Chordata	ANCESTRAL SPECIES																	ENSGT00940000153903 #21
Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a #22
Euteleostomi	ANCESTRAL SPECIES	42	ENSGT00390000005623	ENSGT00940000155891	ENSGT01030000234621.E	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201 #24	ENSGT00390000000417.a.b	ENSGT00390000010152	ENSGT00940000159763	ENSGT00940000157816	ENSGT00940000166897	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT01090000260003.a.a	ENSGT00940000157182	ENSGT00390000002105	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Sarcopterygii	ANCESTRAL SPECIES	114				ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00960000193057	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201 #24	ENSGT00390000000417.a.b	ENSGT00390000010152	ENSGT00940000159763	ENSGT00940000157816	ENSGT00940000166897	ENSGT00940000160601	ENSGT00940000158825	ENSGT00940000161128	ENSGT01090000260003.a.a	ENSGT00940000157182	ENSGT00390000002105	ENSGT01050000244900.a.a.b	ENSGT00940000158565	ENSGT00940000153561.b.a.a.b
Tetrapoda	ANCESTRAL SPECIES	9	ENSGT00390000003287	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000158300	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201 #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Amniota	ANCESTRAL SPECIES	20	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Mammalia	ANCESTRAL SPECIES	9											ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Theria	ANCESTRAL SPECIES	8										ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Eutheria	ANCESTRAL SPECIES	3	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT01050000245084	ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Glires	ANCESTRAL SPECIES	1	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Rodentia	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242986	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Muroidea	ANCESTRAL SPECIES	65	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242986	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Muroidea_A	ANCESTRAL SPECIES		ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242986	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Cricetidae	ANCESTRAL SPECIES	34	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246786 #19	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066.j #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p
Cricetinae	ANCESTRAL SPECIES	52	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246786 #19	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.i ##24	ENSGT00390000015066.j #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p
Golden Hamster	MODERN SPECIES	908									ENSMAUG00000014319 #15	Ptpn5 (ENSMAUG00000017057) #16	Tmem86a (ENSMAUG00000015010) #17	Spty2d1 (ENSMAUG00000015865) #18	ENSMAUG00000013699 #19	Misfa (ENSMAUG00000013290) #20	Uevld (ENSMAUG00000013172) #21	Tsg101 (ENSMAUG00000014719) #22	Ldhc (ENSMAUG00000011667) #23	ENSMAUG00000010401 #24	ENSMAUG00000009338 #25	ENSMAUG00000015950 #26	ENSMAUG00000010870 #27
Chinese hamster chok1gshd	MODERN SPECIES	226	ENSCGRG00001015132 ##15	ENSCGRG00001013322 ##15	ENSCGRG00001017168 ##15	ENSCGRG00001013950 ##15	ENSCGRG00001000128 ##15	Mrgprx1 (ENSCGRG00001013350) ##15	ENSCGRG00001003638	ENSCGRG00001004027 #15	ENSCGRG00001005262	Ptpn5 (ENSCGRG00001019501) #16	Tmem86a (ENSCGRG00001000634) #17	Spty2d1 (ENSCGRG00001015942) #18	ENSCGRG00001020032	Misfa (ENSCGRG00001020067) #20	Uevld (ENSCGRG00001020288) #21	Tsg101 (ENSCGRG00001022420) #22	Ldhc (ENSCGRG00001018177) #23	ENSCGRG00001003218 ##24	Gtf2h1 (ENSCGRG00001007611) #25	Hps5 (ENSCGRG00001010559) #27	ENSCGRG00001012513	ENSCGRG00001012524
Cricetidae_B	ANCESTRAL SPECIES	73								ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246786 #19	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066.j #25	ENSGT00940000155818 #27
Prairie vole	MODERN SPECIES	9	Svip (ENSMOCG00000012616)	ENSMOCG00000001550	ENSMOCG00000000184	ENSMOCG00000017120 ##15	ENSMOCG00000012949	ENSMOCG00000000883 ##15	ENSMOCG00000009273	Mrgprx1 (ENSMOCG00000021193) ##15	ENSMOCG00000020275 #15	Ptpn5 (ENSMOCG00000002109) #16	Tmem86a (ENSMOCG00000018896) #17	Spty2d1 (ENSMOCG00000016496) #18	ENSMOCG00000010923 #19	Misfa (ENSMOCG00000010685) #20	ENSMOCG00000001154 #21	Tsg101 (ENSMOCG00000019743) #22	ENSMOCG00000016749	ENSMOCG00000015487 #23	ENSMOCG00000002442 #23	ENSMOCG00000020016 ##24	Gtf2h1 (ENSMOCG00000008606) #25	Hps5 (ENSMOCG00000010495) #27	ENSMOCG00000002900	Gabrb3 (ENSMOCG00000022638)	Gabra5 (ENSMOCG00000001448)	Gabrg3 (ENSMOCG00000013639)	Oca2 (ENSMOCG00000009585)	Herc2 (ENSMOCG00000003463)	Nipa1 (ENSMOCG00000008975)	Nipa2 (ENSMOCG00000015300)	Cyfip1 (ENSMOCG00000018559)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000028866	ENSPEMG00000029784	ENSPEMG00000024562	ENSPEMG00000027816	ENSPEMG00000027080	ENSPEMG00000025968	Mrgprx1 (ENSPEMG00000007777) ##15	ENSPEMG00000022426	ENSPEMG00000021299 #15	Ptpn5 (ENSPEMG00000022553) #16	Tmem86a (ENSPEMG00000024287) #17	ENSPEMG00000023153 #18	ENSPEMG00000021660 #19	Misfa (ENSPEMG00000021845) #20	Uevld (ENSPEMG00000012328) #21	ENSPEMG00000022662 #22	ENSPEMG00000022031 #23	ENSPEMG00000011562 ##24	ENSPEMG00000013216 #25	ENSPEMG00000028549	ENSPEMG00000019594	ENSPEMG00000028728	Luzp2 (ENSPEMG00000019695)	Siglech (ENSPEMG00000016963)	Tubgcp5 (ENSPEMG00000017749)	Cyfip1 (ENSPEMG00000020064)	Nipa2 (ENSPEMG00000028381)	Nipa1 (ENSPEMG00000011557)	Herc2 (ENSPEMG00000019120)	Oca2 (ENSPEMG00000020098)	Gabrg3 (ENSPEMG00000019431)
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000029647	ENSPEMG00000030086	Egfl6 (ENSPEMG00000012250)	Tceanc (ENSPEMG00000025764)	ENSPEMG00000013920	ENSPEMG00000030200	ENSPEMG00000013968	ENSPEMG00000014145	Rab9 (ENSPEMG00000027764)	Trappc2 (ENSPEMG00000016002)	Ofd1 (ENSPEMG00000017896)	Gpm6b (ENSPEMG00000000655)	ENSPEMG00000024383	ENSPEMG00000009181	Glra2 (ENSPEMG00000010716)	ENSPEMG00000012662 #22	Fancb (ENSPEMG00000014927)	Mospd2 (ENSPEMG00000016810)	Asb9 (ENSPEMG00000012020)	Asb11 (ENSPEMG00000004210)	Piga (ENSPEMG00000029436)	Vegfd (ENSPEMG00000012888)	Pir (ENSPEMG00000014083)	Bmx (ENSPEMG00000017739)	Ace2 (ENSPEMG00000016498)	Cltrn (ENSPEMG00000009108)	Car5b (ENSPEMG00000014305)	ENSPEMG00000026938	ENSPEMG00000018871	Ap1s2 (ENSPEMG00000007373)	Rnf138rt1 (ENSPEMG00000025202)
Murinae	ANCESTRAL SPECIES		ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00960000190993	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Mus	ANCESTRAL SPECIES		ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00960000190993	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.d ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Mus_A	ANCESTRAL SPECIES	1	ENSGT00960000190993	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.f.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p.c	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Mus_B	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b.d.a.a.b #15	ENSGT01030000234639.A.b.a.b.a.b.a.b.c.a.b.a #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.f.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p.c	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Mouse	MODERN SPECIES	16	Mrgprb4 (ENSMUSG00000070550) ##15	Mrgprb5 (ENSMUSG00000070551) ##15	Mrgprx1 (ENSMUSG00000070552) ##15	Mrgpra4 (ENSMUSG00000067173) #15	Mrgpra3 (ENSMUSG00000078698) #15	Mrgpra2b (ENSMUSG00000096719) #15	Mrgpra2a (ENSMUSG00000093973) #15	Mrgpra1 (ENSMUSG00000050650) #15	Mrgpra9 (ENSMUSG00000074111) #15	Mrgpra6 (ENSMUSG00000052303) #15	Ptpn5 (ENSMUSG00000030854) #16	Tmem86a (ENSMUSG00000010307) #17	Spty2d1 (ENSMUSG00000049516) #18	Misfa (ENSMUSG00000056509) #20	Uevld (ENSMUSG00000043262) #21	Tsg101 (ENSMUSG00000014402) #22	Ldhc (ENSMUSG00000030851) #23	Ldha (ENSMUSG00000063229) ##24	Gtf2h1 (ENSMUSG00000006599) #25	Hps5 (ENSMUSG00000014418) #27	Saa2 (ENSMUSG00000057465)	Saa1 (ENSMUSG00000074115)	Saa4 (ENSMUSG00000040017)	Saa3 (ENSMUSG00000040026)	Saal1 (ENSMUSG00000006763)	Tph1 (ENSMUSG00000040046)	Sergef (ENSMUSG00000030839)	Kcnc1 (ENSMUSG00000058975)	Myod1 (ENSMUSG00000009471)	Otog (ENSMUSG00000009487)	Ush1c (ENSMUSG00000030838)
Mus_C	ANCESTRAL SPECIES	13	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b.c.b #15	ENSGT01030000234639.A.b.a.b.a.b.a.b.c.a.b.a #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246954	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.f.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p.c	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
spretus	MODERN SPECIES	16	Mrgprb3 (MGP_SPRETEiJ_G0030886) ##15	Mrgprb2 (MGP_SPRETEiJ_G0030885) ##15	Mrgprx2 (MGP_SPRETEiJ_G0030884) ##15	Mrgprb1 (MGP_SPRETEiJ_G0030883) ##15	Mrgprb8 (MGP_SPRETEiJ_G0030882) ##15	Mrgprb5 (MGP_SPRETEiJ_G0030881) ##15	Mrgprx1 (MGP_SPRETEiJ_G0030880) ##15	MGP_SPRETEiJ_G0030879 #15	MGP_SPRETEiJ_G0030878 #15	Mrgpra6 (MGP_SPRETEiJ_G0030877) #15	Ptpn5 (MGP_SPRETEiJ_G0030876) #16	Tmem86a (MGP_SPRETEiJ_G0030875) #17	Spty2d1 (MGP_SPRETEiJ_G0030874) #18	MGP_SPRETEiJ_G0030873	Uevld (MGP_SPRETEiJ_G0030872) #21	MGP_SPRETEiJ_G0030871 #22	Ldhc (MGP_SPRETEiJ_G0030870) #23	Ldha (MGP_SPRETEiJ_G0030869) ##24	Gtf2h1 (MGP_SPRETEiJ_G0030868) #25	Hps5 (MGP_SPRETEiJ_G0030867) #27	MGP_SPRETEiJ_G0030866	MGP_SPRETEiJ_G0030865	Saa4 (MGP_SPRETEiJ_G0030864)	Saa3 (MGP_SPRETEiJ_G0030863)	Saal1 (MGP_SPRETEiJ_G0030862)	Tph1 (MGP_SPRETEiJ_G0030861)	Sergef (MGP_SPRETEiJ_G0030860)	Kcnc1 (MGP_SPRETEiJ_G0030859)	Myod1 (MGP_SPRETEiJ_G0030858)	Otog (MGP_SPRETEiJ_G0030857)	Ush1c (MGP_SPRETEiJ_G0030856)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2560					ENSMSIG00000005653 #15	ENSMSIG00000005637 #15	ENSMSIG00000005598 #15	ENSMSIG00000005594	ENSMSIG00000005585 #15	Ptpn5 (ENSMSIG00000005507) #16	Tmem86a (ENSMSIG00000005482) #17	Spty2d1 (ENSMSIG00000005441) #18	ENSMSIG00000005426	Misfa (ENSMSIG00000005413) #20	Uevld (ENSMSIG00000005367) #21	ENSMSIG00000005342 #22	Ldhc (ENSMSIG00000005281) #23	ENSMSIG00000005205 ##24	Gtf2h1 (ENSMSIG00000005013) #25	Hps5 (ENSMSIG00000004919) #27	ENSMSIG00000004906
Steppe mouse	MODERN SPECIES	3179														Myc (ENSMSIG00000013529)	ENSMSIG00000013621	ENSMSIG00000013666 #22
Ryukyu mouse	MODERN SPECIES	16	Dbx1 (MGP_CAROLIEiJ_G0029788)	Nav2 (MGP_CAROLIEiJ_G0029787)	E2f8 (MGP_CAROLIEiJ_G0029786)	Csrp3 (MGP_CAROLIEiJ_G0029785)	Zdhhc13 (MGP_CAROLIEiJ_G0029784)	Mrgprb3 (MGP_CAROLIEiJ_G0029783) ##15	Mrgprx2 (MGP_CAROLIEiJ_G0029782) ##15	Mrgprb1 (MGP_CAROLIEiJ_G0029781) ##15	Mrgprb8 (MGP_CAROLIEiJ_G0029780) ##15	Mrgprx1 (MGP_CAROLIEiJ_G0029779) ##15	Ptpn5 (MGP_CAROLIEiJ_G0029778) #16	Tmem86a (MGP_CAROLIEiJ_G0029777) #17	Spty2d1 (MGP_CAROLIEiJ_G0029776) #18	MGP_CAROLIEiJ_G0029775	Uevld (MGP_CAROLIEiJ_G0029774) #21	Tsg101 (MGP_CAROLIEiJ_G0029773) #22	MGP_CAROLIEiJ_G0029772 #23	Ldha (MGP_CAROLIEiJ_G0029771) ##24	Gtf2h1 (MGP_CAROLIEiJ_G0029770) #25	Hps5 (MGP_CAROLIEiJ_G0029769) #27	MGP_CAROLIEiJ_G0029768	MGP_CAROLIEiJ_G0029767	Saa4 (MGP_CAROLIEiJ_G0029766)	Saa3 (MGP_CAROLIEiJ_G0029765)	Saal1 (MGP_CAROLIEiJ_G0029764)	Tph1 (MGP_CAROLIEiJ_G0029763)	Sergef (MGP_CAROLIEiJ_G0029762)	Kcnc1 (MGP_CAROLIEiJ_G0029761)	Myod1 (MGP_CAROLIEiJ_G0029760)	Otog (MGP_CAROLIEiJ_G0029759)	Ush1c (MGP_CAROLIEiJ_G0029758)
Shrew mouse	MODERN SPECIES		Dbx1 (MGP_PahariEiJ_G0013013)	Nav2 (MGP_PahariEiJ_G0013012)	E2f8 (MGP_PahariEiJ_G0013011)	Csrp3 (MGP_PahariEiJ_G0013010)	Zdhhc13 (MGP_PahariEiJ_G0013009)	Mrgprb3 (MGP_PahariEiJ_G0013008) ##15	Mrgprb2 (MGP_PahariEiJ_G0013007) ##15	MGP_PahariEiJ_G0013006	MGP_PahariEiJ_G0013005 ##15	MGP_PahariEiJ_G0013004 ##15	Ptpn5 (MGP_PahariEiJ_G0013003) #16	Tmem86a (MGP_PahariEiJ_G0013002) #17	Spty2d1 (MGP_PahariEiJ_G0013001) #18	MGP_PahariEiJ_G0013000	Uevld (MGP_PahariEiJ_G0012999) #21	Tsg101 (MGP_PahariEiJ_G0012998) #22	Ldhc (MGP_PahariEiJ_G0012997) #23	MGP_PahariEiJ_G0012996 ##24	Gtf2h1 (MGP_PahariEiJ_G0012995) #25	Hps5 (MGP_PahariEiJ_G0012994) #27	MGP_PahariEiJ_G0012993	MGP_PahariEiJ_G0012992	Saa4 (MGP_PahariEiJ_G0012991)	Saa3 (MGP_PahariEiJ_G0012990)	Saal1 (MGP_PahariEiJ_G0012989)	Tph1 (MGP_PahariEiJ_G0012988)	MGP_PahariEiJ_G0012987	Kcnc1 (MGP_PahariEiJ_G0012986)	Myod1 (MGP_PahariEiJ_G0012985)	Otog (MGP_PahariEiJ_G0012984)	Ush1c (MGP_PahariEiJ_G0012983)
Rat	MODERN SPECIES		ENSRNOG00000068609	LOC120093062 (ENSRNOG00000064044) ##15	Mrgprb13-ps2 (ENSRNOG00000070585) ##15	Mrgprb13 (ENSRNOG00000064327) ##15	Mrgprb5 (ENSRNOG00000022703) ##15	ENSRNOG00000064833	Mrgprb4 (ENSRNOG00000033021) ##15	Mrgprx1 (ENSRNOG00000014242) ##15	Mrgprx3 (ENSRNOG00000014227) #15	Ptpn5 (ENSRNOG00000013981) #16	Tmem86a (ENSRNOG00000013663) #17	AABR07003273.1 (ENSRNOG00000050257)	Spty2d1 (ENSRNOG00000070392) #18	LOC100911574 (ENSRNOG00000066101) #20	Uevld (ENSRNOG00000013624) #21	Tsg101 (ENSRNOG00000013381) #22	Ldhc (ENSRNOG00000013103) #23	Ldha (ENSRNOG00000013009) ##24	Gtf2h1 (ENSRNOG00000012360) #25	Saa4 (ENSRNOG00000055531) #27	Saal1 (ENSRNOG00000011895)	Tph1 (ENSRNOG00000011672)	Sergef (ENSRNOG00000011488)	Kcnc1 (ENSRNOG00000055401)	Myod1 (ENSRNOG00000011306)	Otog (ENSRNOG00000010983)	Ush1c (ENSRNOG00000021149)	Abcc8 (ENSRNOG00000021130)	Kcnj11 (ENSRNOG00000021128)	Ncr3lg1 (ENSRNOG00000070704)	Nomo1 (ENSRNOG00000021118)
Upper Galilee mountains blind mole rat	MODERN SPECIES	765									Mrgprx1 (ENSNGAG00000002808) ##15	Ptpn5 (ENSNGAG00000012788) #16	Tmem86a (ENSNGAG00000016657) #17	ENSNGAG00000007901	ENSNGAG00000018377	Misfa (ENSNGAG00000016983) #20	Uevld (ENSNGAG00000022777) #21	Tsg101 (ENSNGAG00000014332) #22	Ldhc (ENSNGAG00000024361) #23	ENSNGAG00000013575 ##24	Gtf2h1 (ENSNGAG00000002626) #25	Hps5 (ENSNGAG00000005510) #27	ENSNGAG00000015160	ENSNGAG00000012157
Lesser Egyptian jerboa	MODERN SPECIES	43	Dbx1 (ENSJJAG00000015647)	Nav2 (ENSJJAG00000016851)	ENSJJAG00000013317	E2f8 (ENSJJAG00000022430)	Csrp3 (ENSJJAG00000017164)	Zdhhc13 (ENSJJAG00000020502)	ENSJJAG00000016490 #15	ENSJJAG00000016364	ENSJJAG00000023767	Ptpn5 (ENSJJAG00000016907) #16	Tmem86a (ENSJJAG00000020148) #17	Spty2d1 (ENSJJAG00000005658) #18	ENSJJAG00000012407	Misfa (ENSJJAG00000015453) #20	ENSJJAG00000017053	Tsg101 (ENSJJAG00000016833) #22	Ldhc (ENSJJAG00000010418) #23	ENSJJAG00000000482 ##24	ENSJJAG00000012155 #25	ENSJJAG00000013414 #27	ENSJJAG00000012248	Saa3 (ENSJJAG00000017766)
Kangaroo rat	MODERN SPECIES	365	Htatip2 (ENSDORG00000005011)	Dbx1 (ENSDORG00000009286)	Nav2 (ENSDORG00000004179)	E2f8 (ENSDORG00000000040)	Csrp3 (ENSDORG00000000039)	Zdhhc13 (ENSDORG00000000038)	Mrgprx1 (ENSDORG00000023393) ##15	ENSDORG00000025419 #15	ENSDORG00000027554 #15	Ptpn5 (ENSDORG00000005711) #16	Tmem86a (ENSDORG00000026848) #17	Spty2d1 (ENSDORG00000024232) #18	ENSDORG00000030236	Misfa (ENSDORG00000027621) #20	Uevld (ENSDORG00000005099) #21	Tsg101 (ENSDORG00000013773) #22	Ldhc (ENSDORG00000003526) #23	ENSDORG00000003524 ##24	ENSDORG00000004145 #25	ENSDORG00000027902 #27
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005013618	ENSSVLG00005013656 ##15	ENSSVLG00005013725	ENSSVLG00005013794 ##15	ENSSVLG00005013852 ##15	ENSSVLG00005013891 ##15	ENSSVLG00005013942 ##15	ENSSVLG00005014019	ENSSVLG00005014064 #15	PTPN5 (ENSSVLG00005014173) #16	IGSF22 (ENSSVLG00005014642)	TMEM86A (ENSSVLG00005014883) #17	SPTY2D1 (ENSSVLG00005014914) #18	ENSSVLG00005014961	UEVLD (ENSSVLG00005015052) #21	TSG101 (ENSSVLG00005015216) #22	LDHC (ENSSVLG00005015342) #23	ENSSVLG00005015754 ##24	GTF2H1 (ENSSVLG00005016086) #25	HPS5 (ENSSVLG00005004813) #27	ENSSVLG00005004846	ENSSVLG00005004866	ENSSVLG00005004896	SAA4 (ENSSVLG00005004914)	ENSSVLG00005004937	SAAL1 (ENSSVLG00005004983)	TPH1 (ENSSVLG00005005094)	SERGEF (ENSSVLG00005005160)	KCNC1 (ENSSVLG00005005188)	MYOD1 (ENSSVLG00005005222)	OTOG (ENSSVLG00005005330)
Marmotini	ANCESTRAL SPECIES	22	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.t.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.t.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242859	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Alpin marmot	MODERN SPECIES	3	ENSMMMG00000005582 ##15	ENSMMMG00000005573 ##15	ENSMMMG00000005563 ##15	ENSMMMG00000005501 ##15	ENSMMMG00000005493 ##15	ENSMMMG00000005471 ##15	ENSMMMG00000005461	ENSMMMG00000005438 ##15	ENSMMMG00000005434 #15	PTPN5 (ENSMMMG00000005398) #16	TMEM86A (ENSMMMG00000005376) #17	SPTY2D1 (ENSMMMG00000005363) #18	ENSMMMG00000005356	ENSMMMG00000005344 #20	UEVLD (ENSMMMG00000005312) #21	TSG101 (ENSMMMG00000005296) #22	ENSMMMG00000005255 #23	ENSMMMG00000005208 ##24	GTF2H1 (ENSMMMG00000005016) #25	HPS5 (ENSMMMG00000004900) #27	SAA4 (ENSMMMG00000004885)	ENSMMMG00000004876	SAAL1 (ENSMMMG00000004860)	ENSMMMG00000004842	TPH1 (ENSMMMG00000004814)	SERGEF (ENSMMMG00000004759)	ENSMMMG00000004750	KCNC1 (ENSMMMG00000004744)	MYOD1 (ENSMMMG00000004739)	ENSMMMG00000004715	USH1C (ENSMMMG00000004314)
Marmotini_b	ANCESTRAL SPECIES	61					ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242859	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Arctic ground squirrel	MODERN SPECIES	621						ENSUPAG00010010725 ##15	ENSUPAG00010010717 ##15	ENSUPAG00010010710	ENSUPAG00010010705 #15	PTPN5 (ENSUPAG00010010679) #16	IGSF22 (ENSUPAG00010010659)	TMEM86A (ENSUPAG00010010657) #17	ENSUPAG00010010643	ENSUPAG00010010639 #20	UEVLD (ENSUPAG00010010594) #21	TSG101 (ENSUPAG00010010565) #22	LDHC (ENSUPAG00010010550) #23	ENSUPAG00010010535 ##24	GTF2H1 (ENSUPAG00010010513) #25	HPS5 (ENSUPAG00010010479) #27
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	128				ENSSTOG00000026033 ##15	ENSSTOG00000030069 ##15	ENSSTOG00000032510 ##15	ENSSTOG00000032916 ##15	ENSSTOG00000032362	ENSSTOG00000025927 #15	PTPN5 (ENSSTOG00000000962) #16	TMEM86A (ENSSTOG00000001110) #17	SPTY2D1 (ENSSTOG00000009291) #18	ENSSTOG00000032201	ENSSTOG00000032227 #20	UEVLD (ENSSTOG00000009271) #21	TSG101 (ENSSTOG00000024403) #22	LDHC (ENSSTOG00000032003) #23	ENSSTOG00000000014 ##24	ENSSTOG00000033703	GTF2H1 (ENSSTOG00000000013) #25	HPS5 (ENSSTOG00000000011) #27	ENSSTOG00000000012	ENSSTOG00000022064	SAAL1 (ENSSTOG00000003419)	ENSSTOG00000031021	TPH1 (ENSSTOG00000003404)	SERGEF (ENSSTOG00000003395)	KCNC1 (ENSSTOG00000019519)	MYOD1 (ENSSTOG00000011556)	OTOG (ENSSTOG00000025595)	USH1C (ENSSTOG00000001933)
Squirrel	MODERN SPECIES	190															NPBWR1 (ENSSTOG00000031799)	ENSSTOG00000033788 #22	RB1CC1 (ENSSTOG00000003037)	ALKAL1 (ENSSTOG00000003032)	ST18 (ENSSTOG00000016500)	ENSSTOG00000027757	PCMTD1 (ENSSTOG00000005412)	SNTG1 (ENSSTOG00000006780)	SNAI2 (ENSSTOG00000028743)	CLXN (ENSSTOG00000005832)	ENSSTOG00000033326	UBE2V2 (ENSSTOG00000021769)	MCM4 (ENSSTOG00000009905)	PRKDC (ENSSTOG00000009784)	SPIDR (ENSSTOG00000010890)
Hystricomorpha	ANCESTRAL SPECIES	5								ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248165	ENSGT00940000164956	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.b.b.a ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000041424 ##15	ENSHGLG00000046737 ##15	ENSHGLG00000035050 #15	ENSHGLG00000004153	ENSHGLG00000039941 #15	ENSHGLG00000038400	ENSHGLG00000009118 #16	ENSHGLG00000008779	TMEM86A (ENSHGLG00000048247) #17	ENSHGLG00000046693	ENSHGLG00000008282	ENSHGLG00000035318	ENSHGLG00000048762	ENSHGLG00000046195 #20	UEVLD (ENSHGLG00000008452) #21	TSG101 (ENSHGLG00000013227) #22	LDHC (ENSHGLG00000015435) #23	ENSHGLG00000015168 ##24	ENSHGLG00000015129 #25	HPS5 (ENSHGLG00000010391) #27	SAA4 (ENSHGLG00000042878)	ENSHGLG00000039519	SAAL1 (ENSHGLG00000007181)	TPH1 (ENSHGLG00000033079)	SERGEF (ENSHGLG00000005775)	KCNC1 (ENSHGLG00000005420)	MYOD1 (ENSHGLG00000004984)	ENSHGLG00000006891	USH1C (ENSHGLG00000010904)	ABCC8 (ENSHGLG00000008993)	KCNJ11 (ENSHGLG00000037268)
Hystricomorpha_a	ANCESTRAL SPECIES	47									ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248165	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.b.b.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Guinea pig	MODERN SPECIES	215							ENSCPOG00000037848 ##15	ENSCPOG00000003861 #15	PTPN5 (ENSCPOG00000011812) #16	TMEM86A (ENSCPOG00000035510) #17	SPTY2D1 (ENSCPOG00000012002) #18	ENSCPOG00000034821	ENSCPOG00000035484 #20	UEVLD (ENSCPOG00000011997) #21	ENSCPOG00000027522	TSG101 (ENSCPOG00000011994) #22	LDHC (ENSCPOG00000011926) #23	LDHA (ENSCPOG00000031440) ##24	GTF2H1 (ENSCPOG00000004348) #25	HPS5 (ENSCPOG00000004341) #27
Hystricomorpha_b	ANCESTRAL SPECIES	5									ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01090000262692	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Long-tailed chinchilla	MODERN SPECIES	121								ENSCLAG00000017259 #15	ENSCLAG00000017279	PTPN5 (ENSCLAG00000016396) #16	TMEM86A (ENSCLAG00000017173) #17	SPTY2D1 (ENSCLAG00000017224) #18	ENSCLAG00000017004	ENSCLAG00000017270 #20	UEVLD (ENSCLAG00000017090) #21	TSG101 (ENSCLAG00000017169) #22	LDHC (ENSCLAG00000017086) #23	ENSCLAG00000017061 ##24	GTF2H1 (ENSCLAG00000016966) #25	HPS5 (ENSCLAG00000017249) #27	SAA4 (ENSCLAG00000016977)	ENSCLAG00000016741	SAAL1 (ENSCLAG00000017121)	TPH1 (ENSCLAG00000017233)	SERGEF (ENSCLAG00000016819)	KCNC1 (ENSCLAG00000017208)	MYOD1 (ENSCLAG00000016988)	OTOG (ENSCLAG00000017199)	USH1C (ENSCLAG00000017070)	ABCC8 (ENSCLAG00000017273)	KCNJ11 (ENSCLAG00000018089)
Degu	DUPLICATION
Degu	MODERN SPECIES	108						ENSODEG00000010363	ENSODEG00000011399 #15	PTPN5 (ENSODEG00000011115) #16	TMEM86A (ENSODEG00000012064) #17	ENSODEG00000019868	ENSODEG00000010606	ENSODEG00000009912 #20	SPTY2D1 (ENSODEG00000011157) #18	ENSODEG00000010073	ENSODEG00000009385	TSG101 (ENSODEG00000011046) #22	ENSODEG00000010760 #23	ENSODEG00000010324 ##24	ENSODEG00000009666 #25	ENSODEG00000019665 #26	ENSODEG00000010218 #27	ENSODEG00000009884 #27	ENSODEG00000009628	ENSODEG00000009541 ##24	ENSODEG00000009128	SAAL1 (ENSODEG00000013515)	TPH1 (ENSODEG00000009357)	KCNC1 (ENSODEG00000009078)	MYOD1 (ENSODEG00000009827)	OTOG (ENSODEG00000012735)	USH1C (ENSODEG00000009175)
Degu	MODERN SPECIES	224	ENSODEG00000004868	ENSODEG00000004915	ENSODEG00000004024	ADH7 (ENSODEG00000004048)	ENSODEG00000004193	TRMT10A (ENSODEG00000004213)	MTTP (ENSODEG00000004277)	C4orf54 (ENSODEG00000004434)	DAPP1 (ENSODEG00000004478)	ENSODEG00000004603	DNAJB14 (ENSODEG00000002881)	ENSODEG00000003190	ENSODEG00000003228	PPP3CA (ENSODEG00000003402)	BANK1 (ENSODEG00000003823)	ENSODEG00000003969 #22	SLC39A8 (ENSODEG00000004017)	NFKB1 (ENSODEG00000004140)	MANBA (ENSODEG00000004246)	ENSODEG00000004308	ENSODEG00000019071	CISD2 (ENSODEG00000004362)	SLC9B1 (ENSODEG00000004412)	ENSODEG00000004446	SLC9B2 (ENSODEG00000002935)	BDH2 (ENSODEG00000002968)	CENPE (ENSODEG00000003022)	ENSODEG00000003075	ENSODEG00000003090	ENSODEG00000003102	ENSODEG00000003124
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Rabbit	MODERN SPECIES	466												TMEM86A (ENSOCUG00000003954) #17	SPTY2D1 (ENSOCUG00000025674) #18	MISFA (ENSOCUG00000038035)	UEVLD (ENSOCUG00000013952) #21	TSG101 (ENSOCUG00000013940) #22	LDHC (ENSOCUG00000027929) #23	ENSOCUG00000015939 #24	ENSOCUG00000017633 #25	HPS5 (ENSOCUG00000017624) #27	ENSOCUG00000021891	ENSOCUG00000017620	SAA4 (ENSOCUG00000024412)	ENSOCUG00000002424	SAAL1 (ENSOCUG00000002418)	SERGEF (ENSOCUG00000002409)	KCNC1 (ENSOCUG00000025304)	MYOD1 (ENSOCUG00000021405)	OTOG (ENSOCUG00000006205)	USH1C (ENSOCUG00000002028)	ENSOCUG00000039600
Pika	MODERN SPECIES	3556														SPTY2D1 (ENSOPRG00000014500) #18	UEVLD (ENSOPRG00000014486) #21	TSG101 (ENSOPRG00000014461) #22
Tree shrew	MODERN SPECIES	360															ENSTBEG00000012098 #21	ENSTBEG00000011836 #22	LDHC (ENSTBEG00000011741) #23	ENSTBEG00000011714 #24	GTF2H1 (ENSTBEG00000011488) #25
Primates	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a ##24	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Bushbaby	MODERN SPECIES	116	HTATIP2 (ENSOGAG00000008274)	DBX1 (ENSOGAG00000014591)	ENSOGAG00000014577	E2F8 (ENSOGAG00000005774)	CSRP3 (ENSOGAG00000005772)	ZDHHC13 (ENSOGAG00000005767)	ENSOGAG00000005766 ##15	ENSOGAG00000033775 ##15	ENSOGAG00000031800 ##15	ENSOGAG00000032813 ##15	PTPN5 (ENSOGAG00000016683) #16	IGSF22 (ENSOGAG00000008964)	TMEM86A (ENSOGAG00000004415) #17	SPTY2D1 (ENSOGAG00000031814) #18	ENSOGAG00000009268 #23	TSG101 (ENSOGAG00000009264) #22	LDHAL6A (ENSOGAG00000009261)	LDHC (ENSOGAG00000003725) #23	GTF2H1 (ENSOGAG00000000710) #25	HPS5 (ENSOGAG00000011208) #27	ENSOGAG00000011206	ENSOGAG00000027885 #27	ENSOGAG00000029424	SAAL1 (ENSOGAG00000011202)	TPH1 (ENSOGAG00000011200)	SERGEF (ENSOGAG00000011195)	KCNC1 (ENSOGAG00000011185)	MYOD1 (ENSOGAG00000029784)	OTOG (ENSOGAG00000033908)	USH1C (ENSOGAG00000006113)	ABCC8 (ENSOGAG00000006103)
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	27	NELL1 (ENSMICG00000017138)	SLC6A5 (ENSMICG00000017129)	PRMT3 (ENSMICG00000042200)	HTATIP2 (ENSMICG00000017114)	ENSMICG00000037823	DBX1 (ENSMICG00000017111)	NAV2 (ENSMICG00000017096)	E2F8 (ENSMICG00000017089)	CSRP3 (ENSMICG00000044417)	ZDHHC13 (ENSMICG00000017083)	PTPN5 (ENSMICG00000017605) #16	TMEM86A (ENSMICG00000046987) #17	SPTY2D1 (ENSMICG00000017602) #18	ENSMICG00000027423	ENSMICG00000003117	TSG101 (ENSMICG00000008879) #22	LDHAL6A (ENSMICG00000008876)	LDHC (ENSMICG00000009475) #23	LDHA (ENSMICG00000029727) ##24	ENSMICG00000036424	GTF2H1 (ENSMICG00000009467) #25	HPS5 (ENSMICG00000005626) #27	SAA4 (ENSMICG00000036934)	ENSMICG00000005619	ENSMICG00000042946	ENSMICG00000042509	SAAL1 (ENSMICG00000005592)	TPH1 (ENSMICG00000005586)	SERGEF (ENSMICG00000005579)	KCNC1 (ENSMICG00000005569)	MYOD1 (ENSMICG00000005566)
Mouse lemur	MODERN SPECIES	20	FAM241A (ENSMICG00000048071)	PITX2 (ENSMICG00000002070)	ENPEP (ENSMICG00000042642)	ENSMICG00000045345	ELOVL6 (ENSMICG00000045952)	LRIT3 (ENSMICG00000036410)	RRH (ENSMICG00000038685)	GAR1 (ENSMICG00000003326)	CFI (ENSMICG00000003323)	PLA2G12A (ENSMICG00000010304)	CASP6 (ENSMICG00000010297)	ENSMICG00000037926	SEC24B (ENSMICG00000010277)	ENSMICG00000036525	COL25A1 (ENSMICG00000002737)	ENSMICG00000037629 #22	ENSMICG00000002187	OSTC (ENSMICG00000002182)	ENSMICG00000041882	LEF1 (ENSMICG00000012833)	HADH (ENSMICG00000012822)	CYP2U1 (ENSMICG00000012817)	SGMS2 (ENSMICG00000008740)	PAPSS1 (ENSMICG00000016262)	ENSMICG00000017692	DKK2 (ENSMICG00000027157)	GIMD1 (ENSMICG00000045116)	AIMP1 (ENSMICG00000010202)	TBCK (ENSMICG00000010786)	NPNT (ENSMICG00000010776)	GSTCD (ENSMICG00000030887)
Lemuriformes_a	ANCESTRAL SPECIES	24	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.k.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.k.a ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Greater bamboo lemur	MODERN SPECIES	809										TCAIM (ENSPSMG00000022586)	TOPAZ1 (ENSPSMG00000022561)	ZNF445 (ENSPSMG00000022546)	SPTY2D1 (ENSPSMG00000022528) #18	ENSPSMG00000022520	UEVLD (ENSPSMG00000022445) #21	TSG101 (ENSPSMG00000022312) #22	ENSPSMG00000022283	LDHC (ENSPSMG00000022259) #23	LDHA (ENSPSMG00000022183) ##24	GTF2H1 (ENSPSMG00000022156) #25	ENSPSMG00000022128	HPS5 (ENSPSMG00000022113) #27
Coquerels sifaka	MODERN SPECIES	591	ENSPCOG00000026464	HTATIP2 (ENSPCOG00000013907)	DBX1 (ENSPCOG00000019760)	NAV2 (ENSPCOG00000017617)	E2F8 (ENSPCOG00000018715)	CSRP3 (ENSPCOG00000027335)	ZDHHC13 (ENSPCOG00000005078)	ENSPCOG00000002623 ##15	ENSPCOG00000017911 ##15	PTPN5 (ENSPCOG00000018291) #16	IGSF22 (ENSPCOG00000021301)	TMEM86A (ENSPCOG00000015643) #17	SPTY2D1 (ENSPCOG00000020606) #18	ENSPCOG00000015051	UEVLD (ENSPCOG00000016777) #21	TSG101 (ENSPCOG00000022058) #22	ENSPCOG00000022047 #23	ENSPCOG00000025606	GTF2H1 (ENSPCOG00000016794) #25	HPS5 (ENSPCOG00000018482) #27	SAA4 (ENSPCOG00000014650)	ENSPCOG00000008984	ENSPCOG00000023938	SAAL1 (ENSPCOG00000013362)	TPH1 (ENSPCOG00000022787)	SERGEF (ENSPCOG00000015228)	KCNC1 (ENSPCOG00000028118)	MYOD1 (ENSPCOG00000028149)	OTOG (ENSPCOG00000023596)	USH1C (ENSPCOG00000024567)	ABCC8 (ENSPCOG00000018480)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Tarsier	MODERN SPECIES	4895													SPTY2D1 (ENSTSYG00000011672)	ENSTSYG00000031331	UEVLD (ENSTSYG00000009319) #21	TSG101 (ENSTSYG00000009228) #22	LDHAL6A (ENSTSYG00000009217)	ENSTSYG00000005772	ENSTSYG00000027606 #23
Simiiformes	ANCESTRAL SPECIES		ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.c ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000154770.q.b	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a.f.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Mas night monkey	MODERN SPECIES	830	DBX1 (ENSANAG00000026125)	ENSANAG00000024944	NAV2 (ENSANAG00000034282)	E2F8 (ENSANAG00000021738)	CSRP3 (ENSANAG00000020288)	ZDHHC13 (ENSANAG00000021790)	ENSANAG00000021063 ##15	ENSANAG00000016865 ##15	PTPN5 (ENSANAG00000021912) #16	IGSF22 (ENSANAG00000025272)	TMEM86A (ENSANAG00000019649) #17	SPTY2D1 (ENSANAG00000008192) #18	ENSANAG00000024616	UEVLD (ENSANAG00000027080) #21	ENSANAG00000022035	TSG101 (ENSANAG00000019676) #22	LDHAL6A (ENSANAG00000023203)	LDHC (ENSANAG00000037671) #23	ENSANAG00000037705 ##24	GTF2H1 (ENSANAG00000023697) #25	HPS5 (ENSANAG00000018225) #27	ENSANAG00000021057	SAA4 (ENSANAG00000020818)	ENSANAG00000021597	SAAL1 (ENSANAG00000036857)	TPH1 (ENSANAG00000018818)	SERGEF (ENSANAG00000036496)	KCNC1 (ENSANAG00000034875)	MYOD1 (ENSANAG00000032905)	OTOG (ENSANAG00000035931)	USH1C (ENSANAG00000033372)
Cebidae	ANCESTRAL SPECIES		ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.c ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000154770.q.b	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a.f.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Marmoset	MODERN SPECIES	2	DBX1 (ENSCJAG00000006734)	ENSCJAG00000087227	NAV2 (ENSCJAG00000006739)	E2F8 (ENSCJAG00000006811)	CSRP3 (ENSCJAG00000006844)	ZDHHC13 (ENSCJAG00000006851)	MRGPRX2 (ENSCJAG00000006924) ##15	ENSCJAG00000022906 ##15	PTPN5 (ENSCJAG00000009164) #16	IGSF22 (ENSCJAG00000006935)	TMEM86A (ENSCJAG00000076554) #17	SPTY2D1 (ENSCJAG00000006985) #18	ENSCJAG00000080960	ENSCJAG00000075110 #20	UEVLD (ENSCJAG00000007006) #21	TSG101 (ENSCJAG00000086769) #22	LDHAL6A (ENSCJAG00000007067)	ENSCJAG00000080933	LDHC (ENSCJAG00000007081) #23	GTF2H1 (ENSCJAG00000007129) #25	ENSCJAG00000074922	HPS5 (ENSCJAG00000007185) #27	ENSCJAG00000007204	ENSCJAG00000081433	SAA4 (ENSCJAG00000007213)	ENSCJAG00000043934	ENSCJAG00000007283	KCNC1 (ENSCJAG00000007290)	MYOD1 (ENSCJAG00000009258)	OTOG (ENSCJAG00000009263)	USH1C (ENSCJAG00000009310)
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.c ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A.i #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000154770.q.b	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a.f.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Capuchin	MODERN SPECIES	39	DBX1 (ENSCCAG00000030638)	ENSCCAG00000030549	ENSCCAG00000030635	NAV2 (ENSCCAG00000023073)	E2F8 (ENSCCAG00000032678)	CSRP3 (ENSCCAG00000037898)	ZDHHC13 (ENSCCAG00000031657)	PTPN5 (ENSCCAG00000031767) #16	IGSF22 (ENSCCAG00000015473)	TMEM86A (ENSCCAG00000022653) #17	ENSCCAG00000030365	ENSCCAG00000036425 #18	ENSCCAG00000037680	UEVLD (ENSCCAG00000036814) #21	ENSCCAG00000033011	TSG101 (ENSCCAG00000036169) #22	ENSCCAG00000020722	LDHAL6A (ENSCCAG00000031041)	LDHC (ENSCCAG00000031200) #23	ENSCCAG00000029060 ##24	ENSCCAG00000028937	GTF2H1 (ENSCCAG00000028407) #25	HPS5 (ENSCCAG00000032081) #27	ENSCCAG00000024577	ENSCCAG00000024041	SAA4 (ENSCCAG00000025050)	ENSCCAG00000022385	SAAL1 (ENSCCAG00000025101)	TPH1 (ENSCCAG00000023915)	SERGEF (ENSCCAG00000037352)	KCNC1 (ENSCCAG00000033090)
Bolivian squirrel monkey	MODERN SPECIES	42	DBX1 (ENSSBOG00000028890)	ENSSBOG00000034512	NAV2 (ENSSBOG00000031555)	E2F8 (ENSSBOG00000014864)	CSRP3 (ENSSBOG00000026732)	ZDHHC13 (ENSSBOG00000023472)	ENSSBOG00000023462 ##15	PTPN5 (ENSSBOG00000022094) #16	IGSF22 (ENSSBOG00000035057)	TMEM86A (ENSSBOG00000022647) #17	SPTY2D1 (ENSSBOG00000019822) #18	ENSSBOG00000018184	UEVLD (ENSSBOG00000020574) #21	ENSSBOG00000023915	ENSSBOG00000016234	TSG101 (ENSSBOG00000032898) #22	LDHAL6A (ENSSBOG00000032789)	LDHC (ENSSBOG00000029573) #23	ENSSBOG00000023979 ##24	GTF2H1 (ENSSBOG00000035194) #25	HPS5 (ENSSBOG00000034848) #27	ENSSBOG00000025130	SAA4 (ENSSBOG00000035220)	SAAL1 (ENSSBOG00000000873)	TPH1 (ENSSBOG00000021704)	SERGEF (ENSSBOG00000021636)	KCNC1 (ENSSBOG00000032934)	MYOD1 (ENSSBOG00000032168)	OTOG (ENSSBOG00000031057)	USH1C (ENSSBOG00000030041)	ABCC8 (ENSSBOG00000021007)
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00960000187178	ENSGT00390000004965.eb	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Gibbon	MODERN SPECIES	5	NAV2 (ENSNLEG00000017807)	ENSNLEG00000028986	ENSNLEG00000033072	E2F8 (ENSNLEG00000017803)	CSRP3 (ENSNLEG00000017801)	ZDHHC13 (ENSNLEG00000017797)	ENSNLEG00000031608 ##15	ENSNLEG00000032837 ##15	PTPN5 (ENSNLEG00000017791) #16	IGSF22 (ENSNLEG00000017788)	TMEM86A (ENSNLEG00000017787) #17	ENSNLEG00000030606	SPTY2D1 (ENSNLEG00000017786) #18	ENSNLEG00000030850	UEVLD (ENSNLEG00000017785) #21	TSG101 (ENSNLEG00000017783) #22	LDHAL6A (ENSNLEG00000017780)	LDHC (ENSNLEG00000028060) #23	LDHA (ENSNLEG00000030432) ##24	GTF2H1 (ENSNLEG00000017760) #25	HPS5 (ENSNLEG00000017752) #27	ENSNLEG00000017749	ENSNLEG00000028928	ENSNLEG00000017750	SAAL1 (ENSNLEG00000017747)	TPH1 (ENSNLEG00000017744)	SERGEF (ENSNLEG00000017742)	KCNC1 (ENSNLEG00000017741)	OTOG (ENSNLEG00000017737)	USH1C (ENSNLEG00000017735)	ENSNLEG00000034870
Hominidae	ANCESTRAL SPECIES	1	ENSGT00960000187178	ENSGT00390000004965.eb	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Orangutan	MODERN SPECIES	2	DBX1 (ENSPPYG00000003422)	NAV2 (ENSPPYG00000003423)	ENSPPYG00000033030	ENSPPYG00000031150	E2F8 (ENSPPYG00000003424)	CSRP3 (ENSPPYG00000003425)	ZDHHC13 (ENSPPYG00000003426)	MRGPRX1 (ENSPPYG00000034469) ##15	PTPN5 (ENSPPYG00000003430) #16	IGSF22 (ENSPPYG00000039072)	TMEM86A (ENSPPYG00000003431) #17	SPTY2D1 (ENSPPYG00000003432) #18	MISFA (ENSPPYG00000040732)	ENSPPYG00000002907	UEVLD (ENSPPYG00000003433) #21	TSG101 (ENSPPYG00000003434) #22	LDHAL6A (ENSPPYG00000003435)	LDHC (ENSPPYG00000003436) #23	LDHA (ENSPPYG00000003437) ##24	GTF2H1 (ENSPPYG00000003438) #25	HPS5 (ENSPPYG00000003439) #27	ENSPPYG00000036972	SAA2 (ENSPPYG00000003440)	SAA4 (ENSPPYG00000031722)	MRGPRX4 (ENSPPYG00000039348) ##15	ENSPPYG00000003442	MRGPRX3 (ENSPPYG00000038501) ##15	SAAL1 (ENSPPYG00000039447)	TPH1 (ENSPPYG00000003445)	SERGEF (ENSPPYG00000003446)	KCNC1 (ENSPPYG00000003448)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.db	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT00940000155182.b.e.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Gorilla	MODERN SPECIES	2	NAV2 (ENSGGOG00000006949)	ENSGGOG00000042400	E2F8 (ENSGGOG00000011430)	CSRP3 (ENSGGOG00000004823)	ZDHHC13 (ENSGGOG00000004817)	MRGPRX2 (ENSGGOG00000015832) ##15	ENSGGOG00000024277 ##15	ENSGGOG00000025813 ##15	PTPN5 (ENSGGOG00000007218) #16	IGSF22 (ENSGGOG00000007208)	TMEM86A (ENSGGOG00000007204) #17	ENSGGOG00000041151	SPTY2D1 (ENSGGOG00000010379) #18	ENSGGOG00000043165	UEVLD (ENSGGOG00000010367) #21	TSG101 (ENSGGOG00000010359) #22	LDHAL6A (ENSGGOG00000039584)	LDHC (ENSGGOG00000015884) #23	LDHA (ENSGGOG00000010350) ##24	GTF2H1 (ENSGGOG00000008405) #25	HPS5 (ENSGGOG00000010309) #27	ENSGGOG00000006531	ENSGGOG00000010297	SAA2 (ENSGGOG00000010301)	SAA4 (ENSGGOG00000003359)	ENSGGOG00000025669	ENSGGOG00000039414	MRGPRX4 (ENSGGOG00000016538) ##15	TPH1 (ENSGGOG00000009041)	SERGEF (ENSGGOG00000000685)	KCNC1 (ENSGGOG00000015717)
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT00940000155182.b.e.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Human	MODERN SPECIES	2	PRMT3 (ENSG00000185238)	HTATIP2 (ENSG00000109854)	DBX1 (ENSG00000109851)	NAV2 (ENSG00000166833)	E2F8 (ENSG00000129173)	CSRP3 (ENSG00000129170)	ZDHHC13 (ENSG00000177054)	MRGPRX2 (ENSG00000183695) ##15	MRGPRX1 (ENSG00000170255) ##15	PTPN5 (ENSG00000110786) #16	IGSF22 (ENSG00000179057)	TMEM86A (ENSG00000151117) #17	SPTY2D1 (ENSG00000179119) #18	MISFA (ENSG00000247595)	UEVLD (ENSG00000151116) #21	TSG101 (ENSG00000074319) #22	LDHAL6A (ENSG00000166800)	LDHC (ENSG00000166796) #23	LDHA (ENSG00000134333) ##24	GTF2H1 (ENSG00000110768) #25	HPS5 (ENSG00000110756) #27	SAA1 (ENSG00000173432)	SAA2 (ENSG00000134339)	SAA2-SAA4 (ENSG00000255071)	SAA4 (ENSG00000148965)	MRGPRX4 (ENSG00000179817) ##15	MRGPRX3 (ENSG00000179826) ##15	SAAL1 (ENSG00000166788)	TPH1 (ENSG00000129167)	SERGEF (ENSG00000129158)	KCNC1 (ENSG00000129159)
Pan	ANCESTRAL SPECIES	1	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00390000001347.wb	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT00940000155182.b.e.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a
Bonobo	MODERN SPECIES	2	ENSPPAG00000038816	NAV2 (ENSPPAG00000033637)	E2F8 (ENSPPAG00000034910)	CSRP3 (ENSPPAG00000034864)	ZDHHC13 (ENSPPAG00000044061)	MRGPRX2 (ENSPPAG00000020811) ##15	MRGPRX1 (ENSPPAG00000021579) ##15	PTPN5 (ENSPPAG00000029191) #16	IGSF22 (ENSPPAG00000041033)	TMEM86A (ENSPPAG00000030156) #17	ENSPPAG00000028152	SPTY2D1 (ENSPPAG00000032171) #18	ENSPPAG00000021694	ENSPPAG00000028789	UEVLD (ENSPPAG00000028010) #21	TSG101 (ENSPPAG00000032909) #22	LDHAL6A (ENSPPAG00000021825)	LDHC (ENSPPAG00000038065) #23	LDHA (ENSPPAG00000043477) ##24	GTF2H1 (ENSPPAG00000029804) #25	HPS5 (ENSPPAG00000039372) #27	SAA1 (ENSPPAG00000039165)	ENSPPAG00000041426	ENSPPAG00000031094	SAA4 (ENSPPAG00000036586)	ENSPPAG00000039649	MRGPRX4 (ENSPPAG00000008504) ##15	MRGPRX3 (ENSPPAG00000011150) ##15	SAAL1 (ENSPPAG00000035982)	TPH1 (ENSPPAG00000038830)	ENSPPAG00000041411
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000043037	NAV2 (ENSPTRG00000003436)	E2F8 (ENSPTRG00000003435)	CSRP3 (ENSPTRG00000003434)	ZDHHC13 (ENSPTRG00000003433)	MRGPRX2 (ENSPTRG00000003432) ##15	MRGPRX1 (ENSPTRG00000051611) ##15	PTPN5 (ENSPTRG00000003430) #16	IGSF22 (ENSPTRG00000003429)	TMEM86A (ENSPTRG00000003428) #17	ENSPTRG00000041876	SPTY2D1 (ENSPTRG00000003426) #18	ENSPTRG00000049900	ENSPTRG00000045305	UEVLD (ENSPTRG00000003425) #21	TSG101 (ENSPTRG00000003424) #22	LDHAL6A (ENSPTRG00000003423)	LDHC (ENSPTRG00000003422) #23	LDHA (ENSPTRG00000003421) ##24	GTF2H1 (ENSPTRG00000003420) #25	HPS5 (ENSPTRG00000003419) #27	SAA1 (ENSPTRG00000022627)	ENSPTRG00000052833	SAA2 (ENSPTRG00000003416)	SAA4 (ENSPTRG00000003415)	ENSPTRG00000050361	ENSPTRG00000039747	MRGPRX4 (ENSPTRG00000045402) ##15	MRGPRX3 (ENSPTRG00000052640) ##15	SAAL1 (ENSPTRG00000003410)	TPH1 (ENSPTRG00000003409)
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Rhinopithecus	ANCESTRAL SPECIES	188	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00390000003721.d.a.c.b	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1485										PTPN5 (ENSRROG00000034386) #16	IGSF22 (ENSRROG00000033236)	TMEM86A (ENSRROG00000039497) #17	SPTY2D1 (ENSRROG00000038958) #18	ENSRROG00000029345	UEVLD (ENSRROG00000043503) #21	TSG101 (ENSRROG00000007381) #22	LDHAL6A (ENSRROG00000041316)	ENSRROG00000029002	LDHC (ENSRROG00000025865) #23	ENSRROG00000034244 ##24	GTF2H1 (ENSRROG00000044245) #25	HPS5 (ENSRROG00000045543) #27	ENSRROG00000032522	SAA4 (ENSRROG00000041678)	ENSRROG00000030356	MRGPRX3 (ENSRROG00000022175) ##15	ENSRROG00000042459	SAAL1 (ENSRROG00000035972)	TPH1 (ENSRROG00000040674)	SERGEF (ENSRROG00000044406)	KCNC1 (ENSRROG00000025905)
Black snub-nosed monkey	MODERN SPECIES	167	SLC6A5 (ENSRBIG00000041447)	PRMT3 (ENSRBIG00000032769)	HTATIP2 (ENSRBIG00000040284)	DBX1 (ENSRBIG00000027962)	ENSRBIG00000041586	NAV2 (ENSRBIG00000035173)	E2F8 (ENSRBIG00000042597)	CSRP3 (ENSRBIG00000032571)	ZDHHC13 (ENSRBIG00000037316)	PTPN5 (ENSRBIG00000030553) #16	IGSF22 (ENSRBIG00000037442)	TMEM86A (ENSRBIG00000027698) #17	SPTY2D1 (ENSRBIG00000037131) #18	ENSRBIG00000034293	UEVLD (ENSRBIG00000030739) #21	TSG101 (ENSRBIG00000043582) #22	LDHAL6A (ENSRBIG00000037637)	ENSRBIG00000029108	LDHC (ENSRBIG00000039182) #23	ENSRBIG00000003809 ##24	GTF2H1 (ENSRBIG00000027586) #25	HPS5 (ENSRBIG00000030954) #27	ENSRBIG00000041504
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Vervet Monkey	MODERN SPECIES		SLC6A5 (ENSCSAG00000005149)	PRMT3 (ENSCSAG00000005127)	HTATIP2 (ENSCSAG00000005121)	DBX1 (ENSCSAG00000005115)	NAV2 (ENSCSAG00000005106)	E2F8 (ENSCSAG00000005093)	CSRP3 (ENSCSAG00000005088)	ZDHHC13 (ENSCSAG00000005077)	MRGPRX2 (ENSCSAG00000019321) ##15	MRGPRX1 (ENSCSAG00000019322) ##15	PTPN5 (ENSCSAG00000005069) #16	IGSF22 (ENSCSAG00000005064)	TMEM86A (ENSCSAG00000005058) #17	SPTY2D1 (ENSCSAG00000005056) #18	UEVLD (ENSCSAG00000005052) #21	TSG101 (ENSCSAG00000005050) #22	LDHAL6A (ENSCSAG00000005046)	LDHC (ENSCSAG00000005043) #23	ENSCSAG00000005035 ##24	GTF2H1 (ENSCSAG00000005008) #25	HPS5 (ENSCSAG00000005000) #27	ENSCSAG00000004969	ENSCSAG00000004965	SAA4 (ENSCSAG00000004962)	MRGPRX4 (ENSCSAG00000004961) ##15	ENSCSAG00000004958 ##15	ENSCSAG00000019323 ##15	SAAL1 (ENSCSAG00000004954)	TPH1 (ENSCSAG00000004950)	SERGEF (ENSCSAG00000004946)	KCNC1 (ENSCSAG00000004936)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Macaca	ANCESTRAL SPECIES	2	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.a ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT01100000263539.a.a.b.a.a.a.a.a.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Crab-eating macaque	MODERN SPECIES	5	ENSMFAG00000061124	ENSMFAG00000065444	E2F8 (ENSMFAG00000046393)	CSRP3 (ENSMFAG00000020396)	ZDHHC13 (ENSMFAG00000044093)	MRGPRX2 (ENSMFAG00000053055) ##15	ENSMFAG00000058700 ##15	MRGPRX1 (ENSMFAG00000061091) ##15	PTPN5 (ENSMFAG00000034300) #16	IGSF22 (ENSMFAG00000000462)	TMEM86A (ENSMFAG00000060167) #17	SPTY2D1 (ENSMFAG00000044194) #18	ENSMFAG00000001697 #20	ENSMFAG00000051133	ENSMFAG00000000553 #23	TSG101 (ENSMFAG00000032321) #22	ENSMFAG00000058819	LDHAL6A (ENSMFAG00000050157)	LDHC (ENSMFAG00000003940) #23	ENSMFAG00000027126	ENSMFAG00000054002 ##24	GTF2H1 (ENSMFAG00000032995) #25	HPS5 (ENSMFAG00000044104) #27	ENSMFAG00000025977	SAA2 (ENSMFAG00000044536)	SAA4 (ENSMFAG00000038106)	MRGPRX4 (ENSMFAG00000056317) ##15	MRGPRX3 (ENSMFAG00000052090) ##15	SAAL1 (ENSMFAG00000037334)	ENSMFAG00000065213	SERGEF (ENSMFAG00000000777)
Rhesus	MODERN SPECIES	5	PRMT3 (ENSMMUG00000010719)	DBX1 (ENSMMUG00000040777)	NAV2 (ENSMMUG00000016942)	ENSMMUG00000064922	E2F8 (ENSMMUG00000010853)	CSRP3 (ENSMMUG00000019119)	ZDHHC13 (ENSMMUG00000007041)	MRGPRX1 (ENSMMUG00000060151) ##15	PTPN5 (ENSMMUG00000007133) #16	IGSF22 (ENSMMUG00000063818)	TMEM86A (ENSMMUG00000041731) #17	SPTY2D1 (ENSMMUG00000019329) #18	MISFA (ENSMMUG00000044847)	ENSMMUG00000064700	UEVLD (ENSMMUG00000000336) #21	TSG101 (ENSMMUG00000014613) #22	LDHAL6A (ENSMMUG00000014614)	LDHC (ENSMMUG00000014615) #23	LDHA (ENSMMUG00000031024) ##24	GTF2H1 (ENSMMUG00000017959) #25	HPS5 (ENSMMUG00000017958) #27	ENSMMUG00000060306	ENSMMUG00000011177	SAA4 (ENSMMUG00000017960)	MRGPRX4 (ENSMMUG00000055303) ##15	ENSMMUG00000054997	MRGPRX3 (ENSMMUG00000060779) ##15	SAAL1 (ENSMMUG00000014377)	TPH1 (ENSMMUG00000006096)	SERGEF (ENSMMUG00000006405)	KCNC1 (ENSMMUG00000006403)
Pig-tailed macaque	MODERN SPECIES	131	HTATIP2 (ENSMNEG00000030788)	DBX1 (ENSMNEG00000041763)	ENSMNEG00000027094	ENSMNEG00000021455	NAV2 (ENSMNEG00000043339)	ENSMNEG00000045165	E2F8 (ENSMNEG00000040013)	CSRP3 (ENSMNEG00000033382)	ZDHHC13 (ENSMNEG00000037030)	PTPN5 (ENSMNEG00000032650) #16	IGSF22 (ENSMNEG00000035177)	TMEM86A (ENSMNEG00000041047) #17	SPTY2D1 (ENSMNEG00000038544) #18	ENSMNEG00000044112	UEVLD (ENSMNEG00000034421) #21	TSG101 (ENSMNEG00000041853) #22	LDHAL6A (ENSMNEG00000041126)	ENSMNEG00000024949	LDHC (ENSMNEG00000033782) #23	ENSMNEG00000042413 ##24	GTF2H1 (ENSMNEG00000036878) #25	ENSMNEG00000042089	HPS5 (ENSMNEG00000030883) #27	SAA2 (ENSMNEG00000041389)	SAA4 (ENSMNEG00000043404)	ENSMNEG00000035570	SAAL1 (ENSMNEG00000021954)	TPH1 (ENSMNEG00000028667)	SERGEF (ENSMNEG00000043939)	KCNC1 (ENSMNEG00000029034)	MYOD1 (ENSMNEG00000044032)
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147178	ENSGT00950000182891.a.a.b.a.b.b.b.o	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Olive baboon	MODERN SPECIES	3	ENSPANG00000029965	NAV2 (ENSPANG00000017038)	E2F8 (ENSPANG00000005225)	CSRP3 (ENSPANG00000005742)	ZDHHC13 (ENSPANG00000026209)	MRGPRX2 (ENSPANG00000044494) ##15	ENSPANG00000048137	PTPN5 (ENSPANG00000019133) #16	IGSF22 (ENSPANG00000025559)	TMEM86A (ENSPANG00000047838) #17	ENSPANG00000051041	SPTY2D1 (ENSPANG00000007552) #18	ENSPANG00000040640	UEVLD (ENSPANG00000007976) #21	ENSPANG00000044560	TSG101 (ENSPANG00000005375) #22	LDHAL6A (ENSPANG00000008347)	ENSPANG00000047131	LDHC (ENSPANG00000025849) #23	LDHA (ENSPANG00000019081) ##24	GTF2H1 (ENSPANG00000002504) #25	HPS5 (ENSPANG00000000205) #27	ENSPANG00000025709	SAA4 (ENSPANG00000012057)	ENSPANG00000040114 ##15	ENSPANG00000044809 ##15	SAAL1 (ENSPANG00000006539)	TPH1 (ENSPANG00000007046)	SERGEF (ENSPANG00000025793)	KCNC1 (ENSPANG00000015328)	MYOD1 (ENSPANG00000011946)
Cercopithecinae_d	ANCESTRAL SPECIES	99							ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.a ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Drill	MODERN SPECIES	1100																TSG101 (ENSMLEG00000036515) #22	LDHAL6A (ENSMLEG00000041786)	LDHC (ENSMLEG00000028242) #23	ENSMLEG00000003699 ##24	GTF2H1 (ENSMLEG00000042426) #25	HPS5 (ENSMLEG00000035748) #27	ENSMLEG00000028344	ENSMLEG00000028895	SAA4 (ENSMLEG00000032527)	SAAL1 (ENSMLEG00000012869)	TPH1 (ENSMLEG00000032014)	SERGEF (ENSMLEG00000042345)	KCNC1 (ENSMLEG00000033839)	MYOD1 (ENSMLEG00000031495)	OTOG (ENSMLEG00000027393)	USH1C (ENSMLEG00000038490)
Sooty mangabey	MODERN SPECIES	290							CSRP3 (ENSCATG00000030525)	ZDHHC13 (ENSCATG00000009429)	ENSCATG00000035106 ##15	PTPN5 (ENSCATG00000015959) #16	IGSF22 (ENSCATG00000042436)	TMEM86A (ENSCATG00000029000) #17	SPTY2D1 (ENSCATG00000036164) #18	ENSCATG00000033511	UEVLD (ENSCATG00000038967) #21	TSG101 (ENSCATG00000009882) #22	LDHAL6A (ENSCATG00000032545)	ENSCATG00000039048 ##24	GTF2H1 (ENSCATG00000035696) #25	HPS5 (ENSCATG00000035219) #27	ENSCATG00000031928	ENSCATG00000043701	SAA4 (ENSCATG00000033584)	SAAL1 (ENSCATG00000028077)	TPH1 (ENSCATG00000040162)	SERGEF (ENSCATG00000039738)	KCNC1 (ENSCATG00000031951)	MYOD1 (ENSCATG00000031639)	OTOG (ENSCATG00000036498)	USH1C (ENSCATG00000025153)	ABCC8 (ENSCATG00000031694)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Eulipotyphla	ANCESTRAL SPECIES	46														ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25
Hedgehog	MODERN SPECIES	4154																TSG101 (ENSEEUG00000004924) #22	LDHAL6A (ENSEEUG00000004902)	LDHC (ENSEEUG00000004634) #23	LDHA (ENSEEUG00000004603) #24
Common shrew	MODERN SPECIES	832														SPTY2D1 (ENSSARG00000001287) #18	UEVLD (ENSSARG00000001266) #21	TSG101 (ENSSARG00000001249) #22	LDHC (ENSSARG00000001238) #23	LDHA (ENSSARG00000001224) #24	GTF2H1 (ENSSARG00000001210) #25	ENSSARG00000001190	HPS5 (ENSSARG00000001180) #27
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Suina	ANCESTRAL SPECIES	34	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Chacoan peccary	MODERN SPECIES	919	SLC6A5 (ENSCWAG00000007819)	PRMT3 (ENSCWAG00000007978)	HTATIP2 (ENSCWAG00000008210)	DBX1 (ENSCWAG00000008345)	NAV2 (ENSCWAG00000008613)	E2F8 (ENSCWAG00000013295)	CSRP3 (ENSCWAG00000013430)	ZDHHC13 (ENSCWAG00000013556)	ENSCWAG00000013674 ##15	PTPN5 (ENSCWAG00000013752) #16	IGSF22 (ENSCWAG00000014237)	TMEM86A (ENSCWAG00000014433) #17	SPTY2D1 (ENSCWAG00000014459) #18	ENSCWAG00000014496	ENSCWAG00000014527 #21	TSG101 (ENSCWAG00000014545) #22	LDHC (ENSCWAG00000014623) #23	ENSCWAG00000015128	ENSCWAG00000015145 #24	ENSCWAG00000015174	GTF2H1 (ENSCWAG00000015209) #25	HPS5 (ENSCWAG00000015353) #27	SAA4 (ENSCWAG00000015410)	ENSCWAG00000015451	SAAL1 (ENSCWAG00000015499)	TPH1 (ENSCWAG00000015561)	SERGEF (ENSCWAG00000015651)	KCNC1 (ENSCWAG00000015694)	MYOD1 (ENSCWAG00000015755)	OTOG (ENSCWAG00000015797)	USH1C (ENSCWAG00000016103)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Camelidae	ANCESTRAL SPECIES	25	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00990000212997	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Alpaca	MODERN SPECIES	296													TMEM86A (ENSVPAG00000010221) #17	SPTY2D1 (ENSVPAG00000010220) #18	UEVLD (ENSVPAG00000010219) #21	TSG101 (ENSVPAG00000010218) #22	LDHAL6A (ENSVPAG00000010217)	LDHC (ENSVPAG00000010216) #23	LDHA (ENSVPAG00000010215) #24	GTF2H1 (ENSVPAG00000010213) #25	HPS5 (ENSVPAG00000010212) #27	ENSVPAG00000010210	SAAL1 (ENSVPAG00000010209)	TPH1 (ENSVPAG00000010206)	SERGEF (ENSVPAG00000010204)
Arabian camel	MODERN SPECIES	1	SLC6A5 (ENSCDRG00005009100)	PRMT3 (ENSCDRG00005009301)	HTATIP2 (ENSCDRG00005009706)	DBX1 (ENSCDRG00005009814)	NAV2 (ENSCDRG00005009941)	ENSCDRG00005010656	E2F8 (ENSCDRG00005010690)	CSRP3 (ENSCDRG00005010820)	ZDHHC13 (ENSCDRG00005010952)	ENSCDRG00005011022 ##15	PTPN5 (ENSCDRG00005011174) #16	TMEM86A (ENSCDRG00005011463) #17	SPTY2D1 (ENSCDRG00005011497) #18	ENSCDRG00005011524	UEVLD (ENSCDRG00005011579) #21	TSG101 (ENSCDRG00005011857) #22	LDHC (ENSCDRG00005012071) #23	ENSCDRG00005013169 #24	ENSCDRG00005013197	GTF2H1 (ENSCDRG00005013223) #25	HPS5 (ENSCDRG00005013369) #27	ENSCDRG00005013545	ENSCDRG00005013613	SAAL1 (ENSCDRG00005013646)	TPH1 (ENSCDRG00005013726)	SERGEF (ENSCDRG00005013823)	KCNC1 (ENSCDRG00005013940)	MYOD1 (ENSCDRG00005014006)	OTOG (ENSCDRG00005014084)	USH1C (ENSCDRG00005014521)	ABCC8 (ENSCDRG00005014728)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Pecora	DUPLICATION
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.a #22
Yarkand deer	MODERN SPECIES	11	PRMT3 (ENSCHYG00000010820)	ENSCHYG00000011190	ENSCHYG00000011455	DBX1 (ENSCHYG00000011489)	NAV2 (ENSCHYG00000011779)	E2F8 (ENSCHYG00000016190)	CSRP3 (ENSCHYG00000016300)	ZDHHC13 (ENSCHYG00000016429)	ENSCHYG00000016803 ##15	PTPN5 (ENSCHYG00000016835) #16	TMEM86A (ENSCHYG00000017014) #17	SPTY2D1 (ENSCHYG00000017059) #18	MISFA (ENSCHYG00000017128)	UEVLD (ENSCHYG00000017172) #21	ENSCHYG00000017450	ENSCHYG00000017501 #22	LDHC (ENSCHYG00000018080) #23	ENSCHYG00000018608 #24	GTF2H1 (ENSCHYG00000019337) #25	HPS5 (ENSCHYG00000019515) #27	ENSCHYG00000020233	SAA4 (ENSCHYG00000020291)	ENSCHYG00000020339	ENSCHYG00000020374	ENSCHYG00000020410	ENSCHYG00000020435	OR4D5 (ENSCHYG00000020491)	ENSCHYG00000020518	OR10S1 (ENSCHYG00000020561)	OR10G6 (ENSCHYG00000020583)	ENSCHYG00000020602
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.a #22
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1224	HTATIP2 (ENSMMSG00000022848)	ENSMMSG00000022836	DBX1 (ENSMMSG00000022828)	NAV2 (ENSMMSG00000022421)	ENSMMSG00000022344	E2F8 (ENSMMSG00000022333)	CSRP3 (ENSMMSG00000022318)	ZDHHC13 (ENSMMSG00000022294)	ENSMMSG00000022286 ##15	PTPN5 (ENSMMSG00000022223) #16	TMEM86A (ENSMMSG00000022196) #17	SPTY2D1 (ENSMMSG00000022187) #18	ENSMMSG00000022175	MISFA (ENSMMSG00000022162)	UEVLD (ENSMMSG00000022084) #21	ENSMMSG00000022013 #22	LDHC (ENSMMSG00000021972) #23	LDHA (ENSMMSG00000021827) #24	GTF2H1 (ENSMMSG00000021771) #25	HPS5 (ENSMMSG00000021689) #27	ENSMMSG00000021661	ENSMMSG00000021636	ENSMMSG00000021614	SAA4 (ENSMMSG00000021593)	ENSMMSG00000021585	ENSMMSG00000021574	ENSMMSG00000021570	ENSMMSG00000021557	ENSMMSG00000021549	ENSMMSG00000021489	ENSMMSG00000021465
Siberian musk deer	MODERN SPECIES	70	HACD3 (ENSMMSG00000000485)	ENSMMSG00000000445	DPP8 (ENSMMSG00000000258)	IGDCC4 (ENSMMSG00000000147)	IGDCC3 (ENSMMSG00000000099)	PARP16 (ENSMMSG00000019586)	CILP (ENSMMSG00000019540)	CLPX (ENSMMSG00000019476)	PDCD7 (ENSMMSG00000019450)	UBAP1L (ENSMMSG00000019405)	KBTBD13 (ENSMMSG00000019390)	RASL12 (ENSMMSG00000019343)	SLC51B (ENSMMSG00000019303)	MTFMT (ENSMMSG00000019272)	SPG21 (ENSMMSG00000019185)	ENSMMSG00000019166 #22	PTGER2 (ENSMMSG00000019132)	TXNDC16 (ENSMMSG00000019070)	GPR137C (ENSMMSG00000018995)	ERO1A (ENSMMSG00000018893)	PSMC6 (ENSMMSG00000018802)	STYX (ENSMMSG00000018735)	GNPNAT1 (ENSMMSG00000018679)	ENSMMSG00000018656	SERINC5 (ENSMMSG00000018616)	ENSMMSG00000018594	THBS4 (ENSMMSG00000018524)	MTX3 (ENSMMSG00000018473)	ENSMMSG00000018450	CMYA5 (ENSMMSG00000018378)	TENT2 (ENSMMSG00000018319)
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.a #22
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.a #22
Goat	MODERN SPECIES	11	CCDC93 (ENSCHIG00000013749)	INSIG2 (ENSCHIG00000017903)	ENSCHIG00000005523	ENSCHIG00000021503	EN1 (ENSCHIG00000017355)	ENSCHIG00000024655	C1QL2 (ENSCHIG00000018522)	ENSCHIG00000010820	STEAP3 (ENSCHIG00000020375)	C2orf76 (ENSCHIG00000017290)	DBI (ENSCHIG00000015289)	TMEM37 (ENSCHIG00000008579)	SCTR (ENSCHIG00000023110)	CFAP221 (ENSCHIG00000017692)	TMEM177 (ENSCHIG00000013456)	ENSCHIG00000021745 #22	PTPN4 (ENSCHIG00000012348)	ENSCHIG00000018796	ENSCHIG00000014138	ENSCHIG00000009337	TMEM185B (ENSCHIG00000012850)	RALB (ENSCHIG00000019125)	INHBB (ENSCHIG00000024398)	GLI2 (ENSCHIG00000017600)	TFCP2L1 (ENSCHIG00000014608)	ENSCHIG00000010032	CLASP1 (ENSCHIG00000022334)	NIFK (ENSCHIG00000010512)	TSN (ENSCHIG00000010715)	ENSCHIG00000020518	ENSCHIG00000012076
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.a #22
American bison	MODERN SPECIES	1907																ENSBBBG00000019746 #22
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT01010000222320.a.a.a.b.h.b.b.a.a.b.b	ENSGT01010000222320.a.a.a.a.a	ENSGT01010000222320.a.b.a.a	ENSGT01010000222320.a.b.b	ENSGT01010000222320.a.a.b.a.c	ENSGT01010000222320.a.a.b.a.d.b.b	ENSGT01010000222320.a.a.b.a.d.b.a	ENSGT01040000240383.a.b.g.b	ENSGT01040000240383.a.b.g.a.a
Yarkand deer	MODERN SPECIES	31	MARS2 (ENSCHYG00000013177)	BOLL (ENSCHYG00000012765)	PLCL1 (ENSCHYG00000012427)	ENSCHYG00000012371	SATB2 (ENSCHYG00000012100)	ENSCHYG00000011965	C2orf69 (ENSCHYG00000011903)	TYW5 (ENSCHYG00000011850)	MAIP1 (ENSCHYG00000011759)	ENSCHYG00000011736	SPATS2L (ENSCHYG00000011390)	KCTD18 (ENSCHYG00000011325)	SGO2 (ENSCHYG00000011236)	AOX1 (ENSCHYG00000010517)	ENSCHYG00000010452	ENSCHYG00000010410 #22	ENSCHYG00000009851	ENSCHYG00000009654	BZW1 (ENSCHYG00000009251)	ENSCHYG00000004999	CLK1 (ENSCHYG00000004911)	PPIL3 (ENSCHYG00000004901)	NIF3L1 (ENSCHYG00000004879)	ORC2 (ENSCHYG00000004839)	HYCC2 (ENSCHYG00000004790)	ENSCHYG00000004767	CFLAR (ENSCHYG00000004722)	CASP8 (ENSCHYG00000004683)	FLACC1 (ENSCHYG00000004659)	TRAK2 (ENSCHYG00000004632)	STRADB (ENSCHYG00000004596)
Percora_a	ANCESTRAL SPECIES	16	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT01100000266516	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.a	ENSGT00390000004737.b.a.o.a.a.a.a.o	ENSGT00390000004737.b.a.o.a.b	ENSGT01010000222320.a.a.a.b.h.b.b.a.b	ENSGT01050000244869.a.a.b	ENSGT01050000244869.a.a.a.a	ENSGT01050000244869.b.qb.b	ENSGT01050000244869.a.a.a.b.a.a.b.b	ENSGT01050000244869.a.a.a.b.a.a.b.a.d	ENSGT01050000244869.a.a.a.b.a.a.a.a.a
Bovidae	ANCESTRAL SPECIES	16	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT01100000266516	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.o	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057	ENSGT01090000260086.A.c.a.a	ENSGT01010000222320.a.a.a.a.b.f.a
Caprinae	ANCESTRAL SPECIES	29	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00940000163089.b.x.b.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000266516	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.e	ENSGT00390000004737.b.a.o.a.a.a.a.p.a	ENSGT00390000004737.b.a.o.a.a.a.a.o	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.f	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057
Goat	MODERN SPECIES	21	HTATIP2 (ENSCHIG00000024838)	ENSCHIG00000015616	ENSCHIG00000007650	DBX1 (ENSCHIG00000023301)	NAV2 (ENSCHIG00000000920)	E2F8 (ENSCHIG00000023407)	CSRP3 (ENSCHIG00000023005)	ZDHHC13 (ENSCHIG00000024992)	ENSCHIG00000020480 ##15	PTPN5 (ENSCHIG00000008345) #16	TMEM86A (ENSCHIG00000020591) #17	SPTY2D1 (ENSCHIG00000020220) #18	MISFA (ENSCHIG00000005517)	ENSCHIG00000024305	ENSCHIG00000024712	ENSCHIG00000013413 #22	LDHC (ENSCHIG00000013476) #23	LDH-A (ENSCHIG00000018372) #24	GTF2H1 (ENSCHIG00000014725) #25	HPS5 (ENSCHIG00000009350) #27	ENSCHIG00000022162	ENSCHIG00000016791	ENSCHIG00000022653	SAA4 (ENSCHIG00000023600)	ENSCHIG00000012548	ENSCHIG00000020533	ENSCHIG00000003817	ENSCHIG00000019742	ENSCHIG00000007311	OR8D4 (ENSCHIG00000008168)	OR4D5 (ENSCHIG00000022238)
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020025682	DBX1 (ENSOARG00020025685)	NAV2 (ENSOARG00020025736)	E2F8 (ENSOARG00020025926)	ENSOARG00020025934	CSRP3 (ENSOARG00020025944)	ZDHHC13 (ENSOARG00020025951)	ENSOARG00020025964 ##15	PTPN5 (ENSOARG00020025965) #16	TMEM86A (ENSOARG00020025974) #17	SPTY2D1 (ENSOARG00020025977) #18	ENSOARG00020025980	ENSOARG00020025982	UEVLD (ENSOARG00020026000) #21	ENSOARG00020026044	TSG101 (ENSOARG00020026047) #22	ENSOARG00020026053 #23	LDHA (ENSOARG00020026056) #24	GTF2H1 (ENSOARG00020026060) #25	HPS5 (ENSOARG00020026065) #27	ENSOARG00020026068	ENSOARG00020026070	ENSOARG00020026073	ENSOARG00020026078	ENSOARG00020026082	ENSOARG00020026085	ENSOARG00020026088	ENSOARG00020026089	ENSOARG00020012600	OR8D4 (ENSOARG00020012620)	OR4D5 (ENSOARG00020012654)
Bovinae	DUPLICATION
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.a.a #22
American bison	MODERN SPECIES	3103	H2AC6 (ENSBBBG00000006761)	ENSBBBG00000007868	H1-6 (ENSBBBG00000025458)	ENSBBBG00000008266	HFE (ENSBBBG00000025427)	H1-2 (ENSBBBG00000025348)	ENSBBBG00000025339	ENSBBBG00000025330	ENSBBBG00000025323	ENSBBBG00000025318	ENSBBBG00000006706	ENSBBBG00000025309	ENSBBBG00000025303	H1-1 (ENSBBBG00000007772)	TRIM38 (ENSBBBG00000025295)	ENSBBBG00000025278 #22	SLC17A2 (ENSBBBG00000025265)	SLC17A3 (ENSBBBG00000006673)	SLC17A1 (ENSBBBG00000007749)	SLC17A4 (ENSBBBG00000008071)	ENSBBBG00000008238	H2BC1 (ENSBBBG00000024995)	SCGN (ENSBBBG00000024988)	CARMIL1 (ENSBBBG00000024962)	ENSBBBG00000024875	RIPOR2 (ENSBBBG00000024682)	ARMH2 (ENSBBBG00000024330)	GMNN (ENSBBBG00000008707)	C6orf62 (ENSBBBG00000024286)	ACOT13 (ENSBBBG00000000283)	TDP2 (ENSBBBG00000024232)
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	27	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.a.b.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.a	ENSGT00390000004737.b.a.o.a.b	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057	ENSGT01010000222320.a.a.a.a.b.f.a
Bos	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.a.b.a #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.a.b.a #22
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005022254	HTATIP2 (ENSBIXG00005022339)	DBX1 (ENSBIXG00005022387)	ENSBIXG00005022396	ENSBIXG00005007225	NAV2 (ENSBIXG00005023131)	E2F8 (ENSBIXG00005023306)	CSRP3 (ENSBIXG00005023367)	ZDHHC13 (ENSBIXG00005023459)	ENSBIXG00005023495 ##15	PTPN5 (ENSBIXG00005023528) #16	TMEM86A (ENSBIXG00005004037) #17	SPTY2D1 (ENSBIXG00005023655) #18	ENSBIXG00005023672	UEVLD (ENSBIXG00005007235) #21	ENSBIXG00005007624 #22	LDHC (ENSBIXG00005023917) #23	ENSBIXG00005024064 #24	GTF2H1 (ENSBIXG00005004134) #25	HPS5 (ENSBIXG00005024315) #27	ENSBIXG00005004162	ENSBIXG00005024453	ENSBIXG00005004178	ENSBIXG00005024490	ENSBIXG00005004182	ENSBIXG00005024511	OR8D4 (ENSBIXG00005024533)	ENSBIXG00005024579	OR10S1 (ENSBIXG00005024588)	OR10G6 (ENSBIXG00005024593)	ENSBIXG00005024601
American bison	MODERN SPECIES	3302	HTATIP2 (ENSBBBG00000013427)	ENSBBBG00000013401	DBX1 (ENSBBBG00000013393)	NAV2 (ENSBBBG00000001584)	ENSBBBG00000001687	E2F8 (ENSBBBG00000013084)	CSRP3 (ENSBBBG00000013070)	ZDHHC13 (ENSBBBG00000013052)	ENSBBBG00000013032 ##15	PTPN5 (ENSBBBG00000013029) #16	TMEM86A (ENSBBBG00000002600) #17	SPTY2D1 (ENSBBBG00000013009) #18	ENSBBBG00000012981	MISFA (ENSBBBG00000012977)	UEVLD (ENSBBBG00000012967) #21	ENSBBBG00000002528 #22	LDHC (ENSBBBG00000012846) #23	ENSBBBG00000001786 #24	GTF2H1 (ENSBBBG00000002487) #25	HPS5 (ENSBBBG00000007648) #27	ENSBBBG00000012737	ENSBBBG00000012698	ENSBBBG00000012686	SAA4 (ENSBBBG00000002439)	ENSBBBG00000012666	ENSBBBG00000012663	OR8D4 (ENSBBBG00000002436)	OR4D5 (ENSBBBG00000012653)	OR10S1 (ENSBBBG00000002433)	OR10G6 (ENSBBBG00000002432)	ENSBBBG00000012644
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.a.b.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.a.b.b #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.a.b.b #22
Hybrid Bos Indicus	MODERN SPECIES	14	KLHDC8B (ENSBIXG00005011961)	CCDC71 (ENSBIXG00005000414)	ENSBIXG00005002536	LAMB2 (ENSBIXG00005016314)	USP19 (ENSBIXG00005017369)	QARS1 (ENSBIXG00005017449)	QRICH1 (ENSBIXG00005017495)	IMPDH2 (ENSBIXG00005002847)	NDUFAF3 (ENSBIXG00005002855)	DALRD3 (ENSBIXG00005017624)	P4HTM (ENSBIXG00005002875)	WDR6 (ENSBIXG00005017807)	ARIH2 (ENSBIXG00005002897)	ENSBIXG00005002903	ENSBIXG00005017902	ENSBIXG00005017935 #22	PRKAR2A (ENSBIXG00005018013)	IP6K2 (ENSBIXG00005018059)	NCKIPSD (ENSBIXG00005002932)	CELSR3 (ENSBIXG00005018136)	SLC26A6 (ENSBIXG00005018196)	TMEM89 (ENSBIXG00005018210)	ENSBIXG00005018217	UQCRC1 (ENSBIXG00005007288)	UCN2 (ENSBIXG00005005662)	ENSBIXG00005018733	PFKFB4 (ENSBIXG00005018806)	ENSBIXG00005006874	SHISA5 (ENSBIXG00005018853)	TREX1 (ENSBIXG00005018879)	ATRIP (ENSBIXG00005003099)
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.k.b.b #22
Bos	ANCESTRAL SPECIES	11	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.d	ENSGT00390000004737.b.a.o.a.a.a.a.o.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.c	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.d	ENSGT00390000004737.b.a.o.a.a.a.a.o.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.c	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057
Cow	MODERN SPECIES	21	ENSBTAG00000048576	SLC6A5 (ENSBTAG00000014300)	PRMT3 (ENSBTAG00000013421)	HTATIP2 (ENSBTAG00000013419)	ENSBTAG00000008684	DBX1 (ENSBTAG00000002733)	NAV2 (ENSBTAG00000018431)	E2F8 (ENSBTAG00000017446)	CSRP3 (ENSBTAG00000011869)	ZDHHC13 (ENSBTAG00000020642)	MRGPRX2 (ENSBTAG00000002245) ##15	PTPN5 (ENSBTAG00000020257) #16	TMEM86A (ENSBTAG00000048059) #17	SPTY2D1 (ENSBTAG00000001660) #18	UEVLD (ENSBTAG00000013568) #21	TSG101 (ENSBTAG00000013563) #22	LDHC (ENSBTAG00000002488) #23	LDHA (ENSBTAG00000008683) #24	GTF2H1 (ENSBTAG00000005160) #25	HPS5 (ENSBTAG00000005147) #27	SAA3 (ENSBTAG00000049589)	ENSBTAG00000022395	SAA2 (ENSBTAG00000022394)	SAA4 (ENSBTAG00000002963)	M-SAA3.2 (ENSBTAG00000054278)	OR6M2 (ENSBTAG00000040020)	OR6M2C (ENSBTAG00000052437)	OR6M7 (ENSBTAG00000037485)	OR8D4 (ENSBTAG00000038802)	OR4D5 (ENSBTAG00000006634)	OR8B72 (ENSBTAG00000049492)
Bos_a	ANCESTRAL SPECIES	106							ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000266516	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27
Wild yak	MODERN SPECIES	1200							E2F8 (ENSBMUG00000021434)	CSRP3 (ENSBMUG00000021458)	ZDHHC13 (ENSBMUG00000021491)	ENSBMUG00000021522 ##15	PTPN5 (ENSBMUG00000021545) #16	TMEM86A (ENSBMUG00000021555) #17	SPTY2D1 (ENSBMUG00000021567) #18	ENSBMUG00000021575	UEVLD (ENSBMUG00000021628) #21	TSG101 (ENSBMUG00000021667) #22	ENSBMUG00000021687 #23	ENSBMUG00000021774 #24	GTF2H1 (ENSBMUG00000021811) #25	HPS5 (ENSBMUG00000021851) #27	ENSBMUG00000021888
Domestic yak	MODERN SPECIES	16	H2AC6 (ENSBGRG00000016006)	ENSBGRG00000015917	ENSBGRG00000015895	HFE (ENSBGRG00000015583)	H1-2 (ENSBGRG00000015537)	ENSBGRG00000015501	ENSBGRG00000015470	H2BC3 (ENSBGRG00000015451)	H2AC4 (ENSBGRG00000015427)	ENSBGRG00000015411	ENSBGRG00000015388	ENSBGRG00000015354	ENSBGRG00000015308	H1-1 (ENSBGRG00000015287)	TRIM38 (ENSBGRG00000015165)	ENSBGRG00000015087 #22	SLC17A2 (ENSBGRG00000014879)	SLC17A3 (ENSBGRG00000014693)	SLC17A1 (ENSBGRG00000014550)	SLC17A4 (ENSBGRG00000014488)	ENSBGRG00000014466	ENSBGRG00000014416	SCGN (ENSBGRG00000014256)	CARMIL1 (ENSBGRG00000014134)	ENSBGRG00000013998	ENSBGRG00000013804	RIPOR2 (ENSBGRG00000013386)	ARMH2 (ENSBGRG00000013330)	GMNN (ENSBGRG00000023920)	C6orf62 (ENSBGRG00000023815)	ACOT13 (ENSBGRG00000023740)
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Domestic yak	MODERN SPECIES	12	WDR88 (ENSBGRG00000012742)	LRP3 (ENSBGRG00000012595)	SLC7A10 (ENSBGRG00000012434)	ENSBGRG00000012424	ENSBGRG00000012376	CEBPG (ENSBGRG00000012352)	PEPD (ENSBGRG00000011874)	CHST8 (ENSBGRG00000011805)	KCTD15 (ENSBGRG00000011698)	LSM14A (ENSBGRG00000011045)	GARRE1 (ENSBGRG00000010861)	GPI (ENSBGRG00000022167)	PDCD2L (ENSBGRG00000022086)	ENSBGRG00000022026	WTIP (ENSBGRG00000021906)	ENSBGRG00000021883 #22	ENSBGRG00000021783	ENSBGRG00000021728	ENSBGRG00000021684	ENSBGRG00000021636	ENSBGRG00000021609	ENSBGRG00000021563	ENSBGRG00000021528	ENSBGRG00000021504
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.l #22
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020022402	DDX18 (ENSOARG00020022459)	ENSOARG00020022526	CCDC93 (ENSOARG00020022566)	Insig2 (ENSOARG00020022883)	EN1 (ENSOARG00020022915)	C1QL2 (ENSOARG00020022941)	STEAP3 (ENSOARG00020022977)	C2orf76 (ENSOARG00020023056)	DBI (ENSOARG00020023089)	TMEM37 (ENSOARG00020023172)	SCTR (ENSOARG00020023191)	CFAP221 (ENSOARG00020023250)	TMEM177 (ENSOARG00020023343)	PTPN4 (ENSOARG00020023367)	ENSOARG00020023578 #22	EPB41L5 (ENSOARG00020023616)	TMEM185B (ENSOARG00020023687)	RALB (ENSOARG00020023701)	INHBB (ENSOARG00020023725)	GLI2 (ENSOARG00020023763)	TFCP2L1 (ENSOARG00020023824)	ENSOARG00020023891	CLASP1 (ENSOARG00020023927)	ENSOARG00020024020	NIFK (ENSOARG00020024037)	TSN (ENSOARG00020024047)	ENSOARG00020024083	ENSOARG00020024099	ENSOARG00020006534	ENSOARG00020006557
Cetacea	DUPLICATION
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00390000012981.rb.a.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00390000004147.d	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00390000012981.rb.a.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Beluga whale	MODERN SPECIES	32	SLC6A5 (ENSDLEG00000014762)	PRMT3 (ENSDLEG00000014804)	HTATIP2 (ENSDLEG00000014829)	DBX1 (ENSDLEG00000014842)	NAV2 (ENSDLEG00000014897)	ENSDLEG00000015354	E2F8 (ENSDLEG00000015370)	CSRP3 (ENSDLEG00000015409)	ZDHHC13 (ENSDLEG00000015429)	PTPN5 (ENSDLEG00000015461) #16	TMEM86A (ENSDLEG00000015500) #17	ENSDLEG00000015507	MISFA (ENSDLEG00000015517)	UEVLD (ENSDLEG00000015524) #21	ENSDLEG00000015553	TSG101 (ENSDLEG00000015564) #22	ENSDLEG00000015577 #23	ENSDLEG00000015586 #24	GTF2H1 (ENSDLEG00000015605) #25	HPS5 (ENSDLEG00000015626) #27	ENSDLEG00000015657	SAAL1 (ENSDLEG00000015675)	TPH1 (ENSDLEG00000015701)	SERGEF (ENSDLEG00000015727)	KCNC1 (ENSDLEG00000015743)	MYOD1 (ENSDLEG00000015755)	OTOG (ENSDLEG00000015797)	USH1C (ENSDLEG00000016116)	ABCC8 (ENSDLEG00000016659)	KCNJ11 (ENSDLEG00000020835)	ENSDLEG00000020840
Narwhal	MODERN SPECIES	314	PRMT3 (ENSMMNG00015016799)	HTATIP2 (ENSMMNG00015016730)	DBX1 (ENSMMNG00015016689)	ENSMMNG00015016644	NAV2 (ENSMMNG00015016103)	E2F8 (ENSMMNG00015015849)	CSRP3 (ENSMMNG00015015807)	ZDHHC13 (ENSMMNG00015021814)	PTPN5 (ENSMMNG00015021793) #16	IGSF22 (ENSMMNG00015021782)	TMEM86A (ENSMMNG00015021775) #17	SPTY2D1 (ENSMMNG00015021771) #18	MISFA (ENSMMNG00015021767)	ENSMMNG00015021762	UEVLD (ENSMMNG00015021744) #21	TSG101 (ENSMMNG00015021720) #22	ENSMMNG00015021710 #23	ENSMMNG00015021702 #24	ENSMMNG00015021700	ENSMMNG00015021692	GTF2H1 (ENSMMNG00015021680) #25	HPS5 (ENSMMNG00015021667) #27	ENSMMNG00015021655	ENSMMNG00015021651	ENSMMNG00015021647	SAAL1 (ENSMMNG00015021635)	TPH1 (ENSMMNG00015021621)	SERGEF (ENSMMNG00015021595)	KCNC1 (ENSMMNG00015021571)	MYOD1 (ENSMMNG00015021563)	OTOG (ENSMMNG00015021531)
Dolphin	MODERN SPECIES	3409											PTPN5 (ENSTTRG00000013763) #16	IGSF22 (ENSTTRG00000013762)	TMEM86A (ENSTTRG00000013761) #17	ENSTTRG00000013760	UEVLD (ENSTTRG00000013759) #21	TSG101 (ENSTTRG00000013758) #22	LDHAL6A (ENSTTRG00000013757)	LDHA (ENSTTRG00000013756) #24	GTF2H1 (ENSTTRG00000013755) #25	HPS5 (ENSTTRG00000013754) #27
Sperm whale	MODERN SPECIES	7	PRMT3 (ENSPCTG00005008136)	HTATIP2 (ENSPCTG00005008097)	DBX1 (ENSPCTG00005008072)	ENSPCTG00005008063	E2F8 (ENSPCTG00005008024)	CSRP3 (ENSPCTG00005007959)	ZDHHC13 (ENSPCTG00005007891)	ENSPCTG00005007781 ##15	ENSPCTG00005007749	PTPN5 (ENSPCTG00005007677) #16	IGSF22 (ENSPCTG00005007611)	TMEM86A (ENSPCTG00005007580) #17	SPTY2D1 (ENSPCTG00005007559) #18	MISFA (ENSPCTG00005007534)	UEVLD (ENSPCTG00005007495) #21	TSG101 (ENSPCTG00005007406) #22	ENSPCTG00005007383	LDHC (ENSPCTG00005007321) #23	LDHA (ENSPCTG00005007271) #24	ENSPCTG00005007257	GTF2H1 (ENSPCTG00005007039) #25	HPS5 (ENSPCTG00005006903) #27	ENSPCTG00005006852	ENSPCTG00005006824	ENSPCTG00005006800	SAAL1 (ENSPCTG00005006752)	TPH1 (ENSPCTG00005006667)	SERGEF (ENSPCTG00005006546)	KCNC1 (ENSPCTG00005006503)	MYOD1 (ENSPCTG00005006484)	OTOG (ENSPCTG00005006334)
Blue whale	MODERN SPECIES	19	PRMT3 (ENSBMSG00010010920)	HTATIP2 (ENSBMSG00010010875)	DBX1 (ENSBMSG00010010849)	ENSBMSG00010010837	NAV2 (ENSBMSG00010010470)	E2F8 (ENSBMSG00010010293)	CSRP3 (ENSBMSG00010010253)	ZDHHC13 (ENSBMSG00010010191)	ENSBMSG00010010155	PTPN5 (ENSBMSG00010010102) #16	IGSF22 (ENSBMSG00010010054)	TMEM86A (ENSBMSG00010010029) #17	ENSBMSG00010010018	MISFA (ENSBMSG00010010000)	UEVLD (ENSBMSG00010009936) #21	ENSBMSG00010009877 #22	ENSBMSG00010009854	LDHC (ENSBMSG00010009652) #23	ENSBMSG00010009579 #24	GTF2H1 (ENSBMSG00010009536) #25	HPS5 (ENSBMSG00010009507) #27	ENSBMSG00010009483	ENSBMSG00010009474	ENSBMSG00010009467	SAAL1 (ENSBMSG00010012874)	TPH1 (ENSBMSG00010012841)	ENSBMSG00010012824	SERGEF (ENSBMSG00010012809)	KCNC1 (ENSBMSG00010012786)	MYOD1 (ENSBMSG00010012778)	OTOG (ENSBMSG00010012712)
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.m.b #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.m.b #22
Sperm whale	MODERN SPECIES	16	GRB10 (ENSPCTG00005001292)	ENSPCTG00005001225	ENSPCTG00005001218	VSTM2A (ENSPCTG00005001196)	SEC61G (ENSPCTG00005001175)	EGFR (ENSPCTG00005001100)	LANCL2 (ENSPCTG00005001055)	VOPP1 (ENSPCTG00005000911)	PGAM2 (ENSPCTG00005000870)	DBNL (ENSPCTG00005000789)	UBE2D4 (ENSPCTG00005000753)	ENSPCTG00005000738	IGFBP3 (ENSPCTG00005000698)	IGFBP1 (ENSPCTG00005000667)	ADCY1 (ENSPCTG00005000587)	ENSPCTG00005000553 #22	RAMP3 (ENSPCTG00005000535)	ENSPCTG00005000520	TBRG4 (ENSPCTG00005000487)	ENSPCTG00005000414	CCM2 (ENSPCTG00005000360)	ENSPCTG00005000278	ENSPCTG00005000252	PURB (ENSPCTG00005000229)	H2AZ2 (ENSPCTG00005006851)	ENSPCTG00005006814	ENSPCTG00005006010	ENSPCTG00005005920	CAMK2B (ENSPCTG00005005842)	YKT6 (ENSPCTG00005005767)	GCK (ENSPCTG00005005671)
Blue whale	MODERN SPECIES	20	ENSBMSG00010015380	VSTM2A (ENSBMSG00010015308)	ENSBMSG00010015274	EGFR (ENSBMSG00010015093)	ENSBMSG00010015050	VOPP1 (ENSBMSG00010014847)	PGAM2 (ENSBMSG00010014799)	DBNL (ENSBMSG00010014621)	ENSBMSG00010014534	URGCP (ENSBMSG00010014423)	ENSBMSG00010014382	TNS3 (ENSBMSG00010014209)	IGFBP3 (ENSBMSG00010014079)	IGFBP1 (ENSBMSG00010013990)	ADCY1 (ENSBMSG00010013864)	ENSBMSG00010011864 #22	ENSBMSG00010011856	RAMP3 (ENSBMSG00010011842)	ENSBMSG00010011823	TBRG4 (ENSBMSG00010011787)	ENSBMSG00010011679	CCM2 (ENSBMSG00010011613)	MYO1G (ENSBMSG00010011571)	PURB (ENSBMSG00010011548)	H2AZ2 (ENSBMSG00010011437)	ENSBMSG00010011406	ZMIZ2 (ENSBMSG00010011312)	OGDH (ENSBMSG00010011176)	TMED4 (ENSBMSG00010011091)	DDX56 (ENSBMSG00010011061)	NPC1L1 (ENSBMSG00010010957)
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.n #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.n #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.n #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000153903.a.a.n #22
Vaquita	MODERN SPECIES	19	HTATIP2 (ENSPSNG00000014906)	DBX1 (ENSPSNG00000014795)	ENSPSNG00000014727	ENSPSNG00000014664	NAV2 (ENSPSNG00000012172)	E2F8 (ENSPSNG00000011946)	CSRP3 (ENSPSNG00000011781)	ZDHHC13 (ENSPSNG00000011708)	PTPN5 (ENSPSNG00000011269) #16	IGSF22 (ENSPSNG00000011018)	TMEM86A (ENSPSNG00000010973) #17	SPTY2D1 (ENSPSNG00000010952) #18	MISFA (ENSPSNG00000010875)	ENSPSNG00000010762	UEVLD (ENSPSNG00000010589) #21	TSG101 (ENSPSNG00000010472) #22	ENSPSNG00000010416 #23	ENSPSNG00000010383 #24	ENSPSNG00000010281	GTF2H1 (ENSPSNG00000010188) #25	HPS5 (ENSPSNG00000009992) #27	ENSPSNG00000009837	ENSPSNG00000009755	ENSPSNG00000009709	ENSPSNG00000009625	ENSPSNG00000009564	SAAL1 (ENSPSNG00000009495)	TPH1 (ENSPSNG00000009426)	SERGEF (ENSPSNG00000009362)	KCNC1 (ENSPSNG00000009240)	MYOD1 (ENSPSNG00000009194)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Carnivora	ANCESTRAL SPECIES	7	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00940000153201.j.n #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Felidae	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684.g	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684.g	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684.g	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
lion	MODERN SPECIES	10	DBX1 (ENSPLOG00000019812)	ENSPLOG00000019783	ENSPLOG00000019733	NAV2 (ENSPLOG00000017874)	E2F8 (ENSPLOG00000017576)	CSRP3 (ENSPLOG00000017516)	ZDHHC13 (ENSPLOG00000017457)	ENSPLOG00000017425 ##15	PTPN5 (ENSPLOG00000017060) #16	IGSF22 (ENSPLOG00000016855)	TMEM86A (ENSPLOG00000016800) #17	SPTY2D1 (ENSPLOG00000016758) #18	ENSPLOG00000016726	MISFA (ENSPLOG00000016698)	UEVLD (ENSPLOG00000016574) #21	TSG101 (ENSPLOG00000016477) #22	LDHC (ENSPLOG00000016357) #23	ENSPLOG00000016282 #24	GTF2H1 (ENSPLOG00000016181) #25	HPS5 (ENSPLOG00000016112) #27	ENSPLOG00000016063	ENSPLOG00000016007	SAAL1 (ENSPLOG00000015945)	TPH1 (ENSPLOG00000015838)	SERGEF (ENSPLOG00000015624)	KCNC1 (ENSPLOG00000015532)	MYOD1 (ENSPLOG00000015478)	OTOG (ENSPLOG00000014950)	USH1C (ENSPLOG00000014009)	ABCC8 (ENSPLOG00000011679)	KCNJ11 (ENSPLOG00000011463)
leopard	MODERN SPECIES	29	NELL1 (ENSPPRG00000000327)	SLC6A5 (ENSPPRG00000000873)	PRMT3 (ENSPPRG00000001326)	HTATIP2 (ENSPPRG00000002560)	DBX1 (ENSPPRG00000002780)	NAV2 (ENSPPRG00000013270)	E2F8 (ENSPPRG00000014115)	ENSPPRG00000015668	ZDHHC13 (ENSPPRG00000020544)	PTPN5 (ENSPPRG00000000183) #16	IGSF22 (ENSPPRG00000000851)	TMEM86A (ENSPPRG00000001090) #17	SPTY2D1 (ENSPPRG00000001541) #18	ENSPPRG00000001886	UEVLD (ENSPPRG00000003736) #21	TSG101 (ENSPPRG00000004620) #22	ENSPPRG00000006170	ENSPPRG00000008586	LDHC (ENSPPRG00000010475) #23	ENSPPRG00000014382 #24	GTF2H1 (ENSPPRG00000020251) #25	HPS5 (ENSPPRG00000022226) #27	ENSPPRG00000024363	ENSPPRG00000024065	ENSPPRG00000023577	ENSPPRG00000000993	SAAL1 (ENSPPRG00000001488)	TPH1 (ENSPPRG00000001846)	SERGEF (ENSPPRG00000003386)	KCNC1 (ENSPPRG00000003611)	MYOD1 (ENSPPRG00000003796)
Tiger	MODERN SPECIES	586	SLC6A5 (ENSPTIG00000019076)	PRMT3 (ENSPTIG00000016281)	HTATIP2 (ENSPTIG00000013551)	DBX1 (ENSPTIG00000012810)	NAV2 (ENSPTIG00000012689)	E2F8 (ENSPTIG00000011789)	CSRP3 (ENSPTIG00000011374)	ZDHHC13 (ENSPTIG00000007499)	ENSPTIG00000007006 ##15	PTPN5 (ENSPTIG00000020942) #16	IGSF22 (ENSPTIG00000020496)	TMEM86A (ENSPTIG00000020012) #17	SPTY2D1 (ENSPTIG00000019614) #18	ENSPTIG00000019097	UEVLD (ENSPTIG00000013958) #21	TSG101 (ENSPTIG00000011586) #22	ENSPTIG00000011335	LDHC (ENSPTIG00000007918) #23	LDHA (ENSPTIG00000016734) #24	GTF2H1 (ENSPTIG00000015340) #25	HPS5 (ENSPTIG00000010507) #27	ENSPTIG00000010049	ENSPTIG00000008520	ENSPTIG00000005766	ENSPTIG00000005385	SAAL1 (ENSPTIG00000020213)	TPH1 (ENSPTIG00000019857)	SERGEF (ENSPTIG00000016255)	KCNC1 (ENSPTIG00000014448)	ENSPTIG00000013033
Cat	MODERN SPECIES	241	HTATIP2 (ENSFCAG00000030053)	DBX1 (ENSFCAG00000028654)	NAV2 (ENSFCAG00000001793)	ENSFCAG00000022292	E2F8 (ENSFCAG00000010706)	CSRP3 (ENSFCAG00000010704)	ZDHHC13 (ENSFCAG00000010703)	ENSFCAG00000010700 ##15	PTPN5 (ENSFCAG00000002890) #16	IGSF22 (ENSFCAG00000043784)	TMEM86A (ENSFCAG00000015745) #17	SPTY2D1 (ENSFCAG00000015743) #18	ENSFCAG00000048198	MISFA (ENSFCAG00000035445)	UEVLD (ENSFCAG00000015742) #21	TSG101 (ENSFCAG00000028742) #22	LDHC (ENSFCAG00000034264) #23	LDHA (ENSFCAG00000015735) #24	GTF2H1 (ENSFCAG00000007117) #25	HPS5 (ENSFCAG00000011158) #27	ENSFCAG00000042268	ENSFCAG00000046392	SAAL1 (ENSFCAG00000000210)	TPH1 (ENSFCAG00000025053)	SERGEF (ENSFCAG00000000209)	KCNC1 (ENSFCAG00000004974)	MYOD1 (ENSFCAG00000004973)	OTOG (ENSFCAG00000004972)	USH1C (ENSFCAG00000004971)	ABCC8 (ENSFCAG00000004967)	KCNJ11 (ENSFCAG00000007305)
Caniformia	ANCESTRAL SPECIES	25	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.n #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Mustelinae	ANCESTRAL SPECIES	30	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479.e #23	ENSGT00940000153201.j.n #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
American mink	DUPLICATION
American mink	MODERN SPECIES	13	HTATIP2 (ENSNVIG00000017546)	DBX1 (ENSNVIG00000017634)	NAV2 (ENSNVIG00000017681)	ENSNVIG00000018341	E2F8 (ENSNVIG00000018359)	CSRP3 (ENSNVIG00000018395)	ZDHHC13 (ENSNVIG00000018438)	ENSNVIG00000018465 ##15	PTPN5 (ENSNVIG00000018475) #16	IGSF22 (ENSNVIG00000018521)	TM86A (ENSNVIG00000018560) #17	SPTY2D1 (ENSNVIG00000018574) #18	ENSNVIG00000018581	MISFA (ENSNVIG00000018586)	UEVLD (ENSNVIG00000018596) #21	ENSNVIG00000018751 #22	LDHC (ENSNVIG00000018779) #23	ENSNVIG00000018827	TF2H1 (ENSNVIG00000018843) #25	HPS5 (ENSNVIG00000018867) #27	ENSNVIG00000018923	ENSNVIG00000018941	ENSNVIG00000018957	SAAL1 (ENSNVIG00000018995)	TPH1 (ENSNVIG00000019049)	SERGEF (ENSNVIG00000019122)	KCNC1 (ENSNVIG00000019159)	MYOD1 (ENSNVIG00000019177)	OTOG (ENSNVIG00000019193)	USH1C (ENSNVIG00000019256)	ABCC8 (ENSNVIG00000019489)
American mink	MODERN SPECIES	308									ENSNVIG00000006838	GPR137B (ENSNVIG00000006852)	NID1 (ENSNVIG00000006876)	LYST (ENSNVIG00000006945)	GNG4 (ENSNVIG00000007063)	B3GALNT2 (ENSNVIG00000007076)	TBCE (ENSNVIG00000007098)	ENSNVIG00000007226 #22	GGPS1 (ENSNVIG00000007231)	ARID4B (ENSNVIG00000007256)	RBM34 (ENSNVIG00000007398)	TOM20 (ENSNVIG00000007428)	IRF2BP2 (ENSNVIG00000007464)	TARBP1 (ENSNVIG00000007492)	ENSNVIG00000007537	SLC35F3 (ENSNVIG00000007554)
Ferret	MODERN SPECIES	194	SLC6A5 (ENSMPUG00000013929)	PRMT3 (ENSMPUG00000013923)	HTATIP2 (ENSMPUG00000013921)	ENSMPUG00000013918	DBX1 (ENSMPUG00000013914)	NAV2 (ENSMPUG00000013905)	E2F8 (ENSMPUG00000013899)	CSRP3 (ENSMPUG00000013898)	ZDHHC13 (ENSMPUG00000013842)	ENSMPUG00000019449 ##15	PTPN5 (ENSMPUG00000013839) #16	IGSF22 (ENSMPUG00000013835)	TMEM86A (ENSMPUG00000013825) #17	SPTY2D1 (ENSMPUG00000013816) #18	UEVLD (ENSMPUG00000013774) #21	TSG101 (ENSMPUG00000013769) #22	ENSMPUG00000013766 #23	ENSMPUG00000013730 #24	GTF2H1 (ENSMPUG00000013729) #25	HPS5 (ENSMPUG00000013726) #27	ENSMPUG00000013724	ENSMPUG00000013721	SAAL1 (ENSMPUG00000013717)	TPH1 (ENSMPUG00000013571)	SERGEF (ENSMPUG00000013567)	KCNC1 (ENSMPUG00000013565)	MYOD1 (ENSMPUG00000013563)	OTOG (ENSMPUG00000013475)	USH1C (ENSMPUG00000013383)	ABCC8 (ENSMPUG00000013368)	KCNJ11 (ENSMPUG00000019000)
Ursidae	ANCESTRAL SPECIES	2	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Ursus	ANCESTRAL SPECIES	69	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a
Polar bear	MODERN SPECIES	141	SLC6A5 (ENSUMAG00000019945)	PRMT3 (ENSUMAG00000020026)	HTATIP2 (ENSUMAG00000020143)	DBX1 (ENSUMAG00000020160)	NAV2 (ENSUMAG00000020189)	ENSUMAG00000020361	E2F8 (ENSUMAG00000020364)	CSRP3 (ENSUMAG00000020368)	ZDHHC13 (ENSUMAG00000020381)	ENSUMAG00000020470 ##15	PTPN5 (ENSUMAG00000020473) #16	TMEM86A (ENSUMAG00000020480) #17	SPTY2D1 (ENSUMAG00000020482) #18	MISFA (ENSUMAG00000020486)	UEVLD (ENSUMAG00000020491) #21	TSG101 (ENSUMAG00000020496) #22	ENSUMAG00000020503 #23	ENSUMAG00000020508 #23	LDHA (ENSUMAG00000020515) #24	GTF2H1 (ENSUMAG00000020519) #25	ENSUMAG00000020540 #27	ENSUMAG00000020566 #27	ENSUMAG00000020602	ENSUMAG00000020619
American black bear	MODERN SPECIES	1429												SPTY2D1 (ENSUAMG00000019113) #18	MISFA (ENSUAMG00000019114)	ENSUAMG00000019115 #21	ENSUAMG00000019116	TSG101 (ENSUAMG00000019117) #22	ENSUAMG00000019118 #23	ENSUAMG00000019119 #23	LDHA (ENSUAMG00000019120) #24	GTF2H1 (ENSUAMG00000019123) #25	HPS5 (ENSUAMG00000019163) #27
Giant Panda	MODERN SPECIES	7	HTATIP2 (ENSAMEG00000004668)	DBX1 (ENSAMEG00000004660)	ENSAMEG00000029262	NAV2 (ENSAMEG00000004597)	E2F8 (ENSAMEG00000017950)	CSRP3 (ENSAMEG00000017946)	ZDHHC13 (ENSAMEG00000017928)	ENSAMEG00000019312 ##15	PTPN5 (ENSAMEG00000017915) #16	IGSF22 (ENSAMEG00000017913)	TMEM86A (ENSAMEG00000017911) #17	SPTY2D1 (ENSAMEG00000017906) #18	ENSAMEG00000028723	MISFA (ENSAMEG00000017904)	UEVLD (ENSAMEG00000017885) #21	TSG101 (ENSAMEG00000017874) #22	LDHC (ENSAMEG00000017872) #23	ENSAMEG00000017854 #24	GTF2H1 (ENSAMEG00000017836) #25	HPS5 (ENSAMEG00000017819) #27	ENSAMEG00000023602	ENSAMEG00000024218	SAAL1 (ENSAMEG00000018204)	TPH1 (ENSAMEG00000018200)	SERGEF (ENSAMEG00000028965)	KCNC1 (ENSAMEG00000018198)	MYOD1 (ENSAMEG00000018197)	OTOG (ENSAMEG00000003146)	USH1C (ENSAMEG00000003181)	ABCC8 (ENSAMEG00000003026)	KCNJ11 (ENSAMEG00000019510)
Canidae	ANCESTRAL SPECIES	1	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000159617	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.n.j #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a.f #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Red fox	MODERN SPECIES	266				ENSVVUG00000001719	ENSVVUG00000001736	E2F8 (ENSVVUG00000001762)	CSRP3 (ENSVVUG00000001781)	ZDHHC13 (ENSVVUG00000001822)	ENSVVUG00000002374 ##15	PTPN5 (ENSVVUG00000002423) #16	IGSF22 (ENSVVUG00000002474)	TMEM86A (ENSVVUG00000002500) #17	SPTY2D1 (ENSVVUG00000002505) #18	ENSVVUG00000002512	UEVLD (ENSVVUG00000002533) #21	TSG101 (ENSVVUG00000002567) #22	ENSVVUG00000002657	LDHC (ENSVVUG00000002685) #23	ENSVVUG00000002716	ENSVVUG00000002728 #24	GTF2H1 (ENSVVUG00000002738) #25	HPS5 (ENSVVUG00000002771) #27	ENSVVUG00000004133
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00390000015930.ab	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.n.j #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a.f #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.n.a	ENSGT00390000004737.b.a.o.a.a.a.a.c	ENSGT00390000004737.b.a.o.a.a.a.b.m	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Dingo	DUPLICATION
Dingo	MODERN SPECIES	231	SLC6A5 (ENSCAFG00020019350)	PRMT3 (ENSCAFG00020019297)	HTATIP2 (ENSCAFG00020019284)	DBX1 (ENSCAFG00020019280)	NAV2 (ENSCAFG00020019081)	ENSCAFG00020019024	E2F8 (ENSCAFG00020019000)	CSRP3 (ENSCAFG00020018980)	ZDHHC13 (ENSCAFG00020018891)	ENSCAFG00020018860 ##15	PTPN5 (ENSCAFG00020018854) #16	TMEM86A (ENSCAFG00020018853) #17	SPTY2D1 (ENSCAFG00020018850) #18	MISFA (ENSCAFG00020018848)	UEVLD (ENSCAFG00020018838) #21	ENSCAFG00020018792 #22	ENSCAFG00020018780	LDHC (ENSCAFG00020018722) #23	ENSCAFG00020018694 #24	GTF2H1 (ENSCAFG00020018689) #25	HPS5 (ENSCAFG00020018444) #27	ENSCAFG00020018420	ENSCAFG00020018417	ENSCAFG00020018412	ENSCAFG00020018410	ENSCAFG00020018409	SAAL1 (ENSCAFG00020018406)	TPH1 (ENSCAFG00020018391)	SERGEF (ENSCAFG00020018379)	KCNC1 (ENSCAFG00020018373)	MYOD1 (ENSCAFG00020018371)
Dingo	MODERN SPECIES	398	ENSCAFG00020004700	HSPD1 (ENSCAFG00020004710)	ENSCAFG00020004741	COQ10B (ENSCAFG00020004745)	SF3B1 (ENSCAFG00020004750)	ANKRD44 (ENSCAFG00020004766)	PGAP1 (ENSCAFG00020004924)	GTF3C3 (ENSCAFG00020004945)	CCDC150 (ENSCAFG00020004958)	ENSCAFG00020004995	ENSCAFG00020005006	ENSCAFG00020005013	STK17B (ENSCAFG00020005103)	DNAH7 (ENSCAFG00020005129)	SLC39A10 (ENSCAFG00020005340)	ENSCAFG00020005359 #22	TMEFF2 (ENSCAFG00020005361)	CAVIN2 (ENSCAFG00020005369)	NABP1 (ENSCAFG00020005380)	MYO1B (ENSCAFG00020005407)	ENSCAFG00020005473	ENSCAFG00020005479	STAT1 (ENSCAFG00020005482)	GLS (ENSCAFG00020005567)	NAB1 (ENSCAFG00020006552)	NEMP2 (ENSCAFG00020006586)	MFSD6 (ENSCAFG00020006595)	INPP1 (ENSCAFG00020006605)	HIBCH (ENSCAFG00020006616)	C2orf88 (ENSCAFG00020006638)	MSTN (ENSCAFG00020006640)
Dog	DUPLICATION
Dog	MODERN SPECIES	13	DBX1 (ENSCAFG00845021224)	ENSCAFG00845021177	ENSCAFG00845021130	NAV2 (ENSCAFG00845019323)	E2F8 (ENSCAFG00845018868)	CSRP3 (ENSCAFG00845018814)	ZDHHC13 (ENSCAFG00845018721)	MRGPRX (ENSCAFG00845018660) ##15	IGSF22 (ENSCAFG00845018417)	TMEM86A (ENSCAFG00845018325) #17	SPTY2D1 (ENSCAFG00845018254) #18	ENSCAFG00845018219	MISFA (ENSCAFG00845018190)	ENSCAFG00845017589 #16	UEVLD (ENSCAFG00845017016) #21	TSG101 (ENSCAFG00845016679) #22	LDHC (ENSCAFG00845016401) #23	ENSCAFG00845016146 #24	ENSCAFG00845016105	GTF2H1 (ENSCAFG00845016048) #25	HPS5 (ENSCAFG00845015814) #27	ENSCAFG00845015612	SAA1 (ENSCAFG00845015494)	ENSCAFG00845015397	SAAL1 (ENSCAFG00845015248)	TPH1 (ENSCAFG00845015143)	SERGEF (ENSCAFG00845015032)	KCNC1 (ENSCAFG00845014972)	MYOD1 (ENSCAFG00845014938)	OTOG (ENSCAFG00845014610)	USH1C (ENSCAFG00845014411)
Dog	MODERN SPECIES	30	HSPE1 (ENSCAFG00845027216)	HSPD1 (ENSCAFG00845027075)	SF3B1 (ENSCAFG00845026632)	COQ10B (ENSCAFG00845026337)	ENSCAFG00845026214	ANKRD44 (ENSCAFG00845025354)	PGAP1 (ENSCAFG00845024751)	C2orf66 (ENSCAFG00845024629)	GTF3C3 (ENSCAFG00845024524)	CCDC150 (ENSCAFG00845023218)	ENSCAFG00845022790	HECW2 (ENSCAFG00845022474)	STK17B (ENSCAFG00845022333)	DNAH7 (ENSCAFG00845021093)	SLC39A10 (ENSCAFG00845020786)	ENSCAFG00845020706 #22	TMEFF2 (ENSCAFG00845020476)	CAVIN2 (ENSCAFG00845020388)	NABP1 (ENSCAFG00845020299)	MYO1B (ENSCAFG00845019502)	STAT4 (ENSCAFG00845026634)	STAT1 (ENSCAFG00845025854)	GLS (ENSCAFG00845025512)	ENSCAFG00845025429	NAB1 (ENSCAFG00845025364)	NEMP2 (ENSCAFG00845025264)	MFSD6 (ENSCAFG00845025050)	INPP1 (ENSCAFG00845024963)	HIBCH (ENSCAFG00845024697)	MSTN (ENSCAFG00845024446)	ORMDL1 (ENSCAFG00845024320)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00950000182989.D.a.a.g.b	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00950000182989.D.a.a.g.b	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242.a	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Microbat	MODERN SPECIES	1061	ENSMLUG00000016135	ENSMLUG00000023303 ##15	ENSMLUG00000006167 ##15	ENSMLUG00000024710 ##15	ENSMLUG00000022292 ##15	ENSMLUG00000027629 ##15	ENSMLUG00000011979	ENSMLUG00000024671 ##15	ENSMLUG00000028143 ##15	ENSMLUG00000024241 ##15	PTPN5 (ENSMLUG00000016411) #16	IGSF22 (ENSMLUG00000016399)	TMEM86A (ENSMLUG00000016391) #17	ENSMLUG00000027941 #18	UEVLD (ENSMLUG00000016358) #21	TSG101 (ENSMLUG00000016353) #22	LDHC (ENSMLUG00000016348) #23	ENSMLUG00000016343 #24	GTF2H1 (ENSMLUG00000016329) #25	HPS5 (ENSMLUG00000016318) #27	ENSMLUG00000008051	ENSMLUG00000016314	ENSMLUG00000028709	SAAL1 (ENSMLUG00000008022)	TPH1 (ENSMLUG00000008011)	ENSMLUG00000007974	KCNC1 (ENSMLUG00000007950)	MYOD1 (ENSMLUG00000007940)	ENSMLUG00000029772	OTOG (ENSMLUG00000002545)	USH1C (ENSMLUG00000002529)
Greater horseshoe bat	MODERN SPECIES	2	DBX1 (ENSRFEG00010015442)	NAV2 (ENSRFEG00010015693)	ENSRFEG00010018702	E2F8 (ENSRFEG00010018740)	CSRP3 (ENSRFEG00010018867)	ZDHHC13 (ENSRFEG00010018909)	ENSRFEG00010018972 ##15	ENSRFEG00010019036 ##15	ENSRFEG00010019099 ##15	ENSRFEG00010019112 ##15	PTPN5 (ENSRFEG00010019203) #16	IGSF22 (ENSRFEG00010019473)	TMEM86A (ENSRFEG00010019663) #17	SPTY2D1 (ENSRFEG00010019685) #18	ENSRFEG00010019723	ENSRFEG00010019776 #22	ENSRFEG00010019955	LDHC (ENSRFEG00010020017) #23	ENSRFEG00010020271 #24	GTF2H1 (ENSRFEG00010020416) #25	HPS5 (ENSRFEG00010020475) #27	ENSRFEG00010020515	ENSRFEG00010020556	ENSRFEG00010020584	ENSRFEG00010020599	SAAL1 (ENSRFEG00010020641)	TPH1 (ENSRFEG00010020684)	SERGEF (ENSRFEG00010020728)	ENSRFEG00010020796	KCNC1 (ENSRFEG00010020809)	MYOD1 (ENSRFEG00010020830)
Megabat	MODERN SPECIES	1666														SPTY2D1 (ENSPVAG00000007215) #18	UEVLD (ENSPVAG00000007211) #21	TSG101 (ENSPVAG00000007210) #22	LDHAL6A (ENSPVAG00000007209)	LDHC (ENSPVAG00000007207) #23	LDHA (ENSPVAG00000007206) #24	GTF2H1 (ENSPVAG00000007205) #25	HPS5 (ENSPVAG00000007202) #27
Equus	ANCESTRAL SPECIES	40	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.e.a.a ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b.f.a.b	ENSGT00390000004737.b.a.o.a.a.b.fb.a	ENSGT00390000004737.b.a.o.a.a.b.eb.b	ENSGT01030000234639.A.b.a.b.a.b.b.e.b.a ##15	ENSGT00390000004737.b.a.o.a.b.e	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Donkey	MODERN SPECIES	12	SLC6A5 (ENSEASG00005013072)	PRMT3 (ENSEASG00005013043)	HTATIP2 (ENSEASG00005036432)	DBX1 (ENSEASG00005013038)	ENSEASG00005035973	NAV2 (ENSEASG00005013028)	E2F8 (ENSEASG00005013023)	CSRP3 (ENSEASG00005035822)	ZDHHC13 (ENSEASG00005013019)	ENSEASG00005013011 ##15	PTPN5 (ENSEASG00005012958) #16	TMEM86A (ENSEASG00005030607) #17	SPTY2D1 (ENSEASG00005012954) #18	MISFA (ENSEASG00005032488)	UEVLD (ENSEASG00005012948) #21	TSG101 (ENSEASG00005012943) #22	LDHC (ENSEASG00005012917) #23	LDHA (ENSEASG00005012914) #24	GTF2H1 (ENSEASG00005012908) #25	HPS5 (ENSEASG00005012900) #27	ENSEASG00005026588	ENSEASG00005035302	ENSEASG00005035911	ENSEASG00005037086	ENSEASG00005012966 ##15	ENSEASG00005031856	ENSEASG00005034187	ENSEASG00005030092	ENSEASG00005023828	ENSEASG00005007576	ENSEASG00005007574
Horse	MODERN SPECIES	28	SLC6A5 (ENSECAG00000022340)	PRMT3 (ENSECAG00000021124)	HTATIP2 (ENSECAG00000050787)	ENSECAG00000041222	DBX1 (ENSECAG00000019994)	NAV2 (ENSECAG00000017807)	ENSECAG00000037265	MGRG1 (ENSECAG00000003099) ##15	ENSECAG00000001949 ##15	ENSECAG00000039541 ##15	PTPN5 (ENSECAG00000011842) #16	TMEM86A (ENSECAG00000011358) #17	SPTY2D1 (ENSECAG00000011055) #18	ENSECAG00000050200	UEVLD (ENSECAG00000009898) #21	TSG101 (ENSECAG00000004362) #22	LDHC (ENSECAG00000022126) #23	LDHA (ENSECAG00000020669) #24	GTF2H1 (ENSECAG00000019056) #25	HPS5 (ENSECAG00000015720) #27	ENSECAG00000036499	ENSECAG00000048632	ENSECAG00000034393 ##15	ENSECAG00000013758	ENSECAG00000030592	ENSECAG00000032096	ENSECAG00000011404	SAAL1 (ENSECAG00000009781)	SERGEF (ENSECAG00000005626)	SERGEF (ENSECAG00000056096)	KCNC1 (ENSECAG00000002236)
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Elephant	MODERN SPECIES	209	SLC6A5 (ENSLAFG00000015106)	PRMT3 (ENSLAFG00000018704)	HTATIP2 (ENSLAFG00000018703)	DBX1 (ENSLAFG00000007378)	NAV2 (ENSLAFG00000007364)	E2F8 (ENSLAFG00000022713)	CSRP3 (ENSLAFG00000018473)	ZDHHC13 (ENSLAFG00000014788)	ENSLAFG00000010977 #15	ENSLAFG00000032037 #15	PTPN5 (ENSLAFG00000013689) #16	IGSF22 (ENSLAFG00000031965)	TMEM86A (ENSLAFG00000002024) #17	SPTY2D1 (ENSLAFG00000003686) #18	UEVLD (ENSLAFG00000020671) #21	TSG101 (ENSLAFG00000003682) #22	LDHAL6B (ENSLAFG00000003680)	ENSLAFG00000011307 #24	GTF2H1 (ENSLAFG00000011296) #25	HPS5 (ENSLAFG00000011289) #27	ENSLAFG00000027166	ENSLAFG00000007862	SERGEF (ENSLAFG00000018367)	KCNC1 (ENSLAFG00000018355)	MYOD1 (ENSLAFG00000018353)	OTOG (ENSLAFG00000004882)	USH1C (ENSLAFG00000022470)	ABCC8 (ENSLAFG00000007014)	KCNJ11 (ENSLAFG00000031878)	NUCB2 (ENSLAFG00000007349)	PIK3C2A (ENSLAFG00000003710)
Hyrax	MODERN SPECIES	5049															UEVLD (ENSPCAG00000010333) #21	TSG101 (ENSPCAG00000010234) #22	ENSPCAG00000010172
Tenrec	MODERN SPECIES	7113															ENSETEG00000007522 #21	TSG101 (ENSETEG00000007520) #22	ENSETEG00000007517	ENSETEG00000007512 #23	LDHA (ENSETEG00000007508) #24
Xenarthra	ANCESTRAL SPECIES	474														ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Armadillo	MODERN SPECIES	4729													ENSDNOG00000034564	UEVLD (ENSDNOG00000049358) #21	ENSDNOG00000043057	TSG101 (ENSDNOG00000004191) #22	ENSDNOG00000018915 #24	GTF2H1 (ENSDNOG00000008931) #25	HPS5 (ENSDNOG00000008878) #27	ENSDNOG00000037533	ENSDNOG00000042098	SAAL1 (ENSDNOG00000046307)	TPH1 (ENSDNOG00000037660)	SERGEF (ENSDNOG00000001225)
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01090000260017.c.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a.a.b	ENSGT01100000263499.a.c.b.c.a.b.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT01030000235549	ENSGT00940000153201.i.a ##24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a.a.b.a	ENSGT01100000263499.a.c.b.c.a.b.a.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT01030000235549	ENSGT00940000153201.i.a ##24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a.a.a.b.a	ENSGT01100000263499.a.c.b.c.a.a.a.a.a.a.b	ENSGT01100000263499.a.c.b.c.a.a.a.b.a	ENSGT01100000263499.a.c.b.c.a.b.a.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT01030000235549.a.a	ENSGT00940000161479 #23	ENSGT01030000235549.a.b	ENSGT00940000153201.i.a.b ##24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Common wonbat	MODERN SPECIES	1195						ENSVURG00010019432	ENSVURG00010019438	ENSVURG00010019455 #17	ENSVURG00010019460 #16	ENSVURG00010019472 #16	IGSF22 (ENSVURG00010019484)	ENSVURG00010019496 #17	ENSVURG00010000119	ENSVURG00010000142	ENSVURG00010000164	TSG101 (ENSVURG00010000198) #22	ENSVURG00010000220	LDHC (ENSVURG00010000232) #23	ENSVURG00010000245	ENSVURG00010000276 ##24	ENSVURG00010000430 #25	HPS5 (ENSVURG00010000530) #27	ENSVURG00010000580
koala	MODERN SPECIES	108	ENSPCIG00000036335	ENSPCIG00000022847	ENSPCIG00000032860	ENSPCIG00000014045	ENSPCIG00000036344	ENSPCIG00000036201	ENSPCIG00000037355	ENSPCIG00000035433	ENSPCIG00000036670	PTPN5 (ENSPCIG00000014018) #16	TMEM86A (ENSPCIG00000014011) #17	SPTY2D1 (ENSPCIG00000014008) #18	ENSPCIG00000037419	MISFA (ENSPCIG00000014006)	UEVLD (ENSPCIG00000014004) #21	TSG101 (ENSPCIG00000013997) #22	ENSPCIG00000013992	LDHC (ENSPCIG00000013990) #23	ENSPCIG00000013770 ##24	GTF2H1 (ENSPCIG00000013760) #25	HPS5 (ENSPCIG00000013753) #27	ENSPCIG00000033997	SAAL1 (ENSPCIG00000013745)	TPH1 (ENSPCIG00000013741)	ENSPCIG00000013737	KCNC1 (ENSPCIG00000013732)	MYOD1 (ENSPCIG00000018402)	USH1C (ENSPCIG00000013650)	ABCC8 (ENSPCIG00000013643)	ENSPCIG00000013127	ENSPCIG00000035386
Wallaby	MODERN SPECIES	7418																TSG101 (ENSMEUG00000011719) #22	ENSMEUG00000011689
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000030105	ENSSHAG00000023198	ENSSHAG00000022848	ENSSHAG00000029142	ENSSHAG00000020995	ENSSHAG00000026354	ENSSHAG00000025090	ENSSHAG00000027551	ENSSHAG00000014824 #16	IGSF22 (ENSSHAG00000014910)	TMEM86A (ENSSHAG00000022231) #17	ENSSHAG00000024232	SPTY2D1 (ENSSHAG00000015061) #18	ENSSHAG00000023698	ENSSHAG00000022059	TSG101 (ENSSHAG00000015267) #22	ENSSHAG00000029476	LDHC (ENSSHAG00000030723) #23	ENSSHAG00000025930 ##24	GTF2H1 (ENSSHAG00000015946) #25	HPS5 (ENSSHAG00000016026) #27	SAAL1 (ENSSHAG00000030904)	TPH1 (ENSSHAG00000016519)	ENSSHAG00000023659	KCNC1 (ENSSHAG00000022035)	MYOD1 (ENSSHAG00000017220)	OTOG (ENSSHAG00000017355)	USH1C (ENSSHAG00000017497)	ABCC8 (ENSSHAG00000017597)	KCNJ11 (ENSSHAG00000022074)	ENSSHAG00000028371
Opossum	DUPLICATION
Opossum	MODERN SPECIES	4	ENSMODG00000037596	ENSMODG00000045857	ENSMODG00000049690	ENSMODG00000046771	ENSMODG00000036969	ENSMODG00000037768	ENSMODG00000036555	ENSMODG00000046681	PTPN5 (ENSMODG00000006327) #16	IGSF22 (ENSMODG00000006354)	TMEM86A (ENSMODG00000006364) #17	ENSMODG00000006373	ENSMODG00000037593	ENSMODG00000049605	ENSMODG00000006389	ENSMODG00000006410 #22	ENSMODG00000040672	ENSMODG00000006509 #23	LDHA (ENSMODG00000006522) #24	ENSMODG00000006540 #25	HPS5 (ENSMODG00000006574) #27	ENSMODG00000024617	SAAL1 (ENSMODG00000006679)	TPH1 (ENSMODG00000006704)	ENSMODG00000006721	KCNC1 (ENSMODG00000006734)	MYOD1 (ENSMODG00000006749)	OTOG (ENSMODG00000006791)	USH1C (ENSMODG00000006841)	ABCC8 (ENSMODG00000006995)	KCNJ11 (ENSMODG00000007004)
Opossum	MODERN SPECIES	3	ENSMODG00000047589	ENSMODG00000039434	HYLS1 (ENSMODG00000004232)	PUS3 (ENSMODG00000004222)	DDX25 (ENSMODG00000004275)	CDON (ENSMODG00000004499)	RPUSD4 (ENSMODG00000004521)	FAM118B (ENSMODG00000004550)	SRPRA (ENSMODG00000004576)	FOXRED1 (ENSMODG00000004595)	ENSMODG00000004601	DCPS (ENSMODG00000004617)	ST3GAL4 (ENSMODG00000004657)	KIRREL3 (ENSMODG00000004676)	ENSMODG00000004696	ENSMODG00000044777 #22	ETS1 (ENSMODG00000004730)	FLI1 (ENSMODG00000004763)	KCNJ1 (ENSMODG00000004768)	ENSMODG00000004783	ARHGAP32 (ENSMODG00000004859)	ENSMODG00000049089	BARX2 (ENSMODG00000004873)	TMEM45B (ENSMODG00000004890)	NFRKB (ENSMODG00000004958)	PRDM10 (ENSMODG00000004979)	ENSMODG00000024204	APLP2 (ENSMODG00000005040)	ST14 (ENSMODG00000005064)	ENSMODG00000005080	ADAMTS8 (ENSMODG00000005108)
Platypus	MODERN SPECIES	14	PPP2R5B (ENSOANG00000044335)	ATG2A (ENSOANG00000043855)	EHD1 (ENSOANG00000050176)	CDC42BPG (ENSOANG00000008357)	MEN1 (ENSOANG00000049752)	MAP4K2 (ENSOANG00000009273)	SF1 (ENSOANG00000002909)	PYGM (ENSOANG00000013714)	RASGRP2 (ENSOANG00000007479)	NRXN2 (ENSOANG00000045579)	ENSOANG00000048677	ENSOANG00000039525 #16	TMEM86A (ENSOANG00000049158) #17	SPTY2D1 (ENSOANG00000051208) #18	UEVLD (ENSOANG00000050347) #21	TSG101 (ENSOANG00000008368) #22	ENSOANG00000008367 #24	LDHA (ENSOANG00000048733) #24	GTF2H1 (ENSOANG00000014982) #25	HPS5 (ENSOANG00000044228) #27	ENSOANG00000044149	ENSOANG00000000595	SAAL1 (ENSOANG00000000809)	ENSOANG00000000811	TPH1 (ENSOANG00000050270)	ENSOANG00000044323	KCNC1 (ENSOANG00000003052)	ENSOANG00000047737	OTOG (ENSOANG00000010676)	ENSOANG00000007679	ABCC8 (ENSOANG00000007680)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626
Archosauria	ANCESTRAL SPECIES	5	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Australian saltwater crocodile	MODERN SPECIES	64	TSSC4 (ENSCPRG00005017025)	TRPM5 (ENSCPRG00005017030)	KCNQ1 (ENSCPRG00005017043)	SLC22A18 (ENSCPRG00005017050)	PHLDA2 (ENSCPRG00005017053)	NAP1L4 (ENSCPRG00005017058)	CARS1 (ENSCPRG00005017107)	ENSCPRG00005017195	OSBPL5 (ENSCPRG00005017206)	ENSCPRG00005017213	PTPRJ (ENSCPRG00005017215)	PTPN5 (ENSCPRG00005017224) #16	IGSF22 (ENSCPRG00005017227)	TMEM86A (ENSCPRG00005017229) #17	SPTY2D1 (ENSCPRG00005017230) #18	TSG101 (ENSCPRG00005017234) #22	ENSCPRG00005017243	LDHA (ENSCPRG00005017245) #24	GTF2H1 (ENSCPRG00005017249) #25	HPS5 (ENSCPRG00005017251) #27	ENSCPRG00005017256	ENSCPRG00005000214	SAAL1 (ENSCPRG00005000231)	TPH1 (ENSCPRG00005000260)	SERGEF (ENSCPRG00005000274)	KCNC1 (ENSCPRG00005000411)	MYOD1 (ENSCPRG00005000428)	ENSCPRG00005000446	OTOG (ENSCPRG00005000529)	USH1C (ENSCPRG00005000582)	ABCC8 (ENSCPRG00005000714)
Aves	ANCESTRAL SPECIES	2	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Neognathae	ANCESTRAL SPECIES	4	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Anatidae	ANCESTRAL SPECIES	9	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818.z #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a.a	ENSGT00960000189946
Pink-footed goose	MODERN SPECIES	342												PTPN5 (ENSABRG00000018803) #16	TMEM86A (ENSABRG00000018851) #17	SPTY2D1 (ENSABRG00000018855) #18	UEVLD (ENSABRG00000018858) #21	TSG101 (ENSABRG00000018867) #22	LDHA (ENSABRG00000018899) #24	GTF2H1 (ENSABRG00000018911) #25	HPS5 (ENSABRG00000018923) #27	ENSABRG00000018930	SAAL1 (ENSABRG00000018937)	ENSABRG00000018950	ENSABRG00000018968
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333.l	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b.a	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Japanese quail	MODERN SPECIES	23	OTOG (ENSCJPG00005010752)	ENSCJPG00005010753	MYOD1 (ENSCJPG00005010754)	ENSCJPG00005010755	ENSCJPG00005010756	ENSCJPG00005010757	NAP1L4 (ENSCJPG00005010758)	CARS1 (ENSCJPG00005010761)	ENSCJPG00005010762	OSBPL5 (ENSCJPG00005010764)	ENSCJPG00005010766	PTPN5 (ENSCJPG00005010769) #16	TMEM86A (ENSCJPG00005010770) #17	SPTY2D1 (ENSCJPG00005010771) #18	ENSCJPG00005010772	TSG101 (ENSCJPG00005010773) #22	LDHA (ENSCJPG00005010774) #24	GTF2H1 (ENSCJPG00005010775) #25	HPS5 (ENSCJPG00005010777) #27	ENSCJPG00005010778	SAAL1 (ENSCJPG00005010779)	TPH1 (ENSCJPG00005010780)	SERGEF (ENSCJPG00005010791)	KCNC1 (ENSCJPG00005010792)	ENSCJPG00005010796	ENSCJPG00005010797	PRR5L (ENSCJPG00005010799)	TRAF6 (ENSCJPG00005010800)	RAG1 (ENSCJPG00005010801)	IFTAP (ENSCJPG00005010802)	LRRC4C (ENSCJPG00005010806)
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Kakapo	MODERN SPECIES	21	TSSC4 (ENSSHBG00005003525)	TRPM5 (ENSSHBG00005003544)	KCNQ1 (ENSSHBG00005003587)	ENSSHBG00005003643	SLC22A18 (ENSSHBG00005003653)	PHLDA2 (ENSSHBG00005003660)	NAP1L4 (ENSSHBG00005003673)	CARS1 (ENSSHBG00005003699)	ENSSHBG00005003742	OSBPL5 (ENSSHBG00005003762)	ENSSHBG00005003781	PTPN5 (ENSSHBG00005003830) #16	TMEM86A (ENSSHBG00005003850) #17	SPTY2D1 (ENSSHBG00005003868) #18	UEVLD (ENSSHBG00005003887) #21	TSG101 (ENSSHBG00005003912) #22	LDHA (ENSSHBG00005003929) #24	GTF2H1 (ENSSHBG00005003950) #25	HPS5 (ENSSHBG00005003984) #27	ENSSHBG00005004000	SAAL1 (ENSSHBG00005004015)	TPH1 (ENSSHBG00005004036)	SERGEF (ENSSHBG00005004045)	KCNC1 (ENSSHBG00005004052)	MYOD1 (ENSSHBG00005004057)	ENSSHBG00005004063	OTOG (ENSSHBG00005004083)	USH1C (ENSSHBG00005000692)	ABCC8 (ENSSHBG00005000788)	KCNJ11 (ENSSHBG00005000811)	NUCB2 (ENSSHBG00005000815)
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066.t #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066.t #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066.t #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00390000001927.a
Common canary	MODERN SPECIES	3	CD81 (ENSSCAG00000004605)	TSSC4 (ENSSCAG00000004613)	TRPM5 (ENSSCAG00000004629)	KCNQ1 (ENSSCAG00000004719)	SLC22A18 (ENSSCAG00000004753)	PHLDA2 (ENSSCAG00000004757)	NAP1L4 (ENSSCAG00000004764)	CARS1 (ENSSCAG00000004788)	ENSSCAG00000004800	OSBPL5 (ENSSCAG00000004823)	ENSSCAG00000004876	ENSSCAG00000004917	PTPN5 (ENSSCAG00000004927) #16	TMEM86A (ENSSCAG00000004939) #17	SPTY2D1 (ENSSCAG00000004949) #18	TSG101 (ENSSCAG00000004960) #22	ENSSCAG00000004978	LDHA (ENSSCAG00000004984) #24	GTF2H1 (ENSSCAG00000004990) #25	HPS5 (ENSSCAG00000005001) #27	ENSSCAG00000005016	SAAL1 (ENSSCAG00000005025)	TPH1 (ENSSCAG00000005038)	SERGEF (ENSSCAG00000005048)	KCNC1 (ENSSCAG00000005066)	MYOD1 (ENSSCAG00000005079)	ENSSCAG00000005088	OTOG (ENSSCAG00000005097)	USH1C (ENSSCAG00000005121)	ABCC8 (ENSSCAG00000005141)	KCNJ11 (ENSSCAG00000005168)
Zebra finch	MODERN SPECIES	27	CD81 (ENSTGUG00000009259)	TRPM5 (ENSTGUG00000009187)	KCNQ1 (ENSTGUG00000009167)	ENSTGUG00000024243	SLC22A18 (ENSTGUG00000009164)	PHLDA2 (ENSTGUG00000020873)	NAP1L4 (ENSTGUG00000009146)	CARS1 (ENSTGUG00000009099)	ENSTGUG00000023289	OSBPL5 (ENSTGUG00000009038)	ENSTGUG00000009007	PTPN5 (ENSTGUG00000008983) #16	TMEM86A (ENSTGUG00000025382) #17	SPTY2D1 (ENSTGUG00000008968) #18	ENSTGUG00000008943	TSG101 (ENSTGUG00000008935) #22	LDHA (ENSTGUG00000008930) #24	ENSTGUG00000008904 #25	HPS5 (ENSTGUG00000008872) #27	ENSTGUG00000025044	SAAL1 (ENSTGUG00000008863)	TPH1 (ENSTGUG00000008841)	SERGEF (ENSTGUG00000008830)	KCNC1 (ENSTGUG00000008821)	MYOD1 (ENSTGUG00000008814)	ENSTGUG00000008813	OTOG (ENSTGUG00000008789)	USH1C (ENSTGUG00000008748)	ABCC8 (ENSTGUG00000008682)	KCNJ11 (ENSTGUG00000008677)	NUCB2 (ENSTGUG00000008639)
Medium ground finch	MODERN SPECIES	140	TRPM5 (ENSGFOG00000014382)	KCNQ1 (ENSGFOG00000014379)	SLC22A18 (ENSGFOG00000014376)	PHLDA2 (ENSGFOG00000014374)	NAP1L4 (ENSGFOG00000014365)	CARS1 (ENSGFOG00000014356)	ENSGFOG00000014350	OSBPL5 (ENSGFOG00000014344)	ENSGFOG00000014341	ENSGFOG00000014338	PTPN5 (ENSGFOG00000014334) #16	TMEM86A (ENSGFOG00000014331) #17	SPTY2D1 (ENSGFOG00000014327) #18	UEVLD (ENSGFOG00000014324) #21	ENSGFOG00000014319	TSG101 (ENSGFOG00000014316) #22	LDHA (ENSGFOG00000014313) #24	GTF2H1 (ENSGFOG00000014308) #25	HPS5 (ENSGFOG00000014302) #27	SAAL1 (ENSGFOG00000014301)	TPH1 (ENSGFOG00000014298)	SERGEF (ENSGFOG00000014296)
Great tit	MODERN SPECIES	25	TSPAN32 (ENSPMJG00000009317)	CD81 (ENSPMJG00000009311)	TRPM5 (ENSPMJG00000009294)	KCNQ1 (ENSPMJG00000009231)	SLC22A18 (ENSPMJG00000009172)	PHLDA2 (ENSPMJG00000009169)	NAP1L4 (ENSPMJG00000009153)	CARS1 (ENSPMJG00000009119)	ENSPMJG00000009118	OSBPL5 (ENSPMJG00000009085)	ENSPMJG00000008719	PTPN5 (ENSPMJG00000008706) #16	TMEM86A (ENSPMJG00000008704) #17	SPTY2D1 (ENSPMJG00000008684) #18	ENSPMJG00000008681	TSG101 (ENSPMJG00000008680) #22	LDHA (ENSPMJG00000008676) #24	GTF2H1 (ENSPMJG00000008670) #25	HPS5 (ENSPMJG00000008665) #27	SAAL1 (ENSPMJG00000008652)	TPH1 (ENSPMJG00000008649)	SERGEF (ENSPMJG00000008648)	KCNC1 (ENSPMJG00000008627)	MYOD1 (ENSPMJG00000008625)	ENSPMJG00000008624	OTOG (ENSPMJG00000008606)	USH1C (ENSPMJG00000008603)	ABCC8 (ENSPMJG00000008592)	KCNJ11 (ENSPMJG00000008589)	NUCB2 (ENSPMJG00000008588)	PIK3C2A (ENSPMJG00000008586)
African ostrich	MODERN SPECIES	408																TSG101 (ENSSCUG00000007436) #22	LDHA (ENSSCUG00000007434) #24	GTF2H1 (ENSSCUG00000007432) #25	HPS5 (ENSSCUG00000007427) #27	ENSSCUG00000007424	SAAL1 (ENSSCUG00000007419)	TPH1 (ENSSCUG00000007415)	SERGEF (ENSSCUG00000007414)	KCNC1 (ENSSCUG00000007411)	ENSSCUG00000007406	OTOG (ENSSCUG00000007368)	USH1C (ENSSCUG00000007344)	ABCC8 (ENSSCUG00000007324)	KCNJ11 (ENSSCUG00000007310)	NUCB2 (ENSSCUG00000007308)	PIK3C2A (ENSSCUG00000007303)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Chinese turtle	MODERN SPECIES	1883	IFT25 (ENSPSIG00000002938)	ENSPSIG00000002934	YIPF1 (ENSPSIG00000002904)	NDC1 (ENSPSIG00000002847)	GLIS1 (ENSPSIG00000002846)	DMRTB1 (ENSPSIG00000002843)	ENSPSIG00000002840	ENSPSIG00000000496	PTPRJ (ENSPSIG00000002809)	ENSPSIG00000002805	PTPN5 (ENSPSIG00000002727) #16	IGSF22 (ENSPSIG00000002677)	TMEM86A (ENSPSIG00000002671) #17	SPTY2D1 (ENSPSIG00000002656) #18	ENSPSIG00000002651	TSG101 (ENSPSIG00000002634) #22	LDHA (ENSPSIG00000002611) #24	GTF2H1 (ENSPSIG00000002597) #25	HPS5 (ENSPSIG00000002586) #27	SAAL1 (ENSPSIG00000002551)	TPH1 (ENSPSIG00000002537)	KCNC1 (ENSPSIG00000002530)	ENSPSIG00000002528
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626.c	ENSGT00980000200162	ENSGT00940000156626.d
Emydidae	ANCESTRAL SPECIES	10	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626.d	ENSGT00940000156626.c	ENSGT00990000203615.a.a.a.b
Three-toed box turtle	MODERN SPECIES	346					SLC22A18 (ENSTMTG00000004585)	PHLDA2 (ENSTMTG00000004570)	NAP1L4 (ENSTMTG00000004392)	CARS1 (ENSTMTG00000003616)	ENSTMTG00000003489	OSBPL5 (ENSTMTG00000003425)	PTPN5 (ENSTMTG00000003391) #16	IGSF22 (ENSTMTG00000023046)	TMEM86A (ENSTMTG00000023043) #17	SPTY2D1 (ENSTMTG00000023041) #18	ENSTMTG00000023039	TSG101 (ENSTMTG00000023038) #22	LDHA (ENSTMTG00000023037) #24	GTF2H1 (ENSTMTG00000023035) #25	HPS5 (ENSTMTG00000023014) #27	SAAL1 (ENSTMTG00000022994)	TPH1 (ENSTMTG00000022992)	SERGEF (ENSTMTG00000022991)	KCNC1 (ENSTMTG00000022989)	MYOD1 (ENSTMTG00000022988)	ENSTMTG00000022987	OTOG (ENSTMTG00000022982)	USH1C (ENSTMTG00000022976)	ENSTMTG00000022812	ENSTMTG00000022696
painted turtle	MODERN SPECIES	2418	ENSCPBG00000007381	TH (ENSCPBG00000007371)	ENSCPBG00000007364	ENSCPBG00000007357	ENSCPBG00000007352	CARS1 (ENSCPBG00000007331)	ENSCPBG00000007313	ENSCPBG00000007311	OSBPL5 (ENSCPBG00000007282)	PTPRJ (ENSCPBG00000007198)	PTPN5 (ENSCPBG00000007151) #16	IGSF22 (ENSCPBG00000007119)	TMEM86A (ENSCPBG00000007109) #17	SPTY2D1 (ENSCPBG00000007099) #18	ENSCPBG00000007091	TSG101 (ENSCPBG00000007076) #22	LDHA (ENSCPBG00000007063) #24	GTF2H1 (ENSCPBG00000007052) #25	HPS5 (ENSCPBG00000007026) #27	ENSCPBG00000007015	ENSCPBG00000007009	ENSCPBG00000007002
Testudinidae	ANCESTRAL SPECIES	2	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01000000216403	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.fb.b.b	ENSGT00390000004737.b.a.o.a.a.a.b.gb	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626.d
Abingdon island giant tortoise	MODERN SPECIES	2519							CARS1 (ENSCABG00000006190)	ENSCABG00000006187	ENSCABG00000006186	PTPRJ (ENSCABG00000006183)	PTPN5 (ENSCABG00000006181) #16	TMEM86A (ENSCABG00000006168) #17	SPTY2D1 (ENSCABG00000006164) #18	ENSCABG00000006161	ENSCABG00000006159	TSG101 (ENSCABG00000006156) #22	LDHA (ENSCABG00000006154) #24	GTF2H1 (ENSCABG00000006106) #25	HPS5 (ENSCABG00000005641) #27
Goode s thornscrub tortoise	MODERN SPECIES	18	TRPM5 (ENSGEVG00005013933)	KCNQ1 (ENSGEVG00005013596)	CDKN1C (ENSGEVG00005013551)	ENSGEVG00005013530	SLC22A18 (ENSGEVG00005013388)	NAP1L4 (ENSGEVG00005013287)	CARS1 (ENSGEVG00005013121)	ENSGEVG00005013063	ENSGEVG00005012985	ENSGEVG00005012930	PTPRJ (ENSGEVG00005012489)	PTPN5 (ENSGEVG00005012381) #16	IGSF22 (ENSGEVG00005012213)	TMEM86A (ENSGEVG00005012053) #17	ENSGEVG00005011961	TSG101 (ENSGEVG00005011900) #22	LDHA (ENSGEVG00005011863) #24	GTF2H1 (ENSGEVG00005011817) #25	ENSGEVG00005011786	ENSGEVG00005011723 #27	ENSGEVG00005011487 #27	ENSGEVG00005011403	ENSGEVG00005011365	SAAL1 (ENSGEVG00005011345)	TPH1 (ENSGEVG00005011260)	SERGEF (ENSGEVG00005011075)	KCNC1 (ENSGEVG00005010986)	MYOD1 (ENSGEVG00005010944)	ENSGEVG00005010902	OTOG (ENSGEVG00005010473)	USH1C (ENSGEVG00005009326)
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164956	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
tuatara	MODERN SPECIES	451																TSG101 (ENSSPUG00000010069) #22	LDHA (ENSSPUG00000010095) #24	GTF2H1 (ENSSPUG00000010106) #25	ENSSPUG00000010164 #27	ENSSPUG00000010181 #27
Episquamata	ANCESTRAL SPECIES		ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00390000013383	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e	ENSGT00390000001927.a
Argentine black and white tegu	MODERN SPECIES	3	ENSSMRG00000014183	ENSSMRG00000014184	NAP1L4 (ENSSMRG00000014185)	CARS1 (ENSSMRG00000014187)	ENSSMRG00000014188	PSMG1 (ENSSMRG00000014190)	OSBPL5 (ENSSMRG00000014191)	PTPRJ (ENSSMRG00000014192)	PTPN5 (ENSSMRG00000014194) #16	ENSSMRG00000014196	IGSF22 (ENSSMRG00000014197)	TMEM86A (ENSSMRG00000014198) #17	ENSSMRG00000014201	SPTY2D1 (ENSSMRG00000014202) #18	UEVLD (ENSSMRG00000014203) #21	TSG101 (ENSSMRG00000014204) #22	LDHA (ENSSMRG00000014205) #24	GTF2H1 (ENSSMRG00000014206) #25	HPS5 (ENSSMRG00000014207) #27	SAAL1 (ENSSMRG00000014475)	TPH1 (ENSSMRG00000014476)	SERGEF (ENSSMRG00000014477)	KCNC1 (ENSSMRG00000014480)	MYOD1 (ENSSMRG00000014495)	ENSSMRG00000014497	OTOG (ENSSMRG00000014503)	USH1C (ENSSMRG00000014516)	ABCC8 (ENSSMRG00000014918)	ENSSMRG00000014922	KCNJ11 (ENSSMRG00000014924)	ENSSMRG00000014927
Common wall lizard	MODERN SPECIES		ENSPMRG00000005487	ENSPMRG00000005482	NAP1L4 (ENSPMRG00000005472)	CARS1 (ENSPMRG00000005455)	PSMG1 (ENSPMRG00000005447)	ENSPMRG00000005439	ENSPMRG00000005433	OSBPL5 (ENSPMRG00000005419)	PTPRJ (ENSPMRG00000005401)	PTPN5 (ENSPMRG00000005389) #16	IGSF22 (ENSPMRG00000005349)	TMEM86A (ENSPMRG00000005342) #17	C18orf21 (ENSPMRG00000005336)	SPTY2D1 (ENSPMRG00000005330) #18	ENSPMRG00000005321	TSG101 (ENSPMRG00000005311) #22	LDHA (ENSPMRG00000005300) #24	GTF2H1 (ENSPMRG00000005288) #25	HPS5 (ENSPMRG00000005216) #27	SAAL1 (ENSPMRG00000005195)	TPH1 (ENSPMRG00000005139)	SERGEF (ENSPMRG00000005122)	KCNC1 (ENSPMRG00000005116)	MYOD1 (ENSPMRG00000005112)	ENSPMRG00000005107	OTOG (ENSPMRG00000005049)	USH1C (ENSPMRG00000005026)	ABCC8 (ENSPMRG00000002883)	KCNJ11 (ENSPMRG00000002356)	ENSPMRG00000002342	NUCB2 (ENSPMRG00000002326)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e	ENSGT00390000001927.a
Lizard	MODERN SPECIES		SLC22A18 (ENSACAG00000000077)	ENSACAG00000000076	ENSACAG00000037028	NAP1L4 (ENSACAG00000000074)	CARS1 (ENSACAG00000000073)	ENSACAG00000000071	OSBPL5 (ENSACAG00000000070)	ENSACAG00000000068	ENSACAG00000040931	PTPN5 (ENSACAG00000000067) #16	IGSF22 (ENSACAG00000000066)	ENSACAG00000043092	TMEM86A (ENSACAG00000000065) #17	ENSACAG00000000064	ENSACAG00000000063 ##24	TSG101 (ENSACAG00000000062) #22	ENSACAG00000000061 #24	GTF2H1 (ENSACAG00000000060) #25	HPS5 (ENSACAG00000000059) #27	SAAL1 (ENSACAG00000000058)	TPH1 (ENSACAG00000000057)	SERGEF (ENSACAG00000028890)	KCNC1 (ENSACAG00000000055)	MYOD1 (ENSACAG00000039537)	ENSACAG00000037486	ENSACAG00000038180	OTOG (ENSACAG00000000052)	USH1C (ENSACAG00000000051)	ABCC8 (ENSACAG00000000048)	KCNJ11 (ENSACAG00000000047)	NUCB2 (ENSACAG00000000046)
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b.r	ENSGT00440000039564.a.b.q	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e	ENSGT00390000001927.a
Indian cobra	MODERN SPECIES		CDKN1C (ENSNNAG00000009723)	SLC22A18 (ENSNNAG00000009743)	ENSNNAG00000009837	ENSNNAG00000009863	NAP1L4 (ENSNNAG00000009899)	CARS1 (ENSNNAG00000010101)	ENSNNAG00000010198	PSMG1 (ENSNNAG00000010243)	OSBPL5 (ENSNNAG00000010423)	PTPRJ (ENSNNAG00000012938)	PTPN5 (ENSNNAG00000012998) #16	IGSF22 (ENSNNAG00000013035)	TMEM86A (ENSNNAG00000013088) #17	SPTY2D1 (ENSNNAG00000013097) #18	ENSNNAG00000013120	TSG101 (ENSNNAG00000013150) #22	LDHA (ENSNNAG00000013178) #24	GTF2H1 (ENSNNAG00000013205) #25	HPS5 (ENSNNAG00000013337) #27	SAAL1 (ENSNNAG00000013771)	TPH1 (ENSNNAG00000013808)	SERGEF (ENSNNAG00000013832)	KCNC1 (ENSNNAG00000013849)	ENSNNAG00000013869	MYOD1 (ENSNNAG00000013885)	OTOG (ENSNNAG00000013913)	USH1C (ENSNNAG00000014394)	ABCC8 (ENSNNAG00000015317)	KCNJ11 (ENSNNAG00000016074)	ENSNNAG00000016077	NUCB2 (ENSNNAG00000016084)
Elapidae_a	ANCESTRAL SPECIES	29	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b.r	ENSGT00440000039564.a.b.q	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626.e	ENSGT00980000200162	ENSGT00940000156626.f	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Blue-lipped sea krait	MODERN SPECIES	8378																TSG101 (ENSLLTG00000004566) #22	LDHA (ENSLLTG00000004556) #24	GTF2H1 (ENSLLTG00000004525) #25	HPS5 (ENSLLTG00000004471) #27
Acanthophiinae	ANCESTRAL SPECIES	29	ENSGT00960000193175	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b.r	ENSGT00440000039564.a.b.q	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626.e	ENSGT00980000200162	ENSGT00940000156626.f	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Mainland tiger snake	MODERN SPECIES	22	KCNQ1 (ENSNSUG00000017457)	ENSNSUG00000017458	CDKN1C (ENSNSUG00000017459)	SLC22A18 (ENSNSUG00000017460)	ENSNSUG00000017461	ENSNSUG00000017462	NAP1L4 (ENSNSUG00000017466)	CARS1 (ENSNSUG00000017473)	PSMG1 (ENSNSUG00000018054)	OSBPL5 (ENSNSUG00000018055)	PTPRJ (ENSNSUG00000018065)	PTPN5 (ENSNSUG00000018080) #16	TMEM86A (ENSNSUG00000018086) #17	SPTY2D1 (ENSNSUG00000018105) #18	ENSNSUG00000018106	TSG101 (ENSNSUG00000018109) #22	LDHA (ENSNSUG00000018110) #24	ENSNSUG00000018111 #25	ENSNSUG00000018112 #27	ENSNSUG00000018113 #27	SAAL1 (ENSNSUG00000018114)	TPH1 (ENSNSUG00000018121)	SERGEF (ENSNSUG00000018122)	KCNC1 (ENSNSUG00000018123)	MYOD1 (ENSNSUG00000018125)	OTOG (ENSNSUG00000018126)	USH1C (ENSNSUG00000018127)	ABCC8 (ENSNSUG00000018128)	KCNJ11 (ENSNSUG00000018189)	ENSNSUG00000018191	NUCB2 (ENSNSUG00000018192)
Eastern brown snake	MODERN SPECIES	32	ENSPTXG00000001002	CDKN1C (ENSPTXG00000001001)	SLC22A18 (ENSPTXG00000000998)	ENSPTXG00000000996	ENSPTXG00000000994	NAP1L4 (ENSPTXG00000000988)	CARS1 (ENSPTXG00000000979)	PSMG1 (ENSPTXG00000000972)	OSBPL5 (ENSPTXG00000000956)	PTPRJ (ENSPTXG00000000941)	PTPN5 (ENSPTXG00000000933) #16	IGSF22 (ENSPTXG00000000928)	TMEM86A (ENSPTXG00000000920) #17	SPTY2D1 (ENSPTXG00000000916) #18	ENSPTXG00000000912	TSG101 (ENSPTXG00000000909) #22	LDHA (ENSPTXG00000000902) #24	GTF2H1 (ENSPTXG00000000897) #25	HPS5 (ENSPTXG00000000894) #27	SAAL1 (ENSPTXG00000000891)	TPH1 (ENSPTXG00000000890)	SERGEF (ENSPTXG00000000888)	KCNC1 (ENSPTXG00000000887)	MYOD1 (ENSPTXG00000000885)	OTOG (ENSPTXG00000000874)	USH1C (ENSPTXG00000000688)	ENSPTXG00000000668	ENSPTXG00000000661	KCNJ11 (ENSPTXG00000000659)	ENSPTXG00000000655	NUCB2 (ENSPTXG00000000649)
Anura	ANCESTRAL SPECIES	163							ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT00940000154133.A #18	ENSGT00940000153903.a.a #22	ENSGT00940000153201 #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Frog	MODERN SPECIES	4	ENSXETG00000045579	ENSXETG00000046872	abcc8 (ENSXETG00000046120)	gtf2h1 (ENSXETG00000018992) #25	saal1 (ENSXETG00000018990)	ENSXETG00000048806	ENSXETG00000042377	sergef (ENSXETG00000014410)	kcnc1 (ENSXETG00000014391)	MYOD1 (ENSXETG00000046866)	OTOG (ENSXETG00000048795)	ENSXETG00000049215	ENSXETG00000044994	ENSXETG00000048951	ush1c (ENSXETG00000043793)	tsg101 (ENSXETG00000046442) #22	ldha (ENSXETG00000041431) #24	uevld (ENSXETG00000008509) #21	spty2d1 (ENSXETG00000043007)	ENSXETG00000047278 #17	ENSXETG00000044019 #17	ENSXETG00000047729	ENSXETG00000041841	PTPN5 (ENSXETG00000042778) #16	ENSXETG00000040706	cars1 (ENSXETG00000021868)	ENSXETG00000044838	nap1l4 (ENSXETG00000046400)	PHLDA2 (ENSXETG00000043313)	SLC22A18 (ENSXETG00000049026)
Coelacanth	MODERN SPECIES	288											PTPN5 (ENSLACG00000007406) #16	IGSF22 (ENSLACG00000008077)	TMEM86A (ENSLACG00000008872) #17	SPTY2D1 (ENSLACG00000009475) #18	ENSLACG00000009769 #23	TSG101 (ENSLACG00000010221) #22	LDHA (ENSLACG00000010504) #24	GTF2H1 (ENSLACG00000011123) #25	HPS5 (ENSLACG00000011372) #27	SAAL1 (ENSLACG00000011733)	TPH1 (ENSLACG00000012424)	SERGEF (ENSLACG00000012618)	KCNC1 (ENSLACG00000013857)	MYOD1 (ENSLACG00000014430)	zgc:172145 (ENSLACG00000014515)	ENSLACG00000014612	OTOG (ENSLACG00000015455)	USH1C (ENSLACG00000016027)	ABCC8 (ENSLACG00000016365)	KCNJ11 (ENSLACG00000016707)	ENSLACG00000016827
Actinopterygii	ANCESTRAL SPECIES	12	ENSGT00390000013315	ENSGT00940000159073	ENSGT00940000157089.B	ENSGT00390000012935	ENSGT00940000158287	ENSGT00390000014757	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201 #24	ENSGT00940000163542	ENSGT00390000005430	ENSGT00550000075025	ENSGT00390000001443	ENSGT00940000155391.a	ENSGT00940000156019	ENSGT00940000165785	ENSGT01010000222360.D.b	ENSGT00940000156734	ENSGT00390000004456	ENSGT01060000248747	ENSGT00940000158268.a	ENSGT00440000037417.A	ENSGT00950000182976.a.b
Reedfish	MODERN SPECIES	10	ENSECRG00000003401	ENSECRG00000003393	ENSECRG00000003387	ENSECRG00000003380	lmo2 (ENSECRG00000003364)	caprin1b (ENSECRG00000003317)	nat10 (ENSECRG00000003270)	ABTB2 (ENSECRG00000003239)	B4GALNT4 (ENSECRG00000003215)	IGSF22 (ENSECRG00000003194)	tmem86a (ENSECRG00000003184) #17	spty2d1 (ENSECRG00000003178) #18	ENSECRG00000003087	ENSECRG00000003054	ENSECRG00000003044	TSG101 (ENSECRG00000003008) #22	ldha (ENSECRG00000002979) #24	ENSECRG00000002970	ENSECRG00000002958	BRSK2 (ENSECRG00000002932)	mob2a (ENSECRG00000002900)	dusp8a (ENSECRG00000002876)	PTPN5 (ENSECRG00000002863) #16	ENSECRG00000002846	cars1 (ENSECRG00000002819)	cpt1aa (ENSECRG00000002791)	ENSECRG00000002762	ENSECRG00000002743	slc18a2 (ENSECRG00000002598)	PDZD8 (ENSECRG00000002536)	emx2 (ENSECRG00000002520)
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.a ##21
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.a ##21
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.a ##21
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.a ##21
Neopterygii	ANCESTRAL SPECIES	313							ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.a.a	ENSGT00950000183205.a	ENSGT00950000182839.B.b	ENSGT00940000169472	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24
Spotted gar	MODERN SPECIES	666									irf7 (ENSLOCG00000000378)	ENSLOCG00000000438	ENSLOCG00000000493	rassf7b (ENSLOCG00000000536)	ENSLOCG00000000615	LRRC56 (ENSLOCG00000000649)	hrasb (ENSLOCG00000000684)	tsg101a (ENSLOCG00000000710) ##21	ldha (ENSLOCG00000000737) #24	BRSK2 (ENSLOCG00000000765)	ptdss2 (ENSLOCG00000000829)	trpm5 (ENSLOCG00000000857)	ENSLOCG00000000889	KCNQ1 (ENSLOCG00000000916)	ENSLOCG00000000936	ifitm5 (ENSLOCG00000000971)	ENSLOCG00000000993	cat (ENSLOCG00000001015)	commd9 (ENSLOCG00000001074)	PRR5L (ENSLOCG00000001097)	traf6 (ENSLOCG00000001118)	api5 (ENSLOCG00000001136)	ttc17 (ENSLOCG00000001159)
Osteoglossocephalai	ANCESTRAL SPECIES	59	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238	ENSGT00950000182885.C.a	ENSGT00940000160745	ENSGT00390000007739
Clupeocephala	ANCESTRAL SPECIES	124	ENSGT00940000163759	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000164715
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	51										ENSGT00940000165300.b.a.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00940000161238.l	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21
Clupeiformes	ANCESTRAL SPECIES	60																ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.m	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00390000008184	ENSGT00950000183093.B.a.b	ENSGT00940000155663.f.b	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a.l	ENSGT00390000007681.b.a.a	ENSGT00550000075025	ENSGT00390000001443	ENSGT00940000155391.a.b.b	ENSGT01010000222360.D.b	ENSGT00940000156291.e
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	22	ss18l2 (ENSCHAG00000004241)	lsm14ab (ENSCHAG00000004313)	ENSCHAG00000004344	KCTD15 (ENSCHAG00000004450)	ENSCHAG00000004558	CHST8 (ENSCHAG00000004590)	ENSCHAG00000004602	ENSCHAG00000004608	pepd (ENSCHAG00000004629)	mrpl21 (ENSCHAG00000004645)	ENSCHAG00000004693	ENSCHAG00000004727	tollip (ENSCHAG00000004884)	rassf7b (ENSCHAG00000005064)	hrasb (ENSCHAG00000005068)	ENSCHAG00000005104 ##21	ENSCHAG00000005214 ##21	ENSCHAG00000005238	ENSCHAG00000005272	BRSK2 (ENSCHAG00000005308)	ABTB2 (ENSCHAG00000005811)	ENSCHAG00000005977	ENSCHAG00000006161	dbx1a (ENSCHAG00000006362)	NAV2 (ENSCHAG00000006526)	csrp3 (ENSCHAG00000011105)	zdhhc13 (ENSCHAG00000011141)	mpped2a (ENSCHAG00000011281)	immp1l (ENSCHAG00000011318)	elp4 (ENSCHAG00000011336)	pax6b (ENSCHAG00000011631)
Atlantic herring	MODERN SPECIES	22	lsm14ab (ENSCHAG00000004313)	ENSCHAG00000004344	KCTD15 (ENSCHAG00000004450)	ENSCHAG00000004558	CHST8 (ENSCHAG00000004590)	ENSCHAG00000004602	ENSCHAG00000004608	pepd (ENSCHAG00000004629)	mrpl21 (ENSCHAG00000004645)	ENSCHAG00000004693	ENSCHAG00000004727	tollip (ENSCHAG00000004884)	rassf7b (ENSCHAG00000005064)	hrasb (ENSCHAG00000005068)	ENSCHAG00000005104 ##21	ENSCHAG00000005214 ##21	ENSCHAG00000005238	ENSCHAG00000005272	BRSK2 (ENSCHAG00000005308)	ABTB2 (ENSCHAG00000005811)	ENSCHAG00000005977	ENSCHAG00000006161	dbx1a (ENSCHAG00000006362)	NAV2 (ENSCHAG00000006526)	csrp3 (ENSCHAG00000011105)	zdhhc13 (ENSCHAG00000011141)	mpped2a (ENSCHAG00000011281)	immp1l (ENSCHAG00000011318)	elp4 (ENSCHAG00000011336)	pax6b (ENSCHAG00000011631)	RCN1 (ENSCHAG00000013051)
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	134															dnaaf1 (ENSDCDG00000023456)	ENSDCDG00000023454 ##21	ENSDCDG00000023453	ENSDCDG00000023451	BRSK2 (ENSDCDG00000023443)	si:ch211-107o10.3 (ENSDCDG00000023437)	wdr76 (ENSDCDG00000023433)
Denticle herring	MODERN SPECIES	68															dnaaf1 (ENSDCDG00000005995)	ENSDCDG00000006252 ##21	BRSK2 (ENSDCDG00000006382)	ENSDCDG00000006656	si:ch211-107o10.3 (ENSDCDG00000006705)	wdr76 (ENSDCDG00000006750)	ZNF710 (ENSDCDG00000006780)	ENSDCDG00000006835	ENSDCDG00000006862
Otophysi	ANCESTRAL SPECIES	85										ENSGT00940000165300.b.a.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739
Characiphysae	ANCESTRAL SPECIES	27															ENSGT00950000182839.B.b.a	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00940000161238.l	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000156049.b	ENSGT00940000159628.c	ENSGT00940000155971.d.b.a.c	ENSGT00940000155426	ENSGT00530000063981.b.d	ENSGT00940000160588	ENSGT00940000164990.d	ENSGT00940000154996.a.b.b
Characiphysae_b	ANCESTRAL SPECIES	28														ENSGT00940000165300.b.a.a.a	ENSGT00950000182839.B.b.a	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00940000161238.l	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000156049.b	ENSGT00940000159628.c	ENSGT00940000155971.d.b.a.c	ENSGT00940000155426	ENSGT00530000063981.b.d	ENSGT00940000160588	ENSGT00940000164990.d	ENSGT00940000154996.a.b.b
Characoidei	ANCESTRAL SPECIES	24															ENSGT00950000182839.B.b.a	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00940000161238.l	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000156049.b	ENSGT00940000159628.c	ENSGT00940000155971.d.b.a.c	ENSGT00940000155426	ENSGT00530000063981.b.d	ENSGT00940000160588	ENSGT00940000164990.d	ENSGT00940000154996.a.b.b
Red-bellied piranha	MODERN SPECIES	489							LRRC4C (ENSPNAG00000000649)	apip (ENSPNAG00000000642)	slc1a2a (ENSPNAG00000008062)	PAMR1 (ENSPNAG00000000619)	FJX1 (ENSPNAG00000008022)	ENSPNAG00000008021	ENSPNAG00000008015	rassf7b (ENSPNAG00000000587)	hrasb (ENSPNAG00000000584)	ENSPNAG00000008000 ##21
Mexicana tetra	MODERN SPECIES	47	vps33b (ENSAMXG00000040384)	prc1b (ENSAMXG00000032966)	ttc17 (ENSAMXG00000011174)	hsd17b12b (ENSAMXG00000035058)	ENSAMXG00000034346	ENSAMXG00000032248	LRRC4C (ENSAMXG00000025571)	apip (ENSAMXG00000003826)	ENSAMXG00000036526	slc1a2a (ENSAMXG00000030158)	PAMR1 (ENSAMXG00000003809)	ENSAMXG00000025568	ENSAMXG00000028066	rassf7b (ENSAMXG00000007694)	hrasb (ENSAMXG00000033907)	ENSAMXG00000007690 ##21	BRSK2 (ENSAMXG00000007672)	ENSAMXG00000038973	ABTB2 (ENSAMXG00000007654)	B4GALNT4 (ENSAMXG00000007637)	ENSAMXG00000007622	igf2a (ENSAMXG00000039167)	ENSAMXG00000034619	cpt1aa (ENSAMXG00000007601)	mfge8a (ENSAMXG00000007594)	HAPLN3 (ENSAMXG00000007589)	ACAN (ENSAMXG00000007573)	traf6 (ENSAMXG00000007558)	ENSAMXG00000034197	trpm5 (ENSAMXG00000007541)	ENSAMXG00000043541
Electric eel	MODERN SPECIES	209	hddc3 (ENSEEEG00000019272)	vps33b (ENSEEEG00000019264)	prc1b (ENSEEEG00000019262)	ttc17 (ENSEEEG00000019260)	hsd17b12b (ENSEEEG00000019253)	ENSEEEG00000019251	ENSEEEG00000019250	LRRC4C (ENSEEEG00000019249)	apip (ENSEEEG00000019247)	ENSEEEG00000019245	slc1a2a (ENSEEEG00000019243)	PAMR1 (ENSEEEG00000019239)	ascl1b (ENSEEEG00000019237)	rassf7b (ENSEEEG00000019235)	hrasb (ENSEEEG00000019231)	ENSEEEG00000019230 ##21	BRSK2 (ENSEEEG00000019229)	ABTB2 (ENSEEEG00000019122)	B4GALNT4 (ENSEEEG00000019120)	ENSEEEG00000019118	igf2a (ENSEEEG00000019117)	cpt1aa (ENSEEEG00000018794)	mfge8a (ENSEEEG00000018786)	HAPLN3 (ENSEEEG00000018780)	ENSEEEG00000018777	traf6 (ENSEEEG00000018776)	trpm5 (ENSEEEG00000018762)	cdkn1ca (ENSEEEG00000018761)	KCNQ1 (ENSEEEG00000018760)
Channel catfish	MODERN SPECIES	19	PRC1 (ENSIPUG00000022676)	ttc17 (ENSIPUG00000022641)	hsd17b12b (ENSIPUG00000022611)	ENSIPUG00000022606	Lrrc4c (ENSIPUG00000022604)	ENSIPUG00000022600	apip (ENSIPUG00000022579)	slc1a2a (ENSIPUG00000022560)	PAMR1 (ENSIPUG00000022552)	ascl1b (ENSIPUG00000022550)	ENSIPUG00000022538	Rassf7 (ENSIPUG00000022527)	hrasb (ENSIPUG00000022502)	ENSIPUG00000022492	ENSIPUG00000022485 #21	tsg101b (ENSIPUG00000022428) ##21	BRSK2 (ENSIPUG00000022405)	ABTB2 (ENSIPUG00000022359)	B4GALNT4 (ENSIPUG00000022345)	ENSIPUG00000022314	igf2a (ENSIPUG00000022309)	CPT1A (ENSIPUG00000022263)	Edil3 (ENSIPUG00000022233)	HAPLN3 (ENSIPUG00000022227)	ACAN (ENSIPUG00000022176)	traf6 (ENSIPUG00000022164)	ENSIPUG00000022153	trpm5 (ENSIPUG00000022100)	cdkn1ca (ENSIPUG00000022095)	kcnq1.1 (ENSIPUG00000021227)	lingo1b (ENSIPUG00000021214)
Cyprinoidei	ANCESTRAL SPECIES	347																ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	235	ENSGT00390000009453.fb.b.l	ENSGT00390000006196.h	ENSGT00940000154860.a.a.b	ENSGT00940000179199.b	ENSGT00940000157405.c.b.a	ENSGT00390000001680.a	ENSGT01000000214788.d	ENSGT00530000063822.a.a.p	ENSGT00940000155379.g.a.n	ENSGT00940000154234.a.d.b	ENSGT00390000016768.e	ENSGT00940000165300.b.a.a.a.a	ENSGT00940000163916.h	ENSGT00950000182839.B.b.a.a	ENSGT00940000155653.b.d.a	ENSGT00940000153903.a.b.a.a.e ##21	ENSGT00940000157462.C.c.a.l.b	ENSGT00940000157661.e.b.a	ENSGT01050000244857.A.a.b.f.b	ENSGT00940000161238.l.b	ENSGT01060000248595.b.a.b.a.n.b.a	ENSGT00940000156049.b.b	ENSGT00940000155971.d.b.b.b	ENSGT00940000160588.i.b	ENSGT00940000162677.q.b	ENSGT00940000164990.d.h	ENSGT00940000154996.a.b.b.b	ENSGT00940000155491.d.i.a	ENSGT00940000159422.b.b	ENSGT00940000155399.a.j	ENSGT00940000157725.o.b
Cyprininae_a	ANCESTRAL SPECIES	232	ENSGT00940000156813.i	ENSGT00390000009453.fb.b.l	ENSGT00390000006196.h	ENSGT00940000154860.a.a.b	ENSGT00940000179199.b	ENSGT00940000157405.c.b.a	ENSGT00390000001680.a	ENSGT00530000063822.a.a.p	ENSGT00940000155379.g.a.n	ENSGT00940000154234.a.d.b	ENSGT00390000016768.e	ENSGT00940000165300.b.a.a.a.a	ENSGT00940000163916.h	ENSGT00950000182839.B.b.a.a	ENSGT00940000155653.b.d.a	ENSGT00940000153903.a.b.a.a.e ##21	ENSGT00940000157462.C.c.a.l.b	ENSGT00940000157661.e.b.a	ENSGT01050000244857.A.a.b.f.b	ENSGT00940000161238.l.b	ENSGT01060000248595.b.a.b.a.n.b.a	ENSGT00940000156049.b.b	ENSGT00940000155971.d.b.a.e	ENSGT00940000155426.m	ENSGT00530000063981.b.d	ENSGT00940000160588.i.b	ENSGT00940000162677.q.b	ENSGT00940000164990.d.h	ENSGT00940000154996.a.b.b.b	ENSGT00940000155491.d.i.a	ENSGT00940000159422.b.b
Common carp reference	MODERN SPECIES	6	hddc3 (ENSCCRG00000062387)	prc1b (ENSCCRG00000006138)	ttc17 (ENSCCRG00000000878)	hsd17b12b (ENSCCRG00000029737)	ENSCCRG00000000870	ENSCCRG00000000755	LRRC4C (ENSCCRG00000061478)	apip (ENSCCRG00000004023)	ENSCCRG00000057525	slc1a2a (ENSCCRG00000008506)	FJX1 (ENSCCRG00000066816)	ascl1b (ENSCCRG00000046924)	ENSCCRG00000076922	rassf7b (ENSCCRG00000011193)	hrasb (ENSCCRG00000011187)	ENSCCRG00000050362 ##21	ENSCCRG00000004728	ENSCCRG00000004364	ENSCCRG00000032474	ENSCCRG00000046819	mfge8a (ENSCCRG00000014023)	cpt1aa (ENSCCRG00000014043)	ENSCCRG00000040986	ENSCCRG00000075367	traf6 (ENSCCRG00000062778)	ENSCCRG00000041182	trpm5 (ENSCCRG00000031644)	cdkn1ca (ENSCCRG00000031636)	kcnq1.1 (ENSCCRG00000031183)	lingo1b (ENSCCRG00000016371)	ENSCCRG00000019911
Golden-line barbel	MODERN SPECIES	283	mfap1 (ENSSGRG00000014564)	vps33b (ENSSGRG00000013767)	prc1b (ENSSGRG00000013567)	ttc17 (ENSSGRG00000013330)	hsd17b12b (ENSSGRG00000013259)	ENSSGRG00000013257	LRRC4C (ENSSGRG00000013255)	apip (ENSSGRG00000013253)	slc1a2a (ENSSGRG00000013216)	PAMR1 (ENSSGRG00000013203)	FJX1 (ENSSGRG00000013202)	ascl1b (ENSSGRG00000013201)	ENSSGRG00000013200	rassf7b (ENSSGRG00000013199)	hrasb (ENSSGRG00000013118)	ENSSGRG00000013116 ##21	BRSK2 (ENSSGRG00000012997)	ABTB2 (ENSSGRG00000012562)	B4GALNT4 (ENSSGRG00000012559)
Goldfish	MODERN SPECIES	25	ENSCARG00000016282	prc1b (ENSCARG00000015896)	ttc17 (ENSCARG00000015317)	hsd17b12b (ENSCARG00000015191)	ENSCARG00000015181	ENSCARG00000015177	LRRC4C (ENSCARG00000015169)	apip (ENSCARG00000015077)	ENSCARG00000015065	slc1a2a (ENSCARG00000014835)	FJX1 (ENSCARG00000014822)	ascl1b (ENSCARG00000014817)	ENSCARG00000014807	rassf7b (ENSCARG00000014802)	hrasb (ENSCARG00000014798)	ENSCARG00000014493 ##21	BRSK2 (ENSCARG00000014193)	ENSCARG00000014144	ENSCARG00000014130	cpt1aa (ENSCARG00000013955)	traf6 (ENSCARG00000013932)	trpm5 (ENSCARG00000013916)	cdkn1ca (ENSCARG00000013903)	kcnq1.1 (ENSCARG00000013742)	ENSCARG00000013712	ENSCARG00000013710	lingo1b (ENSCARG00000013700)	ENSCARG00000013639	crabp1b (ENSCARG00000013622)	slc25a44b (ENSCARG00000013616)	oaz2b (ENSCARG00000013608)
Cyprininae	ANCESTRAL SPECIES	35	ENSGT00690000102225.q.a	ENSGT00390000011608	ENSGT00990000205513	ENSGT00390000006196.g	ENSGT00940000154860.a.a.a	ENSGT00940000179199.a	ENSGT00940000157405.c.b.b	ENSGT00390000001680.b	ENSGT00940000155379.g.a.m	ENSGT00940000154234.a.d.a	ENSGT00390000016768.f	ENSGT00940000165300.b.a.a.a.b	ENSGT00940000163916.g.a	ENSGT00950000182839.B.b.a.b	ENSGT00940000155653.b.d.b	ENSGT00940000153903.a.b.a.a.f ##21	ENSGT00940000157462.C.c.a.l.a	ENSGT00940000157661.e.b.b	ENSGT01050000244857.A.a.b.f.a	ENSGT00940000161238.l.a	ENSGT00940000160745.c	ENSGT01060000248595.b.a.b.a.n.b.b	ENSGT00940000156049.b.a	ENSGT00940000155971.d.b.a	ENSGT00940000155426.n	ENSGT00530000063981.b.d	ENSGT00940000160588.i.a	ENSGT00940000162677.q.a	ENSGT00940000164990.d.g	ENSGT00940000154996.a.b.b.a	ENSGT00940000155491.d.i.b
Goldfish	MODERN SPECIES	47	vps33b (ENSCARG00000001436)	prc1b (ENSCARG00000001224)	ttc17 (ENSCARG00000001107)	hsd17b12b (ENSCARG00000001064)	ENSCARG00000001060	LRRC4C (ENSCARG00000001058)	apip (ENSCARG00000001051)	slc1a2a (ENSCARG00000000900)	PAMR1 (ENSCARG00000000800)	FJX1 (ENSCARG00000000789)	ENSCARG00000000780	ascl1b (ENSCARG00000000776)	ENSCARG00000000771	rassf7b (ENSCARG00000000762)	hrasb (ENSCARG00000000755)	ENSCARG00000000723 ##21	BRSK2 (ENSCARG00000000533)	ABTB2 (ENSCARG00000000407)	B4GALNT4 (ENSCARG00000000329)	ENSCARG00000012866	ENSCARG00000012855	igf2a (ENSCARG00000012839)	cpt1aa (ENSCARG00000012769)	mfge8a (ENSCARG00000012694)	ENSCARG00000012673	traf6 (ENSCARG00000012659)	ENSCARG00000012650	trpm5 (ENSCARG00000012633)	cdkn1ca (ENSCARG00000012621)	kcnq1.1 (ENSCARG00000012583)	lingo1b (ENSCARG00000012574)
Cyprininae_a	ANCESTRAL SPECIES	55	ENSGT00690000102225.q.a	ENSGT00390000008502.t	ENSGT00690000102225.r	ENSGT00390000011608	ENSGT00940000156813.j	ENSGT00390000006196.g	ENSGT00940000154860.a.a.a	ENSGT00940000179199.a	ENSGT00940000157405.c.b.b	ENSGT00940000155379.g.a.m	ENSGT00940000154234.a.d.a	ENSGT00390000016768.f	ENSGT00940000165300.b.a.a.a.b	ENSGT00950000182839.B.b.a.b	ENSGT00940000155653.b.d.b	ENSGT00940000153903.a.b.a.a.f ##21	ENSGT00940000157462.C.c.a.l.a	ENSGT00940000157661.e.b.b	ENSGT01050000244857.A.a.b.f.a	ENSGT00940000161238.l.a	ENSGT00940000160745.c	ENSGT01060000248595.b.a.b.a.n.b.b	ENSGT00940000156049.b.a	ENSGT00940000155971.d.b.b.b	ENSGT00940000155971.d.b.a.f	ENSGT00940000155426.n	ENSGT00940000160588.i.a	ENSGT00940000162677.q.a	ENSGT00940000164990.d.g	ENSGT00940000154996.a.b.b.a	ENSGT00940000155491.d.i.b
Common carp reference	MODERN SPECIES		SERINC4 (ENSCCRG00000006151)	hypk (ENSCCRG00000006146)	mfap1 (ENSCCRG00000006142)	ENSCCRG00000075454	prc1b (ENSCCRG00000000916)	ttc17 (ENSCCRG00000048653)	hsd17b12b (ENSCCRG00000000780)	ENSCCRG00000029758	LRRC4C (ENSCCRG00000067358)	ENSCCRG00000054831	slc1a2a (ENSCCRG00000067907)	PAMR1 (ENSCCRG00000046927)	FJX1 (ENSCCRG00000062310)	ascl1b (ENSCCRG00000033489)	rassf7b (ENSCCRG00000033471)	ENSCCRG00000078295 ##21	ENSCCRG00000019633	ENSCCRG00000020093	ENSCCRG00000048831	ENSCCRG00000077523	ENSCCRG00000054102	igf2a (ENSCCRG00000044723)	cpt1aa (ENSCCRG00000050268)	mfge8a (ENSCCRG00000082007)	ENSCCRG00000002468	traf6 (ENSCCRG00000002480)	trpm5 (ENSCCRG00000048269)	cdkn1ca (ENSCCRG00000048268)	kcnq1.1 (ENSCCRG00000016379)	lingo1b (ENSCCRG00000031226)	ENSCCRG00000028802
Golden-line barbel	MODERN SPECIES	4296																ENSSGRG00000001575 ##21
Zebrafish	MODERN SPECIES	22	hddc3 (ENSDARG00000020473)	vps33b (ENSDARG00000044813)	prc1b (ENSDARG00000005993)	ttc17 (ENSDARG00000044812)	hsd17b12b (ENSDARG00000035872)	LRRC4C (ENSDARG00000016739)	apip (ENSDARG00000003132)	ENSDARG00000087863	slc1a2a (ENSDARG00000052138)	PAMR1 (ENSDARG00000103184)	FJX1 (ENSDARG00000035873)	ascl1b (ENSDARG00000101628)	ENSDARG00000009702	rassf7b (ENSDARG00000003193)	hrasb (ENSDARG00000005651)	ENSDARG00000011897 ##21	BRSK2 (ENSDARG00000077791)	ABTB2 (ENSDARG00000059751)	B4GALNT4 (ENSDARG00000076701)	ENSDARG00000011088	igf2a (ENSDARG00000018643)	cpt1aa (ENSDARG00000059770)	mfge8a (ENSDARG00000015349)	ENSDARG00000035891	traf6 (ENSDARG00000028058)	ENSDARG00000105788	trpm5 (ENSDARG00000059792)	cdkn1ca (ENSDARG00000010878)	kcnq1.1 (ENSDARG00000059798)	lingo1b (ENSDARG00000035899)	ENSDARG00000059812
Otomorpha	ANCESTRAL SPECIES	51									ENSGT00940000165300.b.a.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00940000161238.l	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k
Clupeiformes	ANCESTRAL SPECIES	312									ENSGT00940000165300.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.n	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a
Atlantic herring	MODERN SPECIES	19	prickle1a (ENSCHAG00000017976)	PPHLN1 (ENSCHAG00000017947)	frmd4a (ENSCHAG00000017925)	frmd4a (ENSCHAG00000017700)	prpf18 (ENSCHAG00000017573)	ENSCHAG00000017559	ENSCHAG00000017550	ENSCHAG00000017500	ENSCHAG00000017494	ENSCHAG00000017486	irf7 (ENSCHAG00000017478)	ENSCHAG00000017460	RASSF7 (ENSCHAG00000017448)	hrasa (ENSCHAG00000017435)	zgc:123278 (ENSCHAG00000017411) #21	tsg101a (ENSCHAG00000017309) ##21	ldha (ENSCHAG00000017273) #24	BRSK2 (ENSCHAG00000017077)	ABTB2 (ENSCHAG00000016981)	B4GALNT4 (ENSCHAG00000016361)	tmem86a (ENSCHAG00000016338) #17	spty2d1 (ENSCHAG00000016320) #18	ENSCHAG00000016164	ENSCHAG00000016146	th (ENSCHAG00000015392)	ldlrad3 (ENSCHAG00000015369)	trim44 (ENSCHAG00000015361)	FJX1 (ENSCHAG00000015355)	PAMR1 (ENSCHAG00000015347)	slc1a2b (ENSCHAG00000014288)	ENSCHAG00000014250
Denticle herring	MODERN SPECIES	8	ENSDCDG00000031173	SYT8 (ENSDCDG00000031171)	ENSDCDG00000031170	RASSF8 (ENSDCDG00000031168)	kras (ENSDCDG00000031166)	ENSDCDG00000031164	banp (ENSDCDG00000031160)	pdcd2l (ENSDCDG00000031158)	CES3 (ENSDCDG00000031156)	ascl1b (ENSDCDG00000031153)	irf7 (ENSDCDG00000031151)	ENSDCDG00000031146	RASSF7 (ENSDCDG00000031144)	LRRC56 (ENSDCDG00000031142)	hrasa (ENSDCDG00000031140)	tsg101a (ENSDCDG00000031137) ##21	ldha (ENSDCDG00000031135) #24	BRSK2 (ENSDCDG00000029711)	ABTB2 (ENSDCDG00000029624)	ENSDCDG00000029607	B4GALNT4 (ENSDCDG00000029506)	IGSF22 (ENSDCDG00000029503)	tmem86a (ENSDCDG00000029501) #17	spty2d1 (ENSDCDG00000029500) #18	ENSDCDG00000029498	ENSDCDG00000029496	th (ENSDCDG00000028194)	urahb (ENSDCDG00000028178)	ENSDCDG00000028176	ENSDCDG00000028174	GLG1 (ENSDCDG00000028070)
Otophysi	ANCESTRAL SPECIES	85							ENSGT00940000165300.b.a.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159
Characiphysae	ANCESTRAL SPECIES	57	ENSGT00940000172107	ENSGT00940000159937	ENSGT00940000177365	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00390000011705	ENSGT00940000165300.b.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159
Channel catfish	MODERN SPECIES	5	smu1a (ENSIPUG00000007118)	ikbkap (ENSIPUG00000007073)	tbc1d2 (ENSIPUG00000007033)	slc44a1 (ENSIPUG00000006949)	ABCA1 (ENSIPUG00000006410)	nipsnap3a (ENSIPUG00000006378)	ENSIPUG00000006359	ENSIPUG00000006345	thg1l (ENSIPUG00000006310)	ENSIPUG00000006285	irf7 (ENSIPUG00000006270)	phrf1 (ENSIPUG00000006177)	rassf7 (ENSIPUG00000006154)	lrrc56 (ENSIPUG00000006132)	hrasa (ENSIPUG00000006053)	tsg101 (ENSIPUG00000005937) ##21	ldha (ENSIPUG00000005875) #24	BRSK2 (ENSIPUG00000005805)	abtb2 (ENSIPUG00000005727)	B4GALNT4 (ENSIPUG00000005683)	IGSF22 (ENSIPUG00000005662)	tmem86a (ENSIPUG00000005654) #17	spty2d1 (ENSIPUG00000005617) #18	uevld (ENSIPUG00000005569) #21	ENSIPUG00000005499	th (ENSIPUG00000005463)	igf2b (ENSIPUG00000005412)	mrpl23 (ENSIPUG00000005383)	ENSIPUG00000005353	ENSIPUG00000005334	cpt1a (ENSIPUG00000005228)
Characiphysae_b	ANCESTRAL SPECIES	32	ENSGT00940000159937	ENSGT00940000177365	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00390000011705	ENSGT00940000165300.b.a.b	ENSGT00940000165300.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159
Characoidei	ANCESTRAL SPECIES	68	ENSGT00940000155007.m	ENSGT00390000013344	ENSGT00940000159937	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00390000011705	ENSGT00940000165300.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000161254	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a
Red-bellied piranha	MODERN SPECIES	474	smu1a (ENSPNAG00000002740)	ELP1 (ENSPNAG00000013695)	TBC1D2 (ENSPNAG00000013753)	SLC44A1 (ENSPNAG00000002941)	ABCA1 (ENSPNAG00000013884)	nipsnap3a (ENSPNAG00000013916)	ENSPNAG00000013928	thg1l (ENSPNAG00000013944)	ascl1b (ENSPNAG00000013961)	irf7 (ENSPNAG00000013981)	ENSPNAG00000003007	RASSF7 (ENSPNAG00000014034)	LRRC56 (ENSPNAG00000014068)	hrasa (ENSPNAG00000014085)	zgc:123278 (ENSPNAG00000003029) #21	tsg101a (ENSPNAG00000003036) ##21	ldha (ENSPNAG00000014176) #24
Mexicana tetra	MODERN SPECIES	23	TBC1D2 (ENSAMXG00000016417)	SLC44A1 (ENSAMXG00000016423)	ABCA1 (ENSAMXG00000016432)	nipsnap3a (ENSAMXG00000016441)	ENSAMXG00000029341	thg1l (ENSAMXG00000042416)	ascl1b (ENSAMXG00000024858)	irf7 (ENSAMXG00000016465)	ENSAMXG00000032122	ENSAMXG00000034068	ENSAMXG00000033302	RASSF7 (ENSAMXG00000032376)	LRRC56 (ENSAMXG00000016488)	hrasa (ENSAMXG00000035885)	zgc:123278 (ENSAMXG00000043654) #21	tsg101a (ENSAMXG00000016510) ##21	ldha (ENSAMXG00000032467) #24	ENSAMXG00000031527	ENSAMXG00000040387	ENSAMXG00000036441	ABTB2 (ENSAMXG00000016567)	B4GALNT4 (ENSAMXG00000030630)	ENSAMXG00000041914	IGSF22 (ENSAMXG00000016613)	tmem86a (ENSAMXG00000016631) #17	spty2d1 (ENSAMXG00000016641) #18	ENSAMXG00000016647	ENSAMXG00000016679	th (ENSAMXG00000016719)	igf2b (ENSAMXG00000031616)	ENSAMXG00000032145
Electric eel	MODERN SPECIES	259	ENSEEEG00000023090	ENSEEEG00000023091	ENSEEEG00000023093	SLC44A1 (ENSEEEG00000023094)	ABCA1 (ENSEEEG00000023098)	nipsnap3a (ENSEEEG00000023099)	ENSEEEG00000023100	thg1l (ENSEEEG00000023101)	ENSEEEG00000023102	irf7 (ENSEEEG00000023103)	ENSEEEG00000023105	RASSF7 (ENSEEEG00000023106)	LRRC56 (ENSEEEG00000023108)	hrasa (ENSEEEG00000023109)	zgc:123278 (ENSEEEG00000023111) #21	tsg101a (ENSEEEG00000023112) ##21	ldha (ENSEEEG00000023113) #24	BRSK2 (ENSEEEG00000023115)	ABTB2 (ENSEEEG00000023116)	B4GALNT4 (ENSEEEG00000023117)	IGSF22 (ENSEEEG00000023123)	tmem86a (ENSEEEG00000023128) #17	spty2d1 (ENSEEEG00000023130) #18	uevld (ENSEEEG00000023131) #21
Cyprinoidei	ANCESTRAL SPECIES	93									ENSGT00940000165300.b.a.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	296															ENSGT00940000155653.b.c.a	ENSGT00940000153903.a.b.a.b.a ##21	ENSGT00940000153201.b #24	ENSGT00940000157462.C.c.a.k.a	ENSGT00940000157661.e.a.a	ENSGT01050000244857.A.a.b.e.b	ENSGT00390000007101.d.b.f #17	ENSGT00940000154133.A.b #18	ENSGT00940000153903.a.b.b.c.b #21	ENSGT00940000161238.k.b	ENSGT00950000182885.C.a.a	ENSGT00940000160745.d.b	ENSGT00390000007739.a.b	ENSGT00940000164715.b.a	ENSGT01060000248595.b.a.b.a.n.a.b	ENSGT00940000169159.b	ENSGT00940000159535.g
Cyprininae_a	ANCESTRAL SPECIES	16							ENSGT01100000263529.a.a.a.a.a.a.a.b.b.b.a.b.b.b.a.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT00390000016453.b	ENSGT00950000182839.B.b.b.a	ENSGT00950000183205.b.a.a.a	ENSGT00940000160931.h	ENSGT00940000165300.b.a.a.b.b	ENSGT00940000159978.r.a	ENSGT00940000156334.a.a.e	ENSGT00940000155653.b.c.b.b	ENSGT00940000153903.a.b.a.b.a ##21	ENSGT00940000153201.b #24	ENSGT00940000157462.C.c.a.k.a	ENSGT00940000157661.e.a.a	ENSGT01050000244857.A.a.b.e.b	ENSGT00390000007101.d.b.f #17	ENSGT00940000154133.A.b #18	ENSGT00940000153903.a.b.b.c.b #21	ENSGT00940000161238.k.b	ENSGT00950000182885.C.a.a	ENSGT00940000160745.d.b	ENSGT00390000007739.b	ENSGT00940000164715.b.a	ENSGT01060000248595.b.a.b.a.n.a.b	ENSGT00940000169159.b	ENSGT00940000159535.g
Common carp reference	MODERN SPECIES	37	ENSCCRG00000015204	ENSCCRG00000006241	ENSCCRG00000073462	ENSCCRG00000045788	ENSCCRG00000064965	ENSCCRG00000045802	ENSCCRG00000046262	ENSCCRG00000029690	ENSCCRG00000019152	irf7 (ENSCCRG00000029695)	ENSCCRG00000029694	ENSCCRG00000064628	ENSCCRG00000029700	ENSCCRG00000029702	ENSCCRG00000029705	tsg101a (ENSCCRG00000031935) ##21	ldha (ENSCCRG00000062327) #24	ENSCCRG00000053385	ENSCCRG00000028735	ENSCCRG00000013489	tmem86a (ENSCCRG00000001012) #17	spty2d1 (ENSCCRG00000046624) #18	uevld (ENSCCRG00000046630) #21	ENSCCRG00000046641	th (ENSCCRG00000072377)	igf2b (ENSCCRG00000043613)	ENSCCRG00000069666	ENSCCRG00000082707	ENSCCRG00000021606	ENSCCRG00000031922	ENSCCRG00000031052
Golden-line barbel	MODERN SPECIES	841									ENSSGRG00000046760	ENSSGRG00000046761	ENSSGRG00000046762	irf7 (ENSSGRG00000046764)	ENSSGRG00000046881	hic1l (ENSSGRG00000046882)	hrasa (ENSSGRG00000046884)	tsg101a (ENSSGRG00000046910) ##21	ldha (ENSSGRG00000046941) #24	cwc25 (ENSSGRG00000047895)	BRSK2 (ENSSGRG00000047896)	ABTB2 (ENSSGRG00000047910)	B4GALNT4 (ENSSGRG00000047918)
Cyprininae	ANCESTRAL SPECIES	219														ENSGT00940000155653.b.c.b	ENSGT00940000153903.a.b.b.d #21	ENSGT00940000153903.a.b.a.b.b ##21	ENSGT00940000153201.a #24	ENSGT00940000157462.C.c.a.k.b	ENSGT00940000157661.e.a.b	ENSGT01050000244857.A.a.b.e.a	ENSGT00390000007101.d.b.e #17	ENSGT00940000154133.A.a #18	ENSGT00940000153903.a.b.b.c.a #21	ENSGT00940000161238.k.a	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a	ENSGT00440000039564.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	45	ENSCARG00000056435	ENSCARG00000056420	ENSCARG00000056396	ENSCARG00000056374	ENSCARG00000056332	ENSCARG00000056315	ENSCARG00000056301	ENSCARG00000056288	ENSCARG00000056271	ENSCARG00000056262	ENSCARG00000056246	ENSCARG00000056220	ENSCARG00000056208	hrasa (ENSCARG00000049756)	zgc:123278 (ENSCARG00000049744) #21	tsg101a (ENSCARG00000049670) ##21	ldha (ENSCARG00000049640) #24	ENSCARG00000049615	PCLAF (ENSCARG00000049593)	zgc:114188 (ENSCARG00000049498)	ENSCARG00000049482	ENSCARG00000049473	SRPK2 (ENSCARG00000047079)	ENSCARG00000047038	pus7 (ENSCARG00000046613)	DIAPH1 (ENSCARG00000046119)	pcdh2g13 (ENSCARG00000045955)	ENSCARG00000045928	ENSCARG00000045911	ENSCARG00000045886	ENSCARG00000045775
Goldfish	MODERN SPECIES	17	ENSCARG00000014149	ENSCARG00000014139	ENSCARG00000014136	ENSCARG00000014041	ENSCARG00000014023	ENSCARG00000014014	ENSCARG00000014005	ENSCARG00000013999	ENSCARG00000013983	hic1l (ENSCARG00000013980)	ENSCARG00000013974	irf7 (ENSCARG00000013957)	RASSF7 (ENSCARG00000013948)	ENSCARG00000013944	hrasa (ENSCARG00000013938)	tsg101a (ENSCARG00000013931) ##21	ENSCARG00000013870	ENSCARG00000013859	BRSK2 (ENSCARG00000013704)	ABTB2 (ENSCARG00000013681)	B4GALNT4 (ENSCARG00000013389)	tmem86a (ENSCARG00000013367) #17	spty2d1 (ENSCARG00000013365) #18	ENSCARG00000013357	th (ENSCARG00000013219)	igf2b (ENSCARG00000013203)	ENSCARG00000013197	mrpl23 (ENSCARG00000013181)	ENSCARG00000013069	nap1l4a (ENSCARG00000013043)	phlda2 (ENSCARG00000013035)
Cyprininae_a	ANCESTRAL SPECIES	154							ENSGT00390000016453.a	ENSGT00390000001545	ENSGT00950000182839.B.b.b.b	ENSGT00950000183205.b.a.a.b	ENSGT00940000160931.g	ENSGT00940000159978.r.b	ENSGT00940000156334.a.a.f	ENSGT00940000155653.b.c.b.a	ENSGT00940000153903.a.b.b.d #21	ENSGT00940000153903.a.b.a.b.b ##21	ENSGT00940000153201.a #24	ENSGT00940000157462.C.c.a.k.b	ENSGT00940000157661.e.a.b	ENSGT01050000244857.A.a.b.e.a	ENSGT00390000007101.d.b.e #17	ENSGT00940000154133.A.a #18	ENSGT00940000153903.a.b.b.c.a #21	ENSGT00940000161238.k.a	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a	ENSGT00440000039564.a.b
Golden-line barbel	MODERN SPECIES	638													ENSSGRG00000027435	hic1l (ENSSGRG00000027433)	hrasa (ENSSGRG00000027404)	tsg101a (ENSSGRG00000027392) ##21	ldha (ENSSGRG00000026240) #24	BRSK2 (ENSSGRG00000026214)	ABTB2 (ENSSGRG00000025831)	B4GALNT4 (ENSSGRG00000025821)
Common carp reference	MODERN SPECIES	33	wwp2 (ENSCCRG00000037246)	frs2b (ENSCCRG00000064747)	nup160 (ENSCCRG00000066074)	ENSCCRG00000064714	ENSCCRG00000077141	ENSCCRG00000046548	ENSCCRG00000046541	ENSCCRG00000046537	ENSCCRG00000055099	irf7 (ENSCCRG00000073524)	hic1l (ENSCCRG00000029699)	ENSCCRG00000050923	ENSCCRG00000058212	ENSCCRG00000031946	zgc:123278 (ENSCCRG00000031949) #21	tsg101a (ENSCCRG00000031963) ##21	ldha (ENSCCRG00000080245) #24	ENSCCRG00000028788	ENSCCRG00000065686	ENSCCRG00000028725	tmem86a (ENSCCRG00000055822) #17	spty2d1 (ENSCCRG00000032466) #18	uevld (ENSCCRG00000032457) #21	ENSCCRG00000032449	th (ENSCCRG00000028165)	igf2b (ENSCCRG00000077650)	mrpl23 (ENSCCRG00000021780)	ENSCCRG00000021778	ENSCCRG00000031991	ENSCCRG00000076888	nap1l4a (ENSCCRG00000053707)
Zebrafish	MODERN SPECIES	17	lrrc61 (ENSDARG00000077357)	cib2 (ENSDARG00000102820)	ENSDARG00000109803	TBC1D2B (ENSDARG00000061986)	hic1l (ENSDARG00000045660)	irf7 (ENSDARG00000045661)	ENSDARG00000075252	RASSF7 (ENSDARG00000079917)	LRRC56 (ENSDARG00000096081)	hrasa (ENSDARG00000098497)	zgc:123278 (ENSDARG00000096110) #21	ENSDARG00000112209	ENSDARG00000103976	ENSDARG00000096060	ccl35.2 (ENSDARG00000070378)	tsg101a (ENSDARG00000040854) ##21	ldha (ENSDARG00000101251) #24	ENSDARG00000100953	ENSDARG00000102727	BRSK2 (ENSDARG00000061421)	ABTB2 (ENSDARG00000062000)	B4GALNT4 (ENSDARG00000046150)	tmem86a (ENSDARG00000044034) #17	spty2d1 (ENSDARG00000033889) #18	ENSDARG00000095586	ENSDARG00000094163	uevld (ENSDARG00000009266) #21	ENSDARG00000051836	th (ENSDARG00000030621)	igf2b (ENSDARG00000033307)	mrpl23 (ENSDARG00000045696)
Euteleosteomorpha	ANCESTRAL SPECIES	20	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Protacanthopterygii	ANCESTRAL SPECIES	178																ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00990000203541.a.a.a.a.a	ENSGT00940000157862	ENSGT00390000004044	ENSGT00940000158039.h	ENSGT00530000063113.A.q.g	ENSGT00390000006367.c.w	ENSGT00940000155057.vb.a.b	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.b	ENSGT00940000153567.a.a.b.a.b	ENSGT00940000153372.A.f	ENSGT00940000159379.a.b	ENSGT00940000154479.a.a.b.d.b	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.a.b.a #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b
Huchen	MODERN SPECIES	212									MAGI2 (ENSHHUG00000002916)	ENSHHUG00000003121	ENSHHUG00000003127	ENSHHUG00000003135	ENSHHUG00000003143	ENSHHUG00000003153	ENSHHUG00000003162	tsg101a (ENSHHUG00000003174) ##21	ldha (ENSHHUG00000003228) #24	BRSK2 (ENSHHUG00000003310)
Salmoninae_a	ANCESTRAL SPECIES	116											ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.b	ENSGT00940000153567.a.a.b.a.b.d	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.b #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00390000009380.e.b	ENSGT00990000203541.a.a.a.a.a.k	ENSGT00940000157862.v	ENSGT00390000004044.h	ENSGT00940000158039.h.u	ENSGT00530000063113.A.q.h	ENSGT00390000006367.c.w.b	ENSGT00940000155057.vb.a.b	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.b	ENSGT00940000153567.a.a.b.a.b.d	ENSGT00940000153372.A.f.g	ENSGT00940000159379.b	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.a.a #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	5													ENSGT00940000155057.wb.g	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.a.a #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159
Chinook salmon	MODERN SPECIES	10	ENSOTSG00005021146	ENSOTSG00005021144	szl (ENSOTSG00005021141)	ENSOTSG00005021140	ENSOTSG00005021138	NUAK1 (ENSOTSG00005021137)	zgc:162707 (ENSOTSG00005021134)	ehhadh (ENSOTSG00005021117)	tmem41aa (ENSOTSG00005021112)	ENSOTSG00005021110	ENSOTSG00005021105	MAGI2 (ENSOTSG00005020989)	ENSOTSG00005020983	ENSOTSG00005020982	ENSOTSG00005020979	tsg101a (ENSOTSG00005020677) ##21	ldha (ENSOTSG00005020538) #24	BRSK2 (ENSOTSG00005020135)	ABTB2 (ENSOTSG00005020084)	B4GALNT4 (ENSOTSG00005019872)	tmem86a (ENSOTSG00005019865) #17	spty2d1 (ENSOTSG00005019863) #18	uevld (ENSOTSG00005019862) #21	ENSOTSG00005019859	CPT1A (ENSOTSG00005019296)	ENSOTSG00005019284	igf2b (ENSOTSG00005019282)	ENSOTSG00005019280	mrpl23 (ENSOTSG00005027223)	OSBPL5 (ENSOTSG00005025174)	phlda2 (ENSOTSG00005025163)
Coho salmon	MODERN SPECIES	14	ENSOKIG00005022211	yars2 (ENSOKIG00005022190)	pparab (ENSOKIG00005022177)	WNT7B (ENSOKIG00005022082)	fbln1 (ENSOKIG00005019662)	AKR1D1 (ENSOKIG00005019493)	ENSOKIG00005018197	MON2 (ENSOKIG00005017719)	ppm1h (ENSOKIG00005017649)	AVPR1A (ENSOKIG00005017635)	ENSOKIG00005017629	MAGI2 (ENSOKIG00005017510)	ENSOKIG00005017464	ENSOKIG00005017433	ENSOKIG00005017427	tsg101a (ENSOKIG00005017385) ##21	ldha (ENSOKIG00005017158) #24	ENSOKIG00005017142	BRSK2 (ENSOKIG00005015751)	ABTB2 (ENSOKIG00005015533)	ENSOKIG00005015519	B4GALNT4 (ENSOKIG00005015145)	tmem86a (ENSOKIG00005015121) #17	spty2d1 (ENSOKIG00005015109) #18	ENSOKIG00005015074	ENSOKIG00005015052	CPT1A (ENSOKIG00005014443)	ENSOKIG00005014372	igf2b (ENSOKIG00005014364)	ENSOKIG00005014359	ENSOKIG00005014352
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000001133	stmn1b (ENSOMYG00000001160)	paqr7b (ENSOMYG00000060010)	ENSOMYG00000060511	ENSOMYG00000002750	ENSOMYG00000004391	ENSOMYG00000056916	ENSOMYG00000004431	ENSOMYG00000004470	ENSOMYG00000057940	ENSOMYG00000006194	ENSOMYG00000048081	ENSOMYG00000006386	ENSOMYG00000059005	ENSOMYG00000006717	tsg101a (ENSOMYG00000006944) ##21	ldha (ENSOMYG00000007045) #24	ENSOMYG00000068260	ENSOMYG00000069379	ENSOMYG00000008517	ENSOMYG00000011121	ENSOMYG00000011634	tmem86a (ENSOMYG00000011794) #17	spty2d1 (ENSOMYG00000011804) #18	ENSOMYG00000011821	ENSOMYG00000011835	ENSOMYG00000050092	cpt1ab (ENSOMYG00000011953)	ENSOMYG00000012196	igf2b (ENSOMYG00000012223)	ENSOMYG00000012249
Salmo	ANCESTRAL SPECIES	50	ENSGT00940000157725.r	ENSGT00550000074827.fb	ENSGT00940000157796	ENSGT00940000155399.b	ENSGT00940000153533.a	ENSGT00940000159422.b	ENSGT00940000155491.c	ENSGT00940000157447.c	ENSGT00510000047494	ENSGT00940000160162.g	ENSGT00940000154091.a.b	ENSGT00940000154996.a.b.a	ENSGT00940000155057.wb.g	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.b #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159
River trout	MODERN SPECIES	37	slc25a44a (ENSSTUG00000039660)	skic8 (ENSSTUG00000039670)	CRABP1 (ENSSTUG00000039709)	sin3aa (ENSSTUG00000039760)	PTPN9 (ENSSTUG00000039923)	snupn (ENSSTUG00000040164)	snx33 (ENSSTUG00000040181)	ENSSTUG00000040186	CSPG4 (ENSSTUG00000040193)	ENSSTUG00000040243	LINGO1 (ENSSTUG00000040265)	MAGI2 (ENSSTUG00000040291)	ENSSTUG00000041124	ENSSTUG00000041394	ENSSTUG00000041408	tsg101a (ENSSTUG00000041475) ##21	ldha (ENSSTUG00000041545) #24	ENSSTUG00000041704	BRSK2 (ENSSTUG00000041784)	ENSSTUG00000043237	ABTB2 (ENSSTUG00000043264)	B4GALNT4 (ENSSTUG00000043630)	tmem86a (ENSSTUG00000043770) #17	spty2d1 (ENSSTUG00000043779) #18	ENSSTUG00000043787	ENSSTUG00000043913	ENSSTUG00000043962	ENSSTUG00000044477	igf2b (ENSSTUG00000000831)	mrpl23 (ENSSTUG00000002282)	ENSSTUG00000002328
Atlantic salmon	MODERN SPECIES	1	sin3aa (ENSSSAG00000044150)	ptpn9 (ENSSSAG00000043735)	snupn (ENSSSAG00000043678)	snx33 (ENSSSAG00000043663)	cspg4 (ENSSSAG00000043647)	ENSSSAG00000043631	ENSSSAG00000119236	ENSSSAG00000118540	ENSSSAG00000092278	ENSSSAG00000042057	ENSSSAG00000085355	ENSSSAG00000091245	ENSSSAG00000122007	ENSSSAG00000040839	ENSSSAG00000041054	tsg101a (ENSSSAG00000093918) ##21	ldha (ENSSSAG00000041413) #24	ENSSSAG00000041623	ENSSSAG00000110204	ENSSSAG00000047838	ENSSSAG00000049007	tmem86a (ENSSSAG00000106050) #17	spty2d1 (ENSSSAG00000049082) #18	uevld (ENSSSAG00000049123) #21	ENSSSAG00000084303	ENSSSAG00000098753	ENSSSAG00000050712	ENSSSAG00000118027	igf2b (ENSSSAG00000051052)	RM23 (ENSSSAG00000121390)	ENSSSAG00000051329
Northern pike	MODERN SPECIES	18	ENSELUG00000022529	ENSELUG00000027859	gsto1 (ENSELUG00000022497)	spty2d1 (ENSELUG00000022464) #18	tmem86a (ENSELUG00000022437) #17	B4GALNT4 (ENSELUG00000019193)	ENSELUG00000025977	ABTB2 (ENSELUG00000019086)	ENSELUG00000034031	igf2b (ENSELUG00000029387)	ENSELUG00000022230	mrpl23 (ENSELUG00000022256)	OSBPL5 (ENSELUG00000022285)	phlda2 (ENSELUG00000022294)	nap1l4a (ENSELUG00000022314)	tsg101a (ENSELUG00000022386) ##21	ldha (ENSELUG00000022428) #24	BRSK2 (ENSELUG00000014751)	ENSELUG00000028459	ENSELUG00000014926	ENSELUG00000033596	MAGI2 (ENSELUG00000001736)	ENSELUG00000032975	ENSELUG00000024839	ENSELUG00000001735	ENSELUG00000028772	ENSELUG00000031792
Acanthomorphata	ANCESTRAL SPECIES	28	ENSGT00940000180696	ENSGT00940000154963	ENSGT00810000125439.A	ENSGT00950000183093.B.a.a	ENSGT00390000014757	ENSGT00940000158287	ENSGT00940000157089.B	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Cod	MODERN SPECIES	22	ENSGMOG00000013409	hal (ENSGMOG00000010242)	ELK3 (ENSGMOG00000033543)	CDK17 (ENSGMOG00000010215)	ENSGMOG00000035405	camk1db (ENSGMOG00000010199)	dhtkd1 (ENSGMOG00000010176)	ENSGMOG00000010163	ENSGMOG00000033453	ENSGMOG00000025316	ENSGMOG00000028664	ENSGMOG00000010137	ENSGMOG00000010126	ENSGMOG00000034679	ENSGMOG00000012695	tsg101a (ENSGMOG00000012693) ##21	ldha (ENSGMOG00000012687) #24	ENSGMOG00000024167	ENSGMOG00000002447	ENSGMOG00000004364	ENSGMOG00000025391	tmem86a (ENSGMOG00000028528) #17	spty2d1 (ENSGMOG00000037148) #18	uevld (ENSGMOG00000005684) #21	ENSGMOG00000005640	ENSGMOG00000010709	ENSGMOG00000010694	unc45a (ENSGMOG00000010673)	ENSGMOG00000010656	furinb (ENSGMOG00000010637)	accs (ENSGMOG00000003409)
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Pinecone sodierfish	MODERN SPECIES	20	pdhx (ENSMMDG00005024499)	ENSMMDG00005024502	slc1a2b (ENSMMDG00005024512)	PAMR1 (ENSMMDG00005024536)	FJX1 (ENSMMDG00005024537)	trim44 (ENSMMDG00005024538)	LDLRAD3 (ENSMMDG00005024540)	ascl1b (ENSMMDG00005024542)	irf7 (ENSMMDG00005024543)	ENSMMDG00005024544	ENSMMDG00005024545	RASSF7 (ENSMMDG00005024547)	LRRC56 (ENSMMDG00005024549)	hrasb (ENSMMDG00005004059)	ENSMMDG00005004074 #21	tsg101a (ENSMMDG00005004097) ##21	ldha (ENSMMDG00005004133) #24	BRSK2 (ENSMMDG00005004205)	ABTB2 (ENSMMDG00005004302)	B4GALNT4 (ENSMMDG00005004587)	IGSF22 (ENSMMDG00005004875)	tmem86a (ENSMMDG00005004878) #17	spty2d1 (ENSMMDG00005004880) #18	ENSMMDG00005004883	ENSMMDG00005004896	CPT1A (ENSMMDG00005004966)	ENSMMDG00005005575	mrpl23 (ENSMMDG00005005579)	igf2b (ENSMMDG00005005581)	th (ENSMMDG00005005585)	nap1l4a (ENSMMDG00005005591)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Tiger tail seahorse	MODERN SPECIES	438	ehf (ENSHCOG00000009804)	pdhx (ENSHCOG00000009799)	ENSHCOG00000009765	slc1a2b (ENSHCOG00000009734)	PAMR1 (ENSHCOG00000009719)	FJX1 (ENSHCOG00000000793)	trim44 (ENSHCOG00000009638)	ldlrad3 (ENSHCOG00000009621)	ascl1b (ENSHCOG00000009583)	ENSHCOG00000009571	irf7 (ENSHCOG00000009561)	ENSHCOG00000009556	ENSHCOG00000009538	hrasb (ENSHCOG00000009530)	zgc:123278 (ENSHCOG00000009516) #21	tsg101a (ENSHCOG00000009506) ##21	ldha (ENSHCOG00000009461) #24	BRSK2 (ENSHCOG00000009433)	ABTB2 (ENSHCOG00000009387)	B4GALNT4 (ENSHCOG00000009344)	tmem86a (ENSHCOG00000009289) #17	spty2d1 (ENSHCOG00000009275) #18	uevld (ENSHCOG00000009237) #21	ENSHCOG00000009226	CPT1A (ENSHCOG00000009187)	ENSHCOG00000009124	mrpl23 (ENSHCOG00000009092)	igf2b (ENSHCOG00000009061)	th (ENSHCOG00000009036)	nap1l4a (ENSHCOG00000008558)	phlda2 (ENSHCOG00000008547)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Pomacentridae_A	ANCESTRAL SPECIES	27	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Amphiprion	ANCESTRAL SPECIES	21	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Orange clownfish	MODERN SPECIES	18	pdhx (ENSAPEG00000009229)	ENSAPEG00000009285	slc1a2b (ENSAPEG00000009316)	PAMR1 (ENSAPEG00000009342)	FJX1 (ENSAPEG00000009359)	trim44 (ENSAPEG00000009379)	LDLRAD3 (ENSAPEG00000009389)	ENSAPEG00000009404	ascl1b (ENSAPEG00000009432)	irf7 (ENSAPEG00000009447)	RASSF7 (ENSAPEG00000009490)	ENSAPEG00000009517	LRRC56 (ENSAPEG00000009535)	hrasb (ENSAPEG00000009546)	zgc:123278 (ENSAPEG00000009560) #21	tsg101a (ENSAPEG00000009574) ##21	ldha (ENSAPEG00000009620) #24	BRSK2 (ENSAPEG00000009703)	ABTB2 (ENSAPEG00000009791)	B4GALNT4 (ENSAPEG00000009874)	tmem86a (ENSAPEG00000009944) #17	spty2d1 (ENSAPEG00000009961) #18	uevld (ENSAPEG00000009988) #21	ENSAPEG00000010086	CPT1A (ENSAPEG00000010158)	ENSAPEG00000010250	mrpl23 (ENSAPEG00000010298)	igf2b (ENSAPEG00000010328)	th (ENSAPEG00000010338)	nap1l4a (ENSAPEG00000010404)	phlda2 (ENSAPEG00000010461)
Clown anemonefish	MODERN SPECIES	1422																tsg101a (ENSAOCG00000019314) ##21	ldha (ENSAOCG00000019278) #24	BRSK2 (ENSAOCG00000019243)
Spiny chromis	MODERN SPECIES	73	ehf (ENSAPOG00000023227)	pdhx (ENSAPOG00000023280)	ENSAPOG00000023309	slc1a2b (ENSAPOG00000023393)	PAMR1 (ENSAPOG00000023444)	FJX1 (ENSAPOG00000023450)	trim44 (ENSAPOG00000023490)	LDLRAD3 (ENSAPOG00000023510)	ascl1b (ENSAPOG00000023536)	irf7 (ENSAPOG00000023591)	ENSAPOG00000023634	RASSF7 (ENSAPOG00000023652)	LRRC56 (ENSAPOG00000023670)	hrasb (ENSAPOG00000023684)	zgc:123278 (ENSAPOG00000023694) #21	tsg101a (ENSAPOG00000023730) ##21	ldha (ENSAPOG00000023749) #24	BRSK2 (ENSAPOG00000023798)	ABTB2 (ENSAPOG00000023899)	B4GALNT4 (ENSAPOG00000023944)
Bicolor damselfish	MODERN SPECIES	479					PAMR1 (ENSSPAG00000007602)	FJX1 (ENSSPAG00000007587)	trim44 (ENSSPAG00000007572)	LDLRAD3 (ENSSPAG00000007510)	ascl1b (ENSSPAG00000007499)	irf7 (ENSSPAG00000007459)	ENSSPAG00000007434	ENSSPAG00000007407	ENSSPAG00000007389	hrasb (ENSSPAG00000007357)	ENSSPAG00000007341 #21	tsg101a (ENSSPAG00000007280) ##21	ldha (ENSSPAG00000007238) #24	BRSK2 (ENSSPAG00000007182)
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Nile tilapia	MODERN SPECIES	19	ehf (ENSONIG00000014592)	pdhx (ENSONIG00000014588)	ENSONIG00000027761	ENSONIG00000034287	slc1a2b (ENSONIG00000014579)	PAMR1 (ENSONIG00000014578)	FJX1 (ENSONIG00000014577)	trim44 (ENSONIG00000014576)	ascl1b (ENSONIG00000020440)	irf7 (ENSONIG00000014571)	ENSONIG00000014569	RASSF7 (ENSONIG00000014567)	LRRC56 (ENSONIG00000014563)	hras (ENSONIG00000032375)	zgc:123278 (ENSONIG00000014558) #21	tsg101a (ENSONIG00000014551) ##21	ldha (ENSONIG00000014546) #24	BRSK2 (ENSONIG00000014540)	ABTB2 (ENSONIG00000014537)	B4GALNT4 (ENSONIG00000014531)	tmem86a (ENSONIG00000038141) #17	spty2d1 (ENSONIG00000014525) #18	uevld (ENSONIG00000014522) #21	ENSONIG00000014519	CPT1A (ENSONIG00000014502)	ENSONIG00000014501	mrpl23 (ENSONIG00000033240)	igf2b (ENSONIG00000039552)	th (ENSONIG00000014492)	nap1l4a (ENSONIG00000014488)	phlda2 (ENSONIG00000020439)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00940000157405.c.a	ENSGT00940000163759.f.a.a.a.b.b.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
P. nyererei	MODERN SPECIES	373	lrrc4ca (ENSPNYG00000014911)	ehf (ENSPNYG00000014926)	pdhx (ENSPNYG00000014936)	slc1a2b (ENSPNYG00000014946)	PAMR1 (ENSPNYG00000014973)	FJX1 (ENSPNYG00000014989)	trim44 (ENSPNYG00000014999)	LDLRAD3 (ENSPNYG00000015010)	ascl1b (ENSPNYG00000015020)	irf7 (ENSPNYG00000015033)	ENSPNYG00000015069	RASSF7 (ENSPNYG00000015084)	ENSPNYG00000015110	hrasb (ENSPNYG00000015124)	zgc:123278 (ENSPNYG00000015139) #21	tsg101a (ENSPNYG00000015156) ##21	ldha (ENSPNYG00000015184) #24	BRSK2 (ENSPNYG00000015210)	ABTB2 (ENSPNYG00000015269)	B4GALNT4 (ENSPNYG00000015331)	tmem86a (ENSPNYG00000015365) #17	spty2d1 (ENSPNYG00000015376) #18	ENSPNYG00000015410	uevld (ENSPNYG00000015419) #21	ENSPNYG00000015438	CPT1A (ENSPNYG00000015485)	ENSPNYG00000015527	mrpl23 (ENSPNYG00000015541)	igf2b (ENSPNYG00000015570)	th (ENSPNYG00000015595)	nap1l4a (ENSPNYG00000015622)
Haplochromini_B	ANCESTRAL SPECIES	40	ENSGT00940000157405.c.a	ENSGT00940000163759.f.a.a.a.b.b.a.b.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Eastern happy	MODERN SPECIES	19	ehf (ENSACLG00000000532)	pdhx (ENSACLG00000000724)	slc1a2b (ENSACLG00000000753)	PAMR1 (ENSACLG00000000795)	FJX1 (ENSACLG00000000811)	trim44 (ENSACLG00000000820)	LDLRAD3 (ENSACLG00000001043)	ascl1b (ENSACLG00000001059)	irf7 (ENSACLG00000001080)	ENSACLG00000001115	RASSF7 (ENSACLG00000001135)	LRRC56 (ENSACLG00000001154)	hrasb (ENSACLG00000001181)	ENSACLG00000001204	zgc:123278 (ENSACLG00000001212) #21	tsg101a (ENSACLG00000001235) ##21	ldha (ENSACLG00000001291) #24	BRSK2 (ENSACLG00000001508)	ENSACLG00000001556	ENSACLG00000001561	ABTB2 (ENSACLG00000001589)	B4GALNT4 (ENSACLG00000002102)	ENSACLG00000002124	tmem86a (ENSACLG00000002146) #17	spty2d1 (ENSACLG00000002153) #18	uevld (ENSACLG00000002158) #21	ENSACLG00000002172	CPT1A (ENSACLG00000002222)	ENSACLG00000002284	mrpl23 (ENSACLG00000002565)	igf2b (ENSACLG00000002592)
Zebra mbuna	MODERN SPECIES	1110	rag2 (ENSMZEG00005017702)	ehf (ENSMZEG00005017684)	pdhx (ENSMZEG00005017679)	slc1a2b (ENSMZEG00005017667)	PAMR1 (ENSMZEG00005017643)	FJX1 (ENSMZEG00005017634)	trim44 (ENSMZEG00005017628)	LDLRAD3 (ENSMZEG00005017622)	ascl1b (ENSMZEG00005017616)	irf7 (ENSMZEG00005017610)	ENSMZEG00005017602	RASSF7 (ENSMZEG00005017596)	ENSMZEG00005017590	hrasb (ENSMZEG00005017583)	zgc:123278 (ENSMZEG00005017576) #21	tsg101a (ENSMZEG00005017560) ##21	ldha (ENSMZEG00005017554) #24	ENSMZEG00005017545	BRSK2 (ENSMZEG00005017531)	ABTB2 (ENSMZEG00005017523)	B4GALNT4 (ENSMZEG00005017511)	tmem86a (ENSMZEG00005017503) #17	spty2d1 (ENSMZEG00005017500) #18	uevld (ENSMZEG00005017493) #21	ENSMZEG00005017488	CPT1A (ENSMZEG00005017475)	ENSMZEG00005017464	mrpl23 (ENSMZEG00005017456)	igf2b (ENSMZEG00005017446)	th (ENSMZEG00005017439)	nap1l4a (ENSMZEG00005017428)
Burton s mouthbrooder	MODERN SPECIES	626												RASSF7 (ENSHBUG00000011965)	ENSHBUG00000011981	hrasb (ENSHBUG00000011998)	zgc:123278 (ENSHBUG00000012003) #21	tsg101a (ENSHBUG00000012014) ##21	ldha (ENSHBUG00000012051) #24	BRSK2 (ENSHBUG00000012065)	ABTB2 (ENSHBUG00000012078)	B4GALNT4 (ENSHBUG00000012086)	tmem86a (ENSHBUG00000012095) #17	spty2d1 (ENSHBUG00000012102) #18	uevld (ENSHBUG00000012112) #21	ENSHBUG00000012180	CPT1A (ENSHBUG00000012303)	ENSHBUG00000012346
Lyretail cichlid	MODERN SPECIES	305	rag1 (ENSNBRG00000005769)	rag2 (ENSNBRG00000005790)	ehf (ENSNBRG00000005836)	pdhx (ENSNBRG00000005863)	slc1a2b (ENSNBRG00000005920)	PAMR1 (ENSNBRG00000005954)	FJX1 (ENSNBRG00000005962)	trim44 (ENSNBRG00000005966)	LDLRAD3 (ENSNBRG00000005978)	ascl1b (ENSNBRG00000006042)	irf7 (ENSNBRG00000006057)	ENSNBRG00000006089	RASSF7 (ENSNBRG00000006154)	ENSNBRG00000006170	hrasb (ENSNBRG00000006222)	tsg101a (ENSNBRG00000006692) ##21	ldha (ENSNBRG00000006820) #24	BRSK2 (ENSNBRG00000006861)	ABTB2 (ENSNBRG00000006897)	B4GALNT4 (ENSNBRG00000006940)	tmem86a (ENSNBRG00000007062) #17	spty2d1 (ENSNBRG00000007070) #18	ENSNBRG00000007079	ENSNBRG00000007083	CPT1A (ENSNBRG00000007101)	ENSNBRG00000007151	mrpl23 (ENSNBRG00000007183)	igf2b (ENSNBRG00000007203)	th (ENSNBRG00000007209)	nap1l4a (ENSNBRG00000007252)	phlda2 (ENSNBRG00000007287)
Midas cichlid	MODERN SPECIES	107		ehf (ENSACIG00000001410)	pdhx (ENSACIG00000001382)	ENSACIG00000001375	slc1a2b (ENSACIG00000001342)	PAMR1 (ENSACIG00000001270)	FJX1 (ENSACIG00000001263)	trim44 (ENSACIG00000001250)	LDLRAD3 (ENSACIG00000001209)	ascl1b (ENSACIG00000001189)	irf7 (ENSACIG00000000883)	ENSACIG00000000840	ENSACIG00000000724	hrasb (ENSACIG00000000699)	zgc:123278 (ENSACIG00000000684) #21	tsg101a (ENSACIG00000000649) ##21	ldha (ENSACIG00000000628) #24	ENSACIG00000000617	BRSK2 (ENSACIG00000000572)	ABTB2 (ENSACIG00000000525)	B4GALNT4 (ENSACIG00000000438)	tmem86a (ENSACIG00000000417) #17	ENSACIG00000000333	uevld (ENSACIG00000000230) #21	ENSACIG00000000153	CPT1A (ENSACIG00000024332)	ENSACIG00000024328	mrpl23 (ENSACIG00000024327)
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00940000153362.b
Oryzias	ANCESTRAL SPECIES	27					ENSGT01030000234567.B.a.a.b.a.a.c.a	ENSGT00940000160682.b.c.a	ENSGT00940000157236.j	ENSGT00730000111146	ENSGT01010000222336.b.a.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b
Oryzias_b	ANCESTRAL SPECIES		ENSGT00400000025006	ENSGT00940000153533.b	ENSGT00940000153577.C	ENSGT00390000017113	ENSGT00940000162243	ENSGT01030000234567.B.a.a.b.a.a.c.a	ENSGT00940000160682.b.c.a	ENSGT00940000157236.j	ENSGT00730000111146	ENSGT01010000222336.b.a.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b
Javanese ricefish	MODERN SPECIES	20	utp4 (ENSOJAG00000016200)	setd6 (ENSOJAG00000016297)	ENSOJAG00000016421	B3GNT9 (ENSOJAG00000016429)	ENSOJAG00000016440	TAFA5 (ENSOJAG00000016560)	brd1b (ENSOJAG00000016578)	ftsj1 (ENSOJAG00000016593)	ENSOJAG00000016602	irf7 (ENSOJAG00000016615)	ENSOJAG00000016692	RASSF7 (ENSOJAG00000016754)	ENSOJAG00000016767	hrasb (ENSOJAG00000016776)	zgc:123278 (ENSOJAG00000016805) #21	tsg101a (ENSOJAG00000016819) ##21	ldha (ENSOJAG00000016832) #24	BRSK2 (ENSOJAG00000016989)	B4GALNT4 (ENSOJAG00000018050)	ENSOJAG00000018148	ENSOJAG00000018162	ENSOJAG00000018182	tmem86a (ENSOJAG00000018198) #17	spty2d1 (ENSOJAG00000000097) #18	ENSOJAG00000000124	ENSOJAG00000000160	CPT1A (ENSOJAG00000000267)	ENSOJAG00000000379	mrpl23 (ENSOJAG00000000400)	igf2b (ENSOJAG00000000406)	th (ENSOJAG00000000427)
Indian medaka	MODERN SPECIES	15	chtf8 (ENSOMEG00000018024)	utp4 (ENSOMEG00000018096)	setd6 (ENSOMEG00000018132)	bbs2 (ENSOMEG00000018176)	B3GNT9 (ENSOMEG00000018203)	ENSOMEG00000018318	TAFA5 (ENSOMEG00000018352)	brd1b (ENSOMEG00000018434)	ftsj1 (ENSOMEG00000018497)	ENSOMEG00000018543	irf7 (ENSOMEG00000018603)	ENSOMEG00000018652	RASSF7 (ENSOMEG00000018673)	ENSOMEG00000018696	hrasb (ENSOMEG00000018719)	tsg101a (ENSOMEG00000018807) ##21	ldha (ENSOMEG00000018751) #24	ENSOMEG00000000486	BRSK2 (ENSOMEG00000018830)	ABTB2 (ENSOMEG00000018865)	B4GALNT4 (ENSOMEG00000018898)	tmem86a (ENSOMEG00000018919) #17	spty2d1 (ENSOMEG00000018932) #18	uevld (ENSOMEG00000018963) #21	ENSOMEG00000019015	CPT1A (ENSOMEG00000019071)	ENSOMEG00000019110	mrpl23 (ENSOMEG00000019132)	ENSOMEG00000019150	ENSOMEG00000019252	exoc3l1 (ENSOMEG00000000507)
Oryzias_a	ANCESTRAL SPECIES	1								ENSGT00940000157236.j	ENSGT00730000111146	ENSGT01010000222336.b.a.b.b	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.d	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000177179
Japanese Medaka HdrR	MODERN SPECIES	20								brd1b (ENSORLG00000022443)	ftsj1 (ENSORLG00000028355)	ENSORLG00000018898	ENSORLG00000028228	RASSF7 (ENSORLG00000025425)	ENSORLG00000024757	hrasb (ENSORLG00000018912)	zgc:123278 (ENSORLG00000023170) #21	tsg101a (ENSORLG00000030185) ##21	ldha (ENSORLG00000003767) #24	ENSORLG00000027403	B4GALNT4 (ENSORLG00000029452)	ENSORLG00000026399	tmem86a (ENSORLG00000018399) #17	spty2d1 (ENSORLG00000028319) #18	ENSORLG00000026474	ENSORLG00000023820	CPT1A (ENSORLG00000030183)	ENSORLG00000029604	mrpl23 (ENSORLG00000025383)	ENSORLG00000028425	ENSORLG00000022958	ENSORLG00000024400	ENSORLG00000024914
Chinese medaka	MODERN SPECIES	3323																tsg101a (ENSOSIG00000001994) ##21
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Mangrove rivulus	MODERN SPECIES	68	ehf (ENSKMAG00000002490)	ENSKMAG00000002304	pdhx (ENSKMAG00000002229)	ENSKMAG00000002208	slc1a2b (ENSKMAG00000002187)	PAMR1 (ENSKMAG00000002167)	FJX1 (ENSKMAG00000002155)	trim44 (ENSKMAG00000002131)	ldlrad3 (ENSKMAG00000002119)	ascl1b (ENSKMAG00000002102)	irf7 (ENSKMAG00000002052)	ENSKMAG00000002036	ENSKMAG00000002025	hrasb (ENSKMAG00000001922)	zgc:123278 (ENSKMAG00000001912) #21	tsg101a (ENSKMAG00000001851) ##21	ldha (ENSKMAG00000001800) #24	BRSK2 (ENSKMAG00000001715)	ABTB2 (ENSKMAG00000001552)	B4GALNT4 (ENSKMAG00000001525)
Turquoise killifish	MODERN SPECIES	1622	ehf (ENSNFUG00015017449)	PDHX (ENSNFUG00015017454)	slc1a2b (ENSNFUG00015017486)	PAMR1 (ENSNFUG00015017632)	ENSNFUG00015017641	FJX1 (ENSNFUG00015017644)	TRIM44 (ENSNFUG00015017652)	LDLRAD3 (ENSNFUG00015017659)	ascl1b (ENSNFUG00015017664)	IRF7 (ENSNFUG00015017672)	PHRF1 (ENSNFUG00015017699)	RASSF7 (ENSNFUG00015017706)	ENSNFUG00015017711	LRRC56 (ENSNFUG00015017716)	hrasb (ENSNFUG00015017722)	tsg101a (ENSNFUG00015017732) ##21	ldha (ENSNFUG00015017749) #24	BRSK2 (ENSNFUG00015017796)	ENSNFUG00015017926	ENSNFUG00015017930	ABTB2 (ENSNFUG00015017935)	B4GALNT4 (ENSNFUG00015017957)	ENSNFUG00015018036	ENSNFUG00015018039	SCARA3 (ENSNFUG00015018041)	ENSNFUG00015018046	TMEM86A (ENSNFUG00015018051) #17	SPTY2D1 (ENSNFUG00015018059)	UEVLD (ENSNFUG00015018066) #21	ENSNFUG00015018089	CPT1A (ENSNFUG00015018102)
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
NAME_4	ANCESTRAL SPECIES	51	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Mummichog	MODERN SPECIES	529	ehf (ENSFHEG00000009788)	pdhx (ENSFHEG00000009802)	ENSFHEG00000009811	slc1a2b (ENSFHEG00000009858)	PAMR1 (ENSFHEG00000009886)	FJX1 (ENSFHEG00000009907)	trim44 (ENSFHEG00000009931)	LDLRAD3 (ENSFHEG00000009941)	ascl1b (ENSFHEG00000009951)	irf7 (ENSFHEG00000009999)	ENSFHEG00000010014	RASSF7 (ENSFHEG00000010036)	LRRC56 (ENSFHEG00000010046)	hrasb (ENSFHEG00000010055)	zgc:123278 (ENSFHEG00000010061) #21	tsg101a (ENSFHEG00000010111) ##21	ldha (ENSFHEG00000010165) #24	BRSK2 (ENSFHEG00000010260)	ABTB2 (ENSFHEG00000010362)	B4GALNT4 (ENSFHEG00000010606)	tmem86a (ENSFHEG00000010634) #17	spty2d1 (ENSFHEG00000010640) #18	ENSFHEG00000010693	ENSFHEG00000010774	CPT1A (ENSFHEG00000010907)	ENSFHEG00000010957	mrpl23 (ENSFHEG00000010978)	igf2b (ENSFHEG00000010989)	th (ENSFHEG00000011030)	nap1l4a (ENSFHEG00000011047)	phlda2 (ENSFHEG00000011079)
Sheepshead minnow	MODERN SPECIES	236		ehf (ENSCVAG00000008492)	pdhx (ENSCVAG00000008521)	ENSCVAG00000008531	slc1a2b (ENSCVAG00000008567)	PAMR1 (ENSCVAG00000008588)	FJX1 (ENSCVAG00000008596)	trim44 (ENSCVAG00000008598)	LDLRAD3 (ENSCVAG00000008601)	ascl1b (ENSCVAG00000008611)	irf7 (ENSCVAG00000008618)	ENSCVAG00000008637	ENSCVAG00000008655	hrasb (ENSCVAG00000008670)	zgc:123278 (ENSCVAG00000008680) #21	tsg101a (ENSCVAG00000008740) ##21	ldha (ENSCVAG00000008785) #24	BRSK2 (ENSCVAG00000008879)	ABTB2 (ENSCVAG00000008943)	ENSCVAG00000008958	tmem86a (ENSCVAG00000008966) #17	spty2d1 (ENSCVAG00000008972) #18	ENSCVAG00000008979	ENSCVAG00000008988
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00940000153362.b
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
NAME_6	ANCESTRAL SPECIES	70								ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00940000153362.b
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	537						ENSPFOG00000024659	ascl1b (ENSPFOG00000020633)	irf7 (ENSPFOG00000003428)	ENSPFOG00000003171	ENSPFOG00000003134	RASSF7 (ENSPFOG00000003071)	LRRC56 (ENSPFOG00000002973)	tsg101a (ENSPFOG00000002824) ##21	hrasb (ENSPFOG00000002595)	zgc:123278 (ENSPFOG00000023171) #21	tsg101a (ENSPFOG00000002454) ##21	ldha (ENSPFOG00000002642) #24	BRSK2 (ENSPFOG00000001962)	ABTB2 (ENSPFOG00000001615)	B4GALNT4 (ENSPFOG00000001066)	tmem86a (ENSPFOG00000000874) #17	tmem86a (ENSPFOG00000023264) #17	spty2d1 (ENSPFOG00000000809) #18
Amazon molly	MODERN SPECIES	537									ENSPFOG00000024659	ascl1b (ENSPFOG00000020633)	irf7 (ENSPFOG00000003428)	ENSPFOG00000003171	ENSPFOG00000003134	RASSF7 (ENSPFOG00000003071)	LRRC56 (ENSPFOG00000002973)	tsg101a (ENSPFOG00000002824) ##21	hrasb (ENSPFOG00000002595)	zgc:123278 (ENSPFOG00000023171) #21	tsg101a (ENSPFOG00000002454) ##21	ldha (ENSPFOG00000002642) #24	BRSK2 (ENSPFOG00000001962)	ABTB2 (ENSPFOG00000001615)	B4GALNT4 (ENSPFOG00000001066)	tmem86a (ENSPFOG00000000874) #17	tmem86a (ENSPFOG00000023264) #17	spty2d1 (ENSPFOG00000000809) #18
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	34	ENSPLAG00000003717	cdkn1bb (ENSPLAG00000003705)	yars2 (ENSPLAG00000003699)	pparab (ENSPLAG00000003692)	WNT7B (ENSPLAG00000003676)	fbln1 (ENSPLAG00000003659)	AKR1D1 (ENSPLAG00000003644)	ENSPLAG00000003630	MON2 (ENSPLAG00000003608)	ppm1h (ENSPLAG00000003571)	avpr1ab (ENSPLAG00000003533)	ENSPLAG00000003396	ENSPLAG00000003386	hrasb (ENSPLAG00000003379)	ENSPLAG00000003373	tsg101a (ENSPLAG00000003357) ##21	ldha (ENSPLAG00000003335) #24
Sailfin molly	MODERN SPECIES	3860															ENSPLAG00000012764	tsg101a (ENSPLAG00000012823) ##21	ldha (ENSPLAG00000012847) #24
Guppy	MODERN SPECIES	458	ENSPREG00000019072	pdhx (ENSPREG00000019081)	ENSPREG00000019099	slc1a2b (ENSPREG00000019113)	PAMR1 (ENSPREG00000019160)	FJX1 (ENSPREG00000019196)	trim44 (ENSPREG00000019211)	LDLRAD3 (ENSPREG00000019228)	ENSPREG00000019249	ascl1b (ENSPREG00000019266)	irf7 (ENSPREG00000019278)	RASSF7 (ENSPREG00000019305)	LRRC56 (ENSPREG00000019325)	hrasb (ENSPREG00000019341)	zgc:123278 (ENSPREG00000019343) #21	tsg101a (ENSPREG00000019375) ##21	ldha (ENSPREG00000019471) #24	BRSK2 (ENSPREG00000019521)	ABTB2 (ENSPREG00000019630)	B4GALNT4 (ENSPREG00000019698)	tmem86a (ENSPREG00000019727) #17	spty2d1 (ENSPREG00000019769) #18	ENSPREG00000019784	ENSPREG00000019811	CPT1A (ENSPREG00000019861)	ENSPREG00000019917	mrpl23 (ENSPREG00000019951)	igf2 (ENSPREG00000019975)	th (ENSPREG00000020052)	nap1l4a (ENSPREG00000020100)	phlda2 (ENSPREG00000020116)
Platyfish	MODERN SPECIES	11	ENSXMAG00000000808	pdhx (ENSXMAG00000000802)	ENSXMAG00000024184	slc1a2b (ENSXMAG00000000796)	PAMR1 (ENSXMAG00000000785)	FJX1 (ENSXMAG00000020250)	trim44 (ENSXMAG00000028604)	LDLRAD3 (ENSXMAG00000000769)	ascl1b (ENSXMAG00000019890)	irf7 (ENSXMAG00000015063)	ENSXMAG00000027218	RASSF7 (ENSXMAG00000015112)	LRRC56 (ENSXMAG00000015130)	hrasb (ENSXMAG00000015132)	ENSXMAG00000027469	tsg101a (ENSXMAG00000015140) ##21	ldha (ENSXMAG00000022304) #24	BRSK2 (ENSXMAG00000015186)	ABTB2 (ENSXMAG00000015256)	B4GALNT4 (ENSXMAG00000028406)	tmem86a (ENSXMAG00000015336) #17	spty2d1 (ENSXMAG00000015340) #18	ENSXMAG00000024578	ENSXMAG00000026683	CPT1A (ENSXMAG00000015395)	ENSXMAG00000015493	mrpl23 (ENSXMAG00000015496)	igf2b (ENSXMAG00000026239)	th (ENSXMAG00000025487)	nap1l4b (ENSXMAG00000022270)	phlda2 (ENSXMAG00000019767)
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Carangaria	ANCESTRAL SPECIES	6	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.c.a	ENSGT00940000165530.b	ENSGT00940000157661.e.a.d	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.d	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000158187	ENSGT00940000160423.a	ENSGT00940000166645	ENSGT01050000244951.a.b.a.b.a	ENSGT00530000063825.A.c.f	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.d	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Yellowtail amberjack	MODERN SPECIES	2945										ENSSLDG00000012758	irf7 (ENSSLDG00000012716)	ENSSLDG00000012684	ENSSLDG00000012647	hrasb (ENSSLDG00000012627)	zgc:123278 (ENSSLDG00000012607) #21	tsg101a (ENSSLDG00000012574) ##21	ldha (ENSSLDG00000012539) #24	BRSK2 (ENSSLDG00000012469)	ABTB2 (ENSSLDG00000012374)	B4GALNT4 (ENSSLDG00000012313)	IGSF22 (ENSSLDG00000012276)	tmem86a (ENSSLDG00000012263) #17	spty2d1 (ENSSLDG00000012243) #18	uevld (ENSSLDG00000012216) #21	ENSSLDG00000012166	CPT1A (ENSSLDG00000012099)	ENSSLDG00000012078	mrpl23 (ENSSLDG00000012055)	igf2b (ENSSLDG00000012038)	th (ENSSLDG00000011976)	nap1l4a (ENSSLDG00000011919)
Greater amberjack	MODERN SPECIES	82	ENSSDUG00000018408	arntl2 (ENSSDUG00000018436)	si:ch211-245j22.3 (ENSSDUG00000018529)	ppfibp1b (ENSSDUG00000018561)	endouc (ENSSDUG00000018681)	POLR3B (ENSSDUG00000018703)	rfx4 (ENSSDUG00000018807)	ric8b (ENSSDUG00000018890)	ENSSDUG00000018913	irf7 (ENSSDUG00000018933)	ENSSDUG00000018957	RASSF7 (ENSSDUG00000018980)	LRRC56 (ENSSDUG00000019013)	hrasb (ENSSDUG00000019086)	ENSSDUG00000019097	tsg101a (ENSSDUG00000019121) ##21	ldha (ENSSDUG00000019165) #24	BRSK2 (ENSSDUG00000019194)	ABTB2 (ENSSDUG00000019236)	B4GALNT4 (ENSSDUG00000019305)	tmem86a (ENSSDUG00000019334) #17	spty2d1 (ENSSDUG00000019340) #18	uevld (ENSSDUG00000019358) #21	ENSSDUG00000019412	CPT1A (ENSSDUG00000019472)	ENSSDUG00000019606	mrpl23 (ENSSDUG00000019634)	igf2b (ENSSDUG00000019646)	th (ENSSDUG00000019656)	nap1l4a (ENSSDUG00000019681)	phlda2 (ENSSDUG00000019713)
Barramundi perch	MODERN SPECIES	97	ehf (ENSLCAG00010017341)	pdhx (ENSLCAG00010017342)	ENSLCAG00010017345	slc1a2b (ENSLCAG00010017352)	PAMR1 (ENSLCAG00010017356)	FJX1 (ENSLCAG00010017360)	trim44 (ENSLCAG00010017362)	LDLRAD3 (ENSLCAG00010017364)	ascl1b (ENSLCAG00010017367)	irf7 (ENSLCAG00010017370)	ENSLCAG00010017378	RASSF7 (ENSLCAG00010017383)	LRRC56 (ENSLCAG00010017389)	hrasb (ENSLCAG00010017396)	zgc:123278 (ENSLCAG00010017412) #21	tsg101a (ENSLCAG00010017417) ##21	ldha (ENSLCAG00010017426) #24	BRSK2 (ENSLCAG00010017488)	ENSLCAG00010017510	ENSLCAG00010017513	ENSLCAG00010017518	B4GALNT4 (ENSLCAG00010017531)	IGSF22 (ENSLCAG00010017577)	tmem86a (ENSLCAG00010017592) #17	spty2d1 (ENSLCAG00010017601) #18	ENSLCAG00010017608	ENSLCAG00010017613	CPT1A (ENSLCAG00010017655)	ENSLCAG00010017998	mrpl23 (ENSLCAG00010018003)	igf2b (ENSLCAG00010018025)
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.c.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Turbot	MODERN SPECIES	1	pdhx (ENSSMAG00000008380)	ENSSMAG00000008404	slc1a2b (ENSSMAG00000008421)	PAMR1 (ENSSMAG00000008471)	FJX1 (ENSSMAG00000008490)	trim44 (ENSSMAG00000008503)	LDLRAD3 (ENSSMAG00000008526)	ENSSMAG00000008555	irf7 (ENSSMAG00000008566)	ENSSMAG00000008622	RASSF7 (ENSSMAG00000008690)	ENSSMAG00000008721	ENSSMAG00000030374	HRAS (ENSSMAG00000025800)	zgc:123278 (ENSSMAG00000037018) #21	tsg101a (ENSSMAG00000008768) ##21	ldha (ENSSMAG00000008810) #24	ENSSMAG00000008855	ENSSMAG00000008949	ENSSMAG00000009030	IGSF22 (ENSSMAG00000009087)	tmem86a (ENSSMAG00000009109) #17	spty2d1 (ENSSMAG00000009117) #18	ENSSMAG00000009125	ENSSMAG00000009142	ENSSMAG00000009170	ENSSMAG00000009240	mrpl23 (ENSSMAG00000009264)	igf2b (ENSSMAG00000023920)	th (ENSSMAG00000009330)	nap1l4a (ENSSMAG00000009379)
Tongue sole	MODERN SPECIES	16	ENSCSEG00000007228	prl2 (ENSCSEG00000007262)	szl (ENSCSEG00000007381)	ENSCSEG00000007386	NELL2 (ENSCSEG00000007407)	TMEM117 (ENSCSEG00000007537)	twf1a (ENSCSEG00000007561)	irak4 (ENSCSEG00000007582)	ADAMTS20 (ENSCSEG00000007625)	ENSCSEG00000007726	irf7 (ENSCSEG00000007816)	RASSF7 (ENSCSEG00000007878)	LRRC56 (ENSCSEG00000007914)	hrasb (ENSCSEG00000007927)	zgc:123278 (ENSCSEG00000007936) #21	tsg101a (ENSCSEG00000007946) ##21	ldha (ENSCSEG00000007969) #24	BRSK2 (ENSCSEG00000007990)	ENSCSEG00000008053	ABTB2 (ENSCSEG00000008058)	B4GALNT4 (ENSCSEG00000008093)	IGSF22 (ENSCSEG00000008147)	tmem86a (ENSCSEG00000008196) #17	spty2d1 (ENSCSEG00000008208) #18	uevld (ENSCSEG00000008221) #21	ENSCSEG00000008239	CPT1A (ENSCSEG00000008255)	ENSCSEG00000008380	mrpl23 (ENSCSEG00000008738)	igf2 (ENSCSEG00000008746)	th (ENSCSEG00000008767)
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Zig-zag eel	MODERN SPECIES	20	pdhx (ENSMAMG00000004692)	ENSMAMG00000004676	slc1a2b (ENSMAMG00000004641)	PAMR1 (ENSMAMG00000004620)	FJX1 (ENSMAMG00000004613)	trim44 (ENSMAMG00000004596)	ENSMAMG00000025157	LDLRAD3 (ENSMAMG00000004568)	ENSMAMG00000004542	irf7 (ENSMAMG00000004526)	ENSMAMG00000004473	RASSF7 (ENSMAMG00000004435)	ENSMAMG00000004387	HRAS (ENSMAMG00000025981)	zgc:123278 (ENSMAMG00000027176) #21	tsg101a (ENSMAMG00000004295) ##21	ldha (ENSMAMG00000004268) #24	ENSMAMG00000004222	ENSMAMG00000004112	ENSMAMG00000004036	tmem86a (ENSMAMG00000004015) #17	spty2d1 (ENSMAMG00000003996) #18	uevld (ENSMAMG00000003864) #21	ENSMAMG00000003781	ENSMAMG00000003668	ENSMAMG00000003639	mrpl23 (ENSMAMG00000003609)	igf2b (ENSMAMG00000025980)	th (ENSMAMG00000003562)	nap1l4a (ENSMAMG00000003526)	ENSMAMG00000003512
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000159310	ENSGT00940000156046	ENSGT01000000214788	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Climbing perch	MODERN SPECIES	19	ehf (ENSATEG00000020270)	pdhx (ENSATEG00000020262)	ENSATEG00000026505	slc1a2b (ENSATEG00000020213)	PAMR1 (ENSATEG00000020179)	FJX1 (ENSATEG00000020164)	trim44 (ENSATEG00000027739)	LDLRAD3 (ENSATEG00000020146)	ENSATEG00000020134	irf7 (ENSATEG00000020093)	ENSATEG00000020053	RASSF7 (ENSATEG00000020029)	LRRC56 (ENSATEG00000020014)	HRAS (ENSATEG00000027858)	ENSATEG00000019981	tsg101a (ENSATEG00000019953) ##21	ldha (ENSATEG00000019929) #24	ENSATEG00000019882	ENSATEG00000019804	ENSATEG00000019658	tmem86a (ENSATEG00000027114) #17	spty2d1 (ENSATEG00000019561) #18	uevld (ENSATEG00000019496) #21	ENSATEG00000019460	ENSATEG00000019367	ENSATEG00000019339	mrpl23 (ENSATEG00000019314)	igf2b (ENSATEG00000027726)	th (ENSATEG00000019262)	nap1l4a (ENSATEG00000019230)	ENSATEG00000019210
Siamese fighting fish	MODERN SPECIES	17	ENSBSLG00000002102	e2f4 (ENSBSLG00000002103)	zgc:154077 (ENSBSLG00000002104)	FGF6 (ENSBSLG00000002105)	ENSBSLG00000002106	tigara (ENSBSLG00000002107)	ccnd2a (ENSBSLG00000002108)	CDH13 (ENSBSLG00000002193)	mlycd (ENSBSLG00000002221)	ENSBSLG00000002465	hsbp1a (ENSBSLG00000002996)	ENSBSLG00000003573	kcng4a (ENSBSLG00000003611)	ENSBSLG00000003649	wfdc1 (ENSBSLG00000003680)	tsg101a (ENSBSLG00000003768) ##21	ldha (ENSBSLG00000003863) #24	BRSK2 (ENSBSLG00000003957)	ABTB2 (ENSBSLG00000004053)	B4GALNT4 (ENSBSLG00000004164)	tmem86a (ENSBSLG00000004225) #17	ENSBSLG00000004232	uevld (ENSBSLG00000004240) #21	ENSBSLG00000004281	CPT1A (ENSBSLG00000004304)	ENSBSLG00000004747	mrpl23 (ENSBSLG00000004796)	igf2b (ENSBSLG00000004911)	th (ENSBSLG00000005632)	nap1l4a (ENSBSLG00000006153)	phlda2 (ENSBSLG00000006167)
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000006544	tmem231 (ENSTNIG00000006546)	ENSTNIG00000006547	ENSTNIG00000000718	mst1 (ENSTNIG00000006549)	kbtbd4 (ENSTNIG00000006550)	ddb2 (ENSTNIG00000006551)	ENSTNIG00000006552	ENSTNIG00000006554	rapsn (ENSTNIG00000001727)	ENSTNIG00000006555	drd4a (ENSTNIG00000006556)	PSTK (ENSTNIG00000006574)	ACADSB (ENSTNIG00000006575)	ENSTNIG00000006608	tsg101a (ENSTNIG00000006609) ##21	ENSTNIG00000006613	ENSTNIG00000006614	ENSTNIG00000006615	sncga (ENSTNIG00000006616)	ENSTNIG00000006617	kcnk1b (ENSTNIG00000006618)	zfp36l1a (ENSTNIG00000002277)	ENSTNIG00000001344	ENSTNIG00000006651	ENSTNIG00000006673	RECK (ENSTNIG00000006674)	naga (ENSTNIG00000006675)	actn1 (ENSTNIG00000006676)	dcaf5 (ENSTNIG00000006677)	ENSTNIG00000006678
Tetraodon	MODERN SPECIES	4	rag2 (ENSTNIG00000012169)	ehf (ENSTNIG00000011373)	pdhx (ENSTNIG00000011374)	ENSTNIG00000001093	slc1a2b (ENSTNIG00000011375)	PAMR1 (ENSTNIG00000011376)	FJX1 (ENSTNIG00000011377)	trim44 (ENSTNIG00000011378)	ldlrad3 (ENSTNIG00000011379)	ascl1b (ENSTNIG00000011380)	irf7 (ENSTNIG00000011381)	ENSTNIG00000011382	RASSF7 (ENSTNIG00000011383)	ENSTNIG00000011384	hrasb (ENSTNIG00000011385)	tsg101a (ENSTNIG00000011386) ##21	ldha (ENSTNIG00000011387) #24	BRSK2 (ENSTNIG00000011388)	ENSTNIG00000001158	ENSTNIG00000010453	B4GALNT4 (ENSTNIG00000010454)	ENSTNIG00000010455	ENSTNIG00000010456	tmem86a (ENSTNIG00000010457) #17	spty2d1 (ENSTNIG00000010458) #18	uevld (ENSTNIG00000010459) #21	ENSTNIG00000010460	CPT1A (ENSTNIG00000010461)	ENSTNIG00000010462	mrpl23 (ENSTNIG00000010463)	igf2b (ENSTNIG00000010464)
Fugu	MODERN SPECIES	21	ehf (ENSTRUG00000002146)	pdhx (ENSTRUG00000002330)	ENSTRUG00000024875	slc1a2b (ENSTRUG00000002723)	PAMR1 (ENSTRUG00000029931)	FJX1 (ENSTRUG00000003190)	trim44 (ENSTRUG00000003246)	LDLRAD3 (ENSTRUG00000011658)	ascl1b (ENSTRUG00000011651)	irf7 (ENSTRUG00000011418)	ENSTRUG00000011347	RASSF7 (ENSTRUG00000011270)	LRRC56 (ENSTRUG00000011257)	hrasb (ENSTRUG00000024825)	zgc:123278 (ENSTRUG00000027355) #21	tsg101a (ENSTRUG00000010968) ##21	ldha (ENSTRUG00000010800) #24	BRSK2 (ENSTRUG00000010512)	ABTB2 (ENSTRUG00000010317)	B4GALNT4 (ENSTRUG00000010186)	tmem86a (ENSTRUG00000010152) #17	spty2d1 (ENSTRUG00000010064) #18	ENSTRUG00000009935	ENSTRUG00000009911	CPT1A (ENSTRUG00000009681)	mrpl23 (ENSTRUG00000009637)	IGF2 (ENSTRUG00000030443)	th (ENSTRUG00000009267)	ENSTRUG00000008856	phlda2 (ENSTRUG00000008836)	OSBPL5 (ENSTRUG00000008311)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Ballan wrasse	MODERN SPECIES	6	ehf (ENSLBEG00000001410)	pdhx (ENSLBEG00000001440)	slc1a2b (ENSLBEG00000001522)	PAMR1 (ENSLBEG00000001590)	FJX1 (ENSLBEG00000001614)	trim44 (ENSLBEG00000001630)	ldlrad3 (ENSLBEG00000001663)	ENSLBEG00000001704	ascl1b (ENSLBEG00000001730)	irf7 (ENSLBEG00000001747)	ENSLBEG00000001803	RASSF7 (ENSLBEG00000001838)	LRRC56 (ENSLBEG00000001887)	hrasb (ENSLBEG00000001905)	zgc:123278 (ENSLBEG00000001928) #21	tsg101a (ENSLBEG00000001961) ##21	ldha (ENSLBEG00000002015) #24	BRSK2 (ENSLBEG00000002070)	ABTB2 (ENSLBEG00000002138)	B4GALNT4 (ENSLBEG00000002186)	tmem86a (ENSLBEG00000002214) #17	spty2d1 (ENSLBEG00000002227) #18	ENSLBEG00000002243	ENSLBEG00000002275	CPT1A (ENSLBEG00000002446)	ENSLBEG00000002536	mrpl23 (ENSLBEG00000002580)	igf2b (ENSLBEG00000002605)	th (ENSLBEG00000002647)	nap1l4a (ENSLBEG00000002740)	phlda2 (ENSLBEG00000002794)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Gilthead seabream	MODERN SPECIES	22	ehf (ENSSAUG00010023077)	pdhx (ENSSAUG00010023074)	ENSSAUG00010023073	slc1a2b (ENSSAUG00010022503)	PAMR1 (ENSSAUG00010022499)	FJX1 (ENSSAUG00010022498)	trim44 (ENSSAUG00010022496)	LDLRAD3 (ENSSAUG00010022495)	ascl1b (ENSSAUG00010022494)	irf7 (ENSSAUG00010022492)	ENSSAUG00010022489	RASSF7 (ENSSAUG00010022488)	LRRC56 (ENSSAUG00010022487)	hrasb (ENSSAUG00010022485)	zgc:123278 (ENSSAUG00010022484) #21	tsg101a (ENSSAUG00010022458) ##21	ldha (ENSSAUG00010022447) #24	BRSK2 (ENSSAUG00010022402)	ABTB2 (ENSSAUG00010022380)	B4GALNT4 (ENSSAUG00010022368)	IGSF22 (ENSSAUG00010022360)	tmem86a (ENSSAUG00010022356) #17	spty2d1 (ENSSAUG00010022355) #18	ENSSAUG00010022307	ENSSAUG00010022294	CPT1A (ENSSAUG00010021025)	ENSSAUG00010021003	mrpl23 (ENSSAUG00010021001)	igf2b (ENSSAUG00010020999)	th (ENSSAUG00010020896)	nap1l4a (ENSSAUG00010020888)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
European seabass	MODERN SPECIES	19	PDHX (ENSDLAG00005009245)	ENSDLAG00005009235	slc1a2b (ENSDLAG00005008895)	FJX1 (ENSDLAG00005008875)	PAMR1 (ENSDLAG00005008851)	trim44 (ENSDLAG00005008841)	LDLRAD3 (ENSDLAG00005032103)	ENSDLAG00005026884	irf7 (ENSDLAG00005008784)	ENSDLAG00005008751	RASSF7 (ENSDLAG00005008743)	LRRC56 (ENSDLAG00005008735)	HRAS (ENSDLAG00005027285)	zgc:123278 (ENSDLAG00005027579) #21	ldha (ENSDLAG00005008541) #24	tsg101a (ENSDLAG00005026667) ##21	ENSDLAG00005008477	ENSDLAG00005008300	ENSDLAG00005008104	IGSF22 (ENSDLAG00005031376)	tmem86a (ENSDLAG00005030964) #17	spty2d1 (ENSDLAG00005008073) #18	uevld (ENSDLAG00005008034) #21	ENSDLAG00005028220	ENSDLAG00005006785	ENSDLAG00005006747	mrpl23 (ENSDLAG00005031328)	igf2b (ENSDLAG00005035050)	th (ENSDLAG00005005156)	nap1l4a (ENSDLAG00005005001)	ENSDLAG00005034234
Large yellow croaker	MODERN SPECIES	492	lrrc4ca (ENSLCRG00005018301)	ehf (ENSLCRG00005018298)	pdhx (ENSLCRG00005018275)	ENSLCRG00005018273	slc1a2b (ENSLCRG00005018256)	FJX1 (ENSLCRG00005018254)	PAMR1 (ENSLCRG00005018252)	trim44 (ENSLCRG00005018250)	ascl1b (ENSLCRG00005018247)	irf7 (ENSLCRG00005018240)	ENSLCRG00005018239	RASSF7 (ENSLCRG00005018238)	LRRC56 (ENSLCRG00005018237)	hrasb (ENSLCRG00005018236)	zgc:123278 (ENSLCRG00005018235) #21	tsg101a (ENSLCRG00005018190) ##21	ldha (ENSLCRG00005018166) #24	BRSK2 (ENSLCRG00005018116)	ABTB2 (ENSLCRG00005017730)	B4GALNT4 (ENSLCRG00005017498)	IGSF22 (ENSLCRG00005017490)	tmem86a (ENSLCRG00005017488) #17	spty2d1 (ENSLCRG00005017484) #18	uevld (ENSLCRG00005017478) #21	ENSLCRG00005017473	CPT1A (ENSLCRG00005017126)	ENSLCRG00005017120	mrpl23 (ENSLCRG00005017111)	igf2b (ENSLCRG00005017105)	th (ENSLCRG00005017076)	nap1l4a (ENSLCRG00005017075)
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Pike perch	MODERN SPECIES	6	ehf (ENSSLUG00000023827)	pdhx (ENSSLUG00000023835)	ENSSLUG00000023841	slc1a2b (ENSSLUG00000023885)	PAMR1 (ENSSLUG00000024031)	FJX1 (ENSSLUG00000024047)	trim44 (ENSSLUG00000024051)	LDLRAD3 (ENSSLUG00000024062)	ascl1b (ENSSLUG00000024066)	irf7 (ENSSLUG00000024072)	ENSSLUG00000024083	RASSF7 (ENSSLUG00000024088)	ENSSLUG00000024099	hrasb (ENSSLUG00000024105)	ENSSLUG00000024112	tsg101a (ENSSLUG00000024123) ##21	ENSSLUG00000024135	ldha (ENSSLUG00000024139) #24	BRSK2 (ENSSLUG00000024148)	ABTB2 (ENSSLUG00000000096)	tmem86a (ENSSLUG00000000106) #17	spty2d1 (ENSSLUG00000000115) #18	uevld (ENSSLUG00000000121) #21	ENSSLUG00000000127	CPT1A (ENSSLUG00000000252)	ENSSLUG00000000475	mrpl23 (ENSSLUG00000000483)	ENSSLUG00000000486	igf2b (ENSSLUG00000000490)	th (ENSSLUG00000000502)	nap1l4a (ENSSLUG00000000520)
Channel bull blenny	MODERN SPECIES	20	pdhx (ENSCGOG00000019125)	ENSCGOG00000019119	slc1a2b (ENSCGOG00000019088)	PAMR1 (ENSCGOG00000019053)	FJX1 (ENSCGOG00000019051)	trim44 (ENSCGOG00000019048)	LDLRAD3 (ENSCGOG00000019041)	ascl1b (ENSCGOG00000019039)	irf7 (ENSCGOG00000018982)	ENSCGOG00000018980	ENSCGOG00000018978	RASSF7 (ENSCGOG00000018976)	LRRC56 (ENSCGOG00000018975)	hrasb (ENSCGOG00000018941)	zgc:123278 (ENSCGOG00000018939) #21	tsg101a (ENSCGOG00000018865) ##21	ldha (ENSCGOG00000018548) #24	BRSK2 (ENSCGOG00000017777)	ABTB2 (ENSCGOG00000017640)	B4GALNT4 (ENSCGOG00000017602)	tmem86a (ENSCGOG00000017595) #17	spty2d1 (ENSCGOG00000017592) #18	uevld (ENSCGOG00000017561) #21	ENSCGOG00000017540	CPT1A (ENSCGOG00000011521)	ENSCGOG00000011412	mrpl23 (ENSCGOG00000011406)	igf2b (ENSCGOG00000011317)	th (ENSCGOG00000011200)	nap1l4a (ENSCGOG00000011186)	phlda2 (ENSCGOG00000011184)
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b
Lumpfish	MODERN SPECIES	21	ehf (ENSCLMG00005022919)	pdhx (ENSCLMG00005022921)	slc1a2b (ENSCLMG00005022927)	PAMR1 (ENSCLMG00005022939)	FJX1 (ENSCLMG00005022941)	trim44 (ENSCLMG00005022943)	LDLRAD3 (ENSCLMG00005022946)	ascl1b (ENSCLMG00005022948)	irf7 (ENSCLMG00005022952)	ENSCLMG00005022955	ENSCLMG00005022957	RASSF7 (ENSCLMG00005022959)	ENSCLMG00005022961	hrasb (ENSCLMG00005022962)	zgc:123278 (ENSCLMG00005022963) #21	tsg101a (ENSCLMG00005022965) ##21	ldha (ENSCLMG00005022968) #24	BRSK2 (ENSCLMG00005022972)	ABTB2 (ENSCLMG00005022973)	B4GALNT4 (ENSCLMG00005022977)	tmem86a (ENSCLMG00005022982) #17	spty2d1 (ENSCLMG00005022985) #18	uevld (ENSCLMG00005022987) #21	ENSCLMG00005022989	CPT1A (ENSCLMG00005023013)	ENSCLMG00005023038	mrpl23 (ENSCLMG00005023040)	igf2b (ENSCLMG00005023042)	th (ENSCLMG00005023045)	nap1l4a (ENSCLMG00005023050)	phlda2 (ENSCLMG00005023053)
Stickleback	MODERN SPECIES	14	lrrc4ca (ENSGACG00000011459)	ehf (ENSGACG00000011446)	pdhx (ENSGACG00000011437)	ENSGACG00000011430	slc1a2b (ENSGACG00000011397)	PAMR1 (ENSGACG00000011389)	FJX1 (ENSGACG00000011388)	trim44 (ENSGACG00000011381)	LDLRAD3 (ENSGACG00000011379)	ascl1b (ENSGACG00000011375)	irf7 (ENSGACG00000011372)	ENSGACG00000011362	RASSF7 (ENSGACG00000011348)	ENSGACG00000011344	hrasb (ENSGACG00000011340)	tsg101a (ENSGACG00000011311) ##21	ldha (ENSGACG00000011270) #24	BRSK2 (ENSGACG00000011262)	ABTB2 (ENSGACG00000011253)	ENSGACG00000011247	ENSGACG00000011246	tmem86a (ENSGACG00000011243) #17	spty2d1 (ENSGACG00000011238) #18	ENSGACG00000011188	ENSGACG00000011179	tmem17 (ENSGACG00000011177)	ENSGACG00000011175	ENSGACG00000011173	CPT1A (ENSGACG00000011141)	ENSGACG00000011138	mrpl23 (ENSGACG00000011130)
Osteoglossiformes	ANCESTRAL SPECIES	107													ENSGT00960000187709	ENSGT00950000182839.B.b.a	ENSGT00940000155653.b.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.g #24	ENSGT00940000157462.C.c.a.b	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.c	ENSGT00940000161238.n	ENSGT00440000039564.a.b.b	ENSGT00940000160333	ENSGT00940000159916.c #16	ENSGT00950000182959.b.a.b	ENSGT00940000158477.a.b	ENSGT00940000153901.a.b.a	ENSGT00940000167812.b	ENSGT00940000160974.b.a	ENSGT00940000160208	ENSGT00390000014700.b.a.a.d
P. kingsleyae	MODERN SPECIES	12	cdkn1ca (ENSPKIG00000012930)	trpm5 (ENSPKIG00000012994)	FCSK (ENSPKIG00000013172)	ENSPKIG00000013261	ENSPKIG00000013285	ENSPKIG00000013292	HSD17B12 (ENSPKIG00000013315)	LRRC4C (ENSPKIG00000013366)	zgc:64002 (ENSPKIG00000013377)	ENSPKIG00000013392	apip (ENSPKIG00000013406)	slc1a2a (ENSPKIG00000013432)	ascl1b (ENSPKIG00000013472)	rassf7b (ENSPKIG00000013492)	hrasb (ENSPKIG00000013507)	ENSPKIG00000013539 ##21	ldha (ENSPKIG00000013627) #24	ENSPKIG00000013662	BRSK2 (ENSPKIG00000013692)	ABTB2 (ENSPKIG00000013765)	B4GALNT4 (ENSPKIG00000013857)	ENSPKIG00000013906	ENSPKIG00000013936	NAP1L4 (ENSPKIG00000013990)	phlda2 (ENSPKIG00000014074)	slc22a18 (ENSPKIG00000014108)	OSBPL5 (ENSPKIG00000014169)	ENSPKIG00000014210	ENSPKIG00000014235	PTPN5 (ENSPKIG00000014280) #16	DUSP8 (ENSPKIG00000014327)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	20	lrrc4ca (ENSSFOG00015003324)	ehf (ENSSFOG00015003297)	pdhx (ENSSFOG00015003249)	ENSSFOG00015030127	SLC1A2 (ENSSFOG00015003213)	PAMR1 (ENSSFOG00015003188)	FJX1 (ENSSFOG00015026938)	trim44 (ENSSFOG00015027942)	ENSSFOG00015003152	ascl1b (ENSSFOG00015027533)	irf7 (ENSSFOG00015003141)	ENSSFOG00015003125	RASSF7 (ENSSFOG00015003103)	LRRC56 (ENSSFOG00015003086)	hrasb (ENSSFOG00015003051)	tsg101a (ENSSFOG00015003010) ##21	LDHA (ENSSFOG00015002979) #24	BRSK2 (ENSSFOG00015002907)	ABTB2 (ENSSFOG00015002829)	B4GALNT4 (ENSSFOG00015002771)	IGSF22 (ENSSFOG00015002677)	tmem86a (ENSSFOG00015002671) #17	spty2d1 (ENSSFOG00015002655) #18	ENSSFOG00015002603	ENSSFOG00015002584	th (ENSSFOG00015002530)	mrpl23 (ENSSFOG00015024842)	ENSSFOG00015031340	ENSSFOG00015002434	CPT1A (ENSSFOG00015002348)	cars1 (ENSSFOG00015002202)
Asian bonytongue	MODERN SPECIES	2	FCSK (ENSSFOG00015010882)	ENSSFOG00015010953	ENSSFOG00015010926	hsd17b12b (ENSSFOG00015010984)	LRRC4C (ENSSFOG00015011001)	apip (ENSSFOG00015033345)	ENSSFOG00015028482	slc1a2a (ENSSFOG00015011028)	ENSSFOG00015028363	FJX1 (ENSSFOG00015032074)	ldlrad3 (ENSSFOG00015026744)	ENSSFOG00015025499	ENSSFOG00015026690	rassf7b (ENSSFOG00015027069)	ENSSFOG00015011157	tsg101a (ENSSFOG00015011182) ##21	ldha (ENSSFOG00015011210) #24	BRSK2 (ENSSFOG00015011235)	ABTB2 (ENSSFOG00015011282)	B4GALNT4 (ENSSFOG00015011329)	ENSSFOG00015011350	igf2b (ENSSFOG00015029596)	NAP1L4 (ENSSFOG00015011392)	phlda2 (ENSSFOG00015011437)	slc22a18 (ENSSFOG00015011420)	OSBPL5 (ENSSFOG00015011457)	ENSSFOG00015011522	PTPN5 (ENSSFOG00015011591) #16	DUSP8 (ENSSFOG00015027508)	MOB2 (ENSSFOG00015011693)	ENSSFOG00015011743
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.b #21
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.b #21
Lamprey	MODERN SPECIES	2206															ENSPMAG00000006804	ENSPMAG00000006802 #21
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.b #21
Elephant shark	MODERN SPECIES	1493	ENSCMIG00000011568	ENSCMIG00000011558	sdhaf2 (ENSCMIG00000011551)	ENSCMIG00000011545	tmem216 (ENSCMIG00000011541)	tmem138 (ENSCMIG00000011537)	armc7 (ENSCMIG00000011533)	cyb561a3a (ENSCMIG00000011531)	ddb1 (ENSCMIG00000011520)	cox6a2 (ENSCMIG00000011512)	ENSCMIG00000011509	ENSCMIG00000011503	TIGD4 (ENSCMIG00000011497)	ENSCMIG00000011492 ##21	ldha (ENSCMIG00000011394) #24	uevld (ENSCMIG00000011350) #21	gtf2h1 (ENSCMIG00000011322) #25	ENSCMIG00000011312 #27	ENSCMIG00000011307 #27	ENSCMIG00000011302	ENSCMIG00000011299	ENSCMIG00000011297 #27	saal1 (ENSCMIG00000011294)	tph1a (ENSCMIG00000011275)	kcnc1b (ENSCMIG00000011259)	ENSCMIG00000011252	cd81a (ENSCMIG00000011243)	ANO9 (ENSCMIG00000011230)	TSSC4 (ENSCMIG00000011227)	slc22a18 (ENSCMIG00000011222)	nap1l4b (ENSCMIG00000011203)
Euteleostomi	ANCESTRAL SPECIES	922															ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT01000000215745
Actinopterygii	ANCESTRAL SPECIES	418										ENSGT01050000244857.A.a.b	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01000000216403	ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT01000000215745
Neopterygii	ANCESTRAL SPECIES	289									ENSGT00940000157661	ENSGT01050000244857.A.a.b	ENSGT00410000025882.b	ENSGT01030000234648.a.b.a.a.a	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238	ENSGT00950000182885.C.a	ENSGT00940000160745	ENSGT00390000007739
Spotted gar	MODERN SPECIES	666	ENSLOCG00000017320	ENSLOCG00000002207	tnnt3a (ENSLOCG00000002181)	MYOD1 (ENSLOCG00000002164)	zgc:172145 (ENSLOCG00000002153)	ENSLOCG00000002142	OTOG (ENSLOCG00000002110)	ush1c (ENSLOCG00000002073)	abcc8 (ENSLOCG00000002032)	kcnj11 (ENSLOCG00000002016)	ABTB2 (ENSLOCG00000001988)	B4GALNT4 (ENSLOCG00000001959)	IGSF22 (ENSLOCG00000001945)	tmem86a (ENSLOCG00000001930) #17	spty2d1 (ENSLOCG00000001901) #18	uevld (ENSLOCG00000001881) #21	ENSLOCG00000001862	th (ENSLOCG00000001834)	mrpl23 (ENSLOCG00000001825)	igf2b (ENSLOCG00000001806)	ENSLOCG00000001786	cpt1aa (ENSLOCG00000001740)	cars1 (ENSLOCG00000001712)	nap1l4b (ENSLOCG00000001679)	phlda2 (ENSLOCG00000017319)	slc22a18 (ENSLOCG00000001662)	OSBPL5 (ENSLOCG00000001627)	ENSLOCG00000001607	PTPN5 (ENSLOCG00000001577) #16	dusp8a (ENSLOCG00000001567)	mob2a (ENSLOCG00000001539)
Osteoglossocephalai	ANCESTRAL SPECIES	59	ENSGT00940000160931	ENSGT00940000163916	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238	ENSGT00950000182885.C.a	ENSGT00940000160745	ENSGT00390000007739
Clupeocephala	ANCESTRAL SPECIES	124	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000164715	ENSGT01060000248595.b.a.b.a.n.a
Otomorpha	ANCESTRAL SPECIES	51	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a	ENSGT00940000157661.e.b	ENSGT01050000244857.A.a.b.f	ENSGT00940000161238.l	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.f	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Clupeiformes	ANCESTRAL SPECIES	312										ENSGT00940000165300.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.n	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a
Atlantic herring	MODERN SPECIES	19	ADAMTS20 (ENSCHAG00000018032)	prickle1a (ENSCHAG00000017976)	PPHLN1 (ENSCHAG00000017947)	frmd4a (ENSCHAG00000017925)	frmd4a (ENSCHAG00000017700)	prpf18 (ENSCHAG00000017573)	ENSCHAG00000017559	ENSCHAG00000017550	ENSCHAG00000017500	ENSCHAG00000017494	ENSCHAG00000017486	irf7 (ENSCHAG00000017478)	ENSCHAG00000017460	RASSF7 (ENSCHAG00000017448)	hrasa (ENSCHAG00000017435)	zgc:123278 (ENSCHAG00000017411) #21	tsg101a (ENSCHAG00000017309) ##21	ldha (ENSCHAG00000017273) #24	BRSK2 (ENSCHAG00000017077)	ABTB2 (ENSCHAG00000016981)	B4GALNT4 (ENSCHAG00000016361)	tmem86a (ENSCHAG00000016338) #17	spty2d1 (ENSCHAG00000016320) #18	ENSCHAG00000016164	ENSCHAG00000016146	th (ENSCHAG00000015392)	ldlrad3 (ENSCHAG00000015369)	trim44 (ENSCHAG00000015361)	FJX1 (ENSCHAG00000015355)	PAMR1 (ENSCHAG00000015347)	slc1a2b (ENSCHAG00000014288)
Otophysi	ANCESTRAL SPECIES	85	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a.a ##21	ENSGT00940000157462.C.c.a.l	ENSGT00940000157661.e.b	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000160004.f	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626	ENSGT00950000183002.A
Cyprinoidei	ANCESTRAL SPECIES	93										ENSGT00940000165300.b.a.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000169159
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	17	fbxl22 (ENSDARG00000096995)	ENSDARG00000088171	DAPK2 (ENSDARG00000103666)	ACSBG1 (ENSDARG00000062077)	idh3a (ENSDARG00000030278)	lrrc61 (ENSDARG00000077357)	cib2 (ENSDARG00000102820)	ENSDARG00000109803	TBC1D2B (ENSDARG00000061986)	hic1l (ENSDARG00000045660)	irf7 (ENSDARG00000045661)	ENSDARG00000075252	RASSF7 (ENSDARG00000079917)	LRRC56 (ENSDARG00000096081)	hrasa (ENSDARG00000098497)	zgc:123278 (ENSDARG00000096110) #21	ENSDARG00000112209	ENSDARG00000103976	ENSDARG00000096060	ccl35.2 (ENSDARG00000070378)	tsg101a (ENSDARG00000040854) ##21	ldha (ENSDARG00000101251) #24	ENSDARG00000100953	ENSDARG00000102727	BRSK2 (ENSDARG00000061421)	ABTB2 (ENSDARG00000062000)	B4GALNT4 (ENSDARG00000046150)	tmem86a (ENSDARG00000044034) #17	spty2d1 (ENSDARG00000033889) #18	ENSDARG00000095586	ENSDARG00000094163
Zebrafish	MODERN SPECIES	17	ENSDARG00000112209	ENSDARG00000103976	ENSDARG00000096060	ccl35.2 (ENSDARG00000070378)	tsg101a (ENSDARG00000040854) ##21	ldha (ENSDARG00000101251) #24	ENSDARG00000100953	ENSDARG00000102727	BRSK2 (ENSDARG00000061421)	ABTB2 (ENSDARG00000062000)	B4GALNT4 (ENSDARG00000046150)	tmem86a (ENSDARG00000044034) #17	spty2d1 (ENSDARG00000033889) #18	ENSDARG00000095586	ENSDARG00000094163	uevld (ENSDARG00000009266) #21	ENSDARG00000051836	th (ENSDARG00000030621)	igf2b (ENSDARG00000033307)	mrpl23 (ENSDARG00000045696)	zgc:123060 (ENSDARG00000095051)	ENSDARG00000062059	ENSDARG00000062054	nap1l4a (ENSDARG00000070560)	phlda2 (ENSDARG00000042874)	ENSDARG00000116285	ENSDARG00000103841	OSBPL5 (ENSDARG00000076002)	ENSDARG00000086511	ENSDARG00000091539	dusp8a (ENSDARG00000009299)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	219							ENSGT00940000155653.b.c.b	ENSGT00940000153903.a.b.b.d #21	ENSGT00940000153903.a.b.a.b.b ##21	ENSGT00940000153201.a #24	ENSGT00940000157462.C.c.a.k.b	ENSGT00940000157661.e.a.b	ENSGT01050000244857.A.a.b.e.a	ENSGT00390000007101.d.b.e #17	ENSGT00940000154133.A.a #18	ENSGT00940000153903.a.b.b.c.a #21	ENSGT00940000161238.k.a	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a	ENSGT00440000039564.a.b	ENSGT00940000159535.h	ENSGT00940000156870.bb.b.a	ENSGT00940000160004.f.a	ENSGT01050000244956.a.a.n.b	ENSGT00990000203615.a.a.a.b.f	ENSGT00940000156626.w.b	ENSGT00950000183002.A.c
Goldfish	MODERN SPECIES	45	ENSCARG00000054268	ENSCARG00000054225	ENSCARG00000054202	ENSCARG00000054162	LRRC56 (ENSCARG00000054150)	ENSCARG00000054133	irf7 (ENSCARG00000053976)	ENSCARG00000053955	hic1l (ENSCARG00000053948)	ENSCARG00000053942	BRSK2 (ENSCARG00000051567)	ABTB2 (ENSCARG00000051344)	B4GALNT4 (ENSCARG00000050960)	tmem86a (ENSCARG00000050925) #17	spty2d1 (ENSCARG00000050914) #18	uevld (ENSCARG00000050882) #21	ENSCARG00000050838	th (ENSCARG00000050601)	igf2b (ENSCARG00000050562)	mrpl23 (ENSCARG00000050540)	ENSCARG00000050525	ENSCARG00000049918	nap1l4a (ENSCARG00000049783)	phlda2 (ENSCARG00000049767)	OSBPL5 (ENSCARG00000048773)	ENSCARG00000048706	dusp8a (ENSCARG00000048679)	mob2a (ENSCARG00000048612)	kcnj11 (ENSCARG00000048580)	abcc8 (ENSCARG00000047502)	ush1c (ENSCARG00000047304)
Cyprininae_a	ANCESTRAL SPECIES	154	ENSGT00390000001545	ENSGT00950000182839.B.b.b.b	ENSGT00950000183205.b.a.a.b	ENSGT00940000160931.g	ENSGT00940000159978.r.b	ENSGT00940000156334.a.a.f	ENSGT00940000155653.b.c.b.a	ENSGT00940000153903.a.b.b.d #21	ENSGT00940000153903.a.b.a.b.b ##21	ENSGT00940000153201.a #24	ENSGT00940000157462.C.c.a.k.b	ENSGT00940000157661.e.a.b	ENSGT01050000244857.A.a.b.e.a	ENSGT00390000007101.d.b.e #17	ENSGT00940000154133.A.a #18	ENSGT00940000153903.a.b.b.c.a #21	ENSGT00940000161238.k.a	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a	ENSGT00440000039564.a.b	ENSGT00940000159535.h	ENSGT00940000156870.bb.b.a	ENSGT00940000160004.f.a	ENSGT01050000244956.a.a.n.b	ENSGT00990000203615.a.a.a.b.f	ENSGT00940000156626.w.b	ENSGT00950000183002.A.c
Golden-line barbel	MODERN SPECIES	482														tmem86a (ENSSGRG00000023693) #17	spty2d1 (ENSSGRG00000023692) #18	uevld (ENSSGRG00000023690) #21	ENSSGRG00000023688	th (ENSSGRG00000023680)	igf2b (ENSSGRG00000023677)	mrpl23 (ENSSGRG00000023674)	ENSSGRG00000023673	ENSSGRG00000020391	nap1l4a (ENSSGRG00000020335)	phlda2 (ENSSGRG00000020334)	OSBPL5 (ENSSGRG00000019248)	ENSSGRG00000019231	dusp8a (ENSSGRG00000019224)	mob2a (ENSSGRG00000019222)	MOB2 (ENSSGRG00000019221)	abcc8 (ENSSGRG00000019205)
Common carp reference	MODERN SPECIES	33	ENSCCRG00000046537	ENSCCRG00000055099	irf7 (ENSCCRG00000073524)	hic1l (ENSCCRG00000029699)	ENSCCRG00000050923	ENSCCRG00000058212	ENSCCRG00000031946	zgc:123278 (ENSCCRG00000031949) #21	tsg101a (ENSCCRG00000031963) ##21	ldha (ENSCCRG00000080245) #24	ENSCCRG00000028788	ENSCCRG00000065686	ENSCCRG00000028725	tmem86a (ENSCCRG00000055822) #17	spty2d1 (ENSCCRG00000032466) #18	uevld (ENSCCRG00000032457) #21	ENSCCRG00000032449	th (ENSCCRG00000028165)	igf2b (ENSCCRG00000077650)	mrpl23 (ENSCCRG00000021780)	ENSCCRG00000021778	ENSCCRG00000031991	ENSCCRG00000076888	nap1l4a (ENSCCRG00000053707)	phlda2 (ENSCCRG00000031114)	ENSCCRG00000050262	ENSCCRG00000006126	ENSCCRG00000070395	ENSCCRG00000075142	ENSCCRG00000022539	dusp8a (ENSCCRG00000056844)
Cyprininae	ANCESTRAL SPECIES	296								ENSGT00940000155653.b.c.a	ENSGT00940000153903.a.b.a.b.a ##21	ENSGT00940000153201.b #24	ENSGT00940000157462.C.c.a.k.a	ENSGT00940000157661.e.a.a	ENSGT01050000244857.A.a.b.e.b	ENSGT00390000007101.d.b.f #17	ENSGT00940000154133.A.b #18	ENSGT00940000153903.a.b.b.c.b #21	ENSGT00940000161238.k.b	ENSGT00950000182885.C.a.a	ENSGT00940000160745.d.b	ENSGT00390000007739.a.b	ENSGT00940000164715.b.a	ENSGT01060000248595.b.a.b.a.n.a.b	ENSGT00940000169159.b	ENSGT00940000159535.g	ENSGT00940000156870.cb	ENSGT00940000160004.f.b	ENSGT01050000244956.a.a.n.a	ENSGT00990000203615.a.a.a.b.e	ENSGT00940000156626.w.a	ENSGT00950000183002.A.d	ENSGT00920000149457.b
Cyprininae_a	ANCESTRAL SPECIES	16	ENSGT00390000016453.b	ENSGT00950000182839.B.b.b.a	ENSGT00950000183205.b.a.a.a	ENSGT00940000160931.h	ENSGT00940000165300.b.a.a.b.b	ENSGT00940000159978.r.a	ENSGT00940000156334.a.a.e	ENSGT00940000155653.b.c.b.b	ENSGT00940000153903.a.b.a.b.a ##21	ENSGT00940000153201.b #24	ENSGT00940000157462.C.c.a.k.a	ENSGT00940000157661.e.a.a	ENSGT01050000244857.A.a.b.e.b	ENSGT00390000007101.d.b.f #17	ENSGT00940000154133.A.b #18	ENSGT00940000153903.a.b.b.c.b #21	ENSGT00940000161238.k.b	ENSGT00950000182885.C.a.a	ENSGT00940000160745.d.b	ENSGT00390000007739.b	ENSGT00940000164715.b.a	ENSGT01060000248595.b.a.b.a.n.a.b	ENSGT00940000169159.b	ENSGT00940000159535.g	ENSGT00940000156870.cb	ENSGT00940000160004.f.b	ENSGT01050000244956.a.a.n.a	ENSGT00990000203615.a.a.a.b.e	ENSGT00940000156626.w.a	ENSGT00950000183002.A.d	ENSGT00920000149457.b
Common carp reference	MODERN SPECIES	37	ENSCCRG00000029690	ENSCCRG00000019152	irf7 (ENSCCRG00000029695)	ENSCCRG00000029694	ENSCCRG00000064628	ENSCCRG00000029700	ENSCCRG00000029702	ENSCCRG00000029705	tsg101a (ENSCCRG00000031935) ##21	ldha (ENSCCRG00000062327) #24	ENSCCRG00000053385	ENSCCRG00000028735	ENSCCRG00000013489	tmem86a (ENSCCRG00000001012) #17	spty2d1 (ENSCCRG00000046624) #18	uevld (ENSCCRG00000046630) #21	ENSCCRG00000046641	th (ENSCCRG00000072377)	igf2b (ENSCCRG00000043613)	ENSCCRG00000069666	ENSCCRG00000082707	ENSCCRG00000021606	ENSCCRG00000031922	ENSCCRG00000031052	nap1l4a (ENSCCRG00000031099)	phlda2 (ENSCCRG00000059697)	ENSCCRG00000031128	ENSCCRG00000068830	ENSCCRG00000066001	ENSCCRG00000070357	dusp8a (ENSCCRG00000066543)
Cyprininae	ANCESTRAL SPECIES	219															ENSGT00940000155653.b.c.b	ENSGT00940000153903.a.b.b.d #21	ENSGT00940000153903.a.b.a.b.b ##21	ENSGT00940000153201.a #24	ENSGT00940000157462.C.c.a.k.b	ENSGT00940000157661.e.a.b	ENSGT01050000244857.A.a.b.e.a	ENSGT00390000007101.d.b.e #17	ENSGT00940000154133.A.a #18	ENSGT00940000153903.a.b.b.c.a #21	ENSGT00940000161238.k.a	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a
Goldfish	MODERN SPECIES	45	ENSCARG00000056448	ENSCARG00000056435	ENSCARG00000056420	ENSCARG00000056396	ENSCARG00000056374	ENSCARG00000056332	ENSCARG00000056315	ENSCARG00000056301	ENSCARG00000056288	ENSCARG00000056271	ENSCARG00000056262	ENSCARG00000056246	ENSCARG00000056220	ENSCARG00000056208	hrasa (ENSCARG00000049756)	zgc:123278 (ENSCARG00000049744) #21	tsg101a (ENSCARG00000049670) ##21	ldha (ENSCARG00000049640) #24	ENSCARG00000049615	PCLAF (ENSCARG00000049593)	zgc:114188 (ENSCARG00000049498)	ENSCARG00000049482	ENSCARG00000049473	SRPK2 (ENSCARG00000047079)	ENSCARG00000047038	pus7 (ENSCARG00000046613)	DIAPH1 (ENSCARG00000046119)	pcdh2g13 (ENSCARG00000045955)	ENSCARG00000045928	ENSCARG00000045911	ENSCARG00000045886
Cyprininae_a	ANCESTRAL SPECIES	154								ENSGT00390000016453.a	ENSGT00390000001545	ENSGT00950000182839.B.b.b.b	ENSGT00950000183205.b.a.a.b	ENSGT00940000160931.g	ENSGT00940000159978.r.b	ENSGT00940000156334.a.a.f	ENSGT00940000155653.b.c.b.a	ENSGT00940000153903.a.b.b.d #21	ENSGT00940000153903.a.b.a.b.b ##21	ENSGT00940000153201.a #24	ENSGT00940000157462.C.c.a.k.b	ENSGT00940000157661.e.a.b	ENSGT01050000244857.A.a.b.e.a	ENSGT00390000007101.d.b.e #17	ENSGT00940000154133.A.a #18	ENSGT00940000153903.a.b.b.c.a #21	ENSGT00940000161238.k.a	ENSGT00950000182885.C.a.b	ENSGT00940000160745.d.a	ENSGT00390000007739.a.a	ENSGT00940000164715.b.b	ENSGT01060000248595.b.a.b.a.n.a.a	ENSGT00940000169159.a
Golden-line barbel	MODERN SPECIES	218	hypk (ENSSGRG00000051212)	mfap1 (ENSSGRG00000051211)	hddc3 (ENSSGRG00000051209)	vps33b (ENSSGRG00000051142)	ttc17 (ENSSGRG00000051128)	hsd17b12b (ENSSGRG00000051108)	ENSSGRG00000051107	apip (ENSSGRG00000051102)	ENSSGRG00000051101	PAMR1 (ENSSGRG00000051098)	FJX1 (ENSSGRG00000051096)	ascl1b (ENSSGRG00000051095)	rassf7b (ENSSGRG00000051093)	hrasb (ENSSGRG00000051092)	hrasb (ENSSGRG00000051072)	ENSSGRG00000051070 #21	BRSK2 (ENSSGRG00000051040)	ENSSGRG00000051034	B4GALNT4 (ENSSGRG00000051032)	ENSSGRG00000051030	cpt1aa (ENSSGRG00000050817)	ENSSGRG00000050802	traf6 (ENSSGRG00000050792)	traf6 (ENSSGRG00000050779)	ENSSGRG00000050774	ENSSGRG00000050773	kcnq1.1 (ENSSGRG00000050771)	lingo1b (ENSSGRG00000050770)	ENSSGRG00000050348	crabp1b (ENSSGRG00000050336)	slc25a44b (ENSSGRG00000050333)
Common carp reference	MODERN SPECIES	33	adat1 (ENSCCRG00000037180)	wwp2 (ENSCCRG00000037246)	frs2b (ENSCCRG00000064747)	nup160 (ENSCCRG00000066074)	ENSCCRG00000064714	ENSCCRG00000077141	ENSCCRG00000046548	ENSCCRG00000046541	ENSCCRG00000046537	ENSCCRG00000055099	irf7 (ENSCCRG00000073524)	hic1l (ENSCCRG00000029699)	ENSCCRG00000050923	ENSCCRG00000058212	ENSCCRG00000031946	zgc:123278 (ENSCCRG00000031949) #21	tsg101a (ENSCCRG00000031963) ##21	ldha (ENSCCRG00000080245) #24	ENSCCRG00000028788	ENSCCRG00000065686	ENSCCRG00000028725	tmem86a (ENSCCRG00000055822) #17	spty2d1 (ENSCCRG00000032466) #18	uevld (ENSCCRG00000032457) #21	ENSCCRG00000032449	th (ENSCCRG00000028165)	igf2b (ENSCCRG00000077650)	mrpl23 (ENSCCRG00000021780)	ENSCCRG00000021778	ENSCCRG00000031991	ENSCCRG00000076888
Characiphysae	ANCESTRAL SPECIES	57	ENSGT00390000013344	ENSGT00940000172107	ENSGT00940000159937	ENSGT00940000177365	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00390000011705	ENSGT00940000165300.b.a.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	19	vps33b (ENSIPUG00000022696)	PRC1 (ENSIPUG00000022676)	ttc17 (ENSIPUG00000022641)	hsd17b12b (ENSIPUG00000022611)	ENSIPUG00000022606	Lrrc4c (ENSIPUG00000022604)	ENSIPUG00000022600	apip (ENSIPUG00000022579)	slc1a2a (ENSIPUG00000022560)	PAMR1 (ENSIPUG00000022552)	ascl1b (ENSIPUG00000022550)	ENSIPUG00000022538	Rassf7 (ENSIPUG00000022527)	hrasb (ENSIPUG00000022502)	ENSIPUG00000022492	ENSIPUG00000022485 #21	tsg101b (ENSIPUG00000022428) ##21	BRSK2 (ENSIPUG00000022405)	ABTB2 (ENSIPUG00000022359)	B4GALNT4 (ENSIPUG00000022345)	ENSIPUG00000022314	igf2a (ENSIPUG00000022309)	CPT1A (ENSIPUG00000022263)	Edil3 (ENSIPUG00000022233)	HAPLN3 (ENSIPUG00000022227)	ACAN (ENSIPUG00000022176)	traf6 (ENSIPUG00000022164)	ENSIPUG00000022153	trpm5 (ENSIPUG00000022100)	cdkn1ca (ENSIPUG00000022095)	kcnq1.1 (ENSIPUG00000021227)
Channel catfish	MODERN SPECIES	5	thg1l (ENSIPUG00000006310)	ENSIPUG00000006285	irf7 (ENSIPUG00000006270)	phrf1 (ENSIPUG00000006177)	rassf7 (ENSIPUG00000006154)	lrrc56 (ENSIPUG00000006132)	hrasa (ENSIPUG00000006053)	tsg101 (ENSIPUG00000005937) ##21	ldha (ENSIPUG00000005875) #24	BRSK2 (ENSIPUG00000005805)	abtb2 (ENSIPUG00000005727)	B4GALNT4 (ENSIPUG00000005683)	IGSF22 (ENSIPUG00000005662)	tmem86a (ENSIPUG00000005654) #17	spty2d1 (ENSIPUG00000005617) #18	uevld (ENSIPUG00000005569) #21	ENSIPUG00000005499	th (ENSIPUG00000005463)	igf2b (ENSIPUG00000005412)	mrpl23 (ENSIPUG00000005383)	ENSIPUG00000005353	ENSIPUG00000005334	cpt1a (ENSIPUG00000005228)	nap1l4a (ENSIPUG00000005201)	phlda2 (ENSIPUG00000005186)	OSBPL5 (ENSIPUG00000005152)	ENSIPUG00000005122	ENSIPUG00000005070	dusp8a (ENSIPUG00000005041)	mob2a (ENSIPUG00000005022)	kcnj11 (ENSIPUG00000005009)
Characiphysae_b	ANCESTRAL SPECIES	32	ENSGT00940000172107	ENSGT00940000159937	ENSGT00940000177365	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00390000011705	ENSGT00940000165300.b.a.b	ENSGT00940000165300.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b	ENSGT01060000248595.b.a.b.a.n.a
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	259	ELP1 (ENSEEEG00000022903)	ENSEEEG00000023090	ENSEEEG00000023091	ENSEEEG00000023093	SLC44A1 (ENSEEEG00000023094)	ABCA1 (ENSEEEG00000023098)	nipsnap3a (ENSEEEG00000023099)	ENSEEEG00000023100	thg1l (ENSEEEG00000023101)	ENSEEEG00000023102	irf7 (ENSEEEG00000023103)	ENSEEEG00000023105	RASSF7 (ENSEEEG00000023106)	LRRC56 (ENSEEEG00000023108)	hrasa (ENSEEEG00000023109)	zgc:123278 (ENSEEEG00000023111) #21	tsg101a (ENSEEEG00000023112) ##21	ldha (ENSEEEG00000023113) #24	BRSK2 (ENSEEEG00000023115)	ABTB2 (ENSEEEG00000023116)	B4GALNT4 (ENSEEEG00000023117)	IGSF22 (ENSEEEG00000023123)	tmem86a (ENSEEEG00000023128) #17	spty2d1 (ENSEEEG00000023130) #18	uevld (ENSEEEG00000023131) #21
Electric eel	MODERN SPECIES	259	ENSEEEG00000023102	irf7 (ENSEEEG00000023103)	ENSEEEG00000023105	RASSF7 (ENSEEEG00000023106)	LRRC56 (ENSEEEG00000023108)	hrasa (ENSEEEG00000023109)	zgc:123278 (ENSEEEG00000023111) #21	tsg101a (ENSEEEG00000023112) ##21	ldha (ENSEEEG00000023113) #24	BRSK2 (ENSEEEG00000023115)	ABTB2 (ENSEEEG00000023116)	B4GALNT4 (ENSEEEG00000023117)	IGSF22 (ENSEEEG00000023123)	tmem86a (ENSEEEG00000023128) #17	spty2d1 (ENSEEEG00000023130) #18	uevld (ENSEEEG00000023131) #21
Characoidei	ANCESTRAL SPECIES	68	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.m	ENSGT00390000013344	ENSGT00940000159937	ENSGT00940000157174.d	ENSGT00940000154658.b.i.a	ENSGT00950000183018.b	ENSGT01030000234799	ENSGT00390000011705	ENSGT00940000165300.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a.b ##21	ENSGT00940000153201 #24	ENSGT00940000161254	ENSGT00940000157462.C.c.a.k	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.e	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT00950000182885.C.a	ENSGT00940000160745.d	ENSGT00390000007739	ENSGT00940000164715.b
Mexicana tetra	MODERN SPECIES	23	ELP1 (ENSAMXG00000016402)	TBC1D2 (ENSAMXG00000016417)	SLC44A1 (ENSAMXG00000016423)	ABCA1 (ENSAMXG00000016432)	nipsnap3a (ENSAMXG00000016441)	ENSAMXG00000029341	thg1l (ENSAMXG00000042416)	ascl1b (ENSAMXG00000024858)	irf7 (ENSAMXG00000016465)	ENSAMXG00000032122	ENSAMXG00000034068	ENSAMXG00000033302	RASSF7 (ENSAMXG00000032376)	LRRC56 (ENSAMXG00000016488)	hrasa (ENSAMXG00000035885)	zgc:123278 (ENSAMXG00000043654) #21	tsg101a (ENSAMXG00000016510) ##21	ldha (ENSAMXG00000032467) #24	ENSAMXG00000031527	ENSAMXG00000040387	ENSAMXG00000036441	ABTB2 (ENSAMXG00000016567)	B4GALNT4 (ENSAMXG00000030630)	ENSAMXG00000041914	IGSF22 (ENSAMXG00000016613)	tmem86a (ENSAMXG00000016631) #17	spty2d1 (ENSAMXG00000016641) #18	ENSAMXG00000016647	ENSAMXG00000016679	th (ENSAMXG00000016719)	igf2b (ENSAMXG00000031616)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	474		smu1a (ENSPNAG00000002740)	ELP1 (ENSPNAG00000013695)	TBC1D2 (ENSPNAG00000013753)	SLC44A1 (ENSPNAG00000002941)	ABCA1 (ENSPNAG00000013884)	nipsnap3a (ENSPNAG00000013916)	ENSPNAG00000013928	thg1l (ENSPNAG00000013944)	ascl1b (ENSPNAG00000013961)	irf7 (ENSPNAG00000013981)	ENSPNAG00000003007	RASSF7 (ENSPNAG00000014034)	LRRC56 (ENSPNAG00000014068)	hrasa (ENSPNAG00000014085)	zgc:123278 (ENSPNAG00000003029) #21	tsg101a (ENSPNAG00000003036) ##21	ldha (ENSPNAG00000014176) #24
Red-bellied piranha	MODERN SPECIES	300										BRSK2 (ENSPNAG00000011016)	ABTB2 (ENSPNAG00000010991)	B4GALNT4 (ENSPNAG00000010887)	IGSF22 (ENSPNAG00000001454)	tmem86a (ENSPNAG00000010737) #17	spty2d1 (ENSPNAG00000010715) #18	uevld (ENSPNAG00000010689) #21	ENSPNAG00000010667	th (ENSPNAG00000010605)	igf2b (ENSPNAG00000010561)	mrpl23 (ENSPNAG00000010548)	ENSPNAG00000010536	CPT1A (ENSPNAG00000010520)	nap1l4a (ENSPNAG00000010389)	phlda2 (ENSPNAG00000010357)	OSBPL5 (ENSPNAG00000010345)	ENSPNAG00000010332	ENSPNAG00000010305	ENSPNAG00000010291	ENSPNAG00000010271
Euteleosteomorpha	ANCESTRAL SPECIES	20	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Protacanthopterygii	ANCESTRAL SPECIES	178									ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159
Salmoninae	ANCESTRAL SPECIES	90	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.b	ENSGT00940000153567.a.a.b.a.b	ENSGT00940000153372.A.f	ENSGT00940000159379.a.b	ENSGT00940000154479.a.a.b.d.b	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.a.b.a #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159	ENSGT00390000002251	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00950000182885.C.a	ENSGT00530000063576.A	ENSGT00940000162677.pc.a
Salmoninae_a	ANCESTRAL SPECIES	116				ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.b	ENSGT00940000153567.a.a.b.a.b.d	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.b #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159	ENSGT00390000002251	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00950000182885.C.a	ENSGT00530000063576.A	ENSGT00940000162677.pc.a	ENSGT00950000182857.a.a.b.b
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000155057.vb.a.b	ENSGT00940000155057.wb.g	ENSGT00940000155057.vb.b	ENSGT00940000153567.a.a.b.a.b.d	ENSGT00940000153372.A.f.g	ENSGT00940000159379.b	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.a.a #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159	ENSGT00390000002251	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00950000182885.C.a	ENSGT00530000063576.A	ENSGT00940000162677.pc.a
Oncorhynchus_a	ANCESTRAL SPECIES	5						ENSGT00940000155057.wb.g	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.a.a #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159	ENSGT00390000002251	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00950000182885.C.a	ENSGT00530000063576.A	ENSGT00940000162677.pc.a	ENSGT00950000182857.a.a.b.b
Chinook salmon	MODERN SPECIES	10	ehhadh (ENSOTSG00005021117)	tmem41aa (ENSOTSG00005021112)	ENSOTSG00005021110	ENSOTSG00005021105	MAGI2 (ENSOTSG00005020989)	ENSOTSG00005020983	ENSOTSG00005020982	ENSOTSG00005020979	tsg101a (ENSOTSG00005020677) ##21	ldha (ENSOTSG00005020538) #24	BRSK2 (ENSOTSG00005020135)	ABTB2 (ENSOTSG00005020084)	B4GALNT4 (ENSOTSG00005019872)	tmem86a (ENSOTSG00005019865) #17	spty2d1 (ENSOTSG00005019863) #18	uevld (ENSOTSG00005019862) #21	ENSOTSG00005019859	CPT1A (ENSOTSG00005019296)	ENSOTSG00005019284	igf2b (ENSOTSG00005019282)	ENSOTSG00005019280	mrpl23 (ENSOTSG00005027223)	OSBPL5 (ENSOTSG00005025174)	phlda2 (ENSOTSG00005025163)	nap1l4a (ENSOTSG00005025162)	FCSK (ENSOTSG00005024944)	commd9 (ENSOTSG00005024916)	PRR5L (ENSOTSG00005024914)	th (ENSOTSG00005024912)	ptdss2 (ENSOTSG00005024757)	cdkn1ca (ENSOTSG00005024751)
Salmo	ANCESTRAL SPECIES	50	ENSGT00940000157447.c	ENSGT00510000047494	ENSGT00940000160162.g	ENSGT00940000154091.a.b	ENSGT00940000154996.a.b.a	ENSGT00940000155057.wb.g	ENSGT00940000155480.c.a	ENSGT00940000163982	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201.e.b #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00940000160745	ENSGT00390000007739	ENSGT00940000159535	ENSGT00440000039564.a.b	ENSGT00940000169159	ENSGT00390000002251	ENSGT00390000006218	ENSGT00530000063981.b	ENSGT00950000182885.C.a	ENSGT00530000063576.A	ENSGT00940000162677.pc.a	ENSGT00950000182857.a.a.b.b
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000092278	ENSSSAG00000042057	ENSSSAG00000085355	ENSSSAG00000091245	ENSSSAG00000122007	ENSSSAG00000040839	ENSSSAG00000041054	tsg101a (ENSSSAG00000093918) ##21	ldha (ENSSSAG00000041413) #24	ENSSSAG00000041623	ENSSSAG00000110204	ENSSSAG00000047838	ENSSSAG00000049007	tmem86a (ENSSSAG00000106050) #17	spty2d1 (ENSSSAG00000049082) #18	uevld (ENSSSAG00000049123) #21	ENSSSAG00000084303	ENSSSAG00000098753	ENSSSAG00000050712	ENSSSAG00000118027	igf2b (ENSSSAG00000051052)	RM23 (ENSSSAG00000121390)	ENSSSAG00000051329	phlda2 (ENSSSAG00000060970)	ENSSSAG00000098299	nap1l4a (ENSSSAG00000060978)	ENSSSAG00000061207	ENSSSAG00000064293	ENSSSAG00000082778	ENSSSAG00000064310	ENSSSAG00000104931
Acanthomorphata	ANCESTRAL SPECIES	28	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.d.b	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Cod	DUPLICATION
Cod	MODERN SPECIES	7	acsl3a (ENSGMOG00000013028)	ENSGMOG00000013019	ENSGMOG00000031387	wdfy1 (ENSGMOG00000009437)	dhrs12la (ENSGMOG00000009451)	serpine2 (ENSGMOG00000009432)	prss16 (ENSGMOG00000009428)	ENSGMOG00000036798	PSMD2 (ENSGMOG00000009403)	ENSGMOG00000009362	ENSGMOG00000036699	ENSGMOG00000009300	ENSGMOG00000036655	CLCN2 (ENSGMOG00000035217)	ENSGMOG00000031053	ENSGMOG00000035009 #21	ENSGMOG00000022616	vezf1b (ENSGMOG00000035555)	ENSGMOG00000031368	ENSGMOG00000018149	ENSGMOG00000023472	ENSGMOG00000018134	ENSGMOG00000032816	ENSGMOG00000029652	ENSGMOG00000029966	ENSGMOG00000036973	ENSGMOG00000018124	ENSGMOG00000031453	ENSGMOG00000022465	ENSGMOG00000001452	ENSGMOG00000001439
Cod	MODERN SPECIES	22	ENSGMOG00000033453	ENSGMOG00000025316	ENSGMOG00000028664	ENSGMOG00000010137	ENSGMOG00000010126	ENSGMOG00000034679	ENSGMOG00000012695	tsg101a (ENSGMOG00000012693) ##21	ldha (ENSGMOG00000012687) #24	ENSGMOG00000024167	ENSGMOG00000002447	ENSGMOG00000004364	ENSGMOG00000025391	tmem86a (ENSGMOG00000028528) #17	spty2d1 (ENSGMOG00000037148) #18	uevld (ENSGMOG00000005684) #21	ENSGMOG00000005640	ENSGMOG00000010709	ENSGMOG00000010694	unc45a (ENSGMOG00000010673)	ENSGMOG00000010656	furinb (ENSGMOG00000010637)	accs (ENSGMOG00000003409)	rag1 (ENSGMOG00000003395)	rag2 (ENSGMOG00000003392)	lrrc4ca (ENSGMOG00000003380)	ehf (ENSGMOG00000014045)	pdhx (ENSGMOG00000036174)	ENSGMOG00000007201	slc1a2b (ENSGMOG00000007194)	PAMR1 (ENSGMOG00000012777)
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	8	slc4a2a (ENSMMDG00005007921)	ENSMMDG00005008380	ttc19 (ENSMMDG00005008384)	ENSMMDG00005008389	ENSMMDG00005008397	tmub1 (ENSMMDG00005008404)	asap1a (ENSMMDG00005008419)	ENSMMDG00005008815	amph (ENSMMDG00005008829)	inhbab (ENSMMDG00005009026)	ENSMMDG00005009046	zgc:55781 (ENSMMDG00005009048)	dnajc1 (ENSMMDG00005009049)	ENSMMDG00005012359	cdh7a (ENSMMDG00005012361)	ENSMMDG00005012365 #21	ENSMMDG00005012367	impa1 (ENSMMDG00005012372)	ENSMMDG00005012393	fbxl7 (ENSMMDG00005012718)	riok1 (ENSMMDG00005012725)	rpp40 (ENSMMDG00005012758)	CDY1 (ENSMMDG00005012760)	tmx3a (ENSMMDG00005012765)
Pinecone sodierfish	MODERN SPECIES	20	ehf (ENSMMDG00005024496)	pdhx (ENSMMDG00005024499)	ENSMMDG00005024502	slc1a2b (ENSMMDG00005024512)	PAMR1 (ENSMMDG00005024536)	FJX1 (ENSMMDG00005024537)	trim44 (ENSMMDG00005024538)	LDLRAD3 (ENSMMDG00005024540)	ascl1b (ENSMMDG00005024542)	irf7 (ENSMMDG00005024543)	ENSMMDG00005024544	ENSMMDG00005024545	RASSF7 (ENSMMDG00005024547)	LRRC56 (ENSMMDG00005024549)	hrasb (ENSMMDG00005004059)	ENSMMDG00005004074 #21	tsg101a (ENSMMDG00005004097) ##21	ldha (ENSMMDG00005004133) #24	BRSK2 (ENSMMDG00005004205)	ABTB2 (ENSMMDG00005004302)	B4GALNT4 (ENSMMDG00005004587)	IGSF22 (ENSMMDG00005004875)	tmem86a (ENSMMDG00005004878) #17	spty2d1 (ENSMMDG00005004880) #18	ENSMMDG00005004883	ENSMMDG00005004896	CPT1A (ENSMMDG00005004966)	ENSMMDG00005005575	mrpl23 (ENSMMDG00005005579)	igf2b (ENSMMDG00005005581)	th (ENSMMDG00005005585)
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	438	ENSHCOG00000009810	ehf (ENSHCOG00000009804)	pdhx (ENSHCOG00000009799)	ENSHCOG00000009765	slc1a2b (ENSHCOG00000009734)	PAMR1 (ENSHCOG00000009719)	FJX1 (ENSHCOG00000000793)	trim44 (ENSHCOG00000009638)	ldlrad3 (ENSHCOG00000009621)	ascl1b (ENSHCOG00000009583)	ENSHCOG00000009571	irf7 (ENSHCOG00000009561)	ENSHCOG00000009556	ENSHCOG00000009538	hrasb (ENSHCOG00000009530)	zgc:123278 (ENSHCOG00000009516) #21	tsg101a (ENSHCOG00000009506) ##21	ldha (ENSHCOG00000009461) #24	BRSK2 (ENSHCOG00000009433)	ABTB2 (ENSHCOG00000009387)	B4GALNT4 (ENSHCOG00000009344)	tmem86a (ENSHCOG00000009289) #17	spty2d1 (ENSHCOG00000009275) #18	uevld (ENSHCOG00000009237) #21	ENSHCOG00000009226	CPT1A (ENSHCOG00000009187)	ENSHCOG00000009124	mrpl23 (ENSHCOG00000009092)	igf2b (ENSHCOG00000009061)	th (ENSHCOG00000009036)	nap1l4a (ENSHCOG00000008558)
Tiger tail seahorse	MODERN SPECIES	438	ldlrad3 (ENSHCOG00000009621)	ascl1b (ENSHCOG00000009583)	ENSHCOG00000009571	irf7 (ENSHCOG00000009561)	ENSHCOG00000009556	ENSHCOG00000009538	hrasb (ENSHCOG00000009530)	zgc:123278 (ENSHCOG00000009516) #21	tsg101a (ENSHCOG00000009506) ##21	ldha (ENSHCOG00000009461) #24	BRSK2 (ENSHCOG00000009433)	ABTB2 (ENSHCOG00000009387)	B4GALNT4 (ENSHCOG00000009344)	tmem86a (ENSHCOG00000009289) #17	spty2d1 (ENSHCOG00000009275) #18	uevld (ENSHCOG00000009237) #21	ENSHCOG00000009226	CPT1A (ENSHCOG00000009187)	ENSHCOG00000009124	mrpl23 (ENSHCOG00000009092)	igf2b (ENSHCOG00000009061)	th (ENSHCOG00000009036)	nap1l4a (ENSHCOG00000008558)	phlda2 (ENSHCOG00000008547)	OSBPL5 (ENSHCOG00000008532)	ENSHCOG00000008507	PTPN5 (ENSHCOG00000008482) #16	dusp8a (ENSHCOG00000008448)	mob2a (ENSHCOG00000008442)	kcnj11 (ENSHCOG00000008432)	abcc8 (ENSHCOG00000008416)
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000177179	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000177179	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Carangaria	ANCESTRAL SPECIES	6	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.c.a	ENSGT00940000165530.b	ENSGT00940000157661.e.a.d	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Carangaria_A	ANCESTRAL SPECIES		ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.d	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Barramundi perch	MODERN SPECIES	97	lrrc4ca (ENSLCAG00010017337)	ehf (ENSLCAG00010017341)	pdhx (ENSLCAG00010017342)	ENSLCAG00010017345	slc1a2b (ENSLCAG00010017352)	PAMR1 (ENSLCAG00010017356)	FJX1 (ENSLCAG00010017360)	trim44 (ENSLCAG00010017362)	LDLRAD3 (ENSLCAG00010017364)	ascl1b (ENSLCAG00010017367)	irf7 (ENSLCAG00010017370)	ENSLCAG00010017378	RASSF7 (ENSLCAG00010017383)	LRRC56 (ENSLCAG00010017389)	hrasb (ENSLCAG00010017396)	zgc:123278 (ENSLCAG00010017412) #21	tsg101a (ENSLCAG00010017417) ##21	ldha (ENSLCAG00010017426) #24	BRSK2 (ENSLCAG00010017488)	ENSLCAG00010017510	ENSLCAG00010017513	ENSLCAG00010017518	B4GALNT4 (ENSLCAG00010017531)	IGSF22 (ENSLCAG00010017577)	tmem86a (ENSLCAG00010017592) #17	spty2d1 (ENSLCAG00010017601) #18	ENSLCAG00010017608	ENSLCAG00010017613	CPT1A (ENSLCAG00010017655)	ENSLCAG00010017998	mrpl23 (ENSLCAG00010018003)
Seriola	ANCESTRAL SPECIES	5	ENSGT00940000165765	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.d	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Greater amberjack	MODERN SPECIES	82	ric8b (ENSSDUG00000018890)	ENSSDUG00000018913	irf7 (ENSSDUG00000018933)	ENSSDUG00000018957	RASSF7 (ENSSDUG00000018980)	LRRC56 (ENSSDUG00000019013)	hrasb (ENSSDUG00000019086)	ENSSDUG00000019097	tsg101a (ENSSDUG00000019121) ##21	ldha (ENSSDUG00000019165) #24	BRSK2 (ENSSDUG00000019194)	ABTB2 (ENSSDUG00000019236)	B4GALNT4 (ENSSDUG00000019305)	tmem86a (ENSSDUG00000019334) #17	spty2d1 (ENSSDUG00000019340) #18	uevld (ENSSDUG00000019358) #21	ENSSDUG00000019412	CPT1A (ENSSDUG00000019472)	ENSSDUG00000019606	mrpl23 (ENSSDUG00000019634)	igf2b (ENSSDUG00000019646)	th (ENSSDUG00000019656)	nap1l4a (ENSSDUG00000019681)	phlda2 (ENSSDUG00000019713)	OSBPL5 (ENSSDUG00000019736)	ENSSDUG00000019821	PTPN5 (ENSSDUG00000019836) #16	dusp8a (ENSSDUG00000019851)	mob2a (ENSSDUG00000019872)	kcnj11 (ENSSDUG00000019894)	abcc8 (ENSSDUG00000019907)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2945											ENSSLDG00000012758	irf7 (ENSSLDG00000012716)	ENSSLDG00000012684	ENSSLDG00000012647	hrasb (ENSSLDG00000012627)	zgc:123278 (ENSSLDG00000012607) #21	tsg101a (ENSSLDG00000012574) ##21	ldha (ENSSLDG00000012539) #24	BRSK2 (ENSSLDG00000012469)	ABTB2 (ENSSLDG00000012374)	B4GALNT4 (ENSSLDG00000012313)	IGSF22 (ENSSLDG00000012276)	tmem86a (ENSSLDG00000012263) #17	spty2d1 (ENSSLDG00000012243) #18	uevld (ENSSLDG00000012216) #21	ENSSLDG00000012166	CPT1A (ENSSLDG00000012099)	ENSSLDG00000012078	mrpl23 (ENSSLDG00000012055)	igf2b (ENSSLDG00000012038)	th (ENSSLDG00000011976)
Yellowtail amberjack	MODERN SPECIES	2945		ENSSLDG00000012758	irf7 (ENSSLDG00000012716)	ENSSLDG00000012684	ENSSLDG00000012647	hrasb (ENSSLDG00000012627)	zgc:123278 (ENSSLDG00000012607) #21	tsg101a (ENSSLDG00000012574) ##21	ldha (ENSSLDG00000012539) #24	BRSK2 (ENSSLDG00000012469)	ABTB2 (ENSSLDG00000012374)	B4GALNT4 (ENSSLDG00000012313)	IGSF22 (ENSSLDG00000012276)	tmem86a (ENSSLDG00000012263) #17	spty2d1 (ENSSLDG00000012243) #18	uevld (ENSSLDG00000012216) #21	ENSSLDG00000012166	CPT1A (ENSSLDG00000012099)	ENSSLDG00000012078	mrpl23 (ENSSLDG00000012055)	igf2b (ENSSLDG00000012038)	th (ENSSLDG00000011976)	nap1l4a (ENSSLDG00000011919)	phlda2 (ENSSLDG00000011903)	OSBPL5 (ENSSLDG00000011869)	ENSSLDG00000011839	ENSSLDG00000011750	ENSSLDG00000011713 #16	dusp8a (ENSSLDG00000011695)	mob2a (ENSSLDG00000011651)	kcnj11 (ENSSLDG00000011621)
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT01040000244721	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a.c.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a
Turbot	MODERN SPECIES	1	ehf (ENSSMAG00000008372)	pdhx (ENSSMAG00000008380)	ENSSMAG00000008404	slc1a2b (ENSSMAG00000008421)	PAMR1 (ENSSMAG00000008471)	FJX1 (ENSSMAG00000008490)	trim44 (ENSSMAG00000008503)	LDLRAD3 (ENSSMAG00000008526)	ENSSMAG00000008555	irf7 (ENSSMAG00000008566)	ENSSMAG00000008622	RASSF7 (ENSSMAG00000008690)	ENSSMAG00000008721	ENSSMAG00000030374	HRAS (ENSSMAG00000025800)	zgc:123278 (ENSSMAG00000037018) #21	tsg101a (ENSSMAG00000008768) ##21	ldha (ENSSMAG00000008810) #24	ENSSMAG00000008855	ENSSMAG00000008949	ENSSMAG00000009030	IGSF22 (ENSSMAG00000009087)	tmem86a (ENSSMAG00000009109) #17	spty2d1 (ENSSMAG00000009117) #18	ENSSMAG00000009125	ENSSMAG00000009142	ENSSMAG00000009170	ENSSMAG00000009240	mrpl23 (ENSSMAG00000009264)	igf2b (ENSSMAG00000023920)	th (ENSSMAG00000009330)
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	16	NUAK1 (ENSCSEG00000010041)	ENSCSEG00000007228	prl2 (ENSCSEG00000007262)	szl (ENSCSEG00000007381)	ENSCSEG00000007386	NELL2 (ENSCSEG00000007407)	TMEM117 (ENSCSEG00000007537)	twf1a (ENSCSEG00000007561)	irak4 (ENSCSEG00000007582)	ADAMTS20 (ENSCSEG00000007625)	ENSCSEG00000007726	irf7 (ENSCSEG00000007816)	RASSF7 (ENSCSEG00000007878)	LRRC56 (ENSCSEG00000007914)	hrasb (ENSCSEG00000007927)	zgc:123278 (ENSCSEG00000007936) #21	tsg101a (ENSCSEG00000007946) ##21	ldha (ENSCSEG00000007969) #24	BRSK2 (ENSCSEG00000007990)	ENSCSEG00000008053	ABTB2 (ENSCSEG00000008058)	B4GALNT4 (ENSCSEG00000008093)	IGSF22 (ENSCSEG00000008147)	tmem86a (ENSCSEG00000008196) #17	spty2d1 (ENSCSEG00000008208) #18	uevld (ENSCSEG00000008221) #21	ENSCSEG00000008239	CPT1A (ENSCSEG00000008255)	ENSCSEG00000008380	mrpl23 (ENSCSEG00000008738)	igf2 (ENSCSEG00000008746)
Tongue sole	MODERN SPECIES	16	ENSCSEG00000007726	irf7 (ENSCSEG00000007816)	RASSF7 (ENSCSEG00000007878)	LRRC56 (ENSCSEG00000007914)	hrasb (ENSCSEG00000007927)	zgc:123278 (ENSCSEG00000007936) #21	tsg101a (ENSCSEG00000007946) ##21	ldha (ENSCSEG00000007969) #24	BRSK2 (ENSCSEG00000007990)	ENSCSEG00000008053	ABTB2 (ENSCSEG00000008058)	B4GALNT4 (ENSCSEG00000008093)	IGSF22 (ENSCSEG00000008147)	tmem86a (ENSCSEG00000008196) #17	spty2d1 (ENSCSEG00000008208) #18	uevld (ENSCSEG00000008221) #21	ENSCSEG00000008239	CPT1A (ENSCSEG00000008255)	ENSCSEG00000008380	mrpl23 (ENSCSEG00000008738)	igf2 (ENSCSEG00000008746)	th (ENSCSEG00000008767)	nap1l4a (ENSCSEG00000008814)	phlda2 (ENSCSEG00000008851)	ENSCSEG00000008861	OSBPL5 (ENSCSEG00000008867)	ENSCSEG00000008893	PTPN5 (ENSCSEG00000008920) #16	dusp8a (ENSCSEG00000008955)	mob2a (ENSCSEG00000008980)	kcnj11 (ENSCSEG00000009004)
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	20	ehf (ENSMAMG00000004705)	pdhx (ENSMAMG00000004692)	ENSMAMG00000004676	slc1a2b (ENSMAMG00000004641)	PAMR1 (ENSMAMG00000004620)	FJX1 (ENSMAMG00000004613)	trim44 (ENSMAMG00000004596)	ENSMAMG00000025157	LDLRAD3 (ENSMAMG00000004568)	ENSMAMG00000004542	irf7 (ENSMAMG00000004526)	ENSMAMG00000004473	RASSF7 (ENSMAMG00000004435)	ENSMAMG00000004387	HRAS (ENSMAMG00000025981)	zgc:123278 (ENSMAMG00000027176) #21	tsg101a (ENSMAMG00000004295) ##21	ldha (ENSMAMG00000004268) #24	ENSMAMG00000004222	ENSMAMG00000004112	ENSMAMG00000004036	tmem86a (ENSMAMG00000004015) #17	spty2d1 (ENSMAMG00000003996) #18	uevld (ENSMAMG00000003864) #21	ENSMAMG00000003781	ENSMAMG00000003668	ENSMAMG00000003639	mrpl23 (ENSMAMG00000003609)	igf2b (ENSMAMG00000025980)	th (ENSMAMG00000003562)	nap1l4a (ENSMAMG00000003526)
Zig-zag eel	MODERN SPECIES	20	LDLRAD3 (ENSMAMG00000004568)	ENSMAMG00000004542	irf7 (ENSMAMG00000004526)	ENSMAMG00000004473	RASSF7 (ENSMAMG00000004435)	ENSMAMG00000004387	HRAS (ENSMAMG00000025981)	zgc:123278 (ENSMAMG00000027176) #21	tsg101a (ENSMAMG00000004295) ##21	ldha (ENSMAMG00000004268) #24	ENSMAMG00000004222	ENSMAMG00000004112	ENSMAMG00000004036	tmem86a (ENSMAMG00000004015) #17	spty2d1 (ENSMAMG00000003996) #18	uevld (ENSMAMG00000003864) #21	ENSMAMG00000003781	ENSMAMG00000003668	ENSMAMG00000003639	mrpl23 (ENSMAMG00000003609)	igf2b (ENSMAMG00000025980)	th (ENSMAMG00000003562)	nap1l4a (ENSMAMG00000003526)	ENSMAMG00000003512	ENSMAMG00000003506	ENSMAMG00000003276	ENSMAMG00000003206 #16	dusp8a (ENSMAMG00000003190)	mob2a (ENSMAMG00000025316)	kcnj11 (ENSMAMG00000003175)	abcc8 (ENSMAMG00000002960)
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Climbing perch	MODERN SPECIES	19	LDLRAD3 (ENSATEG00000020146)	ENSATEG00000020134	irf7 (ENSATEG00000020093)	ENSATEG00000020053	RASSF7 (ENSATEG00000020029)	LRRC56 (ENSATEG00000020014)	HRAS (ENSATEG00000027858)	ENSATEG00000019981	tsg101a (ENSATEG00000019953) ##21	ldha (ENSATEG00000019929) #24	ENSATEG00000019882	ENSATEG00000019804	ENSATEG00000019658	tmem86a (ENSATEG00000027114) #17	spty2d1 (ENSATEG00000019561) #18	uevld (ENSATEG00000019496) #21	ENSATEG00000019460	ENSATEG00000019367	ENSATEG00000019339	mrpl23 (ENSATEG00000019314)	igf2b (ENSATEG00000027726)	th (ENSATEG00000019262)	nap1l4a (ENSATEG00000019230)	ENSATEG00000019210	ENSATEG00000019190	ENSATEG00000019158	ENSATEG00000019146 #16	dusp8a (ENSATEG00000019131)	mob2a (ENSATEG00000019107)	kcnj11 (ENSATEG00000026954)	abcc8 (ENSATEG00000018989)
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	17	ehf (ENSBSLG00000024290)	pdhx (ENSBSLG00000024109)	ENSBSLG00000024094	slc1a2b (ENSBSLG00000023635)	PAMR1 (ENSBSLG00000023566)	FJX1 (ENSBSLG00000023560)	trim44 (ENSBSLG00000023551)	LDLRAD3 (ENSBSLG00000023542)	ascl1b (ENSBSLG00000023532)	irf7 (ENSBSLG00000023522)	ENSBSLG00000023493	RASSF7 (ENSBSLG00000023484)	ENSBSLG00000023473	LRRC56 (ENSBSLG00000023458)	hrasb (ENSBSLG00000023427)	zgc:123278 (ENSBSLG00000023426) #21	DYRK4 (ENSBSLG00000023365)	ndufa9a (ENSBSLG00000023156)	GALNT8 (ENSBSLG00000023077)	GALNT8 (ENSBSLG00000023005)	ENSBSLG00000022998	ADA2 (ENSBSLG00000022984)	ENSBSLG00000022956	ENSBSLG00000022905	atp6v1e1a (ENSBSLG00000022815)	bcl2l13 (ENSBSLG00000022635)	wee2 (ENSBSLG00000022547)	dennd11 (ENSBSLG00000022481)	agk (ENSBSLG00000022254)	nup205 (ENSBSLG00000022094)	fgd4a (ENSBSLG00000021817)
Siamese fighting fish	MODERN SPECIES	17	CDH13 (ENSBSLG00000002193)	mlycd (ENSBSLG00000002221)	ENSBSLG00000002465	hsbp1a (ENSBSLG00000002996)	ENSBSLG00000003573	kcng4a (ENSBSLG00000003611)	ENSBSLG00000003649	wfdc1 (ENSBSLG00000003680)	tsg101a (ENSBSLG00000003768) ##21	ldha (ENSBSLG00000003863) #24	BRSK2 (ENSBSLG00000003957)	ABTB2 (ENSBSLG00000004053)	B4GALNT4 (ENSBSLG00000004164)	tmem86a (ENSBSLG00000004225) #17	ENSBSLG00000004232	uevld (ENSBSLG00000004240) #21	ENSBSLG00000004281	CPT1A (ENSBSLG00000004304)	ENSBSLG00000004747	mrpl23 (ENSBSLG00000004796)	igf2b (ENSBSLG00000004911)	th (ENSBSLG00000005632)	nap1l4a (ENSBSLG00000006153)	phlda2 (ENSBSLG00000006167)	OSBPL5 (ENSBSLG00000006847)	ENSBSLG00000007665	PTPN5 (ENSBSLG00000007806) #16	dusp8a (ENSBSLG00000007949)	mob2a (ENSBSLG00000007969)	kcnj11 (ENSBSLG00000008028)	abcc8 (ENSBSLG00000008173)
Eupercaria	ANCESTRAL SPECIES	6	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000177179	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000177179	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Ballan wrasse	MODERN SPECIES	6	lrrc4ca (ENSLBEG00000001381)	ehf (ENSLBEG00000001410)	pdhx (ENSLBEG00000001440)	slc1a2b (ENSLBEG00000001522)	PAMR1 (ENSLBEG00000001590)	FJX1 (ENSLBEG00000001614)	trim44 (ENSLBEG00000001630)	ldlrad3 (ENSLBEG00000001663)	ENSLBEG00000001704	ascl1b (ENSLBEG00000001730)	irf7 (ENSLBEG00000001747)	ENSLBEG00000001803	RASSF7 (ENSLBEG00000001838)	LRRC56 (ENSLBEG00000001887)	hrasb (ENSLBEG00000001905)	zgc:123278 (ENSLBEG00000001928) #21	tsg101a (ENSLBEG00000001961) ##21	ldha (ENSLBEG00000002015) #24	BRSK2 (ENSLBEG00000002070)	ABTB2 (ENSLBEG00000002138)	B4GALNT4 (ENSLBEG00000002186)	tmem86a (ENSLBEG00000002214) #17	spty2d1 (ENSLBEG00000002227) #18	ENSLBEG00000002243	ENSLBEG00000002275	CPT1A (ENSLBEG00000002446)	ENSLBEG00000002536	mrpl23 (ENSLBEG00000002580)	igf2b (ENSLBEG00000002605)	th (ENSLBEG00000002647)	nap1l4a (ENSLBEG00000002740)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Perciformes	ANCESTRAL SPECIES	7	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Pike perch	MODERN SPECIES	6	LDLRAD3 (ENSSLUG00000024062)	ascl1b (ENSSLUG00000024066)	irf7 (ENSSLUG00000024072)	ENSSLUG00000024083	RASSF7 (ENSSLUG00000024088)	ENSSLUG00000024099	hrasb (ENSSLUG00000024105)	ENSSLUG00000024112	tsg101a (ENSSLUG00000024123) ##21	ENSSLUG00000024135	ldha (ENSSLUG00000024139) #24	BRSK2 (ENSSLUG00000024148)	ABTB2 (ENSSLUG00000000096)	tmem86a (ENSSLUG00000000106) #17	spty2d1 (ENSSLUG00000000115) #18	uevld (ENSSLUG00000000121) #21	ENSSLUG00000000127	CPT1A (ENSSLUG00000000252)	ENSSLUG00000000475	mrpl23 (ENSSLUG00000000483)	ENSSLUG00000000486	igf2b (ENSSLUG00000000490)	th (ENSSLUG00000000502)	nap1l4a (ENSSLUG00000000520)	phlda2 (ENSSLUG00000000550)	OSBPL5 (ENSSLUG00000000730)	ENSSLUG00000001229	PTPN5 (ENSSLUG00000001233) #16	dusp8a (ENSSLUG00000001263)	mob2a (ENSSLUG00000001266)	kcnj11 (ENSSLUG00000001271)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	20	ehf (ENSCGOG00000019153)	pdhx (ENSCGOG00000019125)	ENSCGOG00000019119	slc1a2b (ENSCGOG00000019088)	PAMR1 (ENSCGOG00000019053)	FJX1 (ENSCGOG00000019051)	trim44 (ENSCGOG00000019048)	LDLRAD3 (ENSCGOG00000019041)	ascl1b (ENSCGOG00000019039)	irf7 (ENSCGOG00000018982)	ENSCGOG00000018980	ENSCGOG00000018978	RASSF7 (ENSCGOG00000018976)	LRRC56 (ENSCGOG00000018975)	hrasb (ENSCGOG00000018941)	zgc:123278 (ENSCGOG00000018939) #21	tsg101a (ENSCGOG00000018865) ##21	ldha (ENSCGOG00000018548) #24	BRSK2 (ENSCGOG00000017777)	ABTB2 (ENSCGOG00000017640)	B4GALNT4 (ENSCGOG00000017602)	tmem86a (ENSCGOG00000017595) #17	spty2d1 (ENSCGOG00000017592) #18	uevld (ENSCGOG00000017561) #21	ENSCGOG00000017540	CPT1A (ENSCGOG00000011521)	ENSCGOG00000011412	mrpl23 (ENSCGOG00000011406)	igf2b (ENSCGOG00000011317)	th (ENSCGOG00000011200)	nap1l4a (ENSCGOG00000011186)
Channel bull blenny	MODERN SPECIES	20	ascl1b (ENSCGOG00000019039)	irf7 (ENSCGOG00000018982)	ENSCGOG00000018980	ENSCGOG00000018978	RASSF7 (ENSCGOG00000018976)	LRRC56 (ENSCGOG00000018975)	hrasb (ENSCGOG00000018941)	zgc:123278 (ENSCGOG00000018939) #21	tsg101a (ENSCGOG00000018865) ##21	ldha (ENSCGOG00000018548) #24	BRSK2 (ENSCGOG00000017777)	ABTB2 (ENSCGOG00000017640)	B4GALNT4 (ENSCGOG00000017602)	tmem86a (ENSCGOG00000017595) #17	spty2d1 (ENSCGOG00000017592) #18	uevld (ENSCGOG00000017561) #21	ENSCGOG00000017540	CPT1A (ENSCGOG00000011521)	ENSCGOG00000011412	mrpl23 (ENSCGOG00000011406)	igf2b (ENSCGOG00000011317)	th (ENSCGOG00000011200)	nap1l4a (ENSCGOG00000011186)	phlda2 (ENSCGOG00000011184)	OSBPL5 (ENSCGOG00000009917)	ENSCGOG00000009864	PTPN5 (ENSCGOG00000009773) #16	dusp8a (ENSCGOG00000009760)	mob2a (ENSCGOG00000009737)	kcnj11 (ENSCGOG00000009734)	abcc8 (ENSCGOG00000004820)
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	21	rag2 (ENSCLMG00005022917)	ehf (ENSCLMG00005022919)	pdhx (ENSCLMG00005022921)	slc1a2b (ENSCLMG00005022927)	PAMR1 (ENSCLMG00005022939)	FJX1 (ENSCLMG00005022941)	trim44 (ENSCLMG00005022943)	LDLRAD3 (ENSCLMG00005022946)	ascl1b (ENSCLMG00005022948)	irf7 (ENSCLMG00005022952)	ENSCLMG00005022955	ENSCLMG00005022957	RASSF7 (ENSCLMG00005022959)	ENSCLMG00005022961	hrasb (ENSCLMG00005022962)	zgc:123278 (ENSCLMG00005022963) #21	tsg101a (ENSCLMG00005022965) ##21	ldha (ENSCLMG00005022968) #24	BRSK2 (ENSCLMG00005022972)	ABTB2 (ENSCLMG00005022973)	B4GALNT4 (ENSCLMG00005022977)	tmem86a (ENSCLMG00005022982) #17	spty2d1 (ENSCLMG00005022985) #18	uevld (ENSCLMG00005022987) #21	ENSCLMG00005022989	CPT1A (ENSCLMG00005023013)	ENSCLMG00005023038	mrpl23 (ENSCLMG00005023040)	igf2b (ENSCLMG00005023042)	th (ENSCLMG00005023045)	nap1l4a (ENSCLMG00005023050)
Lumpfish	MODERN SPECIES	21	ascl1b (ENSCLMG00005022948)	irf7 (ENSCLMG00005022952)	ENSCLMG00005022955	ENSCLMG00005022957	RASSF7 (ENSCLMG00005022959)	ENSCLMG00005022961	hrasb (ENSCLMG00005022962)	zgc:123278 (ENSCLMG00005022963) #21	tsg101a (ENSCLMG00005022965) ##21	ldha (ENSCLMG00005022968) #24	BRSK2 (ENSCLMG00005022972)	ABTB2 (ENSCLMG00005022973)	B4GALNT4 (ENSCLMG00005022977)	tmem86a (ENSCLMG00005022982) #17	spty2d1 (ENSCLMG00005022985) #18	uevld (ENSCLMG00005022987) #21	ENSCLMG00005022989	CPT1A (ENSCLMG00005023013)	ENSCLMG00005023038	mrpl23 (ENSCLMG00005023040)	igf2b (ENSCLMG00005023042)	th (ENSCLMG00005023045)	nap1l4a (ENSCLMG00005023050)	phlda2 (ENSCLMG00005023053)	OSBPL5 (ENSCLMG00005023063)	ENSCLMG00005023085	PTPN5 (ENSCLMG00005023087) #16	dusp8a (ENSCLMG00005023088)	mob2a (ENSCLMG00005023089)	kcnj11 (ENSCLMG00005023090)	abcc8 (ENSCLMG00005023091)
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Gilthead seabream	MODERN SPECIES	22	lrrc4ca (ENSSAUG00010023078)	ehf (ENSSAUG00010023077)	pdhx (ENSSAUG00010023074)	ENSSAUG00010023073	slc1a2b (ENSSAUG00010022503)	PAMR1 (ENSSAUG00010022499)	FJX1 (ENSSAUG00010022498)	trim44 (ENSSAUG00010022496)	LDLRAD3 (ENSSAUG00010022495)	ascl1b (ENSSAUG00010022494)	irf7 (ENSSAUG00010022492)	ENSSAUG00010022489	RASSF7 (ENSSAUG00010022488)	LRRC56 (ENSSAUG00010022487)	hrasb (ENSSAUG00010022485)	zgc:123278 (ENSSAUG00010022484) #21	tsg101a (ENSSAUG00010022458) ##21	ldha (ENSSAUG00010022447) #24	BRSK2 (ENSSAUG00010022402)	ABTB2 (ENSSAUG00010022380)	B4GALNT4 (ENSSAUG00010022368)	IGSF22 (ENSSAUG00010022360)	tmem86a (ENSSAUG00010022356) #17	spty2d1 (ENSSAUG00010022355) #18	ENSSAUG00010022307	ENSSAUG00010022294	CPT1A (ENSSAUG00010021025)	ENSSAUG00010021003	mrpl23 (ENSSAUG00010021001)	igf2b (ENSSAUG00010020999)	th (ENSSAUG00010020896)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	492	rag2 (ENSLCRG00005018303)	lrrc4ca (ENSLCRG00005018301)	ehf (ENSLCRG00005018298)	pdhx (ENSLCRG00005018275)	ENSLCRG00005018273	slc1a2b (ENSLCRG00005018256)	FJX1 (ENSLCRG00005018254)	PAMR1 (ENSLCRG00005018252)	trim44 (ENSLCRG00005018250)	ascl1b (ENSLCRG00005018247)	irf7 (ENSLCRG00005018240)	ENSLCRG00005018239	RASSF7 (ENSLCRG00005018238)	LRRC56 (ENSLCRG00005018237)	hrasb (ENSLCRG00005018236)	zgc:123278 (ENSLCRG00005018235) #21	tsg101a (ENSLCRG00005018190) ##21	ldha (ENSLCRG00005018166) #24	BRSK2 (ENSLCRG00005018116)	ABTB2 (ENSLCRG00005017730)	B4GALNT4 (ENSLCRG00005017498)	IGSF22 (ENSLCRG00005017490)	tmem86a (ENSLCRG00005017488) #17	spty2d1 (ENSLCRG00005017484) #18	uevld (ENSLCRG00005017478) #21	ENSLCRG00005017473	CPT1A (ENSLCRG00005017126)	ENSLCRG00005017120	mrpl23 (ENSLCRG00005017111)	igf2b (ENSLCRG00005017105)	th (ENSLCRG00005017076)
Large yellow croaker	MODERN SPECIES	492	ascl1b (ENSLCRG00005018247)	irf7 (ENSLCRG00005018240)	ENSLCRG00005018239	RASSF7 (ENSLCRG00005018238)	LRRC56 (ENSLCRG00005018237)	hrasb (ENSLCRG00005018236)	zgc:123278 (ENSLCRG00005018235) #21	tsg101a (ENSLCRG00005018190) ##21	ldha (ENSLCRG00005018166) #24	BRSK2 (ENSLCRG00005018116)	ABTB2 (ENSLCRG00005017730)	B4GALNT4 (ENSLCRG00005017498)	IGSF22 (ENSLCRG00005017490)	tmem86a (ENSLCRG00005017488) #17	spty2d1 (ENSLCRG00005017484) #18	uevld (ENSLCRG00005017478) #21	ENSLCRG00005017473	CPT1A (ENSLCRG00005017126)	ENSLCRG00005017120	mrpl23 (ENSLCRG00005017111)	igf2b (ENSLCRG00005017105)	th (ENSLCRG00005017076)	nap1l4a (ENSLCRG00005017075)	phlda2 (ENSLCRG00005017074)	OSBPL5 (ENSLCRG00005016106)	ENSLCRG00005016099	PTPN5 (ENSLCRG00005016073) #16	dusp8a (ENSLCRG00005016072)	mob2a (ENSLCRG00005016071)	kcnj11 (ENSLCRG00005016069)	abcc8 (ENSLCRG00005015744)
European seabass	DUPLICATION
European seabass	MODERN SPECIES	19	lrrc4ca (ENSDLAG00005034935)	ehf (ENSDLAG00005009299)	PDHX (ENSDLAG00005009245)	ENSDLAG00005009235	slc1a2b (ENSDLAG00005008895)	FJX1 (ENSDLAG00005008875)	PAMR1 (ENSDLAG00005008851)	trim44 (ENSDLAG00005008841)	LDLRAD3 (ENSDLAG00005032103)	ENSDLAG00005026884	irf7 (ENSDLAG00005008784)	ENSDLAG00005008751	RASSF7 (ENSDLAG00005008743)	LRRC56 (ENSDLAG00005008735)	HRAS (ENSDLAG00005027285)	zgc:123278 (ENSDLAG00005027579) #21	ldha (ENSDLAG00005008541) #24	tsg101a (ENSDLAG00005026667) ##21	ENSDLAG00005008477	ENSDLAG00005008300	ENSDLAG00005008104	IGSF22 (ENSDLAG00005031376)	tmem86a (ENSDLAG00005030964) #17	spty2d1 (ENSDLAG00005008073) #18	uevld (ENSDLAG00005008034) #21	ENSDLAG00005028220	ENSDLAG00005006785	ENSDLAG00005006747	mrpl23 (ENSDLAG00005031328)	igf2b (ENSDLAG00005035050)	th (ENSDLAG00005005156)
European seabass	MODERN SPECIES	19	ENSDLAG00005026884	irf7 (ENSDLAG00005008784)	ENSDLAG00005008751	RASSF7 (ENSDLAG00005008743)	LRRC56 (ENSDLAG00005008735)	HRAS (ENSDLAG00005027285)	zgc:123278 (ENSDLAG00005027579) #21	ldha (ENSDLAG00005008541) #24	tsg101a (ENSDLAG00005026667) ##21	ENSDLAG00005008477	ENSDLAG00005008300	ENSDLAG00005008104	IGSF22 (ENSDLAG00005031376)	tmem86a (ENSDLAG00005030964) #17	spty2d1 (ENSDLAG00005008073) #18	uevld (ENSDLAG00005008034) #21	ENSDLAG00005028220	ENSDLAG00005006785	ENSDLAG00005006747	mrpl23 (ENSDLAG00005031328)	igf2b (ENSDLAG00005035050)	th (ENSDLAG00005005156)	nap1l4a (ENSDLAG00005005001)	ENSDLAG00005034234	ENSDLAG00005002240	ENSDLAG00005002182	ENSDLAG00005002143 #16	dusp8a (ENSDLAG00005026479)	mob2a (ENSDLAG00005028153)	kcnj11 (ENSDLAG00005002099)	abcc8 (ENSDLAG00005001823)
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b.b	ENSGT00940000157661.e.a	ENSGT00940000165530.b	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Fugu	MODERN SPECIES	21	lrrc4ca (ENSTRUG00000002096)	ehf (ENSTRUG00000002146)	pdhx (ENSTRUG00000002330)	ENSTRUG00000024875	slc1a2b (ENSTRUG00000002723)	PAMR1 (ENSTRUG00000029931)	FJX1 (ENSTRUG00000003190)	trim44 (ENSTRUG00000003246)	LDLRAD3 (ENSTRUG00000011658)	ascl1b (ENSTRUG00000011651)	irf7 (ENSTRUG00000011418)	ENSTRUG00000011347	RASSF7 (ENSTRUG00000011270)	LRRC56 (ENSTRUG00000011257)	hrasb (ENSTRUG00000024825)	zgc:123278 (ENSTRUG00000027355) #21	tsg101a (ENSTRUG00000010968) ##21	ldha (ENSTRUG00000010800) #24	BRSK2 (ENSTRUG00000010512)	ABTB2 (ENSTRUG00000010317)	B4GALNT4 (ENSTRUG00000010186)	tmem86a (ENSTRUG00000010152) #17	spty2d1 (ENSTRUG00000010064) #18	ENSTRUG00000009935	ENSTRUG00000009911	CPT1A (ENSTRUG00000009681)	mrpl23 (ENSTRUG00000009637)	IGF2 (ENSTRUG00000030443)	th (ENSTRUG00000009267)	ENSTRUG00000008856	phlda2 (ENSTRUG00000008836)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003109	ENSTNIG00000003108	ENSTNIG00000000254	ENSTNIG00000003107	ENSTNIG00000000168	MYT1 (ENSTNIG00000003105)	PCMTD2 (ENSTNIG00000003104)	KIF1C (ENSTNIG00000003106)	pofut1 (ENSTNIG00000003103)	ENSTNIG00000003083	zdhhc12b (ENSTNIG00000002180)	uap1l1 (ENSTNIG00000003082)	ENSTNIG00000002343	tmub1 (ENSTNIG00000003081)	zgc:55781 (ENSTNIG00000001323)	ENSTNIG00000000735 #21	ENSTNIG00000003080	impa1 (ENSTNIG00000003079)	ENSTNIG00000000713	riok1 (ENSTNIG00000003078)	rpp40 (ENSTNIG00000003077)	CDY1 (ENSTNIG00000003076)	ENSTNIG00000003075	opn4.1 (ENSTNIG00000003074)	ENSTNIG00000003073	ccr9a (ENSTNIG00000003072)	bfsp2 (ENSTNIG00000003071)	klhl18 (ENSTNIG00000003070)	ENSTNIG00000003069	afg3l2 (ENSTNIG00000003068)	fastk (ENSTNIG00000003067)
Tetraodon	MODERN SPECIES	4	irf7 (ENSTNIG00000011381)	ENSTNIG00000011382	RASSF7 (ENSTNIG00000011383)	ENSTNIG00000011384	hrasb (ENSTNIG00000011385)	tsg101a (ENSTNIG00000011386) ##21	ldha (ENSTNIG00000011387) #24	BRSK2 (ENSTNIG00000011388)	ENSTNIG00000001158	ENSTNIG00000010453	B4GALNT4 (ENSTNIG00000010454)	ENSTNIG00000010455	ENSTNIG00000010456	tmem86a (ENSTNIG00000010457) #17	spty2d1 (ENSTNIG00000010458) #18	uevld (ENSTNIG00000010459) #21	ENSTNIG00000010460	CPT1A (ENSTNIG00000010461)	ENSTNIG00000010462	mrpl23 (ENSTNIG00000010463)	igf2b (ENSTNIG00000010464)	th (ENSTNIG00000010465)	nap1l4a (ENSTNIG00000010466)	phlda2 (ENSTNIG00000001230)	OSBPL5 (ENSTNIG00000010467)	ENSTNIG00000010468	PTPN5 (ENSTNIG00000019775) #16	dusp8a (ENSTNIG00000006726)	mob2a (ENSTNIG00000006644)	kcnj11 (ENSTNIG00000006645)	abcc8 (ENSTNIG00000006646)
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000177179	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Pomacentridae_A	ANCESTRAL SPECIES	27	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	73		ehf (ENSAPOG00000023227)	pdhx (ENSAPOG00000023280)	ENSAPOG00000023309	slc1a2b (ENSAPOG00000023393)	PAMR1 (ENSAPOG00000023444)	FJX1 (ENSAPOG00000023450)	trim44 (ENSAPOG00000023490)	LDLRAD3 (ENSAPOG00000023510)	ascl1b (ENSAPOG00000023536)	irf7 (ENSAPOG00000023591)	ENSAPOG00000023634	RASSF7 (ENSAPOG00000023652)	LRRC56 (ENSAPOG00000023670)	hrasb (ENSAPOG00000023684)	zgc:123278 (ENSAPOG00000023694) #21	tsg101a (ENSAPOG00000023730) ##21	ldha (ENSAPOG00000023749) #24	BRSK2 (ENSAPOG00000023798)	ABTB2 (ENSAPOG00000023899)	B4GALNT4 (ENSAPOG00000023944)
Spiny chromis	MODERN SPECIES	174													IGSF22 (ENSAPOG00000013485)	tmem86a (ENSAPOG00000013470) #17	ENSAPOG00000013452	uevld (ENSAPOG00000013438) #21	ENSAPOG00000013421	CPT1A (ENSAPOG00000013348)	ENSAPOG00000013246	mrpl23 (ENSAPOG00000013198)	igf2b (ENSAPOG00000013186)	th (ENSAPOG00000013175)	nap1l4a (ENSAPOG00000013089)	phlda2 (ENSAPOG00000013030)	OSBPL5 (ENSAPOG00000013008)	ENSAPOG00000012984	ENSAPOG00000012935	ENSAPOG00000012898	PTPN5 (ENSAPOG00000012845) #16	dusp8a (ENSAPOG00000012804)
Amphiprion	ANCESTRAL SPECIES	21	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2493											ascl1b (ENSAOCG00000011991)	irf7 (ENSAOCG00000011966)	ENSAOCG00000000737	ENSAOCG00000000735	hrasb (ENSAOCG00000011843)	zgc:123278 (ENSAOCG00000011817) #21	ENSAOCG00000011788	ENSAOCG00000011771
Clown anemonefish	MODERN SPECIES	1687	ENSAOCG00000014363	ENSAOCG00000014354	zgc:114188 (ENSAOCG00000014332)	sh3gl3b (ENSAOCG00000014292)	commd9 (ENSAOCG00000014278)	FCSK (ENSAOCG00000014265)	PCLAF (ENSAOCG00000014230)	nedd1 (ENSAOCG00000014209)	lyrm5b (ENSAOCG00000014129)	si:ch211-59o9.10 (ENSAOCG00000014120)	ambra1b (ENSAOCG00000014109)	ENSAOCG00000014007	B4GALNT4 (ENSAOCG00000013989)	tmem86a (ENSAOCG00000013969) #17	spty2d1 (ENSAOCG00000013957) #18	uevld (ENSAOCG00000013939) #21	ENSAOCG00000013842	CPT1A (ENSAOCG00000013799)	ENSAOCG00000013723	mrpl23 (ENSAOCG00000013679)
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	18	ehf (ENSAPEG00000009186)	pdhx (ENSAPEG00000009229)	ENSAPEG00000009285	slc1a2b (ENSAPEG00000009316)	PAMR1 (ENSAPEG00000009342)	FJX1 (ENSAPEG00000009359)	trim44 (ENSAPEG00000009379)	LDLRAD3 (ENSAPEG00000009389)	ENSAPEG00000009404	ascl1b (ENSAPEG00000009432)	irf7 (ENSAPEG00000009447)	RASSF7 (ENSAPEG00000009490)	ENSAPEG00000009517	LRRC56 (ENSAPEG00000009535)	hrasb (ENSAPEG00000009546)	zgc:123278 (ENSAPEG00000009560) #21	tsg101a (ENSAPEG00000009574) ##21	ldha (ENSAPEG00000009620) #24	BRSK2 (ENSAPEG00000009703)	ABTB2 (ENSAPEG00000009791)	B4GALNT4 (ENSAPEG00000009874)	tmem86a (ENSAPEG00000009944) #17	spty2d1 (ENSAPEG00000009961) #18	uevld (ENSAPEG00000009988) #21	ENSAPEG00000010086	CPT1A (ENSAPEG00000010158)	ENSAPEG00000010250	mrpl23 (ENSAPEG00000010298)	igf2b (ENSAPEG00000010328)	th (ENSAPEG00000010338)	nap1l4a (ENSAPEG00000010404)
Orange clownfish	MODERN SPECIES	18	ENSAPEG00000009404	ascl1b (ENSAPEG00000009432)	irf7 (ENSAPEG00000009447)	RASSF7 (ENSAPEG00000009490)	ENSAPEG00000009517	LRRC56 (ENSAPEG00000009535)	hrasb (ENSAPEG00000009546)	zgc:123278 (ENSAPEG00000009560) #21	tsg101a (ENSAPEG00000009574) ##21	ldha (ENSAPEG00000009620) #24	BRSK2 (ENSAPEG00000009703)	ABTB2 (ENSAPEG00000009791)	B4GALNT4 (ENSAPEG00000009874)	tmem86a (ENSAPEG00000009944) #17	spty2d1 (ENSAPEG00000009961) #18	uevld (ENSAPEG00000009988) #21	ENSAPEG00000010086	CPT1A (ENSAPEG00000010158)	ENSAPEG00000010250	mrpl23 (ENSAPEG00000010298)	igf2b (ENSAPEG00000010328)	th (ENSAPEG00000010338)	nap1l4a (ENSAPEG00000010404)	phlda2 (ENSAPEG00000010461)	OSBPL5 (ENSAPEG00000010496)	ENSAPEG00000010608	ENSAPEG00000010646	PTPN5 (ENSAPEG00000010682) #16	dusp8a (ENSAPEG00000010753)	mob2a (ENSAPEG00000010878)	kcnj11 (ENSAPEG00000010911)
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	479						PAMR1 (ENSSPAG00000007602)	FJX1 (ENSSPAG00000007587)	trim44 (ENSSPAG00000007572)	LDLRAD3 (ENSSPAG00000007510)	ascl1b (ENSSPAG00000007499)	irf7 (ENSSPAG00000007459)	ENSSPAG00000007434	ENSSPAG00000007407	ENSSPAG00000007389	hrasb (ENSSPAG00000007357)	ENSSPAG00000007341 #21	tsg101a (ENSSPAG00000007280) ##21	ldha (ENSSPAG00000007238) #24	BRSK2 (ENSSPAG00000007182)
Bicolor damselfish	MODERN SPECIES	1135														tmem86a (ENSSPAG00000001802) #17	spty2d1 (ENSSPAG00000001795) #18	uevld (ENSSPAG00000001762) #21	ENSSPAG00000001717	CPT1A (ENSSPAG00000001656)	ENSSPAG00000001616	mrpl23 (ENSSPAG00000001601)	igf2b (ENSSPAG00000001589)	th (ENSSPAG00000001549)	nap1l4a (ENSSPAG00000001486)
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	107			ehf (ENSACIG00000001410)	pdhx (ENSACIG00000001382)	ENSACIG00000001375	slc1a2b (ENSACIG00000001342)	PAMR1 (ENSACIG00000001270)	FJX1 (ENSACIG00000001263)	trim44 (ENSACIG00000001250)	LDLRAD3 (ENSACIG00000001209)	ascl1b (ENSACIG00000001189)	irf7 (ENSACIG00000000883)	ENSACIG00000000840	ENSACIG00000000724	hrasb (ENSACIG00000000699)	zgc:123278 (ENSACIG00000000684) #21	tsg101a (ENSACIG00000000649) ##21	ldha (ENSACIG00000000628) #24	ENSACIG00000000617	BRSK2 (ENSACIG00000000572)	ABTB2 (ENSACIG00000000525)	B4GALNT4 (ENSACIG00000000438)	tmem86a (ENSACIG00000000417) #17	ENSACIG00000000333	uevld (ENSACIG00000000230) #21	ENSACIG00000000153	CPT1A (ENSACIG00000024332)	ENSACIG00000024328	mrpl23 (ENSACIG00000024327)
Midas cichlid	MODERN SPECIES	107	LDLRAD3 (ENSACIG00000001209)	ascl1b (ENSACIG00000001189)	irf7 (ENSACIG00000000883)	ENSACIG00000000840	ENSACIG00000000724	hrasb (ENSACIG00000000699)	zgc:123278 (ENSACIG00000000684) #21	tsg101a (ENSACIG00000000649) ##21	ldha (ENSACIG00000000628) #24	ENSACIG00000000617	BRSK2 (ENSACIG00000000572)	ABTB2 (ENSACIG00000000525)	B4GALNT4 (ENSACIG00000000438)	tmem86a (ENSACIG00000000417) #17	ENSACIG00000000333	uevld (ENSACIG00000000230) #21	ENSACIG00000000153	CPT1A (ENSACIG00000024332)	ENSACIG00000024328	mrpl23 (ENSACIG00000024327)
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	19	ENSONIG00000033378	ehf (ENSONIG00000014592)	pdhx (ENSONIG00000014588)	ENSONIG00000027761	ENSONIG00000034287	slc1a2b (ENSONIG00000014579)	PAMR1 (ENSONIG00000014578)	FJX1 (ENSONIG00000014577)	trim44 (ENSONIG00000014576)	ascl1b (ENSONIG00000020440)	irf7 (ENSONIG00000014571)	ENSONIG00000014569	RASSF7 (ENSONIG00000014567)	LRRC56 (ENSONIG00000014563)	hras (ENSONIG00000032375)	zgc:123278 (ENSONIG00000014558) #21	tsg101a (ENSONIG00000014551) ##21	ldha (ENSONIG00000014546) #24	BRSK2 (ENSONIG00000014540)	ABTB2 (ENSONIG00000014537)	B4GALNT4 (ENSONIG00000014531)	tmem86a (ENSONIG00000038141) #17	spty2d1 (ENSONIG00000014525) #18	uevld (ENSONIG00000014522) #21	ENSONIG00000014519	CPT1A (ENSONIG00000014502)	ENSONIG00000014501	mrpl23 (ENSONIG00000033240)	igf2b (ENSONIG00000039552)	th (ENSONIG00000014492)	nap1l4a (ENSONIG00000014488)
Nile tilapia	MODERN SPECIES	19	trim44 (ENSONIG00000014576)	ascl1b (ENSONIG00000020440)	irf7 (ENSONIG00000014571)	ENSONIG00000014569	RASSF7 (ENSONIG00000014567)	LRRC56 (ENSONIG00000014563)	hras (ENSONIG00000032375)	zgc:123278 (ENSONIG00000014558) #21	tsg101a (ENSONIG00000014551) ##21	ldha (ENSONIG00000014546) #24	BRSK2 (ENSONIG00000014540)	ABTB2 (ENSONIG00000014537)	B4GALNT4 (ENSONIG00000014531)	tmem86a (ENSONIG00000038141) #17	spty2d1 (ENSONIG00000014525) #18	uevld (ENSONIG00000014522) #21	ENSONIG00000014519	CPT1A (ENSONIG00000014502)	ENSONIG00000014501	mrpl23 (ENSONIG00000033240)	igf2b (ENSONIG00000039552)	th (ENSONIG00000014492)	nap1l4a (ENSONIG00000014488)	phlda2 (ENSONIG00000020439)	ENSONIG00000029488	OSBPL5 (ENSONIG00000009684)	ENSONIG00000037111	PTPN5 (ENSONIG00000010519) #16	dusp8a (ENSONIG00000028676)	mob2a (ENSONIG00000035681)	kcnj11 (ENSONIG00000010513)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Lyretail cichlid	MODERN SPECIES	164																uevld (ENSNBRG00000000475) #21
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00940000174496	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626
Haplochromini_B	ANCESTRAL SPECIES	40	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159	ENSGT00440000039564.a.b	ENSGT00530000063825.A.c.f.e	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1110	rag1 (ENSMZEG00005017704)	rag2 (ENSMZEG00005017702)	ehf (ENSMZEG00005017684)	pdhx (ENSMZEG00005017679)	slc1a2b (ENSMZEG00005017667)	PAMR1 (ENSMZEG00005017643)	FJX1 (ENSMZEG00005017634)	trim44 (ENSMZEG00005017628)	LDLRAD3 (ENSMZEG00005017622)	ascl1b (ENSMZEG00005017616)	irf7 (ENSMZEG00005017610)	ENSMZEG00005017602	RASSF7 (ENSMZEG00005017596)	ENSMZEG00005017590	hrasb (ENSMZEG00005017583)	zgc:123278 (ENSMZEG00005017576) #21	tsg101a (ENSMZEG00005017560) ##21	ldha (ENSMZEG00005017554) #24	ENSMZEG00005017545	BRSK2 (ENSMZEG00005017531)	ABTB2 (ENSMZEG00005017523)	B4GALNT4 (ENSMZEG00005017511)	tmem86a (ENSMZEG00005017503) #17	spty2d1 (ENSMZEG00005017500) #18	uevld (ENSMZEG00005017493) #21	ENSMZEG00005017488	CPT1A (ENSMZEG00005017475)	ENSMZEG00005017464	mrpl23 (ENSMZEG00005017456)	igf2b (ENSMZEG00005017446)	th (ENSMZEG00005017439)
Zebra mbuna	MODERN SPECIES	1110	ascl1b (ENSMZEG00005017616)	irf7 (ENSMZEG00005017610)	ENSMZEG00005017602	RASSF7 (ENSMZEG00005017596)	ENSMZEG00005017590	hrasb (ENSMZEG00005017583)	zgc:123278 (ENSMZEG00005017576) #21	tsg101a (ENSMZEG00005017560) ##21	ldha (ENSMZEG00005017554) #24	ENSMZEG00005017545	BRSK2 (ENSMZEG00005017531)	ABTB2 (ENSMZEG00005017523)	B4GALNT4 (ENSMZEG00005017511)	tmem86a (ENSMZEG00005017503) #17	spty2d1 (ENSMZEG00005017500) #18	uevld (ENSMZEG00005017493) #21	ENSMZEG00005017488	CPT1A (ENSMZEG00005017475)	ENSMZEG00005017464	mrpl23 (ENSMZEG00005017456)	igf2b (ENSMZEG00005017446)	th (ENSMZEG00005017439)	nap1l4a (ENSMZEG00005017428)	phlda2 (ENSMZEG00005017422)	SLC15A5 (ENSMZEG00005017416)	ccdc34 (ENSMZEG00005017412)	RAB19 (ENSMZEG00005017407)	hdhd5 (ENSMZEG00005017405)	ccdc77 (ENSMZEG00005017396)	ush1c (ENSMZEG00005017390)	abcc8 (ENSMZEG00005017373)
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	19	ENSACLG00000000214	ehf (ENSACLG00000000532)	pdhx (ENSACLG00000000724)	slc1a2b (ENSACLG00000000753)	PAMR1 (ENSACLG00000000795)	FJX1 (ENSACLG00000000811)	trim44 (ENSACLG00000000820)	LDLRAD3 (ENSACLG00000001043)	ascl1b (ENSACLG00000001059)	irf7 (ENSACLG00000001080)	ENSACLG00000001115	RASSF7 (ENSACLG00000001135)	LRRC56 (ENSACLG00000001154)	hrasb (ENSACLG00000001181)	ENSACLG00000001204	zgc:123278 (ENSACLG00000001212) #21	tsg101a (ENSACLG00000001235) ##21	ldha (ENSACLG00000001291) #24	BRSK2 (ENSACLG00000001508)	ENSACLG00000001556	ENSACLG00000001561	ABTB2 (ENSACLG00000001589)	B4GALNT4 (ENSACLG00000002102)	ENSACLG00000002124	tmem86a (ENSACLG00000002146) #17	spty2d1 (ENSACLG00000002153) #18	uevld (ENSACLG00000002158) #21	ENSACLG00000002172	CPT1A (ENSACLG00000002222)	ENSACLG00000002284	mrpl23 (ENSACLG00000002565)
Eastern happy	MODERN SPECIES	19	RASSF7 (ENSACLG00000001135)	LRRC56 (ENSACLG00000001154)	hrasb (ENSACLG00000001181)	ENSACLG00000001204	zgc:123278 (ENSACLG00000001212) #21	tsg101a (ENSACLG00000001235) ##21	ldha (ENSACLG00000001291) #24	BRSK2 (ENSACLG00000001508)	ENSACLG00000001556	ENSACLG00000001561	ABTB2 (ENSACLG00000001589)	B4GALNT4 (ENSACLG00000002102)	ENSACLG00000002124	tmem86a (ENSACLG00000002146) #17	spty2d1 (ENSACLG00000002153) #18	uevld (ENSACLG00000002158) #21	ENSACLG00000002172	CPT1A (ENSACLG00000002222)	ENSACLG00000002284	mrpl23 (ENSACLG00000002565)	igf2b (ENSACLG00000002592)	th (ENSACLG00000002667)	nap1l4a (ENSACLG00000002761)	phlda2 (ENSACLG00000002779)	endouc (ENSACLG00000002802)	OSBPL5 (ENSACLG00000002936)	ENSACLG00000002969	ENSACLG00000003011	PTPN5 (ENSACLG00000003025) #16	dusp8a (ENSACLG00000003062)	mob2a (ENSACLG00000003081)
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	373	rag2 (ENSPNYG00000014893)	lrrc4ca (ENSPNYG00000014911)	ehf (ENSPNYG00000014926)	pdhx (ENSPNYG00000014936)	slc1a2b (ENSPNYG00000014946)	PAMR1 (ENSPNYG00000014973)	FJX1 (ENSPNYG00000014989)	trim44 (ENSPNYG00000014999)	LDLRAD3 (ENSPNYG00000015010)	ascl1b (ENSPNYG00000015020)	irf7 (ENSPNYG00000015033)	ENSPNYG00000015069	RASSF7 (ENSPNYG00000015084)	ENSPNYG00000015110	hrasb (ENSPNYG00000015124)	zgc:123278 (ENSPNYG00000015139) #21	tsg101a (ENSPNYG00000015156) ##21	ldha (ENSPNYG00000015184) #24	BRSK2 (ENSPNYG00000015210)	ABTB2 (ENSPNYG00000015269)	B4GALNT4 (ENSPNYG00000015331)	tmem86a (ENSPNYG00000015365) #17	spty2d1 (ENSPNYG00000015376) #18	ENSPNYG00000015410	uevld (ENSPNYG00000015419) #21	ENSPNYG00000015438	CPT1A (ENSPNYG00000015485)	ENSPNYG00000015527	mrpl23 (ENSPNYG00000015541)	igf2b (ENSPNYG00000015570)	th (ENSPNYG00000015595)
P. nyererei	MODERN SPECIES	373	ascl1b (ENSPNYG00000015020)	irf7 (ENSPNYG00000015033)	ENSPNYG00000015069	RASSF7 (ENSPNYG00000015084)	ENSPNYG00000015110	hrasb (ENSPNYG00000015124)	zgc:123278 (ENSPNYG00000015139) #21	tsg101a (ENSPNYG00000015156) ##21	ldha (ENSPNYG00000015184) #24	BRSK2 (ENSPNYG00000015210)	ABTB2 (ENSPNYG00000015269)	B4GALNT4 (ENSPNYG00000015331)	tmem86a (ENSPNYG00000015365) #17	spty2d1 (ENSPNYG00000015376) #18	ENSPNYG00000015410	uevld (ENSPNYG00000015419) #21	ENSPNYG00000015438	CPT1A (ENSPNYG00000015485)	ENSPNYG00000015527	mrpl23 (ENSPNYG00000015541)	igf2b (ENSPNYG00000015570)	th (ENSPNYG00000015595)	nap1l4a (ENSPNYG00000015622)	phlda2 (ENSPNYG00000015634)	OSBPL5 (ENSPNYG00000015658)	ENSPNYG00000015726
Burton s mouthbrooder	DUPLICATION
Burton s mouthbrooder	MODERN SPECIES	626													RASSF7 (ENSHBUG00000011965)	ENSHBUG00000011981	hrasb (ENSHBUG00000011998)	zgc:123278 (ENSHBUG00000012003) #21	tsg101a (ENSHBUG00000012014) ##21	ldha (ENSHBUG00000012051) #24	BRSK2 (ENSHBUG00000012065)	ABTB2 (ENSHBUG00000012078)	B4GALNT4 (ENSHBUG00000012086)	tmem86a (ENSHBUG00000012095) #17	spty2d1 (ENSHBUG00000012102) #18	uevld (ENSHBUG00000012112) #21	ENSHBUG00000012180	CPT1A (ENSHBUG00000012303)	ENSHBUG00000012346
Burton s mouthbrooder	MODERN SPECIES	626					RASSF7 (ENSHBUG00000011965)	ENSHBUG00000011981	hrasb (ENSHBUG00000011998)	zgc:123278 (ENSHBUG00000012003) #21	tsg101a (ENSHBUG00000012014) ##21	ldha (ENSHBUG00000012051) #24	BRSK2 (ENSHBUG00000012065)	ABTB2 (ENSHBUG00000012078)	B4GALNT4 (ENSHBUG00000012086)	tmem86a (ENSHBUG00000012095) #17	spty2d1 (ENSHBUG00000012102) #18	uevld (ENSHBUG00000012112) #21	ENSHBUG00000012180	CPT1A (ENSHBUG00000012303)	ENSHBUG00000012346
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Oryzias	ANCESTRAL SPECIES	27						ENSGT01030000234567.B.a.a.b.a.a.c.a	ENSGT00940000160682.b.c.a	ENSGT00940000157236.j	ENSGT00730000111146	ENSGT01010000222336.b.a.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000153362.b
Oryzias_b	ANCESTRAL SPECIES		ENSGT00940000157236.j	ENSGT00730000111146	ENSGT01010000222336.b.a.b.b	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160004.c	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b	ENSGT00940000156626.rb
Indian medaka	MODERN SPECIES	15	ftsj1 (ENSOMEG00000018497)	ENSOMEG00000018543	irf7 (ENSOMEG00000018603)	ENSOMEG00000018652	RASSF7 (ENSOMEG00000018673)	ENSOMEG00000018696	hrasb (ENSOMEG00000018719)	tsg101a (ENSOMEG00000018807) ##21	ldha (ENSOMEG00000018751) #24	ENSOMEG00000000486	BRSK2 (ENSOMEG00000018830)	ABTB2 (ENSOMEG00000018865)	B4GALNT4 (ENSOMEG00000018898)	tmem86a (ENSOMEG00000018919) #17	spty2d1 (ENSOMEG00000018932) #18	uevld (ENSOMEG00000018963) #21	ENSOMEG00000019015	CPT1A (ENSOMEG00000019071)	ENSOMEG00000019110	mrpl23 (ENSOMEG00000019132)	ENSOMEG00000019150	ENSOMEG00000019252	exoc3l1 (ENSOMEG00000000507)	prmt7 (ENSOMEG00000019317)	ciapin1 (ENSOMEG00000019354)	ENSOMEG00000019368	coq9 (ENSOMEG00000019408)	polr2c (ENSOMEG00000019444)	ENSOMEG00000019476	ENSOMEG00000019492	adat1 (ENSOMEG00000019510)
Javanese ricefish	DUPLICATION
Javanese ricefish	MODERN SPECIES	8	mfsd12a (ENSOJAG00000007690)	cyp7a1 (ENSOJAG00000007658)	CDH6 (ENSOJAG00000007618)	zgc:56556 (ENSOJAG00000007603)	TMEM70 (ENSOJAG00000007576)	ENSOJAG00000007565	paxip1 (ENSOJAG00000007377)	en2b (ENSOJAG00000007331)	cnpy1 (ENSOJAG00000007322)	amph (ENSOJAG00000007061)	inhbab (ENSOJAG00000006971)	ENSOJAG00000006953	ENSOJAG00000006791	dnajc1 (ENSOJAG00000006714)	zgc:55781 (ENSOJAG00000006697)	ENSOJAG00000019185 #21	ENSOJAG00000019145	riok1 (ENSOJAG00000019057)	rpp40 (ENSOJAG00000019039)	CDYL (ENSOJAG00000019021)	ENSOJAG00000018853	opn4.1 (ENSOJAG00000018809)	ccr9a (ENSOJAG00000018803)	bfsp2 (ENSOJAG00000018787)	klhl18 (ENSOJAG00000018753)	ENSOJAG00000013942	ENSOJAG00000013597	PHB2 (ENSOJAG00000013388)	fam49ba (ENSOJAG00000013357)	nmnat2 (ENSOJAG00000013307)	LAMC2 (ENSOJAG00000013288)
Javanese ricefish	MODERN SPECIES	20	chtf8 (ENSOJAG00000016188)	utp4 (ENSOJAG00000016200)	setd6 (ENSOJAG00000016297)	ENSOJAG00000016421	B3GNT9 (ENSOJAG00000016429)	ENSOJAG00000016440	TAFA5 (ENSOJAG00000016560)	brd1b (ENSOJAG00000016578)	ftsj1 (ENSOJAG00000016593)	ENSOJAG00000016602	irf7 (ENSOJAG00000016615)	ENSOJAG00000016692	RASSF7 (ENSOJAG00000016754)	ENSOJAG00000016767	hrasb (ENSOJAG00000016776)	zgc:123278 (ENSOJAG00000016805) #21	tsg101a (ENSOJAG00000016819) ##21	ldha (ENSOJAG00000016832) #24	BRSK2 (ENSOJAG00000016989)	B4GALNT4 (ENSOJAG00000018050)	ENSOJAG00000018148	ENSOJAG00000018162	ENSOJAG00000018182	tmem86a (ENSOJAG00000018198) #17	spty2d1 (ENSOJAG00000000097) #18	ENSOJAG00000000124	ENSOJAG00000000160	CPT1A (ENSOJAG00000000267)	ENSOJAG00000000379	mrpl23 (ENSOJAG00000000400)	igf2b (ENSOJAG00000000406)
Oryzias_a	ANCESTRAL SPECIES	1									ENSGT00940000157236.j	ENSGT00730000111146	ENSGT01010000222336.b.a.b.b	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.d	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b	ENSGT00940000159535	ENSGT00940000156870
Japanese Medaka HdrR	MODERN SPECIES	20									brd1b (ENSORLG00000022443)	ftsj1 (ENSORLG00000028355)	ENSORLG00000018898	ENSORLG00000028228	RASSF7 (ENSORLG00000025425)	ENSORLG00000024757	hrasb (ENSORLG00000018912)	zgc:123278 (ENSORLG00000023170) #21	tsg101a (ENSORLG00000030185) ##21	ldha (ENSORLG00000003767) #24	ENSORLG00000027403	B4GALNT4 (ENSORLG00000029452)	ENSORLG00000026399	tmem86a (ENSORLG00000018399) #17	spty2d1 (ENSORLG00000028319) #18	ENSORLG00000026474	ENSORLG00000023820	CPT1A (ENSORLG00000030183)	ENSORLG00000029604	mrpl23 (ENSORLG00000025383)	ENSORLG00000028425	ENSORLG00000022958	ENSORLG00000024400
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	4680																ENSOSIG00000012130 #21
Chinese medaka	MODERN SPECIES	4998															hrasb (ENSOSIG00000002442)	ENSOSIG00000002488 #21	ENSOSIG00000002496
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00940000159310	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00940000159310	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
NAME_4	ANCESTRAL SPECIES	51	ENSGT00940000157405.c.a	ENSGT00940000159310	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Mummichog	MODERN SPECIES	529	ENSFHEG00000009754	ehf (ENSFHEG00000009788)	pdhx (ENSFHEG00000009802)	ENSFHEG00000009811	slc1a2b (ENSFHEG00000009858)	PAMR1 (ENSFHEG00000009886)	FJX1 (ENSFHEG00000009907)	trim44 (ENSFHEG00000009931)	LDLRAD3 (ENSFHEG00000009941)	ascl1b (ENSFHEG00000009951)	irf7 (ENSFHEG00000009999)	ENSFHEG00000010014	RASSF7 (ENSFHEG00000010036)	LRRC56 (ENSFHEG00000010046)	hrasb (ENSFHEG00000010055)	zgc:123278 (ENSFHEG00000010061) #21	tsg101a (ENSFHEG00000010111) ##21	ldha (ENSFHEG00000010165) #24	BRSK2 (ENSFHEG00000010260)	ABTB2 (ENSFHEG00000010362)	B4GALNT4 (ENSFHEG00000010606)	tmem86a (ENSFHEG00000010634) #17	spty2d1 (ENSFHEG00000010640) #18	ENSFHEG00000010693	ENSFHEG00000010774	CPT1A (ENSFHEG00000010907)	ENSFHEG00000010957	mrpl23 (ENSFHEG00000010978)	igf2b (ENSFHEG00000010989)	th (ENSFHEG00000011030)	nap1l4a (ENSFHEG00000011047)
Sheepshead minnow	MODERN SPECIES	236			ehf (ENSCVAG00000008492)	pdhx (ENSCVAG00000008521)	ENSCVAG00000008531	slc1a2b (ENSCVAG00000008567)	PAMR1 (ENSCVAG00000008588)	FJX1 (ENSCVAG00000008596)	trim44 (ENSCVAG00000008598)	LDLRAD3 (ENSCVAG00000008601)	ascl1b (ENSCVAG00000008611)	irf7 (ENSCVAG00000008618)	ENSCVAG00000008637	ENSCVAG00000008655	hrasb (ENSCVAG00000008670)	zgc:123278 (ENSCVAG00000008680) #21	tsg101a (ENSCVAG00000008740) ##21	ldha (ENSCVAG00000008785) #24	BRSK2 (ENSCVAG00000008879)	ABTB2 (ENSCVAG00000008943)	ENSCVAG00000008958	tmem86a (ENSCVAG00000008966) #17	spty2d1 (ENSCVAG00000008972) #18	ENSCVAG00000008979	ENSCVAG00000008988
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00940000159310	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Poecilia	ANCESTRAL SPECIES	5	ENSGT00940000159310	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
NAME_6	ANCESTRAL SPECIES	70									ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00990000206001	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Amazon molly	MODERN SPECIES	537							ENSPFOG00000024659	ascl1b (ENSPFOG00000020633)	irf7 (ENSPFOG00000003428)	ENSPFOG00000003171	ENSPFOG00000003134	RASSF7 (ENSPFOG00000003071)	LRRC56 (ENSPFOG00000002973)	tsg101a (ENSPFOG00000002824) ##21	hrasb (ENSPFOG00000002595)	zgc:123278 (ENSPFOG00000023171) #21	tsg101a (ENSPFOG00000002454) ##21	ldha (ENSPFOG00000002642) #24	BRSK2 (ENSPFOG00000001962)	ABTB2 (ENSPFOG00000001615)	B4GALNT4 (ENSPFOG00000001066)	tmem86a (ENSPFOG00000000874) #17	tmem86a (ENSPFOG00000023264) #17	spty2d1 (ENSPFOG00000000809) #18
Guppy	MODERN SPECIES	458	ehf (ENSPREG00000019055)	ENSPREG00000019072	pdhx (ENSPREG00000019081)	ENSPREG00000019099	slc1a2b (ENSPREG00000019113)	PAMR1 (ENSPREG00000019160)	FJX1 (ENSPREG00000019196)	trim44 (ENSPREG00000019211)	LDLRAD3 (ENSPREG00000019228)	ENSPREG00000019249	ascl1b (ENSPREG00000019266)	irf7 (ENSPREG00000019278)	RASSF7 (ENSPREG00000019305)	LRRC56 (ENSPREG00000019325)	hrasb (ENSPREG00000019341)	zgc:123278 (ENSPREG00000019343) #21	tsg101a (ENSPREG00000019375) ##21	ldha (ENSPREG00000019471) #24	BRSK2 (ENSPREG00000019521)	ABTB2 (ENSPREG00000019630)	B4GALNT4 (ENSPREG00000019698)	tmem86a (ENSPREG00000019727) #17	spty2d1 (ENSPREG00000019769) #18	ENSPREG00000019784	ENSPREG00000019811	CPT1A (ENSPREG00000019861)	ENSPREG00000019917	mrpl23 (ENSPREG00000019951)	igf2 (ENSPREG00000019975)	th (ENSPREG00000020052)	nap1l4a (ENSPREG00000020100)
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00940000159310	ENSGT00940000161995.d	ENSGT00940000156046	ENSGT00530000063822.a.a	ENSGT00940000155379.g.b	ENSGT00940000154234.a.c	ENSGT00390000016768	ENSGT00440000034605	ENSGT00940000160574	ENSGT00940000165300	ENSGT00940000160931	ENSGT00950000183205.b.a.a	ENSGT00950000182839.B.b.b	ENSGT00390000001545	ENSGT00940000155653.b	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.b.a ##21	ENSGT00940000153201 #24	ENSGT00940000157462.C.c.b	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000161238.k	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00940000164715	ENSGT00390000007739	ENSGT00940000160745	ENSGT00950000182885.C.a	ENSGT00940000169159
Mangrove rivulus	MODERN SPECIES	68	lrrc4ca (ENSKMAG00000002507)	ehf (ENSKMAG00000002490)	ENSKMAG00000002304	pdhx (ENSKMAG00000002229)	ENSKMAG00000002208	slc1a2b (ENSKMAG00000002187)	PAMR1 (ENSKMAG00000002167)	FJX1 (ENSKMAG00000002155)	trim44 (ENSKMAG00000002131)	ldlrad3 (ENSKMAG00000002119)	ascl1b (ENSKMAG00000002102)	irf7 (ENSKMAG00000002052)	ENSKMAG00000002036	ENSKMAG00000002025	hrasb (ENSKMAG00000001922)	zgc:123278 (ENSKMAG00000001912) #21	tsg101a (ENSKMAG00000001851) ##21	ldha (ENSKMAG00000001800) #24	BRSK2 (ENSKMAG00000001715)	ABTB2 (ENSKMAG00000001552)	B4GALNT4 (ENSKMAG00000001525)
Turquoise killifish	MODERN SPECIES	1622	LRRC56 (ENSNFUG00015017716)	hrasb (ENSNFUG00015017722)	tsg101a (ENSNFUG00015017732) ##21	ldha (ENSNFUG00015017749) #24	BRSK2 (ENSNFUG00015017796)	ENSNFUG00015017926	ENSNFUG00015017930	ABTB2 (ENSNFUG00015017935)	B4GALNT4 (ENSNFUG00015017957)	ENSNFUG00015018036	ENSNFUG00015018039	SCARA3 (ENSNFUG00015018041)	ENSNFUG00015018046	TMEM86A (ENSNFUG00015018051) #17	SPTY2D1 (ENSNFUG00015018059)	UEVLD (ENSNFUG00015018066) #21	ENSNFUG00015018089	CPT1A (ENSNFUG00015018102)	Nfu_g_1_008143 (ENSNFUG00015018130)	mrpl23 (ENSNFUG00015018133)	ENSNFUG00015018140	IGF2B (ENSNFUG00015018144)	TH (ENSNFUG00015018175)	NAP1L4A (ENSNFUG00015018920)	PHLDA2 (ENSNFUG00015019031)	OSBPL5 (ENSNFUG00015019039)	PTPN5 (ENSNFUG00015019379) #16	DUSP8A (ENSNFUG00015019392)	MOB2A (ENSNFUG00015019393)	KCNJ11 (ENSNFUG00015019400)	abcc8 (ENSNFUG00015019713)
Osteoglossiformes	ANCESTRAL SPECIES	63							ENSGT00940000153201.h #24	ENSGT00940000157462.C.c.a.a	ENSGT00940000157661.e.a	ENSGT01050000244857.A.a.b.d	ENSGT00940000160123.f	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122.b	ENSGT00940000155653.b.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000161238.m	ENSGT00950000182885.C.a	ENSGT00390000007739	ENSGT00940000160745	ENSGT00940000164715	ENSGT01060000248595.b.a.b.a.n.a	ENSGT00390000006347.a	ENSGT00940000153362.b	ENSGT00440000039564.a.b.a	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916.d #16	ENSGT00940000160004	ENSGT01050000244956.a.a	ENSGT00990000203615.a.a.a.b
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	38	pdhx (ENSPKIG00000021977)	ENSPKIG00000022003	SLC1A2 (ENSPKIG00000000071)	PAMR1 (ENSPKIG00000000097)	FJX1 (ENSPKIG00000000110)	trim44 (ENSPKIG00000000119)	LDLRAD3 (ENSPKIG00000000134)	ascl1b (ENSPKIG00000000148)	irf7 (ENSPKIG00000000159)	ENSPKIG00000000183	ENSPKIG00000000215	RASSF7 (ENSPKIG00000000264)	LRRC56 (ENSPKIG00000000287)	HRAS (ENSPKIG00000000303)	ENSPKIG00000000316 #21	ENSPKIG00000000356 #21	LDHA (ENSPKIG00000000398) #24	BRSK2 (ENSPKIG00000000472)	ENSPKIG00000000563	ABTB2 (ENSPKIG00000000611)	B4GALNT4 (ENSPKIG00000000683)	IGSF22 (ENSPKIG00000000742)	tmem86a (ENSPKIG00000000765) #17	ENSPKIG00000000785	uevld (ENSPKIG00000000822) #21	ENSPKIG00000000893	th (ENSPKIG00000001023)	mrpl23 (ENSPKIG00000001102)	igf2b (ENSPKIG00000001127)	ENSPKIG00000001158	CPT1A (ENSPKIG00000001242)
P. kingsleyae	MODERN SPECIES	38	ehf (ENSPKIG00000021956)	pdhx (ENSPKIG00000021977)	ENSPKIG00000022003	SLC1A2 (ENSPKIG00000000071)	PAMR1 (ENSPKIG00000000097)	FJX1 (ENSPKIG00000000110)	trim44 (ENSPKIG00000000119)	LDLRAD3 (ENSPKIG00000000134)	ascl1b (ENSPKIG00000000148)	irf7 (ENSPKIG00000000159)	ENSPKIG00000000183	ENSPKIG00000000215	RASSF7 (ENSPKIG00000000264)	LRRC56 (ENSPKIG00000000287)	HRAS (ENSPKIG00000000303)	ENSPKIG00000000316 #21	ENSPKIG00000000356 #21	LDHA (ENSPKIG00000000398) #24	BRSK2 (ENSPKIG00000000472)	ENSPKIG00000000563	ABTB2 (ENSPKIG00000000611)	B4GALNT4 (ENSPKIG00000000683)	IGSF22 (ENSPKIG00000000742)	tmem86a (ENSPKIG00000000765) #17	ENSPKIG00000000785	uevld (ENSPKIG00000000822) #21	ENSPKIG00000000893	th (ENSPKIG00000001023)	mrpl23 (ENSPKIG00000001102)	igf2b (ENSPKIG00000001127)	ENSPKIG00000001158
P. kingsleyae	MODERN SPECIES	38	ENSPKIG00000000183	ENSPKIG00000000215	RASSF7 (ENSPKIG00000000264)	LRRC56 (ENSPKIG00000000287)	HRAS (ENSPKIG00000000303)	ENSPKIG00000000316 #21	ENSPKIG00000000356 #21	LDHA (ENSPKIG00000000398) #24	BRSK2 (ENSPKIG00000000472)	ENSPKIG00000000563	ABTB2 (ENSPKIG00000000611)	B4GALNT4 (ENSPKIG00000000683)	IGSF22 (ENSPKIG00000000742)	tmem86a (ENSPKIG00000000765) #17	ENSPKIG00000000785	uevld (ENSPKIG00000000822) #21	ENSPKIG00000000893	th (ENSPKIG00000001023)	mrpl23 (ENSPKIG00000001102)	igf2b (ENSPKIG00000001127)	ENSPKIG00000001158	CPT1A (ENSPKIG00000001242)	cars1 (ENSPKIG00000001391)	nap1l4b (ENSPKIG00000001515)	phlda2 (ENSPKIG00000001555)	OSBPL5 (ENSPKIG00000001623)	ENSPKIG00000001750	PTPN5 (ENSPKIG00000001814) #16	dusp8a (ENSPKIG00000001877)	MOB2 (ENSPKIG00000001948)	kcnj11 (ENSPKIG00000001997)
Sarcopterygii	ANCESTRAL SPECIES	61	ENSGT00940000162677	ENSGT00940000159302	ENSGT00940000158989	ENSGT00390000017397	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000161479 #23	ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT01000000215745
Tetrapoda	ANCESTRAL SPECIES	373															ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT01000000215745
Amniota	ANCESTRAL SPECIES	20	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00950000185387	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Aves	ANCESTRAL SPECIES	2	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Galloanserae	ANCESTRAL SPECIES	4	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Anatidae	ANCESTRAL SPECIES	9	ENSGT01030000238651	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818.z #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a.a	ENSGT00960000189946
Pink-footed goose	MODERN SPECIES	342													PTPN5 (ENSABRG00000018803) #16	TMEM86A (ENSABRG00000018851) #17	SPTY2D1 (ENSABRG00000018855) #18	UEVLD (ENSABRG00000018858) #21	TSG101 (ENSABRG00000018867) #22	LDHA (ENSABRG00000018899) #24	GTF2H1 (ENSABRG00000018911) #25	HPS5 (ENSABRG00000018923) #27	ENSABRG00000018930	SAAL1 (ENSABRG00000018937)	ENSABRG00000018950	ENSABRG00000018968
Neognathae_b	ANCESTRAL SPECIES	14	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Neognathae_c	ANCESTRAL SPECIES	17	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Kakapo	MODERN SPECIES	21	ENSSHBG00005003513	TSSC4 (ENSSHBG00005003525)	TRPM5 (ENSSHBG00005003544)	KCNQ1 (ENSSHBG00005003587)	ENSSHBG00005003643	SLC22A18 (ENSSHBG00005003653)	PHLDA2 (ENSSHBG00005003660)	NAP1L4 (ENSSHBG00005003673)	CARS1 (ENSSHBG00005003699)	ENSSHBG00005003742	OSBPL5 (ENSSHBG00005003762)	ENSSHBG00005003781	PTPN5 (ENSSHBG00005003830) #16	TMEM86A (ENSSHBG00005003850) #17	SPTY2D1 (ENSSHBG00005003868) #18	UEVLD (ENSSHBG00005003887) #21	TSG101 (ENSSHBG00005003912) #22	LDHA (ENSSHBG00005003929) #24	GTF2H1 (ENSSHBG00005003950) #25	HPS5 (ENSSHBG00005003984) #27	ENSSHBG00005004000	SAAL1 (ENSSHBG00005004015)	TPH1 (ENSSHBG00005004036)	SERGEF (ENSSHBG00005004045)	KCNC1 (ENSSHBG00005004052)	MYOD1 (ENSSHBG00005004057)	ENSSHBG00005004063	OTOG (ENSSHBG00005004083)	USH1C (ENSSHBG00005000692)	ABCC8 (ENSSHBG00005000788)	KCNJ11 (ENSSHBG00005000811)
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000153903.a.b.b #21
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066.t #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000158805.a	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066.t #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Medium ground finch	MODERN SPECIES	140	CD81 (ENSGFOG00000014391)	TSSC4 (ENSGFOG00000014390)	TRPM5 (ENSGFOG00000014382)	KCNQ1 (ENSGFOG00000014379)	SLC22A18 (ENSGFOG00000014376)	PHLDA2 (ENSGFOG00000014374)	NAP1L4 (ENSGFOG00000014365)	CARS1 (ENSGFOG00000014356)	ENSGFOG00000014350	OSBPL5 (ENSGFOG00000014344)	ENSGFOG00000014341	ENSGFOG00000014338	PTPN5 (ENSGFOG00000014334) #16	TMEM86A (ENSGFOG00000014331) #17	SPTY2D1 (ENSGFOG00000014327) #18	UEVLD (ENSGFOG00000014324) #21	ENSGFOG00000014319	TSG101 (ENSGFOG00000014316) #22	LDHA (ENSGFOG00000014313) #24	GTF2H1 (ENSGFOG00000014308) #25	HPS5 (ENSGFOG00000014302) #27	SAAL1 (ENSGFOG00000014301)	TPH1 (ENSGFOG00000014298)	SERGEF (ENSGFOG00000014296)
Lepidosauria	ANCESTRAL SPECIES	10	ENSGT00390000011846	ENSGT00940000160588	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000164956	ENSGT00940000164122	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162
Episquamata	ANCESTRAL SPECIES		ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00980000200162	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Laterata	ANCESTRAL SPECIES	2	ENSGT00940000161001	ENSGT00940000162677	ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00930000151070	ENSGT00500000044950	ENSGT00940000159535	ENSGT00940000156870	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00390000013383	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00920000149457	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Argentine black and white tegu	MODERN SPECIES	3	SLC22A18 (ENSSMRG00000014182)	ENSSMRG00000014183	ENSSMRG00000014184	NAP1L4 (ENSSMRG00000014185)	CARS1 (ENSSMRG00000014187)	ENSSMRG00000014188	PSMG1 (ENSSMRG00000014190)	OSBPL5 (ENSSMRG00000014191)	PTPRJ (ENSSMRG00000014192)	PTPN5 (ENSSMRG00000014194) #16	ENSSMRG00000014196	IGSF22 (ENSSMRG00000014197)	TMEM86A (ENSSMRG00000014198) #17	ENSSMRG00000014201	SPTY2D1 (ENSSMRG00000014202) #18	UEVLD (ENSSMRG00000014203) #21	TSG101 (ENSSMRG00000014204) #22	LDHA (ENSSMRG00000014205) #24	GTF2H1 (ENSSMRG00000014206) #25	HPS5 (ENSSMRG00000014207) #27	SAAL1 (ENSSMRG00000014475)	TPH1 (ENSSMRG00000014476)	SERGEF (ENSSMRG00000014477)	KCNC1 (ENSSMRG00000014480)	MYOD1 (ENSSMRG00000014495)	ENSSMRG00000014497	OTOG (ENSSMRG00000014503)	USH1C (ENSSMRG00000014516)	ABCC8 (ENSSMRG00000014918)	ENSSMRG00000014922	KCNJ11 (ENSSMRG00000014924)
Mammalia	ANCESTRAL SPECIES	9												ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Theria	ANCESTRAL SPECIES	8											ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT01050000245084	ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Atlantogenata	ANCESTRAL SPECIES	13	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Xenarthra	ANCESTRAL SPECIES	474															ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Armadillo	MODERN SPECIES	4729															ENSDNOG00000034564	UEVLD (ENSDNOG00000049358) #21	ENSDNOG00000043057	TSG101 (ENSDNOG00000004191) #22	ENSDNOG00000018915 #24	GTF2H1 (ENSDNOG00000008931) #25	HPS5 (ENSDNOG00000008878) #27	ENSDNOG00000037533	ENSDNOG00000042098	SAAL1 (ENSDNOG00000046307)	TPH1 (ENSDNOG00000037660)	SERGEF (ENSDNOG00000001225)
Sloth	MODERN SPECIES	4096																UEVLD (ENSCHOG00000007834) #21
Afrotheria	ANCESTRAL SPECIES	16	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Tenrec	MODERN SPECIES	7113																ENSETEG00000007522 #21	TSG101 (ENSETEG00000007520) #22	ENSETEG00000007517	ENSETEG00000007512 #23	LDHA (ENSETEG00000007508) #24
Afrotheria_a	ANCESTRAL SPECIES	17	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Elephant	MODERN SPECIES	209	NELL1 (ENSLAFG00000015587)	SLC6A5 (ENSLAFG00000015106)	PRMT3 (ENSLAFG00000018704)	HTATIP2 (ENSLAFG00000018703)	DBX1 (ENSLAFG00000007378)	NAV2 (ENSLAFG00000007364)	E2F8 (ENSLAFG00000022713)	CSRP3 (ENSLAFG00000018473)	ZDHHC13 (ENSLAFG00000014788)	ENSLAFG00000010977 #15	ENSLAFG00000032037 #15	PTPN5 (ENSLAFG00000013689) #16	IGSF22 (ENSLAFG00000031965)	TMEM86A (ENSLAFG00000002024) #17	SPTY2D1 (ENSLAFG00000003686) #18	UEVLD (ENSLAFG00000020671) #21	TSG101 (ENSLAFG00000003682) #22	LDHAL6B (ENSLAFG00000003680)	ENSLAFG00000011307 #24	GTF2H1 (ENSLAFG00000011296) #25	HPS5 (ENSLAFG00000011289) #27	ENSLAFG00000027166	ENSLAFG00000007862	SERGEF (ENSLAFG00000018367)	KCNC1 (ENSLAFG00000018355)	MYOD1 (ENSLAFG00000018353)	OTOG (ENSLAFG00000004882)	USH1C (ENSLAFG00000022470)	ABCC8 (ENSLAFG00000007014)	KCNJ11 (ENSLAFG00000031878)	NUCB2 (ENSLAFG00000007349)
Hyrax	MODERN SPECIES	5049																UEVLD (ENSPCAG00000010333) #21	TSG101 (ENSPCAG00000010234) #22	ENSPCAG00000010172
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Eulipotyphla	ANCESTRAL SPECIES	46															ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25
Hedgehog	MODERN SPECIES	4636																UEVLD (ENSEEUG00000005496) #21
Common shrew	MODERN SPECIES	832															SPTY2D1 (ENSSARG00000001287) #18	UEVLD (ENSSARG00000001266) #21	TSG101 (ENSSARG00000001249) #22	LDHC (ENSSARG00000001238) #23	LDHA (ENSSARG00000001224) #24	GTF2H1 (ENSSARG00000001210) #25	ENSSARG00000001190	HPS5 (ENSSARG00000001180) #27
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000017980.nb.b	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Dolphin	MODERN SPECIES	3409												PTPN5 (ENSTTRG00000013763) #16	IGSF22 (ENSTTRG00000013762)	TMEM86A (ENSTTRG00000013761) #17	ENSTTRG00000013760	UEVLD (ENSTTRG00000013759) #21	TSG101 (ENSTTRG00000013758) #22	LDHAL6A (ENSTTRG00000013757)	LDHA (ENSTTRG00000013756) #24	GTF2H1 (ENSTTRG00000013755) #25	HPS5 (ENSTTRG00000013754) #27
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00390000012981.rb.a.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00390000004147.d	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00390000012981.rb.a.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.m.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Narwhal	MODERN SPECIES	314	SLC6A5 (ENSMMNG00015016887)	PRMT3 (ENSMMNG00015016799)	HTATIP2 (ENSMMNG00015016730)	DBX1 (ENSMMNG00015016689)	ENSMMNG00015016644	NAV2 (ENSMMNG00015016103)	E2F8 (ENSMMNG00015015849)	CSRP3 (ENSMMNG00015015807)	ZDHHC13 (ENSMMNG00015021814)	PTPN5 (ENSMMNG00015021793) #16	IGSF22 (ENSMMNG00015021782)	TMEM86A (ENSMMNG00015021775) #17	SPTY2D1 (ENSMMNG00015021771) #18	MISFA (ENSMMNG00015021767)	ENSMMNG00015021762	UEVLD (ENSMMNG00015021744) #21	TSG101 (ENSMMNG00015021720) #22	ENSMMNG00015021710 #23	ENSMMNG00015021702 #24	ENSMMNG00015021700	ENSMMNG00015021692	GTF2H1 (ENSMMNG00015021680) #25	HPS5 (ENSMMNG00015021667) #27	ENSMMNG00015021655	ENSMMNG00015021651	ENSMMNG00015021647	SAAL1 (ENSMMNG00015021635)	TPH1 (ENSMMNG00015021621)	SERGEF (ENSMMNG00015021595)	KCNC1 (ENSMMNG00015021571)	MYOD1 (ENSMMNG00015021563)
Beluga whale	MODERN SPECIES	32	ENSDLEG00000014729	ENSDLEG00000014747	SLC6A5 (ENSDLEG00000014762)	PRMT3 (ENSDLEG00000014804)	HTATIP2 (ENSDLEG00000014829)	DBX1 (ENSDLEG00000014842)	NAV2 (ENSDLEG00000014897)	ENSDLEG00000015354	E2F8 (ENSDLEG00000015370)	CSRP3 (ENSDLEG00000015409)	ZDHHC13 (ENSDLEG00000015429)	PTPN5 (ENSDLEG00000015461) #16	TMEM86A (ENSDLEG00000015500) #17	ENSDLEG00000015507	MISFA (ENSDLEG00000015517)	UEVLD (ENSDLEG00000015524) #21	ENSDLEG00000015553	TSG101 (ENSDLEG00000015564) #22	ENSDLEG00000015577 #23	ENSDLEG00000015586 #24	GTF2H1 (ENSDLEG00000015605) #25	HPS5 (ENSDLEG00000015626) #27	ENSDLEG00000015657	SAAL1 (ENSDLEG00000015675)	TPH1 (ENSDLEG00000015701)	SERGEF (ENSDLEG00000015727)	KCNC1 (ENSDLEG00000015743)	MYOD1 (ENSDLEG00000015755)	OTOG (ENSDLEG00000015797)	USH1C (ENSDLEG00000016116)	ABCC8 (ENSDLEG00000016659)
Vaquita	MODERN SPECIES	19	PRMT3 (ENSPSNG00000015087)	HTATIP2 (ENSPSNG00000014906)	DBX1 (ENSPSNG00000014795)	ENSPSNG00000014727	ENSPSNG00000014664	NAV2 (ENSPSNG00000012172)	E2F8 (ENSPSNG00000011946)	CSRP3 (ENSPSNG00000011781)	ZDHHC13 (ENSPSNG00000011708)	PTPN5 (ENSPSNG00000011269) #16	IGSF22 (ENSPSNG00000011018)	TMEM86A (ENSPSNG00000010973) #17	SPTY2D1 (ENSPSNG00000010952) #18	MISFA (ENSPSNG00000010875)	ENSPSNG00000010762	UEVLD (ENSPSNG00000010589) #21	TSG101 (ENSPSNG00000010472) #22	ENSPSNG00000010416 #23	ENSPSNG00000010383 #24	ENSPSNG00000010281	GTF2H1 (ENSPSNG00000010188) #25	HPS5 (ENSPSNG00000009992) #27	ENSPSNG00000009837	ENSPSNG00000009755	ENSPSNG00000009709	ENSPSNG00000009625	ENSPSNG00000009564	SAAL1 (ENSPSNG00000009495)	TPH1 (ENSPSNG00000009426)	SERGEF (ENSPSNG00000009362)	KCNC1 (ENSPSNG00000009240)
Sperm whale	MODERN SPECIES	7	SLC6A5 (ENSPCTG00005008285)	PRMT3 (ENSPCTG00005008136)	HTATIP2 (ENSPCTG00005008097)	DBX1 (ENSPCTG00005008072)	ENSPCTG00005008063	E2F8 (ENSPCTG00005008024)	CSRP3 (ENSPCTG00005007959)	ZDHHC13 (ENSPCTG00005007891)	ENSPCTG00005007781 ##15	ENSPCTG00005007749	PTPN5 (ENSPCTG00005007677) #16	IGSF22 (ENSPCTG00005007611)	TMEM86A (ENSPCTG00005007580) #17	SPTY2D1 (ENSPCTG00005007559) #18	MISFA (ENSPCTG00005007534)	UEVLD (ENSPCTG00005007495) #21	TSG101 (ENSPCTG00005007406) #22	ENSPCTG00005007383	LDHC (ENSPCTG00005007321) #23	LDHA (ENSPCTG00005007271) #24	ENSPCTG00005007257	GTF2H1 (ENSPCTG00005007039) #25	HPS5 (ENSPCTG00005006903) #27	ENSPCTG00005006852	ENSPCTG00005006824	ENSPCTG00005006800	SAAL1 (ENSPCTG00005006752)	TPH1 (ENSPCTG00005006667)	SERGEF (ENSPCTG00005006546)	KCNC1 (ENSPCTG00005006503)	MYOD1 (ENSPCTG00005006484)
Blue whale	MODERN SPECIES	19	SLC6A5 (ENSBMSG00010010966)	PRMT3 (ENSBMSG00010010920)	HTATIP2 (ENSBMSG00010010875)	DBX1 (ENSBMSG00010010849)	ENSBMSG00010010837	NAV2 (ENSBMSG00010010470)	E2F8 (ENSBMSG00010010293)	CSRP3 (ENSBMSG00010010253)	ZDHHC13 (ENSBMSG00010010191)	ENSBMSG00010010155	PTPN5 (ENSBMSG00010010102) #16	IGSF22 (ENSBMSG00010010054)	TMEM86A (ENSBMSG00010010029) #17	ENSBMSG00010010018	MISFA (ENSBMSG00010010000)	UEVLD (ENSBMSG00010009936) #21	ENSBMSG00010009877 #22	ENSBMSG00010009854	LDHC (ENSBMSG00010009652) #23	ENSBMSG00010009579 #24	GTF2H1 (ENSBMSG00010009536) #25	HPS5 (ENSBMSG00010009507) #27	ENSBMSG00010009483	ENSBMSG00010009474	ENSBMSG00010009467	SAAL1 (ENSBMSG00010012874)	TPH1 (ENSBMSG00010012841)	ENSBMSG00010012824	SERGEF (ENSBMSG00010012809)	KCNC1 (ENSBMSG00010012786)	MYOD1 (ENSBMSG00010012778)
Pecora	ANCESTRAL SPECIES	13	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT01010000222320.a.a.a.b.h.b.b.a.a.b.b	ENSGT01010000222320.a.a.a.a.a	ENSGT01010000222320.a.b.a.a	ENSGT01010000222320.a.b.b	ENSGT01010000222320.a.a.b.a.c	ENSGT01010000222320.a.a.b.a.d.b.b	ENSGT01010000222320.a.a.b.a.d.b.a	ENSGT01040000240383.a.b.g.b
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT01100000266516	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.a	ENSGT00390000004737.b.a.o.a.a.a.a.o	ENSGT00390000004737.b.a.o.a.b	ENSGT01010000222320.a.a.a.b.h.b.b.a.b	ENSGT01050000244869.a.a.b	ENSGT01050000244869.a.a.a.a	ENSGT01050000244869.b.qb.b	ENSGT01050000244869.a.a.a.b.a.a.b.b	ENSGT01050000244869.a.a.a.b.a.a.b.a.d
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT01100000266516	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.o	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057	ENSGT01090000260086.A.c.a.a
Bovinae	ANCESTRAL SPECIES	27	ENSGT00810000125439.A.qc.a	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.a.b.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.a	ENSGT00390000004737.b.a.o.a.b	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b	ENSGT00940000163057
Bos	ANCESTRAL SPECIES	11	ENSGT00810000125439.A.qc.a	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.d	ENSGT00390000004737.b.a.o.a.a.a.a.o.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.c	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b
Bos_b	ANCESTRAL SPECIES	10	ENSGT00810000125439.A.qc.a	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248204	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.d	ENSGT00390000004737.b.a.o.a.a.a.a.o.b	ENSGT00390000004737.b.a.o.a.a.a.a.o.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.c	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b
Hybrid Bos Indicus	MODERN SPECIES	21	PRMT3 (ENSBIXG00005022211)	ENSBIXG00005022254	HTATIP2 (ENSBIXG00005022339)	DBX1 (ENSBIXG00005022387)	ENSBIXG00005022396	ENSBIXG00005007225	NAV2 (ENSBIXG00005023131)	E2F8 (ENSBIXG00005023306)	CSRP3 (ENSBIXG00005023367)	ZDHHC13 (ENSBIXG00005023459)	ENSBIXG00005023495 ##15	PTPN5 (ENSBIXG00005023528) #16	TMEM86A (ENSBIXG00005004037) #17	SPTY2D1 (ENSBIXG00005023655) #18	ENSBIXG00005023672	UEVLD (ENSBIXG00005007235) #21	ENSBIXG00005007624 #22	LDHC (ENSBIXG00005023917) #23	ENSBIXG00005024064 #24	GTF2H1 (ENSBIXG00005004134) #25	HPS5 (ENSBIXG00005024315) #27	ENSBIXG00005004162	ENSBIXG00005024453	ENSBIXG00005004178	ENSBIXG00005024490	ENSBIXG00005004182	ENSBIXG00005024511	OR8D4 (ENSBIXG00005024533)	ENSBIXG00005024579	OR10S1 (ENSBIXG00005024588)	OR10G6 (ENSBIXG00005024593)
Cow	MODERN SPECIES	21	ENSBTAG00000050228	ENSBTAG00000048576	SLC6A5 (ENSBTAG00000014300)	PRMT3 (ENSBTAG00000013421)	HTATIP2 (ENSBTAG00000013419)	ENSBTAG00000008684	DBX1 (ENSBTAG00000002733)	NAV2 (ENSBTAG00000018431)	E2F8 (ENSBTAG00000017446)	CSRP3 (ENSBTAG00000011869)	ZDHHC13 (ENSBTAG00000020642)	MRGPRX2 (ENSBTAG00000002245) ##15	PTPN5 (ENSBTAG00000020257) #16	TMEM86A (ENSBTAG00000048059) #17	SPTY2D1 (ENSBTAG00000001660) #18	UEVLD (ENSBTAG00000013568) #21	TSG101 (ENSBTAG00000013563) #22	LDHC (ENSBTAG00000002488) #23	LDHA (ENSBTAG00000008683) #24	GTF2H1 (ENSBTAG00000005160) #25	HPS5 (ENSBTAG00000005147) #27	SAA3 (ENSBTAG00000049589)	ENSBTAG00000022395	SAA2 (ENSBTAG00000022394)	SAA4 (ENSBTAG00000002963)	M-SAA3.2 (ENSBTAG00000054278)	OR6M2 (ENSBTAG00000040020)	OR6M2C (ENSBTAG00000052437)	OR6M7 (ENSBTAG00000037485)	OR8D4 (ENSBTAG00000038802)	OR4D5 (ENSBTAG00000006634)
Bos_a	ANCESTRAL SPECIES	106								ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000266516	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u.i.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27
Wild yak	MODERN SPECIES	1200								E2F8 (ENSBMUG00000021434)	CSRP3 (ENSBMUG00000021458)	ZDHHC13 (ENSBMUG00000021491)	ENSBMUG00000021522 ##15	PTPN5 (ENSBMUG00000021545) #16	TMEM86A (ENSBMUG00000021555) #17	SPTY2D1 (ENSBMUG00000021567) #18	ENSBMUG00000021575	UEVLD (ENSBMUG00000021628) #21	TSG101 (ENSBMUG00000021667) #22	ENSBMUG00000021687 #23	ENSBMUG00000021774 #24	GTF2H1 (ENSBMUG00000021811) #25	HPS5 (ENSBMUG00000021851) #27	ENSBMUG00000021888
American bison	MODERN SPECIES	3302	PRMT3 (ENSBBBG00000013466)	HTATIP2 (ENSBBBG00000013427)	ENSBBBG00000013401	DBX1 (ENSBBBG00000013393)	NAV2 (ENSBBBG00000001584)	ENSBBBG00000001687	E2F8 (ENSBBBG00000013084)	CSRP3 (ENSBBBG00000013070)	ZDHHC13 (ENSBBBG00000013052)	ENSBBBG00000013032 ##15	PTPN5 (ENSBBBG00000013029) #16	TMEM86A (ENSBBBG00000002600) #17	SPTY2D1 (ENSBBBG00000013009) #18	ENSBBBG00000012981	MISFA (ENSBBBG00000012977)	UEVLD (ENSBBBG00000012967) #21	ENSBBBG00000002528 #22	LDHC (ENSBBBG00000012846) #23	ENSBBBG00000001786 #24	GTF2H1 (ENSBBBG00000002487) #25	HPS5 (ENSBBBG00000007648) #27	ENSBBBG00000012737	ENSBBBG00000012698	ENSBBBG00000012686	SAA4 (ENSBBBG00000002439)	ENSBBBG00000012666	ENSBBBG00000012663	OR8D4 (ENSBBBG00000002436)	OR4D5 (ENSBBBG00000012653)	OR10S1 (ENSBBBG00000002433)	OR10G6 (ENSBBBG00000002432)
Caprinae	ANCESTRAL SPECIES	29	ENSGT00940000156825	ENSGT00390000008184	ENSGT00390000016292.i.b	ENSGT00940000163089.b.x.b.b	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000266516	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a.k.b #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.u #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.e	ENSGT00390000004737.b.a.o.a.a.a.a.p.a	ENSGT00390000004737.b.a.o.a.a.a.a.o	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.a.p.b.f	ENSGT01090000260086.B.a.a.c.a.a	ENSGT01090000260086.B.a.a.c.a.b	ENSGT01090000260086.B.a.a.d	ENSGT01090000260086.B.a.b	ENSGT01040000240383.b.a.b
Rambouillet Sheep	MODERN SPECIES	13	ENSOARG00020025672	ENSOARG00020025676	ENSOARG00020025682	DBX1 (ENSOARG00020025685)	NAV2 (ENSOARG00020025736)	E2F8 (ENSOARG00020025926)	ENSOARG00020025934	CSRP3 (ENSOARG00020025944)	ZDHHC13 (ENSOARG00020025951)	ENSOARG00020025964 ##15	PTPN5 (ENSOARG00020025965) #16	TMEM86A (ENSOARG00020025974) #17	SPTY2D1 (ENSOARG00020025977) #18	ENSOARG00020025980	ENSOARG00020025982	UEVLD (ENSOARG00020026000) #21	ENSOARG00020026044	TSG101 (ENSOARG00020026047) #22	ENSOARG00020026053 #23	LDHA (ENSOARG00020026056) #24	GTF2H1 (ENSOARG00020026060) #25	HPS5 (ENSOARG00020026065) #27	ENSOARG00020026068	ENSOARG00020026070	ENSOARG00020026073	ENSOARG00020026078	ENSOARG00020026082	ENSOARG00020026085	ENSOARG00020026088	ENSOARG00020026089	ENSOARG00020012600
Siberian musk deer	MODERN SPECIES	1224	PRMT3 (ENSMMSG00000022878)	HTATIP2 (ENSMMSG00000022848)	ENSMMSG00000022836	DBX1 (ENSMMSG00000022828)	NAV2 (ENSMMSG00000022421)	ENSMMSG00000022344	E2F8 (ENSMMSG00000022333)	CSRP3 (ENSMMSG00000022318)	ZDHHC13 (ENSMMSG00000022294)	ENSMMSG00000022286 ##15	PTPN5 (ENSMMSG00000022223) #16	TMEM86A (ENSMMSG00000022196) #17	SPTY2D1 (ENSMMSG00000022187) #18	ENSMMSG00000022175	MISFA (ENSMMSG00000022162)	UEVLD (ENSMMSG00000022084) #21	ENSMMSG00000022013 #22	LDHC (ENSMMSG00000021972) #23	LDHA (ENSMMSG00000021827) #24	GTF2H1 (ENSMMSG00000021771) #25	HPS5 (ENSMMSG00000021689) #27	ENSMMSG00000021661	ENSMMSG00000021636	ENSMMSG00000021614	SAA4 (ENSMMSG00000021593)	ENSMMSG00000021585	ENSMMSG00000021574	ENSMMSG00000021570	ENSMMSG00000021557	ENSMMSG00000021549	ENSMMSG00000021489
Yarkand deer	MODERN SPECIES	11	NELL1 (ENSCHYG00000010475)	SLC6A5 (ENSCHYG00000010711)	PRMT3 (ENSCHYG00000010820)	ENSCHYG00000011190	ENSCHYG00000011455	DBX1 (ENSCHYG00000011489)	NAV2 (ENSCHYG00000011779)	E2F8 (ENSCHYG00000016190)	CSRP3 (ENSCHYG00000016300)	ZDHHC13 (ENSCHYG00000016429)	ENSCHYG00000016803 ##15	PTPN5 (ENSCHYG00000016835) #16	TMEM86A (ENSCHYG00000017014) #17	SPTY2D1 (ENSCHYG00000017059) #18	MISFA (ENSCHYG00000017128)	UEVLD (ENSCHYG00000017172) #21	ENSCHYG00000017450	ENSCHYG00000017501 #22	LDHC (ENSCHYG00000018080) #23	ENSCHYG00000018608 #24	GTF2H1 (ENSCHYG00000019337) #25	HPS5 (ENSCHYG00000019515) #27	ENSCHYG00000020233	SAA4 (ENSCHYG00000020291)	ENSCHYG00000020339	ENSCHYG00000020374	ENSCHYG00000020410	ENSCHYG00000020435	OR4D5 (ENSCHYG00000020491)	ENSCHYG00000020518	OR10S1 (ENSCHYG00000020561)
Camelidae	ANCESTRAL SPECIES	25	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00990000212997	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Arabian camel	MODERN SPECIES	1	NELL1 (ENSCDRG00005008592)	SLC6A5 (ENSCDRG00005009100)	PRMT3 (ENSCDRG00005009301)	HTATIP2 (ENSCDRG00005009706)	DBX1 (ENSCDRG00005009814)	NAV2 (ENSCDRG00005009941)	ENSCDRG00005010656	E2F8 (ENSCDRG00005010690)	CSRP3 (ENSCDRG00005010820)	ZDHHC13 (ENSCDRG00005010952)	ENSCDRG00005011022 ##15	PTPN5 (ENSCDRG00005011174) #16	TMEM86A (ENSCDRG00005011463) #17	SPTY2D1 (ENSCDRG00005011497) #18	ENSCDRG00005011524	UEVLD (ENSCDRG00005011579) #21	TSG101 (ENSCDRG00005011857) #22	LDHC (ENSCDRG00005012071) #23	ENSCDRG00005013169 #24	ENSCDRG00005013197	GTF2H1 (ENSCDRG00005013223) #25	HPS5 (ENSCDRG00005013369) #27	ENSCDRG00005013545	ENSCDRG00005013613	SAAL1 (ENSCDRG00005013646)	TPH1 (ENSCDRG00005013726)	SERGEF (ENSCDRG00005013823)	KCNC1 (ENSCDRG00005013940)	MYOD1 (ENSCDRG00005014006)	OTOG (ENSCDRG00005014084)	USH1C (ENSCDRG00005014521)
Alpaca	MODERN SPECIES	296														TMEM86A (ENSVPAG00000010221) #17	SPTY2D1 (ENSVPAG00000010220) #18	UEVLD (ENSVPAG00000010219) #21	TSG101 (ENSVPAG00000010218) #22	LDHAL6A (ENSVPAG00000010217)	LDHC (ENSVPAG00000010216) #23	LDHA (ENSVPAG00000010215) #24	GTF2H1 (ENSVPAG00000010213) #25	HPS5 (ENSVPAG00000010212) #27	ENSVPAG00000010210	SAAL1 (ENSVPAG00000010209)	TPH1 (ENSVPAG00000010206)	SERGEF (ENSVPAG00000010204)
Suina	ANCESTRAL SPECIES	34	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Chacoan peccary	MODERN SPECIES	919	NELL1 (ENSCWAG00000007122)	SLC6A5 (ENSCWAG00000007819)	PRMT3 (ENSCWAG00000007978)	HTATIP2 (ENSCWAG00000008210)	DBX1 (ENSCWAG00000008345)	NAV2 (ENSCWAG00000008613)	E2F8 (ENSCWAG00000013295)	CSRP3 (ENSCWAG00000013430)	ZDHHC13 (ENSCWAG00000013556)	ENSCWAG00000013674 ##15	PTPN5 (ENSCWAG00000013752) #16	IGSF22 (ENSCWAG00000014237)	TMEM86A (ENSCWAG00000014433) #17	SPTY2D1 (ENSCWAG00000014459) #18	ENSCWAG00000014496	ENSCWAG00000014527 #21	TSG101 (ENSCWAG00000014545) #22	LDHC (ENSCWAG00000014623) #23	ENSCWAG00000015128	ENSCWAG00000015145 #24	ENSCWAG00000015174	GTF2H1 (ENSCWAG00000015209) #25	HPS5 (ENSCWAG00000015353) #27	SAA4 (ENSCWAG00000015410)	ENSCWAG00000015451	SAAL1 (ENSCWAG00000015499)	TPH1 (ENSCWAG00000015561)	SERGEF (ENSCWAG00000015651)	KCNC1 (ENSCWAG00000015694)	MYOD1 (ENSCWAG00000015755)	OTOG (ENSCWAG00000015797)
Pig	MODERN SPECIES	10	NELL1 (ENSSSCG00000039940)	SLC6A5 (ENSSSCG00000037705)	PRMT3 (ENSSSCG00000013347)	HTATIP2 (ENSSSCG00000013349)	DBX1 (ENSSSCG00000013350)	NAV2 (ENSSSCG00000013351)	E2F8 (ENSSSCG00000013352)	CSRP3 (ENSSSCG00000013354)	ZDHHC13 (ENSSSCG00000021688)	ENSSSCG00000032047	ENSSSCG00000060771 ##15	PTPN5 (ENSSSCG00000013358) #16	TMEM86A (ENSSSCG00000013360) #17	SPTY2D1 (ENSSSCG00000013361) #18	MISFA (ENSSSCG00000038037)	UEVLD (ENSSSCG00000013362) #21	ENSSSCG00000041063	LDHC (ENSSSCG00000013363) #23	LDHA (ENSSSCG00000013366) #24	GTF2H1 (ENSSSCG00000013367) #25	ENSSSCG00000045256	ENSSSCG00000013369	ENSSSCG00000052907	ENSSSCG00000046269	ENSSSCG00000037358	SAAL1 (ENSSSCG00000035393)	TPH1 (ENSSSCG00000054840)	SERGEF (ENSSSCG00000042767)	KCNC1 (ENSSSCG00000013374)	MYOD1 (ENSSSCG00000013375)	OTOG (ENSSSCG00000013376)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Carnivora	ANCESTRAL SPECIES	7	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00940000153201.j.n #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Felidae	ANCESTRAL SPECIES		ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684.g	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Panthera	ANCESTRAL SPECIES	13	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684.g	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Panthera_a	ANCESTRAL SPECIES	20	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.b #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.l	ENSGT00390000004737.b.a.o.a.a.a.a.g	ENSGT00390000004737.b.a.o.a.a.a.a.h	ENSGT00390000004737.b.a.o.a.a.a.b.k	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684.g	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
leopard	MODERN SPECIES	29	ENSPPRG00000022562	NELL1 (ENSPPRG00000000327)	SLC6A5 (ENSPPRG00000000873)	PRMT3 (ENSPPRG00000001326)	HTATIP2 (ENSPPRG00000002560)	DBX1 (ENSPPRG00000002780)	NAV2 (ENSPPRG00000013270)	E2F8 (ENSPPRG00000014115)	ENSPPRG00000015668	ZDHHC13 (ENSPPRG00000020544)	PTPN5 (ENSPPRG00000000183) #16	IGSF22 (ENSPPRG00000000851)	TMEM86A (ENSPPRG00000001090) #17	SPTY2D1 (ENSPPRG00000001541) #18	ENSPPRG00000001886	UEVLD (ENSPPRG00000003736) #21	TSG101 (ENSPPRG00000004620) #22	ENSPPRG00000006170	ENSPPRG00000008586	LDHC (ENSPPRG00000010475) #23	ENSPPRG00000014382 #24	GTF2H1 (ENSPPRG00000020251) #25	HPS5 (ENSPPRG00000022226) #27	ENSPPRG00000024363	ENSPPRG00000024065	ENSPPRG00000023577	ENSPPRG00000000993	SAAL1 (ENSPPRG00000001488)	TPH1 (ENSPPRG00000001846)	SERGEF (ENSPPRG00000003386)	KCNC1 (ENSPPRG00000003611)
lion	MODERN SPECIES	10	HTATIP2 (ENSPLOG00000019869)	DBX1 (ENSPLOG00000019812)	ENSPLOG00000019783	ENSPLOG00000019733	NAV2 (ENSPLOG00000017874)	E2F8 (ENSPLOG00000017576)	CSRP3 (ENSPLOG00000017516)	ZDHHC13 (ENSPLOG00000017457)	ENSPLOG00000017425 ##15	PTPN5 (ENSPLOG00000017060) #16	IGSF22 (ENSPLOG00000016855)	TMEM86A (ENSPLOG00000016800) #17	SPTY2D1 (ENSPLOG00000016758) #18	ENSPLOG00000016726	MISFA (ENSPLOG00000016698)	UEVLD (ENSPLOG00000016574) #21	TSG101 (ENSPLOG00000016477) #22	LDHC (ENSPLOG00000016357) #23	ENSPLOG00000016282 #24	GTF2H1 (ENSPLOG00000016181) #25	HPS5 (ENSPLOG00000016112) #27	ENSPLOG00000016063	ENSPLOG00000016007	SAAL1 (ENSPLOG00000015945)	TPH1 (ENSPLOG00000015838)	SERGEF (ENSPLOG00000015624)	KCNC1 (ENSPLOG00000015532)	MYOD1 (ENSPLOG00000015478)	OTOG (ENSPLOG00000014950)	USH1C (ENSPLOG00000014009)	ABCC8 (ENSPLOG00000011679)
Tiger	MODERN SPECIES	586	NELL1 (ENSPTIG00000021075)	SLC6A5 (ENSPTIG00000019076)	PRMT3 (ENSPTIG00000016281)	HTATIP2 (ENSPTIG00000013551)	DBX1 (ENSPTIG00000012810)	NAV2 (ENSPTIG00000012689)	E2F8 (ENSPTIG00000011789)	CSRP3 (ENSPTIG00000011374)	ZDHHC13 (ENSPTIG00000007499)	ENSPTIG00000007006 ##15	PTPN5 (ENSPTIG00000020942) #16	IGSF22 (ENSPTIG00000020496)	TMEM86A (ENSPTIG00000020012) #17	SPTY2D1 (ENSPTIG00000019614) #18	ENSPTIG00000019097	UEVLD (ENSPTIG00000013958) #21	TSG101 (ENSPTIG00000011586) #22	ENSPTIG00000011335	LDHC (ENSPTIG00000007918) #23	LDHA (ENSPTIG00000016734) #24	GTF2H1 (ENSPTIG00000015340) #25	HPS5 (ENSPTIG00000010507) #27	ENSPTIG00000010049	ENSPTIG00000008520	ENSPTIG00000005766	ENSPTIG00000005385	SAAL1 (ENSPTIG00000020213)	TPH1 (ENSPTIG00000019857)	SERGEF (ENSPTIG00000016255)	KCNC1 (ENSPTIG00000014448)	ENSPTIG00000013033
Cat	MODERN SPECIES	241	PRMT3 (ENSFCAG00000031309)	HTATIP2 (ENSFCAG00000030053)	DBX1 (ENSFCAG00000028654)	NAV2 (ENSFCAG00000001793)	ENSFCAG00000022292	E2F8 (ENSFCAG00000010706)	CSRP3 (ENSFCAG00000010704)	ZDHHC13 (ENSFCAG00000010703)	ENSFCAG00000010700 ##15	PTPN5 (ENSFCAG00000002890) #16	IGSF22 (ENSFCAG00000043784)	TMEM86A (ENSFCAG00000015745) #17	SPTY2D1 (ENSFCAG00000015743) #18	ENSFCAG00000048198	MISFA (ENSFCAG00000035445)	UEVLD (ENSFCAG00000015742) #21	TSG101 (ENSFCAG00000028742) #22	LDHC (ENSFCAG00000034264) #23	LDHA (ENSFCAG00000015735) #24	GTF2H1 (ENSFCAG00000007117) #25	HPS5 (ENSFCAG00000011158) #27	ENSFCAG00000042268	ENSFCAG00000046392	SAAL1 (ENSFCAG00000000210)	TPH1 (ENSFCAG00000025053)	SERGEF (ENSFCAG00000000209)	KCNC1 (ENSFCAG00000004974)	MYOD1 (ENSFCAG00000004973)	OTOG (ENSFCAG00000004972)	USH1C (ENSFCAG00000004971)	ABCC8 (ENSFCAG00000004967)
Caniformia	ANCESTRAL SPECIES	25	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.n #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000156986	ENSGT00410000029064	ENSGT00390000011749	ENSGT00940000159617	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.n.j #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a.f #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00390000015930.ab	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.n.j #24	ENSGT01030000235549	ENSGT00940000153201.j.m.a.f #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b.n.a	ENSGT00390000004737.b.a.o.a.a.a.a.c	ENSGT00390000004737.b.a.o.a.a.a.b.m	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Dingo	MODERN SPECIES	231	NELL1 (ENSCAFG00020019396)	SLC6A5 (ENSCAFG00020019350)	PRMT3 (ENSCAFG00020019297)	HTATIP2 (ENSCAFG00020019284)	DBX1 (ENSCAFG00020019280)	NAV2 (ENSCAFG00020019081)	ENSCAFG00020019024	E2F8 (ENSCAFG00020019000)	CSRP3 (ENSCAFG00020018980)	ZDHHC13 (ENSCAFG00020018891)	ENSCAFG00020018860 ##15	PTPN5 (ENSCAFG00020018854) #16	TMEM86A (ENSCAFG00020018853) #17	SPTY2D1 (ENSCAFG00020018850) #18	MISFA (ENSCAFG00020018848)	UEVLD (ENSCAFG00020018838) #21	ENSCAFG00020018792 #22	ENSCAFG00020018780	LDHC (ENSCAFG00020018722) #23	ENSCAFG00020018694 #24	GTF2H1 (ENSCAFG00020018689) #25	HPS5 (ENSCAFG00020018444) #27	ENSCAFG00020018420	ENSCAFG00020018417	ENSCAFG00020018412	ENSCAFG00020018410	ENSCAFG00020018409	SAAL1 (ENSCAFG00020018406)	TPH1 (ENSCAFG00020018391)	SERGEF (ENSCAFG00020018379)	KCNC1 (ENSCAFG00020018373)
Dog	MODERN SPECIES	13	HTATIP2 (ENSCAFG00845021311)	DBX1 (ENSCAFG00845021224)	ENSCAFG00845021177	ENSCAFG00845021130	NAV2 (ENSCAFG00845019323)	E2F8 (ENSCAFG00845018868)	CSRP3 (ENSCAFG00845018814)	ZDHHC13 (ENSCAFG00845018721)	MRGPRX (ENSCAFG00845018660) ##15	IGSF22 (ENSCAFG00845018417)	TMEM86A (ENSCAFG00845018325) #17	SPTY2D1 (ENSCAFG00845018254) #18	ENSCAFG00845018219	MISFA (ENSCAFG00845018190)	ENSCAFG00845017589 #16	UEVLD (ENSCAFG00845017016) #21	TSG101 (ENSCAFG00845016679) #22	LDHC (ENSCAFG00845016401) #23	ENSCAFG00845016146 #24	ENSCAFG00845016105	GTF2H1 (ENSCAFG00845016048) #25	HPS5 (ENSCAFG00845015814) #27	ENSCAFG00845015612	SAA1 (ENSCAFG00845015494)	ENSCAFG00845015397	SAAL1 (ENSCAFG00845015248)	TPH1 (ENSCAFG00845015143)	SERGEF (ENSCAFG00845015032)	KCNC1 (ENSCAFG00845014972)	MYOD1 (ENSCAFG00845014938)	OTOG (ENSCAFG00845014610)
Red fox	MODERN SPECIES	266					ENSVVUG00000001719	ENSVVUG00000001736	E2F8 (ENSVVUG00000001762)	CSRP3 (ENSVVUG00000001781)	ZDHHC13 (ENSVVUG00000001822)	ENSVVUG00000002374 ##15	PTPN5 (ENSVVUG00000002423) #16	IGSF22 (ENSVVUG00000002474)	TMEM86A (ENSVVUG00000002500) #17	SPTY2D1 (ENSVVUG00000002505) #18	ENSVVUG00000002512	UEVLD (ENSVVUG00000002533) #21	TSG101 (ENSVVUG00000002567) #22	ENSVVUG00000002657	LDHC (ENSVVUG00000002685) #23	ENSVVUG00000002716	ENSVVUG00000002728 #24	GTF2H1 (ENSVVUG00000002738) #25	HPS5 (ENSVVUG00000002771) #27	ENSVVUG00000004133
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Mustelinae	ANCESTRAL SPECIES	30	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479.e #23	ENSGT00940000153201.j.n #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Ferret	MODERN SPECIES	194	NELL1 (ENSMPUG00000013935)	SLC6A5 (ENSMPUG00000013929)	PRMT3 (ENSMPUG00000013923)	HTATIP2 (ENSMPUG00000013921)	ENSMPUG00000013918	DBX1 (ENSMPUG00000013914)	NAV2 (ENSMPUG00000013905)	E2F8 (ENSMPUG00000013899)	CSRP3 (ENSMPUG00000013898)	ZDHHC13 (ENSMPUG00000013842)	ENSMPUG00000019449 ##15	PTPN5 (ENSMPUG00000013839) #16	IGSF22 (ENSMPUG00000013835)	TMEM86A (ENSMPUG00000013825) #17	SPTY2D1 (ENSMPUG00000013816) #18	UEVLD (ENSMPUG00000013774) #21	TSG101 (ENSMPUG00000013769) #22	ENSMPUG00000013766 #23	ENSMPUG00000013730 #24	GTF2H1 (ENSMPUG00000013729) #25	HPS5 (ENSMPUG00000013726) #27	ENSMPUG00000013724	ENSMPUG00000013721	SAAL1 (ENSMPUG00000013717)	TPH1 (ENSMPUG00000013571)	SERGEF (ENSMPUG00000013567)	KCNC1 (ENSMPUG00000013565)	MYOD1 (ENSMPUG00000013563)	OTOG (ENSMPUG00000013475)	USH1C (ENSMPUG00000013383)	ABCC8 (ENSMPUG00000013368)
American mink	MODERN SPECIES	13	PRMT3 (ENSNVIG00000017502)	HTATIP2 (ENSNVIG00000017546)	DBX1 (ENSNVIG00000017634)	NAV2 (ENSNVIG00000017681)	ENSNVIG00000018341	E2F8 (ENSNVIG00000018359)	CSRP3 (ENSNVIG00000018395)	ZDHHC13 (ENSNVIG00000018438)	ENSNVIG00000018465 ##15	PTPN5 (ENSNVIG00000018475) #16	IGSF22 (ENSNVIG00000018521)	TM86A (ENSNVIG00000018560) #17	SPTY2D1 (ENSNVIG00000018574) #18	ENSNVIG00000018581	MISFA (ENSNVIG00000018586)	UEVLD (ENSNVIG00000018596) #21	ENSNVIG00000018751 #22	LDHC (ENSNVIG00000018779) #23	ENSNVIG00000018827	TF2H1 (ENSNVIG00000018843) #25	HPS5 (ENSNVIG00000018867) #27	ENSNVIG00000018923	ENSNVIG00000018941	ENSNVIG00000018957	SAAL1 (ENSNVIG00000018995)	TPH1 (ENSNVIG00000019049)	SERGEF (ENSNVIG00000019122)	KCNC1 (ENSNVIG00000019159)	MYOD1 (ENSNVIG00000019177)	OTOG (ENSNVIG00000019193)	USH1C (ENSNVIG00000019256)
Ursidae	ANCESTRAL SPECIES	2	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000247925	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Giant Panda	MODERN SPECIES	7	PRMT3 (ENSAMEG00000004679)	HTATIP2 (ENSAMEG00000004668)	DBX1 (ENSAMEG00000004660)	ENSAMEG00000029262	NAV2 (ENSAMEG00000004597)	E2F8 (ENSAMEG00000017950)	CSRP3 (ENSAMEG00000017946)	ZDHHC13 (ENSAMEG00000017928)	ENSAMEG00000019312 ##15	PTPN5 (ENSAMEG00000017915) #16	IGSF22 (ENSAMEG00000017913)	TMEM86A (ENSAMEG00000017911) #17	SPTY2D1 (ENSAMEG00000017906) #18	ENSAMEG00000028723	MISFA (ENSAMEG00000017904)	UEVLD (ENSAMEG00000017885) #21	TSG101 (ENSAMEG00000017874) #22	LDHC (ENSAMEG00000017872) #23	ENSAMEG00000017854 #24	GTF2H1 (ENSAMEG00000017836) #25	HPS5 (ENSAMEG00000017819) #27	ENSAMEG00000023602	ENSAMEG00000024218	SAAL1 (ENSAMEG00000018204)	TPH1 (ENSAMEG00000018200)	SERGEF (ENSAMEG00000028965)	KCNC1 (ENSAMEG00000018198)	MYOD1 (ENSAMEG00000018197)	OTOG (ENSAMEG00000003146)	USH1C (ENSAMEG00000003181)	ABCC8 (ENSAMEG00000003026)
Ursus	ANCESTRAL SPECIES	69	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.m.a #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a
American black bear	MODERN SPECIES	1429														SPTY2D1 (ENSUAMG00000019113) #18	MISFA (ENSUAMG00000019114)	ENSUAMG00000019115 #21	ENSUAMG00000019116	TSG101 (ENSUAMG00000019117) #22	ENSUAMG00000019118 #23	ENSUAMG00000019119 #23	LDHA (ENSUAMG00000019120) #24	GTF2H1 (ENSUAMG00000019123) #25	HPS5 (ENSUAMG00000019163) #27
Polar bear	MODERN SPECIES	141	NELL1 (ENSUMAG00000019939)	SLC6A5 (ENSUMAG00000019945)	PRMT3 (ENSUMAG00000020026)	HTATIP2 (ENSUMAG00000020143)	DBX1 (ENSUMAG00000020160)	NAV2 (ENSUMAG00000020189)	ENSUMAG00000020361	E2F8 (ENSUMAG00000020364)	CSRP3 (ENSUMAG00000020368)	ZDHHC13 (ENSUMAG00000020381)	ENSUMAG00000020470 ##15	PTPN5 (ENSUMAG00000020473) #16	TMEM86A (ENSUMAG00000020480) #17	SPTY2D1 (ENSUMAG00000020482) #18	MISFA (ENSUMAG00000020486)	UEVLD (ENSUMAG00000020491) #21	TSG101 (ENSUMAG00000020496) #22	ENSUMAG00000020503 #23	ENSUMAG00000020508 #23	LDHA (ENSUMAG00000020515) #24	GTF2H1 (ENSUMAG00000020519) #25	ENSUMAG00000020540 #27	ENSUMAG00000020566 #27	ENSUMAG00000020602	ENSUMAG00000020619
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Equus	ANCESTRAL SPECIES	40	ENSGT00950000182989.D.a.a.g.b	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.e.a.a ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.b.f.a.b	ENSGT00390000004737.b.a.o.a.a.b.fb.a	ENSGT00390000004737.b.a.o.a.a.b.eb.b	ENSGT01030000234639.A.b.a.b.a.b.b.e.b.a ##15	ENSGT00390000004737.b.a.o.a.b.e	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Donkey	MODERN SPECIES	12	NELL1 (ENSEASG00005013078)	SLC6A5 (ENSEASG00005013072)	PRMT3 (ENSEASG00005013043)	HTATIP2 (ENSEASG00005036432)	DBX1 (ENSEASG00005013038)	ENSEASG00005035973	NAV2 (ENSEASG00005013028)	E2F8 (ENSEASG00005013023)	CSRP3 (ENSEASG00005035822)	ZDHHC13 (ENSEASG00005013019)	ENSEASG00005013011 ##15	PTPN5 (ENSEASG00005012958) #16	TMEM86A (ENSEASG00005030607) #17	SPTY2D1 (ENSEASG00005012954) #18	MISFA (ENSEASG00005032488)	UEVLD (ENSEASG00005012948) #21	TSG101 (ENSEASG00005012943) #22	LDHC (ENSEASG00005012917) #23	LDHA (ENSEASG00005012914) #24	GTF2H1 (ENSEASG00005012908) #25	HPS5 (ENSEASG00005012900) #27	ENSEASG00005026588	ENSEASG00005035302	ENSEASG00005035911	ENSEASG00005037086	ENSEASG00005012966 ##15	ENSEASG00005031856	ENSEASG00005034187	ENSEASG00005030092	ENSEASG00005023828	ENSEASG00005007576
Horse	MODERN SPECIES	28	NELL1 (ENSECAG00000024835)	SLC6A5 (ENSECAG00000022340)	PRMT3 (ENSECAG00000021124)	HTATIP2 (ENSECAG00000050787)	ENSECAG00000041222	DBX1 (ENSECAG00000019994)	NAV2 (ENSECAG00000017807)	ENSECAG00000037265	MGRG1 (ENSECAG00000003099) ##15	ENSECAG00000001949 ##15	ENSECAG00000039541 ##15	PTPN5 (ENSECAG00000011842) #16	TMEM86A (ENSECAG00000011358) #17	SPTY2D1 (ENSECAG00000011055) #18	ENSECAG00000050200	UEVLD (ENSECAG00000009898) #21	TSG101 (ENSECAG00000004362) #22	LDHC (ENSECAG00000022126) #23	LDHA (ENSECAG00000020669) #24	GTF2H1 (ENSECAG00000019056) #25	HPS5 (ENSECAG00000015720) #27	ENSECAG00000036499	ENSECAG00000048632	ENSECAG00000034393 ##15	ENSECAG00000013758	ENSECAG00000030592	ENSECAG00000032096	ENSECAG00000011404	SAAL1 (ENSECAG00000009781)	SERGEF (ENSECAG00000005626)	SERGEF (ENSECAG00000056096)
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00810000125439.A	ENSGT00950000182989.D.a.a.g.b	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Microchiroptera	ANCESTRAL SPECIES	31	ENSGT00810000125439.A	ENSGT00950000182989.D.a.a.g.b	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242.a	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.a	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Microbat	MODERN SPECIES	1061	ENSMLUG00000025276 ##15	ENSMLUG00000016135	ENSMLUG00000023303 ##15	ENSMLUG00000006167 ##15	ENSMLUG00000024710 ##15	ENSMLUG00000022292 ##15	ENSMLUG00000027629 ##15	ENSMLUG00000011979	ENSMLUG00000024671 ##15	ENSMLUG00000028143 ##15	ENSMLUG00000024241 ##15	PTPN5 (ENSMLUG00000016411) #16	IGSF22 (ENSMLUG00000016399)	TMEM86A (ENSMLUG00000016391) #17	ENSMLUG00000027941 #18	UEVLD (ENSMLUG00000016358) #21	TSG101 (ENSMLUG00000016353) #22	LDHC (ENSMLUG00000016348) #23	ENSMLUG00000016343 #24	GTF2H1 (ENSMLUG00000016329) #25	HPS5 (ENSMLUG00000016318) #27	ENSMLUG00000008051	ENSMLUG00000016314	ENSMLUG00000028709	SAAL1 (ENSMLUG00000008022)	TPH1 (ENSMLUG00000008011)	ENSMLUG00000007974	KCNC1 (ENSMLUG00000007950)	MYOD1 (ENSMLUG00000007940)	ENSMLUG00000029772	OTOG (ENSMLUG00000002545)
Megabat	MODERN SPECIES	1666															SPTY2D1 (ENSPVAG00000007215) #18	UEVLD (ENSPVAG00000007211) #21	TSG101 (ENSPVAG00000007210) #22	LDHAL6A (ENSPVAG00000007209)	LDHC (ENSPVAG00000007207) #23	LDHA (ENSPVAG00000007206) #24	GTF2H1 (ENSPVAG00000007205) #25	HPS5 (ENSPVAG00000007202) #27
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Primates	ANCESTRAL SPECIES		ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a ##24	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Haplorrhini	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Simiiformes	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Macaca	ANCESTRAL SPECIES	2	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.a ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Pig-tailed macaque	MODERN SPECIES	131	PRMT3 (ENSMNEG00000032665)	HTATIP2 (ENSMNEG00000030788)	DBX1 (ENSMNEG00000041763)	ENSMNEG00000027094	ENSMNEG00000021455	NAV2 (ENSMNEG00000043339)	ENSMNEG00000045165	E2F8 (ENSMNEG00000040013)	CSRP3 (ENSMNEG00000033382)	ZDHHC13 (ENSMNEG00000037030)	PTPN5 (ENSMNEG00000032650) #16	IGSF22 (ENSMNEG00000035177)	TMEM86A (ENSMNEG00000041047) #17	SPTY2D1 (ENSMNEG00000038544) #18	ENSMNEG00000044112	UEVLD (ENSMNEG00000034421) #21	TSG101 (ENSMNEG00000041853) #22	LDHAL6A (ENSMNEG00000041126)	ENSMNEG00000024949	LDHC (ENSMNEG00000033782) #23	ENSMNEG00000042413 ##24	GTF2H1 (ENSMNEG00000036878) #25	ENSMNEG00000042089	HPS5 (ENSMNEG00000030883) #27	SAA2 (ENSMNEG00000041389)	SAA4 (ENSMNEG00000043404)	ENSMNEG00000035570	SAAL1 (ENSMNEG00000021954)	TPH1 (ENSMNEG00000028667)	SERGEF (ENSMNEG00000043939)	KCNC1 (ENSMNEG00000029034)
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT01100000263539.a.a.b.a.a.a.a.a.a	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.v	ENSGT00390000004737.b.a.o.a.a.b.w	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Rhesus	MODERN SPECIES	5	SLC6A5 (ENSMMUG00000009053)	PRMT3 (ENSMMUG00000010719)	DBX1 (ENSMMUG00000040777)	NAV2 (ENSMMUG00000016942)	ENSMMUG00000064922	E2F8 (ENSMMUG00000010853)	CSRP3 (ENSMMUG00000019119)	ZDHHC13 (ENSMMUG00000007041)	MRGPRX1 (ENSMMUG00000060151) ##15	PTPN5 (ENSMMUG00000007133) #16	IGSF22 (ENSMMUG00000063818)	TMEM86A (ENSMMUG00000041731) #17	SPTY2D1 (ENSMMUG00000019329) #18	MISFA (ENSMMUG00000044847)	ENSMMUG00000064700	UEVLD (ENSMMUG00000000336) #21	TSG101 (ENSMMUG00000014613) #22	LDHAL6A (ENSMMUG00000014614)	LDHC (ENSMMUG00000014615) #23	LDHA (ENSMMUG00000031024) ##24	GTF2H1 (ENSMMUG00000017959) #25	HPS5 (ENSMMUG00000017958) #27	ENSMMUG00000060306	ENSMMUG00000011177	SAA4 (ENSMMUG00000017960)	MRGPRX4 (ENSMMUG00000055303) ##15	ENSMMUG00000054997	MRGPRX3 (ENSMMUG00000060779) ##15	SAAL1 (ENSMMUG00000014377)	TPH1 (ENSMMUG00000006096)	SERGEF (ENSMMUG00000006405)
Cercopithecinae_b	ANCESTRAL SPECIES	27	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147178	ENSGT00950000182891.a.a.b.a.b.b.b.o	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.b.d	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Olive baboon	MODERN SPECIES	3	HTATIP2 (ENSPANG00000016673)	DBX1 (ENSPANG00000035010)	ENSPANG00000029965	NAV2 (ENSPANG00000017038)	E2F8 (ENSPANG00000005225)	CSRP3 (ENSPANG00000005742)	ZDHHC13 (ENSPANG00000026209)	MRGPRX2 (ENSPANG00000044494) ##15	ENSPANG00000048137	PTPN5 (ENSPANG00000019133) #16	IGSF22 (ENSPANG00000025559)	TMEM86A (ENSPANG00000047838) #17	ENSPANG00000051041	SPTY2D1 (ENSPANG00000007552) #18	ENSPANG00000040640	UEVLD (ENSPANG00000007976) #21	ENSPANG00000044560	TSG101 (ENSPANG00000005375) #22	LDHAL6A (ENSPANG00000008347)	ENSPANG00000047131	LDHC (ENSPANG00000025849) #23	LDHA (ENSPANG00000019081) ##24	GTF2H1 (ENSPANG00000002504) #25	HPS5 (ENSPANG00000000205) #27	ENSPANG00000025709	SAA4 (ENSPANG00000012057)	ENSPANG00000040114 ##15	ENSPANG00000044809 ##15	SAAL1 (ENSPANG00000006539)	TPH1 (ENSPANG00000007046)	SERGEF (ENSPANG00000025793)
Cercopithecinae_d	ANCESTRAL SPECIES	99								ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.a.a ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b.a.a.a.a ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.y	ENSGT00390000004737.b.a.o.a.a.b.x	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Drill	MODERN SPECIES	92								CSRP3 (ENSMLEG00000031774)	ZDHHC13 (ENSMLEG00000034353)	ENSMLEG00000032116 ##15	PTPN5 (ENSMLEG00000015240) #16	IGSF22 (ENSMLEG00000014920)	TMEM86A (ENSMLEG00000030845) #17	SPTY2D1 (ENSMLEG00000039001) #18	ENSMLEG00000041471	UEVLD (ENSMLEG00000038723) #21
Sooty mangabey	MODERN SPECIES	290								CSRP3 (ENSCATG00000030525)	ZDHHC13 (ENSCATG00000009429)	ENSCATG00000035106 ##15	PTPN5 (ENSCATG00000015959) #16	IGSF22 (ENSCATG00000042436)	TMEM86A (ENSCATG00000029000) #17	SPTY2D1 (ENSCATG00000036164) #18	ENSCATG00000033511	UEVLD (ENSCATG00000038967) #21	TSG101 (ENSCATG00000009882) #22	LDHAL6A (ENSCATG00000032545)	ENSCATG00000039048 ##24	GTF2H1 (ENSCATG00000035696) #25	HPS5 (ENSCATG00000035219) #27	ENSCATG00000031928	ENSCATG00000043701	SAA4 (ENSCATG00000033584)	SAAL1 (ENSCATG00000028077)	TPH1 (ENSCATG00000040162)	SERGEF (ENSCATG00000039738)	KCNC1 (ENSCATG00000031951)	MYOD1 (ENSCATG00000031639)	OTOG (ENSCATG00000036498)	USH1C (ENSCATG00000025153)
Vervet Monkey	MODERN SPECIES		NELL1 (ENSCSAG00000005158)	SLC6A5 (ENSCSAG00000005149)	PRMT3 (ENSCSAG00000005127)	HTATIP2 (ENSCSAG00000005121)	DBX1 (ENSCSAG00000005115)	NAV2 (ENSCSAG00000005106)	E2F8 (ENSCSAG00000005093)	CSRP3 (ENSCSAG00000005088)	ZDHHC13 (ENSCSAG00000005077)	MRGPRX2 (ENSCSAG00000019321) ##15	MRGPRX1 (ENSCSAG00000019322) ##15	PTPN5 (ENSCSAG00000005069) #16	IGSF22 (ENSCSAG00000005064)	TMEM86A (ENSCSAG00000005058) #17	SPTY2D1 (ENSCSAG00000005056) #18	UEVLD (ENSCSAG00000005052) #21	TSG101 (ENSCSAG00000005050) #22	LDHAL6A (ENSCSAG00000005046)	LDHC (ENSCSAG00000005043) #23	ENSCSAG00000005035 ##24	GTF2H1 (ENSCSAG00000005008) #25	HPS5 (ENSCSAG00000005000) #27	ENSCSAG00000004969	ENSCSAG00000004965	SAA4 (ENSCSAG00000004962)	MRGPRX4 (ENSCSAG00000004961) ##15	ENSCSAG00000004958 ##15	ENSCSAG00000019323 ##15	SAAL1 (ENSCSAG00000004954)	TPH1 (ENSCSAG00000004950)	SERGEF (ENSCSAG00000004946)
Rhinopithecus	ANCESTRAL SPECIES	188	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00390000003721.d.a.c.b	ENSGT00940000153201.j.k.a.a.b.a.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00940000155622.f	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b
Black snub-nosed monkey	MODERN SPECIES	167	NELL1 (ENSRBIG00000044585)	SLC6A5 (ENSRBIG00000041447)	PRMT3 (ENSRBIG00000032769)	HTATIP2 (ENSRBIG00000040284)	DBX1 (ENSRBIG00000027962)	ENSRBIG00000041586	NAV2 (ENSRBIG00000035173)	E2F8 (ENSRBIG00000042597)	CSRP3 (ENSRBIG00000032571)	ZDHHC13 (ENSRBIG00000037316)	PTPN5 (ENSRBIG00000030553) #16	IGSF22 (ENSRBIG00000037442)	TMEM86A (ENSRBIG00000027698) #17	SPTY2D1 (ENSRBIG00000037131) #18	ENSRBIG00000034293	UEVLD (ENSRBIG00000030739) #21	TSG101 (ENSRBIG00000043582) #22	LDHAL6A (ENSRBIG00000037637)	ENSRBIG00000029108	LDHC (ENSRBIG00000039182) #23	ENSRBIG00000003809 ##24	GTF2H1 (ENSRBIG00000027586) #25	HPS5 (ENSRBIG00000030954) #27	ENSRBIG00000041504
Golden snub-nosed monkey	MODERN SPECIES	1485											PTPN5 (ENSRROG00000034386) #16	IGSF22 (ENSRROG00000033236)	TMEM86A (ENSRROG00000039497) #17	SPTY2D1 (ENSRROG00000038958) #18	ENSRROG00000029345	UEVLD (ENSRROG00000043503) #21	TSG101 (ENSRROG00000007381) #22	LDHAL6A (ENSRROG00000041316)	ENSRROG00000029002	LDHC (ENSRROG00000025865) #23	ENSRROG00000034244 ##24	GTF2H1 (ENSRROG00000044245) #25	HPS5 (ENSRROG00000045543) #27	ENSRROG00000032522	SAA4 (ENSRROG00000041678)	ENSRROG00000030356	MRGPRX3 (ENSRROG00000022175) ##15	ENSRROG00000042459	SAAL1 (ENSRROG00000035972)	TPH1 (ENSRROG00000040674)	SERGEF (ENSRROG00000044406)
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00910000147178	ENSGT00960000187178	ENSGT00390000004965.eb	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Hominidae	ANCESTRAL SPECIES	1	ENSGT00910000147178	ENSGT00960000187178	ENSGT00390000004965.eb	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	20	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.db	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT00940000155182.b.e.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT00940000155182.b.e.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a
Pan	ANCESTRAL SPECIES	1	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00960000187178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00910000144115.a.lb	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.b ##24	ENSGT00390000015066.c #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b.cb.a	ENSGT00390000001347.wb	ENSGT00390000004737.b.a.o.a.b.c.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.f	ENSGT00940000155182.b.e.b	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.a.a.b ##15	ENSGT00390000004737.b.b
Bonobo	MODERN SPECIES	2	ENSPPAG00000038831	ENSPPAG00000038816	NAV2 (ENSPPAG00000033637)	E2F8 (ENSPPAG00000034910)	CSRP3 (ENSPPAG00000034864)	ZDHHC13 (ENSPPAG00000044061)	MRGPRX2 (ENSPPAG00000020811) ##15	MRGPRX1 (ENSPPAG00000021579) ##15	PTPN5 (ENSPPAG00000029191) #16	IGSF22 (ENSPPAG00000041033)	TMEM86A (ENSPPAG00000030156) #17	ENSPPAG00000028152	SPTY2D1 (ENSPPAG00000032171) #18	ENSPPAG00000021694	ENSPPAG00000028789	UEVLD (ENSPPAG00000028010) #21	TSG101 (ENSPPAG00000032909) #22	LDHAL6A (ENSPPAG00000021825)	LDHC (ENSPPAG00000038065) #23	LDHA (ENSPPAG00000043477) ##24	GTF2H1 (ENSPPAG00000029804) #25	HPS5 (ENSPPAG00000039372) #27	SAA1 (ENSPPAG00000039165)	ENSPPAG00000041426	ENSPPAG00000031094	SAA4 (ENSPPAG00000036586)	ENSPPAG00000039649	MRGPRX4 (ENSPPAG00000008504) ##15	MRGPRX3 (ENSPPAG00000011150) ##15	SAAL1 (ENSPPAG00000035982)	TPH1 (ENSPPAG00000038830)
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000050042	ENSPTRG00000043037	NAV2 (ENSPTRG00000003436)	E2F8 (ENSPTRG00000003435)	CSRP3 (ENSPTRG00000003434)	ZDHHC13 (ENSPTRG00000003433)	MRGPRX2 (ENSPTRG00000003432) ##15	MRGPRX1 (ENSPTRG00000051611) ##15	PTPN5 (ENSPTRG00000003430) #16	IGSF22 (ENSPTRG00000003429)	TMEM86A (ENSPTRG00000003428) #17	ENSPTRG00000041876	SPTY2D1 (ENSPTRG00000003426) #18	ENSPTRG00000049900	ENSPTRG00000045305	UEVLD (ENSPTRG00000003425) #21	TSG101 (ENSPTRG00000003424) #22	LDHAL6A (ENSPTRG00000003423)	LDHC (ENSPTRG00000003422) #23	LDHA (ENSPTRG00000003421) ##24	GTF2H1 (ENSPTRG00000003420) #25	HPS5 (ENSPTRG00000003419) #27	SAA1 (ENSPTRG00000022627)	ENSPTRG00000052833	SAA2 (ENSPTRG00000003416)	SAA4 (ENSPTRG00000003415)	ENSPTRG00000050361	ENSPTRG00000039747	MRGPRX4 (ENSPTRG00000045402) ##15	MRGPRX3 (ENSPTRG00000052640) ##15	SAAL1 (ENSPTRG00000003410)
Human	MODERN SPECIES	2	SLC6A5 (ENSG00000165970)	PRMT3 (ENSG00000185238)	HTATIP2 (ENSG00000109854)	DBX1 (ENSG00000109851)	NAV2 (ENSG00000166833)	E2F8 (ENSG00000129173)	CSRP3 (ENSG00000129170)	ZDHHC13 (ENSG00000177054)	MRGPRX2 (ENSG00000183695) ##15	MRGPRX1 (ENSG00000170255) ##15	PTPN5 (ENSG00000110786) #16	IGSF22 (ENSG00000179057)	TMEM86A (ENSG00000151117) #17	SPTY2D1 (ENSG00000179119) #18	MISFA (ENSG00000247595)	UEVLD (ENSG00000151116) #21	TSG101 (ENSG00000074319) #22	LDHAL6A (ENSG00000166800)	LDHC (ENSG00000166796) #23	LDHA (ENSG00000134333) ##24	GTF2H1 (ENSG00000110768) #25	HPS5 (ENSG00000110756) #27	SAA1 (ENSG00000173432)	SAA2 (ENSG00000134339)	SAA2-SAA4 (ENSG00000255071)	SAA4 (ENSG00000148965)	MRGPRX4 (ENSG00000179817) ##15	MRGPRX3 (ENSG00000179826) ##15	SAAL1 (ENSG00000166788)	TPH1 (ENSG00000129167)	SERGEF (ENSG00000129158)
Gorilla	MODERN SPECIES	2	ENSGGOG00000037981	NAV2 (ENSGGOG00000006949)	ENSGGOG00000042400	E2F8 (ENSGGOG00000011430)	CSRP3 (ENSGGOG00000004823)	ZDHHC13 (ENSGGOG00000004817)	MRGPRX2 (ENSGGOG00000015832) ##15	ENSGGOG00000024277 ##15	ENSGGOG00000025813 ##15	PTPN5 (ENSGGOG00000007218) #16	IGSF22 (ENSGGOG00000007208)	TMEM86A (ENSGGOG00000007204) #17	ENSGGOG00000041151	SPTY2D1 (ENSGGOG00000010379) #18	ENSGGOG00000043165	UEVLD (ENSGGOG00000010367) #21	TSG101 (ENSGGOG00000010359) #22	LDHAL6A (ENSGGOG00000039584)	LDHC (ENSGGOG00000015884) #23	LDHA (ENSGGOG00000010350) ##24	GTF2H1 (ENSGGOG00000008405) #25	HPS5 (ENSGGOG00000010309) #27	ENSGGOG00000006531	ENSGGOG00000010297	SAA2 (ENSGGOG00000010301)	SAA4 (ENSGGOG00000003359)	ENSGGOG00000025669	ENSGGOG00000039414	MRGPRX4 (ENSGGOG00000016538) ##15	TPH1 (ENSGGOG00000009041)	SERGEF (ENSGGOG00000000685)
Orangutan	MODERN SPECIES	2	ENSPPYG00000003421	DBX1 (ENSPPYG00000003422)	NAV2 (ENSPPYG00000003423)	ENSPPYG00000033030	ENSPPYG00000031150	E2F8 (ENSPPYG00000003424)	CSRP3 (ENSPPYG00000003425)	ZDHHC13 (ENSPPYG00000003426)	MRGPRX1 (ENSPPYG00000034469) ##15	PTPN5 (ENSPPYG00000003430) #16	IGSF22 (ENSPPYG00000039072)	TMEM86A (ENSPPYG00000003431) #17	SPTY2D1 (ENSPPYG00000003432) #18	MISFA (ENSPPYG00000040732)	ENSPPYG00000002907	UEVLD (ENSPPYG00000003433) #21	TSG101 (ENSPPYG00000003434) #22	LDHAL6A (ENSPPYG00000003435)	LDHC (ENSPPYG00000003436) #23	LDHA (ENSPPYG00000003437) ##24	GTF2H1 (ENSPPYG00000003438) #25	HPS5 (ENSPPYG00000003439) #27	ENSPPYG00000036972	SAA2 (ENSPPYG00000003440)	SAA4 (ENSPPYG00000031722)	MRGPRX4 (ENSPPYG00000039348) ##15	ENSPPYG00000003442	MRGPRX3 (ENSPPYG00000038501) ##15	SAAL1 (ENSPPYG00000039447)	TPH1 (ENSPPYG00000003445)	SERGEF (ENSPPYG00000003446)
Gibbon	MODERN SPECIES	5	ENSNLEG00000032578	NAV2 (ENSNLEG00000017807)	ENSNLEG00000028986	ENSNLEG00000033072	E2F8 (ENSNLEG00000017803)	CSRP3 (ENSNLEG00000017801)	ZDHHC13 (ENSNLEG00000017797)	ENSNLEG00000031608 ##15	ENSNLEG00000032837 ##15	PTPN5 (ENSNLEG00000017791) #16	IGSF22 (ENSNLEG00000017788)	TMEM86A (ENSNLEG00000017787) #17	ENSNLEG00000030606	SPTY2D1 (ENSNLEG00000017786) #18	ENSNLEG00000030850	UEVLD (ENSNLEG00000017785) #21	TSG101 (ENSNLEG00000017783) #22	LDHAL6A (ENSNLEG00000017780)	LDHC (ENSNLEG00000028060) #23	LDHA (ENSNLEG00000030432) ##24	GTF2H1 (ENSNLEG00000017760) #25	HPS5 (ENSNLEG00000017752) #27	ENSNLEG00000017749	ENSNLEG00000028928	ENSNLEG00000017750	SAAL1 (ENSNLEG00000017747)	TPH1 (ENSNLEG00000017744)	SERGEF (ENSNLEG00000017742)	KCNC1 (ENSNLEG00000017741)	OTOG (ENSNLEG00000017737)	USH1C (ENSNLEG00000017735)
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00390000008184.k	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.c ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000154770.q.b	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a.f.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Cebidae	ANCESTRAL SPECIES		ENSGT00390000008184.k	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i ##15	ENSGT01030000234639.A.b.a.b.a.b.b.j.c ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000154770.q.b	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a.f.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00940000156825	ENSGT00390000008184.k	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.c ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A.i #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000154770.q.b	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.a.a.a.f.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Capuchin	MODERN SPECIES	39	ENSCCAG00000027873	ENSCCAG00000029745	DBX1 (ENSCCAG00000030638)	ENSCCAG00000030549	ENSCCAG00000030635	NAV2 (ENSCCAG00000023073)	E2F8 (ENSCCAG00000032678)	CSRP3 (ENSCCAG00000037898)	ZDHHC13 (ENSCCAG00000031657)	PTPN5 (ENSCCAG00000031767) #16	IGSF22 (ENSCCAG00000015473)	TMEM86A (ENSCCAG00000022653) #17	ENSCCAG00000030365	ENSCCAG00000036425 #18	ENSCCAG00000037680	UEVLD (ENSCCAG00000036814) #21	ENSCCAG00000033011	TSG101 (ENSCCAG00000036169) #22	ENSCCAG00000020722	LDHAL6A (ENSCCAG00000031041)	LDHC (ENSCCAG00000031200) #23	ENSCCAG00000029060 ##24	ENSCCAG00000028937	GTF2H1 (ENSCCAG00000028407) #25	HPS5 (ENSCCAG00000032081) #27	ENSCCAG00000024577	ENSCCAG00000024041	SAA4 (ENSCCAG00000025050)	ENSCCAG00000022385	SAAL1 (ENSCCAG00000025101)	TPH1 (ENSCCAG00000023915)
Bolivian squirrel monkey	MODERN SPECIES	42	SLC6A5 (ENSSBOG00000008436)	PRMT3 (ENSSBOG00000034320)	HTATIP2 (ENSSBOG00000019955)	DBX1 (ENSSBOG00000028890)	ENSSBOG00000034512	NAV2 (ENSSBOG00000031555)	E2F8 (ENSSBOG00000014864)	CSRP3 (ENSSBOG00000026732)	ZDHHC13 (ENSSBOG00000023472)	ENSSBOG00000023462 ##15	PTPN5 (ENSSBOG00000022094) #16	IGSF22 (ENSSBOG00000035057)	TMEM86A (ENSSBOG00000022647) #17	SPTY2D1 (ENSSBOG00000019822) #18	ENSSBOG00000018184	UEVLD (ENSSBOG00000020574) #21	ENSSBOG00000023915	ENSSBOG00000016234	TSG101 (ENSSBOG00000032898) #22	LDHAL6A (ENSSBOG00000032789)	LDHC (ENSSBOG00000029573) #23	ENSSBOG00000023979 ##24	GTF2H1 (ENSSBOG00000035194) #25	HPS5 (ENSSBOG00000034848) #27	ENSSBOG00000025130	SAA4 (ENSSBOG00000035220)	SAAL1 (ENSSBOG00000000873)	TPH1 (ENSSBOG00000021704)	SERGEF (ENSSBOG00000021636)	KCNC1 (ENSSBOG00000032934)	MYOD1 (ENSSBOG00000032168)
Marmoset	MODERN SPECIES	2	ENSCJAG00000047933	DBX1 (ENSCJAG00000006734)	ENSCJAG00000087227	NAV2 (ENSCJAG00000006739)	E2F8 (ENSCJAG00000006811)	CSRP3 (ENSCJAG00000006844)	ZDHHC13 (ENSCJAG00000006851)	MRGPRX2 (ENSCJAG00000006924) ##15	ENSCJAG00000022906 ##15	PTPN5 (ENSCJAG00000009164) #16	IGSF22 (ENSCJAG00000006935)	TMEM86A (ENSCJAG00000076554) #17	SPTY2D1 (ENSCJAG00000006985) #18	ENSCJAG00000080960	ENSCJAG00000075110 #20	UEVLD (ENSCJAG00000007006) #21	TSG101 (ENSCJAG00000086769) #22	LDHAL6A (ENSCJAG00000007067)	ENSCJAG00000080933	LDHC (ENSCJAG00000007081) #23	GTF2H1 (ENSCJAG00000007129) #25	ENSCJAG00000074922	HPS5 (ENSCJAG00000007185) #27	ENSCJAG00000007204	ENSCJAG00000081433	SAA4 (ENSCJAG00000007213)	ENSCJAG00000043934	ENSCJAG00000007283	KCNC1 (ENSCJAG00000007290)	MYOD1 (ENSCJAG00000009258)	OTOG (ENSCJAG00000009263)
Mas night monkey	MODERN SPECIES	830	PRMT3 (ENSANAG00000024501)	HTATIP2 (ENSANAG00000030661)	DBX1 (ENSANAG00000026125)	ENSANAG00000024944	NAV2 (ENSANAG00000034282)	E2F8 (ENSANAG00000021738)	CSRP3 (ENSANAG00000020288)	ZDHHC13 (ENSANAG00000021790)	ENSANAG00000021063 ##15	ENSANAG00000016865 ##15	PTPN5 (ENSANAG00000021912) #16	IGSF22 (ENSANAG00000025272)	TMEM86A (ENSANAG00000019649) #17	SPTY2D1 (ENSANAG00000008192) #18	ENSANAG00000024616	UEVLD (ENSANAG00000027080) #21	ENSANAG00000022035	TSG101 (ENSANAG00000019676) #22	LDHAL6A (ENSANAG00000023203)	LDHC (ENSANAG00000037671) #23	ENSANAG00000037705 ##24	GTF2H1 (ENSANAG00000023697) #25	HPS5 (ENSANAG00000018225) #27	ENSANAG00000021057	SAA4 (ENSANAG00000020818)	ENSANAG00000021597	SAAL1 (ENSANAG00000036857)	TPH1 (ENSANAG00000018818)	SERGEF (ENSANAG00000036496)	KCNC1 (ENSANAG00000034875)	MYOD1 (ENSANAG00000032905)
Tarsier	MODERN SPECIES	4895														SPTY2D1 (ENSTSYG00000011672)	ENSTSYG00000031331	UEVLD (ENSTSYG00000009319) #21	TSG101 (ENSTSYG00000009228) #22	LDHAL6A (ENSTSYG00000009217)	ENSTSYG00000005772	ENSTSYG00000027606 #23
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Lemuriformes	ANCESTRAL SPECIES	16	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000164064	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.b ##24	ENSGT01030000235549	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b
Mouse lemur	MODERN SPECIES	169	TSPAN7 (ENSMICG00000011737)	OTC (ENSMICG00000011724)	ENSMICG00000026397	SRPX (ENSMICG00000001454)	SYTL5 (ENSMICG00000045851)	ENSMICG00000033194	CYBB (ENSMICG00000026872)	XK (ENSMICG00000047814)	LANCL3 (ENSMICG00000005180)	PRRG1 (ENSMICG00000043549)	ENSMICG00000032179	ENSMICG00000034748	ENSMICG00000031482	ENSMICG00000035221	ENSMICG00000026518	ENSMICG00000041675 #21	ENSMICG00000037213	ENSMICG00000015146	PPP2R3B (ENSMICG00000030474)	GTPBP6 (ENSMICG00000044435)	PLCXD1 (ENSMICG00000045160)	SHOX (ENSMICG00000014601)	ENSMICG00000004731	ENSMICG00000033357	ENSMICG00000027916	ENSMICG00000042557	TMEM47 (ENSMICG00000044159)	ENSMICG00000042840	ENSMICG00000042555	ENSMICG00000032834	DMD (ENSMICG00000028112)
Lemuriformes_a	ANCESTRAL SPECIES	24	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.k.b ##15	ENSGT01030000234639.A.b.a.b.a.b.b.k.a ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01100000263734	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.k.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Coquerels sifaka	MODERN SPECIES	591		ENSPCOG00000026464	HTATIP2 (ENSPCOG00000013907)	DBX1 (ENSPCOG00000019760)	NAV2 (ENSPCOG00000017617)	E2F8 (ENSPCOG00000018715)	CSRP3 (ENSPCOG00000027335)	ZDHHC13 (ENSPCOG00000005078)	ENSPCOG00000002623 ##15	ENSPCOG00000017911 ##15	PTPN5 (ENSPCOG00000018291) #16	IGSF22 (ENSPCOG00000021301)	TMEM86A (ENSPCOG00000015643) #17	SPTY2D1 (ENSPCOG00000020606) #18	ENSPCOG00000015051	UEVLD (ENSPCOG00000016777) #21	TSG101 (ENSPCOG00000022058) #22	ENSPCOG00000022047 #23	ENSPCOG00000025606	GTF2H1 (ENSPCOG00000016794) #25	HPS5 (ENSPCOG00000018482) #27	SAA4 (ENSPCOG00000014650)	ENSPCOG00000008984	ENSPCOG00000023938	SAAL1 (ENSPCOG00000013362)	TPH1 (ENSPCOG00000022787)	SERGEF (ENSPCOG00000015228)	KCNC1 (ENSPCOG00000028118)	MYOD1 (ENSPCOG00000028149)	OTOG (ENSPCOG00000023596)	USH1C (ENSPCOG00000024567)
Greater bamboo lemur	MODERN SPECIES	809											TCAIM (ENSPSMG00000022586)	TOPAZ1 (ENSPSMG00000022561)	ZNF445 (ENSPSMG00000022546)	SPTY2D1 (ENSPSMG00000022528) #18	ENSPSMG00000022520	UEVLD (ENSPSMG00000022445) #21	TSG101 (ENSPSMG00000022312) #22	ENSPSMG00000022283	LDHC (ENSPSMG00000022259) #23	LDHA (ENSPSMG00000022183) ##24	GTF2H1 (ENSPSMG00000022156) #25	ENSPSMG00000022128	HPS5 (ENSPSMG00000022113) #27
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Tree shrew	MODERN SPECIES	360																ENSTBEG00000012098 #21	ENSTBEG00000011836 #22	LDHC (ENSTBEG00000011741) #23	ENSTBEG00000011714 #24	GTF2H1 (ENSTBEG00000011488) #25
Glires	ANCESTRAL SPECIES	1	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242986	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912
Muroidea	ANCESTRAL SPECIES	65	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242986	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000155663	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242986	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Cricetidae	ANCESTRAL SPECIES	34	ENSGT00910000147241	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246786 #19	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066.j #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p
Cricetinae	ANCESTRAL SPECIES	52	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246786 #19	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.i ##24	ENSGT00390000015066.j #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p
Chinese hamster chok1gshd	MODERN SPECIES	226	ENSCGRG00001014497 ##15	ENSCGRG00001015132 ##15	ENSCGRG00001013322 ##15	ENSCGRG00001017168 ##15	ENSCGRG00001013950 ##15	ENSCGRG00001000128 ##15	Mrgprx1 (ENSCGRG00001013350) ##15	ENSCGRG00001003638	ENSCGRG00001004027 #15	ENSCGRG00001005262	Ptpn5 (ENSCGRG00001019501) #16	Tmem86a (ENSCGRG00001000634) #17	Spty2d1 (ENSCGRG00001015942) #18	ENSCGRG00001020032	Misfa (ENSCGRG00001020067) #20	Uevld (ENSCGRG00001020288) #21	Tsg101 (ENSCGRG00001022420) #22	Ldhc (ENSCGRG00001018177) #23	ENSCGRG00001003218 ##24	Gtf2h1 (ENSCGRG00001007611) #25	Hps5 (ENSCGRG00001010559) #27	ENSCGRG00001012513	ENSCGRG00001012524
Golden Hamster	MODERN SPECIES	908										ENSMAUG00000014319 #15	Ptpn5 (ENSMAUG00000017057) #16	Tmem86a (ENSMAUG00000015010) #17	Spty2d1 (ENSMAUG00000015865) #18	ENSMAUG00000013699 #19	Misfa (ENSMAUG00000013290) #20	Uevld (ENSMAUG00000013172) #21	Tsg101 (ENSMAUG00000014719) #22	Ldhc (ENSMAUG00000011667) #23	ENSMAUG00000010401 #24	ENSMAUG00000009338 #25	ENSMAUG00000015950 #26	ENSMAUG00000010870 #27
Cricetidae_B	ANCESTRAL SPECIES	73									ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246786 #19	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066.j #25	ENSGT00940000155818 #27
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000025848	ENSPEMG00000028866	ENSPEMG00000029784	ENSPEMG00000024562	ENSPEMG00000027816	ENSPEMG00000027080	ENSPEMG00000025968	Mrgprx1 (ENSPEMG00000007777) ##15	ENSPEMG00000022426	ENSPEMG00000021299 #15	Ptpn5 (ENSPEMG00000022553) #16	Tmem86a (ENSPEMG00000024287) #17	ENSPEMG00000023153 #18	ENSPEMG00000021660 #19	Misfa (ENSPEMG00000021845) #20	Uevld (ENSPEMG00000012328) #21	ENSPEMG00000022662 #22	ENSPEMG00000022031 #23	ENSPEMG00000011562 ##24	ENSPEMG00000013216 #25	ENSPEMG00000028549	ENSPEMG00000019594	ENSPEMG00000028728	Luzp2 (ENSPEMG00000019695)	Siglech (ENSPEMG00000016963)	Tubgcp5 (ENSPEMG00000017749)	Cyfip1 (ENSPEMG00000020064)	Nipa2 (ENSPEMG00000028381)	Nipa1 (ENSPEMG00000011557)	Herc2 (ENSPEMG00000019120)	Oca2 (ENSPEMG00000020098)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	9	Gas2 (ENSMOCG00000013131)	Svip (ENSMOCG00000012616)	ENSMOCG00000001550	ENSMOCG00000000184	ENSMOCG00000017120 ##15	ENSMOCG00000012949	ENSMOCG00000000883 ##15	ENSMOCG00000009273	Mrgprx1 (ENSMOCG00000021193) ##15	ENSMOCG00000020275 #15	Ptpn5 (ENSMOCG00000002109) #16	Tmem86a (ENSMOCG00000018896) #17	Spty2d1 (ENSMOCG00000016496) #18	ENSMOCG00000010923 #19	Misfa (ENSMOCG00000010685) #20	ENSMOCG00000001154 #21	Tsg101 (ENSMOCG00000019743) #22	ENSMOCG00000016749	ENSMOCG00000015487 #23	ENSMOCG00000002442 #23	ENSMOCG00000020016 ##24	Gtf2h1 (ENSMOCG00000008606) #25	Hps5 (ENSMOCG00000010495) #27	ENSMOCG00000002900	Gabrb3 (ENSMOCG00000022638)	Gabra5 (ENSMOCG00000001448)	Gabrg3 (ENSMOCG00000013639)	Oca2 (ENSMOCG00000009585)	Herc2 (ENSMOCG00000003463)	Nipa1 (ENSMOCG00000008975)	Nipa2 (ENSMOCG00000015300)
Prairie vole	MODERN SPECIES	3	Nsun6 (ENSMOCG00000009814)	Cacnb2 (ENSMOCG00000004971)	Slc39a12 (ENSMOCG00000013804)	Mrc1 (ENSMOCG00000021685)	Tmem236 (ENSMOCG00000020803)	ENSMOCG00000014190	Hacd1 (ENSMOCG00000003364)	St8sia6 (ENSMOCG00000017932)	ENSMOCG00000010310	Vim (ENSMOCG00000007923)	Trdmt1 (ENSMOCG00000019714)	Cubn (ENSMOCG00000001684)	Rsu1 (ENSMOCG00000011180)	C1ql3 (ENSMOCG00000019674)	Pter (ENSMOCG00000013640)	ENSMOCG00000022032 #21	Mindy3 (ENSMOCG00000007860)	Itga8 (ENSMOCG00000020514)	Fam171a1 (ENSMOCG00000021571)	Nmt2 (ENSMOCG00000005760)	Rpp38 (ENSMOCG00000007020)
Murinae	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00960000190993	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Mus	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT00960000190993	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.d ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Mus_A	ANCESTRAL SPECIES	1	ENSGT00530000063074.b.a	ENSGT00960000190993	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.f.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p.c	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Mus_B	ANCESTRAL SPECIES		ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b.d.a.a.b #15	ENSGT01030000234639.A.b.a.b.a.b.a.b.c.a.b.a #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.f.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p.c	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Mouse	MODERN SPECIES	16	Mrgprb8 (ENSMUSG00000050870) ##15	Mrgprb4 (ENSMUSG00000070550) ##15	Mrgprb5 (ENSMUSG00000070551) ##15	Mrgprx1 (ENSMUSG00000070552) ##15	Mrgpra4 (ENSMUSG00000067173) #15	Mrgpra3 (ENSMUSG00000078698) #15	Mrgpra2b (ENSMUSG00000096719) #15	Mrgpra2a (ENSMUSG00000093973) #15	Mrgpra1 (ENSMUSG00000050650) #15	Mrgpra9 (ENSMUSG00000074111) #15	Mrgpra6 (ENSMUSG00000052303) #15	Ptpn5 (ENSMUSG00000030854) #16	Tmem86a (ENSMUSG00000010307) #17	Spty2d1 (ENSMUSG00000049516) #18	Misfa (ENSMUSG00000056509) #20	Uevld (ENSMUSG00000043262) #21	Tsg101 (ENSMUSG00000014402) #22	Ldhc (ENSMUSG00000030851) #23	Ldha (ENSMUSG00000063229) ##24	Gtf2h1 (ENSMUSG00000006599) #25	Hps5 (ENSMUSG00000014418) #27	Saa2 (ENSMUSG00000057465)	Saa1 (ENSMUSG00000074115)	Saa4 (ENSMUSG00000040017)	Saa3 (ENSMUSG00000040026)	Saal1 (ENSMUSG00000006763)	Tph1 (ENSMUSG00000040046)	Sergef (ENSMUSG00000030839)	Kcnc1 (ENSMUSG00000058975)	Myod1 (ENSMUSG00000009471)	Otog (ENSMUSG00000009487)
Mus_C	ANCESTRAL SPECIES	13	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.c.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.a.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.c ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.c.a.b.d ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.d.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.d.a.c.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b.c.b #15	ENSGT01030000234639.A.b.a.b.a.b.a.b.c.a.b.a #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000246954	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e.f.a.a.b ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.p.c	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
spretus	MODERN SPECIES	16	Zdhhc13 (MGP_SPRETEiJ_G0030887)	Mrgprb3 (MGP_SPRETEiJ_G0030886) ##15	Mrgprb2 (MGP_SPRETEiJ_G0030885) ##15	Mrgprx2 (MGP_SPRETEiJ_G0030884) ##15	Mrgprb1 (MGP_SPRETEiJ_G0030883) ##15	Mrgprb8 (MGP_SPRETEiJ_G0030882) ##15	Mrgprb5 (MGP_SPRETEiJ_G0030881) ##15	Mrgprx1 (MGP_SPRETEiJ_G0030880) ##15	MGP_SPRETEiJ_G0030879 #15	MGP_SPRETEiJ_G0030878 #15	Mrgpra6 (MGP_SPRETEiJ_G0030877) #15	Ptpn5 (MGP_SPRETEiJ_G0030876) #16	Tmem86a (MGP_SPRETEiJ_G0030875) #17	Spty2d1 (MGP_SPRETEiJ_G0030874) #18	MGP_SPRETEiJ_G0030873	Uevld (MGP_SPRETEiJ_G0030872) #21	MGP_SPRETEiJ_G0030871 #22	Ldhc (MGP_SPRETEiJ_G0030870) #23	Ldha (MGP_SPRETEiJ_G0030869) ##24	Gtf2h1 (MGP_SPRETEiJ_G0030868) #25	Hps5 (MGP_SPRETEiJ_G0030867) #27	MGP_SPRETEiJ_G0030866	MGP_SPRETEiJ_G0030865	Saa4 (MGP_SPRETEiJ_G0030864)	Saa3 (MGP_SPRETEiJ_G0030863)	Saal1 (MGP_SPRETEiJ_G0030862)	Tph1 (MGP_SPRETEiJ_G0030861)	Sergef (MGP_SPRETEiJ_G0030860)	Kcnc1 (MGP_SPRETEiJ_G0030859)	Myod1 (MGP_SPRETEiJ_G0030858)	Otog (MGP_SPRETEiJ_G0030857)
Steppe mouse	MODERN SPECIES	2560						ENSMSIG00000005653 #15	ENSMSIG00000005637 #15	ENSMSIG00000005598 #15	ENSMSIG00000005594	ENSMSIG00000005585 #15	Ptpn5 (ENSMSIG00000005507) #16	Tmem86a (ENSMSIG00000005482) #17	Spty2d1 (ENSMSIG00000005441) #18	ENSMSIG00000005426	Misfa (ENSMSIG00000005413) #20	Uevld (ENSMSIG00000005367) #21	ENSMSIG00000005342 #22	Ldhc (ENSMSIG00000005281) #23	ENSMSIG00000005205 ##24	Gtf2h1 (ENSMSIG00000005013) #25	Hps5 (ENSMSIG00000004919) #27	ENSMSIG00000004906
Ryukyu mouse	MODERN SPECIES	16	Htatip2 (MGP_CAROLIEiJ_G0029789)	Dbx1 (MGP_CAROLIEiJ_G0029788)	Nav2 (MGP_CAROLIEiJ_G0029787)	E2f8 (MGP_CAROLIEiJ_G0029786)	Csrp3 (MGP_CAROLIEiJ_G0029785)	Zdhhc13 (MGP_CAROLIEiJ_G0029784)	Mrgprb3 (MGP_CAROLIEiJ_G0029783) ##15	Mrgprx2 (MGP_CAROLIEiJ_G0029782) ##15	Mrgprb1 (MGP_CAROLIEiJ_G0029781) ##15	Mrgprb8 (MGP_CAROLIEiJ_G0029780) ##15	Mrgprx1 (MGP_CAROLIEiJ_G0029779) ##15	Ptpn5 (MGP_CAROLIEiJ_G0029778) #16	Tmem86a (MGP_CAROLIEiJ_G0029777) #17	Spty2d1 (MGP_CAROLIEiJ_G0029776) #18	MGP_CAROLIEiJ_G0029775	Uevld (MGP_CAROLIEiJ_G0029774) #21	Tsg101 (MGP_CAROLIEiJ_G0029773) #22	MGP_CAROLIEiJ_G0029772 #23	Ldha (MGP_CAROLIEiJ_G0029771) ##24	Gtf2h1 (MGP_CAROLIEiJ_G0029770) #25	Hps5 (MGP_CAROLIEiJ_G0029769) #27	MGP_CAROLIEiJ_G0029768	MGP_CAROLIEiJ_G0029767	Saa4 (MGP_CAROLIEiJ_G0029766)	Saa3 (MGP_CAROLIEiJ_G0029765)	Saal1 (MGP_CAROLIEiJ_G0029764)	Tph1 (MGP_CAROLIEiJ_G0029763)	Sergef (MGP_CAROLIEiJ_G0029762)	Kcnc1 (MGP_CAROLIEiJ_G0029761)	Myod1 (MGP_CAROLIEiJ_G0029760)	Otog (MGP_CAROLIEiJ_G0029759)
Shrew mouse	MODERN SPECIES		Htatip2 (MGP_PahariEiJ_G0013014)	Dbx1 (MGP_PahariEiJ_G0013013)	Nav2 (MGP_PahariEiJ_G0013012)	E2f8 (MGP_PahariEiJ_G0013011)	Csrp3 (MGP_PahariEiJ_G0013010)	Zdhhc13 (MGP_PahariEiJ_G0013009)	Mrgprb3 (MGP_PahariEiJ_G0013008) ##15	Mrgprb2 (MGP_PahariEiJ_G0013007) ##15	MGP_PahariEiJ_G0013006	MGP_PahariEiJ_G0013005 ##15	MGP_PahariEiJ_G0013004 ##15	Ptpn5 (MGP_PahariEiJ_G0013003) #16	Tmem86a (MGP_PahariEiJ_G0013002) #17	Spty2d1 (MGP_PahariEiJ_G0013001) #18	MGP_PahariEiJ_G0013000	Uevld (MGP_PahariEiJ_G0012999) #21	Tsg101 (MGP_PahariEiJ_G0012998) #22	Ldhc (MGP_PahariEiJ_G0012997) #23	MGP_PahariEiJ_G0012996 ##24	Gtf2h1 (MGP_PahariEiJ_G0012995) #25	Hps5 (MGP_PahariEiJ_G0012994) #27	MGP_PahariEiJ_G0012993	MGP_PahariEiJ_G0012992	Saa4 (MGP_PahariEiJ_G0012991)	Saa3 (MGP_PahariEiJ_G0012990)	Saal1 (MGP_PahariEiJ_G0012989)	Tph1 (MGP_PahariEiJ_G0012988)	MGP_PahariEiJ_G0012987	Kcnc1 (MGP_PahariEiJ_G0012986)	Myod1 (MGP_PahariEiJ_G0012985)	Otog (MGP_PahariEiJ_G0012984)
Rat	MODERN SPECIES		Mrgprx2l (ENSRNOG00000022729) ##15	ENSRNOG00000068609	LOC120093062 (ENSRNOG00000064044) ##15	Mrgprb13-ps2 (ENSRNOG00000070585) ##15	Mrgprb13 (ENSRNOG00000064327) ##15	Mrgprb5 (ENSRNOG00000022703) ##15	ENSRNOG00000064833	Mrgprb4 (ENSRNOG00000033021) ##15	Mrgprx1 (ENSRNOG00000014242) ##15	Mrgprx3 (ENSRNOG00000014227) #15	Ptpn5 (ENSRNOG00000013981) #16	Tmem86a (ENSRNOG00000013663) #17	AABR07003273.1 (ENSRNOG00000050257)	Spty2d1 (ENSRNOG00000070392) #18	LOC100911574 (ENSRNOG00000066101) #20	Uevld (ENSRNOG00000013624) #21	Tsg101 (ENSRNOG00000013381) #22	Ldhc (ENSRNOG00000013103) #23	Ldha (ENSRNOG00000013009) ##24	Gtf2h1 (ENSRNOG00000012360) #25	Saa4 (ENSRNOG00000055531) #27	Saal1 (ENSRNOG00000011895)	Tph1 (ENSRNOG00000011672)	Sergef (ENSRNOG00000011488)	Kcnc1 (ENSRNOG00000055401)	Myod1 (ENSRNOG00000011306)	Otog (ENSRNOG00000010983)	Ush1c (ENSRNOG00000021149)	Abcc8 (ENSRNOG00000021130)	Kcnj11 (ENSRNOG00000021128)	Ncr3lg1 (ENSRNOG00000070704)
Upper Galilee mountains blind mole rat	MODERN SPECIES	765										Mrgprx1 (ENSNGAG00000002808) ##15	Ptpn5 (ENSNGAG00000012788) #16	Tmem86a (ENSNGAG00000016657) #17	ENSNGAG00000007901	ENSNGAG00000018377	Misfa (ENSNGAG00000016983) #20	Uevld (ENSNGAG00000022777) #21	Tsg101 (ENSNGAG00000014332) #22	Ldhc (ENSNGAG00000024361) #23	ENSNGAG00000013575 ##24	Gtf2h1 (ENSNGAG00000002626) #25	Hps5 (ENSNGAG00000005510) #27	ENSNGAG00000015160	ENSNGAG00000012157
Kangaroo rat	MODERN SPECIES	365	Prmt3 (ENSDORG00000005014)	Htatip2 (ENSDORG00000005011)	Dbx1 (ENSDORG00000009286)	Nav2 (ENSDORG00000004179)	E2f8 (ENSDORG00000000040)	Csrp3 (ENSDORG00000000039)	Zdhhc13 (ENSDORG00000000038)	Mrgprx1 (ENSDORG00000023393) ##15	ENSDORG00000025419 #15	ENSDORG00000027554 #15	Ptpn5 (ENSDORG00000005711) #16	Tmem86a (ENSDORG00000026848) #17	Spty2d1 (ENSDORG00000024232) #18	ENSDORG00000030236	Misfa (ENSDORG00000027621) #20	Uevld (ENSDORG00000005099) #21	Tsg101 (ENSDORG00000013773) #22	Ldhc (ENSDORG00000003526) #23	ENSDORG00000003524 ##24	ENSDORG00000004145 #25	ENSDORG00000027902 #27
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Hystricomorpha	ANCESTRAL SPECIES	5									ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248165	ENSGT00940000164956	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.b.b.a ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000048127 ##15	ENSHGLG00000041424 ##15	ENSHGLG00000046737 ##15	ENSHGLG00000035050 #15	ENSHGLG00000004153	ENSHGLG00000039941 #15	ENSHGLG00000038400	ENSHGLG00000009118 #16	ENSHGLG00000008779	TMEM86A (ENSHGLG00000048247) #17	ENSHGLG00000046693	ENSHGLG00000008282	ENSHGLG00000035318	ENSHGLG00000048762	ENSHGLG00000046195 #20	UEVLD (ENSHGLG00000008452) #21	TSG101 (ENSHGLG00000013227) #22	LDHC (ENSHGLG00000015435) #23	ENSHGLG00000015168 ##24	ENSHGLG00000015129 #25	HPS5 (ENSHGLG00000010391) #27	SAA4 (ENSHGLG00000042878)	ENSHGLG00000039519	SAAL1 (ENSHGLG00000007181)	TPH1 (ENSHGLG00000033079)	SERGEF (ENSHGLG00000005775)	KCNC1 (ENSHGLG00000005420)	MYOD1 (ENSHGLG00000004984)	ENSHGLG00000006891	USH1C (ENSHGLG00000010904)	ABCC8 (ENSHGLG00000008993)
Hystricomorpha_a	ANCESTRAL SPECIES	47										ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000248165	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.b.b.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Hystricomorpha_b	ANCESTRAL SPECIES	5										ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01090000262692	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.e ##24	ENSGT00390000015066 #25	ENSGT00940000170775 #26	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Long-tailed chinchilla	MODERN SPECIES	121									ENSCLAG00000017259 #15	ENSCLAG00000017279	PTPN5 (ENSCLAG00000016396) #16	TMEM86A (ENSCLAG00000017173) #17	SPTY2D1 (ENSCLAG00000017224) #18	ENSCLAG00000017004	ENSCLAG00000017270 #20	UEVLD (ENSCLAG00000017090) #21	TSG101 (ENSCLAG00000017169) #22	LDHC (ENSCLAG00000017086) #23	ENSCLAG00000017061 ##24	GTF2H1 (ENSCLAG00000016966) #25	HPS5 (ENSCLAG00000017249) #27	SAA4 (ENSCLAG00000016977)	ENSCLAG00000016741	SAAL1 (ENSCLAG00000017121)	TPH1 (ENSCLAG00000017233)	SERGEF (ENSCLAG00000016819)	KCNC1 (ENSCLAG00000017208)	MYOD1 (ENSCLAG00000016988)	OTOG (ENSCLAG00000017199)	USH1C (ENSCLAG00000017070)	ABCC8 (ENSCLAG00000017273)
Guinea pig	MODERN SPECIES	215									ENSCPOG00000037848 ##15	ENSCPOG00000003861 #15	PTPN5 (ENSCPOG00000011812) #16	TMEM86A (ENSCPOG00000035510) #17	SPTY2D1 (ENSCPOG00000012002) #18	ENSCPOG00000034821	ENSCPOG00000035484 #20	UEVLD (ENSCPOG00000011997) #21	ENSCPOG00000027522	TSG101 (ENSCPOG00000011994) #22	LDHC (ENSCPOG00000011926) #23	LDHA (ENSCPOG00000031440) ##24	GTF2H1 (ENSCPOG00000004348) #25	HPS5 (ENSCPOG00000004341) #27
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A
Marmotini	ANCESTRAL SPECIES	22	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.t.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a.a.a ##15	ENSGT01030000234639.A.b.a.b.a.b.b.t.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242859	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Marmotini_b	ANCESTRAL SPECIES	61						ENSGT01030000234639.A.b.a.b.a.b.a.a.b.a.a.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.b ##15	ENSGT01030000234639.A.b.a.b.a.b.a.a.a.b.a ##15	ENSGT01030000234639.A.b.a.b.a.b.a.b #15	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01040000242859	ENSGT00970000193605 #20	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l.f.a.a.a.a ##24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00900000143156.a	ENSGT01090000260040.a.a.a.r	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Arctic ground squirrel	MODERN SPECIES	621							ENSUPAG00010010725 ##15	ENSUPAG00010010717 ##15	ENSUPAG00010010710	ENSUPAG00010010705 #15	PTPN5 (ENSUPAG00010010679) #16	IGSF22 (ENSUPAG00010010659)	TMEM86A (ENSUPAG00010010657) #17	ENSUPAG00010010643	ENSUPAG00010010639 #20	UEVLD (ENSUPAG00010010594) #21	TSG101 (ENSUPAG00010010565) #22	LDHC (ENSUPAG00010010550) #23	ENSUPAG00010010535 ##24	GTF2H1 (ENSUPAG00010010513) #25	HPS5 (ENSUPAG00010010479) #27
Squirrel	MODERN SPECIES	128					ENSSTOG00000026033 ##15	ENSSTOG00000030069 ##15	ENSSTOG00000032510 ##15	ENSSTOG00000032916 ##15	ENSSTOG00000032362	ENSSTOG00000025927 #15	PTPN5 (ENSSTOG00000000962) #16	TMEM86A (ENSSTOG00000001110) #17	SPTY2D1 (ENSSTOG00000009291) #18	ENSSTOG00000032201	ENSSTOG00000032227 #20	UEVLD (ENSSTOG00000009271) #21	TSG101 (ENSSTOG00000024403) #22	LDHC (ENSSTOG00000032003) #23	ENSSTOG00000000014 ##24	ENSSTOG00000033703	GTF2H1 (ENSSTOG00000000013) #25	HPS5 (ENSSTOG00000000011) #27	ENSSTOG00000000012	ENSSTOG00000022064	SAAL1 (ENSSTOG00000003419)	ENSSTOG00000031021	TPH1 (ENSSTOG00000003404)	SERGEF (ENSSTOG00000003395)	KCNC1 (ENSSTOG00000019519)	MYOD1 (ENSSTOG00000011556)	OTOG (ENSSTOG00000025595)
Alpin marmot	MODERN SPECIES	3	ZDHHC13 (ENSMMMG00000005601)	ENSMMMG00000005582 ##15	ENSMMMG00000005573 ##15	ENSMMMG00000005563 ##15	ENSMMMG00000005501 ##15	ENSMMMG00000005493 ##15	ENSMMMG00000005471 ##15	ENSMMMG00000005461	ENSMMMG00000005438 ##15	ENSMMMG00000005434 #15	PTPN5 (ENSMMMG00000005398) #16	TMEM86A (ENSMMMG00000005376) #17	SPTY2D1 (ENSMMMG00000005363) #18	ENSMMMG00000005356	ENSMMMG00000005344 #20	UEVLD (ENSMMMG00000005312) #21	TSG101 (ENSMMMG00000005296) #22	ENSMMMG00000005255 #23	ENSMMMG00000005208 ##24	GTF2H1 (ENSMMMG00000005016) #25	HPS5 (ENSMMMG00000004900) #27	SAA4 (ENSMMMG00000004885)	ENSMMMG00000004876	SAAL1 (ENSMMMG00000004860)	ENSMMMG00000004842	TPH1 (ENSMMMG00000004814)	SERGEF (ENSMMMG00000004759)	ENSMMMG00000004750	KCNC1 (ENSMMMG00000004744)	MYOD1 (ENSMMMG00000004739)	ENSMMMG00000004715
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005013527 ##15	ENSSVLG00005013618	ENSSVLG00005013656 ##15	ENSSVLG00005013725	ENSSVLG00005013794 ##15	ENSSVLG00005013852 ##15	ENSSVLG00005013891 ##15	ENSSVLG00005013942 ##15	ENSSVLG00005014019	ENSSVLG00005014064 #15	PTPN5 (ENSSVLG00005014173) #16	IGSF22 (ENSSVLG00005014642)	TMEM86A (ENSSVLG00005014883) #17	SPTY2D1 (ENSSVLG00005014914) #18	ENSSVLG00005014961	UEVLD (ENSSVLG00005015052) #21	TSG101 (ENSSVLG00005015216) #22	LDHC (ENSSVLG00005015342) #23	ENSSVLG00005015754 ##24	GTF2H1 (ENSSVLG00005016086) #25	HPS5 (ENSSVLG00005004813) #27	ENSSVLG00005004846	ENSSVLG00005004866	ENSSVLG00005004896	SAA4 (ENSSVLG00005004914)	ENSSVLG00005004937	SAAL1 (ENSSVLG00005004983)	TPH1 (ENSSVLG00005005094)	SERGEF (ENSSVLG00005005160)	KCNC1 (ENSSVLG00005005188)	MYOD1 (ENSSVLG00005005222)
Lagomorpha	ANCESTRAL SPECIES	4	ENSGT00940000155692	ENSGT00810000125439.A	ENSGT00940000154963	ENSGT00940000156825	ENSGT00390000008184	ENSGT00950000183093.B	ENSGT00940000155663	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b ##15	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000161479 #23	ENSGT00940000153201.j.l #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.a	ENSGT00390000004737.b.a.o.a.b	ENSGT00390000004737.b.a.o.a.a.a.b	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Rabbit	MODERN SPECIES	466													TMEM86A (ENSOCUG00000003954) #17	SPTY2D1 (ENSOCUG00000025674) #18	MISFA (ENSOCUG00000038035)	UEVLD (ENSOCUG00000013952) #21	TSG101 (ENSOCUG00000013940) #22	LDHC (ENSOCUG00000027929) #23	ENSOCUG00000015939 #24	ENSOCUG00000017633 #25	HPS5 (ENSOCUG00000017624) #27	ENSOCUG00000021891	ENSOCUG00000017620	SAA4 (ENSOCUG00000024412)	ENSOCUG00000002424	SAAL1 (ENSOCUG00000002418)	SERGEF (ENSOCUG00000002409)	KCNC1 (ENSOCUG00000025304)	MYOD1 (ENSOCUG00000021405)	OTOG (ENSOCUG00000006205)	USH1C (ENSOCUG00000002028)
Pika	MODERN SPECIES	3556															SPTY2D1 (ENSOPRG00000014500) #18	UEVLD (ENSOPRG00000014486) #21	TSG101 (ENSOPRG00000014461) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01090000260017.c.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT00940000153201.j #24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a.a.b	ENSGT01100000263499.a.c.b.c.a.b.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164122	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT01030000235549	ENSGT00940000153201.i.a ##24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000160055	ENSGT00940000155948	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a.a.b.a	ENSGT01100000263499.a.c.b.c.a.b.a.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT00940000163242	ENSGT00940000161479 #23	ENSGT01030000235549	ENSGT00940000153201.i.a ##24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
Wallaby	MODERN SPECIES	5712																UEVLD (ENSMEUG00000016334) #21
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000154910.b.b	ENSGT00940000157791	ENSGT01100000263499.a.c.b.d	ENSGT01100000263499.a.c.b.c.a.a.a.a.b.a	ENSGT01100000263499.a.c.b.c.a.a.a.a.a.a.b	ENSGT01100000263499.a.c.b.c.a.a.a.b.a	ENSGT01100000263499.a.c.b.c.a.b.a.a.a	ENSGT01100000263499.a.c.b.c.a.b.a.b	ENSGT01100000263499.a.c.b.c.b	ENSGT00940000159916 #16	ENSGT00940000160123	ENSGT00390000007101.d.b #17	ENSGT00940000154133.A #18	ENSGT00940000164956	ENSGT01050000245084	ENSGT00940000153903.a.b.b #21	ENSGT00940000153903.a.a #22	ENSGT01030000235549.a.a	ENSGT00940000161479 #23	ENSGT01030000235549.a.b	ENSGT00940000153201.i.a.b ##24	ENSGT00390000015066.a #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626
koala	MODERN SPECIES	108	ENSPCIG00000035595	ENSPCIG00000036335	ENSPCIG00000022847	ENSPCIG00000032860	ENSPCIG00000014045	ENSPCIG00000036344	ENSPCIG00000036201	ENSPCIG00000037355	ENSPCIG00000035433	ENSPCIG00000036670	PTPN5 (ENSPCIG00000014018) #16	TMEM86A (ENSPCIG00000014011) #17	SPTY2D1 (ENSPCIG00000014008) #18	ENSPCIG00000037419	MISFA (ENSPCIG00000014006)	UEVLD (ENSPCIG00000014004) #21	TSG101 (ENSPCIG00000013997) #22	ENSPCIG00000013992	LDHC (ENSPCIG00000013990) #23	ENSPCIG00000013770 ##24	GTF2H1 (ENSPCIG00000013760) #25	HPS5 (ENSPCIG00000013753) #27	ENSPCIG00000033997	SAAL1 (ENSPCIG00000013745)	TPH1 (ENSPCIG00000013741)	ENSPCIG00000013737	KCNC1 (ENSPCIG00000013732)	MYOD1 (ENSPCIG00000018402)	USH1C (ENSPCIG00000013650)	ABCC8 (ENSPCIG00000013643)	ENSPCIG00000013127
Platypus	MODERN SPECIES	14	GPHA2 (ENSOANG00000038607)	PPP2R5B (ENSOANG00000044335)	ATG2A (ENSOANG00000043855)	EHD1 (ENSOANG00000050176)	CDC42BPG (ENSOANG00000008357)	MEN1 (ENSOANG00000049752)	MAP4K2 (ENSOANG00000009273)	SF1 (ENSOANG00000002909)	PYGM (ENSOANG00000013714)	RASGRP2 (ENSOANG00000007479)	NRXN2 (ENSOANG00000045579)	ENSOANG00000048677	ENSOANG00000039525 #16	TMEM86A (ENSOANG00000049158) #17	SPTY2D1 (ENSOANG00000051208) #18	UEVLD (ENSOANG00000050347) #21	TSG101 (ENSOANG00000008368) #22	ENSOANG00000008367 #24	LDHA (ENSOANG00000048733) #24	GTF2H1 (ENSOANG00000014982) #25	HPS5 (ENSOANG00000044228) #27	ENSOANG00000044149	ENSOANG00000000595	SAAL1 (ENSOANG00000000809)	ENSOANG00000000811	TPH1 (ENSOANG00000050270)	ENSOANG00000044323	KCNC1 (ENSOANG00000003052)	ENSOANG00000047737	OTOG (ENSOANG00000010676)	ENSOANG00000007679
Anura	ANCESTRAL SPECIES	163									ENSGT00940000160333	ENSGT00440000039564.a.b	ENSGT00940000153362.b	ENSGT00390000006347.a	ENSGT00940000159916 #16	ENSGT00390000007101.d.b #17	ENSGT00940000164956	ENSGT00940000153903.a.b.b #21	ENSGT00940000154133.A #18	ENSGT00940000153903.a.a #22	ENSGT00940000153201 #24	ENSGT00390000015066 #25	ENSGT00940000155818 #27	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490	ENSGT00950000183002.A	ENSGT00940000156626	ENSGT00990000203615.a.a.a.b	ENSGT00940000163348.e
Leishan spiny toad	MODERN SPECIES	1	TP53I11 (ENSLLEG00000028722)	TSPAN18 (ENSLLEG00000028755)	ENSLLEG00000028887	ENSLLEG00000029204	ENSLLEG00000029267	ENSLLEG00000029331	ENSLLEG00000029364	ENSLLEG00000029465	PTPN5 (ENSLLEG00000030009) #16	ENSLLEG00000030032	TMEM86A (ENSLLEG00000030039) #17	ENSLLEG00000030053	ENSLLEG00000030060	SPTY2D1 (ENSLLEG00000030067) #18	ENSLLEG00000008744	ENSLLEG00000009178 #21	LDHA (ENSLLEG00000009417) #24	GTF2H1 (ENSLLEG00000009515) #25	HPS5 (ENSLLEG00000009676) #27	ENSLLEG00000009816	SAAL1 (ENSLLEG00000009836)	TPH1 (ENSLLEG00000009964)	SERGEF (ENSLLEG00000010129)	ENSLLEG00000010621	MYOD1 (ENSLLEG00000010740)	ENSLLEG00000010818	ENSLLEG00000010952	ABCC8 (ENSLLEG00000011143)	KCNJ11 (ENSLLEG00000012239)	ENSLLEG00000012269	NDUFB7 (ENSLLEG00000012433)
Frog	MODERN SPECIES	4				SLC22A18 (ENSXETG00000049026)	PHLDA2 (ENSXETG00000043313)	nap1l4 (ENSXETG00000046400)	ENSXETG00000044838	cars1 (ENSXETG00000021868)	ENSXETG00000040706	PTPN5 (ENSXETG00000042778) #16	ENSXETG00000041841	ENSXETG00000047729	ENSXETG00000044019 #17	ENSXETG00000047278 #17	spty2d1 (ENSXETG00000043007)	uevld (ENSXETG00000008509) #21	ldha (ENSXETG00000041431) #24	tsg101 (ENSXETG00000046442) #22	ush1c (ENSXETG00000043793)	ENSXETG00000048951	ENSXETG00000044994	ENSXETG00000049215	OTOG (ENSXETG00000048795)	MYOD1 (ENSXETG00000046866)	kcnc1 (ENSXETG00000014391)	sergef (ENSXETG00000014410)	ENSXETG00000042377	ENSXETG00000048806	saal1 (ENSXETG00000018990)	gtf2h1 (ENSXETG00000018992) #25	abcc8 (ENSXETG00000046120)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153903.b ##21
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153903.b ##21
Elephant shark	MODERN SPECIES	1493	ENSCMIG00000011640	pgghg (ENSCMIG00000011596)	ENSCMIG00000011568	ENSCMIG00000011558	sdhaf2 (ENSCMIG00000011551)	ENSCMIG00000011545	tmem216 (ENSCMIG00000011541)	tmem138 (ENSCMIG00000011537)	armc7 (ENSCMIG00000011533)	cyb561a3a (ENSCMIG00000011531)	ddb1 (ENSCMIG00000011520)	cox6a2 (ENSCMIG00000011512)	ENSCMIG00000011509	ENSCMIG00000011503	TIGD4 (ENSCMIG00000011497)	ENSCMIG00000011492 ##21	ldha (ENSCMIG00000011394) #24	uevld (ENSCMIG00000011350) #21	gtf2h1 (ENSCMIG00000011322) #25	ENSCMIG00000011312 #27	ENSCMIG00000011307 #27	ENSCMIG00000011302	ENSCMIG00000011299	ENSCMIG00000011297 #27	saal1 (ENSCMIG00000011294)	tph1a (ENSCMIG00000011275)	kcnc1b (ENSCMIG00000011259)	ENSCMIG00000011252	cd81a (ENSCMIG00000011243)	ANO9 (ENSCMIG00000011230)	TSSC4 (ENSCMIG00000011227)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153903.b ##21
Lamprey	MODERN SPECIES	2922																ENSPMAG00000006203 ##21
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153903 #21
Ciona intestinalis	MODERN SPECIES	47											ENSCING00000021664	ENSCING00000024948	ENSCING00000020886	ENSCING00000024172	ENSCING00000013096	ENSCING00000021102 #21	ENSCING00000013094	ENSCING00000008186	ENSCING00000020554	ENSCING00000017924