Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000006663	ENSGT00940000157078 #8	ENSGT00510000048041 #9	ENSGT00940000160887 #10	ENSGT00940000160955 #11	ENSGT01030000234648.a.b.a.a.a #12	ENSGT00730000111329 #14	ENSGT00410000025882.b #15	ENSGT00940000157882 #16	ENSGT00440000034918.q.b.b.d #17	ENSGT00440000034918.q.b.b.c.b.b ##17	ENSGT00950000182973.a.c.a #18	ENSGT00940000157549 #19	ENSGT00490000043415 #20	ENSGT00730000110997.l #21	ENSGT00600000084428.a #22	ENSGT00390000013228.e.a #23	ENSGT00940000155806 #24	ENSGT00940000161869 #25	ENSGT00940000153185.a.a.b #26	ENSGT00940000160911 #27	ENSGT00950000183017.b.b.a.b #28	ENSGT00940000156676 #29	ENSGT00390000000705 #30	ENSGT00390000008767.a.a.a.b #31	ENSGT00950000182956.b.b.b #32	ENSGT00940000158771 #33	ENSGT00940000158726 #34	ENSGT00390000003856 #35	ENSGT00390000011494 #36	ENSGT00390000012644 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT01090000260100.A #7	ENSGT00390000006663	ENSGT00940000157078 #8	ENSGT00510000048041 #9	ENSGT00940000160887 #10	ENSGT00940000160955 #11	ENSGT01030000234648.a.b.a.a.a #12	ENSGT00730000111329 #14	ENSGT00410000025882.b #15	ENSGT00940000157882 #16	ENSGT00440000034918.q.b.b.c.b.b ##17	ENSGT00950000182973.a.c.a #18	ENSGT00940000157549 #19	ENSGT00490000043415 #20	ENSGT00730000110997.l #21	ENSGT00600000084428.a #22	ENSGT00390000013228.e.a #23	ENSGT00940000155806 #24	ENSGT00940000161869 #25	ENSGT00940000153185.a.a.b #26	ENSGT00940000160911 #27	ENSGT00950000183017.b.b.a.b #28	ENSGT00940000156676 #29	ENSGT00390000000705 #30	ENSGT00390000008767.a.a.a.b #31	ENSGT00950000182956.b.b.b #32	ENSGT00940000158771 #33	ENSGT00940000158726 #34	ENSGT00390000003856 #35	ENSGT00390000011494 #36	ENSGT00390000012644 #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT01090000260100.A #7	ENSGT00390000006663	ENSGT00940000157078 #8	ENSGT00510000048041 #9	ENSGT00940000160887 #10	ENSGT00940000160955 #11	ENSGT01030000234648.a.b.a.a.a #12	ENSGT00730000111329 #14	ENSGT00410000025882.b #15	ENSGT00940000157882 #16	ENSGT00440000034918.q.b.b.d #17	ENSGT00950000182973.a.c.a #18	ENSGT00940000157549 #19	ENSGT00490000043415 #20	ENSGT00730000110997.l #21	ENSGT00600000084428.a #22	ENSGT00390000013228.e.a #23	ENSGT00940000155806 #24	ENSGT00940000161869 #25	ENSGT00940000153185.a.a.b #26	ENSGT00940000160911 #27	ENSGT00950000183017.b.b.a.b #28	ENSGT00940000156676 #29	ENSGT00390000000705 #30	ENSGT00390000008767.a.a.a.b #31	ENSGT00950000182956.b.b.b #32	ENSGT00940000158771 #33	ENSGT00940000158726 #34	ENSGT00390000003856 #35	ENSGT00390000011494 #36	ENSGT00390000012644 #37
spretus	MODERN SPECIES	8	Bak1 (MGP_SPRETEiJ_G0022207) #7	Itpr3 (MGP_SPRETEiJ_G0022208) #8	Uqcc2 (MGP_SPRETEiJ_G0022209) #9	Ip6k3 (MGP_SPRETEiJ_G0022210) #10	Lemd2 (MGP_SPRETEiJ_G0022211) #11	Grm4 (MGP_SPRETEiJ_G0022212) #12	MGP_SPRETEiJ_G0022213 #13	MGP_SPRETEiJ_G0022214 #14	Smim29 (MGP_SPRETEiJ_G0022215) #15	Nudt3 (MGP_SPRETEiJ_G0022216) #16	Rps10 (MGP_SPRETEiJ_G0022217) #17	Pacsin1 (MGP_SPRETEiJ_G0022218) #18	Spdef (MGP_SPRETEiJ_G0022219) #19	Ilrun (MGP_SPRETEiJ_G0022220) #20	MGP_SPRETEiJ_G0022221 #21	Uhrf1bp1 (MGP_SPRETEiJ_G0022222) #22	Taf11 (MGP_SPRETEiJ_G0022223) #23	Anks1 (MGP_SPRETEiJ_G0022224) #24	Tcp11 (MGP_SPRETEiJ_G0022225) #25	Scube3 (MGP_SPRETEiJ_G0022226) #26	Zfp523 (MGP_SPRETEiJ_G0022227) #27	Def6 (MGP_SPRETEiJ_G0022228) #28	MGP_SPRETEiJ_G0022229 #29	MGP_SPRETEiJ_G0022230 #30	Rpl10a (MGP_SPRETEiJ_G0022231) #31	Tead3 (MGP_SPRETEiJ_G0022232) #32	Tulp1 (MGP_SPRETEiJ_G0022233) #33	Fkbp5 (MGP_SPRETEiJ_G0022234) #34	Armc12 (MGP_SPRETEiJ_G0022235) #35	Clpsl2 (MGP_SPRETEiJ_G0022236) #36	Clps (MGP_SPRETEiJ_G0022237) #37
Steppe mouse	MODERN SPECIES	3360	Bak1 (ENSMSIG00000004848) #7	Itpr3 (ENSMSIG00000004883) #8	Uqcc2 (ENSMSIG00000005071) #9	Ip6k3 (ENSMSIG00000005125) #10	Lemd2 (ENSMSIG00000005161) #11	Grm4 (ENSMSIG00000005245) #12	ENSMSIG00000005358	ENSMSIG00000005670	Smim29 (ENSMSIG00000005684) #15	ENSMSIG00000005759 #16	ENSMSIG00000005933 ##17	Pacsin1 (ENSMSIG00000006080) #18	Spdef (ENSMSIG00000006129) #19	Ilrun (ENSMSIG00000006231) #20	Snrpc (ENSMSIG00000006356) #21	Uhrf1bp1 (ENSMSIG00000006462) #22	Taf11 (ENSMSIG00000006531) #23	Anks1 (ENSMSIG00000006570) #24	Tcp11 (ENSMSIG00000007312) #25	Scube3 (ENSMSIG00000007550) #26	Zfp523 (ENSMSIG00000007823) #27	Def6 (ENSMSIG00000007926) #28	ENSMSIG00000007962 #29	Fance (ENSMSIG00000008000) #30	Rpl10a (ENSMSIG00000008210) #31	Tead3 (ENSMSIG00000008386) #32	Tulp1 (ENSMSIG00000008568) #33	Fkbp5 (ENSMSIG00000008809) #34	Armc12 (ENSMSIG00000008938) #35	Clpsl2 (ENSMSIG00000009026) #36	Clps (ENSMSIG00000009048) #37
Mouse	MODERN SPECIES	8	Bak1 (ENSMUSG00000057789) #7	Itpr3 (ENSMUSG00000042644) #8	Uqcc2 (ENSMUSG00000024208) #9	Ip6k3 (ENSMUSG00000024210) #10	Lemd2 (ENSMUSG00000044857) #11	Grm4 (ENSMUSG00000063239) #12	Hmga1 (ENSMUSG00000046711) #14	Smim29 (ENSMUSG00000062753) #15	Nudt3 (ENSMUSG00000024213) #16	Gm49804 (ENSMUSG00000117338)	Rps10 (ENSMUSG00000052146) ##17	Pacsin1 (ENSMUSG00000040276) #18	Spdef (ENSMUSG00000024215) #19	Ilrun (ENSMUSG00000056692) #20	Snrpc (ENSMUSG00000024217) #21	Uhrf1bp1 (ENSMUSG00000039512) #22	Taf11 (ENSMUSG00000024218) #23	Anks1 (ENSMUSG00000024219) #24	Tcp11 (ENSMUSG00000062859) #25	Scube3 (ENSMUSG00000038677) #26	Zfp523 (ENSMUSG00000024220) #27	Def6 (ENSMUSG00000002257) #28	Ppard (ENSMUSG00000002250) #29	Fance (ENSMUSG00000007570) #30	Rpl10a (ENSMUSG00000037805) #31	Tead3 (ENSMUSG00000002249) #32	Tulp1 (ENSMUSG00000037446) #33	Fkbp5 (ENSMUSG00000024222) #34	Armc12 (ENSMUSG00000024223) #35	Clpsl2 (ENSMUSG00000024224) #36	Clps (ENSMUSG00000024225) #37
Ryukyu mouse	MODERN SPECIES	8	Bak1 (MGP_CAROLIEiJ_G0021294) #7	Itpr3 (MGP_CAROLIEiJ_G0021295) #8	Uqcc2 (MGP_CAROLIEiJ_G0021296) #9	Ip6k3 (MGP_CAROLIEiJ_G0021297) #10	Lemd2 (MGP_CAROLIEiJ_G0021298) #11	Grm4 (MGP_CAROLIEiJ_G0021299) #12	MGP_CAROLIEiJ_G0021300 #14	MGP_CAROLIEiJ_G0021301 #14	Smim29 (MGP_CAROLIEiJ_G0021302) #15	Nudt3 (MGP_CAROLIEiJ_G0021303) #16	Rps10 (MGP_CAROLIEiJ_G0021304) #17	Pacsin1 (MGP_CAROLIEiJ_G0021305) #18	Spdef (MGP_CAROLIEiJ_G0021306) #19	Ilrun (MGP_CAROLIEiJ_G0021307) #20	Snrpc (MGP_CAROLIEiJ_G0021308) #21	Uhrf1bp1 (MGP_CAROLIEiJ_G0021309) #22	Taf11 (MGP_CAROLIEiJ_G0021310) #23	Anks1 (MGP_CAROLIEiJ_G0021311) #24	Tcp11 (MGP_CAROLIEiJ_G0021312) #25	Scube3 (MGP_CAROLIEiJ_G0021313) #26	Zfp523 (MGP_CAROLIEiJ_G0021314) #27	Def6 (MGP_CAROLIEiJ_G0021315) #28	Ppard (MGP_CAROLIEiJ_G0021316) #29	MGP_CAROLIEiJ_G0021317 #30	Rpl10a (MGP_CAROLIEiJ_G0021318) #31	Tead3 (MGP_CAROLIEiJ_G0021319) #32	Tulp1 (MGP_CAROLIEiJ_G0021320) #33	Fkbp5 (MGP_CAROLIEiJ_G0021321) #34	MGP_CAROLIEiJ_G0021322 #35	Clpsl2 (MGP_CAROLIEiJ_G0021323) #36	Clps (MGP_CAROLIEiJ_G0021324) #37