Theria	ANCESTRAL SPECIES	27				ENSGT01100000263479.A ##11	ENSGT00730000111056 #12	ENSGT00990000204044	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00960000189159	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a	ENSGT00530000063351.b	ENSGT00940000153599.B.a #10	ENSGT00940000160803 #9	ENSGT00940000159046.C #8
Eutheria	ANCESTRAL SPECIES	29		ENSGT00530000063351.a.a	ENSGT01100000263479.D.a #11	ENSGT00390000002861	ENSGT00730000111056 #12	ENSGT00990000204044	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT00530000063351.b	ENSGT00940000153599.B.a #10	ENSGT00940000160803 #9	ENSGT00940000159046.C #8
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00730000111056 #12	ENSGT00990000204044	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT01100000263479.D.a #11	ENSGT00530000063351.a.a	ENSGT00530000063351.b	ENSGT00940000164580
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.d ##11	ENSGT01100000263479.F ##11	ENSGT00730000111056 #12	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT01100000263479.D.a.c.b #11	ENSGT01100000263479.H ##11	ENSGT00990000204044	ENSGT00940000171483
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b #11	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #12	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT00530000063351.a.a.z	ENSGT00530000063351.b	ENSGT00940000164580	ENSGT00940000153599.B.a #10
Glires	ANCESTRAL SPECIES	6	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b #11	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #12	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT00530000063351.a.a.z	ENSGT00530000063351.b	ENSGT00940000164580	ENSGT00940000153599.B.a #10
Rodentia	ANCESTRAL SPECIES	8	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b #11	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056 #12	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT01100000263479.D.a.c.b.b ##11	ENSGT00530000063351.a.a.z	ENSGT00530000063351.b	ENSGT00940000153599.B.a #10
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b #11	ENSGT01100000263479.D.a.c.b.a.a ##11	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056 #12	ENSGT00940000161202.b #13	ENSGT00940000160262 #14	ENSGT00940000153981.B #15	ENSGT00390000010703 #16	ENSGT00950000183199.a.b #17	ENSGT00940000159960 #18	ENSGT00940000157292 #19	ENSGT00520000055635.c.b #20	ENSGT00940000162624 #21	ENSGT00390000008714.b #22	ENSGT00940000160115 #23	ENSGT00940000161799 #24	ENSGT00940000158852 #25	ENSGT00940000160476 #26	ENSGT00390000010549 #27	ENSGT00940000163212.A #28	ENSGT00940000161180 #29	ENSGT00940000154363.A #30	ENSGT00390000013102.f ##31	ENSGT00940000161904 #32	ENSGT00530000063351.a.b	ENSGT00530000063351.a.a.z	ENSGT01100000263479.A ##11	ENSGT00530000063351.a.a.y	ENSGT00530000063351.b
Kangaroo rat	MODERN SPECIES	475	Xrcc1 (ENSDORG00000006108) #7	Ethe1 (ENSDORG00000002169) #8	Phldb3 (ENSDORG00000002164) #9	Lypd3 (ENSDORG00000010164) #10	ENSDORG00000006243 #11	Lipe (ENSDORG00000007951) #12	Cnfn (ENSDORG00000007950) #13	Megf8 (ENSDORG00000007946) #14	Tmem145 (ENSDORG00000007941) #15	Prr19 (ENSDORG00000007940) #16	Pafah1b3 (ENSDORG00000008817) #17	Cic (ENSDORG00000008822) #18	Erf (ENSDORG00000008823) #19	Gsk3a (ENSDORG00000008826) #20	Zfp526 (ENSDORG00000024798) #21	Dedd2 (ENSDORG00000026250) #22	Pou2f2 (ENSDORG00000025719) #23	Zfp574 (ENSDORG00000009702) #24	Grik5 (ENSDORG00000013438) #25	Atp1a3 (ENSDORG00000006771) #26	Rabac1 (ENSDORG00000006773) #27	Erfl (ENSDORG00000024424) #28	Arhgef1 (ENSDORG00000010815) #29	Cd79a (ENSDORG00000010814) #30	ENSDORG00000010812 #31	Dmrtc2 (ENSDORG00000010810) #32	ENSDORG00000026563 #33	Ttc9b (ENSDORG00000023658) #34	Akt2 (ENSDORG00000003591) #35	2310022A10Rik (ENSDORG00000012625) #36	Pld3 (ENSDORG00000011428) #37