Chordata	ANCESTRAL SPECIES																	ENSGT00940000153766.A #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153766.A #22
Gnathostomata	ANCESTRAL SPECIES	948														ENSGT00390000002970	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22
Euteleostomi	ANCESTRAL SPECIES	86		ENSGT00950000182834.B	ENSGT00940000153634.b	ENSGT00950000182834.A.a.b.c	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000165801	ENSGT00940000157376	ENSGT00390000018505	ENSGT00390000002210.d	ENSGT00940000170165	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00390000001216 #32	ENSGT00940000153954 #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000165109	ENSGT00940000164764	ENSGT00950000183209.b.a.a	ENSGT00390000003866.a.a
Sarcopterygii	ANCESTRAL SPECIES	478															ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27
Tetrapoda	ANCESTRAL SPECIES	185									ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27
Amniota	ANCESTRAL SPECIES	12	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a #7	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954 #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00530000064271
Theria	ANCESTRAL SPECIES	4	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a #7	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954 #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00530000064271
Eutheria	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Glires	ANCESTRAL SPECIES	5	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Muroidea	ANCESTRAL SPECIES	42	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Murinae	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Mus	ANCESTRAL SPECIES	16	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Mus_A	ANCESTRAL SPECIES	10	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Mus_B	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Mus_C	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
spretus	MODERN SPECIES	8	Hsp90ab1 (MGP_SPRETEiJ_G0022560) #7	Slc29a1 (MGP_SPRETEiJ_G0022561) #8	Mymx (MGP_SPRETEiJ_G0022562) #9	Capn11 (MGP_SPRETEiJ_G0022563) #10	Tmem63b (MGP_SPRETEiJ_G0022564) #11	Mrpl14 (MGP_SPRETEiJ_G0022565) #12	1600014C23Rik (MGP_SPRETEiJ_G0022566) #13	Vegfa (MGP_SPRETEiJ_G0022567) #14	Mrps18a (MGP_SPRETEiJ_G0022568) #15	Rsph9 (MGP_SPRETEiJ_G0022569) #16	Mad2l1bp (MGP_SPRETEiJ_G0022570) #17	Gtpbp2 (MGP_SPRETEiJ_G0022571) #18	Polh (MGP_SPRETEiJ_G0022572) #19	Xpo5 (MGP_SPRETEiJ_G0022573) #20	Polr1c (MGP_SPRETEiJ_G0022574) #21	Yipf3 (MGP_SPRETEiJ_G0022575) #22	Lrrc73 (MGP_SPRETEiJ_G0022576) #23	Tjap1 (MGP_SPRETEiJ_G0022577) #24	Dlk2 (MGP_SPRETEiJ_G0022578) #25	Abcc10 (MGP_SPRETEiJ_G0022579) #26	Zfp318 (MGP_SPRETEiJ_G0022580) #27	Crip3 (MGP_SPRETEiJ_G0022581) #28	Slc22a7 (MGP_SPRETEiJ_G0022582) #29	MGP_SPRETEiJ_G0022583 #30	Ttbk1 (MGP_SPRETEiJ_G0022584) #31	Dnph1 (MGP_SPRETEiJ_G0022585) #32	Cul9 (MGP_SPRETEiJ_G0022586) #33	Srf (MGP_SPRETEiJ_G0022587) #34	Ptk7 (MGP_SPRETEiJ_G0022588) #35	Klc4 (MGP_SPRETEiJ_G0022589) #36	Mrpl2 (MGP_SPRETEiJ_G0022590) #37
Steppe mouse	MODERN SPECIES	2906							ENSMSIG00000012779 #13	Vegfa (ENSMSIG00000012606) #14	Mrps18a (ENSMSIG00000012569) #15	Rsph9 (ENSMSIG00000012557) #16	Mad2l1bp (ENSMSIG00000012546) #17	Gtpbp2 (ENSMSIG00000012510) #18	Polh (ENSMSIG00000012488) #19	Xpo5 (ENSMSIG00000012426) #20	Polr1c (ENSMSIG00000012395) #21	Yipf3 (ENSMSIG00000012375) #22	Lrrc73 (ENSMSIG00000012347) #23	Tjap1 (ENSMSIG00000012119) #24	Dlk2 (ENSMSIG00000012088) #25	Abcc10 (ENSMSIG00000011931) #26	Zfp318 (ENSMSIG00000011902) #27	Crip3 (ENSMSIG00000011845) #28	Slc22a7 (ENSMSIG00000011832) #29	Ttbk1 (ENSMSIG00000011787) #31	ENSMSIG00000011778 #32	Cul9 (ENSMSIG00000011560) #33	Srf (ENSMSIG00000011548) #34	Ptk7 (ENSMSIG00000011532) #35	Klc4 (ENSMSIG00000011494) #36	Mrpl2 (ENSMSIG00000011453) #37	Cul7 (ENSMSIG00000011412) ##33
Mouse	MODERN SPECIES	8	Hsp90ab1 (ENSMUSG00000023944) #7	Slc29a1 (ENSMUSG00000023942) #8	Mymx (ENSMUSG00000079471) #9	Capn11 (ENSMUSG00000058626) #10	Tmem63b (ENSMUSG00000036026) #11	Mrpl14 (ENSMUSG00000023939) #12	1600014C23Rik (ENSMUSG00000094690) #13	Vegfa (ENSMUSG00000023951) #14	Mrps18a (ENSMUSG00000023967) #15	Rsph9 (ENSMUSG00000023966) #16	Mad2l1bp (ENSMUSG00000034509) #17	Gtpbp2 (ENSMUSG00000023952) #18	Polh (ENSMUSG00000023953) #19	Xpo5 (ENSMUSG00000067150) #20	Polr1c (ENSMUSG00000067148) #21	Yipf3 (ENSMUSG00000071074) #22	Lrrc73 (ENSMUSG00000071073) #23	Tjap1 (ENSMUSG00000012296) #24	Dlk2 (ENSMUSG00000047428) #25	Abcc10 (ENSMUSG00000032842) #26	Zfp318 (ENSMUSG00000015597) #27	Crip3 (ENSMUSG00000023968) #28	Slc22a7 (ENSMUSG00000067144) #29	Ttbk1 (ENSMUSG00000015599) #31	Dnph1 (ENSMUSG00000040658) #32	Cul9 (ENSMUSG00000040327) #33	Srf (ENSMUSG00000015605) #34	Ptk7 (ENSMUSG00000023972) #35	Klc4 (ENSMUSG00000003546) #36	Mrpl2 (ENSMUSG00000002767) #37	Cul7 (ENSMUSG00000038545) ##33
Ryukyu mouse	MODERN SPECIES	8	Hsp90ab1 (MGP_CAROLIEiJ_G0021648) #7	Slc29a1 (MGP_CAROLIEiJ_G0021649) #8	MGP_CAROLIEiJ_G0021650 #9	Capn11 (MGP_CAROLIEiJ_G0021651) #10	Tmem63b (MGP_CAROLIEiJ_G0021652) #11	Mrpl14 (MGP_CAROLIEiJ_G0021653) #12	MGP_CAROLIEiJ_G0021654 #13	MGP_CAROLIEiJ_G0021655 #14	Mrps18a (MGP_CAROLIEiJ_G0021656) #15	Rsph9 (MGP_CAROLIEiJ_G0021657) #16	Mad2l1bp (MGP_CAROLIEiJ_G0021658) #17	Gtpbp2 (MGP_CAROLIEiJ_G0021659) #18	Polh (MGP_CAROLIEiJ_G0021660) #19	Xpo5 (MGP_CAROLIEiJ_G0021661) #20	Polr1c (MGP_CAROLIEiJ_G0021662) #21	Yipf3 (MGP_CAROLIEiJ_G0021663) #22	Lrrc73 (MGP_CAROLIEiJ_G0021664) #23	Tjap1 (MGP_CAROLIEiJ_G0021665) #24	Dlk2 (MGP_CAROLIEiJ_G0021666) #25	Abcc10 (MGP_CAROLIEiJ_G0021667) #26	Zfp318 (MGP_CAROLIEiJ_G0021668) #27	Crip3 (MGP_CAROLIEiJ_G0021669) #28	Slc22a7 (MGP_CAROLIEiJ_G0021670) #29	MGP_CAROLIEiJ_G0021671	Ttbk1 (MGP_CAROLIEiJ_G0021672) #31	Dnph1 (MGP_CAROLIEiJ_G0021673) #32	Cul9 (MGP_CAROLIEiJ_G0021674) #33	Srf (MGP_CAROLIEiJ_G0021675) #34	Ptk7 (MGP_CAROLIEiJ_G0021676) #35	Klc4 (MGP_CAROLIEiJ_G0021677) #36	Mrpl2 (MGP_CAROLIEiJ_G0021678) #37
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020640 ##7	Slc29a1 (MGP_PahariEiJ_G0020641) #8	MGP_PahariEiJ_G0020642 #9	Capn11 (MGP_PahariEiJ_G0020643) #10	Tmem63b (MGP_PahariEiJ_G0020644) #11	Mrpl14 (MGP_PahariEiJ_G0020645) #12	1600014C23Rik (MGP_PahariEiJ_G0020646) #13	Vegfa (MGP_PahariEiJ_G0020647) #14	Mrps18a (MGP_PahariEiJ_G0020648) #15	Rsph9 (MGP_PahariEiJ_G0020649) #16	Mad2l1bp (MGP_PahariEiJ_G0020650) #17	Gtpbp2 (MGP_PahariEiJ_G0020651) #18	Polh (MGP_PahariEiJ_G0020652) #19	Xpo5 (MGP_PahariEiJ_G0020653) #20	Polr1c (MGP_PahariEiJ_G0020654) #21	Yipf3 (MGP_PahariEiJ_G0020655) #22	Lrrc73 (MGP_PahariEiJ_G0020656) #23	MGP_PahariEiJ_G0020657	Dlk2 (MGP_PahariEiJ_G0020658) #25	Abcc10 (MGP_PahariEiJ_G0020659) #26	Zfp318 (MGP_PahariEiJ_G0020660) #27	MGP_PahariEiJ_G0020661 #28	Slc22a7 (MGP_PahariEiJ_G0020662) #29	Ttbk1 (MGP_PahariEiJ_G0020663) #31	Dnph1 (MGP_PahariEiJ_G0020664) #32	Cul9 (MGP_PahariEiJ_G0020665) #33	Srf (MGP_PahariEiJ_G0020666) #34	Ptk7 (MGP_PahariEiJ_G0020667) #35	Klc4 (MGP_PahariEiJ_G0020668) #36	Mrpl2 (MGP_PahariEiJ_G0020669) #37	Cul7 (MGP_PahariEiJ_G0020670) ##33
Rat	MODERN SPECIES	19	Slc29a1 (ENSRNOG00000019752) #8	Mymx (ENSRNOG00000042497) #9	Capn11 (ENSRNOG00000026025) #10	Tmem63b (ENSRNOG00000019743) #11	Mrpl14 (ENSRNOG00000019734) #12	Aars2 (ENSRNOG00000025808)	Vegfa (ENSRNOG00000019598) #14	Mrps18a (ENSRNOG00000019511) #15	Rsph9 (ENSRNOG00000019474) #16	Mad2l1bp (ENSRNOG00000019463) #17	Rps2-ps6 (ENSRNOG00000022934)	Gtpbp2 (ENSRNOG00000019332) #18	Polh (ENSRNOG00000019195) #19	Xpo5 (ENSRNOG00000019085) #20	Polr1c (ENSRNOG00000019079) #21	Yipf3 (ENSRNOG00000018998) #22	Lrrc73 (ENSRNOG00000039856) #23	Tjap1 (ENSRNOG00000018980)	Dlk2 (ENSRNOG00000018949) #25	Abcc10 (ENSRNOG00000018863) #26	Zfp318 (ENSRNOG00000018741) #27	Crip3 (ENSRNOG00000018613) #28	Slc22a7 (ENSRNOG00000018420) #29	Ttbk1 (ENSRNOG00000018416) #31	Dnph1 (ENSRNOG00000018397) #32	Cul9 (ENSRNOG00000018372) #33	Srf (ENSRNOG00000018232) #34	Ptk7 (ENSRNOG00000039976) #35	Klc4 (ENSRNOG00000018168) #36	Mrpl2 (ENSRNOG00000018057) #37	Cul7 (ENSRNOG00000017857) ##33
Cricetidae	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f.a ##33
Cricetinae	ANCESTRAL SPECIES	28	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f.a ##33
Chinese hamster chok1gshd	MODERN SPECIES	184	Mdfi (ENSCGRG00001012532)	Tfeb (ENSCGRG00001012215)	Pgc (ENSCGRG00001020240)	Frs3 (ENSCGRG00001017194)	Prickle4 (ENSCGRG00001021444)	Tomm6 (ENSCGRG00001023467)	Usp49 (ENSCGRG00001017792)	Med20 (ENSCGRG00001018311)	ENSCGRG00001022668	Rsph9 (ENSCGRG00001023633) #16	ENSCGRG00001000765 #17	Gtpbp2 (ENSCGRG00001006422) #18	Polh (ENSCGRG00001013398) #19	Xpo5 (ENSCGRG00001010034) #20	Polr1c (ENSCGRG00001017533) #21	Yipf3 (ENSCGRG00001020265) #22	Lrrc73 (ENSCGRG00001018661) #23	Tjap1 (ENSCGRG00001020623) #24	Dlk2 (ENSCGRG00001003035) #25	Abcc10 (ENSCGRG00001021477) #26	Zfp318 (ENSCGRG00001000676) #27	Crip3 (ENSCGRG00001019575) #28	Slc22a7 (ENSCGRG00001000068) #29	Ttbk1 (ENSCGRG00001012675) #31	DNPH1 (ENSCGRG00001016615) #32	Cul9 (ENSCGRG00001021627) #33	Srf (ENSCGRG00001015130) #34	Ptk7 (ENSCGRG00001019336) #35	Klc4 (ENSCGRG00001014841) #36	Mrpl2 (ENSCGRG00001022895) #37	Cul7 (ENSCGRG00001018296) ##33
Golden Hamster	MODERN SPECIES	649	ENSMAUG00000010907	Nfkbie (ENSMAUG00000012047)	Slc35b2 (ENSMAUG00000017236)	Hsp90ab1 (ENSMAUG00000018422) #7	Slc29a1 (ENSMAUG00000006341) #8	Capn11 (ENSMAUG00000001798) #10	Tmem63b (ENSMAUG00000007946) #11	Mrpl14 (ENSMAUG00000017756) #12	Vegfa (ENSMAUG00000007292) #14	Rsph9 (ENSMAUG00000010828) #16	Mad2l1bp (ENSMAUG00000011492) #17	Gtpbp2 (ENSMAUG00000011899) #18	Polh (ENSMAUG00000009711) #19	Xpo5 (ENSMAUG00000011670) #20	Polr1c (ENSMAUG00000014329) #21	Yipf3 (ENSMAUG00000019181) #22	Lrrc73 (ENSMAUG00000019479) #23	Tjap1 (ENSMAUG00000000201) #24	Dlk2 (ENSMAUG00000005674) #25	Abcc10 (ENSMAUG00000008720) #26	Zfp318 (ENSMAUG00000016068) #27	Crip3 (ENSMAUG00000018230) #28	Slc22a7 (ENSMAUG00000003584) #29	Ttbk1 (ENSMAUG00000008529) #31	Dnph1 (ENSMAUG00000003688) #32	Cul9 (ENSMAUG00000010584) #33	Srf (ENSMAUG00000018159) #34	Ptk7 (ENSMAUG00000000440) #35	Klc4 (ENSMAUG00000000606) #36	Mrpl2 (ENSMAUG00000008326) #37	Cul7 (ENSMAUG00000015878) ##33
Cricetidae_B	ANCESTRAL SPECIES	32	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00860000135742 #13	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f.a ##33
Prairie vole	MODERN SPECIES	352	Adgrf4 (ENSMOCG00000007247)	Opn5 (ENSMOCG00000015157)	Ptchd4 (ENSMOCG00000009170)	Mmut (ENSMOCG00000006660)	Cenpq (ENSMOCG00000020003)	Glyatl3 (ENSMOCG00000010563)	Rhag (ENSMOCG00000017965)	Crisp2 (ENSMOCG00000015071)	ENSMOCG00000007214	ENSMOCG00000006213	Mad2l1bp (ENSMOCG00000010147) #17	Gtpbp2 (ENSMOCG00000014945) #18	Polh (ENSMOCG00000014193) #19	Xpo5 (ENSMOCG00000016105) #20	Polr1c (ENSMOCG00000017549) #21	Yipf3 (ENSMOCG00000013556) #22	Lrrc73 (ENSMOCG00000013005) #23	Tjap1 (ENSMOCG00000019758) #24	Dlk2 (ENSMOCG00000010846) #25	ENSMOCG00000011089 #26	ENSMOCG00000003424 #26	ENSMOCG00000019472 #26	Zfp318 (ENSMOCG00000017163) #27	Crip3 (ENSMOCG00000016524) #28	Slc22a7 (ENSMOCG00000019817) #29	Ttbk1 (ENSMOCG00000017960) #31	Dnph1 (ENSMOCG00000016980) #32	Cul9 (ENSMOCG00000012664) #33	Srf (ENSMOCG00000018008) #34	Ptk7 (ENSMOCG00000006889) #35	Klc4 (ENSMOCG00000001647) #36
Northern American deer mouse	MODERN SPECIES	13	Slc35b2 (ENSPEMG00000010433)	ENSPEMG00000020801 #7	Slc29a1 (ENSPEMG00000012099) #8	Mymx (ENSPEMG00000031136) #9	Capn11 (ENSPEMG00000016267) #10	Tmem63b (ENSPEMG00000020790) #11	ENSPEMG00000007451 #12	Vegfa (ENSPEMG00000023496) #14	Mrps18a (ENSPEMG00000000405) #15	Rsph9 (ENSPEMG00000011206) #16	Mad2l1bp (ENSPEMG00000003113) #17	Gtpbp2 (ENSPEMG00000021976) #18	Polh (ENSPEMG00000014884) #19	Xpo5 (ENSPEMG00000020387) #20	Polr1c (ENSPEMG00000006970) #21	Yipf3 (ENSPEMG00000013680) #22	Lrrc73 (ENSPEMG00000010422) #23	Tjap1 (ENSPEMG00000000063) #24	Dlk2 (ENSPEMG00000014891) #25	Abcc10 (ENSPEMG00000008293) #26	ENSPEMG00000024236 #27	Crip3 (ENSPEMG00000015270) #28	Slc22a7 (ENSPEMG00000010267) #29	Ttbk1 (ENSPEMG00000023732) #31	Dnph1 (ENSPEMG00000017242) #32	Cul9 (ENSPEMG00000023429) #33	Srf (ENSPEMG00000024074) #34	Ptk7 (ENSPEMG00000008577) #35	Klc4 (ENSPEMG00000013017) #36	Mrpl2 (ENSPEMG00000009477) #37	ENSPEMG00000029429 ##33
Upper Galilee mountains blind mole rat	MODERN SPECIES	633	Nfkbie (ENSNGAG00000021559)	Slc35b2 (ENSNGAG00000016794)	Hsp90ab1 (ENSNGAG00000017929) #7	Slc29a1 (ENSNGAG00000021923) #8	Capn11 (ENSNGAG00000007388) #10	Tmem63b (ENSNGAG00000014742) #11	Mrpl14 (ENSNGAG00000016826) #12	Vegfa (ENSNGAG00000018293) #14	Mrps18a (ENSNGAG00000020052) #15	Rsph9 (ENSNGAG00000020871) #16	Mad2l1bp (ENSNGAG00000021195) #17	Gtpbp2 (ENSNGAG00000021674) #18	Polh (ENSNGAG00000022986) #19	Xpo5 (ENSNGAG00000015950) #20	Polr1c (ENSNGAG00000023487) #21	Yipf3 (ENSNGAG00000023784) #22	Lrrc73 (ENSNGAG00000023998) #23	Tjap1 (ENSNGAG00000001708) #24	Dlk2 (ENSNGAG00000010416) #25	ENSNGAG00000013794 #26	ENSNGAG00000016294 #26	ENSNGAG00000007514 #26	ENSNGAG00000013729 #27	Crip3 (ENSNGAG00000016800) #28	Slc22a7 (ENSNGAG00000021459) #29	ENSNGAG00000022106 #31	Dnph1 (ENSNGAG00000023055) #32	Cul9 (ENSNGAG00000014662) #33	Srf (ENSNGAG00000002363) #34	Ptk7 (ENSNGAG00000007758) #35	Klc4 (ENSNGAG00000013283) #36
Lesser Egyptian jerboa	MODERN SPECIES	41	Slc35b2 (ENSJJAG00000020418)	Hsp90ab1 (ENSJJAG00000018744) #7	ENSJJAG00000021418 #8	Mymx (ENSJJAG00000013992) #9	Capn11 (ENSJJAG00000023762) #10	Tmem63b (ENSJJAG00000021961) #11	Mrpl14 (ENSJJAG00000021477) #12	Vegfa (ENSJJAG00000007689) #14	Mrps18a (ENSJJAG00000006567) #15	Rsph9 (ENSJJAG00000019847) #16	Mad2l1bp (ENSJJAG00000022925) #17	Gtpbp2 (ENSJJAG00000023430) #18	Polh (ENSJJAG00000013744) #19	Xpo5 (ENSJJAG00000009521) #20	Polr1c (ENSJJAG00000023110) #21	Yipf3 (ENSJJAG00000021863) #22	Lrrc73 (ENSJJAG00000022553) #23	ENSJJAG00000000504	Dlk2 (ENSJJAG00000013128) #25	Abcc10 (ENSJJAG00000023168) #26	Zfp318 (ENSJJAG00000018552) #27	Crip3 (ENSJJAG00000011758) #28	Slc22a7 (ENSJJAG00000013095) #29	ENSJJAG00000019825 #31	ENSJJAG00000022638 #32	Cul9 (ENSJJAG00000012861) #33	Srf (ENSJJAG00000021937) #34	Ptk7 (ENSJJAG00000015230) #35	Klc4 (ENSJJAG00000015105) #36	Mrpl2 (ENSJJAG00000009715) #37	Cul7 (ENSJJAG00000010201) ##33
Kangaroo rat	MODERN SPECIES	363	Hsp90ab1 (ENSDORG00000010981) #7	ENSDORG00000006421	Capn11 (ENSDORG00000026068) #10	Tmem63b (ENSDORG00000008237) #11	Mrpl14 (ENSDORG00000008236) #12	ENSDORG00000025211	ENSDORG00000027181 #14	ENSDORG00000023174 #14	Mrps18a (ENSDORG00000014583) #15	Rsph9 (ENSDORG00000014581) #16	Mad2l1bp (ENSDORG00000027056) #17	Gtpbp2 (ENSDORG00000000443) #18	Polh (ENSDORG00000000441) #19	Xpo5 (ENSDORG00000000432) #20	Polr1c (ENSDORG00000000429) #21	Yipf3 (ENSDORG00000000424) #22	Lrrc73 (ENSDORG00000023671) #23	Tjap1 (ENSDORG00000000420) #24	Dlk2 (ENSDORG00000001159) #25	Abcc10 (ENSDORG00000001157) #26	Zfp318 (ENSDORG00000010890) #27	Crip3 (ENSDORG00000010889) #28	Slc22a7 (ENSDORG00000010888) #29	ENSDORG00000010886 #31	ENSDORG00000026406 #32	Cul9 (ENSDORG00000002811) #33	Srf (ENSDORG00000000859) #34	Ptk7 (ENSDORG00000012193) #35	Klc4 (ENSDORG00000012190) #36	Mrpl2 (ENSDORG00000012189) #37	Rrp36 (ENSDORG00000012186)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Marmotini	ANCESTRAL SPECIES	18	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00960000190714	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812.h #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00960000190714	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812.h #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Arctic ground squirrel	MODERN SPECIES	25											MAD2L1BP (ENSUPAG00010018636) #17	GTPBP2 (ENSUPAG00010018626) #18	POLH (ENSUPAG00010018589) #19	XPO5 (ENSUPAG00010018556) #20	POLR1C (ENSUPAG00010018540) #21	YIPF3 (ENSUPAG00010018525) #22	LRRC73 (ENSUPAG00010018517) #23	TJAP1 (ENSUPAG00010018437) #24	DLK2 (ENSUPAG00010018412) #25	ABCC10 (ENSUPAG00010018361) #26	ZNF318 (ENSUPAG00010018340) #27	CRIP3 (ENSUPAG00010018305) #28	SLC22A7 (ENSUPAG00010018280) #29	TTBK1 (ENSUPAG00010018241) #31	DNPH1 (ENSUPAG00010018235) #32	ENSUPAG00010018229 #33	ENSUPAG00010018129 #33	SRF (ENSUPAG00010018113) #34	PTK7 (ENSUPAG00010018092) #35	KLC4 (ENSUPAG00010018084) #36	MRPL2 (ENSUPAG00010018077) #37
Squirrel	MODERN SPECIES	76	SLC35B2 (ENSSTOG00000026446)	HSP90AB1 (ENSSTOG00000024614) #7	SLC29A1 (ENSSTOG00000003337) #8	MYMX (ENSSTOG00000030271) #9	CAPN11 (ENSSTOG00000003304) #10	TMEM63B (ENSSTOG00000007096) #11	MRPL14 (ENSSTOG00000004549) #12	VEGFA (ENSSTOG00000008877) #14	MRPS18A (ENSSTOG00000004490) #15	RSPH9 (ENSSTOG00000028063) #16	MAD2L1BP (ENSSTOG00000028891) #17	GTPBP2 (ENSSTOG00000021274) #18	POLH (ENSSTOG00000010681) #19	XPO5 (ENSSTOG00000020172) #20	POLR1C (ENSSTOG00000010631) #21	YIPF3 (ENSSTOG00000010624) #22	LRRC73 (ENSSTOG00000010618) #23	TJAP1 (ENSSTOG00000010606) #24	DLK2 (ENSSTOG00000010600) #25	ABCC10 (ENSSTOG00000010566) #26	ENSSTOG00000012280 #27	CRIP3 (ENSSTOG00000024025) #28	SLC22A7 (ENSSTOG00000024272) #29	TTBK1 (ENSSTOG00000014248) #31	DNPH1 (ENSSTOG00000026925) #32	CUL9 (ENSSTOG00000014226) #33	SRF (ENSSTOG00000014222) #34	PTK7 (ENSSTOG00000014198) #35	KLC4 (ENSSTOG00000014183) #36	MRPL2 (ENSSTOG00000023948) #37	CUL7 (ENSSTOG00000009522) ##33
Alpin marmot	MODERN SPECIES	20	HSP90AB1 (ENSMMMG00000024577) #7	SLC29A1 (ENSMMMG00000024571) #8	MYMX (ENSMMMG00000024570) #9	CAPN11 (ENSMMMG00000024569) #10	TMEM63B (ENSMMMG00000024568) #11	MRPL14 (ENSMMMG00000024567) #12	ENSMMMG00000024566	VEGFA (ENSMMMG00000024565) #14	MRPS18A (ENSMMMG00000024564) #15	RSPH9 (ENSMMMG00000024563) #16	ENSMMMG00000024562 #17	GTPBP2 (ENSMMMG00000024561) #18	POLH (ENSMMMG00000024560) #19	XPO5 (ENSMMMG00000024559) #20	POLR1C (ENSMMMG00000024558) #21	YIPF3 (ENSMMMG00000024557) #22	LRRC73 (ENSMMMG00000024556) #23	TJAP1 (ENSMMMG00000024555) #24	DLK2 (ENSMMMG00000024553) #25	ABCC10 (ENSMMMG00000024552) #26	ENSMMMG00000024551	ZNF318 (ENSMMMG00000024550) #27	CRIP3 (ENSMMMG00000024549) #28	SLC22A7 (ENSMMMG00000024548) #29	TTBK1 (ENSMMMG00000024547) #31	DNPH1 (ENSMMMG00000024546) #32	CUL9 (ENSMMMG00000024544) #33	SRF (ENSMMMG00000024543) #34	PTK7 (ENSMMMG00000024542) #35	KLC4 (ENSMMMG00000024541) #36	MRPL2 (ENSMMMG00000024538) #37
Eurasian red squirrel	MODERN SPECIES	16	HSP90AB1 (ENSSVLG00005004982) #7	SLC29A1 (ENSSVLG00005004999) #8	MYMX (ENSSVLG00005005017) #9	CAPN11 (ENSSVLG00005005041) #10	TMEM63B (ENSSVLG00005005124) #11	MRPL14 (ENSSVLG00005005175) #12	VEGFA (ENSSVLG00005005248) #14	MRPS18A (ENSSVLG00005005389) #15	RSPH9 (ENSSVLG00005005429) #16	MAD2L1BP (ENSSVLG00005005455) #17	ENSSVLG00005005500 #18	POLH (ENSSVLG00005005606) #19	ENSSVLG00005005709	XPO5 (ENSSVLG00005005755) #20	POLR1C (ENSSVLG00005005820) #21	YIPF3 (ENSSVLG00005005873) #22	LRRC73 (ENSSVLG00005005929) #23	TJAP1 (ENSSVLG00005005960) #24	DLK2 (ENSSVLG00005006024) #25	ABCC10 (ENSSVLG00005006073) #26	ZNF318 (ENSSVLG00005006110) #27	CRIP3 (ENSSVLG00005006201) #28	SLC22A7 (ENSSVLG00005006303) #29	TTBK1 (ENSSVLG00005006427) #31	DNPH1 (ENSSVLG00005006570) #32	CUL9 (ENSSVLG00005006664) #33	SRF (ENSSVLG00005006722) #34	PTK7 (ENSSVLG00005006890) #35	KLC4 (ENSSVLG00005007306) #36	MRPL2 (ENSSVLG00005007449) #37	CUL7 (ENSSVLG00005007507) ##33
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Naked mole-rat female	MODERN SPECIES	4	SLC35B2 (ENSHGLG00000013337)	HSP90AB1 (ENSHGLG00000013490) #7	SLC29A1 (ENSHGLG00000013873) #8	MYMX (ENSHGLG00000014348) #9	ENSHGLG00000034302 #10	TMEM63B (ENSHGLG00000014725) #11	MRPL14 (ENSHGLG00000048124) #12	VEGFA (ENSHGLG00000045954) #14	MRPS18A (ENSHGLG00000014356) #15	RSPH9 (ENSHGLG00000050155) #16	MAD2L1BP (ENSHGLG00000014709) #17	GTPBP2 (ENSHGLG00000014886) #18	POLH (ENSHGLG00000019433) #19	XPO5 (ENSHGLG00000019191) #20	POLR1C (ENSHGLG00000039530) #21	YIPF3 (ENSHGLG00000019245) #22	LRRC73 (ENSHGLG00000019162) #23	TJAP1 (ENSHGLG00000050716) #24	DLK2 (ENSHGLG00000017186) #25	ABCC10 (ENSHGLG00000017199) #26	ZNF318 (ENSHGLG00000017209) #27	CRIP3 (ENSHGLG00000017216) #28	SLC22A7 (ENSHGLG00000019228) #29	TTBK1 (ENSHGLG00000019189) #31	DNPH1 (ENSHGLG00000045212) #32	CUL9 (ENSHGLG00000019373) #33	ENSHGLG00000019183 #34	ENSHGLG00000049441 #35	ENSHGLG00000032903	ENSHGLG00000017195	ZBTB22 (ENSHGLG00000017146)
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Long-tailed chinchilla	MODERN SPECIES	144	NFKBIE (ENSCLAG00000011710)	SLC35B2 (ENSCLAG00000010878)	HSP90AB1 (ENSCLAG00000015740) #7	SLC29A1 (ENSCLAG00000010529) #8	CAPN11 (ENSCLAG00000013084) #10	TMEM63B (ENSCLAG00000014238) #11	MRPL14 (ENSCLAG00000016855) #12	ENSCLAG00000014201 #14	MRPS18A (ENSCLAG00000012929) #15	RSPH9 (ENSCLAG00000012706) #16	MAD2L1BP (ENSCLAG00000011121) #17	GTPBP2 (ENSCLAG00000010271) #18	POLH (ENSCLAG00000010068) #19	XPO5 (ENSCLAG00000009723) #20	POLR1C (ENSCLAG00000009266) #21	YIPF3 (ENSCLAG00000015747) #22	LRRC73 (ENSCLAG00000015757) #23	TJAP1 (ENSCLAG00000009058) #24	DLK2 (ENSCLAG00000012976) #25	ABCC10 (ENSCLAG00000012360) #26	ZNF318 (ENSCLAG00000009156) #27	CRIP3 (ENSCLAG00000010491) #28	SLC22A7 (ENSCLAG00000009201) #29	TTBK1 (ENSCLAG00000012525) #31	DNPH1 (ENSCLAG00000011315) #32	CUL9 (ENSCLAG00000013036) #33	SRF (ENSCLAG00000010541) #34	PTK7 (ENSCLAG00000011720) #35	KLC4 (ENSCLAG00000012910) #36	MRPL2 (ENSCLAG00000011117) #37	CUL7 (ENSCLAG00000009633) ##33
Degu	MODERN SPECIES	46	NFKBIE (ENSODEG00000015243)	SLC35B2 (ENSODEG00000015458)	ENSODEG00000015488 ##7	ENSODEG00000015863	CAPN11 (ENSODEG00000015728) #10	TMEM63B (ENSODEG00000015474) #11	MRPL14 (ENSODEG00000015718) #12	ENSODEG00000016904 #14	MRPS18A (ENSODEG00000015388) #15	RSPH9 (ENSODEG00000015426) #16	MAD2L1BP (ENSODEG00000015761) #17	GTPBP2 (ENSODEG00000015979) #18	POLH (ENSODEG00000015994) #19	XPO5 (ENSODEG00000017078) #20	ENSODEG00000015831 #21	YIPF3 (ENSODEG00000016177) #22	LRRC73 (ENSODEG00000015609) #23	TJAP1 (ENSODEG00000016503) #24	DLK2 (ENSODEG00000015810) #25	ABCC10 (ENSODEG00000016331) #26	ZNF318 (ENSODEG00000015646) #27	ENSODEG00000020345	CRIP3 (ENSODEG00000015500) #28	SLC22A7 (ENSODEG00000016284) #29	ENSODEG00000015919 #31	DNPH1 (ENSODEG00000015708) #32	CUL9 (ENSODEG00000016007) #33	SRF (ENSODEG00000016147) #34	PTK7 (ENSODEG00000015717) #35	KLC4 (ENSODEG00000016341) #36	MRPL2 (ENSODEG00000015619) #37
Guinea pig	MODERN SPECIES	15	NFKBIE (ENSCPOG00000020455)	SLC35B2 (ENSCPOG00000032240)	HSP90AB1 (ENSCPOG00000003887) #7	SLC29A1 (ENSCPOG00000005137) #8	CAPN11 (ENSCPOG00000020426) #10	TMEM63B (ENSCPOG00000026287) #11	MRPL14 (ENSCPOG00000031064) #12	ENSCPOG00000013559 #14	MRPS18A (ENSCPOG00000022949) #15	RSPH9 (ENSCPOG00000020076) #16	MAD2L1BP (ENSCPOG00000036430) #17	GTPBP2 (ENSCPOG00000026957) #18	POLH (ENSCPOG00000013907) #19	XPO5 (ENSCPOG00000009917) #20	POLR1C (ENSCPOG00000038098) #21	YIPF3 (ENSCPOG00000009908) #22	LRRC73 (ENSCPOG00000024689) #23	TJAP1 (ENSCPOG00000009903) #24	DLK2 (ENSCPOG00000037284) #25	ABCC10 (ENSCPOG00000009891) #26	ZNF318 (ENSCPOG00000009884) #27	CRIP3 (ENSCPOG00000025292) #28	SLC22A7 (ENSCPOG00000012952) #29	TTBK1 (ENSCPOG00000039436) #31	DNPH1 (ENSCPOG00000025216) #32	CUL9 (ENSCPOG00000003615) #33	SRF (ENSCPOG00000022327) #34	PTK7 (ENSCPOG00000003045) #35	KLC4 (ENSCPOG00000000230) #36	MRPL2 (ENSCPOG00000024326) #37	CUL7 (ENSCPOG00000008848) ##33
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Rabbit	MODERN SPECIES	3	SLC35B2 (ENSOCUG00000017893)	HSP90AB1 (ENSOCUG00000012842) ##7	SLC29A1 (ENSOCUG00000017891) #8	MYMX (ENSOCUG00000034679) #9	CAPN11 (ENSOCUG00000017535) #10	ENSOCUG00000015740 #12	TMEM63B (ENSOCUG00000003464) #11	VEGFA (ENSOCUG00000011610) #14	MRPS18A (ENSOCUG00000005544) #15	RSPH9 (ENSOCUG00000005537) #16	MAD2L1BP (ENSOCUG00000005532) #17	GTPBP2 (ENSOCUG00000005529) #18	POLH (ENSOCUG00000005525) #19	XPO5 (ENSOCUG00000005510) #20	POLR1C (ENSOCUG00000005504) #21	YIPF3 (ENSOCUG00000005499) #22	LRRC73 (ENSOCUG00000005243) #23	TJAP1 (ENSOCUG00000023704) #24	DLK2 (ENSOCUG00000004371) #25	ABCC10 (ENSOCUG00000004357) #26	ZNF318 (ENSOCUG00000002302) #27	CRIP3 (ENSOCUG00000005795) #28	SLC22A7 (ENSOCUG00000005788) #29	TTBK1 (ENSOCUG00000028112) #31	DNPH1 (ENSOCUG00000021203) #32	CUL9 (ENSOCUG00000002897) #33	SRF (ENSOCUG00000002892) #34	PTK7 (ENSOCUG00000002874) #35	KLC4 (ENSOCUG00000001590) #36	MRPL2 (ENSOCUG00000001586) #37	CUL7 (ENSOCUG00000001578) ##33
Pika	MODERN SPECIES	817												GTPBP2 (ENSOPRG00000000150) #18	POLH (ENSOPRG00000000149) #19	XPO5 (ENSOPRG00000000146) #20	POLR1C (ENSOPRG00000000145) #21	YIPF3 (ENSOPRG00000000143) #22	LRRC73 (ENSOPRG00000000142) #23	TJAP1 (ENSOPRG00000000141) #24	ABCC10 (ENSOPRG00000000128) #26
Primates	ANCESTRAL SPECIES	5	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Mouse lemur	MODERN SPECIES	28	SLC35B2 (ENSMICG00000027103)	ENSMICG00000013394 ##7	SLC29A1 (ENSMICG00000038074) #8	CAPN11 (ENSMICG00000013043) #10	TMEM63B (ENSMICG00000013024) #11	MRPL14 (ENSMICG00000013022) #12	VEGFA (ENSMICG00000005068) #14	MRPS18A (ENSMICG00000005062) #15	RSPH9 (ENSMICG00000005058) #16	ENSMICG00000036804	MAD2L1BP (ENSMICG00000005055) #17	GTPBP2 (ENSMICG00000005049) #18	POLH (ENSMICG00000005044) #19	XPO5 (ENSMICG00000005032) #20	POLR1C (ENSMICG00000005027) #21	YIPF3 (ENSMICG00000005021) #22	LRRC73 (ENSMICG00000005015) #23	TJAP1 (ENSMICG00000005000) #24	DLK2 (ENSMICG00000008948) #25	ABCC10 (ENSMICG00000004986) #26	ZNF318 (ENSMICG00000008398) #27	CRIP3 (ENSMICG00000008393) #28	SLC22A7 (ENSMICG00000008384) #29	TTBK1 (ENSMICG00000008369) #31	DNPH1 (ENSMICG00000008364) #32	CUL9 (ENSMICG00000008335) #33	SRF (ENSMICG00000027236) #34	PTK7 (ENSMICG00000008302) #35	KLC4 (ENSMICG00000008292) #36	MRPL2 (ENSMICG00000008282) #37	CUL7 (ENSMICG00000008269) ##33
Lemuriformes_a	ANCESTRAL SPECIES	4	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Coquerels sifaka	MODERN SPECIES	209	NFKBIE (ENSPCOG00000017997)	SLC35B2 (ENSPCOG00000022881)	HSP90AB1 (ENSPCOG00000014792) #7	SLC29A1 (ENSPCOG00000026818) #8	CAPN11 (ENSPCOG00000022203) #10	TMEM63B (ENSPCOG00000010720) #11	MRPL14 (ENSPCOG00000018403) #12	VEGFA (ENSPCOG00000024221) #14	MRPS18A (ENSPCOG00000014911) #15	RSPH9 (ENSPCOG00000013626) #16	MAD2L1BP (ENSPCOG00000018428) #17	GTPBP2 (ENSPCOG00000013032) #18	POLH (ENSPCOG00000016246) #19	XPO5 (ENSPCOG00000028854) #20	POLR1C (ENSPCOG00000024628) #21	YIPF3 (ENSPCOG00000022721) #22	LRRC73 (ENSPCOG00000026727) #23	TJAP1 (ENSPCOG00000017355) #24	DLK2 (ENSPCOG00000017798) #25	ABCC10 (ENSPCOG00000024127) #26	ZNF318 (ENSPCOG00000028612) #27	CRIP3 (ENSPCOG00000023062) #28	SLC22A7 (ENSPCOG00000016937) #29	ENSPCOG00000025230 #31	DNPH1 (ENSPCOG00000020070) #32	CUL9 (ENSPCOG00000019251) #33	SRF (ENSPCOG00000022006) #34	PTK7 (ENSPCOG00000017949) #35	KLC4 (ENSPCOG00000025855) #36	MRPL2 (ENSPCOG00000016309) #37	CUL7 (ENSPCOG00000019001) ##33
Greater bamboo lemur	MODERN SPECIES	305	SLC35B2 (ENSPSMG00000019040)	HSP90AB1 (ENSPSMG00000018961) #7	SLC29A1 (ENSPSMG00000018858) #8	MYMX (ENSPSMG00000018800) #9	CAPN11 (ENSPSMG00000018791) #10	TMEM63B (ENSPSMG00000018668) #11	MRPL14 (ENSPSMG00000018525) #12	VEGFA (ENSPSMG00000018375) #14	MRPS18A (ENSPSMG00000018246) #15	RSPH9 (ENSPSMG00000018228) #16	MAD2L1BP (ENSPSMG00000018221) #17	GTPBP2 (ENSPSMG00000018214) #18	POLH (ENSPSMG00000018199) #19	XPO5 (ENSPSMG00000018128) #20	POLR1C (ENSPSMG00000018003) #21	YIPF3 (ENSPSMG00000017965) #22	LRRC73 (ENSPSMG00000017951) #23	TJAP1 (ENSPSMG00000017881) #24	DLK2 (ENSPSMG00000017798) #25	ABCC10 (ENSPSMG00000017786) #26	ZNF318 (ENSPSMG00000017751) #27	CRIP3 (ENSPSMG00000017742) #28	SLC22A7 (ENSPSMG00000017736) #29	TTBK1 (ENSPSMG00000017724) #31	DNPH1 (ENSPSMG00000017681) #32	CUL9 (ENSPSMG00000017664) #33	SRF (ENSPSMG00000017620) #34	PTK7 (ENSPSMG00000017499) #35	KLC4 (ENSPSMG00000017239) #36	MRPL2 (ENSPSMG00000017209) #37	CUL7 (ENSPSMG00000016995) ##33
Bushbaby	MODERN SPECIES	146	NFKBIE (ENSOGAG00000028890)	SLC35B2 (ENSOGAG00000029873)	ENSOGAG00000011961 ##7	SLC29A1 (ENSOGAG00000011955) #8	CAPN11 (ENSOGAG00000012715) #10	TMEM63B (ENSOGAG00000001281) #11	MRPL14 (ENSOGAG00000024589) #12	ENSOGAG00000000338 #14	MRPS18A (ENSOGAG00000026551) #15	RSPH9 (ENSOGAG00000016981) #16	MAD2L1BP (ENSOGAG00000016977) #17	GTPBP2 (ENSOGAG00000014246) #18	POLH (ENSOGAG00000016976) #19	XPO5 (ENSOGAG00000016321) #20	POLR1C (ENSOGAG00000016318) #21	YIPF3 (ENSOGAG00000016312) #22	LRRC73 (ENSOGAG00000016310) #23	TJAP1 (ENSOGAG00000016307) #24	DLK2 (ENSOGAG00000027836) #25	ABCC10 (ENSOGAG00000016288) #26	ZNF318 (ENSOGAG00000016276) #27	CRIP3 (ENSOGAG00000016274) #28	SLC22A7 (ENSOGAG00000025350) #29	TTBK1 (ENSOGAG00000016267) #31	DNPH1 (ENSOGAG00000027385) #32	CUL9 (ENSOGAG00000016252) #33	SRF (ENSOGAG00000029623) #34	PTK7 (ENSOGAG00000016239) #35	KLC4 (ENSOGAG00000012712) #36	MRPL2 (ENSOGAG00000034421) #37	CUL7 (ENSOGAG00000012700) ##33
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Tarsier	MODERN SPECIES	5049													FUBP3 (ENSTSYG00000028199)	ENSTSYG00000035070 #20	POLR1C (ENSTSYG00000011921) #21	YIPF3 (ENSTSYG00000003148) #22	LRRC73 (ENSTSYG00000003976) #23	TJAP1 (ENSTSYG00000034623) #24	DLK2 (ENSTSYG00000034289) #25	ABCC10 (ENSTSYG00000005414) #26
Simiiformes	ANCESTRAL SPECIES	5	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048.i #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Cebidae	ANCESTRAL SPECIES	5	ENSGT01020000230401.a.a.a.i.a.a.l #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048.i #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT01020000230401.a.a.a.i.a.a.l #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048.i #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Capuchin	MODERN SPECIES	197	SLC35B2 (ENSCCAG00000036364)	ENSCCAG00000028238 #7	SLC29A1 (ENSCCAG00000037630) #8	ENSCCAG00000036544	CAPN11 (ENSCCAG00000030442) #10	TMEM63B (ENSCCAG00000000296) #11	MRPL14 (ENSCCAG00000010453) #12	ENSCCAG00000024490	VEGFA (ENSCCAG00000032427) #14	MRPS18A (ENSCCAG00000021108) #15	RSPH9 (ENSCCAG00000037740) #16	ENSCCAG00000026449 #17	GTPBP2 (ENSCCAG00000034278) #18	POLH (ENSCCAG00000037764) #19	XPO5 (ENSCCAG00000017800) #20	YIPF3 (ENSCCAG00000022689) #22	POLR1C (ENSCCAG00000020169) #21	LRRC73 (ENSCCAG00000024158) #23	TJAP1 (ENSCCAG00000020836) #24	DLK2 (ENSCCAG00000033179) #25	ABCC10 (ENSCCAG00000027143) #26	ZNF318 (ENSCCAG00000032591) #27	CRIP3 (ENSCCAG00000026017) #28	SLC22A7 (ENSCCAG00000029157) #29	TTBK1 (ENSCCAG00000030223) #31	DNPH1 (ENSCCAG00000021417) #32	CUL9 (ENSCCAG00000024058) #33	SRF (ENSCCAG00000037773) #34	PTK7 (ENSCCAG00000037314) #35	KLC4 (ENSCCAG00000036348) #36	MRPL2 (ENSCCAG00000037139) #37
Bolivian squirrel monkey	MODERN SPECIES	49	SLC29A1 (ENSSBOG00000025930) #8	MYMX (ENSSBOG00000019228) #9	ENSSBOG00000033471	CAPN11 (ENSSBOG00000026495) #10	TMEM63B (ENSSBOG00000035379) #11	MRPL14 (ENSSBOG00000028248) #12	ENSSBOG00000029474	ENSSBOG00000030789 #14	MRPS18A (ENSSBOG00000019943) #15	RSPH9 (ENSSBOG00000031703) #16	MAD2L1BP (ENSSBOG00000029545) #17	GTPBP2 (ENSSBOG00000033640) #18	POLH (ENSSBOG00000021399) #19	XPO5 (ENSSBOG00000004763) #20	POLR1C (ENSSBOG00000025735) #21	YIPF3 (ENSSBOG00000020836) #22	LRRC73 (ENSSBOG00000029933) #23	TJAP1 (ENSSBOG00000034133) #24	DLK2 (ENSSBOG00000029284) #25	ABCC10 (ENSSBOG00000030546) #26	ZNF318 (ENSSBOG00000021601) #27	CRIP3 (ENSSBOG00000029366) #28	SLC22A7 (ENSSBOG00000022201) #29	TTBK1 (ENSSBOG00000023302) #31	ENSSBOG00000033212	DNPH1 (ENSSBOG00000035435) #32	CUL9 (ENSSBOG00000033084) #33	SRF (ENSSBOG00000033949) #34	PTK7 (ENSSBOG00000021487) #35	KLC4 (ENSSBOG00000023983) #36	MRPL2 (ENSSBOG00000034838) #37
Marmoset	MODERN SPECIES	16	SLC35B2 (ENSCJAG00000046050)	HSP90AB1 (ENSCJAG00000046966) #7	SLC29A1 (ENSCJAG00000012328) #8	MYMX (ENSCJAG00000022396) #9	ENSCJAG00000046846	CAPN11 (ENSCJAG00000012346) #10	TMEM63B (ENSCJAG00000012369) #11	MRPL14 (ENSCJAG00000012454) #12	VEGFA (ENSCJAG00000012459) #14	MRPS18A (ENSCJAG00000017382) #15	RSPH9 (ENSCJAG00000017374) #16	MAD2L1BP (ENSCJAG00000005854) #17	GTPBP2 (ENSCJAG00000005800) #18	POLH (ENSCJAG00000005770) #19	XPO5 (ENSCJAG00000005612) #20	YIPF3 (ENSCJAG00000005563) #22	LRRC73 (ENSCJAG00000005532) #23	TJAP1 (ENSCJAG00000005594) #24	DLK2 (ENSCJAG00000005485) #25	ABCC10 (ENSCJAG00000005446) #26	ENSCJAG00000086465	ZNF318 (ENSCJAG00000005420) #27	CRIP3 (ENSCJAG00000005390) #28	SLC22A7 (ENSCJAG00000005355) #29	TTBK1 (ENSCJAG00000005343) #31	DNPH1 (ENSCJAG00000005337) #32	CUL9 (ENSCJAG00000005240) #33	SRF (ENSCJAG00000005223) #34	PTK7 (ENSCJAG00000005136) #35	KLC4 (ENSCJAG00000004979) #36	MRPL2 (ENSCJAG00000073816) #37
Mas night monkey	MODERN SPECIES	882	MYMX (ENSANAG00000019285) #9	CAPN11 (ENSANAG00000021503) #10	ENSANAG00000022828	TMEM63B (ENSANAG00000025745) #11	MRPL14 (ENSANAG00000025052) #12	ENSANAG00000026877	VEGFA (ENSANAG00000021825) #14	ENSANAG00000019769	MRPS18A (ENSANAG00000030889) #15	RSPH9 (ENSANAG00000034070) #16	MAD2L1BP (ENSANAG00000031169) #17	GTPBP2 (ENSANAG00000037352) #18	POLH (ENSANAG00000036689) #19	XPO5 (ENSANAG00000029648) #20	POLR1C (ENSANAG00000025805) #21	YIPF3 (ENSANAG00000038223) #22	LRRC73 (ENSANAG00000030063) #23	TJAP1 (ENSANAG00000034946) #24	DLK2 (ENSANAG00000022648) #25	ABCC10 (ENSANAG00000020430) #26	ENSANAG00000026475	ZNF318 (ENSANAG00000032798) #27	CRIP3 (ENSANAG00000025487) #28	SLC22A7 (ENSANAG00000012666) #29	TTBK1 (ENSANAG00000037774) #31	DNPH1 (ENSANAG00000025672) #32	CUL9 (ENSANAG00000010029) #33	SRF (ENSANAG00000010879) #34	PTK7 (ENSANAG00000028874) #35	KLC4 (ENSANAG00000037680) #36	MRPL2 (ENSANAG00000037029) #37
Catarrhini	ANCESTRAL SPECIES	5	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000154259.l.c.a.a	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Vervet Monkey	MODERN SPECIES	8	HSP90AB1 (ENSCSAG00000012423) #7	SLC35B2 (ENSCSAG00000012413)	SLC29A1 (ENSCSAG00000012409) #8	CAPN11 (ENSCSAG00000012369) #10	TMEM63B (ENSCSAG00000012227) #11	ENSCSAG00000012220 #12	ENSCSAG00000012214	VEGFA (ENSCSAG00000012195) #14	MRPS18A (ENSCSAG00000012127) #15	RSPH9 (ENSCSAG00000012119) #16	MAD2L1BP (ENSCSAG00000012107) #17	GTPBP2 (ENSCSAG00000012105) #18	POLH (ENSCSAG00000012095) #19	XPO5 (ENSCSAG00000012047) #20	POLR1C (ENSCSAG00000011913) #21	YIPF3 (ENSCSAG00000011892) #22	LRRC73 (ENSCSAG00000011840) #23	TJAP1 (ENSCSAG00000011836) #24	DLK2 (ENSCSAG00000011827) #25	ABCC10 (ENSCSAG00000011802) #26	ZNF318 (ENSCSAG00000011718) #27	CRIP3 (ENSCSAG00000011708) #28	SLC22A7 (ENSCSAG00000011701) #29	TTBK1 (ENSCSAG00000011686) #31	DNPH1 (ENSCSAG00000011657) #32	CUL9 (ENSCSAG00000011645) #33	SRF (ENSCSAG00000011622) #34	PTK7 (ENSCSAG00000011617) #35	ENSCSAG00000019299	KLC4 (ENSCSAG00000011604) #36	MRPL2 (ENSCSAG00000011591) #37
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000154259.l.c.a.a.a	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Macaca	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00950000183198.c.a.b.a.a	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Pig-tailed macaque	MODERN SPECIES	157	HSP90AB1 (ENSMNEG00000034241) #7	SLC29A1 (ENSMNEG00000029998) #8	MYMX (ENSMNEG00000010782) #9	CAPN11 (ENSMNEG00000029403) #10	TMEM63B (ENSMNEG00000039311) #11	MRPL14 (ENSMNEG00000034641) #12	ENSMNEG00000029690	VEGFA (ENSMNEG00000041005) #14	MRPS18A (ENSMNEG00000044642) #15	RSPH9 (ENSMNEG00000045520) #16	MAD2L1BP (ENSMNEG00000042395) #17	GTPBP2 (ENSMNEG00000029284) #18	POLH (ENSMNEG00000042281) #19	XPO5 (ENSMNEG00000035404) #20	POLR1C (ENSMNEG00000028073) #21	YIPF3 (ENSMNEG00000044770) #22	LRRC73 (ENSMNEG00000033430) #23	TJAP1 (ENSMNEG00000025245) #24	DLK2 (ENSMNEG00000029917) #25	ABCC10 (ENSMNEG00000036492) #26	ZNF318 (ENSMNEG00000039136) #27	CRIP3 (ENSMNEG00000034964) #28	SLC22A7 (ENSMNEG00000033416) #29	TTBK1 (ENSMNEG00000034929) #31	DNPH1 (ENSMNEG00000026166) #32	CUL9 (ENSMNEG00000029802) #33	SRF (ENSMNEG00000041345) #34	ENSMNEG00000036785	PTK7 (ENSMNEG00000036909) #35	KLC4 (ENSMNEG00000044930) #36	MRPL2 (ENSMNEG00000029931) #37
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Rhesus	MODERN SPECIES	14	SLC35B2 (ENSMMUG00000022687)	HSP90AB1 (ENSMMUG00000022685) #7	TMEM63B (ENSMMUG00000016230) #11	MRPL14 (ENSMMUG00000055882) #12	LINC03040 (ENSMMUG00000011364)	VEGFA (ENSMMUG00000004577) #14	ENSMMUG00000060582	MRPS18A (ENSMMUG00000014749) #15	RSPH9 (ENSMMUG00000053865) #16	MAD2L1BP (ENSMMUG00000059717) #17	GTPBP2 (ENSMMUG00000008890) #18	ENSMMUG00000055195	POLH (ENSMMUG00000008903) #19	XPO5 (ENSMMUG00000015193) #20	POLR1C (ENSMMUG00000015192) #21	YIPF3 (ENSMMUG00000023322) #22	LRRC73 (ENSMMUG00000051917) #23	TJAP1 (ENSMMUG00000023319) #24	ABCC10 (ENSMMUG00000015569) #26	DLK2 (ENSMMUG00000062054) #25	ZNF318 (ENSMMUG00000011567) #27	CRIP3 (ENSMMUG00000022942) #28	SLC22A7 (ENSMMUG00000022941) #29	TTBK1 (ENSMMUG00000017322) #31	DNPH1 (ENSMMUG00000013990) #32	CUL9 (ENSMMUG00000005434) #33	SRF (ENSMMUG00000000033) #34	PTK7 (ENSMMUG00000011670) #35	KLC4 (ENSMMUG00000011668) #36	CUL7 (ENSMMUG00000002451) ##33	RRP36 (ENSMMUG00000057976)
Crab-eating macaque	MODERN SPECIES	14	TCTE1 (ENSMFAG00000033042)	TMEM63B (ENSMFAG00000041643) #11	NFKBIE (ENSMFAG00000037930)	SLC35B2 (ENSMFAG00000037986)	HSP90AB1 (ENSMFAG00000038525) #7	MRPL14 (ENSMFAG00000041809) #12	ENSMFAG00000059266	VEGFA (ENSMFAG00000043991) #14	MRPS18A (ENSMFAG00000038311) #15	RSPH9 (ENSMFAG00000003254) #16	MAD2L1BP (ENSMFAG00000038892) #17	GTPBP2 (ENSMFAG00000037532) #18	POLH (ENSMFAG00000045603) #19	XPO5 (ENSMFAG00000038120) #20	POLR1C (ENSMFAG00000046295) #21	YIPF3 (ENSMFAG00000032170) #22	LRRC73 (ENSMFAG00000033631) #23	TJAP1 (ENSMFAG00000030989) #24	DLK2 (ENSMFAG00000000134) #25	ABCC10 (ENSMFAG00000036554) #26	ZNF318 (ENSMFAG00000019122) #27	CRIP3 (ENSMFAG00000030762) #28	SLC22A7 (ENSMFAG00000000127) #29	ENSMFAG00000034632 #31	DNPH1 (ENSMFAG00000038043) #32	CUL9 (ENSMFAG00000001906) #33	SRF (ENSMFAG00000043125) #34	PTK7 (ENSMFAG00000044413) #35	ENSMFAG00000053834	ENSMFAG00000034748	KLC4 (ENSMFAG00000038153) #36
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000154259.l.c.a.a.a	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Olive baboon	MODERN SPECIES	16	HSP90AB1 (ENSPANG00000000442) #7	SLC29A1 (ENSPANG00000023625) #8	MYMX (ENSPANG00000034855) #9	CAPN11 (ENSPANG00000023068) #10	TMEM63B (ENSPANG00000023571) #11	ENSPANG00000046969 #12	ENSPANG00000005020	VEGFA (ENSPANG00000004079) #14	MRPS18A (ENSPANG00000006967) #15	RSPH9 (ENSPANG00000030372) #16	MAD2L1BP (ENSPANG00000020360) #17	GTPBP2 (ENSPANG00000023626) #18	POLH (ENSPANG00000016473) #19	XPO5 (ENSPANG00000004080) #20	POLR1C (ENSPANG00000009025) #21	YIPF3 (ENSPANG00000023627) #22	LRRC73 (ENSPANG00000005641) #23	TJAP1 (ENSPANG00000045338) #24	DLK2 (ENSPANG00000023628) #25	ABCC10 (ENSPANG00000015995) #26	ZNF318 (ENSPANG00000008158) #27	CRIP3 (ENSPANG00000007156) #28	SLC22A7 (ENSPANG00000024486) #29	TTBK1 (ENSPANG00000021604) #31	DNPH1 (ENSPANG00000020870) #32	CUL9 (ENSPANG00000023069) #33	SRF (ENSPANG00000006410) #34	PTK7 (ENSPANG00000015745) #35	KLC4 (ENSPANG00000007016) #36	MRPL2 (ENSPANG00000022610) #37	CUL7 (ENSPANG00000020449) ##33
Cercopithecinae_d	ANCESTRAL SPECIES	13	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000154259.l.c.a.a.a	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Sooty mangabey	MODERN SPECIES	97	HSP90AB1 (ENSCATG00000035400) #7	SLC29A1 (ENSCATG00000025154) #8	MYMX (ENSCATG00000020334) #9	CAPN11 (ENSCATG00000040416) #10	TMEM63B (ENSCATG00000041638) #11	MRPL14 (ENSCATG00000027037) #12	ENSCATG00000029856	VEGFA (ENSCATG00000030128) #14	MRPS18A (ENSCATG00000012963) #15	RSPH9 (ENSCATG00000030811) #16	MAD2L1BP (ENSCATG00000042247) #17	GTPBP2 (ENSCATG00000044605) #18	POLH (ENSCATG00000041260) #19	XPO5 (ENSCATG00000036321) #20	POLR1C (ENSCATG00000044045) #21	YIPF3 (ENSCATG00000038097) #22	LRRC73 (ENSCATG00000041876) #23	TJAP1 (ENSCATG00000037638) #24	DLK2 (ENSCATG00000044667) #25	ABCC10 (ENSCATG00000027767) #26	ZNF318 (ENSCATG00000018061) #27	ENSCATG00000032161	CRIP3 (ENSCATG00000039382) #28	SLC22A7 (ENSCATG00000041755) #29	TTBK1 (ENSCATG00000038616) #31	DNPH1 (ENSCATG00000034825) #32	CUL9 (ENSCATG00000036803) #33	SRF (ENSCATG00000033129) #34	ENSCATG00000036503	PTK7 (ENSCATG00000037287) #35	KLC4 (ENSCATG00000036991) #36
Drill	MODERN SPECIES	941	HSP90AB1 (ENSMLEG00000024522) #7	SLC29A1 (ENSMLEG00000037598) #8	MYMX (ENSMLEG00000024197) #9	CAPN11 (ENSMLEG00000032534) #10	TMEM63B (ENSMLEG00000036196) #11	MRPL14 (ENSMLEG00000030732) #12	ENSMLEG00000032234	ENSMLEG00000038668 #14	MRPS18A (ENSMLEG00000041828) #15	RSPH9 (ENSMLEG00000038825) #16	MAD2L1BP (ENSMLEG00000028705) #17	GTPBP2 (ENSMLEG00000020440) #18	POLH (ENSMLEG00000035423) #19	XPO5 (ENSMLEG00000035689) #20	POLR1C (ENSMLEG00000034818) #21	YIPF3 (ENSMLEG00000036767) #22	LRRC73 (ENSMLEG00000042718) #23	TJAP1 (ENSMLEG00000036943) #24	DLK2 (ENSMLEG00000032200) #25	ABCC10 (ENSMLEG00000043799) #26	ENSMLEG00000043913	ZNF318 (ENSMLEG00000036305) #27	CRIP3 (ENSMLEG00000041577) #28	SLC22A7 (ENSMLEG00000033756) #29	TTBK1 (ENSMLEG00000042191) #31	DNPH1 (ENSMLEG00000041639) #32	CUL9 (ENSMLEG00000032343) #33	SRF (ENSMLEG00000010779) #34	ENSMLEG00000035203	ENSMLEG00000036459	PTK7 (ENSMLEG00000033822) #35
Rhinopithecus	ANCESTRAL SPECIES	26	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493.g #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00950000183198.c.a.b.a.a.u.a	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37
Black snub-nosed monkey	MODERN SPECIES	593	SLC35B2 (ENSRBIG00000034146)	ENSRBIG00000042211 #7	SLC29A1 (ENSRBIG00000042697) #8	CAPN11 (ENSRBIG00000011545) #10	TMEM63B (ENSRBIG00000044671) #11	MRPL14 (ENSRBIG00000033909) #12	ENSRBIG00000039088	VEGFA (ENSRBIG00000041235) #14	MRPS18A (ENSRBIG00000028789) #15	RSPH9 (ENSRBIG00000040189) #16	MAD2L1BP (ENSRBIG00000030116) #17	GTPBP2 (ENSRBIG00000029462) #18	POLH (ENSRBIG00000028330) #19	XPO5 (ENSRBIG00000027492) #20	POLR1C (ENSRBIG00000007155) #21	YIPF3 (ENSRBIG00000024553) #22	LRRC73 (ENSRBIG00000013069) #23	TJAP1 (ENSRBIG00000026502) #24	DLK2 (ENSRBIG00000027824) #25	ABCC10 (ENSRBIG00000038106) #26	ZNF318 (ENSRBIG00000028800) #27	ENSRBIG00000035779	CRIP3 (ENSRBIG00000032426) #28	SLC22A7 (ENSRBIG00000035223) #29	TTBK1 (ENSRBIG00000034564) #31	DNPH1 (ENSRBIG00000033326) #32	CUL9 (ENSRBIG00000038845) #33	SRF (ENSRBIG00000000055) #34	PTK7 (ENSRBIG00000029424) #35	ENSRBIG00000026114	KLC4 (ENSRBIG00000036599) #36
Golden snub-nosed monkey	MODERN SPECIES	1467	SLC35B2 (ENSRROG00000032586)	ENSRROG00000044790 #7	SLC29A1 (ENSRROG00000028919) #8	CAPN11 (ENSRROG00000041564) #10	TMEM63B (ENSRROG00000033277) #11	MRPL14 (ENSRROG00000032944) #12	ENSRROG00000036982	VEGFA (ENSRROG00000043969) #14	ENSRROG00000042368 #15	RSPH9 (ENSRROG00000044978) #16	MAD2L1BP (ENSRROG00000032041) #17	GTPBP2 (ENSRROG00000027613) #18	POLH (ENSRROG00000036383) #19	XPO5 (ENSRROG00000030655) #20	POLR1C (ENSRROG00000000257) #21	YIPF3 (ENSRROG00000035727) #22	LRRC73 (ENSRROG00000014260) #23	TJAP1 (ENSRROG00000040743) #24	DLK2 (ENSRROG00000045486) #25	ABCC10 (ENSRROG00000037318) #26	ZNF318 (ENSRROG00000038950) #27	CRIP3 (ENSRROG00000029473) #28	SLC22A7 (ENSRROG00000013937) #29	TTBK1 (ENSRROG00000044648) #31	DNPH1 (ENSRROG00000012689) #32	CUL9 (ENSRROG00000034859) #33	SRF (ENSRROG00000034320) #34	ENSRROG00000004596	PTK7 (ENSRROG00000042804) #35	KLC4 (ENSRROG00000045767) #36	MRPL2 (ENSRROG00000032437) #37
Hominoidea	ANCESTRAL SPECIES	4	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Gibbon	MODERN SPECIES	7	SLC35B2 (ENSNLEG00000003703)	ENSNLEG00000029372 ##7	SLC29A1 (ENSNLEG00000003716) #8	MYMX (ENSNLEG00000019018) #9	ENSNLEG00000003797 #10	TMEM63B (ENSNLEG00000003801) #11	ENSNLEG00000003824	VEGFA (ENSNLEG00000003829) #14	MRPS18A (ENSNLEG00000003865) #15	ENSNLEG00000003901 #16	MAD2L1BP (ENSNLEG00000033665) #17	GTPBP2 (ENSNLEG00000003909) #18	POLH (ENSNLEG00000003958) #19	XPO5 (ENSNLEG00000003966) #20	POLR1C (ENSNLEG00000004035) #21	ENSNLEG00000004074 #22	LRRC73 (ENSNLEG00000004080) #23	ENSNLEG00000029088	DLK2 (ENSNLEG00000030265) #25	ABCC10 (ENSNLEG00000004134) #26	ZNF318 (ENSNLEG00000004151) #27	CRIP3 (ENSNLEG00000004164) #28	SLC22A7 (ENSNLEG00000004171) #29	ENSNLEG00000004198 #31	SRF (ENSNLEG00000004203) #34	PTK7 (ENSNLEG00000004223) #35	KLC4 (ENSNLEG00000004359) #36	MRPL2 (ENSNLEG00000004370) #37	CUL7 (ENSNLEG00000027449) ##33	RRP36 (ENSNLEG00000033289)	KLHDC3 (ENSNLEG00000004399)
Hominidae	ANCESTRAL SPECIES	5	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Orangutan	MODERN SPECIES	19	SLC35B2 (ENSPPYG00000032493)	HSP90AB1 (ENSPPYG00000016655) #7	SLC29A1 (ENSPPYG00000016654) #8	MYMX (ENSPPYG00000039061) #9	CAPN11 (ENSPPYG00000016652) #10	TMEM63B (ENSPPYG00000016651) #11	MRPL14 (ENSPPYG00000016650) #12	ENSPPYG00000016649	VEGFA (ENSPPYG00000016647) #14	MRPS18A (ENSPPYG00000017282) #15	MAD2L1BP (ENSPPYG00000017281) #17	GTPBP2 (ENSPPYG00000017279) #18	POLH (ENSPPYG00000033093) #19	XPO5 (ENSPPYG00000016646) #20	POLR1C (ENSPPYG00000016645) #21	YIPF3 (ENSPPYG00000016644) #22	ENSPPYG00000016643 #23	TJAP1 (ENSPPYG00000016642) #24	DLK2 (ENSPPYG00000016641) #25	ABCC10 (ENSPPYG00000016640) #26	ZNF318 (ENSPPYG00000016639) #27	CRIP3 (ENSPPYG00000016638) #28	SLC22A7 (ENSPPYG00000016637) #29	TTBK1 (ENSPPYG00000016636) #31	ENSPPYG00000016635 #32	CUL9 (ENSPPYG00000016634) #33	SRF (ENSPPYG00000016633) #34	PTK7 (ENSPPYG00000016632) #35	KLC4 (ENSPPYG00000016631) #36	MRPL2 (ENSPPYG00000016630) #37	CUL7 (ENSPPYG00000016629) ##33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00910000148752	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Gorilla	MODERN SPECIES	19	SLC29A1 (ENSGGOG00000008377) #8	MYMX (ENSGGOG00000022349) #9	CAPN11 (ENSGGOG00000003079) #10	TMEM63B (ENSGGOG00000003071) #11	MRPL14 (ENSGGOG00000006098) #12	ENSGGOG00000043300	ENSGGOG00000043498	VEGFA (ENSGGOG00000012714) #14	ENSGGOG00000006303 #15	ENSGGOG00000006299 #16	MAD2L1BP (ENSGGOG00000023906) #17	GTPBP2 (ENSGGOG00000014744) #18	ENSGGOG00000043699 #19	XPO5 (ENSGGOG00000007940) #20	POLR1C (ENSGGOG00000010903) #21	ENSGGOG00000010894 #22	LRRC73 (ENSGGOG00000015189) #23	TJAP1 (ENSGGOG00000015185) #24	DLK2 (ENSGGOG00000008606) #25	ABCC10 (ENSGGOG00000026443) #26	ZNF318 (ENSGGOG00000012851) #27	CRIP3 (ENSGGOG00000015193) #28	SLC22A7 (ENSGGOG00000015187) #29	TTBK1 (ENSGGOG00000000442) #31	ENSGGOG00000011357 #32	CUL9 (ENSGGOG00000005599) #33	ENSGGOG00000006293 #34	PTK7 (ENSGGOG00000010579) #35	KLC4 (ENSGGOG00000010558) #36	MRPL2 (ENSGGOG00000010552) #37	CUL7 (ENSGGOG00000010532) ##33
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00910000148752	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Human	MODERN SPECIES	18	NFKBIE (ENSG00000146232)	SLC35B2 (ENSG00000157593)	HSP90AB1 (ENSG00000096384) #7	SLC29A1 (ENSG00000112759) #8	MYMX (ENSG00000262179) #9	CAPN11 (ENSG00000137225) #10	TMEM63B (ENSG00000137216) #11	MRPL14 (ENSG00000180992) #12	VEGFA (ENSG00000112715) #14	MRPS18A (ENSG00000096080) #15	RSPH9 (ENSG00000172426) #16	MAD2L1BP (ENSG00000124688) #17	GTPBP2 (ENSG00000172432) #18	POLH (ENSG00000170734) #19	XPO5 (ENSG00000124571) #20	YIPF3 (ENSG00000137207) #22	POLR1C (ENSG00000171453) #21	LRRC73 (ENSG00000204052) #23	TJAP1 (ENSG00000137221) #24	DLK2 (ENSG00000171462) #25	ABCC10 (ENSG00000124574) #26	ZNF318 (ENSG00000171467) #27	CRIP3 (ENSG00000146215) #28	SLC22A7 (ENSG00000137204) #29	TTBK1 (ENSG00000146216) #31	DNPH1 (ENSG00000112667) #32	CUL9 (ENSG00000112659) #33	SRF (ENSG00000112658) #34	PTK7 (ENSG00000112655) #35	MRPL2 (ENSG00000112651) #37	KLC4 (ENSG00000137171) #36
Pan	ANCESTRAL SPECIES	5	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00910000148752	ENSGT00390000005085	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543.e #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Chimpanzee	MODERN SPECIES	19	MYMX (ENSPTRG00000043831) #9	CAPN11 (ENSPTRG00000018215) #10	TMEM63B (ENSPTRG00000018214) #11	MRPL14 (ENSPTRG00000018213) #12	ENSPTRG00000046423	LINC03040 (ENSPTRG00000044964)	VEGFA (ENSPTRG00000043213) #14	MRPS18A (ENSPTRG00000018209) #15	RSPH9 (ENSPTRG00000052351) #16	MAD2L1BP (ENSPTRG00000018207) #17	GTPBP2 (ENSPTRG00000018206) #18	POLH (ENSPTRG00000018205) #19	ENSPTRG00000047136	XPO5 (ENSPTRG00000018204) #20	POLR1C (ENSPTRG00000018202) #21	YIPF3 (ENSPTRG00000018201) #22	LRRC73 (ENSPTRG00000034451) #23	TJAP1 (ENSPTRG00000018199) #24	DLK2 (ENSPTRG00000018198) #25	ABCC10 (ENSPTRG00000018197) #26	ZNF318 (ENSPTRG00000018196) #27	CRIP3 (ENSPTRG00000018195) #28	SLC22A7 (ENSPTRG00000018194) #29	TTBK1 (ENSPTRG00000018193) #31	DNPH1 (ENSPTRG00000029662) #32	CUL9 (ENSPTRG00000018191) #33	SRF (ENSPTRG00000018189) #34	PTK7 (ENSPTRG00000018188) #35	KLC4 (ENSPTRG00000018187) #36	MRPL2 (ENSPTRG00000018186) #37	CUL7 (ENSPTRG00000018185) ##33
Bonobo	MODERN SPECIES	19	MYMX (ENSPPAG00000026302) #9	CAPN11 (ENSPPAG00000035892) #10	TMEM63B (ENSPPAG00000027102) #11	MRPL14 (ENSPPAG00000036858) #12	ENSPPAG00000041620	ENSPPAG00000033753	VEGFA (ENSPPAG00000027018) #14	MRPS18A (ENSPPAG00000036291) #15	ENSPPAG00000040963 #16	MAD2L1BP (ENSPPAG00000041364) #17	GTPBP2 (ENSPPAG00000034475) #18	POLH (ENSPPAG00000038133) #19	ENSPPAG00000040669	XPO5 (ENSPPAG00000039971) #20	POLR1C (ENSPPAG00000043678) #21	ENSPPAG00000015711 #22	LRRC73 (ENSPPAG00000041796) #23	TJAP1 (ENSPPAG00000029733) #24	DLK2 (ENSPPAG00000026818) #25	ABCC10 (ENSPPAG00000000313) #26	ZNF318 (ENSPPAG00000029882) #27	CRIP3 (ENSPPAG00000038946) #28	SLC22A7 (ENSPPAG00000038526) #29	TTBK1 (ENSPPAG00000033408) #31	ENSPPAG00000039553 #32	CUL9 (ENSPPAG00000036258) #33	SRF (ENSPPAG00000028594) #34	PTK7 (ENSPPAG00000039415) #35	KLC4 (ENSPPAG00000031629) #36	MRPL2 (ENSPPAG00000036609) #37	CUL7 (ENSPPAG00000035495) ##33
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Suina	ANCESTRAL SPECIES	17	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Pig	MODERN SPECIES	15	SLC35B2 (ENSSSCG00000001702)	HSP90AB1 (ENSSSCG00000001701) #7	SLC29A1 (ENSSSCG00000001700) #8	MYMX (ENSSSCG00000053910) #9	CAPN11 (ENSSSCG00000001698) #10	TMEM63B (ENSSSCG00000001697) #11	ENSSSCG00000001696 #12	VEGFA (ENSSSCG00000001695) #14	MRPS18A (ENSSSCG00000001692) #15	RSPH9 (ENSSSCG00000001691) #16	MAD2L1BP (ENSSSCG00000016346) #17	GTPBP2 (ENSSSCG00000001689) #18	POLH (ENSSSCG00000001683) #19	XPO5 (ENSSSCG00000001679) #20	POLR1C (ENSSSCG00000028007) #21	YIPF3 (ENSSSCG00000033627) #22	LRRC73 (ENSSSCG00000001676) #23	TJAP1 (ENSSSCG00000001688) #24	DLK2 (ENSSSCG00000001682) #25	ABCC10 (ENSSSCG00000001680) #26	ZNF318 (ENSSSCG00000001667) #27	CRIP3 (ENSSSCG00000001672) #28	SLC22A7 (ENSSSCG00000027796) #29	TTBK1 (ENSSSCG00000001664) #31	DNPH1 (ENSSSCG00000026568) #32	CUL9 (ENSSSCG00000030196) #33	SRF (ENSSSCG00000001661) #34	PTK7 (ENSSSCG00000001660) #35	KLC4 (ENSSSCG00000001659) #36	MRPL2 (ENSSSCG00000001658) #37	CUL7 (ENSSSCG00000001657) ##33
Chacoan peccary	MODERN SPECIES	781	SLC35B2 (ENSCWAG00000013979)	HSP90AB1 (ENSCWAG00000014052) #7	SLC29A1 (ENSCWAG00000014160) #8	MYMX (ENSCWAG00000014424) #9	CAPN11 (ENSCWAG00000014460) #10	TMEM63B (ENSCWAG00000014863) #11	MRPL14 (ENSCWAG00000014930) #12	VEGFA (ENSCWAG00000015280) #14	MRPS18A (ENSCWAG00000015571) #15	RSPH9 (ENSCWAG00000015624) #16	MAD2L1BP (ENSCWAG00000015648) #17	GTPBP2 (ENSCWAG00000015681) #18	POLH (ENSCWAG00000015745) #19	XPO5 (ENSCWAG00000015792) #20	POLR1C (ENSCWAG00000015847) #21	YIPF3 (ENSCWAG00000015909) #22	LRRC73 (ENSCWAG00000015949) #23	TJAP1 (ENSCWAG00000015999) #24	DLK2 (ENSCWAG00000016037) #25	ABCC10 (ENSCWAG00000016106) #26	ZNF318 (ENSCWAG00000016153) #27	CRIP3 (ENSCWAG00000016242) #28	SLC22A7 (ENSCWAG00000016355) #29	TTBK1 (ENSCWAG00000016552) #31	CUL9 (ENSCWAG00000016761) #33	SRF (ENSCWAG00000016822) #34	PTK7 (ENSCWAG00000016875) #35	KLC4 (ENSCWAG00000017149) #36	MRPL2 (ENSCWAG00000017372) #37	CUL7 (ENSCWAG00000017434) ##33	RRP36 (ENSCWAG00000017498)
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Camelidae	ANCESTRAL SPECIES	13	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Arabian camel	MODERN SPECIES	12	SLC35B2 (ENSCDRG00005016257)	HSP90AB1 (ENSCDRG00005016031) #7	SLC29A1 (ENSCDRG00005015969) #8	MYMX (ENSCDRG00005015949) #9	CAPN11 (ENSCDRG00005015801) #10	TMEM63B (ENSCDRG00005015620) #11	ENSCDRG00005015582 #12	VEGFA (ENSCDRG00005015143) #14	MRPS18A (ENSCDRG00005015039) #15	RSPH9 (ENSCDRG00005014999) #16	MAD2L1BP (ENSCDRG00005014925) #17	GTPBP2 (ENSCDRG00005014856) #18	POLH (ENSCDRG00005014731) #19	XPO5 (ENSCDRG00005014588) #20	POLR1C (ENSCDRG00005014297) #21	YIPF3 (ENSCDRG00005014231) #22	LRRC73 (ENSCDRG00005014167) #23	TJAP1 (ENSCDRG00005014032) #24	DLK2 (ENSCDRG00005013956) #25	ABCC10 (ENSCDRG00005013835) #26	ZNF318 (ENSCDRG00005013778) #27	CRIP3 (ENSCDRG00005013526) #28	SLC22A7 (ENSCDRG00005013276) #29	ENSCDRG00005013231	TTBK1 (ENSCDRG00005013065) #31	DNPH1 (ENSCDRG00005012978) #32	CUL9 (ENSCDRG00005012732) #33	SRF (ENSCDRG00005012609) #34	ENSCDRG00005010109 #35	KLC4 (ENSCDRG00005009630) #36	MRPL2 (ENSCDRG00005009331) #37
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048.f #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Dolphin	MODERN SPECIES	904									MRPS18A (ENSTTRG00000006354) #15	ENSTTRG00000006353 #16	MAD2L1BP (ENSTTRG00000006352) #17	GTPBP2 (ENSTTRG00000006351) #18	POLH (ENSTTRG00000006350) #19	XPO5 (ENSTTRG00000006347) #20	POLR1C (ENSTTRG00000006344) #21	YIPF3 (ENSTTRG00000006343) #22	LRRC73 (ENSTTRG00000006341) #23	TJAP1 (ENSTTRG00000006339) #24	DLK2 (ENSTTRG00000006338) #25	ABCC10 (ENSTTRG00000006336) #26	ZNF318 (ENSTTRG00000006335) #27	CRIP3 (ENSTTRG00000006334) #28	SLC22A7 (ENSTTRG00000006330) #29	TTBK1 (ENSTTRG00000006319) #31
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048.f #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b.c #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Vaquita	MODERN SPECIES	2	SLC35B2 (ENSPSNG00000021691)	ENSPSNG00000021648 ##7	SLC29A1 (ENSPSNG00000021618) #8	MYMX (ENSPSNG00000021603) #9	CAPN11 (ENSPSNG00000021548) #10	TMEM63B (ENSPSNG00000021472) #11	MRPL14 (ENSPSNG00000021435) #12	VEGFA (ENSPSNG00000021211) #14	MRPS18A (ENSPSNG00000021141) #15	RSPH9 (ENSPSNG00000021111) #16	MAD2L1BP (ENSPSNG00000021072) #17	GTPBP2 (ENSPSNG00000021031) #18	ENSPSNG00000020987 #19	XPO5 (ENSPSNG00000020944) #20	POLR1C (ENSPSNG00000020863) #21	YIPF3 (ENSPSNG00000020740) #22	LRRC73 (ENSPSNG00000020698) #23	TJAP1 (ENSPSNG00000020662) #24	DLK2 (ENSPSNG00000020605) #25	ABCC10 (ENSPSNG00000020536) #26	ZNF318 (ENSPSNG00000020437) #27	CRIP3 (ENSPSNG00000020368) #28	SLC22A7 (ENSPSNG00000020232) #29	TTBK1 (ENSPSNG00000020172) #31	DNPH1 (ENSPSNG00000020109) #32	CUL9 (ENSPSNG00000017060) #33	SRF (ENSPSNG00000016782) #34	PTK7 (ENSPSNG00000016551) #35	KLC4 (ENSPSNG00000016174) #36	MRPL2 (ENSPSNG00000015994) #37	CUL7 (ENSPSNG00000015864) ##33
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048.f #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b.c #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Narwhal	MODERN SPECIES	310	SLC35B2 (ENSMMNG00015009735)	ENSMMNG00015009748 ##7	SLC29A1 (ENSMMNG00015009769) #8	MYMX (ENSMMNG00015009791) #9	CAPN11 (ENSMMNG00015009805) #10	TMEM63B (ENSMMNG00015009841) #11	MRPL14 (ENSMMNG00015009865) #12	VEGFA (ENSMMNG00015009915) #14	MRPS18A (ENSMMNG00015009954) #15	RSPH9 (ENSMMNG00015009969) #16	MAD2L1BP (ENSMMNG00015009979) #17	GTPBP2 (ENSMMNG00015009992) #18	POLH (ENSMMNG00015010012) #19	XPO5 (ENSMMNG00015010045) #20	POLR1C (ENSMMNG00015010142) #21	YIPF3 (ENSMMNG00015010162) #22	LRRC73 (ENSMMNG00015010202) #23	TJAP1 (ENSMMNG00015010214) #24	ENSMMNG00015010222	DLK2 (ENSMMNG00015010233) #25	ABCC10 (ENSMMNG00015010292) #26	ZNF318 (ENSMMNG00015010415) #27	CRIP3 (ENSMMNG00015010473) #28	SLC22A7 (ENSMMNG00015010512) #29	TTBK1 (ENSMMNG00015010569) #31	ENSMMNG00015010617 #32	CUL9 (ENSMMNG00015010945) #33	SRF (ENSMMNG00015011705) #34	PTK7 (ENSMMNG00015011763) #35	KLC4 (ENSMMNG00015011828) #36	MRPL2 (ENSMMNG00015011886) #37
Beluga whale	MODERN SPECIES	8	HSP90AB1 (ENSDLEG00000000345) ##7	SLC29A1 (ENSDLEG00000000310) #8	MYMX (ENSDLEG00000000300) #9	CAPN11 (ENSDLEG00000000227) #10	TMEM63B (ENSDLEG00000000075) #11	MRPL14 (ENSDLEG00000014995) #12	VEGFA (ENSDLEG00000014948) #14	MRPS18A (ENSDLEG00000014862) #15	RSPH9 (ENSDLEG00000014838) #16	MAD2L1BP (ENSDLEG00000014832) #17	GTPBP2 (ENSDLEG00000014789) #18	POLH (ENSDLEG00000014779) #19	ENSDLEG00000014771 #20	ENSDLEG00000014725 #20	POLR1C (ENSDLEG00000014677) #21	YIPF3 (ENSDLEG00000014644) #22	LRRC73 (ENSDLEG00000014586) #23	TJAP1 (ENSDLEG00000014550) #24	DLK2 (ENSDLEG00000014516) #25	ABCC10 (ENSDLEG00000014264) #26	ZNF318 (ENSDLEG00000014114) #27	CRIP3 (ENSDLEG00000014037) #28	ENSDLEG00000014003 #29	ENSDLEG00000013988 #29	ENSDLEG00000013865 #31	DNPH1 (ENSDLEG00000013851) #32	CUL9 (ENSDLEG00000013572) #33	SRF (ENSDLEG00000013532) #34	PTK7 (ENSDLEG00000013064) #35	KLC4 (ENSDLEG00000012979) #36	MRPL2 (ENSDLEG00000012957) #37
Sperm whale	MODERN SPECIES	1018														ENSPCTG00005012363 #20	POLR1C (ENSPCTG00005012391) #21	YIPF3 (ENSPCTG00005012464) #22
Blue whale	MODERN SPECIES	2	SLC35B2 (ENSBMSG00010018830)	ENSBMSG00010018890 ##7	SLC29A1 (ENSBMSG00010018936) #8	MYMX (ENSBMSG00010018956) #9	CAPN11 (ENSBMSG00010019043) #10	TMEM63B (ENSBMSG00010019402) #11	MRPL14 (ENSBMSG00010019442) #12	VEGFA (ENSBMSG00010019559) #14	MRPS18A (ENSBMSG00010020183) #15	RSPH9 (ENSBMSG00010020198) #16	MAD2L1BP (ENSBMSG00010020207) #17	GTPBP2 (ENSBMSG00010020226) #18	POLH (ENSBMSG00010020260) #19	XPO5 (ENSBMSG00010020321) #20	POLR1C (ENSBMSG00010020382) #21	YIPF3 (ENSBMSG00010020476) #22	LRRC73 (ENSBMSG00010020508) #23	ENSBMSG00010020526 #24	ENSBMSG00010020540	DLK2 (ENSBMSG00010020550) #25	ABCC10 (ENSBMSG00010020569) #26	ZNF318 (ENSBMSG00010020591) #27	CRIP3 (ENSBMSG00010020626) #28	SLC22A7 (ENSBMSG00010020677) #29	TTBK1 (ENSBMSG00010020721) #31	ENSBMSG00010020771 #32	CUL9 (ENSBMSG00010020813) #33	SRF (ENSBMSG00010020833) #34	PTK7 (ENSBMSG00010020901) #35	KLC4 (ENSBMSG00010009441) #36	MRPL2 (ENSBMSG00010009514) #37
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Yarkand deer	MODERN SPECIES	30	ENSCHYG00000003288 ##7	SLC29A1 (ENSCHYG00000003261) #8	MYMX (ENSCHYG00000003237) #9	CAPN11 (ENSCHYG00000003195) #10	TMEM63B (ENSCHYG00000003109) #11	MRPL14 (ENSCHYG00000003077) #12	ENSCHYG00000003034	VEGFA (ENSCHYG00000002863) #14	MRPS18A (ENSCHYG00000002800) #15	RSPH9 (ENSCHYG00000002772) #16	ENSCHYG00000002760 #17	GTPBP2 (ENSCHYG00000002731) #18	POLH (ENSCHYG00000002691) #19	XPO5 (ENSCHYG00000002599) #20	POLR1C (ENSCHYG00000002490) #21	YIPF3 (ENSCHYG00000002418) #22	LRRC73 (ENSCHYG00000002399) #23	TJAP1 (ENSCHYG00000002358) #24	DLK2 (ENSCHYG00000002324) #25	ABCC10 (ENSCHYG00000002262) #26	ZNF318 (ENSCHYG00000002228) #27	CRIP3 (ENSCHYG00000002176) #28	SLC22A7 (ENSCHYG00000002139) #29	TTBK1 (ENSCHYG00000002102) #31	DNPH1 (ENSCHYG00000002079) #32	CUL9 (ENSCHYG00000001955) #33	SRF (ENSCHYG00000001910) #34	PTK7 (ENSCHYG00000001713) #35	KLC4 (ENSCHYG00000001448) #36	MRPL2 (ENSCHYG00000001334) #37	CUL7 (ENSCHYG00000001274) ##33
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Siberian musk deer	MODERN SPECIES	355	SLC35B2 (ENSMMSG00000008039)	ENSMMSG00000007967 ##7	SLC29A1 (ENSMMSG00000007929) #8	MYMX (ENSMMSG00000007910) #9	CAPN11 (ENSMMSG00000007786) #10	TMEM63B (ENSMMSG00000007690) #11	MRPL14 (ENSMMSG00000007639) #12	VEGFA (ENSMMSG00000007348) #14	MRPS18A (ENSMMSG00000007259) #15	RSPH9 (ENSMMSG00000007231) #16	MAD2L1BP (ENSMMSG00000007200) #17	GTPBP2 (ENSMMSG00000007098) #18	POLH (ENSMMSG00000007030) #19	XPO5 (ENSMMSG00000006908) #20	POLR1C (ENSMMSG00000006780) #21	YIPF3 (ENSMMSG00000006698) #22	LRRC73 (ENSMMSG00000006666) #23	TJAP1 (ENSMMSG00000006591) #24	DLK2 (ENSMMSG00000006539) #25	ABCC10 (ENSMMSG00000006490) #26	ZNF318 (ENSMMSG00000006414) #27	CRIP3 (ENSMMSG00000006365) #28	SLC22A7 (ENSMMSG00000006264) #29	ENSMMSG00000006214 #31	CUL9 (ENSMMSG00000005991) #33	SRF (ENSMMSG00000005948) #34	PTK7 (ENSMMSG00000005723) #35	KLC4 (ENSMMSG00000005498) #36	MRPL2 (ENSMMSG00000005368) #37	CUL7 (ENSMMSG00000005254) ##33	KLHDC3 (ENSMMSG00000005069)
Bovidae	ANCESTRAL SPECIES	13	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000165752	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Caprinae	ANCESTRAL SPECIES	16	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000165752	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Goat	MODERN SPECIES	15	ENSCHIG00000017807 ##7	SLC29A1 (ENSCHIG00000022410) #8	CAPN11 (ENSCHIG00000010362) #10	ENSCHIG00000017964	TMEM63B (ENSCHIG00000010295) #11	MRPL14 (ENSCHIG00000016433) #12	VEGFA (ENSCHIG00000009242) #14	MRPS18A (ENSCHIG00000013039) #15	ENSCHIG00000006683	RSPH9 (ENSCHIG00000014085) #16	MAD2L1BP (ENSCHIG00000008563) #17	GTPBP2 (ENSCHIG00000011328) #18	POLH (ENSCHIG00000010328) #19	XPO5 (ENSCHIG00000011271) #20	POLR1C (ENSCHIG00000004352) #21	YIPF3 (ENSCHIG00000012623) #22	TJAP1 (ENSCHIG00000021772) #24	LRRC73 (ENSCHIG00000022549) #23	DLK2 (ENSCHIG00000005158) #25	ABCC10 (ENSCHIG00000016995) #26	ZNF318 (ENSCHIG00000003026) #27	CRIP3 (ENSCHIG00000016523) #28	SLC22A7 (ENSCHIG00000017192) #29	TTBK1 (ENSCHIG00000011661) #31	DNPH1 (ENSCHIG00000014711) #32	CUL9 (ENSCHIG00000014269) #33	SRF (ENSCHIG00000012065) #34	PTK7 (ENSCHIG00000019771) #35	KLC4 (ENSCHIG00000010669) #36	MRPL2 (ENSCHIG00000017416) #37	CUL7 (ENSCHIG00000015144) ##33
Rambouillet Sheep	MODERN SPECIES	12	HSP90AB1 (ENSOARG00020024426) ##7	SLC29A1 (ENSOARG00020024417) #8	MYMX (ENSOARG00020024406) #9	CAPN11 (ENSOARG00020024352) #10	TMEM63B (ENSOARG00020024328) #11	MRPL14 (ENSOARG00020024309) #12	VEGFA (ENSOARG00020022857) #14	ENSOARG00020022732	MRPS18A (ENSOARG00020022680) #15	RSPH9 (ENSOARG00020022645) #16	MAD2L1BP (ENSOARG00020022622) #17	GTPBP2 (ENSOARG00020022529) #18	POLH (ENSOARG00020022497) #19	XPO5 (ENSOARG00020022433) #20	POLR1C (ENSOARG00020022290) #21	YIPF3 (ENSOARG00020022197) #22	LRRC73 (ENSOARG00020022144) #23	TJAP1 (ENSOARG00020021973) #24	DLK2 (ENSOARG00020021941) #25	ABCC10 (ENSOARG00020021781) #26	ZNF318 (ENSOARG00020021662) #27	CRIP3 (ENSOARG00020021515) #28	SLC22A7 (ENSOARG00020021341) #29	TTBK1 (ENSOARG00020020989) #31	DNPH1 (ENSOARG00020020949) #32	CUL9 (ENSOARG00020019931) #33	SRF (ENSOARG00020019777) #34	KLC4 (ENSOARG00020019543) #36	MRPL2 (ENSOARG00020019391) #37	CUL7 (ENSOARG00020019219) ##33	RRP36 (ENSOARG00020019171)
Bovinae	ANCESTRAL SPECIES	9	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000165752	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216.d.b #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
American bison	MODERN SPECIES	3345	ENSBBBG00000009167 ##7	SLC29A1 (ENSBBBG00000019250) #8	MYMX (ENSBBBG00000019201) #9	CAPN11 (ENSBBBG00000004944) #10	ENSBBBG00000019176	TMEM63B (ENSBBBG00000019165) #11	MRPL14 (ENSBBBG00000019131) #12	VEGFA (ENSBBBG00000004895) #14	MRPS18A (ENSBBBG00000019022) #15	RSPH9 (ENSBBBG00000004846) #16	MAD2L1BP (ENSBBBG00000004843) #17	GTPBP2 (ENSBBBG00000004840) #18	POLH (ENSBBBG00000004824) #19	XPO5 (ENSBBBG00000018959) #20	POLR1C (ENSBBBG00000018932) #21	YIPF3 (ENSBBBG00000004770) #22	LRRC73 (ENSBBBG00000018869) #23	ENSBBBG00000018854	DLK2 (ENSBBBG00000018845) #25	ABCC10 (ENSBBBG00000018811) #26	ZNF318 (ENSBBBG00000004718) #27	CRIP3 (ENSBBBG00000004705) #28	SLC22A7 (ENSBBBG00000018739) #29	TTBK1 (ENSBBBG00000018712) #31	ENSBBBG00000018693 #32	CUL9 (ENSBBBG00000018662) #33	SRF (ENSBBBG00000018544) #34	PTK7 (ENSBBBG00000004566) #35	KLC4 (ENSBBBG00000018482) #36	MRPL2 (ENSBBBG00000018394) #37	ENSBBBG00000018349 ##33
Bos	ANCESTRAL SPECIES	17	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000165752	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216.d.b #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Bos_a	ANCESTRAL SPECIES	11	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000165752	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216.d.b #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Wild yak	MODERN SPECIES	1156	ENSBMUG00000011676 ##7	SLC29A1 (ENSBMUG00000011739) #8	MYMX (ENSBMUG00000011878) #9	CAPN11 (ENSBMUG00000011894) #10	ENSBMUG00000011908	TMEM63B (ENSBMUG00000011927) #11	MRPL14 (ENSBMUG00000011949) #12	ENSBMUG00000011996 #14	MRPS18A (ENSBMUG00000012027) #15	RSPH9 (ENSBMUG00000012049) #16	MAD2L1BP (ENSBMUG00000012054) #17	GTPBP2 (ENSBMUG00000012068) #18	POLH (ENSBMUG00000012084) #19	XPO5 (ENSBMUG00000012108) #20	POLR1C (ENSBMUG00000012129) #21	YIPF3 (ENSBMUG00000012145) #22	LRRC73 (ENSBMUG00000012153) #23	TJAP1 (ENSBMUG00000012199) #24	DLK2 (ENSBMUG00000012238) #25	ABCC10 (ENSBMUG00000012259) #26	ZNF318 (ENSBMUG00000012273) #27	CRIP3 (ENSBMUG00000012319) #28	SLC22A7 (ENSBMUG00000012334) #29	TTBK1 (ENSBMUG00000012411) #31	DNPH1 (ENSBMUG00000012524) #32	CUL9 (ENSBMUG00000012576) #33	SRF (ENSBMUG00000012595) #34	PTK7 (ENSBMUG00000012742) #35	KLC4 (ENSBMUG00000012876) #36	MRPL2 (ENSBMUG00000012933) #37	CUL7 (ENSBMUG00000012982) ##33
Domestic yak	MODERN SPECIES	16	SLC35B2 (ENSBGRG00000007502)	SLC29A1 (ENSBGRG00000007719) #8	MYMX (ENSBGRG00000008830) #9	ENSBGRG00000008841	TMEM63B (ENSBGRG00000008917) #11	ENSBGRG00000009756	ENSBGRG00000009813 #12	VEGFA (ENSBGRG00000010227) #14	ENSBGRG00000010432 #15	RSPH9 (ENSBGRG00000010763) #16	MAD2L1BP (ENSBGRG00000010868) #17	GTPBP2 (ENSBGRG00000011005) #18	POLH (ENSBGRG00000011380) #19	XPO5 (ENSBGRG00000011470) #20	POLR1C (ENSBGRG00000011968) #21	YIPF3 (ENSBGRG00000012257) #22	LRRC73 (ENSBGRG00000012584) #23	TJAP1 (ENSBGRG00000012682) #24	DLK2 (ENSBGRG00000012938) #25	ABCC10 (ENSBGRG00000012998) #26	ZNF318 (ENSBGRG00000013542) #27	CRIP3 (ENSBGRG00000013743) #28	SLC22A7 (ENSBGRG00000014004) #29	ENSBGRG00000014322 #31	ENSBGRG00000014485 #32	SRF (ENSBGRG00000018179) #34	PTK7 (ENSBGRG00000018313) #35	KLC4 (ENSBGRG00000019525) #36	MRPL2 (ENSBGRG00000019931) #37	CUL7 (ENSBGRG00000020196) ##33	RRP36 (ENSBGRG00000020475)
Bos_b	ANCESTRAL SPECIES	8	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000165752	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216.d.b #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Cow	MODERN SPECIES	15	SLC29A1 (ENSBTAG00000015131) #8	MYMX (ENSBTAG00000049369) #9	ENSBTAG00000053551 #10	ENSBTAG00000050117	CAPN11 (ENSBTAG00000021066) #10	TMEM63B (ENSBTAG00000032680) #11	ENSBTAG00000050249	VEGFA (ENSBTAG00000005339) #14	MRPS18A (ENSBTAG00000025571) #15	RSPH9 (ENSBTAG00000009549) #16	MAD2L1BP (ENSBTAG00000009548) #17	GTPBP2 (ENSBTAG00000006016) #18	POLH (ENSBTAG00000006015) #19	XPO5 (ENSBTAG00000018970) #20	POLR1C (ENSBTAG00000018969) #21	YIPF3 (ENSBTAG00000018967) #22	LRRC73 (ENSBTAG00000025554) #23	TJAP1 (ENSBTAG00000011189) #24	DLK2 (ENSBTAG00000005850) #25	ABCC10 (ENSBTAG00000005842) #26	ZNF318 (ENSBTAG00000010217) #27	CRIP3 (ENSBTAG00000006357) #28	SLC22A7 (ENSBTAG00000006350) #29	TTBK1 (ENSBTAG00000046107) #31	DNPH1 (ENSBTAG00000019913) #32	CUL9 (ENSBTAG00000019908) #33	SRF (ENSBTAG00000012777) #34	PTK7 (ENSBTAG00000012761) #35	KLC4 (ENSBTAG00000012755) #36	MRPL2 (ENSBTAG00000012752) #37	CUL7 (ENSBTAG00000012749) ##33
Hybrid Bos Indicus	MODERN SPECIES	15	SLC35B2 (ENSBIXG00005028950)	ENSBIXG00005005101 ##7	SLC29A1 (ENSBIXG00005029077) #8	MYMX (ENSBIXG00005029092) #9	ENSBIXG00005001907	TMEM63B (ENSBIXG00005029176) #11	ENSBIXG00005029198 #12	VEGFA (ENSBIXG00005029350) #14	MRPS18A (ENSBIXG00005029321) #15	RSPH9 (ENSBIXG00005029313) #16	MAD2L1BP (ENSBIXG00005029309) #17	GTPBP2 (ENSBIXG00005029285) #18	POLH (ENSBIXG00005029268) #19	XPO5 (ENSBIXG00005000022) #20	POLR1C (ENSBIXG00005007888) #21	YIPF3 (ENSBIXG00005007907) #22	LRRC73 (ENSBIXG00005007915) #23	TJAP1 (ENSBIXG00005007955) #24	DLK2 (ENSBIXG00005007975) #25	ABCC10 (ENSBIXG00005007997) #26	ZNF318 (ENSBIXG00005008030) #27	CRIP3 (ENSBIXG00005008099) #28	SLC22A7 (ENSBIXG00005000127) #29	ENSBIXG00005008144 #32	ENSBIXG00005008153 #32	CUL9 (ENSBIXG00005008227) #33	SRF (ENSBIXG00005008263) #34	ENSBIXG00005008279	PTK7 (ENSBIXG00005008336) #35	KLC4 (ENSBIXG00005008424) #36	MRPL2 (ENSBIXG00005008468) #37
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Microbat	MODERN SPECIES	1255								VEGFA (ENSMLUG00000014519) #14	MRPS18A (ENSMLUG00000017755) #15	ENSMLUG00000017754 #16	MAD2L1BP (ENSMLUG00000016690) #17	GTPBP2 (ENSMLUG00000017753) #18	POLH (ENSMLUG00000003839) #19	XPO5 (ENSMLUG00000017752) #20	POLR1C (ENSMLUG00000017751) #21	YIPF3 (ENSMLUG00000017750) #22	LRRC73 (ENSMLUG00000017749) #23	TJAP1 (ENSMLUG00000026181) #24	DLK2 (ENSMLUG00000017748) #25	ABCC10 (ENSMLUG00000017747) #26	ZNF318 (ENSMLUG00000009010) #27	CRIP3 (ENSMLUG00000008998) #28	SLC22A7 (ENSMLUG00000008975) #29	TTBK1 (ENSMLUG00000008941) #31	CUL9 (ENSMLUG00000008847) #33	SRF (ENSMLUG00000008828) #34	PTK7 (ENSMLUG00000012218) #35	KLC4 (ENSMLUG00000012206) #36	MRPL2 (ENSMLUG00000012198) #37	CUL7 (ENSMLUG00000012163) ##33	KLHDC3 (ENSMLUG00000012143)
Greater horseshoe bat	MODERN SPECIES	21	SLC35B2 (ENSRFEG00010005829)	ENSRFEG00010005791 ##7	SLC29A1 (ENSRFEG00010005739) #8	MYMX (ENSRFEG00010005710) #9	CAPN11 (ENSRFEG00010005643) #10	TMEM63B (ENSRFEG00010005508) #11	MRPL14 (ENSRFEG00010005426) #12	ENSRFEG00010005409	VEGFA (ENSRFEG00010005317) #14	MRPS18A (ENSRFEG00010005273) #15	RSPH9 (ENSRFEG00010005257) #16	MAD2L1BP (ENSRFEG00010005237) #17	GTPBP2 (ENSRFEG00010005213) #18	POLH (ENSRFEG00010005154) #19	XPO5 (ENSRFEG00010005070) #20	YIPF3 (ENSRFEG00010005052) #22	POLR1C (ENSRFEG00010005036) #21	LRRC73 (ENSRFEG00010005019) #23	TJAP1 (ENSRFEG00010005002) #24	DLK2 (ENSRFEG00010004985) #25	ABCC10 (ENSRFEG00010004971) #26	ZNF318 (ENSRFEG00010004955) #27	CRIP3 (ENSRFEG00010004932) #28	SLC22A7 (ENSRFEG00010004909) #29	TTBK1 (ENSRFEG00010004875) #31	DNPH1 (ENSRFEG00010003593) #32	CUL9 (ENSRFEG00010003523) #33	SRF (ENSRFEG00010003481) #34	PTK7 (ENSRFEG00010003407) #35	KLC4 (ENSRFEG00010003303) #36	MRPL2 (ENSRFEG00010003195) #37
Megabat	MODERN SPECIES	333											MAD2L1BP (ENSPVAG00000005700) #17	GTPBP2 (ENSPVAG00000005698) #18	POLH (ENSPVAG00000005696) #19	XPO5 (ENSPVAG00000005691) #20	POLR1C (ENSPVAG00000005689) #21	YIPF3 (ENSPVAG00000005688) #22	LRRC73 (ENSPVAG00000005686) #23	TJAP1 (ENSPVAG00000005684) #24	DLK2 (ENSPVAG00000005683) #25	ABCC10 (ENSPVAG00000005677) #26
Equus	ANCESTRAL SPECIES	10	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Donkey	MODERN SPECIES	28	SLC35B2 (ENSEASG00005034890)	HSP90AB1 (ENSEASG00005003711) #7	SLC29A1 (ENSEASG00005003698) #8	MYMX (ENSEASG00005036007) #9	CAPN11 (ENSEASG00005003548) #10	TMEM63B (ENSEASG00005003502) #11	ENSEASG00005003494 #12	VEGFA (ENSEASG00005003487) #14	RSPH9 (ENSEASG00005003482) #16	MRPS18A (ENSEASG00005035068) #15	MAD2L1BP (ENSEASG00005003479) #17	GTPBP2 (ENSEASG00005003383) #18	POLH (ENSEASG00005003364) #19	XPO5 (ENSEASG00005003351) #20	POLR1C (ENSEASG00005003338) #21	YIPF3 (ENSEASG00005003330) #22	LRRC73 (ENSEASG00005003324) #23	TJAP1 (ENSEASG00005003315) #24	DLK2 (ENSEASG00005034606) #25	ABCC10 (ENSEASG00005003283) #26	CRIP3 (ENSEASG00005036888) #28	SLC22A7 (ENSEASG00005003255) #29	TTBK1 (ENSEASG00005003245) #31	DNPH1 (ENSEASG00005029866) #32	CUL9 (ENSEASG00005003226) #33	SRF (ENSEASG00005003218) #34	PTK7 (ENSEASG00005003204) #35	KLC4 (ENSEASG00005003191) #36	MRPL2 (ENSEASG00005003182) #37	CUL7 (ENSEASG00005003176) ##33	RRP36 (ENSEASG00005003169)
Horse	MODERN SPECIES	12	TMEM151B (ENSECAG00000000710)	NFKBIE (ENSECAG00000019914)	SLC35B2 (ENSECAG00000017860)	HSP90AB1 (ENSECAG00000008511) #7	SLC29A1 (ENSECAG00000008083) #8	CAPN11 (ENSECAG00000000758) #10	TMEM63B (ENSECAG00000013055) #11	MRPL14 (ENSECAG00000012726) #12	VEGFA (ENSECAG00000009402) #14	RSPH9 (ENSECAG00000000696) #16	MRPS18A (ENSECAG00000004870) #15	MAD2L1BP (ENSECAG00000025158) #17	GTPBP2 (ENSECAG00000024984) #18	POLH (ENSECAG00000024522) #19	XPO5 (ENSECAG00000032788) #20	YIPF3 (ENSECAG00000016807) #22	POLR1C (ENSECAG00000023516) #21	LRRC73 (ENSECAG00000015814) #23	TJAP1 (ENSECAG00000013159) #24	DLK2 (ENSECAG00000011919) #25	ABCC10 (ENSECAG00000005169) #26	ZNF318 (ENSECAG00000001119) #27	CRIP3 (ENSECAG00000017732) #28	SLC22A7 (ENSECAG00000008551) #29	TTBK1 (ENSECAG00000007438) #31	DNPH1 (ENSECAG00000006660) #32	CUL9 (ENSECAG00000011751) #33	SRF (ENSECAG00000009068) #34	PTK7 (ENSECAG00000011101) #35	KLC4 (ENSECAG00000022228) #36	MRPL2 (ENSECAG00000020273) #37
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Tiger	MODERN SPECIES	220	SLC35B2 (ENSPTIG00000013686)	HSP90AB1 (ENSPTIG00000015152) #7	SLC29A1 (ENSPTIG00000017507) #8	MYMX (ENSPTIG00000006118) #9	CAPN11 (ENSPTIG00000019831) #10	TMEM63B (ENSPTIG00000005040) #11	MRPL14 (ENSPTIG00000019208) #12	ENSPTIG00000020469 #14	MRPS18A (ENSPTIG00000001653) #15	RSPH9 (ENSPTIG00000005598) #16	MAD2L1BP (ENSPTIG00000006700) #17	GTPBP2 (ENSPTIG00000007044) #18	POLH (ENSPTIG00000009782) #19	XPO5 (ENSPTIG00000011671) #20	POLR1C (ENSPTIG00000014813) #21	YIPF3 (ENSPTIG00000015815) #22	LRRC73 (ENSPTIG00000016671) #23	TJAP1 (ENSPTIG00000017372) #24	DLK2 (ENSPTIG00000018767) #25	ABCC10 (ENSPTIG00000019297) #26	ZNF318 (ENSPTIG00000009921) #27	CRIP3 (ENSPTIG00000011347) #28	SLC22A7 (ENSPTIG00000012865) #29	TTBK1 (ENSPTIG00000016224) #31	DNPH1 (ENSPTIG00000017589) #32	CUL9 (ENSPTIG00000018185) #33	SRF (ENSPTIG00000008482) #34	PTK7 (ENSPTIG00000009629) #35	KLC4 (ENSPTIG00000014698) #36	MRPL2 (ENSPTIG00000019266) #37	CUL7 (ENSPTIG00000020970) ##33
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
leopard	MODERN SPECIES	30	SLC35B2 (ENSPPRG00000024707)	HSP90AB1 (ENSPPRG00000024108) #7	SLC29A1 (ENSPPRG00000023900) #8	MYMX (ENSPPRG00000014823) #9	CAPN11 (ENSPPRG00000023373) #10	TMEM63B (ENSPPRG00000000314) #11	MRPL14 (ENSPPRG00000000343) #12	VEGFA (ENSPPRG00000004713) #14	MRPS18A (ENSPPRG00000006429) #15	RSPH9 (ENSPPRG00000006715) #16	MAD2L1BP (ENSPPRG00000007127) #17	GTPBP2 (ENSPPRG00000007313) #18	POLH (ENSPPRG00000007763) #19	XPO5 (ENSPPRG00000009028) #20	POLR1C (ENSPPRG00000009760) #21	YIPF3 (ENSPPRG00000010151) #22	LRRC73 (ENSPPRG00000010283) #23	ENSPPRG00000010486 #24	ENSPPRG00000011131 #24	DLK2 (ENSPPRG00000011806) #25	ABCC10 (ENSPPRG00000012637) #26	ZNF318 (ENSPPRG00000014156) #27	CRIP3 (ENSPPRG00000020042) #28	SLC22A7 (ENSPPRG00000022671) #29	TTBK1 (ENSPPRG00000000583) #31	DNPH1 (ENSPPRG00000000794) #32	CUL9 (ENSPPRG00000003699) #33	SRF (ENSPPRG00000004209) #34	PTK7 (ENSPPRG00000008108) #35	KLC4 (ENSPPRG00000011006) #36	MRPL2 (ENSPPRG00000012024) #37
lion	MODERN SPECIES	5	SLC35B2 (ENSPLOG00000001133)	HSP90AB1 (ENSPLOG00000001099) #7	SLC29A1 (ENSPLOG00000001064) #8	MYMX (ENSPLOG00000001047) #9	CAPN11 (ENSPLOG00000000991) #10	TMEM63B (ENSPLOG00000000941) #11	MRPL14 (ENSPLOG00000000912) #12	VEGFA (ENSPLOG00000000793) #14	MRPS18A (ENSPLOG00000000703) #15	RSPH9 (ENSPLOG00000000669) #16	MAD2L1BP (ENSPLOG00000000642) #17	GTPBP2 (ENSPLOG00000000576) #18	POLH (ENSPLOG00000000519) #19	XPO5 (ENSPLOG00000000454) #20	POLR1C (ENSPLOG00000000371) #21	YIPF3 (ENSPLOG00000000311) #22	LRRC73 (ENSPLOG00000000285) #23	TJAP1 (ENSPLOG00000000250) #24	DLK2 (ENSPLOG00000004572) #25	ABCC10 (ENSPLOG00000004547) #26	ZNF318 (ENSPLOG00000004500) #27	CRIP3 (ENSPLOG00000004485) #28	SLC22A7 (ENSPLOG00000004471) #29	TTBK1 (ENSPLOG00000004440) #31	ENSPLOG00000004417 #32	CUL9 (ENSPLOG00000004400) #33	SRF (ENSPLOG00000004381) #34	PTK7 (ENSPLOG00000004352) #35	KLC4 (ENSPLOG00000004281) #36	MRPL2 (ENSPLOG00000004216) #37	CUL7 (ENSPLOG00000004140) ##33
Cat	MODERN SPECIES	236	SLC35B2 (ENSFCAG00000038971)	ENSFCAG00000009764 ##7	MYMX (ENSFCAG00000042737) #9	CAPN11 (ENSFCAG00000009759) #10	TMEM63B (ENSFCAG00000009756) #11	MRPL14 (ENSFCAG00000009755) #12	ENSFCAG00000037864	VEGFA (ENSFCAG00000026462) #14	MRPS18A (ENSFCAG00000036031) #15	RSPH9 (ENSFCAG00000009746) #16	MAD2L1BP (ENSFCAG00000009744) #17	GTPBP2 (ENSFCAG00000009742) #18	POLH (ENSFCAG00000009740) #19	XPO5 (ENSFCAG00000009737) #20	POLR1C (ENSFCAG00000009735) #21	YIPF3 (ENSFCAG00000009731) #22	LRRC73 (ENSFCAG00000033302) #23	DLK2 (ENSFCAG00000030746) #25	ABCC10 (ENSFCAG00000009727) #26	ZNF318 (ENSFCAG00000009726) #27	CRIP3 (ENSFCAG00000009725) #28	SLC22A7 (ENSFCAG00000009724) #29	TTBK1 (ENSFCAG00000009723) #31	DNPH1 (ENSFCAG00000009722) #32	CUL9 (ENSFCAG00000009721) #33	SRF (ENSFCAG00000025180) #34	PTK7 (ENSFCAG00000009719) #35	KLC4 (ENSFCAG00000009718) #36	MRPL2 (ENSFCAG00000028089) #37	CUL7 (ENSFCAG00000009717) ##33	RRP36 (ENSFCAG00000043818)
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Ursidae	ANCESTRAL SPECIES	35	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Ursus	ANCESTRAL SPECIES	28	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Polar bear	MODERN SPECIES	174	SLC35B2 (ENSUMAG00000005353)	SLC29A1 (ENSUMAG00000005359) #8	MYMX (ENSUMAG00000005365) #9	CAPN11 (ENSUMAG00000005384) #10	TMEM63B (ENSUMAG00000005638) #11	MRPL14 (ENSUMAG00000005898) #12	ENSUMAG00000005907 #14	MRPS18A (ENSUMAG00000005910) #15	RSPH9 (ENSUMAG00000005912) #16	MAD2L1BP (ENSUMAG00000005918) #17	ENSUMAG00000005920 #18	POLH (ENSUMAG00000005923) #19	XPO5 (ENSUMAG00000005928) #20	POLR1C (ENSUMAG00000005938) #21	ENSUMAG00000005941	YIPF3 (ENSUMAG00000005949) #22	LRRC73 (ENSUMAG00000005952) #23	TJAP1 (ENSUMAG00000005956) #24	DLK2 (ENSUMAG00000005958) #25	ABCC10 (ENSUMAG00000005978) #26	ZNF318 (ENSUMAG00000006092) #27	CRIP3 (ENSUMAG00000006105) #28	SLC22A7 (ENSUMAG00000006113) #29	ENSUMAG00000006123 #31	DNPH1 (ENSUMAG00000006141) #32	CUL9 (ENSUMAG00000006362) #33	SRF (ENSUMAG00000008409) #34	PTK7 (ENSUMAG00000008520) #35	KLC4 (ENSUMAG00000008716) #36	MRPL2 (ENSUMAG00000008717) #37	ENSUMAG00000008719 ##33
American black bear	MODERN SPECIES	2037												ENSUAMG00000025609 #19	ENSUAMG00000025608 #20	ENSUAMG00000025603 #20	POLR1C (ENSUAMG00000025602) #21	YIPF3 (ENSUAMG00000025601) #22	LRRC73 (ENSUAMG00000025600) #23	TJAP1 (ENSUAMG00000025599) #24	DLK2 (ENSUAMG00000025597) #25	ABCC10 (ENSUAMG00000025596) #26
Giant Panda	MODERN SPECIES	10	SLC35B2 (ENSAMEG00000023493)	ENSAMEG00000011809 ##7	SLC29A1 (ENSAMEG00000011849) #8	MYMX (ENSAMEG00000019314) #9	CAPN11 (ENSAMEG00000011874) #10	TMEM63B (ENSAMEG00000012014) #11	MRPL14 (ENSAMEG00000012068) #12	VEGFA (ENSAMEG00000027031) #14	MRPS18A (ENSAMEG00000012117) #15	RSPH9 (ENSAMEG00000012125) #16	MAD2L1BP (ENSAMEG00000030881) #17	GTPBP2 (ENSAMEG00000012148) #18	POLH (ENSAMEG00000012174) #19	XPO5 (ENSAMEG00000012197) #20	POLR1C (ENSAMEG00000012205) #21	YIPF3 (ENSAMEG00000012224) #22	LRRC73 (ENSAMEG00000012262) #23	TJAP1 (ENSAMEG00000029348) #24	DLK2 (ENSAMEG00000012279) #25	ABCC10 (ENSAMEG00000012285) #26	ZNF318 (ENSAMEG00000012073) #27	CRIP3 (ENSAMEG00000012312) #28	SLC22A7 (ENSAMEG00000012335) #29	TTBK1 (ENSAMEG00000012383) #31	DNPH1 (ENSAMEG00000012390) #32	CUL9 (ENSAMEG00000012395) #33	SRF (ENSAMEG00000031186) #34	PTK7 (ENSAMEG00000012469) #35	KLC4 (ENSAMEG00000012512) #36	MRPL2 (ENSAMEG00000012573) #37	CUL7 (ENSAMEG00000012585) ##33
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
American mink	MODERN SPECIES	50	SLC35B2 (ENSNVIG00000009456)	SLC29A1 (ENSNVIG00000009505) #8	MYMX (ENSNVIG00000009592) #9	CAPN11 (ENSNVIG00000009603) #10	TMEM63B (ENSNVIG00000009636) #11	MRPL14 (ENSNVIG00000009675) #12	VEGFA (ENSNVIG00000009743) #14	MRPS18A (ENSNVIG00000010007) #15	RSPH9 (ENSNVIG00000010032) #16	MAD2L1BP (ENSNVIG00000010045) #17	ENSNVIG00000010051	GTPBP2 (ENSNVIG00000010057) #18	POLH (ENSNVIG00000010078) #19	XPO5 (ENSNVIG00000010082) #20	POLR1C (ENSNVIG00000010123) #21	YIPF3 (ENSNVIG00000010157) #22	LRRC73 (ENSNVIG00000010186) #23	TJAP1 (ENSNVIG00000010205) #24	DLK2 (ENSNVIG00000010255) #25	ABCC10 (ENSNVIG00000010266) #26	ENSNVIG00000010313	ZNF318 (ENSNVIG00000010318) #27	CRIP3 (ENSNVIG00000010347) #28	SLC22A7 (ENSNVIG00000010392) #29	TTBK1 (ENSNVIG00000010429) #31	DNPH1 (ENSNVIG00000010495) #32	CUL9 (ENSNVIG00000010520) #33	SRF (ENSNVIG00000011434) #34	PTK7 (ENSNVIG00000011458) #35	KLC4 (ENSNVIG00000011605) #36	MRPL2 (ENSNVIG00000011714) #37
Ferret	MODERN SPECIES	166	SLC29A1 (ENSMPUG00000012621) #8	CAPN11 (ENSMPUG00000012627) #10	TMEM63B (ENSMPUG00000012791) #11	MRPL14 (ENSMPUG00000012804) #12	ENSMPUG00000018840	ENSMPUG00000012812	VEGFA (ENSMPUG00000012815) #14	MRPS18A (ENSMPUG00000012868) #15	RSPH9 (ENSMPUG00000012871) #16	MAD2L1BP (ENSMPUG00000012889) #17	GTPBP2 (ENSMPUG00000012898) #18	POLH (ENSMPUG00000012900) #19	ENSMPUG00000012904 #20	ENSMPUG00000012910 #20	POLR1C (ENSMPUG00000012916) #21	YIPF3 (ENSMPUG00000012921) #22	LRRC73 (ENSMPUG00000012974) #23	TJAP1 (ENSMPUG00000012969) #24	DLK2 (ENSMPUG00000013001) #25	ABCC10 (ENSMPUG00000012993) #26	ENSMPUG00000013012	ENSMPUG00000018843	ZNF318 (ENSMPUG00000013027) #27	CRIP3 (ENSMPUG00000013043) #28	SLC22A7 (ENSMPUG00000013035) #29	TTBK1 (ENSMPUG00000013048) #31	CUL9 (ENSMPUG00000013074) #33	SRF (ENSMPUG00000013090) #34	PTK7 (ENSMPUG00000013097) #35	KLC4 (ENSMPUG00000013106) #36	CUL7 (ENSMPUG00000013115) ##33
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493.i #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33	ENSGT00530000064271
Red fox	MODERN SPECIES	7	SLC35B2 (ENSVVUG00000029223)	ENSVVUG00000029141 ##7	SLC29A1 (ENSVVUG00000029123) #8	MYMX (ENSVVUG00000029121) #9	CAPN11 (ENSVVUG00000029116) #10	TMEM63B (ENSVVUG00000029109) #11	MRPL14 (ENSVVUG00000029108) #12	VEGFA (ENSVVUG00000029100) #14	MRPS18A (ENSVVUG00000029092) #15	RSPH9 (ENSVVUG00000029090) #16	MAD2L1BP (ENSVVUG00000029089) #17	GTPBP2 (ENSVVUG00000029087) #18	POLH (ENSVVUG00000029086) #19	XPO5 (ENSVVUG00000028952) #20	POLR1C (ENSVVUG00000028922) #21	YIPF3 (ENSVVUG00000028909) #22	LRRC73 (ENSVVUG00000028906) #23	TJAP1 (ENSVVUG00000028902) #24	DLK2 (ENSVVUG00000028897) #25	ABCC10 (ENSVVUG00000028864) #26	ZNF318 (ENSVVUG00000028861) #27	CRIP3 (ENSVVUG00000028856) #28	TTBK1 (ENSVVUG00000028855) #31	CUL9 (ENSVVUG00000028747) #33	SRF (ENSVVUG00000028693) #34	PTK7 (ENSVVUG00000028602) #35	KLC4 (ENSVVUG00000028214) #36	MRPL2 (ENSVVUG00000028143) #37	CUL7 (ENSVVUG00000027838) ##33	RRP36 (ENSVVUG00000027816)	KLHDC3 (ENSVVUG00000027805)
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493.i #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A.d #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33	ENSGT00530000064271
Dog	MODERN SPECIES	3	SLC35B2 (ENSCAFG00845011652)	ENSCAFG00845011600 #7	SLC29A1 (ENSCAFG00845011282) #8	MYMX (ENSCAFG00845011194) #9	CAPN11 (ENSCAFG00845011002) #10	TMEM63B (ENSCAFG00845010814) #11	MRPL14 (ENSCAFG00845010714) #12	VEGFA (ENSCAFG00845010533) #14	MRPS18A (ENSCAFG00845010419) #15	RSPH9 (ENSCAFG00845010362) #16	MAD2L1BP (ENSCAFG00845010340) #17	GTPBP2 (ENSCAFG00845010282) #18	POLH (ENSCAFG00845010148) #19	XPO5 (ENSCAFG00845009741) #20	POLR1C (ENSCAFG00845009541) #21	YIPF3 (ENSCAFG00845009430) #22	LRRC73 (ENSCAFG00845009293) #23	TJAP1 (ENSCAFG00845009226) #24	DLK2 (ENSCAFG00845009184) #25	ABCC10 (ENSCAFG00845009128) #26	ZNF318 (ENSCAFG00845009007) #27	CRIP3 (ENSCAFG00845008907) #28	TTBK1 (ENSCAFG00845008729) #31	DNPH1 (ENSCAFG00845008662) #32	CUL9 (ENSCAFG00845008524) #33	SRF (ENSCAFG00845008446) #34	PTK7 (ENSCAFG00845008248) #35	KLC4 (ENSCAFG00845007804) #36	MRPL2 (ENSCAFG00845007665) #37	CUL7 (ENSCAFG00845007591) ##33	KLHDC3 (ENSCAFG00845007294)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	276	SLC29A1 (ENSCAFG00020012121) #8	MYMX (ENSCAFG00020012114) #9	ENSCAFG00020012105 #10	ENSCAFG00020012093 #10	TMEM63B (ENSCAFG00020012080) #11	MRPL14 (ENSCAFG00020012077) #12	VEGFA (ENSCAFG00020012066) #14	MRPS18A (ENSCAFG00020012064) #15	RSPH9 (ENSCAFG00020012059) #16	MAD2L1BP (ENSCAFG00020012055) #17	GTPBP2 (ENSCAFG00020012050) #18	POLH (ENSCAFG00020012045) #19	ENSCAFG00020012040 #20	ENSCAFG00020012020 #20	POLR1C (ENSCAFG00020012018) #21	ENSCAFG00020012005 #22	ENSCAFG00020011999 #23	ENSCAFG00020011996 #24	DLK2 (ENSCAFG00020011986) #25	ENSCAFG00020011962 #26	ZNF318 (ENSCAFG00020011950) #27	CRIP3 (ENSCAFG00020011945) #28	TTBK1 (ENSCAFG00020011920) #31	DNPH1 (ENSCAFG00020011915) #32	CUL9 (ENSCAFG00020011438) #33	SRF (ENSCAFG00020011367) #34	PTK7 (ENSCAFG00020011360) #35	KLC4 (ENSCAFG00020011139) #36	MRPL2 (ENSCAFG00020011096) #37	CUL7 (ENSCAFG00020011080) ##33	RRP36 (ENSCAFG00020011057)
Dingo	MODERN SPECIES	272																ENSCAFG00020010874 #22	ENSCAFG00020010863 #23	ENSCAFG00020010848 #24	ENSCAFG00020010844 #26
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153766.A #22
Hedgehog	MODERN SPECIES	3451																YIPF3 (ENSEEUG00000012721) #22
Common shrew	MODERN SPECIES	2594															XPO5 (ENSSARG00000001349) #20	YIPF3 (ENSSARG00000001336) #22	ENSSARG00000001312 #24
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Xenarthra	ANCESTRAL SPECIES	231								ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31
Armadillo	MODERN SPECIES	3031								VEGFA (ENSDNOG00000039695) #14	MRPS18A (ENSDNOG00000035755) #15	RSPH9 (ENSDNOG00000007094) #16	MAD2L1BP (ENSDNOG00000032600) #17	GTPBP2 (ENSDNOG00000037272) #18	POLH (ENSDNOG00000047483) #19	XPO5 (ENSDNOG00000009443) #20	POLR1C (ENSDNOG00000042693) #21	YIPF3 (ENSDNOG00000034003) #22	LRRC73 (ENSDNOG00000009434) #23	ENSDNOG00000036766 #24	ABCC10 (ENSDNOG00000010523) #26	ZNF318 (ENSDNOG00000031395) #27	CRIP3 (ENSDNOG00000044010) #28	SLC22A7 (ENSDNOG00000031145) #29	TTBK1 (ENSDNOG00000044367) #31
Afrotheria	ANCESTRAL SPECIES	24	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Tenrec	MODERN SPECIES	8397												POLH (ENSETEG00000010819) #19	GTPBP2 (ENSETEG00000010814) #18	XPO5 (ENSETEG00000010810) #20	POLR1C (ENSETEG00000010807) #21	YIPF3 (ENSETEG00000010804) #22	LRRC73 (ENSETEG00000010799) #23
Afrotheria_a	ANCESTRAL SPECIES	23	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.a.a #7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00490000044373 #9	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000161543 #24	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.e #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.f ##33
Hyrax	MODERN SPECIES	2715													GTPBP2 (ENSPCAG00000005341) #18	POLH (ENSPCAG00000005241) #19	XPO5 (ENSPCAG00000005038) #20	YIPF3 (ENSPCAG00000004973) #22	LRRC73 (ENSPCAG00000004927) #23	TJAP1 (ENSPCAG00000004887) #24
Elephant	MODERN SPECIES	1	HSP90AB1 (ENSLAFG00000028485) #7	SLC29A1 (ENSLAFG00000010303) #8	MYMX (ENSLAFG00000027922) #9	ENSLAFG00000028863 #10	ENSLAFG00000027870 #10	TMEM63B (ENSLAFG00000015940) #11	MRPL14 (ENSLAFG00000015932) #12	VEGFA (ENSLAFG00000032226) #14	MRPS18A (ENSLAFG00000001168) #15	RSPH9 (ENSLAFG00000001166) #16	MAD2L1BP (ENSLAFG00000025941) #17	GTPBP2 (ENSLAFG00000022990) #18	POLH (ENSLAFG00000000571) #19	XPO5 (ENSLAFG00000000567) #20	POLR1C (ENSLAFG00000026248) #21	YIPF3 (ENSLAFG00000000565) #22	LRRC73 (ENSLAFG00000017215) #23	TJAP1 (ENSLAFG00000017208) #24	DLK2 (ENSLAFG00000003181) #25	ABCC10 (ENSLAFG00000003182) #26	ZNF318 (ENSLAFG00000006589) #27	ENSLAFG00000006584 #28	ENSLAFG00000027999 #29	TTBK1 (ENSLAFG00000017449) #31	DNPH1 (ENSLAFG00000010299) #32	CUL9 (ENSLAFG00000010286) #33	SRF (ENSLAFG00000010278) #34	PTK7 (ENSLAFG00000017257) #35	KLC4 (ENSLAFG00000022928) #36	MRPL2 (ENSLAFG00000017251) #37	CUL7 (ENSLAFG00000017234) ##33
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000013762.b.a	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082 #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.g #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.h #33
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00390000013762.b.a	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082.g #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.g #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.h #33
Diprotodontia	ANCESTRAL SPECIES	37	ENSGT00390000013762.b.a	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b.e #8	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082.g #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.g #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.h #33
Diprotodontia_a	ANCESTRAL SPECIES	36	ENSGT00390000013762.b.a	ENSGT00940000159120	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b.e #8	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000161082.g #26	ENSGT00390000000614 #27	ENSGT00940000161321 #28	ENSGT00940000154922.b #29	ENSGT00940000160981 #31	ENSGT00390000001216 #32	ENSGT00940000153954.g #33	ENSGT00400000022158 #34	ENSGT00940000157908 #35	ENSGT00940000161323 #36	ENSGT00940000153244.A #37	ENSGT00940000153954.h #33
koala	MODERN SPECIES	301								VEGFA (ENSPCIG00000004426) #14	MRPS18A (ENSPCIG00000024858) #15	RSPH9 (ENSPCIG00000024854) #16	MAD2L1BP (ENSPCIG00000028516) #17	GTPBP2 (ENSPCIG00000028513) #18	POLH (ENSPCIG00000028510) #19	XPO5 (ENSPCIG00000028142) #20	POLR1C (ENSPCIG00000028137) #21	YIPF3 (ENSPCIG00000028134) #22	LRRC73 (ENSPCIG00000028132) #23	ENSPCIG00000028130	DLK2 (ENSPCIG00000028126) #25	ENSPCIG00000031242 #26	ENSPCIG00000028124 #26	ZNF318 (ENSPCIG00000028122) #27	CRIP3 (ENSPCIG00000028120) #28	SLC22A7 (ENSPCIG00000028118) #29	ENSPCIG00000030687 #32	TTBK1 (ENSPCIG00000028115) #31	ENSPCIG00000027657 #33	SRF (ENSPCIG00000034256) #34	PTK7 (ENSPCIG00000028200) #35	KLC4 (ENSPCIG00000028199) #36	MRPL2 (ENSPCIG00000028198) #37
Common wonbat	MODERN SPECIES	1061	TCTE1 (ENSVURG00010004721)	TMEM151B (ENSVURG00010004729)	NFKBIE (ENSVURG00010004736)	SLC35B2 (ENSVURG00010004750)	ENSVURG00010004773 ##7	SLC29A1 (ENSVURG00010004838) #8	TMEM63B (ENSVURG00010004884) #11	MRPL14 (ENSVURG00010004920) #12	VEGFA (ENSVURG00010004952) #14	RSPH9 (ENSVURG00010005039) #16	MAD2L1BP (ENSVURG00010005048) #17	GTPBP2 (ENSVURG00010005065) #18	POLH (ENSVURG00010005103) #19	XPO5 (ENSVURG00010005144) #20	POLR1C (ENSVURG00010005191) #21	YIPF3 (ENSVURG00010005213) #22	LRRC73 (ENSVURG00010005229) #23	ENSVURG00010005241	DLK2 (ENSVURG00010005262) #25	ABCC10 (ENSVURG00010005277) #26	ZNF318 (ENSVURG00010005303) #27	CRIP3 (ENSVURG00010005334) #28	SLC22A7 (ENSVURG00010005350) #29	ENSVURG00010005373 #31	DNPH1 (ENSVURG00010005393) #32	ENSVURG00010005541 #33	SRF (ENSVURG00010005986) #34	PTK7 (ENSVURG00010006011) #35	KLC4 (ENSVURG00010006197) #36	MRPL2 (ENSVURG00010006236) #37	ENSVURG00010006264 #33
Wallaby	MODERN SPECIES	4385														XPO5 (ENSMEUG00000006794) #20	POLR1C (ENSMEUG00000006778) #21	YIPF3 (ENSMEUG00000006760) #22
Tasmanian devil	MODERN SPECIES	3	NFKBIE (ENSSHAG00000021391)	TMEM151B (ENSSHAG00000024559)	SLC35B2 (ENSSHAG00000023658)	ENSSHAG00000017428 ##7	SLC29A1 (ENSSHAG00000017372) #8	TMEM63B (ENSSHAG00000017114) #11	MRPL14 (ENSSHAG00000001453) #12	ENSSHAG00000015515 #14	MRPS18A (ENSSHAG00000030116) #15	RSPH9 (ENSSHAG00000014967) #16	MAD2L1BP (ENSSHAG00000030158) #17	GTPBP2 (ENSSHAG00000024911) #18	POLH (ENSSHAG00000014751) #19	XPO5 (ENSSHAG00000014472) #20	POLR1C (ENSSHAG00000014456) #21	YIPF3 (ENSSHAG00000014415) #22	LRRC73 (ENSSHAG00000023876) #23	ENSSHAG00000020933	DLK2 (ENSSHAG00000014178) #25	ABCC10 (ENSSHAG00000014014) #26	ZNF318 (ENSSHAG00000013823) #27	CRIP3 (ENSSHAG00000013569) #28	SLC22A7 (ENSSHAG00000013527) #29	TTBK1 (ENSSHAG00000013135) #31	DNPH1 (ENSSHAG00000029523) #32	ENSSHAG00000012816 #33	SRF (ENSSHAG00000031032) #34	PTK7 (ENSSHAG00000012466) #35	MRPL2 (ENSSHAG00000012091) #37	KLC4 (ENSSHAG00000012140) #36	ENSSHAG00000027243 #33
Opossum	MODERN SPECIES	1	SLC35B2 (ENSMODG00000018930)	ENSMODG00000018933 ##7	ENSMODG00000018935 #8	TMEM63B (ENSMODG00000018941) #11	MRPL14 (ENSMODG00000018945) #12	ENSMODG00000025685	VEGFA (ENSMODG00000018950) #14	MRPS18A (ENSMODG00000018952) #15	ENSMODG00000038008	RSPH9 (ENSMODG00000018954) #16	MAD2L1BP (ENSMODG00000018956) #17	GTPBP2 (ENSMODG00000018959) #18	POLH (ENSMODG00000018961) #19	XPO5 (ENSMODG00000018963) #20	POLR1C (ENSMODG00000018964) #21	YIPF3 (ENSMODG00000018967) #22	LRRC73 (ENSMODG00000018969) #23	TJAP1 (ENSMODG00000038004)	DLK2 (ENSMODG00000018972) #25	ABCC10 (ENSMODG00000018973) #26	ZNF318 (ENSMODG00000018974) #27	CRIP3 (ENSMODG00000018977) #28	SLC22A7 (ENSMODG00000018975) #29	ENSMODG00000018978 #31	DNPH1 (ENSMODG00000018979) #32	ENSMODG00000018980 #33	SRF (ENSMODG00000018981) #34	PTK7 (ENSMODG00000018983) #35	KLC4 (ENSMODG00000018988) #36	MRPL2 (ENSMODG00000018989) #37	ENSMODG00000018990 #33
Platypus	MODERN SPECIES	10	NFKBIE (ENSOANG00000048935)	SLC35B2 (ENSOANG00000047499)	ENSOANG00000048138 ##7	SLC29A1 (ENSOANG00000007211) #8	CAPN11 (ENSOANG00000009824) #10	TMEM63B (ENSOANG00000049821) #11	MRPL14 (ENSOANG00000012556) #12	ENSOANG00000044033 #14	MRPS18A (ENSOANG00000043266) #15	RSPH9 (ENSOANG00000001956) #16	MAD2L1BP (ENSOANG00000001957) #17	GTPBP2 (ENSOANG00000037369) #18	POLH (ENSOANG00000041331) #19	XPO5 (ENSOANG00000012106) #20	POLR1C (ENSOANG00000003043) #21	YIPF3 (ENSOANG00000045097) #22	LRRC73 (ENSOANG00000043842) #23	ENSOANG00000051088	DLK2 (ENSOANG00000044569) #25	ABCC10 (ENSOANG00000003601) #26	ENSOANG00000005203 #27	CRIP3 (ENSOANG00000007234) #28	SLC22A7 (ENSOANG00000007235) #29	TTBK1 (ENSOANG00000014492) #31	ENSOANG00000002285 #33	SRF (ENSOANG00000046298) #34	PTK7 (ENSOANG00000008446) #35	KLC4 (ENSOANG00000008447) #36	MRPL2 (ENSOANG00000008451) #37	ENSOANG00000008452 #33	ENSOANG00000050999
Sauria	ANCESTRAL SPECIES	1	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a
Archelosauria	ANCESTRAL SPECIES	1	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a
Archosauria	ANCESTRAL SPECIES	3	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a
Aves	ANCESTRAL SPECIES	12	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a
Neognathae	ANCESTRAL SPECIES	2	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Kakapo	MODERN SPECIES	2	SLC35B2 (ENSSHBG00005014749)	HSP90AB1 (ENSSHBG00005014736) ##7	SLC29A1 (ENSSHBG00005014731) #8	CAPN11 (ENSSHBG00005014708) #10	TMEM63B (ENSSHBG00005014680) #11	MRPL14 (ENSSHBG00005014668) #12	VEGFA (ENSSHBG00005014659) #14	MRPS18A (ENSSHBG00005014654) #15	RSPH9 (ENSSHBG00005014647) #16	ENSSHBG00005014638	MAD2L1BP (ENSSHBG00005014623) #17	GTPBP2 (ENSSHBG00005014597) #18	POLH (ENSSHBG00005014580) #19	XPO5 (ENSSHBG00005014565) #20	POLR1C (ENSSHBG00005014540) #21	YIPF3 (ENSSHBG00005014530) #22	LRRC73 (ENSSHBG00005014520) #23	ENSSHBG00005014511	DLK2 (ENSSHBG00005014499) #25	ENSSHBG00005014480	ZNF318 (ENSSHBG00005014455) #27	FAM98A (ENSSHBG00005014442)	RASGRP3 (ENSSHBG00005014292)	LTBP1 (ENSSHBG00005008823)	TTC27 (ENSSHBG00005008683)	BIRC6 (ENSSHBG00005008645)	YIPF4 (ENSSHBG00005008611)	CDC42EP3 (ENSSHBG00005008604)	ENSSHBG00005008600	CYP1B1 (ENSSHBG00005008591)	NANP (ENSSHBG00005008587)
Golden eagle	MODERN SPECIES	4	NFKBIE (ENSACCG00020011172)	SLC35B2 (ENSACCG00020011178)	HSP90AB1 (ENSACCG00020011199) ##7	CAPN11 (ENSACCG00020011220) #10	TMEM63B (ENSACCG00020011246) #11	MRPL14 (ENSACCG00020011271) #12	VEGFA (ENSACCG00020005257) #14	MRPS18A (ENSACCG00020005293) #15	RSPH9 (ENSACCG00020005305) #16	ENSACCG00020005317	MAD2L1BP (ENSACCG00020005329) #17	GTPBP2 (ENSACCG00020005334) #18	POLH (ENSACCG00020005375) #19	XPO5 (ENSACCG00020005466) #20	POLR1C (ENSACCG00020005565) #21	YIPF3 (ENSACCG00020005591) #22	LRRC73 (ENSACCG00020005615) #23	ENSACCG00020005643	DLK2 (ENSACCG00020005660) #25	ENSACCG00020005692	ZNF318 (ENSACCG00020005716) #27	FAM98A (ENSACCG00020005757)	RASGRP3 (ENSACCG00020005971)	LTBP1 (ENSACCG00020006465)	TTC27 (ENSACCG00020006876)	BIRC6 (ENSACCG00020007337)	YIPF4 (ENSACCG00020007785)	NLRC4 (ENSACCG00020007809)	CDC42EP3 (ENSACCG00020007817)	RMDN2 (ENSACCG00020007831)	CYP1B1 (ENSACCG00020007875)
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Great tit	MODERN SPECIES	22	TBXT (ENSPMJG00000001409)	PDE10A (ENSPMJG00000001349)	QKI (ENSPMJG00000001265)	PACRG (ENSPMJG00000001232)	PRKN (ENSPMJG00000001036)	AGPAT4 (ENSPMJG00000000867)	MAP3K4 (ENSPMJG00000000617)	ENSPMJG00000000606	ENSPMJG00000000596	ENSPMJG00000000582	MAD2L1BP (ENSPMJG00000000572) #17	GTPBP2 (ENSPMJG00000000553) #18	POLH (ENSPMJG00000000538) #19	XPO5 (ENSPMJG00000000397) #20	POLR1C (ENSPMJG00000000376) #21	YIPF3 (ENSPMJG00000000350) #22	LRRC73 (ENSPMJG00000000341) #23	ENSPMJG00000000325	DLK2 (ENSPMJG00000000211) #25	ENSPMJG00000000117	ZNF318 (ENSPMJG00000000093) #27	FAM98A (ENSPMJG00000000067)	RASGRP3 (ENSPMJG00000015611)	LTBP1 (ENSPMJG00000015609)	TTC27 (ENSPMJG00000015606)	BIRC6 (ENSPMJG00000015182)	YIPF4 (ENSPMJG00000015181)	CDC42EP3 (ENSPMJG00000015180)	RMDN2 (ENSPMJG00000015178)	CYP1B1 (ENSPMJG00000015177)	NANP (ENSPMJG00000015175)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Flycatcher	MODERN SPECIES	21	MPC1 (ENSFALG00000029027)	SFT2D1 (ENSFALG00000012238)	TBXT (ENSFALG00000012218)	PDE10A (ENSFALG00000012196)	QKI (ENSFALG00000012183)	PACRG (ENSFALG00000028276)	PRKN (ENSFALG00000012173)	AGPAT4 (ENSFALG00000012170)	MAP3K4 (ENSFALG00000012168)	ENSFALG00000012162	MAD2L1BP (ENSFALG00000012156) #17	GTPBP2 (ENSFALG00000012153) #18	POLH (ENSFALG00000012144) #19	XPO5 (ENSFALG00000012130) #20	POLR1C (ENSFALG00000012111) #21	YIPF3 (ENSFALG00000012092) #22	LRRC73 (ENSFALG00000012083) #23	ENSFALG00000012158	ENSFALG00000012070	DLK2 (ENSFALG00000028588) #25	ENSFALG00000012056	ZNF318 (ENSFALG00000012050) #27	FAM98A (ENSFALG00000012034)	RASGRP3 (ENSFALG00000012022)	LTBP1 (ENSFALG00000012012)	TTC27 (ENSFALG00000011986)	BIRC6 (ENSFALG00000011954)	YIPF4 (ENSFALG00000024112)	CDC42EP3 (ENSFALG00000015279)	ENSFALG00000011921	CYP1B1 (ENSFALG00000027315)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Medium ground finch	MODERN SPECIES	2	MPC1 (ENSGFOG00000001931)	SFT2D1 (ENSGFOG00000001923)	TBXT (ENSGFOG00000001906)	PDE10A (ENSGFOG00000001765)	QKI (ENSGFOG00000001715)	PACRG (ENSGFOG00000001701)	PRKN (ENSGFOG00000001685)	AGPAT4 (ENSGFOG00000001673)	MAP3K4 (ENSGFOG00000001636)	ENSGFOG00000001616	ENSGFOG00000001595	GTPBP2 (ENSGFOG00000001562) #18	POLH (ENSGFOG00000001545) #19	XPO5 (ENSGFOG00000001501) #20	POLR1C (ENSGFOG00000001471) #21	YIPF3 (ENSGFOG00000001426) #22	LRRC73 (ENSGFOG00000001411) #23	ENSGFOG00000001396	DLK2 (ENSGFOG00000001388) #25	ENSGFOG00000001376	ZNF318 (ENSGFOG00000001362) #27	FAM98A (ENSGFOG00000001348)	RASGRP3 (ENSGFOG00000001339)	LTBP1 (ENSGFOG00000001307)	TTC27 (ENSGFOG00000001282)	BIRC6 (ENSGFOG00000001003)	YIPF4 (ENSGFOG00000000969)	RMDN2 (ENSGFOG00000000949)	CYP1B1 (ENSGFOG00000000943)	EIF2AK2 (ENSGFOG00000000927)	GPATCH11 (ENSGFOG00000000909)
Passeroidea	ANCESTRAL SPECIES		ENSGT00390000018525.a.a	ENSGT00940000157912	ENSGT00940000156543	ENSGT00940000155310.b	ENSGT00940000157330	ENSGT00390000011034	ENSGT00950000182836.b.b.b.b	ENSGT00880000138034	ENSGT00940000155208.u.b.b	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Zebra finch	MODERN SPECIES	23	HNRNPU (ENSTGUG00000008309)	EFCAB2 (ENSTGUG00000019448)	KIF26B (ENSTGUG00000008377)	ENSTGUG00000029207	ENSTGUG00000021382	TFB2M (ENSTGUG00000008396)	CNST (ENSTGUG00000008403)	ENSTGUG00000009271	ENSTGUG00000009240	ENSTGUG00000009224	MAD2L1BP (ENSTGUG00000025478) #17	GTPBP2 (ENSTGUG00000009198) #18	POLH (ENSTGUG00000009195) #19	XPO5 (ENSTGUG00000009168) #20	POLR1C (ENSTGUG00000009159) #21	YIPF3 (ENSTGUG00000009133) #22	LRRC73 (ENSTGUG00000009122) #23	ENSTGUG00000026328	DLK2 (ENSTGUG00000021435) #25	ENSTGUG00000009082	ZNF318 (ENSTGUG00000009066) #27	FAM98A (ENSTGUG00000009042)	RASGRP3 (ENSTGUG00000009015)	LTBP1 (ENSTGUG00000008923)	TTC27 (ENSTGUG00000008893)	BIRC6 (ENSTGUG00000008833)	YIPF4 (ENSTGUG00000008824)	CDC42EP3 (ENSTGUG00000008820)	RMDN2 (ENSTGUG00000008805)	CYP1B1 (ENSTGUG00000029201)	NANP (ENSTGUG00000008794)
Common canary	MODERN SPECIES	1	RNASET2 (ENSSCAG00000010909)	RPS6KA2 (ENSSCAG00000010979)	MPC1 (ENSSCAG00000011139)	SFT2D1 (ENSSCAG00000011142)	TBXT (ENSSCAG00000011145)	PRKN (ENSSCAG00000011159)	AGPAT4 (ENSSCAG00000011164)	MAP3K4 (ENSSCAG00000011173)	ENSSCAG00000011197	ENSSCAG00000011226	MAD2L1BP (ENSSCAG00000011236) #17	GTPBP2 (ENSSCAG00000011243) #18	POLH (ENSSCAG00000011258) #19	XPO5 (ENSSCAG00000011278) #20	POLR1C (ENSSCAG00000011320) #21	YIPF3 (ENSSCAG00000011383) #22	LRRC73 (ENSSCAG00000011465) #23	ENSSCAG00000011471	DLK2 (ENSSCAG00000011474) #25	ENSSCAG00000011480	ZNF318 (ENSSCAG00000011502) #27	FAM98A (ENSSCAG00000011521)	RASGRP3 (ENSSCAG00000011543)	LTBP1 (ENSSCAG00000011687)	TTC27 (ENSSCAG00000011710)	BIRC6 (ENSSCAG00000011748)	YIPF4 (ENSSCAG00000011797)	CDC42EP3 (ENSSCAG00000011801)	RMDN2 (ENSSCAG00000011811)	CYP1B1 (ENSSCAG00000011814)	NANP (ENSSCAG00000011820)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Anatidae	ANCESTRAL SPECIES	11	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000175262	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Pink-footed goose	MODERN SPECIES	64	HSP90AB1 (ENSABRG00000019643) ##7	SLC29A1 (ENSABRG00000019642) #8	SLC35B2 (ENSABRG00000019639)	CAPN11 (ENSABRG00000019619) #10	TMEM63B (ENSABRG00000019612) #11	MRPL14 (ENSABRG00000019610) #12	VEGFA (ENSABRG00000019601) #14	MRPS18A (ENSABRG00000019591) #15	RSPH9 (ENSABRG00000019585) #16	ENSABRG00000019574	MAD2L1BP (ENSABRG00000019569) #17	GTPBP2 (ENSABRG00000019486) #18	POLH (ENSABRG00000019452) #19	XPO5 (ENSABRG00000019302) #20	POLR1C (ENSABRG00000019257) #21	YIPF3 (ENSABRG00000019216) #22	LRRC73 (ENSABRG00000019200) #23	ENSABRG00000019032	DLK2 (ENSABRG00000019020) #25	ENSABRG00000018966	ZNF318 (ENSABRG00000018946) #27	FAM98A (ENSABRG00000018938)	RASGRP3 (ENSABRG00000018738)	LTBP1 (ENSABRG00000018707)	TTC27 (ENSABRG00000018604)	YIPF4 (ENSABRG00000018191)	CDC42EP3 (ENSABRG00000018188)	RMDN2 (ENSABRG00000018186)	CYP1B1 (ENSABRG00000018162)	NANP (ENSABRG00000018160)	EIF2AK2 (ENSABRG00000018144)
Duck	MODERN SPECIES	21	NFKBIE (ENSAPLG00000015410)	SLC35B2 (ENSAPLG00000015415)	ENSAPLG00000024554	TMEM63B (ENSAPLG00000016007) #11	MRPL14 (ENSAPLG00000016246) #12	VEGFA (ENSAPLG00000025704) #14	RSPH9 (ENSAPLG00000016326) #16	MRPS18A (ENSAPLG00000016280) #15	ENSAPLG00000016336	MAD2L1BP (ENSAPLG00000016405) #17	ENSAPLG00000017749 #18	ENSAPLG00000024510	POLH (ENSAPLG00000001092) #19	XPO5 (ENSAPLG00000001469) #20	POLR1C (ENSAPLG00000002908) #21	YIPF3 (ENSAPLG00000003089) #22	ZNF318 (ENSAPLG00000004126) #27	ENSAPLG00000003561	FAM98A (ENSAPLG00000012120)	RASGRP3 (ENSAPLG00000012309)	LTBP1 (ENSAPLG00000012621)	ENSAPLG00000018058	TTC27 (ENSAPLG00000013557)	BIRC6 (ENSAPLG00000014195)	YIPF4 (ENSAPLG00000007556)	CDC42EP3 (ENSAPLG00000011470)	ENSAPLG00000015804	CYP1B1 (ENSAPLG00000001407)	NANP (ENSAPLG00000015758)	EIF2AK2 (ENSAPLG00000030443)	GPATCH11 (ENSAPLG00000009863)
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084.a #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Japanese quail	MODERN SPECIES	21	SLC35B2 (ENSCJPG00005010304)	HSP90AB1 (ENSCJPG00005010305) ##7	SLC29A1 (ENSCJPG00005010306) #8	CAPN11 (ENSCJPG00005010310) #10	TMEM63B (ENSCJPG00005010350) #11	MRPL14 (ENSCJPG00005011305) #12	VEGFA (ENSCJPG00005011306) #14	MRPS18A (ENSCJPG00005011323) #15	RSPH9 (ENSCJPG00005011325) #16	ENSCJPG00005011327	MAD2L1BP (ENSCJPG00005011328) #17	GTPBP2 (ENSCJPG00005011329) #18	POLH (ENSCJPG00005011345) #19	XPO5 (ENSCJPG00005011348) #20	POLR1C (ENSCJPG00005011351) #21	YIPF3 (ENSCJPG00005011353) #22	LRRC73 (ENSCJPG00005011357) #23	ENSCJPG00005011358	DLK2 (ENSCJPG00005011361) #25	ENSCJPG00005011364	ZNF318 (ENSCJPG00005011371) #27	FAM98A (ENSCJPG00005011373)	RASGRP3 (ENSCJPG00005011374)	LTBP1 (ENSCJPG00005011381)	TTC27 (ENSCJPG00005011386)	BIRC6 (ENSCJPG00005011541)	YIPF4 (ENSCJPG00005012134)	ENSCJPG00005012135	CDC42EP3 (ENSCJPG00005012136)	RMDN2 (ENSCJPG00005012138)	CYP1B1 (ENSCJPG00005012140)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000170208	ENSGT00940000158672 #10	ENSGT00940000157084.a #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Chicken	MODERN SPECIES	22	HSP90AB1 (ENSGALG00010019591) ##7	SLC29A1 (ENSGALG00010019602) #8	ENSGALG00010019621	CAPN11 (ENSGALG00010019641) #10	TMEM63B (ENSGALG00010019649) #11	MRPL14 (ENSGALG00010019659) #12	VEGFA (ENSGALG00010019716) #14	MRPS18A (ENSGALG00010019761) #15	RSPH9 (ENSGALG00010019794) #16	EPHX1L (ENSGALG00010019813)	MAD2L1BP (ENSGALG00010019832) #17	GTPBP2 (ENSGALG00010006983) #18	POLH (ENSGALG00010006998) #19	XPO5 (ENSGALG00010009623) #20	POLR1C (ENSGALG00010009699) #21	YIPF3 (ENSGALG00010009719) #22	LRRC73 (ENSGALG00010009740) #23	ENSGALG00010009778	DLK2 (ENSGALG00010007626) #25	ENSGALG00010007633	ZNF318 (ENSGALG00010007642) #27	FAM98A (ENSGALG00010007660)	RASGRP3 (ENSGALG00010007695)	LTBP1 (ENSGALG00010007719)	TTC27 (ENSGALG00010007588)	BIRC6 (ENSGALG00010007614)	YIPF4 (ENSGALG00010009798)	CDC42EP3 (ENSGALG00010010080)	RMDN2 (ENSGALG00010007318)	CYP1B1 (ENSGALG00010007388)	NANP (ENSGALG00010007391)
Turkey	MODERN SPECIES	11	ENSMGAG00000011172	ENSMGAG00000011167	ENSMGAG00000015830	ENSMGAG00000011163	ENSMGAG00000011117	ENSMGAG00000018176	ENSMGAG00000011074	ENSMGAG00000011063	ENSMGAG00000010985	ENSMGAG00000022571	ENSMGAG00000011056 #27	ENSMGAG00000011037 #25	ENSMGAG00000011043	LRRC73 (ENSMGAG00000011029) #23	ENSMGAG00000021748	ENSMGAG00000011023 #22	XPO5 (ENSMGAG00000010938) #20	ENSMGAG00000011020 #21	ENSMGAG00000010916 #18	ENSMGAG00000010927 #19	ENSMGAG00000010904	MAD2L1BP (ENSMGAG00000010914) #17	ENSMGAG00000010915 #15	ENSMGAG00000015828 #16	VEGFA (ENSMGAG00000010893) #14	ENSMGAG00000010889 #12	ENSMGAG00000010869 #11	ENSMGAG00000021459 #11	ENSMGAG00000010826 #10	SLC35B2 (ENSMGAG00000010805)	ENSMGAG00000010808 ##7
African ostrich	MODERN SPECIES	1025	NFKBIE (ENSSCUG00000016047)	SLC35B2 (ENSSCUG00000016046)	HSP90AB1 (ENSSCUG00000016042) ##7	SLC29A1 (ENSSCUG00000016037) #8	CAPN11 (ENSSCUG00000016021) #10	TMEM63B (ENSSCUG00000016008) #11	MRPL14 (ENSSCUG00000016000) #12	VEGFA (ENSSCUG00000015978) #14	MRPS18A (ENSSCUG00000015974) #15	RSPH9 (ENSSCUG00000015972) #16	ENSSCUG00000015969	GTPBP2 (ENSSCUG00000015963) #18	POLH (ENSSCUG00000015946) #19	XPO5 (ENSSCUG00000015928) #20	POLR1C (ENSSCUG00000015922) #21	YIPF3 (ENSSCUG00000015920) #22	LRRC73 (ENSSCUG00000015918) #23	ENSSCUG00000015916	DLK2 (ENSSCUG00000015914) #25	ENSSCUG00000015910	ZNF318 (ENSSCUG00000015909) #27	FAM98A (ENSSCUG00000015907)	RASGRP3 (ENSSCUG00000015905)	LTBP1 (ENSSCUG00000015855)	TTC27 (ENSSCUG00000015808)	BIRC6 (ENSSCUG00000015733)	YIPF4 (ENSSCUG00000015690)	CDC42EP3 (ENSSCUG00000015688)	RMDN2 (ENSSCUG00000015681)	ENSSCUG00000015677	NANP (ENSSCUG00000015675)
Australian saltwater crocodile	MODERN SPECIES	60	SLC35B2 (ENSCPRG00005010751)	ENSCPRG00005010794 ##7	SLC29A1 (ENSCPRG00005010797) #8	CAPN11 (ENSCPRG00005010843) #10	TMEM63B (ENSCPRG00005011287) #11	MRPL14 (ENSCPRG00005011733) #12	VEGFA (ENSCPRG00005011788) #14	MRPS18A (ENSCPRG00005011796) #15	RSPH9 (ENSCPRG00005011824) #16	ENSCPRG00005011829	MAD2L1BP (ENSCPRG00005011837) #17	GTPBP2 (ENSCPRG00005011854) #18	POLH (ENSCPRG00005011913) #19	XPO5 (ENSCPRG00005012025) #20	POLR1C (ENSCPRG00005012578) #21	YIPF3 (ENSCPRG00005012654) #22	LRRC73 (ENSCPRG00005012658) #23	ENSCPRG00005012660	DLK2 (ENSCPRG00005012664) #25	ENSCPRG00005012699	ZNF318 (ENSCPRG00005012721) #27	FAM98A (ENSCPRG00005012727)	RASGRP3 (ENSCPRG00005012741)	LTBP1 (ENSCPRG00005012908)	TTC27 (ENSCPRG00005013242)	BIRC6 (ENSCPRG00005013299)	YIPF4 (ENSCPRG00005013351)	NLRC4 (ENSCPRG00005013358)	CDC42EP3 (ENSCPRG00005013362)	RMDN2 (ENSCPRG00005013368)	ENSCPRG00005013369
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Emydidae	ANCESTRAL SPECIES		ENSGT00950000182898.a.a.a.a.b #8	ENSGT00950000182841.b.b.a.d	ENSGT00940000170208	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a	ENSGT00390000003094
Three-toed box turtle	MODERN SPECIES	31	ENSTMTG00000002413 ##7	SLC29A1 (ENSTMTG00000002421) #8	ENSTMTG00000002425	CAPN11 (ENSTMTG00000002428) #10	TMEM63B (ENSTMTG00000002440) #11	MRPL14 (ENSTMTG00000002471) #12	VEGFA (ENSTMTG00000002476) #14	MRPS18A (ENSTMTG00000002483) #15	RSPH9 (ENSTMTG00000002489) #16	ENSTMTG00000002495	MAD2L1BP (ENSTMTG00000002503) #17	GTPBP2 (ENSTMTG00000002512) #18	POLH (ENSTMTG00000002520) #19	XPO5 (ENSTMTG00000002578) #20	POLR1C (ENSTMTG00000002745) #21	YIPF3 (ENSTMTG00000002751) #22	LRRC73 (ENSTMTG00000002759) #23	ENSTMTG00000002763	DLK2 (ENSTMTG00000002768) #25	ENSTMTG00000002783	ZNF318 (ENSTMTG00000002828) #27	FAM98A (ENSTMTG00000002840)	RASGRP3 (ENSTMTG00000002848)	LTBP1 (ENSTMTG00000002913)	TTC27 (ENSTMTG00000003241)	BIRC6 (ENSTMTG00000004123)	YIPF4 (ENSTMTG00000004722)	CDC42EP3 (ENSTMTG00000004738)	RMDN2 (ENSTMTG00000004753)	CYP1B1 (ENSTMTG00000004779)	NANP (ENSTMTG00000004793)
painted turtle	MODERN SPECIES	12	SLC29A1 (ENSCPBG00000025308) #8	ENSCPBG00000025302	ENSCPBG00000025291	CAPN11 (ENSCPBG00000025283) #10	TMEM63B (ENSCPBG00000025267) #11	MRPL14 (ENSCPBG00000025263) #12	VEGFA (ENSCPBG00000025256) #14	MRPS18A (ENSCPBG00000025243) #15	RSPH9 (ENSCPBG00000025233) #16	ENSCPBG00000025231	MAD2L1BP (ENSCPBG00000025229) #17	GTPBP2 (ENSCPBG00000025223) #18	POLH (ENSCPBG00000025219) #19	XPO5 (ENSCPBG00000025210) #20	POLR1C (ENSCPBG00000025203) #21	YIPF3 (ENSCPBG00000025201) #22	LRRC73 (ENSCPBG00000025198) #23	ENSCPBG00000025194	DLK2 (ENSCPBG00000025191) #25	ENSCPBG00000025164	ZNF318 (ENSCPBG00000025150) #27	FAM98A (ENSCPBG00000025148)	RASGRP3 (ENSCPBG00000025146)	LTBP1 (ENSCPBG00000025144)	TTC27 (ENSCPBG00000025140)	ENSCPBG00000025139	BIRC6 (ENSCPBG00000024856)	YIPF4 (ENSCPBG00000024825)	CDC42EP3 (ENSCPBG00000024824)	CYP1B1 (ENSCPBG00000024820)	RMDN2 (ENSCPBG00000024816)
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000157927	ENSGT01020000230401.a.a.a.i.b ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00900000143268	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Abingdon island giant tortoise	MODERN SPECIES	2764			SLC29A1 (ENSCABG00000020740) #8	CAPN11 (ENSCABG00000020734) #10	TMEM63B (ENSCABG00000020007) #11	MRPL14 (ENSCABG00000019872) #12	VEGFA (ENSCABG00000019852) #14	MRPS18A (ENSCABG00000019843) #15	RSPH9 (ENSCABG00000019828) #16	ENSCABG00000019821	MAD2L1BP (ENSCABG00000019817) #17	GTPBP2 (ENSCABG00000019815) #18	POLH (ENSCABG00000019813) #19	XPO5 (ENSCABG00000019702) #20	POLR1C (ENSCABG00000019684) #21	YIPF3 (ENSCABG00000019683) #22	LRRC73 (ENSCABG00000019682) #23	ENSCABG00000019681	DLK2 (ENSCABG00000019679) #25	ENSCABG00000019675	ZNF318 (ENSCABG00000019668) #27	FAM98A (ENSCABG00000019663)	RASGRP3 (ENSCABG00000019657)	LTBP1 (ENSCABG00000019638)
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005014173	SLC29A1 (ENSGEVG00005014138) #8	CAPN11 (ENSGEVG00005014087) #10	TMEM63B (ENSGEVG00005013984) #11	MRPL14 (ENSGEVG00005013942) #12	VEGFA (ENSGEVG00005013826) #14	MRPS18A (ENSGEVG00005013782) #15	RSPH9 (ENSGEVG00005013714) #16	ENSGEVG00005013690	MAD2L1BP (ENSGEVG00005013653) #17	GTPBP2 (ENSGEVG00005013624) #18	ENSGEVG00005013611	POLH (ENSGEVG00005013584) #19	XPO5 (ENSGEVG00005013480) #20	POLR1C (ENSGEVG00005013418) #21	YIPF3 (ENSGEVG00005013390) #22	LRRC73 (ENSGEVG00005013269) #23	ENSGEVG00005013249	DLK2 (ENSGEVG00005013197) #25	ENSGEVG00005013109	ZNF318 (ENSGEVG00005013069) #27	FAM98A (ENSGEVG00005013042)	RASGRP3 (ENSGEVG00005012657)	LTBP1 (ENSGEVG00005012158)	ENSGEVG00005012095	TTC27 (ENSGEVG00005012007)	ENSGEVG00005011935	BIRC6 (ENSGEVG00005011790)	YIPF4 (ENSGEVG00005011729)	CDC42EP3 (ENSGEVG00005011713)	RMDN2 (ENSGEVG00005011625)
Chinese turtle	MODERN SPECIES	1709								VEGFA (ENSPSIG00000013976) #14	MRPS18A (ENSPSIG00000013672) #15	RSPH9 (ENSPSIG00000013574) #16	ENSPSIG00000013450	MAD2L1BP (ENSPSIG00000001105) #17	GTPBP2 (ENSPSIG00000013133) #18	POLH (ENSPSIG00000012685) #19	POLR1C (ENSPSIG00000012580) #21	YIPF3 (ENSPSIG00000012202) #22	LRRC73 (ENSPSIG00000011436) #23	ENSPSIG00000011032	DLK2 (ENSPSIG00000010538) #25	ENSPSIG00000010250	ZNF318 (ENSPSIG00000010067) #27	FAM98A (ENSPSIG00000009481)	RASGRP3 (ENSPSIG00000008745)	ENSPSIG00000008697	ENSPSIG00000008656	LTBP1 (ENSPSIG00000006827)	ENSPSIG00000006799	TTC27 (ENSPSIG00000005713)	YIPF4 (ENSPSIG00000005704)	ENSPSIG00000005630	CDC42EP3 (ENSPSIG00000001100)
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Episquamata	ANCESTRAL SPECIES		ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00530000069620	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Laterata	ANCESTRAL SPECIES	4	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00530000069620	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000000614.f #27	ENSGT00940000164531	ENSGT00390000000614.e #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000004430	ENSPMRG00000004418	CAPN11 (ENSPMRG00000004384) #10	ENSPMRG00000004377	TMEM63B (ENSPMRG00000004366) #11	ENSPMRG00000004362 #12	VEGFA (ENSPMRG00000004356) #14	ENSPMRG00000004352 #15	RSPH9 (ENSPMRG00000004348) #16	ENSPMRG00000004197	MAD2L1BP (ENSPMRG00000004154) #17	GTPBP2 (ENSPMRG00000004068) #18	POLH (ENSPMRG00000004049) #19	XPO5 (ENSPMRG00000004033) #20	POLR1C (ENSPMRG00000004015) #21	YIPF3 (ENSPMRG00000004004) #22	LRRC73 (ENSPMRG00000003997) #23	ENSPMRG00000003986	ENSPMRG00000003980	DLK2 (ENSPMRG00000003972) #25	ENSPMRG00000003914	ZNF318 (ENSPMRG00000003898) #27	ENSPMRG00000003891	FAM98A (ENSPMRG00000003870)	RASGRP3 (ENSPMRG00000003815)	LTBP1 (ENSPMRG00000003069)	TTC27 (ENSPMRG00000002472)	BIRC6 (ENSPMRG00000001197)	YIPF4 (ENSPMRG00000000582)	ENSPMRG00000000569	CDC42EP3 (ENSPMRG00000000560)
Argentine black and white tegu	MODERN SPECIES	7	HSP90AB1 (ENSSMRG00000005790) ##7	SLC29A1 (ENSSMRG00000005838) #8	ENSSMRG00000005860	CAPN11 (ENSSMRG00000005886) #10	TMEM63B (ENSSMRG00000006007) #11	MRPL14 (ENSSMRG00000006019) #12	VEGFA (ENSSMRG00000006067) #14	MRPS18A (ENSSMRG00000006147) #15	RSPH9 (ENSSMRG00000006162) #16	ENSSMRG00000006171	MAD2L1BP (ENSSMRG00000006189) #17	GTPBP2 (ENSSMRG00000006217) #18	POLH (ENSSMRG00000006223) #19	XPO5 (ENSSMRG00000006247) #20	POLR1C (ENSSMRG00000006279) #21	YIPF3 (ENSSMRG00000006282) #22	LRRC73 (ENSSMRG00000006283) #23	ENSSMRG00000006289	DLK2 (ENSSMRG00000006290) #25	ENSSMRG00000006300 #27	ENSSMRG00000006305	ENSSMRG00000006331	ENSSMRG00000006337 #27	FAM98A (ENSSMRG00000006345)	RASGRP3 (ENSSMRG00000006366)	LTBP1 (ENSSMRG00000006384)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Elapidae	ANCESTRAL SPECIES		ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636.d #18	ENSGT00940000157048.k.b #19	ENSGT00940000155636.c #18	ENSGT00940000157048.k.a #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126.fb	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636.c #18	ENSGT00940000157048.k.a #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126.fb	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000157927	ENSGT01020000230401.a.a.a.j ##7	ENSGT00950000182898.a.a.a.a.b #8	ENSGT00940000158672 #10	ENSGT00940000157084 #11	ENSGT00390000001121 #12	ENSGT00940000157284 #14	ENSGT00390000006493 #15	ENSGT00390000018686 #16	ENSGT00390000002210.c.a	ENSGT00390000003812 #17	ENSGT00940000155636.c #18	ENSGT00940000157048.k.a #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126.fb	ENSGT00940000153168.B	ENSGT00940000161744	ENSGT00940000157736	ENSGT00950000182992.a.b.a.a	ENSGT00950000183037.B.a
Eastern brown snake	MODERN SPECIES	5	SLC35B2 (ENSPTXG00000005431)	HSP90AB1 (ENSPTXG00000005430) ##7	SLC29A1 (ENSPTXG00000005427) #8	CAPN11 (ENSPTXG00000005422) #10	TMEM63B (ENSPTXG00000005420) #11	MRPL14 (ENSPTXG00000005417) #12	VEGFA (ENSPTXG00000005415) #14	MRPS18A (ENSPTXG00000005412) #15	RSPH9 (ENSPTXG00000005411) #16	ENSPTXG00000005409	MAD2L1BP (ENSPTXG00000005407) #17	GTPBP2 (ENSPTXG00000005406) #18	POLH (ENSPTXG00000005404) #19	XPO5 (ENSPTXG00000005397) #20	POLR1C (ENSPTXG00000005394) #21	YIPF3 (ENSPTXG00000005392) #22	LRRC73 (ENSPTXG00000005391) #23	ENSPTXG00000005390	DLK2 (ENSPTXG00000005388) #25	ENSPTXG00000005386	ZNF318 (ENSPTXG00000005385) #27	FAM98A (ENSPTXG00000005382)	RASGRP3 (ENSPTXG00000005379)	LTBP1 (ENSPTXG00000001979)	TTC27 (ENSPTXG00000000699)	BIRC6 (ENSPTXG00000000600)	YIPF4 (ENSPTXG00000000565)	NLRC4 (ENSPTXG00000000561)	CDC42EP3 (ENSPTXG00000000557)	ENSPTXG00000000546	ENSPTXG00000000538
Mainland tiger snake	MODERN SPECIES	3	CAPN11 (ENSNSUG00000008888) #10	TMEM63B (ENSNSUG00000008569) #11	MRPL14 (ENSNSUG00000008568) #12	ENSNSUG00000008567	VEGFA (ENSNSUG00000008566) #14	MRPS18A (ENSNSUG00000008564) #15	RSPH9 (ENSNSUG00000008549) #16	ENSNSUG00000008548	MAD2L1BP (ENSNSUG00000008547) #17	ENSNSUG00000008546 #18	ENSNSUG00000008545 #18	POLH (ENSNSUG00000008544) #19	ENSNSUG00000008543 #20	ENSNSUG00000008542 #20	POLR1C (ENSNSUG00000008541) #21	YIPF3 (ENSNSUG00000008540) #22	LRRC73 (ENSNSUG00000008539) #23	ENSNSUG00000008538	DLK2 (ENSNSUG00000008537) #25	ENSNSUG00000008536	ENSNSUG00000008527	ZNF318 (ENSNSUG00000008526) #27	FAM98A (ENSNSUG00000008525)	RASGRP3 (ENSNSUG00000008524)	LTBP1 (ENSNSUG00000008523)	TTC27 (ENSNSUG00000008517)	BIRC6 (ENSNSUG00000008516)	YIPF4 (ENSNSUG00000008515)	NLRC4 (ENSNSUG00000008514)	CDC42EP3 (ENSNSUG00000008513)	RMDN2 (ENSNSUG00000008512)
Blue-lipped sea krait	MODERN SPECIES	976										EPHX1 (ENSLLTG00000006209)	MAD2L1BP (ENSLLTG00000006203) #17	GTPBP2 (ENSLLTG00000006200) #18	POLH (ENSLLTG00000006196) #19	XPO5 (ENSLLTG00000005867) #20	POLR1C (ENSLLTG00000005845) #21	YIPF3 (ENSLLTG00000005841) #22	LRRC73 (ENSLLTG00000005837) #23	ENSLLTG00000005829
Indian cobra	MODERN SPECIES		ENSNNAG00000017129 #10	ENSNNAG00000017150 #10	TMEM63B (ENSNNAG00000017206) #11	MRPL14 (ENSNNAG00000017235) #12	VEGFA (ENSNNAG00000017242) #14	MRPS18A (ENSNNAG00000017264) #15	ENSNNAG00000017283	RSPH9 (ENSNNAG00000017288) #16	EPHX1 (ENSNNAG00000017303)	MAD2L1BP (ENSNNAG00000017316) #17	GTPBP2 (ENSNNAG00000017326) #18	ENSNNAG00000017345 #19	ENSNNAG00000017353 #19	XPO5 (ENSNNAG00000017360) #20	POLR1C (ENSNNAG00000017390) #21	YIPF3 (ENSNNAG00000017400) #22	LRRC73 (ENSNNAG00000017406) #23	ENSNNAG00000017414	DLK2 (ENSNNAG00000017423) #25	ENSNNAG00000000011	ZNF318 (ENSNNAG00000000022) #27	FAM98A (ENSNNAG00000000025)	RASGRP3 (ENSNNAG00000000053)	LTBP1 (ENSNNAG00000000116)	TTC27 (ENSNNAG00000000141)	BIRC6 (ENSNNAG00000000146)	YIPF4 (ENSNNAG00000000171)	NLRC4 (ENSNNAG00000000176)	CDC42EP3 (ENSNNAG00000000180)	RMDN2 (ENSNNAG00000000183)	ENSNNAG00000000186
Lizard	MODERN SPECIES		ENSACAG00000045348	BTBD9 (ENSACAG00000014225)	ENSACAG00000036181	GLO1 (ENSACAG00000039197)	ENSACAG00000014346	ENSACAG00000036347	ENSACAG00000042936	ENSACAG00000035098	ENSACAG00000010116	MAD2L1BP (ENSACAG00000010099) #17	GTPBP2 (ENSACAG00000010036) #18	POLH (ENSACAG00000009980) #19	ENSACAG00000044058 #20	ENSACAG00000009808 #20	POLR1C (ENSACAG00000009764) #21	YIPF3 (ENSACAG00000009687) #22	LRRC73 (ENSACAG00000009661) #23	ENSACAG00000009630	DLK2 (ENSACAG00000038792) #25	ENSACAG00000009528	ZNF318 (ENSACAG00000009497) #27	FAM98A (ENSACAG00000009435)	RASGRP3 (ENSACAG00000009357)	LTBP1 (ENSACAG00000009007)	TTC27 (ENSACAG00000008869)	BIRC6 (ENSACAG00000008607)	ENSACAG00000043563	YIPF4 (ENSACAG00000008569)	NLRC4 (ENSACAG00000008534)	CDC42EP3 (ENSACAG00000008527)	ENSACAG00000008473
tuatara	MODERN SPECIES	1943		VEGFA (ENSSPUG00000011501) #14	MRPS18A (ENSSPUG00000011517) #15	RSPH9 (ENSSPUG00000011524) #16	ENSSPUG00000011599	MAD2L1BP (ENSSPUG00000011617) #17	GTPBP2 (ENSSPUG00000011642) #18	POLH (ENSSPUG00000011675) #19	ENSSPUG00000011728	ENSSPUG00000011735 #20	ENSSPUG00000011745 #20	ENSSPUG00000011754	ENSSPUG00000011759	ENSSPUG00000011779 #20	POLR1C (ENSSPUG00000011822) #21	YIPF3 (ENSSPUG00000011840) #22	LRRC73 (ENSSPUG00000011871) #23	ENSSPUG00000011894	DLK2 (ENSSPUG00000011908) #25	ENSSPUG00000012006 #27	ZNF318 (ENSSPUG00000012013) #27	FAM98A (ENSSPUG00000012028)	RASGRP3 (ENSSPUG00000012047)	LTBP1 (ENSSPUG00000012078)	TTC27 (ENSSPUG00000012153)	BIRC6 (ENSSPUG00000012210)	YIPF4 (ENSSPUG00000012304)
Anura	ANCESTRAL SPECIES	233									ENSGT00390000013762.b.a	ENSGT00940000159341	ENSGT00390000003812 #17	ENSGT00940000155636 #18	ENSGT00940000157048 #19	ENSGT00940000153408.A #20	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT00940000161321 #28
Frog	MODERN SPECIES	5	ENSXETG00000041556	ENSXETG00000042425	ENSXETG00000042133	slc29a1 (ENSXETG00000043518) #8	ENSXETG00000045823	tcte1 (ENSXETG00000010891)	MAD2L1BP (ENSXETG00000048874) #17	gtpbp2 (ENSXETG00000048908) #18	ENSXETG00000045079	polh (ENSXETG00000048334) #19	xpo5 (ENSXETG00000010883) #20	ENSXETG00000003957 #20	xpo5.2 (ENSXETG00000010884) #20	ENSXETG00000047945	polr1c (ENSXETG00000010882) #21	yipf3 (ENSXETG00000047304) #22	lrrc73 (ENSXETG00000042652) #23	tjap1 (ENSXETG00000045411)	ENSXETG00000046868	dlk2 (ENSXETG00000042444)	abcc10 (ENSXETG00000010586)	znf318 (ENSXETG00000039019) #27	ENSXETG00000046269	crip3 (ENSXETG00000045991) #28	rnf8 (ENSXETG00000010581)	XB22169453 [provisional] (ENSXETG00000045168)	naglu (ENSXETG00000031856)	cmtr1 (ENSXETG00000009964)	kcnk5 (ENSXETG00000045856)	SAYSD1 (ENSXETG00000046980)	glp1r (ENSXETG00000046829)
Actinopterygii	ANCESTRAL SPECIES	73	ENSGT00390000008848	ENSGT00940000165200	ENSGT00940000154902	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00940000167863	ENSGT00940000157865	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00390000001216 #32
Reedfish	MODERN SPECIES	6	ENSECRG00000017549	exo1 (ENSECRG00000017500)	yipf4 (ENSECRG00000017405)	COX6A1 (ENSECRG00000017354)	ENSECRG00000017334	BIRC6 (ENSECRG00000016833)	ENSECRG00000016583	LTBP1 (ENSECRG00000016077)	rasgrp3 (ENSECRG00000015885)	FAM98A (ENSECRG00000015851)	ENSECRG00000015791	nvl (ENSECRG00000015733)	degs1 (ENSECRG00000015517)	fbxo28 (ENSECRG00000015463)	polr1c (ENSECRG00000015427) #21	yipf3 (ENSECRG00000015119) #22	LRRC73 (ENSECRG00000015041) #23	ENSECRG00000014952	DLK2 (ENSECRG00000014915) #25	ENSECRG00000014840	ENSECRG00000014708 #27	ppp2r5d (ENSECRG00000014657)	mea1 (ENSECRG00000020885)	dnph1 (ENSECRG00000020864) #32	CUL7 (ENSECRG00000020812) #33	srfb (ENSECRG00000020770) #34	ptk7a (ENSECRG00000020679) #35	soul4 (ENSECRG00000020641)	ENSECRG00000020591	mrpl2 (ENSECRG00000020564) #37	ENSECRG00000020556
Neopterygii	ANCESTRAL SPECIES	81	ENSGT00390000008848	ENSGT00940000165200	ENSGT00940000154902	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000157865	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00940000164531	ENSGT00390000000614 #27	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00390000001216 #32
Spotted gar	MODERN SPECIES	654	ENSLOCG00000016635	ENSLOCG00000016636	ENSLOCG00000016638	exo1 (ENSLOCG00000016639)	yipf4 (ENSLOCG00000016640)	BIRC6 (ENSLOCG00000016644)	ttc27 (ENSLOCG00000016680)	LTBP1 (ENSLOCG00000016686)	rasgrp3 (ENSLOCG00000016689)	FAM98A (ENSLOCG00000016699)	ENSLOCG00000016701	nvl (ENSLOCG00000016706)	degs1 (ENSLOCG00000016708)	fbxo28 (ENSLOCG00000016709)	polr1c (ENSLOCG00000016710) #21	yipf3 (ENSLOCG00000016712) #22	LRRC73 (ENSLOCG00000016718) #23	ENSLOCG00000016719	DLK2 (ENSLOCG00000016721) #25	ENSLOCG00000016723	ENSLOCG00000016729	ENSLOCG00000016733 #27	ppp2r5d (ENSLOCG00000016734)	mea1 (ENSLOCG00000016738)	dnph1 (ENSLOCG00000016740) #32	CUL7 (ENSLOCG00000016743) #33	ninl (ENSLOCG00000016750)	gins1 (ENSLOCG00000016757)	abhd12 (ENSLOCG00000016763)	pygb (ENSLOCG00000016769)	ENSLOCG00000016781
Osteoglossocephalai	ANCESTRAL SPECIES	96	ENSGT00390000017746	ENSGT00940000165200	ENSGT00940000154902	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000156126	ENSGT00500000044929	ENSGT00940000155823.B	ENSGT00940000158843	ENSGT00440000037341.a	ENSGT00940000157865	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Clupeocephala	ANCESTRAL SPECIES	89	ENSGT00990000203619.A.b.b.b.a.e	ENSGT01030000234573.B.c.b.a	ENSGT00940000159658.a	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Otomorpha	ANCESTRAL SPECIES	32	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e.k	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000001094	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a
Clupeiformes	ANCESTRAL SPECIES	35	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e.k	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00940000172304.a.a	ENSGT00390000001094.`b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000167706
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000004418	mtg1 (ENSCHAG00000004441)	ENSCHAG00000004535	ENSCHAG00000004549	ENSCHAG00000004594	ENSCHAG00000004687	ENSCHAG00000004778	prph2b (ENSCHAG00000004787)	UBR2 (ENSCHAG00000004826)	ENSCHAG00000008532	prkn (ENSCHAG00000008587)	ENSCHAG00000008756	ENSCHAG00000008773	ENSCHAG00000008781	ncoa4 (ENSCHAG00000008809)	yipf3 (ENSCHAG00000008825) #22	LRRC73 (ENSCHAG00000008886) #23	ENSCHAG00000008899	DLK2 (ENSCHAG00000008913) #25	dnph1 (ENSCHAG00000009007) #32	mea1 (ENSCHAG00000009013)	ppp2r5d (ENSCHAG00000009027)	ENSCHAG00000009156 #27	PPP2R5D (ENSCHAG00000009221)	ENSCHAG00000009343	CUL7 (ENSCHAG00000009408) #33	SYNDIG1 (ENSCHAG00000011053)	ENSCHAG00000011088	apmap (ENSCHAG00000011098)	ENSCHAG00000011129	TMEM26 (ENSCHAG00000011144)
Denticle herring	MODERN SPECIES	18	vps26a (ENSDCDG00000030022)	supv3l1 (ENSDCDG00000030031)	ENSDCDG00000030054	tacr2 (ENSDCDG00000030348)	tspan15 (ENSDCDG00000030351)	rufy2 (ENSDCDG00000030356)	HNRNPH3 (ENSDCDG00000030423)	PBLD (ENSDCDG00000030428)	PBLD (ENSDCDG00000030430)	DNA2 (ENSDCDG00000030432)	ppm1g (ENSDCDG00000030437)	fam120b (ENSDCDG00000030440)	dld (ENSDCDG00000030444)	phf10 (ENSDCDG00000030542)	ncoa4 (ENSDCDG00000013967)	yipf3 (ENSDCDG00000013998) #22	LRRC73 (ENSDCDG00000014047) #23	ENSDCDG00000014063	DLK2 (ENSDCDG00000014083) #25	dnph1 (ENSDCDG00000014098) #32	mea1 (ENSDCDG00000014117)	ppp2r5d (ENSDCDG00000014346)	ENSDCDG00000016753 #27	ENSDCDG00000016765	fam135a (ENSDCDG00000016781)	ENSDCDG00000016803	mettl9 (ENSDCDG00000016807)	itgb3b (ENSDCDG00000016909)	ENSDCDG00000020528	hells (ENSDCDG00000020562)	vax1 (ENSDCDG00000021379)
Otophysi	ANCESTRAL SPECIES		ENSGT00990000203619.A.b.b.b.a.e.k	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00730000112471	ENSGT00390000001094	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290.c	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b
Cyprinoidei	ANCESTRAL SPECIES	5	ENSGT00390000013008	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e.k	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290.c	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b
Zebrafish	MODERN SPECIES	4	wdr11 (ENSDARG00000075245)	ENSDARG00000074653	XPO5 (ENSDARG00000098868) #20	ENSDARG00000112522 #20	wu:fj16a03 (ENSDARG00000100952)	EML4 (ENSDARG00000109443)	pkdcca (ENSDARG00000035161)	prph2b (ENSDARG00000014840)	UBR2 (ENSDARG00000070164)	ENSDARG00000031278	prkn (ENSDARG00000021555)	QKI (ENSDARG00000002026)	ENSDARG00000104860	ENSDARG00000100375	ncoa4 (ENSDARG00000021439)	yipf3 (ENSDARG00000020449) #22	LRRC73 (ENSDARG00000063411) #23	ENSDARG00000010681	DLK2 (ENSDARG00000076247) #25	dnph1 (ENSDARG00000075730) #32	mea1 (ENSDARG00000039820)	ppp2r5d (ENSDARG00000014428)	ENSDARG00000090054 #27	ENSDARG00000089355	sft2d1 (ENSDARG00000007362)	PRR18 (ENSDARG00000093768)	ENSDARG00000094016	TBXT (ENSDARG00000039806)	pde10a (ENSDARG00000003449)	c1d (ENSDARG00000021112)	pla2g12b (ENSDARG00000015662)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	87	ENSGT00940000161584.k.b.a	ENSGT00390000013008	ENSGT00990000203619.A.b.b.b.a.e.k.d	ENSGT00940000159658.b.b.a	ENSGT00940000154815.b.b.h	ENSGT00390000003039.b	ENSGT00940000158434.b	ENSGT00390000001205.a.b	ENSGT00940000157303.e.a	ENSGT00950000183075.a.a.a.a.s	ENSGT00390000011034	ENSGT00940000155310.a.b.a	ENSGT00940000172304.a.a	ENSGT00390000001094.cb	ENSGT00390000008403.a	ENSGT00940000153766.A.c.a #22
Cyprininae_a	ANCESTRAL SPECIES	53	ENSGT00940000161584.k.b.a	ENSGT00390000013008.b	ENSGT00990000203619.A.b.b.b.a.e.k.d	ENSGT00940000159658.b.b.a	ENSGT00940000154815.b.b.h	ENSGT00390000003039.b	ENSGT00940000158434.b	ENSGT00390000001205.a.b	ENSGT00940000157303.e.a	ENSGT00950000183075.a.a.a.a.s	ENSGT00390000011034.jd	ENSGT00940000155310.a.b.a	ENSGT00940000172304.a.a	ENSGT00390000001094.cb	ENSGT00390000008403.a	ENSGT00940000153766.A.c.a #22	ENSGT00390000003256.k #23	ENSGT00940000164045.b	ENSGT00940000160761.g #25	ENSGT00390000001216 #32	ENSGT00390000016927.a	ENSGT01030000234620.a.a.a.b.r	ENSGT00390000000614.b #27	ENSGT00390000016950.mb.a	ENSGT00940000154457.b	ENSGT00940000160203.d	ENSGT00940000153954.p.b #33	ENSGT00950000183147.B.j	ENSGT00940000160277.h	ENSGT00440000039984.a.g	ENSGT00940000177578
Golden-line barbel	MODERN SPECIES	1008												QKI (ENSSGRG00000045239)	ENSSGRG00000045238	ENSSGRG00000045197	ncoa4 (ENSSGRG00000045196)	yipf3 (ENSSGRG00000044869) #22	LRRC73 (ENSSGRG00000044851) #23	ENSSGRG00000044850	dnph1 (ENSSGRG00000044849) #32	dnph1 (ENSSGRG00000044848) #32
Goldfish	MODERN SPECIES	31	haao (ENSCARG00000059745)	OXER1 (ENSCARG00000059790)	KCNG3 (ENSCARG00000059822)	COX7A2L (ENSCARG00000059836)	ENSCARG00000059866	EML4 (ENSCARG00000060034)	ENSCARG00000061005	pkdcca (ENSCARG00000061017)	prph2b (ENSCARG00000061037)	UBR2 (ENSCARG00000061393)	prkn (ENSCARG00000063999)	QKI (ENSCARG00000064432)	ENSCARG00000064461	ENSCARG00000064475	ncoa4 (ENSCARG00000064498)	yipf3 (ENSCARG00000064521) #22	LRRC73 (ENSCARG00000064574) #23	ENSCARG00000064608	DLK2 (ENSCARG00000064613) #25	dnph1 (ENSCARG00000064617) #32	mea1 (ENSCARG00000064621)	ppp2r5d (ENSCARG00000064665)	ENSCARG00000065862 #27	ENSCARG00000065869	tuba4l (ENSCARG00000065884)	ENSCARG00000065953 #33	SYNDIG1 (ENSCARG00000066665)	ENSCARG00000066672	apmap (ENSCARG00000066697)	ppm1g (ENSCARG00000066740)	fam120b (ENSCARG00000066832)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000153766.A.c.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000153766.A.c.b #22
Golden-line barbel	MODERN SPECIES	696												QKI (ENSSGRG00000011011)	ENSSGRG00000011019	ENSSGRG00000011022	ncoa4 (ENSSGRG00000011026)	yipf3 (ENSSGRG00000011043) #22	ENSSGRG00000011124 #23	ENSSGRG00000011125	DLK2 (ENSSGRG00000011126) #25	ENSSGRG00000011127	mea1 (ENSSGRG00000011128)	ppp2r5d (ENSSGRG00000011173)	ENSSGRG00000011621 #27	ENSSGRG00000011624	tuba4l (ENSSGRG00000011625)	ENSSGRG00000011825 #33	ENSSGRG00000012347 #33	SYNDIG1 (ENSSGRG00000012348)	ENSSGRG00000012349	apmap (ENSSGRG00000012350)	ppm1g (ENSSGRG00000012354)
Cyprininae	ANCESTRAL SPECIES	175	ENSGT00940000161584.k.a	ENSGT00390000010899.a.b.b.a.c	ENSGT00990000203619.A.b.b.b.a.e.k.c	ENSGT00940000159658.b.b.b	ENSGT00940000154815.b.b.g	ENSGT00970000193390.c.b.b.b.a.db	ENSGT00390000003039.a	ENSGT00940000158434.a	ENSGT00390000001205.a.a	ENSGT00940000157303.e.b	ENSGT00950000183075.a.a.a.a.t	ENSGT00910000144630.a	ENSGT00940000155310.a.b.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000008403.b	ENSGT00940000153766.A.d #22	ENSGT00390000003256 #23	ENSGT00940000164045.b	ENSGT00940000160761.g #25	ENSGT00390000001216 #32	ENSGT00390000016927.a	ENSGT01030000234620.a.a.a.b.r	ENSGT00390000000614.b #27	ENSGT00390000016950.mb.a	ENSGT00940000154457.b	ENSGT00940000160203.d	ENSGT00940000153954.p.b #33	ENSGT00950000183147.B.j	ENSGT00940000160277.h	ENSGT00440000039984.a.g	ENSGT00940000177578
Goldfish	MODERN SPECIES	4	KCNG3 (ENSCARG00000006467)	COX7A2L (ENSCARG00000006474)	ENSCARG00000006488	ENSCARG00000006497	EML4 (ENSCARG00000006561)	pkdcca (ENSCARG00000006984)	ENSCARG00000007009	prph2b (ENSCARG00000007020)	UBR2 (ENSCARG00000007195)	ENSCARG00000009731	ENSCARG00000009737	ENSCARG00000009740	QKI (ENSCARG00000009745)	ENSCARG00000009754	ncoa4 (ENSCARG00000009756)	YIPF3 (ENSCARG00000009765) #22	LRRC73 (ENSCARG00000009783) #23	ENSCARG00000009795	ENSCARG00000009797	DLK2 (ENSCARG00000009800) #25	ENSCARG00000009802	mea1 (ENSCARG00000009803)	ppp2r5d (ENSCARG00000009835)	ENSCARG00000010248 #27	ENSCARG00000010256	ENSCARG00000010295	ENSCARG00000010365 #33	SYNDIG1 (ENSCARG00000012249)	ENSCARG00000012253	apmap (ENSCARG00000012259)	ppm1g (ENSCARG00000012296)
Cyprininae_a	ANCESTRAL SPECIES	216	ENSGT00390000010899.a.b.b.a.c	ENSGT00990000203619.A.b.b.b.a.e.k.c	ENSGT00940000159658.b.b.b	ENSGT00940000154815.b.b.g	ENSGT00970000193390.c.b.b.b.a.db	ENSGT00390000003039.a	ENSGT00940000158434.a	ENSGT00390000001205.a.a	ENSGT00940000157303.e.b	ENSGT00950000183075.a.a.a.a.t	ENSGT00910000144630.a	ENSGT00390000011034.kd	ENSGT00940000155310.a.b.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000008403.b	ENSGT00940000153766.A.d #22	ENSGT00390000003256.l #23	ENSGT00940000164045.a	ENSGT00940000160761.h #25	ENSGT00390000016927.b	ENSGT01030000234620.a.a.a.b.q	ENSGT00390000000614.a #27	ENSGT00940000168290.c	ENSGT00390000016950.mb.b	ENSGT00940000164832.e.b	ENSGT00940000153954.p.a #33	ENSGT00950000183147.B.i	ENSGT00940000160277.g	ENSGT00440000039984.a.h	ENSGT00940000158427.l
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	48	ENSCCRG00000066862	ENSCCRG00000065973	ENSCCRG00000067672	KCNG3 (ENSCCRG00000069780)	COX7A2L (ENSCCRG00000024155)	ENSCCRG00000068640	EML4 (ENSCCRG00000019370)	pkdcca (ENSCCRG00000053025)	prph2b (ENSCCRG00000008643)	ENSCCRG00000006695	prkn (ENSCCRG00000048867)	ENSCCRG00000076786	ENSCCRG00000072566	ENSCCRG00000076016	ncoa4 (ENSCCRG00000043940)	yipf3 (ENSCCRG00000043721) #22	ENSCCRG00000014478 #23	ENSCCRG00000074224	DLK2 (ENSCCRG00000014151) #25	dnph1 (ENSCCRG00000014149) #32	mea1 (ENSCCRG00000014142)	ppp2r5d (ENSCCRG00000017599)	ENSCCRG00000076445 #27	ENSCCRG00000041623	ENSCCRG00000064864	ENSCCRG00000032904	ENSCCRG00000006858 #33	SYNDIG1 (ENSCCRG00000009239)	ENSCCRG00000066381	apmap (ENSCCRG00000078269)	si:zfos-1056e6.1 (ENSCCRG00000066192)
Common carp reference	MODERN SPECIES	18	ENSCCRG00000072223	pkdcca (ENSCCRG00000053568)	prph2b (ENSCCRG00000066421)	ENSCCRG00000078898	ENSCCRG00000027386	ENSCCRG00000079610	prkn (ENSCCRG00000034834)	ENSCCRG00000053169	ENSCCRG00000054522	ENSCCRG00000074474	ENSCCRG00000058357	ENSCCRG00000060502	ENSCCRG00000072209	ENSCCRG00000043120	ncoa4 (ENSCCRG00000025315)	yipf3 (ENSCCRG00000014201) #22	ENSCCRG00000025345 #23	ENSCCRG00000025346	DLK2 (ENSCCRG00000075423) #25	mea1 (ENSCCRG00000032060)	ppp2r5d (ENSCCRG00000013598)	ENSCCRG00000053139 #27	ENSCCRG00000032909	ENSCCRG00000006806	ENSCCRG00000009151 #33	SYNDIG1 (ENSCCRG00000052830)	ENSCCRG00000043207	APMAP (ENSCCRG00000044787)	ppm1g (ENSCCRG00000023864)	dld (ENSCCRG00000063931)	phf10 (ENSCCRG00000038504)
Characiphysae	ANCESTRAL SPECIES	92	ENSGT00990000203619.A.b.b.b.a.e.k.a	ENSGT00990000203619.A.b.b.b.a.e.k.b	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000001094	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290.c	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b
Channel catfish	MODERN SPECIES	22	Hcar2 (ENSIPUG00000010473)	kcng3 (ENSIPUG00000010483)	COX7R (ENSIPUG00000010503)	ENSIPUG00000010529	eml4 (ENSIPUG00000010577)	ENSIPUG00000010820	PKDCC (ENSIPUG00000010826)	prph2b (ENSIPUG00000010856)	UBR2 (ENSIPUG00000010872)	ENSIPUG00000010942	prkn (ENSIPUG00000010969)	qki (ENSIPUG00000012637)	ENSIPUG00000012656	ENSIPUG00000012658	ncoa4 (ENSIPUG00000012683)	yipf3 (ENSIPUG00000012701) #22	lrrc73 (ENSIPUG00000012719) #23	ENSIPUG00000012745	dlk2 (ENSIPUG00000012767) #25	dnph1 (ENSIPUG00000012772) #32	dnph1 (ENSIPUG00000012781) #32	MEA1 (ENSIPUG00000012786)	ppp2r5d (ENSIPUG00000012800)	ENSIPUG00000012911 #27	ENSIPUG00000012933	CUL7 (ENSIPUG00000012975) #33	syndig1 (ENSIPUG00000013034)	ENSIPUG00000013075	apmap (ENSIPUG00000013146)	si:zfos-1056e6.1 (ENSIPUG00000013185)	ppm1g (ENSIPUG00000013217)
Characiphysae_b	ANCESTRAL SPECIES	91	ENSGT00990000203619.A.b.b.b.a.e.k.a	ENSGT00990000203619.A.b.b.b.a.e.k.b	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000001094	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290.c	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b
Electric eel	MODERN SPECIES	61	ENSEEEG00000010759	OXER1 (ENSEEEG00000010760)	OXER1 (ENSEEEG00000010762)	KCNG3 (ENSEEEG00000010765)	ENSEEEG00000010766	EML4 (ENSEEEG00000010769)	pkdcca (ENSEEEG00000010780)	prph2b (ENSEEEG00000010783)	UBR2 (ENSEEEG00000010888)	prkn (ENSEEEG00000012670)	QKI (ENSEEEG00000012672)	ENSEEEG00000012674	ENSEEEG00000012676	ENSEEEG00000012679	ncoa4 (ENSEEEG00000012695)	yipf3 (ENSEEEG00000012702) #22	LRRC73 (ENSEEEG00000012721) #23	ENSEEEG00000012740	DLK2 (ENSEEEG00000012815) #25	dnph1 (ENSEEEG00000012816) #32	mea1 (ENSEEEG00000012817)	ppp2r5d (ENSEEEG00000012859)	ENSEEEG00000015045 #27	CUL7 (ENSEEEG00000015057) #33	SYNDIG1 (ENSEEEG00000015099)	ENSEEEG00000015101	apmap (ENSEEEG00000015104)	ppm1g (ENSEEEG00000015107)	fam120b (ENSEEEG00000015112)	dld (ENSEEEG00000015115)	phf10 (ENSEEEG00000015121)
Characoidei	ANCESTRAL SPECIES	85	ENSGT00990000203619.A.b.b.b.a.e.k.a	ENSGT00990000203619.A.b.b.b.a.e.k.b	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000001094	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290.c	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000177578	ENSGT00940000158427	ENSGT00530000063168.b
Red-bellied piranha	MODERN SPECIES	15	ENSPNAG00000002572	KCNG3 (ENSPNAG00000004758)	COX7A2L (ENSPNAG00000002563)	ENSPNAG00000013111	EML4 (ENSPNAG00000013082)	pkdcca (ENSPNAG00000002522)	prph2b (ENSPNAG00000013015)	UBR2 (ENSPNAG00000013002)	ENSPNAG00000002457	prkn (ENSPNAG00000002443)	ENSPNAG00000012835	QKI (ENSPNAG00000002418)	ENSPNAG00000006947	ENSPNAG00000012795	ncoa4 (ENSPNAG00000012778)	yipf3 (ENSPNAG00000012759) #22	LRRC73 (ENSPNAG00000012721) #23	ENSPNAG00000012692	DLK2 (ENSPNAG00000012670) #25	dnph1 (ENSPNAG00000012654) #32	mea1 (ENSPNAG00000012647)	ppp2r5d (ENSPNAG00000012632)	ENSPNAG00000012550 #27	ENSPNAG00000012423	CUL7 (ENSPNAG00000002223) #33	SYNDIG1 (ENSPNAG00000012274)	ENSPNAG00000012252	apmap (ENSPNAG00000002173)	si:zfos-1056e6.1 (ENSPNAG00000012232)	ppm1g (ENSPNAG00000012199)	fam120b (ENSPNAG00000012134)
Mexicana tetra	MODERN SPECIES	17	OXER1 (ENSAMXG00000015045)	KCNG3 (ENSAMXG00000015014)	COX7A2L (ENSAMXG00000029555)	ENSAMXG00000043124	EML4 (ENSAMXG00000005023)	ENSAMXG00000044011	pkdcca (ENSAMXG00000038060)	prph2b (ENSAMXG00000035606)	UBR2 (ENSAMXG00000015852)	ENSAMXG00000015836	prkn (ENSAMXG00000015822)	ENSAMXG00000031914	QKI (ENSAMXG00000015808)	ENSAMXG00000041757	ncoa4 (ENSAMXG00000015735)	yipf3 (ENSAMXG00000038727) #22	LRRC73 (ENSAMXG00000015706) #23	ENSAMXG00000015682	DLK2 (ENSAMXG00000043523) #25	dnph1 (ENSAMXG00000015630) #32	mea1 (ENSAMXG00000015611)	ppp2r5d (ENSAMXG00000015584)	ENSAMXG00000043989 #27	ENSAMXG00000044073	mrps6 (ENSAMXG00000026285)	psap (ENSAMXG00000015025)	abcg2c (ENSAMXG00000015075)	SLC29A3 (ENSAMXG00000034120) ##8	c1d (ENSAMXG00000043212)	ENSAMXG00000039404	ENSAMXG00000036122
Euteleosteomorpha	ANCESTRAL SPECIES	33	ENSGT00390000013008	ENSGT00390000010899.a.b.b.a	ENSGT00990000203619.A.b.b.b.a.e	ENSGT00940000159658.b.b	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793
Acanthomorphata	ANCESTRAL SPECIES	93					ENSGT00940000159658.a.a	ENSGT00940000154815.b.b	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Euacanthomorphacea	ANCESTRAL SPECIES	60							ENSGT00940000158434	ENSGT00390000003039	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793
Pinecone sodierfish	MODERN SPECIES	6	tspan14 (ENSMMDG00005011047)	EML4 (ENSMMDG00005008132)	ENSMMDG00005008033	KCNG3 (ENSMMDG00005008032)	pkdcca (ENSMMDG00005008029)	prph2b (ENSMMDG00005008020)	UBR2 (ENSMMDG00005006039)	ENSMMDG00005005958	ENSMMDG00005005955	ENSMMDG00005005952	prkn (ENSMMDG00005005950)	ENSMMDG00005005947	QKI (ENSMMDG00005005941)	ENSMMDG00005005935	ncoa4 (ENSMMDG00005005929)	yipf3 (ENSMMDG00005005553) #22	dnph1 (ENSMMDG00005005552) #32	ENSMMDG00005005548	ENSMMDG00005005545	DLK2 (ENSMMDG00005005539) #25	LRRC73 (ENSMMDG00005005537) #23	ENSMMDG00005018825	ppp2r5d (ENSMMDG00005018729)	ENSMMDG00005018716 #27	CUL7 (ENSMMDG00005018677) #33	SYNDIG1 (ENSMMDG00005018663)	CST7 (ENSMMDG00005018660)	apmap (ENSMMDG00005018655)	ENSMMDG00005018653	acss1 (ENSMMDG00005018619)	ENSMMDG00005018606
Percomorphaceae	ANCESTRAL SPECIES	45							ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793
Tiger tail seahorse	MODERN SPECIES	512	akt3a (ENSHCOG00000002340)	zbtb18 (ENSHCOG00000002345)	adss2 (ENSHCOG00000002364)	slc29a1a (ENSHCOG00000002391) #8	atl2 (ENSHCOG00000002418)	olig3 (ENSHCOG00000002447)	ENSHCOG00000002461	ENSHCOG00000002474 #27	ppp2r5d (ENSHCOG00000002595)	mea1 (ENSHCOG00000002628)	ENSHCOG00000002634	EML4 (ENSHCOG00000002665)	tspan14 (ENSHCOG00000002685)	prph2b (ENSHCOG00000002689)	ncoa4 (ENSHCOG00000002698)	yipf3 (ENSHCOG00000002709) #22	dnph1 (ENSHCOG00000002717) #32	ENSHCOG00000002739
Percomorphaceae_B	ANCESTRAL SPECIES	4				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Ovalentaria	ANCESTRAL SPECIES	18				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000154411	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Atherinomorphae	ANCESTRAL SPECIES	41					ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT01030000236263	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT01040000241272	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Oryzias	ANCESTRAL SPECIES	6	ENSGT00940000155790	ENSGT00940000155560.k.c	ENSGT00940000155560.l	ENSGT00390000005203	ENSGT00940000156754.a.a	ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT01040000241272	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000160793
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00940000154711.a.a	ENSGT00940000155790	ENSGT00940000155560.l	ENSGT00390000005203	ENSGT00940000156754.a.a	ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT01040000241272	ENSGT00390000000614 #27	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000160793	ENSGT01100000263540.A.a
Javanese ricefish	MODERN SPECIES	6	ENSOJAG00000012973	ENSOJAG00000012912	ENSOJAG00000012898	ENSOJAG00000012794	ENSOJAG00000012768	ENSOJAG00000012753	ENSOJAG00000012745	EML4 (ENSOJAG00000010190)	tspan14 (ENSOJAG00000009951)	KCNG3 (ENSOJAG00000009932)	prph2b (ENSOJAG00000009923)	ENSOJAG00000009844	prkn (ENSOJAG00000009769)	ENSOJAG00000009756	ncoa4 (ENSOJAG00000009677)	yipf3 (ENSOJAG00000009663) #22	dnph1 (ENSOJAG00000009647) #32	ENSOJAG00000009635	ENSOJAG00000009601 #25	LRRC73 (ENSOJAG00000009578) #23	mea1 (ENSOJAG00000009565)	ppp2r5d (ENSOJAG00000009323)	ENSOJAG00000009253 #27	ENSOJAG00000009229	SYNDIG1 (ENSOJAG00000007544)	CST7 (ENSOJAG00000007531)	apmap (ENSOJAG00000007500)	ENSOJAG00000007489	ENSOJAG00000007450	vsx1 (ENSOJAG00000007405)	AIFM2 (ENSOJAG00000007164)
Indian medaka	MODERN SPECIES	27	ENSOMEG00000017459	ENSOMEG00000017540	cep76 (ENSOMEG00000017644)	id4 (ENSOMEG00000017701)	ENSOMEG00000017741	ENSOMEG00000017755	EML4 (ENSOMEG00000017876)	tspan14 (ENSOMEG00000017924)	KCNG3 (ENSOMEG00000017940)	prph2b (ENSOMEG00000017960)	UBR2 (ENSOMEG00000020662)	ENSOMEG00000021681	prkn (ENSOMEG00000021728)	ENSOMEG00000021741	ncoa4 (ENSOMEG00000021751)	yipf3 (ENSOMEG00000021759) #22	dnph1 (ENSOMEG00000021767) #32	ENSOMEG00000021792	DLK2 (ENSOMEG00000021843) #25	LRRC73 (ENSOMEG00000021865) #23	mea1 (ENSOMEG00000021885)	ppp2r5d (ENSOMEG00000021899)	ENSOMEG00000021912	ENSOMEG00000021957 #27	ENSOMEG00000022031	CUL7 (ENSOMEG00000022216) #33	SYNDIG1 (ENSOMEG00000022278)	CST7 (ENSOMEG00000022297)	apmap (ENSOMEG00000022324)	vsx1 (ENSOMEG00000022331)	entpd6 (ENSOMEG00000022360)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00940000161285.a	ENSGT00390000016158	ENSGT00940000164014.a.a	ENSGT00940000155560.l	ENSGT00390000005203	ENSGT00940000156754.a.a	ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000004582.h
Japanese Medaka HdrR	MODERN SPECIES	6	ENSORLG00000023819	ENSORLG00000022583	ENSORLG00000024904	ENSORLG00000029935	ENSORLG00000025158	ENSORLG00000003462	EML4 (ENSORLG00000003456)	tspan14 (ENSORLG00000003423)	KCNG3 (ENSORLG00000003367)	ENSORLG00000003361	UBR2 (ENSORLG00000003350)	ENSORLG00000025354	prkn (ENSORLG00000029510)	ENSORLG00000026680	ncoa4 (ENSORLG00000003269)	yipf3 (ENSORLG00000003250) #22	ENSORLG00000029764	ENSORLG00000026021	dnph1 (ENSORLG00000003216) #32	ENSORLG00000003209	ENSORLG00000003193 #25	LRRC73 (ENSORLG00000003187) #23	mea1 (ENSORLG00000003180)	ppp2r5d (ENSORLG00000003171)	ENSORLG00000026208 #27	ENSORLG00000003131	ENSORLG00000023888	CUL7 (ENSORLG00000003116) #33	SYNDIG1 (ENSORLG00000003047)	CST7 (ENSORLG00000024898)	apmap (ENSORLG00000003030)
Cyprinodontiformes	ANCESTRAL SPECIES	37	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT01040000241272	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT01030000236263	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00940000178738	ENSGT00940000159658.a.a	ENSGT00940000159235	ENSGT00940000158434	ENSGT00390000003039
Cyprinodontoidei	ANCESTRAL SPECIES	40	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT01040000241272	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT01030000236263	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00940000178738	ENSGT00940000159658.a.a	ENSGT00940000159235	ENSGT00940000158434	ENSGT00390000003039
NAME_4	ANCESTRAL SPECIES	245								ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00940000178738	ENSGT00940000159658.a.a	ENSGT00940000159235	ENSGT00940000158434	ENSGT00390000003039
Sheepshead minnow	MODERN SPECIES	1193					ENSCVAG00000008895	ENSCVAG00000008920 #33	ENSCVAG00000008951 #33	prph2b (ENSCVAG00000008955)	UBR2 (ENSCVAG00000009051)	ENSCVAG00000009108	ENSCVAG00000009118	ENSCVAG00000009136	ENSCVAG00000009140	ENSCVAG00000000253	ncoa4 (ENSCVAG00000009157)	yipf3 (ENSCVAG00000009195) #22	dnph1 (ENSCVAG00000009220) #32	apmap (ENSCVAG00000009289)	ENSCVAG00000009303	KCNG3 (ENSCVAG00000009307)	tspan14 (ENSCVAG00000009338)	EML4 (ENSCVAG00000009497)	ENSCVAG00000009511
Mummichog	MODERN SPECIES	1319															ncoa4 (ENSFHEG00000009434)	yipf3 (ENSFHEG00000009472) #22	dnph1 (ENSFHEG00000009514) #32
Poeciliinae	ANCESTRAL SPECIES	36	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT01030000236263	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00940000159235	ENSGT00940000158434	ENSGT00390000003039	ENSGT00940000166655
Poecilia	ANCESTRAL SPECIES	59	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954.qb.b #33	ENSGT00940000153954.qb.a #33	ENSGT00950000183147.B	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT01030000236263	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00940000159235	ENSGT00940000158434	ENSGT00390000003039	ENSGT00940000166655
NAME_6	ANCESTRAL SPECIES	205	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954.qb.b #33	ENSGT00940000153954.qb.a #33	ENSGT00950000183147.B	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT01030000236263	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000160277
Sailfin molly	MODERN SPECIES	2139											ENSPLAG00000018401	ENSPLAG00000018382	ENSPLAG00000018370	ENSPLAG00000018358	ncoa4 (ENSPLAG00000018344)	yipf3 (ENSPLAG00000018278) #22	dnph1 (ENSPLAG00000018237) #32	ENSPLAG00000018230	ENSPLAG00000018215
Amazon molly	MODERN SPECIES	930						ENSPFOG00000003324	ENSPFOG00000003358 #33	ENSPFOG00000003479	prph2b (ENSPFOG00000003489)	UBR2 (ENSPFOG00000003667)	ENSPFOG00000005389	prkn (ENSPFOG00000005450)	ENSPFOG00000023281	ENSPFOG00000005622	ncoa4 (ENSPFOG00000005630)	yipf3 (ENSPFOG00000005709) #22	dnph1 (ENSPFOG00000005821) #32	apmap (ENSPFOG00000005885)	ENSPFOG00000005999
Guppy	MODERN SPECIES	445	LRRC73 (ENSPREG00000013444) #23	mea1 (ENSPREG00000013461)	ENSPREG00000013474	ENSPREG00000013514 #27	ENSPREG00000013569	ENSPREG00000013579	ENSPREG00000013602 #33	ENSPREG00000013619 #33	ENSPREG00000013633	prph2b (ENSPREG00000013649)	ENSPREG00000013668	ENSPREG00000013695	ENSPREG00000013710	ENSPREG00000013726	ncoa4 (ENSPREG00000013735)	yipf3 (ENSPREG00000013751) #22	dnph1 (ENSPREG00000013768) #32	apmap (ENSPREG00000013778)	ENSPREG00000013796	ENSPREG00000013811 #32	tspan14 (ENSPREG00000013816)	ENSPREG00000013824	ENSPREG00000013852	ENSPREG00000013870
Platyfish	MODERN SPECIES	14	ENSXMAG00000025290 #33	ENSXMAG00000022911 #33	ENSXMAG00000023176	prph2b (ENSXMAG00000016497)	ENSXMAG00000029313	UBR2 (ENSXMAG00000016386)	ENSXMAG00000021413	prkn (ENSXMAG00000003878)	ENSXMAG00000028431	ENSXMAG00000028741	ENSXMAG00000027850	ENSXMAG00000025345	ENSXMAG00000024034	ncoa4 (ENSXMAG00000002456)	ENSXMAG00000023212	yipf3 (ENSXMAG00000022186) #22	ENSXMAG00000028806	dnph1 (ENSXMAG00000025860) #32	apmap (ENSXMAG00000009084)	ENSXMAG00000009082	tspan14 (ENSXMAG00000009071)	EML4 (ENSXMAG00000009050)	ENSXMAG00000009048	ENSXMAG00000009019	marchf5 (ENSXMAG00000007675)	cpeb3 (ENSXMAG00000007652)	ENSXMAG00000025492	CCNJ (ENSXMAG00000007625)	blnk (ENSXMAG00000025725)	dntt (ENSXMAG00000007601)	ENSXMAG00000019828
Aplocheiloidei	ANCESTRAL SPECIES	128		ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00440000039984.a	ENSGT00940000178738	ENSGT00940000159658.a.a	ENSGT00940000159235	ENSGT00940000158434
Mangrove rivulus	MODERN SPECIES	886																yipf3 (ENSKMAG00000005842) #22	dnph1 (ENSKMAG00000005810) #32	apmap (ENSKMAG00000005770)
Turquoise killifish	MODERN SPECIES	22											ENSNFUG00015015528	prkn (ENSNFUG00015015478)	ENSNFUG00015015464	ENSNFUG00015015457	ncoa4 (ENSNFUG00015015451)	yipf3 (ENSNFUG00015015244) #22	DNPH1 (ENSNFUG00015015168) #32	apmap (ENSNFUG00015015131)	ENSNFUG00015015126	KCNG3 (ENSNFUG00015015114)	ENSNFUG00015015107	tspan14 (ENSNFUG00015015088)	ENSNFUG00015015070
Ovalentaria_B	ANCESTRAL SPECIES	7				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000160793
Pomacentridae	ANCESTRAL SPECIES	131					ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00390000008403	ENSGT00730000112471	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000154411	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000160793	ENSGT01100000263540.A.a
Pomacentridae_A	ANCESTRAL SPECIES	135		ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00940000167655	ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000154411
Amphiprion	ANCESTRAL SPECIES	255																ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954.lb #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	2377																yipf3 (ENSAOCG00000012307) #22	dnph1 (ENSAOCG00000012338) #32
Clown anemonefish	MODERN SPECIES	191																yipf3 (ENSAOCG00000012927) #22
Orange clownfish	MODERN SPECIES	12															serpine3 (ENSAPEG00000017283)	yipf3 (ENSAPEG00000017176) #22	dnph1 (ENSAPEG00000017152) #32	ENSAPEG00000017111	DLK2 (ENSAPEG00000017072) #25	ENSAPEG00000017052	LRRC73 (ENSAPEG00000017025) #23	mea1 (ENSAPEG00000016996)	ENSAPEG00000016985	ppp2r5d (ENSAPEG00000016905)	ENSAPEG00000016872 #27	ENSAPEG00000016851	ENSAPEG00000016822 #33	ENSAPEG00000016804	ENSAPEG00000016787 #33	SYNDIG1 (ENSAPEG00000016767)	ENSAPEG00000016731
Spiny chromis	MODERN SPECIES	1724													prkn (ENSAPOG00000018969)	ncoa4 (ENSAPOG00000018954)	ENSAPOG00000018836	yipf3 (ENSAPOG00000018819) #22	dnph1 (ENSAPOG00000018781) #32	ENSAPOG00000018750
Bicolor damselfish	MODERN SPECIES	2753																yipf3 (ENSSPAG00000020173) #22	dnph1 (ENSSPAG00000020160) #32
Cichlidae	ANCESTRAL SPECIES	38						ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000160793
Midas cichlid	MODERN SPECIES	9														QKI (ENSACIG00000004082)	ncoa4 (ENSACIG00000003970)	yipf3 (ENSACIG00000003945) #22	dnph1 (ENSACIG00000003905) #32	ENSACIG00000003876	ENSACIG00000003848 #25	LRRC73 (ENSACIG00000003832) #23	mea1 (ENSACIG00000003821)	ppp2r5d (ENSACIG00000003769)	ENSACIG00000003759	ENSACIG00000003738 #27	ENSACIG00000003653 #33	ENSACIG00000003621 #33	SYNDIG1 (ENSACIG00000003603)	CST7 (ENSACIG00000003585)	apmap (ENSACIG00000003569)	acss1 (ENSACIG00000003543)	ENSACIG00000003515
Pseudocrenilabrinae	ANCESTRAL SPECIES	32						ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000181480	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000160793
Nile tilapia	MODERN SPECIES	4	ENSONIG00000027356	ENSONIG00000040198	ENSONIG00000040724	ENSONIG00000037395	ENSONIG00000006963	tspan14 (ENSONIG00000006961)	ENSONIG00000040039	KCNG3 (ENSONIG00000038229)	prph2b (ENSONIG00000032901)	ENSONIG00000039968	UBR2 (ENSONIG00000007141)	prkn (ENSONIG00000007137)	ENSONIG00000007133	ENSONIG00000038915	ncoa4 (ENSONIG00000007129)	yipf3 (ENSONIG00000007123) #22	ENSONIG00000038571	ENSONIG00000007118	ENSONIG00000007116 #25	LRRC73 (ENSONIG00000007112) #23	mea1 (ENSONIG00000039258)	ppp2r5d (ENSONIG00000007102)	ENSONIG00000039687 #27	ENSONIG00000025397	CUL7 (ENSONIG00000007097) #33	SYNDIG1 (ENSONIG00000007096)	CST7 (ENSONIG00000007095)	apmap (ENSONIG00000007089)	ENSONIG00000030606	acss1 (ENSONIG00000007083)	ENSONIG00000007088
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11						ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000181480	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000160793
Lyretail cichlid	MODERN SPECIES	462					ENSNBRG00000008878	EML4 (ENSNBRG00000008919)	tspan14 (ENSNBRG00000009050)	KCNG3 (ENSNBRG00000009076)	prph2b (ENSNBRG00000009087)	UBR2 (ENSNBRG00000009106)	ENSNBRG00000009196	prkn (ENSNBRG00000009234)	ENSNBRG00000009287	ENSNBRG00000009304	ncoa4 (ENSNBRG00000009323)	yipf3 (ENSNBRG00000009353) #22	ENSNBRG00000009389	ENSNBRG00000009416	ENSNBRG00000009456 #25	LRRC73 (ENSNBRG00000009473) #23	mea1 (ENSNBRG00000009492)	ppp2r5d (ENSNBRG00000009510)	ENSNBRG00000009553 #27	ENSNBRG00000009626	ENSNBRG00000009651 #33	ENSNBRG00000009758 #33	SYNDIG1 (ENSNBRG00000009766)	apmap (ENSNBRG00000009783)	ENSNBRG00000009802	ENSNBRG00000009811	vsx1 (ENSNBRG00000009816)
Haplochromini	ANCESTRAL SPECIES	10															ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000160793
Burton s mouthbrooder	MODERN SPECIES	1230															ncoa4 (ENSHBUG00000009500)	yipf3 (ENSHBUG00000009530) #22	dnph1 (ENSHBUG00000009546) #32	ENSHBUG00000009566	ENSHBUG00000009580 #25	LRRC73 (ENSHBUG00000009616) #23
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000157593	ENSGT00390000017746	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000153566.b	ENSGT00940000153335.a.b	ENSGT00390000008797	ENSGT00950000182909.b.b.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a	ENSGT00390000005029	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b.k	ENSGT00390000000614 #27	ENSGT00940000172797	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550
P. nyererei	MODERN SPECIES	492	ENSPNYG00000003466	exo1 (ENSPNYG00000003414)	yipf4 (ENSPNYG00000003344)	ncapd3 (ENSPNYG00000002918)	cdk1 (ENSPNYG00000002812)	ctu2 (ENSPNYG00000002790)	RNF166 (ENSPNYG00000002749)	cyp17a1 (ENSPNYG00000002693)	borcs7 (ENSPNYG00000002686)	nt5c2a (ENSPNYG00000002605)	ENSPNYG00000002573	fgf8a (ENSPNYG00000002299)	fbxw4 (ENSPNYG00000002264)	ENSPNYG00000002257	ncoa4 (ENSPNYG00000002178)	yipf3 (ENSPNYG00000002133) #22	dnph1 (ENSPNYG00000002105) #32	ENSPNYG00000002070	ENSPNYG00000002039 #25	LRRC73 (ENSPNYG00000002011) #23	mea1 (ENSPNYG00000001966)
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT01030000235521.b	ENSGT00940000153566.b	ENSGT00940000153335.a.b	ENSGT00390000008797.g	ENSGT00950000182909.b.b.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a	ENSGT00390000005029	ENSGT00490000044642.a.a.a.a.a.a.d.a.b.b.d.b.d.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b.k	ENSGT00390000000614 #27	ENSGT00940000172797	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550
Eastern happy	MODERN SPECIES	4	cdk1 (ENSACLG00000004925)	ENSACLG00000004924	ENSACLG00000004914	ctu2 (ENSACLG00000004899)	RNF166 (ENSACLG00000004886)	cyp17a1 (ENSACLG00000004868)	borcs7 (ENSACLG00000004855)	nt5c2a (ENSACLG00000004818)	slc2a15a (ENSACLG00000004729)	ENSACLG00000004709	fgf8a (ENSACLG00000004676)	fbxw4 (ENSACLG00000004635)	ENSACLG00000004624	ENSACLG00000004598	ncoa4 (ENSACLG00000004547)	yipf3 (ENSACLG00000004518) #22	dnph1 (ENSACLG00000004498) #32	ENSACLG00000004450	ENSACLG00000004316	ENSACLG00000004297 #25	LRRC73 (ENSACLG00000004272) #23	mea1 (ENSACLG00000004254)	ppp2r5d (ENSACLG00000004203)	ENSACLG00000004195	ENSACLG00000004157 #27	ENSACLG00000004135	ENSACLG00000004118 #33	ENSACLG00000004108 #33	SYNDIG1 (ENSACLG00000004089)	CST7 (ENSACLG00000004075)	apmap (ENSACLG00000004058)
Zebra mbuna	MODERN SPECIES	1095														ENSMZEG00005002175	ncoa4 (ENSMZEG00005002183)	yipf3 (ENSMZEG00005002205) #22	dnph1 (ENSMZEG00005002254) #32	ENSMZEG00005002273	ENSMZEG00005002281 #25	LRRC73 (ENSMZEG00005002318) #23	mea1 (ENSMZEG00005002338)	ppp2r5d (ENSMZEG00005002344)	ENSMZEG00005002385	ENSMZEG00005002401	CUL7 (ENSMZEG00005002437) #33	SYNDIG1 (ENSMZEG00005002508)	ENSMZEG00005002540	apmap (ENSMZEG00005002551)	ENSMZEG00005002581	ENSMZEG00005002604	ENSMZEG00005002638
Percomorphaceae_C	ANCESTRAL SPECIES	18				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	26				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT01100000263507.E.a.a.a.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Anabantaria	ANCESTRAL SPECIES	38					ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT01100000263533.b.a.a.b	ENSGT00940000154411	ENSGT00940000158550
Zig-zag eel	MODERN SPECIES	6	NCKAP1 (ENSMAMG00000022418)	ENSMAMG00000022424	ENSMAMG00000022427	ENSMAMG00000025279	ENSMAMG00000022431	ENSMAMG00000022435	ENSMAMG00000026809	ENSMAMG00000022439	ENSMAMG00000022441	ENSMAMG00000022444	ENSMAMG00000028121	prkn (ENSMAMG00000022445)	ENSMAMG00000027318	ENSMAMG00000026062	ncoa4 (ENSMAMG00000022452)	yipf3 (ENSMAMG00000022454) #22	ENSMAMG00000022460 #32	ENSMAMG00000022464	ENSMAMG00000022467 #23	ENSMAMG00000022469 #25	mea1 (ENSMAMG00000022473)	ppp2r5d (ENSMAMG00000022474)	ENSMAMG00000022480 #27	ENSMAMG00000022485	SYNDIG1 (ENSMAMG00000022489)	CST7 (ENSMAMG00000022492)	APMAP (ENSMAMG00000022493)	ENSMAMG00000022502	ACSS1 (ENSMAMG00000022509)	vsx1 (ENSMAMG00000022512)	ENTPD6 (ENSMAMG00000022517)
Anabantoidei	ANCESTRAL SPECIES	35							ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT01100000263533.b.a.a.b	ENSGT01100000263491.a.a.c.b	ENSGT00940000154411	ENSGT00940000158550
Siamese fighting fish	MODERN SPECIES	6						prph2b (ENSBSLG00000023017)	KCNG3 (ENSBSLG00000023011)	tspan14 (ENSBSLG00000022977)	EML4 (ENSBSLG00000022446)	ENSBSLG00000022324	ENSBSLG00000021853	tspan14 (ENSBSLG00000021784)	prph2b (ENSBSLG00000021704)	prkn (ENSBSLG00000021447)	ncoa4 (ENSBSLG00000021399)	yipf3 (ENSBSLG00000021247) #22	dnph1 (ENSBSLG00000021180) #32	ENSBSLG00000021094	ENSBSLG00000020988 #25	LRRC73 (ENSBSLG00000020944) #23	mea1 (ENSBSLG00000020540)	ppp2r5d (ENSBSLG00000019953)	ENSBSLG00000019795	CUL7 (ENSBSLG00000019049) #33	SYNDIG1 (ENSBSLG00000019001)	CST7 (ENSBSLG00000018971)	apmap (ENSBSLG00000018848)	ENSBSLG00000018771	acss1 (ENSBSLG00000017444)	ENSBSLG00000017229	vsx1 (ENSBSLG00000017100)
Climbing perch	MODERN SPECIES	6							ENSATEG00000022754	ENSATEG00000022738	ENSATEG00000022728	ENSATEG00000022722	ENSATEG00000022672	prkn (ENSATEG00000022611)	ENSATEG00000028192	ENSATEG00000022584	ncoa4 (ENSATEG00000022558)	yipf3 (ENSATEG00000022524) #22	ENSATEG00000022504 #32	ENSATEG00000025538	ENSATEG00000022466	ENSATEG00000022427 #25	ENSATEG00000022394	ENSATEG00000022373 #23	mea1 (ENSATEG00000022363)	ENSATEG00000022337	ENSATEG00000022319	ENSATEG00000022253 #33	SYNDIG1 (ENSATEG00000022241)	CST7 (ENSATEG00000022225)	APMAP (ENSATEG00000022167)	ACSS1 (ENSATEG00000022038)	ENSATEG00000022064
Carangaria	ANCESTRAL SPECIES	33				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000155310.a.b	ENSGT00390000011034	ENSGT00910000144630.a	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000154411	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Pleuronectoidei	ANCESTRAL SPECIES	73							ENSGT00940000159235	ENSGT00940000158434	ENSGT00390000003039	ENSGT00940000159658.a.a	ENSGT00390000011034	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b
Turbot	MODERN SPECIES	6										ENSSMAG00000033407	ENSSMAG00000006576	ENSSMAG00000006759	ENSSMAG00000006806	ENSSMAG00000007047	ncoa4 (ENSSMAG00000007072)	yipf3 (ENSSMAG00000007107) #22	ENSSMAG00000007129 #32	ENSSMAG00000007149	ENSSMAG00000007190 #25	ENSSMAG00000007204 #23	mea1 (ENSSMAG00000007230)	ENSSMAG00000007248	ENSSMAG00000037461 #27	ENSSMAG00000007361	CST7 (ENSSMAG00000007379)	APMAP (ENSSMAG00000007388)	ACSS1 (ENSSMAG00000007425)	vsx1 (ENSSMAG00000007488)	ENTPD6 (ENSSMAG00000007560)	ENSSMAG00000007617	abhd12 (ENSSMAG00000007585)
Tongue sole	MODERN SPECIES	3	ENSCSEG00000003932	ENSCSEG00000003946	rtkn2 (ENSCSEG00000003956)	ENSCSEG00000003976	ENSCSEG00000003978	ENSCSEG00000003981	EML4 (ENSCSEG00000003987)	ENSCSEG00000003996	KCNG3 (ENSCSEG00000003997)	prkn (ENSCSEG00000004001)	UBR2 (ENSCSEG00000004011)	prph2b (ENSCSEG00000004046)	prph2b (ENSCSEG00000004051)	ncoa4 (ENSCSEG00000004058)	ENSCSEG00000004072	yipf3 (ENSCSEG00000004074) #22	ENSCSEG00000004081	ENSCSEG00000004092	ENSCSEG00000004107	ENSCSEG00000004119	ENSCSEG00000004128	ENSCSEG00000004134	ENSCSEG00000004138	elovl6l (ENSCSEG00000004155)	elovl6l (ENSCSEG00000004158)	ENSCSEG00000004163	nfkb2 (ENSCSEG00000004183)	sncga (ENSCSEG00000004197)	shld2 (ENSCSEG00000004202)	glud1a (ENSCSEG00000004209)	ENSCSEG00000004222
Carangaria_A	ANCESTRAL SPECIES	76				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000155310.a.b	ENSGT00390000011034	ENSGT00910000144630.a	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT01100000263507.E.a.a.a.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Seriola	ANCESTRAL SPECIES	98																ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000157467.v	ENSGT00940000154411	ENSGT00940000158550
Greater amberjack	MODERN SPECIES	55	ENSSDUG00000005430	ENSSDUG00000005414	cyp26c1 (ENSSDUG00000005393)	ENSSDUG00000005292	ENSSDUG00000005267	ppp1r3ca (ENSSDUG00000005259)	HECTD2 (ENSSDUG00000005226)	ENSSDUG00000005211	pcgf5a (ENSSDUG00000005188)	ENSSDUG00000005170	ANKRD1 (ENSSDUG00000005146)	ENSSDUG00000005097	ENSSDUG00000004734	HTR7 (ENSSDUG00000004660)	ARFGEF3 (ENSSDUG00000004588)	yipf3 (ENSSDUG00000004560) #22	dnph1 (ENSSDUG00000004542) #32	ENSSDUG00000004501	ENSSDUG00000004452 #25	LRRC73 (ENSSDUG00000004427) #23	mea1 (ENSSDUG00000004418)	ppp2r5d (ENSSDUG00000004373)	ENSSDUG00000004358 #27	ENSSDUG00000004331	CUL7 (ENSSDUG00000004222) #33	SYNDIG1 (ENSSDUG00000004206)	CST7 (ENSSDUG00000004191)	apmap (ENSSDUG00000004176)	acss1 (ENSSDUG00000004130)	ENSSDUG00000004089	vsx1 (ENSSDUG00000004078)
Yellowtail amberjack	MODERN SPECIES	1903																yipf3 (ENSSLDG00000000319) #22	dnph1 (ENSSLDG00000000377) #32
Barramundi perch	MODERN SPECIES	646													KCNG3 (ENSLCAG00010006272)	ENSLCAG00010006277	ncoa4 (ENSLCAG00010006292)	yipf3 (ENSLCAG00010006306) #22	dnph1 (ENSLCAG00010006316) #32	ENSLCAG00010006320	DLK2 (ENSLCAG00010006331) #25	LRRC73 (ENSLCAG00010006343) #23	mea1 (ENSLCAG00010006346)	ENSLCAG00010006350
Eupercaria	ANCESTRAL SPECIES	15				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000155310.a.b	ENSGT00390000011034	ENSGT00910000144630.a	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00940000154866.B.a	ENSGT00940000153566.b	ENSGT00940000163454.a.a.a.b.a.a.b.a.a	ENSGT00940000155989.e	ENSGT01010000222287.B.a.a.a.a.a.a	ENSGT00530000064150	ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000159658.a.a	ENSGT00390000011034	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a
Fugu	MODERN SPECIES	16	ENSTRUG00000001097	ENSTRUG00000028338	ENSTRUG00000032084	ENSTRUG00000007823	HTR7 (ENSTRUG00000007675)	ARFGEF3 (ENSTRUG00000007336)	ENSTRUG00000022034	EML4 (ENSTRUG00000006655)	tspan14 (ENSTRUG00000006403)	KCNG3 (ENSTRUG00000006356)	prkn (ENSTRUG00000006244)	UBR2 (ENSTRUG00000004807)	prph2b (ENSTRUG00000004626)	ENSTRUG00000024222	ncoa4 (ENSTRUG00000003924)	yipf3 (ENSTRUG00000003502) #22	dnph1 (ENSTRUG00000003415) #32	ENSTRUG00000003134	ENSTRUG00000003130 #25	LRRC73 (ENSTRUG00000003016) #23	mea1 (ENSTRUG00000002736)	ENSTRUG00000020191	ENSTRUG00000031439 #27	CUL7 (ENSTRUG00000001875) #33	SYNDIG1 (ENSTRUG00000003768)	CST7 (ENSTRUG00000027365)	apmap (ENSTRUG00000003885)	acss1 (ENSTRUG00000004153)	vsx1 (ENSTRUG00000004377)	entpd6 (ENSTRUG00000007946)	ENSTRUG00000030656
Tetraodon	MODERN SPECIES	9	ENSTNIG00000013398	ENSTNIG00000013397	ENSTNIG00000013396	ENSTNIG00000013395	ENSTNIG00000013394	HTR7 (ENSTNIG00000013393)	ARFGEF3 (ENSTNIG00000013392)	EML4 (ENSTNIG00000013391)	tspan14 (ENSTNIG00000013390)	KCNG3 (ENSTNIG00000013389)	prkn (ENSTNIG00000013388)	UBR2 (ENSTNIG00000013387)	prph2b (ENSTNIG00000013386)	ENSTNIG00000013385	ncoa4 (ENSTNIG00000013384)	yipf3 (ENSTNIG00000013383) #22	dnph1 (ENSTNIG00000013382) #32	ENSTNIG00000013381	DLK2 (ENSTNIG00000013380) #25	LRRC73 (ENSTNIG00000013379) #23	mea1 (ENSTNIG00000013378)	ppp2r5d (ENSTNIG00000013377)	ENSTNIG00000013376	ENSTNIG00000013375 #27	CUL7 (ENSTNIG00000013374) #33	CST7 (ENSTNIG00000013373)	apmap (ENSTNIG00000013372)	acss1 (ENSTNIG00000013371)	ENSTNIG00000013370	vsx1 (ENSTNIG00000013369)	entpd6 (ENSTNIG00000013368)
Eupecaria_A	ANCESTRAL SPECIES	1				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT01100000263520.a.a.b.a.a
Ballan wrasse	MODERN SPECIES	251	fignl1 (ENSLBEG00000023009)	ttl (ENSLBEG00000022981)	ENSLBEG00000022960	EML4 (ENSLBEG00000022841)	tspan14 (ENSLBEG00000022753)	ENSLBEG00000022740	KCNG3 (ENSLBEG00000022725)	QKI (ENSLBEG00000022702)	prkn (ENSLBEG00000022622)	ENSLBEG00000022556	UBR2 (ENSLBEG00000022453)	prph2b (ENSLBEG00000022386)	ENSLBEG00000022330	ENSLBEG00000022301	ncoa4 (ENSLBEG00000022251)	yipf3 (ENSLBEG00000022187) #22	dnph1 (ENSLBEG00000022160) #32	ENSLBEG00000022136
Eupecaria_B	ANCESTRAL SPECIES	3				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00950000183147.B	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT01100000263520.a.a.b.a.a
Perciformes	ANCESTRAL SPECIES	49				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000155310.a.b	ENSGT00390000011034	ENSGT00910000144630.a	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00730000112471	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33
Perciformes_a	ANCESTRAL SPECIES	113												ENSGT00390000011034	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	556																yipf3 (ENSSLUG00000007837) #22	dnph1 (ENSSLUG00000007842) #32	ENSSLUG00000007855
Pike perch	MODERN SPECIES	394								ENSSLUG00000014971	ENSSLUG00000015003	ENSSLUG00000015010	UBR2 (ENSSLUG00000015250)	ENSSLUG00000019566	prph2b (ENSSLUG00000019570)	ENSSLUG00000019579	ncoa4 (ENSSLUG00000019580)	yipf3 (ENSSLUG00000019585) #22	dnph1 (ENSSLUG00000019589) #32	ENSSLUG00000019611
Cottioidei	ANCESTRAL SPECIES	59							ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00390000011034	ENSGT00910000144630.a	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00940000162367.f	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00390000018613.a
Lumpfish	MODERN SPECIES	6					ENSCLMG00005014198	ENSCLMG00005014199	tspan14 (ENSCLMG00005014200)	ENSCLMG00005014202	prkn (ENSCLMG00005014203)	ENSCLMG00005014204	ENSCLMG00005014205	UBR2 (ENSCLMG00005014234)	PRPH2 (ENSCLMG00005015602)	ENSCLMG00005015603	ncoa4 (ENSCLMG00005001362)	yipf3 (ENSCLMG00005001411) #22	dnph1 (ENSCLMG00005001477) #32	ENSCLMG00005001490	DLK2 (ENSCLMG00005001504) #25	LRRC73 (ENSCLMG00005001519) #23	mea1 (ENSCLMG00005001543)	PPP2R5D (ENSCLMG00005001730)	ENSCLMG00005002006	gins1 (ENSCLMG00005002187)	abhd12 (ENSCLMG00005002188)	ENSCLMG00005002189	entpd6 (ENSCLMG00005002190)	ENSCLMG00005002203	vsx1 (ENSCLMG00005002206)	ENSCLMG00005002223	ACSS1 (ENSCLMG00005002247)
Stickleback	MODERN SPECIES	6								ENSGACG00000012414	EML4 (ENSGACG00000012405)	tspan14 (ENSGACG00000012392)	prkn (ENSGACG00000012371)	UBR2 (ENSGACG00000012336)	prph2b (ENSGACG00000012325)	ENSGACG00000012324	ncoa4 (ENSGACG00000012317)	yipf3 (ENSGACG00000012266) #22	DNPH1 (ENSGACG00000012262) #32	ENSGACG00000012257	DLK2 (ENSGACG00000012250) #25	LRRC73 (ENSGACG00000012246) #23	mea1 (ENSGACG00000012242)	ppp2r5d (ENSGACG00000012222)	ENSGACG00000012217 #27	ENSGACG00000012211	ENSGACG00000012206	ENSGACG00000012205	ENSGACG00000012200 #33	ENSGACG00000012187 #33	ninl (ENSGACG00000012168)	gins1 (ENSGACG00000012166)	abhd12 (ENSGACG00000012160)
Eupecaria_C	ANCESTRAL SPECIES	49				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000155310.a.b	ENSGT00390000011034	ENSGT00910000144630.a	ENSGT00950000183075.a.a.a.a	ENSGT00940000157303.e	ENSGT00940000159658.a.a	ENSGT00940000154815.b.b	ENSGT00940000162367.f	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00950000183147.B	ENSGT00940000153954 #33	ENSGT00940000168290	ENSGT00390000000614 #27	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Gilthead seabream	MODERN SPECIES	6	ENSSAUG00010016482	ENSSAUG00010016484	ENSSAUG00010016486	ENSSAUG00010016488	ENSSAUG00010016554	tspan14 (ENSSAUG00010023039)	ENSSAUG00010023048	KCNG3 (ENSSAUG00010023049)	ENSSAUG00010023050	ENSSAUG00010023051	QKI (ENSSAUG00010023054)	UBR2 (ENSSAUG00010023072)	prph2b (ENSSAUG00010023415)	ENSSAUG00010023416	ncoa4 (ENSSAUG00010023419)	yipf3 (ENSSAUG00010023423) #22	dnph1 (ENSSAUG00010023426) #32	ENSSAUG00010023428	ENSSAUG00010023429	nfkb2 (ENSSAUG00010023432)	PSD (ENSSAUG00010023468)	ENSSAUG00010023712	elovl6l (ENSSAUG00010023715)	AIFM2 (ENSSAUG00010023717)	ninl (ENSSAUG00010023719)	ENSSAUG00010023720	gins1 (ENSSAUG00010023722)	acss1 (ENSSAUG00010023725)	ENSSAUG00010023727	ENSSAUG00010023728	vsx1 (ENSSAUG00010023729)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	58				ENSGT00390000003039	ENSGT00940000158434	ENSGT00940000159235	ENSGT00940000154815.b.b	ENSGT00940000159658.a.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00940000162367.f	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000001216 #32	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000003256 #23	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00950000183147.B	ENSGT00940000153954 #33	ENSGT00940000168290	ENSGT00390000000614 #27	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a
European seabass	MODERN SPECIES	159		ENSDLAG00005029623	ENSDLAG00005013738	ENSDLAG00005017883	ENSDLAG00005027096	ENSDLAG00005028633	ENSDLAG00005027461	ENSDLAG00005033924	ENSDLAG00005026771	ENSDLAG00005028826	ENSDLAG00005027265	ENSDLAG00005014533	ENSDLAG00005034910	ENSDLAG00005019223	ncoa4 (ENSDLAG00005019204)	yipf3 (ENSDLAG00005029699) #22	ENSDLAG00005029291 #32	ENSDLAG00005032869	ENSDLAG00005026380	ENSDLAG00005031153	ENSDLAG00005030669 #25	ENSDLAG00005032278	ENSDLAG00005020168 #23	ENSDLAG00005029419	ENSDLAG00005034134	ENSDLAG00005032648	ENSDLAG00005002963	ENSDLAG00005029760 #27	ENSDLAG00005032921 #33	APMAP (ENSDLAG00005017079)	entpd6 (ENSDLAG00005027027)
Large yellow croaker	MODERN SPECIES	27	vsx1 (ENSLCRG00005018882)	acss1 (ENSLCRG00005018801)	ENSLCRG00005018795	ENSLCRG00005018794	apmap (ENSLCRG00005018792)	EML4 (ENSLCRG00005017526)	tspan14 (ENSLCRG00005017512)	KCNG3 (ENSLCRG00005017511)	prph2b (ENSLCRG00005017510)	UBR2 (ENSLCRG00005015223)	prkn (ENSLCRG00005015190)	QKI (ENSLCRG00005015189)	ENSLCRG00005015188	ENSLCRG00005015187	ncoa4 (ENSLCRG00005015185)	yipf3 (ENSLCRG00005015165) #22	ENSLCRG00005015162	ENSLCRG00005015161 #25	ENSLCRG00005015160	LRRC73 (ENSLCRG00005015158) #23	mea1 (ENSLCRG00005015156)	ppp2r5d (ENSLCRG00005014764)
Cod	MODERN SPECIES	6	zic2b (ENSGMOG00000000151)	ENSGMOG00000000145	tm9sf2 (ENSGMOG00000014604)	ENSGMOG00000012517	ENSGMOG00000012518	ENSGMOG00000008461	ENSGMOG00000002285	ENSGMOG00000029540	ENSGMOG00000026771	prkn (ENSGMOG00000003551)	ENSGMOG00000028673	ENSGMOG00000022579	ENSGMOG00000035953	ENSGMOG00000025515	ncoa4 (ENSGMOG00000034572)	yipf3 (ENSGMOG00000004630) #22	ENSGMOG00000018195 #23	ENSGMOG00000027899	ENSGMOG00000035678	mea1 (ENSGMOG00000018532)	ppp2r5d (ENSGMOG00000018505)	ENSGMOG00000023065 #27	ENSGMOG00000033739	ENSGMOG00000018369 #33	ENSGMOG00000008795	ENSGMOG00000000635	ENSGMOG00000024652	ENSGMOG00000036705	ENSGMOG00000018575	ENSGMOG00000024561	ENSGMOG00000005151
Protacanthopterygii	ANCESTRAL SPECIES	39	ENSGT00940000154815.b.b	ENSGT00390000010899.a.b.b.a	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039	ENSGT00940000158434	ENSGT00390000001205.a	ENSGT00940000157303.e	ENSGT00950000183075.a.a.a.a	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b	ENSGT00940000155965.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00390000001094.z	ENSGT00390000008403	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000172797	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	61	ENSGT00940000159658.b.b.c	ENSGT00940000154815.b.b.e	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039	ENSGT00940000158434.d.b.a.a	ENSGT00940000158434.c	ENSGT00390000001205.a.d	ENSGT00940000157303.e.h	ENSGT00950000183075.a.a.a.a.q	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b.c.b	ENSGT00940000155965.a.b	ENSGT00390000001094.z	ENSGT00390000008403.c	ENSGT00940000153766.A.i #22	ENSGT00390000003256.d #23	ENSGT00940000164045.f	ENSGT00940000160761.b #25	ENSGT00390000001216 #32	ENSGT00390000016927.d	ENSGT01030000234620.a.a.a.b.o	ENSGT00390000000614.c #27	ENSGT00940000168290.b	ENSGT00940000153954.wb #33	ENSGT00950000183147.B.e.b	ENSGT00940000160277.c	ENSGT00440000039984.a.e	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00970000193390.c.b.b.a.l.b.a	ENSGT00970000193390.c.b.b.b.a.v	ENSGT00390000003039.e	ENSGT00940000158434.d.b.a.a	ENSGT00390000003738.b.d.a.c.b	ENSGT00940000158434.c	ENSGT00390000001205.a.d	ENSGT00940000157303.e.h	ENSGT00950000183075.a.a.a.a.q	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b.c.b	ENSGT00940000155965.a.b	ENSGT00390000001094.z	ENSGT00390000008403.c	ENSGT00940000153766.A.i #22	ENSGT00390000003256.d #23	ENSGT00940000164045.f	ENSGT00940000160761.b #25	ENSGT00390000001216 #32	ENSGT00390000016927.d	ENSGT01030000234620.a.a.a.b.o	ENSGT00390000000614.c #27	ENSGT00940000168290.b	ENSGT00940000153954.wb #33	ENSGT00950000183147.B.e.b	ENSGT00940000160277.c	ENSGT00440000039984.a.e	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000154815.b.b.e	ENSGT00390000003039.e	ENSGT00940000158434.d.b.a.a	ENSGT00390000003738.b.d.a.c.b	ENSGT00940000158434.c	ENSGT00390000001205.a.d	ENSGT00940000157303.e.h	ENSGT00950000183075.a.a.a.a.q	ENSGT00910000144630.a.c	ENSGT00390000011034.sc.b	ENSGT00390000011034.sc.a.a	ENSGT00940000155310.a.b.c.b	ENSGT00940000155965.a.b	ENSGT01060000250178	ENSGT00390000008403.c	ENSGT00940000153766.A.i #22	ENSGT00390000003256.d #23	ENSGT00940000164045.f	ENSGT00940000160761.b #25	ENSGT00390000001216 #32	ENSGT00390000016927.d	ENSGT01030000234620.a.a.a.b.o	ENSGT00390000000614.c #27	ENSGT00940000168290.b	ENSGT00940000153954.wb #33	ENSGT00950000183147.B.e.b	ENSGT00940000160277.c	ENSGT00440000039984.a.e	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000158804.g	ENSGT00940000166093.e.a	ENSGT01000000220187	ENSGT00940000154649.A.q	ENSGT00390000003039.e	ENSGT00940000158434.c	ENSGT00390000001205.a.d	ENSGT00940000157303.e.h	ENSGT00950000183075.a.a.a.a.q	ENSGT00910000144630.a.c	ENSGT00390000011034.sc.a.a	ENSGT00940000155310.a.b.c.b	ENSGT00940000155965.a.b	ENSGT01060000250178	ENSGT00390000008403.c	ENSGT00940000153766.A.i #22	ENSGT00390000003256.d #23	ENSGT00940000164045.f	ENSGT00940000160761.b #25	ENSGT00390000001216 #32	ENSGT00390000016927.d	ENSGT01030000234620.a.a.a.b.o	ENSGT00390000000614.c #27	ENSGT00940000168290.b	ENSGT00940000153954.wb #33	ENSGT00950000183147.B.e.b	ENSGT00940000160277.c	ENSGT00440000039984.a.e	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f
Chinook salmon	MODERN SPECIES	30	KCNG3 (ENSOTSG00005020401)	COX7A2L (ENSOTSG00005020402)	ENSOTSG00005020403	ENSOTSG00005020404	ENSOTSG00005020407	EML4 (ENSOTSG00005020413)	pkdcca (ENSOTSG00005023311)	prph2b (ENSOTSG00005023332)	UBR2 (ENSOTSG00005023403)	ENSOTSG00005028091	prkn (ENSOTSG00005028093)	QKI (ENSOTSG00005028098)	ENSOTSG00005028105	ENSOTSG00005028107	ncoa4 (ENSOTSG00005028108)	yipf3 (ENSOTSG00005028110) #22	LRRC73 (ENSOTSG00005028111) #23	ENSOTSG00005028115	DLK2 (ENSOTSG00005028150) #25	dnph1 (ENSOTSG00005028160) #32	mea1 (ENSOTSG00005028161)	ppp2r5d (ENSOTSG00005028181)	ENSOTSG00005031664 #27	ENSOTSG00005031666	ENSOTSG00005031669 #33	SYNDIG1 (ENSOTSG00005031693)	CST7 (ENSOTSG00005031696)	apmap (ENSOTSG00005031698)	acss1 (ENSOTSG00005031722)	vsx1 (ENSOTSG00005031958)	entpd6 (ENSOTSG00005031959)
Coho salmon	MODERN SPECIES	24	ENSOKIG00005000078	ENSOKIG00005000087	ENSOKIG00005000101	EML4 (ENSOKIG00005000244)	ENSOKIG00005000342	pkdcca (ENSOKIG00005000349)	prph2b (ENSOKIG00005000362)	ENSOKIG00005000365	UBR2 (ENSOKIG00005000936)	ENSOKIG00005002657	prkn (ENSOKIG00005002719)	QKI (ENSOKIG00005002819)	ENSOKIG00005002833	ENSOKIG00005002837	ncoa4 (ENSOKIG00005002858)	yipf3 (ENSOKIG00005002897) #22	LRRC73 (ENSOKIG00005002943) #23	ENSOKIG00005002951	DLK2 (ENSOKIG00005002962) #25	dnph1 (ENSOKIG00005002975) #32	mea1 (ENSOKIG00005002986)	ppp2r5d (ENSOKIG00005003028)	ENSOKIG00005003258 #27	ENSOKIG00005003279	ENSOKIG00005003399 #33	SYNDIG1 (ENSOKIG00005003890)	CST7 (ENSOKIG00005003894)	apmap (ENSOKIG00005003908)	acss1 (ENSOKIG00005003938)	ENSOKIG00005003992	vsx1 (ENSOKIG00005003996)
Rainbow trout	MODERN SPECIES		ENSOMYG00000050070	wu:fj16a03 (ENSOMYG00000026703)	EML4 (ENSOMYG00000027209)	ENSOMYG00000028021	pkdcca (ENSOMYG00000028029)	ENSOMYG00000076493	prph2b (ENSOMYG00000028036)	ENSOMYG00000029138	ENSOMYG00000032251	ENSOMYG00000057207	ENSOMYG00000032282	ENSOMYG00000032319	ENSOMYG00000032332	ENSOMYG00000032351	ncoa4 (ENSOMYG00000032388)	yipf3 (ENSOMYG00000032419) #22	ENSOMYG00000032454 #23	ENSOMYG00000032553	DLK2 (ENSOMYG00000032836) #25	dnph1 (ENSOMYG00000032849) #32	mea1 (ENSOMYG00000032857)	ppp2r5d (ENSOMYG00000033264)	ENSOMYG00000075196 #27	ENSOMYG00000034284	ENSOMYG00000034589 #33	ENSOMYG00000069213	SYNDIG1 (ENSOMYG00000035879)	cytf (ENSOMYG00000035889)	APMAP (ENSOMYG00000035908)	ENSOMYG00000069041	ACSS1 (ENSOMYG00000000284)
Salmo	ANCESTRAL SPECIES	29	ENSGT00990000203619.A.b.b.b.a.e.i	ENSGT00940000154815.b.b.f.a.b	ENSGT00940000159658.b.b.c	ENSGT00390000003039.e	ENSGT00940000158434.d.b.a.a	ENSGT00390000003738.b.d.a.c.b	ENSGT00390000001205.a.d	ENSGT00940000157303.e.h	ENSGT00950000183075.a.a.a.a.q	ENSGT00910000144630.a	ENSGT00390000011034	ENSGT00940000155310.a.b.c.b	ENSGT00940000155965.a.b	ENSGT00390000001094.z	ENSGT00390000008403.c	ENSGT00940000153766.A.i #22	ENSGT00390000003256.d #23	ENSGT00940000164045.f	ENSGT00940000160761.b #25	ENSGT00390000001216 #32	ENSGT00390000016927.d	ENSGT01030000234620.a.a.a.b.o	ENSGT00390000000614.c #27	ENSGT00940000153954.wb #33	ENSGT00950000183147.B.e.b	ENSGT00940000160277.c	ENSGT00440000039984.a.e	ENSGT00940000158550	ENSGT00940000160793.a	ENSGT01100000263540.A.a.f	ENSGT00390000018613.a
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000112560	ENSSSAG00000092433	ENSSSAG00000040155	ENSSSAG00000001809	ENSSSAG00000042405	pkdcca (ENSSSAG00000042416)	ENSSSAG00000115091	prph2b (ENSSSAG00000042420)	ENSSSAG00000042694	ENSSSAG00000059761	prkn (ENSSSAG00000059829)	ENSSSAG00000104512	ENSSSAG00000103008	ENSSSAG00000060440	ncoa4 (ENSSSAG00000060369)	yipf3 (ENSSSAG00000060501) #22	lrrc73 (ENSSSAG00000060630) #23	ENSSSAG00000114068	ENSSSAG00000082235	dnph1 (ENSSSAG00000088880) #32	ENSSSAG00000060738 #25	mea1 (ENSSSAG00000105859)	ppp2r5d (ENSSSAG00000104067)	ENSSSAG00000064135	ENSSSAG00000064201 #33	ENSSSAG00000066860	ENSSSAG00000108668	SYNDIG1 (ENSSSAG00000100580)	cst7 (ENSSSAG00000066883)	apmap (ENSSSAG00000066899)	ACS2L (ENSSSAG00000066956)
River trout	MODERN SPECIES	35	KCNG3 (ENSSTUG00000000532)	ENSSTUG00000000529	ENSSTUG00000000521	ENSSTUG00000000518	ENSSTUG00000000515	ENSSTUG00000000360	pkdcca (ENSSTUG00000000338)	prph2b (ENSSTUG00000000327)	UBR2 (ENSSTUG00000000249)	ENSSTUG00000015199	prkn (ENSSTUG00000015138)	QKI (ENSSTUG00000015110)	ENSSTUG00000015102	ENSSTUG00000015061	ncoa4 (ENSSTUG00000015035)	yipf3 (ENSSTUG00000014906) #22	LRRC73 (ENSSTUG00000014884) #23	ENSSTUG00000014877	DLK2 (ENSSTUG00000014856) #25	dnph1 (ENSSTUG00000014832) #32	mea1 (ENSSTUG00000014812)	ppp2r5d (ENSSTUG00000011009)	ENSSTUG00000010904 #27	ENSSTUG00000010014 #33	SYNDIG1 (ENSSTUG00000009973)	CST7 (ENSSTUG00000009955)	apmap (ENSSTUG00000009921)	acss1 (ENSSTUG00000009719)	vsx1 (ENSSTUG00000009691)	entpd6 (ENSSTUG00000009629)	ENSSTUG00000009617
Huchen	MODERN SPECIES	84					EML4 (ENSHHUG00000035368)	pkdcca (ENSHHUG00000035361)	prph2b (ENSHHUG00000035358)	UBR2 (ENSHHUG00000035325)	ENSHHUG00000035310	ENSHHUG00000035307	prkn (ENSHHUG00000035262)	QKI (ENSHHUG00000035243)	ENSHHUG00000035238	ENSHHUG00000035223	ncoa4 (ENSHHUG00000035199)	yipf3 (ENSHHUG00000035164) #22	LRRC73 (ENSHHUG00000035148) #23	ENSHHUG00000035141	DLK2 (ENSHHUG00000035130) #25	dnph1 (ENSHHUG00000035121) #32	mea1 (ENSHHUG00000035117)	ppp2r5d (ENSHHUG00000034977)	ENSHHUG00000034949 #27	ENSHHUG00000034792 #33	SYNDIG1 (ENSHHUG00000034791)	CST7 (ENSHHUG00000034784)	acss1 (ENSHHUG00000034737)	vsx1 (ENSHHUG00000034724)	entpd6 (ENSHHUG00000034722)	ENSHHUG00000034720	pygb (ENSHHUG00000033286)
Salmoninae	ANCESTRAL SPECIES	82												ENSGT00940000155310.a.b.c.a	ENSGT01030000234576.D.a.a.b.b	ENSGT01060000249975	ENSGT00390000008403.d	ENSGT00940000153766.A.j #22	ENSGT00390000003256.c #23	ENSGT00940000164045.e	ENSGT00940000160761.a #25	ENSGT00390000016927.c	ENSGT01030000234620.a.a.a.b.p	ENSGT00390000000614.d #27	ENSGT00940000168290.a	ENSGT00940000172797	ENSGT00940000153954.vb #33	ENSGT00950000183147.B.e.a	ENSGT00940000160277.d	ENSGT00440000039984.a.f	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e
Huchen	MODERN SPECIES	122											QKI (ENSHHUG00000036308)	ENSHHUG00000036304	ENSHHUG00000036238	ncoa4 (ENSHHUG00000036221)	ENSHHUG00000036220	yipf3 (ENSHHUG00000036178) #22	LRRC73 (ENSHHUG00000036163) #23	ENSHHUG00000036153	DLK2 (ENSHHUG00000036147) #25	mea1 (ENSHHUG00000036141)	ppp2r5d (ENSHHUG00000034937)	ENSHHUG00000034918 #27	ENSHHUG00000034908	ENSHHUG00000034903	ENSHHUG00000034867 #33	SYNDIG1 (ENSHHUG00000034857)	CST7 (ENSHHUG00000034852)	apmap (ENSHHUG00000034770)	ENSHHUG00000034749	vsx1 (ENSHHUG00000034739)	entpd6 (ENSHHUG00000034730)
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00940000161584.n	ENSGT00390000013008.g	ENSGT00990000203619.A.b.b.b.a.e.j	ENSGT00940000159658.b.b.d	ENSGT00940000154815.b.b.f.a.a	ENSGT00940000158434.d.a	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c	ENSGT00940000157303.e.g	ENSGT00950000183075.a.a.a.a.r	ENSGT00990000210314	ENSGT00940000155310.a.b.c.a	ENSGT01030000234576.D.a.a.b.b	ENSGT01060000249975	ENSGT00390000008403.d	ENSGT00940000153766.A.j #22	ENSGT00390000003256.c #23	ENSGT00940000164045.e	ENSGT00940000160761.a #25	ENSGT00390000016927.c	ENSGT01030000234620.a.a.a.b.p	ENSGT00390000000614.d #27	ENSGT00940000168290.a	ENSGT00940000153954.vb #33	ENSGT00950000183147.B.e.a	ENSGT00940000160277.d	ENSGT00440000039984.a.f	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT00660000095541.a.a.l
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000159658.b.b.d	ENSGT00940000154815.b.b.f.a.a	ENSGT00940000164656.b.b.a.a.a.a.`b.a	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039.f	ENSGT00940000158434.d.a	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c	ENSGT00940000157303.e.g	ENSGT00950000183075.a.a.a.a.r	ENSGT00990000210314	ENSGT01060000251565	ENSGT00940000155310.a.b.c.a	ENSGT01030000234576.D.a.a.b.b.g	ENSGT00390000008403.d	ENSGT00940000153766.A.j #22	ENSGT00390000003256.c #23	ENSGT00940000164045.e	ENSGT00940000160761.a #25	ENSGT00390000016927.c	ENSGT01030000234620.a.a.a.b.p	ENSGT00390000000614.d #27	ENSGT00940000168290.a	ENSGT00940000153954.vb #33	ENSGT00950000183147.B.e.a	ENSGT00940000160277.d	ENSGT00440000039984.a.f	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e	ENSGT00660000095541.a.a.l
River trout	MODERN SPECIES	9	ENSSTUG00000012547	ENSSTUG00000012553	ENSSTUG00000012561	ENSSTUG00000012570	EML4 (ENSSTUG00000012648)	ENSSTUG00000013848	pkdcca (ENSSTUG00000013852)	prph2b (ENSSTUG00000013857)	UBR2 (ENSSTUG00000013917)	ENSSTUG00000015192	ENSSTUG00000015210	ENSSTUG00000015213	QKI (ENSSTUG00000015221)	ENSSTUG00000015253	ncoa4 (ENSSTUG00000015261)	yipf3 (ENSSTUG00000015288) #22	LRRC73 (ENSSTUG00000015414) #23	ENSSTUG00000024881	DLK2 (ENSSTUG00000024891) #25	mea1 (ENSSTUG00000024902)	ppp2r5d (ENSSTUG00000024928)	ENSSTUG00000025492 #27	ENSSTUG00000025511	ENSSTUG00000025613 #33	SYNDIG1 (ENSSTUG00000028413)	CST7 (ENSSTUG00000028429)	apmap (ENSSTUG00000028444)	ENSSTUG00000028481	vsx1 (ENSSTUG00000028490)	entpd6 (ENSSTUG00000028521)	ENSSTUG00000028578
Atlantic salmon	MODERN SPECIES		ENSSSAG00000001444	ENSSSAG00000001448	EML4 (ENSSSAG00000040250)	ENSSSAG00000027035	ENSSSAG00000028365	pkdcc (ENSSSAG00000028618)	ENSSSAG00000109094	prph2b (ENSSSAG00000104476)	ENSSSAG00000032452	ENSSSAG00000055884	ENSSSAG00000055889	ENSSSAG00000059951	ENSSSAG00000094772	ENSSSAG00000107433	ncoa4 (ENSSSAG00000055914)	yipf3 (ENSSSAG00000055922) #22	ENSSSAG00000121854 #23	ENSSSAG00000091674	DLK2 (ENSSSAG00000106977) #25	mea1 (ENSSSAG00000055949)	ppp2r5d (ENSSSAG00000086741)	ENSSSAG00000100637	ENSSSAG00000112746 #27	ENSSSAG00000109034	ENSSSAG00000059158	ENSSSAG00000059225 #33	ENSSSAG00000062430	apmap (ENSSSAG00000062463)	ENSSSAG00000062552	VSX1 (ENSSSAG00000062565)	enp6 (ENSSSAG00000062635)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00970000193390.c.b.b.a.m	ENSGT00390000003039.f	ENSGT00940000158434.d.b.b	ENSGT00940000158434.d.a	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c	ENSGT00940000157303.e.g	ENSGT00950000183075.a.a.a.a.r	ENSGT00390000011034.sc.a.b	ENSGT00940000155310.a.b.d	ENSGT00990000210314	ENSGT00940000155310.a.b.c.a	ENSGT01030000234576.D.a.a.b.b	ENSGT01060000249975	ENSGT00390000008403.d	ENSGT00940000153766.A.j #22	ENSGT00390000003256.c #23	ENSGT00940000164045.e	ENSGT00940000160761.a #25	ENSGT00390000016927.c	ENSGT01030000234620.a.a.a.b.p	ENSGT00970000196788.I	ENSGT00390000000614.d #27	ENSGT00940000168290.a	ENSGT00940000153954.vb #33	ENSGT00950000183147.B.e.a	ENSGT00940000160277.d	ENSGT00440000039984.a.f	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00990000203619.A.b.b.b.a.e.j	ENSGT00940000159658.b.b.d	ENSGT00940000154815.b.b.f.b	ENSGT00390000003039.f	ENSGT00940000158434.d.b.b	ENSGT01100000263515.a.b.a.b.b.k.b.a.a.e	ENSGT00390000001205.a.c	ENSGT00940000157303.e.g	ENSGT00950000183075.a.a.a.a.r	ENSGT00390000011034.sc.a.b	ENSGT00990000210314	ENSGT00940000155310.a.b.c.a	ENSGT01030000234576.D.a.a.b.b	ENSGT01060000249975	ENSGT00390000008403.d	ENSGT00940000153766.A.j #22	ENSGT00390000003256.c #23	ENSGT00940000164045.e	ENSGT00940000160761.a #25	ENSGT00390000016927.c	ENSGT01030000234620.a.a.a.b.p	ENSGT00970000196788.I	ENSGT00390000000614.d #27	ENSGT00940000168290.a	ENSGT00940000153954.vb #33	ENSGT00950000183147.B.e.a	ENSGT00940000160277.d	ENSGT00440000039984.a.f	ENSGT01100000263520.a.a.a.a.b.b.b	ENSGT00940000160793.b	ENSGT01100000263540.A.a.e
Coho salmon	MODERN SPECIES	2	KCNG3 (ENSOKIG00005004108)	COX7A2L (ENSOKIG00005004104)	ENSOKIG00005004093	ENSOKIG00005004086	EML4 (ENSOKIG00005003765)	ENSOKIG00005003700	pkdcca (ENSOKIG00005003689)	prph2b (ENSOKIG00005003683)	UBR2 (ENSOKIG00005003086)	ENSOKIG00005002803	ENSOKIG00005002790	QKI (ENSOKIG00005002772)	ENSOKIG00005002759	ENSOKIG00005002735	ncoa4 (ENSOKIG00005002717)	yipf3 (ENSOKIG00005002612) #22	LRRC73 (ENSOKIG00005002574) #23	ENSOKIG00005002559	DLK2 (ENSOKIG00005002543) #25	mea1 (ENSOKIG00005002530)	ppp2r5d (ENSOKIG00005002191)	ENSOKIG00005002026	ENSOKIG00005002009 #27	ENSOKIG00005001964	ENSOKIG00005049278 #33	SYNDIG1 (ENSOKIG00005049150)	CST7 (ENSOKIG00005049146)	APMAP (ENSOKIG00005049139)	ENSOKIG00005049138	vsx1 (ENSOKIG00005049133)	entpd6 (ENSOKIG00005049122)
Chinook salmon	MODERN SPECIES		mcfd2 (ENSOTSG00005027862)	haao (ENSOTSG00005027868)	OXER1 (ENSOTSG00005027870)	KCNG3 (ENSOTSG00005027871)	COX7A2L (ENSOTSG00005027872)	ENSOTSG00005027874	EML4 (ENSOTSG00005027887)	ENSOTSG00005028668	pkdcca (ENSOTSG00005028669)	prph2b (ENSOTSG00005028670)	UBR2 (ENSOTSG00005028752)	prkn (ENSOTSG00005037121)	ENSOTSG00005037122	ENSOTSG00005037123	ncoa4 (ENSOTSG00005037124)	yipf3 (ENSOTSG00005000175) #22	LRRC73 (ENSOTSG00005000184) #23	ENSOTSG00005000186	ENSOTSG00005000189	DLK2 (ENSOTSG00005000190) #25	mea1 (ENSOTSG00005000191)	ppp2r5d (ENSOTSG00005000200)	ENSOTSG00005000381	ENSOTSG00005000383 #27	ENSOTSG00005000388	ENSOTSG00005000433 #33	SYNDIG1 (ENSOTSG00005001516)	CST7 (ENSOTSG00005001518)	apmap (ENSOTSG00005001520)	ENSOTSG00005001525	vsx1 (ENSOTSG00005001527)
Rainbow trout	MODERN SPECIES	15	KCNG3 (ENSOMYG00000012443)	ENSOMYG00000012449	ENSOMYG00000012471	ENSOMYG00000012476	EML4 (ENSOMYG00000013339)	ENSOMYG00000064175	ENSOMYG00000064619	pkdcca (ENSOMYG00000025394)	prph2b (ENSOMYG00000025420)	ENSOMYG00000026458	ENSOMYG00000031909	ENSOMYG00000073233	ENSOMYG00000031975	ENSOMYG00000032001	ncoa4 (ENSOMYG00000032024)	yipf3 (ENSOMYG00000032086) #22	ENSOMYG00000032182 #23	ENSOMYG00000032186	DLK2 (ENSOMYG00000032195) #25	ENSOMYG00000048363	mea1 (ENSOMYG00000032200)	ppp2r5d (ENSOMYG00000032657)	ENSOMYG00000035933	ENSOMYG00000056739 #27	ENSOMYG00000039523	ENSOMYG00000063719	ENSOMYG00000036358 #33	SYNDIG1 (ENSOMYG00000039560)	CST7 (ENSOMYG00000039577)	APMAP (ENSOMYG00000039623)	ENSOMYG00000039660
Northern pike	MODERN SPECIES	5	ENSELUG00000024859	EML4 (ENSELUG00000016121)	ENSELUG00000016176	ENSELUG00000000614	ENSELUG00000033040	pkdcca (ENSELUG00000016230)	ENSELUG00000029784	prph2b (ENSELUG00000016256)	UBR2 (ENSELUG00000016522)	ENSELUG00000016617	prkn (ENSELUG00000016662)	QKI (ENSELUG00000016698)	ENSELUG00000016707	ENSELUG00000016738	ncoa4 (ENSELUG00000016764)	yipf3 (ENSELUG00000016794) #22	LRRC73 (ENSELUG00000016819) #23	ENSELUG00000016871	DLK2 (ENSELUG00000016914) #25	dnph1 (ENSELUG00000016938) #32	mea1 (ENSELUG00000016957)	ppp2r5d (ENSELUG00000017007)	ENSELUG00000017055 #27	ENSELUG00000017093	CUL7 (ENSELUG00000017179) #33	SYNDIG1 (ENSELUG00000017206)	cst7 (ENSELUG00000017246)	apmap (ENSELUG00000017302)	ENSELUG00000017463	acss1 (ENSELUG00000017505)	ENSELUG00000032087
Osteoglossiformes	ANCESTRAL SPECIES	46	ENSGT00940000164992.g	ENSGT00940000155061.a.b.l	ENSGT00390000004582	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000166409	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00570000079239	ENSGT00390000013448.a.a	ENSGT00390000002970	ENSGT00950000183100.B #21	ENSGT00940000153766.A #22	ENSGT00390000003256 #23	ENSGT00940000164045	ENSGT00940000160761 #25	ENSGT00390000001216 #32	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b	ENSGT00390000000614 #27	ENSGT00940000168290	ENSGT00940000153954 #33	ENSGT00950000183147.B	ENSGT00940000160277	ENSGT00440000039984.a	ENSGT01100000263520.a.a.a.a.b.b.b.b	ENSGT00940000157865	ENSGT00440000037341.a
P. kingsleyae	MODERN SPECIES	188			ninl (ENSPKIG00000010435)	gins1 (ENSPKIG00000010392)	abhd12 (ENSPKIG00000010364)	pygb (ENSPKIG00000010308)	ENSPKIG00000010258	entpd6 (ENSPKIG00000010184)	vsx1 (ENSPKIG00000010156)	ENSPKIG00000010145	acss1 (ENSPKIG00000010107)	nvl (ENSPKIG00000009967)	degs1 (ENSPKIG00000009914)	fbxo28 (ENSPKIG00000009895)	polr1c (ENSPKIG00000009858) #21	yipf3 (ENSPKIG00000009819) #22	LRRC73 (ENSPKIG00000009786) #23	ENSPKIG00000009733	DLK2 (ENSPKIG00000009706) #25	dnph1 (ENSPKIG00000009695) #32	mea1 (ENSPKIG00000009678)	ppp2r5d (ENSPKIG00000009600)	ENSPKIG00000009562 #27	ENSPKIG00000009537	CUL7 (ENSPKIG00000009345) #33	SYNDIG1 (ENSPKIG00000009263)	ENSPKIG00000009194	apmap (ENSPKIG00000009133)	ENSPKIG00000009111	ENSPKIG00000009072	FAM98A (ENSPKIG00000009038)
Asian bonytongue	MODERN SPECIES	23	nfkb2 (ENSSFOG00015020393)	PSD (ENSSFOG00015020339)	ENSSFOG00015020243	AIFM2 (ENSSFOG00015020205)	ninl (ENSSFOG00015020152)	gins1 (ENSSFOG00015025088)	abhd12 (ENSSFOG00015027870)	pygb (ENSSFOG00015020040)	ENSSFOG00015019993	entpd6 (ENSSFOG00015019960)	vsx1 (ENSSFOG00015019941)	acss1 (ENSSFOG00015019908)	degs1 (ENSSFOG00015026332)	fbxo28 (ENSSFOG00015032127)	polr1c (ENSSFOG00015019860) #21	yipf3 (ENSSFOG00015019808) #22	LRRC73 (ENSSFOG00015019790) #23	ENSSFOG00015019742	DLK2 (ENSSFOG00015033158) #25	dnph1 (ENSSFOG00015019717) #32	mea1 (ENSSFOG00015027564)	ppp2r5d (ENSSFOG00015019640)	ENSSFOG00015019616 #27	ENSSFOG00015019586	CUL7 (ENSSFOG00015019507) #33	ENSSFOG00015024873	SYNDIG1 (ENSSFOG00015031745)	ENSSFOG00015019486	apmap (ENSSFOG00015019473)	ENSSFOG00015019461	ENSSFOG00015019432
Elephant shark	MODERN SPECIES	1546	crls1 (ENSCMIG00000018210)	MCM8 (ENSCMIG00000018196)	trmt6 (ENSCMIG00000018187)	gpcpd1 (ENSCMIG00000018181)	ENSCMIG00000018177	ENSCMIG00000018176	galnt14 (ENSCMIG00000018173)	ENSCMIG00000018171	ENSCMIG00000018167	susd4 (ENSCMIG00000018160)	disp1 (ENSCMIG00000018158)	brox (ENSCMIG00000018134)	aida (ENSCMIG00000018118)	ENSCMIG00000018109	polr1c (ENSCMIG00000018107) #21	yipf3 (ENSCMIG00000018080) #22	glo1 (ENSCMIG00000018070)	ENSCMIG00000018067	ENSCMIG00000018066	ENSCMIG00000018064	ENSCMIG00000018063	soul4 (ENSCMIG00000018061)	ptk7a (ENSCMIG00000018031) #35	srfa (ENSCMIG00000018006) #34	CUL7 (ENSCMIG00000017846) #33	dnph1 (ENSCMIG00000017727) #32	mad2l1bp (ENSCMIG00000017722) #17	DNAH8 (ENSCMIG00000017635)	LRRC73 (ENSCMIG00000017581) #23	ENSCMIG00000017546	DLK2 (ENSCMIG00000017517) #25
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153766.A #22
Lamprey	MODERN SPECIES	29															TRPM2 (ENSPMAG00000001353)	yipf3 (ENSPMAG00000001348) #22	thoc7 (ENSPMAG00000001319)	ENSPMAG00000001318	ENSPMAG00000001313	ENSPMAG00000001306	ENSPMAG00000001288
Hagfish	MODERN SPECIES	969													ENSEBUG00000007183	ENSEBUG00000001114	tpp1 (ENSEBUG00000007691)	yipf3 (ENSEBUG00000007124) #22	ENSEBUG00000001344	ENSEBUG00000012653	ENSEBUG00000016875	ENSEBUG00000003148	lrrc58a (ENSEBUG00000008957)	ENSEBUG00000009698	ENSEBUG00000004657	ENSEBUG00000006057	ENSEBUG00000014555	ENSEBUG00000008706	clvs2 (ENSEBUG00000007331)	snrnp40 (ENSEBUG00000004109)	ENSEBUG00000013305	ENSEBUG00000002441	ube2f (ENSEBUG00000000609)
Ciona	ANCESTRAL SPECIES																	ENSGT00940000153766.A #22
Ciona savignyi	MODERN SPECIES	82	ENSCSAVG00000011430	ENSCSAVG00000011429	ENSCSAVG00000011428	ENSCSAVG00000011427	ENSCSAVG00000011426	ENSCSAVG00000011425	ENSCSAVG00000011424	ENSCSAVG00000011423	ENSCSAVG00000011422	ENSCSAVG00000011421	ENSCSAVG00000011420	ENSCSAVG00000011419	ENSCSAVG00000011418	ENSCSAVG00000011417	ENSCSAVG00000011416	ENSCSAVG00000011415 #22	ENSCSAVG00000011414	ENSCSAVG00000011413	ENSCSAVG00000011412	ENSCSAVG00000011363	ENSCSAVG00000011335	ENSCSAVG00000011333	ENSCSAVG00000011329	ENSCSAVG00000011325	ENSCSAVG00000011324	ENSCSAVG00000011323	ENSCSAVG00000011322	ENSCSAVG00000011321	ENSCSAVG00000011320	ENSCSAVG00000011319	ENSCSAVG00000011316
Ciona intestinalis	MODERN SPECIES	2	ENSCING00000021472	ENSCING00000018337	ENSCING00000018152	ENSCING00000020662	ENSCING00000016946	ENSCING00000023105	ENSCING00000019851	ENSCING00000022358	ENSCING00000019937	ENSCING00000016949	ENSCING00000025087	ENSCING00000023631	ENSCING00000023211	ENSCING00000022939	ENSCING00000023544	ENSCING00000024819 #22	ENSCING00000020738	ENSCING00000019669	ENSCING00000001244	ENSCING00000022947	ENSCING00000022168	ci-zf(c2h2)-148 (ENSCING00000019289)	ENSCING00000020879	ENSCING00000023639	ENSCING00000023774	ENSCING00000001215	ENSCING00000001459	ENSCING00000001458	ENSCING00000021134	ENSCING00000022125	ENSCING00000021752