Bovidae ANCESTRAL SPECIES 16 ENSGT00390000008184 ENSGT00390000016292.i.b ENSGT00950000183093.B #8 ENSGT00940000155663 #9 ENSGT00940000158651 #10 ENSGT00940000159533 #12 ENSGT00530000063074.b.a #13 ENSGT01030000234639.A.b.a.b.a.b.b #14 ENSGT00940000159916 #15 ENSGT00390000007101.d.b #16 ENSGT00940000154133.A #17 ENSGT01050000248204 ENSGT01100000266516 #18 ENSGT01050000245084 #19 ENSGT00940000153903.a.b.b #20 ENSGT00940000153903.a.a.k.b #22 ENSGT00940000161479 #23 ENSGT00940000153201.j.u #24 ENSGT00390000015066 #25 ENSGT00940000155818 #26 ENSGT00390000004737.b.a.o.a.a.a.a.o #29 ENSGT00390000004737.b.a.o.a.b #30 ENSGT00390000004737.b.a.o.a.a.a.a.p.b #31 ENSGT01090000260086.B.a.a.c.a.a #32 ENSGT01090000260086.B.a.a.c.a.b #33 ENSGT01090000260086.B.a.a.d #34 ENSGT01090000260086.B.a.b #35 ENSGT01040000240383.b.a.b #36 ENSGT00940000163057 #37 ENSGT01090000260086.A.c.a.a ##35 ENSGT01010000222320.a.a.a.a.b.f.a Caprinae ANCESTRAL SPECIES 29 ENSGT00390000008184 ENSGT00390000016292.i.b ENSGT00940000163089.b.x.b.b ENSGT00950000183093.B #8 ENSGT00940000155663 #9 ENSGT00940000158651 #10 ENSGT00940000159533 #12 ENSGT00530000063074.b.a #13 ENSGT01030000234639.A.b.a.b.a.b.b #14 ENSGT00940000159916 #15 ENSGT00390000007101.d.b #16 ENSGT00940000154133.A #17 ENSGT01100000266516 #18 ENSGT01050000245084 #19 ENSGT00940000153903.a.b.b #20 ENSGT00940000153903.a.a.k.b #22 ENSGT00940000161479 #23 ENSGT00940000153201.j.u #24 ENSGT00390000015066 #25 ENSGT00940000155818 #26 ENSGT00390000004737.b.a.o.a.a.a.a.p.b.e #31 ENSGT00390000004737.b.a.o.a.a.a.a.p.a #28 ENSGT00390000004737.b.a.o.a.a.a.a.o #29 ENSGT00390000004737.b.a.o.a.b #30 ENSGT00390000004737.b.a.o.a.a.a.a.p.b.f ##31 ENSGT01090000260086.B.a.a.c.a.a #32 ENSGT01090000260086.B.a.a.c.a.b #33 ENSGT01090000260086.B.a.a.d #34 ENSGT01090000260086.B.a.b #35 ENSGT01040000240383.b.a.b #36 ENSGT00940000163057 #37 Rambouillet Sheep MODERN SPECIES 13 ENSOARG00020025682 #7 DBX1 (ENSOARG00020025685) #8 NAV2 (ENSOARG00020025736) #9 E2F8 (ENSOARG00020025926) #10 ENSOARG00020025934 #11 CSRP3 (ENSOARG00020025944) #12 ZDHHC13 (ENSOARG00020025951) #13 ENSOARG00020025964 #14 PTPN5 (ENSOARG00020025965) #15 TMEM86A (ENSOARG00020025974) #16 SPTY2D1 (ENSOARG00020025977) #17 ENSOARG00020025980 #18 ENSOARG00020025982 #19 UEVLD (ENSOARG00020026000) #20 ENSOARG00020026044 #21 TSG101 (ENSOARG00020026047) #22 ENSOARG00020026053 #23 LDHA (ENSOARG00020026056) #24 GTF2H1 (ENSOARG00020026060) #25 HPS5 (ENSOARG00020026065) #26 ENSOARG00020026068 #27 ENSOARG00020026070 #28 ENSOARG00020026073 #29 ENSOARG00020026078 #30 ENSOARG00020026082 #31 ENSOARG00020026085 #32 ENSOARG00020026088 #33 ENSOARG00020026089 #34 ENSOARG00020012600 #35 OR8D4 (ENSOARG00020012620) #36 OR4D5 (ENSOARG00020012654) #37 Goat MODERN SPECIES 21 HTATIP2 (ENSCHIG00000024838) ENSCHIG00000015616 ENSCHIG00000007650 DBX1 (ENSCHIG00000023301) #8 NAV2 (ENSCHIG00000000920) #9 E2F8 (ENSCHIG00000023407) #10 CSRP3 (ENSCHIG00000023005) #12 ZDHHC13 (ENSCHIG00000024992) #13 ENSCHIG00000020480 #14 PTPN5 (ENSCHIG00000008345) #15 TMEM86A (ENSCHIG00000020591) #16 SPTY2D1 (ENSCHIG00000020220) #17 MISFA (ENSCHIG00000005517) #19 ENSCHIG00000024305 ENSCHIG00000024712 ENSCHIG00000013413 #22 LDHC (ENSCHIG00000013476) #23 LDH-A (ENSCHIG00000018372) #24 GTF2H1 (ENSCHIG00000014725) #25 HPS5 (ENSCHIG00000009350) #26 ENSCHIG00000022162 #31 ENSCHIG00000016791 #28 ENSCHIG00000022653 #29 SAA4 (ENSCHIG00000023600) #30 ENSCHIG00000012548 ##31 ENSCHIG00000020533 #32 ENSCHIG00000003817 #33 ENSCHIG00000019742 #34 ENSCHIG00000007311 #35 OR8D4 (ENSCHIG00000008168) #36 OR4D5 (ENSCHIG00000022238) #37 Bovinae DUPLICATION Bovinae DUPLICATION Bovinae ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.a.a #22 American bison MODERN SPECIES 3103 H2AC6 (ENSBBBG00000006761) ENSBBBG00000007868 H1-6 (ENSBBBG00000025458) ENSBBBG00000008266 HFE (ENSBBBG00000025427) H1-2 (ENSBBBG00000025348) ENSBBBG00000025339 ENSBBBG00000025330 ENSBBBG00000025323 ENSBBBG00000025318 ENSBBBG00000006706 ENSBBBG00000025309 ENSBBBG00000025303 H1-1 (ENSBBBG00000007772) TRIM38 (ENSBBBG00000025295) ENSBBBG00000025278 #22 SLC17A2 (ENSBBBG00000025265) SLC17A3 (ENSBBBG00000006673) SLC17A1 (ENSBBBG00000007749) SLC17A4 (ENSBBBG00000008071) ENSBBBG00000008238 H2BC1 (ENSBBBG00000024995) SCGN (ENSBBBG00000024988) CARMIL1 (ENSBBBG00000024962) ENSBBBG00000024875 RIPOR2 (ENSBBBG00000024682) ARMH2 (ENSBBBG00000024330) GMNN (ENSBBBG00000008707) C6orf62 (ENSBBBG00000024286) ACOT13 (ENSBBBG00000000283) TDP2 (ENSBBBG00000024232) Bovinae DUPLICATION Bovinae ANCESTRAL SPECIES 27 ENSGT00940000154963 ENSGT00940000156825 ENSGT00390000008184 ENSGT00390000016292.i.b ENSGT00950000183093.B #8 ENSGT00940000155663 #9 ENSGT00940000158651 #10 ENSGT00940000159533 #12 ENSGT00530000063074.b.a #13 ENSGT01030000234639.A.b.a.b.a.b.b #14 ENSGT00940000159916 #15 ENSGT00390000007101.d.b #16 ENSGT00940000154133.A #17 ENSGT01050000245084 #19 ENSGT00940000153903.a.b.b #20 ENSGT00940000153903.a.a.k.b.a.b.a #22 ENSGT00940000161479 #23 ENSGT00940000153201.j.u.i.b #24 ENSGT00390000015066 #25 ENSGT00940000155818 #26 ENSGT00390000004737.b.a.o.a.a.a.a.p.b #31 ENSGT00390000004737.b.a.o.a.a.a.a.o.b #29 ENSGT00390000004737.b.a.o.a.a.a.a.o.a #29 ENSGT00390000004737.b.a.o.a.b #30 ENSGT01090000260086.B.a.a.c.a.a #32 ENSGT01090000260086.B.a.a.c.a.b #33 ENSGT01090000260086.B.a.a.d #34 ENSGT01090000260086.B.a.b #35 ENSGT01040000240383.b.a.b #36 ENSGT00940000163057 #37 ENSGT01010000222320.a.a.a.a.b.f.a Bos ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.a.b.a #22 Bos_b ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.a.b.a #22 Hybrid Bos Indicus MODERN SPECIES 21 ENSBIXG00005022254 HTATIP2 (ENSBIXG00005022339) DBX1 (ENSBIXG00005022387) #8 ENSBIXG00005022396 ENSBIXG00005007225 NAV2 (ENSBIXG00005023131) #9 E2F8 (ENSBIXG00005023306) #10 CSRP3 (ENSBIXG00005023367) #12 ZDHHC13 (ENSBIXG00005023459) #13 ENSBIXG00005023495 #14 PTPN5 (ENSBIXG00005023528) #15 TMEM86A (ENSBIXG00005004037) #16 SPTY2D1 (ENSBIXG00005023655) #17 ENSBIXG00005023672 UEVLD (ENSBIXG00005007235) #20 ENSBIXG00005007624 #22 LDHC (ENSBIXG00005023917) #23 ENSBIXG00005024064 #24 GTF2H1 (ENSBIXG00005004134) #25 HPS5 (ENSBIXG00005024315) #26 ENSBIXG00005004162 #29 ENSBIXG00005024453 #30 ENSBIXG00005004178 #32 ENSBIXG00005024490 #33 ENSBIXG00005004182 #34 ENSBIXG00005024511 #35 OR8D4 (ENSBIXG00005024533) #36 ENSBIXG00005024579 OR10S1 (ENSBIXG00005024588) OR10G6 (ENSBIXG00005024593) ENSBIXG00005024601 American bison MODERN SPECIES 3302 HTATIP2 (ENSBBBG00000013427) ENSBBBG00000013401 DBX1 (ENSBBBG00000013393) #8 NAV2 (ENSBBBG00000001584) #9 ENSBBBG00000001687 E2F8 (ENSBBBG00000013084) #10 CSRP3 (ENSBBBG00000013070) #12 ZDHHC13 (ENSBBBG00000013052) #13 ENSBBBG00000013032 #14 PTPN5 (ENSBBBG00000013029) #15 TMEM86A (ENSBBBG00000002600) #16 SPTY2D1 (ENSBBBG00000013009) #17 ENSBBBG00000012981 MISFA (ENSBBBG00000012977) #19 UEVLD (ENSBBBG00000012967) #20 ENSBBBG00000002528 #22 LDHC (ENSBBBG00000012846) #23 ENSBBBG00000001786 #24 GTF2H1 (ENSBBBG00000002487) #25 HPS5 (ENSBBBG00000007648) #26 ENSBBBG00000012737 #31 ENSBBBG00000012698 #29 ENSBBBG00000012686 #29 SAA4 (ENSBBBG00000002439) #30 ENSBBBG00000012666 #34 ENSBBBG00000012663 #35 OR8D4 (ENSBBBG00000002436) #36 OR4D5 (ENSBBBG00000012653) #37 OR10S1 (ENSBBBG00000002433) OR10G6 (ENSBBBG00000002432) ENSBBBG00000012644 Bovinae ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.a.b.b #22 Bos ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.a.b.b #22 Bos_b ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.a.b.b #22 Hybrid Bos Indicus MODERN SPECIES 14 KLHDC8B (ENSBIXG00005011961) CCDC71 (ENSBIXG00005000414) ENSBIXG00005002536 LAMB2 (ENSBIXG00005016314) USP19 (ENSBIXG00005017369) QARS1 (ENSBIXG00005017449) QRICH1 (ENSBIXG00005017495) IMPDH2 (ENSBIXG00005002847) NDUFAF3 (ENSBIXG00005002855) DALRD3 (ENSBIXG00005017624) P4HTM (ENSBIXG00005002875) WDR6 (ENSBIXG00005017807) ARIH2 (ENSBIXG00005002897) ENSBIXG00005002903 ENSBIXG00005017902 ENSBIXG00005017935 #22 PRKAR2A (ENSBIXG00005018013) IP6K2 (ENSBIXG00005018059) NCKIPSD (ENSBIXG00005002932) CELSR3 (ENSBIXG00005018136) SLC26A6 (ENSBIXG00005018196) TMEM89 (ENSBIXG00005018210) ENSBIXG00005018217 UQCRC1 (ENSBIXG00005007288) UCN2 (ENSBIXG00005005662) ENSBIXG00005018733 PFKFB4 (ENSBIXG00005018806) ENSBIXG00005006874 SHISA5 (ENSBIXG00005018853) TREX1 (ENSBIXG00005018879) ATRIP (ENSBIXG00005003099) Bovinae ANCESTRAL SPECIES ENSGT00940000153903.a.a.k.b.b #22 Bos ANCESTRAL SPECIES 11 ENSGT00940000154963 ENSGT00940000156825 ENSGT00390000008184 ENSGT00390000016292.i.b ENSGT00950000183093.B #8 ENSGT00940000155663 #9 ENSGT00940000158651 #10 ENSGT00940000159533 #12 ENSGT00530000063074.b.a #13 ENSGT01030000234639.A.b.a.b.a.b.b #14 ENSGT00940000159916 #15 ENSGT00390000007101.d.b #16 ENSGT00940000154133.A #17 ENSGT01050000248204 ENSGT00940000153903.a.b.b #20 ENSGT00940000153903.a.a.k.b.b #22 ENSGT00940000161479 #23 ENSGT00940000153201.j.u.i.a #24 ENSGT00390000015066 #25 ENSGT00940000155818 #26 ENSGT00390000004737.b.a.o.a.a.a.a.p.b.d #31 ENSGT00390000004737.b.a.o.a.a.a.a.o.b #29 ENSGT00390000004737.b.a.o.a.a.a.a.o.a #29 ENSGT00390000004737.b.a.o.a.b #30 ENSGT00390000004737.b.a.o.a.a.a.a.p.b.c #31 ENSGT01090000260086.B.a.a.c.a.a #32 ENSGT01090000260086.B.a.a.c.a.b #33 ENSGT01090000260086.B.a.a.d #34 ENSGT01090000260086.B.a.b #35 ENSGT01040000240383.b.a.b #36 ENSGT00940000163057 #37 Bos_b ANCESTRAL SPECIES 10 ENSGT00940000154963 ENSGT00940000156825 ENSGT00390000008184 ENSGT00390000016292.i.b ENSGT00950000183093.B #8 ENSGT00940000155663 #9 ENSGT00940000158651 #10 ENSGT00940000159533 #12 ENSGT00530000063074.b.a #13 ENSGT01030000234639.A.b.a.b.a.b.b #14 ENSGT00940000159916 #15 ENSGT00390000007101.d.b #16 ENSGT00940000154133.A #17 ENSGT01050000248204 ENSGT00940000153903.a.b.b #20 ENSGT00940000153903.a.a.k.b.b #22 ENSGT00940000161479 #23 ENSGT00940000153201.j.u.i.a #24 ENSGT00390000015066 #25 ENSGT00940000155818 #26 ENSGT00390000004737.b.a.o.a.a.a.a.p.b.d #31 ENSGT00390000004737.b.a.o.a.a.a.a.o.b #29 ENSGT00390000004737.b.a.o.a.a.a.a.o.a #29 ENSGT00390000004737.b.a.o.a.b #30 ENSGT00390000004737.b.a.o.a.a.a.a.p.b.c #31 ENSGT01090000260086.B.a.a.c.a.a #32 ENSGT01090000260086.B.a.a.c.a.b #33 ENSGT01090000260086.B.a.a.d #34 ENSGT01090000260086.B.a.b #35 ENSGT01040000240383.b.a.b #36 ENSGT00940000163057 #37 Cow MODERN SPECIES 21 ENSBTAG00000048576 SLC6A5 (ENSBTAG00000014300) PRMT3 (ENSBTAG00000013421) HTATIP2 (ENSBTAG00000013419) ENSBTAG00000008684 DBX1 (ENSBTAG00000002733) #8 NAV2 (ENSBTAG00000018431) #9 E2F8 (ENSBTAG00000017446) #10 CSRP3 (ENSBTAG00000011869) #12 ZDHHC13 (ENSBTAG00000020642) #13 MRGPRX2 (ENSBTAG00000002245) #14 PTPN5 (ENSBTAG00000020257) #15 TMEM86A (ENSBTAG00000048059) #16 SPTY2D1 (ENSBTAG00000001660) #17 UEVLD (ENSBTAG00000013568) #20 TSG101 (ENSBTAG00000013563) #22 LDHC (ENSBTAG00000002488) #23 LDHA (ENSBTAG00000008683) #24 GTF2H1 (ENSBTAG00000005160) #25 HPS5 (ENSBTAG00000005147) #26 SAA3 (ENSBTAG00000049589) #31 ENSBTAG00000022395 #29 SAA2 (ENSBTAG00000022394) #29 SAA4 (ENSBTAG00000002963) #30 M-SAA3.2 (ENSBTAG00000054278) #31 OR6M2 (ENSBTAG00000040020) #32 OR6M2C (ENSBTAG00000052437) #33 OR6M7 (ENSBTAG00000037485) #34 OR8D4 (ENSBTAG00000038802) #36 OR4D5 (ENSBTAG00000006634) #37 OR8B72 (ENSBTAG00000049492) Bos_a ANCESTRAL SPECIES 106 ENSGT00940000158651 #10 ENSGT00940000159533 #12 ENSGT00530000063074.b.a #13 ENSGT01030000234639.A.b.a.b.a.b.b #14 ENSGT00940000159916 #15 ENSGT00390000007101.d.b #16 ENSGT00940000154133.A #17 ENSGT01100000266516 #18 ENSGT00940000153903.a.b.b #20 ENSGT00940000153903.a.a.k.b.b #22 ENSGT00940000161479 #23 ENSGT00940000153201.j.u.i.b #24 ENSGT00390000015066 #25 ENSGT00940000155818 #26 Wild yak MODERN SPECIES 1200 E2F8 (ENSBMUG00000021434) #10 CSRP3 (ENSBMUG00000021458) #12 ZDHHC13 (ENSBMUG00000021491) #13 ENSBMUG00000021522 #14 PTPN5 (ENSBMUG00000021545) #15 TMEM86A (ENSBMUG00000021555) #16 SPTY2D1 (ENSBMUG00000021567) #17 ENSBMUG00000021575 #18 UEVLD (ENSBMUG00000021628) #20 TSG101 (ENSBMUG00000021667) #22 ENSBMUG00000021687 #23 ENSBMUG00000021774 #24 GTF2H1 (ENSBMUG00000021811) #25 HPS5 (ENSBMUG00000021851) #26 ENSBMUG00000021888 #31 Domestic yak MODERN SPECIES 16 H2AC6 (ENSBGRG00000016006) ENSBGRG00000015917 ENSBGRG00000015895 HFE (ENSBGRG00000015583) H1-2 (ENSBGRG00000015537) ENSBGRG00000015501 ENSBGRG00000015470 H2BC3 (ENSBGRG00000015451) H2AC4 (ENSBGRG00000015427) ENSBGRG00000015411 ENSBGRG00000015388 ENSBGRG00000015354 ENSBGRG00000015308 H1-1 (ENSBGRG00000015287) TRIM38 (ENSBGRG00000015165) ENSBGRG00000015087 #22 SLC17A2 (ENSBGRG00000014879) SLC17A3 (ENSBGRG00000014693) SLC17A1 (ENSBGRG00000014550) SLC17A4 (ENSBGRG00000014488) ENSBGRG00000014466 ENSBGRG00000014416 SCGN (ENSBGRG00000014256) CARMIL1 (ENSBGRG00000014134) ENSBGRG00000013998 ENSBGRG00000013804 RIPOR2 (ENSBGRG00000013386) ARMH2 (ENSBGRG00000013330) GMNN (ENSBGRG00000023920) C6orf62 (ENSBGRG00000023815) ACOT13 (ENSBGRG00000023740)