174	CLDN12 (ENSPSMG00000012146)	CDK14 (ENSPSMG00000012130)	FZD1 (ENSPSMG00000012063)	MTERF1 (ENSPSMG00000012061)	AKAP9 (ENSPSMG00000011881) ##22	CYP51A1 (ENSPSMG00000011408)	LRRD1 (ENSPSMG00000011390)	KRIT1 (ENSPSMG00000011362)	ANKIB1 (ENSPSMG00000011266)	ENSPSMG00000011221	GATAD1 (ENSPSMG00000011215)	PEX1 (ENSPSMG00000011155)	RBM48 (ENSPSMG00000011043)	ENSPSMG00000011026	FAM133B (ENSPSMG00000011002)	CDK6 (ENSPSMG00000010966)	ENSPSMG00000010943	SAMD9 (ENSPSMG00000010934)	HEPACAM2 (ENSPSMG00000010929)	VPS50 (ENSPSMG00000010744)
Bushbaby	MODERN SPECIES	120	SLC25A40 (ENSOGAG00000005706)	DBF4 (ENSOGAG00000005707)	ADAM22 (ENSOGAG00000005710)	ENSOGAG00000005718	STEAP4 (ENSOGAG00000005720)	TEX47 (ENSOGAG00000005447)	ZNF804B (ENSOGAG00000005442)	ENSOGAG00000016959	STEAP2 (ENSOGAG00000016963)	CFAP69 (ENSOGAG00000016965)	GTPBP10 (ENSOGAG00000010568)	CLDN12 (ENSOGAG00000010571)	CDK14 (ENSOGAG00000001681)	FZD1 (ENSOGAG00000026848)	MTERF1 (ENSOGAG00000001378)	AKAP9 (ENSOGAG00000001379) ##22	LRRD1 (ENSOGAG00000001383)	CYP51A1 (ENSOGAG00000001380)	KRIT1 (ENSOGAG00000010823)	ANKIB1 (ENSOGAG00000010828)	ENSOGAG00000031279	GATAD1 (ENSOGAG00000010833)	PEX1 (ENSOGAG00000010835)	RBM48 (ENSOGAG00000010843)	CDK6 (ENSOGAG00000034774)	SAMD9 (ENSOGAG00000027260)	HEPACAM2 (ENSOGAG00000000280)	VPS50 (ENSOGAG00000000281)	CALCR (ENSOGAG00000000282)	TFPI2 (ENSOGAG00000031399)	GNGT1 (ENSOGAG00000005065)
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Glires	ANCESTRAL SPECIES	18	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Cricetidae	DUPLICATION
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b.c ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Cricetinae	ANCESTRAL SPECIES	58	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b.c ##22
Chinese hamster chok1gshd	MODERN SPECIES	54	Steap4 (ENSCGRG00001019212)	Zfp804b (ENSCGRG00001000316)	Tex47 (ENSCGRG00001007269)	ENSCGRG00001008516	ENSCGRG00001014044	Steap1 (ENSCGRG00001014848)	Steap2 (ENSCGRG00001021321)	Cfap69 (ENSCGRG00001024480)	Gm8773 (ENSCGRG00001020130)	Gtpbp10 (ENSCGRG00001000101)	Cldn12 (ENSCGRG00001008509)	Pttg1ip2 (ENSCGRG00001016797)	Cdk14 (ENSCGRG00001018694)	Fzd1 (ENSCGRG00001020415)	ENSCGRG00001009716	Akap9 (ENSCGRG00001018336) ##22
Cricetidae_B	ANCESTRAL SPECIES	10														ENSGT00530000063817.a	ENSGT00730000110871.a.b.d ##22	ENSGT00730000110871.a.b.c ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Northern American deer mouse	MODERN SPECIES	16	Zfp804b (ENSPEMG00000010520)	Steap1 (ENSPEMG00000011064)	Steap2 (ENSPEMG00000008900)	Cfap69 (ENSPEMG00000007814)	Gm8773 (ENSPEMG00000025050)	Gtpbp10 (ENSPEMG00000009263)	Cldn12 (ENSPEMG00000029946)	Pttg1ip2 (ENSPEMG00000009217)	Cdk14 (ENSPEMG00000009698)	Fzd1 (ENSPEMG00000004940)	ENSPEMG00000028894	ENSPEMG00000028603	ENSPEMG00000002373	ENSPEMG00000013884	ENSPEMG00000017227 ##22	ENSPEMG00000030769 ##22	Cyp51 (ENSPEMG00000011646)	ENSPEMG00000028372	Lrrd1 (ENSPEMG00000015593)	Krit1 (ENSPEMG00000010538)	Ankib1 (ENSPEMG00000016309)	Tmbim7 (ENSPEMG00000016377)	ENSPEMG00000026596	Pex1 (ENSPEMG00000014258)	Rbm48 (ENSPEMG00000008284)	1700109H08Rik (ENSPEMG00000010299)	Fam133b (ENSPEMG00000010640)	Cdk6 (ENSPEMG00000015977)	ENSPEMG00000025166	ENSPEMG00000016169	Hepacam2 (ENSPEMG00000010816)
Cricetidae	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b.d ##22
Cricetidae_B	ANCESTRAL SPECIES	10															ENSGT00530000063817.a	ENSGT00730000110871.a.b.d ##22	ENSGT00730000110871.a.b.c ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000013287	Zfp804b (ENSPEMG00000010520)	Steap1 (ENSPEMG00000011064)	Steap2 (ENSPEMG00000008900)	Cfap69 (ENSPEMG00000007814)	Gm8773 (ENSPEMG00000025050)	Gtpbp10 (ENSPEMG00000009263)	Cldn12 (ENSPEMG00000029946)	Pttg1ip2 (ENSPEMG00000009217)	Cdk14 (ENSPEMG00000009698)	Fzd1 (ENSPEMG00000004940)	ENSPEMG00000028894	ENSPEMG00000028603	ENSPEMG00000002373	ENSPEMG00000013884	ENSPEMG00000017227 ##22	ENSPEMG00000030769 ##22	Cyp51 (ENSPEMG00000011646)	ENSPEMG00000028372	Lrrd1 (ENSPEMG00000015593)	Krit1 (ENSPEMG00000010538)	Ankib1 (ENSPEMG00000016309)	Tmbim7 (ENSPEMG00000016377)	ENSPEMG00000026596	Pex1 (ENSPEMG00000014258)	Rbm48 (ENSPEMG00000008284)	1700109H08Rik (ENSPEMG00000010299)	Fam133b (ENSPEMG00000010640)	Cdk6 (ENSPEMG00000015977)	ENSPEMG00000025166	ENSPEMG00000016169
Murinae	ANCESTRAL SPECIES	31	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026
Mus	ANCESTRAL SPECIES	24	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026
Mus_A	ANCESTRAL SPECIES	6	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026
Mus_B	ANCESTRAL SPECIES	4	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026
Mouse	MODERN SPECIES	14				V1rg10 (ENSMUSG00000098947)	Cdk6 (ENSMUSG00000040274)	Fam133b (ENSMUSG00000058503)	1700109H08Rik (ENSMUSG00000008307)	Rbm48 (ENSMUSG00000040302)	Pex1 (ENSMUSG00000005907)	Gatad1 (ENSMUSG00000007415)	Tmbim7 (ENSMUSG00000014529)	Ankib1 (ENSMUSG00000040351)	Krit1 (ENSMUSG00000000600)	Lrrd1 (ENSMUSG00000040367)	Mterf1a (ENSMUSG00000040429)	Akap9 (ENSMUSG00000040407) ##22	Cyp51 (ENSMUSG00000001467)	Mterf1b (ENSMUSG00000053178)	Fzd1 (ENSMUSG00000044674)	Cdk14 (ENSMUSG00000028926)	Pttg1ip2 (ENSMUSG00000079666)	Cldn12 (ENSMUSG00000046798)	Gtpbp10 (ENSMUSG00000040464)	Gm8773 (ENSMUSG00000073234)	Cfap69 (ENSMUSG00000040473)	Steap2 (ENSMUSG00000015653)	Steap1 (ENSMUSG00000015652)	Zfp804b (ENSMUSG00000092094)	Tex47 (ENSMUSG00000040514)	Steap4 (ENSMUSG00000012428)	Sri (ENSMUSG00000003161)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000160249	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026
Steppe mouse	MODERN SPECIES	2523						Fam133b (ENSMSIG00000008212)	1700109H08Rik (ENSMSIG00000008178)	Rbm48 (ENSMSIG00000008157)	Pex1 (ENSMSIG00000007723)	Gatad1 (ENSMSIG00000007708)	Tmbim7 (ENSMSIG00000007665)	Ankib1 (ENSMSIG00000007598)	Krit1 (ENSMSIG00000007461)	Lrrd1 (ENSMSIG00000007423)	ENSMSIG00000007394	Akap9 (ENSMSIG00000006726) ##22	Cyp51 (ENSMSIG00000006624)
spretus	MODERN SPECIES	14						MGP_SPRETEiJ_G0027924	Fam133b (MGP_SPRETEiJ_G0027925)	1700109H08Rik (MGP_SPRETEiJ_G0027926)	Rbm48 (MGP_SPRETEiJ_G0027927)	Pex1 (MGP_SPRETEiJ_G0027928)	Gatad1 (MGP_SPRETEiJ_G0027929)	Tmbim7 (MGP_SPRETEiJ_G0027930)	Ankib1 (MGP_SPRETEiJ_G0027931)	Krit1 (MGP_SPRETEiJ_G0027932)	Lrrd1 (MGP_SPRETEiJ_G0027933)	Akap9 (MGP_SPRETEiJ_G0027934) ##22	Cyp51 (MGP_SPRETEiJ_G0027935)	MGP_SPRETEiJ_G0027936	MGP_SPRETEiJ_G0027937	Fzd1 (MGP_SPRETEiJ_G0027938)	Cdk14 (MGP_SPRETEiJ_G0027939)	Pttg1ip2 (MGP_SPRETEiJ_G0027940)	Cldn12 (MGP_SPRETEiJ_G0027941)	MGP_SPRETEiJ_G0027942	Cfap69 (MGP_SPRETEiJ_G0027943)	Steap2 (MGP_SPRETEiJ_G0027944)	Steap1 (MGP_SPRETEiJ_G0027945)	Zfp804b (MGP_SPRETEiJ_G0027946)	Tex47 (MGP_SPRETEiJ_G0027947)	Steap4 (MGP_SPRETEiJ_G0027948)	Sri (MGP_SPRETEiJ_G0027949)
Ryukyu mouse	MODERN SPECIES	14						Cdk6 (MGP_CAROLIEiJ_G0026928)	Fam133b (MGP_CAROLIEiJ_G0026930)	1700109H08Rik (MGP_CAROLIEiJ_G0026931)	Rbm48 (MGP_CAROLIEiJ_G0026932)	Pex1 (MGP_CAROLIEiJ_G0026933)	Gatad1 (MGP_CAROLIEiJ_G0026934)	Tmbim7 (MGP_CAROLIEiJ_G0026935)	Ankib1 (MGP_CAROLIEiJ_G0026936)	Krit1 (MGP_CAROLIEiJ_G0026937)	MGP_CAROLIEiJ_G0026938	Akap9 (MGP_CAROLIEiJ_G0026939) ##22	Cyp51 (MGP_CAROLIEiJ_G0026940)	MGP_CAROLIEiJ_G0026941	MGP_CAROLIEiJ_G0026942	Fzd1 (MGP_CAROLIEiJ_G0026943)	Cdk14 (MGP_CAROLIEiJ_G0026944)	Pttg1ip2 (MGP_CAROLIEiJ_G0026945)	Cldn12 (MGP_CAROLIEiJ_G0026946)	Gtpbp10 (MGP_CAROLIEiJ_G0026947)	Cfap69 (MGP_CAROLIEiJ_G0026948)	Steap2 (MGP_CAROLIEiJ_G0026949)	Steap1 (MGP_CAROLIEiJ_G0026950)	Zfp804b (MGP_CAROLIEiJ_G0026951)	Tex47 (MGP_CAROLIEiJ_G0026952)	Steap4 (MGP_CAROLIEiJ_G0026953)	Sri (MGP_CAROLIEiJ_G0026954)
Shrew mouse	MODERN SPECIES	11		MGP_PahariEiJ_G0021700	MGP_PahariEiJ_G0021701	MGP_PahariEiJ_G0021702	Fam133b (MGP_PahariEiJ_G0021703)	1700109H08Rik (MGP_PahariEiJ_G0021704)	Rbm48 (MGP_PahariEiJ_G0021705)	Pex1 (MGP_PahariEiJ_G0021706)	Gatad1 (MGP_PahariEiJ_G0021707)	Tmbim7 (MGP_PahariEiJ_G0021708)	Ankib1 (MGP_PahariEiJ_G0021709)	Krit1 (MGP_PahariEiJ_G0021710)	Lrrd1 (MGP_PahariEiJ_G0021711)	MGP_PahariEiJ_G0021712	MGP_PahariEiJ_G0021713	Akap9 (MGP_PahariEiJ_G0021714) ##22	Cyp51 (MGP_PahariEiJ_G0021715)	Fzd1 (MGP_PahariEiJ_G0021716)	MGP_PahariEiJ_G0021717	Pttg1ip2 (MGP_PahariEiJ_G0021718)	Cldn12 (MGP_PahariEiJ_G0021719)	Gtpbp10 (MGP_PahariEiJ_G0021720)	Cfap69 (MGP_PahariEiJ_G0021721)	Steap2 (MGP_PahariEiJ_G0021722)	Steap1 (MGP_PahariEiJ_G0021723)	Zfp804b (MGP_PahariEiJ_G0021724)	Tex47 (MGP_PahariEiJ_G0021725)	Steap4 (MGP_PahariEiJ_G0021726)	Sri (MGP_PahariEiJ_G0021727)	Adam22 (MGP_PahariEiJ_G0021728)	MGP_PahariEiJ_G0021729
Rat	MODERN SPECIES	14	ENSRNOG00000063850	Golga3-ps1 (ENSRNOG00000061046)	ENSRNOG00000070481	ENSRNOG00000069815	Cdk6 (ENSRNOG00000009258)	Fam133b (ENSRNOG00000009163)	LOC500007 (ENSRNOG00000009135)	Rbm48 (ENSRNOG00000008980)	Pex1 (ENSRNOG00000025991)	Gatad1 (ENSRNOG00000008613)	Tmbim7 (ENSRNOG00000008585)	Ankib1 (ENSRNOG00000005502)	Krit1 (ENSRNOG00000007937)	Lrrd1 (ENSRNOG00000026196)	Mterf1 (ENSRNOG00000007899)	Akap9 (ENSRNOG00000026319) ##22	Cyp51 (ENSRNOG00000007234)	Fzd1 (ENSRNOG00000062541)	LOC102549548 (ENSRNOG00000039860)	Cdk14 (ENSRNOG00000007151)	Pttg1ip2 (ENSRNOG00000051419)	Cldn12 (ENSRNOG00000039862)	Gtpbp10 (ENSRNOG00000007098)	AC111647.1 (ENSRNOG00000039863)	Cfap69 (ENSRNOG00000006114)	Steap2 (ENSRNOG00000006076)	Steap1 (ENSRNOG00000000017)	ENSRNOG00000066438	ENSRNOG00000066396	Zfp804b (ENSRNOG00000031306)	Tex47 (ENSRNOG00000008594)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1798	Slc25a40 (ENSNGAG00000010840)	Dbf4 (ENSNGAG00000023393)	Adam22 (ENSNGAG00000010914)	Sri (ENSNGAG00000017434)	Steap4 (ENSNGAG00000009195)	Zfp804b (ENSNGAG00000016523)	Steap1 (ENSNGAG00000015937)	Steap2 (ENSNGAG00000007365)	Cfap69 (ENSNGAG00000022477)	Gtpbp10 (ENSNGAG00000013941)	Cldn12 (ENSNGAG00000015492)	Pttg1ip2 (ENSNGAG00000012730)	Cdk14 (ENSNGAG00000020791)	Fzd1 (ENSNGAG00000021608)	ENSNGAG00000014383	Akap9 (ENSNGAG00000024136) ##22	Cyp51 (ENSNGAG00000023930)	ENSNGAG00000023074	Lrrd1 (ENSNGAG00000020640)	ENSNGAG00000013213	Krit1 (ENSNGAG00000017207)	Ankib1 (ENSNGAG00000023377)	Tmbim7 (ENSNGAG00000022696)	ENSNGAG00000018462	Pex1 (ENSNGAG00000022685)	ENSNGAG00000023310	Fam133b (ENSNGAG00000021412)	Cdk6 (ENSNGAG00000019445)	ENSNGAG00000024174	Hepacam2 (ENSNGAG00000012448)	Vps50 (ENSNGAG00000021548)
Lesser Egyptian jerboa	MODERN SPECIES	59	Rsf1 (ENSJJAG00000016956)	ENSJJAG00000011302	Ints4 (ENSJJAG00000018661)	Kctd14 (ENSJJAG00000022138)	Ndufc2 (ENSJJAG00000014939)	Alg8 (ENSJJAG00000018486)	Usp35 (ENSJJAG00000013300)	Gab2 (ENSJJAG00000020223)	ENSJJAG00000011765	Nars2 (ENSJJAG00000015019)	Tenm4 (ENSJJAG00000011108)	Fzd1 (ENSJJAG00000012179)	ENSJJAG00000022231	ENSJJAG00000007047	ENSJJAG00000011811	Akap9 (ENSJJAG00000012874) ##22	Cyp51 (ENSJJAG00000022096)	Lrrd1 (ENSJJAG00000015021)	Krit1 (ENSJJAG00000022193)	Ankib1 (ENSJJAG00000004011)	Tmbim7 (ENSJJAG00000023877)	ENSJJAG00000021918	ENSJJAG00000021746	ENSJJAG00000023249	Pex1 (ENSJJAG00000023996)	Rbm48 (ENSJJAG00000000796)	Fam133b (ENSJJAG00000021611)	Cdk6 (ENSJJAG00000008543)	Hepacam2 (ENSJJAG00000016947)	Vps50 (ENSJJAG00000022304)	Calcr (ENSJJAG00000014172)
Kangaroo rat	MODERN SPECIES	409	Slc25a40 (ENSDORG00000009193)	Dbf4 (ENSDORG00000009196)	Adam22 (ENSDORG00000009198)	Sri (ENSDORG00000009204)	Steap4 (ENSDORG00000026829)	Zfp804b (ENSDORG00000025087)	Steap1 (ENSDORG00000013181)	Steap2 (ENSDORG00000002292)	Cfap69 (ENSDORG00000016665)	Gtpbp10 (ENSDORG00000015471)	Cldn12 (ENSDORG00000029347)	ENSDORG00000024371	Cdk14 (ENSDORG00000005957)	Fzd1 (ENSDORG00000005961)	ENSDORG00000028877	Akap9 (ENSDORG00000009658) ##22	ENSDORG00000014938	ENSDORG00000009661	Lrrd1 (ENSDORG00000023933)	Krit1 (ENSDORG00000012249)	Ankib1 (ENSDORG00000012252)	ENSDORG00000028009	ENSDORG00000023294	ENSDORG00000025025	ENSDORG00000024638	ENSDORG00000005900	1700109H08Rik (ENSDORG00000028925)	ENSDORG00000026255	ENSDORG00000026708	Cdk6 (ENSDORG00000023885)	Samd9l (ENSDORG00000023214)
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Hystricomorpha	ANCESTRAL SPECIES	14	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Hystricomorpha_a	ANCESTRAL SPECIES	43	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Hystricomorpha_b	ANCESTRAL SPECIES	62	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000167639	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Long-tailed chinchilla	MODERN SPECIES	139	DBF4 (ENSCLAG00000006005)	ADAM22 (ENSCLAG00000006649)	SRI (ENSCLAG00000004619)	STEAP4 (ENSCLAG00000004703)	ZNF804B (ENSCLAG00000006080)	TEX47 (ENSCLAG00000006145)	ENSCLAG00000006179	STEAP2 (ENSCLAG00000006262)	CFAP69 (ENSCLAG00000006387)	GTPBP10 (ENSCLAG00000006695)	CLDN12 (ENSCLAG00000006816)	ENSCLAG00000007061	FZD1 (ENSCLAG00000017832)	ENSCLAG00000007977	ENSCLAG00000008125	AKAP9 (ENSCLAG00000005332) ##22	CYP51A1 (ENSCLAG00000007702)	LRRD1 (ENSCLAG00000007851)	KRIT1 (ENSCLAG00000008236)	ANKIB1 (ENSCLAG00000003060)	ENSCLAG00000003268	ENSCLAG00000003315	ENSCLAG00000003685	PEX1 (ENSCLAG00000003719)	RBM48 (ENSCLAG00000003877)	ENSCLAG00000003974	FAM133B (ENSCLAG00000004241)	CDK6 (ENSCLAG00000004352)	SAMD9 (ENSCLAG00000017583)	SAMD9L (ENSCLAG00000017656)	HEPACAM2 (ENSCLAG00000007019)
Degu	MODERN SPECIES	303												ENSODEG00000000925	ENSODEG00000018693	ENSODEG00000000904	ENSODEG00000001578	AKAP9 (ENSODEG00000001339) ##22	CYP51A1 (ENSODEG00000001187)	ENSODEG00000001141	KRIT1 (ENSODEG00000001084)	ANKIB1 (ENSODEG00000001042)	ENSODEG00000000916	ENSODEG00000000896	PEX1 (ENSODEG00000001278)	ENSODEG00000001236	ENSODEG00000001167	CDK6 (ENSODEG00000001138)	ENSODEG00000001113	HEPACAM2 (ENSODEG00000001098)	VPS50 (ENSODEG00000001066)	CALCR (ENSODEG00000001037)	ENSODEG00000001006
Guinea pig	MODERN SPECIES	11	SLC25A40 (ENSCPOG00000037087)	DBF4 (ENSCPOG00000008286)	ADAM22 (ENSCPOG00000010085)	SRI (ENSCPOG00000010096)	STEAP4 (ENSCPOG00000010556)	ZNF804B (ENSCPOG00000010946)	ENSCPOG00000000897	STEAP2 (ENSCPOG00000000898)	CFAP69 (ENSCPOG00000022657)	GTPBP10 (ENSCPOG00000003608)	CLDN12 (ENSCPOG00000031610)	ENSCPOG00000030766	CDK14 (ENSCPOG00000010889)	FZD1 (ENSCPOG00000011031)	MTERF1 (ENSCPOG00000003510)	AKAP9 (ENSCPOG00000004854) ##22	CYP51A1 (ENSCPOG00000014594)	LRRD1 (ENSCPOG00000038117)	KRIT1 (ENSCPOG00000010013)	ANKIB1 (ENSCPOG00000004121)	ENSCPOG00000033133	ENSCPOG00000037153	ENSCPOG00000027317	ENSCPOG00000035569	PEX1 (ENSCPOG00000007366)	RBM48 (ENSCPOG00000007376)	ENSCPOG00000034236	FAM133B (ENSCPOG00000007584)	CDK6 (ENSCPOG00000030665)	SAMD9 (ENSCPOG00000040647)	SAMD9L (ENSCPOG00000015564)
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000043620	ZNF804B (ENSHGLG00000004228)	ENSHGLG00000033258	ENSHGLG00000004140	STEAP2 (ENSHGLG00000004036)	CFAP69 (ENSHGLG00000014643)	ENSHGLG00000050575	FAM237B (ENSHGLG00000032395)	GTPBP10 (ENSHGLG00000014579)	ENSHGLG00000048528	CLDN12 (ENSHGLG00000032369)	CDK14 (ENSHGLG00000017316)	ENSHGLG00000018138	FZD1 (ENSHGLG00000016691)	MTERF1 (ENSHGLG00000036452)	AKAP9 (ENSHGLG00000016663) ##22	CYP51A1 (ENSHGLG00000016647)	LRRD1 (ENSHGLG00000016636)	KRIT1 (ENSHGLG00000014048)	ANKIB1 (ENSHGLG00000013431)	GATAD1 (ENSHGLG00000013060)	PEX1 (ENSHGLG00000015029)	FAM133B (ENSHGLG00000014949)	ENSHGLG00000041177	CDK6 (ENSHGLG00000013892)	SAMD9 (ENSHGLG00000037413)	HEPACAM2 (ENSHGLG00000001360)	VPS50 (ENSHGLG00000001554)	CALCR (ENSHGLG00000001886)	TFPI2 (ENSHGLG00000042350)	GNGT1 (ENSHGLG00000001961)
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005013465	ENSSVLG00005013380	ENSSVLG00005013321	ENSSVLG00005013291	STEAP2 (ENSSVLG00005013213)	CFAP69 (ENSSVLG00005012961)	FAM237B (ENSSVLG00005012909)	ENSSVLG00005012852	ENSSVLG00005012805	GTPBP10 (ENSSVLG00005012737)	CLDN12 (ENSSVLG00005012697)	CDK14 (ENSSVLG00005012151)	MTERF1 (ENSSVLG00005011701)	ENSSVLG00005011626	ENSSVLG00005011448 ##22	ENSSVLG00005011211 ##22	CYP51A1 (ENSSVLG00005011134)	LRRD1 (ENSSVLG00005011038)	KRIT1 (ENSSVLG00005010706)	ANKIB1 (ENSSVLG00005010616)	ENSSVLG00005010488	GATAD1 (ENSSVLG00005010454)	PEX1 (ENSSVLG00005009996)	RBM48 (ENSSVLG00005009826)	ENSSVLG00005009771	ENSSVLG00005009641	CDK6 (ENSSVLG00005009594)	SAMD9 (ENSSVLG00005009567)	ENSSVLG00005009550	SAMD9L (ENSSVLG00005009536)	HEPACAM2 (ENSSVLG00005009314)
Eurasian red squirrel	MODERN SPECIES	17	ZNF804B (ENSSVLG00005013501)	ENSSVLG00005013465	ENSSVLG00005013380	ENSSVLG00005013321	ENSSVLG00005013291	STEAP2 (ENSSVLG00005013213)	CFAP69 (ENSSVLG00005012961)	FAM237B (ENSSVLG00005012909)	ENSSVLG00005012852	ENSSVLG00005012805	GTPBP10 (ENSSVLG00005012737)	CLDN12 (ENSSVLG00005012697)	CDK14 (ENSSVLG00005012151)	MTERF1 (ENSSVLG00005011701)	ENSSVLG00005011626	ENSSVLG00005011448 ##22	ENSSVLG00005011211 ##22	CYP51A1 (ENSSVLG00005011134)	LRRD1 (ENSSVLG00005011038)	KRIT1 (ENSSVLG00005010706)	ANKIB1 (ENSSVLG00005010616)	ENSSVLG00005010488	GATAD1 (ENSSVLG00005010454)	PEX1 (ENSSVLG00005009996)	RBM48 (ENSSVLG00005009826)	ENSSVLG00005009771	ENSSVLG00005009641	CDK6 (ENSSVLG00005009594)	SAMD9 (ENSSVLG00005009567)	ENSSVLG00005009550	SAMD9L (ENSSVLG00005009536)
Marmotini	ANCESTRAL SPECIES	35	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589.i	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT00940000154295.t	ENSGT01100000263551.b.b.b
Marmotini_b	ANCESTRAL SPECIES	66	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00900000143685	ENSGT00940000155589.i	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT00940000154295.t	ENSGT01100000263551.b.b.b
Squirrel	MODERN SPECIES	221						ENSSTOG00000023808	STEAP2 (ENSSTOG00000013165)	CFAP69 (ENSSTOG00000008182)	FAM237B (ENSSTOG00000021975)	GTPBP10 (ENSSTOG00000008220)	CLDN12 (ENSSTOG00000013464)	PTTG1IP2 (ENSSTOG00000030927)	CDK14 (ENSSTOG00000013466)	FZD1 (ENSSTOG00000013482)	MTERF1 (ENSSTOG00000001846)	AKAP9 (ENSSTOG00000006585) ##22	CYP51A1 (ENSSTOG00000006693)	KRIT1 (ENSSTOG00000022767)	ENSSTOG00000026145	EXOC3L4 (ENSSTOG00000004186)	ENSSTOG00000028490	ENSSTOG00000022018	EIF5 (ENSSTOG00000003683)	MARK3 (ENSSTOG00000009776)	CKB (ENSSTOG00000023632)	TRMT61A (ENSSTOG00000009792)	BAG5 (ENSSTOG00000027571)	COA8 (ENSSTOG00000019873)	KLC1 (ENSSTOG00000014074)	XRCC3 (ENSSTOG00000027100)	ZFYVE21 (ENSSTOG00000010336)
Alpin marmot	MODERN SPECIES	81	ADAM22 (ENSMMMG00000020682)	SRI (ENSMMMG00000020637)	STEAP4 (ENSMMMG00000020632)	TEX47 (ENSMMMG00000020626)	ENSMMMG00000020606	STEAP2 (ENSMMMG00000020585)	CFAP69 (ENSMMMG00000020526)	FAM237B (ENSMMMG00000020520)	ENSMMMG00000020515	GTPBP10 (ENSMMMG00000020487)	CLDN12 (ENSMMMG00000020483)	PTTG1IP2 (ENSMMMG00000020470)	CDK14 (ENSMMMG00000020433)	FZD1 (ENSMMMG00000020409)	MTERF1 (ENSMMMG00000020406)	AKAP9 (ENSMMMG00000019079) ##22	PAXIP1 (ENSMMMG00000019027)	HTR5A (ENSMMMG00000019020)	INSIG1 (ENSMMMG00000019001)	ENSMMMG00000018993	RBM33 (ENSMMMG00000018896)	ENSMMMG00000018886	RNF32 (ENSMMMG00000018872)	LMBR1 (ENSMMMG00000018812)	NOM1 (ENSMMMG00000018772)
Lagomorpha	ANCESTRAL SPECIES	50	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Rabbit	MODERN SPECIES	1	STEAP4 (ENSOCUG00000002574)	ENSOCUG00000005304	ENSOCUG00000036456	TEX47 (ENSOCUG00000028165)	ZNF804B (ENSOCUG00000013056)	ENSOCUG00000009088	STEAP2 (ENSOCUG00000014832)	CFAP69 (ENSOCUG00000014836)	GTPBP10 (ENSOCUG00000014847)	CLDN12 (ENSOCUG00000003284)	ENSOCUG00000032585	ENSOCUG00000009227	FZD1 (ENSOCUG00000003249)	ENSOCUG00000037344	MTERF1 (ENSOCUG00000010902)	AKAP9 (ENSOCUG00000004524) ##22	CYP51A1 (ENSOCUG00000004549)	LRRD1 (ENSOCUG00000004559)	KRIT1 (ENSOCUG00000004570)	ANKIB1 (ENSOCUG00000004576)	ENSOCUG00000013911	PEX1 (ENSOCUG00000008830)	GATAD1 (ENSOCUG00000014806)	ENSOCUG00000023961	ENSOCUG00000008475	FAM133B (ENSOCUG00000034985)	CDK6 (ENSOCUG00000011078)	SAMD9 (ENSOCUG00000020931)	SAMD9L (ENSOCUG00000000619)	HEPACAM2 (ENSOCUG00000000623)	VPS50 (ENSOCUG00000000625)
Pika	MODERN SPECIES	938																AKAP9 (ENSOPRG00000010287) ##22	CYP51A1 (ENSOPRG00000010377)	ENSOPRG00000010399	KRIT1 (ENSOPRG00000010412)	ANKIB1 (ENSOPRG00000010435)	GATAD1 (ENSOPRG00000010493)	PEX1 (ENSOPRG00000010506)	RBM48 (ENSOPRG00000010554)	CDK6 (ENSOPRG00000010585)
Tree shrew	MODERN SPECIES	1214															MTERF1 (ENSTBEG00000005760)	AKAP9 (ENSTBEG00000006070) ##22	CYP51A1 (ENSTBEG00000000773)
Laurasiatheria	ANCESTRAL SPECIES	22	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Eulipotyphla	ANCESTRAL SPECIES	533																ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427
Common shrew	MODERN SPECIES	1936																AKAP9 (ENSSARG00000000421) ##22	CYP51A1 (ENSSARG00000000460)	LRRD1 (ENSSARG00000000465)
Hedgehog	MODERN SPECIES	2611																AKAP9 (ENSEEUG00000006785) ##22	CYP51A1 (ENSEEUG00000007571)
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Suina	ANCESTRAL SPECIES	15	ENSGT00940000161381.e	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Pig	MODERN SPECIES	17	STEAP4 (ENSSSCG00000015299)	ZNF804B (ENSSSCG00000015300)	TEX47 (ENSSSCG00000021276)	STEAP1 (ENSSSCG00000015301)	ENSSSCG00000060200	ENSSSCG00000048369	STEAP2 (ENSSSCG00000015302)	CFAP69 (ENSSSCG00000061504)	FAM237B (ENSSSCG00000031091)	GTPBP10 (ENSSSCG00000015305)	CDK14 (ENSSSCG00000015307)	ENSSSCG00000015308	ENSSSCG00000050889	FZD1 (ENSSSCG00000036436)	MTERF1 (ENSSSCG00000015309)	AKAP9 (ENSSSCG00000015310) ##22	CYP51A1 (ENSSSCG00000015311)	LRRD1 (ENSSSCG00000029092)	ENSSSCG00000031827	KRIT1 (ENSSSCG00000015313)	ANKIB1 (ENSSSCG00000015314)	ENSSSCG00000027356	GATAD1 (ENSSSCG00000031835)	PEX1 (ENSSSCG00000029967)	RBM48 (ENSSSCG00000015315)	ENSSSCG00000015316	FAM133B (ENSSSCG00000045005)	CDK6 (ENSSSCG00000040183)	SAMD9 (ENSSSCG00000027372)	HEPACAM2 (ENSSSCG00000025870)	VPS50 (ENSSSCG00000022982)
Chacoan peccary	MODERN SPECIES	101															MTERF1 (ENSCWAG00000009888)	AKAP9 (ENSCWAG00000009828) ##22	CYP51A1 (ENSCWAG00000009742)	LRRD1 (ENSCWAG00000009671)	KRIT1 (ENSCWAG00000009526)	ANKIB1 (ENSCWAG00000009451)	ENSCWAG00000009391	GATAD1 (ENSCWAG00000009355)	PEX1 (ENSCWAG00000009188)	RBM48 (ENSCWAG00000009135)	ENSCWAG00000009104	FAM133B (ENSCWAG00000009061)	CDK6 (ENSCWAG00000009017)	SAMD9 (ENSCWAG00000008985)	HEPACAM2 (ENSCWAG00000008663)	VPS50 (ENSCWAG00000008316)	CALCR (ENSCWAG00000007914)
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00770000120611.B	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT01030000236316	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00990000214152	ENSGT00390000013973.A.a.d.a	ENSGT01000000219911	ENSGT01100000263551.b.b.b
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT01030000236316	ENSGT00530000063817.a	ENSGT00950000185980	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00390000007209.b	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00990000214152	ENSGT00390000013973.A.a.d.a	ENSGT01000000219911
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00950000185980	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00390000007209.b	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000157957	ENSGT00990000214152	ENSGT00390000013973.A.a.d.a	ENSGT01000000219911	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00940000172154	ENSGT00530000063817.a	ENSGT00950000185980	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00390000007209.b	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00990000214152.a	ENSGT00390000013973.A.a.d.a	ENSGT01000000219911
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00940000172154	ENSGT00530000063817.a	ENSGT00950000185980	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00990000214152.a	ENSGT00390000013973.A.a.d.a	ENSGT01000000219911	ENSGT01100000263551.b.b.b
Narwhal	MODERN SPECIES	306	SRI (ENSMMNG00015005495)	STEAP4 (ENSMMNG00015005473)	TEX47 (ENSMMNG00015005462)	ZNF804B (ENSMMNG00015005445)	ENSMMNG00015005430	STEAP2 (ENSMMNG00015005405)	CFAP69 (ENSMMNG00015005364)	FAM237B (ENSMMNG00015005334)	GTPBP10 (ENSMMNG00015005305)	CLDN12 (ENSMMNG00015005289)	CDK14 (ENSMMNG00015005199)	FZD1 (ENSMMNG00015009144)	ENSMMNG00015009137	MTERF1 (ENSMMNG00015009129)	ENSMMNG00015009125	AKAP9 (ENSMMNG00015008980) ##22	CYP51A1 (ENSMMNG00015008868)	LRRD1 (ENSMMNG00015008843)	KRIT1 (ENSMMNG00015008819)	ANKIB1 (ENSMMNG00015008796)	ENSMMNG00015008779	GATAD1 (ENSMMNG00015008767)	PEX1 (ENSMMNG00015008736)	RBM48 (ENSMMNG00015008704)	FAM133B (ENSMMNG00015008692)	ENSMMNG00015008676	CDK6 (ENSMMNG00015008661)	SAMD9 (ENSMMNG00015008647)	ENSMMNG00015008641	HEPACAM2 (ENSMMNG00015008607)	VPS50 (ENSMMNG00015008562)
Beluga whale	MODERN SPECIES	72	ADAM22 (ENSDLEG00000010449)	SRI (ENSDLEG00000015160)	STEAP4 (ENSDLEG00000015175)	TEX47 (ENSDLEG00000015183)	ZNF804B (ENSDLEG00000015198)	STEAP1 (ENSDLEG00000015209)	STEAP2 (ENSDLEG00000015229)	CFAP69 (ENSDLEG00000015282)	GTPBP10 (ENSDLEG00000015365)	CLDN12 (ENSDLEG00000015392)	CDK14 (ENSDLEG00000015432)	FZD1 (ENSDLEG00000015666)	ENSDLEG00000015680	MTERF1 (ENSDLEG00000015695)	ENSDLEG00000015707	AKAP9 (ENSDLEG00000016249) ##22	CYP51A1 (ENSDLEG00000021105)	LRRD1 (ENSDLEG00000021117)	KRIT1 (ENSDLEG00000021122)	ANKIB1 (ENSDLEG00000021143)	ENSDLEG00000021197	ENSDLEG00000021199	GATAD1 (ENSDLEG00000021201)	PEX1 (ENSDLEG00000021204)	RBM48 (ENSDLEG00000021208)	ENSDLEG00000021210	ENSDLEG00000021213	CDK6 (ENSDLEG00000021218)	ENSDLEG00000021219	SAMD9 (ENSDLEG00000021221)	ENSDLEG00000021223
Vaquita	MODERN SPECIES	20	ZNF804B (ENSPSNG00000018390)	TEX47 (ENSPSNG00000018435)	ENSPSNG00000018452	ENSPSNG00000018470	STEAP2 (ENSPSNG00000018541)	CFAP69 (ENSPSNG00000018648)	FAM237B (ENSPSNG00000018712)	GTPBP10 (ENSPSNG00000018749)	CLDN12 (ENSPSNG00000018814)	CDK14 (ENSPSNG00000018892)	FZD1 (ENSPSNG00000019150)	ENSPSNG00000019170	ENSPSNG00000019216	MTERF1 (ENSPSNG00000019232)	ENSPSNG00000019246	AKAP9 (ENSPSNG00000019395) ##22	CYP51A1 (ENSPSNG00000020081)	ENSPSNG00000020171	LRRD1 (ENSPSNG00000004171)	KRIT1 (ENSPSNG00000004239)	ANKIB1 (ENSPSNG00000004305)	ENSPSNG00000004342	GATAD1 (ENSPSNG00000004375)	PEX1 (ENSPSNG00000004442)	RBM48 (ENSPSNG00000004497)	FAM133B (ENSPSNG00000004517)	CDK6 (ENSPSNG00000004540)	ENSPSNG00000004558	SAMD9 (ENSPSNG00000004569)	ENSPSNG00000004583	HEPACAM2 (ENSPSNG00000004615)
Dolphin	MODERN SPECIES	208															MTERF1 (ENSTTRG00000010321)	AKAP9 (ENSTTRG00000010322) ##22	CYP51A1 (ENSTTRG00000010323)	ENSTTRG00000010324
Sperm whale	MODERN SPECIES	16	STEAP4 (ENSPCTG00005001543)	ZNF804B (ENSPCTG00005001559)	TEX47 (ENSPCTG00005001570)	ENSPCTG00005001582	STEAP1 (ENSPCTG00005001589)	STEAP2 (ENSPCTG00005001619)	CFAP69 (ENSPCTG00005001692)	FAM237B (ENSPCTG00005001743)	GTPBP10 (ENSPCTG00005001763)	CLDN12 (ENSPCTG00005001810)	CDK14 (ENSPCTG00005001848)	FZD1 (ENSPCTG00005001961)	ENSPCTG00005001969	MTERF1 (ENSPCTG00005001981)	ENSPCTG00005001990	AKAP9 (ENSPCTG00005002069) ##22	CYP51A1 (ENSPCTG00005002505)	ENSPCTG00005002542	LRRD1 (ENSPCTG00005002550)	KRIT1 (ENSPCTG00005002584)	ANKIB1 (ENSPCTG00005002678)	ENSPCTG00005002727	ENSPCTG00005002755	GATAD1 (ENSPCTG00005002769)	PEX1 (ENSPCTG00005002797)	RBM48 (ENSPCTG00005002870)	ENSPCTG00005002879	FAM133B (ENSPCTG00005002890)	CDK6 (ENSPCTG00005002898)	ENSPCTG00005002904	SAMD9 (ENSPCTG00005002911)
Blue whale	MODERN SPECIES	20	STEAP4 (ENSBMSG00010008231)	ENSBMSG00010008242	ZNF804B (ENSBMSG00010008247)	TEX47 (ENSBMSG00010008258)	ENSBMSG00010008271	ENSBMSG00010008279	STEAP2 (ENSBMSG00010008299)	CFAP69 (ENSBMSG00010008325)	FAM237B (ENSBMSG00010008370)	GTPBP10 (ENSBMSG00010008387)	CLDN12 (ENSBMSG00010008468)	CDK14 (ENSBMSG00010008514)	FZD1 (ENSBMSG00010008589)	ENSBMSG00010008597	MTERF1 (ENSBMSG00010008604)	AKAP9 (ENSBMSG00010008663) ##22	CYP51A1 (ENSBMSG00010008777)	LRRD1 (ENSBMSG00010008796)	KRIT1 (ENSBMSG00010008817)	ANKIB1 (ENSBMSG00010008835)	ENSBMSG00010008854	GATAD1 (ENSBMSG00010008879)	PEX1 (ENSBMSG00010008909)	RBM48 (ENSBMSG00010008940)	FAM133B (ENSBMSG00010008958)	CDK6 (ENSBMSG00010008966)	ENSBMSG00010008978	SAMD9 (ENSBMSG00010008986)	ENSBMSG00010008988	HEPACAM2 (ENSBMSG00010009004)	VPS50 (ENSBMSG00010009077)
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Yarkand deer	MODERN SPECIES	9	DDC (ENSCHYG00000006678)	FIGNL1 (ENSCHYG00000006868)	IKZF1 (ENSCHYG00000006910)	SPATA48 (ENSCHYG00000007188)	ZPBP (ENSCHYG00000007248)	VWC2 (ENSCHYG00000007286)	ABCA13 (ENSCHYG00000007359)	ENSCHYG00000008070	ENSCHYG00000008088	C7orf57 (ENSCHYG00000008147)	SUN3 (ENSCHYG00000008183)	CDK14 (ENSCHYG00000008319)	ENSCHYG00000008788	FZD1 (ENSCHYG00000008807)	MTERF1 (ENSCHYG00000008983)	AKAP9 (ENSCHYG00000009048) ##22	CYP51A1 (ENSCHYG00000009800)	LRRD1 (ENSCHYG00000009941)	KRIT1 (ENSCHYG00000010032)	ENSCHYG00000010159	ANKIB1 (ENSCHYG00000010181)	ENSCHYG00000010319	PEX1 (ENSCHYG00000010398)	RBM48 (ENSCHYG00000010605)	ENSCHYG00000010713	FAM133B (ENSCHYG00000010767)	CDK6 (ENSCHYG00000010888)	SAMD9 (ENSCHYG00000010983)	HEPACAM2 (ENSCHYG00000011024)	ENSCHYG00000011212	VPS50 (ENSCHYG00000011303)
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Siberian musk deer	MODERN SPECIES	1158				VWC2 (ENSMMSG00000021801)	ENSMMSG00000021787	ENSMMSG00000021773	ABCA13 (ENSMMSG00000021204)	UPP1 (ENSMMSG00000021105)	C7orf57 (ENSMMSG00000021077)	SUN3 (ENSMMSG00000021005)	CLDN12 (ENSMMSG00000020990)	ENSMMSG00000020983	CDK14 (ENSMMSG00000020826)	FZD1 (ENSMMSG00000020757)	MTERF1 (ENSMMSG00000020744)	AKAP9 (ENSMMSG00000020281) ##22	CYP51A1 (ENSMMSG00000020171)	LRRD1 (ENSMMSG00000020133)	KRIT1 (ENSMMSG00000020021)	ANKIB1 (ENSMMSG00000019956)	ENSMMSG00000019923	GATAD1 (ENSMMSG00000019893)	PEX1 (ENSMMSG00000019776)	RBM48 (ENSMMSG00000019723)	ENSMMSG00000019693	FAM133B (ENSMMSG00000019652)	CDK6 (ENSMMSG00000019610)	SAMD9 (ENSMMSG00000019591)	HEPACAM2 (ENSMMSG00000019537)	VPS50 (ENSMMSG00000019320)	CALCR (ENSMMSG00000019186)
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00950000183198.c.a.b.b	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00940000163089.b.w	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b
Bos	ANCESTRAL SPECIES	8	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f.q.a	ENSGT00940000157957	ENSGT00940000163089.b.w	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Bos_a	ANCESTRAL SPECIES	62	ENSGT00530000063608.A	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f.q.a	ENSGT00940000157957	ENSGT00940000163089.b.w	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442.o
Domestic yak	MODERN SPECIES	23	GRB10 (ENSBGRG00000022221)	DDC (ENSBGRG00000021949)	FIGNL1 (ENSBGRG00000021916)	IKZF1 (ENSBGRG00000021550)	SPATA48 (ENSBGRG00000021431)	ZPBP (ENSBGRG00000021319)	VWC2 (ENSBGRG00000021289)	UPP1 (ENSBGRG00000021024)	C7orf57 (ENSBGRG00000020879)	SUN3 (ENSBGRG00000020775)	CLDN12 (ENSBGRG00000020741)	ENSBGRG00000020701	CDK14 (ENSBGRG00000019992)	FZD1 (ENSBGRG00000019940)	MTERF1 (ENSBGRG00000019825)	AKAP9 (ENSBGRG00000019580) ##22	CYP51A1 (ENSBGRG00000019342)	LRRD1 (ENSBGRG00000019219)	KRIT1 (ENSBGRG00000019003)	ENSBGRG00000018969	ANKIB1 (ENSBGRG00000018778)	ENSBGRG00000018687	GATAD1 (ENSBGRG00000018643)	ENSBGRG00000018625	PEX1 (ENSBGRG00000017448)	RBM48 (ENSBGRG00000017280)	ENSBGRG00000017195	ENSBGRG00000017026	CDK6 (ENSBGRG00000016959)	ENSBGRG00000016911	SAMD9 (ENSBGRG00000016732)
Wild yak	MODERN SPECIES	2300															MTERF1 (ENSBMUG00000002426)	AKAP9 (ENSBMUG00000002473) ##22	CYP51A1 (ENSBMUG00000002513)	LRRD1 (ENSBMUG00000002539)	KRIT1 (ENSBMUG00000002596)	ANKIB1 (ENSBMUG00000002627)	ENSBMUG00000002644
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00950000183198.c.a.b.b	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f.q.a	ENSGT00940000157957	ENSGT00940000163089.b.w	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Hybrid Bos Indicus	MODERN SPECIES	23	FIGNL1 (ENSBIXG00005006997)	ENSBIXG00005001089	IKZF1 (ENSBIXG00005011552)	SPATA48 (ENSBIXG00005011646)	ZPBP (ENSBIXG00005011660)	VWC2 (ENSBIXG00005011683)	ABCA13 (ENSBIXG00005001167)	ENSBIXG00005011865	C7orf57 (ENSBIXG00005011885)	SUN3 (ENSBIXG00005001205)	CLDN12 (ENSBIXG00005011952)	ENSBIXG00005011969	CDK14 (ENSBIXG00005012122)	FZD1 (ENSBIXG00005012175)	MTERF1 (ENSBIXG00005001262)	AKAP9 (ENSBIXG00005007262) ##22	CYP51A1 (ENSBIXG00005012409)	LRRD1 (ENSBIXG00005012447)	KRIT1 (ENSBIXG00005000332)	ENSBIXG00005012526	ANKIB1 (ENSBIXG00005012609)	ENSBIXG00005012667	GATAD1 (ENSBIXG00005012696)	PEX1 (ENSBIXG00005012776)	RBM48 (ENSBIXG00005001426)	ENSBIXG00005012853	ENSBIXG00005001432	CDK6 (ENSBIXG00005012910)	ENSBIXG00005012932	HEPACAM2 (ENSBIXG00005013097)	VPS50 (ENSBIXG00005007486)
Cow	MODERN SPECIES	23	GRB10 (ENSBTAG00000017086)	DDC (ENSBTAG00000020869)	FIGNL1 (ENSBTAG00000001500)	IKZF1 (ENSBTAG00000014016)	SPATA48 (ENSBTAG00000043955)	ZPBP (ENSBTAG00000005499)	VWC2 (ENSBTAG00000044068)	ABCA13 (ENSBTAG00000003531)	UPP1 (ENSBTAG00000008428)	C4H7orf57 (ENSBTAG00000035064)	SUN3 (ENSBTAG00000008155)	CDK14 (ENSBTAG00000048664)	FZD1 (ENSBTAG00000002107)	ENSBTAG00000027319	MTERF1 (ENSBTAG00000045617)	AKAP9 (ENSBTAG00000007442) ##22	CYP51A1 (ENSBTAG00000001992)	LRRD1 (ENSBTAG00000001571)	KRIT1 (ENSBTAG00000002750)	ANKIB1 (ENSBTAG00000034936)	ENSBTAG00000051645	ENSBTAG00000048169	TMBIM7 (ENSBTAG00000034905)	GATAD1 (ENSBTAG00000021996)	PEX1 (ENSBTAG00000024431)	RBM48 (ENSBTAG00000018363)	ENSBTAG00000003810	FAM133B (ENSBTAG00000050705)	CDK6 (ENSBTAG00000044023)	ENSBTAG00000051416	HEPACAM2 (ENSBTAG00000012456)
American bison	MODERN SPECIES	3058												CDK14 (ENSBBBG00000017590)	FZD1 (ENSBBBG00000017616)	ENSBBBG00000004361	MTERF1 (ENSBBBG00000017623)	AKAP9 (ENSBBBG00000017684) ##22	CYP51A1 (ENSBBBG00000017712)	LRRD1 (ENSBBBG00000017736)	KRIT1 (ENSBBBG00000017846)	ENSBBBG00000007312	ANKIB1 (ENSBBBG00000017882)	ENSBBBG00000017893	GATAD1 (ENSBBBG00000017906)	PEX1 (ENSBBBG00000018033)	RBM48 (ENSBBBG00000018046)	ENSBBBG00000018052	ENSBBBG00000018080	CDK6 (ENSBBBG00000018101)	ENSBBBG00000004450	SAMD9 (ENSBBBG00000004453)	HEPACAM2 (ENSBBBG00000008936)
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000155909	ENSGT00940000156004	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	20	IKZF1 (ENSOARG00020009431)	SPATA48 (ENSOARG00020009747)	ZPBP (ENSOARG00020009859)	VWC2 (ENSOARG00020010544)	ENSOARG00020010632	ENSOARG00020010705	ABCA13 (ENSOARG00020010832)	ENSOARG00020012441	UPP1 (ENSOARG00020012494)	C7orf57 (ENSOARG00020012531)	SUN3 (ENSOARG00020012580)	CLDN12 (ENSOARG00020012741)	CDK14 (ENSOARG00020012786)	FZD1 (ENSOARG00020013139)	MTERF1 (ENSOARG00020013164)	ENSOARG00020013209 ##22	CYP51A1 (ENSOARG00020014080)	LRRD1 (ENSOARG00020014202)	KRIT1 (ENSOARG00020014318)	ANKIB1 (ENSOARG00020014492)	ENSOARG00020014775	GATAD1 (ENSOARG00020014878)	PEX1 (ENSOARG00020014937)	RBM48 (ENSOARG00020015448)	ENSOARG00020015522	FAM133B (ENSOARG00020015586)	CDK6 (ENSOARG00020015641)	ENSOARG00020015721	SAMD9 (ENSOARG00020015800)	ENSOARG00020016201	VPS50 (ENSOARG00020016589)
Rambouillet Sheep	MODERN SPECIES	20	ELMO1 (ENSOARG00020003116)	GPR141 (ENSOARG00020003064)	THAP5 (ENSOARG00020003037)	DNAJB9 (ENSOARG00020003016)	ENSOARG00020002993	LRRN3 (ENSOARG00020002986)	IMMP2L (ENSOARG00020002972)	DOCK4 (ENSOARG00020002182)	ZNF277 (ENSOARG00020002033)	IFRD1 (ENSOARG00020001965)	LSMEM1 (ENSOARG00020001907)	TMEM168 (ENSOARG00020001882)	BMT2 (ENSOARG00020001855)	GPR85 (ENSOARG00020001848)	SMIM30 (ENSOARG00020001844)	ENSOARG00020001818 ##22	PPP1R3A (ENSOARG00020001807)	FOXP2 (ENSOARG00020001223)	MDFIC (ENSOARG00020001137)	TFEC (ENSOARG00020001041)	TES (ENSOARG00020000994)	CAV2 (ENSOARG00020000978)	CAV1 (ENSOARG00020000956)	MET (ENSOARG00020000868)	ENSOARG00020000812	ST7 (ENSOARG00020000287)	WNT2 (ENSOARG00020000160)	ASZ1 (ENSOARG00020000134)	CFTR (ENSOARG00020016363)	CTTNBP2 (ENSOARG00020016233)	ENSOARG00020016185
Goat	MODERN SPECIES	23	FIGNL1 (ENSCHIG00000005867)	IKZF1 (ENSCHIG00000018797)	SPATA48 (ENSCHIG00000015201)	ZPBP (ENSCHIG00000008321)	VWC2 (ENSCHIG00000020940)	ENSCHIG00000008014	ABCA13 (ENSCHIG00000020126)	UPP1 (ENSCHIG00000014663)	C7orf57 (ENSCHIG00000013490)	SUN3 (ENSCHIG00000026852)	ENSCHIG00000005960	CLDN12 (ENSCHIG00000000615)	CDK14 (ENSCHIG00000004524)	FZD1 (ENSCHIG00000012408)	MTERF1 (ENSCHIG00000013172)	AKAP9 (ENSCHIG00000015192) ##22	CYP51A1 (ENSCHIG00000009890)	LRRD1 (ENSCHIG00000018885)	ENSCHIG00000010640	KRIT1 (ENSCHIG00000023971)	ANKIB1 (ENSCHIG00000026782)	ENSCHIG00000021464	GATAD1 (ENSCHIG00000006633)	PEX1 (ENSCHIG00000027266)	RBM48 (ENSCHIG00000015110)	ENSCHIG00000021463	ENSCHIG00000025157	CDK6 (ENSCHIG00000011604)	SAMD9 (ENSCHIG00000007683)	ENSCHIG00000012415	HEPACAM2 (ENSCHIG00000008983)
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Arabian camel	MODERN SPECIES	33	SRI (ENSCDRG00005022005)	STEAP4 (ENSCDRG00005022009)	ZNF804B (ENSCDRG00005022011)	TEX47 (ENSCDRG00005022012)	ENSCDRG00005022015	STEAP2 (ENSCDRG00005022018)	CFAP69 (ENSCDRG00005022021)	FAM237B (ENSCDRG00005022023)	GTPBP10 (ENSCDRG00005022026)	ENSCDRG00005022029	CLDN12 (ENSCDRG00005022031)	CDK14 (ENSCDRG00005022033)	FZD1 (ENSCDRG00005022038)	ENSCDRG00005022040	MTERF1 (ENSCDRG00005022042)	AKAP9 (ENSCDRG00005022051) ##22	CYP51A1 (ENSCDRG00005022091)	LRRD1 (ENSCDRG00005022094)	KRIT1 (ENSCDRG00005022098)	ANKIB1 (ENSCDRG00005000061)	ENSCDRG00005000081	ENSCDRG00005000099	PEX1 (ENSCDRG00005000200)	RBM48 (ENSCDRG00005000519)	ENSCDRG00005000541	FAM133B (ENSCDRG00005000566)	CDK6 (ENSCDRG00005000596)	ENSCDRG00005000621	HEPACAM2 (ENSCDRG00005000646)	VPS50 (ENSCDRG00005000733)	CALCR (ENSCDRG00005000927)
Alpaca	MODERN SPECIES	276															MTERF1 (ENSVPAG00000005202)	AKAP9 (ENSVPAG00000005203) ##22	CYP51A1 (ENSVPAG00000005207)	ENSVPAG00000005208
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000156889	ENSGT00940000153979.B.h	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000156889	ENSGT00940000153979.B.h	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Ursus	DUPLICATION
Ursus	ANCESTRAL SPECIES	54	ENSGT00940000156889	ENSGT00940000153979.B.h	ENSGT00390000008042.B	ENSGT00390000016972.a.a.b.b.b.a.b	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b.i ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	132	DBF4 (ENSUMAG00000017440)	ADAM22 (ENSUMAG00000017571)	STEAP4 (ENSUMAG00000018462)	ENSUMAG00000018483	TEX47 (ENSUMAG00000018502)	ENSUMAG00000018527	STEAP2 (ENSUMAG00000018534)	CFAP69 (ENSUMAG00000018562)	FAM237B (ENSUMAG00000018592)	GTPBP10 (ENSUMAG00000018594)	ENSUMAG00000018598	CDK14 (ENSUMAG00000018611)	FZD1 (ENSUMAG00000018631)	MTERF1 (ENSUMAG00000018642)	ENSUMAG00000018661 ##22	ENSUMAG00000018794 ##22	CYP51A1 (ENSUMAG00000018983)	LRRD1 (ENSUMAG00000018987)	KRIT1 (ENSUMAG00000018995)	ANKIB1 (ENSUMAG00000019015)	ENSUMAG00000019021	ENSUMAG00000019033	PEX1 (ENSUMAG00000019043)	RBM48 (ENSUMAG00000019063)	ENSUMAG00000019067	ENSUMAG00000019075	CDK6 (ENSUMAG00000019087)	SAMD9L (ENSUMAG00000019118)	HEPACAM2 (ENSUMAG00000019120)	VPS50 (ENSUMAG00000019183)	CALCR (ENSUMAG00000019707)
Polar bear	MODERN SPECIES	132	SLC25A40 (ENSUMAG00000017422)	DBF4 (ENSUMAG00000017440)	ADAM22 (ENSUMAG00000017571)	STEAP4 (ENSUMAG00000018462)	ENSUMAG00000018483	TEX47 (ENSUMAG00000018502)	ENSUMAG00000018527	STEAP2 (ENSUMAG00000018534)	CFAP69 (ENSUMAG00000018562)	FAM237B (ENSUMAG00000018592)	GTPBP10 (ENSUMAG00000018594)	ENSUMAG00000018598	CDK14 (ENSUMAG00000018611)	FZD1 (ENSUMAG00000018631)	MTERF1 (ENSUMAG00000018642)	ENSUMAG00000018661 ##22	ENSUMAG00000018794 ##22	CYP51A1 (ENSUMAG00000018983)	LRRD1 (ENSUMAG00000018987)	KRIT1 (ENSUMAG00000018995)	ANKIB1 (ENSUMAG00000019015)	ENSUMAG00000019021	ENSUMAG00000019033	PEX1 (ENSUMAG00000019043)	RBM48 (ENSUMAG00000019063)	ENSUMAG00000019067	ENSUMAG00000019075	CDK6 (ENSUMAG00000019087)	SAMD9L (ENSUMAG00000019118)	HEPACAM2 (ENSUMAG00000019120)	VPS50 (ENSUMAG00000019183)
American black bear	MODERN SPECIES	7648																ENSUAMG00000001164 ##22
Ursus	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b.j ##22
American black bear	MODERN SPECIES	1497															MTERF1 (ENSUAMG00000022225)	ENSUAMG00000020533 ##22
Giant Panda	MODERN SPECIES		DBF4 (ENSAMEG00000001199)	ADAM22 (ENSAMEG00000001215)	SRI (ENSAMEG00000001277)	STEAP4 (ENSAMEG00000001290)	ZNF804B (ENSAMEG00000011232)	TEX47 (ENSAMEG00000019896)	ENSAMEG00000011251	STEAP2 (ENSAMEG00000011257)	CFAP69 (ENSAMEG00000011265)	FAM237B (ENSAMEG00000030958)	GTPBP10 (ENSAMEG00000011273)	CLDN12 (ENSAMEG00000018833)	CDK14 (ENSAMEG00000000723)	ENSAMEG00000025892	FZD1 (ENSAMEG00000019295)	AKAP9 (ENSAMEG00000005758) ##22	CYP51A1 (ENSAMEG00000005722)	LRRD1 (ENSAMEG00000005721)	KRIT1 (ENSAMEG00000005677)	ANKIB1 (ENSAMEG00000005652)	ENSAMEG00000005647	GATAD1 (ENSAMEG00000005644)	PEX1 (ENSAMEG00000002049)	RBM48 (ENSAMEG00000002033)	ENSAMEG00000002030	FAM133B (ENSAMEG00000007438)	CDK6 (ENSAMEG00000017811)	SAMD9L (ENSAMEG00000019309)	HEPACAM2 (ENSAMEG00000017795)	VPS50 (ENSAMEG00000017766)	CALCR (ENSAMEG00000017747)
Mustelinae	ANCESTRAL SPECIES	46	ENSGT00940000156889	ENSGT00940000153979.B.h	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Ferret	MODERN SPECIES	394													ENSMPUG00000008581	FZD1 (ENSMPUG00000019061)	MTERF1 (ENSMPUG00000008568)	AKAP9 (ENSMPUG00000008532) ##22	CYP51A1 (ENSMPUG00000008516)	LRRD1 (ENSMPUG00000008496)	KRIT1 (ENSMPUG00000008481)	ANKIB1 (ENSMPUG00000008462)	ENSMPUG00000008432	GATAD1 (ENSMPUG00000008401)	PEX1 (ENSMPUG00000008386)	RBM48 (ENSMPUG00000008377)	ENSMPUG00000008345	FAM133B (ENSMPUG00000008337)	CDK6 (ENSMPUG00000008328)	ENSMPUG00000019060	SAMD9L (ENSMPUG00000019059)	HEPACAM2 (ENSMPUG00000008320)	VPS50 (ENSMPUG00000008300)
American mink	MODERN SPECIES	34	ADAM22 (ENSNVIG00000003117)	SRI (ENSNVIG00000003303)	STEA4 (ENSNVIG00000003340)	ZNF804B (ENSNVIG00000003393)	TEX47 (ENSNVIG00000003419)	STEA1 (ENSNVIG00000003431)	STEAP2 (ENSNVIG00000003451)	CFAP69 (ENSNVIG00000003476)	FAM237B (ENSNVIG00000003548)	GTPBA (ENSNVIG00000003565)	ENSNVIG00000003601	CLD12 (ENSNVIG00000003622)	CDK14 (ENSNVIG00000003638)	FZD1 (ENSNVIG00000003774)	MTERF1 (ENSNVIG00000003786)	AKAP9 (ENSNVIG00000003801) ##22	CYP51A1 (ENSNVIG00000003969)	LRRD1 (ENSNVIG00000004024)	KRIT1 (ENSNVIG00000004053)	ANKIB1 (ENSNVIG00000004143)	ENSNVIG00000004181	GATAD1 (ENSNVIG00000004201)	PEX1 (ENSNVIG00000004219)	RBM48 (ENSNVIG00000004317)	ENSNVIG00000004336
Canidae	ANCESTRAL SPECIES	22	ENSGT00530000063909.b.`b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Red fox	DUPLICATION
Red fox	MODERN SPECIES	48										ENSVVUG00000013675	CLDN12 (ENSVVUG00000013775)	CDK14 (ENSVVUG00000013793)	FZD1 (ENSVVUG00000013833)	MTERF1 (ENSVVUG00000013841)	ENSVVUG00000013854 ##22	ENSVVUG00000014109 ##22	CYP51A1 (ENSVVUG00000014394)	LRRD1 (ENSVVUG00000014702)	ENSVVUG00000014704	KRIT1 (ENSVVUG00000014707)	ANKIB1 (ENSVVUG00000014994)	ENSVVUG00000015333	ENSVVUG00000015336	PEX1 (ENSVVUG00000015340)	RBM48 (ENSVVUG00000015356)	ENSVVUG00000015357	ENSVVUG00000015360	CDK6 (ENSVVUG00000015364)	HEPACAM2 (ENSVVUG00000015380)	ENSVVUG00000015383	ENSVVUG00000015385
Red fox	MODERN SPECIES	48											ENSVVUG00000013675	CLDN12 (ENSVVUG00000013775)	CDK14 (ENSVVUG00000013793)	FZD1 (ENSVVUG00000013833)	MTERF1 (ENSVVUG00000013841)	ENSVVUG00000013854 ##22	ENSVVUG00000014109 ##22	CYP51A1 (ENSVVUG00000014394)	LRRD1 (ENSVVUG00000014702)	ENSVVUG00000014704	KRIT1 (ENSVVUG00000014707)	ANKIB1 (ENSVVUG00000014994)	ENSVVUG00000015333	ENSVVUG00000015336	PEX1 (ENSVVUG00000015340)	RBM48 (ENSVVUG00000015356)	ENSVVUG00000015357	ENSVVUG00000015360	CDK6 (ENSVVUG00000015364)	HEPACAM2 (ENSVVUG00000015380)	ENSVVUG00000015383
Canis_lupus	ANCESTRAL SPECIES	24	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000169914.b	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Dog	MODERN SPECIES	5	STEAP4 (ENSCAFG00845010902)	STEAP4 (ENSCAFG00845010934)	ENSCAFG00845010975	ZNF804B (ENSCAFG00845011003)	TEX47 (ENSCAFG00845011020)	STEAP1 (ENSCAFG00845011089)	STEAP2 (ENSCAFG00845011131)	CFAP69 (ENSCAFG00845011211)	ENSCAFG00845011533	ENSCAFG00845011621	GTPBP10 (ENSCAFG00845011658)	CLDN12 (ENSCAFG00845011713)	CDK14 (ENSCAFG00845011798)	FZD1 (ENSCAFG00845012103)	MTERF1 (ENSCAFG00845012129)	AKAP9 (ENSCAFG00845012251) ##22	CYP51A1 (ENSCAFG00845012499)	LRRD1 (ENSCAFG00845012529)	KRIT1 (ENSCAFG00845012624)	ANKIB1 (ENSCAFG00845012711)	TMBIM7 (ENSCAFG00845012769)	GATAD1 (ENSCAFG00845012816)	PEX1 (ENSCAFG00845012932)	RBM48 (ENSCAFG00845013110)	ENSCAFG00845013132	ENSCAFG00845013194	CDK6 (ENSCAFG00845013226)	SAMD9L (ENSCAFG00845013275)	ENSCAFG00845013314	HEPACAM2 (ENSCAFG00845013350)	VPS50 (ENSCAFG00845013594)
Dingo	MODERN SPECIES	203	SRI (ENSCAFG00020016318)	STEAP4 (ENSCAFG00020016313)	ENSCAFG00020016304	TEX47 (ENSCAFG00020016303)	ENSCAFG00020016297	STEAP2 (ENSCAFG00020016287)	CFAP69 (ENSCAFG00020016281)	FAM237B (ENSCAFG00020016278)	ENSCAFG00020016276	GTPBP10 (ENSCAFG00020016274)	CLDN12 (ENSCAFG00020016272)	ENSCAFG00020016271	CDK14 (ENSCAFG00020016001)	FZD1 (ENSCAFG00020015984)	MTERF1 (ENSCAFG00020015983)	AKAP9 (ENSCAFG00020012750) ##22	CYP51A1 (ENSCAFG00020012602)	LRRD1 (ENSCAFG00020012589)	KRIT1 (ENSCAFG00020012582)	ANKIB1 (ENSCAFG00020012167)	ENSCAFG00020012133	GATAD1 (ENSCAFG00020012131)	PEX1 (ENSCAFG00020011886)	RBM48 (ENSCAFG00020011883)	ENSCAFG00020011881	ENSCAFG00020011879	CDK6 (ENSCAFG00020011877)	SAMD9L (ENSCAFG00020011874)	HEPACAM2 (ENSCAFG00020011863)	VPS50 (ENSCAFG00020011719)	CALCR (ENSCAFG00020011670)
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00390000000673.b.nb	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427.c	ENSGT00940000161427.d	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589.q	ENSGT00900000143685	ENSGT00400000022250	ENSGT00390000000673.b.nb	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427.d	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589.q	ENSGT00900000143685	ENSGT00400000022250	ENSGT00390000000673.b.nb	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427.d	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
lion	MODERN SPECIES	2	ADAM22 (ENSPLOG00000017433)	SRI (ENSPLOG00000018339)	STEAP4 (ENSPLOG00000018496)	ZNF804B (ENSPLOG00000018568)	TEX47 (ENSPLOG00000018612)	ENSPLOG00000018636	STEAP2 (ENSPLOG00000018695)	CFAP69 (ENSPLOG00000018819)	FAM237B (ENSPLOG00000019094)	ENSPLOG00000019123	ENSPLOG00000010632	CLDN12 (ENSPLOG00000010663)	ENSPLOG00000010682	CDK14 (ENSPLOG00000010776)	FZD1 (ENSPLOG00000011131)	AKAP9 (ENSPLOG00000011181) ##22	CYP51A1 (ENSPLOG00000011713)	ENSPLOG00000011855	KRIT1 (ENSPLOG00000011898)	ANKIB1 (ENSPLOG00000011976)	ENSPLOG00000012033	GATAD1 (ENSPLOG00000012159)	PEX1 (ENSPLOG00000012237)	RBM48 (ENSPLOG00000012361)	ENSPLOG00000012402	FAM133B (ENSPLOG00000012467)	CDK6 (ENSPLOG00000012520)	SAMD9L (ENSPLOG00000012575)	HEPACAM2 (ENSPLOG00000012611)	VPS50 (ENSPLOG00000012886)	CALCR (ENSPLOG00000013499)
leopard	MODERN SPECIES	9	ADAM22 (ENSPPRG00000023672)	SRI (ENSPPRG00000011597)	STEAP4 (ENSPPRG00000010110)	ZNF804B (ENSPPRG00000009796)	TEX47 (ENSPPRG00000018674)	ENSPPRG00000009647	STEAP2 (ENSPPRG00000009387)	CFAP69 (ENSPPRG00000007587)	ENSPPRG00000005403	ENSPPRG00000004332	CLDN12 (ENSPPRG00000018271)	ENSPPRG00000003845	CDK14 (ENSPPRG00000003433)	FZD1 (ENSPPRG00000018206)	MTERF1 (ENSPPRG00000002171)	AKAP9 (ENSPPRG00000001345) ##22	CYP51A1 (ENSPPRG00000011357)	ENSPPRG00000010461	KRIT1 (ENSPPRG00000010220)	ANKIB1 (ENSPPRG00000006639)	ENSPPRG00000006310	GATAD1 (ENSPPRG00000003057)	PEX1 (ENSPPRG00000002724)	RBM48 (ENSPPRG00000000466)	ENSPPRG00000000419	ENSPPRG00000023128	CDK6 (ENSPPRG00000023860)	HEPACAM2 (ENSPPRG00000024384)	VPS50 (ENSPPRG00000018689)	CALCR (ENSPPRG00000013040)	ENSPPRG00000008996
Tiger	MODERN SPECIES	86			ADAM22 (ENSPTIG00000006442)	SRI (ENSPTIG00000018023)	STEAP4 (ENSPTIG00000017089)	TEX47 (ENSPTIG00000000434)	ZNF804B (ENSPTIG00000016340)	ENSPTIG00000015636	STEAP2 (ENSPTIG00000013009)	CFAP69 (ENSPTIG00000008285)	ENSPTIG00000003183	CLDN12 (ENSPTIG00000000081)	ENSPTIG00000021823	CDK14 (ENSPTIG00000017718)	MTERF1 (ENSPTIG00000016254)	AKAP9 (ENSPTIG00000018830) ##22	CYP51A1 (ENSPTIG00000017824)	ENSPTIG00000017125	KRIT1 (ENSPTIG00000007931)	ANKIB1 (ENSPTIG00000006747)	ENSPTIG00000021172	ENSPTIG00000006969	PEX1 (ENSPTIG00000016431)	RBM48 (ENSPTIG00000015729)	ENSPTIG00000015217	FAM133B (ENSPTIG00000012050)	CDK6 (ENSPTIG00000010732)	HEPACAM2 (ENSPTIG00000005522)	VPS50 (ENSPTIG00000016825)	CALCR (ENSPTIG00000011922)	ENSPTIG00000011416
Cat	MODERN SPECIES	1	STEAP4 (ENSFCAG00000024344)	ZNF804B (ENSFCAG00000008141)	TEX47 (ENSFCAG00000041090)	ENSFCAG00000048779	ENSFCAG00000028721	STEAP2 (ENSFCAG00000018754)	CFAP69 (ENSFCAG00000018697)	FAM237B (ENSFCAG00000042902)	GTPBP10 (ENSFCAG00000019336)	ENSFCAG00000037995	CLDN12 (ENSFCAG00000026768)	ENSFCAG00000022771	CDK14 (ENSFCAG00000022815)	FZD1 (ENSFCAG00000027318)	MTERF1 (ENSFCAG00000044797)	AKAP9 (ENSFCAG00000019191) ##22	CYP51A1 (ENSFCAG00000025479)	ENSFCAG00000051313	ENSFCAG00000042221	KRIT1 (ENSFCAG00000028106)	ANKIB1 (ENSFCAG00000022205)	TMBIM7 (ENSFCAG00000031366)	GATAD1 (ENSFCAG00000018515)	PEX1 (ENSFCAG00000014645)	RBM48 (ENSFCAG00000038430)	ENSFCAG00000024823	FAM133B (ENSFCAG00000030190)	CDK6 (ENSFCAG00000045118)	SAMD9L (ENSFCAG00000029344)	HEPACAM2 (ENSFCAG00000028741)	VPS50 (ENSFCAG00000007438)
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00900000143685	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Chiroptera	ANCESTRAL SPECIES	24	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Megabat	MODERN SPECIES	418															MTERF1 (ENSPVAG00000006613)	AKAP9 (ENSPVAG00000006616) ##22	CYP51A1 (ENSPVAG00000006619)	ENSPVAG00000006623
Microchiroptera	ANCESTRAL SPECIES	24	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Microbat	MODERN SPECIES	952									ENSMLUG00000010243	STEAP2 (ENSMLUG00000007358)	CFAP69 (ENSMLUG00000007369)	ENSMLUG00000007418	CLDN12 (ENSMLUG00000007413)	FZD1 (ENSMLUG00000002634)	MTERF1 (ENSMLUG00000011330)	AKAP9 (ENSMLUG00000017713) ##22	CYP51A1 (ENSMLUG00000017714)	KRIT1 (ENSMLUG00000017177)	ANKIB1 (ENSMLUG00000011789)	ENSMLUG00000028584	GATAD1 (ENSMLUG00000011820)	PEX1 (ENSMLUG00000011828)	RBM48 (ENSMLUG00000011863)	ENSMLUG00000028906	FAM133B (ENSMLUG00000005933)	CDK6 (ENSMLUG00000011872)	ENSMLUG00000027335	ENSMLUG00000022770	SAMD9L (ENSMLUG00000017034)	HEPACAM2 (ENSMLUG00000000672)	VPS50 (ENSMLUG00000010632)
Greater horseshoe bat	MODERN SPECIES	12	SRI (ENSRFEG00010018884)	STEAP4 (ENSRFEG00010018812)	TEX47 (ENSRFEG00010018787)	ZNF804B (ENSRFEG00010018744)	ENSRFEG00010018697	STEAP2 (ENSRFEG00010018674)	CFAP69 (ENSRFEG00010018240)	FAM237B (ENSRFEG00010018211)	ENSRFEG00010018146	CLDN12 (ENSRFEG00010018135)	ENSRFEG00010018095	CDK14 (ENSRFEG00010017750)	FZD1 (ENSRFEG00010017724)	ENSRFEG00010017665	MTERF1 (ENSRFEG00010017594)	AKAP9 (ENSRFEG00010017470) ##22	CYP51A1 (ENSRFEG00010017294)	ENSRFEG00010017252	ENSRFEG00010017236	KRIT1 (ENSRFEG00010017134)	ANKIB1 (ENSRFEG00010017072)	ENSRFEG00010016885	GATAD1 (ENSRFEG00010016838)	PEX1 (ENSRFEG00010016704)	RBM48 (ENSRFEG00010016637)	ENSRFEG00010016484	ENSRFEG00010016424	ENSRFEG00010016374	ENSRFEG00010016075	CDK6 (ENSRFEG00010016022)	SAMD9 (ENSRFEG00010015996)
Equus	ANCESTRAL SPECIES	13	ENSGT00520000055666.b #17	ENSGT00390000005581.a #16	ENSGT00940000155682 #15	ENSGT00940000162889 #14	ENSGT00940000162185 #13	ENSGT00950000183022.b #12	ENSGT00940000158212.B #11	ENSGT00390000007989 #10	ENSGT00940000155992 #9	ENSGT00390000015709 #8	ENSGT01090000259987.a.a.a #7	ENSGT00390000004977	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Horse	MODERN SPECIES	25	ZNF804B (ENSECAG00000023047)	TEX47 (ENSECAG00000005692)	ENSECAG00000044914	ENSECAG00000023308	STEAP2 (ENSECAG00000007108)	CFAP69 (ENSECAG00000009023)	GTPBP10 (ENSECAG00000017416)	ENSECAG00000038977	CLDN12 (ENSECAG00000005767)	PTTG1IP2 (ENSECAG00000047053)	CDK14 (ENSECAG00000006765)	ENSECAG00000034800	FZD1 (ENSECAG00000001326)	ENSECAG00000048913	MTERF1 (ENSECAG00000018128)	AKAP9 (ENSECAG00000020181) ##22	CYP51A1 (ENSECAG00000006455)	LRRD1 (ENSECAG00000014527)	KRIT1 (ENSECAG00000016850)	ANKIB1 (ENSECAG00000010373)	ENSECAG00000053246	GATAD1 (ENSECAG00000021181)	PEX1 (ENSECAG00000021379)	RBM48 (ENSECAG00000011070)	ENSECAG00000052012	FAM133B (ENSECAG00000026810)	CDK6 (ENSECAG00000016512)	SAMD9 (ENSECAG00000001399)	SAMD9L (ENSECAG00000001481)	HEPACAM2 (ENSECAG00000019487)	VPS50 (ENSECAG00000022811)
Donkey	MODERN SPECIES		ADAM22 (ENSEASG00005017677)	SRI (ENSEASG00005019611)	STEAP4 (ENSEASG00005019613)	TEX47 (ENSEASG00005025315)	ZNF804B (ENSEASG00005019618)	ENSEASG00005019619	STEAP2 (ENSEASG00005019620)	CFAP69 (ENSEASG00005019625)	ENSEASG00005019633	GTPBP10 (ENSEASG00005019630)	CLDN12 (ENSEASG00005027670)	PTTG1IP2 (ENSEASG00005031786)	CDK14 (ENSEASG00005019642)	FZD1 (ENSEASG00005037063)	MTERF1 (ENSEASG00005019646)	AKAP9 (ENSEASG00005019732) ##22	CYP51A1 (ENSEASG00005020020)	LRRD1 (ENSEASG00005020024)	KRIT1 (ENSEASG00005020028)	ANKIB1 (ENSEASG00005020038)	ENSEASG00005036639	GATAD1 (ENSEASG00005020044)	PEX1 (ENSEASG00005020048)	RBM48 (ENSEASG00005020055)	ENSEASG00005020062	FAM133B (ENSEASG00005020075)	CDK6 (ENSEASG00005020081)	SAMD9 (ENSEASG00005020088)	ENSEASG00005035175	ENSEASG00005033147	HEPACAM2 (ENSEASG00005020097)
Atlantogenata	ANCESTRAL SPECIES	7	ENSGT00530000063909.b	ENSGT00420000030112	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Afrotheria	ANCESTRAL SPECIES	5	ENSGT00940000159175	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917
Afrotheria_a	ANCESTRAL SPECIES	5	ENSGT00940000159175	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.f	ENSGT00940000157957	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917
Elephant	DUPLICATION
Elephant	MODERN SPECIES	428	SLC25A40 (ENSLAFG00000010955)	DBF4 (ENSLAFG00000010962)	ADAM22 (ENSLAFG00000009316)	SRI (ENSLAFG00000027380)	STEAP4 (ENSLAFG00000010807)	TEX47 (ENSLAFG00000025753)	ENSLAFG00000011484	STEAP2 (ENSLAFG00000009940)	CFAP69 (ENSLAFG00000009943)	GTPBP10 (ENSLAFG00000009945)	CLDN12 (ENSLAFG00000028440)	CDK14 (ENSLAFG00000002795)	FZD1 (ENSLAFG00000011817)	MTERF1 (ENSLAFG00000000054)	ENSLAFG00000000058 ##22	ENSLAFG00000026774 ##22	CYP51A1 (ENSLAFG00000000066)	LRRD1 (ENSLAFG00000030816)	KRIT1 (ENSLAFG00000012994)	ANKIB1 (ENSLAFG00000013273)	GATAD1 (ENSLAFG00000021929)	PEX1 (ENSLAFG00000018518)	RBM48 (ENSLAFG00000018524)	ENSLAFG00000030216	FAM133B (ENSLAFG00000029755)	CDK6 (ENSLAFG00000018527)	ENSLAFG00000007805	HEPACAM2 (ENSLAFG00000000874)	VPS50 (ENSLAFG00000000877)	CALCR (ENSLAFG00000025731)	TFPI2 (ENSLAFG00000016696)
Elephant	MODERN SPECIES	428	RUNDC3B (ENSLAFG00000010950)	SLC25A40 (ENSLAFG00000010955)	DBF4 (ENSLAFG00000010962)	ADAM22 (ENSLAFG00000009316)	SRI (ENSLAFG00000027380)	STEAP4 (ENSLAFG00000010807)	TEX47 (ENSLAFG00000025753)	ENSLAFG00000011484	STEAP2 (ENSLAFG00000009940)	CFAP69 (ENSLAFG00000009943)	GTPBP10 (ENSLAFG00000009945)	CLDN12 (ENSLAFG00000028440)	CDK14 (ENSLAFG00000002795)	FZD1 (ENSLAFG00000011817)	MTERF1 (ENSLAFG00000000054)	ENSLAFG00000000058 ##22	ENSLAFG00000026774 ##22	CYP51A1 (ENSLAFG00000000066)	LRRD1 (ENSLAFG00000030816)	KRIT1 (ENSLAFG00000012994)	ANKIB1 (ENSLAFG00000013273)	GATAD1 (ENSLAFG00000021929)	PEX1 (ENSLAFG00000018518)	RBM48 (ENSLAFG00000018524)	ENSLAFG00000030216	FAM133B (ENSLAFG00000029755)	CDK6 (ENSLAFG00000018527)	ENSLAFG00000007805	HEPACAM2 (ENSLAFG00000000874)	VPS50 (ENSLAFG00000000877)	CALCR (ENSLAFG00000025731)
Hyrax	MODERN SPECIES	2039																AKAP9 (ENSPCAG00000012253) ##22	CYP51A1 (ENSPCAG00000012608)
Tenrec	MODERN SPECIES	2505																AKAP9 (ENSETEG00000000654) ##22	CYP51A1 (ENSETEG00000000663)	ENSETEG00000000668	KRIT1 (ENSETEG00000000672)	ANKIB1 (ENSETEG00000000677)
Xenarthra	ANCESTRAL SPECIES	136															ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.e	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT00390000013973.A.a.d.b	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3427														MTERF1 (ENSDNOG00000032229)	ENSDNOG00000008182 ##22	ENSDNOG00000040333 ##22	CYP51A1 (ENSDNOG00000008285)	ENSDNOG00000046611	LRRD1 (ENSDNOG00000041070)	KRIT1 (ENSDNOG00000008198)	ANKIB1 (ENSDNOG00000008391)	ENSDNOG00000045122	GATAD1 (ENSDNOG00000035296)	PEX1 (ENSDNOG00000003433)	RBM48 (ENSDNOG00000015983)	ENSDNOG00000034445	ENSDNOG00000048199	CDK6 (ENSDNOG00000042456)	SAMD9 (ENSDNOG00000038892)	SAMD9L (ENSDNOG00000040042)	HEPACAM2 (ENSDNOG00000018399)
Armadillo	MODERN SPECIES	3427															MTERF1 (ENSDNOG00000032229)	ENSDNOG00000008182 ##22	ENSDNOG00000040333 ##22	CYP51A1 (ENSDNOG00000008285)	ENSDNOG00000046611	LRRD1 (ENSDNOG00000041070)	KRIT1 (ENSDNOG00000008198)	ANKIB1 (ENSDNOG00000008391)	ENSDNOG00000045122	GATAD1 (ENSDNOG00000035296)	PEX1 (ENSDNOG00000003433)	RBM48 (ENSDNOG00000015983)	ENSDNOG00000034445	ENSDNOG00000048199	CDK6 (ENSDNOG00000042456)	SAMD9 (ENSDNOG00000038892)	SAMD9L (ENSDNOG00000040042)
Sloth	MODERN SPECIES	7912																AKAP9 (ENSCHOG00000008792) ##22	CYP51A1 (ENSCHOG00000008841)
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00390000014785.v	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.g.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.d	ENSGT00390000013973.A.a.d.c	ENSGT00390000009163	ENSGT00940000153814.a
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00390000014785.v	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.g.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.d	ENSGT00390000013973.A.a.d.c	ENSGT00390000009163	ENSGT00940000153814.a
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00390000014785.v	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.g.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.d	ENSGT00390000013973.A.a.d.c	ENSGT00390000009163	ENSGT00940000153814.a
Diprotodontia_a	DUPLICATION
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000005565	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00390000014785.v	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b.q ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000163856	ENSGT00730000111097.g.b	ENSGT00940000157957	ENSGT00390000013973.A.a.d.d	ENSGT00390000013973.A.a.d.c	ENSGT00390000009163	ENSGT00940000153814.a
Common wonbat	MODERN SPECIES	329	ENSVURG00010022864	ADAM22 (ENSVURG00010022803)	SRI (ENSVURG00010022789)	STEAP4 (ENSVURG00010022786)	TEX47 (ENSVURG00010022782)	ENSVURG00010022771	STEAP2 (ENSVURG00010022766)	CFAP69 (ENSVURG00010022759)	FAM237B (ENSVURG00010022755)	GTPBP10 (ENSVURG00010022747)	CLDN12 (ENSVURG00010022740)	ENSVURG00010022737	ENSVURG00010022733	CDK14 (ENSVURG00010022728)	FZD1 (ENSVURG00010022724)	AKAP9 (ENSVURG00010022678) ##22	CYP51A1 (ENSVURG00010022669)	ENSVURG00010022665	KRIT1 (ENSVURG00010022658)	ANKIB1 (ENSVURG00010022646)	GATAD1 (ENSVURG00010022638)	PEX1 (ENSVURG00010022614)	RBM48 (ENSVURG00010022603)	ENSVURG00010022599	ENSVURG00010022595	CDK6 (ENSVURG00010022586)	ENSVURG00010022581	ENSVURG00010022579	SUSD5 (ENSVURG00010022578)	ENSVURG00010022574	GLB1 (ENSVURG00010022569)
koala	MODERN SPECIES	28	ENSPCIG00000035442	ADAM22 (ENSPCIG00000015659)	SRI (ENSPCIG00000015646)	STEAP4 (ENSPCIG00000010792)	TEX47 (ENSPCIG00000032009)	ENSPCIG00000015345	STEAP2 (ENSPCIG00000015349)	CFAP69 (ENSPCIG00000015356)	ENSPCIG00000030678	ENSPCIG00000035198	GTPBP10 (ENSPCIG00000015146)	CDK14 (ENSPCIG00000031851)	FZD1 (ENSPCIG00000026040)	ENSPCIG00000026036	ENSPCIG00000033332 ##22	ENSPCIG00000026035 ##22	CYP51A1 (ENSPCIG00000026034)	ENSPCIG00000035720	KRIT1 (ENSPCIG00000026031)	ANKIB1 (ENSPCIG00000026030)	ENSPCIG00000026029	GATAD1 (ENSPCIG00000037007)	PEX1 (ENSPCIG00000026024)	ENSPCIG00000026021	RBM48 (ENSPCIG00000026020)	ENSPCIG00000034934	ENSPCIG00000026017	CDK6 (ENSPCIG00000030740)	ENSPCIG00000002108	ENSPCIG00000002097	SUSD5 (ENSPCIG00000003505)
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00730000110871.a.b.r ##22
koala	MODERN SPECIES	28	SLC25A40 (ENSPCIG00000014993)	ENSPCIG00000035442	ADAM22 (ENSPCIG00000015659)	SRI (ENSPCIG00000015646)	STEAP4 (ENSPCIG00000010792)	TEX47 (ENSPCIG00000032009)	ENSPCIG00000015345	STEAP2 (ENSPCIG00000015349)	CFAP69 (ENSPCIG00000015356)	ENSPCIG00000030678	ENSPCIG00000035198	GTPBP10 (ENSPCIG00000015146)	CDK14 (ENSPCIG00000031851)	FZD1 (ENSPCIG00000026040)	ENSPCIG00000026036	ENSPCIG00000033332 ##22	ENSPCIG00000026035 ##22	CYP51A1 (ENSPCIG00000026034)	ENSPCIG00000035720	KRIT1 (ENSPCIG00000026031)	ANKIB1 (ENSPCIG00000026030)	ENSPCIG00000026029	GATAD1 (ENSPCIG00000037007)	PEX1 (ENSPCIG00000026024)	ENSPCIG00000026021	RBM48 (ENSPCIG00000026020)	ENSPCIG00000034934	ENSPCIG00000026017	CDK6 (ENSPCIG00000030740)	ENSPCIG00000002108	ENSPCIG00000002097
Tasmanian devil	MODERN SPECIES	4	RUNDC3B (ENSSHAG00000004560)	SLC25A40 (ENSSHAG00000006465)	DBF4 (ENSSHAG00000007076)	ADAM22 (ENSSHAG00000008954)	SRI (ENSSHAG00000009723)	STEAP4 (ENSSHAG00000010247)	TEX47 (ENSSHAG00000013364)	ENSSHAG00000017197	STEAP2 (ENSSHAG00000017270)	CFAP69 (ENSSHAG00000017332)	ENSSHAG00000017484	GTPBP10 (ENSSHAG00000025489)	CLDN12 (ENSSHAG00000030772)	CDK14 (ENSSHAG00000023693)	FZD1 (ENSSHAG00000024206)	AKAP9 (ENSSHAG00000018806) ##22	CYP51A1 (ENSSHAG00000023874)	KRIT1 (ENSSHAG00000018866)	ENSSHAG00000023424	ANKIB1 (ENSSHAG00000018875)	GATAD1 (ENSSHAG00000025051)	PEX1 (ENSSHAG00000018923)	RBM48 (ENSSHAG00000018931)	ENSSHAG00000024561	CDK6 (ENSSHAG00000003381)	ENSSHAG00000009644	ENSSHAG00000009876	ENSSHAG00000023203	CRTAP (ENSSHAG00000021795)	GLB1 (ENSSHAG00000022301)	ENSSHAG00000001777
Opossum	MODERN SPECIES	7	DBF4 (ENSMODG00000010305)	ADAM22 (ENSMODG00000010338)	SRI (ENSMODG00000010355)	ENSMODG00000010381	TEX47 (ENSMODG00000010385)	ENSMODG00000010389	ENSMODG00000010406	ENSMODG00000047162	STEAP2 (ENSMODG00000010417)	CFAP69 (ENSMODG00000010440)	FAM237B (ENSMODG00000024066)	ENSMODG00000010447	GTPBP10 (ENSMODG00000010453)	CDK14 (ENSMODG00000010497)	FZD1 (ENSMODG00000010505)	AKAP9 (ENSMODG00000010587) ##22	ENSMODG00000010610	ENSMODG00000010621	KRIT1 (ENSMODG00000010670)	ENSMODG00000010686	ENSMODG00000043547	GATAD1 (ENSMODG00000010701)	PEX1 (ENSMODG00000010715)	RBM48 (ENSMODG00000010730)	ENSMODG00000010750	ENSMODG00000010759	CDK6 (ENSMODG00000010772)	ENSMODG00000036822	SUSD5 (ENSMODG00000025477)	CRTAP (ENSMODG00000010792)	ENSMODG00000039172
Platypus	MODERN SPECIES	19							ENSOANG00000041836	STEAP2 (ENSOANG00000007083)	CFAP69 (ENSOANG00000006303)	GTPBP10 (ENSOANG00000014455)	CLDN12 (ENSOANG00000050801)	ENSOANG00000036232	CDK14 (ENSOANG00000013237)	FZD1 (ENSOANG00000040316)	ENSOANG00000004680	ENSOANG00000036730 ##22	CYP51A1 (ENSOANG00000013144)	ENSOANG00000007205	KRIT1 (ENSOANG00000009505)	ANKIB1 (ENSOANG00000047884)	ENSOANG00000044362	GATAD1 (ENSOANG00000038373)	PEX1 (ENSOANG00000012125)	ENSOANG00000041229	ENSOANG00000012123	ENSOANG00000001763	CDK6 (ENSOANG00000039459)	HEPACAM2 (ENSOANG00000004158)	VPS50 (ENSOANG00000036008)	CALCR (ENSOANG00000042421)	ENSOANG00000046025
Sauria	ANCESTRAL SPECIES	15	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Archosauria	ANCESTRAL SPECIES		ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Aves	ANCESTRAL SPECIES	5	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00960000189068	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Neognathae	ANCESTRAL SPECIES		ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00960000189068	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	19	SLC25A40 (ENSACCG00020003920)	DBF4 (ENSACCG00020003892)	ADAM22 (ENSACCG00020003338)	SRI (ENSACCG00020002648)	STEAP4 (ENSACCG00020002632)	ENSACCG00020002619	STEAP2 (ENSACCG00020002607)	CFAP69 (ENSACCG00020002546)	FAM237B (ENSACCG00020002469)	GTPBP10 (ENSACCG00020002445)	CLDN12 (ENSACCG00020002429)	ENSACCG00020002419	CDK14 (ENSACCG00020002388)	FZD1 (ENSACCG00020002352)	ENSACCG00020002341 ##22	ENSACCG00020002311 ##22	CYP51A1 (ENSACCG00020002273)	ENSACCG00020002249	KRIT1 (ENSACCG00020002209)	ANKIB1 (ENSACCG00020002178)	GATAD1 (ENSACCG00020002144)	ENSACCG00020002108	PEX1 (ENSACCG00020002073)	RBM48 (ENSACCG00020002052)	CLXN (ENSACCG00020002037)	ENSACCG00020002010	CDK6 (ENSACCG00020001993)	HEPACAM2 (ENSACCG00020001974)	VPS50 (ENSACCG00020001926)	CALCR (ENSACCG00020001885)	TFPI2 (ENSACCG00020001845)
Golden eagle	MODERN SPECIES	19	RUNDC3B (ENSACCG00020003940)	SLC25A40 (ENSACCG00020003920)	DBF4 (ENSACCG00020003892)	ADAM22 (ENSACCG00020003338)	SRI (ENSACCG00020002648)	STEAP4 (ENSACCG00020002632)	ENSACCG00020002619	STEAP2 (ENSACCG00020002607)	CFAP69 (ENSACCG00020002546)	FAM237B (ENSACCG00020002469)	GTPBP10 (ENSACCG00020002445)	CLDN12 (ENSACCG00020002429)	ENSACCG00020002419	CDK14 (ENSACCG00020002388)	FZD1 (ENSACCG00020002352)	ENSACCG00020002341 ##22	ENSACCG00020002311 ##22	CYP51A1 (ENSACCG00020002273)	ENSACCG00020002249	KRIT1 (ENSACCG00020002209)	ANKIB1 (ENSACCG00020002178)	GATAD1 (ENSACCG00020002144)	ENSACCG00020002108	PEX1 (ENSACCG00020002073)	RBM48 (ENSACCG00020002052)	CLXN (ENSACCG00020002037)	ENSACCG00020002010	CDK6 (ENSACCG00020001993)	HEPACAM2 (ENSACCG00020001974)	VPS50 (ENSACCG00020001926)	CALCR (ENSACCG00020001885)
Kakapo	MODERN SPECIES		DBF4 (ENSSHBG00005000037)	ADAM22 (ENSSHBG00005000055)	SRI (ENSSHBG00005000065)	STEAP4 (ENSSHBG00005005230)	ZNF804B (ENSSHBG00005005256)	ENSSHBG00005005266	STEAP2 (ENSSHBG00005005273)	CFAP69 (ENSSHBG00005005411)	FAM237B (ENSSHBG00005005535)	GTPBP10 (ENSSHBG00005005556)	ENSSHBG00005005572	CLDN12 (ENSSHBG00005005580)	ENSSHBG00005005595	CDK14 (ENSSHBG00005005624)	FZD1 (ENSSHBG00005005639)	AKAP9 (ENSSHBG00005005677) ##22	CYP51A1 (ENSSHBG00005005801)	KRIT1 (ENSSHBG00005005836)	ANKIB1 (ENSSHBG00005005865)	GATAD1 (ENSSHBG00005005890)	PEX1 (ENSSHBG00005006166)	RBM48 (ENSSHBG00005007466)	CLXN (ENSSHBG00005007483)	ENSSHBG00005007500	CDK6 (ENSSHBG00005007526)	HEPACAM2 (ENSSHBG00005007548)	VPS50 (ENSSHBG00005007626)	CALCR (ENSSHBG00005007738)	SUV39H1 (ENSSHBG00005007762)	WDR13 (ENSSHBG00005007776)	TAFAZZIN (ENSSHBG00005007791)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479.a	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.a	ENSGT00940000164410
Great tit	DUPLICATION
Great tit	MODERN SPECIES	11	DBF4 (ENSPMJG00000007211)	ADAM22 (ENSPMJG00000007298)	SRI (ENSPMJG00000007342)	STEAP4 (ENSPMJG00000007349)	ZNF804B (ENSPMJG00000007377)	ACBD7 (ENSPMJG00000007380)	ENSPMJG00000007416	STEAP2 (ENSPMJG00000007423)	CFAP69 (ENSPMJG00000007456)	FAM237B (ENSPMJG00000007459)	ENSPMJG00000007460	CLDN12 (ENSPMJG00000007461)	ENSPMJG00000007462	CDK14 (ENSPMJG00000007560)	FZD1 (ENSPMJG00000007569)	ENSPMJG00000007659 ##22	ENSPMJG00000007741 ##22	CYP51A1 (ENSPMJG00000007751)	KRIT1 (ENSPMJG00000007754)	ANKIB1 (ENSPMJG00000007757)	GATAD1 (ENSPMJG00000007766)	PEX1 (ENSPMJG00000007769)	RBM48 (ENSPMJG00000007771)	CLXN (ENSPMJG00000007773)	CDK6 (ENSPMJG00000007804)	HEPACAM2 (ENSPMJG00000007813)	VPS50 (ENSPMJG00000007921)	CALCR (ENSPMJG00000007926)	TFPI2 (ENSPMJG00000007970)	ENSPMJG00000007971	ENSPMJG00000007972
Great tit	MODERN SPECIES	11	ADAM22 (ENSPMJG00000007298)	SRI (ENSPMJG00000007342)	STEAP4 (ENSPMJG00000007349)	ZNF804B (ENSPMJG00000007377)	ACBD7 (ENSPMJG00000007380)	ENSPMJG00000007416	STEAP2 (ENSPMJG00000007423)	CFAP69 (ENSPMJG00000007456)	FAM237B (ENSPMJG00000007459)	ENSPMJG00000007460	CLDN12 (ENSPMJG00000007461)	ENSPMJG00000007462	CDK14 (ENSPMJG00000007560)	FZD1 (ENSPMJG00000007569)	ENSPMJG00000007659 ##22	ENSPMJG00000007741 ##22	CYP51A1 (ENSPMJG00000007751)	KRIT1 (ENSPMJG00000007754)	ANKIB1 (ENSPMJG00000007757)	GATAD1 (ENSPMJG00000007766)	PEX1 (ENSPMJG00000007769)	RBM48 (ENSPMJG00000007771)	CLXN (ENSPMJG00000007773)	CDK6 (ENSPMJG00000007804)	HEPACAM2 (ENSPMJG00000007813)	VPS50 (ENSPMJG00000007921)	CALCR (ENSPMJG00000007926)	TFPI2 (ENSPMJG00000007970)	ENSPMJG00000007971	ENSPMJG00000007972	COL1A2 (ENSPMJG00000008138)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479.a	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.a	ENSGT00940000164410
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479.a	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.a	ENSGT00940000164410
Medium ground finch	MODERN SPECIES	10	SLC25A40 (ENSGFOG00000004043)	DBF4 (ENSGFOG00000004032)	ADAM22 (ENSGFOG00000003991)	SRI (ENSGFOG00000003973)	STEAP4 (ENSGFOG00000003940)	ZNF804B (ENSGFOG00000003916)	ENSGFOG00000003905	STEAP2 (ENSGFOG00000003896)	FAM237B (ENSGFOG00000003885)	CFAP69 (ENSGFOG00000003772)	ENSGFOG00000003749	GTPBP10 (ENSGFOG00000003741)	CLDN12 (ENSGFOG00000003731)	CDK14 (ENSGFOG00000003711)	FZD1 (ENSGFOG00000003702)	AKAP9 (ENSGFOG00000003475) ##22	CYP51A1 (ENSGFOG00000003428)	KRIT1 (ENSGFOG00000003400)	ANKIB1 (ENSGFOG00000003360)	GATAD1 (ENSGFOG00000003346)	PEX1 (ENSGFOG00000003279)	RBM48 (ENSGFOG00000003266)	CLXN (ENSGFOG00000003251)	ENSGFOG00000003239	CDK6 (ENSGFOG00000003222)	HEPACAM2 (ENSGFOG00000003151)	VPS50 (ENSGFOG00000002197)	CALCR (ENSGFOG00000002118)	TFPI2 (ENSGFOG00000002106)	ENSGFOG00000002076	ENSGFOG00000002023
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479.a	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00940000159917	ENSGT01100000263525.b.b.a	ENSGT00940000164410
Zebra finch	MODERN SPECIES	12	SLC25A40 (ENSTGUG00000001390)	DBF4 (ENSTGUG00000001396)	ADAM22 (ENSTGUG00000001399)	SRI (ENSTGUG00000001413)	STEAP4 (ENSTGUG00000001423)	ZNF804B (ENSTGUG00000001424)	ENSTGUG00000001425	STEAP2 (ENSTGUG00000001427)	CFAP69 (ENSTGUG00000027910)	FAM237B (ENSTGUG00000001429)	GTPBP10 (ENSTGUG00000001430)	CLDN12 (ENSTGUG00000019374)	ENSTGUG00000019557	CDK14 (ENSTGUG00000001434)	FZD1 (ENSTGUG00000001442)	AKAP9 (ENSTGUG00000001443) ##22	CYP51A1 (ENSTGUG00000001451)	KRIT1 (ENSTGUG00000001459)	ANKIB1 (ENSTGUG00000001471)	GATAD1 (ENSTGUG00000027451)	PEX1 (ENSTGUG00000001478)	RBM48 (ENSTGUG00000001489)	CLXN (ENSTGUG00000001491)	FAM133B (ENSTGUG00000001494)	HEPACAM2 (ENSTGUG00000001498)	VPS50 (ENSTGUG00000001501)	CALCR (ENSTGUG00000001514)	TFPI2 (ENSTGUG00000001515)	ENSTGUG00000001518	BET1 (ENSTGUG00000029415)	COL1A2 (ENSTGUG00000001522)
Common canary	MODERN SPECIES	5	ENSSCAG00000011512	RUNDC3B (ENSSCAG00000011519)	SLC25A40 (ENSSCAG00000011535)	DBF4 (ENSSCAG00000011541)	ADAM22 (ENSSCAG00000011618)	SRI (ENSSCAG00000012003)	STEAP4 (ENSSCAG00000012007)	ENSSCAG00000012014	STEAP2 (ENSSCAG00000012015)	CFAP69 (ENSSCAG00000012021)	FAM237B (ENSSCAG00000012026)	GTPBP10 (ENSSCAG00000012028)	CLDN12 (ENSSCAG00000012031)	CDK14 (ENSSCAG00000012042)	FZD1 (ENSSCAG00000012081)	AKAP9 (ENSSCAG00000012107) ##22	CYP51A1 (ENSSCAG00000012189)	KRIT1 (ENSSCAG00000012203)	ANKIB1 (ENSSCAG00000012218)	ENSSCAG00000012227	PEX1 (ENSSCAG00000012248)	RBM48 (ENSSCAG00000012329)	CLXN (ENSSCAG00000012331)	ENSSCAG00000012337	CDK6 (ENSSCAG00000012344)	HEPACAM2 (ENSSCAG00000012349)	VPS50 (ENSSCAG00000012354)	CALCR (ENSSCAG00000012374)	TFPI2 (ENSSCAG00000012420)	GNG11 (ENSSCAG00000012426)	ENSSCAG00000012444
Flycatcher	MODERN SPECIES	11	RUNDC3B (ENSFALG00000026817)	SLC25A40 (ENSFALG00000007808)	DBF4 (ENSFALG00000007814)	ADAM22 (ENSFALG00000007833)	SRI (ENSFALG00000007871)	STEAP4 (ENSFALG00000007886)	ZNF804B (ENSFALG00000007891)	STEAP1 (ENSFALG00000026647)	CFAP69 (ENSFALG00000007704)	FAM237B (ENSFALG00000014461)	GTPBP10 (ENSFALG00000007709)	CLDN12 (ENSFALG00000014474)	ENSFALG00000027111	CDK14 (ENSFALG00000027050)	FZD1 (ENSFALG00000014488)	AKAP9 (ENSFALG00000010490) ##22	CYP51A1 (ENSFALG00000010478)	KRIT1 (ENSFALG00000010460)	ANKIB1 (ENSFALG00000010447)	ENSFALG00000010445	PEX1 (ENSFALG00000010442)	RBM48 (ENSFALG00000010436)	ENSFALG00000010425	CDK6 (ENSFALG00000010409)	HEPACAM2 (ENSFALG00000010392)	VPS50 (ENSFALG00000010387)	CALCR (ENSFALG00000010383)	TFPI2 (ENSFALG00000010381)	ENSFALG00000010379	ENSFALG00000014556	ENSFALG00000026752
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00960000189068	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000164558.a.a	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00960000189068	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Duck	DUPLICATION
Duck	MODERN SPECIES	10	DBF4 (ENSAPLG00000004426)	ADAM22 (ENSAPLG00000004784)	SRI (ENSAPLG00000005582)	ENSAPLG00000021308	STEAP4 (ENSAPLG00000005915)	ZNF804B (ENSAPLG00000005972)	ENSAPLG00000005986	STEAP2 (ENSAPLG00000005995)	CFAP69 (ENSAPLG00000006061)	FAM237B (ENSAPLG00000002079)	GTPBP10 (ENSAPLG00000006290)	CLDN12 (ENSAPLG00000002089)	CDK14 (ENSAPLG00000006499)	FZD1 (ENSAPLG00000006538)	ENSAPLG00000006544 ##22	ENSAPLG00000006632 ##22	CYP51A1 (ENSAPLG00000007247)	ENSAPLG00000023805	KRIT1 (ENSAPLG00000007618)	ENSAPLG00000020257	ENSAPLG00000007995	GATAD1 (ENSAPLG00000018481)	ENSAPLG00000008401	PEX1 (ENSAPLG00000008576)	ENSAPLG00000009245	CDK6 (ENSAPLG00000009363)	ENSAPLG00000002252	HEPACAM2 (ENSAPLG00000009516)	VPS50 (ENSAPLG00000009583)	CALCR (ENSAPLG00000010377)	TFPI2 (ENSAPLG00000017562)
Duck	MODERN SPECIES	10	SLC25A40 (ENSAPLG00000029327)	DBF4 (ENSAPLG00000004426)	ADAM22 (ENSAPLG00000004784)	SRI (ENSAPLG00000005582)	ENSAPLG00000021308	STEAP4 (ENSAPLG00000005915)	ZNF804B (ENSAPLG00000005972)	ENSAPLG00000005986	STEAP2 (ENSAPLG00000005995)	CFAP69 (ENSAPLG00000006061)	FAM237B (ENSAPLG00000002079)	GTPBP10 (ENSAPLG00000006290)	CLDN12 (ENSAPLG00000002089)	CDK14 (ENSAPLG00000006499)	FZD1 (ENSAPLG00000006538)	ENSAPLG00000006544 ##22	ENSAPLG00000006632 ##22	CYP51A1 (ENSAPLG00000007247)	ENSAPLG00000023805	KRIT1 (ENSAPLG00000007618)	ENSAPLG00000020257	ENSAPLG00000007995	GATAD1 (ENSAPLG00000018481)	ENSAPLG00000008401	PEX1 (ENSAPLG00000008576)	ENSAPLG00000009245	CDK6 (ENSAPLG00000009363)	ENSAPLG00000002252	HEPACAM2 (ENSAPLG00000009516)	VPS50 (ENSAPLG00000009583)	CALCR (ENSAPLG00000010377)
Pink-footed goose	MODERN SPECIES		SLC25A40 (ENSABRG00000016201)	DBF4 (ENSABRG00000016192)	ADAM22 (ENSABRG00000016159)	SRI (ENSABRG00000016151)	STEAP4 (ENSABRG00000016138)	ZNF804B (ENSABRG00000016122)	ENSABRG00000016096	STEAP2 (ENSABRG00000016073)	CFAP69 (ENSABRG00000016042)	FAM237B (ENSABRG00000016030)	GTPBP10 (ENSABRG00000016020)	CLDN12 (ENSABRG00000015979)	ENSABRG00000015964	CDK14 (ENSABRG00000015934)	FZD1 (ENSABRG00000015920)	AKAP9 (ENSABRG00000012449) ##22	CYP51A1 (ENSABRG00000011095)	ENSABRG00000011057	ENSABRG00000011018	KRIT1 (ENSABRG00000010210)	ANKIB1 (ENSABRG00000009431)	GATAD1 (ENSABRG00000009022)	ENSABRG00000008935	PEX1 (ENSABRG00000008865)	RBM48 (ENSABRG00000008826)	CLXN (ENSABRG00000008786)	ENSABRG00000008761	CDK6 (ENSABRG00000008732)	ENSABRG00000008708	HEPACAM2 (ENSABRG00000008650)	VPS50 (ENSABRG00000008511)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097.j	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442.k	ENSGT00940000155380.ce
Japanese quail	MODERN SPECIES	11	SLC25A40 (ENSCJPG00005005950)	DBF4 (ENSCJPG00005005960)	ADAM22 (ENSCJPG00005005961)	SRI (ENSCJPG00005005967)	STEAP4 (ENSCJPG00005005968)	ZNF804B (ENSCJPG00005005970)	ENSCJPG00005005975	STEAP2 (ENSCJPG00005005976)	CFAP69 (ENSCJPG00005005977)	FAM237B (ENSCJPG00005005980)	GTPBP10 (ENSCJPG00005005981)	CLDN12 (ENSCJPG00005005984)	ENSCJPG00005005985	CDK14 (ENSCJPG00005005987)	FZD1 (ENSCJPG00005005989)	AKAP9 (ENSCJPG00005006018) ##22	CYP51A1 (ENSCJPG00005009307)	ENSCJPG00005009308	KRIT1 (ENSCJPG00005009309)	ANKIB1 (ENSCJPG00005009485)	GATAD1 (ENSCJPG00005009527)	ENSCJPG00005009528	PEX1 (ENSCJPG00005009529)	RBM48 (ENSCJPG00005009712)	CLXN (ENSCJPG00005009713)	ENSCJPG00005009714	CDK6 (ENSCJPG00005009715)	ENSCJPG00005009730	HEPACAM2 (ENSCJPG00005009731)	VPS50 (ENSCJPG00005009737)	CALCR (ENSCJPG00005009889)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000164558.a.a	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097.i	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442.k	ENSGT00940000155380.be
Chicken	MODERN SPECIES	11	SLC25A40 (ENSGALG00010004234)	DBF4 (ENSGALG00010004236)	ADAM22 (ENSGALG00010004242)	SRI (ENSGALG00010004454)	STEAP4 (ENSGALG00010004483)	ZNF804B (ENSGALG00010004504)	ENSGALG00010004515	STEAP2 (ENSGALG00010004576)	CFAP69 (ENSGALG00010004609)	FAM237B (ENSGALG00010004618)	GTPBP10 (ENSGALG00010004650)	CLDN12 (ENSGALG00010004730)	ENSGALG00010005262	CDK14 (ENSGALG00010004777)	FZD1 (ENSGALG00010004791)	AKAP9 (ENSGALG00010004841) ##22	CYP51A1 (ENSGALG00010005267)	ENSGALG00010004879	KRIT1 (ENSGALG00010004883)	ANKIB1 (ENSGALG00010004891)	GATAD1 (ENSGALG00010004899)	ENSGALG00010004929	PEX1 (ENSGALG00010004952)	RBM48 (ENSGALG00010004970)	CLXN (ENSGALG00010004983)	FAM133B (ENSGALG00010004991)	CDK6 (ENSGALG00010005004)	ENSGALG00010005012	HEPACAM2 (ENSGALG00010003238)	VPS50 (ENSGALG00010003243)	CALCR (ENSGALG00010003255)
Turkey	MODERN SPECIES	26	ENSMGAG00000008840	ENSMGAG00000022975	CDK6 (ENSMGAG00000008824)	ENSMGAG00000018151	ENSMGAG00000017575	ENSMGAG00000008755	ENSMGAG00000008769	ENSMGAG00000008711	ENSMGAG00000018746	ENSMGAG00000021886	ENSMGAG00000008672	ENSMGAG00000008650	ENSMGAG00000008626	ENSMGAG00000020965	ENSMGAG00000008609	ENSMGAG00000016691 ##22	ENSMGAG00000016032	ENSMGAG00000020225	ENSMGAG00000022614	ENSMGAG00000022805	ENSMGAG00000022279	ENSMGAG00000008494	ENSMGAG00000008487	ENSMGAG00000017924	ENSMGAG00000008467	ENSMGAG00000008462	ENSMGAG00000008436	ENSMGAG00000008341	DBF4 (ENSMGAG00000008326)	ENSMGAG00000008241	ENSMGAG00000021449
African ostrich	MODERN SPECIES	583								ENSSCUG00000012384	STEAP2 (ENSSCUG00000012385)	CFAP69 (ENSSCUG00000012389)	FAM237B (ENSSCUG00000012396)	GTPBP10 (ENSSCUG00000012398)	CLDN12 (ENSSCUG00000012401)	ENSSCUG00000012402	CDK14 (ENSSCUG00000012404)	AKAP9 (ENSSCUG00000012510) ##22	CYP51A1 (ENSSCUG00000012680)	ENSSCUG00000012684	KRIT1 (ENSSCUG00000012686)	ANKIB1 (ENSSCUG00000012690)	ENSSCUG00000012693	ENSSCUG00000012696	PEX1 (ENSSCUG00000012697)	RBM48 (ENSSCUG00000012700)	CLXN (ENSSCUG00000012702)	ENSSCUG00000012704	CDK6 (ENSSCUG00000012707)	ENSSCUG00000012712	HEPACAM2 (ENSSCUG00000012716)	VPS50 (ENSSCUG00000012729)	CALCR (ENSSCUG00000012745)
Australian saltwater crocodile	MODERN SPECIES		SLC25A40 (ENSCPRG00005012157)	DBF4 (ENSCPRG00005012163)	ADAM22 (ENSCPRG00005012213)	SRI (ENSCPRG00005012233)	STEAP4 (ENSCPRG00005012256)	ZNF804B (ENSCPRG00005012300)	ENSCPRG00005012369	STEAP2 (ENSCPRG00005012410)	CFAP69 (ENSCPRG00005012425)	FAM237B (ENSCPRG00005012457)	GTPBP10 (ENSCPRG00005012462)	CLDN12 (ENSCPRG00005012468)	ENSCPRG00005012471	CDK14 (ENSCPRG00005012505)	FZD1 (ENSCPRG00005012567)	AKAP9 (ENSCPRG00005012816) ##22	CYP51A1 (ENSCPRG00005013473)	ENSCPRG00005013496	KRIT1 (ENSCPRG00005013501)	ANKIB1 (ENSCPRG00005013517)	ENSCPRG00005013519	GATAD1 (ENSCPRG00005013523)	ENSCPRG00005013532	PEX1 (ENSCPRG00005013561)	RBM48 (ENSCPRG00005013710)	CLXN (ENSCPRG00005013714)	ENSCPRG00005013719	CDK6 (ENSCPRG00005013757)	ENSCPRG00005013759	HEPACAM2 (ENSCPRG00005013774)	VPS50 (ENSCPRG00005013792)
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Emydidae	ANCESTRAL SPECIES	34	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	30	DBF4 (ENSTMTG00000000463)	ADAM22 (ENSTMTG00000000410)	SRI (ENSTMTG00000000362)	STEAP4 (ENSTMTG00000000314)	ZNF804B (ENSTMTG00000000250)	ENSTMTG00000000200	STEAP2 (ENSTMTG00000000175)	CFAP69 (ENSTMTG00000000090)	FAM237B (ENSTMTG00000010707)	GTPBP10 (ENSTMTG00000010682)	CLDN12 (ENSTMTG00000010668)	ENSTMTG00000010643	CDK14 (ENSTMTG00000010605)	FZD1 (ENSTMTG00000010532)	MTERF1 (ENSTMTG00000010522)	ENSTMTG00000010504 ##22	ENSTMTG00000010340 ##22	CYP51A1 (ENSTMTG00000010251)	LRRD1 (ENSTMTG00000010220)	KRIT1 (ENSTMTG00000010183)	ANKIB1 (ENSTMTG00000010139)	GATAD1 (ENSTMTG00000010127)	ENSTMTG00000010106	PEX1 (ENSTMTG00000010005)	RBM48 (ENSTMTG00000009981)	CLXN (ENSTMTG00000009898)	ENSTMTG00000009871	CDK6 (ENSTMTG00000009854)	HEPACAM2 (ENSTMTG00000009695)	VPS50 (ENSTMTG00000009626)	CALCR (ENSTMTG00000009283)
Three-toed box turtle	MODERN SPECIES	30	ADAM22 (ENSTMTG00000000410)	SRI (ENSTMTG00000000362)	STEAP4 (ENSTMTG00000000314)	ZNF804B (ENSTMTG00000000250)	ENSTMTG00000000200	STEAP2 (ENSTMTG00000000175)	CFAP69 (ENSTMTG00000000090)	FAM237B (ENSTMTG00000010707)	GTPBP10 (ENSTMTG00000010682)	CLDN12 (ENSTMTG00000010668)	ENSTMTG00000010643	CDK14 (ENSTMTG00000010605)	FZD1 (ENSTMTG00000010532)	MTERF1 (ENSTMTG00000010522)	ENSTMTG00000010504 ##22	ENSTMTG00000010340 ##22	CYP51A1 (ENSTMTG00000010251)	LRRD1 (ENSTMTG00000010220)	KRIT1 (ENSTMTG00000010183)	ANKIB1 (ENSTMTG00000010139)	GATAD1 (ENSTMTG00000010127)	ENSTMTG00000010106	PEX1 (ENSTMTG00000010005)	RBM48 (ENSTMTG00000009981)	CLXN (ENSTMTG00000009898)	ENSTMTG00000009871	CDK6 (ENSTMTG00000009854)	HEPACAM2 (ENSTMTG00000009695)	VPS50 (ENSTMTG00000009626)	CALCR (ENSTMTG00000009283)	TFPI2 (ENSTMTG00000009209)
painted turtle	MODERN SPECIES	7	ABCB5 (ENSCPBG00000021908)	SNX13 (ENSCPBG00000021888)	AHR (ENSCPBG00000021882)	AGR3 (ENSCPBG00000021881)	AGR2 (ENSCPBG00000021880)	TSPAN13 (ENSCPBG00000021878)	BZW2 (ENSCPBG00000021873)	ANKMY2 (ENSCPBG00000021864)	ENSCPBG00000021861	SOSTDC1 (ENSCPBG00000021856)	CRPPA (ENSCPBG00000021851)	MEOX2 (ENSCPBG00000021846)	AGMO (ENSCPBG00000021836)	DGKB (ENSCPBG00000021818)	MTERF1 (ENSCPBG00000021801)	AKAP9 (ENSCPBG00000021625) ##22	CYP51A1 (ENSCPBG00000021582)	LRRD1 (ENSCPBG00000021577)	KRIT1 (ENSCPBG00000021576)	ANKIB1 (ENSCPBG00000021573)	ENSCPBG00000021571	STEAP2 (ENSCPBG00000021570)	FAM237B (ENSCPBG00000021569)	CFAP69 (ENSCPBG00000021566)	CLDN12 (ENSCPBG00000021565)	ENSCPBG00000021564	ENSCPBG00000021562	CDK14 (ENSCPBG00000021560)	FZD1 (ENSCPBG00000021555)	DBF4 (ENSCPBG00000021554)	ADAM22 (ENSCPBG00000021249)
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	11	SLC25A40 (ENSGEVG00005014656)	DBF4 (ENSGEVG00005014808)	ADAM22 (ENSGEVG00005014845)	SRI (ENSGEVG00005015068)	STEAP4 (ENSGEVG00005015101)	ZNF804B (ENSGEVG00005015128)	ENSGEVG00005015201	STEAP2 (ENSGEVG00005015241)	CFAP69 (ENSGEVG00005015335)	FAM237B (ENSGEVG00005015444)	GTPBP10 (ENSGEVG00005015481)	CDK14 (ENSGEVG00005015563)	FZD1 (ENSGEVG00005015649)	MTERF1 (ENSGEVG00005015683)	ENSGEVG00005015704 ##22	ENSGEVG00005015774 ##22	CYP51A1 (ENSGEVG00005016020)	LRRD1 (ENSGEVG00005016053)	KRIT1 (ENSGEVG00005016100)	ANKIB1 (ENSGEVG00005016152)	GATAD1 (ENSGEVG00005016194)	ENSGEVG00005016220	PEX1 (ENSGEVG00005016281)	RBM48 (ENSGEVG00005016388)	CLXN (ENSGEVG00005016407)	ENSGEVG00005016486	CDK6 (ENSGEVG00005016493)	ENSGEVG00005016511	HEPACAM2 (ENSGEVG00005016527)	VPS50 (ENSGEVG00005016656)	CALCR (ENSGEVG00005016730)
Goode s thornscrub tortoise	MODERN SPECIES	11	RUNDC3B (ENSGEVG00005014563)	SLC25A40 (ENSGEVG00005014656)	DBF4 (ENSGEVG00005014808)	ADAM22 (ENSGEVG00005014845)	SRI (ENSGEVG00005015068)	STEAP4 (ENSGEVG00005015101)	ZNF804B (ENSGEVG00005015128)	ENSGEVG00005015201	STEAP2 (ENSGEVG00005015241)	CFAP69 (ENSGEVG00005015335)	FAM237B (ENSGEVG00005015444)	GTPBP10 (ENSGEVG00005015481)	CDK14 (ENSGEVG00005015563)	FZD1 (ENSGEVG00005015649)	MTERF1 (ENSGEVG00005015683)	ENSGEVG00005015704 ##22	ENSGEVG00005015774 ##22	CYP51A1 (ENSGEVG00005016020)	LRRD1 (ENSGEVG00005016053)	KRIT1 (ENSGEVG00005016100)	ANKIB1 (ENSGEVG00005016152)	GATAD1 (ENSGEVG00005016194)	ENSGEVG00005016220	PEX1 (ENSGEVG00005016281)	RBM48 (ENSGEVG00005016388)	CLXN (ENSGEVG00005016407)	ENSGEVG00005016486	CDK6 (ENSGEVG00005016493)	ENSGEVG00005016511	HEPACAM2 (ENSGEVG00005016527)	VPS50 (ENSGEVG00005016656)
Abingdon island giant tortoise	MODERN SPECIES	2013							CFAP69 (ENSCABG00000014786)	FAM237B (ENSCABG00000014789)	GTPBP10 (ENSCABG00000014792)	CLDN12 (ENSCABG00000014827)	ENSCABG00000014829	ENSCABG00000014831	CDK14 (ENSCABG00000014834)	FZD1 (ENSCABG00000014838)	MTERF1 (ENSCABG00000014844)	AKAP9 (ENSCABG00000014901) ##22	CYP51A1 (ENSCABG00000017311)	LRRD1 (ENSCABG00000017315)	KRIT1 (ENSCABG00000017320)	ANKIB1 (ENSCABG00000017329)	GATAD1 (ENSCABG00000017338)
Chinese turtle	MODERN SPECIES	414					ENSPSIG00000001670	ZNF804B (ENSPSIG00000013424)	ENSPSIG00000013539	STEAP2 (ENSPSIG00000013812)	CFAP69 (ENSPSIG00000014296)	FAM237B (ENSPSIG00000001678)	GTPBP10 (ENSPSIG00000014996)	CLDN12 (ENSPSIG00000016363)	ENSPSIG00000016457	CDK14 (ENSPSIG00000016488)	MTERF1 (ENSPSIG00000016905)	AKAP9 (ENSPSIG00000016947) ##22	CYP51A1 (ENSPSIG00000017532)	LRRD1 (ENSPSIG00000017970)	KRIT1 (ENSPSIG00000018002)	ANKIB1 (ENSPSIG00000007300)	GATAD1 (ENSPSIG00000008568)	ENSPSIG00000008587	PEX1 (ENSPSIG00000009543)	RBM48 (ENSPSIG00000010120)	CLXN (ENSPSIG00000010125)	ENSPSIG00000010143	CDK6 (ENSPSIG00000010284)	ENSPSIG00000010290	HEPACAM2 (ENSPSIG00000010370)	VPS50 (ENSPSIG00000011338)	CALCR (ENSPSIG00000013441)
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1542														MTERF1 (ENSSPUG00000017132)	ENSSPUG00000000042 ##22	ENSSPUG00000000079 ##22	CYP51A1 (ENSSPUG00000000236)	ENSSPUG00000000257	KRIT1 (ENSSPUG00000000262)	ANKIB1 (ENSSPUG00000000300)	ENSSPUG00000000436	ENSSPUG00000000439	PEX1 (ENSSPUG00000000446)	RBM48 (ENSSPUG00000000451)	CLXN (ENSSPUG00000000462)	ENSSPUG00000000530	CDK6 (ENSSPUG00000000536)
tuatara	MODERN SPECIES	1542															MTERF1 (ENSSPUG00000017132)	ENSSPUG00000000042 ##22	ENSSPUG00000000079 ##22	CYP51A1 (ENSSPUG00000000236)	ENSSPUG00000000257	KRIT1 (ENSSPUG00000000262)	ANKIB1 (ENSSPUG00000000300)	ENSSPUG00000000436	ENSSPUG00000000439	PEX1 (ENSSPUG00000000446)	RBM48 (ENSSPUG00000000451)	CLXN (ENSSPUG00000000462)	ENSSPUG00000000530	CDK6 (ENSSPUG00000000536)
Episquamata	ANCESTRAL SPECIES	5	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000156270.h	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Laterata	ANCESTRAL SPECIES	10	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000156270.h	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Argentine black and white tegu	MODERN SPECIES	5	DBF4 (ENSSMRG00000013877)	ADAM22 (ENSSMRG00000013876)	SRI (ENSSMRG00000013704)	STEAP4 (ENSSMRG00000013703)	ENSSMRG00000013702	STEAP2 (ENSSMRG00000013701)	ENSSMRG00000013700	CFAP69 (ENSSMRG00000013699)	FAM237B (ENSSMRG00000013698)	GTPBP10 (ENSSMRG00000013697)	ENSSMRG00000013696	CLDN12 (ENSSMRG00000013695)	ENSSMRG00000013694	CDK14 (ENSSMRG00000013693)	FZD1 (ENSSMRG00000013692)	AKAP9 (ENSSMRG00000011405) ##22	CYP51A1 (ENSSMRG00000011387)	ENSSMRG00000011386	KRIT1 (ENSSMRG00000011385)	ANKIB1 (ENSSMRG00000011331)	ENSSMRG00000011330	GATAD1 (ENSSMRG00000011328)	ENSSMRG00000011324	PEX1 (ENSSMRG00000011319)	RBM48 (ENSSMRG00000011316)	CLXN (ENSSMRG00000011313)	CDK6 (ENSSMRG00000011309)	ENSSMRG00000011244	HEPACAM2 (ENSSMRG00000011230)	VPS50 (ENSSMRG00000011224)	CALCR (ENSSMRG00000011159)
Common wall lizard	MODERN SPECIES	3	ENSPMRG00000012943	STEAP2 (ENSPMRG00000012947)	ENSPMRG00000012952	CFAP69 (ENSPMRG00000012963)	ENSPMRG00000012997	ENSPMRG00000013001	ENSPMRG00000013007	GTPBP10 (ENSPMRG00000013014)	CLDN12 (ENSPMRG00000013053)	ENSPMRG00000013059	CDK14 (ENSPMRG00000013071)	ENSPMRG00000013077	FZD1 (ENSPMRG00000013085)	ENSPMRG00000013089	MTERF1 (ENSPMRG00000013092)	AKAP9 (ENSPMRG00000013537) ##22	CYP51A1 (ENSPMRG00000016769)	ENSPMRG00000016783	KRIT1 (ENSPMRG00000016844)	ANKIB1 (ENSPMRG00000017235)	ENSPMRG00000017251	ENSPMRG00000017257	ENSPMRG00000017264	ENSPMRG00000017271	PEX1 (ENSPMRG00000017282)	RBM48 (ENSPMRG00000017298)	CLXN (ENSPMRG00000017304)	ENSPMRG00000017311	CDK6 (ENSPMRG00000017323)	ENSPMRG00000017330	ENSPMRG00000017333
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00940000160479	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00390000015769.A	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.b ##22	ENSGT00930000151026	ENSGT00940000156270.h	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000159175	ENSGT00940000160249	ENSGT00530000063909.b	ENSGT00940000156889	ENSGT00940000153979.B	ENSGT00390000008042.B	ENSGT00390000008042.A.a.b	ENSGT00390000008042.A.a.a	ENSGT00390000014274	ENSGT00990000213548	ENSGT00940000155589	ENSGT00400000022250	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00730000110871.a.b ##22	ENSGT00930000151026.a	ENSGT00940000156270.h	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032.e	ENSGT00390000004541.a	ENSGT00940000159968
Elapidae_a	ANCESTRAL SPECIES	161																ENSGT00730000110871.a.b ##22	ENSGT00930000151026.a	ENSGT00940000156270.h	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032.e	ENSGT00390000004541.a	ENSGT00940000159968
Acanthophiinae	ANCESTRAL SPECIES	152																ENSGT00730000110871.a.b ##22	ENSGT00930000151026.a	ENSGT00940000156270.h	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032.e	ENSGT00390000004541.a	ENSGT00940000159968
Eastern brown snake	MODERN SPECIES	251																AKAP9 (ENSPTXG00000014345) ##22	CYP51A1 (ENSPTXG00000015827)	ENSPTXG00000015828	KRIT1 (ENSPTXG00000015829)	ANKIB1 (ENSPTXG00000015830)
Mainland tiger snake	MODERN SPECIES	398																AKAP9 (ENSNSUG00000005974) ##22	CYP51A1 (ENSNSUG00000006256)	ENSNSUG00000006257	KRIT1 (ENSNSUG00000006259)	ANKIB1 (ENSNSUG00000006261)	ENSNSUG00000006472	ENSNSUG00000006473	ENSNSUG00000006475	PEX1 (ENSNSUG00000006476)	ENSNSUG00000006477	CLXN (ENSNSUG00000006478)
Indian cobra	MODERN SPECIES	337	ABCB4 (ENSNNAG00000008726)	RUNDC3B (ENSNNAG00000008667)	SLC25A40 (ENSNNAG00000008502)	DBF4 (ENSNNAG00000008326)	ADAM22 (ENSNNAG00000008097)	SRI (ENSNNAG00000008060)	STEAP4 (ENSNNAG00000008039)	ENSNNAG00000008006	STEAP2 (ENSNNAG00000007954)	CFAP69 (ENSNNAG00000007674)	ENSNNAG00000017570	GTPBP10 (ENSNNAG00000017564)	ENSNNAG00000017556	CDK14 (ENSNNAG00000017550)	FZD1 (ENSNNAG00000017546)	AKAP9 (ENSNNAG00000017512) ##22	CYP51A1 (ENSNNAG00000017469)	ENSNNAG00000017460	ENSNNAG00000017455	ENSNNAG00000017453	ENSNNAG00000017448	ENSNNAG00000017438	ENSNNAG00000017434	ENSNNAG00000017422	RBM48 (ENSNNAG00000017416)	ENSNNAG00000017386	ENSNNAG00000017350	ARHGAP21 (ENSNNAG00000017313)	PRTFDC1 (ENSNNAG00000017299)	ENKUR (ENSNNAG00000017294)	THNSL1 (ENSNNAG00000017291)
Lizard	MODERN SPECIES	5	ENSACAG00000016088	ADAM22 (ENSACAG00000015990)	STEAP4 (ENSACAG00000015932)	ENSACAG00000035305	ENSACAG00000036076	ZNF804B (ENSACAG00000015927)	ENSACAG00000015915	STEAP2 (ENSACAG00000015895)	CFAP69 (ENSACAG00000015871)	FAM237B (ENSACAG00000029622)	GTPBP10 (ENSACAG00000015854)	CLDN12 (ENSACAG00000015849)	CDK14 (ENSACAG00000015785)	FZD1 (ENSACAG00000015779)	MTERF1 (ENSACAG00000015777)	AKAP9 (ENSACAG00000015717) ##22	ENSACAG00000026456	CYP51A1 (ENSACAG00000015660)	ENSACAG00000015646	KRIT1 (ENSACAG00000015550)	ANKIB1 (ENSACAG00000015516)	GATAD1 (ENSACAG00000015498)	ENSACAG00000015461	ENSACAG00000036308	PEX1 (ENSACAG00000015394)	RBM48 (ENSACAG00000015378)	ENSACAG00000015360	ENSACAG00000015319	CDK6 (ENSACAG00000015273)	ENSACAG00000044913	ENSACAG00000040484
Vertebrata	ANCESTRAL SPECIES																	ENSGT00730000110871.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00730000110871.b ##22
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT00940000161184	ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957
Sarcopterygii	ANCESTRAL SPECIES		ENSGT00940000161184	ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT01050000244890.b	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00470000042293.a.a	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d
Tetrapoda	ANCESTRAL SPECIES	7	ENSGT00940000161184	ENSGT00390000007526	ENSGT00390000017837.b	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT01050000244890.b	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968	ENSGT00730000111097	ENSGT00940000157957	ENSGT00390000013973.A.a.d	ENSGT01100000263551.b.b.b	ENSGT00390000003442
Anura	ANCESTRAL SPECIES	11	ENSGT01060000248556.C	ENSGT00940000161184	ENSGT00950000183184.a.b	ENSGT00940000156737	ENSGT00940000155958	ENSGT00410000028469	ENSGT00940000160479	ENSGT00390000008042.B.a	ENSGT00390000008042.B.b	ENSGT00940000153979.B	ENSGT00550000075134	ENSGT00940000164984.a	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT01050000244890.b	ENSGT00940000167569	ENSGT00550000075032	ENSGT00390000004541	ENSGT00940000159968
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000026865	MINDY3 (ENSLLEG00000026640)	ENSLLEG00000026579	ENSLLEG00000026564	ENSLLEG00000026539	ENSLLEG00000026526	ZNF804B (ENSLLEG00000026481)	ENSLLEG00000026452	ENSLLEG00000026403	ENSLLEG00000026361	SRI (ENSLLEG00000026267)	DUS3L (ENSLLEG00000026201)	ENSLLEG00000026051	CDK14 (ENSLLEG00000025644)	FZD1 (ENSLLEG00000025583)	ENSLLEG00000024045 ##22	CYP51A1 (ENSLLEG00000023748)	ENSLLEG00000023033	ENSLLEG00000022388	ANKIB1 (ENSLLEG00000022111)	GATAD1 (ENSLLEG00000021854)	ENSLLEG00000021736	ENSLLEG00000021630	PEX1 (ENSLLEG00000021051)	RBM48 (ENSLLEG00000020935)	ENSLLEG00000020516	RPL14 (ENSLLEG00000020315)	ENTPD3 (ENSLLEG00000020143)	GGCT (ENSLLEG00000020077)	NOD1 (ENSLLEG00000019941)	ZNRF2 (ENSLLEG00000019867)
Frog	MODERN SPECIES	6	nmt2 (ENSXETG00000014634)	fam171a1 (ENSXETG00000020280)	itga8 (ENSXETG00000020282)	mindy3 (ENSXETG00000020297)	ENSXETG00000037482	znf804b (ENSXETG00000008795)	ENSXETG00000042179	steap4.1 (ENSXETG00000027407)	steap4.2 (ENSXETG00000008794)	sri (ENSXETG00000008793)	dus3l (ENSXETG00000027405)	pttg1ip2 (ENSXETG00000003470)	cdk14 (ENSXETG00000003466)	ENSXETG00000031084	mterf1 (ENSXETG00000039027)	akap9 (ENSXETG00000003440) ##22	cyp51a1 (ENSXETG00000003432)	lrrd1 (ENSXETG00000030611)	krit1 (ENSXETG00000030227)	ankib1 (ENSXETG00000033950)	ENSXETG00000048946	ENSXETG00000037958	rbm48 (ENSXETG00000003421)	pex1 (ENSXETG00000003420)	grina (ENSXETG00000030159)	rpp38 (ENSXETG00000003419)	gatad1 (ENSXETG00000018528)	fam133b (ENSXETG00000027391)	cdk6 (ENSXETG00000018529)	hepacam2 (ENSXETG00000013881)	ENSXETG00000048147
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00730000110871.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00730000110871.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	322												ENSGT00940000164984	ENSGT00940000157640	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT01050000244890.b	ENSGT00390000018554
Clupeocephala	ANCESTRAL SPECIES	455														ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A
Euteleosteomorpha	ANCESTRAL SPECIES	241										ENSGT00940000161408	ENSGT00950000183051.a.a.a	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00530000064067
Acanthomorphata	ANCESTRAL SPECIES	22	ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00390000013102.a.b	ENSGT00940000171595	ENSGT00390000010641.i.b
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00550000074698	ENSGT00940000155113.a.a	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b	ENSGT01050000244883.A.b
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00940000177924	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000155784.C.u.b	ENSGT00950000182914.a.a.a.c.b	ENSGT01040000240444.B.a	ENSGT00390000004554	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154664.h.n.c	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000160387	ENSGT00940000156500	ENSGT00940000163253.a.a.b	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT01010000222656	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT00390000013102.a.b
Tetraodontidae	ANCESTRAL SPECIES	69							ENSGT00390000004554.ab	ENSGT00950000183081.b.i.b	ENSGT00390000014944.b	ENSGT00940000154491.c.b.b	ENSGT00730000112601	ENSGT00940000160042	ENSGT00940000156500	ENSGT00550000075134	ENSGT00530000063817.a	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a ##22	ENSGT00530000063721.A	ENSGT00940000165143.a.b	ENSGT00390000010118.c.b	ENSGT00390000008281	ENSGT00390000009042	ENSGT00940000157485	ENSGT00390000014542	ENSGT00940000157343.a.a	ENSGT00940000159463.n.b	ENSGT00390000002390.b.f	ENSGT00770000121795	ENSGT01050000244883.A.b	ENSGT00940000163756.c.a	ENSGT00940000166158.a.a
Fugu	MODERN SPECIES	3	crabp2b (ENSTRUG00000011951)	mrps21 (ENSTRUG00000022345)	rprd2a (ENSTRUG00000012016)	celf3a (ENSTRUG00000012064)	cers2a (ENSTRUG00000012292)	cfap20 (ENSTRUG00000026308)	dgat1a (ENSTRUG00000012581)	zgc:63863 (ENSTRUG00000012626)	ENSTRUG00000031799	SCRT1 (ENSTRUG00000012719)	ENSTRUG00000012739	ENSTRUG00000026302	cndp2 (ENSTRUG00000012921)	ENSTRUG00000027682	MTERF1 (ENSTRUG00000030432)	ENSTRUG00000025255 ##22	ENSTRUG00000022386 ##22	krit1 (ENSTRUG00000013413)	rpz2 (ENSTRUG00000021627)	si:dkey-266f7.9 (ENSTRUG00000019794)	mrpl9 (ENSTRUG00000031887)	prcc (ENSTRUG00000013509)	ENSTRUG00000020123	mrpl24 (ENSTRUG00000013588)	ENSTRUG00000013629	mef2d (ENSTRUG00000013784)	ENSTRUG00000020056	ENSTRUG00000031020	ENSTRUG00000013950	ENSTRUG00000013996	ENSTRUG00000021889
Osteoglossiformes	ANCESTRAL SPECIES	6	ENSGT00950000183051.a.a.b	ENSGT00920000149172	ENSGT00940000156446	ENSGT00940000160484	ENSGT00940000165015	ENSGT00510000051337	ENSGT00940000167743	ENSGT00390000004886	ENSGT00940000153979.B	ENSGT00940000166686	ENSGT00940000164984	ENSGT00940000157640.b	ENSGT00940000162584	ENSGT00530000063817.a	ENSGT00730000110871.a.a.a.a.kb ##22	ENSGT00730000110871.b ##22	ENSGT00730000110871.a.a.a.a.jb ##22	ENSGT00930000151026	ENSGT00530000063721.A	ENSGT00940000157621.v	ENSGT00390000018554	ENSGT00940000155549.a.a	ENSGT00940000157893	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a.i.b	ENSGT01030000235077	ENSGT00940000176888	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321
Asian bonytongue	MODERN SPECIES	15	nfatc1 (ENSSFOG00015009385)	atp9b (ENSSFOG00015009257)	SALL3 (ENSSFOG00015009159)	ENSSFOG00015009133	ENSSFOG00015032768	ENSSFOG00015030865	ZNF236 (ENSSFOG00015008994)	ZNF516 (ENSSFOG00015008969)	tshz1 (ENSSFOG00015008951)	cndp2 (ENSSFOG00015008900)	ENSSFOG00015008859	dus3l (ENSSFOG00015008797)	cdk14 (ENSSFOG00015008700)	FZD1 (ENSSFOG00015008660)	MTERF1 (ENSSFOG00015008650)	ENSSFOG00015031317 ##22	ENSSFOG00015008521 ##22	cyp51 (ENSSFOG00015008396)	krit1 (ENSSFOG00015008334)	ANKIB1 (ENSSFOG00015008273)	gatad1 (ENSSFOG00015008239)	CSMD3 (ENSSFOG00015008801)	ENSSFOG00015009120	trps1 (ENSSFOG00015009142)	eif3ha (ENSSFOG00015009193)	utp23 (ENSSFOG00015009226)	rad21b (ENSSFOG00015009246)	ENSSFOG00015009295	SLC30A8 (ENSSFOG00015009324)	med30 (ENSSFOG00015029678)	ext1b (ENSSFOG00015030667)
Ciona	ANCESTRAL SPECIES																	ENSGT00730000110871 #22
Ciona intestinalis	MODERN SPECIES	1	ENSCING00000014827	ENSCING00000019402	ENSCING00000009060	ENSCING00000016900	ENSCING00000009059	ENSCING00000021742	ENSCING00000009054	ENSCING00000009053	ENSCING00000009051	ENSCING00000014838	ENSCING00000019796	ENSCING00000022689	ENSCING00000009050	ENSCING00000009049	ENSCING00000000994	ENSCING00000020924 #22	ENSCING00000014854	ENSCING00000024021	ENSCING00000018869	ENSCING00000020978	ENSCING00000024476	ENSCING00000019858	ENSCING00000014858	ENSCING00000005904	ENSCING00000005858	ENSCING00000020720	ENSCING00000005854	ENSCING00000022944	ENSCING00000005838	r27a (ENSCING00000005834)	ENSCING00000014899