Chordata	ANCESTRAL SPECIES																	ENSGT00530000063823 #22
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000063823.b.a #22
Gnathostomata	ANCESTRAL SPECIES	430										ENSGT00940000164245	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23
Euteleostomi	ANCESTRAL SPECIES	310							ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375
Sarcopterygii	ANCESTRAL SPECIES	27	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00970000197463	ENSGT00580000082227	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Tetrapoda	ANCESTRAL SPECIES	16	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00970000197463	ENSGT00580000082227	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Amniota	ANCESTRAL SPECIES	25	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00580000082227	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Mammalia	ANCESTRAL SPECIES	13	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Theria	ANCESTRAL SPECIES	17	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162251 #12	ENSGT00940000162619 #11	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Eutheria	ANCESTRAL SPECIES	31	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162251 #12	ENSGT00940000162619 #11	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Glires	ANCESTRAL SPECIES	6	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Rodentia_B	ANCESTRAL SPECIES	21	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Myomorpha	ANCESTRAL SPECIES	22	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Lesser Egyptian jerboa	MODERN SPECIES	127	ENSJJAG00000015382 #7	Irf8 (ENSJJAG00000022546) #8	Foxf1 (ENSJJAG00000017904) #9	Mthfsd (ENSJJAG00000014622) #10	Foxc2 (ENSJJAG00000015847) #11	Foxl1 (ENSJJAG00000009393) #12	1700018B08Rik (ENSJJAG00000023547) #13	Fbxo31 (ENSJJAG00000022900) #14	ENSJJAG00000018452 #15	Zcchc14 (ENSJJAG00000021656) #16	Jph3 (ENSJJAG00000024319) #17	Klhdc4 (ENSJJAG00000018071) #18	Slc7a5 (ENSJJAG00000013270) #19	Car5a (ENSJJAG00000014977) #20	Banp (ENSJJAG00000006272) #21	Zfpm1 (ENSJJAG00000008137) #22	Trhr2 (ENSJJAG00000000896) #23	Zc3h18 (ENSJJAG00000024122) #24	Il17c (ENSJJAG00000021149) #25	Cyba (ENSJJAG00000001098) #26	Mvd (ENSJJAG00000024235) #27	Snai3 (ENSJJAG00000019934) #28	Rnf166 (ENSJJAG00000022145) #29	Ctu2 (ENSJJAG00000023678) #30	Piezo1 (ENSJJAG00000014795) #31	Cdt1 (ENSJJAG00000023219) #32	Aprt (ENSJJAG00000018585) #33	Galns (ENSJJAG00000011252) #34	Trappc2l (ENSJJAG00000017487) #35	ENSJJAG00000017894 #36	Pabpn1l (ENSJJAG00000006433) #37
Muroidea	ANCESTRAL SPECIES	19	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.c.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.c.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Northern American deer mouse	MODERN SPECIES	18	Irf8 (ENSPEMG00000023561) #8	Foxf1 (ENSPEMG00000015294) #9	Mthfsd (ENSPEMG00000023762) #10	Foxc2 (ENSPEMG00000007756) #11	Foxl1 (ENSPEMG00000009552) #12	1700018B08Rik (ENSPEMG00000009394) #13	Fbxo31 (ENSPEMG00000011216) #14	ENSPEMG00000026970 #15	Zcchc14 (ENSPEMG00000008789) #16	Jph3 (ENSPEMG00000023682) #17	Klhdc4 (ENSPEMG00000011101) #18	Slc7a5 (ENSPEMG00000023626) #19	Car5a (ENSPEMG00000023182) #20	Banp (ENSPEMG00000011431) #21	Zfp469 (ENSPEMG00000029136)	Zfpm1 (ENSPEMG00000000468) #22	Trhr2 (ENSPEMG00000009899) #23	Zc3h18 (ENSPEMG00000001663) #24	Il17c (ENSPEMG00000019129) #25	Cyba (ENSPEMG00000007932) #26	Mvd (ENSPEMG00000018457) #27	Snai3 (ENSPEMG00000029324) #28	Rnf166 (ENSPEMG00000018748) #29	Ctu2 (ENSPEMG00000016552) #30	Cdt1 (ENSPEMG00000010002) #32	Aprt (ENSPEMG00000007366) #33	Galns (ENSPEMG00000018911) #34	Trappc2l (ENSPEMG00000026189) #35	Pabpn1l (ENSPEMG00000016624) #37	Cbfa2t3 (ENSPEMG00000008145)	Acsf3 (ENSPEMG00000014608)
Prairie vole	MODERN SPECIES	12	Emc8 (ENSMOCG00000009432)	Cox4i1 (ENSMOCG00000003253) #7	Irf8 (ENSMOCG00000016592) #8	Foxf1 (ENSMOCG00000020101) #9	Mthfsd (ENSMOCG00000004916) #10	1700018B08Rik (ENSMOCG00000003707) #13	Fbxo31 (ENSMOCG00000007047) #14	ENSMOCG00000012705 #15	Zcchc14 (ENSMOCG00000021269) #16	Jph3 (ENSMOCG00000010353) #17	Klhdc4 (ENSMOCG00000015384) #18	ENSMOCG00000022244	Slc7a5 (ENSMOCG00000011349) #19	Car5a (ENSMOCG00000017487) #20	Banp (ENSMOCG00000015773) #21	Zfpm1 (ENSMOCG00000001709) #22	Trhr2 (ENSMOCG00000009584) #23	Zc3h18 (ENSMOCG00000018824) #24	Il17c (ENSMOCG00000022236) #25	Cyba (ENSMOCG00000015857) #26	Mvd (ENSMOCG00000022955) #27	Snai3 (ENSMOCG00000003536) #28	Rnf166 (ENSMOCG00000018742) #29	Ctu2 (ENSMOCG00000004755) #30	Piezo1 (ENSMOCG00000008460) #31	Cdt1 (ENSMOCG00000008713) #32	Aprt (ENSMOCG00000000737) #33	Galns (ENSMOCG00000009269) #34	ENSMOCG00000017231 #35	Pabpn1l (ENSMOCG00000007955) #37	Cbfa2t3 (ENSMOCG00000021007)
Cricetinae	ANCESTRAL SPECIES	16	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.c.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Golden Hamster	MODERN SPECIES	654	Cox4i1 (ENSMAUG00000008155) #7	Irf8 (ENSMAUG00000014953) #8	Foxf1 (ENSMAUG00000011152) #9	Mthfsd (ENSMAUG00000007528) #10	Foxc2 (ENSMAUG00000009373) #11	Foxl1 (ENSMAUG00000009223) #12	1700018B08Rik (ENSMAUG00000007616) #13	Fbxo31 (ENSMAUG00000012180) #14	ENSMAUG00000017498 #15	Zcchc14 (ENSMAUG00000005513) #16	Jph3 (ENSMAUG00000010275) #17	Klhdc4 (ENSMAUG00000008097) #18	Slc7a5 (ENSMAUG00000020401) #19	Car5a (ENSMAUG00000022159) #20	Banp (ENSMAUG00000008039) #21	Zfpm1 (ENSMAUG00000017930) #22	Trhr2 (ENSMAUG00000018412) #23	Zc3h18 (ENSMAUG00000015828) #24	Il17c (ENSMAUG00000010465) #25	Cyba (ENSMAUG00000020568) #26	Mvd (ENSMAUG00000020072) #27	Snai3 (ENSMAUG00000001685) #28	Rnf166 (ENSMAUG00000018616) #29	Ctu2 (ENSMAUG00000020048) #30	Piezo1 (ENSMAUG00000021717) #31	Cdt1 (ENSMAUG00000022237) #32	Aprt (ENSMAUG00000021299) #33	Galns (ENSMAUG00000021453) #34	Trappc2l (ENSMAUG00000018071) #35	Pabpn1l (ENSMAUG00000014032) #37	Cbfa2t3 (ENSMAUG00000016035)
Chinese hamster chok1gshd	MODERN SPECIES	112	Irf8 (ENSCGRG00001014127) #8	Foxf1 (ENSCGRG00001012787) #9	Mthfsd (ENSCGRG00001017690) #10	Foxc2 (ENSCGRG00001011497) #11	Foxl1 (ENSCGRG00001003256) #12	1700018B08Rik (ENSCGRG00001019288) #13	Fbxo31 (ENSCGRG00001002629) #14	ENSCGRG00001016025 #15	Zcchc14 (ENSCGRG00001019291) #16	Jph3 (ENSCGRG00001004788) #17	Klhdc4 (ENSCGRG00001013931) #18	Slc7a5 (ENSCGRG00001021000) #19	Car5a (ENSCGRG00001021706) #20	Banp (ENSCGRG00001012363) #21	Zfp469 (ENSCGRG00001002538)	Zfpm1 (ENSCGRG00001021400) #22	Trhr2 (ENSCGRG00001001827) #23	Zc3h18 (ENSCGRG00001019104) #24	Il17c (ENSCGRG00001024519) #25	Cyba (ENSCGRG00001001311) #26	Mvd (ENSCGRG00001021902) #27	Snai3 (ENSCGRG00001011389) #28	Rnf166 (ENSCGRG00001013400) #29	Ctu2 (ENSCGRG00001018738) #30	Piezo1 (ENSCGRG00001016495) #31	Cdt1 (ENSCGRG00001016566) #32	APRT (ENSCGRG00001009398) #33	Galns (ENSCGRG00001009443) #34	Trappc2l (ENSCGRG00001024305) #35	Pabpn1l (ENSCGRG00001013211) #37	Cbfa2t3 (ENSCGRG00001006537)
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Mus	ANCESTRAL SPECIES	6	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.bb.b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
spretus	MODERN SPECIES	17	Cox4i1 (MGP_SPRETEiJ_G0032759) #7	Irf8 (MGP_SPRETEiJ_G0032760) #8	Foxf1 (MGP_SPRETEiJ_G0032761) #9	Mthfsd (MGP_SPRETEiJ_G0032762) #10	Foxc2 (MGP_SPRETEiJ_G0032763) #11	Foxl1 (MGP_SPRETEiJ_G0032764) #12	1700018B08Rik (MGP_SPRETEiJ_G0032765) #13	Fbxo31 (MGP_SPRETEiJ_G0032766) #14	MGP_SPRETEiJ_G0032767 #15	Zcchc14 (MGP_SPRETEiJ_G0032768) #16	Jph3 (MGP_SPRETEiJ_G0032769) #17	Klhdc4 (MGP_SPRETEiJ_G0032770) #18	Slc7a5 (MGP_SPRETEiJ_G0032771) #19	Car5a (MGP_SPRETEiJ_G0032772) #20	Banp (MGP_SPRETEiJ_G0032773) #21	Zfpm1 (MGP_SPRETEiJ_G0032774) #22	Trhr2 (MGP_SPRETEiJ_G0032775) #23	Zc3h18 (MGP_SPRETEiJ_G0032776) #24	Il17c (MGP_SPRETEiJ_G0032777) #25	Cyba (MGP_SPRETEiJ_G0032778) #26	Mvd (MGP_SPRETEiJ_G0032779) #27	Snai3 (MGP_SPRETEiJ_G0032780) #28	Rnf166 (MGP_SPRETEiJ_G0032781) #29	Ctu2 (MGP_SPRETEiJ_G0032782) #30	Piezo1 (MGP_SPRETEiJ_G0032783) #31	Cdt1 (MGP_SPRETEiJ_G0032784) #32	Aprt (MGP_SPRETEiJ_G0032785) #33	Galns (MGP_SPRETEiJ_G0032786) #34	Trappc2l (MGP_SPRETEiJ_G0032787) #35	Pabpn1l (MGP_SPRETEiJ_G0032788) #37	Cbfa2t3 (MGP_SPRETEiJ_G0032789)
Steppe mouse	MODERN SPECIES	45	Irf8 (ENSMSIG00000016542) #8	Foxf1 (ENSMSIG00000016514) #9	Mthfsd (ENSMSIG00000016360) #10	Foxc2 (ENSMSIG00000016350) #11	Foxl1 (ENSMSIG00000016347) #12	ENSMSIG00000016303 #13	Fbxo31 (ENSMSIG00000016280) #14	ENSMSIG00000016260 #15	Zcchc14 (ENSMSIG00000016219) #16	Jph3 (ENSMSIG00000016197) #17	Klhdc4 (ENSMSIG00000016100) #18	Slc7a5 (ENSMSIG00000016074) #19	Car5a (ENSMSIG00000016047) #20	Banp (ENSMSIG00000015888) #21	Zfp469 (ENSMSIG00000015864)	Zfpm1 (ENSMSIG00000015839) #22	Trhr2 (ENSMSIG00000015824) #23	Zc3h18 (ENSMSIG00000015603) #24	Il17c (ENSMSIG00000015592) #25	Cyba (ENSMSIG00000015551) #26	Mvd (ENSMSIG00000015493) #27	Snai3 (ENSMSIG00000015478) #28	Rnf166 (ENSMSIG00000015462) #29	Ctu2 (ENSMSIG00000015427) #30	Piezo1 (ENSMSIG00000015362) #31	Cdt1 (ENSMSIG00000015304) #32	Aprt (ENSMSIG00000015264) #33	ENSMSIG00000015261	Galns (ENSMSIG00000015212) #34	Trappc2l (ENSMSIG00000015198) #35	Pabpn1l (ENSMSIG00000015174) #37
Mouse	MODERN SPECIES	17	Irf8 (ENSMUSG00000041515) #8	Foxf1 (ENSMUSG00000042812) #9	Mthfsd (ENSMUSG00000031816) #10	Foxc2 (ENSMUSG00000046714) #11	Foxl1 (ENSMUSG00000097084) #12	1700018B08Rik (ENSMUSG00000031809) #13	Fbxo31 (ENSMUSG00000052934) #14	Map1lc3b (ENSMUSG00000031812)	Zcchc14 (ENSMUSG00000061410) #16	Jph3 (ENSMUSG00000025318) #17	Klhdc4 (ENSMUSG00000040263) #18	Slc7a5 (ENSMUSG00000040010) #19	Car5a (ENSMUSG00000025317) #20	Banp (ENSMUSG00000025316) #21	Zfp469 (ENSMUSG00000043903)	Zfpm1 (ENSMUSG00000049577) #22	Trhr2 (ENSMUSG00000039079) #23	Zc3h18 (ENSMUSG00000017478) #24	Il17c (ENSMUSG00000046108) #25	Cyba (ENSMUSG00000006519) #26	Mvd (ENSMUSG00000006517) #27	Snai3 (ENSMUSG00000006587) #28	Rnf166 (ENSMUSG00000014470) #29	Ctu2 (ENSMUSG00000049482) #30	Piezo1 (ENSMUSG00000014444) #31	Cdt1 (ENSMUSG00000006585) #32	Aprt (ENSMUSG00000006589) #33	Galns (ENSMUSG00000015027) #34	Trappc2l (ENSMUSG00000015013) #35	Pabpn1l (ENSMUSG00000069867) #37	Cbfa2t3 (ENSMUSG00000006362)
Ryukyu mouse	MODERN SPECIES	17	Cox4i1 (MGP_CAROLIEiJ_G0031641) #7	Irf8 (MGP_CAROLIEiJ_G0031642) #8	Foxf1 (MGP_CAROLIEiJ_G0031643) #9	Mthfsd (MGP_CAROLIEiJ_G0031644) #10	Foxc2 (MGP_CAROLIEiJ_G0031645) #11	Foxl1 (MGP_CAROLIEiJ_G0031646) #12	1700018B08Rik (MGP_CAROLIEiJ_G0031647) #13	Fbxo31 (MGP_CAROLIEiJ_G0031648) #14	MGP_CAROLIEiJ_G0031649 #15	Zcchc14 (MGP_CAROLIEiJ_G0031650) #16	Jph3 (MGP_CAROLIEiJ_G0031651) #17	Klhdc4 (MGP_CAROLIEiJ_G0031652) #18	Slc7a5 (MGP_CAROLIEiJ_G0031653) #19	Car5a (MGP_CAROLIEiJ_G0031654) #20	Banp (MGP_CAROLIEiJ_G0031655) #21	Zfpm1 (MGP_CAROLIEiJ_G0031656) #22	Trhr2 (MGP_CAROLIEiJ_G0031657) #23	Zc3h18 (MGP_CAROLIEiJ_G0031658) #24	Il17c (MGP_CAROLIEiJ_G0031659) #25	Cyba (MGP_CAROLIEiJ_G0031660) #26	Mvd (MGP_CAROLIEiJ_G0031661) #27	Snai3 (MGP_CAROLIEiJ_G0031662) #28	Rnf166 (MGP_CAROLIEiJ_G0031663) #29	Ctu2 (MGP_CAROLIEiJ_G0031664) #30	Piezo1 (MGP_CAROLIEiJ_G0031665) #31	Cdt1 (MGP_CAROLIEiJ_G0031666) #32	Aprt (MGP_CAROLIEiJ_G0031667) #33	Galns (MGP_CAROLIEiJ_G0031668) #34	Trappc2l (MGP_CAROLIEiJ_G0031669) #35	Pabpn1l (MGP_CAROLIEiJ_G0031670) #37	Cbfa2t3 (MGP_CAROLIEiJ_G0031671)
Shrew mouse	MODERN SPECIES	12	Cox4i1 (MGP_PahariEiJ_G0023239) #7	Irf8 (MGP_PahariEiJ_G0023240) #8	Foxf1 (MGP_PahariEiJ_G0023241) #9	Mthfsd (MGP_PahariEiJ_G0023242) #10	Foxc2 (MGP_PahariEiJ_G0023243) #11	Foxl1 (MGP_PahariEiJ_G0023244) #12	1700018B08Rik (MGP_PahariEiJ_G0023245) #13	Fbxo31 (MGP_PahariEiJ_G0023246) #14	MGP_PahariEiJ_G0023247 #15	MGP_PahariEiJ_G0023248 #16	Jph3 (MGP_PahariEiJ_G0023249) #17	Klhdc4 (MGP_PahariEiJ_G0023250) #18	Slc7a5 (MGP_PahariEiJ_G0023251) #19	Car5a (MGP_PahariEiJ_G0023252) #20	Banp (MGP_PahariEiJ_G0023253) #21	Zfpm1 (MGP_PahariEiJ_G0023254) #22	Trhr2 (MGP_PahariEiJ_G0023255) #23	Zc3h18 (MGP_PahariEiJ_G0023256) #24	Il17c (MGP_PahariEiJ_G0023257) #25	Cyba (MGP_PahariEiJ_G0023258) #26	Mvd (MGP_PahariEiJ_G0023259) #27	Snai3 (MGP_PahariEiJ_G0023260) #28	Rnf166 (MGP_PahariEiJ_G0023261) #29	Ctu2 (MGP_PahariEiJ_G0023262) #30	Piezo1 (MGP_PahariEiJ_G0023263) #31	Cdt1 (MGP_PahariEiJ_G0023264) #32	Aprt (MGP_PahariEiJ_G0023265) #33	Galns (MGP_PahariEiJ_G0023266) #34	Trappc2l (MGP_PahariEiJ_G0023267) #35	Pabpn1l (MGP_PahariEiJ_G0023268) #37	Cbfa2t3 (MGP_PahariEiJ_G0023269)
Rat	MODERN SPECIES	10	Mthfsd (ENSRNOG00000046443) #10	Foxc2 (ENSRNOG00000047446) #11	Foxl1 (ENSRNOG00000047125) #12	Nhp2-ps6 (ENSRNOG00000067354)	LOC687560 (ENSRNOG00000050028) #13	Fbxo31 (ENSRNOG00000042274) #14	Map1lc3b (ENSRNOG00000017905) #15	Zcchc14 (ENSRNOG00000018226) #16	Jph3 (ENSRNOG00000018784) #17	Klhdc4 (ENSRNOG00000018801) #18	Slc7a5 (ENSRNOG00000018824) #19	Car5a (ENSRNOG00000019098) #20	Banp (ENSRNOG00000019140) #21	AABR07044065.1 (ENSRNOG00000028578)	ENSRNOG00000070694	Zfpm1 (ENSRNOG00000043077) #22	Mlnr (ENSRNOG00000012789) #23	Zc3h18 (ENSRNOG00000028501) #24	Il17c (ENSRNOG00000013007) #25	Cyba (ENSRNOG00000013014) #26	Mvd (ENSRNOG00000013376) #27	Snai3 (ENSRNOG00000013586) #28	Rnf166 (ENSRNOG00000013777) #29	Ctu2 (ENSRNOG00000051531) #30	Piezo1 (ENSRNOG00000056786) #31	Cdt1 (ENSRNOG00000013970) #32	Aprt (ENSRNOG00000014405) #33	Galns (ENSRNOG00000014461) #34	Trappc2l (ENSRNOG00000014581) #35	Pabpn1l (ENSRNOG00000029558) #37	Cbfa2t3 (ENSRNOG00000014723)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1108			Foxf1 (ENSNGAG00000021924) #9	Mthfsd (ENSNGAG00000001620) #10	Foxc2 (ENSNGAG00000001373) #11	Foxl1 (ENSNGAG00000021491) #12	1700018B08Rik (ENSNGAG00000008821) #13	Fbxo31 (ENSNGAG00000017629) #14	ENSNGAG00000015064 #15	Zcchc14 (ENSNGAG00000021549) #16	Jph3 (ENSNGAG00000015022) #17	Klhdc4 (ENSNGAG00000023070) #18	Slc7a5 (ENSNGAG00000002375) #19	Car5a (ENSNGAG00000023072) #20	Banp (ENSNGAG00000022041) #21	Zfpm1 (ENSNGAG00000015027) #22	Trhr2 (ENSNGAG00000021694) #23	Zc3h18 (ENSNGAG00000011518) #24	Il17c (ENSNGAG00000013943) #25	Cyba (ENSNGAG00000009875) #26	Mvd (ENSNGAG00000023194) #27	Snai3 (ENSNGAG00000023039) #28	Rnf166 (ENSNGAG00000021980) #29	Ctu2 (ENSNGAG00000023366) #30	Piezo1 (ENSNGAG00000017101) #31	Cdt1 (ENSNGAG00000022315) #32	ENSNGAG00000016112 #33	Galns (ENSNGAG00000022107) #34	ENSNGAG00000024083 #35	Pabpn1l (ENSNGAG00000023992) #37	Cbfa2t3 (ENSNGAG00000016320)
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887.f #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Marmotini	ANCESTRAL SPECIES	17	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C.j #19	ENSGT00940000155581.C.i #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887.f #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d.i #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Marmotini_b	ANCESTRAL SPECIES	64	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C.j #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887.f #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d.i #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Arctic ground squirrel	MODERN SPECIES	254	FOXF1 (ENSUPAG00010014974) #9	MTHFSD (ENSUPAG00010014981) #10	FOXC2 (ENSUPAG00010015015) #11	FOXL1 (ENSUPAG00010015020) #12	ENSUPAG00010015027 #13	FBXO31 (ENSUPAG00010015042) #14	ENSUPAG00010015075 ##15	ZCCHC14 (ENSUPAG00010015093) #16	JPH3 (ENSUPAG00010015122) #17	KLHDC4 (ENSUPAG00010015135) #18	ENSUPAG00010015149 #19	ENSUPAG00010015155 #19	CA5A (ENSUPAG00010015163) #20	BANP (ENSUPAG00010015194) #21	ENSUPAG00010015213	ZFPM1 (ENSUPAG00010015217) #22	ZC3H18 (ENSUPAG00010015235) #24	IL17C (ENSUPAG00010015474) #25	CYBA (ENSUPAG00010015480) #26	MVD (ENSUPAG00010015487) #27	SNAI3 (ENSUPAG00010015507) #28	RNF166 (ENSUPAG00010015514) #29	CTU2 (ENSUPAG00010015526) #30	ENSUPAG00010015536 #31	CDT1 (ENSUPAG00010015658) #32	APRT (ENSUPAG00010015685) #33	GALNS (ENSUPAG00010015693) #34	ENSUPAG00010015728 #35	PABPN1L (ENSUPAG00010015748) #37	CBFA2T3 (ENSUPAG00010015810)	ACSF3 (ENSUPAG00010015909)
Squirrel	MODERN SPECIES	241	EMC8 (ENSSTOG00000024929)	COX4I1 (ENSSTOG00000024338) #7	IRF8 (ENSSTOG00000028363) #8	MTHFSD (ENSSTOG00000013775) #10	FOXC2 (ENSSTOG00000028715) #11	FOXL1 (ENSSTOG00000024336) #12	ENSSTOG00000033877 #13	FBXO31 (ENSSTOG00000012185) #14	ENSSTOG00000014826 ##15	ZCCHC14 (ENSSTOG00000006167) #16	JPH3 (ENSSTOG00000005619) #17	KLHDC4 (ENSSTOG00000016140) #18	ENSSTOG00000025706 #19	CA5A (ENSSTOG00000029850) #20	BANP (ENSSTOG00000009245) #21	ZFPM1 (ENSSTOG00000027139) #22	ZC3H18 (ENSSTOG00000022431) #24	IL17C (ENSSTOG00000022407) #25	CYBA (ENSSTOG00000020835) #26	MVD (ENSSTOG00000016332) #27	SNAI3 (ENSSTOG00000021205) #28	RNF166 (ENSSTOG00000003956) #29	CTU2 (ENSSTOG00000003978) #30	PIEZO1 (ENSSTOG00000004005) #31	CDT1 (ENSSTOG00000027593) #32	APRT (ENSSTOG00000010846) #33	GALNS (ENSSTOG00000025556) #34	TRAPPC2L (ENSSTOG00000007271) #35	PABPN1L (ENSSTOG00000020814) #37	CBFA2T3 (ENSSTOG00000021485)	ACSF3 (ENSSTOG00000027519)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005025133	IRF8 (ENSSVLG00005025108) #8	FOXF1 (ENSSVLG00005025093) #9	MTHFSD (ENSSVLG00005025053) #10	FOXC2 (ENSSVLG00005025014) #11	FOXL1 (ENSSVLG00005024997) #12	FBXO31 (ENSSVLG00005024985) #14	ENSSVLG00005024960 ##15	ZCCHC14 (ENSSVLG00005024894) #16	JPH3 (ENSSVLG00005024840) #17	ENSSVLG00005024798	KLHDC4 (ENSSVLG00005024738) #18	SLC7A5 (ENSSVLG00005024701) #19	CA5A (ENSSVLG00005024653) #20	BANP (ENSSVLG00005024587) #21	ZFPM1 (ENSSVLG00005024272) #22	ZC3H18 (ENSSVLG00005024223) #24	IL17C (ENSSVLG00005024189) #25	CYBA (ENSSVLG00005024171) #26	MVD (ENSSVLG00005024123) #27	SNAI3 (ENSSVLG00005024096) #28	RNF166 (ENSSVLG00005024047) #29	CTU2 (ENSSVLG00005024007) #30	CDT1 (ENSSVLG00005022481) #32	APRT (ENSSVLG00005022428) #33	GALNS (ENSSVLG00005022395) #34	TRAPPC2L (ENSSVLG00005022327) #35	PABPN1L (ENSSVLG00005022098) #37	CBFA2T3 (ENSSVLG00005021892)	ACSF3 (ENSSVLG00005021795)	CDH15 (ENSSVLG00005021588)
Hystricomorpha	ANCESTRAL SPECIES	59	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.ab #15	ENSGT00940000154158.k.a.`b #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Hystricomorpha_a	ANCESTRAL SPECIES	64	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.ab #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Hystricomorpha_b	ANCESTRAL SPECIES	82	ENSGT00390000015933	ENSGT00390000006738.a	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.k.a.ab #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.d #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Degu	MODERN SPECIES	256												ENSODEG00000004621	ENSODEG00000004611 #19	CA5A (ENSODEG00000004595) #20	ENSODEG00000004574 #21	ZFPM1 (ENSODEG00000004547) #22	ZC3H18 (ENSODEG00000004401) #24	IL17C (ENSODEG00000004311) #25	CYBA (ENSODEG00000004204) #26	MVD (ENSODEG00000004168) #27	SNAI3 (ENSODEG00000004154) #28	RNF166 (ENSODEG00000004145) #29	CTU2 (ENSODEG00000004093) #30	PIEZO1 (ENSODEG00000005089) #31	CDT1 (ENSODEG00000004905) #32	ENSODEG00000004857 #33	GALNS (ENSODEG00000004721) #34	ENSODEG00000004673 #35	PABPN1L (ENSODEG00000004649) #37	CBFA2T3 (ENSODEG00000004615)	ENSODEG00000004407
Guinea pig	MODERN SPECIES	270																ZFPM1 (ENSCPOG00000024281) #22	ZC3H18 (ENSCPOG00000031675) #24	IL17C (ENSCPOG00000033964) #25	CYBA (ENSCPOG00000001019) #26	MVD (ENSCPOG00000020861) #27	SNAI3 (ENSCPOG00000031579) #28	RNF166 (ENSCPOG00000001798) #29	CTU2 (ENSCPOG00000008782) #30	PIEZO1 (ENSCPOG00000008804) #31	CDT1 (ENSCPOG00000023857) #32	APRT (ENSCPOG00000026373) #33	GALNS (ENSCPOG00000021208) #34	TRAPPC2L (ENSCPOG00000002742) #35	PABPN1L (ENSCPOG00000025951) #37	CBFA2T3 (ENSCPOG00000023105)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	26	C16orf74 (ENSHGLG00000044539)	GINS2 (ENSHGLG00000011513)	GSE1 (ENSHGLG00000014146)	CIBAR2 (ENSHGLG00000019087)	KIAA0513 (ENSHGLG00000044322)	ZDHHC7 (ENSHGLG00000010557)	USP10 (ENSHGLG00000016812)	KLHL36 (ENSHGLG00000016784)	COTL1 (ENSHGLG00000018790)	ENSHGLG00000012079	ENSHGLG00000014744	ENSHGLG00000014295 #19	ENSHGLG00000011507 #20	BANP (ENSHGLG00000009601) #21	ENSHGLG00000038403 #22	ENSHGLG00000040718 #22	ENSHGLG00000013309 #24	IL17C (ENSHGLG00000037937) #25	CYBA (ENSHGLG00000050710) #26	ENSHGLG00000043954 #27	SNAI3 (ENSHGLG00000018681) #28	RNF166 (ENSHGLG00000014545) #29	CTU2 (ENSHGLG00000015988) #30	ENSHGLG00000036225 #31	ENSHGLG00000036618 #33	GALNS (ENSHGLG00000011517) #34	TRAPPC2L (ENSHGLG00000010329) #35	PABPN1L (ENSHGLG00000043697) #37	ENSHGLG00000032090	ENSHGLG00000038565	ENSHGLG00000044301
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000014169	C16orf74 (ENSHGLG00000044539)	GINS2 (ENSHGLG00000011513)	GSE1 (ENSHGLG00000014146)	CIBAR2 (ENSHGLG00000019087)	KIAA0513 (ENSHGLG00000044322)	ZDHHC7 (ENSHGLG00000010557)	USP10 (ENSHGLG00000016812)	KLHL36 (ENSHGLG00000016784)	COTL1 (ENSHGLG00000018790)	ENSHGLG00000012079	ENSHGLG00000014744	ENSHGLG00000014295 #19	ENSHGLG00000011507 #20	BANP (ENSHGLG00000009601) #21	ENSHGLG00000038403 #22	ENSHGLG00000040718 #22	ENSHGLG00000013309 #24	IL17C (ENSHGLG00000037937) #25	CYBA (ENSHGLG00000050710) #26	ENSHGLG00000043954 #27	SNAI3 (ENSHGLG00000018681) #28	RNF166 (ENSHGLG00000014545) #29	CTU2 (ENSHGLG00000015988) #30	ENSHGLG00000036225 #31	ENSHGLG00000036618 #33	GALNS (ENSHGLG00000011517) #34	TRAPPC2L (ENSHGLG00000010329) #35	PABPN1L (ENSHGLG00000043697) #37	ENSHGLG00000032090	ENSHGLG00000038565
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00530000063823.b.a #22
Pika	MODERN SPECIES	3782																ENSOPRG00000010213 #22
Primates	ANCESTRAL SPECIES	21	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Haplorrhini	ANCESTRAL SPECIES	21	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Tarsier	MODERN SPECIES	2499																ENSTSYG00000025886 #22
Simiiformes	ANCESTRAL SPECIES	21	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00910000148492	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Rhinopithecus	ANCESTRAL SPECIES	22	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00910000148492	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325.a #37	ENSGT00950000183176.b.e
Black snub-nosed monkey	MODERN SPECIES	172	ENSRBIG00000022447	FOXF1 (ENSRBIG00000044551) #9	MTHFSD (ENSRBIG00000043280) #10	FOXL1 (ENSRBIG00000017663) #12	ENSRBIG00000035591	C16orf95 (ENSRBIG00000042782) #13	FBXO31 (ENSRBIG00000032616) #14	MAP1LC3B (ENSRBIG00000044552) #15	ZCCHC14 (ENSRBIG00000039663) #16	JPH3 (ENSRBIG00000041867) #17	KLHDC4 (ENSRBIG00000039915) #18	SLC7A5 (ENSRBIG00000032594) #19	CA5A (ENSRBIG00000025810) #20	BANP (ENSRBIG00000034524) #21	ZNF469 (ENSRBIG00000040060)	ENSRBIG00000041824 #22	ZC3H18 (ENSRBIG00000000680) #24	IL17C (ENSRBIG00000033837) #25	CYBA (ENSRBIG00000029680) #26	MVD (ENSRBIG00000034837) #27	SNAI3 (ENSRBIG00000025770) #28	RNF166 (ENSRBIG00000035419) #29	CTU2 (ENSRBIG00000044987) #30	ENSRBIG00000044966	PIEZO1 (ENSRBIG00000044961) #31	CDT1 (ENSRBIG00000044946) #32	APRT (ENSRBIG00000035157) #33	GALNS (ENSRBIG00000036807) #34	ENSRBIG00000041149 ##35	PABPN1L (ENSRBIG00000030740) #37	CBFA2T3 (ENSRBIG00000032274)
Golden snub-nosed monkey	MODERN SPECIES	3015	MTHFSD (ENSRROG00000045411) #10	FOXC2 (ENSRROG00000005453) #11	FOXL1 (ENSRROG00000015087) #12	ENSRROG00000030132	C16orf95 (ENSRROG00000037778) #13	ENSRROG00000036728	FBXO31 (ENSRROG00000028515) #14	ENSRROG00000006795 #15	ZCCHC14 (ENSRROG00000040386) #16	JPH3 (ENSRROG00000033702) #17	KLHDC4 (ENSRROG00000039267) #18	SLC7A5 (ENSRROG00000037840) #19	CA5A (ENSRROG00000044182) #20	BANP (ENSRROG00000004589) #21	ZNF469 (ENSRROG00000024447)	ENSRROG00000045034 #22	ZC3H18 (ENSRROG00000029926) #24	IL17C (ENSRROG00000037384) #25	CYBA (ENSRROG00000041592) #26	MVD (ENSRROG00000034802) #27	SNAI3 (ENSRROG00000032757) #28	RNF166 (ENSRROG00000021426) #29	CTU2 (ENSRROG00000040333) #30	ENSRROG00000042753	PIEZO1 (ENSRROG00000033548) #31	CDT1 (ENSRROG00000037072) #32	APRT (ENSRROG00000031834) #33	GALNS (ENSRROG00000031092) #34	ENSRROG00000043441 ##35	ENSRROG00000032240 #37	CBFA2T3 (ENSRROG00000043959)
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00910000148492	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Vervet Monkey	MODERN SPECIES	24	FOXF1 (ENSCSAG00000003141) #9	MTHFSD (ENSCSAG00000003139) #10	FOXC2 (ENSCSAG00000018476) #11	FOXL1 (ENSCSAG00000018478) #12	ENSCSAG00000003138 #13	FBXO31 (ENSCSAG00000003136) #14	MAP1LC3B (ENSCSAG00000003134) #15	ZCCHC14 (ENSCSAG00000003131) #16	JPH3 (ENSCSAG00000003128) #17	ENSCSAG00000003126	KLHDC4 (ENSCSAG00000003123) #18	SLC7A5 (ENSCSAG00000003120) #19	ENSCSAG00000003118 #20	BANP (ENSCSAG00000003117) #21	ZNF469 (ENSCSAG00000003112)	ZFPM1 (ENSCSAG00000003107) #22	ZC3H18 (ENSCSAG00000003095) #24	IL17C (ENSCSAG00000003062) #25	CYBA (ENSCSAG00000003057) #26	MVD (ENSCSAG00000003054) #27	SNAI3 (ENSCSAG00000003047) #28	RNF166 (ENSCSAG00000003038) #29	CTU2 (ENSCSAG00000003023) #30	PIEZO1 (ENSCSAG00000002988) #31	CDT1 (ENSCSAG00000002900) #32	APRT (ENSCSAG00000002893) #33	GALNS (ENSCSAG00000002889) #34	TRAPPC2L (ENSCSAG00000002885) ##35	PABPN1L (ENSCSAG00000002881) #37	CBFA2T3 (ENSCSAG00000002875)	ACSF3 (ENSCSAG00000002870)
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00910000148492	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Olive baboon	MODERN SPECIES	9	ENSPANG00000010330 #7	IRF8 (ENSPANG00000024770) #8	FOXF1 (ENSPANG00000006104) #9	MTHFSD (ENSPANG00000021729) #10	FOXC2 (ENSPANG00000044176) #11	FOXL1 (ENSPANG00000037966) #12	ENSPANG00000006103 #13	FBXO31 (ENSPANG00000022200) #14	ENSPANG00000025529 #15	ZCCHC14 (ENSPANG00000022199) #16	JPH3 (ENSPANG00000020690) #17	KLHDC4 (ENSPANG00000008631) #18	SLC7A5 (ENSPANG00000009779) #19	CA5A (ENSPANG00000016729) #20	BANP (ENSPANG00000011256) #21	ENSPANG00000005497 #22	ZC3H18 (ENSPANG00000024391) #24	IL17C (ENSPANG00000023121) #25	CYBA (ENSPANG00000032558) #26	MVD (ENSPANG00000022916) #27	SNAI3 (ENSPANG00000000509) #28	RNF166 (ENSPANG00000000510) #29	CTU2 (ENSPANG00000008403) #30	ENSPANG00000021833 #31	CDT1 (ENSPANG00000018841) #32	ENSPANG00000008153 #33	ENSPANG00000050925	GALNS (ENSPANG00000018643) #34	TRAPPC2L (ENSPANG00000010487) ##35	PABPN1L (ENSPANG00000026039) #37	CBFA2T3 (ENSPANG00000018840)
Cercopithecinae_d	ANCESTRAL SPECIES	4	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Sooty mangabey	MODERN SPECIES	96	MTHFSD (ENSCATG00000029682) #10	FOXC2 (ENSCATG00000022325) #11	FOXL1 (ENSCATG00000022314) #12	ENSCATG00000030655	C16orf95 (ENSCATG00000035062) #13	FBXO31 (ENSCATG00000044685) #14	ENSCATG00000034660 #15	ZCCHC14 (ENSCATG00000035317) #16	JPH3 (ENSCATG00000042141) #17	ENSCATG00000030332	KLHDC4 (ENSCATG00000044152) #18	SLC7A5 (ENSCATG00000030290) #19	CA5A (ENSCATG00000032976) #20	BANP (ENSCATG00000031633) #21	ZNF469 (ENSCATG00000029561)	ZFPM1 (ENSCATG00000030036) #22	ZC3H18 (ENSCATG00000044561) #24	IL17C (ENSCATG00000044689) #25	CYBA (ENSCATG00000034724) #26	MVD (ENSCATG00000032028) #27	ENSCATG00000031798	SNAI3 (ENSCATG00000031714) #28	RNF166 (ENSCATG00000015970) #29	CTU2 (ENSCATG00000033042) #30	ENSCATG00000044579	PIEZO1 (ENSCATG00000032078) #31	CDT1 (ENSCATG00000044191) #32	APRT (ENSCATG00000033611) #33	GALNS (ENSCATG00000033097) #34	ENSCATG00000033344 ##35	PABPN1L (ENSCATG00000031060) #37
Drill	MODERN SPECIES	66	MTHFSD (ENSMLEG00000034717) #10	ENSMLEG00000036487 #11	FOXL1 (ENSMLEG00000025792) #12	ENSMLEG00000028841	C16orf95 (ENSMLEG00000033379) #13	FBXO31 (ENSMLEG00000042132) #14	ENSMLEG00000028134 #15	ENSMLEG00000001224	ZCCHC14 (ENSMLEG00000043156) #16	JPH3 (ENSMLEG00000036744) #17	KLHDC4 (ENSMLEG00000042613) #18	SLC7A5 (ENSMLEG00000032494) #19	CA5A (ENSMLEG00000032887) #20	BANP (ENSMLEG00000042886) #21	ZNF469 (ENSMLEG00000038208)	ENSMLEG00000037010 #22	ZC3H18 (ENSMLEG00000042364) #24	IL17C (ENSMLEG00000027565) #25	CYBA (ENSMLEG00000031361) #26	MVD (ENSMLEG00000035354) #27	SNAI3 (ENSMLEG00000033191) #28	RNF166 (ENSMLEG00000042646) #29	CTU2 (ENSMLEG00000038526) #30	PIEZO1 (ENSMLEG00000028012) #31	CDT1 (ENSMLEG00000041793) #32	APRT (ENSMLEG00000043247) #33	GALNS (ENSMLEG00000041599) #34	ENSMLEG00000038930	ENSMLEG00000034475 ##35	PABPN1L (ENSMLEG00000032667) #37	CBFA2T3 (ENSMLEG00000029651)
Macaca	ANCESTRAL SPECIES	8	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00910000148492	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Pig-tailed macaque	MODERN SPECIES	150	MTHFSD (ENSMNEG00000035992) #10	FOXC2 (ENSMNEG00000037781) #11	FOXL1 (ENSMNEG00000038260) #12	ENSMNEG00000035207	ENSMNEG00000001683	C16orf95 (ENSMNEG00000037917) #13	FBXO31 (ENSMNEG00000044346) #14	MAP1LC3B (ENSMNEG00000035048) #15	ZCCHC14 (ENSMNEG00000045229) #16	JPH3 (ENSMNEG00000036414) #17	KLHDC4 (ENSMNEG00000023660) #18	SLC7A5 (ENSMNEG00000043780) #19	CA5A (ENSMNEG00000032047) #20	BANP (ENSMNEG00000032736) #21	ZNF469 (ENSMNEG00000037291)	ZFPM1 (ENSMNEG00000041734) #22	ZC3H18 (ENSMNEG00000033827) #24	IL17C (ENSMNEG00000035604) #25	CYBA (ENSMNEG00000040513) #26	MVD (ENSMNEG00000039710) #27	SNAI3 (ENSMNEG00000045515) #28	RNF166 (ENSMNEG00000044549) #29	CTU2 (ENSMNEG00000040954) #30	PIEZO1 (ENSMNEG00000035161) #31	CDT1 (ENSMNEG00000041221) #32	APRT (ENSMNEG00000044786) #33	GALNS (ENSMNEG00000036303) #34	ENSMNEG00000043036 ##35	PABPN1L (ENSMNEG00000044808) #37	CBFA2T3 (ENSMNEG00000035238)	ACSF3 (ENSMNEG00000029172)
Macaca_a	ANCESTRAL SPECIES	14	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00910000148492	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT01100000263539.b.a.a.a.a.a.b.a.b.b.a	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.a ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Rhesus	MODERN SPECIES	12	ENSMMUG00000063872	ENSMMUG00000017610	FBXO31 (ENSMMUG00000063535) #14	ENSMMUG00000055358	MAP1LC3B (ENSMMUG00000050432) #15	ZCCHC14 (ENSMMUG00000017615) #16	JPH3 (ENSMMUG00000052495) #17	ENSMMUG00000063157	KLHDC4 (ENSMMUG00000022867) #18	SLC7A5 (ENSMMUG00000052851) #19	CA5A (ENSMMUG00000041867) #20	BANP (ENSMMUG00000009473) #21	ENSMMUG00000052116	ENSMMUG00000063167	ZNF469 (ENSMMUG00000046821)	ZFPM1 (ENSMMUG00000053494) #22	ENSMMUG00000052589	ZC3H18 (ENSMMUG00000014323) #24	IL17C (ENSMMUG00000014324) #25	CYBA (ENSMMUG00000053929) #26	MVD (ENSMMUG00000014326) #27	SNAI3 (ENSMMUG00000008716) #28	RNF166 (ENSMMUG00000029068) #29	CTU2 (ENSMMUG00000007251) #30	PIEZO1 (ENSMMUG00000007254) #31	ENSMMUG00000061015	CDT1 (ENSMMUG00000013823) #32	GALNS (ENSMMUG00000012430) #34	TRAPPC2L (ENSMMUG00000053471) ##35	PABPN1L (ENSMMUG00000012438) #37	CBFA2T3 (ENSMMUG00000063909)
Crab-eating macaque	MODERN SPECIES	12	FOXF1 (ENSMFAG00000039933) #9	MTHFSD (ENSMFAG00000044698) #10	ENSMFAG00000063598 #11	ENSMFAG00000000890	ENSMFAG00000044620 #13	ENSMFAG00000038479	FBXO31 (ENSMFAG00000060056) #14	ENSMFAG00000002790 #15	ZCCHC14 (ENSMFAG00000044504) #16	JPH3 (ENSMFAG00000042205) #17	KLHDC4 (ENSMFAG00000000253) #18	SLC7A5 (ENSMFAG00000041887) #19	CA5A (ENSMFAG00000054520) #20	BANP (ENSMFAG00000037628) #21	ENSMFAG00000061038	ENSMFAG00000036335 #22	ZC3H18 (ENSMFAG00000002975) #24	IL17C (ENSMFAG00000036423) #25	ENSMFAG00000048014 #26	MVD (ENSMFAG00000000591) #27	SNAI3 (ENSMFAG00000063008) #28	ENSMFAG00000039545 #29	CDT1 (ENSMFAG00000030941) #32	APRT (ENSMFAG00000003499) #33	GALNS (ENSMFAG00000041824) #34	ENSMFAG00000003395	PABPN1L (ENSMFAG00000002924) #37	CBFA2T3 (ENSMFAG00000003781)	ACSF3 (ENSMFAG00000044180)	CDH15 (ENSMFAG00000024502)	SLC22A31 (ENSMFAG00000031390)
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37
Gibbon	MODERN SPECIES	11	IRF8 (ENSNLEG00000011429) #8	ENSNLEG00000011449 #9	MTHFSD (ENSNLEG00000035790) #10	ENSNLEG00000028606	C16orf95 (ENSNLEG00000011486) #13	ENSNLEG00000030971 #14	MAP1LC3B (ENSNLEG00000011511) #15	ZCCHC14 (ENSNLEG00000011527) #16	ENSNLEG00000033200	ENSNLEG00000011533 #17	KLHDC4 (ENSNLEG00000011540) #18	SLC7A5 (ENSNLEG00000011583) #19	ENSNLEG00000035649 #20	ENSNLEG00000030910 #21	ENSNLEG00000000486	ZFPM1 (ENSNLEG00000000491) #22	ZC3H18 (ENSNLEG00000000496) #24	IL17C (ENSNLEG00000000566) #25	ENSNLEG00000034992 #26	MVD (ENSNLEG00000000590) #27	SNAI3 (ENSNLEG00000000595) #28	RNF166 (ENSNLEG00000000603) #29	ENSNLEG00000000604 #30	PIEZO1 (ENSNLEG00000000624) #31	ENSNLEG00000000652	CDT1 (ENSNLEG00000015601) #32	APRT (ENSNLEG00000015615) #33	GALNS (ENSNLEG00000015633) #34	ENSNLEG00000029183	ENSNLEG00000029365 ##35	ENSNLEG00000015663 #37
Hominidae	ANCESTRAL SPECIES	9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00550000076317	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35
Orangutan	MODERN SPECIES	7	ENSPPYG00000030770	FOXF1 (ENSPPYG00000007623) #9	MTHFSD (ENSPPYG00000007624) #10	FOXC2 (ENSPPYG00000031888) #11	FOXL1 (ENSPPYG00000007626) #12	ENSPPYG00000040095	C16orf95 (ENSPPYG00000035919) #13	FBXO31 (ENSPPYG00000007627) #14	ENSPPYG00000034043 #15	ZCCHC14 (ENSPPYG00000007629) #16	JPH3 (ENSPPYG00000007630) #17	KLHDC4 (ENSPPYG00000007631) #18	SLC7A5 (ENSPPYG00000007633) #19	CA5A (ENSPPYG00000007634) #20	BANP (ENSPPYG00000007742) #21	ZFPM1 (ENSPPYG00000007637) #22	ZC3H18 (ENSPPYG00000007639) #24	IL17C (ENSPPYG00000007640) #25	ENSPPYG00000007641 #26	MVD (ENSPPYG00000007642) #27	SNAI3 (ENSPPYG00000007643) #28	ENSPPYG00000007644	RNF166 (ENSPPYG00000007645) #29	CTU2 (ENSPPYG00000007646) #30	ENSPPYG00000040220 #31	ENSPPYG00000007650	CDT1 (ENSPPYG00000007651) #32	APRT (ENSPPYG00000007652) #33	GALNS (ENSPPYG00000007653) #34	TRAPPC2L (ENSPPYG00000038557) ##35	PABPN1L (ENSPPYG00000007655) #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	19	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00910000147162	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00550000076317	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35
Gorilla	MODERN SPECIES	7	MTHFSD (ENSGGOG00000014557) #10	FOXC2 (ENSGGOG00000014561) #11	FOXL1 (ENSGGOG00000014569) #12	ENSGGOG00000040290	ENSGGOG00000039586	C16orf95 (ENSGGOG00000009383) #13	FBXO31 (ENSGGOG00000009386) #14	ENSGGOG00000037181 #15	ZCCHC14 (ENSGGOG00000026113) #16	JPH3 (ENSGGOG00000003481) #17	ENSGGOG00000024617	KLHDC4 (ENSGGOG00000003483) #18	SLC7A5 (ENSGGOG00000024266) #19	ENSGGOG00000006678 #20	ENSGGOG00000001149 #21	ENSGGOG00000008117 #22	ZC3H18 (ENSGGOG00000012514) #24	IL17C (ENSGGOG00000012533) #25	ENSGGOG00000012534 #26	MVD (ENSGGOG00000012548) #27	SNAI3 (ENSGGOG00000012559) #28	ENSGGOG00000042408	RNF166 (ENSGGOG00000012566) #29	CTU2 (ENSGGOG00000012573) #30	PIEZO1 (ENSGGOG00000012587) #31	CDT1 (ENSGGOG00000012628) #32	APRT (ENSGGOG00000012638) #33	GALNS (ENSGGOG00000012641) #34	ENSGGOG00000036924	ENSGGOG00000012662 ##35	PABPN1L (ENSGGOG00000012670) #37
Homo/Pan group	ANCESTRAL SPECIES	19	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00550000076317	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35
Human	MODERN SPECIES	7	FOXF1 (ENSG00000103241) #9	MTHFSD (ENSG00000103248) #10	FOXC2 (ENSG00000176692) #11	FOXL1 (ENSG00000176678) #12	C16orf95 (ENSG00000260456) #13	ENSG00000131152	FBXO31 (ENSG00000103264) #14	MAP1LC3B (ENSG00000140941) #15	ZCCHC14 (ENSG00000140948) #16	JPH3 (ENSG00000154118) #17	KLHDC4 (ENSG00000104731) #18	SLC7A5 (ENSG00000103257) #19	CA5A (ENSG00000174990) #20	BANP (ENSG00000172530) #21	ZNF469 (ENSG00000225614)	ZFPM1 (ENSG00000179588) #22	ZC3H18 (ENSG00000158545) #24	IL17C (ENSG00000124391) #25	CYBA (ENSG00000051523) #26	MVD (ENSG00000167508) #27	SNAI3 (ENSG00000185669) #28	RNF166 (ENSG00000158717) #29	CTU2 (ENSG00000174177) #30	PIEZO1 (ENSG00000103335) #31	CDT1 (ENSG00000167513) #32	APRT (ENSG00000198931) #33	GALNS (ENSG00000141012) #34	TRAPPC2L (ENSG00000167515) ##35	PABPN1L (ENSG00000205022) #37	CBFA2T3 (ENSG00000129993)	ACSF3 (ENSG00000176715)
Pan	ANCESTRAL SPECIES	19	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00910000146872	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00550000076317	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00410000028565	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00910000147699	ENSGT00510000047505.c.b ##35
Chimpanzee	MODERN SPECIES	7	FOXF1 (ENSPTRG00000008439) #9	MTHFSD (ENSPTRG00000008440) #10	FOXC2 (ENSPTRG00000031133) #11	FOXL1 (ENSPTRG00000008442) #12	ENSPTRG00000043587	C16H16orf95 (ENSPTRG00000008443) #13	FBXO31 (ENSPTRG00000008444) #14	MAP1LC3B (ENSPTRG00000008445) #15	ZCCHC14 (ENSPTRG00000008446) #16	ENSPTRG00000043945	JPH3 (ENSPTRG00000008447) #17	KLHDC4 (ENSPTRG00000008449) #18	SLC7A5 (ENSPTRG00000008450) #19	CA5A (ENSPTRG00000008452) #20	BANP (ENSPTRG00000048876) #21	ZFPM1 (ENSPTRG00000008455) #22	ENSPTRG00000046837	ZC3H18 (ENSPTRG00000008456) #24	IL17C (ENSPTRG00000008457) #25	CYBA (ENSPTRG00000008458) #26	MVD (ENSPTRG00000008459) #27	SNAI3 (ENSPTRG00000008460) #28	ENSPTRG00000048535	RNF166 (ENSPTRG00000008461) #29	CTU2 (ENSPTRG00000008462) #30	PIEZO1 (ENSPTRG00000008463) #31	ENSPTRG00000008464	CDT1 (ENSPTRG00000008465) #32	APRT (ENSPTRG00000008466) #33	GALNS (ENSPTRG00000008467) #34	TRAPPC2L (ENSPTRG00000051923) ##35
Bonobo	MODERN SPECIES	7	MTHFSD (ENSPPAG00000040098) #10	ENSPPAG00000029712	C16orf95 (ENSPPAG00000031275) #13	FBXO31 (ENSPPAG00000043050) #14	ENSPPAG00000030368 #15	ZCCHC14 (ENSPPAG00000032523) #16	JPH3 (ENSPPAG00000041273) #17	KLHDC4 (ENSPPAG00000028684) #18	ENSPPAG00000026859 #19	ENSPPAG00000029889 #20	METTL9 (ENSPPAG00000033160)	IGSF6 (ENSPPAG00000040104)	OTOA (ENSPPAG00000032309)	ENSPPAG00000030703 #21	ZNF469 (ENSPPAG00000043509)	ENSPPAG00000035392 #22	ZC3H18 (ENSPPAG00000037564) #24	IL17C (ENSPPAG00000002106) #25	ENSPPAG00000017054 #26	MVD (ENSPPAG00000025490) #27	SNAI3 (ENSPPAG00000043301) #28	ENSPPAG00000003732	ENSPPAG00000037295 #29	CTU2 (ENSPPAG00000027154) #30	PIEZO1 (ENSPPAG00000033313) #31	ENSPPAG00000021902	CDT1 (ENSPPAG00000035604) #32	APRT (ENSPPAG00000005769) #33	GALNS (ENSPPAG00000026750) #34	ENSPPAG00000028211	ENSPPAG00000030449 ##35
Platyrrhini	ANCESTRAL SPECIES	21	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.a ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Mas night monkey	MODERN SPECIES	517	IRF8 (ENSANAG00000036367) #8	FOXF1 (ENSANAG00000033717) #9	MTHFSD (ENSANAG00000006858) #10	FOXC2 (ENSANAG00000037594) #11	ENSANAG00000009519	ENSANAG00000029721 #13	FBXO31 (ENSANAG00000031968) #14	ENSANAG00000026332 #15	ZCCHC14 (ENSANAG00000035488) #16	JPH3 (ENSANAG00000029008) #17	KLHDC4 (ENSANAG00000026863) #18	SLC7A5 (ENSANAG00000033333) #19	CA5A (ENSANAG00000032664) #20	BANP (ENSANAG00000030439) #21	ZNF469 (ENSANAG00000035596)	ENSANAG00000001376 #22	ZC3H18 (ENSANAG00000021325) #24	IL17C (ENSANAG00000031107) #25	CYBA (ENSANAG00000037939) #26	MVD (ENSANAG00000035160) #27	SNAI3 (ENSANAG00000032748) #28	RNF166 (ENSANAG00000037503) #29	CTU2 (ENSANAG00000037259) #30	PIEZO1 (ENSANAG00000030637) #31	ENSANAG00000028746 #32	ENSANAG00000037195 #33	GALNS (ENSANAG00000028592) #34	ENSANAG00000028335	PABPN1L (ENSANAG00000038178) #37	CBFA2T3 (ENSANAG00000034801)	ACSF3 (ENSANAG00000034101)
Cebidae	ANCESTRAL SPECIES	21	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.a ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Marmoset	MODERN SPECIES	12	MTHFSD (ENSCJAG00000017146) #10	FOXC2 (ENSCJAG00000017143) #11	FOXL1 (ENSCJAG00000040651) #12	ENSCJAG00000042959	C16orf95 (ENSCJAG00000004497) #13	FBXO31 (ENSCJAG00000004482) #14	ENSCJAG00000070480	ENSCJAG00000078991 #15	ZCCHC14 (ENSCJAG00000004460) #16	JPH3 (ENSCJAG00000008801) #17	KLHDC4 (ENSCJAG00000008702) #18	ENSCJAG00000070545	SLC7A5 (ENSCJAG00000008679) #19	ENSCJAG00000078053 #20	BANP (ENSCJAG00000074926) #21	ZFPM1 (ENSCJAG00000012840) #22	ZC3H18 (ENSCJAG00000012844) #24	IL17C (ENSCJAG00000078077) #25	CYBA (ENSCJAG00000051807) #26	MVD (ENSCJAG00000012897) #27	SNAI3 (ENSCJAG00000012922) #28	RNF166 (ENSCJAG00000012927) #29	CTU2 (ENSCJAG00000043426) #30	PIEZO1 (ENSCJAG00000012943) #31	CDT1 (ENSCJAG00000012986) #32	APRT (ENSCJAG00000012990) #33	GALNS (ENSCJAG00000012993) #34	TRAPPC2L (ENSCJAG00000013011) ##35	ENSCJAG00000045284 #37	CBFA2T3 (ENSCJAG00000052863)	CDH15 (ENSCJAG00000010899)
Cebidae_a	ANCESTRAL SPECIES	51	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e.n	ENSGT00940000157000
Capuchin	MODERN SPECIES	159	IRF8 (ENSCCAG00000017098) #8	FOXF1 (ENSCCAG00000023946) #9	MTHFSD (ENSCCAG00000023314) #10	FOXC2 (ENSCCAG00000032599) #11	ENSCCAG00000024367	ENSCCAG00000032392 #13	FBXO31 (ENSCCAG00000033481) #14	ENSCCAG00000022874 #15	ZCCHC14 (ENSCCAG00000024606) #16	JPH3 (ENSCCAG00000019505) #17	KLHDC4 (ENSCCAG00000035306) #18	SLC7A5 (ENSCCAG00000023872) #19	CA5A (ENSCCAG00000034053) #20	BANP (ENSCCAG00000020397) #21	ZNF469 (ENSCCAG00000036599)	ZFPM1 (ENSCCAG00000036250) #22	ZC3H18 (ENSCCAG00000026448) #24	IL17C (ENSCCAG00000032238) #25	MVD (ENSCCAG00000037872) #27	CYBA (ENSCCAG00000021236) #26
Bolivian squirrel monkey	MODERN SPECIES	48	IRF8 (ENSSBOG00000034631) #8	FOXF1 (ENSSBOG00000021248) #9	MTHFSD (ENSSBOG00000033851) #10	ENSSBOG00000035383	ENSSBOG00000002492	FBXO31 (ENSSBOG00000024885) #14	ENSSBOG00000035420 #15	ZCCHC14 (ENSSBOG00000024962) #16	JPH3 (ENSSBOG00000021921) #17	KLHDC4 (ENSSBOG00000020681) #18	ENSSBOG00000013279	SLC7A5 (ENSSBOG00000028258) #19	CA5A (ENSSBOG00000036084) #20	BANP (ENSSBOG00000018903) #21	ZNF469 (ENSSBOG00000022836)	ENSSBOG00000023100 #22	ZC3H18 (ENSSBOG00000023949) #24	IL17C (ENSSBOG00000018593) #25	CYBA (ENSSBOG00000032747) #26	MVD (ENSSBOG00000024849) #27	SNAI3 (ENSSBOG00000026371) #28	ENSSBOG00000020774 #29	CTU2 (ENSSBOG00000022690) #30	PIEZO1 (ENSSBOG00000036054) #31	CDT1 (ENSSBOG00000035956) #32	APRT (ENSSBOG00000019978) #33	GALNS (ENSSBOG00000028431) #34	TRAPPC2L (ENSSBOG00000027294) ##35	PABPN1L (ENSSBOG00000018410) #37	ENSSBOG00000018570
Strepsirrhini	ANCESTRAL SPECIES	17	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.a ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Bushbaby	MODERN SPECIES	300	FOXF1 (ENSOGAG00000011910) #9	MTHFSD (ENSOGAG00000011905) #10	FOXC2 (ENSOGAG00000026902) #11	FOXL1 (ENSOGAG00000011899) #12	ENSOGAG00000031526	FBXO31 (ENSOGAG00000004252) #14	ENSOGAG00000004256 #15	ZCCHC14 (ENSOGAG00000029811) #16	ENSOGAG00000017093	KLHDC4 (ENSOGAG00000013497) #18	SLC7A5 (ENSOGAG00000025992) #19	CA5A (ENSOGAG00000011918) #20	BANP (ENSOGAG00000031291) #21	ZNF469 (ENSOGAG00000032140)	ENSOGAG00000034609	ZFPM1 (ENSOGAG00000028472) #22	ZC3H18 (ENSOGAG00000000414) #24	IL17C (ENSOGAG00000000416) #25	CYBA (ENSOGAG00000000417) #26	MVD (ENSOGAG00000000418) #27	SNAI3 (ENSOGAG00000000419) #28	RNF166 (ENSOGAG00000030194) #29	CTU2 (ENSOGAG00000000420) #30	PIEZO1 (ENSOGAG00000025510) #31	CDT1 (ENSOGAG00000024919) #32	APRT (ENSOGAG00000033873) #33	GALNS (ENSOGAG00000000429) #34	TRAPPC2L (ENSOGAG00000000431) ##35	PABPN1L (ENSOGAG00000000433) #37	CBFA2T3 (ENSOGAG00000009704)	ACSF3 (ENSOGAG00000001315)
Lemuriformes	ANCESTRAL SPECIES	51	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00510000047505.c.a ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Mouse lemur	MODERN SPECIES	12	COX4I1 (ENSMICG00000010800) #7	ENSMICG00000037961 #8	FOXF1 (ENSMICG00000034429) #9	MTHFSD (ENSMICG00000035837) #10	FOXC2 (ENSMICG00000027960) #11	C16orf95 (ENSMICG00000031068) #13	FBXO31 (ENSMICG00000007352) #14	ENSMICG00000042357 #15	ZCCHC14 (ENSMICG00000034441) #16	ENSMICG00000012327	KLHDC4 (ENSMICG00000008652) #18	SLC7A5 (ENSMICG00000004514) #19	CA5A (ENSMICG00000046573) #20	BANP (ENSMICG00000006974) #21	ZNF469 (ENSMICG00000047893)	ZFPM1 (ENSMICG00000032078) #22	ZC3H18 (ENSMICG00000006699) #24	IL17C (ENSMICG00000006713) #25	CYBA (ENSMICG00000043128) #26	MVD (ENSMICG00000006723) #27	SNAI3 (ENSMICG00000048066) #28	RNF166 (ENSMICG00000034727) #29	ENSMICG00000046938	ENSMICG00000036370 #31	PIEZO1 (ENSMICG00000008905) #31	CDT1 (ENSMICG00000046243) #32	APRT (ENSMICG00000042171) #33	GALNS (ENSMICG00000006599) #34	ENSMICG00000047407	ENSMICG00000033395	CBFA2T3 (ENSMICG00000000410)
Lemuriformes_a	ANCESTRAL SPECIES	55	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT01050000246015	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505.c.b ##35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Coquerels sifaka	MODERN SPECIES	714				MTHFSD (ENSPCOG00000026655) #10	FOXC2 (ENSPCOG00000025567) #11	ENSPCOG00000019186 #13	FBXO31 (ENSPCOG00000024590) #14	ENSPCOG00000019510 ##15	ZCCHC14 (ENSPCOG00000003282) #16	JPH3 (ENSPCOG00000013592) #17	KLHDC4 (ENSPCOG00000016838) #18	SLC7A5 (ENSPCOG00000025537) #19	CA5A (ENSPCOG00000018765) #20	BANP (ENSPCOG00000018668) #21	ZNF469 (ENSPCOG00000021371)	ZFPM1 (ENSPCOG00000016313) #22	ZC3H18 (ENSPCOG00000025239) #24	IL17C (ENSPCOG00000027206) #25	CYBA (ENSPCOG00000024265) #26	MVD (ENSPCOG00000016803) #27	SNAI3 (ENSPCOG00000020552) #28	ENSPCOG00000019734 #29	CTU2 (ENSPCOG00000006406) #30	PIEZO1 (ENSPCOG00000019773) #31	CDT1 (ENSPCOG00000019409) #32	APRT (ENSPCOG00000011766) #33	GALNS (ENSPCOG00000017227) #34	TRAPPC2L (ENSPCOG00000017490) ##35	PABPN1L (ENSPCOG00000024077) #37	CBFA2T3 (ENSPCOG00000028480)
Greater bamboo lemur	MODERN SPECIES	175	IRF8 (ENSPSMG00000008092) #8	FOXF1 (ENSPSMG00000008099) #9	MTHFSD (ENSPSMG00000008146) #10	FOXC2 (ENSPSMG00000008184) #11	FOXL1 (ENSPSMG00000008188) #12	FBXO31 (ENSPSMG00000008219) #14	ENSPSMG00000008246 #15	ENSPSMG00000008253	ZCCHC14 (ENSPSMG00000008326) #16	ENSPSMG00000008394	KLHDC4 (ENSPSMG00000008788) #18	SLC7A5 (ENSPSMG00000009148) #19	CA5A (ENSPSMG00000009178) #20	BANP (ENSPSMG00000009267) #21	ZNF469 (ENSPSMG00000009368)	ENSPSMG00000009376 #22	ZC3H18 (ENSPSMG00000009510) #24	IL17C (ENSPSMG00000009542) #25	ENSPSMG00000009551 #26	MVD (ENSPSMG00000009568) #27	SNAI3 (ENSPSMG00000009571) #28	RNF166 (ENSPSMG00000009591) #29	CTU2 (ENSPSMG00000009614) #30	ENSPSMG00000009627 #31	ENSPSMG00000009632 #31	CDT1 (ENSPSMG00000009647) #32	APRT (ENSPSMG00000009665) #33	GALNS (ENSPSMG00000009716) #34	ENSPSMG00000009771 ##35	PABPN1L (ENSPSMG00000009791) #37	CBFA2T3 (ENSPSMG00000009813)
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Suina	ANCESTRAL SPECIES	36	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Chacoan peccary	MODERN SPECIES	18															ZNF469 (ENSCWAG00000018781)	ZFPM1 (ENSCWAG00000018807) #22	ZC3H18 (ENSCWAG00000018955) #24	IL17C (ENSCWAG00000018994) #25	CYBA (ENSCWAG00000019021) #26	MVD (ENSCWAG00000019041) #27	SNAI3 (ENSCWAG00000019091) #28
Pig	MODERN SPECIES	14	IRF8 (ENSSSCG00000034980) #8	FOXF1 (ENSSSCG00000038460) #9	MTHFSD (ENSSSCG00000002660) #10	FOXC2 (ENSSSCG00000029296) #11	FOXL1 (ENSSSCG00000002658) #12	ENSSSCG00000002657 #13	FBXO31 (ENSSSCG00000002654) #14	MAP1LC3B (ENSSSCG00000002655) #15	ZCCHC14 (ENSSSCG00000002656) #16	ENSSSCG00000002653	KLHDC4 (ENSSSCG00000002652) #18	SLC7A5 (ENSSSCG00000032996) #19	CA5A (ENSSSCG00000035629) #20	ENSSSCG00000058086	BANP (ENSSSCG00000020678) #21	ZFPM1 (ENSSSCG00000040875) #22	ZC3H18 (ENSSSCG00000035967) #24	IL17C (ENSSSCG00000056651) #25	CYBA (ENSSSCG00000031493) #26	MVD (ENSSSCG00000034905) #27	SNAI3 (ENSSSCG00000040145) #28	RNF166 (ENSSSCG00000034455) #29	CTU2 (ENSSSCG00000033920) #30	PIEZO1 (ENSSSCG00000035230) #31	CDT1 (ENSSSCG00000002651) #32	APRT (ENSSSCG00000002650) #33	GALNS (ENSSSCG00000002645) #34	TRAPPC2L (ENSSSCG00000002646) #35	PABPN1L (ENSSSCG00000036367) #37	CBFA2T3 (ENSSSCG00000002648)	ACSF3 (ENSSSCG00000023866)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Camelidae	ANCESTRAL SPECIES	82	ENSGT00390000006738.a	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Arabian camel	MODERN SPECIES	13	COX4I1 (ENSCDRG00005010371) #7	IRF8 (ENSCDRG00005010228) #8	FOXF1 (ENSCDRG00005010196) #9	MTHFSD (ENSCDRG00005010013) #10	FOXL1 (ENSCDRG00005009782) #12	ENSCDRG00005009750	FBXO31 (ENSCDRG00005009397) #14	ENSCDRG00005009276 #15	ZCCHC14 (ENSCDRG00005009153) #16	JPH3 (ENSCDRG00005009072) #17	KLHDC4 (ENSCDRG00005008963) #18	ENSCDRG00005008900 #19	CA5A (ENSCDRG00005020666) #20	BANP (ENSCDRG00005020643) #21	ZNF469 (ENSCDRG00005020636)	ZFPM1 (ENSCDRG00005020620) #22	ZC3H18 (ENSCDRG00005020605) #24	IL17C (ENSCDRG00005020593) #25	CYBA (ENSCDRG00005020585) #26	MVD (ENSCDRG00005020571) #27	SNAI3 (ENSCDRG00005020562) #28	RNF166 (ENSCDRG00005020545) #29	CTU2 (ENSCDRG00005020514) #30	ENSCDRG00005020494 #31	CDT1 (ENSCDRG00005020480) #32	APRT (ENSCDRG00005020463) #33	GALNS (ENSCDRG00005020434) #34	TRAPPC2L (ENSCDRG00005020411) #35	PABPN1L (ENSCDRG00005020384) #37	CBFA2T3 (ENSCDRG00005020363)	ACSF3 (ENSCDRG00005020347)
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Cetacea	ANCESTRAL SPECIES	6	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b.f #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b.f #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b.f #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Dolphin	MODERN SPECIES	2182																ENSTTRG00000014484 #22
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b.f #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b.f #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Narwhal	MODERN SPECIES	296	COX4I1 (ENSMMNG00015001973) #7	IRF8 (ENSMMNG00015001938) #8	FOXF1 (ENSMMNG00015001918) #9	ENSMMNG00015001903 #10	ENSMMNG00015001883 #10	FOXC2 (ENSMMNG00015001866) #11	FOXL1 (ENSMMNG00015001855) #12	FBXO31 (ENSMMNG00015001790) #14	ENSMMNG00015001776 #15	ZCCHC14 (ENSMMNG00015001725) #16	JPH3 (ENSMMNG00015001693) #17	KLHDC4 (ENSMMNG00015001620) #18	SLC7A5 (ENSMMNG00015001520) #19	CA5A (ENSMMNG00015001464) #20	BANP (ENSMMNG00015001362) #21	ZFPM1 (ENSMMNG00015001163) #22	ZC3H18 (ENSMMNG00015001109) #24	IL17C (ENSMMNG00015001065) #25	CYBA (ENSMMNG00015001037) #26	MVD (ENSMMNG00015001001) #27	SNAI3 (ENSMMNG00015000980) #28	ENSMMNG00015000928 #29	CTU2 (ENSMMNG00015000879) #30	PIEZO1 (ENSMMNG00015000785) #31	CDT1 (ENSMMNG00015000724) #32	APRT (ENSMMNG00015000690) #33	GALNS (ENSMMNG00015000663) #34	TRAPPC2L (ENSMMNG00015000621) #35	PABPN1L (ENSMMNG00015000557) #37	CBFA2T3 (ENSMMNG00015000500)	ACSF3 (ENSMMNG00015000443)
Beluga whale	MODERN SPECIES	12	COX4I1 (ENSDLEG00000000098) #7	IRF8 (ENSDLEG00000000063) #8	FOXF1 (ENSDLEG00000000049) #9	MTHFSD (ENSDLEG00000003253) #10	FOXC2 (ENSDLEG00000003250) #11	FOXL1 (ENSDLEG00000003242) #12	FBXO31 (ENSDLEG00000003228) #14	ENSDLEG00000003210 #15	ZCCHC14 (ENSDLEG00000003183) #16	JPH3 (ENSDLEG00000003164) #17	KLHDC4 (ENSDLEG00000003152) #18	SLC7A5 (ENSDLEG00000003076) #19	CA5A (ENSDLEG00000003045) #20	BANP (ENSDLEG00000003013) #21	ZNF469 (ENSDLEG00000002998)	ZFPM1 (ENSDLEG00000002967) #22	ZC3H18 (ENSDLEG00000002941) #24	IL17C (ENSDLEG00000002917) #25	CYBA (ENSDLEG00000002909) #26	MVD (ENSDLEG00000002894) #27	SNAI3 (ENSDLEG00000002884) #28	RNF166 (ENSDLEG00000002871) #29	CTU2 (ENSDLEG00000002847) #30	ENSDLEG00000002787 #31	CDT1 (ENSDLEG00000002762) #32	ENSDLEG00000002754 #33	GALNS (ENSDLEG00000002744) #34	TRAPPC2L (ENSDLEG00000002703) #35	PABPN1L (ENSDLEG00000002670) #37	CBFA2T3 (ENSDLEG00000002646)	ACSF3 (ENSDLEG00000002624)
Vaquita	MODERN SPECIES	10	GINS2 (ENSPSNG00000020636)	ENSPSNG00000020667	EMC8 (ENSPSNG00000020702)	COX4I1 (ENSPSNG00000020743) #7	IRF8 (ENSPSNG00000020794) #8	FOXF1 (ENSPSNG00000020873) #9	MTHFSD (ENSPSNG00000020898) #10	FOXC2 (ENSPSNG00000020926) #11	FBXO31 (ENSPSNG00000021103) #14	ZCCHC14 (ENSPSNG00000021201) #16	JPH3 (ENSPSNG00000021253) #17	KLHDC4 (ENSPSNG00000021309) #18	SLC7A5 (ENSPSNG00000021391) #19	CA5A (ENSPSNG00000021457) #20	BANP (ENSPSNG00000021545) #21	ZFPM1 (ENSPSNG00000021672) #22	ZC3H18 (ENSPSNG00000021780) #24	IL17C (ENSPSNG00000006202) #25	CYBA (ENSPSNG00000006234) #26	MVD (ENSPSNG00000006286) #27	ENSPSNG00000006321 #28	ENSPSNG00000006358 #28	ENSPSNG00000006413 #28	RNF166 (ENSPSNG00000006541) #29	CTU2 (ENSPSNG00000006620) #30	PIEZO1 (ENSPSNG00000006734) #31	CDT1 (ENSPSNG00000007139) #32	APRT (ENSPSNG00000007177) #33	GALNS (ENSPSNG00000007211) #34	TRAPPC2L (ENSPSNG00000007277) #35	PABPN1L (ENSPSNG00000007376) #37
Blue whale	MODERN SPECIES	10	COX4I1 (ENSBMSG00010017804) #7	ENSBMSG00010017833 #8	ENSBMSG00010017854 #8	FOXF1 (ENSBMSG00010017875) #9	ENSBMSG00010017893 #10	ENSBMSG00010017911 #10	FOXC2 (ENSBMSG00010017944) #11	ENSBMSG00010017965 #12	FBXO31 (ENSBMSG00010018147) #14	ENSBMSG00010018289 ##15	ZCCHC14 (ENSBMSG00010018331) #16	JPH3 (ENSBMSG00010018368) #17	KLHDC4 (ENSBMSG00010018425) #18	SLC7A5 (ENSBMSG00010018549) #19	BANP (ENSBMSG00010018677) #21	ZFPM1 (ENSBMSG00010019106) #22	ENSBMSG00010019135 #23	ZC3H18 (ENSBMSG00010019187) #24	IL17C (ENSBMSG00010019217) #25	CYBA (ENSBMSG00010019240) #26	MVD (ENSBMSG00010019271) #27	SNAI3 (ENSBMSG00010019290) #28	RNF166 (ENSBMSG00010019316) #29	CTU2 (ENSBMSG00010019409) #30	CDT1 (ENSBMSG00010020082) #32	APRT (ENSBMSG00010020108) #33	GALNS (ENSBMSG00010020134) #34	TRAPPC2L (ENSBMSG00010020167) #35	PABPN1L (ENSBMSG00010020243) #37	CBFA2T3 (ENSBMSG00010020288)	ACSF3 (ENSBMSG00010013451)
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Yarkand deer	MODERN SPECIES	27	ENSCHYG00000002320 #7	IRF8 (ENSCHYG00000002350) #8	FOXF1 (ENSCHYG00000002390) #9	MTHFSD (ENSCHYG00000002403) #10	FOXC2 (ENSCHYG00000002422) #11	FOXL1 (ENSCHYG00000002433) #12	FBXO31 (ENSCHYG00000002502) #14	ENSCHYG00000002530 #15	ZCCHC14 (ENSCHYG00000002557) #16	JPH3 (ENSCHYG00000002603) #17	KLHDC4 (ENSCHYG00000002630) #18	SLC7A5 (ENSCHYG00000002670) #19	CA5A (ENSCHYG00000002697) #20	BANP (ENSCHYG00000002777) #21	ZNF469 (ENSCHYG00000002944)	ZFPM1 (ENSCHYG00000002961) #22	ZC3H18 (ENSCHYG00000003027) #24	CYBA (ENSCHYG00000003064) #26	IL17C (ENSCHYG00000003083) #25	MVD (ENSCHYG00000003094) #27	SNAI3 (ENSCHYG00000003114) #28	RNF166 (ENSCHYG00000003134) #29	CTU2 (ENSCHYG00000003155) #30	PIEZO1 (ENSCHYG00000003236) #31	CDT1 (ENSCHYG00000000044) #32	GALNS (ENSCHYG00000000089) #34	TRAPPC2L (ENSCHYG00000000144) #35	ENSCHYG00000000170 #37	CBFA2T3 (ENSCHYG00000000207)	ACSF3 (ENSCHYG00000000245)	CDH15 (ENSCHYG00000000273)
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Siberian musk deer	MODERN SPECIES	1191	COX4I1 (ENSMMSG00000009407) #7	IRF8 (ENSMMSG00000009447) #8	FOXF1 (ENSMMSG00000009511) #9	MTHFSD (ENSMMSG00000009532) #10	FOXC2 (ENSMMSG00000009543) #11	ENSMMSG00000009558 #13	FBXO31 (ENSMMSG00000009597) #14	ENSMMSG00000009639 ##15	ZCCHC14 (ENSMMSG00000009686) #16	JPH3 (ENSMMSG00000009750) #17	KLHDC4 (ENSMMSG00000009802) #18	SLC7A5 (ENSMMSG00000009999) #19	CA5A (ENSMMSG00000010041) #20	BANP (ENSMMSG00000010083) #21	ENSMMSG00000010165	ZFPM1 (ENSMMSG00000010177) #22	ENSMMSG00000010221 #23	ZC3H18 (ENSMMSG00000010256) #24	IL17C (ENSMMSG00000010295) #25	CYBA (ENSMMSG00000010316) #26	MVD (ENSMMSG00000010345) #27	SNAI3 (ENSMMSG00000010386) #28	RNF166 (ENSMMSG00000010404) #29	CTU2 (ENSMMSG00000004779) #30	ENSMMSG00000004869 #31	ENSMMSG00000004917 #31	CDT1 (ENSMMSG00000004961) #32	APRT (ENSMMSG00000005008) #33	GALNS (ENSMMSG00000005055) #34	TRAPPC2L (ENSMMSG00000005116) #35	ENSMMSG00000005265 #37
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Caprinae	ANCESTRAL SPECIES	4	ENSGT00390000002407.d.w #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00730000111190.i #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Goat	MODERN SPECIES	9	ENSCHIG00000012976 #7	IRF8 (ENSCHIG00000027216) #8	FOXF1 (ENSCHIG00000018868) #9	MTHFSD (ENSCHIG00000010977) #10	FOXC2 (ENSCHIG00000024950) #11	FOXL1 (ENSCHIG00000003058) #12	ENSCHIG00000022152 #13	FBXO31 (ENSCHIG00000012761) #14	ENSCHIG00000026673 #15	ZCCHC14 (ENSCHIG00000016741) #16	JPH3 (ENSCHIG00000019663) #17	KLHDC4 (ENSCHIG00000009862) #18	SLC7A5 (ENSCHIG00000019849) #19	CA5A (ENSCHIG00000006073) #20	BANP (ENSCHIG00000014438) #21	ZFPM1 (ENSCHIG00000010239) #22	ENSCHIG00000019746 #24	ENSCHIG00000026768 #24	IL17C (ENSCHIG00000023815) #25	CYBA (ENSCHIG00000014395) #26	MVD (ENSCHIG00000019348) #27	SNAI3 (ENSCHIG00000018087) #28	RNF166 (ENSCHIG00000026588) #29	CTU2 (ENSCHIG00000014854) #30	PIEZO1 (ENSCHIG00000021797) #31	CDT1 (ENSCHIG00000012478) #32	APRT (ENSCHIG00000018530) #33	GALNS (ENSCHIG00000014398) #34	TRAPPC2L (ENSCHIG00000022896) #35	PABPN1L (ENSCHIG00000013987) #37	CBFA2T3 (ENSCHIG00000024719)
Rambouillet Sheep	MODERN SPECIES	5	EMC8 (ENSOARG00020009578)	COX4I1 (ENSOARG00020009649) #7	IRF8 (ENSOARG00020009703) #8	FOXF1 (ENSOARG00020009818) #9	ENSOARG00020009849 #10	FOXC2 (ENSOARG00020010027) #11	FOXL1 (ENSOARG00020010056) #12	ENSOARG00020010085 #13	MAP1LC3B (ENSOARG00020010316) #15	ZCCHC14 (ENSOARG00020010371) #16	JPH3 (ENSOARG00020010721) #17	KLHDC4 (ENSOARG00020010847) #18	SLC7A5 (ENSOARG00020011537) #19	CA5A (ENSOARG00020011718) #20	BANP (ENSOARG00020011813) #21	ZFPM1 (ENSOARG00020012306) #22	ZC3H18 (ENSOARG00020012411) #24	IL17C (ENSOARG00020012956) #25	CYBA (ENSOARG00020013046) #26	MVD (ENSOARG00020013121) #27	SNAI3 (ENSOARG00020013184) #28	RNF166 (ENSOARG00020013239) #29	CTU2 (ENSOARG00020013427) #30	PIEZO1 (ENSOARG00020013792) #31	APRT (ENSOARG00020014302) #33	GALNS (ENSOARG00020014352) #34	TRAPPC2L (ENSOARG00020014414) #35	PABPN1L (ENSOARG00020014567) #37	CBFA2T3 (ENSOARG00020014844)	ACSF3 (ENSOARG00020014939)	CDH15 (ENSOARG00020015069)
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
American bison	MODERN SPECIES	3111															BANP (ENSBBBG00000015497) #21	ENSBBBG00000015589 #22	ENSBBBG00000003895 #23	ENSBBBG00000003897 #24	IL17C (ENSBBBG00000003473) #25	CYBA (ENSBBBG00000003459) #26	MVD (ENSBBBG00000003446) #27	SNAI3 (ENSBBBG00000003436) #28	RNF166 (ENSBBBG00000015638) #29	CTU2 (ENSBBBG00000015652) #30	ENSBBBG00000003908 #31	CDT1 (ENSBBBG00000015673) #32	APRT (ENSBBBG00000015695) #33	GALNS (ENSBBBG00000003922) #34	TRAPPC2L (ENSBBBG00000015729) #35	PABPN1L (ENSBBBG00000015750) #37	CBFA2T3 (ENSBBBG00000015766)
Bos	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Bos_b	ANCESTRAL SPECIES		ENSGT00390000002407.d.w #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Hybrid Bos Indicus	MODERN SPECIES	9	COX4I1 (ENSBIXG00005000673) #7	IRF8 (ENSBIXG00005000680) #8	FOXF1 (ENSBIXG00005009962) #9	MTHFSD (ENSBIXG00005000729) #10	FOXC2 (ENSBIXG00005009988) #11	FOXL1 (ENSBIXG00005009998) #12	FBXO31 (ENSBIXG00005010145) #14	ENSBIXG00005010161 #15	ZCCHC14 (ENSBIXG00005005695) #16	JPH3 (ENSBIXG00005010214) #17	KLHDC4 (ENSBIXG00005010241) #18	SLC7A5 (ENSBIXG00005010266) #19	CA5A (ENSBIXG00005000833) #20	BANP (ENSBIXG00005010464) #21	ZNF469 (ENSBIXG00005010535)	ZFPM1 (ENSBIXG00005010566) #22	ENSBIXG00005000719 #23	IL17C (ENSBIXG00005010593) #25	CYBA (ENSBIXG00005010609) #26	ZC3H18 (ENSBIXG00005010680) #24	MVD (ENSBIXG00005010706) #27	SNAI3 (ENSBIXG00005010723) #28	RNF166 (ENSBIXG00005000607) #29	CTU2 (ENSBIXG00005010824) #30	PIEZO1 (ENSBIXG00005000994) #31	CDT1 (ENSBIXG00005006205) #32	GALNS (ENSBIXG00005011178) #34	TRAPPC2L (ENSBIXG00005011227) #35	ENSBIXG00005001072 #37	CBFA2T3 (ENSBIXG00005001081)	ACSF3 (ENSBIXG00005011368)
Cow	MODERN SPECIES	9	EMC8 (ENSBTAG00000016075)	COX4I1 (ENSBTAG00000016079) #7	IRF8 (ENSBTAG00000017824) #8	FOXF1 (ENSBTAG00000000009) #9	MTHFSD (ENSBTAG00000012446) #10	FOXC2 (ENSBTAG00000012465) #11	FOXL1 (ENSBTAG00000040605) #12	FBXO31 (ENSBTAG00000002226) #14	MAP1LC3B (ENSBTAG00000011632) #15	ZCCHC14 (ENSBTAG00000014267) #16	JPH3 (ENSBTAG00000006899) #17	KLHDC4 (ENSBTAG00000006905) #18	SLC7A5 (ENSBTAG00000006731) #19	CA5A (ENSBTAG00000010151) #20	BANP (ENSBTAG00000023745) #21	ZFPM1 (ENSBTAG00000015766) #22	ENSBTAG00000018507 #23	ZC3H18 (ENSBTAG00000019520) #24	CYBA (ENSBTAG00000051907) #26	MVD (ENSBTAG00000012059) #27	SNAI3 (ENSBTAG00000017528) #28	CTU2 (ENSBTAG00000020943) #30	RNF166 (ENSBTAG00000020942) #29	PIEZO1 (ENSBTAG00000020944) #31	CDT1 (ENSBTAG00000000638) #32	APRT (ENSBTAG00000000639) #33	GALNS (ENSBTAG00000004568) #34	TRAPPC2L (ENSBTAG00000019184) #35	ENSBTAG00000023752 #37	CBFA2T3 (ENSBTAG00000010927)	ACSF3 (ENSBTAG00000015968)
Bos_a	ANCESTRAL SPECIES	22	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Wild yak	MODERN SPECIES	488	ENSBMUG00000013968 #8	ENSBMUG00000013948 #8	MTHFSD (ENSBMUG00000013935) #10	ENSBMUG00000013915 #11	FBXO31 (ENSBMUG00000013869) #14	ENSBMUG00000013858 #15	ZCCHC14 (ENSBMUG00000013842) #16	ENSBMUG00000013822	ENSBMUG00000013818 #17	ENSBMUG00000013815 #17	KLHDC4 (ENSBMUG00000013781) #18	SLC7A5 (ENSBMUG00000013728) #19	CA5A (ENSBMUG00000013703) #20	BANP (ENSBMUG00000013644) #21	ZNF469 (ENSBMUG00000013613)	ENSBMUG00000013581 #22	ENSBMUG00000013540 #23	ZC3H18 (ENSBMUG00000013519) #24	IL17C (ENSBMUG00000013455) #25	CYBA (ENSBMUG00000013440) #26	MVD (ENSBMUG00000013426) #27	SNAI3 (ENSBMUG00000013406) #28	RNF166 (ENSBMUG00000013384) #29	CTU2 (ENSBMUG00000013372) #30	ENSBMUG00000013338 #31	ENSBMUG00000013286 #31	CDT1 (ENSBMUG00000013216) #32	ENSBMUG00000013182 #33	GALNS (ENSBMUG00000013165) #34	TRAPPC2L (ENSBMUG00000013133) #35	PABPN1L (ENSBMUG00000013084) #37
Domestic yak	MODERN SPECIES	12	IRF8 (ENSBGRG00000013321) #8	FOXF1 (ENSBGRG00000013269) #9	MTHFSD (ENSBGRG00000013171) #10	FOXC2 (ENSBGRG00000013151) #11	ENSBGRG00000013135 #12	ENSBGRG00000013092 #13	FBXO31 (ENSBGRG00000012951) #14	ENSBGRG00000012865 #15	ZCCHC14 (ENSBGRG00000012530) #16	JPH3 (ENSBGRG00000012488) #17	KLHDC4 (ENSBGRG00000012190) #18	SLC7A5 (ENSBGRG00000012015) #19	CA5A (ENSBGRG00000011715) #20	ENSBGRG00000011656	BANP (ENSBGRG00000011338) #21	ENSBGRG00000026914 #22	ENSBGRG00000026913 #23	ZC3H18 (ENSBGRG00000026911) #24	IL17C (ENSBGRG00000026910) #25	CYBA (ENSBGRG00000026909) #26	MVD (ENSBGRG00000026907) #27	SNAI3 (ENSBGRG00000026905) #28	ENSBGRG00000026904 #29	CTU2 (ENSBGRG00000026899) #30	PIEZO1 (ENSBGRG00000026892) #31	CDT1 (ENSBGRG00000026890) #32	APRT (ENSBGRG00000026889) #33	GALNS (ENSBGRG00000026887) #34	ENSBGRG00000026885	TRAPPC2L (ENSBGRG00000026882) #35	ENSBGRG00000026880 #37
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.l.c.b ##15	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00940000154158.l.c.a ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Mustelinae	ANCESTRAL SPECIES	6	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.l.c.b ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00940000169624	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Ferret	MODERN SPECIES	203	ENSMPUG00000008598 #13	FBXO31 (ENSMPUG00000008552) #14	ENSMPUG00000008529 ##15	ZCCHC14 (ENSMPUG00000008465) #16	JPH3 (ENSMPUG00000008457) #17	ENSMPUG00000008453	KLHDC4 (ENSMPUG00000008444) #18	SLC7A5 (ENSMPUG00000008406) #19	ENSMPUG00000008402	CA5A (ENSMPUG00000008250) #20	BANP (ENSMPUG00000008244) #21	ENSMPUG00000008236	ENSMPUG00000008232	ENSMPUG00000020008	ENSMPUG00000008229	ENSMPUG00000008220 #22	ENSMPUG00000008212	ZC3H18 (ENSMPUG00000008200) #24	IL17C (ENSMPUG00000008198) #25	CYBA (ENSMPUG00000008126) #26	MVD (ENSMPUG00000008113) #27	SNAI3 (ENSMPUG00000008104) #28	RNF166 (ENSMPUG00000008078) #29	CTU2 (ENSMPUG00000008062) #30	ENSMPUG00000008037	PIEZO1 (ENSMPUG00000007819) #31	ENSMPUG00000007812 #32	GALNS (ENSMPUG00000007673) #34	TRAPPC2L (ENSMPUG00000007622) #35	CBFA2T3 (ENSMPUG00000007614)	ACSF3 (ENSMPUG00000007610)
American mink	MODERN SPECIES	98	FOXF1 (ENSNVIG00000007927) #9	MTHFSD (ENSNVIG00000007938) #10	FOXC2 (ENSNVIG00000007959) #11	FOXL1 (ENSNVIG00000007968) #12	FBXO31 (ENSNVIG00000008017) #14	ENSNVIG00000008027 ##15	ZCCHC14 (ENSNVIG00000008033) #16	JPH3 (ENSNVIG00000008082) #17	KLHDC4 (ENSNVIG00000008118) #18	ENSNVIG00000008218 #19	CA5A (ENSNVIG00000008240) #20	BANP (ENSNVIG00000008277) #21	ENSNVIG00000008515	ENSNVIG00000008518	ENSNVIG00000008526	ENSNVIG00000008543 #22	ENSNVIG00000008579	ZC3H18 (ENSNVIG00000008594) #24	IL17C (ENSNVIG00000008665) #25	CYBA (ENSNVIG00000008678) #26	MVD (ENSNVIG00000008732) #27	SNAI3 (ENSNVIG00000008803) #28	RNF166 (ENSNVIG00000008821) #29	CTU2 (ENSNVIG00000008858) #30	PIEZO1 (ENSNVIG00000008943) #31	CDT1 (ENSNVIG00000009908) #32	APRT (ENSNVIG00000009917) #33	GALNS (ENSNVIG00000009923) #34	TRAPPC2L (ENSNVIG00000009962) #35	ENSNVIG00000009974 #37	CBFA2T3 (ENSNVIG00000010003)
Ursidae	ANCESTRAL SPECIES	8	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT01030000240269
Giant Panda	MODERN SPECIES	3	FOXF1 (ENSAMEG00000018266) #9	MTHFSD (ENSAMEG00000018265) #10	FOXC2 (ENSAMEG00000026760) #11	FOXL1 (ENSAMEG00000019188) #12	ENSAMEG00000018261 #13	FBXO31 (ENSAMEG00000018256) #14	ENSAMEG00000018254 ##15	ZCCHC14 (ENSAMEG00000018253) #16	JPH3 (ENSAMEG00000018252) #17	ENSAMEG00000018231 #18	ENSAMEG00000018203 #19	ENSAMEG00000030494 #19	CA5A (ENSAMEG00000018202) #20	BANP (ENSAMEG00000018194) #21	ZNF469 (ENSAMEG00000030238)	ZFPM1 (ENSAMEG00000018149) #22	ZC3H18 (ENSAMEG00000018179) #24	IL17C (ENSAMEG00000018178) #25	CYBA (ENSAMEG00000018174) #26	MVD (ENSAMEG00000018166) #27	SNAI3 (ENSAMEG00000027774) #28	ENSAMEG00000023865 #29	CTU2 (ENSAMEG00000018152) #30	ENSAMEG00000000371 #32	GALNS (ENSAMEG00000000312) #34	TRAPPC2L (ENSAMEG00000000296) #35	ENSAMEG00000029411 #37	CBFA2T3 (ENSAMEG00000000272)	ENSAMEG00000025457	ACSF3 (ENSAMEG00000003721)	ANKRD11 (ENSAMEG00000001060)
Canidae	ANCESTRAL SPECIES	11	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Canis_lupus	ANCESTRAL SPECIES	5	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00950000183176.b.e	ENSGT00940000157000	ENSGT00940000160118
Dog	MODERN SPECIES	33	IRF8 (ENSCAFG00845004258) #8	FOXF1 (ENSCAFG00845004240) #9	ENSCAFG00845004233 #10	ENSCAFG00845004229 #10	FOXC2 (ENSCAFG00845004221) #11	FOXL1 (ENSCAFG00845004217) #12	ENSCAFG00845004168 #14	MAP1LC3B (ENSCAFG00845004027) ##15	ZCCHC14 (ENSCAFG00845003938) #16	JPH3 (ENSCAFG00845003896) #17	KLHDC4 (ENSCAFG00845003850) #18	SLC7A5 (ENSCAFG00845003789) #19	CA5A (ENSCAFG00845003758) #20	BANP (ENSCAFG00845003720) #21	ZNF469 (ENSCAFG00845003692)	ZFPM1 (ENSCAFG00845003652) #22	ZC3H18 (ENSCAFG00845003583) #24	IL17C (ENSCAFG00845003539) #25	CYBA (ENSCAFG00845003520) #26	MVD (ENSCAFG00845003495) #27	SNAI3 (ENSCAFG00845003473) #28	RNF166 (ENSCAFG00845003452) #29	CTU2 (ENSCAFG00845003409) #30	PIEZO1 (ENSCAFG00845003243) #31	CDT1 (ENSCAFG00845003137) #32	APRT (ENSCAFG00845003116) #33	GALNS (ENSCAFG00845003078) #34	TRAPPC2L (ENSCAFG00845003021) #35	CBFA2T3 (ENSCAFG00845002914)	ACSF3 (ENSCAFG00845002712)	CDH15 (ENSCAFG00845002672)
Dingo	MODERN SPECIES	373	IRF8 (ENSCAFG00020004206) #8	FOXF1 (ENSCAFG00020004287) #9	ENSCAFG00020004291 #10	ENSCAFG00020004294 #10	FOXC2 (ENSCAFG00020004304) #11	FOXL1 (ENSCAFG00020004312) #12	ENSCAFG00020004338 #13	FBXO31 (ENSCAFG00020004345) #14	ENSCAFG00020004363 #15	ZCCHC14 (ENSCAFG00020004411) #16	JPH3 (ENSCAFG00020004461) #17	KLHDC4 (ENSCAFG00020004485) #18	SLC7A5 (ENSCAFG00020004501) #19	CA5A (ENSCAFG00020004529) #20	BANP (ENSCAFG00020004582) #21	ZFPM1 (ENSCAFG00020004606) #22	ZC3H18 (ENSCAFG00020004617) #24	IL17C (ENSCAFG00020004701) #25	CYBA (ENSCAFG00020004707) #26	MVD (ENSCAFG00020004711) #27	SNAI3 (ENSCAFG00020004719) #28	RNF166 (ENSCAFG00020004724) #29	CTU2 (ENSCAFG00020004731) #30	CDT1 (ENSCAFG00020004973) #32	APRT (ENSCAFG00020004978) #33	GALNS (ENSCAFG00020004991) #34	TRAPPC2L (ENSCAFG00020005001) #35	CBFA2T3 (ENSCAFG00020005003)	ACSF3 (ENSCAFG00020005020)	CDH15 (ENSCAFG00020005028)	ENSCAFG00020005049
Red fox	MODERN SPECIES	51	IRF8 (ENSVVUG00000000647) #8	FOXF1 (ENSVVUG00000000664) #9	ENSVVUG00000000674 #10	ENSVVUG00000000715 #11	FOXL1 (ENSVVUG00000000732) #12	CUNH16orf95 (ENSVVUG00000000786) #13	FBXO31 (ENSVVUG00000000808) #14	ENSVVUG00000000840 #15	ZCCHC14 (ENSVVUG00000000929) #16	JPH3 (ENSVVUG00000000956) #17	KLHDC4 (ENSVVUG00000000963) #18	SLC7A5 (ENSVVUG00000001118) #19	CA5A (ENSVVUG00000003089) #20	ENSVVUG00000003099 #21	ZNF469 (ENSVVUG00000003140)	ENSVVUG00000003145 #22	ZC3H18 (ENSVVUG00000003166) #24	IL17C (ENSVVUG00000003193) #25	CYBA (ENSVVUG00000003220) #26	MVD (ENSVVUG00000003226) #27	SNAI3 (ENSVVUG00000003233) #28	ENSVVUG00000003239 #29	CTU2 (ENSVVUG00000003254) #30	PIEZO1 (ENSVVUG00000003475) #31	CDT1 (ENSVVUG00000003504) #32	APRT (ENSVVUG00000003521) #33	GALNS (ENSVVUG00000003542) #34	TRAPPC2L (ENSVVUG00000003588) #35	ENSVVUG00000003659 #37	CBFA2T3 (ENSVVUG00000003674)	ACSF3 (ENSVVUG00000003699)
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.l.c.b ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Cat	MODERN SPECIES	246	FOXF1 (ENSFCAG00000030557) #9	MTHFSD (ENSFCAG00000023656) #10	FOXC2 (ENSFCAG00000045920) #11	FOXL1 (ENSFCAG00000032503) #12	ENSFCAG00000030080 #13	FBXO31 (ENSFCAG00000045924) #14	ENSFCAG00000036874 ##15	ZCCHC14 (ENSFCAG00000031468) #16	ENSFCAG00000039722	JPH3 (ENSFCAG00000008361) #17	KLHDC4 (ENSFCAG00000030498) #18	SLC7A5 (ENSFCAG00000012040) #19	CA5A (ENSFCAG00000041876) #20	BANP (ENSFCAG00000012044) #21	ZNF469 (ENSFCAG00000027577)	ZFPM1 (ENSFCAG00000041829) #22	ZC3H18 (ENSFCAG00000025261) #24	ENSFCAG00000043160 #25	ENSFCAG00000038194 #25	CYBA (ENSFCAG00000006655) #26	MVD (ENSFCAG00000006656) #27	SNAI3 (ENSFCAG00000043885) #28	CTU2 (ENSFCAG00000005923) #30	RNF166 (ENSFCAG00000008487) #29	ENSFCAG00000051259 #31	CDT1 (ENSFCAG00000013014) #32	APRT (ENSFCAG00000039632) #33	GALNS (ENSFCAG00000013017) #34	TRAPPC2L (ENSFCAG00000037670) #35	PABPN1L (ENSFCAG00000010465) #37	CBFA2T3 (ENSFCAG00000014971)
Panthera	ANCESTRAL SPECIES	10	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.l.c.b ##15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Panthera_a	ANCESTRAL SPECIES	8	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000001368 #14	ENSGT00940000154158.l.c.b ##15	ENSGT01050000246015	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
leopard	MODERN SPECIES	60	ENSPPRG00000024103 #7	IRF8 (ENSPPRG00000023576) #8	FOXF1 (ENSPPRG00000023418) #9	MTHFSD (ENSPPRG00000023220) #10	FOXC2 (ENSPPRG00000023064) #11	FBXO31 (ENSPPRG00000022691) #14	ENSPPRG00000000496 ##15	ENSPPRG00000000504	ZCCHC14 (ENSPPRG00000000792) #16	JPH3 (ENSPPRG00000001118) #17	KLHDC4 (ENSPPRG00000002320) #18	ENSPPRG00000002384	SLC7A5 (ENSPPRG00000002690) #19	CA5A (ENSPPRG00000002749) #20	BANP (ENSPPRG00000004221) #21	ENSPPRG00000005543 #22	ENSPPRG00000007243	IL17C (ENSPPRG00000007706) #25	CYBA (ENSPPRG00000008183) #26	MVD (ENSPPRG00000008426) #27	SNAI3 (ENSPPRG00000008511) #28	RNF166 (ENSPPRG00000008966) #29	CTU2 (ENSPPRG00000009232) #30	ENSPPRG00000009590 #31	CDT1 (ENSPPRG00000010026) #32	APRT (ENSPPRG00000010226) #33	GALNS (ENSPPRG00000010540) #34	TRAPPC2L (ENSPPRG00000013246) #35	PABPN1L (ENSPPRG00000015106) #37	CBFA2T3 (ENSPPRG00000024504)	ACSF3 (ENSPPRG00000023828)
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Equus	ANCESTRAL SPECIES	20	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Horse	MODERN SPECIES	22	IRF8 (ENSECAG00000015449) #8	FOXF1 (ENSECAG00000020094) #9	MTHFSD (ENSECAG00000020910) #10	FOXC2 (ENSECAG00000000843) #11	FOXL1 (ENSECAG00000000875) #12	C16orf95 (ENSECAG00000001891) #13	FBXO31 (ENSECAG00000001926) #14	ENSECAG00000009892 ##15	ZCCHC14 (ENSECAG00000013066) #16	JPH3 (ENSECAG00000018366) #17	KLHDC4 (ENSECAG00000019667) #18	SLC7A5 (ENSECAG00000009215) #19	CA5A (ENSECAG00000023701) #20	BANP (ENSECAG00000000420) #21	ZNF469 (ENSECAG00000039591)	ZFPM1 (ENSECAG00000028501) #22	ENSECAG00000010806 #23	ZC3H18 (ENSECAG00000011599) #24	IL17C (ENSECAG00000041547) #25	CYBA (ENSECAG00000010965) #26	MVD (ENSECAG00000011206) #27	SNAI3 (ENSECAG00000012131) #28	CTU2 (ENSECAG00000016209) #30	RNF166 (ENSECAG00000012880) #29	PIEZO1 (ENSECAG00000020292) #31	CDT1 (ENSECAG00000005547) #32	APRT (ENSECAG00000026808) #33	GALNS (ENSECAG00000008732) #34	ENSECAG00000053714	PABPN1L (ENSECAG00000000378) #37	CBFA2T3 (ENSECAG00000003668)
Donkey	MODERN SPECIES	20	IRF8 (ENSEASG00005013834) #8	FOXF1 (ENSEASG00005013836) #9	MTHFSD (ENSEASG00005013838) #10	ENSEASG00005029648 #11	FOXL1 (ENSEASG00005036622) #12	ENSEASG00005013844 #13	FBXO31 (ENSEASG00005013846) #14	ENSEASG00005028539 #15	ZCCHC14 (ENSEASG00005013865) #16	JPH3 (ENSEASG00005000107) #17	KLHDC4 (ENSEASG00005000130) #18	SLC7A5 (ENSEASG00005000143) #19	CA5A (ENSEASG00005000159) #20	BANP (ENSEASG00005000313) #21	ZNF469 (ENSEASG00005024023)	ZFPM1 (ENSEASG00005032047) #22	ENSEASG00005000403 #23	ZC3H18 (ENSEASG00005000446) #24	IL17C (ENSEASG00005026160) #25	CYBA (ENSEASG00005025697) #26	MVD (ENSEASG00005000611) #27	SNAI3 (ENSEASG00005000614) #28	RNF166 (ENSEASG00005000616) #29	CTU2 (ENSEASG00005000626) #30	ENSEASG00005029444 #31	ENSEASG00005038543	CDT1 (ENSEASG00005000688) #32	ENSEASG00005032731 #33	GALNS (ENSEASG00005000770) #34	TRAPPC2L (ENSEASG00005000775) #35	PABPN1L (ENSEASG00005000777) #37
Chiroptera	ANCESTRAL SPECIES	21	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Microchiroptera	ANCESTRAL SPECIES	12	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Greater horseshoe bat	MODERN SPECIES	6	MTHFSD (ENSRFEG00010012359) #10	ENSRFEG00010012380 #11	ENSRFEG00010012391 #12	ENSRFEG00010012410	ENSRFEG00010012443 #11	ENSRFEG00010012457 #12	ENSRFEG00010012472 #13	FBXO31 (ENSRFEG00010012558) #14	ENSRFEG00010012638 #15	ZCCHC14 (ENSRFEG00010012692) #16	JPH3 (ENSRFEG00010012741) #17	KLHDC4 (ENSRFEG00010012796) #18	SLC7A5 (ENSRFEG00010013067) #19	CA5A (ENSRFEG00010013141) #20	BANP (ENSRFEG00010013229) #21	ZFPM1 (ENSRFEG00010014593) #22	ENSRFEG00010014665 #23	ZC3H18 (ENSRFEG00010014910) #24	IL17C (ENSRFEG00010015002) #25	CYBA (ENSRFEG00010015058) #26	MVD (ENSRFEG00010015133) #27	SNAI3 (ENSRFEG00010015196) #28	RNF166 (ENSRFEG00010015249) #29	CTU2 (ENSRFEG00010015429) #30	ENSRFEG00010015452 #31	CDT1 (ENSRFEG00010015959) #32	APRT (ENSRFEG00010016234) #33	GALNS (ENSRFEG00010016413) #34	TRAPPC2L (ENSRFEG00010016434) #35	PABPN1L (ENSRFEG00010016538) #37	CBFA2T3 (ENSRFEG00010016729)
Microbat	MODERN SPECIES	1135					ENSMLUG00000015578 #13	ENSMLUG00000015584 #14	ENSMLUG00000015596 #15	ZCCHC14 (ENSMLUG00000015605) #16	JPH3 (ENSMLUG00000007067) #17	KLHDC4 (ENSMLUG00000008243) #18	SLC7A5 (ENSMLUG00000013355) #19	CA5A (ENSMLUG00000013361) #20	BANP (ENSMLUG00000016116) #21	ENSMLUG00000028033	ZNF469 (ENSMLUG00000028788)	ENSMLUG00000029422 #22	ENSMLUG00000008818 #24	IL17C (ENSMLUG00000008861) #25	CYBA (ENSMLUG00000008863) #26	MVD (ENSMLUG00000008875) #27	SNAI3 (ENSMLUG00000008899) #28	RNF166 (ENSMLUG00000008936) #29	CTU2 (ENSMLUG00000008946) #30	PIEZO1 (ENSMLUG00000008989) #31	CDT1 (ENSMLUG00000003204) #32	APRT (ENSMLUG00000003209) #33	GALNS (ENSMLUG00000003217) #34	ENSMLUG00000003224 #35	ENSMLUG00000003228 #37	CBFA2T3 (ENSMLUG00000003233)	ACSF3 (ENSMLUG00000003035)
Megabat	MODERN SPECIES	5953																ZFPM1 (ENSPVAG00000005587) #22
Atlantogenata	ANCESTRAL SPECIES	52	ENSGT00390000006738.a	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00390000001368 #14	ENSGT00940000154158.k.a #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Afrotheria	ANCESTRAL SPECIES	50	ENSGT00390000006738.a	ENSGT00390000002407.d #7	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00390000001368 #14	ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Afrotheria_a	ANCESTRAL SPECIES	108								ENSGT00940000154158.l ##15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Elephant	MODERN SPECIES	458	COX4I1 (ENSLAFG00000014002) #7	IRF8 (ENSLAFG00000010973) #8	FOXF1 (ENSLAFG00000002036) #9	MTHFSD (ENSLAFG00000002037) #10	FOXC2 (ENSLAFG00000012537) #11	ENSLAFG00000013834	FBXO31 (ENSLAFG00000013841) #14	ENSLAFG00000023364 ##15	ZCCHC14 (ENSLAFG00000013845) #16	JPH3 (ENSLAFG00000013042) #17	KLHDC4 (ENSLAFG00000003675) #18	SLC7A5 (ENSLAFG00000009143) #19	CA5A (ENSLAFG00000008323) #20	BANP (ENSLAFG00000005122) #21	ENSLAFG00000030575	ZFPM1 (ENSLAFG00000013561) #22	ZC3H18 (ENSLAFG00000015674) #24	CYBA (ENSLAFG00000005109) #26	MVD (ENSLAFG00000007196) #27	SNAI3 (ENSLAFG00000005117) #28	RNF166 (ENSLAFG00000005119) #29	CTU2 (ENSLAFG00000005123) #30	PIEZO1 (ENSLAFG00000005128) #31	CDT1 (ENSLAFG00000004104) #32	APRT (ENSLAFG00000004108) #33	GALNS (ENSLAFG00000018664) #34	TRAPPC2L (ENSLAFG00000018665) #35	ENSLAFG00000025902 #37	CBFA2T3 (ENSLAFG00000018668)	ACSF3 (ENSLAFG00000013585)	CDH15 (ENSLAFG00000005917)
Hyrax	MODERN SPECIES	6007																ZFPM1 (ENSPCAG00000014128) #22
Xenarthra	ANCESTRAL SPECIES	1362																ENSGT00530000063823.b.a #22	ENSGT00730000111190 #24	ENSGT00390000015359 #27
Armadillo	MODERN SPECIES	804																ENSDNOG00000040837 #22	ENSDNOG00000000234 #24	MVD (ENSDNOG00000033127) #27
Marsupialia	ANCESTRAL SPECIES	17	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Marsupialia_b	ANCESTRAL SPECIES	19	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Diprotodontia	ANCESTRAL SPECIES	13	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Diprotodontia_a	ANCESTRAL SPECIES	14	ENSGT00940000158140 #8	ENSGT00940000161035 #9	ENSGT00390000011730 #10	ENSGT00940000162619 #11	ENSGT00940000162251 #12	ENSGT00390000003910 #13	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000162066 #20	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Common wonbat	MODERN SPECIES	312	COX4I1 (ENSVURG00010020967) #7	IRF8 (ENSVURG00010020961) #8	FOXF1 (ENSVURG00010020956) #9	MTHFSD (ENSVURG00010020952) #10	FOXC2 (ENSVURG00010020950) #11	FOXL1 (ENSVURG00010020948) #12	FBXO31 (ENSVURG00010020930) #14	ENSVURG00010020928 #15	ZCCHC14 (ENSVURG00010020925) #16	JPH3 (ENSVURG00010020916) #17	KLHDC4 (ENSVURG00010020910) #18	SLC7A5 (ENSVURG00010020901) #19	CA5A (ENSVURG00010020895) #20	BANP (ENSVURG00010020886) #21	ENSVURG00010020878	ZFPM1 (ENSVURG00010020876) #22	ENSVURG00010020863 #23	ZC3H18 (ENSVURG00010020855) #24	ENSVURG00010020849 #25	CYBA (ENSVURG00010020848) #26	MVD (ENSVURG00010020842) #27	SNAI3 (ENSVURG00010020840) #28	ENSVURG00010020838	ENSVURG00010020837 #29	CTU2 (ENSVURG00010020832) #30	PIEZO1 (ENSVURG00010020822) #31	ENSVURG00010020812 #32	APRT (ENSVURG00010020808) #33	GALNS (ENSVURG00010020797) #34	TRAPPC2L (ENSVURG00010020795) #35	ENSVURG00010020790 #37
koala	MODERN SPECIES	34	MTHFSD (ENSPCIG00000004783) #10	FOXC2 (ENSPCIG00000004805) #11	FOXL1 (ENSPCIG00000004810) #12	ENSPCIG00000031752	ENSPCIG00000009863 #13	FBXO31 (ENSPCIG00000009870) #14	ENSPCIG00000009873 #15	ZCCHC14 (ENSPCIG00000009877) #16	JPH3 (ENSPCIG00000007544) #17	KLHDC4 (ENSPCIG00000007537) #18	SLC7A5 (ENSPCIG00000007532) #19	CA5A (ENSPCIG00000007525) #20	BANP (ENSPCIG00000007514) #21	ENSPCIG00000008173	ENSPCIG00000007505	ENSPCIG00000007500 #22	ENSPCIG00000007498 #23	ZC3H18 (ENSPCIG00000007482) #24	IL17C (ENSPCIG00000007478) #25	CYBA (ENSPCIG00000007476) #26	MVD (ENSPCIG00000007474) #27	SNAI3 (ENSPCIG00000007471) #28	RNF166 (ENSPCIG00000030690) #29	CTU2 (ENSPCIG00000007465) #30	PIEZO1 (ENSPCIG00000007075) #31	ENSPCIG00000007043 #32	GALNS (ENSPCIG00000007040) #34	TRAPPC2L (ENSPCIG00000007039) #35	ENSPCIG00000007038 #37	CBFA2T3 (ENSPCIG00000007037)	ACSF3 (ENSPCIG00000014646)
Wallaby	MODERN SPECIES	8672																ENSMEUG00000008646 #22
Platypus	MODERN SPECIES	2	IRF8 (ENSOANG00000003741) #8	FOXF1 (ENSOANG00000007633) #9	MTHFSD (ENSOANG00000003740) #10	ENSOANG00000037236 #12	FOXC2 (ENSOANG00000049108) #11	ENSOANG00000028903	FBXO31 (ENSOANG00000003739) #14	ENSOANG00000040694 #15	ZCCHC14 (ENSOANG00000003350) #16	JPH3 (ENSOANG00000048414) #17	KLHDC4 (ENSOANG00000003737) #18	ENSOANG00000003735 #19	CA5A (ENSOANG00000046265) #20	BANP (ENSOANG00000003732) #21	ENSOANG00000048644	ZFPM1 (ENSOANG00000040393) #22	ENSOANG00000003211 #23	ZC3H18 (ENSOANG00000011368) #24	ENSOANG00000011367	CYBA (ENSOANG00000009702) #26	MVD (ENSOANG00000011366) #27	ENSOANG00000011365	ENSOANG00000044479 #29	CTU2 (ENSOANG00000009341) #30	PIEZO1 (ENSOANG00000009343) #31	CDT1 (ENSOANG00000013903) #32	APRT (ENSOANG00000038872) #33	GALNS (ENSOANG00000020659) #34	ENSOANG00000013901 #37	TRAPPC2L (ENSOANG00000044037) #35	CBFA2T3 (ENSOANG00000013900)
Sauria	ANCESTRAL SPECIES	14	ENSGT01030000235245	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Lepidosauria	ANCESTRAL SPECIES	29	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000010606.`b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Episquamata	ANCESTRAL SPECIES	11	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000010606.`b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00960000190114	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Laterata	ANCESTRAL SPECIES	28	ENSGT00390000006738.a	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000010606.`b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00960000190114	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Common wall lizard	MODERN SPECIES	16	ZNF276 (ENSPMRG00000009641)	ENSPMRG00000009657	VPS9D1 (ENSPMRG00000009665)	ENSPMRG00000009699	FBXO31 (ENSPMRG00000009716) #14	ENSPMRG00000009748 #15	ZCCHC14 (ENSPMRG00000009765) #16	JPH3 (ENSPMRG00000009778) #17	KLHDC4 (ENSPMRG00000009790) #18	SLC7A5 (ENSPMRG00000009812) #19	ENSPMRG00000009842	CA5B (ENSPMRG00000009844)	ENSPMRG00000009853	BANP (ENSPMRG00000009862) #21	ENSPMRG00000009874	ZFPM1 (ENSPMRG00000009886) #22	ENSPMRG00000009904	ENSPMRG00000009908 #23	ZC3H18 (ENSPMRG00000009914) #24	ENSPMRG00000009923	CYBA (ENSPMRG00000009927) #26	MVD (ENSPMRG00000009934) #27	SNAI3 (ENSPMRG00000009942) #28	RNF166 (ENSPMRG00000009949) #29	CTU2 (ENSPMRG00000009965) #30	PIEZO1 (ENSPMRG00000010137) #31	ENSPMRG00000010945	CDT1 (ENSPMRG00000010950) #32	APRT (ENSPMRG00000010959) #33	GALNS (ENSPMRG00000010964) #34	TRAPPC2L (ENSPMRG00000010973) #35
Argentine black and white tegu	MODERN SPECIES	51	ENSSMRG00000006619	GINS2 (ENSSMRG00000006622)	GSE1 (ENSSMRG00000006626)	CIBAR2 (ENSSMRG00000006662)	KIAA0513 (ENSSMRG00000006675)	FBXO31 (ENSSMRG00000006700) #14	ENSSMRG00000006705 #15	ZCCHC14 (ENSSMRG00000006713) #16	ENSSMRG00000006733	JPH3 (ENSSMRG00000006737) #17	KLHDC4 (ENSSMRG00000006741) #18	SLC7A5 (ENSSMRG00000006752) #19	CA5B (ENSSMRG00000006756)	BANP (ENSSMRG00000006763) #21	ENSSMRG00000006779	ZFPM1 (ENSSMRG00000006793) #22	ENSSMRG00000006805 #23	ENSSMRG00000006808	ENSSMRG00000006810 #24	ENSSMRG00000006815	CYBA (ENSSMRG00000006816) #26	MVD (ENSSMRG00000006817) #27	SNAI3 (ENSSMRG00000006819) #28	RNF166 (ENSSMRG00000006820) #29	CTU2 (ENSSMRG00000006821) #30	PIEZO1 (ENSSMRG00000006841) #31	SLC22A31 (ENSSMRG00000006876)	CDH15 (ENSSMRG00000006887)	ACSF3 (ENSSMRG00000006898)	CBFA2T3 (ENSSMRG00000006920)	PABPN1L (ENSSMRG00000006941) #37
Toxicofera	ANCESTRAL SPECIES	16	ENSGT00390000006738.a	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000010606.`b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00960000190114	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Elapidae	ANCESTRAL SPECIES	17	ENSGT01000000218436	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000010606.`b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00960000190114	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Elapidae_a	ANCESTRAL SPECIES	56				ENSGT00390000010285.d	ENSGT00390000010606.`b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00960000190114	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000165912
Acanthophiinae	ANCESTRAL SPECIES	55					ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00960000190114	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000165912
Mainland tiger snake	MODERN SPECIES	1556																ZFPM1 (ENSNSUG00000002168) #22
Eastern brown snake	MODERN SPECIES	127			ENSPTXG00000009550	ENSPTXG00000009551	KIAA0513 (ENSPTXG00000009552)	FBXO31 (ENSPTXG00000009553) #14	ENSPTXG00000009554 #15	ENSPTXG00000009555 #16	ENSPTXG00000009558 #16	JPH3 (ENSPTXG00000009560) #17	KLHDC4 (ENSPTXG00000009563) #18	ENSPTXG00000009617	SLC7A5 (ENSPTXG00000009619) #19	CA5B (ENSPTXG00000009621)	BANP (ENSPTXG00000009622) #21	ZFPM1 (ENSPTXG00000009623) #22	ENSPTXG00000009624 #23	ENSPTXG00000009625	ZC3H18 (ENSPTXG00000009626) #24	ENSPTXG00000009629	CYBA (ENSPTXG00000009630) #26	MVD (ENSPTXG00000009632) #27	SNAI3 (ENSPTXG00000009633) #28	RNF166 (ENSPTXG00000009634) #29	CTU2 (ENSPTXG00000009635) #30	PIEZO1 (ENSPTXG00000009662) #31	CDT1 (ENSPTXG00000010052) #32	APRT (ENSPTXG00000010053) #33	GALNS (ENSPTXG00000010054) #34	TRAPPC2L (ENSPTXG00000010055) #35	CBFA2T3 (ENSPTXG00000010057)
Blue-lipped sea krait	MODERN SPECIES	2945											JPH3 (ENSLLTG00000017407) #17	KLHDC4 (ENSLLTG00000017409) #18	SLC7A5 (ENSLLTG00000017411) #19	CA5B (ENSLLTG00000017412)	BANP (ENSLLTG00000017414) #21	ZFPM1 (ENSLLTG00000017419) #22	ENSLLTG00000017429 #23	ENSLLTG00000017434 #24	ENSLLTG00000017437 #24	ENSLLTG00000006432	CYBA (ENSLLTG00000006446) #26	MVD (ENSLLTG00000006475) #27	SNAI3 (ENSLLTG00000006504) #28	RNF166 (ENSLLTG00000006520) #29	CTU2 (ENSLLTG00000006540) #30	PIEZO1 (ENSLLTG00000006688) #31	CDT1 (ENSLLTG00000009505) #32	APRT (ENSLLTG00000009518) #33	GALNS (ENSLLTG00000009538) #34	ENSLLTG00000009585
Indian cobra	MODERN SPECIES	12	EMC8 (ENSNNAG00000018633)	ENSNNAG00000018637	GINS2 (ENSNNAG00000018640)	GSE1 (ENSNNAG00000018645)	CIBAR2 (ENSNNAG00000018654)	KIAA0513 (ENSNNAG00000018660)	FBXO31 (ENSNNAG00000018667) #14	ENSNNAG00000018670	ENSNNAG00000018672 #15	ZCCHC14 (ENSNNAG00000018676) #16	JPH3 (ENSNNAG00000018678) #17	KLHDC4 (ENSNNAG00000018682) #18	SLC7A5 (ENSNNAG00000018687) #19	CA5B (ENSNNAG00000018694)	BANP (ENSNNAG00000007330) #21	ZFPM1 (ENSNNAG00000007355) #22	ENSNNAG00000007391 #23	ENSNNAG00000007466	ZC3H18 (ENSNNAG00000007489) #24	ENSNNAG00000007528	CYBA (ENSNNAG00000007562) #26	MVD (ENSNNAG00000007617) #27	SNAI3 (ENSNNAG00000007656) #28	RNF166 (ENSNNAG00000007672) #29	CTU2 (ENSNNAG00000007692) #30	PIEZO1 (ENSNNAG00000007884) #31	CDT1 (ENSNNAG00000009626) #32	APRT (ENSNNAG00000009699) #33	GALNS (ENSNNAG00000009762) #34	TRAPPC2L (ENSNNAG00000010280) #35	PABPN1L (ENSNNAG00000010299) #37
tuatara	MODERN SPECIES	59	ENSSPUG00000007736	GINS2 (ENSSPUG00000007729)	GSE1 (ENSSPUG00000007720)	CIBAR2 (ENSSPUG00000007681)	ENSSPUG00000007666	KIAA0513 (ENSSPUG00000007650)	FBXO31 (ENSSPUG00000007642) #14	ENSSPUG00000007629 #15	ENSSPUG00000007612 #16	ENSSPUG00000007599 #16	JPH3 (ENSSPUG00000007585) #17	KLHDC4 (ENSSPUG00000007565) #18	SLC7A5 (ENSSPUG00000007540) #19	CA5B (ENSSPUG00000007533)	BANP (ENSSPUG00000007524) #21	ZFPM1 (ENSSPUG00000007519) #22	ENSSPUG00000007388 #23	ENSSPUG00000007367 #24	ENSSPUG00000007364 #24	IL17C (ENSSPUG00000007358) #25	CYBA (ENSSPUG00000007346) #26	MVD (ENSSPUG00000007336) #27	SNAI3 (ENSSPUG00000007322) #28	CTU2 (ENSSPUG00000007293) #30	ENSSPUG00000007086 #31	CDT1 (ENSSPUG00000007063) #32	APRT (ENSSPUG00000007056) #33	GALNS (ENSSPUG00000007049) #34	ENSSPUG00000007047	PABPN1L (ENSSPUG00000007031) #37	CBFA2T3 (ENSSPUG00000007014)
Archelosauria	ANCESTRAL SPECIES	16	ENSGT01030000235245	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Archosauria	ANCESTRAL SPECIES	14	ENSGT00390000006738.a	ENSGT01030000235245	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Aves	ANCESTRAL SPECIES	22	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Neognathae	ANCESTRAL SPECIES	13	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Galloanserae	ANCESTRAL SPECIES	12	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Anatidae	ANCESTRAL SPECIES	17	ENSGT00940000164598	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535.d	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000015359 #27	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00950000182909.b.b.b #29	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000	ENSGT00940000160118
Pink-footed goose	MODERN SPECIES	125						KIAA0513 (ENSABRG00000021478)	FBXO31 (ENSABRG00000021497) #14	ENSABRG00000021501 #15	ZCCHC14 (ENSABRG00000021504) #16	JPH3 (ENSABRG00000021507) #17	KLHDC4 (ENSABRG00000021508) #18	SLC7A5 (ENSABRG00000021512) #19	CA5B (ENSABRG00000021515)	BANP (ENSABRG00000021520) #21	ZNF469 (ENSABRG00000021527)	ZFPM1 (ENSABRG00000021528) #22	CIDEC (ENSABRG00000021529)	ZC3H18 (ENSABRG00000021533) #24	ENSABRG00000021539	IL17C (ENSABRG00000021541) #25	MVD (ENSABRG00000021544) #27	CTU2 (ENSABRG00000021547) #30	RNF166 (ENSABRG00000021553) #29	PIEZO1 (ENSABRG00000021559) #31	CDT1 (ENSABRG00000021584) #32	APRT (ENSABRG00000021588) #33	CBFA2T3 (ENSABRG00000021590)	GALNS (ENSABRG00000021594) #34	TRAPPC2L (ENSABRG00000021602) #35	PABPN1L (ENSABRG00000000012) #37	ACSF3 (ENSABRG00000000020)
Duck	MODERN SPECIES	3	EMC8 (ENSAPLG00000026906)	GINS2 (ENSAPLG00000024989)	GSE1 (ENSAPLG00000020408)	ENSAPLG00000026309 #14	ENSAPLG00000005230	ENSAPLG00000005355 #14	ENSAPLG00000020659 #15	ZCCHC14 (ENSAPLG00000005595) #16	JPH3 (ENSAPLG00000006426) #17	KLHDC4 (ENSAPLG00000006655) #18	SLC7A5 (ENSAPLG00000029758) #19	CA5B (ENSAPLG00000007542)	ENSAPLG00000017541	BANP (ENSAPLG00000007452) #21	ENSAPLG00000022085	ZFPM1 (ENSAPLG00000025216) #22	ZC3H18 (ENSAPLG00000007302) #24	CTU2 (ENSAPLG00000007265) #30	ENSAPLG00000018541 #31	ENSAPLG00000029442	GALNS (ENSAPLG00000014112) #34	TRAPPC2L (ENSAPLG00000014015) #35	PABPN1L (ENSAPLG00000009174) #37	ACSF3 (ENSAPLG00000003332)	ANKRD11 (ENSAPLG00000019829)	SPG7 (ENSAPLG00000004074)	ENSAPLG00000006484	ENSAPLG00000006256	ENSAPLG00000020655	ENSAPLG00000027720	DPEP1 (ENSAPLG00000020169)
Phasianidae	ANCESTRAL SPECIES	12	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b.e #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Phasianidae_b	ANCESTRAL SPECIES	14	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b.e #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Chicken	MODERN SPECIES	2	ENSGALG00010006824	GINS2 (ENSGALG00010006840)	GSE1 (ENSGALG00010006877)	KIAA0513 (ENSGALG00010008592)	FBXO31 (ENSGALG00010006939) #14	MAP1LC3B (ENSGALG00010006953) #15	ZCCHC14 (ENSGALG00010006961) #16	JPH3 (ENSGALG00010009126) #17	ENSGALG00010009807	KLHDC4 (ENSGALG00010009235) #18	SLC7A5 (ENSGALG00010010461) #19	CA5B (ENSGALG00010009365)	BANP (ENSGALG00010009394) #21	ENSGALG00010009470	ENSGALG00010009504	ZFPM1 (ENSGALG00010009511) #22	ENSGALG00010009815	CIDEC (ENSGALG00010009557)	ZC3H18 (ENSGALG00010009569) #24	IL17C (ENSGALG00010009627) #25	CYBA (ENSGALG00010009637) #26	MVD (ENSGALG00010009646) #27	RNF166 (ENSGALG00010008476) #29	CTU2 (ENSGALG00010008486) #30	PIEZO1 (ENSGALG00010008514) #31	CDT1 (ENSGALG00010007887) #32	APRT (ENSGALG00010007899) #33	GALNS (ENSGALG00010007909) #34	TRAPPC2L (ENSGALG00010007912) #35	PABPN1L (ENSGALG00010007913) #37	CBFA2T3 (ENSGALG00010007930)
Japanese quail	MODERN SPECIES	2	ENSCJPG00005014749	GINS2 (ENSCJPG00005014750)	GSE1 (ENSCJPG00005014751)	KIAA0513 (ENSCJPG00005014752)	FBXO31 (ENSCJPG00005014753) #14	ENSCJPG00005014754 #15	ZCCHC14 (ENSCJPG00005014755) #16	JPH3 (ENSCJPG00005014756) #17	KLHDC4 (ENSCJPG00005014757) #18	SLC7A5 (ENSCJPG00005014759) #19	ENSCJPG00005014765	ENSCJPG00005014926	BANP (ENSCJPG00005014930) #21	ENSCJPG00005014934	ENSCJPG00005014935	ZFPM1 (ENSCJPG00005014936) #22	CIDEC (ENSCJPG00005014937)	ZC3H18 (ENSCJPG00005014938) #24	IL17C (ENSCJPG00005014995) #25	CYBA (ENSCJPG00005014996) #26	MVD (ENSCJPG00005014997) #27	RNF166 (ENSCJPG00005014998) #29	CTU2 (ENSCJPG00005014999) #30	CDT1 (ENSCJPG00005015007) #32	ENSCJPG00005015009	APRT (ENSCJPG00005015010) #33	GALNS (ENSCJPG00005015012) #34	TRAPPC2L (ENSCJPG00005015030) #35	PABPN1L (ENSCJPG00005015031) #37	CBFA2T3 (ENSCJPG00005015032)	ACSF3 (ENSCJPG00005015048)
Neognathae_b	ANCESTRAL SPECIES	15	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e
Neognathae_c	ANCESTRAL SPECIES	18	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000.h
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	19	ENSSHBG00005011780	ENSSHBG00005011767	ENSSHBG00005011741	KIAA0513 (ENSSHBG00005011719)	ENSSHBG00005011653 #14	ENSSHBG00005011633 #15	ENSSHBG00005011593 #16	ENSSHBG00005011574 #17	KLHDC4 (ENSSHBG00005011563) #18	ENSSHBG00005011539 #19	CA5B (ENSSHBG00005011444)	ENSSHBG00005011393 #21	ENSSHBG00005011371	ENSSHBG00005011347	ENSSHBG00005011325	ENSSHBG00005011302 #22	CIDEC (ENSSHBG00005011286)	ZC3H18 (ENSSHBG00005011264) #24	IL17C (ENSSHBG00005011247) #25	CYBA (ENSSHBG00005011230) #26	MVD (ENSSHBG00005011204) #27	RNF166 (ENSSHBG00005011186) #29	CTU2 (ENSSHBG00005011163) #30	CDT1 (ENSSHBG00005011129) #32	APRT (ENSSHBG00005011101) #33	GALNS (ENSSHBG00005011075) #34	TRAPPC2L (ENSSHBG00005011050) #35	CBFA2T3 (ENSSHBG00005011017)	ENSSHBG00005010978	ENSSHBG00005010672	ENSSHBG00005010598
Kakapo	MODERN SPECIES	4	ENSSHBG00005000284	ENSSHBG00005000282	ENSSHBG00005000279	ENSSHBG00005000276	ENSSHBG00005000269	ENSSHBG00005000266	ENSSHBG00005000257	ENSSHBG00005000255	ENSSHBG00005000235	ENSSHBG00005000207	ENSSHBG00005000193	ENSSHBG00005000178	ENSSHBG00005000163	ENSSHBG00005000127	ENSSHBG00005000111 #21	ENSSHBG00005000093 #22	ENSSHBG00005000085 #19	ENSSHBG00005000078	ENSSHBG00005000070 #17	ENSSHBG00005000061 #16	ENSSHBG00005000056 #15	ENSSHBG00005000041 #14	ENSSHBG00005000008	ENSSHBG00005000404	ENSSHBG00005000403	ENSSHBG00005000401	ENSSHBG00005000400 #7	ENSSHBG00005000397	ENSSHBG00005000395 #8	ENSSHBG00005000393 #9	ENSSHBG00005000392
Golden eagle	MODERN SPECIES	25	COX4I1 (ENSACCG00020003327) #7	EMC8 (ENSACCG00020003310)	ENSACCG00020003299	GINS2 (ENSACCG00020003285)	GSE1 (ENSACCG00020003227)	KIAA0513 (ENSACCG00020003188)	FBXO31 (ENSACCG00020003158) #14	ENSACCG00020003138 #15	ZCCHC14 (ENSACCG00020003119) #16	JPH3 (ENSACCG00020003107) #17	KLHDC4 (ENSACCG00020003087) #18	SLC7A5 (ENSACCG00020003066) #19	CA5B (ENSACCG00020003048)	BANP (ENSACCG00020003033) #21	ENSACCG00020003008	ZFPM1 (ENSACCG00020002985) #22	CIDEC (ENSACCG00020002959)	ZC3H18 (ENSACCG00020002926) #24	IL17C (ENSACCG00020002897) #25	CYBA (ENSACCG00020002886) #26	MVD (ENSACCG00020002872) #27	SNAI3 (ENSACCG00020002858) #28	RNF166 (ENSACCG00020002844) #29	CTU2 (ENSACCG00020002823) #30	CDT1 (ENSACCG00020002531) #32	APRT (ENSACCG00020002510) #33	GALNS (ENSACCG00020002477) #34	TRAPPC2L (ENSACCG00020002461) #35	PABPN1L (ENSACCG00020002453) #37	CBFA2T3 (ENSACCG00020002396)	ACSF3 (ENSACCG00020002335)
Passeriformes	ANCESTRAL SPECIES	13	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000
Passeriformes_d	ANCESTRAL SPECIES	13	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000	ENSGT00940000160118
Passeriformes_g	ANCESTRAL SPECIES	17	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000	ENSGT00940000160118
Passeroidea	ANCESTRAL SPECIES	17	ENSGT00390000002407.d #7	ENSGT00390000006738.a	ENSGT01040000241165	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a.r	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37	ENSGT00950000183176.b.e	ENSGT00940000157000	ENSGT00940000160118
Zebra finch	MODERN SPECIES	2	IRF8 (ENSTGUG00000004127) #8	ENSTGUG00000004124	ENSTGUG00000004109 #7	EMC8 (ENSTGUG00000004096)	GSE1 (ENSTGUG00000007561)	KIAA0513 (ENSTGUG00000007582)	FBXO31 (ENSTGUG00000007593) #14	ENSTGUG00000029453 #15	ZCCHC14 (ENSTGUG00000007612) #16	JPH3 (ENSTGUG00000007640) #17	KLHDC4 (ENSTGUG00000007641) #18	SLC7A5 (ENSTGUG00000007655) #19	CA5B (ENSTGUG00000007678)	BANP (ENSTGUG00000007690) #21	ENSTGUG00000029627	ZFPM1 (ENSTGUG00000023942) #22	ENSTGUG00000007712	ZC3H18 (ENSTGUG00000007717) #24	IL17C (ENSTGUG00000007718) #25	ENSTGUG00000007724 #27	RNF166 (ENSTGUG00000007729) #29	ENSTGUG00000029764	CDT1 (ENSTGUG00000007741) #32	APRT (ENSTGUG00000007746) #33	GALNS (ENSTGUG00000007758) #34	TRAPPC2L (ENSTGUG00000022026) #35	PABPN1L (ENSTGUG00000023785) #37	CBFA2T3 (ENSTGUG00000007782)	ENSTGUG00000021287	ACSF3 (ENSTGUG00000007811)	SLC22A31 (ENSTGUG00000028328)
Common canary	MODERN SPECIES	14	COX4I1 (ENSSCAG00000006803) #7	EMC8 (ENSSCAG00000006805)	ENSSCAG00000006813	GINS2 (ENSSCAG00000006817)	ENSSCAG00000006822	GSE1 (ENSSCAG00000006831)	KIAA0513 (ENSSCAG00000006843)	FBXO31 (ENSSCAG00000006850) #14	ENSSCAG00000006862 #15	ZCCHC14 (ENSSCAG00000006868) #16	JPH3 (ENSSCAG00000006873) #17	KLHDC4 (ENSSCAG00000006876) #18	SLC7A5 (ENSSCAG00000006900) #19	CA5B (ENSSCAG00000007027)	BANP (ENSSCAG00000007031) #21	ZFPM1 (ENSSCAG00000007040) #22	CIDEC (ENSSCAG00000007041)	ENSSCAG00000007045	IL17C (ENSSCAG00000007049) #25	CYBA (ENSSCAG00000007052) #26	MVD (ENSSCAG00000007057) #27	RNF166 (ENSSCAG00000007060) #29	CTU2 (ENSSCAG00000007061) #30	CDT1 (ENSSCAG00000007231) #32	APRT (ENSSCAG00000007236) #33	GALNS (ENSSCAG00000007244) #34	TRAPPC2L (ENSSCAG00000007254) #35	PABPN1L (ENSSCAG00000007261) #37	CBFA2T3 (ENSSCAG00000007278)	ACSF3 (ENSSCAG00000007285)	CDH15 (ENSSCAG00000007301)
Great tit	MODERN SPECIES	2	GINS2 (ENSPMJG00000013914)	ENSPMJG00000013913	GSE1 (ENSPMJG00000013905)	KIAA0513 (ENSPMJG00000013903)	FBXO31 (ENSPMJG00000013902) #14	ENSPMJG00000013901 #15	ZCCHC14 (ENSPMJG00000013900) #16	JPH3 (ENSPMJG00000013899) #17	KLHDC4 (ENSPMJG00000013898) #18	SLC7A5 (ENSPMJG00000013896) #19	CA5B (ENSPMJG00000013893)	ENSPMJG00000013891	BANP (ENSPMJG00000013884) #21	ENSPMJG00000013880	ZNF469 (ENSPMJG00000013879)	ZFPM1 (ENSPMJG00000013878) #22	CIDEC (ENSPMJG00000013875)	ZC3H18 (ENSPMJG00000013852) #24	IL17C (ENSPMJG00000013851) #25	CYBA (ENSPMJG00000013850) #26	MVD (ENSPMJG00000013849) #27	RNF166 (ENSPMJG00000013848) #29	CTU2 (ENSPMJG00000013847) #30	PIEZO1 (ENSPMJG00000013841) #31	CDT1 (ENSPMJG00000013840) #32	APRT (ENSPMJG00000013839) #33	GALNS (ENSPMJG00000013838) #34	TRAPPC2L (ENSPMJG00000013835) #35	PABPN1L (ENSPMJG00000013834) #37	CBFA2T3 (ENSPMJG00000013833)	ENSPMJG00000013831
Australian saltwater crocodile	MODERN SPECIES	35	ENSCPRG00005006710	GINS2 (ENSCPRG00005006713)	GSE1 (ENSCPRG00005006721)	ENSCPRG00005006724	CIBAR2 (ENSCPRG00005006729)	KIAA0513 (ENSCPRG00005006748)	FBXO31 (ENSCPRG00005006779) #14	ENSCPRG00005006789 #15	ZCCHC14 (ENSCPRG00005006802) #16	JPH3 (ENSCPRG00005006814) #17	KLHDC4 (ENSCPRG00005006819) #18	SLC7A5 (ENSCPRG00005006827) #19	CA5B (ENSCPRG00005006836)	BANP (ENSCPRG00005006883) #21	ENSCPRG00005006907	ZFPM1 (ENSCPRG00005006922) #22	CIDEC (ENSCPRG00005006931)	ENSCPRG00005006935 #23	ZC3H18 (ENSCPRG00005006951) #24	IL17C (ENSCPRG00005006982) #25	CYBA (ENSCPRG00005006986) #26	MVD (ENSCPRG00005006999) #27	RNF166 (ENSCPRG00005007009) #29	CTU2 (ENSCPRG00005007019) #30	PIEZO1 (ENSCPRG00005007114) #31	CDT1 (ENSCPRG00005007690) #32	APRT (ENSCPRG00005007693) #33	GALNS (ENSCPRG00005007702) #34	TRAPPC2L (ENSCPRG00005007718) #35	PABPN1L (ENSCPRG00005007723) #37	CBFA2T3 (ENSCPRG00005007731)
Cryptodira	ANCESTRAL SPECIES	14	ENSGT01030000235245	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Testudinoidea	ANCESTRAL SPECIES	13	ENSGT00700000104539.b.a	ENSGT00390000010285.d.d	ENSGT00940000157596.i.b	ENSGT00390000009535	ENSGT00390000001368.d #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C.e.b #19	ENSGT00940000175810	ENSGT00940000155581.C.e.a #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887.a #25	ENSGT00940000161887.b #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35
Emydidae	ANCESTRAL SPECIES	47	ENSGT00700000104539.b.a	ENSGT00390000010285.d.d	ENSGT00940000157596.i.b	ENSGT00390000009535	ENSGT00390000001368.d #14	ENSGT00940000154158.o #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C.e.b #19	ENSGT00940000175810	ENSGT00940000155581.C.e.a #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887.b #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797.k #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35	ENSGT00940000161325 #37
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2272	ENSTMTG00000010033	ENSTMTG00000010038	ENSTMTG00000010059	ENSTMTG00000010097	ENSTMTG00000010126	ENSTMTG00000010150 #14	ENSTMTG00000010169 #15	ENSTMTG00000010182 #16	ENSTMTG00000010222 #16	ENSTMTG00000010234 #17	ENSTMTG00000010262 #18	ENSTMTG00000010291	ENSTMTG00000010310 #19	ENSTMTG00000010363	ENSTMTG00000010393 #21	ENSTMTG00000010415 #22	ENSTMTG00000010531	ENSTMTG00000010595 #23	ENSTMTG00000010649 #24	ENSTMTG00000010674 #25	ENSTMTG00000010692 #26	ENSTMTG00000010709 #27	ENSTMTG00000010754 #28	ENSTMTG00000010773 #29	ENSTMTG00000010792 #30	ENSTMTG00000011027 #31	ENSTMTG00000012206 #32	ENSTMTG00000012234 #33	ENSTMTG00000012249 #34	ENSTMTG00000012275 #35	ENSTMTG00000012298 #37
Three-toed box turtle	MODERN SPECIES	2267	ENSTMTG00000013164	ENSTMTG00000013179	ENSTMTG00000013206	ENSTMTG00000013261	ENSTMTG00000013285	ENSTMTG00000013295	ENSTMTG00000013321 #14	ENSTMTG00000013374 #15	ENSTMTG00000013381 #16	ENSTMTG00000013415 #17	ENSTMTG00000013437 #18	ENSTMTG00000013463 #19	ENSTMTG00000013473 #19	ENSTMTG00000013488	ENSTMTG00000008763 #21	ENSTMTG00000008785 #22	ENSTMTG00000008914	ENSTMTG00000008929 #23	ENSTMTG00000008966 #24	ENSTMTG00000008978 #25	ENSTMTG00000008987 #26	ENSTMTG00000009001 #27	ENSTMTG00000009034 #28	ENSTMTG00000009046 #29	ENSTMTG00000009063 #30	ENSTMTG00000009221 #31	ENSTMTG00000010423 #32	ENSTMTG00000010450 #33	ENSTMTG00000010466 #34	ENSTMTG00000010499 #35	ENSTMTG00000010537 #37
painted turtle	MODERN SPECIES	708	GINS2 (ENSCPBG00000023566)	GSE1 (ENSCPBG00000023555)	CIBAR2 (ENSCPBG00000023544)	ENSCPBG00000023540	ENSCPBG00000023538	KIAA0513 (ENSCPBG00000023532)	FBXO31 (ENSCPBG00000023527) #14	ENSCPBG00000023524 #15	ZCCHC14 (ENSCPBG00000023517) #16	JPH3 (ENSCPBG00000023516) #17	KLHDC4 (ENSCPBG00000023515) #18	SLC7A5 (ENSCPBG00000023512) #19	CA5B (ENSCPBG00000023511)	BANP (ENSCPBG00000023508) #21	ENSCPBG00000023504	ZFPM1 (ENSCPBG00000023499) #22	CIDEC (ENSCPBG00000023495)	ENSCPBG00000023492 #23	ZC3H18 (ENSCPBG00000023488) #24	IL17C (ENSCPBG00000023486) #25	CYBA (ENSCPBG00000023484) #26	MVD (ENSCPBG00000023478) #27	ENSCPBG00000023476	SNAI3 (ENSCPBG00000023474) #28	RNF166 (ENSCPBG00000023472) #29	CTU2 (ENSCPBG00000023471) #30	PIEZO1 (ENSCPBG00000023456) #31	CDT1 (ENSCPBG00000023447) #32	APRT (ENSCPBG00000023446) #33	GALNS (ENSCPBG00000023444) #34	TRAPPC2L (ENSCPBG00000023442) #35
Testudinidae	ANCESTRAL SPECIES	17	ENSGT00390000007838	ENSGT00700000104539.b.a	ENSGT00390000010285.d.d	ENSGT00940000157596.i.b	ENSGT00390000009535	ENSGT00390000006922.r.a	ENSGT00390000001368.c #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000175810	ENSGT00940000155581.C.e.a #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000063823.b.a #22	ENSGT00390000018596.A.a.a	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887.a #25	ENSGT00940000161887.b #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000154511.a #28	ENSGT00950000182909.b.b.b #29	ENSGT00390000008797 #30	ENSGT00940000157348 #31	ENSGT00390000012337 #32	ENSGT00390000017259 #33	ENSGT00940000157787 #34	ENSGT00510000047505 #35
Goode s thornscrub tortoise	MODERN SPECIES	3	ENSGEVG00005004217	GINS2 (ENSGEVG00005004238)	GSE1 (ENSGEVG00005004284)	CIBAR2 (ENSGEVG00005004370)	KIAA0513 (ENSGEVG00005004439)	ENSGEVG00005004468	FBXO31 (ENSGEVG00005004604) #14	ENSGEVG00005004695 #15	ZCCHC14 (ENSGEVG00005004723) #16	JPH3 (ENSGEVG00005004759) #17	KLHDC4 (ENSGEVG00005004795) #18	ENSGEVG00005004830	SLC7A5 (ENSGEVG00005004874) #19	CA5B (ENSGEVG00005004935)	BANP (ENSGEVG00005004970) #21	ZFPM1 (ENSGEVG00005005003) #22	CIDEC (ENSGEVG00005005042)	ENSGEVG00005005124 #23	ZC3H18 (ENSGEVG00005005191) #24	ENSGEVG00005005213	IL17C (ENSGEVG00005005240) #25	CYBA (ENSGEVG00005005265) #26	MVD (ENSGEVG00005005288) #27	SNAI3 (ENSGEVG00005005312) #28	RNF166 (ENSGEVG00005005336) #29	CTU2 (ENSGEVG00005005353) #30	PIEZO1 (ENSGEVG00005005511) #31	CDT1 (ENSGEVG00005006082) #32	GALNS (ENSGEVG00005006126) #34	TRAPPC2L (ENSGEVG00005006191) #35	PABPN1L (ENSGEVG00005006215) #37
Abingdon island giant tortoise	MODERN SPECIES	2466																ZFPM1 (ENSCABG00000003311) #22	CIDEC (ENSCABG00000003320)	ENSCABG00000003332 #23	ZC3H18 (ENSCABG00000003350) #24	IL17C (ENSCABG00000003482) #25	CYBA (ENSCABG00000003485) #26	MVD (ENSCABG00000003489) #27	SNAI3 (ENSCABG00000003494) #28	RNF166 (ENSCABG00000003498) #29	CTU2 (ENSCABG00000003501) #30	PIEZO1 (ENSCABG00000003533) #31	CDT1 (ENSCABG00000003970) #32	APRT (ENSCABG00000003974) #33	GALNS (ENSCABG00000003976) #34	TRAPPC2L (ENSCABG00000003983) #35	PABPN1L (ENSCABG00000003987) #37
Anura	ANCESTRAL SPECIES	10	ENSGT00940000157830	ENSGT00940000157655	ENSGT00940000156368.b	ENSGT00390000010606	ENSGT00940000158322.g.b	ENSGT00390000009535	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000161887 #25	ENSGT00390000002290 #26	ENSGT00390000015359 #27	ENSGT00940000159757	ENSGT00940000160687	ENSGT00940000165234	ENSGT00940000159836	ENSGT00940000167949.b	ENSGT00550000074924	ENSGT00940000160924	ENSGT00390000000707	ENSGT00390000003210	ENSGT00940000160407
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000019653	ENSLLEG00000019322	KIAA0513 (ENSLLEG00000019138)	FBXO31 (ENSLLEG00000018924) #14	ENSLLEG00000018855 #15	ZCCHC14 (ENSLLEG00000018586) #16	ENSLLEG00000018512	JPH3 (ENSLLEG00000018212) #17	KLHDC4 (ENSLLEG00000017932) #18	SLC7A5 (ENSLLEG00000017728) #19	CA5B (ENSLLEG00000017552)	ENSLLEG00000017522	BANP (ENSLLEG00000017195) #21	ENSLLEG00000017151	ENSLLEG00000017134	ZFPM1 (ENSLLEG00000016686) #22	ENSLLEG00000016585	ENSLLEG00000016515 #23	ENSLLEG00000016489	ZC3H18 (ENSLLEG00000016317) #24	IL17C (ENSLLEG00000016273) #25	CYBA (ENSLLEG00000016189) #26	MVD (ENSLLEG00000016082) #27	CA7 (ENSLLEG00000016009)	PDP2 (ENSLLEG00000015997)	ENSLLEG00000015769	RRAD (ENSLLEG00000015704)	ENSLLEG00000015583	ENSLLEG00000015424	ENSLLEG00000014389	ENSLLEG00000014214
Frog	MODERN SPECIES	4	stk35 (ENSXETG00000004468)	ENSXETG00000042214	cibar2 (ENSXETG00000017416)	ENSXETG00000017418	kiaa0513 (ENSXETG00000017409)	fbxo31 (ENSXETG00000017407) #14	map1lc3b (ENSXETG00000046526) #15	zcchc14 (ENSXETG00000017403) #16	jph3 (ENSXETG00000017402) #17	klhdc4 (ENSXETG00000017380) #18	slc7a5 (ENSXETG00000016585) #19	ca5b (ENSXETG00000016594)	ENSXETG00000048591	znf516 (ENSXETG00000016600) #21	znf469 (ENSXETG00000037178)	zfpm1 (ENSXETG00000023988) #22	trhr2 (ENSXETG00000023989) #23	zc3h18 (ENSXETG00000036558) #24	ENSXETG00000042766	il17c (ENSXETG00000017433)	cyba (ENSXETG00000017431) #26	mvd (ENSXETG00000017427) #27	ca7 (ENSXETG00000017420)	ENSXETG00000017419	cdh16 (ENSXETG00000017410)	rrad (ENSXETG00000017408)	ENSXETG00000048573	ces5a (ENSXETG00000039742)	ENSXETG00000044376	uba2 (ENSXETG00000002374)	wtip (ENSXETG00000042605)
Coelacanth	MODERN SPECIES	258	ENSLACG00000009007	ENSLACG00000009417	FBXO31 (ENSLACG00000009592) #14	map1lc3b (ENSLACG00000010397) #15	ENSLACG00000010970 #16	ENSLACG00000012226 #16	JPH3 (ENSLACG00000012478) #17	ENSLACG00000012854	KLHDC4 (ENSLACG00000013964) #18	SLC7A5 (ENSLACG00000014626) #19	CA5B (ENSLACG00000015179)	BANP (ENSLACG00000015561) #21	ENSLACG00000018005	ENSLACG00000018189	ENSLACG00000022274	ZFPM1 (ENSLACG00000018391) #22
Actinopterygii	ANCESTRAL SPECIES	49	ENSGT00390000003210	ENSGT00390000000707	ENSGT00940000160924	ENSGT00550000074924	ENSGT00940000158339	ENSGT00940000155200	ENSGT00390000001368 #14	ENSGT00940000154158 #15	ENSGT00520000055637.A.b #16	ENSGT00940000158707.a.b #17	ENSGT00390000003374 #18	ENSGT00940000155581.C #19	ENSGT00940000156978	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000156938	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B	ENSGT00390000009212
Neopterygii	ANCESTRAL SPECIES	25	ENSGT00940000157319	ENSGT00390000018698	ENSGT00940000166411	ENSGT00940000159150	ENSGT00940000156704	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000160275	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00390000011116 #21	ENSGT00530000065415	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B
Osteoglossocephalai	ANCESTRAL SPECIES		ENSGT00960000187029	ENSGT00530000063956.b.a	ENSGT01030000234925	ENSGT00390000018698	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.e	ENSGT00940000156938.f	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410
Clupeocephala	ANCESTRAL SPECIES	2	ENSGT01030000235114	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.f	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B
Euteleosteomorpha	ANCESTRAL SPECIES	1	ENSGT01030000235114	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.f	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B
Protacanthopterygii	ANCESTRAL SPECIES	25	ENSGT01030000235114	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.f	ENSGT00390000002381.b.d	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	137	ENSGT00390000015057.b	ENSGT01030000235114.c	ENSGT00530000063956.b.a	ENSGT00390000018698.d	ENSGT01060000248783	ENSGT00940000156704.d	ENSGT00940000166411	ENSGT00940000157543.fb.b	ENSGT00390000012498.c	ENSGT00940000157517.m.a	ENSGT00390000018220.e	ENSGT00940000155273.i.b	ENSGT00940000162251.j #12	ENSGT00390000009535	ENSGT00940000163421.a.c.p	ENSGT00530000063823.b.a.g #22
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00390000015057.b	ENSGT01030000235114.c	ENSGT00530000063956.b.a	ENSGT00390000018698.d	ENSGT01060000248783	ENSGT00940000156704.d	ENSGT00940000166411	ENSGT00940000157543.fb.b	ENSGT00390000012498.c	ENSGT00940000157517.m.a	ENSGT00390000018220.e	ENSGT00940000155273.i.b	ENSGT00940000162251.j #12	ENSGT00390000009535	ENSGT00940000163421.a.c.p	ENSGT00530000063823.b.a.g #22	ENSGT01100000263484.B.a.a #23	ENSGT00730000111190.f #24	ENSGT00940000166375.g.a	ENSGT00390000010337.B.a.a.l	ENSGT00400000025006.d	ENSGT00940000153533.b.c	ENSGT00390000014299.e	ENSGT00940000156938.f.d	ENSGT00390000002381.b.d.a.a	ENSGT00390000006293.s.b	ENSGT00390000005410.f	ENSGT00940000155218.B.u.a	ENSGT00530000064134.a.a	ENSGT00960000187150	ENSGT00940000158492.c
Salmo	ANCESTRAL SPECIES	9	ENSGT01030000235114.c	ENSGT00530000063956.b.a	ENSGT00390000018698.d	ENSGT01060000248783	ENSGT00940000156704.d	ENSGT00940000166411	ENSGT00940000157543.fb.b	ENSGT00390000012498.c	ENSGT00940000157517.m.a	ENSGT00390000018220.e	ENSGT00940000155273.i.b	ENSGT00990000212684	ENSGT00940000162251.j #12	ENSGT00390000009535	ENSGT00940000163421.a.c.p	ENSGT00530000063823.b.a.g #22	ENSGT01100000263484.B.a.a #23	ENSGT00730000111190.f #24	ENSGT00940000166375.g.a	ENSGT00390000010337.B.a.a.l	ENSGT00400000025006.d	ENSGT00940000153533.b.c	ENSGT00390000014299.e	ENSGT00940000156938.f.d	ENSGT00390000002381.b.d.a.a	ENSGT00390000006293.s.b	ENSGT00390000005410.f	ENSGT00940000155218.B.u.a	ENSGT00530000064134.a.a.a	ENSGT00940000158492.c	ENSGT00940000163703.b.b
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000106292	ENSSSAG00000103785	tat (ENSSSAG00000043630)	zgc:56622 (ENSSSAG00000007066)	klhl36 (ENSSSAG00000007057)	cotl1 (ENSSSAG00000098390)	ENSSSAG00000091285	plcg2 (ENSSSAG00000006779)	ENSSSAG00000006567	ENSSSAG00000006490	ENSSSAG00000094793	foxl1 (ENSSSAG00000046408) #12	kiaa0513 (ENSSSAG00000006384)	ENSSSAG00000115335	ENSSSAG00000104260	zfpm1 (ENSSSAG00000006344) #22	trhr2 (ENSSSAG00000006287) #23	zc3h18 (ENSSSAG00000006103) #24	ENSSSAG00000006069	has3 (ENSSSAG00000082559)	ENSSSAG00000093260	ENSSSAG00000069460	wfdc1 (ENSSSAG00000069436)	kcng4 (ENSSSAG00000069433)	ENSSSAG00000069428	ENSSSAG00000050779	ENSSSAG00000108830	ENSSSAG00000069422	ENSSSAG00000050795	si:ch211-216l23.2 (ENSSSAG00000069403)	znf423 (ENSSSAG00000069285)
River trout	MODERN SPECIES	8	vps9d1 (ENSSTUG00000015964)	si:dkey-238o13.4 (ENSSTUG00000016146)	ENSSTUG00000016166	pdf (ENSSTUG00000016167)	ENSSTUG00000016173	tat (ENSSTUG00000016238)	zgc:56622 (ENSSTUG00000017919)	cotl1 (ENSSTUG00000017933)	plcg2 (ENSSTUG00000018002)	CMIP (ENSSTUG00000018876)	GAN (ENSSTUG00000018910)	ENSSTUG00000018925	foxl1 (ENSSTUG00000018938) #12	kiaa0513 (ENSSTUG00000018952)	ENSSTUG00000018999	zfpm1 (ENSSTUG00000019008) #22	ENSSTUG00000019040	trhr2 (ENSSTUG00000019055) #23	zc3h18 (ENSSTUG00000019089) #24	ENSSTUG00000019154	has3 (ENSSTUG00000019168)	chtf8 (ENSSTUG00000019184)	utp4 (ENSSTUG00000019208)	wfdc1 (ENSSTUG00000019284)	kcng4a (ENSSTUG00000019314)	ENSSTUG00000019329	HSBP1 (ENSSTUG00000019337)	ENSSTUG00000019354	mlycd (ENSSTUG00000019363)	ENSSTUG00000019371	CDH13 (ENSSTUG00000023593)
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000158841	ENSGT00390000015057.b	ENSGT01030000235114.c	ENSGT00530000063956.b.a	ENSGT00390000018698.d	ENSGT01060000248783	ENSGT00940000156704.d	ENSGT00940000166411	ENSGT00390000012498.c	ENSGT00940000157517.m.a	ENSGT00390000018220.e	ENSGT00940000155273.i.b	ENSGT00940000162251.j #12	ENSGT00390000009535	ENSGT00940000163421.a.c.p	ENSGT00530000063823.b.a.g #22	ENSGT01100000263484.B.a.a #23	ENSGT00730000111190.f #24	ENSGT00940000166375.g.a	ENSGT00390000010337.B.a.a.l	ENSGT00400000025006.d	ENSGT00940000153533.b.c	ENSGT00390000014299.e	ENSGT00940000156938.f.d	ENSGT00390000002381.b.d.a.a	ENSGT00390000006293.s.b	ENSGT00940000166270.a	ENSGT00390000005410.f	ENSGT00940000155218.B.u.a	ENSGT00530000064134.a.a	ENSGT00960000187150
Rainbow trout	MODERN SPECIES		vps9d1 (ENSOMYG00000033913)	si:dkey-238o13.4 (ENSOMYG00000033970)	ENSOMYG00000033981	pdf (ENSOMYG00000034003)	ENSOMYG00000034038	tat (ENSOMYG00000034119)	zgc:56622 (ENSOMYG00000034660)	ENSOMYG00000060326	cotl1 (ENSOMYG00000034725)	plcg2 (ENSOMYG00000034841)	ENSOMYG00000035732	ENSOMYG00000035909	foxl1 (ENSOMYG00000035920) #12	kiaa0513 (ENSOMYG00000035940)	ENSOMYG00000070951	zfpm1 (ENSOMYG00000035972) #22	trhr2 (ENSOMYG00000035991) #23	zc3h18 (ENSOMYG00000036010) #24	ENSOMYG00000065717	il17c1 (ENSOMYG00000036039)	has3 (ENSOMYG00000036047)	chtf8 (ENSOMYG00000036062)	UTP4 (ENSOMYG00000036113)	wfdc1 (ENSOMYG00000036223)	ENSOMYG00000036233	ENSOMYG00000036241	ENSOMYG00000036248	mlycd (ENSOMYG00000012161)	ENSOMYG00000012199	si:ch211-216l23.2 (ENSOMYG00000012305)	znf423 (ENSOMYG00000012329)
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000158841	ENSGT00390000015057.b	ENSGT01030000235114.c	ENSGT00530000063956.b.a	ENSGT00390000018698.d	ENSGT01060000248783	ENSGT00940000156704.d	ENSGT00940000166411	ENSGT00390000012498.c	ENSGT00940000157517.m.a	ENSGT00390000018220.e	ENSGT00940000155273.i.b	ENSGT00940000162251.j #12	ENSGT00390000009535	ENSGT00940000163421.a.c.p	ENSGT00530000063823.b.a.g #22	ENSGT01100000263484.B.a.a #23	ENSGT00730000111190.f #24	ENSGT00940000166375.g.a	ENSGT00390000010337.B.a.a.l	ENSGT00990000211668	ENSGT00940000153533.b.c	ENSGT00390000014299.e	ENSGT00940000156938.f.d	ENSGT00390000002381.b.d.a.a	ENSGT00390000006293.s.b	ENSGT00940000166270.a	ENSGT00390000005410.f	ENSGT00940000155218.B.u.a	ENSGT00530000064134.a.a	ENSGT00960000187150
Chinook salmon	MODERN SPECIES	30	znf276 (ENSOTSG00005042348)	vps9d1 (ENSOTSG00005042354)	si:dkey-238o13.4 (ENSOTSG00005042369)	ENSOTSG00005042370	ENSOTSG00005042371	ENSOTSG00005042372	tat (ENSOTSG00005042376)	zgc:56622 (ENSOTSG00005042392)	cotl1 (ENSOTSG00005042400)	plcg2 (ENSOTSG00005042409)	CMIP (ENSOTSG00005042423)	GAN (ENSOTSG00005042429)	kiaa0513 (ENSOTSG00005042431)	foxl1 (ENSOTSG00005042434) #12	ENSOTSG00005042435	zfpm1 (ENSOTSG00005042436) #22	trhr2 (ENSOTSG00005042437) #23	zc3h18 (ENSOTSG00005042440) #24	ENSOTSG00005042446	has3 (ENSOTSG00005042447)	ENSOTSG00005042448	utp4 (ENSOTSG00005042456)	wfdc1 (ENSOTSG00005042494)	kcng4a (ENSOTSG00005042495)	CDH13 (ENSOTSG00005042499)	ENSOTSG00005042500	si:ch211-216l23.2 (ENSOTSG00005042501)	znf423 (ENSOTSG00005042504)	si:ch211-212o1.2 (ENSOTSG00005042537)	cbln1 (ENSOTSG00005042542)	n4bp1 (ENSOTSG00005042545)
Coho salmon	MODERN SPECIES	24	znf276 (ENSOKIG00005041115)	si:dkey-238o13.4 (ENSOKIG00005041136)	ENSOKIG00005041163	pdf (ENSOKIG00005041182)	ENSOKIG00005041220	tat (ENSOKIG00005041268)	zgc:56622 (ENSOKIG00005041781)	cotl1 (ENSOKIG00005041974)	plcg2 (ENSOKIG00005042051)	CMIP (ENSOKIG00005042981)	GAN (ENSOKIG00005000077)	ENSOKIG00005000109	FOXL1 (ENSOKIG00005000173) #12	kiaa0513 (ENSOKIG00005000204)	ENSOKIG00005000217	zfpm1 (ENSOKIG00005000226) #22	trhr2 (ENSOKIG00005000241) #23	zc3h18 (ENSOKIG00005000269) #24	ENSOKIG00005000309	has3 (ENSOKIG00005000318)	ENSOKIG00005000325	utp4 (ENSOKIG00005000344)	wfdc1 (ENSOKIG00005000367)	KCNG4 (ENSOKIG00005000375)	ENSOKIG00005000382	HSBP1 (ENSOKIG00005000388)	mlycd (ENSOKIG00005000395)	CDH13 (ENSOKIG00005000416)	ENSOKIG00005000438	ENSOKIG00005000444	si:ch211-216l23.2 (ENSOKIG00005000457)
Huchen	MODERN SPECIES	2473																zfpm1 (ENSHHUG00000051284) #22	ENSHHUG00000051288
Salmoninae	ANCESTRAL SPECIES	18	ENSGT00950000182832.D.a.l	ENSGT00950000182808.b.b.d	ENSGT00390000007852	ENSGT00390000015057.a	ENSGT01030000235114.d	ENSGT00390000018698.c	ENSGT00940000156704.c	ENSGT00940000157543.fb.a	ENSGT00390000012498.d	ENSGT00940000158087	ENSGT00940000157517.m.b	ENSGT00390000018220.f	ENSGT00940000155273.i.a	ENSGT00940000162251.i #12	ENSGT00940000166187	ENSGT00530000063823.b.a.h #22	ENSGT01100000263484.B.a.b #23	ENSGT00730000111190.e #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a.k	ENSGT00400000025006.c	ENSGT00940000153533.b.d	ENSGT00390000014299.f	ENSGT00940000164450.b	ENSGT00940000156938.f.c	ENSGT00390000002381.b.d.a.b	ENSGT00390000006293.s.a	ENSGT00940000166270	ENSGT00390000005410.e	ENSGT00940000155218.B.u.b
Salmoninae_a	ANCESTRAL SPECIES	13	ENSGT00950000182832.D.a.l	ENSGT00950000182808.b.b.d	ENSGT00390000007852	ENSGT00390000015057.a	ENSGT01030000235114.d	ENSGT00390000018698.c	ENSGT00940000156704.c	ENSGT00940000157543.fb.a	ENSGT00390000012498.d	ENSGT00940000158087	ENSGT00940000157517.m.b	ENSGT00390000018220.f	ENSGT00940000155273.i.a	ENSGT00940000162251.i #12	ENSGT00940000166187	ENSGT00530000063823.b.a.h #22	ENSGT01100000263484.B.a.b #23	ENSGT00730000111190.e #24	ENSGT00940000166375.g.b	ENSGT00390000010938	ENSGT00390000010337.B.a.a.k	ENSGT00400000025006.c	ENSGT00940000153533.b.d	ENSGT00390000014299.f	ENSGT00940000164450.b	ENSGT00940000156938.f.c	ENSGT00390000002381.b.d.a.b	ENSGT00390000006293.s.a	ENSGT00940000166270	ENSGT00390000005410.e	ENSGT00940000155218.B.u.b
Salmo	ANCESTRAL SPECIES	36	ENSGT00950000182808.b.b.d	ENSGT00390000007852	ENSGT00940000158841.k	ENSGT00390000015057.a	ENSGT01030000235114.d	ENSGT00390000018698.c	ENSGT00940000156704.c	ENSGT00940000157543.fb.a	ENSGT00390000012498.d	ENSGT00940000158087	ENSGT00940000157517.m.b	ENSGT00390000018220.f	ENSGT00940000155273.i.a	ENSGT00940000162251.i #12	ENSGT00940000166187	ENSGT00530000063823.b.a.h #22	ENSGT01100000263484.B.a.b #23	ENSGT00730000111190.e #24	ENSGT00940000166375.g.b	ENSGT00390000010938	ENSGT00390000010337.B.a.a.k	ENSGT00400000025006.c	ENSGT00940000153533.b.d	ENSGT00390000014299.f	ENSGT00940000164450.b	ENSGT00940000156938.f.c	ENSGT00390000002381.b.d.a.b	ENSGT00390000006293.s.a	ENSGT00940000166270	ENSGT00390000005410.e	ENSGT00940000155218.B.u.b
Atlantic salmon	MODERN SPECIES	1	znf276 (ENSSSAG00000043366)	vps9d1 (ENSSSAG00000043474)	ENSSSAG00000007588	pdf (ENSSSAG00000043597)	tat (ENSSSAG00000007115)	klhl36 (ENSSSAG00000044883)	cotl1 (ENSSSAG00000044891)	tldc1 (ENSSSAG00000044932)	plcg2 (ENSSSAG00000044956)	ENSSSAG00000045058	ENSSSAG00000045924	ENSSSAG00000085944	ENSSSAG00000108970 #12	ENSSSAG00000110381	ces3 (ENSSSAG00000046473)	zfpm1 (ENSSSAG00000047291) #22	trhr2 (ENSSSAG00000047306) #23	zc3h18 (ENSSSAG00000121415) #24	ENSSSAG00000108931	tango6 (ENSSSAG00000047325)	has3 (ENSSSAG00000086235)	chtf8 (ENSSSAG00000047412)	cirh1a (ENSSSAG00000047440)	ENSSSAG00000047581	ENSSSAG00000047600	ENSSSAG00000098771	ENSSSAG00000047621	ENSSSAG00000047633	ENSSSAG00000096713	ENSSSAG00000047702	ENSSSAG00000091440
River trout	MODERN SPECIES	37	chmp1a (ENSSTUG00000007368)	slc10a3 (ENSSTUG00000007365)	ENSSTUG00000018302	vps9d1 (ENSSTUG00000018226)	si:dkey-238o13.4 (ENSSTUG00000018209)	pdf (ENSSTUG00000018190)	tat (ENSSTUG00000018107)	cotl1 (ENSSTUG00000018061)	klhl36 (ENSSTUG00000018039)	meak7 (ENSSTUG00000018023)	ENSSTUG00000018001	CMIP (ENSSTUG00000017710)	GAN (ENSSTUG00000017650)	foxl1 (ENSSTUG00000017632) #12	ces3 (ENSSTUG00000017440)	zfpm1 (ENSSTUG00000017382) #22	trhr2 (ENSSTUG00000017368) #23	zc3h18 (ENSSTUG00000017301) #24	ENSSTUG00000017271	TANGO6 (ENSSTUG00000017199)	has3 (ENSSTUG00000017184)	chtf8 (ENSSTUG00000017177)	utp4 (ENSSTUG00000017003)	wfdc1 (ENSSTUG00000016970)	ENSSTUG00000016964	kcng4a (ENSSTUG00000016954)	ENSSTUG00000016942	HSBP1 (ENSSTUG00000016933)	ENSSTUG00000016184	mlycd (ENSSTUG00000016132)	ENSSTUG00000016119
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00950000182832.D.a.l	ENSGT00950000182808.b.b.d	ENSGT00390000007852	ENSGT00390000015057.a	ENSGT01030000235114.d	ENSGT00390000018698.c	ENSGT00940000156704.c	ENSGT00940000157543.fb.a	ENSGT00390000012498.d	ENSGT00940000158087	ENSGT00940000157517.m.b	ENSGT00390000018220.f	ENSGT00940000155273.i.a	ENSGT00940000162251.i #12	ENSGT00940000166187	ENSGT00530000063823.b.a.h #22	ENSGT01100000263484.B.a.b #23	ENSGT00730000111190.e #24	ENSGT00940000166375.g.b	ENSGT00390000010938	ENSGT00390000010337.B.a.a.k	ENSGT00400000025006.c	ENSGT00940000153533.b.d	ENSGT00390000014299.f	ENSGT00940000164450.b	ENSGT00940000156938.f.c	ENSGT00390000002381.b.d.a.b	ENSGT00390000006293.s.a	ENSGT00940000166270.b	ENSGT00390000005410.e	ENSGT00940000155218.B.u.b
Rainbow trout	MODERN SPECIES	11	vps4a (ENSOMYG00000013414)	chmp1a (ENSOMYG00000013532)	ENSOMYG00000013545	ENSOMYG00000013582	vps9d1 (ENSOMYG00000013681)	ENSOMYG00000013779	pdf (ENSOMYG00000013796)	tat (ENSOMYG00000013818)	klhl36 (ENSOMYG00000013869)	cotl1 (ENSOMYG00000013874)	meak7 (ENSOMYG00000013887)	ENSOMYG00000013932	ENSOMYG00000013997	ENSOMYG00000014038 #12	ces3 (ENSOMYG00000014114)	zfpm1 (ENSOMYG00000014525) #22	trhr2 (ENSOMYG00000014531) #23	zc3h18 (ENSOMYG00000014577) #24	ENSOMYG00000014597	TANGO6 (ENSOMYG00000014611)	has3 (ENSOMYG00000014632)	chtf8 (ENSOMYG00000052693)	UTP4 (ENSOMYG00000014661)	wfdc1 (ENSOMYG00000014783)	ENSOMYG00000014792	ENSOMYG00000074468	kcng4a (ENSOMYG00000014797)	ENSOMYG00000014805	ENSOMYG00000072865	ENSOMYG00000035277	ENSOMYG00000014815
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00950000182832.D.a.l	ENSGT00950000182808.b.b.d	ENSGT00390000007852	ENSGT00390000015057.a	ENSGT01030000235114.d	ENSGT00390000018698.c	ENSGT00940000156704.c	ENSGT00940000157543.fb.a	ENSGT00390000012498.d	ENSGT00940000158087	ENSGT00940000157517.m.b	ENSGT00390000018220.f	ENSGT00940000155273.i.a	ENSGT00940000162251.i #12	ENSGT00940000166187	ENSGT00530000063823.b.a.h #22	ENSGT01100000263484.B.a.b #23	ENSGT00730000111190.e #24	ENSGT00940000166375.g.b	ENSGT00390000010938	ENSGT00390000010337.B.a.a.k	ENSGT00400000025006.c	ENSGT00940000153533.b.d	ENSGT00390000014299.f	ENSGT00940000164450.b	ENSGT00940000156938.f.c	ENSGT00390000002381.b.d.a.b	ENSGT00390000006293.s.a	ENSGT00940000166270.b	ENSGT00390000005410.e	ENSGT00940000155218.B.u.b
Coho salmon	MODERN SPECIES	14	chmp1a (ENSOKIG00005048852)	slc10a3 (ENSOKIG00005048869)	ENSOKIG00005048887	vps9d1 (ENSOKIG00005048959)	ENSOKIG00005048999	ENSOKIG00005049006	pdf (ENSOKIG00005049009)	tat (ENSOKIG00005049024)	klhl36 (ENSOKIG00005049081)	cotl1 (ENSOKIG00005049082)	meak7 (ENSOKIG00005049085)	CMIP (ENSOKIG00005049093)	GAN (ENSOKIG00005049120)	foxl1 (ENSOKIG00005049152) #12	ces3 (ENSOKIG00005049181)	zfpm1 (ENSOKIG00005049309) #22	trhr2 (ENSOKIG00005049319) #23	zc3h18 (ENSOKIG00005049329) #24	ENSOKIG00005049337	TANGO6 (ENSOKIG00005049350)	has3 (ENSOKIG00005049366)	chtf8 (ENSOKIG00005049368)	UTP4 (ENSOKIG00005049379)	wfdc1 (ENSOKIG00005049409)	ENSOKIG00005049412	kcng4a (ENSOKIG00005049415)	ENSOKIG00005049417	hsbp1a (ENSOKIG00005049422)	ENSOKIG00005049467	MLYCD (ENSOKIG00005049599)	CDH13 (ENSOKIG00005049612)
Chinook salmon	MODERN SPECIES	10	SNTB2 (ENSOTSG00005004533)	vps4a (ENSOTSG00005004535)	chmp1a (ENSOTSG00005004537)	slc10a3 (ENSOTSG00005004538)	vps9d1 (ENSOTSG00005004540)	pdf (ENSOTSG00005004573)	tat (ENSOTSG00005004576)	klhl36 (ENSOTSG00005004643)	cotl1 (ENSOTSG00005004644)	meak7 (ENSOTSG00005004646)	plcg2 (ENSOTSG00005004648)	CMIP (ENSOTSG00005004650)	GAN (ENSOTSG00005004653)	foxl1 (ENSOTSG00005004730) #12	ces3 (ENSOTSG00005004738)	zfpm1 (ENSOTSG00005004825) #22	trhr2 (ENSOTSG00005004829) #23	zc3h18 (ENSOTSG00005004830) #24	ENSOTSG00005004837	TANGO6 (ENSOTSG00005004838)	has3 (ENSOTSG00005004841)	chtf8 (ENSOTSG00005004842)	utp4 (ENSOTSG00005004844)	wfdc1 (ENSOTSG00005004865)	ENSOTSG00005004870	KCNG4 (ENSOTSG00005004873)	ENSOTSG00005004874	hsbp1a (ENSOTSG00005004877)	ENSOTSG00005004890	mlycd (ENSOTSG00005006582)	ENSOTSG00005006583
Huchen	MODERN SPECIES	488															ces3 (ENSHHUG00000048104)	zfpm1 (ENSHHUG00000048089) #22	ENSHHUG00000048085	trhr2 (ENSHHUG00000048080) #23	zc3h18 (ENSHHUG00000048009) #24	TANGO6 (ENSHHUG00000047986)	has3 (ENSHHUG00000047948)	chtf8 (ENSHHUG00000047941)	utp4 (ENSHHUG00000047894)	wfdc1 (ENSHHUG00000047892)	ENSHHUG00000047883	kcng4a (ENSHHUG00000047878)	ENSHHUG00000047875	ENSHHUG00000047834	mlycd (ENSHHUG00000047825)
Northern pike	MODERN SPECIES	18	vps9d1 (ENSELUG00000012987)	pecr (ENSELUG00000013056)	ENSELUG00000013104	pdf (ENSELUG00000013083)	tat (ENSELUG00000013141)	zgc:56622 (ENSELUG00000013288)	klhl36 (ENSELUG00000013177)	cotl1 (ENSELUG00000013308)	meak7 (ENSELUG00000013361)	plcg2 (ENSELUG00000013508)	CMIP (ENSELUG00000013650)	foxl1 (ENSELUG00000001172) #12	kiaa0513 (ENSELUG00000013732)	ces3 (ENSELUG00000013883)	ENSELUG00000013905	zfpm1 (ENSELUG00000013952) #22	trhr2 (ENSELUG00000014316) #23	zc3h18 (ENSELUG00000014426) #24	ENSELUG00000014447	TANGO6 (ENSELUG00000014524)	has3 (ENSELUG00000014555)	chtf8 (ENSELUG00000014574)	utp4 (ENSELUG00000014598)	wfdc1 (ENSELUG00000014638)	ENSELUG00000014724	kcng4a (ENSELUG00000014741)	ENSELUG00000014782	ENSELUG00000014817	ENSELUG00000014854	mlycd (ENSELUG00000014870)	CDH13 (ENSELUG00000014967)
Acanthomorphata	ANCESTRAL SPECIES	41	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b
Euacanthomorphacea	ANCESTRAL SPECIES	30	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Pinecone sodierfish	MODERN SPECIES	20	hipk3a (ENSMMDG00005018148)	tcp11l1 (ENSMMDG00005018161)	pth1a (ENSMMDG00005018364)	btbd10a (ENSMMDG00005018367)	bmal1a (ENSMMDG00005018404)	PPFIBP2 (ENSMMDG00005019709)	sb:cb470 (ENSMMDG00005020159)	poglut3 (ENSMMDG00005020161)	cyb5r2 (ENSMMDG00005020163)	CMIP (ENSMMDG00005020168)	GAN (ENSMMDG00005020176)	ENSMMDG00005020207	foxl1 (ENSMMDG00005020210) #12	kiaa0513 (ENSMMDG00005020217)	ces3 (ENSMMDG00005020251)	zfpm1 (ENSMMDG00005020257) #22	trhr2 (ENSMMDG00005020258) #23	zc3h18 (ENSMMDG00005020262) #24	ENSMMDG00005020265	TANGO6 (ENSMMDG00005020271)	has3 (ENSMMDG00005020283)	chtf8 (ENSMMDG00005020288)	utp4 (ENSMMDG00005020297)	cry2 (ENSMMDG00005020327)	ENSMMDG00005020950	cstpp1 (ENSMMDG00005020952)	ckap5 (ENSMMDG00005020972)	DBX1 (ENSMMDG00005021117)	ENSMMDG00005021119	dnaaf4 (ENSMMDG00005021122)	anpepb.1 (ENSMMDG00005021130)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Tiger tail seahorse	MODERN SPECIES	272	galnt18a (ENSHCOG00000016354)	slc12a3 (ENSHCOG00000016278)	gins3 (ENSHCOG00000015091)	mcl1b (ENSHCOG00000015084)	znrf1 (ENSHCOG00000015069)	ldhd (ENSHCOG00000015053)	ENSHCOG00000015018	arpin (ENSHCOG00000014984)	anpeplb (ENSHCOG00000014979)	si:dkey-12e7.1 (ENSHCOG00000014972)	chka (ENSHCOG00000014969)	cetp (ENSHCOG00000014944)	herpud1 (ENSHCOG00000014936)	kiaa0513 (ENSHCOG00000014931)	ENSHCOG00000014906	zfpm1 (ENSHCOG00000014898) #22	trhr2 (ENSHCOG00000014868) #23	zc3h18 (ENSHCOG00000014856) #24	ENSHCOG00000014817	utp4 (ENSHCOG00000014802)	chtf8 (ENSHCOG00000014745)	has3 (ENSHCOG00000014730)	TANGO6 (ENSHCOG00000014682)	cry2 (ENSHCOG00000014642)	ENSHCOG00000014620	ENSHCOG00000014606	cstpp1 (ENSHCOG00000014591)	ckap5 (ENSHCOG00000014584)	DBX1 (ENSHCOG00000014526)	dnaaf4 (ENSHCOG00000014495)	anpepb.1 (ENSHCOG00000014391)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000155883.a.b.a.a	ENSGT00940000155883.a.a	ENSGT00940000158063	ENSGT00940000163301.d.a.a.c.a	ENSGT00940000163301.d.a.a.c.b	ENSGT00940000177147	ENSGT00940000163301.d.a.a.d	ENSGT01050000244866.C	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00390000012935	ENSGT00940000157089.A	ENSGT00940000159073	ENSGT01050000245029	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00500000044916	ENSGT00940000153348.A	ENSGT00940000157335	ENSGT00940000156356	ENSGT00950000183151.a.a.b.b	ENSGT00940000168336	ENSGT00530000063553.b.b	ENSGT00940000154837	ENSGT00940000158682	ENSGT00940000159811	ENSGT00940000163703.b	ENSGT00940000158492
Aplocheiloidei	ANCESTRAL SPECIES	118					ENSGT00940000159073	ENSGT01050000245029	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00500000044916	ENSGT00940000153348.A	ENSGT00940000157335	ENSGT00940000156356	ENSGT00950000183151.a.a.b.b	ENSGT00940000168336	ENSGT00530000063553.b.b	ENSGT00940000154837	ENSGT00940000158682
Mangrove rivulus	MODERN SPECIES	684																zfpm1 (ENSKMAG00000000907) #22
Turquoise killifish	MODERN SPECIES	1622	ENSNFUG00015011494	ENSNFUG00015011469	gnmt (ENSNFUG00015011461)	ENSNFUG00015011452	TANGO6 (ENSNFUG00015011441)	has3 (ENSNFUG00015022475)	CHTF8 (ENSNFUG00015022474)	utp4 (ENSNFUG00015022455)	CMIP (ENSNFUG00015022438)	GAN (ENSNFUG00015022427)	ACD (ENSNFUG00015022424)	foxl1 (ENSNFUG00015022423) #12	KIAA0513 (ENSNFUG00015022416)	ENSNFUG00015022411	SMAD3 (ENSNFUG00015022410)	zfpm1 (ENSNFUG00015022409) #22	trhr2 (ENSNFUG00015022408) #23	zc3h18 (ENSNFUG00015022407) #24	ENSNFUG00015022406	psme3ip1 (ENSNFUG00015022405)	EXOSC6 (ENSNFUG00015022404)	AARS (ENSNFUG00015022393)	st3gal2 (ENSNFUG00015022391)	SF3B3 (ENSNFUG00015022368)	il34 (ENSNFUG00015022360)	lonp2 (ENSNFUG00015022348)	siah1 (ENSNFUG00015022333)	N4BP1 (ENSNFUG00015022326)	CNOT1 (ENSNFUG00015022269)	Nfu_g_1_008338 (ENSNFUG00015022244)	znf423 (ENSNFUG00015022199)
Cyprinodontoidei	ANCESTRAL SPECIES	47	ENSGT00390000014757	ENSGT00390000012935	ENSGT00940000157089.A	ENSGT00940000159073	ENSGT01050000245029	ENSGT00940000154837	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00500000044916	ENSGT00390000004877	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00390000014757	ENSGT00390000012935	ENSGT00940000157089.A	ENSGT00940000159073	ENSGT01050000245029	ENSGT00940000154837	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00500000044916	ENSGT00390000004877	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000158682	ENSGT00940000159811	ENSGT00940000163703.b	ENSGT00940000158492
Poecilia	ANCESTRAL SPECIES	39	ENSGT00950000183093.B.a.a	ENSGT00390000014757	ENSGT00390000012935	ENSGT00940000157089.A	ENSGT00940000159073	ENSGT00940000154837	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187.o	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00500000044916	ENSGT00390000004877	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000158682	ENSGT00940000159811	ENSGT00940000163703.b	ENSGT00940000158492
Guppy	MODERN SPECIES	458	ckap5 (ENSPREG00000019911)	cstpp1 (ENSPREG00000019884)	mapk8ip1a (ENSPREG00000019855)	cry2 (ENSPREG00000019837)	siah1 (ENSPREG00000019816)	lonp2 (ENSPREG00000019787)	il34 (ENSPREG00000019768)	sf3b3 (ENSPREG00000019669)	st3gal2 (ENSPREG00000019603)	aars1 (ENSPREG00000019562)	exosc6 (ENSPREG00000019548)	foxl1 (ENSPREG00000019542) #12	kiaa0513 (ENSPREG00000019529)	ENSPREG00000019506	ENSPREG00000019492	zfpm1 (ENSPREG00000019479) #22	trhr2 (ENSPREG00000019353) #23	zc3h18 (ENSPREG00000019303) #24	ENSPREG00000019288	psme3ip1 (ENSPREG00000019274)	ENSPREG00000019268	GAN (ENSPREG00000019243)	CMIP (ENSPREG00000019189)	utp4 (ENSPREG00000019070)	chtf8 (ENSPREG00000019045)	has3 (ENSPREG00000019033)	TANGO6 (ENSPREG00000018987)	n4bp1 (ENSPREG00000018960)	cbln1 (ENSPREG00000018926)	si:ch211-212o1.2 (ENSPREG00000018906)	znf423 (ENSPREG00000018878)
NAME_6	ANCESTRAL SPECIES	29	ENSGT00390000014757.z	ENSGT00390000014757.y	ENSGT00390000012935	ENSGT00940000157089.A	ENSGT00940000159073	ENSGT00940000154837	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187.o	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00940000168053	ENSGT00940000170707	ENSGT00500000044916	ENSGT00390000004877	ENSGT00940000155273	ENSGT00390000018220	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000158682	ENSGT00940000159811	ENSGT00940000163703.b	ENSGT00940000158492
Sailfin molly	MODERN SPECIES	184						siah1 (ENSPLAG00000000588)	lonp2 (ENSPLAG00000014407)	il34 (ENSPLAG00000014364)	sf3b3 (ENSPLAG00000014330)	st3gal2 (ENSPLAG00000014247)	aars1 (ENSPLAG00000014226)	exosc6 (ENSPLAG00000014150)	foxl1 (ENSPLAG00000014145) #12	kiaa0513 (ENSPLAG00000014132)	ENSPLAG00000014084	zfpm1 (ENSPLAG00000013968) #22
Amazon molly	DUPLICATION
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	459	cstpp1 (ENSPFOG00000015125)	mapk8ip1a (ENSPFOG00000015129)	cry2 (ENSPFOG00000015153)	siah1 (ENSPFOG00000015278)	lonp2 (ENSPFOG00000015295)	il34 (ENSPFOG00000015458)	sf3b3 (ENSPFOG00000015516)	st3gal2 (ENSPFOG00000015679)	aars1 (ENSPFOG00000015763)	exosc6 (ENSPFOG00000015869)	foxl1 (ENSPFOG00000023339) #12	kiaa0513 (ENSPFOG00000015879)	ENSPFOG00000015926	ENSPFOG00000023224	zfpm1 (ENSPFOG00000022969) #22	zfpm1 (ENSPFOG00000016095) #22
Amazon molly	MODERN SPECIES	459	ckap5 (ENSPFOG00000014769)	cstpp1 (ENSPFOG00000015125)	mapk8ip1a (ENSPFOG00000015129)	cry2 (ENSPFOG00000015153)	siah1 (ENSPFOG00000015278)	lonp2 (ENSPFOG00000015295)	il34 (ENSPFOG00000015458)	sf3b3 (ENSPFOG00000015516)	st3gal2 (ENSPFOG00000015679)	aars1 (ENSPFOG00000015763)	exosc6 (ENSPFOG00000015869)	foxl1 (ENSPFOG00000023339) #12	kiaa0513 (ENSPFOG00000015879)	ENSPFOG00000015926	ENSPFOG00000023224	zfpm1 (ENSPFOG00000022969) #22	zfpm1 (ENSPFOG00000016095) #22
Amazon molly	MODERN SPECIES	759																zfpm1 (ENSPFOG00000003034) #22	trhr2 (ENSPFOG00000002930) #23	ENSPFOG00000002632	ENSPFOG00000022943	psme3ip1 (ENSPFOG00000002555)	ENSPFOG00000002549	GAN (ENSPFOG00000002391)	CMIP (ENSPFOG00000001857)	utp4 (ENSPFOG00000001510)	chtf8 (ENSPFOG00000001378)	has3 (ENSPFOG00000001327)	TANGO6 (ENSPFOG00000001019)
Platyfish	MODERN SPECIES	11	cstpp1 (ENSXMAG00000006426)	mapk8ip1a (ENSXMAG00000006418)	cry2 (ENSXMAG00000006417)	ENSXMAG00000026648	siah1 (ENSXMAG00000023362)	ENSXMAG00000023005	lonp2 (ENSXMAG00000006374)	il34 (ENSXMAG00000006373)	sf3b3 (ENSXMAG00000006334)	st3gal2 (ENSXMAG00000006324)	aars1 (ENSXMAG00000006282)	exosc6 (ENSXMAG00000006280)	foxl1 (ENSXMAG00000024110) #12	kiaa0513 (ENSXMAG00000006268)	ces3 (ENSXMAG00000006261)	zfpm1 (ENSXMAG00000009855) #22	trhr2 (ENSXMAG00000006255) #23	zc3h18 (ENSXMAG00000006239) #24	ENSXMAG00000006238	psme3ip1 (ENSXMAG00000006232)	ENSXMAG00000006231	GAN (ENSXMAG00000006216)	ENSXMAG00000029832	CMIP (ENSXMAG00000006193)	utp4 (ENSXMAG00000006171)	chtf8 (ENSXMAG00000006168)	has3 (ENSXMAG00000006159)	TANGO6 (ENSXMAG00000006148)	n4bp1 (ENSXMAG00000006141)	cbln1 (ENSXMAG00000022295)	si:ch211-212o1.2 (ENSXMAG00000027907)
NAME_4	ANCESTRAL SPECIES	30	ENSGT00390000014757	ENSGT00390000012935	ENSGT00940000157089.A	ENSGT00940000159073	ENSGT01050000245029	ENSGT00940000154837	ENSGT00530000063553.b.b	ENSGT00940000168336	ENSGT00950000183151.a.a.b.b	ENSGT00940000156356	ENSGT00940000157335	ENSGT00940000153348.A	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00500000044916	ENSGT00390000004877	ENSGT00390000018220	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938
Mummichog	MODERN SPECIES	795																zfpm1 (ENSFHEG00000011678) #22
Sheepshead minnow	MODERN SPECIES	553													foxl1 (ENSCVAG00000015293) #12	kiaa0513 (ENSCVAG00000015381)	ces3 (ENSCVAG00000015396)	zfpm1 (ENSCVAG00000015402) #22	ENSCVAG00000015416	trhr2 (ENSCVAG00000015804) #23	zc3h18 (ENSCVAG00000015873) #24	ENSCVAG00000015894	psme3ip1 (ENSCVAG00000015911)	ENSCVAG00000015931	GAN (ENSCVAG00000015966)	ENSCVAG00000016014	utp4 (ENSCVAG00000016030)	chtf8 (ENSCVAG00000016040)	has3 (ENSCVAG00000016139)	TANGO6 (ENSCVAG00000016196)
Oryzias	ANCESTRAL SPECIES	35	ENSGT00940000155883.a.b.a.a	ENSGT00390000018132	ENSGT00940000153528.a.a	ENSGT00940000158063	ENSGT00940000163301.d.a.a.c.a	ENSGT00940000163301.d.a.a.c.b.a	ENSGT00940000163301.d.a.a.c.b.b.a	ENSGT01050000244866.C	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT01050000245073.A	ENSGT00530000063823.b.a #22	ENSGT01050000245073.C	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT01050000246145	ENSGT00530000064134.a.a	ENSGT00940000163250.A.b	ENSGT00940000159483.a.a	ENSGT00980000201244	ENSGT00520000055620.B	ENSGT00940000162591	ENSGT00390000016223	ENSGT00940000160394.b	ENSGT00390000007640.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000153528.a.a	ENSGT00940000158063	ENSGT00940000163301.d.a.a.c.a	ENSGT00940000163301.d.a.a.c.b.a	ENSGT00940000163301.d.a.a.c.b.b.a	ENSGT00940000163301.d.a.a.c.b.b.b.a	ENSGT00940000163301.d.a.a.c.b.b.b.b	ENSGT01050000244866.C	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT01050000245073.A	ENSGT00530000063823.b.a #22	ENSGT01050000245073.C	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT01050000246145	ENSGT00530000064134.a.a	ENSGT00940000163250.A.b	ENSGT00940000159483.a.a	ENSGT00980000201244	ENSGT00520000055620.B	ENSGT00940000162591	ENSGT00390000016223	ENSGT00940000160394.b	ENSGT00390000007640.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b
Indian medaka	MODERN SPECIES	15	ENSOMEG00000015441	ENSOMEG00000015594	ENSOMEG00000015687	ENSOMEG00000015785	CMIP (ENSOMEG00000015849)	GAN (ENSOMEG00000015902)	ENSOMEG00000015918	ENSOMEG00000015933	foxl1 (ENSOMEG00000015942) #12	kiaa0513 (ENSOMEG00000016070)	ces3 (ENSOMEG00000016127)	ENSOMEG00000016133	ENSOMEG00000016165	ENSOMEG00000016177	ENSOMEG00000016185	zfpm1 (ENSOMEG00000016199) #22	ENSOMEG00000016219	ENSOMEG00000016227	trhr2 (ENSOMEG00000016254) #23	zc3h18 (ENSOMEG00000016281) #24	ENSOMEG00000000689	ENSOMEG00000016317	ENSOMEG00000016331	IRX5 (ENSOMEG00000016355)	ENSOMEG00000016388	rpgrip1l (ENSOMEG00000016490)	NOX5 (ENSOMEG00000016523)	ambra1b (ENSOMEG00000016619)	ENSOMEG00000016654	mdkb (ENSOMEG00000016668)	DGKZ (ENSOMEG00000016895)
Javanese ricefish	MODERN SPECIES	20	cbfb (ENSOJAG00000005661)	phaf1 (ENSOJAG00000005851)	hsf4 (ENSOJAG00000005982)	ENSOJAG00000006060	ENSOJAG00000006224	ENSOJAG00000006373	ENSOJAG00000006825	ENSOJAG00000006833	ENSOJAG00000006855	GAN (ENSOJAG00000007196)	ENSOJAG00000007285	FOXL1 (ENSOJAG00000007306) #12	kiaa0513 (ENSOJAG00000007339)	ces3 (ENSOJAG00000007469)	ENSOJAG00000007497	zfpm1 (ENSOJAG00000007589) #22	ENSOJAG00000007599	vps8 (ENSOJAG00000007858)	ENSOJAG00000011327	trhr2 (ENSOJAG00000011348) #23	zc3h18 (ENSOJAG00000011374) #24	ENSOJAG00000011391	ENSOJAG00000011401	ENSOJAG00000011414	IRX5 (ENSOJAG00000011451)	rpgrip1l (ENSOJAG00000011523)	ambra1b (ENSOJAG00000011582)	ENSOJAG00000011627	mdkb (ENSOJAG00000011708)	DGKZ (ENSOJAG00000011775)	PHF21A (ENSOJAG00000013172)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00390000014869	ENSGT00940000155883.a.b.a.a	ENSGT00390000018132	ENSGT00940000153528.a.a	ENSGT00940000158063	ENSGT00940000163301.d.a.a.c.b.a	ENSGT00940000163301.d.a.a.c.b.b.a	ENSGT01050000244866.C	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT01050000245073.A	ENSGT00530000063823.b.a #22	ENSGT01050000245073.C	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT01050000246145	ENSGT00530000064134.a.a	ENSGT00940000163250.A.b	ENSGT00940000159483.a.a	ENSGT00520000055620.B	ENSGT00940000162591	ENSGT00390000016223	ENSGT00940000160394.b	ENSGT00390000007640.b.b	ENSGT00940000156152.e.a.b	ENSGT00940000156124.c.b	ENSGT00730000111696.b
Chinese medaka	MODERN SPECIES	123	ENSOSIG00000018913	ENSOSIG00000018916	cbfb (ENSOSIG00000018930)	phaf1 (ENSOSIG00000018944)	hsf4 (ENSOSIG00000018975)	ENSOSIG00000018988	ENSOSIG00000019024	ENSOSIG00000019129	CMIP (ENSOSIG00000019211)	GAN (ENSOSIG00000019438)	ENSOSIG00000019448	foxl1 (ENSOSIG00000019451) #12	kiaa0513 (ENSOSIG00000019459)	ces3 (ENSOSIG00000019474)	ENSOSIG00000019539	zfpm1 (ENSOSIG00000019542) #22
Japanese Medaka HdrR	MODERN SPECIES	20	ENSORLG00000013837	hsf4 (ENSORLG00000013768)	ENSORLG00000023654	ENSORLG00000027041	ENSORLG00000019947	ENSORLG00000013811	ENSORLG00000013826	CMIP (ENSORLG00000013857)	GAN (ENSORLG00000013876)	ENSORLG00000027472	kiaa0513 (ENSORLG00000013904)	foxl1 (ENSORLG00000013881) #12	ENSORLG00000027132	ces3 (ENSORLG00000013947)	fcg2 (ENSORLG00000013975)	zfpm1 (ENSORLG00000026867) #22	ENSORLG00000014006	ENSORLG00000014017	trhr2 (ENSORLG00000014025) #23	zc3h18 (ENSORLG00000014056) #24	il17c (ENSORLG00000023466)	ENSORLG00000029430	ENSORLG00000028664	ENSORLG00000028919	rpgrip1l (ENSORLG00000014081)	NOX5 (ENSORLG00000014089)	ambra1b (ENSORLG00000014123)	ENSORLG00000014138	mdkb (ENSORLG00000014169)	DGKZ (ENSORLG00000014238)	PHF21A (ENSORLG00000014276)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Pomacentridae	ANCESTRAL SPECIES	43	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00940000165840	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b.f	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938.h	ENSGT00500000045734	ENSGT00390000010938.g	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930
Pomacentridae_A	ANCESTRAL SPECIES	56	ENSGT00940000158841	ENSGT00390000015057	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517.l	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b.f	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938.h	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Amphiprion	ANCESTRAL SPECIES	73	ENSGT00390000015057	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517.l	ENSGT00940000165840	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b.f.a	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938.h	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a.f
Orange clownfish	MODERN SPECIES	18	pdf (ENSAPEG00000006258)	ENSAPEG00000006244	tat (ENSAPEG00000006198)	zgc:56622 (ENSAPEG00000006173)	klhl36 (ENSAPEG00000006132)	cotl1 (ENSAPEG00000006109)	meak7 (ENSAPEG00000006095)	plcg2 (ENSAPEG00000006014)	ENSAPEG00000005949	ENSAPEG00000005936	GAN (ENSAPEG00000005883)	ENSAPEG00000005862	foxl1 (ENSAPEG00000005843) #12	kiaa0513 (ENSAPEG00000005757)	ces3 (ENSAPEG00000005688)	zfpm1 (ENSAPEG00000005596) #22	trhr2 (ENSAPEG00000005509) #23	zc3h18 (ENSAPEG00000005491) #24	ENSAPEG00000005471	ENSAPEG00000005439	utp4 (ENSAPEG00000005422)	chtf8 (ENSAPEG00000005370)	has3 (ENSAPEG00000005332)	TANGO6 (ENSAPEG00000005303)	ENSAPEG00000005212	cry2 (ENSAPEG00000005191)	mapk8ip1a (ENSAPEG00000005130)	cstpp1 (ENSAPEG00000005114)	ckap5 (ENSAPEG00000004975)	DBX1 (ENSAPEG00000004947)	dnaaf4 (ENSAPEG00000004883)
Clown anemonefish	MODERN SPECIES	818																zfpm1 (ENSAOCG00000013327) #22	trhr2 (ENSAOCG00000013375) #23	zc3h18 (ENSAOCG00000013423) #24	ENSAOCG00000013453
Spiny chromis	MODERN SPECIES	1662																zfpm1 (ENSAPOG00000008684) #22
Bicolor damselfish	MODERN SPECIES	1987																zfpm1 (ENSSPAG00000020928) #22
Cichlidae	ANCESTRAL SPECIES	34	ENSGT00530000063956.b.a	ENSGT01030000234925	ENSGT00390000015057	ENSGT00940000178458	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01040000240400.c.a.b.a.b.a.a.b.b	ENSGT00550000074844	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT00940000177178	ENSGT00940000169557	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	24	ENSGT00530000063956.b.a	ENSGT01030000234925	ENSGT00390000015057	ENSGT00940000178458	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01040000240400.c.a.a	ENSGT00550000074844	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a	ENSGT00940000155997.lb.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	30	ENSGT00530000063956.b.a	ENSGT01030000234925	ENSGT00390000015057	ENSGT00940000178458	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01040000240400.c.a.a	ENSGT00550000074844	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a	ENSGT00940000155997.lb.b
Haplochromini	ANCESTRAL SPECIES	27	ENSGT00390000015057	ENSGT00940000178458	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT01030000234550.a.a.d.a.a.g	ENSGT01030000234550.a.a.d.a.a.h	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01040000240400.c.a.a	ENSGT00550000074844	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a	ENSGT00940000155997.lb.b	ENSGT00940000157572.a.b
Haplochromini_A	ANCESTRAL SPECIES	25	ENSGT00390000015057	ENSGT00940000178458	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT01030000234550.a.a.d.a.a.g	ENSGT01030000234550.a.a.d.a.a.h	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01040000240400.c.a.a	ENSGT00550000074844	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a	ENSGT00940000157572.a.b
Haplochromini_B	ANCESTRAL SPECIES	30	ENSGT00390000015057	ENSGT00940000178458	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT01030000234550.a.a.d.a.a.g	ENSGT01030000234550.a.a.d.a.a.h	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01040000240400.c.a.a	ENSGT00550000074844	ENSGT00940000160892	ENSGT01030000234858	ENSGT01030000234588.b.b.b.b.a.a.a	ENSGT01030000234588.b.b.b.b.a.a.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.a	ENSGT01030000234588.b.b.b.b.a.b.a.c.a.b.b	ENSGT01030000234588.b.b.b.b.a.b.a.c.b	ENSGT00940000177178	ENSGT00940000153901.a.b.b	ENSGT00940000167812	ENSGT00940000158477.a.b	ENSGT00950000182959.b.b.e.a	ENSGT00940000157572.a.b
Eastern happy	MODERN SPECIES	19	klhl36 (ENSACLG00000000630)	cotl1 (ENSACLG00000000664)	meak7 (ENSACLG00000000686)	plcg2 (ENSACLG00000000692)	CMIP (ENSACLG00000000732)	GAN (ENSACLG00000000819)	ENSACLG00000000869	foxl1 (ENSACLG00000000884) #12	kiaa0513 (ENSACLG00000000993)	slc13a1 (ENSACLG00000001095)	ENSACLG00000001131	ENSACLG00000001165	ENSACLG00000001172	ENSACLG00000001179	ces3 (ENSACLG00000001188)	zfpm1 (ENSACLG00000001201) #22	ENSACLG00000001259	dldh (ENSACLG00000001270)	SYT8 (ENSACLG00000001358)	ENSACLG00000001500	tnni2a.1 (ENSACLG00000001530)	ENSACLG00000001555	ENSACLG00000001563	tnni2a.2 (ENSACLG00000001585)	TNNI2 (ENSACLG00000001597)	ENSACLG00000001643	TNNI2 (ENSACLG00000001689)	TNNI2 (ENSACLG00000001715)	ENSACLG00000001721	tnnt3a (ENSACLG00000001727)	myod1 (ENSACLG00000001809)
Zebra mbuna	MODERN SPECIES	1110	zgc:56622 (ENSMZEG00005000274)	klhl36 (ENSMZEG00005000205)	cotl1 (ENSMZEG00005000167)	meak7 (ENSMZEG00005000154)	ENSMZEG00005000142	plcg2 (ENSMZEG00005000123)	CMIP (ENSMZEG00005016284)	GAN (ENSMZEG00005016250)	ENSMZEG00005016243	foxl1 (ENSMZEG00005016238) #12	kiaa0513 (ENSMZEG00005016224)	slc13a1 (ENSMZEG00005016213)	ENSMZEG00005016206	slc13a1 (ENSMZEG00005016201)	ces3 (ENSMZEG00005016193)	zfpm1 (ENSMZEG00005016182) #22	ENSMZEG00005016163	dldh (ENSMZEG00005016147)	SYT8 (ENSMZEG00005016137)	ENSMZEG00005016129	tnni2a.1 (ENSMZEG00005016126)	tnni2a.2 (ENSMZEG00005016116)	TNNI2 (ENSMZEG00005016110)	TNNI2 (ENSMZEG00005016101)	TNNI2 (ENSMZEG00005016090)	TNNI2 (ENSMZEG00005016082)	TNNI2 (ENSMZEG00005016076)	TNNI2 (ENSMZEG00005016067)	ENSMZEG00005016060	ENSMZEG00005016057	ENSMZEG00005016053
P. nyererei	MODERN SPECIES	513	ENSPNYG00000007483	ENSPNYG00000007475	klhl36 (ENSPNYG00000007440)	zgc:56622 (ENSPNYG00000007404)	cotl1 (ENSPNYG00000007376)	meak7 (ENSPNYG00000007362)	plcg2 (ENSPNYG00000007118)	CMIP (ENSPNYG00000007031)	GAN (ENSPNYG00000006972)	ENSPNYG00000006954	foxl1 (ENSPNYG00000006944) #12	kiaa0513 (ENSPNYG00000006902)	slc13a1 (ENSPNYG00000006849)	slc13a1 (ENSPNYG00000006774)	ces3 (ENSPNYG00000006596)	zfpm1 (ENSPNYG00000006516) #22	ENSPNYG00000006500
Burton s mouthbrooder	MODERN SPECIES	495	vps9d1 (ENSHBUG00000018818)	ENSHBUG00000018797	zgc:56622 (ENSHBUG00000018768)	klhl36 (ENSHBUG00000018751)	cotl1 (ENSHBUG00000018725)	meak7 (ENSHBUG00000018703)	plcg2 (ENSHBUG00000018683)	CMIP (ENSHBUG00000018662)	GAN (ENSHBUG00000018554)	ENSHBUG00000018507	foxl1 (ENSHBUG00000018482) #12	kiaa0513 (ENSHBUG00000018454)	slc13a1 (ENSHBUG00000000540)	ENSHBUG00000018337	ces3 (ENSHBUG00000018302)	zfpm1 (ENSHBUG00000018289) #22	ENSHBUG00000018231
Lyretail cichlid	MODERN SPECIES	429																zfpm1 (ENSNBRG00000000569) #22	ENSNBRG00000000542	dldh (ENSNBRG00000000346)	SYT8 (ENSNBRG00000000324)	ENSNBRG00000000308	tnni2a.2 (ENSNBRG00000000291)	ENSNBRG00000000285	TNNI2 (ENSNBRG00000000275)	ENSNBRG00000000267	ENSNBRG00000000262	ENSNBRG00000022480	tnnt3a (ENSNBRG00000022442)	myod1 (ENSNBRG00000022428)	ENSNBRG00000022414	ENSNBRG00000022400	urahb (ENSNBRG00000022377)
Nile tilapia	MODERN SPECIES	19	ENSONIG00000010702	ENSONIG00000032071	vps9d1 (ENSONIG00000010706)	zgc:56622 (ENSONIG00000010709)	klhl36 (ENSONIG00000010716)	plcg2 (ENSONIG00000010726)	meak7 (ENSONIG00000010723)	CMIP (ENSONIG00000010739)	GAN (ENSONIG00000010745)	foxl1 (ENSONIG00000030034) #12	kiaa0513 (ENSONIG00000010750)	slc13a1 (ENSONIG00000010754)	ENSONIG00000041520	ENSONIG00000034024	ENSONIG00000010760	zfpm1 (ENSONIG00000035110) #22	ENSONIG00000010767	ENSONIG00000030669	ENSONIG00000028992	dldh (ENSONIG00000010769)	SYT8 (ENSONIG00000041185)	ENSONIG00000029220	tnni2a.1 (ENSONIG00000010776)	tnni2a.4 (ENSONIG00000010787)	ENSONIG00000010790	ENSONIG00000033565	ENSONIG00000028193	tnnt3a (ENSONIG00000010794)	myod1 (ENSONIG00000010796)	ENSONIG00000031210	CACNA2D4 (ENSONIG00000010799)
Midas cichlid	MODERN SPECIES	258	lsm14aa (ENSACIG00000015925)	gpia (ENSACIG00000015893)	hsd17b2 (ENSACIG00000015859)	mphosph6 (ENSACIG00000015842)	SNX20 (ENSACIG00000015829)	tph2 (ENSACIG00000015794)	tbc1d15 (ENSACIG00000015764)	ZFC3H1 (ENSACIG00000015672)	ENSACIG00000015641	ENSACIG00000015530	frs2b (ENSACIG00000015503)	nup160 (ENSACIG00000015433)	slc13a1 (ENSACIG00000015361)	ces3 (ENSACIG00000015245)	ENSACIG00000015232	zfpm1 (ENSACIG00000015211) #22	ENSACIG00000015203	ENSACIG00000015187	ENSACIG00000015131	ENSACIG00000015126	dldh (ENSACIG00000015096)	SYT8 (ENSACIG00000015081)	ENSACIG00000015057	tnni2a.1 (ENSACIG00000015042)	tnni2a.2 (ENSACIG00000014981)	TNNI2 (ENSACIG00000014860)	TNNI2 (ENSACIG00000014837)	TNNI2 (ENSACIG00000014818)	ENSACIG00000014805	ENSACIG00000014797	ENSACIG00000014781
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00530000063823.b.a #22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004811	ENSTNIG00000004812	ENSTNIG00000004824	atp1b2a (ENSTNIG00000004825)	ENSTNIG00000004827	ENSTNIG00000004828	ENSTNIG00000004829	PTGR3 (ENSTNIG00000004830)	egr2b (ENSTNIG00000004831)	ENSTNIG00000004832	adoa (ENSTNIG00000004833)	egr2b (ENSTNIG00000004834)	foxg1a (ENSTNIG00000004841)	ehd4 (ENSTNIG00000004842)	coch (ENSTNIG00000004843)	ENSTNIG00000004848 #22	trhr2 (ENSTNIG00000004849) #23	cry2 (ENSTNIG00000004850)	cry2 (ENSTNIG00000004851)	mapk8ip1a (ENSTNIG00000004852)	cstpp1 (ENSTNIG00000004853)	ckap5 (ENSTNIG00000004854)	DBX1 (ENSTNIG00000004855)	ENSTNIG00000004856	sf3b3 (ENSTNIG00000004857)	ENSTNIG00000003800	ENSTNIG00000004858	smarca4a (ENSTNIG00000004859)	ENSTNIG00000004860	ENSTNIG00000005340	ENSTNIG00000003241
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Ballan wrasse	MODERN SPECIES	6									cry2 (ENSLBEG00000007779)	CMIP (ENSLBEG00000007670)	GAN (ENSLBEG00000007542)	ENSLBEG00000007497	foxl1 (ENSLBEG00000007468) #12	kiaa0513 (ENSLBEG00000007334)	ces3 (ENSLBEG00000007304)	zfpm1 (ENSLBEG00000007278) #22	ENSLBEG00000007257	ENSLBEG00000007230	ENSLBEG00000007201	ENSLBEG00000007146	ENSLBEG00000007123	ENSLBEG00000007101	trhr2 (ENSLBEG00000007079) #23	zc3h18 (ENSLBEG00000007020) #24	ENSLBEG00000006992	utp4 (ENSLBEG00000006956)	chtf8 (ENSLBEG00000006936)	has3 (ENSLBEG00000006802)	ENSLBEG00000006704	ENSLBEG00000006665	ENSLBEG00000006598
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Eupecaria_C	ANCESTRAL SPECIES	29	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187.h	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	36	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187.h	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
European seabass	MODERN SPECIES	19	ZNF276 (ENSDLAG00005018243)	ENSDLAG00005018363	ENSDLAG00005034328	pdf (ENSDLAG00005026841)	ENSDLAG00005030188	tat (ENSDLAG00005018405)	zgc:56622 (ENSDLAG00005033989)	klhl36 (ENSDLAG00005018420)	cotl1 (ENSDLAG00005018434)	plcg2 (ENSDLAG00005018456)	ENSDLAG00005018676	ENSDLAG00005019352	ENSDLAG00005034219 #12	ENSDLAG00005019228	ENSDLAG00005019369	zfpm1 (ENSDLAG00005019395) #22	ENSDLAG00005034834	ENSDLAG00005005303	ENSDLAG00005019400	ENSDLAG00005019403 #23	zc3h18 (ENSDLAG00005019413) #24	ENSDLAG00005019452	UTP4 (ENSDLAG00005019458)	HAS3 (ENSDLAG00005019483)	TANGO6 (ENSDLAG00005019502)	ENSDLAG00005034980	CHTF8 (ENSDLAG00005028361)	ENSDLAG00005029893	cry2 (ENSDLAG00005019570)	mapk8ip1a (ENSDLAG00005030637)	cstpp1 (ENSDLAG00005019599)
Large yellow croaker	MODERN SPECIES	492	phaf1 (ENSLCRG00005023209)	cbfb (ENSLCRG00005023225)	gnao1a (ENSLCRG00005023228)	hsf4 (ENSLCRG00005023233)	ENSLCRG00005023234	st3gal2 (ENSLCRG00005023236)	aars1 (ENSLCRG00005023238)	exosc6 (ENSLCRG00005023240)	ENSLCRG00005023252	CMIP (ENSLCRG00005023322)	GAN (ENSLCRG00005023343)	ENSLCRG00005023348	foxl1 (ENSLCRG00005023350) #12	kiaa0513 (ENSLCRG00005023351)	ces3 (ENSLCRG00005023357)	zfpm1 (ENSLCRG00005023359) #22	trhr2 (ENSLCRG00005023361) #23	zc3h18 (ENSLCRG00005023362) #24	ENSLCRG00005023364	utp4 (ENSLCRG00005001377)	chtf8 (ENSLCRG00005001380)	has3 (ENSLCRG00005001383)	TANGO6 (ENSLCRG00005001387)	cry2 (ENSLCRG00005001537)	ifitm5 (ENSLCRG00005005506)	ENSLCRG00005005507	cdkn1ca (ENSLCRG00005005509)	ptdss2 (ENSLCRG00005005517)	TMEM168 (ENSLCRG00005005770)	bmt2 (ENSLCRG00005005771)	ENSLCRG00005005772
Gilthead seabream	MODERN SPECIES	22	ENSSAUG00010021799	ENSSAUG00010021800	ric8a (ENSSAUG00010021803)	ppp6r3 (ENSSAUG00010021811)	tmem170a (ENSSAUG00010021867)	COX8b (ENSSAUG00010021868)	ENSSAUG00010021870	ENSSAUG00010021872	NTRK3 (ENSSAUG00010021890)	CMIP (ENSSAUG00010022145)	GAN (ENSSAUG00010022189)	ENSSAUG00010022192	ENSSAUG00010022193	kiaa0513 (ENSSAUG00010022194)	ces3 (ENSSAUG00010022197)	zfpm1 (ENSSAUG00010022200) #22	ENSSAUG00010022201	trhr2 (ENSSAUG00010022202) #23	ENSSAUG00010022204	ENSSAUG00010022206	zc3h18 (ENSSAUG00010022208) #24	utp4 (ENSSAUG00010022210)	ENSSAUG00010022211	chtf8 (ENSSAUG00010022212)	TANGO6 (ENSSAUG00010022213)	ENSSAUG00010022215	ENSSAUG00010022217	lrp5 (ENSSAUG00010022247)	CCND1 (ENSSAUG00010023869)	zgc:158868 (ENSSAUG00010023872)	bcar1 (ENSSAUG00010023876)
Perciformes	ANCESTRAL SPECIES	28	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Cottioidei	ANCESTRAL SPECIES	32	ENSGT00390000000221.A.d	ENSGT01100000263489.a.a.b.a.a.b.a.a.b	ENSGT00940000155391.a.a	ENSGT00390000005430	ENSGT00940000153717.b.g	ENSGT00940000156672.o.a	ENSGT00940000155112.A.c	ENSGT00390000014700.b.a.a	ENSGT00390000009899.a.d	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Lumpfish	MODERN SPECIES	21	poglut3 (ENSCLMG00005005235)	ENSCLMG00005005236	ENSCLMG00005005237	ENSCLMG00005005240	ENSCLMG00005005869	ripor1 (ENSCLMG00005005870)	ctcf (ENSCLMG00005005872)	ric8a (ENSCLMG00005005890)	ppp6r3 (ENSCLMG00005005924)	CMIP (ENSCLMG00005006136)	GAN (ENSCLMG00005006232)	ENSCLMG00005006242	foxl1 (ENSCLMG00005006244) #12	kiaa0513 (ENSCLMG00005006245)	ces3 (ENSCLMG00005006249)	zfpm1 (ENSCLMG00005006630) #22	trhr2 (ENSCLMG00005006632) #23	zc3h18 (ENSCLMG00005006641) #24	ENSCLMG00005006656	utp4 (ENSCLMG00005006659)	chtf8 (ENSCLMG00005006667)	has3 (ENSCLMG00005006668)	TANGO6 (ENSCLMG00005006670)	mapk8ip1a (ENSCLMG00005006678)	cstpp1 (ENSCLMG00005006681)	ckap5 (ENSCLMG00005006695)	DBX1 (ENSCLMG00005006702)	ANPEP (ENSCLMG00005006711)	dnaaf4 (ENSCLMG00005007141)	mrps33 (ENSCLMG00005007142)	ENSCLMG00005007143
Stickleback	MODERN SPECIES	14	ENSGACG00000002487	ENSGACG00000002490	ENSGACG00000002495	ripor1 (ENSGACG00000002497)	ctcf (ENSGACG00000002504)	carmil2 (ENSGACG00000002509)	ENSGACG00000002513	ric8a (ENSGACG00000002515)	ppp6r3 (ENSGACG00000002520)	ENSGACG00000002527	ENSGACG00000002528	GAN (ENSGACG00000002529)	ENSGACG00000002537	kiaa0513 (ENSGACG00000002538)	ces3 (ENSGACG00000002541)	zfpm1 (ENSGACG00000002554) #22	trhr2 (ENSGACG00000002560) #23	ENSGACG00000002565	ENSGACG00000002568	ENSGACG00000002572	ENSGACG00000002574	ENSGACG00000002579	ENSGACG00000002580	ENSGACG00000002581	ENSGACG00000002586	ENSGACG00000002591	setd6 (ENSGACG00000002601)	cnot1 (ENSGACG00000002606)	si:ch211-216l23.2 (ENSGACG00000002623)	znf423 (ENSGACG00000002626)	n4bp1 (ENSGACG00000002633)
Perciformes_a	ANCESTRAL SPECIES	30	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Pike perch	MODERN SPECIES	67	pdf (ENSSLUG00000016810)	ENSSLUG00000016812	ENSSLUG00000016817	tat (ENSSLUG00000016843)	zgc:56622 (ENSSLUG00000017215)	klhl36 (ENSSLUG00000017253)	cotl1 (ENSSLUG00000017257)	meak7 (ENSSLUG00000017263)	plcg2 (ENSSLUG00000017308)	CMIP (ENSSLUG00000017839)	GAN (ENSSLUG00000017869)	ENSSLUG00000017902	foxl1 (ENSSLUG00000017913) #12	kiaa0513 (ENSSLUG00000017917)	ces3 (ENSSLUG00000017928)	zfpm1 (ENSSLUG00000017956) #22	trhr2 (ENSSLUG00000017968) #23
Channel bull blenny	MODERN SPECIES	20	ENSCGOG00000004674	pdf (ENSCGOG00000004673)	tat (ENSCGOG00000004669)	zgc:56622 (ENSCGOG00000004666)	klhl36 (ENSCGOG00000004662)	cotl1 (ENSCGOG00000004657)	ENSCGOG00000004654	meak7 (ENSCGOG00000004651)	plcg2 (ENSCGOG00000003710)	CMIP (ENSCGOG00000003368)	GAN (ENSCGOG00000003188)	ENSCGOG00000003175	foxl1 (ENSCGOG00000003172) #12	kiaa0513 (ENSCGOG00000003162)	ces3 (ENSCGOG00000003135)	zfpm1 (ENSCGOG00000003130) #22	trhr2 (ENSCGOG00000003126) #23	zc3h18 (ENSCGOG00000003113) #24	ENSCGOG00000003108	utp4 (ENSCGOG00000002730)	chtf8 (ENSCGOG00000002648)	has3 (ENSCGOG00000002619)	TANGO6 (ENSCGOG00000008127)	ENSCGOG00000008118	cry2 (ENSCGOG00000003563)	mapk8ip1a (ENSCGOG00000003471)	cstpp1 (ENSCGOG00000003466)	ckap5 (ENSCGOG00000003087)	ENSCGOG00000003069	dnaaf4 (ENSCGOG00000003067)	ENSCGOG00000003066
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000025342	pdf (ENSMAMG00000012648)	ENSMAMG00000012621	tat (ENSMAMG00000012593)	zgc:56622 (ENSMAMG00000012553)	klhl36 (ENSMAMG00000012516)	cotl1 (ENSMAMG00000012505)	meak7 (ENSMAMG00000012494)	plcg2 (ENSMAMG00000012362)	ENSMAMG00000012289	ENSMAMG00000012242	ENSMAMG00000012231	ENSMAMG00000012214 #12	kiaa0513 (ENSMAMG00000012203)	ces3 (ENSMAMG00000012187)	zfpm1 (ENSMAMG00000012173) #22	ENSMAMG00000012010 #23	zc3h18 (ENSMAMG00000011979) #24	ENSMAMG00000011967	UTP4 (ENSMAMG00000011957)	chtf8 (ENSMAMG00000024260)	HAS3 (ENSMAMG00000011817)	TANGO6 (ENSMAMG00000011798)	cry2 (ENSMAMG00000011756)	ENSMAMG00000011713	cstpp1 (ENSMAMG00000011696)	ckap5 (ENSMAMG00000011652)	ENSMAMG00000011633	ENSMAMG00000011543	ENSMAMG00000011489	ENSMAMG00000011461
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a	ENSGT00940000154876.a.b.b
Siamese fighting fish	MODERN SPECIES	17	ENSBSLG00000000924	ENSBSLG00000000922	pdf (ENSBSLG00000000917)	ENSBSLG00000000914	tat (ENSBSLG00000000704)	zgc:56622 (ENSBSLG00000023898)	klhl36 (ENSBSLG00000023879)	cotl1 (ENSBSLG00000023865)	meak7 (ENSBSLG00000023846)	CMIP (ENSBSLG00000023763)	GAN (ENSBSLG00000023750)	ENSBSLG00000023746	foxl1 (ENSBSLG00000023744) #12	kiaa0513 (ENSBSLG00000023723)	ces3 (ENSBSLG00000023704)	zfpm1 (ENSBSLG00000023690) #22	trhr2 (ENSBSLG00000023680) #23	zc3h18 (ENSBSLG00000023654) #24	ENSBSLG00000023646	utp4 (ENSBSLG00000023600)	chtf8 (ENSBSLG00000023582)	ENSBSLG00000023580	ENSBSLG00000023490	has3 (ENSBSLG00000023443)	TANGO6 (ENSBSLG00000023438)	cry2 (ENSBSLG00000023115)	ENSBSLG00000023045	cstpp1 (ENSBSLG00000023025)	ckap5 (ENSBSLG00000022781)	DBX1 (ENSBSLG00000022777)	anpepb.1 (ENSBSLG00000022188)
Climbing perch	MODERN SPECIES	19	ENSATEG00000006388	ENSATEG00000028101	pdf (ENSATEG00000006343)	ENSATEG00000006325	tat (ENSATEG00000006269)	zgc:56622 (ENSATEG00000006212)	klhl36 (ENSATEG00000006170)	ENSATEG00000006138	plcg2 (ENSATEG00000005977)	ENSATEG00000005849	ENSATEG00000005791	ENSATEG00000005752	ENSATEG00000005732 #12	kiaa0513 (ENSATEG00000005723)	ces3 (ENSATEG00000005709)	zfpm1 (ENSATEG00000005697) #22	ENSATEG00000005634 #23	zc3h18 (ENSATEG00000005626) #24	ENSATEG00000005620	UTP4 (ENSATEG00000005607)	chtf8 (ENSATEG00000005576)	HAS3 (ENSATEG00000030007)	TANGO6 (ENSATEG00000005557)	cry2 (ENSATEG00000005498)	ENSATEG00000026055	cstpp1 (ENSATEG00000005484)	ckap5 (ENSATEG00000005337)	ENSATEG00000005277	ENSATEG00000005200	ENSATEG00000005107	ENSATEG00000004941
Carangaria	ANCESTRAL SPECIES	6	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Carangaria_A	ANCESTRAL SPECIES		ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000165840	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Seriola	ANCESTRAL SPECIES	5	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00940000165840	ENSGT00940000155273	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Greater amberjack	MODERN SPECIES	86	pdf (ENSSDUG00000004692)	ENSSDUG00000004674	tat (ENSSDUG00000004645)	zgc:56622 (ENSSDUG00000004548)	klhl36 (ENSSDUG00000004504)	cotl1 (ENSSDUG00000004492)	meak7 (ENSSDUG00000004482)	plcg2 (ENSSDUG00000003625)	ENSSDUG00000003487	GAN (ENSSDUG00000003438)	ENSSDUG00000003429	ENSSDUG00000003414 #12	foxl1 (ENSSDUG00000003405) #12	kiaa0513 (ENSSDUG00000003366)	ces3 (ENSSDUG00000003148)	zfpm1 (ENSSDUG00000003117) #22	trhr2 (ENSSDUG00000003096) #23	zc3h18 (ENSSDUG00000003040) #24	ENSSDUG00000003024	utp4 (ENSSDUG00000002976)	chtf8 (ENSSDUG00000002954)	has3 (ENSSDUG00000002947)	TANGO6 (ENSSDUG00000002911)	ENSSDUG00000002898	ENSSDUG00000002889	cry2 (ENSSDUG00000002859)	ENSSDUG00000002816	mapk8ip1a (ENSSDUG00000002787)	cstpp1 (ENSSDUG00000002775)	ckap5 (ENSSDUG00000002666)	DBX1 (ENSSDUG00000002632)
Yellowtail amberjack	MODERN SPECIES	3283	ENSSLDG00000004357	pdf (ENSSLDG00000004374)	ENSSLDG00000004394	tat (ENSSLDG00000004421)	zgc:56622 (ENSSLDG00000004501)	klhl36 (ENSSLDG00000004548)	cotl1 (ENSSLDG00000004596)	meak7 (ENSSLDG00000004631)	plcg2 (ENSSLDG00000004667)	ENSSLDG00000004812	GAN (ENSSLDG00000004896)	ENSSLDG00000004984	foxl1 (ENSSLDG00000005001) #12	kiaa0513 (ENSSLDG00000005035)	ces3 (ENSSLDG00000005094)	zfpm1 (ENSSLDG00000005129) #22	trhr2 (ENSSLDG00000005157) #23	zc3h18 (ENSSLDG00000005204) #24	ENSSLDG00000005237	utp4 (ENSSLDG00000005258)	chtf8 (ENSSLDG00000005276)	has3 (ENSSLDG00000005307)	TANGO6 (ENSSLDG00000005411)	ENSSLDG00000005476	cry2 (ENSSLDG00000005500)	ENSSLDG00000005566	cstpp1 (ENSSLDG00000005579)	ckap5 (ENSSLDG00000005619)	DBX1 (ENSSLDG00000005717)	dnaaf4 (ENSSLDG00000005741)	anpepb.1 (ENSSLDG00000005812)
Barramundi perch	MODERN SPECIES	217	pdf (ENSLCAG00010020051)	ENSLCAG00010020054	tat (ENSLCAG00010020085)	zgc:56622 (ENSLCAG00010020188)	klhl36 (ENSLCAG00010020196)	cotl1 (ENSLCAG00010020202)	ENSLCAG00010020203	meak7 (ENSLCAG00010020206)	plcg2 (ENSLCAG00010020245)	CMIP (ENSLCAG00010020528)	GAN (ENSLCAG00010020686)	ENSLCAG00010020709	ENSLCAG00010020713	kiaa0513 (ENSLCAG00010020730)	ces3 (ENSLCAG00010020780)	zfpm1 (ENSLCAG00010020819) #22	trhr2 (ENSLCAG00010020822) #23	zc3h18 (ENSLCAG00010020827) #24	ENSLCAG00010020837	TANGO6 (ENSLCAG00010020843)	has3 (ENSLCAG00010020845)	chtf8 (ENSLCAG00010020847)	utp4 (ENSLCAG00010020852)	ENSLCAG00010020856	ENSLCAG00010020858	cry2 (ENSLCAG00010020865)	mapk8ip1a (ENSLCAG00010020873)	cstpp1 (ENSLCAG00010020877)	ckap5 (ENSLCAG00010020938)	ENSLCAG00010021018	dnaaf4 (ENSLCAG00010021023)
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT01030000234925	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248721	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000175365	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000153533.b	ENSGT00400000025006	ENSGT00390000010337.B.a.a	ENSGT00390000010938	ENSGT00500000045734	ENSGT00940000159073	ENSGT00940000157089.A	ENSGT00390000012935	ENSGT00390000014757	ENSGT00950000183093.B.a.a	ENSGT00390000004930	ENSGT00940000154876.a.b.a
Turbot	MODERN SPECIES	1	ENSSMAG00000000425	pdf (ENSSMAG00000032152)	ENSSMAG00000033560	ENSSMAG00000037292	zgc:56622 (ENSSMAG00000000410)	klhl36 (ENSSMAG00000000396)	cotl1 (ENSSMAG00000027950)	meak7 (ENSSMAG00000000386)	plcg2 (ENSSMAG00000000369)	ENSSMAG00000000282	ENSSMAG00000000265	ENSSMAG00000000259	ENSSMAG00000000254 #12	kiaa0513 (ENSSMAG00000000230)	ces3 (ENSSMAG00000000226)	zfpm1 (ENSSMAG00000018113) #22	ENSSMAG00000018100 #23	zc3h18 (ENSSMAG00000018052) #24	ENSSMAG00000025463	UTP4 (ENSSMAG00000018030)	chtf8 (ENSSMAG00000018002)	HAS3 (ENSSMAG00000017964)	TANGO6 (ENSSMAG00000017941)	ENSSMAG00000017933	cry2 (ENSSMAG00000017909)	mapk8ip1a (ENSSMAG00000017870)	cstpp1 (ENSSMAG00000017861)	ckap5 (ENSSMAG00000017758)	ENSSMAG00000017726	ENSSMAG00000017710	ENSSMAG00000017635
Tongue sole	MODERN SPECIES	16	ENSCSEG00000021811	ENSCSEG00000021812	FOXL1 (ENSCSEG00000000271) #12	ENSCSEG00000000274	GAN (ENSCSEG00000000278)	ENSCSEG00000000282	kiaa0513 (ENSCSEG00000000289)	pdf (ENSCSEG00000000294)	ENSCSEG00000000298	tat (ENSCSEG00000000303)	zgc:56622 (ENSCSEG00000000316)	klhl36 (ENSCSEG00000000325)	cotl1 (ENSCSEG00000000329)	meak7 (ENSCSEG00000000335)	plcg2 (ENSCSEG00000000340)	zfpm1 (ENSCSEG00000000359) #22	trhr2 (ENSCSEG00000000364) #23	zc3h18 (ENSCSEG00000000372) #24	ENSCSEG00000000396	TANGO6 (ENSCSEG00000000404)	has3 (ENSCSEG00000000417)	chtf8 (ENSCSEG00000000453)	utp4 (ENSCSEG00000000456)	si:dkey-12e7.1 (ENSCSEG00000000468)	chka (ENSCSEG00000000475)	cetp (ENSCSEG00000000479)	ldhd (ENSCSEG00000000485)	znrf1 (ENSCSEG00000000498)	gins3 (ENSCSEG00000000507)	ndrg4 (ENSCSEG00000000519)	ENSCSEG00000000601
Cod	MODERN SPECIES	22	ENSGMOG00000030806	ENSGMOG00000029471	pdf (ENSGMOG00000004104)	tat (ENSGMOG00000004127)	zgc:56622 (ENSGMOG00000004158)	klhl36 (ENSGMOG00000028672)	cotl1 (ENSGMOG00000004183)	meak7 (ENSGMOG00000004193)	plcg2 (ENSGMOG00000004227)	ENSGMOG00000002227	ENSGMOG00000002280	ENSGMOG00000025504	ENSGMOG00000032692 #12	kiaa0513 (ENSGMOG00000002337)	ces3 (ENSGMOG00000000154)	zfpm1 (ENSGMOG00000031027) #22	trhr2 (ENSGMOG00000015189) #23	zc3h18 (ENSGMOG00000015433) #24	ENSGMOG00000031470	TANGO6 (ENSGMOG00000014362)	has3 (ENSGMOG00000014348)	chtf8 (ENSGMOG00000005356)	UTP4 (ENSGMOG00000014309)	ENSGMOG00000014191	ENSGMOG00000017357	ENSGMOG00000001189	ENSGMOG00000022462	ENSGMOG00000009229	KLHL25 (ENSGMOG00000009219)	ENSGMOG00000009207	ENSGMOG00000030372
Otomorpha	ANCESTRAL SPECIES		ENSGT01030000235114	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.f	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B
Clupeiformes	ANCESTRAL SPECIES	71	ENSGT00530000063956.b.a	ENSGT00390000018698	ENSGT01060000248783	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000163421.a.c	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.f	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B
Atlantic herring	MODERN SPECIES	19	pdf (ENSCHAG00000023378)	ENSCHAG00000023373	tat (ENSCHAG00000022985)	zgc:56622 (ENSCHAG00000022930)	klhl36 (ENSCHAG00000022913)	cotl1 (ENSCHAG00000022902)	plcg2 (ENSCHAG00000022861)	meak7 (ENSCHAG00000022817)	ENSCHAG00000022596	CMIP (ENSCHAG00000022024)	GAN (ENSCHAG00000021880)	foxl1 (ENSCHAG00000021864) #12	kiaa0513 (ENSCHAG00000021629)	ENSCHAG00000021576	ces3 (ENSCHAG00000021517)	zfpm1 (ENSCHAG00000021509) #22	trhr2 (ENSCHAG00000021504) #23	zc3h18 (ENSCHAG00000021492) #24	ENSCHAG00000021457	gdpgp1 (ENSCHAG00000021439)	ENSCHAG00000021421	rhcgb (ENSCHAG00000021162)	POLG (ENSCHAG00000021087)	fanci (ENSCHAG00000020519)	ENSCHAG00000020499	FBXO31 (ENSCHAG00000020194) #14	ENSCHAG00000019865	dhtkd1 (ENSCHAG00000019216)	camk1db (ENSCHAG00000017326)	ucmab (ENSCHAG00000017292)	CDK17 (ENSCHAG00000016953)
Denticle herring	MODERN SPECIES	8	ENSDCDG00000024519	ENSDCDG00000024528	pdf (ENSDCDG00000024538)	ENSDCDG00000024547	tat (ENSDCDG00000024570)	zgc:56622 (ENSDCDG00000025964)	klhl36 (ENSDCDG00000026171)	cotl1 (ENSDCDG00000026172)	meak7 (ENSDCDG00000026175)	plcg2 (ENSDCDG00000026188)	CMIP (ENSDCDG00000026368)	GAN (ENSDCDG00000026838)	kiaa0513 (ENSDCDG00000026843)	ENSDCDG00000026852	ENSDCDG00000026854	zfpm1 (ENSDCDG00000026856) #22	trhr2 (ENSDCDG00000026865) #23	zc3h18 (ENSDCDG00000026957) #24	ENSDCDG00000026961	TANGO6 (ENSDCDG00000026964)	has3 (ENSDCDG00000026968)	chtf8 (ENSDCDG00000026971)	utp4 (ENSDCDG00000026978)	wfdc1 (ENSDCDG00000026983)	ENSDCDG00000026986	cpt1b (ENSDCDG00000027010)	pgghg (ENSDCDG00000027534)	ENSDCDG00000027585	PNPLA2 (ENSDCDG00000027587)	ENSDCDG00000027590	ENSDCDG00000027591
Otophysi	ANCESTRAL SPECIES	4	ENSGT00940000157894	ENSGT00500000044916	ENSGT00940000157653	ENSGT00940000160652	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b	ENSGT00940000155044.B	ENSGT00390000016353	ENSGT00950000182967	ENSGT00390000017113	ENSGT00940000162243	ENSGT00940000153528.a.a	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000166253.b	ENSGT00390000017064	ENSGT00390000012348	ENSGT00950000182999.b.a.b	ENSGT00940000157584.a.a
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00940000157894	ENSGT00500000044916	ENSGT00940000157653.u	ENSGT00940000160652	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b	ENSGT00940000155044.B	ENSGT00390000016353	ENSGT00950000182967	ENSGT00390000017113	ENSGT00940000162243	ENSGT00940000153528.a.a	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000166253.b	ENSGT00390000017064	ENSGT00390000012348	ENSGT00950000182999.b.a.b	ENSGT00940000157584.a.a
Channel catfish	MODERN SPECIES	23	Rspry1 (ENSIPUG00000020177)	fam192a (ENSIPUG00000020154)	cpne2 (ENSIPUG00000020071)	nlrc5 (ENSIPUG00000019679)	cetp (ENSIPUG00000019568)	herpud1 (ENSIPUG00000019543)	slc12a3 (ENSIPUG00000019448)	nup93 (ENSIPUG00000019319)	mt2 (ENSIPUG00000019287)	bbs2 (ENSIPUG00000019225)	B3GNT9 (ENSIPUG00000019215)	c4h16orf70 (ENSIPUG00000019168)	foxl1 (ENSIPUG00000019146) #12	kiaa0513 (ENSIPUG00000019102)	ces3 (ENSIPUG00000019075)	zfpm1 (ENSIPUG00000019070) #22	ENSIPUG00000019049	ENSIPUG00000019036	tph2 (ENSIPUG00000019013)	tbc1d15 (ENSIPUG00000018954)	chtf8 (ENSIPUG00000018926)	has3 (ENSIPUG00000018888)	tango6 (ENSIPUG00000018862)	il17c (ENSIPUG00000018845)	zc3h18 (ENSIPUG00000018811) #24	trhr2 (ENSIPUG00000018788) #23	ENSIPUG00000018785	akip1 (ENSIPUG00000018780)	znf143 (ENSIPUG00000018741)	WEE1 (ENSIPUG00000018708)	swap70b (ENSIPUG00000018649)
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000157653.u	ENSGT01100000263476.B.b.a.a.a.b	ENSGT00940000157653.v	ENSGT00940000160652	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b	ENSGT00940000155044.B	ENSGT00390000016353	ENSGT00950000182967	ENSGT00390000017113	ENSGT00940000162243	ENSGT00940000153528.a.a	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000166253.b	ENSGT00390000017064	ENSGT00390000012348	ENSGT00950000182999.b.a.b	ENSGT00940000157584.a.a
Characoidei	ANCESTRAL SPECIES	30	ENSGT00500000044916	ENSGT00940000157653.u	ENSGT01100000263476.B.b.a.a.a.b	ENSGT00940000160652	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b	ENSGT00940000155044.B	ENSGT00390000016353	ENSGT00950000182967	ENSGT00390000017113	ENSGT00940000162243	ENSGT00940000153528.a.a	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000170707	ENSGT00940000166375	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000166253.b	ENSGT00390000017064	ENSGT00390000012348	ENSGT00950000182999.b.a.b	ENSGT00940000157584.a.a
Red-bellied piranha	MODERN SPECIES		si:ch211-216l23.2 (ENSPNAG00000015729)	rspry1 (ENSPNAG00000015819)	psme3ip1 (ENSPNAG00000015836)	cpne2 (ENSPNAG00000015888)	nlrc5 (ENSPNAG00000005083)	cetp (ENSPNAG00000016378)	herpud1 (ENSPNAG00000016400)	slc12a3 (ENSPNAG00000016514)	nup93 (ENSPNAG00000016530)	bbs2 (ENSPNAG00000005140)	B3GNT9 (ENSPNAG00000016652)	phaf1 (ENSPNAG00000016792)	foxl1 (ENSPNAG00000003443) #12	kiaa0513 (ENSPNAG00000016931)	ces3 (ENSPNAG00000016947)	zfpm1 (ENSPNAG00000017014) #22	trhr2 (ENSPNAG00000017034) #23	zc3h18 (ENSPNAG00000017048) #24	ENSPNAG00000017062	TANGO6 (ENSPNAG00000017080)	has3 (ENSPNAG00000017203)	chtf8 (ENSPNAG00000017220)	tbc1d15 (ENSPNAG00000017327)	tph2 (ENSPNAG00000017355)	ENSPNAG00000017340	ENSPNAG00000017361	akip1 (ENSPNAG00000017369)	ENSPNAG00000017416	ENSPNAG00000017436	znf143b (ENSPNAG00000017506)	wee1 (ENSPNAG00000017548)
Mexicana tetra	MODERN SPECIES	9	cpne2 (ENSAMXG00000003597)	ENSAMXG00000035089	ENSAMXG00000003651	cetp (ENSAMXG00000003656)	herpud1 (ENSAMXG00000030407)	slc12a3 (ENSAMXG00000003658)	nup93 (ENSAMXG00000003669)	mt2 (ENSAMXG00000043108)	mt2 (ENSAMXG00000035436)	bbs2 (ENSAMXG00000003683)	B3GNT9 (ENSAMXG00000025793)	phaf1 (ENSAMXG00000003689)	foxl1 (ENSAMXG00000036562) #12	kiaa0513 (ENSAMXG00000003702)	ces3 (ENSAMXG00000003711)	zfpm1 (ENSAMXG00000032676) #22	trhr2 (ENSAMXG00000039053) #23	zc3h18 (ENSAMXG00000003729) #24	ENSAMXG00000003734	TANGO6 (ENSAMXG00000003736)	has3 (ENSAMXG00000038041)	chtf8 (ENSAMXG00000042751)	tbc1d15 (ENSAMXG00000003749)	tph2 (ENSAMXG00000003777)	ENSAMXG00000032109	ENSAMXG00000032906	akip1 (ENSAMXG00000003803)	ENSAMXG00000003813	ENSAMXG00000038841	znf143b (ENSAMXG00000003833)	wee1 (ENSAMXG00000003848)
Electric eel	MODERN SPECIES	296												phaf1 (ENSEEEG00000010348)	foxl1 (ENSEEEG00000010347) #12	kiaa0513 (ENSEEEG00000010345)	ces3 (ENSEEEG00000010338)	zfpm1 (ENSEEEG00000010329) #22	trhr2 (ENSEEEG00000010265) #23	zc3h18 (ENSEEEG00000010263) #24	ENSEEEG00000010262	TANGO6 (ENSEEEG00000010261)	has3 (ENSEEEG00000010260)	chtf8 (ENSEEEG00000010259)	tbc1d15 (ENSEEEG00000009996)	tph2 (ENSEEEG00000009961)	ENSEEEG00000009958	ENSEEEG00000009957	akip1 (ENSEEEG00000009956)	ENSEEEG00000009954	ENSEEEG00000009952	znf143b (ENSEEEG00000009942)	wee1 (ENSEEEG00000009783)
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00940000157894	ENSGT00500000044916	ENSGT00940000157653	ENSGT00940000160652	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b	ENSGT00940000155044.B	ENSGT00390000016353	ENSGT00950000182967	ENSGT00390000017113	ENSGT00940000162243	ENSGT00940000153528.a.a	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00400000025006	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000166253.b	ENSGT00390000017064	ENSGT00390000012348	ENSGT00940000157584.a.a	ENSGT00940000157939	ENSGT00950000183017.b.a.a	ENSGT00990000206677
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	74	ENSGT00940000157894.g	ENSGT00500000044916.`b	ENSGT00940000157653.t	ENSGT00940000160652.a.a	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b.k	ENSGT00940000155044.B.g	ENSGT00390000016353.r	ENSGT00950000182967.o	ENSGT00390000017113	ENSGT00940000162243.e	ENSGT00940000153528.a.a.c	ENSGT00940000162251.o.b #12	ENSGT00390000009535.f	ENSGT00940000166187.b	ENSGT00530000063823.b.a.k #22	ENSGT01100000263484.B.a.e #23	ENSGT00730000111190.c #24	ENSGT00940000161739.d.b	ENSGT00390000010938.c	ENSGT00390000010337.B.a.a.m	ENSGT00400000025006	ENSGT00940000156429.b	ENSGT00950000182885.A.b.b	ENSGT00390000017064.g	ENSGT00390000012348.hb.a	ENSGT00940000157584.a.a.b	ENSGT00940000157939.i	ENSGT00950000183017.b.a.a.a	ENSGT00990000206677	ENSGT00950000183011.c.a.b.e.h.b
Goldfish	MODERN SPECIES	9	rspry1 (ENSCARG00000064320)	psme3ip1 (ENSCARG00000064311)	cpne2 (ENSCARG00000063858)	NLRC5 (ENSCARG00000062617)	cetp (ENSCARG00000062369)	herpud1 (ENSCARG00000062329)	slc12a3 (ENSCARG00000059929)	nup93 (ENSCARG00000059341)	mt2 (ENSCARG00000059276)	bbs2 (ENSCARG00000059164)	B3GNT9 (ENSCARG00000059148)	phaf1 (ENSCARG00000059112)	foxl1 (ENSCARG00000059094) #12	kiaa0513 (ENSCARG00000058995)	ces3 (ENSCARG00000058796)	zfpm1 (ENSCARG00000058753) #22	trhr2 (ENSCARG00000058725) #23	zc3h18 (ENSCARG00000058534) #24	ENSCARG00000058499	TANGO6 (ENSCARG00000058419)	has3 (ENSCARG00000058402)	chtf8 (ENSCARG00000058376)	tbc1d15 (ENSCARG00000056177)	tph2 (ENSCARG00000054556)	ENSCARG00000054447	akip1 (ENSCARG00000054398)	znf143b (ENSCARG00000054362)	wee1 (ENSCARG00000053881)	swap70b (ENSCARG00000053529)	ampd3b (ENSCARG00000051224)	rnf141 (ENSCARG00000051028)
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00530000064134.a.a.d	ENSGT00940000157894.g	ENSGT00500000044916.`b	ENSGT00940000157653.t	ENSGT00940000160652.a.a	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b.k	ENSGT00940000155044.B.g	ENSGT00390000016353.r	ENSGT00390000017113	ENSGT00940000162243.e	ENSGT00940000153528.a.a.c	ENSGT00940000162251.o.b #12	ENSGT00390000009535.f	ENSGT00940000166187.b	ENSGT00530000063823.b.a.k #22	ENSGT01100000263484.B.a.e #23	ENSGT00730000111190.c #24	ENSGT00940000161739.d.b	ENSGT00390000010938.c	ENSGT00390000010337.B.a.a.m	ENSGT00400000025006	ENSGT00940000156429.b	ENSGT00940000154318.A.b.b	ENSGT00940000166253.b.a	ENSGT00390000017064.g	ENSGT00390000012348.hb.a	ENSGT00940000157584.a.a.b	ENSGT00940000157939.i	ENSGT00950000183017.b.a.a.a	ENSGT00990000206677
Common carp reference	MODERN SPECIES	19	si:ch211-212o1.2 (ENSCCRG00000055857)	znf423 (ENSCCRG00000039463)	si:ch211-216l23.2 (ENSCCRG00000003588)	rspry1 (ENSCCRG00000003628)	psme3ip1 (ENSCCRG00000005874)	cpne2 (ENSCCRG00000033807)	NLRC5 (ENSCCRG00000037228)	cetp (ENSCCRG00000037266)	herpud1 (ENSCCRG00000037277)	slc12a3 (ENSCCRG00000037360)	nup93 (ENSCCRG00000039603)	ENSCCRG00000073396	phaf1 (ENSCCRG00000053484)	ENSCCRG00000040342	ENSCCRG00000040355	zfpm1 (ENSCCRG00000023911) #22	trhr2 (ENSCCRG00000032543) #23	zc3h18 (ENSCCRG00000082164) #24	ENSCCRG00000011177	TANGO6 (ENSCCRG00000011179)	has3 (ENSCCRG00000081644)	chtf8 (ENSCCRG00000055964)	tbc1d15 (ENSCCRG00000058474)	ENSCCRG00000082847	tph2 (ENSCCRG00000075548)	akip1 (ENSCCRG00000072115)	ENSCCRG00000040896	ENSCCRG00000031551	znf143b (ENSCCRG00000031534)	wee1 (ENSCCRG00000072285)	swap70b (ENSCCRG00000031113)
Golden-line barbel	MODERN SPECIES	376	rspry1 (ENSSGRG00000027624)	psme3ip1 (ENSSGRG00000027620)	cpne2 (ENSSGRG00000027619)	ENSSGRG00000027618	ENSSGRG00000027406	ENSSGRG00000027400	herpud1 (ENSSGRG00000027398)	slc12a3 (ENSSGRG00000027397)	nup93 (ENSSGRG00000026278)	bbs2 (ENSSGRG00000025861)	B3GNT9 (ENSSGRG00000025849)	phaf1 (ENSSGRG00000025755)	foxl1 (ENSSGRG00000025750) #12	kiaa0513 (ENSSGRG00000025631)	ENSSGRG00000025596	zfpm1 (ENSSGRG00000025591) #22	trhr2 (ENSSGRG00000025589) #23
Cyprininae	ANCESTRAL SPECIES	123	ENSGT00940000158492.b.b.b.b	ENSGT00530000064134.a.a.c	ENSGT00940000157894.h	ENSGT00500000044916.ab	ENSGT00940000157653.s	ENSGT00940000160652.a.b	ENSGT00390000017671.b.l	ENSGT00940000155044.B.h	ENSGT00390000016353.q	ENSGT00950000182967.p	ENSGT00940000162243.f	ENSGT00940000153528.a.a.d	ENSGT00940000162251.o.a #12	ENSGT00390000009535.e	ENSGT00940000166187.a	ENSGT00530000063823.b.a.l #22	ENSGT01100000263484.B.a.f #23	ENSGT00730000111190.d #24	ENSGT00940000161739.d.a	ENSGT00390000010938.d	ENSGT00390000010337.B.a.a.n	ENSGT00990000211668	ENSGT00940000156429.a	ENSGT00950000182885.A.b.a	ENSGT00940000154318.A.b.a	ENSGT00940000166253.b	ENSGT00390000017064.h	ENSGT00390000012348.ib	ENSGT00940000157584.a.a.a	ENSGT00940000157939.j	ENSGT00950000183017.b.a.a.b
Goldfish	MODERN SPECIES	37	siah1 (ENSCARG00000065769)	n4bp1 (ENSCARG00000065774)	cbln1 (ENSCARG00000065779)	si:ch211-212o1.2 (ENSCARG00000065783)	znf423 (ENSCARG00000065792)	ENSCARG00000065826	si:ch211-216l23.2 (ENSCARG00000065838)	rspry1 (ENSCARG00000065846)	psme3ip1 (ENSCARG00000065882)	cpne2 (ENSCARG00000065927)	herpud1 (ENSCARG00000066596)	mt (ENSCARG00000066625)	phaf1 (ENSCARG00000066763)	foxl1 (ENSCARG00000067076) #12	kiaa0513 (ENSCARG00000067086)	zfpm1 (ENSCARG00000067133) #22	trhr2 (ENSCARG00000067148) #23	zc3h18 (ENSCARG00000067159) #24	ENSCARG00000067207	has3 (ENSCARG00000067220)	tbc1d15 (ENSCARG00000067291)	ENSCARG00000067799	ENSCARG00000067810	akip1 (ENSCARG00000067815)	ENSCARG00000067825	ENSCARG00000067831	wee1 (ENSCARG00000067887)	swap70b (ENSCARG00000068071)	ampd3b (ENSCARG00000068249)	ENSCARG00000069374	eif4g2b (ENSCARG00000069397)
Cyprininae_a	ANCESTRAL SPECIES	131	ENSGT00940000158492.b.b.b.b	ENSGT00530000064134.a.a.c	ENSGT00940000157894.h	ENSGT00500000044916.ab	ENSGT00940000157653.s	ENSGT00940000160652.a.b	ENSGT00390000017671.b.l	ENSGT00940000155044.B.h	ENSGT00390000016353.q	ENSGT00950000182967.p	ENSGT00940000162243.f	ENSGT00940000153528.a.a.d	ENSGT00940000162251.o.a #12	ENSGT00390000009535.e	ENSGT00940000166187.a	ENSGT00530000063823.b.a.l #22	ENSGT01100000263484.B.a.f #23	ENSGT00730000111190.d #24	ENSGT00940000161739.d.a	ENSGT00390000010938.d	ENSGT00390000010337.B.a.a.n	ENSGT00990000211668	ENSGT00940000156429.a	ENSGT00950000182885.A.b.a	ENSGT00940000154318.A.b.a	ENSGT00940000166253.b.b	ENSGT00390000017064.h	ENSGT00390000012348.ib	ENSGT00940000157584.a.a.a	ENSGT00940000157939.j	ENSGT00950000183017.b.a.a.b
Common carp reference	MODERN SPECIES	9	si:ch211-212o1.2 (ENSCCRG00000080717)	ZNF423 (ENSCCRG00000078744)	si:ch211-216l23.2 (ENSCCRG00000080274)	rspry1 (ENSCCRG00000078907)	psme3ip1 (ENSCCRG00000063767)	cpne2 (ENSCCRG00000006043)	NLRC5 (ENSCCRG00000014861)	ENSCCRG00000068018	herpud1 (ENSCCRG00000015768)	nup93 (ENSCCRG00000029280)	bbs2 (ENSCCRG00000029334)	phaf1 (ENSCCRG00000030147)	foxl1 (ENSCCRG00000030167) #12	kiaa0513 (ENSCCRG00000042703)	ENSCCRG00000042705	zfpm1 (ENSCCRG00000058445) #22	trhr2 (ENSCCRG00000059353) #23	zc3h18 (ENSCCRG00000025805) #24	ENSCCRG00000025798	has3 (ENSCCRG00000072628)	ENSCCRG00000025791	tbc1d15 (ENSCCRG00000070264)	tph2 (ENSCCRG00000040899)	ENSCCRG00000024885	ENSCCRG00000024878	akip1 (ENSCCRG00000024866)	ENSCCRG00000024855	znf143b (ENSCCRG00000024784)	wee1 (ENSCCRG00000031167)	swap70b (ENSCCRG00000024773)	ampd3b (ENSCCRG00000058948)
Golden-line barbel	MODERN SPECIES	54	ZNF423 (ENSSGRG00000030816)	si:ch211-216l23.2 (ENSSGRG00000030818)	rspry1 (ENSSGRG00000030820)	ENSSGRG00000030933	cpne2 (ENSSGRG00000030941)	herpud1 (ENSSGRG00000031405)	slc12a3 (ENSSGRG00000031406)	nup93 (ENSSGRG00000031410)	mt2 (ENSSGRG00000032242)	B3GNT9 (ENSSGRG00000032247)	phaf1 (ENSSGRG00000032249)	foxl1 (ENSSGRG00000032438) #12	foxl1 (ENSSGRG00000032439) #12	kiaa0513 (ENSSGRG00000032440)	ENSSGRG00000032447	zfpm1 (ENSSGRG00000032454) #22	trhr2 (ENSSGRG00000032459) #23	zc3h18 (ENSSGRG00000032462) #24	ENSSGRG00000032466	TANGO6 (ENSSGRG00000032471)	has3 (ENSSGRG00000032485)	chtf8 (ENSSGRG00000032486)	ENSSGRG00000032500	ENSSGRG00000032501	ENSSGRG00000032504	tph2 (ENSSGRG00000032514)	ENSSGRG00000032640	ENSSGRG00000032641	akip1 (ENSSGRG00000032642)	ENSSGRG00000032644	znf143b (ENSSGRG00000032645)
Zebrafish	MODERN SPECIES	9	cpne2 (ENSDARG00000007753)	nlrc5 (ENSDARG00000024631)	cetp (ENSDARG00000030872)	herpud1 (ENSDARG00000024314)	slc12a3 (ENSDARG00000013855)	nup93 (ENSDARG00000003487)	mt2 (ENSDARG00000041623)	bbs2 (ENSDARG00000041621)	B3GNT9 (ENSDARG00000041616)	phaf1 (ENSDARG00000041560)	foxl1 (ENSDARG00000008133) #12	ENSDARG00000092255	kiaa0513 (ENSDARG00000041599)	ces3 (ENSDARG00000041595)	ces2a (ENSDARG00000041569)	zfpm1 (ENSDARG00000041572) #22	trhr2 (ENSDARG00000093901) #23	zc3h18 (ENSDARG00000062506) #24	il17c (ENSDARG00000057180)	TANGO6 (ENSDARG00000034001)	has3 (ENSDARG00000057210)	chtf8 (ENSDARG00000069045)	tbc1d15 (ENSDARG00000057218)	tph2 (ENSDARG00000057239)	ENSDARG00000092364	ENSDARG00000069038	akip1 (ENSDARG00000069037)	ENSDARG00000101630	znf143b (ENSDARG00000041581)	wee1 (ENSDARG00000093864)	swap70b (ENSDARG00000057286)
Osteoglossiformes	ANCESTRAL SPECIES	26	ENSGT00940000158841	ENSGT00390000015057	ENSGT01030000234925	ENSGT00390000018698	ENSGT00940000156704	ENSGT00940000166411	ENSGT00940000157543	ENSGT00390000012498	ENSGT00940000158087	ENSGT00940000157517	ENSGT00390000018220.i	ENSGT00940000155273	ENSGT00940000162251 #12	ENSGT00390000009535	ENSGT00940000166187	ENSGT00530000063823.b.a #22	ENSGT01100000263484.B.a #23	ENSGT00730000111190 #24	ENSGT00940000166375.a	ENSGT00390000010938	ENSGT00390000010337.B.a.a	ENSGT00940000153533.b	ENSGT00390000014299	ENSGT00940000164450.b	ENSGT00940000156938.e	ENSGT00390000002381.b	ENSGT00390000006293	ENSGT00940000166270	ENSGT00390000005410	ENSGT00940000155218.B	ENSGT00530000064134.a.a
P. kingsleyae	MODERN SPECIES	23	znf276 (ENSPKIG00000004626)	vps9d1 (ENSPKIG00000004558)	ENSPKIG00000004510	pdf (ENSPKIG00000004491)	tat (ENSPKIG00000004444)	zgc:56622 (ENSPKIG00000004405)	klhl36 (ENSPKIG00000004368)	cotl1 (ENSPKIG00000004291)	meak7 (ENSPKIG00000004260)	plcg2 (ENSPKIG00000004194)	CMIP (ENSPKIG00000004161)	GAN (ENSPKIG00000004115)	foxl1 (ENSPKIG00000004082) #12	kiaa0513 (ENSPKIG00000003996)	ces3 (ENSPKIG00000003830)	zfpm1 (ENSPKIG00000003731) #22	trhr2 (ENSPKIG00000003707) #23	zc3h18 (ENSPKIG00000003664) #24	ENSPKIG00000003637	TANGO6 (ENSPKIG00000003592)	has3 (ENSPKIG00000003565)	utp4 (ENSPKIG00000003525)	wfdc1 (ENSPKIG00000003498)	KCNG4 (ENSPKIG00000003478)	ENSPKIG00000003451	ENSPKIG00000003361	mlycd (ENSPKIG00000003317)	CDH13 (ENSPKIG00000003185)	ENSPKIG00000003080	znf423 (ENSPKIG00000003000)	cbln1 (ENSPKIG00000002929)
Asian bonytongue	MODERN SPECIES	22	pdf (ENSSFOG00015023265)	tat (ENSSFOG00015023250)	zgc:56622 (ENSSFOG00015023233)	klhl36 (ENSSFOG00015023227)	cotl1 (ENSSFOG00015030724)	meak7 (ENSSFOG00015023215)	plcg2 (ENSSFOG00015023185)	plcg2 (ENSSFOG00015023087)	ENSSFOG00015023044	ENSSFOG00015023034	CMIP (ENSSFOG00015023002)	GAN (ENSSFOG00015022951)	foxl1 (ENSSFOG00015027338) #12	kiaa0513 (ENSSFOG00015022903)	ENSSFOG00015022870	zfpm1 (ENSSFOG00015026433) #22	trhr2 (ENSSFOG00015022764) #23	zc3h18 (ENSSFOG00015022688) #24	ENSSFOG00015022662	TANGO6 (ENSSFOG00015022639)	has3 (ENSSFOG00015028764)	utp4 (ENSSFOG00015022605)	wfdc1 (ENSSFOG00015022596)	ENSSFOG00015022589	KCNG4 (ENSSFOG00015022581)	ENSSFOG00015022575	hsbp1b (ENSSFOG00015022571)	ENSSFOG00015022564	mlycd (ENSSFOG00015012486)	CDH13 (ENSSFOG00015012506)	si:ch211-216l23.2 (ENSSFOG00015012576)
Spotted gar	MODERN SPECIES	662	nqo1 (ENSLOCG00000002794)	tat (ENSLOCG00000002775)	klhl36 (ENSLOCG00000002761)	cotl1 (ENSLOCG00000002734)	meak7 (ENSLOCG00000002721)	ATP2C2 (ENSLOCG00000002689)	plcg2 (ENSLOCG00000002618)	CMIP (ENSLOCG00000002603)	GAN (ENSLOCG00000002584)	FOXL1 (ENSLOCG00000002568) #12	FOXC2 (ENSLOCG00000002557) #11	kiaa0513 (ENSLOCG00000002529)	ENSLOCG00000002519	banp (ENSLOCG00000002495) #21	ENSLOCG00000017589	zfpm1 (ENSLOCG00000002480) #22	trhr2 (ENSLOCG00000002461) #23	zc3h18 (ENSLOCG00000002443) #24	ENSLOCG00000002428	TANGO6 (ENSLOCG00000002394)	has3 (ENSLOCG00000002379)	chtf8 (ENSLOCG00000002367)	utp4 (ENSLOCG00000002332)	wfdc1 (ENSLOCG00000002319)	ENSLOCG00000002305	kcng4a (ENSLOCG00000002291)	ENSLOCG00000002278	hsbp1a (ENSLOCG00000002268)	ENSLOCG00000002229	mlycd (ENSLOCG00000002214)	CDH13 (ENSLOCG00000002199)
Reedfish	MODERN SPECIES	17	uba2 (ENSECRG00000006760)	PDCD2L (ENSECRG00000006785)	ENSECRG00000006797	ENSECRG00000006883	FBXO31 (ENSECRG00000006978) #14	ENSECRG00000006987	map1lc3b (ENSECRG00000006993) #15	ZCCHC14 (ENSECRG00000007002) #16	ENSECRG00000007011 #16	jph3b (ENSECRG00000007027) #17	slc7a5 (ENSECRG00000007035) ##19	ca5a (ENSECRG00000007044)	banp (ENSECRG00000007070) #21	ENSECRG00000007083	ENSECRG00000007089	zfpm1 (ENSECRG00000007108) #22	trhr2 (ENSECRG00000007125) #23	zc3h18 (ENSECRG00000007149) #24	ENSECRG00000007166	TANGO6 (ENSECRG00000007177)	has3 (ENSECRG00000007193)	chtf8 (ENSECRG00000007200)	utp4 (ENSECRG00000007210)	wfdc1 (ENSECRG00000007233)	banp (ENSECRG00000007281) #21	ENSECRG00000007404	kcng4a (ENSECRG00000007411)	ENSECRG00000007425	hsbp1a (ENSECRG00000007437)	ENSECRG00000007449	mlycd (ENSECRG00000007466)
Elephant shark	MODERN SPECIES	1497	ENSCMIG00000015653	SLC7A9 (ENSCMIG00000015630)	zgc:165481 (ENSCMIG00000015609)	CEP89 (ENSCMIG00000015608)	ENSCMIG00000015604	PHLPP2 (ENSCMIG00000015583)	ap1g1 (ENSCMIG00000015552)	ZCCHC14 (ENSCMIG00000015539) #16	zgc:77439 (ENSCMIG00000015532)	jph3b (ENSCMIG00000015528) #17	klhdc4 (ENSCMIG00000015512) #18	SLC7A5 (ENSCMIG00000015409) ##19	ca5a (ENSCMIG00000015373)	banp (ENSCMIG00000015369) #21	ENSCMIG00000015363	zfpm1 (ENSCMIG00000015356) #22	trhr2 (ENSCMIG00000015354) #23	map1lc3b (ENSCMIG00000015351) #15	tcf25 (ENSCMIG00000015336)	ENSCMIG00000015327	ENSCMIG00000015319	ENSCMIG00000015315	ENSCMIG00000015310	ENSCMIG00000015304	nip7 (ENSCMIG00000015290)	dpep1 (ENSCMIG00000015279)	sult5a1 (ENSCMIG00000015266)	CPNE7 (ENSCMIG00000015260)	rpl13 (ENSCMIG00000015237)	SPG7 (ENSCMIG00000015227)	ANKRD11 (ENSCMIG00000015211)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00530000063823.b.a #22
Hagfish	MODERN SPECIES	1071							ENSEBUG00000005046	ndufv2 (ENSEBUG00000001268)	ENSEBUG00000010767	chmp4ba (ENSEBUG00000000681)	ENSEBUG00000009404	ENSEBUG00000016639	ENSEBUG00000010447	ENSEBUG00000008575	ENSEBUG00000004305	ENSEBUG00000016789 #22	ppm1kb (ENSEBUG00000013620)	ENSEBUG00000005064	ENSEBUG00000001415	ENSEBUG00000005685	ENSEBUG00000005267	ENSEBUG00000016668	pigu (ENSEBUG00000008600)	map1lc3a (ENSEBUG00000001084)	ENSEBUG00000017035	ENSEBUG00000009981	ENSEBUG00000004051	bbs2 (ENSEBUG00000001492)	ENSEBUG00000012646
Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000063823.b.b ##22
Cyclostomata	ANCESTRAL SPECIES	162																ENSGT00530000063823.b.b ##22	ENSGT00940000159433	ENSGT00390000013048
Lamprey	MODERN SPECIES	2493																ENSPMAG00000008800 ##22	ENSPMAG00000008801
Hagfish	MODERN SPECIES	433										ENSEBUG00000008447	ENSEBUG00000009693	ENSEBUG00000012441	ENSEBUG00000001133	mmp2 (ENSEBUG00000007543)	ENSEBUG00000007209	ENSEBUG00000005329 ##22	ENSEBUG00000012338	ENSEBUG00000010098	BOLA3 (ENSEBUG00000002029)	ENSEBUG00000012574	cnep1r1 (ENSEBUG00000013570)	TNNC2 (ENSEBUG00000004264)	ENSEBUG00000008070	ENSEBUG00000010258	ENSEBUG00000009855
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00530000063823.b.b ##22
Elephant shark	MODERN SPECIES	1584								runx1t1 (ENSCMIG00000013255)	TRIQK (ENSCMIG00000013222)	cibar1 (ENSCMIG00000013219)	rbm12bb (ENSCMIG00000013216)	TMEM67 (ENSCMIG00000013182)	ABRA (ENSCMIG00000013169)	oxr1b (ENSCMIG00000013085)	ENSCMIG00000013056	zfpm2a (ENSCMIG00000013052) ##22	angpt1 (ENSCMIG00000013033)	RSPO2 (ENSCMIG00000013028)	eif3e (ENSCMIG00000013017)	emc2 (ENSCMIG00000012998)	TMEM74 (ENSCMIG00000012994)	trhrb (ENSCMIG00000012986) ##23	nudcd1 (ENSCMIG00000012977)	eny2 (ENSCMIG00000012970)	pkhd1l1.2 (ENSCMIG00000012948)	septin7a (ENSCMIG00000012775)
Euteleostomi	ANCESTRAL SPECIES	145							ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Actinopterygii	ANCESTRAL SPECIES	173							ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Neopterygii	ANCESTRAL SPECIES	90	ENSGT00510000048187	ENSGT00390000000724.c.b	ENSGT00940000156554	ENSGT00390000002368	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00390000008074	ENSGT00390000017094	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00910000144277	ENSGT01030000235116	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014398
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	44	ENSGT00940000154686.b	ENSGT00940000153393.A	ENSGT00510000048187	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00910000144277	ENSGT01030000235116	ENSGT00940000155682.h	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011435	ENSGT00940000160768
Clupeocephala	ANCESTRAL SPECIES	24	ENSGT00940000154686.b	ENSGT00940000153393.A	ENSGT00510000048187	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00910000144277	ENSGT01030000235116	ENSGT00940000155682.h	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011435	ENSGT00940000160768
Euteleosteomorpha	ANCESTRAL SPECIES	127								ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000153446.a.a.x	ENSGT00940000158008	ENSGT00420000029792.qb.a
Acanthomorphata	ANCESTRAL SPECIES	52	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Cod	MODERN SPECIES	2	usp45 (ENSGMOG00000006066)	ENSGMOG00000006041	coq3 (ENSGMOG00000006023)	FAXC (ENSGMOG00000006011)	fbxl4 (ENSGMOG00000005992)	pou3f2b (ENSGMOG00000005989)	mms22l (ENSGMOG00000005866)	klhl32 (ENSGMOG00000005838)	FZD6 (ENSGMOG00000005808)	CTHRC1 (ENSGMOG00000033567)	SLC25A32 (ENSGMOG00000005773)	dcaf13 (ENSGMOG00000005753)	RIMS2 (ENSGMOG00000005698)	DCSTAMP (ENSGMOG00000005676)	dpys (ENSGMOG00000005652)	zfpm2a (ENSGMOG00000023059) ##22	ENSGMOG00000005625	ENSGMOG00000005590	sqlea (ENSGMOG00000005565)	ENSGMOG00000024673	rnf144b (ENSGMOG00000018352)	ENSGMOG00000018367	ATP6V1C1 (ENSGMOG00000018397)	ENSGMOG00000018418	UBR5 (ENSGMOG00000018440)	ENSGMOG00000018533	LAPTM4B (ENSGMOG00000010950)	MATN2 (ENSGMOG00000010960)	ENSGMOG00000028137	RIDA (ENSGMOG00000000589)	POP1 (ENSGMOG00000000659)
Euacanthomorphacea	ANCESTRAL SPECIES	28	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Pinecone sodierfish	MODERN SPECIES	7	coq3 (ENSMMDG00005020823)	FAXC (ENSMMDG00005020820)	ENSMMDG00005020818	fbxl4 (ENSMMDG00005020814)	pou3f2b (ENSMMDG00005020813)	mms22l (ENSMMDG00005020800)	klhl32 (ENSMMDG00005020794)	fzd6 (ENSMMDG00005020790)	CTHRC1 (ENSMMDG00005020786)	slc25a32b (ENSMMDG00005020780)	dcaf13 (ENSMMDG00005020741)	RIMS2 (ENSMMDG00005020728)	ENSMMDG00005020723	DCSTAMP (ENSMMDG00005020718)	dpys (ENSMMDG00005020710)	zfpm2a (ENSMMDG00005020705) ##22	ENSMMDG00005020699	oxr1b (ENSMMDG00005019992)	sqlea (ENSMMDG00005019944)	rnf144b (ENSMMDG00005019939)	ENSMMDG00005019885	atp6v1c1a (ENSMMDG00005019843)	azin1a (ENSMMDG00005019831)	KLF10 (ENSMMDG00005019829)	ubr5 (ENSMMDG00005019800)	ENSMMDG00005019783	LAPTM4B (ENSMMDG00005019780)	MATN2 (ENSMMDG00005019776)	rida (ENSMMDG00005019771)	POP1 (ENSMMDG00005019767)	NIPAL2 (ENSMMDG00005019765)
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Tiger tail seahorse	MODERN SPECIES	480	usp45 (ENSHCOG00000014479)	pnisr (ENSHCOG00000014469)	coq3 (ENSHCOG00000014459)	FAXC (ENSHCOG00000014451)	fbxl4 (ENSHCOG00000014433)	pou3f2b (ENSHCOG00000014409)	mms22l (ENSHCOG00000014392)	klhl32 (ENSHCOG00000014351)	fzd6 (ENSHCOG00000014338)	CTHRC1 (ENSHCOG00000014333)	slc25a32b (ENSHCOG00000014320)	dcaf13 (ENSHCOG00000014302)	RIMS2 (ENSHCOG00000014276)	DCSTAMP (ENSHCOG00000014237)	dpys (ENSHCOG00000014224)	zfpm2a (ENSHCOG00000014205) ##22	ENSHCOG00000014186	oxr1b (ENSHCOG00000014145)	sqlea (ENSHCOG00000014116)	rnf144b (ENSHCOG00000014090)	ENSHCOG00000014070	ENSHCOG00000014059	atp6v1c1a (ENSHCOG00000014045)	azin1a (ENSHCOG00000014039)	ubr5 (ENSHCOG00000014022)	ENSHCOG00000013917	ENSHCOG00000013907	POP1 (ENSHCOG00000013888)	NIPAL2 (ENSHCOG00000013854)	KCNS2 (ENSHCOG00000013836)	osr2 (ENSHCOG00000013823)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Climbing perch	MODERN SPECIES	7	usp45 (ENSATEG00000024707)	pnisr (ENSATEG00000024712)	coq3 (ENSATEG00000024719)	FAXC (ENSATEG00000024722)	fbxl4 (ENSATEG00000024727)	pou3f2b (ENSATEG00000024729)	mms22l (ENSATEG00000024732)	klhl32 (ENSATEG00000024738)	FZD6 (ENSATEG00000024743)	CTHRC1 (ENSATEG00000028557)	SLC25A32 (ENSATEG00000024748)	dcaf13 (ENSATEG00000024751)	RIMS2 (ENSATEG00000024752)	DCSTAMP (ENSATEG00000024759)	dpys (ENSATEG00000024762)	zfpm2a (ENSATEG00000030146) ##22	ENSATEG00000024765	ENSATEG00000024769	sqlea (ENSATEG00000024780)	rnf144b (ENSATEG00000024782)	ENSATEG00000026613	ENSATEG00000024783	atp6v1c1a (ENSATEG00000024785)	AZIN1 (ENSATEG00000027011)	ENSATEG00000024793	ubr5 (ENSATEG00000024796)	ENSATEG00000024800	LAPTM4B (ENSATEG00000024803)	MATN2 (ENSATEG00000024806)	RIDA (ENSATEG00000026544)	POP1 (ENSATEG00000024814)
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000021469	coq3 (ENSBSLG00000021499)	FAXC (ENSBSLG00000021507)	fbxl4 (ENSBSLG00000021526)	pou3f2b (ENSBSLG00000021582)	ENSBSLG00000021587	mms22l (ENSBSLG00000021600)	klhl32 (ENSBSLG00000021625)	fzd6 (ENSBSLG00000021680)	CTHRC1 (ENSBSLG00000021683)	slc25a32b (ENSBSLG00000021691)	dcaf13 (ENSBSLG00000021748)	RIMS2 (ENSBSLG00000021942)	DCSTAMP (ENSBSLG00000023998)	dpys (ENSBSLG00000024002)	zfpm2a (ENSBSLG00000024017) ##22	ENSBSLG00000024022	oxr1b (ENSBSLG00000024068)	sqlea (ENSBSLG00000024431)	rnf144b (ENSBSLG00000024548)	ENSBSLG00000024559	ENSBSLG00000024579	atp6v1c1a (ENSBSLG00000024614)	fbl (ENSBSLG00000024634)	azin1a (ENSBSLG00000024637)	ENSBSLG00000024648	ubr5 (ENSBSLG00000024663)	ENSBSLG00000024827	LAPTM4B (ENSBSLG00000024837)	MATN2 (ENSBSLG00000024860)	rida (ENSBSLG00000024938)
Zig-zag eel	MODERN SPECIES	7	FAXC (ENSMAMG00000002875)	fbxl4 (ENSMAMG00000002925)	pou3f2b (ENSMAMG00000002968)	ENSMAMG00000002985	mms22l (ENSMAMG00000003010)	klhl32 (ENSMAMG00000003055)	FZD6 (ENSMAMG00000003116)	CTHRC1 (ENSMAMG00000024749)	SLC25A32 (ENSMAMG00000003174)	dcaf13 (ENSMAMG00000003196)	ENSMAMG00000027837	ENSMAMG00000003237	ENSMAMG00000027115	DCSTAMP (ENSMAMG00000003310)	dpys (ENSMAMG00000003334)	zfpm2a (ENSMAMG00000003375) ##22	ENSMAMG00000025338	ENSMAMG00000003433	sqlea (ENSMAMG00000003558)	ENSMAMG00000003602	ENSMAMG00000028643	ENSMAMG00000003616	atp6v1c1a (ENSMAMG00000003662)	AZIN1 (ENSMAMG00000003682)	ENSMAMG00000003737	ubr5 (ENSMAMG00000003764)	ENSMAMG00000003934	LAPTM4B (ENSMAMG00000003959)	MATN2 (ENSMAMG00000003989)	RIDA (ENSMAMG00000025913)	POP1 (ENSMAMG00000004040)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Seriola	ANCESTRAL SPECIES	16	ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Greater amberjack	MODERN SPECIES	75	prdm13 (ENSSDUG00000009052)	zgc:172323 (ENSSDUG00000009016)	usp45 (ENSSDUG00000008936)	ENSSDUG00000008896	coq3 (ENSSDUG00000008881)	FAXC (ENSSDUG00000008862)	fbxl4 (ENSSDUG00000008841)	pou3f2b (ENSSDUG00000008829)	mms22l (ENSSDUG00000008788)	klhl32 (ENSSDUG00000008759)	slc25a32b (ENSSDUG00000008739)	fzd6 (ENSSDUG00000008650)	RIMS2 (ENSSDUG00000008595)	DCSTAMP (ENSSDUG00000008577)	dpys (ENSSDUG00000008533)	zfpm2a (ENSSDUG00000008509) ##22	ENSSDUG00000008468	oxr1b (ENSSDUG00000008401)	sqlea (ENSSDUG00000008355)	rnf144b (ENSSDUG00000008297)	ENSSDUG00000008279	ENSSDUG00000008256	ENSSDUG00000008249	atp6v1c1a (ENSSDUG00000008212)	azin1a (ENSSDUG00000008171)	ENSSDUG00000008161	ubr5 (ENSSDUG00000008072)	ENSSDUG00000008044	LAPTM4B (ENSSDUG00000008032)	MATN2 (ENSSDUG00000007898)	rida (ENSSDUG00000007850)
Yellowtail amberjack	MODERN SPECIES	2851	usp45 (ENSSLDG00000010986)	ENSSLDG00000010935	coq3 (ENSSLDG00000010913)	FAXC (ENSSLDG00000010896)	fbxl4 (ENSSLDG00000010857)	pou3f2b (ENSSLDG00000010826)	mms22l (ENSSLDG00000010725)	klhl32 (ENSSLDG00000010642)	fzd6 (ENSSLDG00000010610)	CTHRC1 (ENSSLDG00000010570)	slc25a32b (ENSSLDG00000010587)	dcaf13 (ENSSLDG00000010517)	RIMS2 (ENSSLDG00000009965)	DCSTAMP (ENSSLDG00000009867)	dpys (ENSSLDG00000009814)	zfpm2a (ENSSLDG00000009738) ##22	ENSSLDG00000009681	oxr1b (ENSSLDG00000009612)	sqlea (ENSSLDG00000009543)	rnf144b (ENSSLDG00000009499)	ENSSLDG00000009475	atp6v1c1a (ENSSLDG00000009421)
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010015343	coq3 (ENSLCAG00010015327)	FAXC (ENSLCAG00010015324)	fbxl4 (ENSLCAG00010015320)	pou3f2b (ENSLCAG00010015318)	ENSLCAG00010015312	mms22l (ENSLCAG00010015298)	klhl32 (ENSLCAG00010015286)	fzd6 (ENSLCAG00010015284)	CTHRC1 (ENSLCAG00010015283)	slc25a32b (ENSLCAG00010015276)	dcaf13 (ENSLCAG00010015269)	RIMS2 (ENSLCAG00010015107)	ENSLCAG00010015043	dpys (ENSLCAG00010015039)	zfpm2a (ENSLCAG00010015029) ##22	ENSLCAG00010015026	oxr1b (ENSLCAG00010014947)	sqlea (ENSLCAG00010014851)	rnf144b (ENSLCAG00010014817)	ENSLCAG00010014793	atp6v1c1a (ENSLCAG00010014742)	ENSLCAG00010014705	gtf2h1 (ENSLCAG00010014685)	hps5 (ENSLCAG00010014675)	ENSLCAG00010014553	RAB3IL1 (ENSLCAG00010014314)	ENSLCAG00010014273	fth1b (ENSLCAG00010014266)	ENSLCAG00010014233	pgghg (ENSLCAG00010014216)
Pleuronectoidei	ANCESTRAL SPECIES	36	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478	ENSGT00940000159321
Turbot	MODERN SPECIES		FAXC (ENSSMAG00000008873)	ENSSMAG00000009110	fbxl4 (ENSSMAG00000008904)	pou3f2b (ENSSMAG00000022088)	ENSSMAG00000008932	mms22l (ENSSMAG00000008984)	klhl32 (ENSSMAG00000009004)	FZD6 (ENSSMAG00000009085)	CTHRC1 (ENSSMAG00000009092)	ENSSMAG00000026766	SLC25A32 (ENSSMAG00000009529)	dcaf13 (ENSSMAG00000009568)	RIMS2 (ENSSMAG00000009620)	DCSTAMP (ENSSMAG00000009668)	dpys (ENSSMAG00000009701)	zfpm2a (ENSSMAG00000009753) ##22	ENSSMAG00000009783	ENSSMAG00000009858	sqlea (ENSSMAG00000009991)	ENSSMAG00000010035	ENSSMAG00000010080	atp6v1c1a (ENSSMAG00000010166)	ENSSMAG00000010181	ubr5 (ENSSMAG00000010194)	ENSSMAG00000010329	LAPTM4B (ENSSMAG00000010374)	MATN2 (ENSSMAG00000010420)	RIDA (ENSSMAG00000010449)	POP1 (ENSSMAG00000010467)	NIPAL2 (ENSSMAG00000010528)	KCNS2 (ENSSMAG00000010538)
Tongue sole	MODERN SPECIES	4	PRELID3A (ENSCSEG00000009240)	KLHL38 (ENSCSEG00000009264)	LRATD2 (ENSCSEG00000009266)	ENSCSEG00000009271	washc5 (ENSCSEG00000009283)	EXT1 (ENSCSEG00000009335)	rad21a (ENSCSEG00000009353)	eif3ha (ENSCSEG00000009383)	CSMD3 (ENSCSEG00000009440)	zgc:110410 (ENSCSEG00000009872)	ANKIB1 (ENSCSEG00000009906)	eomesb (ENSCSEG00000009943)	cmc1 (ENSCSEG00000009952)	azi2 (ENSCSEG00000009968)	rbms3 (ENSCSEG00000010011)	zfpm2a (ENSCSEG00000010109) ##22	ENSCSEG00000010131	oxr1b (ENSCSEG00000010186)	sqlea (ENSCSEG00000010244)	rnf144b (ENSCSEG00000010265)	ENSCSEG00000010286	atp6v1c1a (ENSCSEG00000008382)	azin1a (ENSCSEG00000008401)	KLF10 (ENSCSEG00000008428)	ubr5 (ENSCSEG00000008448)	ENSCSEG00000008629	LAPTM4B (ENSCSEG00000008647)	MATN2 (ENSCSEG00000008654)	rida (ENSCSEG00000008726)	POP1 (ENSCSEG00000008737)	NIPAL2 (ENSCSEG00000008755)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00940000157719	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00950000182995.e.b.ab	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00390000017094	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00420000029792.qb.a	ENSGT00390000017478	ENSGT00940000159321
Fugu	MODERN SPECIES	19	ENSTRUG00000000277	coq3 (ENSTRUG00000000262)	FAXC (ENSTRUG00000000256)	fbxl4 (ENSTRUG00000000241)	pou3f2b (ENSTRUG00000025003)	mms22l (ENSTRUG00000000215)	klhl32 (ENSTRUG00000000186)	fzd6 (ENSTRUG00000006957)	CTHRC1 (ENSTRUG00000020154)	slc25a32b (ENSTRUG00000025767)	dcaf13 (ENSTRUG00000007438)	ENSTRUG00000032683	RIMS2 (ENSTRUG00000007697)	DCSTAMP (ENSTRUG00000008414)	dpys (ENSTRUG00000008436)	zfpm2a (ENSTRUG00000008754) ##22	ENSTRUG00000020895	oxr1b (ENSTRUG00000008898)	rnf144b (ENSTRUG00000009323)	ubr5 (ENSTRUG00000010399)	ENSTRUG00000010517	LAPTM4B (ENSTRUG00000010627)	MATN2 (ENSTRUG00000010697)	rida (ENSTRUG00000010847)	POP1 (ENSTRUG00000010856)	NIPAL2 (ENSTRUG00000023606)	KCNS2 (ENSTRUG00000011051)	osr2 (ENSTRUG00000011070)	VPS13B (ENSTRUG00000011132)	ENSTRUG00000011182	FBXO43 (ENSTRUG00000020193)
Tetraodon	MODERN SPECIES	23	usp45 (ENSTNIG00000014275)	pnisr (ENSTNIG00000014274)	coq3 (ENSTNIG00000007012)	FAXC (ENSTNIG00000007011)	ENSTNIG00000002829	ENSTNIG00000008221	mms22l (ENSTNIG00000008220)	klhl32 (ENSTNIG00000008219)	fzd6 (ENSTNIG00000008218)	CTHRC1 (ENSTNIG00000008217)	slc25a32b (ENSTNIG00000008216)	dcaf13 (ENSTNIG00000008215)	RIMS2 (ENSTNIG00000008214)	DCSTAMP (ENSTNIG00000008213)	dpys (ENSTNIG00000008212)	zfpm2a (ENSTNIG00000008211) ##22	ENSTNIG00000008210	oxr1b (ENSTNIG00000008209)	sqlea (ENSTNIG00000008208)	ENSTNIG00000008207	ENSTNIG00000008206	cxcr3.2 (ENSTNIG00000008205)	CXCR3 (ENSTNIG00000008204)	ENSTNIG00000008203	ENSTNIG00000008202	MEGF8 (ENSTNIG00000008201)	ENSTNIG00000008200	ENSTNIG00000008199	arhgef1b (ENSTNIG00000008198)	LIPE (ENSTNIG00000008197)	TMEM145 (ENSTNIG00000008196)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Ballan wrasse	MODERN SPECIES	3	pnisr (ENSLBEG00000002853)	coq3 (ENSLBEG00000002823)	FAXC (ENSLBEG00000002797)	fbxl4 (ENSLBEG00000002762)	pou3f2b (ENSLBEG00000002729)	ENSLBEG00000002688	mms22l (ENSLBEG00000002643)	klhl32 (ENSLBEG00000002581)	fzd6 (ENSLBEG00000002562)	CTHRC1 (ENSLBEG00000002525)	slc25a32b (ENSLBEG00000002486)	dcaf13 (ENSLBEG00000002441)	RIMS2 (ENSLBEG00000002144)	DCSTAMP (ENSLBEG00000002007)	dpys (ENSLBEG00000001970)	zfpm2a (ENSLBEG00000001892) ##22	ENSLBEG00000001852	oxr1b (ENSLBEG00000001776)	ENSLBEG00000001731	sqlea (ENSLBEG00000001655)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
European seabass	MODERN SPECIES	6	tstd3 (ENSDLAG00005027672)	pnisr (ENSDLAG00005008562)	FAXC (ENSDLAG00005008677)	fbxl4 (ENSDLAG00005008699)	pou3f2b (ENSDLAG00005030666)	ENSDLAG00005008764	mms22l (ENSDLAG00005008789)	klhl32 (ENSDLAG00005008815)	FZD6 (ENSDLAG00005008882)	CTHRC1 (ENSDLAG00005008893)	SLC25A32 (ENSDLAG00005008907)	dcaf13 (ENSDLAG00005008939)	RIMS2 (ENSDLAG00005009144)	DCSTAMP (ENSDLAG00005012907)	dpys (ENSDLAG00005012955)	zfpm2a (ENSDLAG00005013410) ##22	ENSDLAG00005013430	ENSDLAG00005013501	sqlea (ENSDLAG00005013813)	ENSDLAG00005030365	ENSDLAG00005014169	atp6v1c1a (ENSDLAG00005014247)	AZIN1 (ENSDLAG00005014375)	ENSDLAG00005031893	ubr5 (ENSDLAG00005004353)	ENSDLAG00005004832	LAPTM4B (ENSDLAG00005004888)	MATN2 (ENSDLAG00005004908)	RIDA (ENSDLAG00005005059)	POP1 (ENSDLAG00005005101)	NIPAL2 (ENSDLAG00005005111)
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005012103	COQ3 (ENSLCRG00005012131)	FAXC (ENSLCRG00005012135)	fbxl4 (ENSLCRG00005012146)	pou3f2b (ENSLCRG00005012148)	ENSLCRG00005012161	mms22l (ENSLCRG00005012200)	klhl32 (ENSLCRG00005012311)	fzd6 (ENSLCRG00005012362)	CTHRC1 (ENSLCRG00005012364)	slc25a32b (ENSLCRG00005012385)	dcaf13 (ENSLCRG00005012463)	RIMS2 (ENSLCRG00005012843)	DCSTAMP (ENSLCRG00005015432)	dpys (ENSLCRG00005015448)	zfpm2a (ENSLCRG00005015466) ##22	ENSLCRG00005015489	oxr1b (ENSLCRG00005015571)	sqlea (ENSLCRG00005015687)	rnf144b (ENSLCRG00005015719)	ENSLCRG00005015735	ENSLCRG00005015746	atp6v1c1a (ENSLCRG00005015803)	azin1a (ENSLCRG00005015829)	ENSLCRG00005015850	ubr5 (ENSLCRG00005015962)	ENSLCRG00005016293	LAPTM4B (ENSLCRG00005016308)	MATN2 (ENSLCRG00005016318)	rida (ENSLCRG00005016328)	POP1 (ENSLCRG00005016340)
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010012799	coq3 (ENSSAUG00010012797)	FAXC (ENSSAUG00010012795)	fbxl4 (ENSSAUG00010012793)	pou3f2b (ENSSAUG00010012791)	ENSSAUG00010012784	mms22l (ENSSAUG00010012777)	klhl32 (ENSSAUG00010012765)	fzd6 (ENSSAUG00010012758)	CTHRC1 (ENSSAUG00010012755)	slc25a32b (ENSSAUG00010012752)	dcaf13 (ENSSAUG00010012748)	RIMS2 (ENSSAUG00010011037)	DCSTAMP (ENSSAUG00010011002)	dpys (ENSSAUG00010010789)	zfpm2a (ENSSAUG00010010772) ##22	ENSSAUG00010010765	oxr1b (ENSSAUG00010010735)	sqlea (ENSSAUG00010010021)	rnf144b (ENSSAUG00010010013)	ENSSAUG00010010011	ENSSAUG00010009998	atp6v1c1a (ENSSAUG00010009948)	azin1a (ENSSAUG00010009917)	ENSSAUG00010009903	ubr5 (ENSSAUG00010009851)	ENSSAUG00010009842	LAPTM4B (ENSSAUG00010009838)	MATN2 (ENSSAUG00010009835)	rida (ENSSAUG00010009834)	POP1 (ENSSAUG00010009832)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Cottioidei	ANCESTRAL SPECIES	29	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000154181.b.a	ENSGT00940000156357	ENSGT00940000159405	ENSGT00950000182995.e.b.ab	ENSGT00390000004263.a.d.a	ENSGT00390000003058.b.a.a.a.b	ENSGT00940000158819	ENSGT00390000017094	ENSGT00940000157845	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00950000183155.a.b.a.b
Lumpfish	MODERN SPECIES	17	coq3 (ENSCLMG00005011528)	FAXC (ENSCLMG00005011522)	fbxl4 (ENSCLMG00005011518)	pou3f2b (ENSCLMG00005011512)	mms22l (ENSCLMG00005011503)	klhl32 (ENSCLMG00005011495)	fzd6 (ENSCLMG00005019083)	CTHRC1 (ENSCLMG00005019082)	slc25a32b (ENSCLMG00005019081)	dcaf13 (ENSCLMG00005019071)	ENSCLMG00005019070	ENSCLMG00005019069	ENSCLMG00005019068	DCSTAMP (ENSCLMG00005019067)	dpys (ENSCLMG00005019065)	zfpm2a (ENSCLMG00005019064) ##22	ENSCLMG00005019062	oxr1b (ENSCLMG00005019019)	sqlea (ENSCLMG00005019016)	ENSCLMG00005019012	ubr5 (ENSCLMG00005014152)	ENSCLMG00005014115	azin1a (ENSCLMG00005014108)	atp6v1c1a (ENSCLMG00005013987)	ENSCLMG00005013982	rnf144b (ENSCLMG00005013981)	NOD1 (ENSCLMG00005013964)	enpp2 (ENSCLMG00005013915)	taf2 (ENSCLMG00005013505)	ENSCLMG00005013470	ENSCLMG00005013469
Stickleback	MODERN SPECIES	19	usp45 (ENSGACG00000005006)	pnisr (ENSGACG00000004989)	coq3 (ENSGACG00000004983)	FAXC (ENSGACG00000004979)	fbxl4 (ENSGACG00000004972)	pou3f2b (ENSGACG00000004969)	mms22l (ENSGACG00000004958)	klhl32 (ENSGACG00000004946)	fzd6 (ENSGACG00000004932)	CTHRC1 (ENSGACG00000004928)	slc25a32b (ENSGACG00000004881)	dcaf13 (ENSGACG00000004840)	RIMS2 (ENSGACG00000004824)	DCSTAMP (ENSGACG00000004814)	dpys (ENSGACG00000004785)	zfpm2a (ENSGACG00000004783) ##22	ENSGACG00000004775	oxr1b (ENSGACG00000004766)	sqlea (ENSGACG00000004743)	ENSGACG00000004720	ubr5 (ENSGACG00000004642)	KLF10 (ENSGACG00000004632)	azin1a (ENSGACG00000004621)	atp6v1c1a (ENSGACG00000004615)	ENSGACG00000004577	rnf144b (ENSGACG00000004550)	ENSGACG00000004518	NOD1 (ENSGACG00000004511)	enpp2 (ENSGACG00000004492)	taf2 (ENSGACG00000004480)	ENSGACG00000004478
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000157719	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00730000111263	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Pike perch	MODERN SPECIES	40	usp45 (ENSSLUG00000022689)	pnisr (ENSSLUG00000022724)	coq3 (ENSSLUG00000022752)	FAXC (ENSSLUG00000022758)	fbxl4 (ENSSLUG00000022763)	ENSSLUG00000022774	mms22l (ENSSLUG00000022784)	klhl32 (ENSSLUG00000022792)	fzd6 (ENSSLUG00000022824)	CTHRC1 (ENSSLUG00000022829)	slc25a32b (ENSSLUG00000022850)	dcaf13 (ENSSLUG00000022879)	RIMS2 (ENSSLUG00000022943)	DCSTAMP (ENSSLUG00000023593)	dpys (ENSSLUG00000023606)	zfpm2a (ENSSLUG00000023635) ##22	ENSSLUG00000023640	oxr1b (ENSSLUG00000023661)	sqlea (ENSSLUG00000023716)	rnf144b (ENSSLUG00000023892)	ENSSLUG00000006140	atp6v1c1a (ENSSLUG00000006176)	AZIN1 (ENSSLUG00000006230)	ENSSLUG00000006242	ubr5 (ENSSLUG00000006281)	ENSSLUG00000006459	LAPTM4B (ENSSLUG00000006470)	MATN2 (ENSSLUG00000006481)	rida (ENSSLUG00000006497)	POP1 (ENSSLUG00000006514)	NIPAL2 (ENSSLUG00000006526)
Channel bull blenny	MODERN SPECIES	7	pnisr (ENSCGOG00000011202)	coq3 (ENSCGOG00000011374)	FAXC (ENSCGOG00000011376)	fbxl4 (ENSCGOG00000011395)	pou3f2b (ENSCGOG00000011445)	mms22l (ENSCGOG00000011449)	klhl32 (ENSCGOG00000011501)	fzd6 (ENSCGOG00000011606)	CTHRC1 (ENSCGOG00000011609)	slc25a32b (ENSCGOG00000011615)	dcaf13 (ENSCGOG00000011647)	RIMS2 (ENSCGOG00000011800)	DCSTAMP (ENSCGOG00000013801)	dpys (ENSCGOG00000013805)	ENSCGOG00000013810	zfpm2a (ENSCGOG00000013811) ##22	ENSCGOG00000013812	oxr1b (ENSCGOG00000013838)	sqlea (ENSCGOG00000014698)	ENSCGOG00000014878	rnf144b (ENSCGOG00000014880)	ENSCGOG00000014881	ENSCGOG00000014883	ATP6V1C1 (ENSCGOG00000014890)	azin1a (ENSCGOG00000015602)	ENSCGOG00000015624	ENSCGOG00000016235	ENSCGOG00000016242	LAPTM4B (ENSCGOG00000016246)	MATN2 (ENSCGOG00000016249)	ENSCGOG00000016257
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Pomacentridae	ANCESTRAL SPECIES	23	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Pomacentridae_A	ANCESTRAL SPECIES	36	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Amphiprion	ANCESTRAL SPECIES	90	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759
Clown anemonefish	MODERN SPECIES	2041														ENSAOCG00000003984	dpys (ENSAOCG00000003990)	zfpm2a (ENSAOCG00000000117) ##22	ENSAOCG00000004008
Orange clownfish	MODERN SPECIES	21	mms22l (ENSAPEG00000020982)	klhl32 (ENSAPEG00000021051)	fzd6 (ENSAPEG00000021102)	CTHRC1 (ENSAPEG00000021113)	slc25a32b (ENSAPEG00000021127)	dcaf13 (ENSAPEG00000021156)	ENSAPEG00000021182	ENSAPEG00000021255	DCSTAMP (ENSAPEG00000021270)	dpys (ENSAPEG00000021338)	ENSAPEG00000021690	ENSAPEG00000021712	ENSAPEG00000021729	DCSTAMP (ENSAPEG00000021782)	dpys (ENSAPEG00000021792)	zfpm2a (ENSAPEG00000021820) ##22	ENSAPEG00000021844	oxr1b (ENSAPEG00000021874)	sqlea (ENSAPEG00000021928)	ENSAPEG00000021950	ENSAPEG00000021968	ENSAPEG00000021975	rbm12bb (ENSAPEG00000022079)	ENSAPEG00000022115	upp1 (ENSAPEG00000022138)	stmn2b (ENSAPEG00000022163)	HEY1 (ENSAPEG00000022181)	fam8a1b (ENSAPEG00000022206)	ATXN1 (ENSAPEG00000022436)	ITGA8 (ENSAPEG00000022470)	mindy3 (ENSAPEG00000022645)
Spiny chromis	MODERN SPECIES	21	ENSAPOG00000018442	coq3 (ENSAPOG00000018453)	FAXC (ENSAPOG00000018489)	fbxl4 (ENSAPOG00000018556)	pou3f2b (ENSAPOG00000018566)	ENSAPOG00000018592	mms22l (ENSAPOG00000018700)	klhl32 (ENSAPOG00000018759)	fzd6 (ENSAPOG00000018807)	CTHRC1 (ENSAPOG00000018831)	slc25a32b (ENSAPOG00000018860)	dcaf13 (ENSAPOG00000000524)	RIMS2 (ENSAPOG00000019006)	ENSAPOG00000019027	dpys (ENSAPOG00000019078)	zfpm2a (ENSAPOG00000019134) ##22	ENSAPOG00000019203
Bicolor damselfish	MODERN SPECIES	382					fbxl4 (ENSSPAG00000019738)	pou3f2b (ENSSPAG00000019757)	mms22l (ENSSPAG00000019781)	klhl32 (ENSSPAG00000019819)	fzd6 (ENSSPAG00000019835)	CTHRC1 (ENSSPAG00000019847)	slc25a32b (ENSSPAG00000019864)	dcaf13 (ENSSPAG00000019890)	RIMS2 (ENSSPAG00000019908)	DCSTAMP (ENSSPAG00000019950)	dpys (ENSSPAG00000019963)	zfpm2a (ENSSPAG00000019997) ##22	ENSSPAG00000020018	oxr1b (ENSSPAG00000020063)	sqlea (ENSSPAG00000020106)
Cichlidae	ANCESTRAL SPECIES	26	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT01020000230438.A.e.a.m.b.a.c.a	ENSGT01020000230438.A.e.a.m.b.a.c.b	ENSGT01020000230438.A.e.a.m.a.a.a	ENSGT01020000230438.A.e.a.m.a.a.b	ENSGT01050000244883.A.a.b	ENSGT00390000010337.A	ENSGT00940000170150	ENSGT00950000182952.E	ENSGT00950000182904.a.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000169325	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT01020000230438.A.e.a.m.b.a.c.a	ENSGT01020000230438.A.e.a.m.b.a.c.b	ENSGT01020000230438.A.e.a.m.a.b	ENSGT01020000230438.A.e.a.m.a.a.b.b	ENSGT01020000230438.A.e.a.n.a	ENSGT01020000230438.A.e.a.m.a.a.a	ENSGT01020000230438.A.e.a.m.a.a.b.a	ENSGT01050000244883.A.a.b	ENSGT00390000010337.A
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000169325	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT01020000230438.A.e.a.m.b.a.c.a	ENSGT01020000230438.A.e.a.m.b.a.c.b	ENSGT01020000230438.A.e.a.m.a.b	ENSGT01020000230438.A.e.a.m.a.a.b.b	ENSGT01020000230438.A.e.a.n.a	ENSGT01020000230438.A.e.a.m.a.a.a	ENSGT01020000230438.A.e.a.m.a.a.b.a	ENSGT01050000244883.A.a.b	ENSGT00390000010337.A
Burton s mouthbrooder	MODERN SPECIES	333	coq3 (ENSHBUG00000015558)	FAXC (ENSHBUG00000015567)	fbxl4 (ENSHBUG00000015590)	pou3f2b (ENSHBUG00000015593)	si:ch211-198c19.1 (ENSHBUG00000015606)	ENSHBUG00000015645	mms22l (ENSHBUG00000015668)	klhl32 (ENSHBUG00000015706)	fzd6 (ENSHBUG00000015721)	CTHRC1 (ENSHBUG00000015738)	slc25a32b (ENSHBUG00000015762)	dcaf13 (ENSHBUG00000015794)	RIMS2 (ENSHBUG00000016190)	DCSTAMP (ENSHBUG00000016244)	dpys (ENSHBUG00000016269)	zfpm2a (ENSHBUG00000016317) ##22	ENSHBUG00000016432	oxr1b (ENSHBUG00000016492)	sqlea (ENSHBUG00000016553)	rnf144b (ENSHBUG00000016586)	ENSHBUG00000016595	ENSHBUG00000016746	ENSHBUG00000016781	ENSHBUG00000016797	ENSHBUG00000016803	ENSHBUG00000016820	ENSHBUG00000016834	ENSHBUG00000016847	ENSHBUG00000016863	ENSHBUG00000016868	ENSHBUG00000016878
Haplochromini_A	ANCESTRAL SPECIES	58	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00940000169325	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT01020000230438.A.e.a.m.b.a.c.a	ENSGT01020000230438.A.e.a.m.b.a.c.b	ENSGT01020000230438.A.e.a.m.a.b	ENSGT01020000230438.A.e.a.m.a.a.b.b	ENSGT01020000230438.A.e.a.n.a	ENSGT01020000230438.A.e.a.m.a.a.a	ENSGT01020000230438.A.e.a.m.a.a.b.a	ENSGT01050000244883.A.a.b	ENSGT00390000010337.A	ENSGT00940000170150
P. nyererei	MODERN SPECIES	404	coq3 (ENSPNYG00000004234)	FAXC (ENSPNYG00000004225)	ENSPNYG00000004214	fbxl4 (ENSPNYG00000004182)	pou3f2b (ENSPNYG00000004152)	si:ch211-198c19.1 (ENSPNYG00000004126)	mms22l (ENSPNYG00000004048)	klhl32 (ENSPNYG00000004001)	fzd6 (ENSPNYG00000003984)	CTHRC1 (ENSPNYG00000003961)	slc25a32b (ENSPNYG00000003923)	dcaf13 (ENSPNYG00000003861)	RIMS2 (ENSPNYG00000003799)	ENSPNYG00000003770	dpys (ENSPNYG00000003738)	zfpm2a (ENSPNYG00000003709) ##22	ENSPNYG00000003653	oxr1b (ENSPNYG00000003587)	sqlea (ENSPNYG00000003531)	rnf144b (ENSPNYG00000003514)	ENSPNYG00000003475	ENSPNYG00000003457	ENSPNYG00000003449	ENSPNYG00000003433	ENSPNYG00000003417	ENSPNYG00000003402	ENSPNYG00000003375	ENSPNYG00000003366	ENSPNYG00000003359	has1 (ENSPNYG00000003272)	ENSPNYG00000003245
Haplochromini_B	ANCESTRAL SPECIES	42	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00940000169325	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT01020000230438.A.e.a.m.b.a.c.a	ENSGT01020000230438.A.e.a.m.b.a.c.b	ENSGT01020000230438.A.e.a.m.a.b	ENSGT01020000230438.A.e.a.m.a.a.b.b	ENSGT01020000230438.A.e.a.n.a	ENSGT01020000230438.A.e.a.m.a.a.a	ENSGT01020000230438.A.e.a.m.a.a.b.a	ENSGT01050000244883.A.a.b	ENSGT00390000010337.A	ENSGT00940000170150
Zebra mbuna	MODERN SPECIES	1093	pnisr (ENSMZEG00005011871)	coq3 (ENSMZEG00005011886)	FAXC (ENSMZEG00005011899)	fbxl4 (ENSMZEG00005011913)	pou3f2b (ENSMZEG00005011933)	si:ch211-198c19.1 (ENSMZEG00005011948)	mms22l (ENSMZEG00005011959)	klhl32 (ENSMZEG00005012008)	fzd6 (ENSMZEG00005012202)	CTHRC1 (ENSMZEG00005012225)	slc25a32b (ENSMZEG00005012238)	dcaf13 (ENSMZEG00005012249)	RIMS2 (ENSMZEG00005012268)	DCSTAMP (ENSMZEG00005012314)	dpys (ENSMZEG00005012323)	zfpm2a (ENSMZEG00005012352) ##22	ENSMZEG00005012373	oxr1b (ENSMZEG00005012415)	sqlea (ENSMZEG00005012473)	rnf144b (ENSMZEG00005012496)	ENSMZEG00005012525	ENSMZEG00005012595	ENSMZEG00005012599	ENSMZEG00005012609	ENSMZEG00005012619	ENSMZEG00005012634	ENSMZEG00005012640	ENSMZEG00005012649	has1 (ENSMZEG00005012656)	ENSMZEG00005012677	ENSMZEG00005012685
Eastern happy	MODERN SPECIES	2	pnisr (ENSACLG00000024847)	FAXC (ENSACLG00000024920)	fbxl4 (ENSACLG00000024925)	pou3f2b (ENSACLG00000024941)	ENSACLG00000025000	si:ch211-198c19.1 (ENSACLG00000025028)	mms22l (ENSACLG00000025040)	klhl32 (ENSACLG00000025111)	fzd6 (ENSACLG00000025172)	CTHRC1 (ENSACLG00000025186)	slc25a32b (ENSACLG00000025194)	dcaf13 (ENSACLG00000025212)	RIMS2 (ENSACLG00000025228)	ENSACLG00000025279	dpys (ENSACLG00000025289)	zfpm2a (ENSACLG00000025322) ##22	ENSACLG00000025368	oxr1b (ENSACLG00000025410)	ENSACLG00000025576	sqlea (ENSACLG00000025578)	rnf144b (ENSACLG00000025601)	ENSACLG00000025611	ENSACLG00000025616	ENSACLG00000025697	ENSACLG00000025708	ENSACLG00000025709	ENSACLG00000025711	ENSACLG00000025713	ENSACLG00000025718	ENSACLG00000025734	ENSACLG00000025738
Lyretail cichlid	MODERN SPECIES	324	pnisr (ENSNBRG00000007462)	coq3 (ENSNBRG00000007451)	FAXC (ENSNBRG00000007425)	fbxl4 (ENSNBRG00000007390)	pou3f2b (ENSNBRG00000007370)	si:ch211-198c19.1 (ENSNBRG00000007357)	mms22l (ENSNBRG00000007235)	klhl32 (ENSNBRG00000007202)	fzd6 (ENSNBRG00000007159)	CTHRC1 (ENSNBRG00000007111)	slc25a32b (ENSNBRG00000007084)	dcaf13 (ENSNBRG00000007078)	RIMS2 (ENSNBRG00000007014)	DCSTAMP (ENSNBRG00000006993)	dpys (ENSNBRG00000006959)	zfpm2a (ENSNBRG00000006933) ##22	ENSNBRG00000006913	oxr1b (ENSNBRG00000006836)	sqlea (ENSNBRG00000006785)	rnf144b (ENSNBRG00000006758)	ENSNBRG00000006553	ENSNBRG00000006535	ENSNBRG00000006523	ENSNBRG00000006498	ENSNBRG00000006486	ENSNBRG00000006461	ENSNBRG00000006442	has1 (ENSNBRG00000006427)	ENSNBRG00000006413	ENSNBRG00000006378	ENSNBRG00000006368
Nile tilapia	MODERN SPECIES	2	coq3 (ENSONIG00000000124)	FAXC (ENSONIG00000000125)	fbxl4 (ENSONIG00000000127)	pou3f2b (ENSONIG00000036392)	ENSONIG00000039779	mms22l (ENSONIG00000000128)	klhl32 (ENSONIG00000000130)	fzd6 (ENSONIG00000000135)	CTHRC1 (ENSONIG00000027580)	CTHRC1 (ENSONIG00000000137)	slc25a32b (ENSONIG00000000139)	dcaf13 (ENSONIG00000000142)	RIMS2 (ENSONIG00000000143)	DCSTAMP (ENSONIG00000000149)	dpys (ENSONIG00000000150)	zfpm2a (ENSONIG00000000152) ##22	ENSONIG00000028153	oxr1b (ENSONIG00000000154)	sqlea (ENSONIG00000000161)	rnf144b (ENSONIG00000000163)	ENSONIG00000000164	ENSONIG00000027599	ENSONIG00000000170	ENSONIG00000035869	ENSONIG00000040948	ENSONIG00000011906	ENSONIG00000007955	ENSONIG00000032853	ENSONIG00000038077	ENSONIG00000007957	ENSONIG00000007958
Midas cichlid	MODERN SPECIES	549	pnisr (ENSACIG00000002838)	coq3 (ENSACIG00000002855)	FAXC (ENSACIG00000002896)	fbxl4 (ENSACIG00000002915)	pou3f2b (ENSACIG00000002939)	si:ch211-198c19.1 (ENSACIG00000002951)	mms22l (ENSACIG00000002978)	klhl32 (ENSACIG00000003031)	fzd6 (ENSACIG00000003051)	CTHRC1 (ENSACIG00000003072)	slc25a32b (ENSACIG00000003090)	dcaf13 (ENSACIG00000003110)	RIMS2 (ENSACIG00000003142)	ENSACIG00000003201	dpys (ENSACIG00000003210)	zfpm2a (ENSACIG00000003230) ##22	ENSACIG00000003255	oxr1b (ENSACIG00000003285)	sqlea (ENSACIG00000003320)	rnf144b (ENSACIG00000003360)	ENSACIG00000003382	ENSACIG00000003419	atp6v1c1a (ENSACIG00000003433)	azin1a (ENSACIG00000003639)	ENSACIG00000003767	ubr5 (ENSACIG00000003786)	ENSACIG00000003943	LAPTM4B (ENSACIG00000003966)	MATN2 (ENSACIG00000004026)	rida (ENSACIG00000004145)	POP1 (ENSACIG00000004169)
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Oryzias	ANCESTRAL SPECIES	66																ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357.u	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478	ENSGT00940000159321
Oryzias_a	ANCESTRAL SPECIES	38																ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357.u	ENSGT00940000156357.v	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Japanese Medaka HdrR	MODERN SPECIES	7	TCAIM (ENSORLG00000003521)	ggctb (ENSORLG00000028231)	SLC6A20 (ENSORLG00000003493)	sacm1lb (ENSORLG00000003459)	ppox (ENSORLG00000003428)	dyrk1b (ENSORLG00000003415)	fbl (ENSORLG00000003405)	ENSORLG00000023592	ENSORLG00000003387	preb (ENSORLG00000003344)	fam210ab (ENSORLG00000003330)	ldlrad4b (ENSORLG00000003324)	ENSORLG00000030396	ENSORLG00000003313	seh1l (ENSORLG00000003280)	zfpm2a (ENSORLG00000003240) ##22	ENSORLG00000030284	ENSORLG00000025015	ENSORLG00000029240	ENSORLG00000025332	ENSORLG00000003232	sqlea (ENSORLG00000003196)	rnf144b (ENSORLG00000003166)	oxr1b (ENSORLG00000003220)	ENSORLG00000003158	atp6v1c1a (ENSORLG00000003111)	azin1a (ENSORLG00000003069)	ENSORLG00000003025	ubr5 (ENSORLG00000003009)	ENSORLG00000002933	LAPTM4B (ENSORLG00000002899)
Chinese medaka	MODERN SPECIES	439																zfpm2a (ENSOSIG00000006653) ##22
Oryzias_b	ANCESTRAL SPECIES	84																ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357.u	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478	ENSGT00940000159321
Indian medaka	MODERN SPECIES	5	ENSOMEG00000008059	SRF (ENSOMEG00000008044)	eif4a3 (ENSOMEG00000007998)	soul4 (ENSOMEG00000007952)	tmem178a (ENSOMEG00000007927)	sos1 (ENSOMEG00000007891)	ENSOMEG00000007793	ENSOMEG00000007784	ENSOMEG00000007774	SLC29A1 (ENSOMEG00000007755)	ENSOMEG00000007700	ENSOMEG00000007685	ENSOMEG00000007679	ENSOMEG00000007672	ENSOMEG00000007650	zfpm2a (ENSOMEG00000007591) ##22	ENSOMEG00000007508	oxr1b (ENSOMEG00000007395)	sqlea (ENSOMEG00000007200)	rnf144b (ENSOMEG00000007140)	ENSOMEG00000007105	ENSOMEG00000007004	rida (ENSOMEG00000006978)	POP1 (ENSOMEG00000006915)	NIPAL2 (ENSOMEG00000006875)	KCNS2 (ENSOMEG00000006854)	osr2 (ENSOMEG00000006838)	ENSOMEG00000006821	ENSOMEG00000000703	gprc6a (ENSOMEG00000006801)	ptpn2a (ENSOMEG00000006761)
Javanese ricefish	DUPLICATION
Javanese ricefish	MODERN SPECIES	7	ldlrad4b (ENSOJAG00000013076)	seh1l (ENSOJAG00000012906)	ggctb (ENSOJAG00000012781)	SLC6A20 (ENSOJAG00000012754)	sacm1lb (ENSOJAG00000012562)	ppox (ENSOJAG00000012508)	dyrk1b (ENSOJAG00000012174)	fbl (ENSOJAG00000012144)	rbm42 (ENSOJAG00000012125)	preb (ENSOJAG00000012072)	ENSOJAG00000012064	ENSOJAG00000012054	rrp15 (ENSOJAG00000012024)	ENSOJAG00000012015 ##22	ENSOJAG00000011992	zfpm2a (ENSOJAG00000011906) ##22	ENSOJAG00000011845	ENSOJAG00000011743	oxr1b (ENSOJAG00000010887)	sqlea (ENSOJAG00000010307)	ENSOJAG00000010245	ENSOJAG00000010225	ENSOJAG00000010182	rnf144b (ENSOJAG00000010170)	ZNF622 (ENSOJAG00000010128)	ENSOJAG00000010117	atp6v1c1a (ENSOJAG00000009889)	azin1a (ENSOJAG00000009830)	ENSOJAG00000009806	ENSOJAG00000005787	LAPTM4B (ENSOJAG00000005771)
Javanese ricefish	MODERN SPECIES	7	fam210ab (ENSOJAG00000013094)	ENSOJAG00000013085	ldlrad4b (ENSOJAG00000013076)	seh1l (ENSOJAG00000012906)	ggctb (ENSOJAG00000012781)	SLC6A20 (ENSOJAG00000012754)	sacm1lb (ENSOJAG00000012562)	ppox (ENSOJAG00000012508)	dyrk1b (ENSOJAG00000012174)	fbl (ENSOJAG00000012144)	rbm42 (ENSOJAG00000012125)	preb (ENSOJAG00000012072)	ENSOJAG00000012064	ENSOJAG00000012054	rrp15 (ENSOJAG00000012024)	ENSOJAG00000012015 ##22	ENSOJAG00000011992	zfpm2a (ENSOJAG00000011906) ##22	ENSOJAG00000011845	ENSOJAG00000011743	oxr1b (ENSOJAG00000010887)	sqlea (ENSOJAG00000010307)	ENSOJAG00000010245	ENSOJAG00000010225	ENSOJAG00000010182	rnf144b (ENSOJAG00000010170)	ZNF622 (ENSOJAG00000010128)	ENSOJAG00000010117	atp6v1c1a (ENSOJAG00000009889)	azin1a (ENSOJAG00000009830)	ENSOJAG00000009806
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
Aplocheiloidei	ANCESTRAL SPECIES	26	ENSGT00940000157719	ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00390000011769	ENSGT00940000157179.d	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B.j	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478	ENSGT00940000159321
Mangrove rivulus	MODERN SPECIES	24	usp45 (ENSKMAG00000002811)	ENSKMAG00000002755	coq3 (ENSKMAG00000002723)	FAXC (ENSKMAG00000002701)	fbxl4 (ENSKMAG00000002662)	pou3f2b (ENSKMAG00000002640)	mms22l (ENSKMAG00000002559)	klhl32 (ENSKMAG00000002474)	fzd6 (ENSKMAG00000002450)	CTHRC1 (ENSKMAG00000002403)	slc25a32b (ENSKMAG00000002412)	dcaf13 (ENSKMAG00000002350)	RIMS2 (ENSKMAG00000002239)	DCSTAMP (ENSKMAG00000002217)	dpys (ENSKMAG00000002165)	zfpm2a (ENSKMAG00000002098) ##22	ENSKMAG00000002079	oxr1b (ENSKMAG00000001945)	sqlea (ENSKMAG00000001880)	rnf144b (ENSKMAG00000001835)	ENSKMAG00000001806	atp6v1c1a (ENSKMAG00000001755)	azin1a (ENSKMAG00000001732)	ENSKMAG00000001692	ubr5 (ENSKMAG00000001452)	ENSKMAG00000001420	LAPTM4B (ENSKMAG00000001399)	MATN2 (ENSKMAG00000001389)	ENSKMAG00000001378	rida (ENSKMAG00000001365)	POP1 (ENSKMAG00000001346)
Turquoise killifish	MODERN SPECIES	1614	zgc:172323 (ENSNFUG00015016674)	PRDM13 (ENSNFUG00015016670)	ENSNFUG00015016663	DOP1A (ENSNFUG00015016639)	pnisr (ENSNFUG00015016621)	ENSNFUG00015016611	FZD6 (ENSNFUG00015016606)	CTHRC1 (ENSNFUG00015016597)	SLC25A32 (ENSNFUG00015016582)	dcaf13 (ENSNFUG00015016551)	RIMS2 (ENSNFUG00015015210)	DCSTAMP (ENSNFUG00015015067)	ENSNFUG00015015063	dpys (ENSNFUG00015014287)	ENSNFUG00015014232	ZFPM2A (ENSNFUG00015014222) ##22	ENSNFUG00015014215	ENSNFUG00015014210	ENSNFUG00015014205	ENSNFUG00015014201	ENSNFUG00015014183	ENSNFUG00015014169	sqlea (ENSNFUG00015013380)	atp6v1c1a (ENSNFUG00015013291)	AZIN1A (ENSNFUG00015013283)	ubr5 (ENSNFUG00015009582)	ENSNFUG00015009387	ENSNFUG00015009383	LAPTM4B (ENSNFUG00015009371)	KCNS2 (ENSNFUG00015009346)	ENSNFUG00015009333
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a
NAME_4	ANCESTRAL SPECIES	42	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236.y	ENSGT00940000155236.x	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000003058.b.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Mummichog	MODERN SPECIES	2307	usp45 (ENSFHEG00000009712)	ENSFHEG00000009728	coq3 (ENSFHEG00000009736)	FAXC (ENSFHEG00000009746)	fbxl4 (ENSFHEG00000009772)	pou3f2b (ENSFHEG00000009795)	mms22l (ENSFHEG00000009815)	klhl32 (ENSFHEG00000009865)	fzd6 (ENSFHEG00000009897)	CTHRC1 (ENSFHEG00000009912)	slc25a32b (ENSFHEG00000009947)	dcaf13 (ENSFHEG00000009965)	RIMS2 (ENSFHEG00000010025)	DCSTAMP (ENSFHEG00000010042)	dpys (ENSFHEG00000010088)	zfpm2a (ENSFHEG00000010125) ##22	ENSFHEG00000010205	oxr1b (ENSFHEG00000010285)	sqlea (ENSFHEG00000010343)	rnf144b (ENSFHEG00000010350)	ENSFHEG00000010414
Sheepshead minnow	MODERN SPECIES	666													ENSCVAG00000009410	DCSTAMP (ENSCVAG00000009422)	dpys (ENSCVAG00000009461)	zfpm2a (ENSCVAG00000009516) ##22	ENSCVAG00000009577
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000174563	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357.t	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008	ENSGT00420000029792.qb.a	ENSGT00390000017478
Platyfish	MODERN SPECIES	17	ENSXMAG00000004128	coq3 (ENSXMAG00000004124)	FAXC (ENSXMAG00000004109)	ENSXMAG00000028940	fbxl4 (ENSXMAG00000004098)	pou3f2b (ENSXMAG00000023537)	mms22l (ENSXMAG00000004070)	klhl32 (ENSXMAG00000004046)	fzd6 (ENSXMAG00000004034)	CTHRC1 (ENSXMAG00000027269)	slc25a32b (ENSXMAG00000004016)	dcaf13 (ENSXMAG00000026809)	RIMS2 (ENSXMAG00000003924)	DCSTAMP (ENSXMAG00000003920)	dpys (ENSXMAG00000003904)	zfpm2a (ENSXMAG00000003403) ##22	ENSXMAG00000022219	oxr1b (ENSXMAG00000003868)	sqlea (ENSXMAG00000003411)	rnf144b (ENSXMAG00000022380)	ENSXMAG00000002369	atp6v1c1a (ENSXMAG00000002385)	azin1a (ENSXMAG00000002403)	ENSXMAG00000002425	ubr5 (ENSXMAG00000002429)	ENSXMAG00000011490	LAPTM4B (ENSXMAG00000003242)	MATN2 (ENSXMAG00000003255)	rida (ENSXMAG00000028764)	POP1 (ENSXMAG00000002472)	NIPAL2 (ENSXMAG00000021565)
Poecilia	ANCESTRAL SPECIES		ENSGT01060000248664	ENSGT00390000007284	ENSGT00950000182919.A.o	ENSGT00940000155184	ENSGT00940000162208.`c.a	ENSGT00940000166515	ENSGT00390000011769	ENSGT00940000157179	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357.t	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008.f.b	ENSGT00940000158008.f.a	ENSGT00420000029792.qb.a
Guppy	MODERN SPECIES	446	ENSPREG00000015742	coq3 (ENSPREG00000015754)	FAXC (ENSPREG00000015777)	fbxl4 (ENSPREG00000015790)	pou3f2b (ENSPREG00000015810)	ENSPREG00000015830	mms22l (ENSPREG00000015862)	klhl32 (ENSPREG00000015899)	fzd6 (ENSPREG00000015969)	CTHRC1 (ENSPREG00000016010)	slc25a32b (ENSPREG00000016034)	dcaf13 (ENSPREG00000016063)	RIMS2 (ENSPREG00000016096)	DCSTAMP (ENSPREG00000016152)	dpys (ENSPREG00000016163)	zfpm2a (ENSPREG00000016198) ##22	ENSPREG00000016243	oxr1b (ENSPREG00000016303)	sqlea (ENSPREG00000016354)	rnf144b (ENSPREG00000016377)	ENSPREG00000016409	atp6v1c1a (ENSPREG00000016458)	AZIN1 (ENSPREG00000016481)	ENSPREG00000016506	ubr5 (ENSPREG00000016584)	ENSPREG00000016898	ENSPREG00000016922	MATN2 (ENSPREG00000016949)	rnf115a (ENSPREG00000017007)	polr3c (ENSPREG00000017050)	ITGA10 (ENSPREG00000017097)
NAME_6	ANCESTRAL SPECIES	90																ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00940000171948	ENSGT00390000003058.b.a.a.a.b	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357.t	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008.f.b	ENSGT00940000158008.f.a	ENSGT00420000029792.qb.a
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	288															ENSPFOG00000024245 ##22	zfpm2a (ENSPFOG00000014002) ##22	ENSPFOG00000013991	oxr1b (ENSPFOG00000013923)	sqlea (ENSPFOG00000013812)	rnf144b (ENSPFOG00000013745)	ENSPFOG00000024451	ENSPFOG00000013559	atp6v1c1a (ENSPFOG00000013503)	atp6v1c1a (ENSPFOG00000013442)	azin1 (ENSPFOG00000013348)	ENSPFOG00000013334	ubr5 (ENSPFOG00000012957)	ENSPFOG00000012897	LAPTM4B (ENSPFOG00000012856)	MATN2 (ENSPFOG00000012704)	rida (ENSPFOG00000012640)
Amazon molly	MODERN SPECIES	288																ENSPFOG00000024245 ##22	zfpm2a (ENSPFOG00000014002) ##22	ENSPFOG00000013991	oxr1b (ENSPFOG00000013923)	sqlea (ENSPFOG00000013812)	rnf144b (ENSPFOG00000013745)	ENSPFOG00000024451	ENSPFOG00000013559	atp6v1c1a (ENSPFOG00000013503)	atp6v1c1a (ENSPFOG00000013442)	azin1 (ENSPFOG00000013348)	ENSPFOG00000013334	ubr5 (ENSPFOG00000012957)	ENSPFOG00000012897	LAPTM4B (ENSPFOG00000012856)	MATN2 (ENSPFOG00000012704)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1381																zfpm2a (ENSPLAG00000014386) ##22	ENSPLAG00000014390
Sailfin molly	MODERN SPECIES	1296																ENSPLAG00000015174 ##22
Protacanthopterygii	ANCESTRAL SPECIES	91	ENSGT00940000157775	ENSGT00530000067342	ENSGT00390000011918	ENSGT00940000163587.b	ENSGT00390000005284.b	ENSGT00940000161757	ENSGT00940000154370.d	ENSGT00560000077232.A.a	ENSGT00940000159733	ENSGT00940000158047	ENSGT00940000156904.a.b	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b	ENSGT00990000204549	ENSGT00390000004263.a.d.a	ENSGT00950000182995.e.b.ab	ENSGT00940000159405	ENSGT00940000156357	ENSGT00940000154181.b.a	ENSGT00940000153446.a.a.w.a	ENSGT00390000000358.y	ENSGT00940000157815.a	ENSGT00390000018131
Northern pike	MODERN SPECIES	19	abhd16a (ENSELUG00000006643)	vars1 (ENSELUG00000006550)	ENSELUG00000006492	ino80e (ENSELUG00000006479)	ENSELUG00000006463	ENSELUG00000006452	ENSELUG00000030380	flot1b (ENSELUG00000006370)	DDR1 (ENSELUG00000006327)	gnl1 (ENSELUG00000006281)	znf384b (ENSELUG00000006251)	dcaf13 (ENSELUG00000006191)	RIMS2 (ENSELUG00000006120)	DCSTAMP (ENSELUG00000005870)	dpys (ENSELUG00000005860)	zfpm2a (ENSELUG00000005828) ##22	ENSELUG00000005808	ENSELUG00000031148	ENSELUG00000033809	ENSELUG00000000157	oxr1b (ENSELUG00000005759)	sqlea (ENSELUG00000005641)	ENSELUG00000028300	rnf144b (ENSELUG00000005605)	ENSELUG00000005564	atp6v1c1a (ENSELUG00000005471)	azin1a (ENSELUG00000005433)	KLF10 (ENSELUG00000005378)	ubr5 (ENSELUG00000005362)	ENSELUG00000005324	ENSELUG00000005299
Salmoninae	ANCESTRAL SPECIES	209					ENSGT00940000163587.b.h	ENSGT00390000005284.b.d	ENSGT00940000161757.ab	ENSGT00560000077232.A.a.b	ENSGT00940000159733.g.b.b	ENSGT00940000158047.k	ENSGT00940000156904.a.b.d	ENSGT00390000005711.a.a.a	ENSGT00940000155236.r.a	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B.g	ENSGT00390000011759.d.b	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b.g.a.b	ENSGT00390000004263.a.d.a.n	ENSGT00950000182995.e.b.ab.b	ENSGT00940000159405.d.a	ENSGT00390000003058.b.a.a.a.b.g.b	ENSGT00990000204549.b	ENSGT00390000003058.b.a.a.a.b.g.a.a	ENSGT00390000004263.a.d.a.m	ENSGT00950000182995.e.b.ab.a	ENSGT00940000159405.d.b	ENSGT00940000156357
Salmoninae_a	ANCESTRAL SPECIES	43	ENSGT00390000005284.b.c	ENSGT00940000161757.`b	ENSGT00940000154370.d.b.d	ENSGT00560000077232.A.a.a	ENSGT00940000159733.g.a.b	ENSGT00940000158047.l	ENSGT00940000156904.a.b.c.a	ENSGT00390000005711.a.b	ENSGT00390000005711.a.a.b	ENSGT00940000155236.r.b	ENSGT00940000153269.b.b.m.a	ENSGT00390000005711.a.a.a	ENSGT00940000155236.r.a	ENSGT00940000153269.b.b.m.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B.g	ENSGT00390000011759.d.b	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b.g.a.b	ENSGT00390000004263.a.d.a.n	ENSGT00950000182995.e.b.ab.b	ENSGT00390000003058.b.a.a.a.b.g.b	ENSGT00990000204549.b	ENSGT00390000003058.b.a.a.a.b.g.a.a	ENSGT00390000004263.a.d.a.m	ENSGT00950000182995.e.b.ab.a	ENSGT00940000159405.d.b	ENSGT00940000156357.q	ENSGT00940000154181.b.a.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000157775.q.a	ENSGT00530000067342.f	ENSGT00390000011918	ENSGT00940000163587.b.h	ENSGT00390000005284.b.c	ENSGT00940000161757.`b	ENSGT00940000154370.d.b.d.d	ENSGT00560000077232.A.a.a	ENSGT00940000159733.g.a.b	ENSGT00940000158047.l	ENSGT00940000156904.a.b.c.a	ENSGT00390000005711.a.a.b	ENSGT00940000155236.r.b	ENSGT00940000153269.b.b.m.a	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a.g ##22	ENSGT01030000239273	ENSGT00390000008074.d	ENSGT00940000155187.B.h
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000068860	ENSSSAG00000068858	ENSSSAG00000082007	ENSSSAG00000084585	ENSSSAG00000068852	ENSSSAG00000097531	tubb5 (ENSSSAG00000110640)	ENSSSAG00000086685	flot1b (ENSSSAG00000068819)	ENSSSAG00000055704	ENSSSAG00000055732	SOF1 (ENSSSAG00000055771)	RIMS2 (ENSSSAG00000107423)	DCSTAMP (ENSSSAG00000068804)	dpys (ENSSSAG00000068769)	zfpm2a (ENSSSAG00000038395) ##22	ENSSSAG00000038653	oxr1 (ENSSSAG00000039262)	ENSSSAG00000094161	ENSSSAG00000043094	atp6v1c1a (ENSSSAG00000048063)	azin1 (ENSSSAG00000037254)	ENSSSAG00000099065	ubr5 (ENSSSAG00000043773)	ENSSSAG00000050721	ENSSSAG00000037281	rn146 (ENSSSAG00000050752)	rspo3 (ENSSSAG00000103363)	trmt11 (ENSSSAG00000050902)	ENSSSAG00000103054	hint3 (ENSSSAG00000051374)
River trout	MODERN SPECIES	30	abhd16a (ENSSTUG00000032516)	vars1 (ENSSTUG00000029873)	ENSSTUG00000029807	ENSSTUG00000029770	ENSSTUG00000029758	tubb5 (ENSSTUG00000029651)	flot1b (ENSSTUG00000029305)	ENSSTUG00000029014	gnl1 (ENSSTUG00000028943)	znf384b (ENSSTUG00000028925)	dcaf13 (ENSSTUG00000028802)	RIMS2 (ENSSTUG00000026524)	ENSSTUG00000026441	ENSSTUG00000026425	dpys (ENSSTUG00000026376)	zfpm2a (ENSSTUG00000026349) ##22	ENSSTUG00000026325	ENSSTUG00000026298	OXR1 (ENSSTUG00000025320)	sqlea (ENSSTUG00000024690)	rnf144b (ENSSTUG00000024677)	ENSSTUG00000024597	atp6v1c1a (ENSSTUG00000024370)	azin1a (ENSSTUG00000024344)	KLF10 (ENSSTUG00000024339)	ubr5 (ENSSTUG00000023606)	ENSSTUG00000023558	LAPTM4B (ENSSTUG00000023553)	MATN2 (ENSSTUG00000023535)	RNF146 (ENSSTUG00000023525)	rspo3 (ENSSTUG00000023517)
Salmo	ANCESTRAL SPECIES	66																ENSGT00530000063823.b.b.a.h ##22	ENSGT00390000008074.c	ENSGT00940000155187.B.g	ENSGT00390000011759.d.b	ENSGT00940000158819	ENSGT00390000003058.b.a.a.a.b.g.a.b	ENSGT00390000004263.a.d.a.n	ENSGT00950000182995.e.b.ab.b	ENSGT00940000159405.d.a	ENSGT00940000156357.r	ENSGT00940000154181.b.a.b	ENSGT00940000153446.a.a.w.a.f	ENSGT00940000158008.a	ENSGT00390000000358.y.d.a	ENSGT00940000157815.a.c.d	ENSGT00390000018131.c
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000015988	ENSSSAG00000113530	ino80e (ENSSSAG00000105425)	ENSSSAG00000091411	ENSSSAG00000016135	tubb5 (ENSSSAG00000016311)	flot1b (ENSSSAG00000016509)	ENSSSAG00000017278	ENSSSAG00000025885	znf384b (ENSSSAG00000026427)	dcaf13 (ENSSSAG00000026650)	ENSSSAG00000119397	ENSSSAG00000082340	ENSSSAG00000114774	DCSTAMP (ENSSSAG00000121452)	zfpm2a (ENSSSAG00000051902) ##22	ENSSSAG00000051860	ENSSSAG00000048531	sqlea (ENSSSAG00000106450)	rnf144b (ENSSSAG00000043038)	ENSSSAG00000096786	ENSSSAG00000043463	ENSSSAG00000038979	ENSSSAG00000048024	ENSSSAG00000050743	RNF146 (ENSSSAG00000101201)	rspo3 (ENSSSAG00000069316)	trmt11 (ENSSSAG00000069286)	ENSSSAG00000120109	hint3 (ENSSSAG00000069265)	ENSSSAG00000090192
River trout	MODERN SPECIES	22	ENSSTUG00000015440	ino80e (ENSSTUG00000015457)	ENSSTUG00000015466	ENSSTUG00000015486	mdc1 (ENSSTUG00000015500)	ENSSTUG00000015517	flot1b (ENSSTUG00000015542)	ENSSTUG00000015658	ENSSTUG00000016047	gnl1 (ENSSTUG00000016056)	znf384b (ENSSTUG00000016096)	dcaf13 (ENSSTUG00000016110)	RIMS2 (ENSSTUG00000016266)	DCSTAMP (ENSSTUG00000017896)	dpys (ENSSTUG00000017916)	zfpm2a (ENSSTUG00000017929) ##22	ENSSTUG00000017944	oxr1b (ENSSTUG00000018045)	sqlea (ENSSTUG00000019788)	rnf144b (ENSSTUG00000020790)	ENSSTUG00000020799	atp6v1c1a (ENSSTUG00000020832)	AZIN1 (ENSSTUG00000021040)	KLF10 (ENSSTUG00000021049)	ENSSTUG00000021056	ENSSTUG00000021059	ubr5 (ENSSTUG00000021122)	ENSSTUG00000023480	LAPTM4B (ENSSTUG00000023487)	ENSSTUG00000023500	RNF146 (ENSSTUG00000023569)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	61	ENSGT01030000234988.e	ENSGT00940000160908.i	ENSGT00940000157775.q.b	ENSGT00530000067342.e	ENSGT00940000163587.b.g	ENSGT00390000005284.b.c.a	ENSGT00940000161757.ab	ENSGT00560000077232.A.a.b	ENSGT00940000159733.g.a.a	ENSGT00940000158047.k	ENSGT00940000156904.a.b.c.b	ENSGT00390000005711.b	ENSGT00940000155236.r.a.a	ENSGT00940000153269.b.b.m.b	ENSGT01030000234527.A.a.a.a.n	ENSGT00530000063823.b.b.a.i ##22	ENSGT00390000008074.e	ENSGT00940000155187.B.h	ENSGT00390000011759.d.b.a	ENSGT00940000158819.f	ENSGT00390000003058.b.a.a.a.b.g.a.b	ENSGT00390000004263.a.d.a.m	ENSGT00950000182995.e.b.ab.a	ENSGT00940000159405.d.b	ENSGT00940000156357.q	ENSGT00940000154181.b.a.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008.b.b.a	ENSGT00390000000358.y.c.b	ENSGT00940000157815.a.c.b	ENSGT00390000018131.d
Oncorhynchus_a	ANCESTRAL SPECIES	68	ENSGT00940000157775.q.b	ENSGT00530000067342.e	ENSGT00940000163587.b.g	ENSGT00390000005284.b.c.a	ENSGT00390000005284.b.d	ENSGT00940000161757.ab	ENSGT00560000077232.A.a.b	ENSGT00940000159733.g.a.a	ENSGT00940000158047.k	ENSGT00940000156904.a.b.d	ENSGT00940000156904.a.b.c.b	ENSGT00390000005711.b	ENSGT00940000155236.r.a.a	ENSGT00940000153269.b.b.m.b	ENSGT01030000234527.A.a.a.a.n	ENSGT00530000063823.b.b.a.i ##22	ENSGT00390000008074.e	ENSGT00940000155187.B.h	ENSGT00390000011759.d.b.a	ENSGT00940000158819.f	ENSGT00390000003058.b.a.a.a.b.g.a.b	ENSGT00390000004263.a.d.a.m	ENSGT00950000182995.e.b.ab.a	ENSGT00940000159405.d.b	ENSGT00940000156357.q	ENSGT00940000154181.b.a.a	ENSGT00940000153446.a.a.w.a	ENSGT00940000158008.b.b.a	ENSGT00390000000358.y.c.b	ENSGT00940000157815.a.c.b	ENSGT00390000018131.d
Chinook salmon	MODERN SPECIES	22	fbl (ENSOTSG00005026801)	dyrk1b (ENSOTSG00005026803)	zp3d.1 (ENSOTSG00005026804)	ENSOTSG00005026805	ENSOTSG00005026817	ENSOTSG00005033550	fzd6 (ENSOTSG00005033562)	CTHRC1 (ENSOTSG00005033563)	slc25a32b (ENSOTSG00005033564)	ENSOTSG00005033566	ENSOTSG00005033567	popdc3 (ENSOTSG00005033569)	bves (ENSOTSG00005033573)	LIN28B (ENSOTSG00005033574)	HACE1 (ENSOTSG00005033587)	zfpm2a (ENSOTSG00005037092) ##22	ENSOTSG00005037093	OXR1 (ENSOTSG00005037098)	sqlea (ENSOTSG00005037242)	rnf144b (ENSOTSG00005037811)	ENSOTSG00005037812	ENSOTSG00005037815	atp6v1c1a (ENSOTSG00005037816)	AZIN1 (ENSOTSG00005037984)	KLF10 (ENSOTSG00005037987)	ubr5 (ENSOTSG00005038160)	ENSOTSG00005041521	LAPTM4B (ENSOTSG00005041527)	ENSOTSG00005041536	RNF146 (ENSOTSG00005041537)	rspo3 (ENSOTSG00005041538)
Coho salmon	MODERN SPECIES	11	abhd16a (ENSOKIG00005002152)	vars1 (ENSOKIG00005001693)	ENSOKIG00005001663	ENSOKIG00005001660	ENSOKIG00005001655	ENSOKIG00005001645	flot1b (ENSOKIG00005001576)	DDR1 (ENSOKIG00005001477)	GNL1 (ENSOKIG00005001432)	znf384b (ENSOKIG00005001416)	dcaf13 (ENSOKIG00005001391)	RIMS2 (ENSOKIG00005000862)	ENSOKIG00005000700	dpys (ENSOKIG00005000688)	ENSOKIG00005000686	zfpm2a (ENSOKIG00005000681) ##22	ENSOKIG00005000672	ENSOKIG00005000665	OXR1 (ENSOKIG00005000604)	sqlea (ENSOKIG00005000465)	rnf144b (ENSOKIG00005000417)	ENSOKIG00005000383	atp6v1c1a (ENSOKIG00005000351)	AZIN1 (ENSOKIG00005000336)	KLF10 (ENSOKIG00005000332)	ubr5 (ENSOKIG00005000203)	ENSOKIG00005004052	LAPTM4B (ENSOKIG00005004042)	ENSOKIG00005004012	RNF146 (ENSOKIG00005003999)	RSPO3 (ENSOKIG00005003997)
Rainbow trout	MODERN SPECIES	21	vars1 (ENSOMYG00000003069)	ENSOMYG00000002937	ino80e (ENSOMYG00000002923)	ENSOMYG00000002897	ENSOMYG00000002885	mdc1 (ENSOMYG00000074282)	ENSOMYG00000057054	flot1b (ENSOMYG00000002799)	ENSOMYG00000058988	ENSOMYG00000002617	znf384b (ENSOMYG00000002461)	dcaf13 (ENSOMYG00000002416)	ENSOMYG00000002261	ENSOMYG00000071728	dpys (ENSOMYG00000001957)	zfpm2a (ENSOMYG00000027635) ##22	ENSOMYG00000027649	ENSOMYG00000062409	ENSOMYG00000029578	ENSOMYG00000028043	sqlea (ENSOMYG00000029693)	rnf144b (ENSOMYG00000030062)	ENSOMYG00000050050	atp6v1c1a (ENSOMYG00000030145)	AZIN1 (ENSOMYG00000030200)	ENSOMYG00000030224	ubr5 (ENSOMYG00000031273)	ENSOMYG00000036910	ENSOMYG00000036924	RNF146 (ENSOMYG00000036998)	ENSOMYG00000067380
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000157775.q.a	ENSGT00530000067342.f	ENSGT00390000011918	ENSGT00940000163587.b.h	ENSGT00390000005284.b.c.b	ENSGT00940000161757.`b	ENSGT00940000154370.d.b.d	ENSGT00560000077232.A.a.a	ENSGT00940000159733.g.a.b	ENSGT00940000158047.l	ENSGT00940000156904.a.b.c.a	ENSGT00390000005711.a.b	ENSGT00940000155236.r.b	ENSGT00940000155236.r.a.b	ENSGT00940000153269.b.b.m.a	ENSGT00530000063823.b.b.a.j ##22	ENSGT00390000008074.f	ENSGT00940000155187.B.g	ENSGT00390000011759.d.b.b	ENSGT00940000158819.e	ENSGT00390000003058.b.a.a.a.b.g.a.a	ENSGT00390000004263.a.d.a.n	ENSGT00950000182995.e.b.ab.b	ENSGT00940000159405.d.a	ENSGT00940000156357.r	ENSGT00940000154181.b.a.b	ENSGT00940000153446.a.a.x	ENSGT00940000158008.a	ENSGT00390000000358.y.c.a	ENSGT00940000157815.a.c.a	ENSGT00390000018131.c.c
Oncorhynchus_a	ANCESTRAL SPECIES	26	ENSGT00940000160908.j	ENSGT00940000157775.q.a	ENSGT00530000067342.f	ENSGT00390000011918	ENSGT00940000163587.b.h	ENSGT00390000005284.b.c.b	ENSGT00940000161757.`b	ENSGT00940000154370.d.b.d	ENSGT00560000077232.A.a.a	ENSGT00940000159733.g.b.a.a.a	ENSGT00940000158047.l	ENSGT00940000156904.a.b.c.a	ENSGT00390000005711.a.b	ENSGT00940000155236.r.b	ENSGT00940000153269.b.b.m.a	ENSGT00530000063823.b.b.a.j ##22	ENSGT00390000008074.f	ENSGT00940000155187.B.g	ENSGT00390000011759.d.b.b	ENSGT00940000158819.e	ENSGT00390000003058.b.a.a.a.b.g.a.a	ENSGT00390000004263.a.d.a.n	ENSGT00950000182995.e.b.ab.b	ENSGT00940000159405.d.a	ENSGT00940000156357.r	ENSGT00940000154181.b.a.b	ENSGT00940000153446.a.a.x	ENSGT00940000158008.a	ENSGT00390000000358.y.c.a	ENSGT00940000157815.a.c.a	ENSGT00390000018131.c.c
Coho salmon	MODERN SPECIES	4	abhd16a (ENSOKIG00005031436)	vars1 (ENSOKIG00005031800)	ENSOKIG00005034368	ino80e (ENSOKIG00005034387)	ENSOKIG00005034394	ENSOKIG00005034409	ENSOKIG00005034451	ENSOKIG00005034464	flot1b (ENSOKIG00005034473)	DDR1 (ENSOKIG00005034530)	gnl1 (ENSOKIG00005034632)	znf384b (ENSOKIG00005034760)	dcaf13 (ENSOKIG00005034798)	RIMS2 (ENSOKIG00005035394)	DCSTAMP (ENSOKIG00005036230)	zfpm2a (ENSOKIG00005036258) ##22	ENSOKIG00005036273	OXR1 (ENSOKIG00005036453)	ENSOKIG00005037151	sqlea (ENSOKIG00005037174)	rnf144b (ENSOKIG00005037725)	ENSOKIG00005037765	atp6v1c1a (ENSOKIG00005037842)	azin1a (ENSOKIG00005003826)	KLF10 (ENSOKIG00005003836)	ubr5 (ENSOKIG00005004019)	ENSOKIG00005008345	LAPTM4B (ENSOKIG00005008380)	MATN2 (ENSOKIG00005008387)	RNF146 (ENSOKIG00005008404)	rspo3 (ENSOKIG00005008411)
Chinook salmon	MODERN SPECIES	15	entpd3 (ENSOTSG00005007003)	ddc (ENSOTSG00005006867)	GRB10 (ENSOTSG00005003945)	cobl (ENSOTSG00005003924)	ENSOTSG00005003920	ENSOTSG00005003917	CCR8 (ENSOTSG00005003915)	ENSOTSG00005003912	ENSOTSG00005003531	ENSOTSG00005003508	gnl1 (ENSOTSG00005003446)	znf384b (ENSOTSG00005003406)	dcaf13 (ENSOTSG00005003352)	RIMS2 (ENSOTSG00005003333)	DCSTAMP (ENSOTSG00005002570)	zfpm2a (ENSOTSG00005043486) ##22	ENSOTSG00005043485	oxr1b (ENSOTSG00005043371)	sqlea (ENSOTSG00005043326)	rnf144b (ENSOTSG00005043325)	ENSOTSG00005043323	atp6v1c1a (ENSOTSG00005042787)	azin1a (ENSOTSG00005042786)	KLF10 (ENSOTSG00005042785)	ubr5 (ENSOTSG00005036542)	ENSOTSG00005036508	LAPTM4B (ENSOTSG00005036442)	MATN2 (ENSOTSG00005036427)	RNF146 (ENSOTSG00005036424)	rspo3 (ENSOTSG00005036423)	GRIK2 (ENSOTSG00005036422)
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000053020	ENSOMYG00000064233	ENSOMYG00000069395	ENSOMYG00000010396	mdc1 (ENSOMYG00000010376)	tubb5 (ENSOMYG00000074503)	flot1b (ENSOMYG00000010310)	ENSOMYG00000010181	ENSOMYG00000010032	znf384b (ENSOMYG00000050608)	dcaf13 (ENSOMYG00000009841)	ENSOMYG00000063174	ENSOMYG00000007520	DCSTAMP (ENSOMYG00000005654)	ENSOMYG00000071457	zfpm2a (ENSOMYG00000005530) ##22	ENSOMYG00000005251	ENSOMYG00000005020	sqlea (ENSOMYG00000004701)	rnf144b (ENSOMYG00000053176)	ENSOMYG00000004445	atp6v1c1a (ENSOMYG00000004295)	AZIN1 (ENSOMYG00000004112)	ENSOMYG00000004061	ubr5 (ENSOMYG00000003664)	ENSOMYG00000003015	ENSOMYG00000002913	RNF146 (ENSOMYG00000002835)	RSPO3 (ENSOMYG00000002826)	TRMT11 (ENSOMYG00000002785)	ENSOMYG00000037546
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1456																zfpm2a (ENSHHUG00000043650) ##22	ENSHHUG00000043648	ENSHHUG00000043646	ENSHHUG00000043645	OXR1 (ENSHHUG00000043641)	sqlea (ENSHHUG00000043633)	rnf144b (ENSHHUG00000043632)	ENSHHUG00000043630	ENSHHUG00000043628
Huchen	MODERN SPECIES	1761																zfpm2a (ENSHHUG00000050018) ##22	ENSHHUG00000050014	ENSHHUG00000050010
Huchen	MODERN SPECIES	4621																ENSHHUG00000043174 ##22
Otomorpha	ANCESTRAL SPECIES	328												ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011435	ENSGT00940000160768	ENSGT00940000153859.b	ENSGT00530000063156.b	ENSGT00950000182893.a.a.a.b.c
Clupeiformes	ANCESTRAL SPECIES	50	ENSGT00950000182904.a.a.b	ENSGT01030000235814	ENSGT00390000003568	ENSGT00940000163304.j.a	ENSGT01090000260040.b.b.a.e	ENSGT00390000003465.b.b.b	ENSGT00950000182810.A.a.b	ENSGT00390000004915.a	ENSGT00940000157647.d	ENSGT00940000164859	ENSGT00390000011137	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014398	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011435	ENSGT00940000160768	ENSGT00940000153859.b	ENSGT00530000063156.b
Denticle herring	MODERN SPECIES	15	ENSDCDG00000017079	SMG9 (ENSDCDG00000017100)	ENSDCDG00000017108	ENSDCDG00000017110	ENSDCDG00000017111	ywhabl (ENSDCDG00000017112)	PRELID3A (ENSDCDG00000017114)	fbxo32 (ENSDCDG00000017116)	lratd2b (ENSDCDG00000017124)	nsmce2 (ENSDCDG00000017125)	washc5 (ENSDCDG00000017127)	dcaf13 (ENSDCDG00000017147)	RIMS2 (ENSDCDG00000017230)	DCSTAMP (ENSDCDG00000020860)	dpys (ENSDCDG00000020870)	zfpm2a (ENSDCDG00000020929) ##22	ENSDCDG00000020931	OXR1 (ENSDCDG00000020942)	sqlea (ENSDCDG00000021141)	rnf144b (ENSDCDG00000021203)	ENSDCDG00000021206	ccdc127a (ENSDCDG00000021211)	mrpl32 (ENSDCDG00000021212)	ENSDCDG00000021216	ENSDCDG00000021243	ZHX1 (ENSDCDG00000021857)	zgc:101716 (ENSDCDG00000021859)	FAM83A (ENSDCDG00000021862)	TBC1D31 (ENSDCDG00000021881)	derl1 (ENSDCDG00000021948)	zgc:110410 (ENSDCDG00000021955)
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000014857	ENSCHAG00000014824	ywhabl (ENSCHAG00000014810)	ENSCHAG00000014790	PRELID3A (ENSCHAG00000014787)	fbxo32 (ENSCHAG00000014680)	KLHL38 (ENSCHAG00000014674)	LRATD2 (ENSCHAG00000014642)	nsmce2 (ENSCHAG00000014630)	washc5 (ENSCHAG00000014583)	dcaf13 (ENSCHAG00000014543)	ENSCHAG00000014526	RIMS2 (ENSCHAG00000010811)	DCSTAMP (ENSCHAG00000010704)	dpys (ENSCHAG00000010552)	zfpm2a (ENSCHAG00000010539) ##22	ENSCHAG00000010453	OXR1 (ENSCHAG00000008138)	sqlea (ENSCHAG00000007170)	rnf144b (ENSCHAG00000007025)	ENSCHAG00000006998	ENSCHAG00000006983	zgc:110410 (ENSCHAG00000006969)	ENSCHAG00000006943	apoc2 (ENSCHAG00000006934)	apoa2 (ENSCHAG00000006918)	ENSCHAG00000006905	ENSCHAG00000006897	apoeb (ENSCHAG00000006893)	ENSCHAG00000006873	ENSCHAG00000006864
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000166537	ENSGT01010000222294.c.a	ENSGT00940000172064	ENSGT00950000183155.a.b.a.b	ENSGT00940000154641.A	ENSGT00940000164813	ENSGT00940000165396.A.a	ENSGT00940000160881	ENSGT00940000165579.a.a.b	ENSGT00940000160768	ENSGT00390000011435	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011137	ENSGT00400000022250	ENSGT00940000156889	ENSGT00530000063909.b	ENSGT00940000165993
Characiphysae	ANCESTRAL SPECIES	37	ENSGT00390000013276	ENSGT00940000166159	ENSGT00940000166537	ENSGT00950000183155.a.b.a.b	ENSGT00940000154641.A	ENSGT00940000164813	ENSGT00940000165396.A.a	ENSGT00940000160881	ENSGT00940000165579.a.a.b	ENSGT00940000160768	ENSGT00390000011435	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011137	ENSGT00940000156889	ENSGT00400000022250	ENSGT00530000063909.b	ENSGT00940000165993
Channel catfish	MODERN SPECIES	15	ENSIPUG00000022258	steap4 (ENSIPUG00000022261)	fam188a (ENSIPUG00000022290)	itga8 (ENSIPUG00000022320)	rbm42 (ENSIPUG00000022365)	ENSIPUG00000022374	ENSIPUG00000022395	ENSIPUG00000022409	UPK1A (ENSIPUG00000022413)	ENSIPUG00000022426	zgc:101716 (ENSIPUG00000022422)	dcaf13 (ENSIPUG00000022430)	RIMS2 (ENSIPUG00000022446)	dcstamp (ENSIPUG00000022472)	dpys (ENSIPUG00000022479)	zfpm2 (ENSIPUG00000022508) ##22	ENSIPUG00000022534	oxr1 (ENSIPUG00000022544)	sqle (ENSIPUG00000022573)	rnf144b (ENSIPUG00000022584)	ENSIPUG00000022590	ccdc127 (ENSIPUG00000022591)	mrpl32 (ENSIPUG00000022592)	ENSIPUG00000022608	atad2 (ENSIPUG00000022624)	ZHX1 (ENSIPUG00000022650)	washc5 (ENSIPUG00000022653)	adam22 (ENSIPUG00000022674)	cldn12 (ENSIPUG00000022731)	ENSIPUG00000022733	DBF4 (ENSIPUG00000022737)
Characiphysae_b	ANCESTRAL SPECIES	37	ENSGT00390000013276	ENSGT00940000166159	ENSGT00940000166537	ENSGT00950000183155.a.b.a.b	ENSGT00940000154641.A.e	ENSGT00940000164813	ENSGT00940000165396.A.a	ENSGT00940000160881	ENSGT00940000165579.a.a.b	ENSGT00940000160768	ENSGT00390000011435	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011137	ENSGT00940000156889	ENSGT00400000022250	ENSGT00530000063909.b	ENSGT00940000165993
Characoidei	ANCESTRAL SPECIES	34	ENSGT00390000013276	ENSGT00940000166159	ENSGT00940000166537	ENSGT00950000183155.a.b.a.b	ENSGT00940000154641.A.e	ENSGT00940000164813	ENSGT00940000165396.A.a	ENSGT00940000160881	ENSGT00940000165579.a.a.b	ENSGT00940000160768	ENSGT00390000011435	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011137	ENSGT00940000156889	ENSGT00400000022250	ENSGT00530000063909.b	ENSGT00940000165993
Red-bellied piranha	MODERN SPECIES	258					ENSPNAG00000009907	rbm42 (ENSPNAG00000009961)	ENSPNAG00000001358	upk1a (ENSPNAG00000009999)	ENSPNAG00000010014	FAM83A (ENSPNAG00000010032)	zgc:101716 (ENSPNAG00000010042)	dcaf13 (ENSPNAG00000010091)	RIMS2 (ENSPNAG00000010420)	DCSTAMP (ENSPNAG00000010507)	dpys (ENSPNAG00000001404)	zfpm2a (ENSPNAG00000010580) ##22	ENSPNAG00000010614	rpp38 (ENSPNAG00000010633)	nmt2 (ENSPNAG00000010672)	FAM171A1 (ENSPNAG00000010733)	ENSPNAG00000010762
Mexicana tetra	MODERN SPECIES	36	ENSAMXG00000035731	ENSAMXG00000039916	rbm42 (ENSAMXG00000016545)	ENSAMXG00000016540	upk1a (ENSAMXG00000040255)	ENSAMXG00000035193	FAM83A (ENSAMXG00000016523)	zgc:101716 (ENSAMXG00000029066)	ENSAMXG00000030440	dcaf13 (ENSAMXG00000037008)	RIMS2 (ENSAMXG00000016468)	ENSAMXG00000034458	ENSAMXG00000040963	DCSTAMP (ENSAMXG00000039442)	dpys (ENSAMXG00000016436)	zfpm2a (ENSAMXG00000032770) ##22	ENSAMXG00000016415	oxr1b (ENSAMXG00000016404)	sqlea (ENSAMXG00000016393)	rnf144b (ENSAMXG00000043876)	ENSAMXG00000041209	ENSAMXG00000031367	ENSAMXG00000033691	ENSAMXG00000016362	ccdc127a (ENSAMXG00000032846)	ENSAMXG00000034118	abcb4 (ENSAMXG00000016165)	crot (ENSAMXG00000016134)	acbd7 (ENSAMXG00000016122)	rpp38 (ENSAMXG00000025023)	nmt2 (ENSAMXG00000016117)
Electric eel	MODERN SPECIES	136	ENSEEEG00000004402	arv1 (ENSEEEG00000004401)	ttc13 (ENSEEEG00000004395)	ENSEEEG00000004393	si:ch73-111k22.2 (ENSEEEG00000004392)	rps6kc1 (ENSEEEG00000004391)	ENSEEEG00000004390	upk1a (ENSEEEG00000004388)	ENSEEEG00000004387	zgc:101716 (ENSEEEG00000004386)	dcaf13 (ENSEEEG00000004383)	ENSEEEG00000004382	ENSEEEG00000004381	ENSEEEG00000004380	dpys (ENSEEEG00000004379)	zfpm2a (ENSEEEG00000004378) ##22	ENSEEEG00000004377	oxr1b (ENSEEEG00000004237)	sqlea (ENSEEEG00000004226)	rnf144b (ENSEEEG00000004221)	ENSEEEG00000004219	ccdc127a (ENSEEEG00000004217)	mrpl32 (ENSEEEG00000004216)	psma2a (ENSEEEG00000004213)	ATAD2 (ENSEEEG00000004199)	ZHX1 (ENSEEEG00000004187)	washc5 (ENSEEEG00000004162)	cldn12 (ENSEEEG00000004154)	ADAM22 (ENSEEEG00000004148)	dbf4 (ENSEEEG00000004145)	slc25a40 (ENSEEEG00000004143)
Cyprinoidei	ANCESTRAL SPECIES	25	ENSGT00940000166537	ENSGT01010000222294.c.a	ENSGT00940000157687.a	ENSGT00940000158130.i	ENSGT01030000234856	ENSGT00940000164813	ENSGT00940000165396.A.a	ENSGT00940000160881	ENSGT00940000165579.a.a.b	ENSGT00940000160768	ENSGT00390000011435	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759.e	ENSGT00940000158819	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870.u.a.a	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011137	ENSGT00400000022250	ENSGT00940000156889	ENSGT00530000063909.b	ENSGT00940000165993
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	83	ENSGT00940000164813.e.a	ENSGT00940000165396.A.a.e.a	ENSGT00940000160881.d	ENSGT00940000165579.a.a.b	ENSGT00940000160768.g	ENSGT00390000011435.n	ENSGT00390000005711.c	ENSGT00940000155236.j.a.a	ENSGT00940000153269.b.b.d	ENSGT00530000063823.b.b.a.n ##22	ENSGT00390000008074.a	ENSGT00940000155187.B.o.a	ENSGT00390000011759.e.a	ENSGT00940000158819.i	ENSGT00390000012014.A.f	ENSGT00530000063823.b.b.a.m ##22	ENSGT00390000008074.b	ENSGT00940000155187.B.o.b	ENSGT00390000011759.e.b	ENSGT00940000158819.j	ENSGT00390000012014.A.e	ENSGT00390000008818.r	ENSGT00390000014996.g	ENSGT00550000074870.u.a.a	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b.b	ENSGT00390000014996.h	ENSGT00550000074870.v	ENSGT00940000165417	ENSGT00950000182893.a.a.a.a.b.a	ENSGT00390000011137
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	643														ENSCARG00000069539	dpys (ENSCARG00000069546)	ENSCARG00000069552 ##22
Goldfish	MODERN SPECIES	7	zfpm2a (ENSCARG00000004501) ##22	ENSCARG00000004491	ENSCARG00000004478	cd22 (ENSCARG00000004451)	rbm42 (ENSCARG00000004435)	ENSCARG00000004369	ENSCARG00000004347	upk1a (ENSCARG00000004329)	ENSCARG00000004322	FAM83A (ENSCARG00000004312)	ENSCARG00000004291	RIMS2 (ENSCARG00000003057)	DCSTAMP (ENSCARG00000002928)	ENSCARG00000002922	ENSCARG00000002915	ENSCARG00000002911 ##22	osr2 (ENSCARG00000002909)	ENSCARG00000002878	fbxo43 (ENSCARG00000002861)	khdc4 (ENSCARG00000002856)	zbtb7b (ENSCARG00000002850)	ENSCARG00000002835	pklr (ENSCARG00000002571)	ENSCARG00000002517	clk2b (ENSCARG00000002335)	ENSCARG00000002258	ENSCARG00000002245	DENND4B (ENSCARG00000002069)	ENSCARG00000002012	ENSCARG00000001990	ENSCARG00000001982
Goldfish	MODERN SPECIES	35	eif3ea (ENSCARG00000033600)	emc2 (ENSCARG00000033776)	TMEM74 (ENSCARG00000033857)	TRHR (ENSCARG00000033866) ##23	eny2 (ENSCARG00000033876)	gdf6a (ENSCARG00000033885)	ENSCARG00000033893	sybu (ENSCARG00000033927)	ebag9 (ENSCARG00000033992)	zdhhc3a (ENSCARG00000034006)	tmem42a (ENSCARG00000034026)	gpd1l (ENSCARG00000034032)	rbms3 (ENSCARG00000034067)	TGFBR2 (ENSCARG00000034100)	stt3b (ENSCARG00000037266)	zfpm2a (ENSCARG00000037303) ##22	ENSCARG00000037408	OXR1 (ENSCARG00000037993)	sqlea (ENSCARG00000045267)	rnf144b (ENSCARG00000046171)	ENSCARG00000046202	ccdc127a (ENSCARG00000046253)	dpys (ENSCARG00000046273)	RIMS2 (ENSCARG00000046521)	dcaf13 (ENSCARG00000048213)	zgc:101716 (ENSCARG00000048353)	FAM83A (ENSCARG00000048417)	ENSCARG00000048430	upk1a (ENSCARG00000048441)	ENSCARG00000048463	rbm42 (ENSCARG00000048498)
Cyprininae_a	ANCESTRAL SPECIES	78	ENSGT01100000263583.d	ENSGT00940000160272.c	ENSGT00390000013276.d	ENSGT00940000166159.x	ENSGT00940000166537.b	ENSGT01010000222294.c.a.ib.a.b	ENSGT00940000164813.f	ENSGT00940000165396.A.a.f	ENSGT00940000160881.c	ENSGT00940000160768.h	ENSGT00390000011435.m	ENSGT00390000005711.d	ENSGT00940000155236.j.a.b	ENSGT00940000153269.b.b.c	ENSGT01030000234527.A.a.a.a.c	ENSGT00530000063823.b.b.a.m ##22	ENSGT00390000008074.b	ENSGT00940000155187.B.o.b	ENSGT00390000011759.e.b	ENSGT00940000158819.j	ENSGT00390000012014.A.e	ENSGT00390000008818.r.a
Common carp reference	MODERN SPECIES	2	fxyd3 (ENSCCRG00000064664)	ENSCCRG00000077158	gapdhs (ENSCCRG00000062099)	tmem147 (ENSCCRG00000057551)	sult2st3 (ENSCCRG00000055389)	ENSCCRG00000081638	cd22 (ENSCCRG00000041821)	ENSCCRG00000076960	upk1a (ENSCCRG00000033842)	ENSCCRG00000066302	zgc:101716 (ENSCCRG00000046608)	dcaf13 (ENSCCRG00000046600)	ENSCCRG00000033866	DCSTAMP (ENSCCRG00000033882)	dpys (ENSCCRG00000054661)	zfpm2a (ENSCCRG00000032136) ##22	ENSCCRG00000060104	ENSCCRG00000064321	sqlea (ENSCCRG00000080028)	rnf144b (ENSCCRG00000067640)	ENSCCRG00000056854	ccdc127a (ENSCCRG00000036189)	mrpl32 (ENSCCRG00000072577)	ENSCCRG00000062999	ENSCCRG00000079518	washc5 (ENSCCRG00000032857)	ADAM22 (ENSCCRG00000032895)	cldn12 (ENSCCRG00000078404)	dbf4 (ENSCCRG00000032869)	slc25a40 (ENSCCRG00000032868)	rundc3b (ENSCCRG00000032866)
Golden-line barbel	MODERN SPECIES	584			gapdhs (ENSSGRG00000052627)	tmem147 (ENSSGRG00000052584)	sult2st3 (ENSSGRG00000052583)	ENSSGRG00000052582	rbm42 (ENSSGRG00000052581)	ENSSGRG00000052580	upk1a (ENSSGRG00000052578)	ENSSGRG00000052577	zgc:101716 (ENSSGRG00000052576)	dcaf13 (ENSSGRG00000052574)	RIMS2 (ENSSGRG00000052572)	DCSTAMP (ENSSGRG00000052570)	dpys (ENSSGRG00000052569)	zfpm2a (ENSSGRG00000052568) ##22	ENSSGRG00000052567	OXR1 (ENSSGRG00000052566)	sqlea (ENSSGRG00000052538)	rnf144b (ENSSGRG00000052534)	ENSSGRG00000052533	ccdc127a (ENSSGRG00000052532)	mrpl32 (ENSSGRG00000052531)	ENSSGRG00000052486	ENSSGRG00000052460	ZHX1 (ENSSGRG00000052458)	washc5 (ENSSGRG00000052398)	cldn12 (ENSSGRG00000052395)	ADAM22 (ENSSGRG00000052370)
Cyprininae	ANCESTRAL SPECIES	83	ENSGT00940000167370.c	ENSGT00940000160272.d	ENSGT00390000013276.c	ENSGT00940000166159.w	ENSGT00940000166537.a	ENSGT01010000222294.c.a.ib.a.a	ENSGT00940000164813.e.a	ENSGT00940000165396.A.a.e.a	ENSGT00940000160881.d	ENSGT00940000165579.a.a.b	ENSGT00940000160768.g	ENSGT00390000011435.n	ENSGT00390000005711.c	ENSGT00940000155236.j.a.a	ENSGT00940000153269.b.b.d	ENSGT00530000063823.b.b.a.n ##22	ENSGT00390000008074.a	ENSGT00940000155187.B.o.a	ENSGT00390000011759.e.a	ENSGT00940000158819.i	ENSGT00390000012014.A.f	ENSGT00530000063823.b.b.a.m ##22	ENSGT00390000008074.b	ENSGT00940000155187.B.o.b	ENSGT00390000011759.e.b	ENSGT00940000158819.j	ENSGT00390000012014.A.e	ENSGT00390000008818.r	ENSGT00390000014996.g	ENSGT00550000074870.u.a.a	ENSGT00550000074694.a.k
Goldfish	MODERN SPECIES	7	ENSCARG00000002911 ##22	ENSCARG00000002915	ENSCARG00000002922	DCSTAMP (ENSCARG00000002928)	RIMS2 (ENSCARG00000003057)	ENSCARG00000004291	FAM83A (ENSCARG00000004312)	ENSCARG00000004322	upk1a (ENSCARG00000004329)	ENSCARG00000004347	ENSCARG00000004369	rbm42 (ENSCARG00000004435)	cd22 (ENSCARG00000004451)	ENSCARG00000004478	ENSCARG00000004491	zfpm2a (ENSCARG00000004501) ##22	ENSCARG00000004513	OXR1 (ENSCARG00000004681)	mrpl32 (ENSCARG00000006662)	sqlea (ENSCARG00000006683)	rnf144b (ENSCARG00000006756)	ENSCARG00000006770	psma2a (ENSCARG00000006777)	ENSCARG00000006904	ZHX1 (ENSCARG00000007968)	ADAM22 (ENSCARG00000008093)	cldn12 (ENSCARG00000010666)	dbf4 (ENSCARG00000010674)	slc25a40 (ENSCARG00000010705)	rundc3b (ENSCARG00000010741)	ENSCARG00000010797
Cyprininae_a	ANCESTRAL SPECIES	117	ENSGT00940000160272.d	ENSGT00390000013276.c	ENSGT00940000166159.w	ENSGT00940000166537.a	ENSGT01010000222294.c.a.ib.a.a	ENSGT00940000164813.e.a	ENSGT00940000165396.A.b.a	ENSGT00940000160881.d	ENSGT00940000165579.a.a.b	ENSGT00940000160768.g	ENSGT00390000011435.n	ENSGT00390000005711.c	ENSGT00940000155236.j.a.a	ENSGT00940000153269.b.b.d	ENSGT01030000234527.A.a.a.a.d	ENSGT00530000063823.b.b.a.n ##22	ENSGT00390000008074.a	ENSGT00940000155187.B.o.a	ENSGT00390000011759.e.a	ENSGT00940000158819.i	ENSGT00390000012014.A.f	ENSGT00390000008818.r.b	ENSGT00390000014996.g	ENSGT00550000074870.u.a.a	ENSGT00550000074694.a.k	ENSGT00950000182893.a.a.a.a.b.b	ENSGT00390000014996.h	ENSGT00550000074870.v	ENSGT00940000165417	ENSGT00950000182893.a.a.a.a.b.a	ENSGT00390000011137
Common carp reference	MODERN SPECIES	47	ENSCCRG00000033828	cd22 (ENSCCRG00000005294)	rbm42 (ENSCCRG00000066030)	ENSCCRG00000041824	ENSCCRG00000070495	ENSCCRG00000036360	upk1a (ENSCCRG00000005472)	ENSCCRG00000075730	ENSCCRG00000061220	zgc:101716 (ENSCCRG00000063497)	dcaf13 (ENSCCRG00000059622)	ENSCCRG00000066150	DCSTAMP (ENSCCRG00000033874)	dpys (ENSCCRG00000033877)	ENSCCRG00000033883	zfpm2a (ENSCCRG00000046960) ##22	ENSCCRG00000033417	ENSCCRG00000049443	sqlea (ENSCCRG00000049145)	rnf144b (ENSCCRG00000049137)	ENSCCRG00000036191	mrpl32 (ENSCCRG00000081122)	ccdc127a (ENSCCRG00000053513)	ENSCCRG00000071529	ENSCCRG00000064235	ADAM22 (ENSCCRG00000037787)	cldn12 (ENSCCRG00000021987)	dbf4 (ENSCCRG00000021975)	slc25a40 (ENSCCRG00000021970)	rundc3b (ENSCCRG00000051706)	ENSCCRG00000032861
Golden-line barbel	MODERN SPECIES	152	ENSSGRG00000048097	ENSSGRG00000048092	sult2st3 (ENSSGRG00000048087)	ENSSGRG00000048085	cd22 (ENSSGRG00000048084)	ENSSGRG00000048082	ENSSGRG00000048080	upk1a (ENSSGRG00000048079)	ENSSGRG00000048078	ENSSGRG00000048076	dcaf13 (ENSSGRG00000048075)	dcaf13 (ENSSGRG00000048044)	RIMS2 (ENSSGRG00000048041)	DCSTAMP (ENSSGRG00000048040)	dpys (ENSSGRG00000048039)	zfpm2a (ENSSGRG00000048034) ##22	ENSSGRG00000048031	OXR1 (ENSSGRG00000047984)	sqlea (ENSSGRG00000047969)	rnf144b (ENSSGRG00000047968)	ccdc127a (ENSSGRG00000047966)	ENSSGRG00000047965	mrpl32 (ENSSGRG00000047964)	psma2a (ENSSGRG00000047862)	ATAD2 (ENSSGRG00000047748)	ZHX1 (ENSSGRG00000047739)	washc5 (ENSSGRG00000047221)	cldn12 (ENSSGRG00000047203)	ADAM22 (ENSSGRG00000047197)	dbf4 (ENSSGRG00000047196)	slc25a40 (ENSSGRG00000047139)
Zebrafish	MODERN SPECIES	7	gapdhs (ENSDARG00000039914)	tmem147 (ENSDARG00000039913)	sult2st3 (ENSDARG00000028367)	ENSDARG00000089586	cd22 (ENSDARG00000053005)	rbm42 (ENSDARG00000039910)	ENSDARG00000011333	upk1a (ENSDARG00000021866)	ENSDARG00000089112	ENSDARG00000097563	zgc:101716 (ENSDARG00000010738)	dcaf13 (ENSDARG00000002267)	RIMS2 (ENSDARG00000113702)	ENSDARG00000101606	dpys (ENSDARG00000079543)	zfpm2a (ENSDARG00000040123) ##22	ENSDARG00000095821	ENSDARG00000100474	sqlea (ENSDARG00000079946)	rnf144b (ENSDARG00000024940)	ENSDARG00000113257	ccdc127a (ENSDARG00000104344)	mrpl32 (ENSDARG00000060489)	psma2a (ENSDARG00000040121)	ATAD2 (ENSDARG00000076590)	washc5 (ENSDARG00000101543)	cldn12 (ENSDARG00000003927)	ADAM22 (ENSDARG00000060532)	dbf4 (ENSDARG00000074796)	slc25a40 (ENSDARG00000015856)	rundc3b (ENSDARG00000009961)
Osteoglossiformes	ANCESTRAL SPECIES	20	ENSGT00390000000781	ENSGT00940000154686.b	ENSGT00940000153393.A.o	ENSGT00510000048187	ENSGT00390000000724.c.b.c	ENSGT00940000156554.a	ENSGT01030000234510.a.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00530000063823.b.b.a ##22	ENSGT00390000008074	ENSGT00940000155187.B	ENSGT00390000011759	ENSGT00940000158819.a	ENSGT00390000012014.A	ENSGT00390000008818	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a	ENSGT00950000182893.a.a.a.a.b	ENSGT00390000011435	ENSGT00940000160768	ENSGT00940000153859.b	ENSGT00390000010337.B.a.b	ENSGT00950000182863.A.b
Asian bonytongue	MODERN SPECIES	9	cep76 (ENSSFOG00015006465)	ENSSFOG00015029655	ptpn2a (ENSSFOG00015006429)	SEH1L (ENSSFOG00015025567)	ldlrad4b (ENSSFOG00015027111)	fam210ab (ENSSFOG00015026874)	mc5ra (ENSSFOG00015006317)	mc2r (ENSSFOG00015006283)	fzd6 (ENSSFOG00015006237)	cthrc1a (ENSSFOG00015006217)	slc25a32a (ENSSFOG00015006183)	dcaf13 (ENSSFOG00015006138)	RIMS2 (ENSSFOG00015006053)	DCSTAMP (ENSSFOG00015006032)	dpys (ENSSFOG00015006007)	zfpm2a (ENSSFOG00015005974) ##22	ENSSFOG00015025352	oxr1b (ENSSFOG00015005807)	sqlea (ENSSFOG00015005755)	rnf144b (ENSSFOG00015005734)	ENSSFOG00015026959	ccdc127a (ENSSFOG00015005719)	mrpl32 (ENSSFOG00015005707)	PSMA2 (ENSSFOG00015005685)	ATAD2 (ENSSFOG00015005584)	ZHX1 (ENSSFOG00015005559)	zgc:101716 (ENSSFOG00015024822)	FAM83A (ENSSFOG00015031348)	TBC1D31 (ENSSFOG00015005517)	ENSSFOG00015005317	has2 (ENSSFOG00015005287)
P. kingsleyae	MODERN SPECIES	1	ID4 (ENSPKIG00000017036)	cep76 (ENSPKIG00000017067)	ptpn2a (ENSPKIG00000017135)	ENSPKIG00000017245	ldlrad4b (ENSPKIG00000017292)	fam210ab (ENSPKIG00000017355)	mc5ra (ENSPKIG00000017392)	mc2r (ENSPKIG00000017402)	fzd6 (ENSPKIG00000017413)	cthrc1a (ENSPKIG00000017436)	slc25a32a (ENSPKIG00000017451)	dcaf13 (ENSPKIG00000017471)	RIMS2 (ENSPKIG00000017648)	DCSTAMP (ENSPKIG00000017966)	dpys (ENSPKIG00000018031)	zfpm2a (ENSPKIG00000018109) ##22	ENSPKIG00000018144	OXR1 (ENSPKIG00000018182)	sqlea (ENSPKIG00000018220)	rnf144b (ENSPKIG00000018279)	ENSPKIG00000018337	ccdc127a (ENSPKIG00000018361)	ENSPKIG00000018381	mrpl32 (ENSPKIG00000018407)	PSMA2 (ENSPKIG00000018431)	ENSPKIG00000018447	CCR8 (ENSPKIG00000018468)	ENSPKIG00000018483	ENSPKIG00000018507	ZHX1 (ENSPKIG00000018530)	zgc:101716 (ENSPKIG00000018559)
Osteoglossocephalai	ANCESTRAL SPECIES	61	ENSGT00390000009631	ENSGT00390000004263.a.d.b	ENSGT00950000182995.e.b.`b	ENSGT00940000156357	ENSGT00390000013305.a.b	ENSGT00940000153446.a.a.w.b	ENSGT00390000003465.a	ENSGT00940000155788.l	ENSGT00940000163010	ENSGT00390000018415	ENSGT00940000154686.a	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00390000014398
Osteoglossiformes	ANCESTRAL SPECIES	125	ENSGT00940000153773.b	ENSGT00940000160311.a.b	ENSGT01090000260040.b.b.a.a.a	ENSGT00940000155788.l	ENSGT00940000158862.f	ENSGT00940000162435.b	ENSGT00940000162435.a.a	ENSGT00390000018415	ENSGT00940000154686.a	ENSGT00940000153393.A.n	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT01030000234510.a.a.a.a.a.a.b	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22
P. kingsleyae	MODERN SPECIES	104			ENSPKIG00000000239	ENSPKIG00000000237	ENSPKIG00000000223	ENSPKIG00000000212	psmg2 (ENSPKIG00000000197)	ptpn2b (ENSPKIG00000000169)	seh1l (ENSPKIG00000000143)	LDLRAD4 (ENSPKIG00000000125)	fam210aa (ENSPKIG00000000112)	rnmt (ENSPKIG00000000087)	mc5ra (ENSPKIG00000000075)	ENSPKIG00000000007	lrp12 (ENSPKIG00000025594)	ZFPM2 (ENSPKIG00000025607) ##22	oxr1b (ENSPKIG00000025595)	ENSPKIG00000025596	rnf144b (ENSPKIG00000025604)	sdha (ENSPKIG00000024753)	psma2b (ENSPKIG00000024738)	wdyhv1 (ENSPKIG00000024731)	ZHX1 (ENSPKIG00000024726)	derl1 (ENSPKIG00000024714)	ZHX2 (ENSPKIG00000024705)	COL14A1 (ENSPKIG00000024680)	deptor (ENSPKIG00000024652)	ENPP2 (ENSPKIG00000024612)	ENSPKIG00000024511	ENSPKIG00000024462	ENSPKIG00000024447
Asian bonytongue	MODERN SPECIES	15	ENSSFOG00015019904	dync1li1 (ENSSFOG00015023670)	ENSSFOG00015027431	CMTM7 (ENSSFOG00015032282)	ctnnb1 (ENSSFOG00015019803)	ENSSFOG00015019711	ccka (ENSSFOG00015019680)	ENSSFOG00015019668	fam210aa (ENSSFOG00015019627)	rnmt (ENSSFOG00015019605)	mc5ra (ENSSFOG00015019578)	ENSSFOG00015019567	ENSSFOG00015030595	ENSSFOG00015019519	lrp12 (ENSSFOG00015019508)	ZFPM2 (ENSSFOG00015019499) ##22	ENSSFOG00015031998	ENSSFOG00015024228	marcksl1b (ENSSFOG00015019452)	olig4 (ENSSFOG00015007729)	fndc5b (ENSSFOG00015032028)	maco1a (ENSSFOG00015007806)	dnajc8 (ENSSFOG00015028549)	ENSSFOG00015032344	ENSSFOG00015030229	ADGRB1 (ENSSFOG00015007943)	dctn3 (ENSSFOG00015008028)	HERPUD2 (ENSSFOG00015008068)	SLC4A7 (ENSSFOG00015008141)	eomesa (ENSSFOG00015008302)	CMC1 (ENSSFOG00015008534)
Clupeocephala	ANCESTRAL SPECIES	64	ENSGT00940000154697.a.a.a.a	ENSGT00940000158703	ENSGT00940000160311.a.a	ENSGT00940000160311.a.b	ENSGT01090000260040.b.b.a	ENSGT00390000003465.b.b.a	ENSGT00940000155788.l	ENSGT00940000163010	ENSGT00390000018415	ENSGT00940000154686.a	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT00940000167426	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00390000014398
Otomorpha	ANCESTRAL SPECIES	340	ENSGT00940000160311.a.a	ENSGT00940000160311.a.b	ENSGT01090000260040.b.b.a.f	ENSGT00390000003465.b.b.a	ENSGT00940000155788.l	ENSGT00940000163010.v	ENSGT00390000018415	ENSGT00940000154686.a	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT00390000018094.k	ENSGT00920000149145	ENSGT00940000167426	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00550000074694.a.l
Clupeiformes	ANCESTRAL SPECIES	326		ENSGT00940000155788.k	ENSGT00940000158862	ENSGT00940000162435	ENSGT00390000000781	ENSGT00940000170761	ENSGT00940000154686.b	ENSGT00940000153393.A	ENSGT00510000048187	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT01030000234510.a.a.a.a.a.a	ENSGT00390000018094.k	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00550000074694.a.l
Atlantic herring	MODERN SPECIES	10	ENSCHAG00000019105	ENSCHAG00000019077	TRAPPC9 (ENSCHAG00000018969)	btg4 (ENSCHAG00000018954)	ENSCHAG00000018934	seh1l (ENSCHAG00000018866)	LDLRAD4 (ENSCHAG00000018847)	fam210aa (ENSCHAG00000018827)	rnmt (ENSCHAG00000018809)	mc5ra (ENSCHAG00000018780)	cthrc1a (ENSCHAG00000018745)	slc25a32a (ENSCHAG00000018728)	ENSCHAG00000017572	DCSTAMP (ENSCHAG00000017523)	lrp12 (ENSCHAG00000017476)	zfpm2b (ENSCHAG00000017466) ##22	ENSCHAG00000016811	si:ch211-81a5.8 (ENSCHAG00000016779)	clk2a (ENSCHAG00000014565)	setdb1a (ENSCHAG00000014402)	ENSCHAG00000014351	ENSCHAG00000014142	ENSCHAG00000014118	ENSCHAG00000014102	ENSCHAG00000014096	slc52a2 (ENSCHAG00000014082)	ENSCHAG00000013905	nfatc1 (ENSCHAG00000013880)	atp9b (ENSCHAG00000008142)	sall3b (ENSCHAG00000007900)	LIX1L (ENSCHAG00000007816)
Denticle herring	MODERN SPECIES	12	anp32e (ENSDCDG00000025863)	plekho1a (ENSDCDG00000025866)	vps45 (ENSDCDG00000025870)	ENSDCDG00000025897	seh1l (ENSDCDG00000025900)	LDLRAD4 (ENSDCDG00000025901)	fam210aa (ENSDCDG00000025902)	rnmt (ENSDCDG00000025904)	mc5ra (ENSDCDG00000026025)	cthrc1a (ENSDCDG00000026026)	slc25a32a (ENSDCDG00000026027)	ENSDCDG00000026042	ENSDCDG00000026878	lrp12 (ENSDCDG00000026885)	NEK10 (ENSDCDG00000026895)	zfpm2b (ENSDCDG00000026903) ##22	smap2 (ENSDCDG00000027127)	rims3 (ENSDCDG00000027128)	gstr (ENSDCDG00000027129)	ENSDCDG00000027139	slc6a19a.1 (ENSDCDG00000027158)	ENSDCDG00000027204	slc6a18 (ENSDCDG00000027241)	tert (ENSDCDG00000027427)	nup42 (ENSDCDG00000027453)	klhl7 (ENSDCDG00000027457)	RAPGEF5 (ENSDCDG00000027461)	TOMM7 (ENSDCDG00000027466)	hycc1 (ENSDCDG00000027472)	CDCA7L (ENSDCDG00000027486)	sp4 (ENSDCDG00000027489)
Otophysi	ANCESTRAL SPECIES	234	ENSGT00940000160311.a.b	ENSGT01090000260040.b.b.a.f	ENSGT00390000003465.b.b.a	ENSGT00940000155788.l	ENSGT00940000163010.v	ENSGT00390000018415	ENSGT00940000154686.a	ENSGT00940000153393.A	ENSGT00510000048187	ENSGT00980000199189	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT00940000167426	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00550000074694.a.l
Characiphysae	ANCESTRAL SPECIES	296															ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00550000074694.a.l
Characiphysae_b	ANCESTRAL SPECIES	330															ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00550000074694.a.l
Characoidei	ANCESTRAL SPECIES	79																ENSGT00530000063823.b.b.b ##22	ENSGT00550000074694.a.l	ENSGT00940000159283.c.a	ENSGT00950000182919.B.a.h	ENSGT00940000158522.m	ENSGT00990000204388	ENSGT00400000025005.a	ENSGT00940000154870.A.b	ENSGT00990000205603.d	ENSGT00940000161854.b	ENSGT00530000063725.o	ENSGT00730000111394	ENSGT00940000156361.A.a	ENSGT00940000164158.A.b	ENSGT00390000014273.b	ENSGT00940000160132
Red-bellied piranha	MODERN SPECIES	715																zfpm2b (ENSPNAG00000029318) ##22	ENSPNAG00000029266	thbs3b (ENSPNAG00000029230)	mtx1b (ENSPNAG00000029165)	txnipa (ENSPNAG00000029127)
Mexicana tetra	MODERN SPECIES	15	ENSAMXG00000031810	spag1a (ENSAMXG00000008577)	rnf19a (ENSAMXG00000008586)	pabpc1b (ENSAMXG00000008599)	ywhaz (ENSAMXG00000035237)	ENSAMXG00000033825	znf706 (ENSAMXG00000029061)	grhl2b (ENSAMXG00000040889)	NCALD (ENSAMXG00000016729)	psmg2 (ENSAMXG00000030096)	ptpn2b (ENSAMXG00000016775)	seh1l (ENSAMXG00000016797)	LDLRAD4 (ENSAMXG00000016814)	fam210aa (ENSAMXG00000016849)	rnmt (ENSAMXG00000040785)	zfpm2b (ENSAMXG00000017011) ##22	thbs3b (ENSAMXG00000017055)	mtx1b (ENSAMXG00000040596)	txnipa (ENSAMXG00000036748)	polr3gla (ENSAMXG00000031351)	ENSAMXG00000017151	ENSAMXG00000017158	ENSAMXG00000027378	s100v2 (ENSAMXG00000039311)	ENSAMXG00000033263	ENSAMXG00000017166	ENSAMXG00000029326	ENSAMXG00000032226	ENSAMXG00000029209	ENSAMXG00000032685	ENSAMXG00000017176
Electric eel	MODERN SPECIES	1208															lrp12 (ENSEEEG00000018247)	zfpm2b (ENSEEEG00000018227) ##22
Channel catfish	MODERN SPECIES	3	rit1 (ENSIPUG00000018562)	pex11b (ENSIPUG00000018587)	zgc:64022 (ENSIPUG00000018600)	ENSIPUG00000018612	thap7 (ENSIPUG00000018630)	S100A14 (ENSIPUG00000018638)	ENSIPUG00000018648	ENSIPUG00000018663	si:dkey-81h8.1 (ENSIPUG00000018685)	polr3gla (ENSIPUG00000018691)	txnipa (ENSIPUG00000018698)	MTX1 (ENSIPUG00000018707)	thbs3b (ENSIPUG00000018726)	gh1 (ENSIPUG00000018822)	lrp12 (ENSIPUG00000018857)	zfpm2b (ENSIPUG00000018876) ##22	ENSIPUG00000018887	ENSIPUG00000018903	myl4 (ENSIPUG00000018964)	ENSIPUG00000018995	ENSIPUG00000019100	cdc27 (ENSIPUG00000019156)	ENSIPUG00000019294	ENSIPUG00000019303	ENSIPUG00000019315	ENSIPUG00000019322	ENSIPUG00000019328	ENSIPUG00000019380	ENSIPUG00000019412	ENSIPUG00000019439	ENSIPUG00000019494
Cyprinoidei	ANCESTRAL SPECIES	107	ENSGT01090000260040.b.b.a.f	ENSGT00390000003465.b.b.a	ENSGT00940000155788.l	ENSGT00940000163010.v	ENSGT00390000018415	ENSGT00940000154686.a	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.a	ENSGT00940000153393.A	ENSGT00510000048187	ENSGT00980000199189	ENSGT00390000000724.c.b.d	ENSGT00940000156554.b	ENSGT00390000002368	ENSGT00940000167426	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	112	ENSGT00390000018415	ENSGT00940000154686.a.b	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.a.b	ENSGT00940000154686.a.a	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.a.a.a	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.a.a.b	ENSGT00940000153393.A.s	ENSGT00390000000724.c.b.d.c	ENSGT00940000156554.b.b	ENSGT00390000002368.g	ENSGT01030000234510.a.a.a.a.a.a.h.b.a	ENSGT00390000018094.k.b	ENSGT00920000149145.n.a	ENSGT00940000155236.j.b.a	ENSGT00940000158307.g	ENSGT00530000063823.b.b.b.a ##22	ENSGT00940000156213.r.b	ENSGT00530000063698.b.c.a	ENSGT00940000157833.h.a.e	ENSGT00940000155019.a.a.b	ENSGT01000000214440.A.a.b.a.g.b.a.a.b	ENSGT00940000156139	ENSGT01100000263476.E.b.b.a.a.a.d	ENSGT00390000007371.e.j	ENSGT00940000154868.a.b.a.b	ENSGT00990000210032.b	ENSGT00390000016565.h.g	ENSGT00390000015719.c.d	ENSGT00940000155361.u	ENSGT00940000166269	ENSGT00940000155194.v.a.b
Goldfish	MODERN SPECIES	10	znf706 (ENSCARG00000005007)	grhl2b (ENSCARG00000004941)	ncaldb (ENSCARG00000004919)	ptpn2b (ENSCARG00000004885)	ENSCARG00000004869	seh1l (ENSCARG00000004837)	LDLRAD4 (ENSCARG00000004829)	fam210aa (ENSCARG00000004826)	rnmt (ENSCARG00000004822)	ENSCARG00000004818	mc5ra (ENSCARG00000004814)	cthrc1a (ENSCARG00000004800)	slc25a32a (ENSCARG00000004790)	ENSCARG00000004224	lrp12 (ENSCARG00000004136)	zfpm2b (ENSCARG00000004089) ##22	ENSCARG00000004073	srsf4 (ENSCARG00000004017)	ENSCARG00000003999	ENSCARG00000003993	EPB41 (ENSCARG00000002463)	ENSCARG00000002193	ccn2b (ENSCARG00000002174)	stx12 (ENSCARG00000002144)	trnau1apa (ENSCARG00000002099)	sh3bgrl3 (ENSCARG00000002062)	ENSCARG00000002052	ENSCARG00000002016	TMEM222 (ENSCARG00000009028)	tpbga (ENSCARG00000009011)	ENSCARG00000009007
Cyprininae_a	ANCESTRAL SPECIES	122	ENSGT00940000163010.v.a	ENSGT00390000018415	ENSGT00940000154686.a.b	ENSGT00940000154686.a.a	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.a.a.a	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.a.b.a.a.a.b	ENSGT00940000153393.A.s	ENSGT00390000000724.c.b.d.c	ENSGT00940000156554.b.b	ENSGT00390000002368.g	ENSGT01030000234510.a.a.a.a.a.a.h.b.a	ENSGT00390000018094.k.b	ENSGT00920000149145.n.a	ENSGT00940000155236.j.b.a	ENSGT00940000158307.g	ENSGT00530000063823.b.b.b.a ##22	ENSGT00940000156213.r.b	ENSGT00530000063698.b.c.a	ENSGT00940000157833.h.a.e	ENSGT00940000155019.a.a.b	ENSGT01000000214440.A.a.b.a.g.b.a.a.b	ENSGT00940000156139	ENSGT01100000263476.E.b.b.a.a.a.d	ENSGT00390000007371.e.j	ENSGT00940000154868.a.b.a.b	ENSGT00990000210032.b	ENSGT00390000016565.h.g.a	ENSGT00390000015719.c.d	ENSGT00940000155361.u	ENSGT00940000166269.c	ENSGT00940000155194.v.a.b
Common carp reference	MODERN SPECIES	12	ncaldb (ENSCCRG00000056177)	ptpn2b (ENSCCRG00000027381)	ENSCCRG00000027369	ENSCCRG00000027396	ENSCCRG00000027403	ENSCCRG00000068643	seh1l (ENSCCRG00000009538)	LDLRAD4 (ENSCCRG00000065330)	fam210aa (ENSCCRG00000053422)	rnmt (ENSCCRG00000000767)	mc5ra (ENSCCRG00000075946)	cthrc1a (ENSCCRG00000065195)	slc25a32a (ENSCCRG00000071499)	ENSCCRG00000047311	lrp12 (ENSCCRG00000006027)	ENSCCRG00000016587 ##22	srsf4 (ENSCCRG00000071320)	ENSCCRG00000075185	ENSCCRG00000040195	ccn2b (ENSCCRG00000046065)	stx12 (ENSCCRG00000046049)	trnau1apa (ENSCCRG00000046039)	sh3bgrl3 (ENSCCRG00000076762)	ENSCCRG00000078696	paqr7a (ENSCCRG00000055338)	ENSCCRG00000029063	tpbga (ENSCCRG00000046667)	ENSCCRG00000023131	ENSCCRG00000066166	nudc (ENSCCRG00000040777)	tbxta (ENSCCRG00000040747)
Golden-line barbel	MODERN SPECIES	681								ENSSGRG00000034066	epb41l3a (ENSSGRG00000034067)	TMEM200C (ENSSGRG00000034094)	ARHGAP28 (ENSSGRG00000034097)	ENSSGRG00000034099	lama1 (ENSSGRG00000034103)	ENSSGRG00000034140	lrp12 (ENSSGRG00000034958)	zfpm2b (ENSSGRG00000034960) ##22	srsf4 (ENSSGRG00000034962)	ENSSGRG00000034963
Cyprininae	ANCESTRAL SPECIES	498							ENSGT00390000000724.c.b.d.d	ENSGT00940000156554.b.a	ENSGT00390000002368.h	ENSGT01030000234510.a.a.a.a.a.a.h.b.b	ENSGT00390000018094.k.a	ENSGT00920000149145.n.b	ENSGT00940000155236.j.b.b	ENSGT00940000167426	ENSGT00940000158307.h	ENSGT00530000063823.b.b.b.b ##22	ENSGT00940000156213.r.a	ENSGT00530000063698.b.c.b	ENSGT00940000157833.h.a.f	ENSGT00940000155019.a.a.a	ENSGT01000000214440.A.a.b.a.g.b.a.a.a	ENSGT00940000157260.t	ENSGT00940000166598	ENSGT01100000263476.E.b.b.a.a.a.c	ENSGT00390000007371.e.i	ENSGT00940000154868.a.b.a.a	ENSGT00990000210032.a	ENSGT00390000016565.h.h
Goldfish	MODERN SPECIES	55	grhl2b (ENSCARG00000037957)	ncaldb (ENSCARG00000038022)	ENSCARG00000038034	psmg2 (ENSCARG00000038038)	ptpn2b (ENSCARG00000038058)	ENSCARG00000038114	LDLRAD4 (ENSCARG00000038153)	fam210aa (ENSCARG00000038176)	rnmt (ENSCARG00000038209)	mc5ra (ENSCARG00000038435)	cthrc1a (ENSCARG00000038453)	ENSCARG00000038474	slc25a32a (ENSCARG00000038482)	ENSCARG00000038569	lrp12 (ENSCARG00000040177)	zfpm2b (ENSCARG00000040234) ##22	srsf4 (ENSCARG00000040314)	ENSCARG00000040344	EPB41 (ENSCARG00000040512)	ccn2b (ENSCARG00000043975)	stx12 (ENSCARG00000044013)	SH3BGRL3 (ENSCARG00000044093)	paqr7a (ENSCARG00000044114)	ENSCARG00000044130	TMEM222 (ENSCARG00000044156)	tpbga (ENSCARG00000044312)	zgc:175136 (ENSCARG00000044335)	ENSCARG00000044359	nudc (ENSCARG00000044401)	tbxta (ENSCARG00000044478)	ENSCARG00000044556
Cyprininae_a	ANCESTRAL SPECIES	279						ENSGT00390000000724.c.b.d.d	ENSGT00940000156554.b.a	ENSGT00390000002368.h	ENSGT01030000234510.a.a.a.a.a.a.g	ENSGT01030000234510.a.a.a.a.a.a.h.b.b	ENSGT00390000018094.k.a	ENSGT00920000149145.n.b	ENSGT00940000155236.j.b.b	ENSGT00940000167426	ENSGT00940000158307.h	ENSGT00530000063823.b.b.b.b ##22	ENSGT00940000156213.r.a	ENSGT00530000063698.b.c.b	ENSGT00940000157833.h.a.f	ENSGT00940000155019.a.a.a	ENSGT01000000214440.A.a.b.a.g.b.a.a.a	ENSGT00940000157260.t	ENSGT00940000166598	ENSGT01100000263476.E.b.b.a.a.a.c	ENSGT00390000007371.e.i	ENSGT00940000154868.a.b.a.a	ENSGT00990000210032.a	ENSGT00390000016565.h.g.b	ENSGT00940000155361.v	ENSGT00940000166269.d	ENSGT00940000155194.v.a.a
Common carp reference	MODERN SPECIES	31	grhl2b (ENSCCRG00000027353)	ncaldb (ENSCCRG00000064623)	psmg2 (ENSCCRG00000032949)	ptpn2b (ENSCCRG00000032944)	ENSCCRG00000051410	LDLRAD4 (ENSCCRG00000079365)	fam210aa (ENSCCRG00000053565)	rnmt (ENSCCRG00000029572)	ENSCCRG00000071567	mc5ra (ENSCCRG00000000776)	cthrc1a (ENSCCRG00000009904)	slc25a32a (ENSCCRG00000046830)	ENSCCRG00000003152	ENSCCRG00000066770	lrp12 (ENSCCRG00000008875)	ENSCCRG00000016581 ##22	srsf4 (ENSCCRG00000016570)	ENSCCRG00000053730	ENSCCRG00000055287	ENSCCRG00000040171	ccn2b (ENSCCRG00000056600)	ENSCCRG00000076451	stx12 (ENSCCRG00000010237)	ENSCCRG00000064808	paqr7a (ENSCCRG00000010251)	ENSCCRG00000010263	ENSCCRG00000064663	tpbga (ENSCCRG00000010286)	ENSCCRG00000080559	zgc:175136 (ENSCCRG00000023084)	ENSCCRG00000023087
Golden-line barbel	MODERN SPECIES	1327												ENSSGRG00000036569	trub2 (ENSSGRG00000036549)	lrp12 (ENSSGRG00000036548)	ENSSGRG00000036547	zfpm2b (ENSSGRG00000036544) ##22	srsf4 (ENSSGRG00000036530)	ENSSGRG00000036527	ENSSGRG00000036049
Zebrafish	MODERN SPECIES	10	nudc (ENSDARG00000104837)	ENSDARG00000102756	ENSDARG00000101878	zgc:175136 (ENSDARG00000103024)	tpbga (ENSDARG00000099609)	TMEM222 (ENSDARG00000104097)	paqr7a (ENSDARG00000100462)	sh3bgrl3 (ENSDARG00000098075)	trnau1apa (ENSDARG00000101323)	stx12 (ENSDARG00000098813)	ccn2b (ENSDARG00000104292)	EPB41 (ENSDARG00000099283)	ENSDARG00000104274	srsf4 (ENSDARG00000105293)	lrp12 (ENSDARG00000098845)	zfpm2b (ENSDARG00000100560) ##22	ENSDARG00000102690	slc25a32a (ENSDARG00000089791)	cthrc1a (ENSDARG00000087198)	mc5ra (ENSDARG00000031348)	rnmt (ENSDARG00000070553)	fam210aa (ENSDARG00000035985)	LDLRAD4 (ENSDARG00000070555)	seh1l (ENSDARG00000004280)	ENSDARG00000030954	ptpn2b (ENSDARG00000035986)	psmg2 (ENSDARG00000035987)	ncaldb (ENSDARG00000011334)	grhl2b (ENSDARG00000061974)	znf706 (ENSDARG00000056307)	ywhaz (ENSDARG00000032575)
Euteleosteomorpha	ANCESTRAL SPECIES	416														ENSGT00940000167426	ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22	ENSGT00390000014398
Protacanthopterygii	ANCESTRAL SPECIES	404															ENSGT00940000158307	ENSGT00530000063823.b.b.b ##22
Salmoninae	ANCESTRAL SPECIES	471															ENSGT00940000158307.c	ENSGT00530000063823.b.b.b ##22	ENSGT00530000063023.A.b	ENSGT00390000007597	ENSGT00940000156934.k	ENSGT00940000160140.a.a	ENSGT01100000263484.B.b.b.a.a ##23	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b.c	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c.c	ENSGT00940000157616.j.a.c	ENSGT00940000157071	ENSGT00940000159356.a.b.c	ENSGT00390000014772.k
Salmoninae_a	ANCESTRAL SPECIES	5		ENSGT00940000170244.a	ENSGT01060000248556.A.a.a.b.n	ENSGT00940000155779.a.b.f	ENSGT00390000010806.hc.b	ENSGT00940000160769.f	ENSGT00390000002843.b	ENSGT00940000154708.a	ENSGT00940000177553	ENSGT00910000144759.i	ENSGT00510000049347.h.d	ENSGT00390000003781.e.b.b	ENSGT00950000183161.a.a.f	ENSGT00390000017503	ENSGT00940000158307.c	ENSGT00530000063823.b.b.b ##22	ENSGT00530000063023.A.b	ENSGT00390000007597	ENSGT00940000160140.a.a	ENSGT01100000263484.B.b.b.a.a ##23	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b.c	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c.c	ENSGT00940000157616.j.a.c	ENSGT00940000157071	ENSGT00940000159356.a.b.c	ENSGT00390000014772.k	ENSGT00940000160991.b.c.b
Salmo	ANCESTRAL SPECIES	40	ENSGT00940000170244.a	ENSGT01060000248556.A.a.a.b.n	ENSGT00940000155779.a.b.f	ENSGT00390000010806.hc.b	ENSGT00940000160769.f	ENSGT00390000002843.b	ENSGT00940000154708.a	ENSGT00940000177553	ENSGT00910000144759.i	ENSGT00910000144740.l	ENSGT00510000049347.h.d	ENSGT00390000003781.e.b.b	ENSGT00950000183161.a.a.f	ENSGT00390000017503	ENSGT00940000158307.c	ENSGT00530000063823.b.b.b ##22	ENSGT00530000063023.A.b	ENSGT00390000007597	ENSGT00940000160140.a.a	ENSGT01100000263484.B.b.b.a.a ##23	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b.c	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00940000157616.j.a.c	ENSGT00940000157071	ENSGT00940000159356.a.b.c	ENSGT00390000014772.k	ENSGT00940000160991.b.c.b	ENSGT00940000160991.b.d
River trout	MODERN SPECIES	27	ddah2 (ENSSTUG00000048080)	ENSSTUG00000048083	clic1 (ENSSTUG00000048089)	ENSSTUG00000048098	ENSSTUG00000048104	ENSSTUG00000048107	ENSSTUG00000048108	ENSSTUG00000048109	ENSSTUG00000048113	ENSSTUG00000048119	CSNK2B (ENSSTUG00000048123)	ENSSTUG00000048143	ENSSTUG00000048146	vps72a (ENSSTUG00000048150)	lrp12 (ENSSTUG00000048156)	ZFPM2 (ENSSTUG00000048179) ##22	DPY19L4 (ENSSTUG00000048183)	ints8 (ENSSTUG00000048250)	gdf6b (ENSSTUG00000048366)	trhrb (ENSSTUG00000048371) ##23	TMEM74 (ENSSTUG00000048385)	pleca (ENSSTUG00000048461)	ENSSTUG00000049269	ENSSTUG00000049273	slc52a2 (ENSSTUG00000049275)	nfatc1 (ENSSTUG00000049283)	atp9b (ENSSTUG00000049428)	sall3b (ENSSTUG00000050077)	ENSSTUG00000050079	ENSSTUG00000050081	ENSSTUG00000050085
Atlantic salmon	MODERN SPECIES	19	nrm (ENSSSAG00000078147)	ENSSSAG00000078149	ENSSSAG00000078157	ENSSSAG00000073701	ENSSSAG00000078329	ddah2 (ENSSSAG00000078370)	ENSSSAG00000099638	ENSSSAG00000112534	ENSSSAG00000078383	ENSSSAG00000097114	ENSSSAG00000078389	ENSSSAG00000121763	ENSSSAG00000078399	vps72a (ENSSSAG00000078445)	lrp12 (ENSSSAG00000078460)	ENSSSAG00000078480 ##22	dpy19l4 (ENSSSAG00000078481)	ints8 (ENSSSAG00000078517)	ENSSSAG00000108272	ENSSSAG00000102335	ENSSSAG00000078552 ##23	ENSSSAG00000083101	pleca (ENSSSAG00000078744)	ENSSSAG00000106630	fbxl6 (ENSSSAG00000080988)	ENSSSAG00000103671	slc52a2 (ENSSSAG00000080992)	nfatc1 (ENSSSAG00000054187)	atp9b (ENSSSAG00000054973)	ENSSSAG00000083594	ENSSSAG00000097810
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00390000010209.c.a.g	ENSGT00390000008146	ENSGT00940000170244.a	ENSGT01060000248556.A.a.a.b.n	ENSGT00940000155779.a.b.f	ENSGT00940000160769.f	ENSGT00390000002843.b.c	ENSGT00940000154708.a	ENSGT00940000177553	ENSGT00910000144759.i	ENSGT00510000049347.h.d	ENSGT00390000003781.e.b.b	ENSGT00950000183161.a.a.f	ENSGT00390000017503	ENSGT00940000158307.c	ENSGT00530000063823.b.b.b ##22	ENSGT00530000063023.A.b	ENSGT00390000007597	ENSGT00940000160140.a.a	ENSGT01100000263484.B.b.b.a.a ##23	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b.c	ENSGT00390000009358.d	ENSGT00390000009358.c	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c.c	ENSGT00940000157616.j.a.c	ENSGT00940000157071	ENSGT00940000159356.a.b.c	ENSGT00390000014772.k
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00950000183130.C	ENSGT00390000010209.c.a.g	ENSGT00390000008146	ENSGT00940000170244.a	ENSGT01060000248556.A.a.a.b.n	ENSGT00940000155779.a.b.f	ENSGT00940000160769.f	ENSGT00390000002843.b.c	ENSGT00940000154708.a	ENSGT00910000144759.i	ENSGT00510000049347.h.d	ENSGT00390000003781.e.b.b	ENSGT00950000183161.a.a.f	ENSGT00390000017503	ENSGT00940000158307.c	ENSGT00530000063823.b.b.b ##22	ENSGT00530000063023.A.b	ENSGT00390000007597	ENSGT01030000234822	ENSGT00940000160140.a.a	ENSGT01100000263484.B.b.b.a.a ##23	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b.c	ENSGT00390000009358.d	ENSGT00390000009358.c	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c.c	ENSGT00940000157616.j.a.c	ENSGT00940000157071	ENSGT00940000159356.a.b.c
Chinook salmon	MODERN SPECIES	4	exosc7 (ENSOTSG00005038386)	CDCP1 (ENSOTSG00005038383)	nrm (ENSOTSG00005038380)	ENSOTSG00005038379	cratb (ENSOTSG00005038305)	ppt2b (ENSOTSG00005038148)	rps5 (ENSOTSG00005038104)	ddah2 (ENSOTSG00005038103)	ENSOTSG00005038102	clic1 (ENSOTSG00005038101)	ENSOTSG00005038100	ENSOTSG00005038098	CSNK2B (ENSOTSG00005038083)	vps72a (ENSOTSG00005038079)	lrp12 (ENSOTSG00005038053)	ZFPM2 (ENSOTSG00005038049) ##22	DPY19L4 (ENSOTSG00005038033)	ints8 (ENSOTSG00005037988)	ENSOTSG00005037949	gdf6b (ENSOTSG00005037948)	trhrb (ENSOTSG00005037908) ##23	TMEM74 (ENSOTSG00005037868)	pleca (ENSOTSG00005007518)	ENSOTSG00005007447	ENSOTSG00005007445	ENSOTSG00005007443	slc52a2 (ENSOTSG00005007441)	ENSOTSG00005007438	nfatc1 (ENSOTSG00005007416)	atp9b (ENSOTSG00005006799)	sall3b (ENSOTSG00005006797)
Coho salmon	MODERN SPECIES	8	exosc7 (ENSOKIG00005023678)	ENSOKIG00005023653	nrm (ENSOKIG00005023646)	ENSOKIG00005023570	PPT2 (ENSOKIG00005022717)	ENSOKIG00005022529	ddah2 (ENSOKIG00005022511)	ENSOKIG00005022498	clic1 (ENSOKIG00005022472)	ENSOKIG00005022457	ENSOKIG00005022450	CSNK2B (ENSOKIG00005022429)	prrc2a (ENSOKIG00005022419)	vps72a (ENSOKIG00005022396)	lrp12 (ENSOKIG00005022335)	ZFPM2 (ENSOKIG00005022323) ##22	DPY19L4 (ENSOKIG00005021869)	ints8 (ENSOKIG00005021400)	ENSOKIG00005021308	gdf6b (ENSOKIG00005021304)	trhrb (ENSOKIG00005021296) ##23	TMEM74 (ENSOKIG00005021283)	pleca (ENSOKIG00005019878)	ENSOKIG00005019790	ENSOKIG00005019784	slc52a2 (ENSOKIG00005019781)	nfatc1 (ENSOKIG00005019714)	ENSOKIG00005019698	atp9b (ENSOKIG00005019161)	sall3b (ENSOKIG00005019084)	ENSOKIG00005019067
Rainbow trout	MODERN SPECIES	9	ddah2 (ENSOMYG00000026819)	ENSOMYG00000026844	clic1 (ENSOMYG00000026876)	ENSOMYG00000026905	ENSOMYG00000026917	ENSOMYG00000026924	ENSOMYG00000039358	ENSOMYG00000025952	ENSOMYG00000026936	ENSOMYG00000026965	ENSOMYG00000027022	ENSOMYG00000054881	ENSOMYG00000027108	ENSOMYG00000057015	ENSOMYG00000027160	ENSOMYG00000027248 ##22	ENSOMYG00000070665	ENSOMYG00000027405	ENSOMYG00000028249	ENSOMYG00000075193	ENSOMYG00000028508 ##23	ENSOMYG00000028517	ENSOMYG00000070159	pleca (ENSOMYG00000029880)	ENSOMYG00000033208	ENSOMYG00000033238	slc52a2 (ENSOMYG00000033241)	ENSOMYG00000033249	nfatc1 (ENSOMYG00000033281)	atp9b (ENSOMYG00000033875)	ENSOMYG00000041350
Huchen	DUPLICATION
Huchen	MODERN SPECIES	888															lrp12 (ENSHHUG00000027289)	ZFPM2 (ENSHHUG00000027307) ##22	DPY19L4 (ENSHHUG00000027310)	ints8 (ENSHHUG00000027342)	CCNE2 (ENSHHUG00000027393)	gdf6b (ENSHHUG00000027396)	trhrb (ENSHHUG00000027443) ##23	ENSHHUG00000027454
Huchen	MODERN SPECIES	72	pygo2 (ENSHHUG00000035595)	ENSHHUG00000035601	ENSHHUG00000035616	ubap2l (ENSHHUG00000035629)	PSMD4 (ENSHHUG00000035707)	znf687b (ENSHHUG00000035721)	ENSHHUG00000035726	ENSHHUG00000035729	ENSHHUG00000035738	ENSHHUG00000035740	ENSHHUG00000035747	ndufv1 (ENSHHUG00000035750)	ENSHHUG00000035756	ENSHHUG00000035761	lrp12 (ENSHHUG00000035791)	ZFPM2 (ENSHHUG00000035802) ##22	ENSHHUG00000035817	nudcd1 (ENSHHUG00000035833)
Spotted gar	MODERN SPECIES	649	seh1l (ENSLOCG00000009595)	CEP192 (ENSLOCG00000009581)	ldlrad4b (ENSLOCG00000009567)	fam210aa (ENSLOCG00000009549)	rnmt (ENSLOCG00000009540)	mc5ra (ENSLOCG00000018340)	mc2r (ENSLOCG00000009532)	fzd6 (ENSLOCG00000009524)	cthrc1a (ENSLOCG00000009514)	slc25a32a (ENSLOCG00000009507)	dcaf13 (ENSLOCG00000009498)	RIMS2 (ENSLOCG00000009471)	DCSTAMP (ENSLOCG00000009465)	dpys (ENSLOCG00000009447)	lrp12 (ENSLOCG00000009442)	zfpm2a (ENSLOCG00000009425) ##22	ENSLOCG00000009416	oxr1b (ENSLOCG00000009399)	sqlea (ENSLOCG00000009390)	ENSLOCG00000009381	rnf144b (ENSLOCG00000009375)	ENSLOCG00000009372	ccdc127a (ENSLOCG00000009365)	sdha (ENSLOCG00000009351)	ENSLOCG00000009343	ENSLOCG00000009333	ENSLOCG00000009326	ENSLOCG00000009318	psma2b (ENSLOCG00000009306)	ENSLOCG00000009291	ZHX1 (ENSLOCG00000009278)
Reedfish	MODERN SPECIES	542														dpys (ENSECRG00000017162)	lrp12 (ENSECRG00000017186)	zfpm2a (ENSECRG00000017228) ##22	ENSECRG00000017274	oxr1b (ENSECRG00000017345)	abrab (ENSECRG00000017432)	angpt1 (ENSECRG00000017489)	RSPO2 (ENSECRG00000017578)	eif3eb (ENSECRG00000017606)	emc2 (ENSECRG00000017690)	TMEM74 (ENSECRG00000017762)	trhrb (ENSECRG00000017777) ##23	nudcd1 (ENSECRG00000017784)	eny2 (ENSECRG00000017815)	ENSECRG00000017842	PKHD1L1 (ENSECRG00000017915)	PKHD1L1 (ENSECRG00000018143)	PKHD1L1 (ENSECRG00000018411)
Sarcopterygii	ANCESTRAL SPECIES	154							ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Amniota	ANCESTRAL SPECIES	3	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Sauria	ANCESTRAL SPECIES		ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Archosauria	ANCESTRAL SPECIES		ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Aves	ANCESTRAL SPECIES	9	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Neognathae	ANCESTRAL SPECIES		ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00940000156357	ENSGT00940000168212	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00940000168212	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Golden eagle	MODERN SPECIES	20	RRM2B (ENSACCG00020001110)	UBR5 (ENSACCG00020001028)	ENSACCG00020000952	KLF10 (ENSACCG00020000936)	AZIN1 (ENSACCG00020000896)	ATP6V1C1 (ENSACCG00020000862)	BAALC (ENSACCG00020000811)	FZD6 (ENSACCG00020000773)	CTHRC1 (ENSACCG00020000745)	SLC25A32 (ENSACCG00020000733)	DCAF13 (ENSACCG00020000718)	RIMS2 (ENSACCG00020000655)	DCSTAMP (ENSACCG00020000588)	DPYS (ENSACCG00020000536)	LRP12 (ENSACCG00020000479)	ZFPM2 (ENSACCG00020000460) ##22	OXR1 (ENSACCG00020000398)	ABRA (ENSACCG00020002814)	ANGPT1 (ENSACCG00020002801)	RSPO2 (ENSACCG00020002792)	EIF3E (ENSACCG00020002776)	EMC2 (ENSACCG00020002754)	TMEM74 (ENSACCG00020002743)	TRHR (ENSACCG00020002733) ##23	NUDCD1 (ENSACCG00020002674)	ENY2 (ENSACCG00020002655)	EBAG9 (ENSACCG00020002640)	SYBU (ENSACCG00020002627)	KCNV1 (ENSACCG00020002616)	ENSACCG00020002586	ENSACCG00020002570
Kakapo	MODERN SPECIES		RRM2B (ENSSHBG00005001510)	UBR5 (ENSSHBG00005001451)	ENSSHBG00005001422	KLF10 (ENSSHBG00005001410)	AZIN1 (ENSSHBG00005001390)	ATP6V1C1 (ENSSHBG00005001370)	BAALC (ENSSHBG00005001351)	FZD6 (ENSSHBG00005001342)	CTHRC1 (ENSSHBG00005001330)	SLC25A32 (ENSSHBG00005001322)	DCAF13 (ENSSHBG00005000242)	RIMS2 (ENSSHBG00005000162)	DCSTAMP (ENSSHBG00005018090)	DPYS (ENSSHBG00005018084)	LRP12 (ENSSHBG00005018082)	ZFPM2 (ENSSHBG00005018071) ##22	ENSSHBG00005018067	OXR1 (ENSSHBG00005018059)	ABRA (ENSSHBG00005018049)	ANGPT1 (ENSSHBG00005018041)	RSPO2 (ENSSHBG00005018037)	EIF3E (ENSSHBG00005018030)	EMC2 (ENSSHBG00005018024)	TMEM74 (ENSSHBG00005018015)	TRHR (ENSSHBG00005018013) ##23	NUDCD1 (ENSSHBG00005018007)	ENY2 (ENSSHBG00005018005)	EBAG9 (ENSSHBG00005018002)	SYBU (ENSSHBG00005017998)	KCNV1 (ENSSHBG00005017993)	CSMD3 (ENSSHBG00005017584)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000156357	ENSGT00940000168212	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Great tit	MODERN SPECIES	11	NCALD (ENSPMJG00000007538)	RRM2B (ENSPMJG00000007563)	UBR5 (ENSPMJG00000007967)	KLF10 (ENSPMJG00000010151)	AZIN1 (ENSPMJG00000010153)	ATP6V1C1 (ENSPMJG00000010205)	BAALC (ENSPMJG00000010206)	FZD6 (ENSPMJG00000010208)	CTHRC1 (ENSPMJG00000010210)	SLC25A32 (ENSPMJG00000010211)	DCAF13 (ENSPMJG00000010212)	RIMS2 (ENSPMJG00000010329)	DCSTAMP (ENSPMJG00000010337)	DPYS (ENSPMJG00000010338)	LRP12 (ENSPMJG00000010340)	ZFPM2 (ENSPMJG00000010699) ##22	OXR1 (ENSPMJG00000010745)	ABRA (ENSPMJG00000010755)	ANGPT1 (ENSPMJG00000010790)	RSPO2 (ENSPMJG00000010809)	EIF3E (ENSPMJG00000010814)	EMC2 (ENSPMJG00000010847)	TMEM74 (ENSPMJG00000010848)	TRHR (ENSPMJG00000010849) ##23	NUDCD1 (ENSPMJG00000010894)	ENY2 (ENSPMJG00000010897)	EBAG9 (ENSPMJG00000010904)	SYBU (ENSPMJG00000010909)	KCNV1 (ENSPMJG00000010913)	CSMD3 (ENSPMJG00000010983)	TRPS1 (ENSPMJG00000011066)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000156357	ENSGT00940000168212	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00940000156357	ENSGT00940000168212	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00940000156357	ENSGT00940000168212	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Common canary	MODERN SPECIES		ENSSCAG00000006053	KLF10 (ENSSCAG00000006068)	AZIN1 (ENSSCAG00000006075)	ATP6V1C1 (ENSSCAG00000006085)	ENSSCAG00000006091	FZD6 (ENSSCAG00000006097)	CTHRC1 (ENSSCAG00000006102)	SLC25A32 (ENSSCAG00000006106)	DCAF13 (ENSSCAG00000006116)	ENSSCAG00000006134	ENSSCAG00000006146	ENSSCAG00000006157	DCSTAMP (ENSSCAG00000006175)	DPYS (ENSSCAG00000006182)	LRP12 (ENSSCAG00000006189)	ZFPM2 (ENSSCAG00000006205) ##22	OXR1 (ENSSCAG00000006238)	ABRA (ENSSCAG00000006251)	ANGPT1 (ENSSCAG00000006260)	RSPO2 (ENSSCAG00000006265)	EIF3E (ENSSCAG00000006268)	EMC2 (ENSSCAG00000006278)	TMEM74 (ENSSCAG00000006291)	TRHR (ENSSCAG00000006297) ##23	NUDCD1 (ENSSCAG00000006301)	ENY2 (ENSSCAG00000006311)	EBAG9 (ENSSCAG00000006319)	SYBU (ENSSCAG00000006323)	KCNV1 (ENSSCAG00000006354)	ENSSCAG00000006371	ENSSCAG00000006377
Zebra finch	MODERN SPECIES	12	RRM2B (ENSTGUG00000012093)	UBR5 (ENSTGUG00000012099)	ENSTGUG00000012119	KLF10 (ENSTGUG00000012120)	AZIN1 (ENSTGUG00000012128)	ATP6V1C1 (ENSTGUG00000012137)	BAALC (ENSTGUG00000028617)	FZD6 (ENSTGUG00000012145)	CTHRC1 (ENSTGUG00000012148)	SLC25A32 (ENSTGUG00000023173)	DCAF13 (ENSTGUG00000012152)	RIMS2 (ENSTGUG00000012161)	DCSTAMP (ENSTGUG00000012176)	DPYS (ENSTGUG00000012178)	LRP12 (ENSTGUG00000012185)	ZFPM2 (ENSTGUG00000012190) ##22	OXR1 (ENSTGUG00000012194)	ABRA (ENSTGUG00000012207)	ANGPT1 (ENSTGUG00000012208)	RSPO2 (ENSTGUG00000012214)	EIF3E (ENSTGUG00000012216)	ENSTGUG00000028641	EMC2 (ENSTGUG00000012231)	TMEM74 (ENSTGUG00000022792)	TRHR (ENSTGUG00000012244) ##23	NUDCD1 (ENSTGUG00000012245)	ENY2 (ENSTGUG00000026246)	EBAG9 (ENSTGUG00000012252)	SYBU (ENSTGUG00000012263)	KCNV1 (ENSTGUG00000012266)	ENSTGUG00000027711
Medium ground finch	MODERN SPECIES	56	NCALD (ENSGFOG00000013073)	RRM2B (ENSGFOG00000013079)	UBR5 (ENSGFOG00000013101)	KLF10 (ENSGFOG00000013188)	AZIN1 (ENSGFOG00000013190)	ATP6V1C1 (ENSGFOG00000013195)	BAALC (ENSGFOG00000013201)	FZD6 (ENSGFOG00000013206)	CTHRC1 (ENSGFOG00000013209)	SLC25A32 (ENSGFOG00000013216)	DCAF13 (ENSGFOG00000013217)	RIMS2 (ENSGFOG00000013219)	DCSTAMP (ENSGFOG00000013237)	DPYS (ENSGFOG00000013246)	LRP12 (ENSGFOG00000013272)	ZFPM2 (ENSGFOG00000013277) ##22	OXR1 (ENSGFOG00000013282)	ABRA (ENSGFOG00000013287)	ANGPT1 (ENSGFOG00000013289)	RSPO2 (ENSGFOG00000013292)	EIF3E (ENSGFOG00000013296)	EMC2 (ENSGFOG00000013301)	TMEM74 (ENSGFOG00000013303)	TRHR (ENSGFOG00000013305) ##23	NUDCD1 (ENSGFOG00000013306)	ENY2 (ENSGFOG00000013307)
Flycatcher	MODERN SPECIES	11	GRHL2 (ENSFALG00000005879)	NCALD (ENSFALG00000005886)	RRM2B (ENSFALG00000005893)	UBR5 (ENSFALG00000005901)	KLF10 (ENSFALG00000005917)	AZIN1 (ENSFALG00000005919)	ATP6V1C1 (ENSFALG00000005922)	FZD6 (ENSFALG00000005942)	ENSFALG00000026756	ENSFALG00000023179	SLC25A32 (ENSFALG00000005964)	DCAF13 (ENSFALG00000005982)	RIMS2 (ENSFALG00000005999)	DCSTAMP (ENSFALG00000006034)	LRP12 (ENSFALG00000006045)	ZFPM2 (ENSFALG00000006051) ##22	OXR1 (ENSFALG00000006066)	ABRA (ENSFALG00000025534)	ANGPT1 (ENSFALG00000006084)	RSPO2 (ENSFALG00000006088)	EIF3E (ENSFALG00000006092)	EMC2 (ENSFALG00000027310)	TMEM74 (ENSFALG00000014949)	TRHR (ENSFALG00000006115) ##23	NUDCD1 (ENSFALG00000006119)	ENY2 (ENSFALG00000006123)	EBAG9 (ENSFALG00000022897)	SYBU (ENSFALG00000006139)	KCNV1 (ENSFALG00000002264)	CSMD3 (ENSFALG00000002275)	TRPS1 (ENSFALG00000002296)
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Anatidae	ANCESTRAL SPECIES	3	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Pink-footed goose	MODERN SPECIES	16								FZD6 (ENSABRG00000014521)	CTHRC1 (ENSABRG00000014519)	SLC25A32 (ENSABRG00000014513)	DCAF13 (ENSABRG00000014505)	RIMS2 (ENSABRG00000014493)	DCSTAMP (ENSABRG00000014486)	DPYS (ENSABRG00000014479)	LRP12 (ENSABRG00000014469)	ZFPM2 (ENSABRG00000014459) ##22	OXR1 (ENSABRG00000014400)	ABRA (ENSABRG00000014378)	ANGPT1 (ENSABRG00000014336)	RSPO2 (ENSABRG00000014320)	EIF3E (ENSABRG00000014310)	EMC2 (ENSABRG00000014305)	TMEM74 (ENSABRG00000014296)	ENSABRG00000014290	TRHR (ENSABRG00000014288) ##23	NUDCD1 (ENSABRG00000014278)	ENY2 (ENSABRG00000014276)	EBAG9 (ENSABRG00000014271)	SYBU (ENSABRG00000014269)	KCNV1 (ENSABRG00000014257)	ENSABRG00000014239
Duck	MODERN SPECIES	10	ENSAPLG00000004191	KLF10 (ENSAPLG00000028539)	AZIN1 (ENSAPLG00000003774)	ATP6V1C1 (ENSAPLG00000003354)	BAALC (ENSAPLG00000019949)	FZD6 (ENSAPLG00000003220)	CTHRC1 (ENSAPLG00000003081)	SLC25A32 (ENSAPLG00000003013)	DCAF13 (ENSAPLG00000002811)	ENSAPLG00000017613	ENSAPLG00000026265	ENSAPLG00000029961	DCSTAMP (ENSAPLG00000002672)	DPYS (ENSAPLG00000001792)	LRP12 (ENSAPLG00000000692)	ZFPM2 (ENSAPLG00000015698) ##22	ABRA (ENSAPLG00000007622)	OXR1 (ENSAPLG00000014816)	ANGPT1 (ENSAPLG00000007378)	RSPO2 (ENSAPLG00000007280)	EIF3E (ENSAPLG00000006091)	EMC2 (ENSAPLG00000006617)	TMEM74 (ENSAPLG00000006945)	NUDCD1 (ENSAPLG00000004835)	ENY2 (ENSAPLG00000004824)	EBAG9 (ENSAPLG00000003002)	SYBU (ENSAPLG00000002942)	KCNV1 (ENSAPLG00000002909)	ENSAPLG00000029680	ENSAPLG00000020799	ENSAPLG00000017297
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B.fb	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B.fb	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000164318	ENSGT00940000157893
Chicken	MODERN SPECIES	11	RRM2B (ENSGALG00010011915)	UBR5 (ENSGALG00010012024)	ODF1 (ENSGALG00010012039)	KLF10 (ENSGALG00010012052)	AZIN1 (ENSGALG00010012061)	ATP6V1C1 (ENSGALG00010010906)	BAALC (ENSGALG00010010912)	FZD6 (ENSGALG00010010938)	CTHRC1 (ENSGALG00010012868)	SLC25A32 (ENSGALG00010012877)	DCAF13 (ENSGALG00010012883)	RIMS2 (ENSGALG00010012954)	DCSTAMP (ENSGALG00010013013)	DPYS (ENSGALG00010013019)	LRP12 (ENSGALG00010013041)	ZFPM2 (ENSGALG00010013100) ##22	OXR1 (ENSGALG00010013177)	ABRA (ENSGALG00010013191)	ANGPT1 (ENSGALG00010011001)	RSPO2 (ENSGALG00010011178)	EIF3E (ENSGALG00010007926)	EMC2 (ENSGALG00010007952)	TMEM74 (ENSGALG00010007966)	TRHR (ENSGALG00010007990) ##23	NUDCD1 (ENSGALG00010007996)	ENY2 (ENSGALG00010008004)	EBAG9 (ENSGALG00010008433)	SYBU (ENSGALG00010008438)	KCNV1 (ENSGALG00010008063)	ENSGALG00010008068	CSMD3 (ENSGALG00010008473)
Turkey	MODERN SPECIES	22	ENSMGAG00000012427	ENSMGAG00000012428	ENY2 (ENSMGAG00000021092)	ENSMGAG00000012424	ENSMGAG00000018574	ENSMGAG00000012422 ##23	ENSMGAG00000012419	ENSMGAG00000012412	ENSMGAG00000020755	ENSMGAG00000012388	ENSMGAG00000021406	ENSMGAG00000012382	ENSMGAG00000012378	ENSMGAG00000019518	ENSMGAG00000012375	ENSMGAG00000012374 ##22	LRP12 (ENSMGAG00000012372)	ENSMGAG00000012369	ENSMGAG00000012366	ENSMGAG00000018712	ENSMGAG00000012361	ENSMGAG00000017639	TRPS1 (ENSMGAG00000012464)	EIF3H (ENSMGAG00000012467)	UTP23 (ENSMGAG00000021793)	RAD21 (ENSMGAG00000012475)	ENSMGAG00000022496	SLC30A8 (ENSMGAG00000012488)	MED30 (ENSMGAG00000012493)	EXT1 (ENSMGAG00000012494)	SAMD12 (ENSMGAG00000012500)
Japanese quail	MODERN SPECIES	11	LRP12 (ENSCJPG00005000976)	DPYS (ENSCJPG00005001007)	DCSTAMP (ENSCJPG00005001023)	RIMS2 (ENSCJPG00005001055)	DCAF13 (ENSCJPG00005001143)	SLC25A32 (ENSCJPG00005001508)	CTHRC1 (ENSCJPG00005001512)	FZD6 (ENSCJPG00005001515)	BAALC (ENSCJPG00005001520)	ATP6V1C1 (ENSCJPG00005001522)	AZIN1 (ENSCJPG00005001526)	KLF10 (ENSCJPG00005001533)	ODF1 (ENSCJPG00005001739)	UBR5 (ENSCJPG00005001900)	RRM2B (ENSCJPG00005004893)	ZFPM2 (ENSCJPG00005005084) ##22	OXR1 (ENSCJPG00005005095)	ABRA (ENSCJPG00005005111)	ANGPT1 (ENSCJPG00005005113)	RSPO2 (ENSCJPG00005005118)	EIF3E (ENSCJPG00005005119)	EMC2 (ENSCJPG00005005138)	TMEM74 (ENSCJPG00005005141)	TRHR (ENSCJPG00005005145) ##23	NUDCD1 (ENSCJPG00005005146)	ENSCJPG00005005150	EBAG9 (ENSCJPG00005005155)	SYBU (ENSCJPG00005005178)	KCNV1 (ENSCJPG00005005180)	CSMD3 (ENSCJPG00005005227)	TRPS1 (ENSCJPG00005005268)
African ostrich	MODERN SPECIES	1018																ZFPM2 (ENSSCUG00000012664) ##22
Australian saltwater crocodile	MODERN SPECIES		RRM2B (ENSCPRG00005003945)	UBR5 (ENSCPRG00005004043)	ODF1 (ENSCPRG00005005123)	KLF10 (ENSCPRG00005005151)	AZIN1 (ENSCPRG00005005161)	ATP6V1C1 (ENSCPRG00005005169)	BAALC (ENSCPRG00005005221)	FZD6 (ENSCPRG00005005244)	CTHRC1 (ENSCPRG00005005251)	SLC25A32 (ENSCPRG00005005255)	DCAF13 (ENSCPRG00005005262)	RIMS2 (ENSCPRG00005005525)	DCSTAMP (ENSCPRG00005006479)	DPYS (ENSCPRG00005006485)	LRP12 (ENSCPRG00005006508)	ZFPM2 (ENSCPRG00005006594) ##22	OXR1 (ENSCPRG00005006734)	ABRA (ENSCPRG00005006767)	ANGPT1 (ENSCPRG00005006811)	RSPO2 (ENSCPRG00005006925)	EIF3E (ENSCPRG00005006965)	EMC2 (ENSCPRG00005007018)	TMEM74 (ENSCPRG00005007024)	TRHR (ENSCPRG00005007063) ##23	NUDCD1 (ENSCPRG00005007101)	ENSCPRG00005007104	EBAG9 (ENSCPRG00005007111)	SYBU (ENSCPRG00005007115)	KCNV1 (ENSCPRG00005007154)	ENSCPRG00005007184	ENSCPRG00005007189
Cryptodira	ANCESTRAL SPECIES	22	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Testudinoidea	ANCESTRAL SPECIES	16	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Emydidae	ANCESTRAL SPECIES	15	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT01000000217029	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000166312.b.b	ENSGT00940000155549.b
Three-toed box turtle	MODERN SPECIES	24	UBR5 (ENSTMTG00000002244)	ENSTMTG00000002838	KLF10 (ENSTMTG00000002842)	AZIN1 (ENSTMTG00000002845)	ATP6V1C1 (ENSTMTG00000002852)	BAALC (ENSTMTG00000002862)	FZD6 (ENSTMTG00000002885)	CTHRC1 (ENSTMTG00000002946)	SLC25A32 (ENSTMTG00000002951)	DCAF13 (ENSTMTG00000002959)	ENSTMTG00000002966	ENSTMTG00000002969	DCSTAMP (ENSTMTG00000002973)	DPYS (ENSTMTG00000002975)	LRP12 (ENSTMTG00000002985)	ZFPM2 (ENSTMTG00000002991) ##22	OXR1 (ENSTMTG00000003009)	ABRA (ENSTMTG00000003059)	ANGPT1 (ENSTMTG00000003073)	RSPO2 (ENSTMTG00000003090)	EIF3E (ENSTMTG00000003110)	EMC2 (ENSTMTG00000003134)	TMEM74 (ENSTMTG00000003149)	TRHR (ENSTMTG00000003159) ##23	NUDCD1 (ENSTMTG00000003166)	ENY2 (ENSTMTG00000003187)	EBAG9 (ENSTMTG00000003195)	SYBU (ENSTMTG00000003208)	KCNV1 (ENSTMTG00000003224)	ENSTMTG00000003238	ENSTMTG00000003257
painted turtle	MODERN SPECIES	702	EIF3H (ENSCPBG00000001641)	UTP23 (ENSCPBG00000001634)	RAD21 (ENSCPBG00000001623)	SLC30A8 (ENSCPBG00000001584)	RSPO2 (ENSCPBG00000001563)	EIF3E (ENSCPBG00000001145)	EMC2 (ENSCPBG00000001107)	TMEM74 (ENSCPBG00000001098)	TRHR (ENSCPBG00000001074) ##23	NUDCD1 (ENSCPBG00000001051)	ENY2 (ENSCPBG00000001037)	EBAG9 (ENSCPBG00000001026)	SYBU (ENSCPBG00000001002)	ENSCPBG00000000982	ENSCPBG00000000962	ZFPM2 (ENSCPBG00000000875) ##22	OXR1 (ENSCPBG00000000716)	ABRA (ENSCPBG00000000685)	ANGPT1 (ENSCPBG00000000642)
Testudinidae	ANCESTRAL SPECIES	27	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Goode s thornscrub tortoise	MODERN SPECIES	11	RRM2B (ENSGEVG00005009750)	UBR5 (ENSGEVG00005009817)	KLF10 (ENSGEVG00005010064)	AZIN1 (ENSGEVG00005010085)	ATP6V1C1 (ENSGEVG00005010130)	BAALC (ENSGEVG00005010186)	FZD6 (ENSGEVG00005010354)	CTHRC1 (ENSGEVG00005010409)	SLC25A32 (ENSGEVG00005010451)	DCAF13 (ENSGEVG00005010568)	RIMS2 (ENSGEVG00005010653)	ENSGEVG00005010912	DCSTAMP (ENSGEVG00005010946)	DPYS (ENSGEVG00005010971)	LRP12 (ENSGEVG00005011073)	ZFPM2 (ENSGEVG00005011133) ##22	OXR1 (ENSGEVG00005011323)	ABRA (ENSGEVG00005011389)	ANGPT1 (ENSGEVG00005011477)	RSPO2 (ENSGEVG00005011632)	EIF3E (ENSGEVG00005011690)	EMC2 (ENSGEVG00005011776)	TMEM74 (ENSGEVG00005011886)	TRHR (ENSGEVG00005011919) ##23	NUDCD1 (ENSGEVG00005011966)	ENY2 (ENSGEVG00005012033)	EBAG9 (ENSGEVG00005012068)	SYBU (ENSGEVG00005012100)	KCNV1 (ENSGEVG00005012166)	ENSGEVG00005012224	ENSGEVG00005012342
Abingdon island giant tortoise	MODERN SPECIES	585																ZFPM2 (ENSCABG00000001690) ##22	ENSCABG00000001679	EIF1AY (ENSCABG00000001672)	MAP7D2 (ENSCABG00000001649)	ENSCABG00000001643	SH3KBP1 (ENSCABG00000001638)	MAP3K15 (ENSCABG00000001631)	ENSCABG00000001623
Chinese turtle	MODERN SPECIES	2025																ZFPM2 (ENSPSIG00000004514) ##22	ENSPSIG00000004479
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000157893
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000155026.k.b	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000155026.k.b	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000155026.k.b	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Elapidae_a	ANCESTRAL SPECIES	44	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000178526	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000155026.k.b	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Acanthophiinae	ANCESTRAL SPECIES	15	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000178526	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000155026.k.b	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Mainland tiger snake	MODERN SPECIES	5	UBR5 (ENSNSUG00000012424)	ODF1 (ENSNSUG00000012423)	KLF10 (ENSNSUG00000012422)	AZIN1 (ENSNSUG00000012421)	ATP6V1C1 (ENSNSUG00000012420)	ENSNSUG00000012419	FZD6 (ENSNSUG00000012418)	CTHRC1 (ENSNSUG00000012417)	SLC25A32 (ENSNSUG00000012403)	DCAF13 (ENSNSUG00000012358)	ENSNSUG00000012357	RIMS2 (ENSNSUG00000012355)	DCSTAMP (ENSNSUG00000012354)	DPYS (ENSNSUG00000012351)	LRP12 (ENSNSUG00000012350)	ZFPM2 (ENSNSUG00000012349) ##22	OXR1 (ENSNSUG00000012324)	ABRA (ENSNSUG00000012323)	ENSNSUG00000012322	ANGPT1 (ENSNSUG00000012321)	RSPO2 (ENSNSUG00000012319)	EIF3E (ENSNSUG00000012317)	EMC2 (ENSNSUG00000012313)	TMEM74 (ENSNSUG00000012310)	TRHR (ENSNSUG00000012308) ##23	NUDCD1 (ENSNSUG00000012307)	ENY2 (ENSNSUG00000012305)	EBAG9 (ENSNSUG00000012304)	SYBU (ENSNSUG00000012303)	KCNV1 (ENSNSUG00000012302)	ENSNSUG00000012299
Eastern brown snake	MODERN SPECIES	22	UBR5 (ENSPTXG00000001102)	ODF1 (ENSPTXG00000001136)	KLF10 (ENSPTXG00000001139)	AZIN1 (ENSPTXG00000001143)	ATP6V1C1 (ENSPTXG00000001149)	ENSPTXG00000001155	FZD6 (ENSPTXG00000001159)	CTHRC1 (ENSPTXG00000001163)	SLC25A32 (ENSPTXG00000001167)	DCAF13 (ENSPTXG00000001174)	ENSPTXG00000001181	RIMS2 (ENSPTXG00000001188)	DCSTAMP (ENSPTXG00000001204)	DPYS (ENSPTXG00000001227)	LRP12 (ENSPTXG00000001560)	ZFPM2 (ENSPTXG00000001563) ##22	OXR1 (ENSPTXG00000001569)	ABRA (ENSPTXG00000001575)	ENSPTXG00000001590	ANGPT1 (ENSPTXG00000001597)	RSPO2 (ENSPTXG00000001601)	EIF3E (ENSPTXG00000001604)	EMC2 (ENSPTXG00000001607)	TMEM74 (ENSPTXG00000001609)	TRHR (ENSPTXG00000001611) ##23	NUDCD1 (ENSPTXG00000001614)	ENY2 (ENSPTXG00000001616)	EBAG9 (ENSPTXG00000001619)	KCNV1 (ENSPTXG00000001622)	ENSPTXG00000001625	ENSPTXG00000001628
Blue-lipped sea krait	MODERN SPECIES	10524																ZFPM2 (ENSLLTG00000016509) ##22
Indian cobra	MODERN SPECIES	2	UBR5 (ENSNNAG00000010476)	ODF1 (ENSNNAG00000011845)	KLF10 (ENSNNAG00000011882)	AZIN1 (ENSNNAG00000011907)	ATP6V1C1 (ENSNNAG00000011954)	BAALC (ENSNNAG00000012032)	FZD6 (ENSNNAG00000012049)	CTHRC1 (ENSNNAG00000012073)	SLC25A32 (ENSNNAG00000012089)	DCAF13 (ENSNNAG00000012112)	RIMS2 (ENSNNAG00000012354)	ENSNNAG00000014070	ENSNNAG00000014095	DPYS (ENSNNAG00000014112)	LRP12 (ENSNNAG00000014138)	ZFPM2 (ENSNNAG00000014169) ##22	OXR1 (ENSNNAG00000014228)	ABRA (ENSNNAG00000014350)	ENSNNAG00000007543	ENSNNAG00000007576	ANGPT1 (ENSNNAG00000007671)	RSPO2 (ENSNNAG00000007685)	EIF3E (ENSNNAG00000007734)	EMC2 (ENSNNAG00000007831)	TMEM74 (ENSNNAG00000007905)	TRHR (ENSNNAG00000007938) ##23	NUDCD1 (ENSNNAG00000007951)	ENSNNAG00000008040	EBAG9 (ENSNNAG00000008106)	SYBU (ENSNNAG00000008171)	KCNV1 (ENSNNAG00000008201)
Lizard	MODERN SPECIES	3	UBR5 (ENSACAG00000008995)	ODF1 (ENSACAG00000009176)	KLF10 (ENSACAG00000009177)	azin1 (ENSACAG00000009207)	ATP6V1C1 (ENSACAG00000009273)	BAALC (ENSACAG00000035071)	FZD6 (ENSACAG00000009364)	CTHRC1 (ENSACAG00000009420)	SLC25A32 (ENSACAG00000009436)	DCAF13 (ENSACAG00000009465)	ENSACAG00000038817	RIMS2 (ENSACAG00000009511)	DCSTAMP (ENSACAG00000009660)	DPYS (ENSACAG00000009666)	LRP12 (ENSACAG00000009840)	ZFPM2 (ENSACAG00000009858) ##22	OXR1 (ENSACAG00000009882)	ABRA (ENSACAG00000009983)	ENSACAG00000010012	ANGPT1 (ENSACAG00000010050)	RSPO2 (ENSACAG00000010188)	EIF3E (ENSACAG00000010203)	EMC2 (ENSACAG00000010310)	TMEM74 (ENSACAG00000010417)	TRHR (ENSACAG00000010418) ##23	NUDCD1 (ENSACAG00000002434)	eny2 (ENSACAG00000038384)	EBAG9 (ENSACAG00000002489)	SYBU (ENSACAG00000002527)	KCNV1 (ENSACAG00000002558)	ENSACAG00000037289
Laterata	ANCESTRAL SPECIES	5	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000155026.k.b.b	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Common wall lizard	MODERN SPECIES	15	UBR5 (ENSPMRG00000020286)	ODF1 (ENSPMRG00000020203)	KLF10 (ENSPMRG00000020197)	AZIN1 (ENSPMRG00000020192)	ATP6V1C1 (ENSPMRG00000020063)	ENSPMRG00000020028	FZD6 (ENSPMRG00000020023)	CTHRC1 (ENSPMRG00000020020)	SLC25A32 (ENSPMRG00000020012)	DCAF13 (ENSPMRG00000020001)	RIMS2 (ENSPMRG00000019938)	DCSTAMP (ENSPMRG00000019918)	DPYS (ENSPMRG00000019912)	LRP12 (ENSPMRG00000019905)	ENSPMRG00000019901	ZFPM2 (ENSPMRG00000019894) ##22	OXR1 (ENSPMRG00000019833)	ABRA (ENSPMRG00000019816)	ENSPMRG00000019812	ENSPMRG00000019784	ENSPMRG00000019775	ANGPT1 (ENSPMRG00000019770)	RSPO2 (ENSPMRG00000019755)	EIF3E (ENSPMRG00000019701)	EMC2 (ENSPMRG00000019659)	TMEM74 (ENSPMRG00000019650)	ENSPMRG00000019647	TRHR (ENSPMRG00000019639) ##23	NUDCD1 (ENSPMRG00000019624)	ENY2 (ENSPMRG00000019611)	EBAG9 (ENSPMRG00000019596)
Argentine black and white tegu	MODERN SPECIES	13	AZIN1 (ENSSMRG00000021142)	ATP6V1C1 (ENSSMRG00000021141)	ENSSMRG00000021140	BAALC (ENSSMRG00000021139)	FZD6 (ENSSMRG00000021138)	CTHRC1 (ENSSMRG00000021137)	ENSSMRG00000021136	SLC25A32 (ENSSMRG00000021135)	DCAF13 (ENSSMRG00000021134)	ENSSMRG00000021132	RIMS2 (ENSSMRG00000021131)	ENSSMRG00000021130	DCSTAMP (ENSSMRG00000021129)	DPYS (ENSSMRG00000021128)	LRP12 (ENSSMRG00000021127)	ZFPM2 (ENSSMRG00000021126) ##22
tuatara	MODERN SPECIES	177																ZFPM2 (ENSSPUG00000009479) ##22
Mammalia	ANCESTRAL SPECIES	3	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Theria	ANCESTRAL SPECIES	7	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Eutheria	ANCESTRAL SPECIES	15	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Boreoeutheria	ANCESTRAL SPECIES	19	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Euarchontoglires	ANCESTRAL SPECIES	19	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Euarchontoglires_A	ANCESTRAL SPECIES	19	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Tree shrew	MODERN SPECIES	976																ZFPM2 (ENSTBEG00000000668) ##22
Glires	ANCESTRAL SPECIES	20	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Lagomorpha	ANCESTRAL SPECIES	46												ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Rabbit	MODERN SPECIES	14	ODF1 (ENSOCUG00000017222)	KLF10 (ENSOCUG00000016141)	AZIN1 (ENSOCUG00000015196)	ATP6V1C1 (ENSOCUG00000017814)	ENSOCUG00000013717	ENSOCUG00000021507	FZD6 (ENSOCUG00000009180)	DCAF13 (ENSOCUG00000009197)	SLC25A32 (ENSOCUG00000009191)	RIMS2 (ENSOCUG00000011775)	ENSOCUG00000033506	ENSOCUG00000025731	ENSOCUG00000004398	DPYS (ENSOCUG00000011148)	LRP12 (ENSOCUG00000002245)	ZFPM2 (ENSOCUG00000005930) ##22	OXR1 (ENSOCUG00000000462)	ABRA (ENSOCUG00000006570)	ENSOCUG00000023959	ANGPT1 (ENSOCUG00000003722)	RSPO2 (ENSOCUG00000000779)	EIF3E (ENSOCUG00000008050)	ENSOCUG00000027337	EMC2 (ENSOCUG00000002461)	TMEM74 (ENSOCUG00000000175)	ENSOCUG00000037614	ENSOCUG00000039638	TRHR (ENSOCUG00000003833) ##23	NUDCD1 (ENSOCUG00000004673)	ENY2 (ENSOCUG00000030501)	PKHD1L1 (ENSOCUG00000004688)
Rodentia	ANCESTRAL SPECIES	19	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Muroidea	ANCESTRAL SPECIES	14	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Cricetinae	ANCESTRAL SPECIES	38	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Golden Hamster	MODERN SPECIES	651	Rrm2b (ENSMAUG00000018657)	Ubr5 (ENSMAUG00000018902)	Odf1 (ENSMAUG00000009381)	Klf10 (ENSMAUG00000000400)	ENSMAUG00000019486	Atp6v1c1 (ENSMAUG00000018399)	Baalc (ENSMAUG00000017382)	Fzd6 (ENSMAUG00000000110)	Cthrc1 (ENSMAUG00000018877)	Slc25a32 (ENSMAUG00000018679)	Dcaf13 (ENSMAUG00000017580)	Rims2 (ENSMAUG00000012702)	Dcstamp (ENSMAUG00000011307)	Dpys (ENSMAUG00000016256)	Lrp12 (ENSMAUG00000015703)	Zfpm2 (ENSMAUG00000019448) ##22	ENSMAUG00000015764	Abra (ENSMAUG00000011203)	ENSMAUG00000012016	Rspo2 (ENSMAUG00000011388)	Eif3e (ENSMAUG00000009946)	Emc2 (ENSMAUG00000011841)	Tmem74 (ENSMAUG00000009193)	Trhr (ENSMAUG00000009912) ##23	Nudcd1 (ENSMAUG00000005692)	Eny2 (ENSMAUG00000007674)	Pkhd1l1 (ENSMAUG00000000463)	ENSMAUG00000000245	Sybu (ENSMAUG00000017804)	ENSMAUG00000000043	Kcnv1 (ENSMAUG00000008386)
Chinese hamster chok1gshd	MODERN SPECIES	207	ENSCGRG00001002761	Ubr5 (ENSCGRG00001002960)	Odf1 (ENSCGRG00001015547)	Klf10 (ENSCGRG00001015251)	Azin1 (ENSCGRG00001002023)	Atp6v1c1 (ENSCGRG00001020587)	Baalc (ENSCGRG00001015487)	Fzd6 (ENSCGRG00001013670)	Cthrc1 (ENSCGRG00001011914)	MFT (ENSCGRG00001006441)	Dcaf13 (ENSCGRG00001023256)	Rims2 (ENSCGRG00001017362)	Dcstamp (ENSCGRG00001013205)	Dpys (ENSCGRG00001011014)	Lrp12 (ENSCGRG00001010635)	Zfpm2 (ENSCGRG00001009999) ##22	Oxr1 (ENSCGRG00001015301)	Abra (ENSCGRG00001012776)	Angpt1 (ENSCGRG00001011795)	Rspo2 (ENSCGRG00001010715)	Eif3e (ENSCGRG00001006785)	ENSCGRG00001001380	Emc2 (ENSCGRG00001020905)	Tmem74 (ENSCGRG00001014169)	ENSCGRG00001020749	Trhr (ENSCGRG00001020416) ##23	ENSCGRG00001020308	ENSCGRG00001016509	Eny2 (ENSCGRG00001015308)	Pkhd1l1 (ENSCGRG00001014470)	Ebag9 (ENSCGRG00001009564)
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Prairie vole	MODERN SPECIES	102			Atp6v1c1 (ENSMOCG00000003343)	Baalc (ENSMOCG00000016406)	Fzd6 (ENSMOCG00000018634)	Cthrc1 (ENSMOCG00000003229)	ENSMOCG00000001296	Slc25a32 (ENSMOCG00000014663)	Dcaf13 (ENSMOCG00000011609)	ENSMOCG00000017431	Rims2 (ENSMOCG00000001988)	Dcstamp (ENSMOCG00000005844)	Dpys (ENSMOCG00000003058)	Lrp12 (ENSMOCG00000018668)	ENSMOCG00000019475	Zfpm2 (ENSMOCG00000013738) ##22	ENSMOCG00000018803	Abra (ENSMOCG00000011808)	Angpt1 (ENSMOCG00000015180)	Rspo2 (ENSMOCG00000017286)	Eif3e (ENSMOCG00000014831)	Emc2 (ENSMOCG00000004849)	Tmem74 (ENSMOCG00000003138)	Trhr (ENSMOCG00000020887) ##23	Nudcd1 (ENSMOCG00000001394)	Eny2 (ENSMOCG00000012387)	Pkhd1l1 (ENSMOCG00000020807)	Ebag9 (ENSMOCG00000008680)	Sybu (ENSMOCG00000008712)	ENSMOCG00000008423	Kcnv1 (ENSMOCG00000017652)
Northern American deer mouse	MODERN SPECIES	12	Ubr5 (ENSPEMG00000020823)	Odf1 (ENSPEMG00000023346)	ENSPEMG00000025191	Klf10 (ENSPEMG00000007722)	Azin1 (ENSPEMG00000021239)	Atp6v1c1 (ENSPEMG00000020452)	Fzd6 (ENSPEMG00000021530)	Cthrc1 (ENSPEMG00000016828)	Slc25a32 (ENSPEMG00000000366)	Dcaf13 (ENSPEMG00000011958)	Rims2 (ENSPEMG00000019463)	Dcstamp (ENSPEMG00000007166)	Dpys (ENSPEMG00000019656)	Lrp12 (ENSPEMG00000008441)	ENSPEMG00000026853	Zfpm2 (ENSPEMG00000008866) ##22	ENSPEMG00000025732	Oxr1 (ENSPEMG00000028644)	Abra (ENSPEMG00000020836)	Angpt1 (ENSPEMG00000013024)	Rspo2 (ENSPEMG00000024367)	Eif3e (ENSPEMG00000008528)	Emc2 (ENSPEMG00000020515)	ENSPEMG00000029407	ENSPEMG00000030818	Tmem74 (ENSPEMG00000028243)	Trhr (ENSPEMG00000020401) ##23	Nudcd1 (ENSPEMG00000005927)	Eny2 (ENSPEMG00000022758)	ENSPEMG00000025458	Pkhd1l1 (ENSPEMG00000021231)
Murinae	ANCESTRAL SPECIES	10	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.e	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Mus	ANCESTRAL SPECIES	11	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00900000143642	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.e	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Mus_A	ANCESTRAL SPECIES	13	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00900000143428	ENSGT00900000143642	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.e	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00900000143428	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.e	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Mouse	MODERN SPECIES	6	Ubr5 (ENSMUSG00000037487)	Odf1 (ENSMUSG00000061923)	Klf10 (ENSMUSG00000037465)	Azin1 (ENSMUSG00000037458)	Atp6v1c1 (ENSMUSG00000022295)	Baalc (ENSMUSG00000022296)	Fzd6 (ENSMUSG00000022297)	Cthrc1 (ENSMUSG00000054196)	Slc25a32 (ENSMUSG00000022299)	Dcaf13 (ENSMUSG00000022300)	Rims2 (ENSMUSG00000037386)	Dcstamp (ENSMUSG00000022303)	Dpys (ENSMUSG00000022304)	Lrp12 (ENSMUSG00000022305)	9330182O14Rik (ENSMUSG00000094112)	Zfpm2 (ENSMUSG00000022306) ##22	Oxr1 (ENSMUSG00000022307)	Abra (ENSMUSG00000042895)	Angpt1 (ENSMUSG00000022309)	Rspo2 (ENSMUSG00000051920)	Eif3e (ENSMUSG00000022336)	Emc2 (ENSMUSG00000022337)	Tmem74 (ENSMUSG00000054409)	Trhr (ENSMUSG00000038760) ##23	Nudcd1 (ENSMUSG00000038736)	Eny2 (ENSMUSG00000022338)	Pkhd1l1 (ENSMUSG00000038725)	ENSMUSG00000121576	Ebag9 (ENSMUSG00000022339)	Sybu (ENSMUSG00000022340)	Kcnv1 (ENSMUSG00000022342)
Mus_C	ANCESTRAL SPECIES	28	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00900000143428	ENSGT00900000143642	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.e	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
spretus	MODERN SPECIES	6	Ubr5 (MGP_SPRETEiJ_G0020645)	Odf1 (MGP_SPRETEiJ_G0020646)	Klf10 (MGP_SPRETEiJ_G0020647)	Azin1 (MGP_SPRETEiJ_G0020648)	Atp6v1c1 (MGP_SPRETEiJ_G0020649)	MGP_SPRETEiJ_G0020650	Fzd6 (MGP_SPRETEiJ_G0020651)	Cthrc1 (MGP_SPRETEiJ_G0020652)	Slc25a32 (MGP_SPRETEiJ_G0020653)	Dcaf13 (MGP_SPRETEiJ_G0020654)	Rims2 (MGP_SPRETEiJ_G0020655)	Dcstamp (MGP_SPRETEiJ_G0020656)	Dpys (MGP_SPRETEiJ_G0020657)	Lrp12 (MGP_SPRETEiJ_G0020658)	MGP_SPRETEiJ_G0020659	Zfpm2 (MGP_SPRETEiJ_G0020660) ##22	Oxr1 (MGP_SPRETEiJ_G0020661)	Abra (MGP_SPRETEiJ_G0020662)	Angpt1 (MGP_SPRETEiJ_G0020663)	Rspo2 (MGP_SPRETEiJ_G0020664)	Eif3e (MGP_SPRETEiJ_G0020665)	Emc2 (MGP_SPRETEiJ_G0020666)	Tmem74 (MGP_SPRETEiJ_G0020667)	Trhr (MGP_SPRETEiJ_G0020668) ##23	Nudcd1 (MGP_SPRETEiJ_G0020669)	Eny2 (MGP_SPRETEiJ_G0020670)	Pkhd1l1 (MGP_SPRETEiJ_G0020671)	Ebag9 (MGP_SPRETEiJ_G0020672)	Sybu (MGP_SPRETEiJ_G0020673)	Kcnv1 (MGP_SPRETEiJ_G0020674)	Csmd3 (MGP_SPRETEiJ_G0020675)
Steppe mouse	MODERN SPECIES	2964																Zfpm2 (ENSMSIG00000031054) ##22	ENSMSIG00000031052	Oxr1 (ENSMSIG00000031034)	Abra (ENSMSIG00000031032)
Ryukyu mouse	MODERN SPECIES	6	Ubr5 (MGP_CAROLIEiJ_G0019748)	Odf1 (MGP_CAROLIEiJ_G0019749)	Klf10 (MGP_CAROLIEiJ_G0019750)	Azin1 (MGP_CAROLIEiJ_G0019751)	Atp6v1c1 (MGP_CAROLIEiJ_G0019752)	MGP_CAROLIEiJ_G0019753	Fzd6 (MGP_CAROLIEiJ_G0019754)	Cthrc1 (MGP_CAROLIEiJ_G0019755)	Slc25a32 (MGP_CAROLIEiJ_G0019756)	Dcaf13 (MGP_CAROLIEiJ_G0019757)	Rims2 (MGP_CAROLIEiJ_G0019758)	Dcstamp (MGP_CAROLIEiJ_G0019759)	Dpys (MGP_CAROLIEiJ_G0019760)	Lrp12 (MGP_CAROLIEiJ_G0019761)	MGP_CAROLIEiJ_G0019762	Zfpm2 (MGP_CAROLIEiJ_G0019763) ##22	Oxr1 (MGP_CAROLIEiJ_G0019764)	Abra (MGP_CAROLIEiJ_G0019765)	Angpt1 (MGP_CAROLIEiJ_G0019766)	Rspo2 (MGP_CAROLIEiJ_G0019767)	Eif3e (MGP_CAROLIEiJ_G0019768)	Emc2 (MGP_CAROLIEiJ_G0019769)	Tmem74 (MGP_CAROLIEiJ_G0019770)	Trhr (MGP_CAROLIEiJ_G0019771) ##23	Nudcd1 (MGP_CAROLIEiJ_G0019772)	Eny2 (MGP_CAROLIEiJ_G0019773)	Pkhd1l1 (MGP_CAROLIEiJ_G0019774)	Ebag9 (MGP_CAROLIEiJ_G0019775)	Sybu (MGP_CAROLIEiJ_G0019776)	Kcnv1 (MGP_CAROLIEiJ_G0019777)	Csmd3 (MGP_CAROLIEiJ_G0019778)
Shrew mouse	MODERN SPECIES	8	Ubr5 (MGP_PahariEiJ_G0019757)	Odf1 (MGP_PahariEiJ_G0019758)	Klf10 (MGP_PahariEiJ_G0019759)	Azin1 (MGP_PahariEiJ_G0019760)	Atp6v1c1 (MGP_PahariEiJ_G0019761)	MGP_PahariEiJ_G0019762	Fzd6 (MGP_PahariEiJ_G0019763)	Cthrc1 (MGP_PahariEiJ_G0019764)	Slc25a32 (MGP_PahariEiJ_G0019765)	Dcaf13 (MGP_PahariEiJ_G0019766)	Rims2 (MGP_PahariEiJ_G0019767)	Dcstamp (MGP_PahariEiJ_G0019768)	Dpys (MGP_PahariEiJ_G0019769)	Lrp12 (MGP_PahariEiJ_G0019770)	MGP_PahariEiJ_G0019771	Zfpm2 (MGP_PahariEiJ_G0019772) ##22	Oxr1 (MGP_PahariEiJ_G0019773)	Abra (MGP_PahariEiJ_G0019774)	Angpt1 (MGP_PahariEiJ_G0019775)	Rspo2 (MGP_PahariEiJ_G0019776)	Eif3e (MGP_PahariEiJ_G0019777)	Emc2 (MGP_PahariEiJ_G0019778)	Tmem74 (MGP_PahariEiJ_G0019779)	Trhr (MGP_PahariEiJ_G0019780) ##23	Nudcd1 (MGP_PahariEiJ_G0019781)	Eny2 (MGP_PahariEiJ_G0019782)	Pkhd1l1 (MGP_PahariEiJ_G0019783)	Ebag9 (MGP_PahariEiJ_G0019784)	Sybu (MGP_PahariEiJ_G0019785)	Kcnv1 (MGP_PahariEiJ_G0019786)	Csmd3 (MGP_PahariEiJ_G0019787)
Rat	MODERN SPECIES	17	Odf1 (ENSRNOG00000006578)	Klf10 (ENSRNOG00000006118)	Azin1 (ENSRNOG00000005333)	Atp6v1c1 (ENSRNOG00000004846)	Baalc (ENSRNOG00000004697)	Fzd6 (ENSRNOG00000004660)	Cthrc1 (ENSRNOG00000004578)	Slc25a32 (ENSRNOG00000004403)	Dcaf13 (ENSRNOG00000004301)	Rims2 (ENSRNOG00000004201)	Dcstamp (ENSRNOG00000004704)	Dpys (ENSRNOG00000004298)	Lrp12 (ENSRNOG00000004152)	LOC682793 (ENSRNOG00000029377)	ENSRNOG00000067069	Zfpm2 (ENSRNOG00000004109) ##22	Oxr1 (ENSRNOG00000056487)	Rpl31-ps4 (ENSRNOG00000057824)	Abra (ENSRNOG00000007999)	LOC103692897 (ENSRNOG00000070941)	ENSRNOG00000068130	Angpt1 (ENSRNOG00000005854)	Rspo2 (ENSRNOG00000037687)	Eif3e (ENSRNOG00000027690)	Emc2 (ENSRNOG00000005123)	Tmem74 (ENSRNOG00000065300)	Trhr (ENSRNOG00000005048) ##23	Nudcd1 (ENSRNOG00000024929)	Eny2 (ENSRNOG00000004681)	Pkhd1l1 (ENSRNOG00000004398)	Ebag9 (ENSRNOG00000004220)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1581					Azin1 (ENSNGAG00000021284)	Atp6v1c1 (ENSNGAG00000018647)	Baalc (ENSNGAG00000022410)	Fzd6 (ENSNGAG00000021476)	Cthrc1 (ENSNGAG00000020040)	Slc25a32 (ENSNGAG00000012882)	Dcaf13 (ENSNGAG00000021670)	Rims2 (ENSNGAG00000023397)	Dcstamp (ENSNGAG00000012582)	Dpys (ENSNGAG00000019144)	Lrp12 (ENSNGAG00000021837)	Zfpm2 (ENSNGAG00000019414) ##22	ENSNGAG00000023726	ENSNGAG00000022569	Oxr1 (ENSNGAG00000020733)	Abra (ENSNGAG00000022930)	Angpt1 (ENSNGAG00000024340)	Rspo2 (ENSNGAG00000013247)	ENSNGAG00000000894	Emc2 (ENSNGAG00000023676)	Tmem74 (ENSNGAG00000023062)	Trhr (ENSNGAG00000016324) ##23	Nudcd1 (ENSNGAG00000001356)	Eny2 (ENSNGAG00000021189)	Pkhd1l1 (ENSNGAG00000020290)	Ebag9 (ENSNGAG00000021390)	Sybu (ENSNGAG00000015538)
Lesser Egyptian jerboa	MODERN SPECIES	247																Zfpm2 (ENSJJAG00000000192) ##22
Kangaroo rat	MODERN SPECIES	336	Rrm2b (ENSDORG00000007056)	Ubr5 (ENSDORG00000007058)	Odf1 (ENSDORG00000003568)	Klf10 (ENSDORG00000015269)	Azin1 (ENSDORG00000004402)	Atp6v1c1 (ENSDORG00000014327)	Baalc (ENSDORG00000026341)	Fzd6 (ENSDORG00000005541)	Cthrc1 (ENSDORG00000029687)	Slc25a32 (ENSDORG00000011870)	Dcaf13 (ENSDORG00000011873)	Rims2 (ENSDORG00000016566)	Dcstamp (ENSDORG00000013053)	Dpys (ENSDORG00000013055)	Lrp12 (ENSDORG00000013059)	Zfpm2 (ENSDORG00000002573) ##22	ENSDORG00000024357	ENSDORG00000000538	Abra (ENSDORG00000000539)	Angpt1 (ENSDORG00000013524)	Rspo2 (ENSDORG00000023450)	Eif3e (ENSDORG00000014106)	ENSDORG00000006175	Trhr (ENSDORG00000004995) ##23	Nudcd1 (ENSDORG00000008008)	ENSDORG00000006207	Pkhd1l1 (ENSDORG00000010170)	Ebag9 (ENSDORG00000010177)	Sybu (ENSDORG00000010181)	Kcnv1 (ENSDORG00000016146)	Csmd3 (ENSDORG00000012327)
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.b	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Marmotini	ANCESTRAL SPECIES	10	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.b	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.b	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Arctic ground squirrel	MODERN SPECIES	30												ENSUPAG00010014671	DCSTAMP (ENSUPAG00010014649)	DPYS (ENSUPAG00010014634)	LRP12 (ENSUPAG00010014620)	ZFPM2 (ENSUPAG00010014605) ##22	OXR1 (ENSUPAG00010014428)	ABRA (ENSUPAG00010014421)	ANGPT1 (ENSUPAG00010014401)	RSPO2 (ENSUPAG00010014385)	EIF3E (ENSUPAG00010014351)	EMC2 (ENSUPAG00010014324)	TMEM74 (ENSUPAG00010014313)	TRHR (ENSUPAG00010014305) ##23	NUDCD1 (ENSUPAG00010014294)	ENY2 (ENSUPAG00010014269)	PKHD1L1 (ENSUPAG00010014083)	EBAG9 (ENSUPAG00010014065)	SYBU (ENSUPAG00010014018)	ENSUPAG00010014010	KCNV1 (ENSUPAG00010014000)
Squirrel	MODERN SPECIES	70	UBR5 (ENSSTOG00000005328)	ODF1 (ENSSTOG00000029127)	KLF10 (ENSSTOG00000027022)	Azin1 (ENSSTOG00000008823)	ATP6V1C1 (ENSSTOG00000028201)	BAALC (ENSSTOG00000031061)	FZD6 (ENSSTOG00000007962)	CTHRC1 (ENSSTOG00000007977)	SLC25A32 (ENSSTOG00000007983)	DCAF13 (ENSSTOG00000008009)	ENSSTOG00000010449	RIMS2 (ENSSTOG00000012081)	DCSTAMP (ENSSTOG00000020933)	DPYS (ENSSTOG00000013065)	LRP12 (ENSSTOG00000013074)	ZFPM2 (ENSSTOG00000020729) ##22	OXR1 (ENSSTOG00000005468)	ABRA (ENSSTOG00000011664)	ANGPT1 (ENSSTOG00000008023)	RSPO2 (ENSSTOG00000021427)	EIF3E (ENSSTOG00000008976)	EMC2 (ENSSTOG00000007594)	TMEM74 (ENSSTOG00000001096)	TRHR (ENSSTOG00000015264) ##23	NUDCD1 (ENSSTOG00000015266)	ENY2 (ENSSTOG00000027768)	PKHD1L1 (ENSSTOG00000015273)	EBAG9 (ENSSTOG00000015326)	SYBU (ENSSTOG00000015331)	KCNV1 (ENSSTOG00000020827)	ENSSTOG00000031426
Alpin marmot	MODERN SPECIES	18	RRM2B (ENSMMMG00000016263)	UBR5 (ENSMMMG00000016293)	ODF1 (ENSMMMG00000016389)	KLF10 (ENSMMMG00000016396)	AZIN1 (ENSMMMG00000016403)	ATP6V1C1 (ENSMMMG00000016414)	FZD6 (ENSMMMG00000016434)	CTHRC1 (ENSMMMG00000016449)	SLC25A32 (ENSMMMG00000016463)	DCAF13 (ENSMMMG00000016469)	RIMS2 (ENSMMMG00000016495)	DCSTAMP (ENSMMMG00000016596)	DPYS (ENSMMMG00000016604)	LRP12 (ENSMMMG00000016608)	ENSMMMG00000016628	ZFPM2 (ENSMMMG00000016650) ##22	OXR1 (ENSMMMG00000016662)	ABRA (ENSMMMG00000016895)	ANGPT1 (ENSMMMG00000016901)	RSPO2 (ENSMMMG00000016913)	EIF3E (ENSMMMG00000016929)	EMC2 (ENSMMMG00000016935)	TMEM74 (ENSMMMG00000016943)	TRHR (ENSMMMG00000016948) ##23	ENSMMMG00000016954	ENY2 (ENSMMMG00000016968)	PKHD1L1 (ENSMMMG00000016997)	EBAG9 (ENSMMMG00000017111)	SYBU (ENSMMMG00000017129)	ENSMMMG00000017191	KCNV1 (ENSMMMG00000017196)
Eurasian red squirrel	MODERN SPECIES		KLF10 (ENSSVLG00005000329)	ENSSVLG00005000347	AZIN1 (ENSSVLG00005000364)	ATP6V1C1 (ENSSVLG00005000386)	BAALC (ENSSVLG00005000430)	FZD6 (ENSSVLG00005000456)	CTHRC1 (ENSSVLG00005000467)	ENSSVLG00005000487	DCAF13 (ENSSVLG00005000508)	ENSSVLG00005000543	ENSSVLG00005000567	RIMS2 (ENSSVLG00005000655)	ENSSVLG00005000780	DPYS (ENSSVLG00005000796)	LRP12 (ENSSVLG00005000829)	ZFPM2 (ENSSVLG00005000863) ##22	OXR1 (ENSSVLG00005000991)	ABRA (ENSSVLG00005001075)	ANGPT1 (ENSSVLG00005001092)	RSPO2 (ENSSVLG00005001118)	ENSSVLG00005001155	EMC2 (ENSSVLG00005001174)	TMEM74 (ENSSVLG00005001194)	TRHR (ENSSVLG00005001205) ##23	NUDCD1 (ENSSVLG00005001220)	ENY2 (ENSSVLG00005001233)	PKHD1L1 (ENSSVLG00005001320)	EBAG9 (ENSSVLG00005001423)	SYBU (ENSSVLG00005001459)	ENSSVLG00005001510	KCNV1 (ENSSVLG00005001530)
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b
Guinea pig	MODERN SPECIES		RRM2B (ENSCPOG00000011429)	UBR5 (ENSCPOG00000009637)	ODF1 (ENSCPOG00000012742)	KLF10 (ENSCPOG00000011105)	AZIN1 (ENSCPOG00000015536)	ATP6V1C1 (ENSCPOG00000009966)	BAALC (ENSCPOG00000039194)	FZD6 (ENSCPOG00000012281)	CTHRC1 (ENSCPOG00000012284)	SLC25A32 (ENSCPOG00000033503)	DCAF13 (ENSCPOG00000012291)	RIMS2 (ENSCPOG00000007288)	DCSTAMP (ENSCPOG00000022935)	DPYS (ENSCPOG00000005042)	LRP12 (ENSCPOG00000024738)	ZFPM2 (ENSCPOG00000014225) ##22	OXR1 (ENSCPOG00000023091)	ABRA (ENSCPOG00000026994)	ANGPT1 (ENSCPOG00000002490)	RSPO2 (ENSCPOG00000040689)	EIF3E (ENSCPOG00000006266)	EMC2 (ENSCPOG00000011570)	TMEM74 (ENSCPOG00000040808)	ENSCPOG00000036722	ENSCPOG00000040629	ENSCPOG00000031487
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922
Degu	MODERN SPECIES	189	KLF10 (ENSODEG00000001013)	Azin1 (ENSODEG00000000999)	ENSODEG00000000974	FZD6 (ENSODEG00000000950)	ENSODEG00000000941	SLC25A32 (ENSODEG00000000912)	DCAF13 (ENSODEG00000000870)	ENSODEG00000000845	ENSODEG00000018633	ENSODEG00000000823	RIMS2 (ENSODEG00000001405)	DCSTAMP (ENSODEG00000001297)	DPYS (ENSODEG00000001258)	LRP12 (ENSODEG00000001219)	ENSODEG00000001195	ZFPM2 (ENSODEG00000001176) ##22	ENSODEG00000001159	ENSODEG00000001148	ABRA (ENSODEG00000001137)	ANGPT1 (ENSODEG00000001121)	RSPO2 (ENSODEG00000001099)	EIF3E (ENSODEG00000001057)	ENSODEG00000001021	ENSODEG00000000993	ENSODEG00000000979
Long-tailed chinchilla	MODERN SPECIES	124	NCALD (ENSCLAG00000005101)	RRM2B (ENSCLAG00000005652)	UBR5 (ENSCLAG00000005604)	ODF1 (ENSCLAG00000009658)	KLF10 (ENSCLAG00000006194)	Azin1 (ENSCLAG00000006685)	ATP6V1C1 (ENSCLAG00000007454)	FZD6 (ENSCLAG00000004386)	ENSCLAG00000004942	SLC25A32 (ENSCLAG00000005938)	DCAF13 (ENSCLAG00000006565)	RIMS2 (ENSCLAG00000011574)	DCSTAMP (ENSCLAG00000010026)	DPYS (ENSCLAG00000010295)	LRP12 (ENSCLAG00000005081)	ZFPM2 (ENSCLAG00000005797) ##22	OXR1 (ENSCLAG00000006103)	ABRA (ENSCLAG00000006852)	ENSCLAG00000007287	ANGPT1 (ENSCLAG00000014625)	RSPO2 (ENSCLAG00000013840)	EIF3E (ENSCLAG00000014021)	EMC2 (ENSCLAG00000004492)
Naked mole-rat female	MODERN SPECIES	13	RRM2B (ENSHGLG00000008176)	ODF1 (ENSHGLG00000004499)	KLF10 (ENSHGLG00000004544)	Azin1 (ENSHGLG00000004640)	ATP6V1C1 (ENSHGLG00000004692)	ENSHGLG00000034928	ENSHGLG00000046383	FZD6 (ENSHGLG00000006472)	ENSHGLG00000007218	SLC25A32 (ENSHGLG00000033983)	DCAF13 (ENSHGLG00000008862)	RIMS2 (ENSHGLG00000005053)	DCSTAMP (ENSHGLG00000010711)	DPYS (ENSHGLG00000011917)	LRP12 (ENSHGLG00000017165)	ZFPM2 (ENSHGLG00000015400) ##22	OXR1 (ENSHGLG00000015416)	ABRA (ENSHGLG00000015448)	ENSHGLG00000015387	ANGPT1 (ENSHGLG00000013880)	RSPO2 (ENSHGLG00000008406)	ENSHGLG00000008859	EMC2 (ENSHGLG00000010553)	ENSHGLG00000008336
Primates	ANCESTRAL SPECIES	20	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Haplorrhini	ANCESTRAL SPECIES	19	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Simiiformes	ANCESTRAL SPECIES	20	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00910000147332	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000000984.t.a.b	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Hominidae	ANCESTRAL SPECIES	15	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00910000147332	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000158886.`b.b.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000000984.t.a.b	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00910000147332	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000158886.`b.b.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000000984.t.a.b	ENSGT00390000002661.b.lb	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00910000147332	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000158886.`b.b.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000000984.t.a.b	ENSGT00390000002661.b.lb	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Pan	ANCESTRAL SPECIES	11	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00910000147332	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000158886.`b.b.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000000984.t.a.b	ENSGT00390000002661.b.lb	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Chimpanzee	MODERN SPECIES	21	AZIN1 (ENSPTRG00000020485)	ATP6V1C1 (ENSPTRG00000020486)	BAALC (ENSPTRG00000020488)	FZD6 (ENSPTRG00000020490)	CTHRC1 (ENSPTRG00000020491)	SLC25A32 (ENSPTRG00000020492)	DCAF13 (ENSPTRG00000020493)	RIMS2 (ENSPTRG00000020494)	ENSPTRG00000050452	ENSPTRG00000052526	ENSPTRG00000016219	DCSTAMP (ENSPTRG00000020495)	DPYS (ENSPTRG00000020496)	ENSPTRG00000050580	LRP12 (ENSPTRG00000020497)	ZFPM2 (ENSPTRG00000020498) ##22	OXR1 (ENSPTRG00000020501)	ENSPTRG00000044459	ABRA (ENSPTRG00000020502)	ANGPT1 (ENSPTRG00000020503)	RSPO2 (ENSPTRG00000020504)	ENSPTRG00000048191	EIF3E (ENSPTRG00000020505)	EMC2 (ENSPTRG00000020506)	TMEM74 (ENSPTRG00000020507)	TRHR (ENSPTRG00000020508) ##23	NUDCD1 (ENSPTRG00000020509)	ENY2 (ENSPTRG00000020510)	PKHD1L1 (ENSPTRG00000030951)	EBAG9 (ENSPTRG00000020513)	SYBU (ENSPTRG00000020514)
Bonobo	MODERN SPECIES	21	AZIN1 (ENSPPAG00000028149)	ATP6V1C1 (ENSPPAG00000030212)	BAALC (ENSPPAG00000030347)	FZD6 (ENSPPAG00000035393)	CTHRC1 (ENSPPAG00000028626)	SLC25A32 (ENSPPAG00000040806)	ENSPPAG00000029408	ENSPPAG00000039143	ENSPPAG00000027372	ENSPPAG00000040426	ENSPPAG00000035550	DCSTAMP (ENSPPAG00000043283)	DPYS (ENSPPAG00000043679)	ENSPPAG00000017785	LRP12 (ENSPPAG00000039973)	ZFPM2 (ENSPPAG00000014102) ##22	ENSPPAG00000033652	ENSPPAG00000027885	OXR1 (ENSPPAG00000020712)	ENSPPAG00000032221	ABRA (ENSPPAG00000030770)	ANGPT1 (ENSPPAG00000036353)	RSPO2 (ENSPPAG00000029316)	ENSPPAG00000034564	ENSPPAG00000021691	EMC2 (ENSPPAG00000041266)	TRHR (ENSPPAG00000039177) ##23	NUDCD1 (ENSPPAG00000042778)	ENY2 (ENSPPAG00000044052)	PKHD1L1 (ENSPPAG00000041799)	EBAG9 (ENSPPAG00000033701)
Human	MODERN SPECIES	20	ODF1 (ENSG00000155087)	KLF10 (ENSG00000155090)	AZIN1 (ENSG00000155096)	ENSG00000289653	ATP6V1C1 (ENSG00000155097)	BAALC (ENSG00000164929)	FZD6 (ENSG00000164930)	CTHRC1 (ENSG00000164932)	SLC25A32 (ENSG00000164933)	ENSG00000285982	DCAF13 (ENSG00000164934)	RIMS2 (ENSG00000176406)	DPYS (ENSG00000147647)	DCSTAMP (ENSG00000164935)	LRP12 (ENSG00000147650)	ZFPM2 (ENSG00000169946) ##22	OXR1 (ENSG00000164830)	ABRA (ENSG00000174429)	ANGPT1 (ENSG00000154188)	RSPO2 (ENSG00000147655)	EIF3E (ENSG00000104408)	EMC2 (ENSG00000104412)	TMEM74 (ENSG00000164841)	TRHR (ENSG00000174417) ##23	NUDCD1 (ENSG00000120526)	ENY2 (ENSG00000120533)	PKHD1L1 (ENSG00000205038)	EBAG9 (ENSG00000147654)	ENSG00000289767	SYBU (ENSG00000147642)	KCNV1 (ENSG00000164794)
Gorilla	MODERN SPECIES	21	KLF10 (ENSGGOG00000015206)	AZIN1 (ENSGGOG00000011173)	ATP6V1C1 (ENSGGOG00000004146)	ENSGGOG00000039387	ENSGGOG00000000468	FZD6 (ENSGGOG00000015768)	CTHRC1 (ENSGGOG00000001962)	SLC25A32 (ENSGGOG00000015117)	ENSGGOG00000015124	ENSGGOG00000006922	ENSGGOG00000038784	ENSGGOG00000024841	DCSTAMP (ENSGGOG00000001979)	DPYS (ENSGGOG00000000248)	LRP12 (ENSGGOG00000011923)	ZFPM2 (ENSGGOG00000011645) ##22	OXR1 (ENSGGOG00000006236)	ENSGGOG00000042652	ENSGGOG00000001485	ABRA (ENSGGOG00000016286)	ANGPT1 (ENSGGOG00000023090)	RSPO2 (ENSGGOG00000005382)	ENSGGOG00000038937	EIF3E (ENSGGOG00000022955)	EMC2 (ENSGGOG00000023750)	TMEM74 (ENSGGOG00000008550)	TRHR (ENSGGOG00000016661) ##23	NUDCD1 (ENSGGOG00000016533)	ENY2 (ENSGGOG00000016540)	PKHD1L1 (ENSGGOG00000014869)	EBAG9 (ENSGGOG00000016420)
Orangutan	MODERN SPECIES	21	RRM2B (ENSPPYG00000018796)	UBR5 (ENSPPYG00000018797)	ODF1 (ENSPPYG00000018799)	KLF10 (ENSPPYG00000018800)	AZIN1 (ENSPPYG00000034304)	ATP6V1C1 (ENSPPYG00000018803)	ENSPPYG00000029959	FZD6 (ENSPPYG00000018806)	CTHRC1 (ENSPPYG00000018807)	SLC25A32 (ENSPPYG00000018808)	DCAF13 (ENSPPYG00000018809)	RIMS2 (ENSPPYG00000018810)	DCSTAMP (ENSPPYG00000018811)	DPYS (ENSPPYG00000018812)	LRP12 (ENSPPYG00000018813)	ZFPM2 (ENSPPYG00000041397) ##22	OXR1 (ENSPPYG00000018815)	ENSPPYG00000041248	ABRA (ENSPPYG00000034168)	ANGPT1 (ENSPPYG00000018817)	RSPO2 (ENSPPYG00000039784)	EIF3E (ENSPPYG00000018819)	EMC2 (ENSPPYG00000018820)	TMEM74 (ENSPPYG00000018821)	TRHR (ENSPPYG00000018822) ##23	NUDCD1 (ENSPPYG00000018823)	ENY2 (ENSPPYG00000034924)	PKHD1L1 (ENSPPYG00000035417)	EBAG9 (ENSPPYG00000018824)	SYBU (ENSPPYG00000018825)	KCNV1 (ENSPPYG00000018827)
Gibbon	MODERN SPECIES	6	ODF1 (ENSNLEG00000003644)	KLF10 (ENSNLEG00000003646)	AZIN1 (ENSNLEG00000003653)	ATP6V1C1 (ENSNLEG00000003690)	ENSNLEG00000003730	FZD6 (ENSNLEG00000003744)	CTHRC1 (ENSNLEG00000003773)	SLC25A32 (ENSNLEG00000003777)	ENSNLEG00000003791	ENSNLEG00000003836	ENSNLEG00000034691	DCSTAMP (ENSNLEG00000003883)	DPYS (ENSNLEG00000003897)	ENSNLEG00000034150	LRP12 (ENSNLEG00000003921)	ZFPM2 (ENSNLEG00000003937) ##22	ENSNLEG00000030756	OXR1 (ENSNLEG00000003957)	ENSNLEG00000004052	ABRA (ENSNLEG00000004053)	ANGPT1 (ENSNLEG00000035980)	RSPO2 (ENSNLEG00000004105)	ENSNLEG00000032454	EIF3E (ENSNLEG00000004120)	EMC2 (ENSNLEG00000004190)	TRHR (ENSNLEG00000004227) ##23	NUDCD1 (ENSNLEG00000004231)	ENSNLEG00000004284	PKHD1L1 (ENSNLEG00000029337)	EBAG9 (ENSNLEG00000030785)	SYBU (ENSNLEG00000004459)
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT01000000216464	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT01000000216464	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Vervet Monkey	MODERN SPECIES	27	UBR5 (ENSCSAG00000011959)	ODF1 (ENSCSAG00000011938)	KLF10 (ENSCSAG00000011934)	AZIN1 (ENSCSAG00000011928)	ENSCSAG00000018605	ATP6V1C1 (ENSCSAG00000011918)	BAALC (ENSCSAG00000011912)	FZD6 (ENSCSAG00000011906)	CTHRC1 (ENSCSAG00000011899)	SLC25A32 (ENSCSAG00000011893)	DCAF13 (ENSCSAG00000011887)	RIMS2 (ENSCSAG00000011873)	DCSTAMP (ENSCSAG00000011849)	DPYS (ENSCSAG00000011841)	LRP12 (ENSCSAG00000011833)	ZFPM2 (ENSCSAG00000011798) ##22	OXR1 (ENSCSAG00000011794)	ABRA (ENSCSAG00000011785)	ENSCSAG00000018606	ANGPT1 (ENSCSAG00000011748)	RSPO2 (ENSCSAG00000011712)	EIF3E (ENSCSAG00000011703)	EMC2 (ENSCSAG00000011696)	TMEM74 (ENSCSAG00000018608)	TRHR (ENSCSAG00000011682) ##23	NUDCD1 (ENSCSAG00000011655)	ENY2 (ENSCSAG00000011647)	PKHD1L1 (ENSCSAG00000011552)	EBAG9 (ENSCSAG00000011304)	SYBU (ENSCSAG00000011296)	ENSCSAG00000011264
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00910000148873	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l.a	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT01000000216464	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT01050000247280	ENSGT00390000013853	ENSGT00910000148873	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l.a	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT01000000216464	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155131.i.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Olive baboon	MODERN SPECIES	18	AZIN1 (ENSPANG00000002432)	ATP6V1C1 (ENSPANG00000019212)	BAALC (ENSPANG00000004696)	FZD6 (ENSPANG00000025725)	SLC25A32 (ENSPANG00000005632)	CTHRC1 (ENSPANG00000009895)	ENSPANG00000010643	RIMS2 (ENSPANG00000025440)	ENSPANG00000049925	ENSPANG00000043571	DCSTAMP (ENSPANG00000010316)	DPYS (ENSPANG00000001020)	LRP12 (ENSPANG00000021263)	ENSPANG00000050811	ENSPANG00000046936	ZFPM2 (ENSPANG00000017626) ##22	ENSPANG00000044818	ENSPANG00000044033	ENSPANG00000033888	OXR1 (ENSPANG00000017804)	ENSPANG00000037205	ABRA (ENSPANG00000019893)	ENSPANG00000047417	ANGPT1 (ENSPANG00000016683)	ENSPANG00000046034	RSPO2 (ENSPANG00000011560)	ENSPANG00000051014	EIF3E (ENSPANG00000008045)	EMC2 (ENSPANG00000017054)	ENSPANG00000050656	ENSPANG00000050236
Cercopithecinae_d	ANCESTRAL SPECIES	78																ENSGT00530000063823.b.b ##22	ENSGT00940000155131.i.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Sooty mangabey	MODERN SPECIES	633																ZFPM2 (ENSCATG00000031488) ##22	OXR1 (ENSCATG00000043680)	ABRA (ENSCATG00000029913)	ANGPT1 (ENSCATG00000031768)	RSPO2 (ENSCATG00000030726)	EIF3E (ENSCATG00000031561)	EMC2 (ENSCATG00000043965)	TMEM74 (ENSCATG00000020573)	ENSCATG00000004893	TRHR (ENSCATG00000036693) ##23	NUDCD1 (ENSCATG00000014721)	ENSCATG00000009204	PKHD1L1 (ENSCATG00000018087)	EBAG9 (ENSCATG00000003294)	SYBU (ENSCATG00000037874)	KCNV1 (ENSCATG00000032152)
Drill	MODERN SPECIES	1128																ZFPM2 (ENSMLEG00000038244) ##22	ENSMLEG00000036276	OXR1 (ENSMLEG00000015852)	ABRA (ENSMLEG00000032757)	ANGPT1 (ENSMLEG00000035581)	RSPO2 (ENSMLEG00000030169)
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00910000148873	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l.a.a	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155131.i.a.b	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Pig-tailed macaque	MODERN SPECIES	535	UBR5 (ENSMNEG00000028834)	ODF1 (ENSMNEG00000040981)	KLF10 (ENSMNEG00000032838)	AZIN1 (ENSMNEG00000019639)	ATP6V1C1 (ENSMNEG00000043769)	ENSMNEG00000045049	ENSMNEG00000001326	FZD6 (ENSMNEG00000042736)	CTHRC1 (ENSMNEG00000038540)	SLC25A32 (ENSMNEG00000039981)	ENSMNEG00000033963	RIMS2 (ENSMNEG00000030361)	DCSTAMP (ENSMNEG00000041659)	DPYS (ENSMNEG00000033042)	LRP12 (ENSMNEG00000039254)	ZFPM2 (ENSMNEG00000034635) ##22	ENSMNEG00000033250	OXR1 (ENSMNEG00000011515)	ABRA (ENSMNEG00000032508)	ANGPT1 (ENSMNEG00000041312)	ENSMNEG00000030765	RSPO2 (ENSMNEG00000039405)	EIF3E (ENSMNEG00000045529)	EMC2 (ENSMNEG00000040360)	TMEM74 (ENSMNEG00000005079)	ENSMNEG00000042220	TRHR (ENSMNEG00000045348) ##23	NUDCD1 (ENSMNEG00000032729)	ENY2 (ENSMNEG00000035666)	PKHD1L1 (ENSMNEG00000038873)	EBAG9 (ENSMNEG00000031030)
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l.a.a	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155131.i.a.b	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q.e.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Crab-eating macaque	MODERN SPECIES	18	ENSMFAG00000055961	ODF1 (ENSMFAG00000033541)	KLF10 (ENSMFAG00000036189)	AZIN1 (ENSMFAG00000040038)	ATP6V1C1 (ENSMFAG00000045088)	ENSMFAG00000060928	BAALC (ENSMFAG00000033705)	FZD6 (ENSMFAG00000001388)	CTHRC1 (ENSMFAG00000044699)	SLC25A32 (ENSMFAG00000039281)	ENSMFAG00000008982	RIMS2 (ENSMFAG00000031123)	DCSTAMP (ENSMFAG00000041648)	DPYS (ENSMFAG00000037174)	LRP12 (ENSMFAG00000004646)	ZFPM2 (ENSMFAG00000045726) ##22	ENSMFAG00000014271	OXR1 (ENSMFAG00000003232)	ABRA (ENSMFAG00000057764)	ENSMFAG00000047743	ENSMFAG00000059053	ANGPT1 (ENSMFAG00000041761)	ENSMFAG00000044812	RSPO2 (ENSMFAG00000031789)	EIF3E (ENSMFAG00000035456)	EMC2 (ENSMFAG00000045969)	ENSMFAG00000057800	ENSMFAG00000059409	TMEM74 (ENSMFAG00000030150)	TRHR (ENSMFAG00000031071) ##23	NUDCD1 (ENSMFAG00000043118)
Rhesus	MODERN SPECIES	18	ENSMMUG00000060305	ODF1 (ENSMMUG00000002108)	KLF10 (ENSMMUG00000018815)	AZIN1 (ENSMMUG00000001338)	ENSMMUG00000050988	ATP6V1C1 (ENSMMUG00000040361)	BAALC (ENSMMUG00000019398)	FZD6 (ENSMMUG00000019399)	CTHRC1 (ENSMMUG00000019402)	SLC25A32 (ENSMMUG00000019404)	ENSMMUG00000019405	RIMS2 (ENSMMUG00000019407)	DCSTAMP (ENSMMUG00000010760)	DPYS (ENSMMUG00000010761)	LRP12 (ENSMMUG00000022789)	ZFPM2 (ENSMMUG00000007721) ##22	ENSMMUG00000028941	OXR1 (ENSMMUG00000017845)	ABRA (ENSMMUG00000017850)	ANGPT1 (ENSMMUG00000017745)	ENSMMUG00000010744	RSPO2 (ENSMMUG00000054660)	EIF3E (ENSMMUG00000011359)	ENSMMUG00000056214	EMC2 (ENSMMUG00000019260)	TMEM74 (ENSMMUG00000016221)	TRHR (ENSMMUG00000008734) ##23	NUDCD1 (ENSMMUG00000006103)	ENY2 (ENSMMUG00000056202)	PKHD1L1 (ENSMMUG00000000975)	EBAG9 (ENSMMUG00000016186)
Rhinopithecus	ANCESTRAL SPECIES	71	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.l	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT01000000216464	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153431.b.g.b	ENSGT00940000159194
Golden snub-nosed monkey	MODERN SPECIES	1958																ZFPM2 (ENSRROG00000032254) ##22
Black snub-nosed monkey	MODERN SPECIES	774					FZD6 (ENSRBIG00000044509)	CTHRC1 (ENSRBIG00000038046)	SLC25A32 (ENSRBIG00000038433)	DCAF13 (ENSRBIG00000032300)	RIMS2 (ENSRBIG00000044475)	ENSRBIG00000035062	DCSTAMP (ENSRBIG00000035143)	DPYS (ENSRBIG00000036756)	ENSRBIG00000037614	ENSRBIG00000032295	LRP12 (ENSRBIG00000039602)	ZFPM2 (ENSRBIG00000031856) ##22	ENSRBIG00000029841	ENSRBIG00000027756	OXR1 (ENSRBIG00000040018)	ABRA (ENSRBIG00000003795)	ANGPT1 (ENSRBIG00000042356)	ENSRBIG00000039425	RSPO2 (ENSRBIG00000036128)
Platyrrhini	ANCESTRAL SPECIES	17	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.i	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194.b	ENSGT00390000002661.b	ENSGT00390000011922.p	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00910000148276	ENSGT00940000159740
Cebidae	ANCESTRAL SPECIES	19	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.i	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194.b	ENSGT00390000002661.b	ENSGT00390000011922.o	ENSGT00390000011922.p	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00910000148276
Marmoset	MODERN SPECIES	7	KLF10 (ENSCJAG00000016069)	AZIN1 (ENSCJAG00000016087)	ENSCJAG00000075143	ATP6V1C1 (ENSCJAG00000016100)	ENSCJAG00000081072	BAALC (ENSCJAG00000043716)	ENSCJAG00000041230	FZD6 (ENSCJAG00000016150)	CTHRC1 (ENSCJAG00000016167)	ENSCJAG00000043411	DCAF13 (ENSCJAG00000016181)	RIMS2 (ENSCJAG00000016212)	DCSTAMP (ENSCJAG00000006716)	DPYS (ENSCJAG00000006703)	LRP12 (ENSCJAG00000038802)	ZFPM2 (ENSCJAG00000006642) ##22	ENSCJAG00000006636	OXR1 (ENSCJAG00000006571)	ABRA (ENSCJAG00000040325)	ENSCJAG00000023213	ENSCJAG00000073345	ANGPT1 (ENSCJAG00000006522)	RSPO2 (ENSCJAG00000006515)	ENSCJAG00000072384	EIF3E (ENSCJAG00000006458)	EMC2 (ENSCJAG00000006437)	ENSCJAG00000079594	TMEM74 (ENSCJAG00000023212)	TRHR (ENSCJAG00000006433) ##23	NUDCD1 (ENSCJAG00000006407)	ENSCJAG00000006389
Cebidae_a	ANCESTRAL SPECIES	105	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711.i	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194.b	ENSGT00390000002661.b	ENSGT00390000011922.p	ENSGT00390000011922.o	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00910000148276	ENSGT00940000159740
Capuchin	MODERN SPECIES	56	KLF10 (ENSCCAG00000033474)	AZIN1 (ENSCCAG00000032476)	ATP6V1C1 (ENSCCAG00000027772)	BAALC (ENSCCAG00000028012)	FZD6 (ENSCCAG00000037830)	CTHRC1 (ENSCCAG00000026640)	ENSCCAG00000026753	SLC25A32 (ENSCCAG00000021065)	DCAF13 (ENSCCAG00000033103)	RIMS2 (ENSCCAG00000037616)	ENSCCAG00000016651	ENSCCAG00000034487	DCSTAMP (ENSCCAG00000021560)	DPYS (ENSCCAG00000031986)	LRP12 (ENSCCAG00000022730)	ZFPM2 (ENSCCAG00000031529) ##22	OXR1 (ENSCCAG00000028865)	ABRA (ENSCCAG00000024449)	ANGPT1 (ENSCCAG00000022543)	RSPO2 (ENSCCAG00000018637)	EIF3E (ENSCCAG00000026961)	ENSCCAG00000024886	TRHR (ENSCCAG00000031514) ##23	ENSCCAG00000027393	ENSCCAG00000038113	C3orf80 (ENSCCAG00000019682)	ENSCCAG00000037877
Bolivian squirrel monkey	MODERN SPECIES	144						FZD6 (ENSSBOG00000028934)	CTHRC1 (ENSSBOG00000019766)	SLC25A32 (ENSSBOG00000027220)	DCAF13 (ENSSBOG00000025597)	ENSSBOG00000034049	RIMS2 (ENSSBOG00000030048)	DCSTAMP (ENSSBOG00000030948)	ENSSBOG00000026499	DPYS (ENSSBOG00000023359)	LRP12 (ENSSBOG00000023275)	ZFPM2 (ENSSBOG00000021615) ##22	OXR1 (ENSSBOG00000032819)	ABRA (ENSSBOG00000026553)	ENSSBOG00000021619	ENSSBOG00000035671	ANGPT1 (ENSSBOG00000030985)	RSPO2 (ENSSBOG00000022676)	EIF3E (ENSSBOG00000030471)	EMC2 (ENSSBOG00000021278)	TRHR (ENSSBOG00000000592) ##23	NUDCD1 (ENSSBOG00000023373)	ENY2 (ENSSBOG00000027777)	PKHD1L1 (ENSSBOG00000025918)	EBAG9 (ENSSBOG00000026346)	ENSSBOG00000028433	SYBU (ENSSBOG00000020397)
Mas night monkey	MODERN SPECIES	845								FZD6 (ENSANAG00000020921)	CTHRC1 (ENSANAG00000022546)	SLC25A32 (ENSANAG00000023911)	ENSANAG00000020798	RIMS2 (ENSANAG00000019474)	DCSTAMP (ENSANAG00000026415)	DPYS (ENSANAG00000035274)	LRP12 (ENSANAG00000026015)	ZFPM2 (ENSANAG00000029770) ##22	OXR1 (ENSANAG00000026663)	ABRA (ENSANAG00000027886)	ARAP2 (ENSANAG00000027087)	DTHD1 (ENSANAG00000025232)	NWD2 (ENSANAG00000036883)	C4orf19 (ENSANAG00000031125)	RELL1 (ENSANAG00000034604)	ENSANAG00000034818	TBC1D1 (ENSANAG00000025477)	ENSANAG00000021832	ENSANAG00000027982	KLF3 (ENSANAG00000009263)	TLR6 (ENSANAG00000031860)	FAM114A1 (ENSANAG00000020424)	TMEM156 (ENSANAG00000024309)
Tarsier	MODERN SPECIES	4926															ENSTSYG00000029153	ZFPM2 (ENSTSYG00000034291) ##22
Strepsirrhini	ANCESTRAL SPECIES	15	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Lemuriformes	ANCESTRAL SPECIES	24	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Mouse lemur	MODERN SPECIES	31	ODF1 (ENSMICG00000005796)	KLF10 (ENSMICG00000037141)	AZIN1 (ENSMICG00000033696)	ENSMICG00000045613	ENSMICG00000046928	ATP6V1C1 (ENSMICG00000009013)	BAALC (ENSMICG00000009037)	FZD6 (ENSMICG00000027475)	CTHRC1 (ENSMICG00000006894)	SLC25A32 (ENSMICG00000006898)	DCAF13 (ENSMICG00000006907)	RIMS2 (ENSMICG00000015809)	DCSTAMP (ENSMICG00000013452)	DPYS (ENSMICG00000013458)	LRP12 (ENSMICG00000048008)	ZFPM2 (ENSMICG00000001099) ##22	OXR1 (ENSMICG00000037117)	ABRA (ENSMICG00000042866)	ANGPT1 (ENSMICG00000010498)	RSPO2 (ENSMICG00000010503)	ENSMICG00000030407	ENSMICG00000045979	EMC2 (ENSMICG00000006145)	TRHR (ENSMICG00000000934) ##23	NUDCD1 (ENSMICG00000012937)	ENY2 (ENSMICG00000012948)	PKHD1L1 (ENSMICG00000012952)	EBAG9 (ENSMICG00000013014)	SYBU (ENSMICG00000013019)	ENSMICG00000045891	KCNV1 (ENSMICG00000044286)
Lemuriformes_a	ANCESTRAL SPECIES	46	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.q	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Coquerels sifaka	MODERN SPECIES	331												ENSPCOG00000016200	DCSTAMP (ENSPCOG00000013310)	DPYS (ENSPCOG00000019021)	LRP12 (ENSPCOG00000010722)	ZFPM2 (ENSPCOG00000019118) ##22	OXR1 (ENSPCOG00000022517)	ABRA (ENSPCOG00000025480)	ENSPCOG00000022362	ANGPT1 (ENSPCOG00000022904)	ENSPCOG00000001728	RSPO2 (ENSPCOG00000018538)	EIF3E (ENSPCOG00000017519)	EMC2 (ENSPCOG00000015605)	TRHR (ENSPCOG00000017874) ##23	ENSPCOG00000016491	ENSPCOG00000018931	PKHD1L1 (ENSPCOG00000012396)	SYBU (ENSPCOG00000015516)	KCNV1 (ENSPCOG00000003608)	ENSPCOG00000024222
Greater bamboo lemur	MODERN SPECIES	713	ODF1 (ENSPSMG00000013746)	ENSPSMG00000013731	ENSPSMG00000013722	ENSPSMG00000013703	AZIN1 (ENSPSMG00000013646)	ATP6V1C1 (ENSPSMG00000013550)	BAALC (ENSPSMG00000013513)	FZD6 (ENSPSMG00000013502)	CTHRC1 (ENSPSMG00000013487)	SLC25A32 (ENSPSMG00000013458)	DCAF13 (ENSPSMG00000013380)	RIMS2 (ENSPSMG00000013297)	DCSTAMP (ENSPSMG00000013218)	DPYS (ENSPSMG00000013212)	LRP12 (ENSPSMG00000013185)	ZFPM2 (ENSPSMG00000013142) ##22	OXR1 (ENSPSMG00000013107)	ABRA (ENSPSMG00000013031)	ANGPT1 (ENSPSMG00000013015)	RSPO2 (ENSPSMG00000012979)	EIF3E (ENSPSMG00000012941)	EMC2 (ENSPSMG00000012884)	TMEM74 (ENSPSMG00000012867)	TRHR (ENSPSMG00000012862) ##23	NUDCD1 (ENSPSMG00000012848)	ENY2 (ENSPSMG00000012826)	PKHD1L1 (ENSPSMG00000012788)	EBAG9 (ENSPSMG00000012664)	SYBU (ENSPSMG00000012599)	KCNV1 (ENSPSMG00000012520)
Bushbaby	MODERN SPECIES	119	UBR5 (ENSOGAG00000004491)	ODF1 (ENSOGAG00000014525)	KLF10 (ENSOGAG00000014528)	ENSOGAG00000031370	AZIN1 (ENSOGAG00000002265)	ATP6V1C1 (ENSOGAG00000002267)	ENSOGAG00000025678	FZD6 (ENSOGAG00000002273)	CTHRC1 (ENSOGAG00000002275)	SLC25A32 (ENSOGAG00000002276)	DCAF13 (ENSOGAG00000002277)	RIMS2 (ENSOGAG00000014146)	DCSTAMP (ENSOGAG00000014155)	DPYS (ENSOGAG00000014157)	LRP12 (ENSOGAG00000028805)	ZFPM2 (ENSOGAG00000027431) ##22	ENSOGAG00000025407	OXR1 (ENSOGAG00000013388)	ABRA (ENSOGAG00000013394)	ENSOGAG00000025095	ANGPT1 (ENSOGAG00000016743)	RSPO2 (ENSOGAG00000034830)	EIF3E (ENSOGAG00000010542)	EMC2 (ENSOGAG00000010105)	TMEM74 (ENSOGAG00000013901)	TRHR (ENSOGAG00000006515) ##23	NUDCD1 (ENSOGAG00000006518)	ENY2 (ENSOGAG00000030254)	PKHD1L1 (ENSOGAG00000006525)	EBAG9 (ENSOGAG00000006554)	SYBU (ENSOGAG00000006559)
Laurasiatheria	ANCESTRAL SPECIES	18	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Laurasiatheria_a	ANCESTRAL SPECIES	20	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Artiodactyla	ANCESTRAL SPECIES	20	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Suina	ANCESTRAL SPECIES	26	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Chacoan peccary	MODERN SPECIES	114	UBR5 (ENSCWAG00000016332)	ODF1 (ENSCWAG00000016464)	KLF10 (ENSCWAG00000016499)	AZIN1 (ENSCWAG00000016526)	ATP6V1C1 (ENSCWAG00000016577)	ENSCWAG00000016641	ENSCWAG00000016666	FZD6 (ENSCWAG00000016680)	CTHRC1 (ENSCWAG00000016724)	SLC25A32 (ENSCWAG00000016770)	DCAF13 (ENSCWAG00000016810)	RIMS2 (ENSCWAG00000016958)	ENSCWAG00000019163	DPYS (ENSCWAG00000019181)	LRP12 (ENSCWAG00000007843)	ZFPM2 (ENSCWAG00000007980) ##22	OXR1 (ENSCWAG00000008207)	ABRA (ENSCWAG00000008840)	ANGPT1 (ENSCWAG00000008884)	RSPO2 (ENSCWAG00000009178)	ENSCWAG00000009289	EIF3E (ENSCWAG00000009327)	EMC2 (ENSCWAG00000009435)	TMEM74 (ENSCWAG00000009564)	TRHR (ENSCWAG00000009587) ##23	NUDCD1 (ENSCWAG00000009615)	ENY2 (ENSCWAG00000009688)	PKHD1L1 (ENSCWAG00000009767)	EBAG9 (ENSCWAG00000010267)	SYBU (ENSCWAG00000010321)	KCNV1 (ENSCWAG00000010710)
Pig	MODERN SPECIES	12	KLF10 (ENSSSCG00000027480)	AZIN1 (ENSSSCG00000023873)	ATP6V1C1 (ENSSSCG00000006054)	BAALC (ENSSSCG00000059124)	ENSSSCG00000056544	FZD6 (ENSSSCG00000006052)	CTHRC1 (ENSSSCG00000006051)	ENSSSCG00000049578	SLC25A32 (ENSSSCG00000006049)	DCAF13 (ENSSSCG00000006048)	ENSSSCG00000051099	RIMS2 (ENSSSCG00000031957)	DCSTAMP (ENSSSCG00000006043)	DPYS (ENSSSCG00000006040)	LRP12 (ENSSSCG00000006039)	ZFPM2 (ENSSSCG00000006038) ##22	ENSSSCG00000044983	ENSSSCG00000054113	ENSSSCG00000054725	OXR1 (ENSSSCG00000006037)	ABRA (ENSSSCG00000031728)	ANGPT1 (ENSSSCG00000006035)	RSPO2 (ENSSSCG00000006034)	EIF3E (ENSSSCG00000006033)	EMC2 (ENSSSCG00000006032)	TMEM74 (ENSSSCG00000006031)	TRHR (ENSSSCG00000040768) ##23	NUDCD1 (ENSSSCG00000006029)	ENY2 (ENSSSCG00000038444)	PKHD1L1 (ENSSSCG00000006025)	EBAG9 (ENSSSCG00000006024)
Artiodactyla_a	ANCESTRAL SPECIES	20	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Artiodactyla_b	ANCESTRAL SPECIES	20	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Cetacea	ANCESTRAL SPECIES	17	ENSGT00940000159405	ENSGT00950000182995.e.b.c.a	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01030000234881	ENSGT00390000012436.d	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.c	ENSGT00390000011748.f.a	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Odontoceti	ANCESTRAL SPECIES	20	ENSGT00940000159405	ENSGT00950000182995.e.b.c.a	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01030000234881	ENSGT00390000012436.d	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.c	ENSGT00390000011748.f.a.a.a	ENSGT00940000157594	ENSGT00390000004040.l	ENSGT00520000055634.a	ENSGT00940000165982	ENSGT00940000159740
Odontoceti_a	ANCESTRAL SPECIES	17	ENSGT00940000159405	ENSGT00950000182995.e.b.c.a	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01030000234881	ENSGT00390000012436.d	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.c	ENSGT00390000011748.f.a.a.a	ENSGT00940000157594	ENSGT00390000004040.l	ENSGT00520000055634.a	ENSGT00940000165982	ENSGT00940000159740
Odontoceti_b	ANCESTRAL SPECIES	19	ENSGT00950000182995.e.b.c.a	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01030000234881	ENSGT00390000012436.d	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT01050000245600	ENSGT00530000063823.b.b ##22	ENSGT00940000160886.a.b	ENSGT00940000166403.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00390000012084.x	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.c	ENSGT00390000011748.f.a.a.a	ENSGT00940000157594	ENSGT00390000004040.l
Monodontidae	ANCESTRAL SPECIES	20	ENSGT00950000182995.e.b.c.a	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01030000234881	ENSGT00390000012436.d	ENSGT00920000149145	ENSGT00390000005711	ENSGT00910000147876	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT01050000245600	ENSGT00530000063823.b.b ##22	ENSGT00940000160886.a.b	ENSGT00940000166403.a	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00390000012084.x	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.c	ENSGT00390000011748.f.a.a.a	ENSGT00940000157594	ENSGT00390000004040.l
Beluga whale	MODERN SPECIES	9	FZD6 (ENSDLEG00000000391)	CTHRC1 (ENSDLEG00000000371)	ENSDLEG00000000359	ENSDLEG00000000349	SLC25A32 (ENSDLEG00000000328)	DCAF13 (ENSDLEG00000000311)	ENSDLEG00000000297	ENSDLEG00000000242	ENSDLEG00000000209	RIMS2 (ENSDLEG00000000186)	DCSTAMP (ENSDLEG00000000167)	ENSDLEG00000000154	DPYS (ENSDLEG00000000131)	LRP12 (ENSDLEG00000000092)	ENSDLEG00000000057	ZFPM2 (ENSDLEG00000003374) ##22	ENSDLEG00000003363	ENSDLEG00000003356	OXR1 (ENSDLEG00000003267)	ABRA (ENSDLEG00000003246)	ANGPT1 (ENSDLEG00000003220)	ENSDLEG00000003203	RSPO2 (ENSDLEG00000003200)	EMC2 (ENSDLEG00000003125)	TRHR (ENSDLEG00000003100) ##23	NUDCD1 (ENSDLEG00000003053)	ENSDLEG00000003039	PKHD1L1 (ENSDLEG00000002625)	EBAG9 (ENSDLEG00000002524)	SYBU (ENSDLEG00000002487)	KCNV1 (ENSDLEG00000002474)
Narwhal	MODERN SPECIES	300	ENSMMNG00015011185	FZD6 (ENSMMNG00015012505)	CTHRC1 (ENSMMNG00015012434)	ENSMMNG00015012410	ENSMMNG00015012400	SLC25A32 (ENSMMNG00015012371)	DCAF13 (ENSMMNG00015012324)	ENSMMNG00015012298	ENSMMNG00015012289	RIMS2 (ENSMMNG00015012120)	ENSMMNG00015012036	DCSTAMP (ENSMMNG00015012025)	DPYS (ENSMMNG00015011994)	LRP12 (ENSMMNG00015011972)	ENSMMNG00015011952	ZFPM2 (ENSMMNG00015011932) ##22	ENSMMNG00015011912	ENSMMNG00015011898	OXR1 (ENSMMNG00015011674)	ABRA (ENSMMNG00015011560)	ANGPT1 (ENSMMNG00015011529)	ENSMMNG00015011513	RSPO2 (ENSMMNG00015011490)	EIF3E (ENSMMNG00015011463)	EMC2 (ENSMMNG00015011417)	TMEM74 (ENSMMNG00015011354)	TRHR (ENSMMNG00015011345) ##23	NUDCD1 (ENSMMNG00015011320)	ENSMMNG00015011298	PKHD1L1 (ENSMMNG00015011184)	ENSMMNG00015011122
Vaquita	MODERN SPECIES	8	ATP6V1C1 (ENSPSNG00000019988)	ENSPSNG00000020051	FZD6 (ENSPSNG00000020075)	CTHRC1 (ENSPSNG00000020136)	ENSPSNG00000020189	SLC25A32 (ENSPSNG00000020222)	DCAF13 (ENSPSNG00000020283)	ENSPSNG00000020356	RIMS2 (ENSPSNG00000020584)	ENSPSNG00000021404	ENSPSNG00000021414	DCSTAMP (ENSPSNG00000021445)	DPYS (ENSPSNG00000021479)	LRP12 (ENSPSNG00000021535)	ENSPSNG00000021567	ZFPM2 (ENSPSNG00000021587) ##22	OXR1 (ENSPSNG00000021705)	ENSPSNG00000021852	ENSPSNG00000021865	ABRA (ENSPSNG00000021875)	ANGPT1 (ENSPSNG00000021892)	ENSPSNG00000004814	RSPO2 (ENSPSNG00000004950)	EIF3E (ENSPSNG00000005084)	EMC2 (ENSPSNG00000005113)	TMEM74 (ENSPSNG00000005140)	TRHR (ENSPSNG00000005157) ##23	NUDCD1 (ENSPSNG00000005185)	ENSPSNG00000005225	PKHD1L1 (ENSPSNG00000005324)	ENSPSNG00000005584
Dolphin	MODERN SPECIES	1799																ZFPM2 (ENSTTRG00000004168) ##22
Sperm whale	MODERN SPECIES	6	KLF10 (ENSPCTG00005004359)	ENSPCTG00005004327	ATP6V1C1 (ENSPCTG00005004291)	ENSPCTG00005004185	ENSPCTG00005021505	FZD6 (ENSPCTG00005021489)	CTHRC1 (ENSPCTG00005021459)	ENSPCTG00005021431	SLC25A32 (ENSPCTG00005021382)	DCAF13 (ENSPCTG00005021269)	ENSPCTG00005021242	RIMS2 (ENSPCTG00005020332)	DCSTAMP (ENSPCTG00005020198)	DPYS (ENSPCTG00005020144)	LRP12 (ENSPCTG00005020051)	ZFPM2 (ENSPCTG00005019949) ##22	ENSPCTG00005019924	OXR1 (ENSPCTG00005018957)	ABRA (ENSPCTG00005018806)	ANGPT1 (ENSPCTG00005018675)	RSPO2 (ENSPCTG00005018512)	EIF3E (ENSPCTG00005018472)	EMC2 (ENSPCTG00005018353)	TMEM74 (ENSPCTG00005018327)	ENSPCTG00005018284	KCNV1 (ENSPCTG00005018241)	ENSPCTG00005018190	SYBU (ENSPCTG00005017886)	EBAG9 (ENSPCTG00005017808)	PKHD1L1 (ENSPCTG00005017025)	ENY2 (ENSPCTG00005016880)
Blue whale	MODERN SPECIES	8	KLF10 (ENSBMSG00010017375)	ENSBMSG00010017346	ENSBMSG00010017322	ATP6V1C1 (ENSBMSG00010017243)	BAALC (ENSBMSG00010017221)	FZD6 (ENSBMSG00010017195)	CTHRC1 (ENSBMSG00010017171)	ENSBMSG00010017160	ENSBMSG00010017145	SLC25A32 (ENSBMSG00010017123)	DCAF13 (ENSBMSG00010017074)	ENSBMSG00010017040	RIMS2 (ENSBMSG00010014935)	DPYS (ENSBMSG00010014661)	LRP12 (ENSBMSG00010014600)	ZFPM2 (ENSBMSG00010014545) ##22	OXR1 (ENSBMSG00010013992)	ABRA (ENSBMSG00010013771)	ANGPT1 (ENSBMSG00010013736)	ENSBMSG00010013717	ENSBMSG00010013702	ENSBMSG00010013695	RSPO2 (ENSBMSG00010013675)	EIF3E (ENSBMSG00010013655)	ENSBMSG00010013650	EMC2 (ENSBMSG00010013639)	TMEM74 (ENSBMSG00010013628)	TRHR (ENSBMSG00010013619) ##23	ENSBMSG00010013606	ENSBMSG00010013592	PKHD1L1 (ENSBMSG00010013505)
Pecora	ANCESTRAL SPECIES	20	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Yarkand deer	MODERN SPECIES	13	KLF10 (ENSCHYG00000017815)	AZIN1 (ENSCHYG00000017677)	ATP6V1C1 (ENSCHYG00000017546)	BAALC (ENSCHYG00000017446)	FZD6 (ENSCHYG00000017355)	CTHRC1 (ENSCHYG00000017242)	SLC25A32 (ENSCHYG00000017181)	DCAF13 (ENSCHYG00000017079)	ENSCHYG00000017034	RIMS2 (ENSCHYG00000015777)	DCSTAMP (ENSCHYG00000015612)	ENSCHYG00000015516	DPYS (ENSCHYG00000015444)	ENSCHYG00000015410	LRP12 (ENSCHYG00000015263)	ZFPM2 (ENSCHYG00000015057) ##22	OXR1 (ENSCHYG00000013750)	ABRA (ENSCHYG00000013640)	ANGPT1 (ENSCHYG00000013482)	ENSCHYG00000013446	RSPO2 (ENSCHYG00000013353)	EIF3E (ENSCHYG00000013258)	EMC2 (ENSCHYG00000013204)	TMEM74 (ENSCHYG00000013176)	TRHR (ENSCHYG00000013156) ##23	ENSCHYG00000013141	NUDCD1 (ENSCHYG00000013032)	ENSCHYG00000013001	PKHD1L1 (ENSCHYG00000012598)	EBAG9 (ENSCHYG00000012495)	SYBU (ENSCHYG00000012356)
Percora_a	ANCESTRAL SPECIES	23	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Bovidae	ANCESTRAL SPECIES	22	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Caprinae	ANCESTRAL SPECIES	18	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Rambouillet Sheep	MODERN SPECIES	25	UBR5 (ENSOARG00020020960)	ODF1 (ENSOARG00020020904)	KLF10 (ENSOARG00020020845)	AZIN1 (ENSOARG00020020781)	ATP6V1C1 (ENSOARG00020020713)	ENSOARG00020020692	ENSOARG00020020642	FZD6 (ENSOARG00020020543)	CTHRC1 (ENSOARG00020020491)	SLC25A32 (ENSOARG00020020466)	DCAF13 (ENSOARG00020020364)	RIMS2 (ENSOARG00020017470)	ENSOARG00020017361	DPYS (ENSOARG00020017283)	LRP12 (ENSOARG00020017146)	ZFPM2 (ENSOARG00020016754) ##22	ENSOARG00020016697	OXR1 (ENSOARG00020015635)	ABRA (ENSOARG00020015558)	ANGPT1 (ENSOARG00020015343)	RSPO2 (ENSOARG00020015141)	EIF3E (ENSOARG00020014992)	ENSOARG00020014931	TMEM74 (ENSOARG00020014900)	ENSOARG00020014868	TRHR (ENSOARG00020014776) ##23	NUDCD1 (ENSOARG00020014651)	ENY2 (ENSOARG00020014584)	PKHD1L1 (ENSOARG00020013571)	EBAG9 (ENSOARG00020013511)	SYBU (ENSOARG00020013212)
Goat	MODERN SPECIES	5	UBR5 (ENSCHIG00000020937)	ODF1 (ENSCHIG00000024723)	KLF10 (ENSCHIG00000017034)	AZIN1 (ENSCHIG00000022939)	ATP6V1C1 (ENSCHIG00000017966)	ENSCHIG00000022247	BAALC (ENSCHIG00000006946)	FZD6 (ENSCHIG00000017240)	CTHRC1 (ENSCHIG00000012791)	SLC25A32 (ENSCHIG00000015415)	DCAF13 (ENSCHIG00000020556)	RIMS2 (ENSCHIG00000013804)	DCSTAMP (ENSCHIG00000021137)	DPYS (ENSCHIG00000025287)	LRP12 (ENSCHIG00000011346)	ZFPM2 (ENSCHIG00000015764) ##22	OXR1 (ENSCHIG00000020362)	ABRA (ENSCHIG00000024017)	ENSCHIG00000011457	ANGPT1 (ENSCHIG00000015819)	RSPO2 (ENSCHIG00000020360)	EIF3E (ENSCHIG00000004339)	EMC2 (ENSCHIG00000020722)	ENSCHIG00000017993	TMEM74 (ENSCHIG00000008377)	TRHR (ENSCHIG00000021032) ##23	NUDCD1 (ENSCHIG00000027249)	ENY2 (ENSCHIG00000016464)	PKHD1L1 (ENSCHIG00000011818)	ENSCHIG00000012764	SYBU (ENSCHIG00000026780)
Bovinae	ANCESTRAL SPECIES	18	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Bos	ANCESTRAL SPECIES	21	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01100000263480.a.a.b.b.b.a.a.a.b.a.a.b.a.a.b.b	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153340.B.d	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Bos_a	ANCESTRAL SPECIES	42	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01100000263480.a.a.b.b.b.a.a.a.b.a.a.b.a.a.b.b	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153340.B.d	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Domestic yak	MODERN SPECIES	9	ENSBGRG00000007984	ENSBGRG00000007976	ENSBGRG00000007948	ATP6V1C1 (ENSBGRG00000007817)	BAALC (ENSBGRG00000007758)	FZD6 (ENSBGRG00000007688)	ENSBGRG00000007639	ENSBGRG00000007590	ENSBGRG00000007570	SLC25A32 (ENSBGRG00000007419)	DCAF13 (ENSBGRG00000007213)	RIMS2 (ENSBGRG00000006606)	DCSTAMP (ENSBGRG00000006525)	DPYS (ENSBGRG00000006417)	LRP12 (ENSBGRG00000006367)	ZFPM2 (ENSBGRG00000006238) ##22	ENSBGRG00000006224	OXR1 (ENSBGRG00000005822)	ABRA (ENSBGRG00000005757)	ENSBGRG00000005749	ENSBGRG00000005741	ANGPT1 (ENSBGRG00000005544)	ENSBGRG00000005522	RSPO2 (ENSBGRG00000005327)	EIF3E (ENSBGRG00000005170)	EMC2 (ENSBGRG00000005080)	ENSBGRG00000005060	TMEM74 (ENSBGRG00000005049)	TRHR (ENSBGRG00000005037) ##23	ENSBGRG00000005028	NUDCD1 (ENSBGRG00000004945)
Wild yak	MODERN SPECIES	669												ENSBMUG00000010217	ENSBMUG00000010240	DPYS (ENSBMUG00000010275)	LRP12 (ENSBMUG00000010306)	ZFPM2 (ENSBMUG00000010335) ##22	OXR1 (ENSBMUG00000010447)	ENSBMUG00000010487	ABRA (ENSBMUG00000010499)	ANGPT1 (ENSBMUG00000010535)	ENSBMUG00000010557
Bos_b	ANCESTRAL SPECIES	25	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT01100000263480.a.a.b.b.b.a.a.a.b.a.a.b.a.a.b.b	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000153340.B.d	ENSGT00870000136549.e.a	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Hybrid Bos Indicus	MODERN SPECIES	5	KLF10 (ENSBIXG00005012828)	AZIN1 (ENSBIXG00005012889)	ENSBIXG00005012917	ATP6V1C1 (ENSBIXG00005012954)	ENSBIXG00005001470	FZD6 (ENSBIXG00005012995)	CTHRC1 (ENSBIXG00005013017)	ENSBIXG00005001481	SLC25A32 (ENSBIXG00005013054)	DCAF13 (ENSBIXG00005013107)	RIMS2 (ENSBIXG00005014041)	DCSTAMP (ENSBIXG00005001851)	ENSBIXG00005001856	DPYS (ENSBIXG00005014222)	LRP12 (ENSBIXG00005014251)	ZFPM2 (ENSBIXG00005014352) ##22	ENSBIXG00005014386	OXR1 (ENSBIXG00005002092)	ABRA (ENSBIXG00005014885)	ANGPT1 (ENSBIXG00005014927)	ENSBIXG00005014968	RSPO2 (ENSBIXG00005015022)	EIF3E (ENSBIXG00005015072)	ENSBIXG00005002217	EMC2 (ENSBIXG00005005978)	TMEM74 (ENSBIXG00005006556)	TRHR (ENSBIXG00005015179) ##23	NUDCD1 (ENSBIXG00005015298)	ENY2 (ENSBIXG00005015347)	ENSBIXG00005015352	PKHD1L1 (ENSBIXG00005015375)
Cow	MODERN SPECIES	5	ODF1 (ENSBTAG00000003445)	KLF10 (ENSBTAG00000014396)	AZIN1 (ENSBTAG00000007943)	ATP6V1C1 (ENSBTAG00000013513)	BAALC (ENSBTAG00000026242)	FZD6 (ENSBTAG00000010529)	CTHRC1 (ENSBTAG00000032591)	SLC25A32 (ENSBTAG00000033902)	DCAF13 (ENSBTAG00000021449)	RIMS2 (ENSBTAG00000054448)	RIMS2 (ENSBTAG00000003827)	DCSTAMP (ENSBTAG00000021240)	DPYS (ENSBTAG00000021887)	ENSBTAG00000051568	LRP12 (ENSBTAG00000011516)	ZFPM2 (ENSBTAG00000001649) ##22	OXR1 (ENSBTAG00000008285)	ABRA (ENSBTAG00000018352)	ANGPT1 (ENSBTAG00000014051)	ENSBTAG00000008257	ENSBTAG00000006213	RSPO2 (ENSBTAG00000013598)	EIF3E (ENSBTAG00000006702)	EMC2 (ENSBTAG00000010006)	TMEM74 (ENSBTAG00000039141)	TRHR (ENSBTAG00000019997) ##23	NUDCD1 (ENSBTAG00000007386)	ENY2 (ENSBTAG00000007387)	PKHD1L1 (ENSBTAG00000026247)	EBAG9 (ENSBTAG00000037571)	SYBU (ENSBTAG00000032548)
American bison	MODERN SPECIES	3348	RRM2B (ENSBBBG00000002801)	ENSBBBG00000013565	ODF1 (ENSBBBG00000009052)	KLF10 (ENSBBBG00000013572)	AZIN1 (ENSBBBG00000002822)	ATP6V1C1 (ENSBBBG00000013629)	BAALC (ENSBBBG00000013635)	FZD6 (ENSBBBG00000002845)	ENSBBBG00000007653	SLC25A32 (ENSBBBG00000013671)	DCAF13 (ENSBBBG00000002883)	RIMS2 (ENSBBBG00000013786)	ENSBBBG00000013810	DPYS (ENSBBBG00000002960)	LRP12 (ENSBBBG00000002967)	ZFPM2 (ENSBBBG00000003004) ##22	OXR1 (ENSBBBG00000007656)	ABRA (ENSBBBG00000013972)	ANGPT1 (ENSBBBG00000013987)	ENSBBBG00000003076	RSPO2 (ENSBBBG00000003088)	EIF3E (ENSBBBG00000014013)	EMC2 (ENSBBBG00000003111)	TMEM74 (ENSBBBG00000014025)	TRHR (ENSBBBG00000003115) ##23	NUDCD1 (ENSBBBG00000014048)	ENY2 (ENSBBBG00000014060)	PKHD1L1 (ENSBBBG00000014115)	EBAG9 (ENSBBBG00000014126)	SYBU (ENSBBBG00000014133)	ENSBBBG00000014138
Siberian musk deer	MODERN SPECIES	175																ZFPM2 (ENSMMSG00000005890) ##22	OXR1 (ENSMMSG00000005950)	ABRA (ENSMMSG00000006167)	ANGPT1 (ENSMMSG00000006189)	RSPO2 (ENSMMSG00000006244)	EIF3E (ENSMMSG00000006302)
Camelidae	ANCESTRAL SPECIES	19	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Arabian camel	MODERN SPECIES	17	UBR5 (ENSCDRG00005015977)	ODF1 (ENSCDRG00005016109)	KLF10 (ENSCDRG00005016136)	AZIN1 (ENSCDRG00005016170)	ATP6V1C1 (ENSCDRG00005016211)	BAALC (ENSCDRG00005016307)	ENSCDRG00005016351	FZD6 (ENSCDRG00005016384)	CTHRC1 (ENSCDRG00005016428)	SLC25A32 (ENSCDRG00005016474)	DCAF13 (ENSCDRG00005016541)	RIMS2 (ENSCDRG00005017039)	DCSTAMP (ENSCDRG00005021035)	DPYS (ENSCDRG00005021042)	LRP12 (ENSCDRG00005021052)	ZFPM2 (ENSCDRG00005021070) ##22	OXR1 (ENSCDRG00005021079)	ABRA (ENSCDRG00005021136)	ANGPT1 (ENSCDRG00005021140)	RSPO2 (ENSCDRG00005021149)	EIF3E (ENSCDRG00005021164)	EMC2 (ENSCDRG00005021173)	TMEM74 (ENSCDRG00005021184)	TRHR (ENSCDRG00005021187) ##23	NUDCD1 (ENSCDRG00005021192)	ENY2 (ENSCDRG00005021203)	PKHD1L1 (ENSCDRG00005021263)	EBAG9 (ENSCDRG00005021349)	SYBU (ENSCDRG00005021365)	KCNV1 (ENSCDRG00005021422)	CSMD3 (ENSCDRG00005021527)
Alpaca	MODERN SPECIES	1883																ZFPM2 (ENSVPAG00000002284) ##22
Laurasiatheria_b	ANCESTRAL SPECIES	20	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Carnivora	ANCESTRAL SPECIES	22	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Caniformia	ANCESTRAL SPECIES	23	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Caniformia_b	ANCESTRAL SPECIES	22	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT01010000222830	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Ursidae	ANCESTRAL SPECIES	26	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B.z	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT01010000222830	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.f	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Ursus	ANCESTRAL SPECIES	46	ENSGT00390000013305.a.b	ENSGT00940000156357.e	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00950000185098	ENSGT00940000155187.B.z	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776.f	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
American black bear	MODERN SPECIES	478																ZFPM2 (ENSUAMG00000015158) ##22
Polar bear	MODERN SPECIES	157	UBR5 (ENSUMAG00000017960)	ODF1 (ENSUMAG00000019739)	KLF10 (ENSUMAG00000019751)	AZIN1 (ENSUMAG00000019764)	ATP6V1C1 (ENSUMAG00000019776)	BAALC (ENSUMAG00000019788)	FZD6 (ENSUMAG00000019795)	ENSUMAG00000019799	ENSUMAG00000019803	SLC25A32 (ENSUMAG00000019807)	DCAF13 (ENSUMAG00000019830)	RIMS2 (ENSUMAG00000019906)	DCSTAMP (ENSUMAG00000019942)	ENSUMAG00000019944	LRP12 (ENSUMAG00000019948)	ZFPM2 (ENSUMAG00000019959) ##22	ENSUMAG00000019975	OXR1 (ENSUMAG00000019984)	ABRA (ENSUMAG00000019994)	ANGPT1 (ENSUMAG00000020002)	RSPO2 (ENSUMAG00000020010)	EIF3E (ENSUMAG00000020022)	ENSUMAG00000020029	EMC2 (ENSUMAG00000020038)	TRHR (ENSUMAG00000020058) ##23	NUDCD1 (ENSUMAG00000020064)	ENY2 (ENSUMAG00000020072)	PKHD1L1 (ENSUMAG00000020105)	EBAG9 (ENSUMAG00000020279)	SYBU (ENSUMAG00000020286)	KCNV1 (ENSUMAG00000020300)
Giant Panda	MODERN SPECIES	19	ODF1 (ENSAMEG00000014784)	KLF10 (ENSAMEG00000014775)	ENSAMEG00000014773	AZIN1 (ENSAMEG00000014703)	ATP6V1C1 (ENSAMEG00000014655)	BAALC (ENSAMEG00000029918)	FZD6 (ENSAMEG00000016355)	ENSAMEG00000024088	CTHRC1 (ENSAMEG00000001620)	SLC25A32 (ENSAMEG00000028754)	DCAF13 (ENSAMEG00000001595)	RIMS2 (ENSAMEG00000005653)	DCSTAMP (ENSAMEG00000005684)	DPYS (ENSAMEG00000005690)	LRP12 (ENSAMEG00000005717)	ZFPM2 (ENSAMEG00000005726) ##22	OXR1 (ENSAMEG00000009243)	ABRA (ENSAMEG00000009310)	ENSAMEG00000009317	ANGPT1 (ENSAMEG00000015578)	RSPO2 (ENSAMEG00000012780)	EIF3E (ENSAMEG00000012790)	ENSAMEG00000023571	EMC2 (ENSAMEG00000012826)	TMEM74 (ENSAMEG00000018881)	TRHR (ENSAMEG00000012871) ##23	NUDCD1 (ENSAMEG00000012879)	ENSAMEG00000028670	PKHD1L1 (ENSAMEG00000012900)	EBAG9 (ENSAMEG00000006190)	SYBU (ENSAMEG00000029679)
Mustelinae	ANCESTRAL SPECIES	70	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT01010000222830	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
American mink	MODERN SPECIES	10	ENSNVIG00000000956	UBR5 (ENSNVIG00000000967)	ODF1 (ENSNVIG00000001125)	KLF10 (ENSNVIG00000001151)	AZIN1 (ENSNVIG00000001180)	ATP6V1C1 (ENSNVIG00000001221)	BAALC (ENSNVIG00000001290)	FZD6 (ENSNVIG00000001308)	CTHRC1 (ENSNVIG00000001341)	MFTC (ENSNVIG00000001350)	DCAF13 (ENSNVIG00000001369)	RIMS2 (ENSNVIG00000001435)	DCSTAMP (ENSNVIG00000001607)	DPYS (ENSNVIG00000001619)	LRP12 (ENSNVIG00000001672)	ZFPM2 (ENSNVIG00000001719) ##22	OXR1 (ENSNVIG00000001759)	ABRA (ENSNVIG00000002004)	ANGPT1 (ENSNVIG00000002025)	RSPO2 (ENSNVIG00000002075)	EIF3E (ENSNVIG00000002106)	ENSNVIG00000002125	EMC2 (ENSNVIG00000002131)	TMM74 (ENSNVIG00000002145)	TRHR (ENSNVIG00000002148) ##23	NUDCD1 (ENSNVIG00000002153)	ENY2 (ENSNVIG00000002190)	PKHD1L1 (ENSNVIG00000002211)	EBAG9 (ENSNVIG00000002352)	SYBU (ENSNVIG00000002383)	KCNV1 (ENSNVIG00000002553)
Ferret	MODERN SPECIES	325																ZFPM2 (ENSMPUG00000005985) ##22	OXR1 (ENSMPUG00000005957)	ABRA (ENSMPUG00000005948)	ANGPT1 (ENSMPUG00000005939)	RSPO2 (ENSMPUG00000005931)	EIF3E (ENSMPUG00000005924)	EMC2 (ENSMPUG00000005915)	TMEM74 (ENSMPUG00000020150)	ENSMPUG00000005907	ENSMPUG00000020149	TRHR (ENSMPUG00000005893) ##23	NUDCD1 (ENSMPUG00000005884)	ENY2 (ENSMPUG00000005873)	ENSMPUG00000005866	PKHD1L1 (ENSMPUG00000005714)	EBAG9 (ENSMPUG00000005709)
Canidae	ANCESTRAL SPECIES	33	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922.f	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.j.b	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Canis_lupus	ANCESTRAL SPECIES	19	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000154720.d	ENSGT00390000013853	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922.f	ENSGT01020000230401.a.a.a.i.b.g	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748.j.b	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000155935.h
Dog	MODERN SPECIES	4	ENSCAFG00845008121	ENSCAFG00845008149	ATP6V1C1 (ENSCAFG00845008268)	BAALC (ENSCAFG00845008431)	ENSCAFG00845008474	ENSCAFG00845008487	FZD6 (ENSCAFG00845008513)	CTHRC1 (ENSCAFG00845008553)	SLC25A32 (ENSCAFG00845008584)	DCAF13 (ENSCAFG00845008632)	ENSCAFG00845008711	RIMS2 (ENSCAFG00845008955)	DCSTAMP (ENSCAFG00845010012)	DPYS (ENSCAFG00845010050)	LRP12 (ENSCAFG00845010152)	ZFPM2 (ENSCAFG00845010270) ##22	ENSCAFG00845010384	OXR1 (ENSCAFG00845010507)	ABRA (ENSCAFG00845010850)	SF3A3 (ENSCAFG00845010874)	ANGPT1 (ENSCAFG00845010910)	RSPO2 (ENSCAFG00845010981)	EIF3E (ENSCAFG00845011027)	EMC2 (ENSCAFG00845011107)	ENSCAFG00845011139	TMEM74 (ENSCAFG00845011167)	TRHR (ENSCAFG00845011196) ##23	NUDCD1 (ENSCAFG00845011288)	ENY2 (ENSCAFG00845011444)	PKHD1L1 (ENSCAFG00845011869)	EBAG9 (ENSCAFG00845013428)
Dingo	MODERN SPECIES	88	ENSCAFG00020002930	ATP6V1C1 (ENSCAFG00020002943)	ENSCAFG00020002949	ENSCAFG00020002956	ENSCAFG00020002957	ENSCAFG00020002963	FZD6 (ENSCAFG00020002971)	CTHRC1 (ENSCAFG00020002983)	SLC25A32 (ENSCAFG00020003015)	DCAF13 (ENSCAFG00020003044)	ENSCAFG00020003051	RIMS2 (ENSCAFG00020003071)	DCSTAMP (ENSCAFG00020003225)	DPYS (ENSCAFG00020003238)	LRP12 (ENSCAFG00020003246)	ZFPM2 (ENSCAFG00020003252) ##22	OXR1 (ENSCAFG00020003286)	ABRA (ENSCAFG00020003289)	ANGPT1 (ENSCAFG00020003297)	RSPO2 (ENSCAFG00020003341)	EIF3E (ENSCAFG00020003350)	ENSCAFG00020003360	ENSCAFG00020003374	TMEM74 (ENSCAFG00020003393)	TRHR (ENSCAFG00020003402) ##23	NUDCD1 (ENSCAFG00020003417)	ENY2 (ENSCAFG00020003420)	PKHD1L1 (ENSCAFG00020003456)	EBAG9 (ENSCAFG00020003724)	SYBU (ENSCAFG00020003730)	ENSCAFG00020003744
Red fox	MODERN SPECIES	17	ODF1 (ENSVVUG00000016754)	KLF10 (ENSVVUG00000016762)	AZIN1 (ENSVVUG00000016768)	ATP6V1C1 (ENSVVUG00000016786)	ENSVVUG00000016811	ENSVVUG00000016817	ENSVVUG00000016821	FZD6 (ENSVVUG00000016827)	CTHRC1 (ENSVVUG00000016836)	SLC25A32 (ENSVVUG00000016846)	DCAF13 (ENSVVUG00000016884)	RIMS2 (ENSVVUG00000016949)	DCSTAMP (ENSVVUG00000017026)	DPYS (ENSVVUG00000017033)	LRP12 (ENSVVUG00000017042)	ZFPM2 (ENSVVUG00000017054) ##22	OXR1 (ENSVVUG00000017071)	ABRA (ENSVVUG00000017135)	ENSVVUG00000017152	ANGPT1 (ENSVVUG00000017163)	RSPO2 (ENSVVUG00000017170)	EIF3E (ENSVVUG00000017177)	ENSVVUG00000017185	ENSVVUG00000017208	ENSVVUG00000017215	TRPC7 (ENSVVUG00000017265)	SMAD5 (ENSVVUG00000017350)	TGFBI (ENSVVUG00000017365)	LECT2 (ENSVVUG00000017373)	ENSVVUG00000017399	IL9 (ENSVVUG00000017411)
Felidae	ANCESTRAL SPECIES	22	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Panthera	ANCESTRAL SPECIES	16	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Panthera_a	ANCESTRAL SPECIES	16	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000167225	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
leopard	MODERN SPECIES	52	UBR5 (ENSPPRG00000001290)	ODF1 (ENSPPRG00000001703)	KLF10 (ENSPPRG00000002095)	AZIN1 (ENSPPRG00000002335)	ENSPPRG00000002886	ATP6V1C1 (ENSPPRG00000003041)	BAALC (ENSPPRG00000003098)	FZD6 (ENSPPRG00000004117)	CTHRC1 (ENSPPRG00000004807)	SLC25A32 (ENSPPRG00000005112)	DCAF13 (ENSPPRG00000005766)	RIMS2 (ENSPPRG00000008568)	ENSPPRG00000008975	DPYS (ENSPPRG00000009092)	LRP12 (ENSPPRG00000009849)	ZFPM2 (ENSPPRG00000010402) ##22	OXR1 (ENSPPRG00000012345)	ABRA (ENSPPRG00000013192)	ENSPPRG00000013445	ANGPT1 (ENSPPRG00000014659)	RSPO2 (ENSPPRG00000016379)	EIF3E (ENSPPRG00000018150)	EMC2 (ENSPPRG00000018696)	TMEM74 (ENSPPRG00000016236)	TRHR (ENSPPRG00000021745) ##23	NUDCD1 (ENSPPRG00000021921)	ENY2 (ENSPPRG00000022526)	PKHD1L1 (ENSPPRG00000001810)	ENSPPRG00000002404	SYBU (ENSPPRG00000006051)	KCNV1 (ENSPPRG00000006232)
lion	MODERN SPECIES	509	UBR5 (ENSPLOG00000009716)	ODF1 (ENSPLOG00000009637)	KLF10 (ENSPLOG00000009593)	AZIN1 (ENSPLOG00000009568)	ENSPLOG00000009551	ATP6V1C1 (ENSPLOG00000009518)	ENSPLOG00000009498	FZD6 (ENSPLOG00000009428)	CTHRC1 (ENSPLOG00000009353)	SLC25A32 (ENSPLOG00000009280)	DCAF13 (ENSPLOG00000009090)	RIMS2 (ENSPLOG00000008074)	DCSTAMP (ENSPLOG00000007892)	DPYS (ENSPLOG00000007853)	LRP12 (ENSPLOG00000007820)	ZFPM2 (ENSPLOG00000007771) ##22	OXR1 (ENSPLOG00000007554)	ABRA (ENSPLOG00000007487)	ENSPLOG00000007460	ANGPT1 (ENSPLOG00000007426)	RSPO2 (ENSPLOG00000007380)	EIF3E (ENSPLOG00000007357)	EMC2 (ENSPLOG00000007338)	TMEM74 (ENSPLOG00000007328)	TRHR (ENSPLOG00000007310) ##23	NUDCD1 (ENSPLOG00000007264)	ENY2 (ENSPLOG00000007239)	PKHD1L1 (ENSPLOG00000007053)	EBAG9 (ENSPLOG00000007001)	SYBU (ENSPLOG00000006906)	KCNV1 (ENSPLOG00000006865)
Tiger	MODERN SPECIES	69	RRM2B (ENSPTIG00000016149)	UBR5 (ENSPTIG00000016223)	ODF1 (ENSPTIG00000016572)	KLF10 (ENSPTIG00000016575)	AZIN1 (ENSPTIG00000016587)	ATP6V1C1 (ENSPTIG00000016634)	BAALC (ENSPTIG00000016700)	FZD6 (ENSPTIG00000016719)	ENSPTIG00000016759	SLC25A32 (ENSPTIG00000016767)	DCAF13 (ENSPTIG00000016790)	RIMS2 (ENSPTIG00000016850)	ENSPTIG00000016965	DPYS (ENSPTIG00000016974)	LRP12 (ENSPTIG00000016992)	ZFPM2 (ENSPTIG00000017006) ##22	OXR1 (ENSPTIG00000017060)	ABRA (ENSPTIG00000017155)	ANGPT1 (ENSPTIG00000017177)	RSPO2 (ENSPTIG00000017201)	EIF3E (ENSPTIG00000017225)	EMC2 (ENSPTIG00000017249)	TMEM74 (ENSPTIG00000008316)	TRHR (ENSPTIG00000017267) ##23	NUDCD1 (ENSPTIG00000017276)	ENY2 (ENSPTIG00000017293)	PKHD1L1 (ENSPTIG00000017317)	EBAG9 (ENSPTIG00000017386)	SYBU (ENSPTIG00000017395)	KCNV1 (ENSPTIG00000017407)	CSMD3 (ENSPTIG00000017466)
Cat	MODERN SPECIES	249	RRM2B (ENSFCAG00000028214)	UBR5 (ENSFCAG00000011214)	ODF1 (ENSFCAG00000042534)	KLF10 (ENSFCAG00000026958)	AZIN1 (ENSFCAG00000010031)	ATP6V1C1 (ENSFCAG00000005022)	BAALC (ENSFCAG00000040797)	FZD6 (ENSFCAG00000005027)	CTHRC1 (ENSFCAG00000005030)	SLC25A32 (ENSFCAG00000005032)	DCAF13 (ENSFCAG00000027256)	RIMS2 (ENSFCAG00000027891)	DCSTAMP (ENSFCAG00000008982)	DPYS (ENSFCAG00000008985)	LRP12 (ENSFCAG00000042764)	ZFPM2 (ENSFCAG00000009078) ##22	OXR1 (ENSFCAG00000031132)	ENSFCAG00000042579	ABRA (ENSFCAG00000036061)	ANGPT1 (ENSFCAG00000045651)	RSPO2 (ENSFCAG00000005782)	EIF3E (ENSFCAG00000003665)	EMC2 (ENSFCAG00000025332)	TMEM74 (ENSFCAG00000022184)	TRHR (ENSFCAG00000010358) ##23	NUDCD1 (ENSFCAG00000008501)	ENY2 (ENSFCAG00000030489)	PKHD1L1 (ENSFCAG00000023829)	EBAG9 (ENSFCAG00000025490)	SYBU (ENSFCAG00000031166)	KCNV1 (ENSFCAG00000024822)
Laurasiatheria_c	ANCESTRAL SPECIES	19	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Chiroptera	ANCESTRAL SPECIES	27	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Microchiroptera	ANCESTRAL SPECIES	27	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Greater horseshoe bat	MODERN SPECIES	5	UBR5 (ENSRFEG00010019728)	ODF1 (ENSRFEG00010019798)	KLF10 (ENSRFEG00010019834)	ENSRFEG00010019866	ATP6V1C1 (ENSRFEG00010019958)	BAALC (ENSRFEG00010020012)	FZD6 (ENSRFEG00010020069)	CTHRC1 (ENSRFEG00010020112)	ENSRFEG00010020145	DCAF13 (ENSRFEG00010020165)	RIMS2 (ENSRFEG00010020235)	ENSRFEG00010020511	DPYS (ENSRFEG00010005377)	LRP12 (ENSRFEG00010005421)	ENSRFEG00010005462	ZFPM2 (ENSRFEG00010005484) ##22	ENSRFEG00010005511	OXR1 (ENSRFEG00010005635)	ABRA (ENSRFEG00010005817)	ANGPT1 (ENSRFEG00010005849)	RSPO2 (ENSRFEG00010005888)	EIF3E (ENSRFEG00010005921)	ENSRFEG00010005975	EMC2 (ENSRFEG00010006025)	TMEM74 (ENSRFEG00010006096)	TRHR (ENSRFEG00010006111) ##23	NUDCD1 (ENSRFEG00010006147)	ENY2 (ENSRFEG00010006226)	ENSRFEG00010007785	SYBU (ENSRFEG00010007878)	KCNV1 (ENSRFEG00010008190)
Microbat	MODERN SPECIES	1051	UBR5 (ENSMLUG00000008052)	ODF1 (ENSMLUG00000011639)	KLF10 (ENSMLUG00000012969)	AZIN1 (ENSMLUG00000001688)	ATP6V1C1 (ENSMLUG00000003252)	ENSMLUG00000024773	FZD6 (ENSMLUG00000000258)	ENSMLUG00000000262	SLC25A32 (ENSMLUG00000007363)	DCAF13 (ENSMLUG00000007375)	RIMS2 (ENSMLUG00000007311)	DCSTAMP (ENSMLUG00000004396)	DPYS (ENSMLUG00000004400)	LRP12 (ENSMLUG00000016148)	ENSMLUG00000023196	ZFPM2 (ENSMLUG00000010148) ##22	ENSMLUG00000024682	OXR1 (ENSMLUG00000015189)	ABRA (ENSMLUG00000015207)	ANGPT1 (ENSMLUG00000002589)	ENSMLUG00000022747	RSPO2 (ENSMLUG00000006531)
Megabat	MODERN SPECIES	2185																ZFPM2 (ENSPVAG00000016508) ##22
Equus	ANCESTRAL SPECIES	14	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01090000263371	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740
Donkey	MODERN SPECIES	3	LRRC24 (ENSEASG00005038151)	ARHGAP39 (ENSEASG00005010971)	ENSEASG00005033061	ENSEASG00005010972	ENSEASG00005030159	ENSEASG00005025140	ENSEASG00005010974	ENSEASG00005010976	ENSEASG00005010978	ENSEASG00005037752	ENSEASG00005010981	ENSEASG00005010983	ENSEASG00005010984	ENSEASG00005025868	ENSEASG00005025519	ENSEASG00005001158 ##22	OXR1 (ENSEASG00005001125)	ABRA (ENSEASG00005032531)	ANGPT1 (ENSEASG00005001005)	RSPO2 (ENSEASG00005000997)	ENSEASG00005028835	ENSEASG00005000253	EMC2 (ENSEASG00005000221)	TMEM74 (ENSEASG00005027020)	ENSEASG00005035655	TRHR (ENSEASG00005000145) ##23	NUDCD1 (ENSEASG00005000131)	ENY2 (ENSEASG00005035771)	PKHD1L1 (ENSEASG00005023196)	EBAG9 (ENSEASG00005023183)	SYBU (ENSEASG00005023182)
Horse	MODERN SPECIES	30	UBR5 (ENSECAG00000015755)	ODF1 (ENSECAG00000028435)	KLF10 (ENSECAG00000013153)	AZIN1 (ENSECAG00000016922)	ENSECAG00000005314	ATP6V1C1 (ENSECAG00000024964)	BAALC (ENSECAG00000059356)	FZD6 (ENSECAG00000014710)	CTHRC1 (ENSECAG00000020399)	SLC25A32 (ENSECAG00000022060)	DCAF13 (ENSECAG00000009654)	RIMS2 (ENSECAG00000023008)	DCSTAMP (ENSECAG00000019191)	DPYS (ENSECAG00000020271)	LRP12 (ENSECAG00000016556)	ZFPM2 (ENSECAG00000020172) ##22	ENSECAG00000046713	ENSECAG00000047489	ENSECAG00000042569	OXR1 (ENSECAG00000022434)	ABRA (ENSECAG00000015998)	ANGPT1 (ENSECAG00000016669)	RSPO2 (ENSECAG00000024853)	EIF3E (ENSECAG00000000236)	EMC2 (ENSECAG00000010199)	ENSECAG00000035460	TMEM74 (ENSECAG00000005498)	ENSECAG00000030538	TRHR (ENSECAG00000023156) ##23	NUDCD1 (ENSECAG00000023445)	ENY2 (ENSECAG00000023565)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00530000063823.b.b ##22
Hedgehog	MODERN SPECIES	6504																ZFPM2 (ENSEEUG00000009933) ##22
Common shrew	MODERN SPECIES	5063																ZFPM2 (ENSSARG00000009246) ##22
Atlantogenata	ANCESTRAL SPECIES	20	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Afrotheria	ANCESTRAL SPECIES	10	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Tenrec	MODERN SPECIES	6324																ZFPM2 (ENSETEG00000002635) ##22
Afrotheria_a	ANCESTRAL SPECIES	10	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Hyrax	MODERN SPECIES	5337																ZFPM2 (ENSPCAG00000013055) ##22
Elephant	MODERN SPECIES	567	ODF1 (ENSLAFG00000006099)	KLF10 (ENSLAFG00000000037)	AZIN1 (ENSLAFG00000009535)	ATP6V1C1 (ENSLAFG00000011909)	FZD6 (ENSLAFG00000003355)	CTHRC1 (ENSLAFG00000006121)	SLC25A32 (ENSLAFG00000006098)	DCAF13 (ENSLAFG00000009807)	ENSLAFG00000029789	ENSLAFG00000009814	ENSLAFG00000030980	ENSLAFG00000029709	DCSTAMP (ENSLAFG00000000405)	DPYS (ENSLAFG00000000406)	LRP12 (ENSLAFG00000008324)	ZFPM2 (ENSLAFG00000010342) ##22	ENSLAFG00000028358	OXR1 (ENSLAFG00000007358)	ABRA (ENSLAFG00000007362)	ANGPT1 (ENSLAFG00000007240)	RSPO2 (ENSLAFG00000018743)	EIF3E (ENSLAFG00000004294)	EMC2 (ENSLAFG00000000346)	TMEM74 (ENSLAFG00000002870)	TRHR (ENSLAFG00000006875) ##23	NUDCD1 (ENSLAFG00000013430)	ENY2 (ENSLAFG00000003282)	PKHD1L1 (ENSLAFG00000007823)	EBAG9 (ENSLAFG00000007842)	SYBU (ENSLAFG00000007844)	KCNV1 (ENSLAFG00000009264)
Xenarthra	ANCESTRAL SPECIES	96						ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a
Sloth	MODERN SPECIES	5793																ZFPM2 (ENSCHOG00000010127) ##22
Armadillo	MODERN SPECIES	1466				ATP6V1C1 (ENSDNOG00000036633)	ENSDNOG00000010733	FZD6 (ENSDNOG00000030798)	CTHRC1 (ENSDNOG00000036937)	SLC25A32 (ENSDNOG00000040672)	DCAF13 (ENSDNOG00000044885)	RIMS2 (ENSDNOG00000010842)	DCSTAMP (ENSDNOG00000035488)	DPYS (ENSDNOG00000020001)	ENSDNOG00000014805	LRP12 (ENSDNOG00000020002)	ENSDNOG00000040533	ZFPM2 (ENSDNOG00000045385) ##22	ENSDNOG00000047338	OXR1 (ENSDNOG00000019921)	ABRA (ENSDNOG00000045203)	ANGPT1 (ENSDNOG00000002345)	ENSDNOG00000032756	ENSDNOG00000042997	ENSDNOG00000046953	RSPO2 (ENSDNOG00000034163)	ENSDNOG00000011854	EMC2 (ENSDNOG00000013708)	TMEM74 (ENSDNOG00000043766)	TRHR (ENSDNOG00000011914) ##23	ENSDNOG00000046729	NUDCD1 (ENSDNOG00000017517)	ENY2 (ENSDNOG00000034317)
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a.k	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145.w	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a.k	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145.w	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Diprotodontia	ANCESTRAL SPECIES	36	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a.k	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145.w	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Diprotodontia_a	ANCESTRAL SPECIES	35	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a.k	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145.w	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a.p	ENSGT00940000158307	ENSGT00390000016016.A.b	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.v	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
koala	MODERN SPECIES	7	ENSPCIG00000036257	KLF10 (ENSPCIG00000025820)	AZIN1 (ENSPCIG00000025816)	ENSPCIG00000025815	ENSPCIG00000025814	FZD6 (ENSPCIG00000026190)	CTHRC1 (ENSPCIG00000026188)	SLC25A32 (ENSPCIG00000026187)	DCAF13 (ENSPCIG00000026186)	RIMS2 (ENSPCIG00000025283)	DCSTAMP (ENSPCIG00000015368)	DPYS (ENSPCIG00000015361)	LRP12 (ENSPCIG00000015354)	ENSPCIG00000015352	ENSPCIG00000016020	ZFPM2 (ENSPCIG00000015553) ##22	ENSPCIG00000015504	ENSPCIG00000011766	OXR1 (ENSPCIG00000011756)	ABRA (ENSPCIG00000037467)	ENSPCIG00000011751	ANGPT1 (ENSPCIG00000013533)	RSPO2 (ENSPCIG00000013528)	ENSPCIG00000031770	EMC2 (ENSPCIG00000013521)	TMEM74 (ENSPCIG00000025339)	TRHR (ENSPCIG00000025338) ##23	NUDCD1 (ENSPCIG00000025328)	ENY2 (ENSPCIG00000025325)	PKHD1L1 (ENSPCIG00000025284)	ENSPCIG00000025280
Common wonbat	MODERN SPECIES	569	ENSVURG00010007234	AZIN1 (ENSVURG00010007242)	ATP6V1C1 (ENSVURG00010007262)	ENSVURG00010007275	ENSVURG00010007277	FZD6 (ENSVURG00010007284)	CTHRC1 (ENSVURG00010007292)	ENSVURG00010007308	DCAF13 (ENSVURG00010007325)	RIMS2 (ENSVURG00010007405)	ENSVURG00010007932	DCSTAMP (ENSVURG00010007941)	ENSVURG00010007949	LRP12 (ENSVURG00010007966)	ENSVURG00010007980	ZFPM2 (ENSVURG00010007996) ##22	OXR1 (ENSVURG00010008050)	ENSVURG00010008203	ABRA (ENSVURG00010008209)	ANGPT1 (ENSVURG00010008222)	ENSVURG00010008240	RSPO2 (ENSVURG00010008253)	ENSVURG00010008281	ENSVURG00010008301	EMC2 (ENSVURG00010008312)	TMEM74 (ENSVURG00010008331)
Wallaby	MODERN SPECIES	7841																ENSMEUG00000010666 ##22
Tasmanian devil	MODERN SPECIES		RRM2B (ENSSHAG00000017628)	UBR5 (ENSSHAG00000017701)	ENSSHAG00000029341	ENSSHAG00000028599	KLF10 (ENSSHAG00000018290)	AZIN1 (ENSSHAG00000018535)	ENSSHAG00000018681	FZD6 (ENSSHAG00000004429)	CTHRC1 (ENSSHAG00000005852)	ENSSHAG00000006270	DCAF13 (ENSSHAG00000006588)	RIMS2 (ENSSHAG00000006282)	DCSTAMP (ENSSHAG00000012225)	DPYS (ENSSHAG00000012732)	LRP12 (ENSSHAG00000013457)	ZFPM2 (ENSSHAG00000016982) ##22	OXR1 (ENSSHAG00000023291)	ABRA (ENSSHAG00000018659)	ANGPT1 (ENSSHAG00000027244)	RSPO2 (ENSSHAG00000011160)	EIF3E (ENSSHAG00000013132)	EMC2 (ENSSHAG00000014174)	TMEM74 (ENSSHAG00000015777)	TRHR (ENSSHAG00000000954) ##23	NUDCD1 (ENSSHAG00000025681)	ENSSHAG00000029065	ENSSHAG00000026682	PKHD1L1 (ENSSHAG00000003094)	EBAG9 (ENSSHAG00000025825)	SYBU (ENSSHAG00000028118)	ENSSHAG00000009572
Opossum	MODERN SPECIES	2	UBR5 (ENSMODG00000005976)	ODF1 (ENSMODG00000005901)	KLF10 (ENSMODG00000005896)	AZIN1 (ENSMODG00000005864)	ENSMODG00000005676	ENSMODG00000005631	ENSMODG00000024503	FZD6 (ENSMODG00000005621)	CTHRC1 (ENSMODG00000047113)	ENSMODG00000005569	DCAF13 (ENSMODG00000005549)	RIMS2 (ENSMODG00000005498)	DCSTAMP (ENSMODG00000005447)	DPYS (ENSMODG00000005434)	LRP12 (ENSMODG00000005408)	ZFPM2 (ENSMODG00000005359) ##22	OXR1 (ENSMODG00000005343)	ABRA (ENSMODG00000045810)	ANGPT1 (ENSMODG00000005283)	RSPO2 (ENSMODG00000005246)	ENSMODG00000005232	EMC2 (ENSMODG00000004954)	ENSMODG00000043711	ENSMODG00000037740	TMEM74 (ENSMODG00000004939)	ENSMODG00000024488	TRHR (ENSMODG00000004935) ##23	NUDCD1 (ENSMODG00000004926)	PKHD1L1 (ENSMODG00000004891)	ENSMODG00000004795	SYBU (ENSMODG00000004746)
Platypus	MODERN SPECIES	15	RRM2B (ENSOANG00000001870)	UBR5 (ENSOANG00000013340)	ODF1 (ENSOANG00000046954)	KLF10 (ENSOANG00000013800)	AZIN1 (ENSOANG00000013638)	ATP6V1C1 (ENSOANG00000012807)	BAALC (ENSOANG00000044631)	FZD6 (ENSOANG00000008078)	CTHRC1 (ENSOANG00000047991)	ENSOANG00000040979	DCAF13 (ENSOANG00000043698)	RIMS2 (ENSOANG00000013258)	DCSTAMP (ENSOANG00000008852)	DPYS (ENSOANG00000020381)	LRP12 (ENSOANG00000007212)	ZFPM2 (ENSOANG00000011618) ##22	OXR1 (ENSOANG00000008345)	ABRA (ENSOANG00000008344)	ANGPT1 (ENSOANG00000008342)	RSPO2 (ENSOANG00000036555)	EIF3E (ENSOANG00000002269)	EMC2 (ENSOANG00000043750)	TMEM74 (ENSOANG00000043458)	TRHR (ENSOANG00000008318) ##23	NUDCD1 (ENSOANG00000008096)	ENY2 (ENSOANG00000008097)	PKHD1L1 (ENSOANG00000008098)	EBAG9 (ENSOANG00000007368)	SYBU (ENSOANG00000007367)	KCNV1 (ENSOANG00000008841)	CSMD3 (ENSOANG00000009560)
Anura	ANCESTRAL SPECIES	10	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711	ENSGT00940000155236	ENSGT00940000153269.b.b	ENSGT01030000234527.A.a.a.a	ENSGT00940000158307	ENSGT00530000063823.b.b ##22	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b ##23	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b
Frog	MODERN SPECIES	6	baalc (ENSXETG00000041284)	fzd6 (ENSXETG00000004106)	cthrc1 (ENSXETG00000004104)	ENSXETG00000037722	ENSXETG00000035324	ENSXETG00000035063	ENSXETG00000036229	slc25a32 (ENSXETG00000004096)	dcaf13 (ENSXETG00000004092)	rims2 (ENSXETG00000004073)	ENSXETG00000042137	DCSTAMP (ENSXETG00000004069)	dpys (ENSXETG00000048506)	lrp12 (ENSXETG00000004065)	ENSXETG00000043973	zfpm2 (ENSXETG00000006505) ##22	ENSXETG00000048990	ENSXETG00000044897	oxr1 (ENSXETG00000006499)	abra (ENSXETG00000006498)	ENSXETG00000038532	angpt1 (ENSXETG00000003598)	rspo2 (ENSXETG00000003600)	eif3e (ENSXETG00000003602)	emc2 (ENSXETG00000003604)	tmem74 (ENSXETG00000027485)	trhr (ENSXETG00000010499) ##23	nudcd1 (ENSXETG00000010497)	eny2 (ENSXETG00000027483)	pkhd1l1.1 (ENSXETG00000042385)	ENSXETG00000042449
Leishan spiny toad	MODERN SPECIES	8	UBR5 (ENSLLEG00000023145)	KLF10 (ENSLLEG00000024337)	ENSLLEG00000024365	ENSLLEG00000024399	ATP6V1C1 (ENSLLEG00000024443)	ENSLLEG00000024893	FZD6 (ENSLLEG00000005839)	CTHRC1 (ENSLLEG00000005889)	SLC25A32 (ENSLLEG00000005933)	DCAF13 (ENSLLEG00000006016)	RIMS2 (ENSLLEG00000006297)	DCSTAMP (ENSLLEG00000008220)	DPYS (ENSLLEG00000008262)	LRP12 (ENSLLEG00000008379)	ENSLLEG00000008436	ZFPM2 (ENSLLEG00000008471) ##22	ENSLLEG00000008536	ENSLLEG00000008622	ABRA (ENSLLEG00000009001)	ANGPT1 (ENSLLEG00000009052)	ENSLLEG00000009146	ENSLLEG00000009184	ENSLLEG00000009583	ENSLLEG00000009611	RSPO2 (ENSLLEG00000009655)	ENSLLEG00000009865	ENSLLEG00000009842	EIF3E (ENSLLEG00000009926)	EMC2 (ENSLLEG00000010245)	NIPAL2 (ENSLLEG00000010579)	POP1 (ENSLLEG00000010973)
Coelacanth	MODERN SPECIES	985																ZFPM2 (ENSLACG00000000296) ##22	ENSLACG00000009740	OXR1 (ENSLACG00000012366)	ABRA (ENSLACG00000013990)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000063823.a ##22
Cyclostomata	ANCESTRAL SPECIES	1238																ENSGT00530000063823.a ##22	ENSGT00940000158307
Lamprey	MODERN SPECIES	3324															ENSPMAG00000008598	ENSPMAG00000008594 ##22	ENSPMAG00000008591
Hagfish	MODERN SPECIES	1016													cbln1 (ENSEBUG00000004966)	ENSEBUG00000016243	ENSEBUG00000016590	ENSEBUG00000007949 ##22	ENSEBUG00000000596	ENSEBUG00000012531	lars2 (ENSEBUG00000005332)	ENSEBUG00000006068	exosc7 (ENSEBUG00000001206)	ENSEBUG00000003270	ENSEBUG00000004793	trappc2l (ENSEBUG00000015035) #35	pabpn1 (ENSEBUG00000002322)	galns (ENSEBUG00000004140) #34	ENSEBUG00000011755	ENSEBUG00000009417	ENSEBUG00000013215	ENSEBUG00000007061	zfhx3b (ENSEBUG00000002737)