Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES	429																ENSGT00510000046787.e.b #22	ENSGT00390000017018.b
Gnathostomata	ANCESTRAL SPECIES	304										ENSGT00940000166827	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000156583 #24	ENSGT00940000158507 #23	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047 #19	ENSGT00390000017018.b
Euteleostomi	ANCESTRAL SPECIES	43	ENSGT00950000183027.a.a #37	ENSGT00390000002792 #36	ENSGT00390000006954 #35	ENSGT00390000007586.b	ENSGT00950000185412	ENSGT00940000165034	ENSGT00510000046908.a.a.a #30	ENSGT00940000158770 #29	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000156583 #24	ENSGT00940000165176	ENSGT00940000158507 #23	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047 #19	ENSGT00390000017018.b	ENSGT00390000011365.b ##20	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b
Sarcopterygii	ANCESTRAL SPECIES	41	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000154593.a.a	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00390000007586.b	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Tetrapoda	ANCESTRAL SPECIES	27	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000007586.b	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Amniota	ANCESTRAL SPECIES	17	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000161098	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Mammalia	ANCESTRAL SPECIES	30	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000161098	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Theria	ANCESTRAL SPECIES	18	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00950000183007.a.b.g.a.b.b ##33	ENSGT00950000183007.a.b.g.a.a ##33	ENSGT01100000263517.b.d.m.a.b
Primates	ANCESTRAL SPECIES	8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00910000148764	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00910000148764	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00910000148764	ENSGT00940000163712	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00910000148764	ENSGT00940000163712	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00910000148764	ENSGT00940000163712	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Human	MODERN SPECIES	17	MRPL22 (ENSG00000082515) #7	GEMIN5 (ENSG00000082516) #8	CNOT8 (ENSG00000155508) #9	FAXDC2 (ENSG00000170271) #10	LARP1 (ENSG00000155506) #11	HAND1 (ENSG00000113196) #12	SAP30L (ENSG00000164576) #13	GALNT10 (ENSG00000164574) #14	MFAP3 (ENSG00000037749) #15	FAM114A2 (ENSG00000055147) #16	GRIA1 (ENSG00000155511) #17	NMUR2 (ENSG00000132911) #18	GLRA1 (ENSG00000145888) #19	G3BP1 (ENSG00000145907) #20	ATOX1 (ENSG00000177556) #21	SPARC (ENSG00000113140) #22	FAT2 (ENSG00000086570) #23	SLC36A1 (ENSG00000123643) #24	SLC36A2 (ENSG00000186335) #25	SLC36A3 (ENSG00000186334) #26	GM2A (ENSG00000196743) #27	CCDC69 (ENSG00000198624) #28	ANXA6 (ENSG00000197043) #29	TNIP1 (ENSG00000145901) #30	GPX3 (ENSG00000211445) #31	ZNF300 (ENSG00000145908) #32	IRGM (ENSG00000237693) #33	SMIM3 (ENSG00000256235) #34	DCTN4 (ENSG00000132912) #35	RBM22 (ENSG00000086589) #36	MYOZ3 (ENSG00000164591) #37
Pan	ANCESTRAL SPECIES	10	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00910000148764	ENSGT00940000163712	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Bonobo	MODERN SPECIES	18	CNOT8 (ENSPPAG00000043672) #9	FAXDC2 (ENSPPAG00000039494) #10	LARP1 (ENSPPAG00000042993) #11	ENSPPAG00000034808	HAND1 (ENSPPAG00000032868) #12	SAP30L (ENSPPAG00000037666) #13	GALNT10 (ENSPPAG00000017325) #14	MFAP3 (ENSPPAG00000043694) #15	FAM114A2 (ENSPPAG00000026356) #16	GRIA1 (ENSPPAG00000028550) #17	NMUR2 (ENSPPAG00000026509) #18	GLRA1 (ENSPPAG00000042329) #19	G3BP1 (ENSPPAG00000027573) #20	ENSPPAG00000034828	ATOX1 (ENSPPAG00000042315) #21	SPARC (ENSPPAG00000040370) #22	FAT2 (ENSPPAG00000035661) #23	SLC36A1 (ENSPPAG00000035415) #24	SLC36A2 (ENSPPAG00000030952) #25	SLC36A3 (ENSPPAG00000038247) #26	GM2A (ENSPPAG00000037388) #27	ANXA6 (ENSPPAG00000031897) #29	TNIP1 (ENSPPAG00000025830) #30	ENSPPAG00000032371 #31	ZNF300 (ENSPPAG00000031459) #32	IRGM (ENSPPAG00000030526) #33	ENSPPAG00000013008	SMIM3 (ENSPPAG00000019792) #34	ENSPPAG00000020339	DCTN4 (ENSPPAG00000037460) #35	RBM22 (ENSPPAG00000034432) #36
Chimpanzee	MODERN SPECIES	18	LARP1 (ENSPTRG00000017447) #11	ENSPTRG00000045130	HAND1 (ENSPTRG00000017446) #12	SAP30L (ENSPTRG00000017445) #13	GALNT10 (ENSPTRG00000017444) #14	MFAP3 (ENSPTRG00000017443) #15	FAM114A2 (ENSPTRG00000017442) #16	GRIA1 (ENSPTRG00000017441) #17	NMUR2 (ENSPTRG00000017440) #18	GLRA1 (ENSPTRG00000017439) #19	G3BP1 (ENSPTRG00000017438) #20	ENSPTRG00000043195	ENSPTRG00000046428	ATOX1 (ENSPTRG00000017437) #21	ENSPTRG00000043099	SPARC (ENSPTRG00000017436) #22	FAT2 (ENSPTRG00000017435) #23	SLC36A1 (ENSPTRG00000017434) #24	SLC36A2 (ENSPTRG00000017433) #25	SLC36A3 (ENSPTRG00000017432) #26	GM2A (ENSPTRG00000017431) #27	ANXA6 (ENSPTRG00000047021) #29	TNIP1 (ENSPTRG00000017428) #30	GPX3 (ENSPTRG00000017427) #31	ZNF300 (ENSPTRG00000017426) #32	IRGM (ENSPTRG00000040838) #33	ENSPTRG00000052500	SMIM3 (ENSPTRG00000042157) #34	ENSPTRG00000045327	DCTN4 (ENSPTRG00000017424) #35	RBM22 (ENSPTRG00000017423) #36
Gorilla	MODERN SPECIES	18	FAXDC2 (ENSGGOG00000006063) #10	LARP1 (ENSGGOG00000006048) #11	ENSGGOG00000043297	HAND1 (ENSGGOG00000004311) #12	SAP30L (ENSGGOG00000004441) #13	GALNT10 (ENSGGOG00000014438) #14	MFAP3 (ENSGGOG00000011060) #15	ENSGGOG00000007198 #16	GRIA1 (ENSGGOG00000014845) #17	NMUR2 (ENSGGOG00000006717) #18	GLRA1 (ENSGGOG00000014389) #19	G3BP1 (ENSGGOG00000022952) #20	ENSGGOG00000038918	ENSGGOG00000026958	ATOX1 (ENSGGOG00000008760) #21	SPARC (ENSGGOG00000016149) #22	FAT2 (ENSGGOG00000006362) #23	SLC36A1 (ENSGGOG00000006356) #24	SLC36A2 (ENSGGOG00000038419) #25	SLC36A3 (ENSGGOG00000004915) #26	GM2A (ENSGGOG00000015302) #27	CCDC69 (ENSGGOG00000006494) #28	ANXA6 (ENSGGOG00000005109) #29	TNIP1 (ENSGGOG00000000891) #30	GPX3 (ENSGGOG00000000889) #31	ZNF300 (ENSGGOG00000008304) #32	IRGM (ENSGGOG00000022924) #33	ENSGGOG00000039248	SMIM3 (ENSGGOG00000041128) #34	ENSGGOG00000043071	DCTN4 (ENSGGOG00000009813) #35
Orangutan	MODERN SPECIES	18	GEMIN5 (ENSPPYG00000015978) #8	CNOT8 (ENSPPYG00000015977) #9	FAXDC2 (ENSPPYG00000015976) #10	LARP1 (ENSPPYG00000036339) #11	HAND1 (ENSPPYG00000015975) #12	SAP30L (ENSPPYG00000015974) #13	GALNT10 (ENSPPYG00000015973) #14	MFAP3 (ENSPPYG00000015972) #15	FAM114A2 (ENSPPYG00000015971) #16	GRIA1 (ENSPPYG00000015970) #17	NMUR2 (ENSPPYG00000031597) #18	GLRA1 (ENSPPYG00000015969) #19	G3BP1 (ENSPPYG00000015968) #20	ENSPPYG00000030979	ENSPPYG00000034727 #21	SPARC (ENSPPYG00000030691) #22	FAT2 (ENSPPYG00000015966) #23	SLC36A1 (ENSPPYG00000015965) #24	SLC36A2 (ENSPPYG00000015964) #25	SLC36A3 (ENSPPYG00000015963) #26	GM2A (ENSPPYG00000015962) #27	CCDC69 (ENSPPYG00000015961) #28	ANXA6 (ENSPPYG00000015960) #29	ENSPPYG00000015959 #30	GPX3 (ENSPPYG00000015958) #31	ENSPPYG00000030333 #32	ZNF300 (ENSPPYG00000015957) #32	DCTN4 (ENSPPYG00000036615) #35	RBM22 (ENSPPYG00000015955) #36	MYOZ3 (ENSPPYG00000015953) #37	SYNPO (ENSPPYG00000015952)
Gibbon	MODERN SPECIES	11	FAXDC2 (ENSNLEG00000016609) #10	LARP1 (ENSNLEG00000016588) #11	ENSNLEG00000031190	HAND1 (ENSNLEG00000016584) #12	SAP30L (ENSNLEG00000016582) #13	GALNT10 (ENSNLEG00000016565) #14	MFAP3 (ENSNLEG00000035100) #15	FAM114A2 (ENSNLEG00000016540) #16	GRIA1 (ENSNLEG00000016504) #17	NMUR2 (ENSNLEG00000016499) #18	GLRA1 (ENSNLEG00000016483) #19	ENSNLEG00000027671	G3BP1 (ENSNLEG00000027246) #20	ENSNLEG00000036070	ATOX1 (ENSNLEG00000016467) #21	SPARC (ENSNLEG00000016420) #22	FAT2 (ENSNLEG00000011039) #23	SLC36A2 (ENSNLEG00000011003) #25	SLC36A3 (ENSNLEG00000010981) #26	GM2A (ENSNLEG00000034956) #27	CCDC69 (ENSNLEG00000033034) #28	ANXA6 (ENSNLEG00000010757) #29	TNIP1 (ENSNLEG00000010529) #30	GPX3 (ENSNLEG00000031591) #31	ZNF300 (ENSNLEG00000010439) #32	ENSNLEG00000032698	SMIM3 (ENSNLEG00000018481) #34	ENSNLEG00000036335	DCTN4 (ENSNLEG00000010410) #35	ENSNLEG00000010397 #36	MYOZ3 (ENSNLEG00000010386) #37
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00910000148764	ENSGT00940000162517.k #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00910000148764	ENSGT00940000162517.k #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Vervet Monkey	MODERN SPECIES	15	MRPL22 (ENSCSAG00000010752) #7	GEMIN5 (ENSCSAG00000010767) #8	CNOT8 (ENSCSAG00000010779) #9	FAXDC2 (ENSCSAG00000010785) #10	LARP1 (ENSCSAG00000010800) #11	HAND1 (ENSCSAG00000010805) #12	SAP30L (ENSCSAG00000010808) #13	GALNT10 (ENSCSAG00000010818) #14	MFAP3 (ENSCSAG00000010825) #15	FAM114A2 (ENSCSAG00000010839) #16	GRIA1 (ENSCSAG00000010848) #17	NMUR2 (ENSCSAG00000010855) #18	GLRA1 (ENSCSAG00000010864) #19	G3BP1 (ENSCSAG00000010876) #20	ENSCSAG00000010885 #21	SPARC (ENSCSAG00000010892) #22	FAT2 (ENSCSAG00000010900) #23	SLC36A1 (ENSCSAG00000010911) #24	SLC36A2 (ENSCSAG00000010922) #25	SLC36A3 (ENSCSAG00000010946) #26	GM2A (ENSCSAG00000010976) #27	CCDC69 (ENSCSAG00000010986) #28	ANXA6 (ENSCSAG00000011217) #29	TNIP1 (ENSCSAG00000011301) #30	ZNF300 (ENSCSAG00000011310) #32	SMIM3 (ENSCSAG00000019719) #34	ENSCSAG00000011322	ENSCSAG00000011379 #35	MYOZ3 (ENSCSAG00000011410) #37	SYNPO (ENSCSAG00000011415)	NDST1 (ENSCSAG00000011472)
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00910000148764	ENSGT00940000162517.k #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Macaca	ANCESTRAL SPECIES	7	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.l #21	ENSGT00910000148764	ENSGT00940000162517.k #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT01100000263539.b.a.a.a.a.b.a.b.a.a.b	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00910000148764	ENSGT00940000162517.k #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00390000000703.h.h.b
Rhesus	MODERN SPECIES	16	ENSMMUG00000045056	ENSMMUG00000057932	HAND1 (ENSMMUG00000010621) #12	SAP30L (ENSMMUG00000056369) #13	ENSMMUG00000063477	GALNT10 (ENSMMUG00000010615) #14	MFAP3 (ENSMMUG00000011989) #15	FAM114A2 (ENSMMUG00000011988) #16	GRIA1 (ENSMMUG00000009287) #17	NMUR2 (ENSMMUG00000013880) #18	ENSMMUG00000061338	ENSMMUG00000029761	GLRA1 (ENSMMUG00000014704) #19	G3BP1 (ENSMMUG00000014701) #20	ATOX1 (ENSMMUG00000054302) #21	SPARC (ENSMMUG00000053367) #22	FAT2 (ENSMMUG00000003497) #23	SLC36A1 (ENSMMUG00000003499) #24	SLC36A2 (ENSMMUG00000005567) #25	SLC36A3 (ENSMMUG00000022870) #26	GM2A (ENSMMUG00000022869) #27	CCDC69 (ENSMMUG00000050884) #28	ANXA6 (ENSMMUG00000021053) #29	ENSMMUG00000053139	TNIP1 (ENSMMUG00000021051) #30	GPX3 (ENSMMUG00000042643) #31	ZNF300 (ENSMMUG00000012696) #32	ENSMMUG00000057434	DCTN4 (ENSMMUG00000019764) #35	RBM22 (ENSMMUG00000020683) #36	MYOZ3 (ENSMMUG00000020679) #37
Crab-eating macaque	MODERN SPECIES	16	ENSMFAG00000054032	LARP1 (ENSMFAG00000031651) #11	ENSMFAG00000064816	HAND1 (ENSMFAG00000000456) #12	ENSMFAG00000059801 #13	GALNT10 (ENSMFAG00000035971) #14	MFAP3 (ENSMFAG00000002609) #15	FAM114A2 (ENSMFAG00000043590) #16	GRIA1 (ENSMFAG00000043353) #17	NMUR2 (ENSMFAG00000043345) #18	ENSMFAG00000063206	GLRA1 (ENSMFAG00000033181) #19	G3BP1 (ENSMFAG00000036965) #20	ENSMFAG00000052929	ATOX1 (ENSMFAG00000050498) #21	SPARC (ENSMFAG00000038613) #22	FAT2 (ENSMFAG00000039681) #23	SLC36A1 (ENSMFAG00000010715) #24	SLC36A2 (ENSMFAG00000046152) #25	SLC36A3 (ENSMFAG00000003733) #26	ENSMFAG00000047173	GM2A (ENSMFAG00000032758) #27	CCDC69 (ENSMFAG00000029997) #28	ANXA6 (ENSMFAG00000037015) #29	TNIP1 (ENSMFAG00000030366) #30	ENSMFAG00000061550 #31	ZNF300 (ENSMFAG00000041051) #32	DCTN4 (ENSMFAG00000037111) #35	RBM22 (ENSMFAG00000004034) #36	MYOZ3 (ENSMFAG00000035709) #37	SYNPO (ENSMFAG00000031848)
Pig-tailed macaque	MODERN SPECIES	383											NMUR2 (ENSMNEG00000028673) #18	GLRA1 (ENSMNEG00000034655) #19	ENSMNEG00000003877	G3BP1 (ENSMNEG00000021253) #20	ATOX1 (ENSMNEG00000039738) #21	SPARC (ENSMNEG00000014038) #22	FAT2 (ENSMNEG00000045400) #23	SLC36A1 (ENSMNEG00000029317) #24	SLC36A2 (ENSMNEG00000032236) #25	SLC36A3 (ENSMNEG00000029091) #26	GM2A (ENSMNEG00000030396) #27	CCDC69 (ENSMNEG00000044666) #28	ANXA6 (ENSMNEG00000035257) #29	TNIP1 (ENSMNEG00000022961) #30	GPX3 (ENSMNEG00000030683) #31	ZNF300 (ENSMNEG00000037153) #32	IRGM (ENSMNEG00000035125) #33	ENSMNEG00000003762	SMIM3 (ENSMNEG00000009006) #34	ENSMNEG00000035752	DCTN4 (ENSMNEG00000033395) #35
Cercopithecinae_b	DUPLICATION
Cercopithecinae_b	DUPLICATION
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00390000010047.b.o	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00390000011365.a #20	ENSGT00940000162517.l #21	ENSGT00510000046787.e.b.c.a #22	ENSGT00940000162517.k.b #21	ENSGT00510000046787.e.b.c.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34
Olive baboon	MODERN SPECIES	148																ENSPANG00000038467 #22
Cercopithecinae_d	ANCESTRAL SPECIES	90	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT00910000147387	ENSGT01100000263484.A.d #18	ENSGT00390000010047.b.o	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00390000011365.a #20	ENSGT00940000162517.l #21	ENSGT00510000046787.e.b.c.a #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Drill	MODERN SPECIES	921												GLRA1 (ENSMLEG00000038021) #19	ENSMLEG00000042346	G3BP1 (ENSMLEG00000032036) #20	ENSMLEG00000029418 #21	SPARC (ENSMLEG00000029267) #22	FAT2 (ENSMLEG00000032800) #23	SLC36A1 (ENSMLEG00000040481) #24	SLC36A2 (ENSMLEG00000004879) #25	SLC36A3 (ENSMLEG00000036664) #26	GM2A (ENSMLEG00000017264) #27	CCDC69 (ENSMLEG00000032570) #28	ANXA6 (ENSMLEG00000035615) #29	TNIP1 (ENSMLEG00000026506) #30	GPX3 (ENSMLEG00000006710) #31	ZNF300 (ENSMLEG00000041975) #32	IRGM (ENSMLEG00000016871) #33	ENSMLEG00000043390	SMIM3 (ENSMLEG00000003176) #34	DCTN4 (ENSMLEG00000043609) #35	RBM22 (ENSMLEG00000034825) #36
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00390000010047.b.o	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00390000011365.a #20	ENSGT00940000162517.l #21	ENSGT00510000046787.e.b.c.a #22	ENSGT00940000162517.k.b #21	ENSGT00510000046787.e.b.c.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Olive baboon	MODERN SPECIES	15	ENSPANG00000050331	ENSPANG00000047695	HAND1 (ENSPANG00000046299) #12	SAP30L (ENSPANG00000005222) #13	GALNT10 (ENSPANG00000013928) #14	ENSPANG00000017611	MFAP3 (ENSPANG00000047235) #15	FAM114A2 (ENSPANG00000006589) #16	ENSPANG00000047451	GRIA1 (ENSPANG00000017117) #17	NMUR2 (ENSPANG00000002471) #18	ENSPANG00000029435	GLRA1 (ENSPANG00000007038) #19	G3BP1 (ENSPANG00000017662) #20	ENSPANG00000003198 #21	ENSPANG00000008874 #22	FAT2 (ENSPANG00000003561) #23	SLC36A1 (ENSPANG00000009511) #24	SLC36A2 (ENSPANG00000023734) #25	SLC36A3 (ENSPANG00000016764) #26	GM2A (ENSPANG00000003592) #27	CCDC69 (ENSPANG00000016192) #28	ANXA6 (ENSPANG00000013721) #29	GPX3 (ENSPANG00000034534) #31	TNIP1 (ENSPANG00000010161) #30	ZNF300 (ENSPANG00000026071) #32	SMIM3 (ENSPANG00000029980) #34	ENSPANG00000048468	DCTN4 (ENSPANG00000020110) #35	RBM22 (ENSPANG00000011297) #36	MYOZ3 (ENSPANG00000007889) #37
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00510000046787.e.b.d #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00510000046787.e.b.d #22
Sooty mangabey	MODERN SPECIES	150	FAXDC2 (ENSCATG00000027891) #10	ENSCATG00000021010	LARP1 (ENSCATG00000030675) #11	HAND1 (ENSCATG00000033921) #12	SAP30L (ENSCATG00000037026) #13	GALNT10 (ENSCATG00000021578) #14	MFAP3 (ENSCATG00000045176) #15	FAM114A2 (ENSCATG00000034701) #16	GRIA1 (ENSCATG00000038910) #17	ENSCATG00000036023	NMUR2 (ENSCATG00000010286) #18	ENSCATG00000034503	GLRA1 (ENSCATG00000037389) #19	G3BP1 (ENSCATG00000018373) #20	ENSCATG00000041465	SPARC (ENSCATG00000031975) #22	FAT2 (ENSCATG00000044962) #23	SLC36A1 (ENSCATG00000034672) #24	SLC36A2 (ENSCATG00000025179) #25	SLC36A3 (ENSCATG00000034422) #26	GM2A (ENSCATG00000041023) #27	CCDC69 (ENSCATG00000040897) #28	ANXA6 (ENSCATG00000042117) #29	TNIP1 (ENSCATG00000042774) #30	GPX3 (ENSCATG00000013573) #31	ZNF300 (ENSCATG00000006978) #32	IRGM (ENSCATG00000041689) #33	ENSCATG00000041536	SMIM3 (ENSCATG00000017533) #34	DCTN4 (ENSCATG00000044915) #35	RBM22 (ENSCATG00000042133) #36
Rhinopithecus	ANCESTRAL SPECIES	53	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00730000111135.h	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00390000011365.a #20	ENSGT00940000162517.l #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Black snub-nosed monkey	MODERN SPECIES	531	CNOT8 (ENSRBIG00000036678) #9	FAXDC2 (ENSRBIG00000026691) #10	LARP1 (ENSRBIG00000038005) #11	ENSRBIG00000039741	HAND1 (ENSRBIG00000030949) #12	SAP30L (ENSRBIG00000040566) #13	GALNT10 (ENSRBIG00000042569) #14	MFAP3 (ENSRBIG00000037406) #15	FAM114A2 (ENSRBIG00000040474) #16	GRIA1 (ENSRBIG00000040984) #17	NMUR2 (ENSRBIG00000035659) #18	GLRA1 (ENSRBIG00000032053) #19	ENSRBIG00000033185	G3BP1 (ENSRBIG00000042268) #20	ATOX1 (ENSRBIG00000033555) #21	SPARC (ENSRBIG00000043589) #22	FAT2 (ENSRBIG00000038121) #23	SLC36A1 (ENSRBIG00000039053) #24	SLC36A2 (ENSRBIG00000044519) #25	SLC36A3 (ENSRBIG00000030720) #26	GM2A (ENSRBIG00000044207) #27	CCDC69 (ENSRBIG00000026946) #28	ANXA6 (ENSRBIG00000041548) #29	TNIP1 (ENSRBIG00000027176) #30	GPX3 (ENSRBIG00000044997) #31	ZNF300 (ENSRBIG00000044234) #32	IRGM (ENSRBIG00000042496) #33	ENSRBIG00000012227	SMIM3 (ENSRBIG00000016271) #34	ENSRBIG00000031732 #35	RBM22 (ENSRBIG00000041683) #36
Golden snub-nosed monkey	MODERN SPECIES	3296											NMUR2 (ENSRROG00000030463) #18	GLRA1 (ENSRROG00000015315) #19	ENSRROG00000043687	G3BP1 (ENSRROG00000030118) #20	ENSRROG00000035368 #21	SPARC (ENSRROG00000033362) #22	FAT2 (ENSRROG00000036572) #23
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000010047.a.b.a.b	ENSGT00390000011365.a #20	ENSGT00940000162517.j #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Cebidae	ANCESTRAL SPECIES	6	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.j #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Marmoset	MODERN SPECIES	11	CNOT8 (ENSCJAG00000007417) #9	HAND1 (ENSCJAG00000078853) #12	SAP30L (ENSCJAG00000042193) #13	GALNT10 (ENSCJAG00000004500) #14	ENSCJAG00000041761	MFAP3 (ENSCJAG00000056328) #15	FAM114A2 (ENSCJAG00000004547) #16	ENSCJAG00000044423	ENSCJAG00000039293	GRIA1 (ENSCJAG00000004624) #17	ENSCJAG00000077707	NMUR2 (ENSCJAG00000086451) #18	GLRA1 (ENSCJAG00000015379) #19	G3BP1 (ENSCJAG00000015407) #20	ATOX1 (ENSCJAG00000015505) #21	SPARC (ENSCJAG00000042722) #22	FAT2 (ENSCJAG00000015562) #23	SLC36A1 (ENSCJAG00000015590) #24	ENSCJAG00000048432	ENSCJAG00000076411	SLC36A2 (ENSCJAG00000015624) #25	SLC36A3 (ENSCJAG00000015538) #26	GM2A (ENSCJAG00000073480) #27	CCDC69 (ENSCJAG00000015512) #28	ENSCJAG00000070086	ANXA6 (ENSCJAG00000020887) #29	TNIP1 (ENSCJAG00000020905) #30	GPX3 (ENSCJAG00000020924) #31	ENSCJAG00000078025	ENSCJAG00000076663	ENSCJAG00000059891
Cebidae_a	ANCESTRAL SPECIES	135														ENSGT00940000162517.j #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00460000041594.e.a.a	ENSGT00390000000341	ENSGT00730000111241	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20
Bolivian squirrel monkey	MODERN SPECIES	103	LARP1 (ENSSBOG00000019816) #11	ENSSBOG00000025459	HAND1 (ENSSBOG00000024034) #12	SAP30L (ENSSBOG00000019963) #13	GALNT10 (ENSSBOG00000033607) #14	MFAP3 (ENSSBOG00000022464) #15	FAM114A2 (ENSSBOG00000035995) #16	ENSSBOG00000035630	ENSSBOG00000023653	GRIA1 (ENSSBOG00000035431) #17	NMUR2 (ENSSBOG00000030249) #18	GLRA1 (ENSSBOG00000030214) #19	G3BP1 (ENSSBOG00000029969) #20	ATOX1 (ENSSBOG00000017626) #21	ENSSBOG00000026315	SPARC (ENSSBOG00000030157) #22	FAT2 (ENSSBOG00000022466) #23	SLC36A1 (ENSSBOG00000025643) #24	ENSSBOG00000028038	NUDT1 (ENSSBOG00000033662)	ENSSBOG00000020482	SLC36A2 (ENSSBOG00000036047) #25	SLC36A3 (ENSSBOG00000017155) #26	GM2A (ENSSBOG00000013460) #27	ENSSBOG00000025174	CCDC69 (ENSSBOG00000021927) #28	ANXA6 (ENSSBOG00000026080) #29	TNIP1 (ENSSBOG00000034852) #30	ENSSBOG00000021123 #31	ENSSBOG00000033460	ZNF300 (ENSSBOG00000025368) #32
Capuchin	MODERN SPECIES	126	GALNT10 (ENSCCAG00000032842) #14	MFAP3 (ENSCCAG00000032732) #15	FAM114A2 (ENSCCAG00000007197) #16	ENSCCAG00000023837	ENSCCAG00000025695	ENSCCAG00000016701	ENSCCAG00000034458	ENSCCAG00000020483	MRM2 (ENSCCAG00000032721)	GRIA1 (ENSCCAG00000037364) #17	NMUR2 (ENSCCAG00000033342) #18	GLRA1 (ENSCCAG00000036960) #19	G3BP1 (ENSCCAG00000028702) #20	ATOX1 (ENSCCAG00000028503) #21	ENSCCAG00000024371	SPARC (ENSCCAG00000032787) #22	FAT2 (ENSCCAG00000032964) #23	SLC36A1 (ENSCCAG00000025920) #24	ENSCCAG00000034732	ENSCCAG00000026554	ENSCCAG00000024070
Mas night monkey	MODERN SPECIES	966	ENSANAG00000031793	HAND1 (ENSANAG00000031480) #12	SAP30L (ENSANAG00000032719) #13	GALNT10 (ENSANAG00000033725) #14	MFAP3 (ENSANAG00000036628) #15	FAM114A2 (ENSANAG00000027510) #16	GRIA1 (ENSANAG00000029178) #17	ENSANAG00000011813	ENSANAG00000009431	NMUR2 (ENSANAG00000034858) #18	GLRA1 (ENSANAG00000023410) #19	ENSANAG00000036739	ENSANAG00000022416 #20	ATOX1 (ENSANAG00000035371) #21	ENSANAG00000035619	SPARC (ENSANAG00000021448) #22	ENSANAG00000012093	FAT2 (ENSANAG00000036708) #23	SLC36A1 (ENSANAG00000032041) #24	SLC36A2 (ENSANAG00000021675) #25	SLC36A3 (ENSANAG00000032963) #26	GM2A (ENSANAG00000034354) #27	CCDC69 (ENSANAG00000033186) #28	ANXA6 (ENSANAG00000033032) #29	TNIP1 (ENSANAG00000037058) #30	GPX3 (ENSANAG00000033799) #31	ZNF300 (ENSANAG00000029643) #32	ENSANAG00000028510	ENSANAG00000030805	ENSANAG00000029251	IRGM (ENSANAG00000029655) #33
Tarsier	MODERN SPECIES	2168													GLRA1 (ENSTSYG00000004584) #19	G3BP1 (ENSTSYG00000004570) #20	ENSTSYG00000006968 #21	SPARC (ENSTSYG00000032004) #22
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707
Lemuriformes	ANCESTRAL SPECIES	21	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Lemuriformes_a	ANCESTRAL SPECIES	13											ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00860000135878	ENSGT00390000009443 #34	ENSGT00910000147707	ENSGT00390000006954 #35
Coquerels sifaka	MODERN SPECIES	738												ENSPCOG00000028353	NMUR2 (ENSPCOG00000020904) #18	GLRA1 (ENSPCOG00000024858) #19	ATOX1 (ENSPCOG00000017476) #21	SPARC (ENSPCOG00000019877) #22	FAT2 (ENSPCOG00000018156) #23	SLC36A1 (ENSPCOG00000025601) #24	SLC36A2 (ENSPCOG00000020546) #25	SLC36A3 (ENSPCOG00000011526) #26	GM2A (ENSPCOG00000020696) #27	CCDC69 (ENSPCOG00000027047) #28	ANXA6 (ENSPCOG00000023563) #29	TNIP1 (ENSPCOG00000008153) #30	GPX3 (ENSPCOG00000023701) #31	ZNF300 (ENSPCOG00000001289) #32	SMIM3 (ENSPCOG00000001177) #34	DCTN4 (ENSPCOG00000020216) #35	RBM22 (ENSPCOG00000020028) #36	MYOZ3 (ENSPCOG00000024354) #37	SYNPO (ENSPCOG00000014120)
Greater bamboo lemur	MODERN SPECIES	50													G3BP1 (ENSPSMG00000022660) #20	ATOX1 (ENSPSMG00000022687) #21	ENSPSMG00000022692	SPARC (ENSPSMG00000022710) #22	FAT2 (ENSPSMG00000022740) #23	SLC36A1 (ENSPSMG00000022802) #24	ENSPSMG00000022834 #25	SLC36A2 (ENSPSMG00000022841) #25	SLC36A3 (ENSPSMG00000022857) #26	ENSPSMG00000022864 #27	CCDC69 (ENSPSMG00000022895) #28	ANXA6 (ENSPSMG00000023176) #29	TNIP1 (ENSPSMG00000023321) #30	GPX3 (ENSPSMG00000023344) #31	ENSPSMG00000023356	ZNF300 (ENSPSMG00000023364) #32	ENSPSMG00000023373 #33	ENSPSMG00000023383	SMIM3 (ENSPSMG00000023388) #34
Mouse lemur	MODERN SPECIES	15	MRPL22 (ENSMICG00000029267) #7	GEMIN5 (ENSMICG00000000846) #8	CNOT8 (ENSMICG00000000844) #9	FAXDC2 (ENSMICG00000000842) #10	LARP1 (ENSMICG00000000837) #11	HAND1 (ENSMICG00000030672) #12	SAP30L (ENSMICG00000035724) #13	GALNT10 (ENSMICG00000003562) #14	MFAP3 (ENSMICG00000003560) #15	FAM114A2 (ENSMICG00000003553) #16	GRIA1 (ENSMICG00000003547) #17	NMUR2 (ENSMICG00000026644) #18	GLRA1 (ENSMICG00000027464) #19	ENSMICG00000012235 #20	ATOX1 (ENSMICG00000009954) #21	SPARC (ENSMICG00000045601) #22	FAT2 (ENSMICG00000046358) #23	SLC36A1 (ENSMICG00000000700) #24	SLC36A2 (ENSMICG00000000696) #25	SLC36A3 (ENSMICG00000000691) #26	GM2A (ENSMICG00000031216) #27	CCDC69 (ENSMICG00000041463) #28	ANXA6 (ENSMICG00000000675) #29	TNIP1 (ENSMICG00000000664) #30	GPX3 (ENSMICG00000000660) #31	ZNF300 (ENSMICG00000037632) #32	ENSMICG00000046828 ##33	ENSMICG00000030041 #20	SPINK7 (ENSMICG00000002552)	SPINK9 (ENSMICG00000046265)	FBXO38 (ENSMICG00000002556)
Bushbaby	MODERN SPECIES	118	MRPL22 (ENSOGAG00000016777) #7	GEMIN5 (ENSOGAG00000016771) #8	CNOT8 (ENSOGAG00000016768) #9	FAXDC2 (ENSOGAG00000016764) #10	LARP1 (ENSOGAG00000016750) #11	HAND1 (ENSOGAG00000024691) #12	SAP30L (ENSOGAG00000010296) #13	GALNT10 (ENSOGAG00000010292) #14	MFAP3 (ENSOGAG00000010287) #15	FAM114A2 (ENSOGAG00000010284) #16	GRIA1 (ENSOGAG00000010277) #17	NMUR2 (ENSOGAG00000003746) #18	GLRA1 (ENSOGAG00000001729) #19	G3BP1 (ENSOGAG00000001726) #20	ATOX1 (ENSOGAG00000013217) #21	SPARC (ENSOGAG00000001725) #22	FAT2 (ENSOGAG00000015653) #23	SLC36A1 (ENSOGAG00000015651) #24	SLC36A2 (ENSOGAG00000011330) #25	SLC36A3 (ENSOGAG00000011328) #26	GM2A (ENSOGAG00000026021) #27	CCDC69 (ENSOGAG00000011324) #28	ENSOGAG00000034321	ENSOGAG00000011321 #29	TNIP1 (ENSOGAG00000000344) #30	ENSOGAG00000000343 #31	ENSOGAG00000026462 #31	ENSOGAG00000033243	ZNF300 (ENSOGAG00000031549) #32	ENSOGAG00000028713 #33	SMIM3 (ENSOGAG00000029557) #34
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00950000183007.a.b.g.a.b.b ##33	ENSGT00950000183007.a.b.g.a.a ##33	ENSGT01100000263517.b.d.m.a.b	ENSGT00940000154461.`c
Tree shrew	MODERN SPECIES	3660															ATOX1 (ENSTBEG00000004926) #21	SPARC (ENSTBEG00000004611) #22	FAT2 (ENSTBEG00000001516) #23	SLC36A1 (ENSTBEG00000000910) #24	SLC36A2 (ENSTBEG00000009473) #25	SLC36A3 (ENSTBEG00000009122) #26
Glires	ANCESTRAL SPECIES	7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00950000183007.a.b.g.a.b.b ##33	ENSGT00950000183007.a.b.g.a.a ##33	ENSGT01100000263517.b.d.m.a.b	ENSGT00940000154461.`c
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00950000183007.a.b.g.b #33	ENSGT00950000183007.a.b.g.a.b.a ##33	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Pika	MODERN SPECIES	4668															ATOX1 (ENSOPRG00000006249) #21	SPARC (ENSOPRG00000006237) #22	FAT2 (ENSOPRG00000006215) #23	SLC36A1 (ENSOPRG00000006195) #24	SLC36A2 (ENSOPRG00000006188) #25	SLC36A3 (ENSOPRG00000006177) #26	GM2A (ENSOPRG00000006171) #27	CCDC69 (ENSOPRG00000006158) #28	ANXA6 (ENSOPRG00000006132) #29	TNIP1 (ENSOPRG00000006118) #30	GPX3 (ENSOPRG00000006110) #31
Rabbit	MODERN SPECIES	14	FAXDC2 (ENSOCUG00000013078) #10	LARP1 (ENSOCUG00000013066) #11	HAND1 (ENSOCUG00000011099) #12	SAP30L (ENSOCUG00000011095) #13	GALNT10 (ENSOCUG00000011091) #14	ENSOCUG00000036053	MFAP3 (ENSOCUG00000027241) #15	FAM114A2 (ENSOCUG00000016788) #16	GRIA1 (ENSOCUG00000016780) #17	ENSOCUG00000031731	ENSOCUG00000024649	NMUR2 (ENSOCUG00000013507) #18	ENSOCUG00000029929	GLRA1 (ENSOCUG00000002648) #19	ENSOCUG00000022143 #20	SPARC (ENSOCUG00000012120) #22	ATOX1 (ENSOCUG00000038763) #21	FAT2 (ENSOCUG00000012103) #23	SLC36A1 (ENSOCUG00000012093) #24	SLC36A2 (ENSOCUG00000015850) #25	SLC36A3 (ENSOCUG00000015841) #26	ENSOCUG00000015837 #27	ANXA6 (ENSOCUG00000005379) #29	ENSOCUG00000037867 #31	ZNF300 (ENSOCUG00000037473) #32	ENSOCUG00000028024 #33	ENSOCUG00000024432 ##33	DCTN4 (ENSOCUG00000013510) #35	RBM22 (ENSOCUG00000011532) #36	MYOZ3 (ENSOCUG00000013346) #37	SYNPO (ENSOCUG00000009270)
Rodentia	ANCESTRAL SPECIES	7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Hystricomorpha	ANCESTRAL SPECIES	30	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577.l #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00950000182924.B.a.b	ENSGT00940000160154	ENSGT00940000158570	ENSGT00940000157177	ENSGT00940000156580	ENSGT00940000161317	ENSGT00550000074618.a.a	ENSGT00390000012652.bb	ENSGT00390000012652.ab.a.m	ENSGT00940000159831	ENSGT00950000182869.e.a.b	ENSGT00440000037499	ENSGT00940000158076
Hystricomorpha_a	ANCESTRAL SPECIES	28	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577.l #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00950000182924.B.a.b	ENSGT00940000160154	ENSGT00940000158570	ENSGT00940000157177	ENSGT00940000156580	ENSGT00940000161317	ENSGT00550000074618.a.a	ENSGT00390000012652.bb	ENSGT00940000159831	ENSGT00950000182869.e.a.b	ENSGT00440000037499	ENSGT00940000158076	ENSGT00940000156067
Hystricomorpha_b	ANCESTRAL SPECIES	19	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577.l #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.dc #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00950000182924.B.a.b	ENSGT00940000160154	ENSGT00940000158570	ENSGT00940000157177	ENSGT00940000156580	ENSGT00940000161317	ENSGT00550000074618.a.a	ENSGT00390000012652.bb	ENSGT00940000159831	ENSGT00950000182869.e.a.b	ENSGT00440000037499	ENSGT00940000158076	ENSGT00940000156067
Long-tailed chinchilla	MODERN SPECIES	115	SGCD (ENSCLAG00000014749)	MRPL22 (ENSCLAG00000011777) #7	GEMIN5 (ENSCLAG00000011942) #8	CNOT8 (ENSCLAG00000012116) #9	FAXDC2 (ENSCLAG00000011632) #10	LARP1 (ENSCLAG00000012755) #11	HAND1 (ENSCLAG00000011515) #12	SAP30L (ENSCLAG00000011128) #13	GALNT10 (ENSCLAG00000013273) #14	MFAP3 (ENSCLAG00000014677) #15	FAM114A2 (ENSCLAG00000013645) #16	GRIA1 (ENSCLAG00000017069) #17	GLRA1 (ENSCLAG00000015181) #19	G3BP1 (ENSCLAG00000012636) #20	ATOX1 (ENSCLAG00000011704) #21	SPARC (ENSCLAG00000012628) #22	FAT2 (ENSCLAG00000015326) #23	SLC36A1 (ENSCLAG00000013787) #24	ENSCLAG00000017958 ##33	SEC24A (ENSCLAG00000013518)	ENSCLAG00000015791	JADE2 (ENSCLAG00000014619)	CDKN2AIPNL (ENSCLAG00000015651)	UBE2B (ENSCLAG00000015390)	CDKL3 (ENSCLAG00000013562)	PPP2CA (ENSCLAG00000015668)	ENSCLAG00000012399	TCF7 (ENSCLAG00000015886)	ENSCLAG00000011602	C5orf15 (ENSCLAG00000015163)	FSTL4 (ENSCLAG00000013940)
Degu	MODERN SPECIES	70	GEMIN5 (ENSODEG00000009311) #8	ENSODEG00000009965 #9	FAXDC2 (ENSODEG00000009137) #10	LARP1 (ENSODEG00000010824) #11	HAND1 (ENSODEG00000009445) #12	SAP30L (ENSODEG00000008855) #13	GALNT10 (ENSODEG00000008896) #14	MFAP3 (ENSODEG00000009031) #15	ENSODEG00000009084 #16	GRIA1 (ENSODEG00000009490) #17	NMUR2 (ENSODEG00000009849) #18	GLRA1 (ENSODEG00000009543) #19	ENSODEG00000008869 #20	ENSODEG00000019553	ENSODEG00000009104 #21	SPARC (ENSODEG00000009746) #22	FAT2 (ENSODEG00000010366) #23	SLC36A1 (ENSODEG00000010341) #24	ENSODEG00000019626	SEC24A (ENSODEG00000008665)	SAR1B (ENSODEG00000009764)	JADE2 (ENSODEG00000009149)	ENSODEG00000019739	ENSODEG00000008488	UBE2B (ENSODEG00000009143)	CDKL3 (ENSODEG00000009715)	ENSODEG00000019628	ENSODEG00000008982	ENSODEG00000008861	ENSODEG00000008274	TCF7 (ENSODEG00000013097)
Guinea pig	MODERN SPECIES	81	EIF3M (ENSCPOG00000003846)	WT1 (ENSCPOG00000033316)	RCN1 (ENSCPOG00000033869)	PAX6 (ENSCPOG00000007245)	ELP4 (ENSCPOG00000007237)	IMMP1L (ENSCPOG00000020043)	DNAJC24 (ENSCPOG00000005159)	MPPED2 (ENSCPOG00000034992)	ARL14EP (ENSCPOG00000007727)	FSHB (ENSCPOG00000007723)	KCNA4 (ENSCPOG00000039821)	ENSCPOG00000009931 #18	GLRA1 (ENSCPOG00000013725) #19	G3BP1 (ENSCPOG00000006626) #20	ATOX1 (ENSCPOG00000034767) #21	SPARC (ENSCPOG00000025242) #22	FAT2 (ENSCPOG00000014431) #23	SLC36A1 (ENSCPOG00000014430) #24	ENSCPOG00000034856 ##33	ENSCPOG00000023450 ##33	SEC24A (ENSCPOG00000014716)	SAR1B (ENSCPOG00000038655)	JADE2 (ENSCPOG00000008323)	CDKN2AIPNL (ENSCPOG00000015544)	UBE2B (ENSCPOG00000030926)	ENSCPOG00000007474	PPP2CA (ENSCPOG00000039543)	SKP1 (ENSCPOG00000005164)	TCF7 (ENSCPOG00000020029)	ENSCPOG00000023840	C5orf15 (ENSCPOG00000010300)
Naked mole-rat female	MODERN SPECIES	23	LARP1 (ENSHGLG00000006267) #11	HAND1 (ENSHGLG00000008657) #12	SAP30L (ENSHGLG00000040967) #13	GALNT10 (ENSHGLG00000011151) #14	MFAP3 (ENSHGLG00000012228) #15	FAM114A2 (ENSHGLG00000005817) #16	GRIA1 (ENSHGLG00000008564) #17	ENSHGLG00000049292	ENSHGLG00000040393	NMUR2 (ENSHGLG00000016664) #18	ENSHGLG00000046430	GLRA1 (ENSHGLG00000016730) #19	G3BP1 (ENSHGLG00000014921) #20	ENSHGLG00000033423	ATOX1 (ENSHGLG00000015116) #21	SPARC (ENSHGLG00000016693) #22	ENSHGLG00000015818 #23	ENSHGLG00000041388 #24	ENSHGLG00000045552	ENSHGLG00000016500	SAR1B (ENSHGLG00000047696)	ENSHGLG00000043843	CDKN2AIPNL (ENSHGLG00000015833)	UBE2B (ENSHGLG00000015894)	ENSHGLG00000018175	PPP2CA (ENSHGLG00000049249)	ENSHGLG00000046526	TCF7 (ENSHGLG00000047039)	ENSHGLG00000016961	C5orf15 (ENSHGLG00000046112)	FSTL4 (ENSHGLG00000013297)
Sciuridae	ANCESTRAL SPECIES	33	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d.b #18	ENSGT01100000263484.A.d.a #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Marmotini	ANCESTRAL SPECIES	38	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d.b #18	ENSGT01100000263484.A.d.a #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000154772.bb	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b
Alpin marmot	MODERN SPECIES	31	GEMIN5 (ENSMMMG00000013554) #8	CNOT8 (ENSMMMG00000013723) #9	FAXDC2 (ENSMMMG00000013743) #10	LARP1 (ENSMMMG00000013777) #11	HAND1 (ENSMMMG00000013794) #12	SAP30L (ENSMMMG00000013804) #13	GALNT10 (ENSMMMG00000013815) #14	MFAP3 (ENSMMMG00000013826) #15	FAM114A2 (ENSMMMG00000013837) #16	GRIA1 (ENSMMMG00000013882) #17	ENSMMMG00000013957 #18	ENSMMMG00000013969 #18	GLRA1 (ENSMMMG00000013990) #19	ENSMMMG00000014015 #20	ATOX1 (ENSMMMG00000014027) #21	SPARC (ENSMMMG00000014038) #22	ENSMMMG00000014108	FAT2 (ENSMMMG00000014141) #23	SLC36A1 (ENSMMMG00000014187) #24	SLC36A2 (ENSMMMG00000014208) #25	SLC36A3 (ENSMMMG00000014222) #26	GM2A (ENSMMMG00000014247) #27	CCDC69 (ENSMMMG00000014256) #28	ANXA6 (ENSMMMG00000014262) #29	TNIP1 (ENSMMMG00000014297) #30	GPX3 (ENSMMMG00000014332) #31	HINT1 (ENSMMMG00000014343)	LYRM7 (ENSMMMG00000014350)	CDC42SE2 (ENSMMMG00000014356)	RAPGEF6 (ENSMMMG00000014369)	FNIP1 (ENSMMMG00000014670)
Marmotini_b	ANCESTRAL SPECIES	96	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d.b #18	ENSGT01100000263484.A.d.a #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000154772.bb	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26
Squirrel	MODERN SPECIES	115	GEMIN5 (ENSSTOG00000005759) #8	ENSSTOG00000005745 #9	FAXDC2 (ENSSTOG00000005732) #10	LARP1 (ENSSTOG00000005678) #11	HAND1 (ENSSTOG00000025850) #12	SAP30L (ENSSTOG00000020584) #13	GALNT10 (ENSSTOG00000008893) #14	MFAP3 (ENSSTOG00000006964) #15	FAM114A2 (ENSSTOG00000006924) #16	GRIA1 (ENSSTOG00000008747) #17	ENSSTOG00000020908 #18	ENSSTOG00000000400 #18	GLRA1 (ENSSTOG00000015938) #19	G3BP1 (ENSSTOG00000015928) #20	ATOX1 (ENSSTOG00000029382) #21	SPARC (ENSSTOG00000007002) #22	ENSSTOG00000029374	FAT2 (ENSSTOG00000019388) #23	SLC36A1 (ENSSTOG00000006917) #24	SLC36A2 (ENSSTOG00000006895) #25	SLC36A3 (ENSSTOG00000006878) #26
Arctic ground squirrel	MODERN SPECIES	57	CNOT8 (ENSUPAG00010017652) #9	FAXDC2 (ENSUPAG00010017661) #10	LARP1 (ENSUPAG00010017672) #11	HAND1 (ENSUPAG00010017683) #12	SAP30L (ENSUPAG00010017689) #13	ENSUPAG00010017692	GALNT10 (ENSUPAG00010017696) #14	MFAP3 (ENSUPAG00010017713) #15	FAM114A2 (ENSUPAG00010017716) #16	GRIA1 (ENSUPAG00010017762) #17	ENSUPAG00010017870 #18	ENSUPAG00010017877 #18	GLRA1 (ENSUPAG00010017888) #19	G3BP1 (ENSUPAG00010017917) #20	ENSUPAG00010017925 #21	SPARC (ENSUPAG00010017938) #22	ENSUPAG00010017975	FAT2 (ENSUPAG00010017980) #23	SLC36A1 (ENSUPAG00010018012) #24	SLC36A2 (ENSUPAG00010018020) #25
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005014312 #9	FAXDC2 (ENSSVLG00005014397) #10	LARP1 (ENSSVLG00005014609) #11	HAND1 (ENSSVLG00005014827) #12	SAP30L (ENSSVLG00005014870) #13	GALNT10 (ENSSVLG00005014997) #14	MFAP3 (ENSSVLG00005015093) #15	FAM114A2 (ENSSVLG00005015140) #16	GRIA1 (ENSSVLG00005015406) #17	ENSSVLG00005016055 #18	ENSSVLG00005016196 #18	GLRA1 (ENSSVLG00005016273) #19	G3BP1 (ENSSVLG00005016419) #20	ATOX1 (ENSSVLG00005016532) #21	ENSSVLG00005016582	SPARC (ENSSVLG00005016618) #22	FAT2 (ENSSVLG00005016721) #23	SLC36A1 (ENSSVLG00005016940) #24	SLC36A2 (ENSSVLG00005017051) #25	SLC36A3 (ENSSVLG00005017282) #26	ENSSVLG00005017410	ENSSVLG00005017465	GM2A (ENSSVLG00005017524) #27	CCDC69 (ENSSVLG00005017553) #28	ENSSVLG00005017588	ANXA6 (ENSSVLG00005017644) #29	TNIP1 (ENSSVLG00005017789) #30	GPX3 (ENSSVLG00005017890) #31	ENSSVLG00005017927	LYRM7 (ENSSVLG00005017984)	CDC42SE2 (ENSSVLG00005018079)
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Myomorpha	ANCESTRAL SPECIES	28	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Muroidea	ANCESTRAL SPECIES	10	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Golden Hamster	MODERN SPECIES	627	Gemin5 (ENSMAUG00000005361) #8	ENSMAUG00000022252 #9	Gm12248 (ENSMAUG00000021997) #10	Larp1 (ENSMAUG00000001385) #11	Hand1 (ENSMAUG00000022272) #12	Sap30l (ENSMAUG00000001548) #13	Galnt10 (ENSMAUG00000022260) #14	Mfap3 (ENSMAUG00000022064) #15	Fam114a2 (ENSMAUG00000003829) #16	Gria1 (ENSMAUG00000022238) #17	Nmur2 (ENSMAUG00000001459) #18	ENSMAUG00000022058	Glra1 (ENSMAUG00000001329) #19	G3bp1 (ENSMAUG00000008655) #20	Atox1 (ENSMAUG00000011916) #21	Sparc (ENSMAUG00000015053) #22	Fat2 (ENSMAUG00000001659) #23	Slc36a1 (ENSMAUG00000008064) #24	Slc36a2 (ENSMAUG00000012050) #25	Slc36a3 (ENSMAUG00000010340) #26	Gm2a (ENSMAUG00000007969) #27	Anxa6 (ENSMAUG00000008199) #29	Tnip1 (ENSMAUG00000010278) #30	Gpx3 (ENSMAUG00000002070) #31	Hint1 (ENSMAUG00000003917)	Lyrm7 (ENSMAUG00000015188)	ENSMAUG00000015029	Rapgef6 (ENSMAUG00000010508)	Fnip1 (ENSMAUG00000008472)	Meikin (ENSMAUG00000009150)	Acsl6 (ENSMAUG00000008698)
Chinese hamster chok1gshd	MODERN SPECIES	229	Cnot8 (ENSCGRG00001014687) #9	Gm12248 (ENSCGRG00001013725) #10	Larp1 (ENSCGRG00001016913) #11	Hand1 (ENSCGRG00001013396) #12	Sap30l (ENSCGRG00001023382) #13	Galnt10 (ENSCGRG00001024161) #14	Mfap3 (ENSCGRG00001023022) #15	Fam114a2 (ENSCGRG00001019860) #16	ENSCGRG00001021245	Gria1 (ENSCGRG00001010996) #17	Nmur2 (ENSCGRG00001022445) #18	ENSCGRG00001021201	Glra1 (ENSCGRG00001018124) #19	ENSCGRG00001015623 #20	Atox1 (ENSCGRG00001013451) #21	Sparc (ENSCGRG00001018155) #22	Fat2 (ENSCGRG00001009133) #23	Slc36a1 (ENSCGRG00001006530) #24	Slc36a2 (ENSCGRG00001000746) #25	Slc36a3 (ENSCGRG00001004759) #26	Gm2a (ENSCGRG00001013028) #27	Ccdc69 (ENSCGRG00001012272) #28	Anxa6 (ENSCGRG00001009081) #29	Tnip1 (ENSCGRG00001024112) #30	Gpx3 (ENSCGRG00001021713) #31	Hint1 (ENSCGRG00001023991)	Lyrm7 (ENSCGRG00001013810)	Cdc42se2 (ENSCGRG00001011403)	Rapgef6 (ENSCGRG00001017839)	Fnip1 (ENSCGRG00001019044)	Meikin (ENSCGRG00001014860)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Northern American deer mouse	MODERN SPECIES	21	ENSPEMG00000028084 ##33	Mrpl22 (ENSPEMG00000021188) #7	Gemin5 (ENSPEMG00000014992) #8	Cnot8 (ENSPEMG00000021153) #9	Larp1 (ENSPEMG00000022523) #11	Hand1 (ENSPEMG00000021867) #12	Sap30l (ENSPEMG00000029956) #13	Galnt10 (ENSPEMG00000021112) #14	Mfap3 (ENSPEMG00000029755) #15	Fam114a2 (ENSPEMG00000020352) #16	Gria1 (ENSPEMG00000020992) #17	Nmur2 (ENSPEMG00000013761) #18	Glra1 (ENSPEMG00000024408) #19	G3bp1 (ENSPEMG00000020531) #20	Atox1 (ENSPEMG00000015125) #21	Sparc (ENSPEMG00000022374) #22	Fat2 (ENSPEMG00000010255) #23	Slc36a1 (ENSPEMG00000027621) #24	Slc36a2 (ENSPEMG00000006570) #25	Slc36a3 (ENSPEMG00000014810) #26	Gm2a (ENSPEMG00000024547) #27	Ccdc69 (ENSPEMG00000020807) #28	Anxa6 (ENSPEMG00000001728) #29	Tnip1 (ENSPEMG00000020685) #30	Gpx3 (ENSPEMG00000020568) #31	Hint1 (ENSPEMG00000026673)	Lyrm7 (ENSPEMG00000015408)	Cdc42se2 (ENSPEMG00000028684)	Rapgef6 (ENSPEMG00000018231)	Fnip1 (ENSPEMG00000006330)	Meikin (ENSPEMG00000021124)
Prairie vole	MODERN SPECIES	15	Mrpl22 (ENSMOCG00000021016) #7	Gemin5 (ENSMOCG00000018131) #8	ENSMOCG00000002156 #9	Gm12248 (ENSMOCG00000018783) #10	Larp1 (ENSMOCG00000008920) #11	Hand1 (ENSMOCG00000012912) #12	Sap30l (ENSMOCG00000005889) #13	Galnt10 (ENSMOCG00000022339) #14	Mfap3 (ENSMOCG00000022737) #15	Fam114a2 (ENSMOCG00000003408) #16	Gria1 (ENSMOCG00000022383) #17	Nmur2 (ENSMOCG00000020916) #18	Glra1 (ENSMOCG00000022733) #19	G3bp1 (ENSMOCG00000005709) #20	Atox1 (ENSMOCG00000012051) #21	Sparc (ENSMOCG00000014197) #22	Fat2 (ENSMOCG00000004996) #23	Slc36a1 (ENSMOCG00000018359) #24	Slc36a2 (ENSMOCG00000019153) #25	Slc36a3 (ENSMOCG00000022181) #26	Gm2a (ENSMOCG00000021206) #27	Ccdc69 (ENSMOCG00000001057) #28	Anxa6 (ENSMOCG00000022776) #29	Tnip1 (ENSMOCG00000019037) #30	Gpx3 (ENSMOCG00000012707) #31	Hint1 (ENSMOCG00000015219)	ENSMOCG00000021969	Cdc42se2 (ENSMOCG00000019753)	Rapgef6 (ENSMOCG00000002583)	Fnip1 (ENSMOCG00000019976)	Meikin (ENSMOCG00000020433)
Murinae	ANCESTRAL SPECIES	7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Mus	ANCESTRAL SPECIES	2	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Mus_A	ANCESTRAL SPECIES	2	ENSGT00620000088064 #8	ENSGT00390000000080.a.b.n #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.sb.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Ryukyu mouse	MODERN SPECIES	2	MGP_CAROLIEiJ_G0016387	Mrpl22 (MGP_CAROLIEiJ_G0016386) #7	Gemin5 (MGP_CAROLIEiJ_G0016385) #8	Cnot8 (MGP_CAROLIEiJ_G0016384) #9	Larp1 (MGP_CAROLIEiJ_G0016383) #11	Hand1 (MGP_CAROLIEiJ_G0016382) #12	Sap30l (MGP_CAROLIEiJ_G0016381) #13	Galnt10 (MGP_CAROLIEiJ_G0016380) #14	Mfap3 (MGP_CAROLIEiJ_G0016379) #15	Fam114a2 (MGP_CAROLIEiJ_G0016378) #16	Gria1 (MGP_CAROLIEiJ_G0016377) #17	Nmur2 (MGP_CAROLIEiJ_G0016376) #18	Glra1 (MGP_CAROLIEiJ_G0016375) #19	G3bp1 (MGP_CAROLIEiJ_G0016374) #20	Atox1 (MGP_CAROLIEiJ_G0016373) #21	Sparc (MGP_CAROLIEiJ_G0016372) #22	Fat2 (MGP_CAROLIEiJ_G0016371) #23	Slc36a1 (MGP_CAROLIEiJ_G0016370) #24	Slc36a2 (MGP_CAROLIEiJ_G0016369) #25	Slc36a3 (MGP_CAROLIEiJ_G0016368) #26	Gm2a (MGP_CAROLIEiJ_G0016367) #27	Ccdc69 (MGP_CAROLIEiJ_G0016366) #28	Anxa6 (MGP_CAROLIEiJ_G0016365) #29	Tnip1 (MGP_CAROLIEiJ_G0016364) #30	MGP_CAROLIEiJ_G0016363 #31	Hint1 (MGP_CAROLIEiJ_G0016362)	Lyrm7 (MGP_CAROLIEiJ_G0016361)	Cdc42se2 (MGP_CAROLIEiJ_G0016360)	Rapgef6 (MGP_CAROLIEiJ_G0016359)	Fnip1 (MGP_CAROLIEiJ_G0016358)	Meikin (MGP_CAROLIEiJ_G0016357)
Mus_B	ANCESTRAL SPECIES	2	ENSGT00620000088064 #8	ENSGT00390000000080.a.b.n #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.sb.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
Mouse	MODERN SPECIES	2	Mrpl22 (ENSMUSG00000020514) #7	Gemin5 (ENSMUSG00000037275) #8	Cnot8 (ENSMUSG00000020515) #9	Gm12248 (ENSMUSG00000086962) #10	Larp1 (ENSMUSG00000037331) #11	Hand1 (ENSMUSG00000037335) #12	Sap30l (ENSMUSG00000020519) #13	Galnt10 (ENSMUSG00000020520) #14	Mfap3 (ENSMUSG00000020522) #15	Fam114a2 (ENSMUSG00000020523) #16	Gria1 (ENSMUSG00000020524) #17	Nmur2 (ENSMUSG00000037393) #18	Glra1 (ENSMUSG00000000263) #19	G3bp1 (ENSMUSG00000018583) #20	Atox1 (ENSMUSG00000018585) #21	Sparc (ENSMUSG00000018593) #22	Fat2 (ENSMUSG00000055333) #23	Slc36a1 (ENSMUSG00000020261) #24	Slc36a2 (ENSMUSG00000020264) #25	Slc36a3 (ENSMUSG00000049491) #26	Gm2a (ENSMUSG00000000594) #27	Ccdc69 (ENSMUSG00000049588) #28	Anxa6 (ENSMUSG00000018340) #29	Tnip1 (ENSMUSG00000020400) #30	Gpx3 (ENSMUSG00000018339) #31	Hint1 (ENSMUSG00000020267)	Lyrm7 (ENSMUSG00000020268)	Cdc42se2 (ENSMUSG00000052298)	Rapgef6 (ENSMUSG00000037533)	Fnip1 (ENSMUSG00000035992)	Meikin (ENSMUSG00000020332)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000000080.a.b.n #9	ENSGT00390000000080.a.b.m #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.sb.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154451	ENSGT00390000017923	ENSGT00940000158245	ENSGT00940000158124	ENSGT00390000009391.b	ENSGT00390000016270
spretus	MODERN SPECIES	2	Igtp (MGP_SPRETEiJ_G0017229) #33	Mrpl22 (MGP_SPRETEiJ_G0017228) #7	Gemin5 (MGP_SPRETEiJ_G0017227) #8	Cnot8 (MGP_SPRETEiJ_G0017226) #9	Larp1 (MGP_SPRETEiJ_G0017225) #11	Hand1 (MGP_SPRETEiJ_G0017224) #12	Sap30l (MGP_SPRETEiJ_G0017223) #13	Galnt10 (MGP_SPRETEiJ_G0017222) #14	Mfap3 (MGP_SPRETEiJ_G0017221) #15	Fam114a2 (MGP_SPRETEiJ_G0017220) #16	Gria1 (MGP_SPRETEiJ_G0017219) #17	Nmur2 (MGP_SPRETEiJ_G0017218) #18	Glra1 (MGP_SPRETEiJ_G0017217) #19	G3bp1 (MGP_SPRETEiJ_G0017216) #20	Atox1 (MGP_SPRETEiJ_G0017215) #21	Sparc (MGP_SPRETEiJ_G0017214) #22	Fat2 (MGP_SPRETEiJ_G0017213) #23	Slc36a1 (MGP_SPRETEiJ_G0017212) #24	Slc36a2 (MGP_SPRETEiJ_G0017211) #25	Slc36a3 (MGP_SPRETEiJ_G0017210) #26	Gm2a (MGP_SPRETEiJ_G0017209) #27	Ccdc69 (MGP_SPRETEiJ_G0017208) #28	Anxa6 (MGP_SPRETEiJ_G0017207) #29	Tnip1 (MGP_SPRETEiJ_G0017206) #30	MGP_SPRETEiJ_G0017205 #31	Hint1 (MGP_SPRETEiJ_G0017204)	Lyrm7 (MGP_SPRETEiJ_G0017203)	Cdc42se2 (MGP_SPRETEiJ_G0017202)	Rapgef6 (MGP_SPRETEiJ_G0017201)	Fnip1 (MGP_SPRETEiJ_G0017200)	Meikin (MGP_SPRETEiJ_G0017199)
Steppe mouse	MODERN SPECIES	3255												Nmur2 (ENSMSIG00000009215) #18	Glra1 (ENSMSIG00000008952) #19	G3bp1 (ENSMSIG00000008913) #20	Atox1 (ENSMSIG00000008896) #21	ENSMSIG00000008765 #22	Fat2 (ENSMSIG00000008649) #23	Slc36a1 (ENSMSIG00000008490) #24	Slc36a2 (ENSMSIG00000008457) #25	Slc36a3 (ENSMSIG00000008419) #26	Gm2a (ENSMSIG00000008397) #27	Ccdc69 (ENSMSIG00000008369) #28	ENSMSIG00000008354	Anxa6 (ENSMSIG00000008219) #29	Gpx3 (ENSMSIG00000008214) #31	Tnip1 (ENSMSIG00000008139) #30	Hint1 (ENSMSIG00000008122)	ENSMSIG00000008083	Cdc42se2 (ENSMSIG00000008050)	Rapgef6 (ENSMSIG00000005696)	Fnip1 (ENSMSIG00000005525)
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0017522	Mrpl22 (MGP_PahariEiJ_G0017521) #7	Gemin5 (MGP_PahariEiJ_G0017520) #8	Cnot8 (MGP_PahariEiJ_G0017519) #9	Larp1 (MGP_PahariEiJ_G0017518) #11	Hand1 (MGP_PahariEiJ_G0017517) #12	Sap30l (MGP_PahariEiJ_G0017516) #13	Galnt10 (MGP_PahariEiJ_G0017515) #14	Mfap3 (MGP_PahariEiJ_G0017514) #15	Fam114a2 (MGP_PahariEiJ_G0017513) #16	Gria1 (MGP_PahariEiJ_G0017512) #17	Nmur2 (MGP_PahariEiJ_G0017511) #18	Glra1 (MGP_PahariEiJ_G0017510) #19	G3bp1 (MGP_PahariEiJ_G0017509) #20	Atox1 (MGP_PahariEiJ_G0017508) #21	Sparc (MGP_PahariEiJ_G0017507) #22	Fat2 (MGP_PahariEiJ_G0017506) #23	Slc36a1 (MGP_PahariEiJ_G0017505) #24	MGP_PahariEiJ_G0017504 #25	Slc36a3 (MGP_PahariEiJ_G0017503) #26	Gm2a (MGP_PahariEiJ_G0017502) #27	Ccdc69 (MGP_PahariEiJ_G0017501) #28	Anxa6 (MGP_PahariEiJ_G0017500) #29	Tnip1 (MGP_PahariEiJ_G0017499) #30	MGP_PahariEiJ_G0017498 #31	Hint1 (MGP_PahariEiJ_G0017497)	Lyrm7 (MGP_PahariEiJ_G0017496)	Cdc42se2 (MGP_PahariEiJ_G0017495)	Rapgef6 (MGP_PahariEiJ_G0017494)	Fnip1 (MGP_PahariEiJ_G0017493)	Meikin (MGP_PahariEiJ_G0017492)
Rat	MODERN SPECIES	1	Hand1 (ENSRNOG00000002582) #12	Sap30l (ENSRNOG00000002575) #13	Galnt10 (ENSRNOG00000002488) #14	Mfap3 (ENSRNOG00000002443) #15	Fam114a2 (ENSRNOG00000002423) #16	Gria1 (ENSRNOG00000045816) #17	ENSRNOG00000069020	LOC102552882 (ENSRNOG00000038474)	LOC120095104 (ENSRNOG00000062939)	LOC102552619 (ENSRNOG00000027803)	Nmur2 (ENSRNOG00000014081) #18	RGD1563668 (ENSRNOG00000038478)	Glra1 (ENSRNOG00000013588) #19	G3bp1 (ENSRNOG00000013186) #20	Atox1 (ENSRNOG00000013118) #21	Sparc (ENSRNOG00000012840) #22	Fat2 (ENSRNOG00000012575) #23	Slc36a1 (ENSRNOG00000012356) #24	Slc36a2 (ENSRNOG00000011892) #25	Slc36a3 (ENSRNOG00000021310) #26	Gm2a (ENSRNOG00000052219) #27	Ccdc69 (ENSRNOG00000021370) #28	Ybx1-ps20 (ENSRNOG00000032902)	LOC100362400 (ENSRNOG00000064427)	Anxa6 (ENSRNOG00000010668) #29	Tnip1 (ENSRNOG00000010370) #30	Lyrm7 (ENSRNOG00000045961)	Cdc42se2-ps1 (ENSRNOG00000042449)	Rapgef6 (ENSRNOG00000009995)	Fnip1 (ENSRNOG00000009104)	Meikin (ENSRNOG00000026596)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1606													Glra1 (ENSNGAG00000006117) #19	G3bp1 (ENSNGAG00000010742) #20	Atox1 (ENSNGAG00000019105) #21	Sparc (ENSNGAG00000019526) #22	Fat2 (ENSNGAG00000005998) #23	Slc36a1 (ENSNGAG00000018121) #24	Slc36a2 (ENSNGAG00000019725) #25	Slc36a3 (ENSNGAG00000000782) #26	Gm2a (ENSNGAG00000006698) #27	Ccdc69 (ENSNGAG00000004298) #28	Anxa6 (ENSNGAG00000001390) #29	Tnip1 (ENSNGAG00000019234) #30	Gpx3 (ENSNGAG00000023218) #31	Hint1 (ENSNGAG00000016071)	Lyrm7 (ENSNGAG00000022092)	Cdc42se2 (ENSNGAG00000017742)
Lesser Egyptian jerboa	MODERN SPECIES	133	Canx (ENSJJAG00000022784)	Maml1 (ENSJJAG00000023847)	ENSJJAG00000019535	Mgat4b (ENSJJAG00000021000)	ENSJJAG00000012040	Mrnip (ENSJJAG00000010968)	Tbc1d9b (ENSJJAG00000013138)	ENSJJAG00000013685	Rnf130 (ENSJJAG00000014438)	Rasgef1c (ENSJJAG00000016338)	Mapk9 (ENSJJAG00000012308)	Gfpt2 (ENSJJAG00000014420)	Cnot6 (ENSJJAG00000012296)	Scgb3a1 (ENSJJAG00000011541)	Flt4 (ENSJJAG00000017737)	Sparc (ENSJJAG00000003597) #22	Fat2 (ENSJJAG00000019929) #23	Slc36a1 (ENSJJAG00000015295) #24	Slc36a2 (ENSJJAG00000022506) #25	Slc36a3 (ENSJJAG00000012424) #26	Gm2a (ENSJJAG00000017378) #27	ENSJJAG00000000754	Anxa6 (ENSJJAG00000019090) #29	Tnip1 (ENSJJAG00000010474) #30	Gpx3 (ENSJJAG00000024418) #31	ENSJJAG00000021235	Cdc42se2 (ENSJJAG00000016990)	Rapgef6 (ENSJJAG00000021502)	Fnip1 (ENSJJAG00000023248)	ENSJJAG00000009096	Acsl6 (ENSJJAG00000011523)
Kangaroo rat	MODERN SPECIES	495												Nmur2 (ENSDORG00000024711) #18	Glra1 (ENSDORG00000012396) #19	G3bp1 (ENSDORG00000025959) #20	Atox1 (ENSDORG00000002944) #21	Sparc (ENSDORG00000001562) #22	Fat2 (ENSDORG00000023995) #23	Slc36a1 (ENSDORG00000012735) #24	Slc36a2 (ENSDORG00000012631) #25	Slc36a3 (ENSDORG00000012630) #26	Gm2a (ENSDORG00000012628) #27	ENSDORG00000016699 #28	Anxa6 (ENSDORG00000016572) #29	Tnip1 (ENSDORG00000006740) #30	Gpx3 (ENSDORG00000028624) #31	ENSDORG00000011944	Lyrm7 (ENSDORG00000026901)	Cdc42se2 (ENSDORG00000027349)	ENSDORG00000012701	Fnip1 (ENSDORG00000007170)	Acsl6 (ENSDORG00000007104)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00510000046787.e.b #22
Hedgehog	MODERN SPECIES	1521																SPARC (ENSEEUG00000008730) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00950000185482	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Suina	ANCESTRAL SPECIES	25	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000155171.a.b	ENSGT00390000000183	ENSGT00550000074988	ENSGT00390000014771.a	ENSGT01100000263477.E	ENSGT00940000158036
Pig	MODERN SPECIES	7	GEMIN5 (ENSSSCG00000017066) #8	CNOT8 (ENSSSCG00000017067) #9	FAXDC2 (ENSSSCG00000017068) #10	LARP1 (ENSSSCG00000017069) #11	HAND1 (ENSSSCG00000031080) #12	SAP30L (ENSSSCG00000033176) #13	GALNT10 (ENSSSCG00000017072) #14	MFAP3 (ENSSSCG00000034706) #15	FAM114A2 (ENSSSCG00000017073) #16	GRIA1 (ENSSSCG00000022569) #17	NMUR2 (ENSSSCG00000017076) #18	ENSSSCG00000017077	GLRA1 (ENSSSCG00000017078) #19	G3BP1 (ENSSSCG00000035676) #20	ATOX1 (ENSSSCG00000026414)	SPARC (ENSSSCG00000017082) #22	FAT2 (ENSSSCG00000017084) #23	SLC36A1 (ENSSSCG00000035442) #24	SLC36A2 (ENSSSCG00000017086) #25	SLC36A3 (ENSSSCG00000038877) #26	GM2A (ENSSSCG00000017087) #27	CCDC69 (ENSSSCG00000040411) #28	ANXA6 (ENSSSCG00000017089) #29	TNIP1 (ENSSSCG00000017091) #30	GPX3 (ENSSSCG00000036438) #31	ENSSSCG00000048920	MARCHF6 (ENSSSCG00000017094)	CMBL (ENSSSCG00000039763)	CCT5 (ENSSSCG00000024126)	ATPSCKMT (ENSSSCG00000036387)	TAS2R1 (ENSSSCG00000053250)
Chacoan peccary	MODERN SPECIES	98												NMUR2 (ENSCWAG00000000985) #18	GLRA1 (ENSCWAG00000001007) #19	G3BP1 (ENSCWAG00000001046) #20	ENSCWAG00000001088	SPARC (ENSCWAG00000001139) #22	FAT2 (ENSCWAG00000001190) #23	SLC36A1 (ENSCWAG00000001249) #24	ENSCWAG00000001335	ENSCWAG00000001349	DRD1 (ENSCWAG00000001360)	TNPO1 (ENSCWAG00000001388)	ENSCWAG00000001435	ZNF366 (ENSCWAG00000001446)	PTCD2 (ENSCWAG00000001468)	MRPS27 (ENSCWAG00000001535)	MAP1B (ENSCWAG00000001564)	ENSCWAG00000001611	CARTPT (ENSCWAG00000001624)	MCCC2 (ENSCWAG00000001643)	ENSCWAG00000001684
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Cetacea	ANCESTRAL SPECIES	1	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00550000074801.g.a	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000157397.z	ENSGT00940000159047 #19	ENSGT00390000011365.a.c #20	ENSGT00390000005534.b.b.d	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00550000074801.g.a	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000157397.z	ENSGT00940000159047 #19	ENSGT00390000011365.a.c #20	ENSGT00390000005534.b.b.d	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00550000074801.g.a	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.c #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00550000074801.g.a.h.b	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a.k.b #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.c #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00550000074801.g.a.h.b	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a.k.b #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.c #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f.b	ENSGT00940000162678.d #32	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Beluga whale	MODERN SPECIES	34	CNOT8 (ENSDLEG00000005542) #9	FAXDC2 (ENSDLEG00000005531) #10	ENSDLEG00000005520	LARP1 (ENSDLEG00000005469) #11	ENSDLEG00000005457	HAND1 (ENSDLEG00000005450) #12	SAP30L (ENSDLEG00000005411) #13	GALNT10 (ENSDLEG00000005399) #14	MFAP3 (ENSDLEG00000005383) #15	ENSDLEG00000005353 #16	GRIA1 (ENSDLEG00000005310) #17	NMUR2 (ENSDLEG00000005287) #18	GLRA1 (ENSDLEG00000005226) #19	G3BP1 (ENSDLEG00000005198) #20	ENSDLEG00000005188	SPARC (ENSDLEG00000005179) #22	FAT2 (ENSDLEG00000005147) #23	SLC36A1 (ENSDLEG00000005136) #24	SLC36A2 (ENSDLEG00000005112) #25	SLC36A3 (ENSDLEG00000005103) #26	GM2A (ENSDLEG00000005097) #27	CCDC69 (ENSDLEG00000005083) #28	ANXA6 (ENSDLEG00000005049) #29	TNIP1 (ENSDLEG00000005032) #30	GPX3 (ENSDLEG00000005023) #31	ENSDLEG00000005013	ENSDLEG00000005001 #32	ZNF300 (ENSDLEG00000004994) #32	DCTN4 (ENSDLEG00000004947) #35	RBM22 (ENSDLEG00000004930) #36	MYOZ3 (ENSDLEG00000004899) #37
Narwhal	MODERN SPECIES	298	CNOT8 (ENSMMNG00015004088) #9	FAXDC2 (ENSMMNG00015004042) #10	ENSMMNG00015004023	LARP1 (ENSMMNG00015003970) #11	ENSMMNG00015003938	HAND1 (ENSMMNG00015003927) #12	SAP30L (ENSMMNG00015003902) #13	GALNT10 (ENSMMNG00015003839) #14	MFAP3 (ENSMMNG00015003766) #15	ENSMMNG00015003700 #16	GRIA1 (ENSMMNG00015003460) #17	NMUR2 (ENSMMNG00015003381) #18	GLRA1 (ENSMMNG00015003339) #19	ENSMMNG00015003307 #20	ENSMMNG00015003288	SPARC (ENSMMNG00015003268) #22	FAT2 (ENSMMNG00015003224) #23	SLC36A1 (ENSMMNG00015003123) #24	SLC36A2 (ENSMMNG00015003022) #25	GM2A (ENSMMNG00015002978) #27	CCDC69 (ENSMMNG00015002958) #28	ANXA6 (ENSMMNG00015002897) #29	TNIP1 (ENSMMNG00015002828) #30	GPX3 (ENSMMNG00015002789) #31	ENSMMNG00015002776 #32	ENSMMNG00015002764 #32	ENSMMNG00015002754 #32	ZNF300 (ENSMMNG00015002738) #32	DCTN4 (ENSMMNG00015002707) #35	RBM22 (ENSMMNG00015002682) #36	MYOZ3 (ENSMMNG00015002653) #37
Vaquita	MODERN SPECIES	14	GEMIN5 (ENSPSNG00000011574) #8	CNOT8 (ENSPSNG00000011658) #9	FAXDC2 (ENSPSNG00000011773) #10	ENSPSNG00000011953	LARP1 (ENSPSNG00000012002) #11	ENSPSNG00000012083	HAND1 (ENSPSNG00000012126) #12	SAP30L (ENSPSNG00000012174) #13	GALNT10 (ENSPSNG00000012293) #14	MFAP3 (ENSPSNG00000012395) #15	ENSPSNG00000012483 #16	GRIA1 (ENSPSNG00000012751) #17	NMUR2 (ENSPSNG00000013545) #18	GLRA1 (ENSPSNG00000013677) #19	ENSPSNG00000013936 #20	SPARC (ENSPSNG00000014078) #22	ENSPSNG00000014149	FAT2 (ENSPSNG00000014211) #23	SLC36A1 (ENSPSNG00000014497) #24	SLC36A2 (ENSPSNG00000014622) #25	GM2A (ENSPSNG00000014888) #27	CCDC69 (ENSPSNG00000014966) #28	ANXA6 (ENSPSNG00000015124) #29	TNIP1 (ENSPSNG00000015455) #30	GPX3 (ENSPSNG00000015660) #31	ENSPSNG00000015722 #32	ZNF300 (ENSPSNG00000015764) #32	SMIM3 (ENSPSNG00000015829) #34	ENSPSNG00000015868	DCTN4 (ENSPSNG00000015936) #35	RBM22 (ENSPSNG00000016138) #36
Dolphin	MODERN SPECIES	140																SPARC (ENSTTRG00000013719) #22	FAT2 (ENSTTRG00000013698) #23	SLC36A1 (ENSTTRG00000013690) #24
Sperm whale	MODERN SPECIES	19	GEMIN5 (ENSPCTG00005001900) #8	LARP1 (ENSPCTG00005001835) #11	FAXDC2 (ENSPCTG00005001788) #10	HAND1 (ENSPCTG00005001758) #12	SAP30L (ENSPCTG00005001734) #13	GALNT10 (ENSPCTG00005001705) #14	MFAP3 (ENSPCTG00005001678) #15	FAM114A2 (ENSPCTG00005001605) #16	GRIA1 (ENSPCTG00005001422) #17	NMUR2 (ENSPCTG00005001341) #18	ENSPCTG00005001320	GLRA1 (ENSPCTG00005001273) #19	G3BP1 (ENSPCTG00005001253) #20	ENSPCTG00005001232	ENSPCTG00005001221	SPARC (ENSPCTG00005001133) #22	FAT2 (ENSPCTG00005001069) #23	SLC36A2 (ENSPCTG00005001024) #25	SLC36A3 (ENSPCTG00005001001) #26	GM2A (ENSPCTG00005000980) #27	ENSPCTG00005000968	CCDC69 (ENSPCTG00005000950) #28	ENSPCTG00005000928	RBM22 (ENSPCTG00005000903) #36	DCTN4 (ENSPCTG00005000869) #35	ENSPCTG00005000853	ENSPCTG00005000840	SMIM3 (ENSPCTG00005000833) #34	ZNF300 (ENSPCTG00005000820) #32	ENSPCTG00005000808	ENSPCTG00005000790 #32
Blue whale	MODERN SPECIES	14	FAXDC2 (ENSBMSG00010003173) #10	LARP1 (ENSBMSG00010003146) #11	ENSBMSG00010003135	HAND1 (ENSBMSG00010003128) #12	SAP30L (ENSBMSG00010003112) #13	GALNT10 (ENSBMSG00010003097) #14	MFAP3 (ENSBMSG00010003083) #15	ENSBMSG00010003045 #16	GRIA1 (ENSBMSG00010002960) #17	NMUR2 (ENSBMSG00010002927) #18	ENSBMSG00010002920	GLRA1 (ENSBMSG00010002904) #19	ENSBMSG00010002891 #20	ENSBMSG00010002883	ENSBMSG00010002870	SPARC (ENSBMSG00010002853) #22	FAT2 (ENSBMSG00010002819) #23	SLC36A1 (ENSBMSG00010002669) #24	SLC36A2 (ENSBMSG00010002645) #25	SLC36A3 (ENSBMSG00010002627) #26	GM2A (ENSBMSG00010002617) #27	CCDC69 (ENSBMSG00010002604) #28	ANXA6 (ENSBMSG00010002529) #29	TNIP1 (ENSBMSG00010002447) #30	GPX3 (ENSBMSG00010002420) #31	ENSBMSG00010002404 #32	ZNF300 (ENSBMSG00010002389) #32	DCTN4 (ENSBMSG00010002338) #35	RBM22 (ENSBMSG00010002303) #36	MYOZ3 (ENSBMSG00010002287) #37	SYNPO (ENSBMSG00010002272)
Pecora	ANCESTRAL SPECIES		ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00940000163780.e	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Percora_a	ANCESTRAL SPECIES		ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Bovidae	ANCESTRAL SPECIES		ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Bos	ANCESTRAL SPECIES	3	ENSGT00950000183345	ENSGT00940000159577.n #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.b	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000157328.C #10	ENSGT00940000159577.n #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.b	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00940000162517.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00670000098165.E	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Domestic yak	MODERN SPECIES	27	ENSBGRG00000010396	GALNT10 (ENSBGRG00000010337) #14	ENSBGRG00000010322	ENSBGRG00000010312	MFAP3 (ENSBGRG00000010249) #15	FAM114A2 (ENSBGRG00000010100) #16	ENSBGRG00000010081	GRIA1 (ENSBGRG00000009927) #17	ENSBGRG00000009893	NMUR2 (ENSBGRG00000009768) #18	ENSBGRG00000009735	GLRA1 (ENSBGRG00000009521) #19	G3BP1 (ENSBGRG00000009329) #20	ATOX1 (ENSBGRG00000009256) #21	ENSBGRG00000009237	SPARC (ENSBGRG00000008993) #22	ENSBGRG00000008969	ENSBGRG00000008959	FAT2 (ENSBGRG00000008568) #23	SLC36A1 (ENSBGRG00000007583) #24	SLC36A2 (ENSBGRG00000007400) #25	SLC36A3 (ENSBGRG00000007244) #26	GM2A (ENSBGRG00000007223) #27	ENSBGRG00000007196	CCDC69 (ENSBGRG00000007157) #28	ANXA6 (ENSBGRG00000006833) #29	TNIP1 (ENSBGRG00000006723) #30	GPX3 (ENSBGRG00000006702) #31	ENSBGRG00000006690 #32	ENSBGRG00000006686 #32	ENSBGRG00000023130 #34
Wild yak	MODERN SPECIES	977												GLRA1 (ENSBMUG00000011837) #19	G3BP1 (ENSBMUG00000011817) #20	ENSBMUG00000011784	ENSBMUG00000011764	SPARC (ENSBMUG00000011750) #22	ENSBMUG00000011738	FAT2 (ENSBMUG00000011728) #23	SLC36A1 (ENSBMUG00000011677) #24
Bos_b	ANCESTRAL SPECIES	2	ENSGT00950000183345	ENSGT00940000159577.n #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.b.a.b.b.a.b	ENSGT00940000156690 #14	ENSGT00390000008903.g.a.a.a.b	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005022990 #10	ENSBIXG00005022922	LARP1 (ENSBIXG00005022895) #11	HAND1 (ENSBIXG00005022857) #12	SAP30L (ENSBIXG00005003903) #13	ENSBIXG00005022774	GALNT10 (ENSBIXG00005022744) #14	ENSBIXG00005003887	MFAP3 (ENSBIXG00005022679) #15	FAM114A2 (ENSBIXG00005003877) #16	GRIA1 (ENSBIXG00005022376) #17	NMUR2 (ENSBIXG00005022178) #18	GLRA1 (ENSBIXG00005022149) #19	G3BP1 (ENSBIXG00005022125) #20	ENSBIXG00005022056	SPARC (ENSBIXG00005022027) #22	ENSBIXG00005021959	FAT2 (ENSBIXG00005003699) #23	ENSBIXG00005003692	SLC36A1 (ENSBIXG00005021878) #24	SLC36A2 (ENSBIXG00005006047) #25	SLC36A3 (ENSBIXG00005003667) #26	GM2A (ENSBIXG00005021708) #27	CCDC69 (ENSBIXG00005021685) #28	ANXA6 (ENSBIXG00005021615) #29	TNIP1 (ENSBIXG00005007676) #30	GPX3 (ENSBIXG00005021147) #31	ZNF300 (ENSBIXG00005003566) #32	SMIM3 (ENSBIXG00005006042) #34	DCTN4 (ENSBIXG00005021054) #35	RBM22 (ENSBIXG00005020879) #36
Cow	MODERN SPECIES	26	CNOT8 (ENSBTAG00000012086) #9	ENSBTAG00000048681	LARP1 (ENSBTAG00000008443) #11	HAND1 (ENSBTAG00000002335) #12	SAP30L (ENSBTAG00000004000) #13	GALNT10 (ENSBTAG00000034113) #14	SMIM15 (ENSBTAG00000048033)	MFAP3 (ENSBTAG00000017079) #15	FAM114A2 (ENSBTAG00000017078) #16	GRIA1 (ENSBTAG00000005800) #17	NMUR2 (ENSBTAG00000011131) #18	GLRA1 (ENSBTAG00000014395) #19	G3BP1 (ENSBTAG00000020309) #20	ATOX1 (ENSBTAG00000008340)	ENSBTAG00000054940	SPARC (ENSBTAG00000014835) #22	ENSBTAG00000053965	FAT2 (ENSBTAG00000003498) #23	SLC36A1 (ENSBTAG00000016094) #24	SLC36A2 (ENSBTAG00000020809) #25	SLC36A3 (ENSBTAG00000006624) #26	GM2A (ENSBTAG00000021829) #27	CCDC69 (ENSBTAG00000002834) #28	ANXA6 (ENSBTAG00000014809) #29	TNIP1 (ENSBTAG00000012671) #30	GPX3 (ENSBTAG00000043553) #31	ZNF300 (ENSBTAG00000025124) #32	ENSBTAG00000052241	SMIM3 (ENSBTAG00000010487) #34	DCTN4 (ENSBTAG00000015625) #35	RBM22 (ENSBTAG00000030366) #36
American bison	MODERN SPECIES	3206										NMUR2 (ENSBBBG00000022378) #18	ENSBBBG00000022386	GLRA1 (ENSBBBG00000022402) #19	G3BP1 (ENSBBBG00000022442) #20	ATOX1 (ENSBBBG00000022460) #21	ENSBBBG00000006924	SPARC (ENSBBBG00000022477) #22	FAT2 (ENSBBBG00000022537) #23	SLC36A1 (ENSBBBG00000022635) #24	SLC36A2 (ENSBBBG00000022667) #25	SLC36A3 (ENSBBBG00000005970) #26	GM2A (ENSBBBG00000022694) #27	CCDC69 (ENSBBBG00000005977) #28	ANXA6 (ENSBBBG00000022863) #29	TNIP1 (ENSBBBG00000023012) #30	GPX3 (ENSBBBG00000023039) #31	ZNF300 (ENSBBBG00000023051) #32	SMIM3 (ENSBBBG00000007286) #34	DCTN4 (ENSBBBG00000023126) #35	RBM22 (ENSBBBG00000000491) #36	MYOZ3 (ENSBBBG00000000464) #37	SYNPO (ENSBBBG00000000444)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a.c #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.e	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770.n #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020019710 #10	LARP1 (ENSOARG00020019445) #11	HAND1 (ENSOARG00020019349) #12	SAP30L (ENSOARG00020019252) #13	GALNT10 (ENSOARG00020018437) #14	MFAP3 (ENSOARG00020018373) #15	FAM114A2 (ENSOARG00020018007) #16	GRIA1 (ENSOARG00020017612) #17	ENSOARG00020017570	ENSOARG00020017549	NMUR2 (ENSOARG00020017502) #18	ENSOARG00020017487	GLRA1 (ENSOARG00020017407) #19	ENSOARG00020017316 #20	ATOX1 (ENSOARG00020017245)	SPARC (ENSOARG00020017166) #22	FAT2 (ENSOARG00020016340) #23	SLC36A1 (ENSOARG00020016094) #24	SLC36A2 (ENSOARG00020015753) #25	CCDC69 (ENSOARG00020015595) #28	ANXA6 (ENSOARG00020014885) #29	TNIP1 (ENSOARG00020014574) #30	GPX3 (ENSOARG00020014488) #31	ZNF300 (ENSOARG00020014457) #32	SMIM3 (ENSOARG00020014435) #34	DCTN4 (ENSOARG00020013939) #35	RBM22 (ENSOARG00020013787) #36	MYOZ3 (ENSOARG00020013724) #37	SYNPO (ENSOARG00020013674)	NDST1 (ENSOARG00020013489)	ENSOARG00020013429
Goat	MODERN SPECIES	26	FAXDC2 (ENSCHIG00000003558) #10	ENSCHIG00000020455	LARP1 (ENSCHIG00000014414) #11	HAND1 (ENSCHIG00000002958) #12	ENSCHIG00000011850 #13	GALNT10 (ENSCHIG00000017035) #14	ENSCHIG00000024888	MFAP3 (ENSCHIG00000019306) #15	FAM114A2 (ENSCHIG00000002961) #16	GRIA1 (ENSCHIG00000014013) #17	NMUR2 (ENSCHIG00000025403) #18	ENSCHIG00000012822	GLRA1 (ENSCHIG00000017210) #19	G3BP1 (ENSCHIG00000015936) #20	ENSCHIG00000011535	SPARC (ENSCHIG00000020972) #22	FAT2 (ENSCHIG00000008233) #23	SLC36A1 (ENSCHIG00000012262) #24	SLC36A2 (ENSCHIG00000013721) #25	SLC36A3 (ENSCHIG00000024700) #26	GM2A (ENSCHIG00000026255) #27	CCDC69 (ENSCHIG00000013748) #28	ENSCHIG00000016366 #29	TNIP1 (ENSCHIG00000024962) #30	GPX3 (ENSCHIG00000022658) #31	ZNF300 (ENSCHIG00000016822) #32	SMIM3 (ENSCHIG00000009961) #34	DCTN4 (ENSCHIG00000023539) #35	RBM22 (ENSCHIG00000015561) #36	MYOZ3 (ENSCHIG00000027179) #37	SYNPO (ENSCHIG00000024003)
Siberian musk deer	MODERN SPECIES	64	ENSMMSG00000003559	CNOT8 (ENSMMSG00000003528) #9	FAXDC2 (ENSMMSG00000003482) #10	LARP1 (ENSMMSG00000003430) #11	HAND1 (ENSMMSG00000003405) #12	SAP30L (ENSMMSG00000003388) #13	GALNT10 (ENSMMSG00000003282) #14	ENSMMSG00000003251 #15	FAM114A2 (ENSMMSG00000003214) #16	GRIA1 (ENSMMSG00000003129) #17	NMUR2 (ENSMMSG00000003100) #18	GLRA1 (ENSMMSG00000003073) #19	ENSMMSG00000003041 #20	ENSMMSG00000003014	ENSMMSG00000003004	SPARC (ENSMMSG00000002983) #22	FAT2 (ENSMMSG00000002934) #23	SLC36A1 (ENSMMSG00000002888) #24	SLC36A2 (ENSMMSG00000002854) #25	SLC36A3 (ENSMMSG00000002829) #26	GM2A (ENSMMSG00000002811) #27	CCDC69 (ENSMMSG00000002788) #28	ANXA6 (ENSMMSG00000002639) #29	TNIP1 (ENSMMSG00000002511) #30	GPX3 (ENSMMSG00000002469) #31	ENSMMSG00000002441	ZNF300 (ENSMMSG00000002410) #32	SMIM3 (ENSMMSG00000002397) #34	DCTN4 (ENSMMSG00000002358) #35	RBM22 (ENSMMSG00000002304) #36	MYOZ3 (ENSMMSG00000002283) #37
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000012741	ENSCHYG00000012708	LARP1 (ENSCHYG00000012618) #11	ENSCHYG00000012584	HAND1 (ENSCHYG00000012541) #12	ENSCHYG00000012437 #13	GALNT10 (ENSCHYG00000012158) #14	MFAP3 (ENSCHYG00000012108) #15	FAM114A2 (ENSCHYG00000011772) #16	GRIA1 (ENSCHYG00000011374) #17	NMUR2 (ENSCHYG00000011292) #18	GLRA1 (ENSCHYG00000011170) #19	G3BP1 (ENSCHYG00000011097) #20	ENSCHYG00000011020 #21	ENSCHYG00000010996	SPARC (ENSCHYG00000010867) #22	FAT2 (ENSCHYG00000010698) #23	SLC36A1 (ENSCHYG00000010573) #24	SLC36A2 (ENSCHYG00000010468) #25	ENSCHYG00000010422	SLC36A3 (ENSCHYG00000010361) #26	GM2A (ENSCHYG00000010332) #27	CCDC69 (ENSCHYG00000010276) #28	ANXA6 (ENSCHYG00000009608) #29	TNIP1 (ENSCHYG00000009276) #30	GPX3 (ENSCHYG00000009216) #31	ENSCHYG00000009177	ENSCHYG00000006075	ZNF300 (ENSCHYG00000006031) #32	SMIM3 (ENSCHYG00000006010) #34	DCTN4 (ENSCHYG00000005906) #35
Camelidae	ANCESTRAL SPECIES	1	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00910000147868	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00840000130854	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Arabian camel	MODERN SPECIES	22	CNOT8 (ENSCDRG00005000944) #9	FAXDC2 (ENSCDRG00005000982) #10	LARP1 (ENSCDRG00005001014) #11	HAND1 (ENSCDRG00005001057) #12	SAP30L (ENSCDRG00005001071) #13	GALNT10 (ENSCDRG00005001110) #14	MFAP3 (ENSCDRG00005001182) #15	ENSCDRG00005001194 #16	GRIA1 (ENSCDRG00005001234) #17	NMUR2 (ENSCDRG00005001477) #18	ENSCDRG00005001496	GLRA1 (ENSCDRG00005001506) #19	G3BP1 (ENSCDRG00005001514) #20	ENSCDRG00005001526	ENSCDRG00005001536	SPARC (ENSCDRG00005001545) #22	SLC36A1 (ENSCDRG00005001570) #24	SLC36A2 (ENSCDRG00005001614) #25	SLC36A3 (ENSCDRG00005001650) #26	GM2A (ENSCDRG00005001677) #27	CCDC69 (ENSCDRG00005001694) #28	ANXA6 (ENSCDRG00005001744) #29	TNIP1 (ENSCDRG00005001911) #30	GPX3 (ENSCDRG00005001880) #31	ZNF300 (ENSCDRG00005001937) #32	SMIM3 (ENSCDRG00005001961) #34	RBM22 (ENSCDRG00005001978) #36	MYOZ3 (ENSCDRG00005002029) #37	SYNPO (ENSCDRG00005002038)	NDST1 (ENSCDRG00005002048)	RPS14 (ENSCDRG00005002058)
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00950000185482	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00950000185482	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Felidae	ANCESTRAL SPECIES	6	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.g #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.g #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Tiger	MODERN SPECIES	422													GLRA1 (ENSPTIG00000016860) #19	G3BP1 (ENSPTIG00000013868) #20	ATOX1 (ENSPTIG00000012701) #21	SPARC (ENSPTIG00000012238) #22	FAT2 (ENSPTIG00000009798) #23	SLC36A1 (ENSPTIG00000000380) #24	SLC36A2 (ENSPTIG00000018593) #25	SLC36A3 (ENSPTIG00000018400) #26	GM2A (ENSPTIG00000018148) #27	CCDC69 (ENSPTIG00000017398) #28	ANXA6 (ENSPTIG00000010886) #29	TNIP1 (ENSPTIG00000014378) #30	GPX3 (ENSPTIG00000012289) #31	ZNF300 (ENSPTIG00000011038) #32	SMIM3 (ENSPTIG00000006768) #34	DCTN4 (ENSPTIG00000007333) #35	RBM22 (ENSPTIG00000004453) #36	MYOZ3 (ENSPTIG00000019243) #37	SYNPO (ENSPTIG00000018778)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT01090000260100.A.l	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.g #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000182890.D.c.b.a.b.b.b.d.f	ENSGT00940000162678.d #32	ENSGT00390000009443.i #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
leopard	MODERN SPECIES	44	CNOT8 (ENSPPRG00000007589) #9	FAXDC2 (ENSPPRG00000008823) #10	ENSPPRG00000020529	LARP1 (ENSPPRG00000009780) #11	HAND1 (ENSPPRG00000010229) #12	SAP30L (ENSPPRG00000010604) #13	GALNT10 (ENSPPRG00000013465) #14	MFAP3 (ENSPPRG00000013801) #15	FAM114A2 (ENSPPRG00000021677) #16	GRIA1 (ENSPPRG00000000764) #17	NMUR2 (ENSPPRG00000002057) #18	ENSPPRG00000002590	GLRA1 (ENSPPRG00000002733) #19	G3BP1 (ENSPPRG00000002960) #20	ENSPPRG00000003301 #21	SPARC (ENSPPRG00000003950) #22	FAT2 (ENSPPRG00000004934) #23	SLC36A1 (ENSPPRG00000008839) #24	SLC36A2 (ENSPPRG00000009957) #25	SLC36A3 (ENSPPRG00000010329) #26	GM2A (ENSPPRG00000010718) #27	CCDC69 (ENSPPRG00000011070) #28	ANXA6 (ENSPPRG00000017597) #29	TNIP1 (ENSPPRG00000005176) #30	GPX3 (ENSPPRG00000006416) #31	ZNF300 (ENSPPRG00000008915) #32	ENSPPRG00000014899 #34	DCTN4 (ENSPPRG00000010427) #35	RBM22 (ENSPPRG00000011577) #36	MYOZ3 (ENSPPRG00000012072) #37	SYNPO (ENSPPRG00000012666)
lion	MODERN SPECIES		FAXDC2 (ENSPLOG00000001182) #10	ENSPLOG00000001148	LARP1 (ENSPLOG00000001096) #11	HAND1 (ENSPLOG00000001058) #12	SAP30L (ENSPLOG00000001027) #13	GALNT10 (ENSPLOG00000000962) #14	MFAP3 (ENSPLOG00000000917) #15	FAM114A2 (ENSPLOG00000000872) #16	GRIA1 (ENSPLOG00000000743) #17	NMUR2 (ENSPLOG00000000651) #18	ENSPLOG00000000631	GLRA1 (ENSPLOG00000000546) #19	G3BP1 (ENSPLOG00000000488) #20	ENSPLOG00000000467 #21	ENSPLOG00000000450	SPARC (ENSPLOG00000000436) #22	FAT2 (ENSPLOG00000000395) #23	SLC36A1 (ENSPLOG00000000354) #24	SLC36A2 (ENSPLOG00000000323) #25	SLC36A3 (ENSPLOG00000000288) #26	GM2A (ENSPLOG00000000268) #27	CCDC69 (ENSPLOG00000000256) #28	ANXA6 (ENSPLOG00000000151) #29	TNIP1 (ENSPLOG00000000091) #30	GPX3 (ENSPLOG00000000075) #31	ENSPLOG00000000067	ENSPLOG00000000048 #32	ZNF300 (ENSPLOG00000000038) #32	ENSPLOG00000003603 #34	DCTN4 (ENSPLOG00000003575) #35	RBM22 (ENSPLOG00000003559) #36
Cat	MODERN SPECIES		MRPL22 (ENSFCAG00000036527) #7	GEMIN5 (ENSFCAG00000000595) #8	CNOT8 (ENSFCAG00000000594) #9	FAXDC2 (ENSFCAG00000000593) #10	LARP1 (ENSFCAG00000000592) #11	HAND1 (ENSFCAG00000014986) #12	SAP30L (ENSFCAG00000014985) #13	GALNT10 (ENSFCAG00000014984) #14	MFAP3 (ENSFCAG00000028091) #15	FAM114A2 (ENSFCAG00000023708) #16	GRIA1 (ENSFCAG00000005223) #17	NMUR2 (ENSFCAG00000012203) #18	GLRA1 (ENSFCAG00000019295) #19	G3BP1 (ENSFCAG00000006019) #20	ATOX1 (ENSFCAG00000006018) #21	SPARC (ENSFCAG00000006015) #22	ENSFCAG00000047333	FAT2 (ENSFCAG00000023532) #23	SLC36A1 (ENSFCAG00000012885) #24	SLC36A3 (ENSFCAG00000036333) #26	GM2A (ENSFCAG00000012881) #27	CCDC69 (ENSFCAG00000036060) #28	ENSFCAG00000047708	ANXA6 (ENSFCAG00000012878) #29	TNIP1 (ENSFCAG00000012877) #30	GPX3 (ENSFCAG00000012876) #31	ENSFCAG00000048045	ZNF300 (ENSFCAG00000022219) #32	SMIM3 (ENSFCAG00000030067) #34	DCTN4 (ENSFCAG00000013869) #35	RBM22 (ENSFCAG00000018845) #36
Caniformia	ANCESTRAL SPECIES	5	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00950000185482	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Canidae	ANCESTRAL SPECIES	7	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a.f #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.e.b.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154586.m.b	ENSGT00980000203244	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a.f #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517.e.b.a #21	ENSGT00950000185482	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000154586.m.b	ENSGT00980000203244	ENSGT00940000163029.f	ENSGT00940000163029.e	ENSGT00940000162678.d.p.a #32	ENSGT00940000162678.d.q #32
Dog	MODERN SPECIES	32	CNOT8 (ENSCAFG00845004828) #9	FAXDC2 (ENSCAFG00845004857) #10	ENSCAFG00845004883	LARP1 (ENSCAFG00845004900) #11	ENSCAFG00845004937	HAND1 (ENSCAFG00845004947) #12	SAP30L (ENSCAFG00845004964) #13	GALNT10 (ENSCAFG00845004992) #14	MFAP3 (ENSCAFG00845005006) #15	FAM114A2 (ENSCAFG00845005016) #16	GRIA1 (ENSCAFG00845005055) #17	NMUR2 (ENSCAFG00845005069) #18	GLRA1 (ENSCAFG00845005085) #19	G3BP1 (ENSCAFG00845005119) #20	ATOX1 (ENSCAFG00845005141) #21	SPARC (ENSCAFG00845005166) #22	ENSCAFG00845005232	FAT2 (ENSCAFG00845005247) #23	SLC36A1 (ENSCAFG00845005291) #24	SLC36A2 (ENSCAFG00845005365) #25	GM2A (ENSCAFG00845005428) #27	CCDC69 (ENSCAFG00845005451) #28	ANXA6 (ENSCAFG00845005581) #29	TNIP1 (ENSCAFG00845005879) #30	GPX3 (ENSCAFG00845005989) #31	ENSCAFG00845006013	ENSCAFG00845006048	ENSCAFG00845006066	ENSCAFG00845006081	ENSCAFG00845006115 #32	ENSCAFG00845006169 #32
Dingo	MODERN SPECIES	324	ENSCAFG00020023867	LARP1 (ENSCAFG00020023860) #11	HAND1 (ENSCAFG00020023848) #12	SAP30L (ENSCAFG00020023847) #13	ENSCAFG00020023846	GALNT10 (ENSCAFG00020023844) #14	MFAP3 (ENSCAFG00020023843) #15	ENSCAFG00020023829 #16	GRIA1 (ENSCAFG00020023810) #17	NMUR2 (ENSCAFG00020023806) #18	ENSCAFG00020023805	GLRA1 (ENSCAFG00020023770) #19	G3BP1 (ENSCAFG00020023763) #20	ENSCAFG00020023761 #21	ENSCAFG00020023759	SPARC (ENSCAFG00020023758) #22	FAT2 (ENSCAFG00020023748) #23	SLC36A1 (ENSCAFG00020023736) #24	SLC36A2 (ENSCAFG00020023730) #25	SLC36A3 (ENSCAFG00020023708) #26	GM2A (ENSCAFG00020023706) #27	ENSCAFG00020023705 #28	ANXA6 (ENSCAFG00020023702) #29	TNIP1 (ENSCAFG00020023698) #30	GPX3 (ENSCAFG00020023697) #31	ENSCAFG00020023691	ENSCAFG00020023690	ENSCAFG00020023688	ENSCAFG00020023686 #32	ZNF300 (ENSCAFG00020023683) #32	SMIM3 (ENSCAFG00020023681) #34
Red fox	MODERN SPECIES	2	FAXDC2 (ENSVVUG00000004639) #10	ENSVVUG00000004640	LARP1 (ENSVVUG00000004644) #11	HAND1 (ENSVVUG00000004676) #12	ENSVVUG00000004680 #13	GALNT10 (ENSVVUG00000004691) #14	ENSVVUG00000004696	MFAP3 (ENSVVUG00000004700) #15	ENSVVUG00000004715 #16	GRIA1 (ENSVVUG00000004888) #17	NMUR2 (ENSVVUG00000005262) #18	GLRA1 (ENSVVUG00000005306) #19	G3BP1 (ENSVVUG00000005396) #20	ENSVVUG00000005568 #21	ENSVVUG00000005574	SPARC (ENSVVUG00000005577) #22	FAT2 (ENSVVUG00000005651) #23	SLC36A1 (ENSVVUG00000006873) #24	SLC36A2 (ENSVVUG00000006880) #25	SLC36A3 (ENSVVUG00000006903) #26	GM2A (ENSVVUG00000006924) #27	CCDC69 (ENSVVUG00000006931) #28	ANXA6 (ENSVVUG00000007007) #29	TNIP1 (ENSVVUG00000007038) #30	GPX3 (ENSVVUG00000007074) #31	ENSVVUG00000007085	ENSVVUG00000007096	ZNF300 (ENSVVUG00000007103) #32	ZNF300 (ENSVVUG00000007117) #32	SMIM3 (ENSVVUG00000007178) #34	DCTN4 (ENSVVUG00000007183) #35
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00950000185765	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Mustelinae	ANCESTRAL SPECIES	13	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT00940000153511.a.n.a	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000162517 #21	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00950000185765	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Ferret	MODERN SPECIES	162	CNOT8 (ENSMPUG00000013552) #9	FAXDC2 (ENSMPUG00000013555) #10	LARP1 (ENSMPUG00000013564) #11	HAND1 (ENSMPUG00000013570) #12	SAP30L (ENSMPUG00000013575) #13	ENSMPUG00000019318	GALNT10 (ENSMPUG00000013590) #14	MFAP3 (ENSMPUG00000013596) #15	FAM114A2 (ENSMPUG00000013600) #16	GRIA1 (ENSMPUG00000013604) #17	ENSMPUG00000013617	NMUR2 (ENSMPUG00000013636) #18	GLRA1 (ENSMPUG00000013655) #19	G3BP1 (ENSMPUG00000013661) #20	ATOX1 (ENSMPUG00000013666) #21	SPARC (ENSMPUG00000013670) #22	FAT2 (ENSMPUG00000013674) #23	SLC36A1 (ENSMPUG00000013678) #24	SLC36A2 (ENSMPUG00000013680) #25	SLC36A3 (ENSMPUG00000013683) #26	GM2A (ENSMPUG00000013687) #27	CCDC69 (ENSMPUG00000013690) #28	ANXA6 (ENSMPUG00000013696) #29	TNIP1 (ENSMPUG00000013705) #30	GPX3 (ENSMPUG00000013709) #31	ENSMPUG00000013720	ENSMPUG00000013723 #32	ZNF300 (ENSMPUG00000013725) #32	SMIM3 (ENSMPUG00000019319) #34	DCTN4 (ENSMPUG00000013727) #35	RBM22 (ENSMPUG00000013760) #36
American mink	MODERN SPECIES	18	CNOT8 (ENSNVIG00000019737) #9	FAXDC2 (ENSNVIG00000019791) #10	LARP1 (ENSNVIG00000019836) #11	HAND1 (ENSNVIG00000019849) #12	SAP30L (ENSNVIG00000019864) #13	GALNT10 (ENSNVIG00000019902) #14	MFAP3 (ENSNVIG00000019949) #15	FAM114A2 (ENSNVIG00000019997) #16	GRIA1 (ENSNVIG00000020177) #17	ENSNVIG00000020301	ENSNVIG00000020318	NMUR2 (ENSNVIG00000020322) #18	GLRA1 (ENSNVIG00000020349) #19	G3BP1 (ENSNVIG00000020368) #20	ATOX1 (ENSNVIG00000020412) #21	SPARC (ENSNVIG00000020426) #22	FAT2 (ENSNVIG00000020441) #23	SLC36A1 (ENSNVIG00000020485) #24	SLC36A2 (ENSNVIG00000020528) #25	SLC36A3 (ENSNVIG00000020564) #26	GM2A (ENSNVIG00000020588) #27	CCD69 (ENSNVIG00000020608) #28	ANXA6 (ENSNVIG00000020630) #29	TNIP1 (ENSNVIG00000020776) #30	GPX3 (ENSNVIG00000020987) #31	ENSNVIG00000021005 #32	ZNF300 (ENSNVIG00000021017) #32	ENSNVIG00000021034	SMIM3 (ENSNVIG00000021036) #34	DCTN4 (ENSNVIG00000021045) #35	RBM22 (ENSNVIG00000021075) #36
Ursidae	DUPLICATION
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00510000046787.e.b.a.a #22
Giant Panda	MODERN SPECIES	1904																ENSAMEG00000027170 #22
Ursidae	ANCESTRAL SPECIES	24	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.a.a	ENSGT00940000163780.a.b	ENSGT00510000046787.e.b.a.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770.l #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00950000185765	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Ursus	ANCESTRAL SPECIES	10	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00950000186222	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780.a.a	ENSGT00510000046787.e.b.a.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770.l #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00950000185765	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
American black bear	MODERN SPECIES	5318																SPARC (ENSUAMG00000007794) #22	FAT2 (ENSUAMG00000007791) #23
Polar bear	MODERN SPECIES	179	CNOT8 (ENSUMAG00000002910) #9	FAXDC2 (ENSUMAG00000002913) #10	LARP1 (ENSUMAG00000002934) #11	ENSUMAG00000003053 #12	SAP30L (ENSUMAG00000003056) #13	ENSUMAG00000003059	GALNT10 (ENSUMAG00000003064) #14	MFAP3 (ENSUMAG00000003088) #15	ENSUMAG00000003112 #16	GRIA1 (ENSUMAG00000003146) #17	NMUR2 (ENSUMAG00000003212) #18	ENSUMAG00000003220	GLRA1 (ENSUMAG00000003228) #19	G3BP1 (ENSUMAG00000003295) #20	ENSUMAG00000003302	SPARC (ENSUMAG00000003309) #22	FAT2 (ENSUMAG00000003325) #23	SLC36A1 (ENSUMAG00000003360) #24	SLC36A2 (ENSUMAG00000003368) #25	SLC36A3 (ENSUMAG00000003399) #26	GM2A (ENSUMAG00000003513) #27	CCDC69 (ENSUMAG00000003524) #28	ANXA6 (ENSUMAG00000003545) #29	TNIP1 (ENSUMAG00000003564) #30	GPX3 (ENSUMAG00000003587) #31	ENSUMAG00000003601 #32	ENSUMAG00000003605 #32	ZNF300 (ENSUMAG00000003611) #32	ENSUMAG00000003622	SMIM3 (ENSUMAG00000003625) #34	DCTN4 (ENSUMAG00000003638) #35
Giant Panda	MODERN SPECIES	13	MRPL22 (ENSAMEG00000023722) #7	GEMIN5 (ENSAMEG00000016618) #8	CNOT8 (ENSAMEG00000016651) #9	FAXDC2 (ENSAMEG00000016665) #10	LARP1 (ENSAMEG00000016673) #11	HAND1 (ENSAMEG00000024671) #12	GALNT10 (ENSAMEG00000016701) #14	MFAP3 (ENSAMEG00000004047) #15	FAM114A2 (ENSAMEG00000004029) #16	GRIA1 (ENSAMEG00000014413) #17	ENSAMEG00000024739	NMUR2 (ENSAMEG00000007782) #18	GLRA1 (ENSAMEG00000007792) #19	G3BP1 (ENSAMEG00000007833) #20	ENSAMEG00000030472	SPARC (ENSAMEG00000007909) #22	FAT2 (ENSAMEG00000007976) #23	SLC36A1 (ENSAMEG00000008049) #24	SLC36A2 (ENSAMEG00000008093) #25	SLC36A3 (ENSAMEG00000008126) #26	GM2A (ENSAMEG00000008134) #27	CCDC69 (ENSAMEG00000008138) #28	ANXA6 (ENSAMEG00000008161) #29	TNIP1 (ENSAMEG00000008256) #30	GPX3 (ENSAMEG00000008334) #31	ENSAMEG00000008342	ENSAMEG00000023482 #32	ZNF300 (ENSAMEG00000004509) #32	SMIM3 (ENSAMEG00000020120) #34	DCTN4 (ENSAMEG00000004513) #35	RBM22 (ENSAMEG00000004544) #36
Ursidae	ANCESTRAL SPECIES																	ENSGT00510000046787.e.b.b #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	935																ENSAMEG00000027813 #22
Giant Panda	MODERN SPECIES	859																ENSAMEG00000027835 #22
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Equus	ANCESTRAL SPECIES	6	ENSGT01090000261928.b.b.b	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.c.b #32	ENSGT00940000162678.d.fb #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Donkey	MODERN SPECIES	29	GEMIN5 (ENSEASG00005001026) #8	ENSEASG00005030181	CNOT8 (ENSEASG00005001043) #9	FAXDC2 (ENSEASG00005001054) #10	ENSEASG00005001061	LARP1 (ENSEASG00005001070) #11	HAND1 (ENSEASG00005001085) #12	SAP30L (ENSEASG00005037967) #13	GALNT10 (ENSEASG00005001101) #14	MFAP3 (ENSEASG00005001108) #15	FAM114A2 (ENSEASG00005001111) #16	GRIA1 (ENSEASG00005001130) #17	NMUR2 (ENSEASG00005001147) #18	GLRA1 (ENSEASG00005001178) #19	G3BP1 (ENSEASG00005001232) #20	SPARC (ENSEASG00005001241) #22	FAT2 (ENSEASG00005001252) #23	SLC36A1 (ENSEASG00005001369) #24	SLC36A2 (ENSEASG00005001376) #25	SLC36A3 (ENSEASG00005001395) #26	ENSEASG00005001425 #27	CCDC69 (ENSEASG00005001426) #28	ANXA6 (ENSEASG00005001496) #29	TNIP1 (ENSEASG00005002006) #30	GPX3 (ENSEASG00005035825) #31	ENSEASG00005033941	ENSEASG00005002671 #32	ZNF300 (ENSEASG00005023628) #32	SMIM3 (ENSEASG00005002674) #34	DCTN4 (ENSEASG00005002678) #35	RBM22 (ENSEASG00005002681) #36
Horse	MODERN SPECIES	5	ENSECAG00000055011	GEMIN5 (ENSECAG00000020479) #8	CNOT8 (ENSECAG00000013294) #9	ENSECAG00000054688	FAXDC2 (ENSECAG00000014962) #10	LARP1 (ENSECAG00000017002) #11	HAND1 (ENSECAG00000005327) #12	GALNT10 (ENSECAG00000006979) #14	MFAP3 (ENSECAG00000017960) #15	FAM114A2 (ENSECAG00000016187) #16	GRIA1 (ENSECAG00000020849) #17	NMUR2 (ENSECAG00000020285) #18	GLRA1 (ENSECAG00000022523) #19	G3BP1 (ENSECAG00000003368) #20	ENSECAG00000044027	SPARC (ENSECAG00000013874) #22	FAT2 (ENSECAG00000023329) #23	ENSECAG00000028849 #24	SLC36A1 (ENSECAG00000025152) #24	SLC36A2 (ENSECAG00000011961) #25	SLC36A3 (ENSECAG00000018019) #26	GM2A (ENSECAG00000020587) #27	CCDC69 (ENSECAG00000022291) #28	ANXA6 (ENSECAG00000022500) #29	TNIP1 (ENSECAG00000010862) #30	GPX3 (ENSECAG00000042952) #31	ENSECAG00000042718 #32	ZNF300 (ENSECAG00000008211) #32	DCTN4 (ENSECAG00000011275) #35	RBM22 (ENSECAG00000014940) #36	MYOZ3 (ENSECAG00000015102) #37
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000183345	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678.d #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Greater horseshoe bat	MODERN SPECIES	16	GEMIN5 (ENSRFEG00010016457) #8	CNOT8 (ENSRFEG00010016294) #9	FAXDC2 (ENSRFEG00010016139) #10	ENSRFEG00010016127	LARP1 (ENSRFEG00010016026) #11	HAND1 (ENSRFEG00010015955) #12	SAP30L (ENSRFEG00010015805) #13	GALNT10 (ENSRFEG00010015684) #14	MFAP3 (ENSRFEG00010015622) #15	FAM114A2 (ENSRFEG00010015177) #16	GRIA1 (ENSRFEG00010014883) #17	NMUR2 (ENSRFEG00010014779) #18	GLRA1 (ENSRFEG00010014730) #19	G3BP1 (ENSRFEG00010014658) #20	ENSRFEG00010014581 #21	SPARC (ENSRFEG00010014523) #22	FAT2 (ENSRFEG00010014461) #23	SLC36A1 (ENSRFEG00010014375) #24	SLC36A2 (ENSRFEG00010014284) #25	GM2A (ENSRFEG00010014263) #27	CCDC69 (ENSRFEG00010014214) #28	ANXA6 (ENSRFEG00010014025) #29	TNIP1 (ENSRFEG00010013753) #30	GPX3 (ENSRFEG00010013613) #31	ENSRFEG00010013580 #32	ENSRFEG00010013504 #32	DCTN4 (ENSRFEG00010013385) #35	RBM22 (ENSRFEG00010013329) #36	MYOZ3 (ENSRFEG00010013242) #37	SYNPO (ENSRFEG00010014778)	NDST1 (ENSRFEG00010014641)
Microbat	MODERN SPECIES	993	MRPL22 (ENSMLUG00000016853) #7	GEMIN5 (ENSMLUG00000016836) #8	CNOT8 (ENSMLUG00000016833) #9	FAXDC2 (ENSMLUG00000002623) #10	LARP1 (ENSMLUG00000002608) #11	HAND1 (ENSMLUG00000008901) #12	SAP30L (ENSMLUG00000008911) #13	GALNT10 (ENSMLUG00000009097) #14	MFAP3 (ENSMLUG00000009094) #15	FAM114A2 (ENSMLUG00000015138) #16	GRIA1 (ENSMLUG00000002344) #17	NMUR2 (ENSMLUG00000005055) #18	GLRA1 (ENSMLUG00000001588) #19	G3BP1 (ENSMLUG00000001581) #20	ENSMLUG00000009741	SPARC (ENSMLUG00000003628) #22	FAT2 (ENSMLUG00000003620) #23	SLC36A1 (ENSMLUG00000003614) #24	SLC36A2 (ENSMLUG00000003225) #25	SLC36A3 (ENSMLUG00000003218) #26	GM2A (ENSMLUG00000003215) #27	ENSMLUG00000027448	CCDC69 (ENSMLUG00000013111) #28	ENSMLUG00000022717	ANXA6 (ENSMLUG00000013100) #29	TNIP1 (ENSMLUG00000009310) #30	GPX3 (ENSMLUG00000009296) #31	ENSMLUG00000009277 #32	SMIM3 (ENSMLUG00000029590) #34	DCTN4 (ENSMLUG00000009244) #35	ENSMLUG00000009040 #36
Megabat	MODERN SPECIES	3313																SPARC (ENSPVAG00000008084) #22	FAT2 (ENSPVAG00000008080) #23	SLC36A1 (ENSPVAG00000008078) #24	SLC36A2 (ENSPVAG00000008076) #25	SLC36A3 (ENSPVAG00000008073) #26	GM2A (ENSPVAG00000008071) #27	CCDC69 (ENSPVAG00000008068) #28	ANXA6 (ENSPVAG00000008065) #29	TNIP1 (ENSPVAG00000008063) #30	GPX3 (ENSPVAG00000008061) #31
Atlantogenata	ANCESTRAL SPECIES		ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000162678 #32	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Xenarthra	ANCESTRAL SPECIES	400													ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00940000162406 #26	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29
Armadillo	MODERN SPECIES	1034												GLRA1 (ENSDNOG00000012718) #19	ENSDNOG00000018758 #20	ENSDNOG00000009139	ENSDNOG00000039823	SPARC (ENSDNOG00000031703) #22	FAT2 (ENSDNOG00000034136) #23	SLC36A1 (ENSDNOG00000019229) #24	SLC36A2 (ENSDNOG00000043935) #25	SLC36A3 (ENSDNOG00000019271) #26	GM2A (ENSDNOG00000042400) #27	CCDC69 (ENSDNOG00000035057) #28	ANXA6 (ENSDNOG00000008697) #29
Afrotheria	ANCESTRAL SPECIES	7	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000183007.a.b.g.a.b.a ##33	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Afrotheria_a	ANCESTRAL SPECIES	7	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000162044 #25	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000183007.a.b.g.a.b.a ##33	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Elephant	MODERN SPECIES	2	MRPL22 (ENSLAFG00000009866) #7	GEMIN5 (ENSLAFG00000009857) #8	CNOT8 (ENSLAFG00000009852) #9	FAXDC2 (ENSLAFG00000008997) #10	LARP1 (ENSLAFG00000008991) #11	HAND1 (ENSLAFG00000017517) #12	SAP30L (ENSLAFG00000002292) #13	GALNT10 (ENSLAFG00000008266) #14	MFAP3 (ENSLAFG00000005375) #15	FAM114A2 (ENSLAFG00000001974) #16	GRIA1 (ENSLAFG00000013665) #17	NMUR2 (ENSLAFG00000031406) #18	GLRA1 (ENSLAFG00000021726) #19	G3BP1 (ENSLAFG00000009182) #20	ENSLAFG00000017926	SPARC (ENSLAFG00000017920) #22	FAT2 (ENSLAFG00000008329) #23	SLC36A1 (ENSLAFG00000008327) #24	ENSLAFG00000031631 #25	SLC36A2 (ENSLAFG00000016871) #25	GM2A (ENSLAFG00000013672) #27	ENSLAFG00000032400	ENSLAFG00000010040 #28	ENSLAFG00000029680	ANXA6 (ENSLAFG00000018391) #29	TNIP1 (ENSLAFG00000018389) #30	GPX3 (ENSLAFG00000020856) #31	ENSLAFG00000031011 ##33	ENSLAFG00000027033 ##33	SMIM3 (ENSLAFG00000026711) #34	DCTN4 (ENSLAFG00000022414) #35
Hyrax	MODERN SPECIES	12077																SPARC (ENSPCAG00000012449) #22
Tenrec	MODERN SPECIES	8896																SPARC (ENSETEG00000002555) #22	ENSETEG00000002553
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583.b #24	ENSGT00940000156583.a.b #24	ENSGT00940000156583.a.a #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000161098	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.b.b.a	ENSGT00940000157857
Opossum	MODERN SPECIES		GEMIN5 (ENSMODG00000008598) #8	CNOT8 (ENSMODG00000008609) #9	FAXDC2 (ENSMODG00000008620) #10	ENSMODG00000040983	LARP1 (ENSMODG00000008663) #11	HAND1 (ENSMODG00000008678) #12	GALNT10 (ENSMODG00000008702) #14	FAM114A2 (ENSMODG00000008822) #16	MFAP3 (ENSMODG00000049635) #15	GRIA1 (ENSMODG00000008900) #17	ENSMODG00000048440	NMUR2 (ENSMODG00000008916) #18	GLRA1 (ENSMODG00000008959) #19	ENSMODG00000008993 #20	ENSMODG00000009005	SPARC (ENSMODG00000009028) #22	ENSMODG00000023724	FAT2 (ENSMODG00000009050) #23	ENSMODG00000009087 #24	ENSMODG00000023726	ENSMODG00000009116 #24	ENSMODG00000038775	ENSMODG00000025741 #24	GM2A (ENSMODG00000041349) #27	CCDC69 (ENSMODG00000049591) #28	ENSMODG00000009261	ANXA6 (ENSMODG00000009301) #29	TNIP1 (ENSMODG00000009314) #30	ENSMODG00000047911	GPX6 (ENSMODG00000039308)	ADAMTS2 (ENSMODG00000009345)
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583.b #24	ENSGT00940000156583.a.b #24	ENSGT00940000156583.a.a #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000161098	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.b.b.a	ENSGT00940000157857
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583.b #24	ENSGT00940000156583.a.b #24	ENSGT00940000156583.a.a #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.b.b.a	ENSGT00940000157857	ENSGT00390000000703
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583.b #24	ENSGT00940000156583.a.b #24	ENSGT00940000156583.a.a #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754.c #31	ENSGT00940000156647	ENSGT00940000158334	ENSGT00940000153503.b.b.a	ENSGT00940000157857	ENSGT00390000000703.e
Common wonbat	MODERN SPECIES	1087	ENSVURG00010004975 #9	FAXDC2 (ENSVURG00010005023) #10	LARP1 (ENSVURG00010005070) #11	HAND1 (ENSVURG00010005268) #12	SAP30L (ENSVURG00010005280) #13	GALNT10 (ENSVURG00010005297) #14	MFAP3 (ENSVURG00010005318) #15	FAM114A2 (ENSVURG00010005330) #16	ENSVURG00010005340	GRIA1 (ENSVURG00010005382) #17	ENSVURG00010005716	NMUR2 (ENSVURG00010005758) #18	GLRA1 (ENSVURG00010005833) #19	G3BP1 (ENSVURG00010006069) #20	ENSVURG00010006090	SPARC (ENSVURG00010006108) #22	FAT2 (ENSVURG00010006127) #23	ENSVURG00010006189 #24	ENSVURG00010006202 #24	ENSVURG00010006213 #24	ENSVURG00010006249 #27	CCDC69 (ENSVURG00010006261) #28	ENSVURG00010006271	ANXA6 (ENSVURG00010006294) #29	TNIP1 (ENSVURG00010006352) #30	GPX3 (ENSVURG00010006412) #31	ADAMTS2 (ENSVURG00010006800)	RUFY1 (ENSVURG00010007573)	ENSVURG00010007600	ENSVURG00010007650	NDST1 (ENSVURG00010007669)
koala	MODERN SPECIES	151												NMUR2 (ENSPCIG00000007098) #18	GLRA1 (ENSPCIG00000010362) #19	ENSPCIG00000010359 #20	ENSPCIG00000031232	SPARC (ENSPCIG00000028482) #22	FAT2 (ENSPCIG00000028484) #23	ENSPCIG00000028584 #24	ENSPCIG00000028585 #24	ENSPCIG00000034387 #24	ENSPCIG00000028586 #27	CCDC69 (ENSPCIG00000028587) #28	ANXA6 (ENSPCIG00000028590) #29	ENSPCIG00000028598 #31	TNIP1 (ENSPCIG00000028596) #30	ADAMTS2 (ENSPCIG00000024262)	RUFY1 (ENSPCIG00000007818)	ENSPCIG00000007921	NDST1 (ENSPCIG00000007977)	ENSPCIG00000014632	CD74 (ENSPCIG00000014630)
Wallaby	MODERN SPECIES	164																ENSMEUG00000008351 #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000023532	MRPL22 (ENSSHAG00000012127) #7	GEMIN5 (ENSSHAG00000011898) #8	CNOT8 (ENSSHAG00000029841) #9	FAXDC2 (ENSSHAG00000011294) #10	LARP1 (ENSSHAG00000011115) #11	HAND1 (ENSSHAG00000009358) #12	SAP30L (ENSSHAG00000008928) #13	GALNT10 (ENSSHAG00000008308) #14	MFAP3 (ENSSHAG00000001535) #15	FAM114A2 (ENSSHAG00000028673) #16	GRIA1 (ENSSHAG00000027358) #17	NMUR2 (ENSSHAG00000027327) #18	GLRA1 (ENSSHAG00000008615) #19	G3BP1 (ENSSHAG00000008357) #20	ENSSHAG00000007301 #22	FAT2 (ENSSHAG00000005530) #23	ENSSHAG00000004583 #24	ENSSHAG00000001683 #24	ENSSHAG00000023006 #24	ENSSHAG00000023155 #27	ENSSHAG00000002492 #28	ANXA6 (ENSSHAG00000023993) #29	TNIP1 (ENSSHAG00000031953) #30	ENSSHAG00000001286	ENSSHAG00000018488	ENSSHAG00000018205	ENSSHAG00000018204	ENSSHAG00000018096	RPS14 (ENSSHAG00000025299)	ENSSHAG00000030118
Platypus	MODERN SPECIES	84	GEMIN5 (ENSOANG00000005092) #8	CNOT8 (ENSOANG00000005094) #9	FAXDC2 (ENSOANG00000005095) #10	ENSOANG00000049431	LARP1 (ENSOANG00000005096) #11	HAND1 (ENSOANG00000005097) #12	SAP30L (ENSOANG00000005099) #13	GALNT10 (ENSOANG00000005100) #14	MFAP3 (ENSOANG00000005101) #15	FAM114A2 (ENSOANG00000005102) #16	GRIA1 (ENSOANG00000005104) #17	NMUR2 (ENSOANG00000005108) #18	GLRA1 (ENSOANG00000005109) #19	G3BP1 (ENSOANG00000005110) #20	ENSOANG00000046840	SPARC (ENSOANG00000005112) #22	FAT2 (ENSOANG00000005115) #23	SLC36A1 (ENSOANG00000005116) #24	CCDC69 (ENSOANG00000047108) #28	GM2A (ENSOANG00000048316) #27	ENSOANG00000047207	ENSOANG00000009602	ANXA6 (ENSOANG00000006565) #29	TNIP1 (ENSOANG00000014585) #30	ENSOANG00000046389	SMIM3 (ENSOANG00000014588) #34	DCTN4 (ENSOANG00000002315) #35	RBM22 (ENSOANG00000002314) #36	MYOZ3 (ENSOANG00000045135) #37	SYNPO (ENSOANG00000002313)	NDST1 (ENSOANG00000002310)
Sauria	ANCESTRAL SPECIES	17	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
Archelosauria	ANCESTRAL SPECIES	15	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000185756	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Cryptodira	ANCESTRAL SPECIES	15	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000185756	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000185756	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Emydidae	ANCESTRAL SPECIES	11	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000185756	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Three-toed box turtle	MODERN SPECIES	306	ENSTMTG00000005271	FAXDC2 (ENSTMTG00000005244) #10	ENSTMTG00000005229	LARP1 (ENSTMTG00000005192) #11	HAND1 (ENSTMTG00000005179) #12	SAP30L (ENSTMTG00000005169) #13	GALNT10 (ENSTMTG00000004958) #14	MFAP3 (ENSTMTG00000004933) #15	FAM114A2 (ENSTMTG00000004900) #16	ENSTMTG00000004873	GRIA1 (ENSTMTG00000004812) #17	NMUR2 (ENSTMTG00000004784) #18	GLRA1 (ENSTMTG00000004636) #19	G3BP1 (ENSTMTG00000004591) #20	ENSTMTG00000004577	SPARC (ENSTMTG00000004555) #22	FAT2 (ENSTMTG00000004263) #23	ENSTMTG00000004152	SLC36A1 (ENSTMTG00000004108) #24	GM2A (ENSTMTG00000004086) #27	CCDC69 (ENSTMTG00000004066) #28	ENSTMTG00000004013	ENSTMTG00000003739 #29	TNIP1 (ENSTMTG00000003667) #30	GPX3 (ENSTMTG00000003546) #31	SMIM3 (ENSTMTG00000003506) #34	DCTN4 (ENSTMTG00000003463) #35	RBM22 (ENSTMTG00000003428) #36	MYOZ3 (ENSTMTG00000003399) #37	SYNPO (ENSTMTG00000003374)	NDST1 (ENSTMTG00000022222)
painted turtle	MODERN SPECIES	17	TNMD (ENSCPBG00000014280)	ENSCPBG00000014279	PCDH19 (ENSCPBG00000014278)	ENSCPBG00000014272	ENSCPBG00000014269	ENSCPBG00000014267	DIAPH2 (ENSCPBG00000010370)	ENSCPBG00000010259	ENSCPBG00000010256	ENSCPBG00000010252	NMUR2 (ENSCPBG00000010249) #18	ENSCPBG00000010247	GLRA1 (ENSCPBG00000010244) #19	G3BP1 (ENSCPBG00000010203) #20	ENSCPBG00000010201	SPARC (ENSCPBG00000010198) #22	FAT2 (ENSCPBG00000010173) #23	ENSCPBG00000010161	SLC36A1 (ENSCPBG00000010154) #24	GM2A (ENSCPBG00000010151) #27	CCDC69 (ENSCPBG00000010143) #28	ENSCPBG00000010140	ANXA6 (ENSCPBG00000010126) #29	TNIP1 (ENSCPBG00000010117) #30	GPX3 (ENSCPBG00000010113) #31	ENSCPBG00000010110	SMIM3 (ENSCPBG00000010107) #34	DCTN4 (ENSCPBG00000010099) #35	RBM22 (ENSCPBG00000010094) #36	MYOZ3 (ENSCPBG00000010091) #37	SYNPO (ENSCPBG00000010089)
Testudinidae	ANCESTRAL SPECIES	16	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00390000017153.b	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Goode s thornscrub tortoise	MODERN SPECIES	22	CNOT8 (ENSGEVG00005011803) #9	FAXDC2 (ENSGEVG00005011842) #10	ENSGEVG00005011918	LARP1 (ENSGEVG00005012218) #11	HAND1 (ENSGEVG00005012315) #12	SAP30L (ENSGEVG00005012349) #13	GALNT10 (ENSGEVG00005012367) #14	MFAP3 (ENSGEVG00005012393) #15	FAM114A2 (ENSGEVG00005012430) #16	ENSGEVG00005012483	GRIA1 (ENSGEVG00005012522) #17	NMUR2 (ENSGEVG00005012661) #18	GLRA1 (ENSGEVG00005012734) #19	G3BP1 (ENSGEVG00005013001) #20	ENSGEVG00005013078	SPARC (ENSGEVG00005013136) #22	FAT2 (ENSGEVG00005013423) #23	ENSGEVG00005014005	SLC36A1 (ENSGEVG00005014249) #24	GM2A (ENSGEVG00005014278) #27	ENSGEVG00005014297	ANXA6 (ENSGEVG00005014488) #29	TNIP1 (ENSGEVG00005014583) #30	GPX3 (ENSGEVG00005014640) #31	SMIM3 (ENSGEVG00005014738) #34	DCTN4 (ENSGEVG00005014776) #35	RBM22 (ENSGEVG00005014857) #36	MYOZ3 (ENSGEVG00005014881) #37	ENSGEVG00005014937	NDST1 (ENSGEVG00005014958)	ENSGEVG00005014997
Abingdon island giant tortoise	MODERN SPECIES	237								MFAP3 (ENSCABG00000012633) #15	FAM114A2 (ENSCABG00000012638) #16	ENSCABG00000012646	GRIA1 (ENSCABG00000012657) #17	NMUR2 (ENSCABG00000012675) #18	GLRA1 (ENSCABG00000012683) #19	G3BP1 (ENSCABG00000012692) #20	ENSCABG00000012696	SPARC (ENSCABG00000012700) #22	FAT2 (ENSCABG00000012713) #23	ENSCABG00000012732	SLC36A1 (ENSCABG00000012747) #24	GM2A (ENSCABG00000012943) #27	ENSCABG00000012951	ANXA6 (ENSCABG00000013037) #29	TNIP1 (ENSCABG00000013054) #30	GPX3 (ENSCABG00000013060) #31	SMIM3 (ENSCABG00000013063) #34	DCTN4 (ENSCABG00000013065) #35	RBM22 (ENSCABG00000013067) #36	MYOZ3 (ENSCABG00000013068) #37	ENSCABG00000013070	NDST1 (ENSCABG00000013072)	ENSCABG00000013078
Chinese turtle	MODERN SPECIES	2223	SGCD (ENSPSIG00000003964)	MRPL22 (ENSPSIG00000003917) #7	GEMIN5 (ENSPSIG00000003898) #8	CNOT8 (ENSPSIG00000003865) #9	FAXDC2 (ENSPSIG00000003855) #10	SAP30L (ENSPSIG00000003841) #13	GALNT10 (ENSPSIG00000003738) #14	MFAP3 (ENSPSIG00000003733) #15	FAM114A2 (ENSPSIG00000003722) #16	ENSPSIG00000018202	GRIA1 (ENSPSIG00000017385) #17	NMUR2 (ENSPSIG00000017257) #18	GLRA1 (ENSPSIG00000016350) #19	G3BP1 (ENSPSIG00000015000) #20	ENSPSIG00000014626	SPARC (ENSPSIG00000011115) #22	FAT2 (ENSPSIG00000008111) #23	ENSPSIG00000008066	SLC36A1 (ENSPSIG00000015463) #24	GM2A (ENSPSIG00000015341) #27	CCDC69 (ENSPSIG00000015221) #28	ENSPSIG00000014934	ANXA6 (ENSPSIG00000008983) #29	TNIP1 (ENSPSIG00000006078) #30	GPX3 (ENSPSIG00000005754) #31	SMIM3 (ENSPSIG00000000173) #34	DCTN4 (ENSPSIG00000015665) #35	ENSPSIG00000001287	RBM22 (ENSPSIG00000012818) #36	MYOZ3 (ENSPSIG00000011828) #37	SYNPO (ENSPSIG00000011116)
Archosauria	ANCESTRAL SPECIES	17	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00950000185756	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Australian saltwater crocodile	MODERN SPECIES	34	MRPL22 (ENSCPRG00005013174) #7	GEMIN5 (ENSCPRG00005013133) #8	CNOT8 (ENSCPRG00005013128) #9	FAXDC2 (ENSCPRG00005013127) #10	ENSCPRG00005013124	LARP1 (ENSCPRG00005012960) #11	GALNT10 (ENSCPRG00005012910) #14	MFAP3 (ENSCPRG00005012897) #15	FAM114A2 (ENSCPRG00005012889) #16	ENSCPRG00005012876	GRIA1 (ENSCPRG00005012861) #17	NMUR2 (ENSCPRG00005012849) #18	GLRA1 (ENSCPRG00005012827) #19	G3BP1 (ENSCPRG00005012799) #20	ENSCPRG00005012790	SPARC (ENSCPRG00005012780) #22	FAT2 (ENSCPRG00005012749) #23	SLC36A1 (ENSCPRG00005012734) #24	GM2A (ENSCPRG00005012728) #27	CCDC69 (ENSCPRG00005012720) #28	ENSCPRG00005012716	ENSCPRG00005012698	ANXA6 (ENSCPRG00005012657) #29	TNIP1 (ENSCPRG00005012646) #30	GPX3 (ENSCPRG00005012636) #31	SMIM3 (ENSCPRG00005012632) #34	DCTN4 (ENSCPRG00005012617) #35	RBM22 (ENSCPRG00005012610) #36	MYOZ3 (ENSCPRG00005012609) #37	SYNPO (ENSCPRG00005012604)	ENSCPRG00005012599
Aves	ANCESTRAL SPECIES	15	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Neognathae	ANCESTRAL SPECIES	14	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Neognathae_b	ANCESTRAL SPECIES	16	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Neognathae_c	ANCESTRAL SPECIES	19	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Golden eagle	MODERN SPECIES	14	CNOT8 (ENSACCG00020012722) #9	FAXDC2 (ENSACCG00020012743) #10	ENSACCG00020012765	LARP1 (ENSACCG00020012784) #11	HAND1 (ENSACCG00020012811) #12	SAP30L (ENSACCG00020012824) #13	GALNT10 (ENSACCG00020012927) #14	MFAP3 (ENSACCG00020012992) #15	FAM114A2 (ENSACCG00020013008) #16	ENSACCG00020013039	GRIA1 (ENSACCG00020013073) #17	NMUR2 (ENSACCG00020013101) #18	GLRA1 (ENSACCG00020013157) #19	G3BP1 (ENSACCG00020013189) #20	ENSACCG00020013212	SPARC (ENSACCG00020013224) #22	FAT2 (ENSACCG00020013376) #23	SLC36A1 (ENSACCG00020013502) #24	GM2A (ENSACCG00020013517) #27	CCDC69 (ENSACCG00020013524) #28	ENSACCG00020013572	ANXA6 (ENSACCG00020013645) #29	TNIP1 (ENSACCG00020013704) #30	GPX3 (ENSACCG00020013736) #31	ENSACCG00020013747	SMIM3 (ENSACCG00020013753) #34	DCTN4 (ENSACCG00020013777) #35	RBM22 (ENSACCG00020013795) #36	MYOZ3 (ENSACCG00020013815) #37	SYNPO (ENSACCG00020013828)	NDST1 (ENSACCG00020013844)
Kakapo	MODERN SPECIES	6	CNOT8 (ENSSHBG00005008914) #9	FAXDC2 (ENSSHBG00005008901) #10	ENSSHBG00005008895	LARP1 (ENSSHBG00005008881) #11	HAND1 (ENSSHBG00005008870) #12	SAP30L (ENSSHBG00005008866) #13	GALNT10 (ENSSHBG00005008389) #14	MFAP3 (ENSSHBG00005008364) #15	FAM114A2 (ENSSHBG00005008356) #16	ENSSHBG00005008348	GRIA1 (ENSSHBG00005008317) #17	NMUR2 (ENSSHBG00005008295) #18	GLRA1 (ENSSHBG00005008245) #19	G3BP1 (ENSSHBG00005008216) #20	ENSSHBG00005008207	SPARC (ENSSHBG00005008175) #22	FAT2 (ENSSHBG00005008032) #23	SLC36A1 (ENSSHBG00005007989) #24	GM2A (ENSSHBG00005007946) #27	ENSSHBG00005007887	ANXA6 (ENSSHBG00005007855) #29	TNIP1 (ENSSHBG00005007792) #30	GPX3 (ENSSHBG00005007768) #31	ENSSHBG00005007755	SMIM3 (ENSSHBG00005007746) #34	DCTN4 (ENSSHBG00005007727) #35	RBM22 (ENSSHBG00005007711) #36	MYOZ3 (ENSSHBG00005007697) #37	SYNPO (ENSSHBG00005007687)	NDST1 (ENSSHBG00005006350)	RPS14 (ENSSHBG00005006217)
Passeriformes	ANCESTRAL SPECIES	14	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Great tit	MODERN SPECIES	4	CNOT8 (ENSPMJG00000007792) #9	FAXDC2 (ENSPMJG00000007794) #10	ENSPMJG00000007801	LARP1 (ENSPMJG00000007802) #11	HAND1 (ENSPMJG00000007805) #12	SAP30L (ENSPMJG00000007806) #13	GALNT10 (ENSPMJG00000007807) #14	MFAP3 (ENSPMJG00000007808) #15	FAM114A2 (ENSPMJG00000007809) #16	ENSPMJG00000007815	GRIA1 (ENSPMJG00000007826) #17	NMUR2 (ENSPMJG00000007854) #18	GLRA1 (ENSPMJG00000007862) #19	G3BP1 (ENSPMJG00000007864) #20	ENSPMJG00000007865	SPARC (ENSPMJG00000007866) #22	ENSPMJG00000007867	ENSPMJG00000007868	FAT2 (ENSPMJG00000007869) #23	SLC36A1 (ENSPMJG00000007870) #24	GM2A (ENSPMJG00000007871) #27	CCDC69 (ENSPMJG00000007872) #28	ENSPMJG00000007873	ANXA6 (ENSPMJG00000008077) #29	TNIP1 (ENSPMJG00000008083) #30	GPX3 (ENSPMJG00000008085) #31	SMIM3 (ENSPMJG00000008103) #34	DCTN4 (ENSPMJG00000008104) #35	RBM22 (ENSPMJG00000008107) #36	MYOZ3 (ENSPMJG00000008108) #37	SYNPO (ENSPMJG00000008111)
Passeriformes_d	ANCESTRAL SPECIES	15	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Flycatcher	MODERN SPECIES	4	GEMIN5 (ENSFALG00000008360) #8	CNOT8 (ENSFALG00000008343) #9	FAXDC2 (ENSFALG00000008340) #10	LARP1 (ENSFALG00000008335) #11	HAND1 (ENSFALG00000008331) #12	SAP30L (ENSFALG00000008321) #13	GALNT10 (ENSFALG00000008313) #14	MFAP3 (ENSFALG00000024043) #15	FAM114A2 (ENSFALG00000008288) #16	ENSFALG00000008278	GRIA1 (ENSFALG00000008274) #17	NMUR2 (ENSFALG00000008268) #18	GLRA1 (ENSFALG00000008265) #19	G3BP1 (ENSFALG00000024655) #20	ENSFALG00000028160	SPARC (ENSFALG00000008238) #22	FAT2 (ENSFALG00000008202) #23	SLC36A1 (ENSFALG00000008186) #24	GM2A (ENSFALG00000008178) #27	CCDC69 (ENSFALG00000025974) #28	ENSFALG00000008156	ANXA6 (ENSFALG00000008115) #29	TNIP1 (ENSFALG00000008095) #30	ENSFALG00000008032	ENSFALG00000008089	SMIM3 (ENSFALG00000014369) #34	DCTN4 (ENSFALG00000008078) #35	ENSFALG00000008044 #37	RPS14 (ENSFALG00000025889)	CD74 (ENSFALG00000025470)	ENSFALG00000008004
Passeriformes_g	ANCESTRAL SPECIES	15	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Passeroidea	ANCESTRAL SPECIES	15	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Common canary	MODERN SPECIES	16	FAXDC2 (ENSSCAG00000012823) #10	ENSSCAG00000012819	LARP1 (ENSSCAG00000012799) #11	ENSSCAG00000012793	SAP30L (ENSSCAG00000012788) #13	GALNT10 (ENSSCAG00000012752) #14	MFAP3 (ENSSCAG00000012732) #15	FAM114A2 (ENSSCAG00000012723) #16	ENSSCAG00000012715	ENSSCAG00000012711	GRIA1 (ENSSCAG00000012153) #17	GLRA1 (ENSSCAG00000012004) #19	G3BP1 (ENSSCAG00000011996) #20	ENSSCAG00000011991	ENSSCAG00000011987	SPARC (ENSSCAG00000011984) #22	FAT2 (ENSSCAG00000011974) #23	SLC36A1 (ENSSCAG00000011968) #24	GM2A (ENSSCAG00000011966) #27	CCDC69 (ENSSCAG00000011959) #28	ENSSCAG00000011954	ANXA6 (ENSSCAG00000011936) #29	TNIP1 (ENSSCAG00000011913) #30	GPX3 (ENSSCAG00000011904) #31	SMIM3 (ENSSCAG00000011901) #34	DCTN4 (ENSSCAG00000011892) #35	RBM22 (ENSSCAG00000011882) #36	MYOZ3 (ENSSCAG00000011870) #37	SYNPO (ENSSCAG00000011864)	NDST1 (ENSSCAG00000011857)	RPS14 (ENSSCAG00000011854)
Zebra finch	MODERN SPECIES	4	CNOT8 (ENSTGUG00000000699) #9	FAXDC2 (ENSTGUG00000000681) #10	ENSTGUG00000018772	LARP1 (ENSTGUG00000000704) #11	HAND1 (ENSTGUG00000029362) #12	SAP30L (ENSTGUG00000028020) #13	GALNT10 (ENSTGUG00000000711) #14	MFAP3 (ENSTGUG00000026429) #15	FAM114A2 (ENSTGUG00000000719) #16	ENSTGUG00000000721	GRIA1 (ENSTGUG00000000726) #17	NMUR2 (ENSTGUG00000000747) #18	ENSTGUG00000000749 #19	G3BP1 (ENSTGUG00000000753) #20	ENSTGUG00000000767	SPARC (ENSTGUG00000000770) #22	FAT2 (ENSTGUG00000000776) #23	SLC36A1 (ENSTGUG00000000782) #24	GM2A (ENSTGUG00000000788) #27	CCDC69 (ENSTGUG00000000792) #28	ENSTGUG00000000794	ANXA6 (ENSTGUG00000000799) #29	TNIP1 (ENSTGUG00000000818) #30	SMIM3 (ENSTGUG00000028360) #34	DCTN4 (ENSTGUG00000000845) #35	RBM22 (ENSTGUG00000000850) #36	MYOZ3 (ENSTGUG00000000861) #37	SYNPO (ENSTGUG00000000864)	NDST1 (ENSTGUG00000000871)	RPS14 (ENSTGUG00000018459)	CD74 (ENSTGUG00000000882)
Medium ground finch	MODERN SPECIES	11	FAXDC2 (ENSGFOG00000000676) #10	ENSGFOG00000000672	ENSGFOG00000000668	LARP1 (ENSGFOG00000000636) #11	HAND1 (ENSGFOG00000000622) #12	SAP30L (ENSGFOG00000000617) #13	GALNT10 (ENSGFOG00000000586) #14	MFAP3 (ENSGFOG00000000531) #15	FAM114A2 (ENSGFOG00000000521) #16	ENSGFOG00000000509	GRIA1 (ENSGFOG00000000487) #17	NMUR2 (ENSGFOG00000000474) #18	GLRA1 (ENSGFOG00000000427) #19	G3BP1 (ENSGFOG00000000402) #20	ENSGFOG00000000393	SPARC (ENSGFOG00000000383) #22	FAT2 (ENSGFOG00000000362) #23	SLC36A1 (ENSGFOG00000000348) #24	GM2A (ENSGFOG00000000340) #27	CCDC69 (ENSGFOG00000000327) #28	ENSGFOG00000000286	ANXA6 (ENSGFOG00000000247) #29	TNIP1 (ENSGFOG00000000233) #30	ENSGFOG00000000228	SMIM3 (ENSGFOG00000000223) #34	DCTN4 (ENSGFOG00000000214) #35	RBM22 (ENSGFOG00000000208) #36	MYOZ3 (ENSGFOG00000000204) #37	ENSGFOG00000000198	NDST1 (ENSGFOG00000000193)	RPS14 (ENSGFOG00000000190)
Galloanserae	ANCESTRAL SPECIES	14	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Phasianidae	ANCESTRAL SPECIES	14	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Phasianidae_b	ANCESTRAL SPECIES	18	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703
Chicken	DUPLICATION
Chicken	MODERN SPECIES		NAXD (ENSGALG00010014362)	CARS2 (ENSGALG00010014379)	ING1 (ENSGALG00010014396)	ANKRD10 (ENSGALG00010013110)	ARHGEF7 (ENSGALG00010013080)	SOX1 (ENSGALG00010015997)	ENSGALG00010013138	ENSGALG00010013145	ENSGALG00010013151	ENSGALG00010013159	ENSGALG00010016450	ENSGALG00010013163	TNFSF13B (ENSGALG00010013172)	ABHD13 (ENSGALG00010014965)	LIG4 (ENSGALG00010014974)	ENSGALG00010014980 #22	NALF1 (ENSGALG00010014982)	ENSGALG00010014998	ARGLU1 (ENSGALG00010015016)	EFNB2 (ENSGALG00010015042)	ENSGALG00010015088	SLC10A2 (ENSGALG00010006019)	ENSGALG00010006086	ERCC5 (ENSGALG00010006031)	METTL21EP (ENSGALG00010006037)	BIVM (ENSGALG00010006059)	KDELC1 (ENSGALG00010006063)	TEX30 (ENSGALG00010006071)	METTL21C (ENSGALG00010005165)	TPP2 (ENSGALG00010005174)	FGF14 (ENSGALG00010005184)
Chicken	MODERN SPECIES	4	CNOT8 (ENSGALG00010015686) #9	FAXDC2 (ENSGALG00010015697) #10	ENSGALG00010015721	LARP1 (ENSGALG00010015796) #11	HAND1 (ENSGALG00010015835) #12	SAP30L (ENSGALG00010015845) #13	GALNT10 (ENSGALG00010016768) #14	MFAP3 (ENSGALG00010012890) #15	FAM114A2 (ENSGALG00010012898) #16	ENSGALG00010016599	GRIA1 (ENSGALG00010016612) #17	NMUR2 (ENSGALG00010014224) #18	GLRA1 (ENSGALG00010014234) #19	G3BP1 (ENSGALG00010014278) #20	ENSGALG00010014319	SPARC (ENSGALG00010014390) #22	FAT2 (ENSGALG00010014522) #23	SLC36A1 (ENSGALG00010014645) #24	GM2A (ENSGALG00010017346) #27	CCDC69 (ENSGALG00010014769) #28	ENSGALG00010014719	ANXA6 (ENSGALG00010014824) #29	TNIP1 (ENSGALG00010016470) #30	GPX3 (ENSGALG00010016480) #31	SMIM3 (ENSGALG00010016654) #34	DCTN4 (ENSGALG00010016672) #35	RBM22 (ENSGALG00010016683) #36	SYNPO (ENSGALG00010016699)	NDST1 (ENSGALG00010013387)	RPS14 (ENSGALG00010013405)	CD74 (ENSGALG00010013450)
Turkey	MODERN SPECIES	6	ENSMGAG00000006589	ENSMGAG00000006625	NDST1 (ENSMGAG00000006555)	ENSMGAG00000006298 #36	ENSMGAG00000006492 #37	DCTN4 (ENSMGAG00000006209) #35	ENSMGAG00000019339 #34	ANXA6 (ENSMGAG00000006334) #29	ENSMGAG00000006480 #30	GPX3 (ENSMGAG00000006141) #31	ENSMGAG00000018809	ENSMGAG00000006247	ENSMGAG00000006203 #27	ENSMGAG00000006160 #24	ENSMGAG00000006079 #23	ENSMGAG00000006021 #22	ENSMGAG00000006016	ENSMGAG00000005963 #20	ENSMGAG00000005959 #19	ENSMGAG00000005947 #18	ENSMGAG00000022543	ENSMGAG00000017655 #17	ENSMGAG00000005850 #17	ENSMGAG00000016971 #17	ENSMGAG00000005838	MFAP3 (ENSMGAG00000005793) #15	ENSMGAG00000005799 #16	GALNT10 (ENSMGAG00000005743) #14	ENSMGAG00000005690 #10	ENSMGAG00000019404	ENSMGAG00000005696 #11
Japanese quail	MODERN SPECIES	4	CNOT8 (ENSCJPG00005007206) #9	FAXDC2 (ENSCJPG00005007205) #10	ENSCJPG00005007204	LARP1 (ENSCJPG00005007203) #11	HAND1 (ENSCJPG00005007202) #12	SAP30L (ENSCJPG00005007201) #13	GALNT10 (ENSCJPG00005007200) #14	MFAP3 (ENSCJPG00005007199) #15	FAM114A2 (ENSCJPG00005007198) #16	ENSCJPG00005007196	GRIA1 (ENSCJPG00005007141) #17	NMUR2 (ENSCJPG00005007135) #18	GLRA1 (ENSCJPG00005007056) #19	G3BP1 (ENSCJPG00005007055) #20	ENSCJPG00005007054	SPARC (ENSCJPG00005007052) #22	FAT2 (ENSCJPG00005007006) #23	SLC36A1 (ENSCJPG00005007005) #24	GM2A (ENSCJPG00005007004) #27	CCDC69 (ENSCJPG00005007002) #28	ENSCJPG00005006968	ANXA6 (ENSCJPG00005006964) #29	TNIP1 (ENSCJPG00005006963) #30	GPX3 (ENSCJPG00005006961) #31	SMIM3 (ENSCJPG00005006960) #34	DCTN4 (ENSCJPG00005006837) #35	RBM22 (ENSCJPG00005006830) #36	MYOZ3 (ENSCJPG00005006811) #37	SYNPO (ENSCJPG00005006809)	NDST1 (ENSCJPG00005006563)	RPS14 (ENSCJPG00005006550)
Anatidae	ANCESTRAL SPECIES	15	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00960000189391	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703	ENSGT00390000008961
Pink-footed goose	MODERN SPECIES	9	FAXDC2 (ENSABRG00000017073) #10	ENSABRG00000017076	LARP1 (ENSABRG00000017090) #11	HAND1 (ENSABRG00000017143) #12	SAP30L (ENSABRG00000017146) #13	GALNT10 (ENSABRG00000017149) #14	MFAP3 (ENSABRG00000017160) #15	FAM114A2 (ENSABRG00000017166) #16	ENSABRG00000017175	GRIA1 (ENSABRG00000017183) #17	NMUR2 (ENSABRG00000017229) #18	GLRA1 (ENSABRG00000017237) #19	ENSABRG00000017242	G3BP1 (ENSABRG00000017248) #20	ENSABRG00000017251	SPARC (ENSABRG00000017258) #22	FAT2 (ENSABRG00000017269) #23	SLC36A1 (ENSABRG00000017306) #24	GM2A (ENSABRG00000017315) #27	CCDC69 (ENSABRG00000017318) #28	ANXA6 (ENSABRG00000017332) #29	TNIP1 (ENSABRG00000017360) #30	GPX3 (ENSABRG00000017372) #31	SMIM3 (ENSABRG00000017378) #34	DCTN4 (ENSABRG00000017383) #35	RBM22 (ENSABRG00000017385) #36	MYOZ3 (ENSABRG00000017392) #37	SYNPO (ENSABRG00000017403)	NDST1 (ENSABRG00000017410)	RPS14 (ENSABRG00000017420)	CD74 (ENSABRG00000017448)
Duck	MODERN SPECIES	5	CNOT8 (ENSAPLG00000007128) #9	FAXDC2 (ENSAPLG00000007416) #10	ENSAPLG00000021218	LARP1 (ENSAPLG00000007559) #11	HAND1 (ENSAPLG00000019600) #12	SAP30L (ENSAPLG00000020905) #13	GALNT10 (ENSAPLG00000007938) #14	MFAP3 (ENSAPLG00000018241) #15	FAM114A2 (ENSAPLG00000008179) #16	ENSAPLG00000008439	GRIA1 (ENSAPLG00000008617) #17	NMUR2 (ENSAPLG00000008762) #18	GLRA1 (ENSAPLG00000007106) #19	G3BP1 (ENSAPLG00000006581) #20	ENSAPLG00000017300	SPARC (ENSAPLG00000006120) #22	FAT2 (ENSAPLG00000005340) #23	ENSAPLG00000004805 #27	CCDC69 (ENSAPLG00000022330) #28	ANXA6 (ENSAPLG00000003352) #29	TNIP1 (ENSAPLG00000002442) #30	GPX3 (ENSAPLG00000002355) #31	SYNPO (ENSAPLG00000024895)	RBM22 (ENSAPLG00000016408) #36	MYOZ3 (ENSAPLG00000016381) #37	NDST1 (ENSAPLG00000016141)	RPS14 (ENSAPLG00000013923)	ENSAPLG00000015849	ENSAPLG00000019781	ENSAPLG00000014627	SLC6A7 (ENSAPLG00000014083)
African ostrich	MODERN SPECIES	997	MRPL22 (ENSSCUG00000012957) #7	GEMIN5 (ENSSCUG00000012925) #8	CNOT8 (ENSSCUG00000012907) #9	FAXDC2 (ENSSCUG00000012904) #10	LARP1 (ENSSCUG00000012881) #11	SAP30L (ENSSCUG00000012872) #13	GALNT10 (ENSSCUG00000012869) #14	MFAP3 (ENSSCUG00000012863) #15	FAM114A2 (ENSSCUG00000012860) #16	ENSSCUG00000012853	GRIA1 (ENSSCUG00000012847) #17	NMUR2 (ENSSCUG00000012843) #18	GLRA1 (ENSSCUG00000012841) #19	G3BP1 (ENSSCUG00000012837) #20	ENSSCUG00000012836	SPARC (ENSSCUG00000012835) #22	FAT2 (ENSSCUG00000012826) #23	SLC36A1 (ENSSCUG00000012824) #24	CCDC69 (ENSSCUG00000012820) #28	ENSSCUG00000012818	ANXA6 (ENSSCUG00000012813) #29	TNIP1 (ENSSCUG00000012804) #30	ENSSCUG00000012801	DCTN4 (ENSSCUG00000012786) #35	RBM22 (ENSSCUG00000012776) #36	MYOZ3 (ENSSCUG00000012774) #37	NDST1 (ENSSCUG00000012770)	RPS14 (ENSSCUG00000012768)	PPARGC1B (ENSSCUG00000012755)	SLC26A2 (ENSSCUG00000012737)	ENSSCUG00000012735
Lepidosauria	ANCESTRAL SPECIES	15	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161754 #31	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36
tuatara	MODERN SPECIES	878													GLRA1 (ENSSPUG00000004412) #19	G3BP1 (ENSSPUG00000004389) #20	ENSSPUG00000004381	SPARC (ENSSPUG00000004361) #22	FAT2 (ENSSPUG00000004326) #23	ENSSPUG00000004296	SLC36A1 (ENSSPUG00000004241) #24	GM2A (ENSSPUG00000004231) #27	CCDC69 (ENSSPUG00000004219) #28	ENSSPUG00000004165	ANXA6 (ENSSPUG00000004091) #29	TNIP1 (ENSSPUG00000004058) #30	GPX3 (ENSSPUG00000004036) #31	SMIM3 (ENSSPUG00000004023) #34	DCTN4 (ENSSPUG00000004008) #35	RBM22 (ENSSPUG00000003986) #36	MYOZ3 (ENSSPUG00000003918) #37	ENSSPUG00000003907	NDST1 (ENSSPUG00000003866)
Episquamata	ANCESTRAL SPECIES	4	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT01040000244563	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Laterata	ANCESTRAL SPECIES	1	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT01040000244563	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000161098	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000007602	FAXDC2 (ENSPMRG00000007690) #10	LARP1 (ENSPMRG00000007680) #11	HAND1 (ENSPMRG00000007673) #12	SAP30L (ENSPMRG00000007669) #13	GALNT10 (ENSPMRG00000007662) #14	MFAP3 (ENSPMRG00000007659) #15	FAM114A2 (ENSPMRG00000007654) #16	ENSPMRG00000007647	ENSPMRG00000007633	GRIA1 (ENSPMRG00000007592) #17	NMUR2 (ENSPMRG00000007570) #18	GLRA1 (ENSPMRG00000007560) #19	G3BP1 (ENSPMRG00000007541) #20	ENSPMRG00000007527	SPARC (ENSPMRG00000007489) #22	ENSPMRG00000007473	FAT2 (ENSPMRG00000007452) #23	ENSPMRG00000007441	SLC36A1 (ENSPMRG00000007417) #24	GM2A (ENSPMRG00000007399) #27	CCDC69 (ENSPMRG00000007381) #28	ENSPMRG00000007368	ENSPMRG00000007343	ANXA6 (ENSPMRG00000007232) #29	TNIP1 (ENSPMRG00000007183) #30	GPX6 (ENSPMRG00000007158)	SMIM3 (ENSPMRG00000007147) #34	DCTN4 (ENSPMRG00000007112) #35	RBM22 (ENSPMRG00000007097) #36	MYOZ3 (ENSPMRG00000007082) #37
Argentine black and white tegu	MODERN SPECIES	1	FAXDC2 (ENSSMRG00000015121) #10	ENSSMRG00000015122	LARP1 (ENSSMRG00000015123) #11	HAND1 (ENSSMRG00000015124) #12	SAP30L (ENSSMRG00000015125) #13	GALNT10 (ENSSMRG00000015126) #14	MFAP3 (ENSSMRG00000015128) #15	FAM114A2 (ENSSMRG00000015129) #16	ENSSMRG00000015135	GRIA1 (ENSSMRG00000015140) #17	NMUR2 (ENSSMRG00000015143) #18	ENSSMRG00000015152	GLRA1 (ENSSMRG00000015154) #19	G3BP1 (ENSSMRG00000015155) #20	ENSSMRG00000015156	SPARC (ENSSMRG00000015158) #22	FAT2 (ENSSMRG00000015178) #23	ENSSMRG00000016966	SLC36A1 (ENSSMRG00000016977) #24	GM2A (ENSSMRG00000016978) #27	CCDC69 (ENSSMRG00000016980) #28	ENSSMRG00000016981	ENSSMRG00000016982	ANXA6 (ENSSMRG00000016996) #29	TNIP1 (ENSSMRG00000017005) #30	GPX6 (ENSSMRG00000017010)	ENSSMRG00000017011	SMIM3 (ENSSMRG00000017012) #34	DCTN4 (ENSSMRG00000017013) #35	RBM22 (ENSSMRG00000017030) #36	MYOZ3 (ENSSMRG00000017033) #37
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT01040000244563	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37
Lizard	MODERN SPECIES		TTC32 (ENSACAG00000014548)	ENSACAG00000014553	ENSACAG00000036133	ENSACAG00000003251	OSR1 (ENSACAG00000007059)	ENSACAG00000044400	NT5C1B (ENSACAG00000007066)	RDH14 (ENSACAG00000044389)	ENSACAG00000007095	ENSACAG00000042353	ENSACAG00000044738	ENSACAG00000041381	ENSACAG00000037198	ENSACAG00000039614	ENSACAG00000042621	ENSACAG00000009888 #22	ENSACAG00000043535	ENSACAG00000009115	ENSACAG00000039031	TMEM14A (ENSACAG00000009053)	ENSACAG00000008898	ENSACAG00000041899	ENSACAG00000008814	ENSACAG00000001664	CILK1 (ENSACAG00000008662)	FBXO9 (ENSACAG00000008576)	ENSACAG00000039436	ELOVL5 (ENSACAG00000008501)	GCLC (ENSACAG00000008412)	KLHL31 (ENSACAG00000008404)	ENSACAG00000036656
Elapidae	ANCESTRAL SPECIES	2	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Elapidae_a	ANCESTRAL SPECIES	11	ENSGT00940000158509	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Acanthophiinae	ANCESTRAL SPECIES	12	ENSGT00390000002110 #7	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00950000186047	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000009443 #34	ENSGT00390000006954 #35	ENSGT00390000002792 #36	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b	ENSGT00940000157857
Eastern brown snake	MODERN SPECIES	6	MRPL22 (ENSPTXG00000013999) #7	GEMIN5 (ENSPTXG00000013953) #8	CNOT8 (ENSPTXG00000013952) #9	LARP1 (ENSPTXG00000013950) #11	HAND1 (ENSPTXG00000013949) #12	SAP30L (ENSPTXG00000013948) #13	GALNT10 (ENSPTXG00000013947) #14	MFAP3 (ENSPTXG00000013946) #15	FAM114A2 (ENSPTXG00000013945) #16	ENSPTXG00000013944	ENSPTXG00000013943	GRIA1 (ENSPTXG00000013942) #17	GLRA1 (ENSPTXG00000013941) #19	G3BP1 (ENSPTXG00000013939) #20	ENSPTXG00000013938	SPARC (ENSPTXG00000013937) #22	FAT2 (ENSPTXG00000013927) #23	SLC36A1 (ENSPTXG00000013926) #24	GM2A (ENSPTXG00000013925) #27	CCDC69 (ENSPTXG00000013923) #28	ENSPTXG00000013910	ANXA6 (ENSPTXG00000013899) #29	TNIP1 (ENSPTXG00000013895) #30	ENSPTXG00000013889	SMIM3 (ENSPTXG00000013885) #34	DCTN4 (ENSPTXG00000013883) #35	RBM22 (ENSPTXG00000013880) #36	MYOZ3 (ENSPTXG00000013879) #37	SYNPO (ENSPTXG00000013876)	NDST1 (ENSPTXG00000013685)	ENSPTXG00000013679
Mainland tiger snake	MODERN SPECIES	4	CNOT8 (ENSNSUG00000016461) #9	ENSNSUG00000016464	LARP1 (ENSNSUG00000016466) #11	HAND1 (ENSNSUG00000016515) #12	SAP30L (ENSNSUG00000016516) #13	GALNT10 (ENSNSUG00000016517) #14	MFAP3 (ENSNSUG00000016578) #15	FAM114A2 (ENSNSUG00000016579) #16	ENSNSUG00000016581	ENSNSUG00000016582	GRIA1 (ENSNSUG00000016583) #17	GLRA1 (ENSNSUG00000016585) #19	ENSNSUG00000016586	G3BP1 (ENSNSUG00000016587) #20	ENSNSUG00000016588	SPARC (ENSNSUG00000016589) #22	FAT2 (ENSNSUG00000016590) #23	SLC36A1 (ENSNSUG00000016594) #24	GM2A (ENSNSUG00000016595) #27	ENSNSUG00000016596 #28	ENSNSUG00000016597	ANXA6 (ENSNSUG00000016599) #29	TNIP1 (ENSNSUG00000017140) #30	ENSNSUG00000017141	ENSNSUG00000017142	SMIM3 (ENSNSUG00000017143) #34	ENSNSUG00000017144 #35	RBM22 (ENSNSUG00000017145) #36	ENSNSUG00000017151	NDST1 (ENSNSUG00000017152)	RPS14 (ENSNSUG00000017156)
Blue-lipped sea krait	MODERN SPECIES	5836																SPARC (ENSLLTG00000007153) #22
Indian cobra	MODERN SPECIES	1	MRPL22 (ENSNNAG00000009139) #7	GEMIN5 (ENSNNAG00000009290) #8	CNOT8 (ENSNNAG00000011094) #9	LARP1 (ENSNNAG00000011214) #11	HAND1 (ENSNNAG00000012436) #12	SAP30L (ENSNNAG00000012474) #13	GALNT10 (ENSNNAG00000012546) #14	MFAP3 (ENSNNAG00000012623) #15	FAM114A2 (ENSNNAG00000012637) #16	ENSNNAG00000012684	GRIA1 (ENSNNAG00000012721) #17	NMUR2 (ENSNNAG00000012803) #18	GLRA1 (ENSNNAG00000012833) #19	G3BP1 (ENSNNAG00000012865) #20	ENSNNAG00000012897	SPARC (ENSNNAG00000012919) #22	FAT2 (ENSNNAG00000012968) #23	SLC36A1 (ENSNNAG00000013024) #24	GM2A (ENSNNAG00000013095) #27	ENSNNAG00000013115	ANXA6 (ENSNNAG00000013222) #29	TNIP1 (ENSNNAG00000013343) #30	ENSNNAG00000013472	ENSNNAG00000013509	ENSNNAG00000013537	ENSNNAG00000013549 #34	ENSNNAG00000013556 #34	DCTN4 (ENSNNAG00000013571) #35	RBM22 (ENSNNAG00000013595) #36	MYOZ3 (ENSNNAG00000013649) #37	ENSNNAG00000013658
Anura	ANCESTRAL SPECIES	54	ENSGT00620000088064 #8	ENSGT00390000000080.a.b #9	ENSGT00940000157328.C #10	ENSGT00940000159577 #11	ENSGT00940000161111 #12	ENSGT00390000006633.a #13	ENSGT00940000156690 #14	ENSGT00390000011576.b #15	ENSGT00390000010054.a #16	ENSGT00440000033329.a.a.a	ENSGT00940000157342 #17	ENSGT01100000263484.A.d #18	ENSGT00940000159047 #19	ENSGT00390000011365.a #20	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00390000003288 #27	ENSGT00950000183026.A.a.b #28	ENSGT00390000017153.b	ENSGT00940000166827	ENSGT00940000158770 #29	ENSGT00510000046908.a.a.a #30	ENSGT00940000165034	ENSGT00950000185412	ENSGT00390000007586.b	ENSGT00390000006954 #35	ENSGT00950000183027.a.a #37	ENSGT00950000183054.a.a.b
Leishan spiny toad	MODERN SPECIES	6	HAND1 (ENSLLEG00000005115) #12	SAP30L (ENSLLEG00000005087) #13	ENSLLEG00000005058 #14	ENSLLEG00000005043	MFAP3 (ENSLLEG00000005034) #15	FAM114A2 (ENSLLEG00000004992) #16	ENSLLEG00000004980	ENSLLEG00000004938	GRIA1 (ENSLLEG00000004832) #17	ENSLLEG00000004782	ENSLLEG00000011752	NMUR2 (ENSLLEG00000011543) #18	GLRA1 (ENSLLEG00000011169) #19	G3BP1 (ENSLLEG00000011072) #20	ENSLLEG00000011021	SPARC (ENSLLEG00000010969) #22	FAT2 (ENSLLEG00000010770) #23	ENSLLEG00000010730	SLC36A1 (ENSLLEG00000010523) #24	GM2A (ENSLLEG00000010438) #27	CCDC69 (ENSLLEG00000010300) #28	ENSLLEG00000010239	ENSLLEG00000010220	ENSLLEG00000010199	ENSLLEG00000009677	ENSLLEG00000009594	ENSLLEG00000009359	ENSLLEG00000009145	ANXA6 (ENSLLEG00000008652) #29	ENSLLEG00000008611	ENSLLEG00000008600
Frog	MODERN SPECIES	3	pwwp2a (ENSXETG00000005717)	ENSXETG00000046834	ttc1 (ENSXETG00000040681)	fabp6 (ENSXETG00000005714)	ENSXETG00000044389	ENSXETG00000047275	anks1b (ENSXETG00000040826)	ENSXETG00000045817	uhrf1bp1l (ENSXETG00000022694)	ENSXETG00000043560	ENSXETG00000042459	ckap4 (ENSXETG00000010716)	ENSXETG00000047146	g3bp1 (ENSXETG00000010712) #20	atox1 (ENSXETG00000026565)	sparc (ENSXETG00000010707) #22	ENSXETG00000045811	ENSXETG00000044166	fat2 (ENSXETG00000039824) #23	ENSXETG00000048476	ENSXETG00000025361	ENSXETG00000046375	slc36a1 (ENSXETG00000019424) #24	ENSXETG00000042567	ENSXETG00000040181 #27	ENSXETG00000049352	gm2a (ENSXETG00000040972) #27	ccdc69 (ENSXETG00000019409) #28	gemin5 (ENSXETG00000019404) #8	mrpl22 (ENSXETG00000019403) #7	ENSXETG00000044379
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	246		FAXDC2 (ENSLACG00000018718) #10	LARP1 (ENSLACG00000018700) #11	ENSLACG00000018686	HAND1 (ENSLACG00000018666) #12	SAP30L (ENSLACG00000018656) #13	GALNT10 (ENSLACG00000018628) #14	MFAP3 (ENSLACG00000018585) #15	FAM114A2 (ENSLACG00000018578) #16	ENSLACG00000018562	GRIA1 (ENSLACG00000018465) #17	NMUR2 (ENSLACG00000018237) #18	GLRA1 (ENSLACG00000017989) #19	G3BP1 (ENSLACG00000017962) #20	atox1 (ENSLACG00000017945)	SPARC (ENSLACG00000017878) #22	ENSLACG00000017718 #23	ENSLACG00000017631	ENSLACG00000017499 #24	GM2A (ENSLACG00000017468) #27	CCDC69 (ENSLACG00000017395) #28	ENSLACG00000017377	ENSLACG00000017344	ANXA6 (ENSLACG00000017217) #29	TNIP1 (ENSLACG00000017071) #30	gpx3 (ENSLACG00000017032)	ENSLACG00000016993	DCTN4 (ENSLACG00000016808) #35	MYOZ3 (ENSLACG00000016775) #37	SYNPO (ENSLACG00000016722)	ENSLACG00000016448
Coelacanth	MODERN SPECIES	2312																ENSLACG00000007542 #22	USO1 (ENSLACG00000005570)	G3BP2 (ENSLACG00000002985) ##20	CDKL2 (ENSLACG00000000336)
Actinopterygii	ANCESTRAL SPECIES	30	ENSGT00940000160838	ENSGT00940000155429.b	ENSGT00950000183054.a.a.b	ENSGT00390000006954 #35	ENSGT00940000165034	ENSGT00510000046908.a.a.a #30	ENSGT00940000158770 #29	ENSGT00940000164978	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047 #19	ENSGT00940000159354	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153322.B.d	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00390000015484.i	ENSGT01050000244840.A.b.a	ENSGT00940000157465	ENSGT00940000178460	ENSGT00940000158554
Neopterygii	ANCESTRAL SPECIES	53	ENSGT00940000166166	ENSGT00430000032979	ENSGT00950000183054.a.a.b	ENSGT00390000006954 #35	ENSGT00940000165034	ENSGT00510000046908.a.a.a #30	ENSGT00940000158770 #29	ENSGT00940000164978	ENSGT00390000017153.b	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047 #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153322.B.d.b	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157465	ENSGT00940000178460	ENSGT00940000158554	ENSGT00390000006124
Osteoglossocephalai	ANCESTRAL SPECIES	57										ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047 #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552
Clupeocephala	ANCESTRAL SPECIES	28	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a
Otomorpha	ANCESTRAL SPECIES	34	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810
Clupeiformes	ANCESTRAL SPECIES	37	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000155973.a	ENSGT00940000164374.B.c.a.c	ENSGT00940000159358	ENSGT00530000063113.C	ENSGT00940000159044	ENSGT00940000157079.a	ENSGT01100000263630	ENSGT00660000097471	ENSGT00940000160515	ENSGT00390000017980
Atlantic herring	MODERN SPECIES	12	ubl7b (ENSCHAG00000019365)	SHF (ENSCHAG00000019419)	ube2q1 (ENSCHAG00000019433)	CHRNB4 (ENSCHAG00000019648)	CHRNA3 (ENSCHAG00000019654)	tmed9 (ENSCHAG00000019777)	b4galt7 (ENSCHAG00000019837)	ENSCHAG00000019860	emx3 (ENSCHAG00000019874)	ENSCHAG00000019893 #28	gm2a (ENSCHAG00000019897) #27	FAT2 (ENSCHAG00000019916) #23	mtnr1al (ENSCHAG00000020755)	SLC36A1 (ENSCHAG00000020792) #24	atox1 (ENSCHAG00000020924)	sparc (ENSCHAG00000020940) #22	g3bp1 (ENSCHAG00000021109) #20	glra1 (ENSCHAG00000021171) #19	slc25a48 (ENSCHAG00000021600)	cplx2 (ENSCHAG00000021614)	ENSCHAG00000021665	thoc3 (ENSCHAG00000000607)	npy7r (ENSCHAG00000000679)	trim105 (ENSCHAG00000000709)	flt4 (ENSCHAG00000001387)	ergic1 (ENSCHAG00000004696)	dusp1 (ENSCHAG00000005209)	neurl1b (ENSCHAG00000005241)	spink2.1 (ENSCHAG00000005287)	mtnr1c (ENSCHAG00000005323)	vma21 (ENSCHAG00000005348)
Denticle herring	MODERN SPECIES	9	ARHGEF37 (ENSDCDG00000033535)	ENSDCDG00000033537	pde6a (ENSDCDG00000033541)	SLC26A2 (ENSDCDG00000033556)	HTR4 (ENSDCDG00000033559)	lman2 (ENSDCDG00000033561)	tmed9 (ENSDCDG00000033562)	b4galt7 (ENSDCDG00000033566)	emx3 (ENSDCDG00000033567)	ENSDCDG00000033569 #28	gm2a (ENSDCDG00000033571) #27	FAT2 (ENSDCDG00000033575) #23	mtnr1al (ENSDCDG00000033618)	SLC36A1 (ENSDCDG00000033621) #24	atox1 (ENSDCDG00000033625)	sparc (ENSDCDG00000033630) #22	g3bp1 (ENSDCDG00000033635) #20	glra1 (ENSDCDG00000033650) #19	slc25a48 (ENSDCDG00000033686)	cplx2 (ENSDCDG00000033689)	thoc3 (ENSDCDG00000033692)	npy7r (ENSDCDG00000033695)	trim105 (ENSDCDG00000033696)	flt4 (ENSDCDG00000033728)	ergic1 (ENSDCDG00000033887)	dusp1 (ENSDCDG00000033931)	neurl1b (ENSDCDG00000033933)	spink2.1 (ENSDCDG00000033936)	GPR50 (ENSDCDG00000033937)	ENSDCDG00000033939	ENSDCDG00000033941
Otophysi	ANCESTRAL SPECIES	43	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b
Characiphysae	ANCESTRAL SPECIES	7	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a
Channel catfish	MODERN SPECIES	27	gpr137 (ENSIPUG00000000866)	ENSIPUG00000000877	lman2 (ENSIPUG00000000893)	tmed9 (ENSIPUG00000000938)	b4galt7 (ENSIPUG00000000943)	ENSIPUG00000000995	emx1 (ENSIPUG00000000998)	ccdc69 (ENSIPUG00000001017) #28	Gm2a (ENSIPUG00000001028) #27	fat2 (ENSIPUG00000001036) #23	ENSIPUG00000001065	ENSIPUG00000001068	mtnr1al (ENSIPUG00000001076)	SLC36A1 (ENSIPUG00000001090) #24	atox1 (ENSIPUG00000001118)	sparc (ENSIPUG00000001149) #22	G3BP (ENSIPUG00000001190) #20	glra1 (ENSIPUG00000001240) #19	slc25a48 (ENSIPUG00000001259)	cplx2 (ENSIPUG00000001281)	thoc3 (ENSIPUG00000001292)	ENSIPUG00000001315	ENSIPUG00000001321	tmem216 (ENSIPUG00000001353)	ENSIPUG00000001366	HTR4 (ENSIPUG00000001401)	slc26a2 (ENSIPUG00000001460)	PDE6A (ENSIPUG00000001474)	Ppargc1b (ENSIPUG00000001584)	arhgef37 (ENSIPUG00000001613)	slit3 (ENSIPUG00000001656)
Characiphysae_b	ANCESTRAL SPECIES	7	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a
Characoidei	ANCESTRAL SPECIES	2	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a
Red-bellied piranha	MODERN SPECIES	14	tgfbi (ENSPNAG00000025091)	smad5 (ENSPNAG00000025079)	syvn1 (ENSPNAG00000003864)	gpr137 (ENSPNAG00000025039)	ENSPNAG00000025026	lman2 (ENSPNAG00000006253)	tmed9 (ENSPNAG00000024939)	b4galt7 (ENSPNAG00000024930)	emx3 (ENSPNAG00000007051)	ENSPNAG00000006096 #28	gm2a (ENSPNAG00000024828) #27	FAT2 (ENSPNAG00000007050) #23	mtnr1al (ENSPNAG00000024675)	ENSPNAG00000024665 #24	atox1 (ENSPNAG00000024625)	sparc (ENSPNAG00000024599) #22	g3bp1 (ENSPNAG00000024583) #20	glra1 (ENSPNAG00000024478) #19	slc25a48 (ENSPNAG00000024397)	cplx2 (ENSPNAG00000024357)	thoc3 (ENSPNAG00000005252)	ENSPNAG00000024308	ENSPNAG00000024298	tmem216 (ENSPNAG00000024234)	ENSPNAG00000024218	ENSPNAG00000024173	HTR4 (ENSPNAG00000024109)	SLC26A2 (ENSPNAG00000024034)	pde6a (ENSPNAG00000024013)	ENSPNAG00000023871	ARHGEF37 (ENSPNAG00000023761)
Mexicana tetra	MODERN SPECIES	16	smad5 (ENSAMXG00000010992)	syvn1 (ENSAMXG00000003339)	gpr137 (ENSAMXG00000029581)	ENSAMXG00000010972	lman2 (ENSAMXG00000029169)	ENSAMXG00000043673	tmed9 (ENSAMXG00000010940)	b4galt7 (ENSAMXG00000010933)	emx3 (ENSAMXG00000043171)	ENSAMXG00000031561 #28	gm2a (ENSAMXG00000029373) #27	FAT2 (ENSAMXG00000010901) #23	mtnr1al (ENSAMXG00000010894)	SLC36A1 (ENSAMXG00000010886) #24	atox1 (ENSAMXG00000033464)	sparc (ENSAMXG00000029677) #22	g3bp1 (ENSAMXG00000010833) #20	glra1 (ENSAMXG00000042508) #19	slc25a48 (ENSAMXG00000039070)	cplx2 (ENSAMXG00000010761)	thoc3 (ENSAMXG00000010750)	ENSAMXG00000010728	tmem216 (ENSAMXG00000010702)	ENSAMXG00000010685	ENSAMXG00000010682	ENSAMXG00000010681	ENSAMXG00000029033	HTR4 (ENSAMXG00000031787)	SLC26A2 (ENSAMXG00000040557)	pde6a (ENSAMXG00000010673)	ENSAMXG00000010665
Electric eel	MODERN SPECIES	70	smad5 (ENSEEEG00000014666)	syvn1 (ENSEEEG00000014663)	gpr137 (ENSEEEG00000014660)	ENSEEEG00000014655	lman2 (ENSEEEG00000014650)	tmed9 (ENSEEEG00000014647)	b4galt7 (ENSEEEG00000014644)	emx3 (ENSEEEG00000014643)	ENSEEEG00000014641 #28	gm2a (ENSEEEG00000014640) #27	FAT2 (ENSEEEG00000014621) #23	mtnr1al (ENSEEEG00000014617)	ENSEEEG00000014616	SLC36A1 (ENSEEEG00000014375) #24	atox1 (ENSEEEG00000014358)	sparc (ENSEEEG00000014307) #22	g3bp1 (ENSEEEG00000014297) #20	glra1 (ENSEEEG00000014294) #19	slc25a48 (ENSEEEG00000014291)	cplx2 (ENSEEEG00000014289)	thoc3 (ENSEEEG00000014288)	ENSEEEG00000014285	ENSEEEG00000014282	ENSEEEG00000014280	ENSEEEG00000014274	tmem216 (ENSEEEG00000014270)	HTR4 (ENSEEEG00000014266)	SLC26A2 (ENSEEEG00000014256)	pde6a (ENSEEEG00000014228)	ENSEEEG00000014222	ARHGEF37 (ENSEEEG00000014219)
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00940000158355	ENSGT00940000159747.eb.a	ENSGT00940000159747.eb.b	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288.t #27	ENSGT00390000003288.s #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000156471.b.h	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a	ENSGT00940000159322	ENSGT00390000000618.d	ENSGT00950000183033.a.b.b	ENSGT00940000157891
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	604					ENSGT00950000183059.a.d	ENSGT00940000158355.f	ENSGT00940000159747.eb.a	ENSGT00940000157712.l	ENSGT00940000157425.A.b	ENSGT00950000183026.A.a.b.b #28	ENSGT00390000003288.s.a.b #27	ENSGT00940000158507.c #23	ENSGT00940000165176.b	ENSGT00940000156583.k #24	ENSGT00940000163780.s.b	ENSGT00510000046787.e.b.i #22	ENSGT00390000011365.a.ic #20	ENSGT00940000159047.d.b #19	ENSGT00940000159354.b	ENSGT00950000182938.b.b.a.f	ENSGT00510000048167.b.b.b
Goldfish	MODERN SPECIES	32	tgfbi (ENSCARG00000055704)	smad5 (ENSCARG00000055822)	syvn1 (ENSCARG00000055876)	gpr137 (ENSCARG00000055956)	ENSCARG00000055982	lman2 (ENSCARG00000056024)	tmed9 (ENSCARG00000056412)	b4galt7 (ENSCARG00000056461)	emx3 (ENSCARG00000056500)	ENSCARG00000056521 #28	ENSCARG00000056548	FAT2 (ENSCARG00000056639) #23	mtnr1al (ENSCARG00000056835)	SLC36A1 (ENSCARG00000056866) #24	atox1 (ENSCARG00000057609)	sparc (ENSCARG00000057630) #22	g3bp1 (ENSCARG00000057707) #20	glra1 (ENSCARG00000057880) #19	slc25a48 (ENSCARG00000058076)	cplx2 (ENSCARG00000058129)	ENSCARG00000058150	ENSCARG00000058170	slit3 (ENSCARG00000058217)	CXCL14 (ENSCARG00000058412)	fam13b (ENSCARG00000058522)	KLHL3 (ENSCARG00000058914)	ENSCARG00000059629	dpf2l (ENSCARG00000059652)	CHRM1 (ENSCARG00000060139)	nkx2.5 (ENSCARG00000060156)	stc2a (ENSCARG00000060172)
Cyprininae_a	ANCESTRAL SPECIES	561										ENSGT00950000183026.A.a.b.b #28	ENSGT00390000003288.s.a.b #27	ENSGT00940000158507.c #23	ENSGT00940000165176.b	ENSGT00940000156583.k #24	ENSGT00940000163780.s.b	ENSGT00510000046787.e.b.i #22	ENSGT00390000011365.a.ic #20	ENSGT00940000159047.d.a #19	ENSGT00940000159354.a	ENSGT00950000182938.b.b.a.e	ENSGT00940000166119
Golden-line barbel	MODERN SPECIES	249	tgfbi (ENSSGRG00000019758)	ENSSGRG00000020035	ENSSGRG00000020036	syvn1 (ENSSGRG00000020042)	gpr137 (ENSSGRG00000020071)	ENSSGRG00000020076	ENSSGRG00000020221	tmed9 (ENSSGRG00000020222)	b4galt7 (ENSSGRG00000020223)	emx3 (ENSSGRG00000020227)	ENSSGRG00000020234 #28	FAT2 (ENSSGRG00000020240) #23	mtnr1al (ENSSGRG00000020291)	ENSSGRG00000020293 #24	atox1 (ENSSGRG00000020298)	sparc (ENSSGRG00000020328) #22	g3bp1 (ENSSGRG00000020403) #20	glra1 (ENSSGRG00000020404) #19	slc25a48 (ENSSGRG00000020411)	cplx2 (ENSSGRG00000020412)	cplx2 (ENSSGRG00000020414)	thoc3 (ENSSGRG00000020416)	ENSSGRG00000020417	SLC26A2 (ENSSGRG00000020418)	HTR4 (ENSSGRG00000020419)	ENSSGRG00000020423	ENSSGRG00000020424	ENSSGRG00000020426	tmem216 (ENSSGRG00000020427)	pde6a (ENSSGRG00000020428)	ENSSGRG00000020645
Common carp reference	MODERN SPECIES	20	tgfbi (ENSCCRG00000028420)	smad5 (ENSCCRG00000006190)	syvn1 (ENSCCRG00000022570)	gpr137 (ENSCCRG00000063404)	ENSCCRG00000039346	lman2 (ENSCCRG00000056551)	tmed9 (ENSCCRG00000001604)	b4galt7 (ENSCCRG00000073337)	emx3 (ENSCCRG00000082787)	gm2a (ENSCCRG00000076179) #27	ENSCCRG00000072739 #28	ENSCCRG00000049734 #23	mtnr1al (ENSCCRG00000081175)	ENSCCRG00000028228 #24	atox1 (ENSCCRG00000028230)	sparc (ENSCCRG00000035673) #22	g3bp1 (ENSCCRG00000036348) #20	glra1 (ENSCCRG00000073290) #19	slc25a48 (ENSCCRG00000007904)	cplx2 (ENSCCRG00000069670)	thoc3 (ENSCCRG00000038043)	ENSCCRG00000038255	ENSCCRG00000069703	ENSCCRG00000057818	ENSCCRG00000062068	ENSCCRG00000062998	tmem216 (ENSCCRG00000005459)	pde6a (ENSCCRG00000005589)	ENSCCRG00000017374	ENSCCRG00000010390	slit3 (ENSCCRG00000060113)
Cyprininae	ANCESTRAL SPECIES	79	ENSGT00940000153986.b.b.a	ENSGT00940000157743.o	ENSGT00940000153986.b.b.b	ENSGT00950000183059.a.c	ENSGT00940000158355.e	ENSGT00940000159747.eb.b.a	ENSGT00940000157712.k	ENSGT00940000157425.A.a	ENSGT00950000183026.A.a.b.a #28	ENSGT00390000003288.t #27	ENSGT00390000003288.s.a.a #27	ENSGT00940000158507.d #23	ENSGT00940000165176.a	ENSGT00940000156583.l #24	ENSGT00940000163780.s.a	ENSGT00510000046787.e.b.j #22	ENSGT00390000011365.a.jc #20	ENSGT00940000159047.d.a #19	ENSGT00940000159354.a	ENSGT00950000182938.b.b.a.e	ENSGT00940000166119	ENSGT00940000158129	ENSGT00510000048167.b.b.a	ENSGT01100000263544.c.a.a.a.b	ENSGT00940000155983.a.a.d	ENSGT00940000153322.B.d.a.t	ENSGT01030000235165.a	ENSGT00950000183137.b.b.d	ENSGT00950000183088.a.a	ENSGT00940000159322.e	ENSGT00390000000618.c
Goldfish	MODERN SPECIES	5	smad5 (ENSCARG00000004735)	syvn1 (ENSCARG00000004758)	gpr137 (ENSCARG00000004784)	ENSCARG00000004803	lman2 (ENSCARG00000004838)	TMED9 (ENSCARG00000005242)	b4galt7 (ENSCARG00000005267)	emx3 (ENSCARG00000005275)	ENSCARG00000005283 #28	ENSCARG00000005291 #27	gm2a (ENSCARG00000005297) #27	FAT2 (ENSCARG00000005329) #23	mtnr1al (ENSCARG00000005394)	SLC36A1 (ENSCARG00000005412) #24	atox1 (ENSCARG00000005458)	sparc (ENSCARG00000005487) #22	g3bp1 (ENSCARG00000005647) #20	glra1 (ENSCARG00000005710) #19	slc25a48 (ENSCARG00000006045)	slc25a48 (ENSCARG00000006051)	cplx2 (ENSCARG00000006070)	thoc3 (ENSCARG00000006099)	ENSCARG00000006164	SLC26A2 (ENSCARG00000006251)	HTR4 (ENSCARG00000006270)	ENSCARG00000006303	ENSCARG00000006342	ENSCARG00000006371	ENSCARG00000006385	ENSCARG00000006435	slit3 (ENSCARG00000006589)
Cyprininae_a	ANCESTRAL SPECIES	104	ENSGT00530000063860.a.i	ENSGT00940000155437.ib.a	ENSGT00940000157743.o	ENSGT00940000153986.b.b.b	ENSGT00950000183059.a.c	ENSGT00940000158355.e	ENSGT00940000159747.eb.b.a	ENSGT00940000157712.k	ENSGT00940000157425.A.a	ENSGT00950000183026.A.a.b.a #28	ENSGT00390000003288.s.a.a #27	ENSGT00940000158507.d #23	ENSGT00940000165176.a	ENSGT00940000156583.l #24	ENSGT00940000163780.s.a	ENSGT00510000046787.e.b.j #22	ENSGT00390000011365.a.jc #20	ENSGT00940000159047.d.b #19	ENSGT00940000159354.b	ENSGT00950000182938.b.b.a.f	ENSGT00940000158129	ENSGT00510000048167.b.b.b	ENSGT00510000048167.b.b.a	ENSGT01100000263544.c.a.a.a.b	ENSGT00940000155983.a.a.d	ENSGT00940000153322.B.d.a.t	ENSGT01030000235165.a	ENSGT00950000183137.b.b.d	ENSGT00950000183088.a.a.e	ENSGT00940000159322.e	ENSGT00390000000618.c
Common carp reference	MODERN SPECIES	35	tgfbi (ENSCCRG00000006206)	smad5 (ENSCCRG00000081851)	syvn1 (ENSCCRG00000028362)	gpr137 (ENSCCRG00000022573)	ENSCCRG00000028346	lman2 (ENSCCRG00000001683)	ENSCCRG00000053896	b4galt7 (ENSCCRG00000001570)	emx3 (ENSCCRG00000067039)	ENSCCRG00000042862 #28	gm2a (ENSCCRG00000042859) #27	ENSCCRG00000026071 #23	mtnr1al (ENSCCRG00000035616)	ENSCCRG00000035625 #24	atox1 (ENSCCRG00000035645)	sparc (ENSCCRG00000059331) #22	g3bp1 (ENSCCRG00000076121) #20	glra1 (ENSCCRG00000036510) #19	slc25a48 (ENSCCRG00000038006)	cplx2 (ENSCCRG00000075510)	ENSCCRG00000075181	ENSCCRG00000075289	ENSCCRG00000059770	ENSCCRG00000050917	ENSCCRG00000005437	ENSCCRG00000010355	ENSCCRG00000010365	ENSCCRG00000010399	slit3 (ENSCCRG00000062711)	ENSCCRG00000061370	fam13b (ENSCCRG00000007416)
Golden-line barbel	MODERN SPECIES	1130													ENSSGRG00000037272 #28	FAT2 (ENSSGRG00000037270) #23	SLC36A1 (ENSSGRG00000037267) #24	sparc (ENSSGRG00000037201) #22	g3bp1 (ENSSGRG00000037198) #20	glra1 (ENSSGRG00000037189) #19
Zebrafish	MODERN SPECIES	5	syvn1 (ENSDARG00000017842)	gpr137 (ENSDARG00000037244)	ENSDARG00000061845	lman2 (ENSDARG00000061854)	tmed9 (ENSDARG00000004261)	pimr212 (ENSDARG00000037246)	b4galt7 (ENSDARG00000021899)	emx3 (ENSDARG00000020417)	ENSDARG00000111091 #28	GM2A (ENSDARG00000107431) #27	gm2a (ENSDARG00000088439) #27	FAT2 (ENSDARG00000018923) #23	mtnr1al (ENSDARG00000012057)	SLC36A1 (ENSDARG00000075618) #24	atox1 (ENSDARG00000087693)	sparc (ENSDARG00000019353) #22	g3bp1 (ENSDARG00000017741) #20	glra1 (ENSDARG00000012019) #19	slc25a48 (ENSDARG00000021250)	cplx2 (ENSDARG00000061918)	thoc3 (ENSDARG00000056517)	ENSDARG00000056519	SLC26A2 (ENSDARG00000011618)	HTR4 (ENSDARG00000061940)	ENSDARG00000099345	ENSDARG00000000394	ENSDARG00000001162	tmem216 (ENSDARG00000091576)	pde6a (ENSDARG00000000380)	ENSDARG00000101569	ENSDARG00000002463
Euteleosteomorpha	ANCESTRAL SPECIES	9	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165
Acanthomorphata	ANCESTRAL SPECIES	214												ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b	ENSGT00950000183137.b.b	ENSGT00950000183088.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT01020000231038	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00970000197534
Tiger tail seahorse	MODERN SPECIES	181	ccnb3 (ENSHCOG00000002952)	htr2cl1 (ENSHCOG00000002965)	zgc:109889 (ENSHCOG00000003025)	ENSHCOG00000003061	NFKB1 (ENSHCOG00000003095)	DGKQ (ENSHCOG00000003297)	mgat4b (ENSHCOG00000003347)	canx (ENSHCOG00000003371)	MAML1 (ENSHCOG00000003375)	LTC4S (ENSHCOG00000003387)	ENSHCOG00000003416	emx3 (ENSHCOG00000000103)	b4galt7 (ENSHCOG00000003445)	tmed9 (ENSHCOG00000003452)	tmem216 (ENSHCOG00000003458)	sparc (ENSHCOG00000003466) #22	g3bp1 (ENSHCOG00000003474) #20	glra1 (ENSHCOG00000003488) #19	slc25a48 (ENSHCOG00000003494)	cplx2 (ENSHCOG00000003503)	thoc3 (ENSHCOG00000003522)	ENSHCOG00000003546	gm2a (ENSHCOG00000003555) #27	PCDH12 (ENSHCOG00000003567)	PCDH1 (ENSHCOG00000003586)	atox1 (ENSHCOG00000003601)	mbnl3 (ENSHCOG00000003609)	rap2c (ENSHCOG00000000689)	zgc:92907 (ENSHCOG00000003628)	ENSHCOG00000003697	FOXO4 (ENSHCOG00000003716)
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A
Pomacentridae	ANCESTRAL SPECIES	58	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT00940000156471.b.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b.d	ENSGT00940000177596
Pomacentridae_A	ANCESTRAL SPECIES	60	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b.d	ENSGT00940000177596
Amphiprion	ANCESTRAL SPECIES	86	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B.g	ENSGT00390000013344.g.a	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT01090000260059.a.b.b.b.a.d.a.a.b.b.a.b	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00390000003288 #27	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.b.h	ENSGT00940000160403	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b.d
Orange clownfish	MODERN SPECIES	4	ELP1 (ENSAPEG00000001949)	ARHGEF37 (ENSAPEG00000001968)	ENSAPEG00000002056	ENSAPEG00000002065	ENSAPEG00000002142	ENSAPEG00000002162	pde6a (ENSAPEG00000002213)	SLC26A2 (ENSAPEG00000002310)	HTR4 (ENSAPEG00000002336)	lman2 (ENSAPEG00000002391)	FAT2 (ENSAPEG00000002455) #23	mtnr1al (ENSAPEG00000002565)	ENSAPEG00000002913	SLC36A1 (ENSAPEG00000002957) #24	atox1 (ENSAPEG00000003010)	sparc (ENSAPEG00000003035) #22	g3bp1 (ENSAPEG00000003082) #20	glra1 (ENSAPEG00000003138) #19	slc25a48 (ENSAPEG00000003175)	cplx2 (ENSAPEG00000003197)	ENSAPEG00000003204	thoc3 (ENSAPEG00000003216)	ENSAPEG00000003233	ENSAPEG00000003257	gm2a (ENSAPEG00000003318) #27	ENSAPEG00000003350	PCDH12 (ENSAPEG00000003389)	SIL1 (ENSAPEG00000003396)	uvssa (ENSAPEG00000003434)	ENSAPEG00000003451	nkx1.2lb (ENSAPEG00000003459)
Clown anemonefish	MODERN SPECIES	436								pde6a (ENSAOCG00000023185)	SLC26A2 (ENSAOCG00000023193)	HTR4 (ENSAOCG00000023228)	lman2 (ENSAOCG00000023273)	FAT2 (ENSAOCG00000023321) #23	mtnr1al (ENSAOCG00000023656)	SLC36A1 (ENSAOCG00000001733) #24	atox1 (ENSAOCG00000023733)	sparc (ENSAOCG00000001739) #22	g3bp1 (ENSAOCG00000012401) #20	fkbp2 (ENSAOCG00000000764)	ENSAOCG00000012465	MELTF (ENSAOCG00000012487)	ENSAOCG00000012728
Spiny chromis	MODERN SPECIES	521													mtnr1al (ENSAPOG00000019136)	SLC36A1 (ENSAPOG00000019233) #24	atox1 (ENSAPOG00000019254)	sparc (ENSAPOG00000019275) #22	g3bp1 (ENSAPOG00000019362) #20	glra1 (ENSAPOG00000019412) #19
Bicolor damselfish	MODERN SPECIES	281											lman2 (ENSSPAG00000013526)	FAT2 (ENSSPAG00000013542) #23	mtnr1al (ENSSPAG00000013624)	SLC36A1 (ENSSPAG00000014053) #24	atox1 (ENSSPAG00000014098)	sparc (ENSSPAG00000014103) #22	g3bp1 (ENSSPAG00000014125) #20	glra1 (ENSSPAG00000014160) #19	slc25a48 (ENSSPAG00000014186)	cplx2 (ENSSPAG00000014202)	thoc3 (ENSSPAG00000014229)	COG1 (ENSSPAG00000014267)	ENSSPAG00000014336
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00940000155374.g.b	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000178166	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000177647	ENSGT00980000198740	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A
Pseudocrenilabrinae	ANCESTRAL SPECIES	27	ENSGT00940000155521.a.a	ENSGT00940000160403	ENSGT00390000003288 #27	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000177647	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000159354	ENSGT00940000159047.d #19	ENSGT00390000011365.a #20	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b.b	ENSGT00950000183137.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	31	ENSGT00940000181346	ENSGT00940000160403	ENSGT00390000003288 #27	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000177647	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000159354	ENSGT00940000159047.d #19	ENSGT00390000011365.a #20	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b.b	ENSGT00950000183137.b.b
Haplochromini	ANCESTRAL SPECIES	25	ENSGT00940000155521.a.a	ENSGT00940000160403	ENSGT00390000003288 #27	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000177647	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000159354	ENSGT00940000159047.d #19	ENSGT00390000011365.a #20	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b.b.c	ENSGT00940000156471.b.b.d	ENSGT00950000183137.b.b
Haplochromini_A	ANCESTRAL SPECIES	28	ENSGT00940000155521.a.a	ENSGT00940000160403	ENSGT00390000003288 #27	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000177647	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000159354	ENSGT00940000159047.d #19	ENSGT00390000011365.a #20	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b.b.c	ENSGT00940000156471.b.b.d	ENSGT00950000183137.b.b
Haplochromini_B	ANCESTRAL SPECIES	45	ENSGT00940000155521.a.a	ENSGT00940000160403	ENSGT00390000003288 #27	ENSGT00510000048167.b.b	ENSGT00980000198740	ENSGT00940000177647	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000159354	ENSGT00940000159047.d #19	ENSGT00390000011365.a #20	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00940000158355	ENSGT00940000155983.a.a	ENSGT01100000263544.c.a.a.a	ENSGT00940000156471.b.b.c	ENSGT00940000156471.b.b.d	ENSGT00950000183137.b.b	ENSGT00940000166278.B.b.b.e.b.a
Eastern happy	MODERN SPECIES	11	ENSACLG00000017142	ENSACLG00000017193	thoc3 (ENSACLG00000017219)	cplx2 (ENSACLG00000017269)	ENSACLG00000017283	slc25a48 (ENSACLG00000017299)	ENSACLG00000017366	glra1 (ENSACLG00000017381) #19	g3bp1 (ENSACLG00000017400) #20	FAT2 (ENSACLG00000017446) #23	mtnr1al (ENSACLG00000017502)	ENSACLG00000017808	SLC36A1 (ENSACLG00000017816) #24	ENSACLG00000017836	atox1 (ENSACLG00000017840)	sparc (ENSACLG00000017854) #22	lman2 (ENSACLG00000017897)	HTR4 (ENSACLG00000018039)	SLC26A2 (ENSACLG00000018100)	pde6a (ENSACLG00000018110)	ENSACLG00000018203	ENSACLG00000018214	ENSACLG00000018304	ENSACLG00000018344	SLITRK2 (ENSACLG00000018391)	ENSACLG00000018438	ENSACLG00000018444	ENSACLG00000018450	hspa9 (ENSACLG00000018511)	polr2b (ENSACLG00000018568)	igfbp7 (ENSACLG00000018703)
Zebra mbuna	MODERN SPECIES	1102	acsl1b (ENSMZEG00005004849)	CASP3 (ENSMZEG00005004833)	ENSMZEG00005004823	ENSMZEG00005004814	irf2 (ENSMZEG00005004806)	SLITRK2 (ENSMZEG00005004787)	ENSMZEG00005004777	ENSMZEG00005004766	ENSMZEG00005004748	ENSMZEG00005004736	ENSMZEG00005004723	FAT2 (ENSMZEG00005004584) #23	mtnr1al (ENSMZEG00005004554)	SLC36A1 (ENSMZEG00005004521) #24	atox1 (ENSMZEG00005004498)	sparc (ENSMZEG00005004476) #22	lman2 (ENSMZEG00005004451)	HTR4 (ENSMZEG00005004414)	SLC26A2 (ENSMZEG00005004404)	pde6a (ENSMZEG00005004347)	hspa9 (ENSMZEG00005004296)	ENSMZEG00005004284	PCDH1 (ENSMZEG00005004220)	ENSMZEG00005004199	tmem216 (ENSMZEG00005004180)	TMED9 (ENSMZEG00005004161)	b4galt7 (ENSMZEG00005004139)	emx3 (ENSMZEG00005004124)	ENSMZEG00005004113 #28	LTC4S (ENSMZEG00005004105)	MAML1 (ENSMZEG00005004071)
P. nyererei	MODERN SPECIES	403										glra1 (ENSPNYG00000003130) #19	g3bp1 (ENSPNYG00000003109) #20	FAT2 (ENSPNYG00000002951) #23	mtnr1al (ENSPNYG00000002639)	SLC36A1 (ENSPNYG00000002584) #24	atox1 (ENSPNYG00000002572)	sparc (ENSPNYG00000002557) #22	lman2 (ENSPNYG00000002508)	HTR4 (ENSPNYG00000002465)	pde6a (ENSPNYG00000002332)	ENSPNYG00000002312	ENSPNYG00000002297	SLITRK2 (ENSPNYG00000002279)
Burton s mouthbrooder	MODERN SPECIES	661										glra1 (ENSHBUG00000011656) #19	g3bp1 (ENSHBUG00000011664) #20	FAT2 (ENSHBUG00000011677) #23	mtnr1al (ENSHBUG00000000316)	SLC36A1 (ENSHBUG00000011692) #24	atox1 (ENSHBUG00000011702)	sparc (ENSHBUG00000011708) #22	lman2 (ENSHBUG00000011735)
Lyretail cichlid	MODERN SPECIES	341	PCDH12 (ENSNBRG00000013849)	gm2a (ENSNBRG00000013855) #27	ENSNBRG00000013871	ENSNBRG00000013910	thoc3 (ENSNBRG00000013917)	cplx2 (ENSNBRG00000013942)	ENSNBRG00000013963	ENSNBRG00000013981	slc25a48 (ENSNBRG00000014029)	glra1 (ENSNBRG00000014047) #19	g3bp1 (ENSNBRG00000014110) #20	FAT2 (ENSNBRG00000014129) #23	mtnr1al (ENSNBRG00000014190)	SLC36A1 (ENSNBRG00000014207) #24	atox1 (ENSNBRG00000014234)	sparc (ENSNBRG00000014248) #22	lman2 (ENSNBRG00000014278)	HTR4 (ENSNBRG00000014298)	SLC26A2 (ENSNBRG00000014354)	pde6a (ENSNBRG00000014374)	ENSNBRG00000014405
Nile tilapia	MODERN SPECIES	11	thoc3 (ENSONIG00000004291)	cplx2 (ENSONIG00000004287)	ENSONIG00000040032	ENSONIG00000004284	ENSONIG00000034689	ENSONIG00000029016	ENSONIG00000031819	slc25a48 (ENSONIG00000004280)	ENSONIG00000034220	glra1 (ENSONIG00000004272) #19	g3bp1 (ENSONIG00000004263) #20	ENSONIG00000028244	FAT2 (ENSONIG00000004254) #23	SLC36A1 (ENSONIG00000004246) #24	atox1 (ENSONIG00000042461)	sparc (ENSONIG00000004238) #22	lman2 (ENSONIG00000004227)	ENSONIG00000039619	ENSONIG00000036363	ENSONIG00000000448	ENSONIG00000034676	ENSONIG00000029076	ENSONIG00000033209	hvcn1 (ENSONIG00000011600)	ENSONIG00000011597	ENSONIG00000034724	ENSONIG00000036136	nkx1.2lb (ENSONIG00000011596)	uvssa (ENSONIG00000011593)	ENSONIG00000011591	spdl1 (ENSONIG00000011588)
Midas cichlid	MODERN SPECIES	104													mtnr1al (ENSACIG00000024322)	SLC36A1 (ENSACIG00000024321) #24	atox1 (ENSACIG00000024316)	sparc (ENSACIG00000024305) #22	g3bp1 (ENSACIG00000024294) #20	glra1 (ENSACIG00000024291) #19	slc25a48 (ENSACIG00000024289)	raly (ENSACIG00000024288)	ENSACIG00000024286	ahcy (ENSACIG00000024281)	ENSACIG00000024279	ENSACIG00000024278	ENSACIG00000024277	ENSACIG00000024274	pck1 (ENSACIG00000024272)	pmepa1 (ENSACIG00000024271)	ENSACIG00000024269	ccndbp1 (ENSACIG00000024264)	ENSACIG00000024261
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a	ENSGT00940000156526.a
Mangrove rivulus	MODERN SPECIES	126	CPLX1 (ENSKMAG00000003461)	SMU1 (ENSKMAG00000003389)	CPXM1 (ENSKMAG00000003199)	ELP1 (ENSKMAG00000003085)	ARHGEF37 (ENSKMAG00000003012)	ENSKMAG00000003000	pde6a (ENSKMAG00000002895)	SLC26A2 (ENSKMAG00000002858)	HTR4 (ENSKMAG00000002836)	lman2 (ENSKMAG00000002789)	ENSKMAG00000002772	FAT2 (ENSKMAG00000002653) #23	mtnr1al (ENSKMAG00000002623)	SLC36A1 (ENSKMAG00000002610) #24	atox1 (ENSKMAG00000002592)	sparc (ENSKMAG00000002580) #22	g3bp1 (ENSKMAG00000002530) #20	glra1 (ENSKMAG00000002468) #19
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015003408	SMU1 (ENSNFUG00015003412)	CU469518.1 (ENSNFUG00015003444)	IKBKAP (ENSNFUG00015003549)	PPARGC1B (ENSNFUG00015003601)	ENSNFUG00015003658	SLC26A2 (ENSNFUG00015003850)	ENSNFUG00015003852	ENSNFUG00015003857	ENSNFUG00015003868	HTR4 (ENSNFUG00015000208)	ENSNFUG00015000309 #23	mtnr1al (ENSNFUG00015000375)	SLC36A1 (ENSNFUG00015000398) #24	ENSNFUG00015000428	sparc (ENSNFUG00015000443) #22	G3BP1 (ENSNFUG00015000475) #20	glra1 (ENSNFUG00015000524) #19	ENSNFUG00015000567	ENSNFUG00015000569	ENSNFUG00015000575	ENSNFUG00015000582	thoc3 (ENSNFUG00015000586)	BX511257.1 (ENSNFUG00015000605)	GM2A (ENSNFUG00015000629) #27	PCDH12 (ENSNFUG00015000634)	ENSNFUG00015000640	ENSNFUG00015000647	ENSNFUG00015000654	PCDH1B (ENSNFUG00015000656)	ENSNFUG00015000666
Cyprinodontoidei	ANCESTRAL SPECIES	23	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209
NAME_4	ANCESTRAL SPECIES	23	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209
Mummichog	MODERN SPECIES	2190	CPLX1 (ENSFHEG00000013548)	SMU1 (ENSFHEG00000013585)	CPXM1 (ENSFHEG00000013615)	ELP1 (ENSFHEG00000013864)	ARHGEF37 (ENSFHEG00000013887)	ENSFHEG00000013904	pde6a (ENSFHEG00000013968)	SLC26A2 (ENSFHEG00000014001)	HTR4 (ENSFHEG00000014052)	lman2 (ENSFHEG00000014092)	ENSFHEG00000014102	FAT2 (ENSFHEG00000014164) #23	mtnr1al (ENSFHEG00000014772)	SLC36A1 (ENSFHEG00000014799) #24	atox1 (ENSFHEG00000014808)	sparc (ENSFHEG00000014851) #22	g3bp1 (ENSFHEG00000014921) #20	glra1 (ENSFHEG00000014957) #19	slc25a48 (ENSFHEG00000014982)	ENSFHEG00000015012	hs6st2 (ENSFHEG00000015019)	mbnl3 (ENSFHEG00000015097)	rap2c (ENSFHEG00000015109)	zgc:92907 (ENSFHEG00000015126)	ENSFHEG00000015140	FOXO4 (ENSFHEG00000015149)	ubl3b (ENSFHEG00000015205)	ENSFHEG00000015220	cfl1 (ENSFHEG00000015243)	atl3 (ENSFHEG00000015313)	ENSFHEG00000015333
Sheepshead minnow	MODERN SPECIES	171	ABCA1 (ENSCVAG00000005271)	SLC44A1 (ENSCVAG00000005295)	ENSCVAG00000005311	neurog1 (ENSCVAG00000005319)	ENSCVAG00000005325	ENSCVAG00000005337	ENSCVAG00000005349	EBF4 (ENSCVAG00000005393)	SLC26A2 (ENSCVAG00000005401)	HTR4 (ENSCVAG00000005422)	lman2 (ENSCVAG00000005444)	FAT2 (ENSCVAG00000005460) #23	mtnr1al (ENSCVAG00000006149)	SLC36A1 (ENSCVAG00000000178) #24	atox1 (ENSCVAG00000006172)	sparc (ENSCVAG00000006179) #22	g3bp1 (ENSCVAG00000006194) #20	glra1 (ENSCVAG00000006211) #19
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209
Poecilia	ANCESTRAL SPECIES	33			ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209
NAME_6	ANCESTRAL SPECIES	41			ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.d	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00950000183000.c.a.a	ENSGT00940000158566	ENSGT00940000166209.c
Sailfin molly	MODERN SPECIES	363														ENSPLAG00000009723 #24	atox1 (ENSPLAG00000009712)	sparc (ENSPLAG00000009701) #22	g3bp1 (ENSPLAG00000009678) #20	glra1 (ENSPLAG00000009593) #19	slc25a48 (ENSPLAG00000009559)	ENSPLAG00000009558	hs6st2 (ENSPLAG00000009532)	mbnl3 (ENSPLAG00000009523)	rap2c (ENSPLAG00000009493)	zgc:92907 (ENSPLAG00000009486)	ENSPLAG00000009474	FOXO4 (ENSPLAG00000009430)	ubl3b (ENSPLAG00000009424)	ENSPLAG00000000771	cfl1 (ENSPLAG00000009396)	atl3 (ENSPLAG00000009364)	ENSPLAG00000009328
Amazon molly	MODERN SPECIES	319							ENSPFOG00000005612	pde6a (ENSPFOG00000005692)	SLC26A2 (ENSPFOG00000006250)	HTR4 (ENSPFOG00000006342)	lman2 (ENSPFOG00000006470)	FAT2 (ENSPFOG00000006694) #23	mtnr1al (ENSPFOG00000024813)	SLC36A1 (ENSPFOG00000007576) #24	atox1 (ENSPFOG00000007849)	sparc (ENSPFOG00000007866) #22	g3bp1 (ENSPFOG00000007942) #20	glra1 (ENSPFOG00000008160) #19	slc25a48 (ENSPFOG00000008394)	ENSPFOG00000008455	hs6st2 (ENSPFOG00000008569)	mbnl3 (ENSPFOG00000008576)	rap2c (ENSPFOG00000008698)	zgc:92907 (ENSPFOG00000008711)	ENSPFOG00000008718	FOXO4 (ENSPFOG00000008795)	ubl3b (ENSPFOG00000008801)	ENSPFOG00000020747	cfl1 (ENSPFOG00000008862)	atl3 (ENSPFOG00000008872)	ENSPFOG00000021830
Guppy	MODERN SPECIES	440	zgc:174917 (ENSPREG00000007492)	SMU1 (ENSPREG00000007516)	CPXM1 (ENSPREG00000007548)	ELP1 (ENSPREG00000007602)	ARHGEF37 (ENSPREG00000007695)	ENSPREG00000007743	pde6a (ENSPREG00000007789)	SLC26A2 (ENSPREG00000007894)	HTR4 (ENSPREG00000007913)	ENSPREG00000007943	lman2 (ENSPREG00000007962)	FAT2 (ENSPREG00000007999) #23	mtnr1al (ENSPREG00000008094)	SLC36A1 (ENSPREG00000008299) #24	atox1 (ENSPREG00000008315)	sparc (ENSPREG00000008334) #22	g3bp1 (ENSPREG00000008376) #20	glra1 (ENSPREG00000008393) #19	slc25a48 (ENSPREG00000008440)	ENSPREG00000008476	hs6st2 (ENSPREG00000008516)	mbnl3 (ENSPREG00000008529)	rap2c (ENSPREG00000008551)	zgc:92907 (ENSPREG00000008705)	ENSPREG00000008716	FOXO4 (ENSPREG00000008731)	ubl3b (ENSPREG00000008737)	ENSPREG00000008747	cfl1 (ENSPREG00000008760)	atl3 (ENSPREG00000008772)	ENSPREG00000008785
Platyfish	MODERN SPECIES	15	SMU1 (ENSXMAG00000019096)	CPXM1 (ENSXMAG00000019113)	ELP1 (ENSXMAG00000019128)	ARHGEF37 (ENSXMAG00000019168)	ENSXMAG00000019179	pde6a (ENSXMAG00000019181)	SLC26A2 (ENSXMAG00000019224)	HTR4 (ENSXMAG00000019228)	fabp4a (ENSXMAG00000028083)	lman2 (ENSXMAG00000019231)	FAT2 (ENSXMAG00000019238) #23	mtnr1al (ENSXMAG00000019248)	SLC36A1 (ENSXMAG00000019249) #24	atox1 (ENSXMAG00000019253)	ENSXMAG00000022019	sparc (ENSXMAG00000019254) #22	g3bp1 (ENSXMAG00000019255) #20	glra1 (ENSXMAG00000019257) #19	ENSXMAG00000022787	slc25a48 (ENSXMAG00000028496)	ENSXMAG00000025700	hs6st2 (ENSXMAG00000013087)	mbnl3 (ENSXMAG00000013089)	rap2c (ENSXMAG00000022360)	zgc:92907 (ENSXMAG00000013102)	ENSXMAG00000013107	FOXO4 (ENSXMAG00000013124)	ubl3b (ENSXMAG00000023517)	ENSXMAG00000019512	cfl1 (ENSXMAG00000013129)	atl3 (ENSXMAG00000013131)
Oryzias	ANCESTRAL SPECIES	17	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Oryzias_b	ANCESTRAL SPECIES	47	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Indian medaka	MODERN SPECIES	37	PCGF3 (ENSOMEG00000020817)	CPLX1 (ENSOMEG00000020838)	SMU1 (ENSOMEG00000020867)	CPXM1 (ENSOMEG00000020904)	ELP1 (ENSOMEG00000021054)	ARHGEF37 (ENSOMEG00000021154)	ENSOMEG00000021279	pde6a (ENSOMEG00000021321)	SLC26A2 (ENSOMEG00000021337)	HTR4 (ENSOMEG00000021442)	lman2 (ENSOMEG00000021496)	FAT2 (ENSOMEG00000021558) #23	mtnr1al (ENSOMEG00000021575)	SLC36A1 (ENSOMEG00000021599) #24	atox1 (ENSOMEG00000021626)	sparc (ENSOMEG00000021664) #22	g3bp1 (ENSOMEG00000021702) #20	glra1 (ENSOMEG00000021793) #19	ENSOMEG00000021833	slc25a48 (ENSOMEG00000021884)	ENSOMEG00000021911	cplx2 (ENSOMEG00000021947)	thoc3 (ENSOMEG00000021977)	ENSOMEG00000022005	gm2a (ENSOMEG00000022026) #27	PCDH12 (ENSOMEG00000022043)	ENSOMEG00000022057	PCDH1 (ENSOMEG00000022101)	ENSOMEG00000022135	tmem216 (ENSOMEG00000022141)	tmed9 (ENSOMEG00000022161)
Javanese ricefish	MODERN SPECIES	1	CPLX1 (ENSOJAG00000003338)	SMU1 (ENSOJAG00000003282)	CPXM1 (ENSOJAG00000003183)	ELP1 (ENSOJAG00000003026)	ARHGEF37 (ENSOJAG00000003008)	ENSOJAG00000002980	SLC26A2 (ENSOJAG00000002886)	pde6a (ENSOJAG00000002703)	HTR4 (ENSOJAG00000002669)	lman2 (ENSOJAG00000002630)	ENSOJAG00000002615	FAT2 (ENSOJAG00000002493) #23	mtnr1al (ENSOJAG00000002461)	SLC36A1 (ENSOJAG00000002330) #24	atox1 (ENSOJAG00000002296)	sparc (ENSOJAG00000002111) #22	g3bp1 (ENSOJAG00000002007) #20	glra1 (ENSOJAG00000001876) #19	slc25a48 (ENSOJAG00000001835)	ENSOJAG00000001821	cplx2 (ENSOJAG00000001813)	ENSOJAG00000001798	ENSOJAG00000001769	gm2a (ENSOJAG00000001748) #27	PCDH12 (ENSOJAG00000001726)	PCDH1 (ENSOJAG00000001705)	ENSOJAG00000001686	LTC4S (ENSOJAG00000001666)	ENSOJAG00000001607	ENSOJAG00000001577	mgat4b (ENSOJAG00000022654)
Oryzias_a	ANCESTRAL SPECIES	65	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583.g #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a
Japanese Medaka HdrR	MODERN SPECIES	1	CPLX1 (ENSORLG00000026929)	SMU1 (ENSORLG00000011072)	CPXM1 (ENSORLG00000011088)	ELP1 (ENSORLG00000011140)	ARHGEF37 (ENSORLG00000011154)	ENSORLG00000011166	pde6a (ENSORLG00000023972)	SLC26A2 (ENSORLG00000011237)	HTR4 (ENSORLG00000011251)	lman2 (ENSORLG00000011264)	ENSORLG00000011281 #23	ENSORLG00000026927	mtnr1al (ENSORLG00000023936)	SLC36A1 (ENSORLG00000011309) #24	atox1 (ENSORLG00000022837)	sparc (ENSORLG00000011369) #22	g3bp1 (ENSORLG00000011422) #20	glra1 (ENSORLG00000011468) #19	slc25a48 (ENSORLG00000011483)	ENSORLG00000011492	ENSORLG00000024576	cplx2 (ENSORLG00000011505)	thoc3 (ENSORLG00000030384)	ENSORLG00000011511	gm2a (ENSORLG00000024392) #27	PCDH12 (ENSORLG00000011535)	ENSORLG00000027731	ENSORLG00000011559	ENSORLG00000026178	ENSORLG00000028614	ENSORLG00000029453
Chinese medaka	MODERN SPECIES	59															SLC36A1 (ENSOSIG00000014503) #24	sparc (ENSOSIG00000014526) #22	g3bp1 (ENSOSIG00000014554) #20	glra1 (ENSOSIG00000014560) #19	slc25a48 (ENSOSIG00000014563)	ENSOSIG00000014565	thoc3 (ENSOSIG00000014569)	ENSOSIG00000014575	gm2a (ENSOSIG00000014576) #27	PCDH12 (ENSOSIG00000014577)	PCDH1 (ENSOSIG00000014579)	ENSOSIG00000014587	ENSOSIG00000014588	tmem216 (ENSOSIG00000014598)	tmed9 (ENSOSIG00000014602)	b4galt7 (ENSOSIG00000014617)	ENSOSIG00000014618
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Tetraodontidae	ANCESTRAL SPECIES	104						ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.a.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27
Fugu	MODERN SPECIES	5	ENSTRUG00000031281	ENSTRUG00000029551	DGKQ (ENSTRUG00000002613)	mgat4b (ENSTRUG00000001769)	canx (ENSTRUG00000001564)	ARHGEF37 (ENSTRUG00000003793)	ENSTRUG00000020349	ENSTRUG00000033350	SLC26A2 (ENSTRUG00000001304)	HTR4 (ENSTRUG00000001258)	lman2 (ENSTRUG00000001185)	FAT2 (ENSTRUG00000030114) #23	mtnr1al (ENSTRUG00000027279)	SLC36A1 (ENSTRUG00000027926) #24	atox1 (ENSTRUG00000033174)	sparc (ENSTRUG00000014364) #22	g3bp1 (ENSTRUG00000024045) #20	ENSTRUG00000024876	slc25a48 (ENSTRUG00000002430)	cplx2 (ENSTRUG00000028930)	thoc3 (ENSTRUG00000002925)	ENSTRUG00000003172	gm2a (ENSTRUG00000023982) #27	ELP1 (ENSTRUG00000001880)	ENSTRUG00000026768	ENSTRUG00000031678	CPXM1 (ENSTRUG00000003892)	SMU1 (ENSTRUG00000004467)	CPLX1 (ENSTRUG00000030904)	PCGF3 (ENSTRUG00000027521)	SLC49A3 (ENSTRUG00000004972)
Tetraodon	MODERN SPECIES	12	fgf20b (ENSTNIG00000003619)	mmgt1 (ENSTNIG00000005954)	ints6l (ENSTNIG00000005907)	mospd1 (ENSTNIG00000005906)	pabir2 (ENSTNIG00000005905)	hprt1 (ENSTNIG00000005904)	phf6 (ENSTNIG00000005908)	gpc3 (ENSTNIG00000004678)	pde6a (ENSTNIG00000006320)	SLC26A2 (ENSTNIG00000006319)	HTR4 (ENSTNIG00000006318)	lman2 (ENSTNIG00000006317)	FAT2 (ENSTNIG00000006316) #23	mtnr1al (ENSTNIG00000012951)	SLC36A1 (ENSTNIG00000012952) #24	sparc (ENSTNIG00000012953) #22	g3bp1 (ENSTNIG00000012954) #20	glra1 (ENSTNIG00000012955) #19	slc25a48 (ENSTNIG00000012956)	ENSTNIG00000012957	thoc3 (ENSTNIG00000012958)	ENSTNIG00000012959	ENSTNIG00000012961	ENSTNIG00000012962	gm2a (ENSTNIG00000012960) #27	ENSTNIG00000001603	MAML1 (ENSTNIG00000012963)	LTC4S (ENSTNIG00000012964)	ENSTNIG00000000748 #28	emx3 (ENSTNIG00000012965)	b4galt7 (ENSTNIG00000001663)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Ballan wrasse	MODERN SPECIES	102	SMU1 (ENSLBEG00000011824)	CPXM1 (ENSLBEG00000011886)	ELP1 (ENSLBEG00000011982)	ARHGEF37 (ENSLBEG00000012222)	ENSLBEG00000012248	ENSLBEG00000012274	pde6a (ENSLBEG00000012336)	SLC26A2 (ENSLBEG00000012386)	HTR4 (ENSLBEG00000012464)	ENSLBEG00000012529	lman2 (ENSLBEG00000012552)	FAT2 (ENSLBEG00000012608) #23	mtnr1al (ENSLBEG00000012673)	SLC36A1 (ENSLBEG00000012690) #24	atox1 (ENSLBEG00000012711)	sparc (ENSLBEG00000012779) #22	g3bp1 (ENSLBEG00000012867) #20
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT00940000163551.i.a	ENSGT00940000155374.g.b	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000016876	ENSGT00920000149138	ENSGT00940000157929	ENSGT00940000154508.a.a.s.b	ENSGT00390000015511	ENSGT00940000153232.a.b.b	ENSGT00940000159063	ENSGT00940000160971	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
European seabass	MODERN SPECIES	12	ENSDLAG00005010149	ENSDLAG00005010305	PTCD3 (ENSDLAG00005011664)	ENSDLAG00005011769	ST3GAL5 (ENSDLAG00005013896)	ACSL1 (ENSDLAG00005013960)	ENSDLAG00005027637	CASP3 (ENSDLAG00005015698)	irf2 (ENSDLAG00005016403)	ENSDLAG00005016477	ENSDLAG00005016489	ENSDLAG00005016514 #23	mtnr1al (ENSDLAG00005016876)	ENSDLAG00005016898 #24	atox1 (ENSDLAG00005016941)	sparc (ENSDLAG00005016959) #22	g3bp1 (ENSDLAG00005017164) #20	glra1 (ENSDLAG00005017185) #19	slc25a48 (ENSDLAG00005017388)	ENSDLAG00005032272	thoc3 (ENSDLAG00005017426)	ENSDLAG00005017453	ENSDLAG00005027344	ENSDLAG00005002542	ENSDLAG00005031337	ENSDLAG00005017512 #27	ENSDLAG00005017516	ENSDLAG00005017536	ENSDLAG00005029692	ENSDLAG00005031216	ENSDLAG00005030962
Large yellow croaker	MODERN SPECIES		fgfrl1a (ENSLCRG00005015331)	ENSLCRG00005015328	ENSLCRG00005015325	spon2b (ENSLCRG00005015323)	zgc:136929 (ENSLCRG00005014374)	maea (ENSLCRG00005014353)	hnrnpa0b (ENSLCRG00005014351)	ENSLCRG00005014350	KLHL3 (ENSLCRG00005014349)	fam13b (ENSLCRG00005014346)	cxcl14 (ENSLCRG00005014343)	FAT2 (ENSLCRG00005013957) #23	mtnr1al (ENSLCRG00005013950)	SLC36A1 (ENSLCRG00005013944) #24	atox1 (ENSLCRG00005013942)	sparc (ENSLCRG00005013762) #22	g3bp1 (ENSLCRG00005013757) #20	glra1 (ENSLCRG00005013737) #19	ENSLCRG00005013734	ENSLCRG00005013733	VPS52 (ENSLCRG00005013729)	DCAF1 (ENSLCRG00005012647)	DOCK3 (ENSLCRG00005004429)	ENSLCRG00005004284	ENSLCRG00005004283	ENSLCRG00005004281	mfap3l (ENSLCRG00005004277) ##15	ino80b (ENSLCRG00005004275)	AADAT (ENSLCRG00005004263)	intu (ENSLCRG00005004258)	ENSLCRG00005004256
Gilthead seabream	MODERN SPECIES	9	CPLX1 (ENSSAUG00010005234)	ENSSAUG00010005232	SMU1 (ENSSAUG00010005230)	CPXM1 (ENSSAUG00010005030)	ELP1 (ENSSAUG00010005003)	ARHGEF37 (ENSSAUG00010004993)	ENSSAUG00010004991	pde6a (ENSSAUG00010002712)	SLC26A2 (ENSSAUG00010002592)	HTR4 (ENSSAUG00010002579)	lman2 (ENSSAUG00010007219)	FAT2 (ENSSAUG00010007168) #23	mtnr1al (ENSSAUG00010007156)	SLC36A1 (ENSSAUG00010007141) #24	atox1 (ENSSAUG00010007132)	sparc (ENSSAUG00010007127) #22	g3bp1 (ENSSAUG00010007125) #20	glra1 (ENSSAUG00010005865) #19	ENSSAUG00010005845	slc25a48 (ENSSAUG00010005843)	cplx2 (ENSSAUG00010005838)	thoc3 (ENSSAUG00010005831)	ENSSAUG00010005828	gm2a (ENSSAUG00010005825) #27	PCDH12 (ENSSAUG00010005822)	ENSSAUG00010005820	PCDH1 (ENSSAUG00010005818)	ENSSAUG00010005814	ENSSAUG00010005812	tmed9 (ENSSAUG00010005808)	tmem216 (ENSSAUG00010005806)
Perciformes	ANCESTRAL SPECIES	13	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00730000111972	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354
Stickleback	MODERN SPECIES	3	NCBP1 (ENSGACG00000016772)	SLC49A3 (ENSGACG00000016791)	PCGF3 (ENSGACG00000016794)	CPLX1 (ENSGACG00000016796)	SMU1 (ENSGACG00000016798)	ELP1 (ENSGACG00000016803)	ENSGACG00000016808	ENSGACG00000016810	pde6a (ENSGACG00000016811)	SLC26A2 (ENSGACG00000016814)	HTR4 (ENSGACG00000016819)	lman2 (ENSGACG00000016821)	FAT2 (ENSGACG00000016824) #23	mtnr1al (ENSGACG00000016828)	SLC36A1 (ENSGACG00000016829) #24	sparc (ENSGACG00000016847) #22	g3bp1 (ENSGACG00000016848) #20	glra1 (ENSGACG00000016854) #19	slc25a48 (ENSGACG00000016856)	ENSGACG00000016859	ENSGACG00000016862	ENSGACG00000016868	NFKB1 (ENSGACG00000016876)	DGKQ (ENSGACG00000016877)	mgat4b (ENSGACG00000016886)	canx (ENSGACG00000016892)	MAML1 (ENSGACG00000016896)	LTC4S (ENSGACG00000016900)	ENSGACG00000016901	ENSGACG00000016902	rom1b (ENSGACG00000016903)
Lumpfish	MODERN SPECIES	1	ARHGEF37 (ENSCLMG00005003878)	ENSCLMG00005003883	ENSCLMG00005003884	ENSCLMG00005003887	ENSCLMG00005003888	pde6a (ENSCLMG00005003890)	SLC26A2 (ENSCLMG00005003895)	HTR4 (ENSCLMG00005003897)	lman2 (ENSCLMG00005003902)	ENSCLMG00005003907	FAT2 (ENSCLMG00005003911) #23	ENSCLMG00005004050	mtnr1al (ENSCLMG00005004051)	SLC36A1 (ENSCLMG00005004052) #24	atox1 (ENSCLMG00005004089)	sparc (ENSCLMG00005004091) #22	g3bp1 (ENSCLMG00005004122) #20	glra1 (ENSCLMG00005004137) #19	ENSCLMG00005004160	slc25a48 (ENSCLMG00005004162)	ENSCLMG00005004163	sqstm1 (ENSCLMG00005004165)	ENSCLMG00005004166	selenot2 (ENSCLMG00005004168)	ENSCLMG00005004169	COX18 (ENSCLMG00005004170)	igfbp7 (ENSCLMG00005004171)	polr2b (ENSCLMG00005004173)	TBC1D9B (ENSCLMG00005004189)	ENSCLMG00005006059	rnf130 (ENSCLMG00005006060)
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Channel bull blenny	MODERN SPECIES	1	ARHGEF37 (ENSCGOG00000010711)	ENSCGOG00000010710	pde6a (ENSCGOG00000010593)	SLC26A2 (ENSCGOG00000010540)	ENSCGOG00000010535	ENSCGOG00000010532	ENSCGOG00000010530	ENSCGOG00000010527	ENSCGOG00000010524	ENSCGOG00000010522	lman2 (ENSCGOG00000010320)	FAT2 (ENSCGOG00000010291) #23	mtnr1al (ENSCGOG00000010287)	SLC36A1 (ENSCGOG00000010245) #24	atox1 (ENSCGOG00000010243)	sparc (ENSCGOG00000010219) #22	g3bp1 (ENSCGOG00000009954) #20	glra1 (ENSCGOG00000009867) #19	slc25a48 (ENSCGOG00000009865)	cplx2 (ENSCGOG00000009862)	thoc3 (ENSCGOG00000009855)	ENSCGOG00000009847	gm2a (ENSCGOG00000009845) #27	PCDH12 (ENSCGOG00000009844)	ENSCGOG00000009840	ENSCGOG00000009832	ENSCGOG00000009828	PCDH1 (ENSCGOG00000009822)	ENSCGOG00000009818
Pike perch	MODERN SPECIES	32	CPLX1 (ENSSLUG00000008981)	SMU1 (ENSSLUG00000008987)	CPXM1 (ENSSLUG00000009022)	ELP1 (ENSSLUG00000009626)	ARHGEF37 (ENSSLUG00000010579)	PPARGC1B (ENSSLUG00000010596)	pde6a (ENSSLUG00000010640)	SLC26A2 (ENSSLUG00000010734)	HTR4 (ENSSLUG00000010737)	ENSSLUG00000010741	lman2 (ENSSLUG00000010760)	FAT2 (ENSSLUG00000010833) #23	mtnr1al (ENSSLUG00000010923)	SLC36A1 (ENSSLUG00000010933) #24	atox1 (ENSSLUG00000010960)	sparc (ENSSLUG00000010968) #22	g3bp1 (ENSSLUG00000011015) #20	glra1 (ENSSLUG00000011030) #19	ENSSLUG00000011073	slc25a48 (ENSSLUG00000011075)	cplx2 (ENSSLUG00000011079)	thoc3 (ENSSLUG00000011086)	ENSSLUG00000011094	ENSSLUG00000011100	gm2a (ENSSLUG00000005337) #27	ENSSLUG00000005345	PCDH12 (ENSSLUG00000005352)	ENSSLUG00000005371	PCDH1 (ENSSLUG00000005379)	ENSSLUG00000005388	ENSSLUG00000005396
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000175795	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28
Carangaria	ANCESTRAL SPECIES	15	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b
Turbot	MODERN SPECIES	4	ENSSMAG00000029890	ENSSMAG00000007084	ENSSMAG00000007074 #27	ENSSMAG00000007035	ARHGEF37 (ENSSMAG00000006958)	ENSSMAG00000006930	pde6a (ENSSMAG00000006883)	SLC26A2 (ENSSMAG00000029056)	ENSSMAG00000030425	ENSSMAG00000006358	ENSSMAG00000006434 #23	mtnr1al (ENSSMAG00000025091)	ENSSMAG00000006543 #24	atox1 (ENSSMAG00000006562)	ENSSMAG00000031040	sparc (ENSSMAG00000006598) #22	g3bp1 (ENSSMAG00000006669) #20	glra1 (ENSSMAG00000006718) #19	ENSSMAG00000027427	slc25a48 (ENSSMAG00000006758)	ENSSMAG00000006775	ENSSMAG00000006786	ENSSMAG00000006811	ENSSMAG00000026109	ENSSMAG00000035912	ENSSMAG00000005812	ENSSMAG00000005758	ENSSMAG00000005820	ENSSMAG00000005971	ENSSMAG00000006012	ENSSMAG00000028744
Tongue sole	MODERN SPECIES	6	LTC4S (ENSCSEG00000012592)	ENSCSEG00000012595 #28	emx3 (ENSCSEG00000012600)	b4galt7 (ENSCSEG00000012610)	tmed9 (ENSCSEG00000012631)	ENSCSEG00000012640	tmem216 (ENSCSEG00000012643)	tbpl1 (ENSCSEG00000012646)	ENSCSEG00000012656	ENSCSEG00000012682	ENSCSEG00000012698	neurog1 (ENSCSEG00000012706)	ENSCSEG00000012714	NFKB1 (ENSCSEG00000012728)	DGKQ (ENSCSEG00000012752)	sparc (ENSCSEG00000012770) #22	g3bp1 (ENSCSEG00000012777) #20	glra1 (ENSCSEG00000012786) #19	slc25a48 (ENSCSEG00000012814)	cplx2 (ENSCSEG00000012830)	ENSCSEG00000012841	thoc3 (ENSCSEG00000012846)	ENSCSEG00000012856	PCDH12 (ENSCSEG00000012882)	ENSCSEG00000012886	PCDH1 (ENSCSEG00000012889)	vma21 (ENSCSEG00000012897)	mtnr1c (ENSCSEG00000012906)	neurl1b (ENSCSEG00000012917)	dusp1 (ENSCSEG00000012938)	ergic1 (ENSCSEG00000012949)
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00940000160738
Seriola	ANCESTRAL SPECIES	31	ENSGT00940000155317.a.b	ENSGT00950000183159.a.v.b	ENSGT00940000159958	ENSGT00390000011368	ENSGT00390000012346	ENSGT00940000155372	ENSGT00940000155988.d	ENSGT00940000154372.a.b.b	ENSGT00940000154372.a.a.a	ENSGT00530000063586.b.c.b	ENSGT00390000010628.b	ENSGT00390000005639.a.a	ENSGT00390000000470.n	ENSGT00940000156495	ENSGT00940000156418	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00980000198740	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000155521.a.a	ENSGT00940000160403	ENSGT00390000003288 #27	ENSGT00940000157174.d	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28
Greater amberjack	MODERN SPECIES	113	ENSSDUG00000007963	ENSSDUG00000007997	phox2bb (ENSSDUG00000008009)	tmem33 (ENSSDUG00000008030)	bbs7 (ENSSDUG00000008052)	ccna2 (ENSSDUG00000008091)	anxa5a (ENSSDUG00000008109)	fgfbp2a (ENSSDUG00000008124)	prom1a (ENSSDUG00000008149)	TAPT1 (ENSSDUG00000008283)	ldb2a (ENSSDUG00000008359)	qdpra (ENSSDUG00000008398)	fstl5 (ENSSDUG00000008435)	ENSSDUG00000008521	RAPGEF2 (ENSSDUG00000008556)	sparc (ENSSDUG00000008774) #22	g3bp1 (ENSSDUG00000008796) #20	glra1 (ENSSDUG00000008848) #19	slc25a48 (ENSSDUG00000008876)	cplx2 (ENSSDUG00000008912)	thoc3 (ENSSDUG00000008924)	ENSSDUG00000008946	TMED9 (ENSSDUG00000008984)	tmem216 (ENSSDUG00000008999)	tmed9 (ENSSDUG00000009010)
Yellowtail amberjack	MODERN SPECIES	2735															RAPGEF2 (ENSSLDG00000014751)	sparc (ENSSLDG00000014438) #22	g3bp1 (ENSSLDG00000014124) #20
Barramundi perch	MODERN SPECIES	61	ENSLCAG00010006259	ENSLCAG00010006267	VCPIP1 (ENSLCAG00010006269)	ENSLCAG00010006273	ENSLCAG00010006287	ENSLCAG00010006302	ENSLCAG00010006311	ENSLCAG00010006358	ENSLCAG00010006377	fam49ba (ENSLCAG00010006387)	PHB2 (ENSLCAG00010006417)	ENSLCAG00010006461	mtnr1al (ENSLCAG00010006464)	SLC36A1 (ENSLCAG00010006468) #24	atox1 (ENSLCAG00010006472)	sparc (ENSLCAG00010006486) #22	g3bp1 (ENSLCAG00010006527) #20	glra1 (ENSLCAG00010006550) #19
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000175795	ENSGT00940000153899.a.a	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000009818	SMU1 (ENSMAMG00000009833)	ENSMAMG00000009876	ENSMAMG00000009905	ARHGEF37 (ENSMAMG00000009959)	ENSMAMG00000009976	pde6a (ENSMAMG00000009992)	SLC26A2 (ENSMAMG00000010041)	ENSMAMG00000010057	ENSMAMG00000010079	ENSMAMG00000010102	ENSMAMG00000010137 #23	mtnr1al (ENSMAMG00000010266)	ENSMAMG00000025587 #24	atox1 (ENSMAMG00000026452)	sparc (ENSMAMG00000013092) #22	g3bp1 (ENSMAMG00000013109) #20	glra1 (ENSMAMG00000013123) #19	ENSMAMG00000013141	slc25a48 (ENSMAMG00000025670)	ENSMAMG00000013160	thoc3 (ENSMAMG00000013229)	ENSMAMG00000013268	ENSMAMG00000013307 #27	ENSMAMG00000013316	ENSMAMG00000013336	ENSMAMG00000013358	ENSMAMG00000013373	ENSMAMG00000013380	ENSMAMG00000013395	b4galt7 (ENSMAMG00000013415)
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT01030000234625.C	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a.b.b	ENSGT00940000155007.n.a	ENSGT00940000156141.B	ENSGT00390000013344	ENSGT00950000183088.a.a	ENSGT00950000183137.b.b	ENSGT00940000156471.b.b	ENSGT01100000263544.c.a.a.a	ENSGT00940000155983.a.a	ENSGT00940000158355	ENSGT00940000158507 #23	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00390000003288 #27	ENSGT00940000160403	ENSGT00940000155521.a.a	ENSGT00940000175795	ENSGT00940000156526.a	ENSGT00950000182915.a.a.a	ENSGT00950000183201.b.b.b.a	ENSGT00940000160738	ENSGT00950000183026.A.a.b #28
Climbing perch	MODERN SPECIES	22	ENSATEG00000016267	ENSATEG00000016336	ENSATEG00000016353	ENSATEG00000016390	ENSATEG00000016431	ENSATEG00000016770	ENSATEG00000016920	ENSATEG00000016937	ENSATEG00000016961	ENSATEG00000016976	ENSATEG00000028038	ENSATEG00000017137	mtnr1al (ENSATEG00000017184)	ENSATEG00000017558 #24	atox1 (ENSATEG00000017575)	sparc (ENSATEG00000017589) #22	g3bp1 (ENSATEG00000017646) #20	glra1 (ENSATEG00000017876) #19	slc25a48 (ENSATEG00000017906)	ENSATEG00000026908	thoc3 (ENSATEG00000017937)	ENSATEG00000017955	ENSATEG00000029734 #27	ENSATEG00000018020	ENSATEG00000018043	mgat4b (ENSATEG00000018078)	canx (ENSATEG00000018130)	ENSATEG00000018177	LTC4S (ENSATEG00000018191)	ENSATEG00000029494 #28	ENSATEG00000027104
Siamese fighting fish	MODERN SPECIES	1	SLC26A2 (ENSBSLG00000013143)	pde6a (ENSBSLG00000013481)	ENSBSLG00000015167	ENSBSLG00000015247	pde6a (ENSBSLG00000015328)	SLC26A2 (ENSBSLG00000015748)	HTR4 (ENSBSLG00000016615)	ENSBSLG00000016655	lman2 (ENSBSLG00000016786)	FAT2 (ENSBSLG00000017201) #23	mtnr1al (ENSBSLG00000017576)	ENSBSLG00000017594	SLC36A1 (ENSBSLG00000017616) #24	ENSBSLG00000017773	atox1 (ENSBSLG00000017779)	sparc (ENSBSLG00000017795) #22	g3bp1 (ENSBSLG00000018181) #20	glra1 (ENSBSLG00000018233) #19	ENSBSLG00000018404	slc25a48 (ENSBSLG00000018412)	cplx2 (ENSBSLG00000018425)	thoc3 (ENSBSLG00000018438)	gm2a (ENSBSLG00000018748) #27	ENSBSLG00000018772	PCDH12 (ENSBSLG00000018808)	ENSBSLG00000018840	PCDH1 (ENSBSLG00000018852)	ENSBSLG00000018865	mgat4b (ENSBSLG00000018940)	ENSBSLG00000002337	canx (ENSBSLG00000002477)
Pinecone sodierfish	MODERN SPECIES	1	PCGF3 (ENSMMDG00005011865)	CPLX1 (ENSMMDG00005011868)	ENSMMDG00005011872	SMU1 (ENSMMDG00005011879)	CPXM1 (ENSMMDG00005011930)	ARHGEF37 (ENSMMDG00005012737)	ENSMMDG00005012739	pde6a (ENSMMDG00005012744)	SLC26A2 (ENSMMDG00005012752)	HTR4 (ENSMMDG00005012756)	lman2 (ENSMMDG00005012932)	FAT2 (ENSMMDG00005012940) #23	mtnr1al (ENSMMDG00005012953)	SLC36A1 (ENSMMDG00005012958) #24	atox1 (ENSMMDG00005012967)	sparc (ENSMMDG00005012973) #22	g3bp1 (ENSMMDG00005013234) #20	glra1 (ENSMMDG00005013250) #19	slc25a48 (ENSMMDG00005013280)	cplx2 (ENSMMDG00005013282)	thoc3 (ENSMMDG00005013283)	ENSMMDG00005013284	ccna2 (ENSMMDG00005013287)	anxa5a (ENSMMDG00005013290)	ENSMMDG00005013434	fgfbp2a (ENSMMDG00005013435)	prom1a (ENSMMDG00005013439)	TAPT1 (ENSMMDG00005013440)	ldb2a (ENSMMDG00005013444)	qdpra (ENSMMDG00005013561)	ENSMMDG00005013563
Cod	MODERN SPECIES	1	ENSGMOG00000016206	spon2b (ENSGMOG00000028338)	ENSGMOG00000017156	ENSGMOG00000025445	fgfrl1a (ENSGMOG00000023341)	ENSGMOG00000018735	ENSGMOG00000034466	ENSGMOG00000032320	ENSGMOG00000030450	ENSGMOG00000023439	ENSGMOG00000027232	ENSGMOG00000017306 #23	mtnr1al (ENSGMOG00000017372)	ENSGMOG00000027688 #24	atox1 (ENSGMOG00000023345)	sparc (ENSGMOG00000019341) #22	g3bp1 (ENSGMOG00000019345) #20	glra1 (ENSGMOG00000015249) #19	slc25a48 (ENSGMOG00000019144)	ENSGMOG00000019154	ENSGMOG00000019136	ENSGMOG00000037214	ENSGMOG00000014209	ENSGMOG00000034137	SLC26A2 (ENSGMOG00000013680)	pde6a (ENSGMOG00000013630)	ENSGMOG00000030539	ARHGEF37 (ENSGMOG00000014487)	ENSGMOG00000026293	ENSGMOG00000024289	ENSGMOG00000019046
Protacanthopterygii	ANCESTRAL SPECIES	62	ENSGT00390000002292.b	ENSGT00940000159349.f	ENSGT00940000159591	ENSGT00940000159349.e.a	ENSGT00940000158355	ENSGT00940000159747	ENSGT00940000157712	ENSGT00980000203236	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047.d #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00390000017284.b	ENSGT00940000153322.B.d.a	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	541									ENSGT00950000183026.A.a.b.c #28	ENSGT00390000003288.r #27	ENSGT00940000158507.e #23	ENSGT00940000165176	ENSGT00940000156583.i #24	ENSGT00940000163780.q	ENSGT00940000163780.r.b.b	ENSGT00510000046787.e.b.k #22	ENSGT00390000011365.a.mc #20	ENSGT00940000159047.d #19	ENSGT00940000159354.f	ENSGT00950000182938.b.b.a.c.a	ENSGT00980000198740	ENSGT00940000153899.a.a.k	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f
Salmoninae_a	ANCESTRAL SPECIES	106	ENSGT00390000014889.a.b	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000154361.B.j	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #28	ENSGT00390000003288.r #27	ENSGT00940000158507.e #23	ENSGT00940000165176	ENSGT00940000156583.i #24	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #22	ENSGT00390000011365.a.mc #20	ENSGT00940000159047.d.d #19	ENSGT00940000159354.e.a	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00940000153899.a.a.l	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.g	ENSGT00940000164810.h.a	ENSGT00530000063860.a.g
Salmo	ANCESTRAL SPECIES	83	ENSGT00550000074618.a.a.lb.a.c	ENSGT00390000014889.a.b	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #28	ENSGT00390000003288.r #27	ENSGT00940000158507.e #23	ENSGT00940000165176	ENSGT00940000156583.i #24	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #22	ENSGT00390000011365.a.mc #20	ENSGT00940000159047.d.d #19	ENSGT00940000159354.e.a	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00940000153899.a.a.l	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.g	ENSGT00530000063860.a.g	ENSGT00940000155437.d
River trout	MODERN SPECIES	4	ppp2caa (ENSSTUG00000019616)	si:ch1073-44g3.1 (ENSSTUG00000019646)	ENSSTUG00000019657	C1QTNF2 (ENSSTUG00000019799)	ENSSTUG00000019805	lman2 (ENSSTUG00000019838)	tmed9 (ENSSTUG00000020422)	b4galt7 (ENSSTUG00000020461)	emx3 (ENSSTUG00000020477)	ENSSTUG00000020484 #28	GM2A (ENSSTUG00000020493) #27	FAT2 (ENSSTUG00000020518) #23	ENSSTUG00000020993	mtnr1al (ENSSTUG00000020997)	atox1 (ENSSTUG00000021006)	sparc (ENSSTUG00000021031) #22	g3bp1 (ENSSTUG00000021081) #20	glra1 (ENSSTUG00000021157) #19	slc25a48 (ENSSTUG00000021541)	cplx2 (ENSSTUG00000021551)	thoc3 (ENSSTUG00000021570)	ENSSTUG00000021583	tmem216 (ENSSTUG00000021623)	ENSSTUG00000021653	ENSSTUG00000021721	ENSSTUG00000021738	neurog1 (ENSSTUG00000021756)	ENSSTUG00000021789	ENSSTUG00000022464	tgfbi (ENSSTUG00000022473)	smad5 (ENSSTUG00000022608)
Atlantic salmon	MODERN SPECIES	28	si:ch1073-44g3.1 (ENSSSAG00000097474)	ENSSSAG00000086092	ENSSSAG00000094670	ENSSSAG00000054516	lman2 (ENSSSAG00000054557)	tmed9 (ENSSSAG00000055910)	b4galt7 (ENSSSAG00000101763)	emx3 (ENSSSAG00000056011)	ENSSSAG00000056013 #28	ENSSSAG00000058137 #27	ENSSSAG00000057688 #23	mtnr1al (ENSSSAG00000057613)	ENSSSAG00000110716	ENSSSAG00000056413 #24	atox1 (ENSSSAG00000056380)	sparc (ENSSSAG00000056353) #22	g3bp1 (ENSSSAG00000056267) #20	glra1 (ENSSSAG00000091268) #19	ENSSSAG00000056251	ENSSSAG00000056240	slc25a48 (ENSSSAG00000056016)	cplx2 (ENSSSAG00000093686)	thoc3 (ENSSSAG00000103068)	ENSSSAG00000059184	ENSSSAG00000059207	ENSSSAG00000059228	ENSSSAG00000059250	ENSSSAG00000059242	ENSSSAG00000096288	ENSSSAG00000059339	ENSSSAG00000060766
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT00390000014889.a.b	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000154361.B.j	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #28	ENSGT00390000003288.r #27	ENSGT00940000158507.e #23	ENSGT00940000165176	ENSGT00940000156583.i #24	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #22	ENSGT00390000011365.a.mc #20	ENSGT00940000159354.f.b	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00980000203039	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.h.a	ENSGT00530000063860.a.g	ENSGT00940000155437.e	ENSGT00940000157743.j
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00390000014889.a.b	ENSGT00940000155027.c.a.e	ENSGT00940000159591	ENSGT00940000159349.e.a.a	ENSGT00940000158355.d	ENSGT00940000159747.a	ENSGT00940000157712.e	ENSGT00940000154361.B.j	ENSGT00940000157425.A.d	ENSGT00950000183026.A.a.b.c #28	ENSGT00390000003288.r #27	ENSGT00940000158507.e #23	ENSGT00940000165176	ENSGT00940000156583.i #24	ENSGT00940000163780.q	ENSGT00510000046787.e.b.k #22	ENSGT00390000011365.a.mc #20	ENSGT00940000159354.f.b	ENSGT00950000182938.b.b.a.c.b	ENSGT00940000158129.b	ENSGT00510000048167.b.b.d.b	ENSGT00980000203039	ENSGT01030000235165.d	ENSGT00390000017284.b.g	ENSGT00940000153322.B.d.a.m	ENSGT00940000167363.e	ENSGT00940000158869.a	ENSGT00940000164810.h.a	ENSGT00530000063860.a.g	ENSGT00940000155437.e	ENSGT00940000157743.j
Coho salmon	MODERN SPECIES	6	ENSOKIG00005024056	si:ch1073-44g3.1 (ENSOKIG00005024034)	ENSOKIG00005023014	C1QTNF2 (ENSOKIG00005022952)	ENSOKIG00005022940	lman2 (ENSOKIG00005022408)	tmed9 (ENSOKIG00005022363)	b4galt7 (ENSOKIG00005022348)	ENSOKIG00005022328	emx3 (ENSOKIG00005022326)	ENSOKIG00005022305 #28	FAT2 (ENSOKIG00005021921) #23	mtnr1al (ENSOKIG00005021819)	ENSOKIG00005021729 #24	atox1 (ENSOKIG00005021709)	sparc (ENSOKIG00005021660) #22	g3bp1 (ENSOKIG00005021535) #20	glra1 (ENSOKIG00005020449) #19	slc25a48 (ENSOKIG00005020372)	ENSOKIG00005020364	cplx2 (ENSOKIG00005042780)	thoc3 (ENSOKIG00005042690)	ENSOKIG00005042614	ENSOKIG00005042588	ENSOKIG00005042552	ENSOKIG00005042531	ENSOKIG00005042505	ENSOKIG00005042496	ENSOKIG00005041681	ENSOKIG00005041625	tgfbi (ENSOKIG00005041318)
Chinook salmon	MODERN SPECIES	32	cplx2 (ENSOTSG00005001353)	emx3 (ENSOTSG00005001356)	ENSOTSG00005001358	b4galt7 (ENSOTSG00005001359)	tmed9 (ENSOTSG00005001362)	lman2 (ENSOTSG00005001385)	C1QTNF2 (ENSOTSG00005002328)	ENSOTSG00005002336	si:ch1073-44g3.1 (ENSOTSG00005002343)	ENSOTSG00005002354	ENSOTSG00005002499	sfxn1 (ENSOTSG00005002500)	FAT2 (ENSOTSG00005002506) #23	mtnr1al (ENSOTSG00005002521)	atox1 (ENSOTSG00005002534)	sparc (ENSOTSG00005002539) #22	g3bp1 (ENSOTSG00005002560) #20	slc25a48 (ENSOTSG00005002572)	slc6a3 (ENSOTSG00005002586)	fut11 (ENSOTSG00005002603)	RAB9B (ENSOTSG00005002611)	plp1a (ENSOTSG00005002628)	ENSOTSG00005002630	ENSOTSG00005002631	ENSOTSG00005002633	asb12b (ENSOTSG00005002637)	STAG2 (ENSOTSG00005002639)	xiap (ENSOTSG00005002643)	ENSOTSG00005002645	nek12 (ENSOTSG00005002648)	DRD1 (ENSOTSG00005002652)
Huchen	MODERN SPECIES	2837														ENSHHUG00000017503 #24	atox1 (ENSHHUG00000017493)	sparc (ENSHHUG00000017443) #22	g3bp1 (ENSHHUG00000017427) #20
Salmoninae	ANCESTRAL SPECIES	293	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00980000203236	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #28	ENSGT00390000003288.q #27	ENSGT00940000158507.f #23	ENSGT00940000156583.j #24	ENSGT00940000163780.r.b.a	ENSGT00510000046787.e.b.l #22	ENSGT00390000011365.a.nc #20
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #28	ENSGT00390000003288.q #27	ENSGT00940000158507.f #23	ENSGT00940000156583.j #24	ENSGT00940000163780.r.b.a	ENSGT00940000163780.r.a	ENSGT00510000046787.e.b.l #22	ENSGT00390000011365.a.nc #20	ENSGT00940000159047.d.c #19	ENSGT00940000159354.f	ENSGT00950000182938.b.b.a.c.a	ENSGT00940000158129.a	ENSGT00510000048167.b.b.c	ENSGT00940000153899.a.a.k	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000157743.i
Oncorhynchus	ANCESTRAL SPECIES	45	ENSGT01030000234641.b.a.b.a.b.q.b	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #28	ENSGT00390000003288.q #27	ENSGT00940000158507.f #23	ENSGT00940000156583.j #24	ENSGT00940000163780.r.a	ENSGT00510000046787.e.b.l #22	ENSGT00390000011365.a.nc #20	ENSGT00940000159047.d.c #19	ENSGT00940000159354.f.a	ENSGT00950000182938.b.b.a.c.a	ENSGT00940000158129.a	ENSGT00510000048167.b.b.d.a	ENSGT00940000153899.a.a.l	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000155437.f
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000025348	ENSOMYG00000030168	ENSOMYG00000075545	ENSOMYG00000068282	lman2 (ENSOMYG00000025433)	tmed9 (ENSOMYG00000025469)	b4galt7 (ENSOMYG00000025499)	emx3 (ENSOMYG00000031752)	ENSOMYG00000069999 #28	ENSOMYG00000053482	gm2a (ENSOMYG00000037055) #27	ENSOMYG00000036397 #23	ENSOMYG00000036151 #24	ENSOMYG00000061934	atox1 (ENSOMYG00000036135)	sparc (ENSOMYG00000036119) #22	g3bp1 (ENSOMYG00000036089) #20	glra1 (ENSOMYG00000036027) #19	slc25a48 (ENSOMYG00000035875)	cplx2 (ENSOMYG00000035885)	ENSOMYG00000035888	thoc3 (ENSOMYG00000035896)	ENSOMYG00000035911	ENSOMYG00000035919	ENSOMYG00000035939	ENSOMYG00000035953	ENSOMYG00000035966	ENSOMYG00000037557	ENSOMYG00000035704	ENSOMYG00000053281	ENSOMYG00000063892
Oncorhynchus_a	ANCESTRAL SPECIES	46	ENSGT01030000234641.b.a.b.a.b.q.b	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #28	ENSGT00390000003288.q #27	ENSGT00940000158507.f #23	ENSGT00940000156583.j #24	ENSGT00940000163780.r.a	ENSGT00510000046787.e.b.l #22	ENSGT00390000011365.a.nc #20	ENSGT00940000159047.d.c #19	ENSGT00940000159354.f.a	ENSGT00950000182938.b.b.a.c.a	ENSGT00510000048167.b.b.d.a	ENSGT00940000153899.a.a.l	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000155437.f	ENSGT00940000157743.i
Coho salmon	MODERN SPECIES	10	sfxn1 (ENSOKIG00005012833)	ppp2caa (ENSOKIG00005012858)	si:ch1073-44g3.1 (ENSOKIG00005012887)	ENSOKIG00005012898	slu7 (ENSOKIG00005012947)	ENSOKIG00005013382	lman2 (ENSOKIG00005013403)	tmed9 (ENSOKIG00005013533)	b4galt7 (ENSOKIG00005013560)	emx3 (ENSOKIG00005013591)	ENSOKIG00005013602 #28	gm2a (ENSOKIG00005013616) #27	FAT2 (ENSOKIG00005013687) #23	SLC36A1 (ENSOKIG00005014354) #24	atox1 (ENSOKIG00005014456)	sparc (ENSOKIG00005014473) #22	g3bp1 (ENSOKIG00005014488) #20	glra1 (ENSOKIG00005014573) #19	slc25a48 (ENSOKIG00005015603)	cplx2 (ENSOKIG00005015629)	thoc3 (ENSOKIG00005015661)	ENSOKIG00005015694	ENSOKIG00005015708	ENSOKIG00005015726	ENSOKIG00005015746	ENSOKIG00005015765	neurog1 (ENSOKIG00005015798)	ARAP3 (ENSOKIG00005015889)	ENSOKIG00005017394	ENSOKIG00005017399	tgfbi (ENSOKIG00005017437)
Chinook salmon	MODERN SPECIES	13	eef1g (ENSOTSG00005015302)	ENSOTSG00005015300	klhl4 (ENSOTSG00005015297)	ENSOTSG00005015294	ENSOTSG00005015295	ENSOTSG00005015292	TSC22D3 (ENSOTSG00005015290)	ENSOTSG00005015289	lman2 (ENSOTSG00005014403)	b4galt7 (ENSOTSG00005014392)	emx3 (ENSOTSG00005014391)	ENSOTSG00005014390 #28	GM2A (ENSOTSG00005014386) #27	SLC36A1 (ENSOTSG00005014384) #24	atox1 (ENSOTSG00005014382)	sparc (ENSOTSG00005014368) #22	g3bp1 (ENSOTSG00005014347) #20	glra1 (ENSOTSG00005014344) #19	neurog1 (ENSOTSG00005014342)	ENSOTSG00005014340	ENSOTSG00005014338	ENSOTSG00005014336	tmem216 (ENSOTSG00005014335)	ENSOTSG00005014334	cplx2 (ENSOTSG00005014333)	slc25a48 (ENSOTSG00005014332)	ENSOTSG00005014331	tiparp (ENSOTSG00005014330)	ENSOTSG00005014329	ENSOTSG00005014328	slu7 (ENSOTSG00005014326)
Salmo	ANCESTRAL SPECIES	24	ENSGT00550000074618.a.a.lb.a.d	ENSGT00390000014889.a.a	ENSGT00940000155027.c.a.f	ENSGT00390000002292.b	ENSGT00940000159349.e.a.b	ENSGT00940000158355.c	ENSGT00940000159747.b	ENSGT00940000157712.f	ENSGT01100000264172.a	ENSGT00940000157425.A.c	ENSGT00950000183026.A.a.b.d #28	ENSGT00390000003288.q #27	ENSGT00940000158507.f #23	ENSGT00940000156583.j #24	ENSGT00940000163780.r.b.a	ENSGT00510000046787.e.b.l #22	ENSGT00390000011365.a.nc #20	ENSGT00940000159047.d.c #19	ENSGT00940000159354.e.b	ENSGT00950000182938.b.b.a.c.a	ENSGT00940000158129.a	ENSGT00510000048167.b.b.c	ENSGT00940000153899.a.a.k	ENSGT01030000235165.c	ENSGT00390000017284.b.h	ENSGT00940000153322.B.d.a.n	ENSGT00940000167363.f	ENSGT00940000158869.b	ENSGT00940000164810.h.b	ENSGT00530000063860.a.h	ENSGT00940000155437.c
River trout	MODERN SPECIES	22	ppp2caa (ENSSTUG00000003079)	si:ch1073-44g3.1 (ENSSTUG00000003074)	ENSSTUG00000002382	slu7 (ENSSTUG00000001922)	CCNJL (ENSSTUG00000001877)	lman2 (ENSSTUG00000001754)	tmed9 (ENSSTUG00000001712)	b4galt7 (ENSSTUG00000001689)	ENSSTUG00000001680	emx3 (ENSSTUG00000001674)	ENSSTUG00000001660 #28	GM2A (ENSSTUG00000001642) #27	FAT2 (ENSSTUG00000001389) #23	SLC36A1 (ENSSTUG00000001267) #24	atox1 (ENSSTUG00000001241)	sparc (ENSSTUG00000001233) #22	g3bp1 (ENSSTUG00000001178) #20	glra1 (ENSSTUG00000000944) #19	slc25a48 (ENSSTUG00000000920)	cplx2 (ENSSTUG00000000916)	thoc3 (ENSSTUG00000000911)	ENSSTUG00000000903	tmem216 (ENSSTUG00000000899)	ENSSTUG00000000887	ENSSTUG00000000881	ENSSTUG00000000869	neurog1 (ENSSTUG00000000862)	ENSSTUG00000000466	ENSSTUG00000000391	tgfbi (ENSSTUG00000000369)	smad5 (ENSSTUG00000000343)
Atlantic salmon	MODERN SPECIES	24	pp2aa (ENSSSAG00000042241)	si:ch1073-44g3.1 (ENSSSAG00000042224)	ENSSSAG00000119037	ENSSSAG00000040045	ENSSSAG00000085688	lman2 (ENSSSAG00000038386)	tmed9 (ENSSSAG00000088667)	b4galt7 (ENSSSAG00000037414)	ENSSSAG00000113604	emx3 (ENSSSAG00000065687)	ENSSSAG00000065684 #28	GM2A (ENSSSAG00000065677) #27	ENSSSAG00000058979 #23	ENSSSAG00000065551 #24	atox1 (ENSSSAG00000065598)	SPRC (ENSSSAG00000065629) #22	g3bp1 (ENSSSAG00000065650) #20	glra1 (ENSSSAG00000056038) #19	slc25a48 (ENSSSAG00000057879)	cplx2 (ENSSSAG00000116623)	thoc3 (ENSSSAG00000059154)	ENSSSAG00000057032	ENSSSAG00000057856	ENSSSAG00000057017	ENSSSAG00000056994	ENSSSAG00000120114	ENSSSAG00000056934	ENSSSAG00000056927	tgfbi (ENSSSAG00000056908)	smad5 (ENSSSAG00000007804)	syvn1 (ENSSSAG00000056450)
Huchen	MODERN SPECIES	2827													ENSHHUG00000013481	SLC36A1 (ENSHHUG00000013497) #24	atox1 (ENSHHUG00000013507)	sparc (ENSHHUG00000013540) #22	g3bp1 (ENSHHUG00000013564) #20
Northern pike	MODERN SPECIES	3	ENSELUG00000025901	C1QTNF2 (ENSELUG00000022594)	CCNJL (ENSELUG00000022574)	lman2 (ENSELUG00000022557)	tmed9 (ENSELUG00000022505)	b4galt7 (ENSELUG00000022441)	ENSELUG00000022401	emx3 (ENSELUG00000022399)	ENSELUG00000022391 #28	GM2A (ENSELUG00000022382) #27	ENSELUG00000022351 #27	FAT2 (ENSELUG00000022305) #23	mtnr1al (ENSELUG00000022299)	SLC36A1 (ENSELUG00000022288) #24	atox1 (ENSELUG00000022270)	sparc (ENSELUG00000022226) #22	g3bp1 (ENSELUG00000022200) #20	glra1 (ENSELUG00000022153) #19	slc25a48 (ENSELUG00000022095)	cplx2 (ENSELUG00000022073)	thoc3 (ENSELUG00000022058)	ENSELUG00000022031	tmem216 (ENSELUG00000026963)	ENSELUG00000022000	aldh9a1a.1 (ENSELUG00000021907)	paip2 (ENSELUG00000021874)	ENSELUG00000021848	ENSELUG00000025634	ENSELUG00000029446	neurog1 (ENSELUG00000021772)	ARAP3 (ENSELUG00000021754)
Osteoglossiformes	ANCESTRAL SPECIES	52										ENSGT00950000183026.A.a.b #28	ENSGT00390000003288 #27	ENSGT00940000158507 #23	ENSGT00940000165176	ENSGT00940000156583 #24	ENSGT00940000163780	ENSGT00510000046787.e.b #22	ENSGT00390000011365.a #20	ENSGT00940000159047 #19	ENSGT00940000159354	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00510000048167.b.b	ENSGT00940000153899.a.a	ENSGT00940000153322.B.d.a.u	ENSGT00940000153322.B.d.a.v	ENSGT00390000017284.b	ENSGT00940000162170	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437
Asian bonytongue	MODERN SPECIES	4	KLHL3 (ENSSFOG00015002683)	HNRNPA0 (ENSSFOG00015025597)	HNRNPA0 (ENSSFOG00015029213)	spdl1 (ENSSFOG00015002583)	ENSSFOG00015027544	ENSSFOG00015002569	csnk1a1 (ENSSFOG00015002502)	FBXO38 (ENSSFOG00015002400)	fgfrl1b (ENSSFOG00015002361)	hspa9 (ENSSFOG00015002266)	gm2a (ENSSFOG00015002248) #27	FAT2 (ENSSFOG00015002166) #23	mtnr1al (ENSSFOG00015002133)	SLC36A1 (ENSSFOG00015030401) #24	atox1 (ENSSFOG00015032700)	sparc (ENSSFOG00015002054) #22	g3bp1 (ENSSFOG00015001993) #20	glra1 (ENSSFOG00015033192) #19	slc25a48 (ENSSFOG00015001917)	cplx2 (ENSSFOG00015001898)	thoc3 (ENSSFOG00015001867)	ENSSFOG00015025339	tmem216 (ENSSFOG00015001846)	ENSSFOG00015001824	ENSSFOG00015027205	ENSSFOG00015026121	NEUROG1 (ENSSFOG00015001781)	ARAP3 (ENSSFOG00015001516)	ENSSFOG00015031999	tgfbi (ENSSFOG00015001411)	smad5 (ENSSFOG00015001384)
P. kingsleyae	MODERN SPECIES	56	eno3 (ENSPKIG00000022150)	ENSPKIG00000022179	zgc:85858 (ENSPKIG00000022187)	srrt (ENSPKIG00000022212)	ENSPKIG00000022278	KCTD11 (ENSPKIG00000022337)	ENSPKIG00000022351	ENSPKIG00000022369 #28	gm2a (ENSPKIG00000022390) #27	FAT2 (ENSPKIG00000022412) #23	mtnr1al (ENSPKIG00000022446)	SLC36A1 (ENSPKIG00000022467) #24	ENSPKIG00000022500	ENSPKIG00000022511	atox1 (ENSPKIG00000022528)	sparc (ENSPKIG00000022543) #22	g3bp1 (ENSPKIG00000022556) #20	glra1 (ENSPKIG00000022617) #19	ENSPKIG00000022671	slc25a48 (ENSPKIG00000000162)	cplx2 (ENSPKIG00000000187)	thoc3 (ENSPKIG00000000208)	ENSPKIG00000000242	tmem216 (ENSPKIG00000000272)	ENSPKIG00000000293	ENSPKIG00000000333	ENSPKIG00000000367	NEUROG1 (ENSPKIG00000000377)	ARAP3 (ENSPKIG00000000421)	ENSPKIG00000000534	tgfbi (ENSPKIG00000000568)
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	672	ENSLOCG00000018311	ENSLOCG00000018310	dctn4 (ENSLOCG00000011815) #35	gpx3 (ENSLOCG00000011804)	tnip1 (ENSLOCG00000011786) #30	anxa6 (ENSLOCG00000011765) #29	zgc:175280 (ENSLOCG00000011752)	ENSLOCG00000011745	CCDC69 (ENSLOCG00000011732) #28	ENSLOCG00000011724 #27	gm2a (ENSLOCG00000011710) #27	FAT2 (ENSLOCG00000011694) #23	mtnr1al (ENSLOCG00000011690)	SLC36A1 (ENSLOCG00000011680) #24	atox1 (ENSLOCG00000011673)	sparc (ENSLOCG00000011666) #22	g3bp1 (ENSLOCG00000011657) #20	glra1 (ENSLOCG00000011646) #19	slc25a48 (ENSLOCG00000011632)	cplx2 (ENSLOCG00000011618)	thoc3 (ENSLOCG00000011610)	ENSLOCG00000011605	ENSLOCG00000011597	ENSLOCG00000011587	ENSLOCG00000011570	ENSLOCG00000011563	NEUROG1 (ENSLOCG00000011560)	ENSLOCG00000011550	ARAP3 (ENSLOCG00000011534)	ENSLOCG00000011527	tgfbi (ENSLOCG00000011520)
Spotted gar	MODERN SPECIES	670	fbxo8 (ENSLOCG00000013587)	hand2 (ENSLOCG00000013581)	hmgb2a (ENSLOCG00000013578)	galnt7 (ENSLOCG00000013565)	galntl6 (ENSLOCG00000013556)	FAM193A (ENSLOCG00000013548)	ENSLOCG00000013545 ##30	ENSLOCG00000013541	ENSLOCG00000013538	ENSLOCG00000013532	sparcl1 (ENSLOCG00000013522) ##22	ENSLOCG00000013517	ENSLOCG00000013511	ENSLOCG00000013509	ENSLOCG00000013504	ENSLOCG00000013500 #22	uso1 (ENSLOCG00000013485)	g3bp2a (ENSLOCG00000013470) ##20	CDKL2 (ENSLOCG00000013464)	ENSLOCG00000013461	pkd2 (ENSLOCG00000013447)	abcg2a (ENSLOCG00000013438)	ppm1kb (ENSLOCG00000013435)	ENSLOCG00000013433	mtap (ENSLOCG00000013426)	RIGI (ENSLOCG00000013422)	toporsa (ENSLOCG00000017928)	ndufb6 (ENSLOCG00000013412)	TMEM215 (ENSLOCG00000017926)	ENSLOCG00000013396	ptgr1.1 (ENSLOCG00000013391)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	2														SLC36A1 (ENSECRG00000011396) #24	atox1 (ENSECRG00000011415)	sparc (ENSECRG00000011430) #22	g3bp1 (ENSECRG00000011454) #20	glra1 (ENSECRG00000011489) #19	slc25a48 (ENSECRG00000011527)	ENSECRG00000011543	thoc3 (ENSECRG00000011561)	ENSECRG00000011577	ENSECRG00000011603	ENSECRG00000011646	ENSECRG00000011671	ENSECRG00000011704	ENSECRG00000011739	ENSECRG00000011764	NEUROG1 (ENSECRG00000011773)	ENSECRG00000011786	ENSECRG00000011807
Reedfish	MODERN SPECIES	13	ENSECRG00000003284	ENSECRG00000003261	ENSECRG00000003248	ENSECRG00000003228	ENSECRG00000003209	ENSECRG00000003197	ENSECRG00000003180	ENSECRG00000003160	ENSECRG00000003150	ENSECRG00000003135	ENSECRG00000003109	ENSECRG00000003090	ENSECRG00000003083	ENSECRG00000003067	ENSECRG00000003053	ENSECRG00000003039 #22	uso1 (ENSECRG00000002967)	g3bp2a (ENSECRG00000002923) ##20	ENSECRG00000002906	CDKL2 (ENSECRG00000002818)	ppm1kb (ENSECRG00000002799)	pkd2 (ENSECRG00000002785)	ENSECRG00000002778	ENSECRG00000002755	ENSECRG00000002745	herc3 (ENSECRG00000002597)	FAM13A (ENSECRG00000002444)	ENSECRG00000002399	ENSECRG00000002370	ENSECRG00000002353	elmod2 (ENSECRG00000002342)
Elephant shark	MODERN SPECIES	1577	ENSCMIG00000017824	RAD50 (ENSCMIG00000017859)	kif3a (ENSCMIG00000017930)	pou4f3 (ENSCMIG00000018027)	RBM27 (ENSCMIG00000000206)	ndfip1l (ENSCMIG00000000310)	fgf1 (ENSCMIG00000000315)	ENSCMIG00000000373	ENSCMIG00000000380	ENSCMIG00000000388 #28	GM2A (ENSCMIG00000000397) #27	SLC36A1 (ENSCMIG00000000413) #24	ENSCMIG00000000460	FAT2 (ENSCMIG00000000471) #23	ENSCMIG00000000490	sparc (ENSCMIG00000000506) #22	g3bp1 (ENSCMIG00000000548) #20	glra1 (ENSCMIG00000000617) #19	GRXCR2 (ENSCMIG00000000746)	ENSCMIG00000000757	ENSCMIG00000000760	LARS1 (ENSCMIG00000000911)	ENSCMIG00000001460	ENSCMIG00000001471	ENSCMIG00000001476	ENSCMIG00000001503	TENM2 (ENSCMIG00000001579)	WWC1 (ENSCMIG00000001688)	ENSCMIG00000001935
Cyclostomata	ANCESTRAL SPECIES	430																ENSGT00510000046787.e.b #22	ENSGT00390000017018.b
Hagfish	MODERN SPECIES	1502	ENSEBUG00000013131	CUTC (ENSEBUG00000001690)	ENSEBUG00000015379	ENSEBUG00000001417	ENSEBUG00000015169	ENSEBUG00000006597	ENSEBUG00000002510	ENSEBUG00000017027	ENSEBUG00000001939	tube1 (ENSEBUG00000012346)	ENSEBUG00000013567	gale (ENSEBUG00000016771)	lypla1 (ENSEBUG00000004598)	ENSEBUG00000015914	ENSEBUG00000006575	sparc (ENSEBUG00000001124) #22	uso1 (ENSEBUG00000005401)	ppp2cb (ENSEBUG00000014761)	dnajb12b (ENSEBUG00000011932)	ENSEBUG00000012407	ENSEBUG00000000303	ENSEBUG00000013850	ENSEBUG00000008570	ENSEBUG00000008413	h2az2a (ENSEBUG00000013339)	ENSEBUG00000002686	ENSEBUG00000003767	ENSEBUG00000001887	ENSEBUG00000007221
Vertebrata	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a ##22
Actinopterygii	ANCESTRAL SPECIES	21	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00980000202608	ENSGT00510000046787.e.a ##22
Neopterygii	ANCESTRAL SPECIES	2	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00980000202608	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00980000202596	ENSGT00390000017018.b	ENSGT00390000011365.b ##20	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000163989.a.b	ENSGT00940000163989.a.a	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589
Osteoglossocephalai	ANCESTRAL SPECIES	14	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00510000046787.e.a ##22	ENSGT01000000220882	ENSGT00940000156074.a.b	ENSGT00940000153745.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000154586	ENSGT00980000199830	ENSGT00640000091617	ENSGT00940000156223
Clupeocephala	ANCESTRAL SPECIES	26	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00510000046787.e.a ##22	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000157511	ENSGT00940000159443
Otomorpha	ANCESTRAL SPECIES	57	ENSGT00940000158602	ENSGT00390000006915.d.i	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466.cc	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00510000046787.e.a ##22	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.f	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000157511	ENSGT00940000159443
Otophysi	ANCESTRAL SPECIES	79	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00740000117197	ENSGT00510000046787.e.a ##22	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466.cc	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d.j.a	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.i	ENSGT00940000158602	ENSGT00940000165059.A	ENSGT00390000009223
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00930000150973.B.f	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00740000117197	ENSGT00510000046787.e.a ##22	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466.cc	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d.j.a	ENSGT00940000158602	ENSGT00940000165059.A	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a
Channel catfish	MODERN SPECIES	22	znf827 (ENSIPUG00000004564)	ENSIPUG00000004547	ENSIPUG00000004523	lsm6 (ENSIPUG00000004508)	pou4f2 (ENSIPUG00000004499)	ednra (ENSIPUG00000004480)	tmem184c (ENSIPUG00000004456)	prmt9 (ENSIPUG00000004445)	arhgap10 (ENSIPUG00000004373)	ENSIPUG00000004355	nr3c2 (ENSIPUG00000004309)	DCLK2 (ENSIPUG00000003977)	FAM193A (ENSIPUG00000003934)	Tnip2 (ENSIPUG00000003895) ##30	scpp1 (ENSIPUG00000003891)	sparcl1 (ENSIPUG00000003381) ##22	ENSIPUG00000003343	ENSIPUG00000003337	ENSIPUG00000003334	ENSIPUG00000003266	ENSIPUG00000003248	galntl6 (ENSIPUG00000003196)	galnt7 (ENSIPUG00000003165)	hmgb2a (ENSIPUG00000003150)	SCRG1 (ENSIPUG00000003136)	hand2 (ENSIPUG00000003128)	fbxo8 (ENSIPUG00000003106)	cep44 (ENSIPUG00000003087)	HPGD (ENSIPUG00000003061)	glra3 (ENSIPUG00000002794)	gpm6a (ENSIPUG00000002750)
Characiphysae_b	ANCESTRAL SPECIES	76	ENSGT00930000150973.B.f	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00740000117197	ENSGT00510000046787.e.a ##22	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466.cc	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00390000006915.d.j.a	ENSGT00940000158602	ENSGT00940000165059.A	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.a.a
Characoidei	ANCESTRAL SPECIES	83	ENSGT00930000150973.B.f	ENSGT00390000015089.db	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333	ENSGT00940000154895.b	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00740000117197	ENSGT00510000046787.e.a ##22	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466.cc	ENSGT00390000009191	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368
Red-bellied piranha	MODERN SPECIES	75	smad1 (ENSPNAG00000018876)	mmaa (ENSPNAG00000018835)	zgc:152968 (ENSPNAG00000018796)	lsm6 (ENSPNAG00000018779)	ENSPNAG00000018757	pou4f2 (ENSPNAG00000018723)	ednraa (ENSPNAG00000018703)	tmem184c (ENSPNAG00000018682)	prmt9 (ENSPNAG00000018653)	arhgap10 (ENSPNAG00000018633)	nr3c2 (ENSPNAG00000018585)	dclk2a (ENSPNAG00000018538)	FAM193A (ENSPNAG00000018360)	ENSPNAG00000018343 ##30	scpp1 (ENSPNAG00000018327)	sparcl1 (ENSPNAG00000018312) ##22	galntl6 (ENSPNAG00000018292)	galnt7 (ENSPNAG00000003518)	hmgb2a (ENSPNAG00000018206)	SCRG1 (ENSPNAG00000018171)	hand2 (ENSPNAG00000018155)	fbxo8 (ENSPNAG00000018147)	cep44 (ENSPNAG00000018114)	hpgd (ENSPNAG00000018096)	glra3 (ENSPNAG00000018082)	ENSPNAG00000018027	gpm6ab (ENSPNAG00000018013)
Mexicana tetra	MODERN SPECIES	17	ENSAMXG00000036070	ABCE1 (ENSAMXG00000041181)	smad1 (ENSAMXG00000016040)	mmaa (ENSAMXG00000043168)	zgc:152968 (ENSAMXG00000019691)	ZNF827 (ENSAMXG00000019655)	lsm6 (ENSAMXG00000038738)	pou4f2 (ENSAMXG00000032001)	prmt9 (ENSAMXG00000019547)	arhgap10 (ENSAMXG00000040905)	nr3c2 (ENSAMXG00000025608)	dclk2a (ENSAMXG00000031323)	FAM193A (ENSAMXG00000019508)	ENSAMXG00000017148 ##30	scpp1 (ENSAMXG00000035298)	sparcl1 (ENSAMXG00000017100) ##22	ENSAMXG00000030849	ENSAMXG00000034308	ENSAMXG00000029902	galntl6 (ENSAMXG00000017087)	galnt7 (ENSAMXG00000017060)	hmgb2a (ENSAMXG00000039458)	SCRG1 (ENSAMXG00000035267)	hand2 (ENSAMXG00000039141)	fbxo8 (ENSAMXG00000010799)	cep44 (ENSAMXG00000044081)	hpgd (ENSAMXG00000036072)	glra3 (ENSAMXG00000033487)
Electric eel	MODERN SPECIES	495									mtap (ENSEEEG00000017597)	ENSEEEG00000017598	ndufb6 (ENSEEEG00000017600)	galntl6 (ENSEEEG00000017601)	ENSEEEG00000017602	ENSEEEG00000017605	ENSEEEG00000017610 ##30	sparcl1 (ENSEEEG00000017614) ##22	galntl6 (ENSEEEG00000017737)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000167497	ENSGT00940000156063.k	ENSGT00940000154978	ENSGT00940000160339	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333	ENSGT00940000154895.b.d	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00740000117197	ENSGT00510000046787.e.a ##22	ENSGT00940000155038	ENSGT00940000158105	ENSGT00940000154466.cc	ENSGT00940000160772	ENSGT00940000158356	ENSGT00390000009873	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.i	ENSGT00940000158602	ENSGT00940000165059.A	ENSGT00390000009223	ENSGT00940000156167.b	ENSGT01030000234566.e.b.a.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	348	ENSGT00940000154391.a.a.a	ENSGT00390000009908.e	ENSGT00940000156063.k.e.b	ENSGT00940000156063.k.e.a	ENSGT00940000154978.eb	ENSGT00940000160339.b	ENSGT01100000263512.a.a.b.b.a	ENSGT00940000155201.c.a	ENSGT00940000158472.d	ENSGT00940000159559.d	ENSGT00940000159333.n	ENSGT00940000154895.b.d.b	ENSGT00390000000973.a.b.b	ENSGT00510000046908.a.b.d ##30	ENSGT00740000117197.b	ENSGT00510000046787.e.a.a ##22	ENSGT00940000155038.pc	ENSGT00940000158105.k	ENSGT00940000154466.cc.b	ENSGT00940000160772.g	ENSGT00940000158356.k	ENSGT00390000009873.k	ENSGT00940000154593.a.b.i	ENSGT00940000158368.d	ENSGT00390000006915.d.i.b	ENSGT00940000158602.j	ENSGT00940000165059.A.b	ENSGT00390000009223.sb	ENSGT00940000156167.b.b
Goldfish	MODERN SPECIES		creb1a (ENSCARG00000000059)	MXRA5 (ENSCARG00000000060)	PRKX (ENSCARG00000000061)	ENSCARG00000000062	ENSCARG00000000063	ENSCARG00000000064	pou4f2 (ENSCARG00000000065)	ednraa (ENSCARG00000000066)	tmem184c (ENSCARG00000000067)	arhgap10 (ENSCARG00000000068)	nr3c2 (ENSCARG00000000069)	dclk2a (ENSCARG00000000070)	FAM193A (ENSCARG00000000071)	ENSCARG00000000072 ##30	scpp1 (ENSCARG00000000073)	sparcl1 (ENSCARG00000000074) ##22	galntl6 (ENSCARG00000000075)	galnt7 (ENSCARG00000000076)	hmgb2a (ENSCARG00000000077)	hand2 (ENSCARG00000000078)	tenm3 (ENSCARG00000000079)	ENSCARG00000000080	ENSCARG00000000081	ENSCARG00000000083	vegfc (ENSCARG00000000084)	spcs3 (ENSCARG00000000085)	asb5b (ENSCARG00000000086)	ENSCARG00000000088	gpm6ab (ENSCARG00000000089)	glra3 (ENSCARG00000000090)	hpgd (ENSCARG00000000091)
Cyprininae_a	ANCESTRAL SPECIES	217	ENSGT00940000154391.a.a.a	ENSGT00390000009908.e	ENSGT00940000156063.k.e.b	ENSGT00940000156063.k.e.a	ENSGT00940000154978.eb	ENSGT00940000160339.b	ENSGT01100000263512.a.a.b.b.a	ENSGT00940000155201.c.a	ENSGT00940000158472.d	ENSGT00940000159559.d	ENSGT00940000159333.n	ENSGT00940000154895.b.d.b	ENSGT00390000000973.a.b.b	ENSGT00510000046908.a.b.d ##30	ENSGT00740000117197.b	ENSGT00510000046787.e.a.a ##22	ENSGT00940000155038.pc	ENSGT00940000158105.k	ENSGT00940000154466.cc.b	ENSGT00940000160772.g	ENSGT00940000158356.k	ENSGT00390000009873.k	ENSGT00940000154593.a.b.i	ENSGT00940000158368.d	ENSGT00390000006915.d.i.b	ENSGT00940000158602.j	ENSGT00940000165059.A.b	ENSGT00390000009223.sb	ENSGT00940000156167.b.b
Golden-line barbel	MODERN SPECIES	254	ENSSGRG00000008755	ZNF827 (ENSSGRG00000008753)	lsm6 (ENSSGRG00000008752)	pou4f2 (ENSSGRG00000008751)	ednraa (ENSSGRG00000008738)	tmem184c (ENSSGRG00000008736)	prmt9 (ENSSGRG00000008533)	prmt9 (ENSSGRG00000008263)	arhgap10 (ENSSGRG00000008260)	nr3c2 (ENSSGRG00000008258)	dclk2a (ENSSGRG00000006445)	FAM193A (ENSSGRG00000006041)	ENSSGRG00000006022	ENSSGRG00000006020 ##30	scpp1 (ENSSGRG00000006018)	sparcl1 (ENSSGRG00000006016) ##22	ENSSGRG00000006014	galntl6 (ENSSGRG00000005787)
Common carp reference	MODERN SPECIES	22	hhip (ENSCCRG00000063257)	smad1 (ENSCCRG00000023915)	ENSCCRG00000063408	ENSCCRG00000026423	ZNF827 (ENSCCRG00000035574)	lsm6 (ENSCCRG00000079318)	pou4f2 (ENSCCRG00000067954)	ednraa (ENSCCRG00000064871)	tmem184c (ENSCCRG00000025121)	arhgap10 (ENSCCRG00000075379)	nr3c2 (ENSCCRG00000016208)	dclk2a (ENSCCRG00000023870)	ENSCCRG00000036286	ENSCCRG00000058577 ##30	scpp1 (ENSCCRG00000076200)	sparcl1 (ENSCCRG00000016120) ##22	galntl6 (ENSCCRG00000041366)	galnt7 (ENSCCRG00000040431)	hmgb2a (ENSCCRG00000060705)	hand2 (ENSCCRG00000002702)	cep44 (ENSCCRG00000001108)	fbxo8 (ENSCCRG00000069917)	glra3 (ENSCCRG00000050387)	ENSCCRG00000079948	gpm6ab (ENSCCRG00000074115)	wdr17 (ENSCCRG00000031233)	asb5b (ENSCCRG00000061922)	spcs3 (ENSCCRG00000031218)	vegfc (ENSCCRG00000000931)	ENSCCRG00000045275	dctd (ENSCCRG00000045283)
Cyprininae	ANCESTRAL SPECIES	164	ENSGT00940000154391.a.a.b	ENSGT00390000009908.f	ENSGT00940000167497	ENSGT00940000156063.k.f	ENSGT00940000154978.db	ENSGT00940000160339.a	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000155201.c.b	ENSGT00940000158472.c	ENSGT00940000159559.c	ENSGT00940000159333.m	ENSGT00940000154895.b.d.a	ENSGT00390000000973.a.b.a	ENSGT00510000046908.a.b.c ##30	ENSGT00740000117197.a	ENSGT00510000046787.e.a.b ##22	ENSGT00940000155038.qc	ENSGT00940000158105.l	ENSGT00940000154466.cc.a	ENSGT00940000160772.h	ENSGT00940000158356.l	ENSGT00390000009873.l	ENSGT00940000154593.a.b.j	ENSGT00940000158368.c	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.i.a	ENSGT00940000158602.i	ENSGT00940000165059.A.a	ENSGT00390000009223.rb	ENSGT00940000156167.b.a	ENSGT01030000234566.e.b.a.a.b
Goldfish	MODERN SPECIES	277				ZNF827 (ENSCARG00000024210)	lsm6 (ENSCARG00000024202)	pou4f2 (ENSCARG00000024194)	ednraa (ENSCARG00000024182)	tmem184c (ENSCARG00000023828)	prmt9 (ENSCARG00000023782)	arhgap10 (ENSCARG00000022973)	nr3c2 (ENSCARG00000022937)	dclk2a (ENSCARG00000020534)	FAM193A (ENSCARG00000020414)	ENSCARG00000020407 ##30	scpp1 (ENSCARG00000020402)	sparcl1 (ENSCARG00000020392) ##22	ENSCARG00000020385	ENSCARG00000020381	galntl6 (ENSCARG00000020263)	galnt7 (ENSCARG00000019556)	hmgb2a (ENSCARG00000019517)	hand2 (ENSCARG00000019511)	fbxo8 (ENSCARG00000019500)	cep44 (ENSCARG00000019483)	hpgd (ENSCARG00000019468)	ENSCARG00000019464	glra3 (ENSCARG00000019237)	gpm6ab (ENSCARG00000018978)	wdr17 (ENSCARG00000018888)	asb5b (ENSCARG00000018865)	ENSCARG00000048603
Cyprininae_a	ANCESTRAL SPECIES	157	ENSGT00940000154391.a.a.b	ENSGT00390000009908.f	ENSGT00940000167497	ENSGT00940000156063.k.f	ENSGT00940000154978.db	ENSGT00940000160339.a	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000155201.c.b	ENSGT00940000158472.c	ENSGT00940000159559.c	ENSGT00940000159333.m	ENSGT00940000154895.b.d.a	ENSGT00390000000973.a.b.a	ENSGT00510000046908.a.b.c ##30	ENSGT00740000117197.a	ENSGT00510000046787.e.a.b ##22	ENSGT00940000155038.qc	ENSGT00940000158105.l	ENSGT00940000154466.cc.a	ENSGT00940000160772.h	ENSGT00940000158356.l	ENSGT00390000009873.l	ENSGT00940000154593.a.b.j	ENSGT00940000158368.c	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.i.a	ENSGT00940000158602.i	ENSGT00940000165059.A.a	ENSGT00390000009223.rb	ENSGT00940000156167.b.a	ENSGT01030000234566.e.b.a.a.b
Common carp reference	MODERN SPECIES	27	ENSCCRG00000027251	mmaa (ENSCCRG00000032670)	zgc:152968 (ENSCCRG00000027221)	ZNF827 (ENSCCRG00000081976)	lsm6 (ENSCCRG00000069344)	pou4f2 (ENSCCRG00000056758)	ednraa (ENSCCRG00000056916)	tmem184c (ENSCCRG00000013098)	prmt9 (ENSCCRG00000028542)	arhgap10 (ENSCCRG00000069265)	nr3c2 (ENSCCRG00000003237)	dclk2a (ENSCCRG00000016187)	ENSCCRG00000036265	ENSCCRG00000074633	ENSCCRG00000016128 ##30	sparcl1 (ENSCCRG00000036272) ##22	ENSCCRG00000079193	galntl6 (ENSCCRG00000070371)	galnt7 (ENSCCRG00000002736)	hmgb2a (ENSCCRG00000079039)	hand2 (ENSCCRG00000040398)	cep44 (ENSCCRG00000002666)	fbxo8 (ENSCCRG00000065697)	hpgd (ENSCCRG00000061983)	glra3 (ENSCCRG00000049689)	ENSCCRG00000058509	gpm6ab (ENSCCRG00000024308)	wdr17 (ENSCCRG00000031139)	asb5b (ENSCCRG00000058956)	spcs3 (ENSCCRG00000032030)	vegfc (ENSCCRG00000075544)
Golden-line barbel	MODERN SPECIES	16	smad1 (ENSSGRG00000032356)	mmaa (ENSSGRG00000032357)	zgc:152968 (ENSSGRG00000032358)	ZNF827 (ENSSGRG00000032359)	lsm6 (ENSSGRG00000032360)	pou4f2 (ENSSGRG00000032362)	ednraa (ENSSGRG00000032364)	tmem184c (ENSSGRG00000032496)	prmt9 (ENSSGRG00000032638)	arhgap10 (ENSSGRG00000032639)	nr3c2 (ENSSGRG00000032646)	dclk2a (ENSSGRG00000032773)	FAM193A (ENSSGRG00000032892)	ENSSGRG00000032933 ##30	scpp1 (ENSSGRG00000032934)	sparcl1 (ENSSGRG00000032936) ##22	galntl6 (ENSSGRG00000032937)	galnt7 (ENSSGRG00000032938)	hmgb2a (ENSSGRG00000032939)	hand2 (ENSSGRG00000032940)	cep44 (ENSSGRG00000032942)	hpgd (ENSSGRG00000032943)	glra3 (ENSSGRG00000032951)	gpm6ab (ENSSGRG00000032955)	wdr17 (ENSSGRG00000032964)	asb5b (ENSSGRG00000033524)	spcs3 (ENSSGRG00000033525)	vegfc (ENSSGRG00000033530)	ENSSGRG00000033531	TENM3 (ENSSGRG00000033560)	dctd (ENSSGRG00000036221)
Zebrafish	MODERN SPECIES		zgc:152968 (ENSDARG00000037002)	ZNF827 (ENSDARG00000076171)	ENSDARG00000113986	lsm6 (ENSDARG00000036995)	pou4f2 (ENSDARG00000069737)	ENSDARG00000095555	ednraa (ENSDARG00000011876)	tmem184c (ENSDARG00000078789)	prmt9 (ENSDARG00000036755)	arhgap10 (ENSDARG00000078326)	nr3c2 (ENSDARG00000102082)	dclk2a (ENSDARG00000034093)	fam193a (ENSDARG00000102787)	ENSDARG00000074501 ##30	scpp1 (ENSDARG00000090416)	sparcl1 (ENSDARG00000074989) ##22	ENSDARG00000076343	ENSDARG00000077519	galntl6 (ENSDARG00000040048)	galnt7 (ENSDARG00000057303)	ENSDARG00000113575	hmgb2a (ENSDARG00000029722)	hand2 (ENSDARG00000008305)	fbxo8 (ENSDARG00000007477)	cep44 (ENSDARG00000053106)	hpgd (ENSDARG00000012016)	glra3 (ENSDARG00000011066)	gpm6ab (ENSDARG00000004621)	wdr17 (ENSDARG00000075098)	asb5b (ENSDARG00000053222)	spcs3 (ENSDARG00000089976)
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000158194	ENSGT00520000055589.d.a.b	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772	ENSGT00390000009191	ENSGT00940000154466.cc	ENSGT00940000158105	ENSGT00940000155038	ENSGT00390000000973.a.b	ENSGT00510000046908.a.b ##30	ENSGT00510000046787.e.a ##22	ENSGT00990000208074	ENSGT00940000156074.a.b	ENSGT00940000153745.b.f	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795.g	ENSGT00940000156325	ENSGT00940000158945.u.a	ENSGT01050000244857.B.a	ENSGT00630000089910	ENSGT00940000155633.D
Atlantic herring	MODERN SPECIES	14	ING2 (ENSCHAG00000025560)	STOX2 (ENSCHAG00000025558)	wdr17 (ENSCHAG00000024838)	GPM6A (ENSCHAG00000024720)	glra3 (ENSCHAG00000024546)	hpgd (ENSCHAG00000024535)	cep44 (ENSCHAG00000024534)	fbxo8 (ENSCHAG00000024519)	hand2 (ENSCHAG00000024514)	SCRG1 (ENSCHAG00000024508)	hmgb2a (ENSCHAG00000024498)	galnt7 (ENSCHAG00000024324)	galntl6 (ENSCHAG00000024248)	FAM193A (ENSCHAG00000024073)	TNIP2 (ENSCHAG00000024057) ##30	sparcl1 (ENSCHAG00000024042) ##22	scpp9 (ENSCHAG00000024033)	cnga1a (ENSCHAG00000024031)	tacr3a (ENSCHAG00000024017)	bdh2 (ENSCHAG00000023994)	ENSCHAG00000023975	cisd2 (ENSCHAG00000023972)	golt1bb (ENSCHAG00000023969)	suclg1 (ENSCHAG00000023961)	ENSCHAG00000023958	LRRTM1 (ENSCHAG00000023953)	ctnna2 (ENSCHAG00000023513)	fam151a (ENSCHAG00000023486)	acot11a (ENSCHAG00000023188)	ssbp3a (ENSCHAG00000023155)	mrpl37 (ENSCHAG00000023143)
Denticle herring	MODERN SPECIES	14	ccdc149b (ENSDCDG00000005589)	ING2 (ENSDCDG00000005583)	STOX2 (ENSDCDG00000005579)	wdr17 (ENSDCDG00000005508)	GPM6A (ENSDCDG00000005496)	glra3 (ENSDCDG00000005262)	hpgd (ENSDCDG00000005237)	cep44 (ENSDCDG00000005235)	fbxo8 (ENSDCDG00000005234)	hand2 (ENSDCDG00000005232)	hmgb2a (ENSDCDG00000005230)	galnt7 (ENSDCDG00000004931)	galntl6 (ENSDCDG00000004905)	FAM193A (ENSDCDG00000004875)	ENSDCDG00000004850 ##30	sparcl1 (ENSDCDG00000004794) ##22	scpp9 (ENSDCDG00000004780)	cnga1a (ENSDCDG00000034690)	tacr3a (ENSDCDG00000034688)	bdh2 (ENSDCDG00000034682)	ENSDCDG00000034669	cisd2 (ENSDCDG00000034666)	suclg1 (ENSDCDG00000034662)	LRRTM1 (ENSDCDG00000034656)	ctnna2 (ENSDCDG00000034495)	fam151a (ENSDCDG00000034480)	acot11a (ENSDCDG00000034465)	ssbp3a (ENSDCDG00000033477)	mrpl37 (ENSDCDG00000033421)	CDCP2 (ENSDCDG00000033419)	tceanc2 (ENSDCDG00000033417)
Euteleosteomorpha	ANCESTRAL SPECIES	38	ENSGT00510000047351.a	ENSGT00940000158467	ENSGT00940000155316	ENSGT00940000155521.b	ENSGT00940000164636	ENSGT00940000156432.a	ENSGT00940000156323.c.a	ENSGT00530000063614.a.b	ENSGT00940000175947	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000155128.a.b.a.b	ENSGT00950000183040.A.b.g	ENSGT00390000000973.a.b	ENSGT00940000164052	ENSGT00510000046787.e.a ##22	ENSGT00940000182397	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000156223
Acanthomorphata	ANCESTRAL SPECIES	80	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT01100000265707	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000157168
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT01100000265707	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00940000178602	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.b	ENSGT00550000075003	ENSGT00940000158131
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT01100000265707	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00940000178602	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000157168
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Carangaria	ANCESTRAL SPECIES		ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT01070000255175	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00940000178602	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00550000075003	ENSGT00940000158131
Tongue sole	MODERN SPECIES	19	TTC39B (ENSCSEG00000009806)	snapc3 (ENSCSEG00000009790)	PSIP1 (ENSCSEG00000009731)	bnc2 (ENSCSEG00000009710)	sh3gl2a (ENSCSEG00000009692)	ENSCSEG00000009669	trmo (ENSCSEG00000009666)	anp32b (ENSCSEG00000009653)	coro2aa (ENSCSEG00000009640)	uso1 (ENSCSEG00000009613)	g3bp2a (ENSCSEG00000009591) ##20	SMU1 (ENSCSEG00000009575)	dnaja1 (ENSCSEG00000009567)	aptx (ENSCSEG00000009549)	ENSCSEG00000009545	ENSCSEG00000009518 ##22	odam (ENSCSEG00000009497)	ENSCSEG00000009491	scpp5 (ENSCSEG00000009482)	cnga1a (ENSCSEG00000009469)	TACR3 (ENSCSEG00000009462)	bdh2 (ENSCSEG00000009447)	ENSCSEG00000009405	cisd2 (ENSCSEG00000009437)	suclg1 (ENSCSEG00000009370)	LRRTM1 (ENSCSEG00000009356)	ctnna2 (ENSCSEG00000009286)	ADRA1D (ENSCSEG00000009270)	ENSCSEG00000009242	mettl14 (ENSCSEG00000009185)	PRSS12 (ENSCSEG00000009112)
Turbot	MODERN SPECIES	20	ENSSMAG00000008377	DHX15 (ENSSMAG00000008335)	SOD3 (ENSSMAG00000008541)	CCDC149 (ENSSMAG00000008558)	LGI2 (ENSSMAG00000008595)	ENSSMAG00000024412	ENSSMAG00000008986	ENSSMAG00000008965	ENSSMAG00000008944	ENSSMAG00000027574	rps6 (ENSSMAG00000008931)	ENSSMAG00000008909	SMU1 (ENSSMAG00000008879)	dnaja1 (ENSSMAG00000008868)	APTX (ENSSMAG00000008839)	ENSSMAG00000008822 ##22	odam (ENSSMAG00000008813)	ENSSMAG00000008801	scpp5 (ENSSMAG00000008766)	cnga1a (ENSSMAG00000008736)	TACR3 (ENSSMAG00000035648)	bdh2 (ENSSMAG00000008674)	ENSSMAG00000008657	cisd2 (ENSSMAG00000032259)	SUCLG1 (ENSSMAG00000008628)	ENSSMAG00000008610	LRRTM1 (ENSSMAG00000009055)	ENSSMAG00000009082	ENSSMAG00000024371	ENSSMAG00000021740	ENSSMAG00000022575
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT01070000255175	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a
Seriola	ANCESTRAL SPECIES	29	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT01070000255175	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a
Yellowtail amberjack	MODERN SPECIES	2974	dhx15 (ENSSLDG00000005338)	SOD3 (ENSSLDG00000005325)	ccdc149b (ENSSLDG00000005229)	lgi2b (ENSSLDG00000005189)	C4orf54 (ENSSLDG00000005177)	mttp (ENSSLDG00000005150)	tspan5b (ENSSLDG00000005104)	ACER2 (ENSSLDG00000005071)	ENSSLDG00000005049	rps6 (ENSSLDG00000005018)	ENSSLDG00000004995	SMU1 (ENSSLDG00000004975)	dnaja1 (ENSSLDG00000004934)	aptx (ENSSLDG00000004915)	ENSSLDG00000004895	sparcl1 (ENSSLDG00000004844) ##22	odam (ENSSLDG00000004794)	scpp5 (ENSSLDG00000004766)	cnga1a (ENSSLDG00000004724)	TACR3 (ENSSLDG00000004685)	ENSSLDG00000004661	bdh2 (ENSSLDG00000004615)	ENSSLDG00000004586	cisd2 (ENSSLDG00000004561)	suclg1 (ENSSLDG00000004481)	LRRTM1 (ENSSLDG00000004459)	ctnna2 (ENSSLDG00000004360)	ADRA1D (ENSSLDG00000004332)	ENSSLDG00000004314	ENSSLDG00000004305	ENSSLDG00000004285
Greater amberjack	MODERN SPECIES	101	dhx15 (ENSSDUG00000002650)	SOD3 (ENSSDUG00000002638)	ccdc149b (ENSSDUG00000002537)	lgi2b (ENSSDUG00000002485)	C4orf54 (ENSSDUG00000002469)	mttp (ENSSDUG00000002197)	tspan5b (ENSSDUG00000002128)	ACER2 (ENSSDUG00000002108)	ENSSDUG00000002096	rps6 (ENSSDUG00000002076)	ENSSDUG00000002063	SMU1 (ENSSDUG00000002047)	dnaja1 (ENSSDUG00000002008)	aptx (ENSSDUG00000001989)	ENSSDUG00000001984	sparcl1 (ENSSDUG00000001949) ##22	odam (ENSSDUG00000001922)	ENSSDUG00000001908	ENSSDUG00000001895	cnga1a (ENSSDUG00000001877)	TACR3 (ENSSDUG00000001040)	bdh2 (ENSSDUG00000000922)	ENSSDUG00000000910	cisd2 (ENSSDUG00000000891)	suclg1 (ENSSDUG00000000852)	LRRTM1 (ENSSDUG00000000842)	ctnna2 (ENSSDUG00000000813)	ADRA1D (ENSSDUG00000000779)	ENSSDUG00000000767	ENSSDUG00000000739	ENSSDUG00000000728
Barramundi perch	MODERN SPECIES	108	slc22a7b.1 (ENSLCAG00010002536)	ENSLCAG00010002484	dhx15 (ENSLCAG00010002443)	SOD3 (ENSLCAG00010002438)	ccdc149b (ENSLCAG00010002435)	lgi2b (ENSLCAG00010002432)	mttp (ENSLCAG00010002363)	ENSLCAG00010002327	ACER2 (ENSLCAG00010002321)	ENSLCAG00010002319	rps6 (ENSLCAG00010002276)	ENSLCAG00010002265	SMU1 (ENSLCAG00010002262)	dnaja1 (ENSLCAG00010002259)	aptx (ENSLCAG00010002255)	sparcl1 (ENSLCAG00010002249) ##22	odam (ENSLCAG00010002243)	ENSLCAG00010002237	cnga1a (ENSLCAG00010002235)	TACR3 (ENSLCAG00010002224)	bdh2 (ENSLCAG00010002216)	ENSLCAG00010002211	cisd2 (ENSLCAG00010002204)	suclg1 (ENSLCAG00010002194)	LRRTM1 (ENSLCAG00010002183)	ctnna2 (ENSLCAG00010002082)	ADRA1D (ENSLCAG00010002021)	ENSLCAG00010002017	ENSLCAG00010002002	ENSLCAG00010002000	ENSLCAG00010001992
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00550000075003
Zig-zag eel	MODERN SPECIES		DHX15 (ENSMAMG00000018097)	SOD3 (ENSMAMG00000018151)	CCDC149 (ENSMAMG00000018161)	LGI2 (ENSMAMG00000018172)	ENSMAMG00000018189	ENSMAMG00000018194	ENSMAMG00000018206	ENSMAMG00000018219	rps6 (ENSMAMG00000018234)	ENSMAMG00000018255	ENSMAMG00000018266	SMU1 (ENSMAMG00000018274)	dnaja1 (ENSMAMG00000018358)	APTX (ENSMAMG00000018377)	ENSMAMG00000026272	ENSMAMG00000018394 ##22	ENSMAMG00000025792	odam (ENSMAMG00000018415)	ENSMAMG00000018437	ENSMAMG00000018444	scpp5 (ENSMAMG00000018457)	cnga1a (ENSMAMG00000018476)	TACR3 (ENSMAMG00000018492)	bdh2 (ENSMAMG00000018504)	ENSMAMG00000018544	cisd2 (ENSMAMG00000028273)	suclg1 (ENSMAMG00000018563)	ctnna2 (ENSMAMG00000018570)	LRRTM1 (ENSMAMG00000018584)	ENSMAMG00000018587	ENSMAMG00000028568
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000019074	ENSBSLG00000019059	ENSBSLG00000019010	psmd12 (ENSBSLG00000018800)	helz (ENSBSLG00000018255)	CACNG4 (ENSBSLG00000018186)	cacng5a (ENSBSLG00000018034)	prkcaa (ENSBSLG00000017304)	APOH (ENSBSLG00000017231)	ENSBSLG00000016983	nol11 (ENSBSLG00000017069)	SMU1 (ENSBSLG00000016940)	dnaja1 (ENSBSLG00000016905)	aptx (ENSBSLG00000016849)	ENSBSLG00000016827	sparcl1 (ENSBSLG00000016712) ##22	odam (ENSBSLG00000016616)	ENSBSLG00000016574	ENSBSLG00000016040	scpp5 (ENSBSLG00000016035)	cnga1a (ENSBSLG00000016015)	TACR3 (ENSBSLG00000015997)	bdh2 (ENSBSLG00000015992)	SLC9B2 (ENSBSLG00000015950)	cisd2 (ENSBSLG00000015941)	suclg1 (ENSBSLG00000015918)	ENSBSLG00000015913	ctnna2 (ENSBSLG00000015049)	ENSBSLG00000015024	ENSBSLG00000015020	mettl14 (ENSBSLG00000014933)
Climbing perch	MODERN SPECIES		DHX15 (ENSATEG00000017033)	SOD3 (ENSATEG00000017084)	CCDC149 (ENSATEG00000017098)	LGI2 (ENSATEG00000028634)	ENSATEG00000017128	ENSATEG00000017133	ENSATEG00000017147	ENSATEG00000017175	rps6 (ENSATEG00000017195)	ENSATEG00000017215	ENSATEG00000017230	SMU1 (ENSATEG00000017248)	dnaja1 (ENSATEG00000017364)	APTX (ENSATEG00000017383)	ENSATEG00000017394	ENSATEG00000017406 ##22	odam (ENSATEG00000017419)	ENSATEG00000017442	ENSATEG00000017452	scpp5 (ENSATEG00000017465)	cnga1a (ENSATEG00000017513)	TACR3 (ENSATEG00000017574)	bdh2 (ENSATEG00000017607)	SLC9B1 (ENSATEG00000017642)	cisd2 (ENSATEG00000017657)	suclg1 (ENSATEG00000017672)	ctnna2 (ENSATEG00000017691)	LRRTM1 (ENSATEG00000017745)	ENSATEG00000017749	ENSATEG00000017762	ENSATEG00000017785
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b
Tetraodontidae	ANCESTRAL SPECIES	33	ENSGT00940000156270	ENSGT00940000161451.a.a	ENSGT00940000164430.a.b.b	ENSGT00940000159130	ENSGT00390000003582.d	ENSGT00940000164982.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000161376	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT01030000238513	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000155512.q.a	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660
Fugu	MODERN SPECIES	8	PNPLA6 (ENSTRUG00000008121)	atp5pd (ENSTRUG00000008920)	ENSTRUG00000008992	ENSTRUG00000000100	ENSTRUG00000026715	ENSTRUG00000027242	ENSTRUG00000033345	ENSTRUG00000003235	ENSTRUG00000026905	ACER2 (ENSTRUG00000009432)	ENSTRUG00000030071	rps6 (ENSTRUG00000025649)	ENSTRUG00000009584	aptx (ENSTRUG00000009794)	scpp1 (ENSTRUG00000009840)	ENSTRUG00000009856 ##22	scpp2 (ENSTRUG00000010164)	ENSTRUG00000031165	scpp3b (ENSTRUG00000010211)	scpp4 (ENSTRUG00000010217)	scpp5 (ENSTRUG00000010241)	cnga1a (ENSTRUG00000010274)	tacr3 (ENSTRUG00000017556)	bdh2 (ENSTRUG00000010690)	ENSTRUG00000010782	cisd2 (ENSTRUG00000010955)	dctd (ENSTRUG00000010985)	scpp3c (ENSTRUG00000010197)	vegfc (ENSTRUG00000011792)	ENSTRUG00000011908	rab11fip4b (ENSTRUG00000011924)
Tetraodon	MODERN SPECIES	10	shoc2 (ENSTNIG00000010580)	adra2a (ENSTNIG00000010579)	PNPLA6 (ENSTNIG00000010578)	atp5pd (ENSTNIG00000000018)	ENSTNIG00000010577	ENSTNIG00000000592	ENSTNIG00000010576	ENSTNIG00000010575	tspan5b (ENSTNIG00000010574)	ACER2 (ENSTNIG00000010573)	rps6 (ENSTNIG00000010572)	ENSTNIG00000001131	ENSTNIG00000010571	aptx (ENSTNIG00000010570)	ENSTNIG00000001180	ENSTNIG00000010569 ##22	odam (ENSTNIG00000010568)	ENSTNIG00000010567	ENSTNIG00000000359	ENSTNIG00000010566	scpp5 (ENSTNIG00000010565)	cnga1a (ENSTNIG00000010564)	ENSTNIG00000010563	bdh2 (ENSTNIG00000010562)	ENSTNIG00000010561	dctd (ENSTNIG00000010560)	TENM3 (ENSTNIG00000005377)	slc2a15a (ENSTNIG00000006363)	fgf8a (ENSTNIG00000006362)	fbxw4 (ENSTNIG00000005242)	wbp1la (ENSTNIG00000005241)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	206	ENSLBEG00000022217	dhx15 (ENSLBEG00000022156)	SOD3 (ENSLBEG00000022122)	ccdc149b (ENSLBEG00000022068)	lgi2b (ENSLBEG00000022018)	ENSLBEG00000021995	mttp (ENSLBEG00000021966)	tspan5b (ENSLBEG00000021943)	ACER2 (ENSLBEG00000021889)	ENSLBEG00000021852	rps6 (ENSLBEG00000021824)	ENSLBEG00000021807	SMU1 (ENSLBEG00000021787)	dnaja1 (ENSLBEG00000021625)	aptx (ENSLBEG00000021489)	sparcl1 (ENSLBEG00000021438) ##22	odam (ENSLBEG00000021396)	ENSLBEG00000021372	scpp5 (ENSLBEG00000021351)	cnga1a (ENSLBEG00000021308)	TACR3 (ENSLBEG00000021286)	bdh2 (ENSLBEG00000021228)	ENSLBEG00000021146	cisd2 (ENSLBEG00000021113)	suclg1 (ENSLBEG00000021066)	ctnna2 (ENSLBEG00000021031)	LRRTM1 (ENSLBEG00000021006)
Ballan wrasse	MODERN SPECIES	2047																sparcl1 (ENSLBEG00000017341) ##22
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT01070000255175	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00740000115955.D.a	ENSGT00550000075003
Lumpfish	MODERN SPECIES		ENSCLMG00005006825	ENSCLMG00005006822	DHX15 (ENSCLMG00005005603)	SOD3 (ENSCLMG00005005587)	ccdc149b (ENSCLMG00005005583)	lgi2b (ENSCLMG00005005510)	ENSCLMG00005005505	mttp (ENSCLMG00005005500)	ENSCLMG00005005487	ACER2 (ENSCLMG00005005485)	ENSCLMG00005005483	rps6 (ENSCLMG00005005482)	SMU1 (ENSCLMG00005005479)	dnaja1 (ENSCLMG00005005467)	aptx (ENSCLMG00005005461)	ENSCLMG00005005442 ##22	odam (ENSCLMG00005005438)	ENSCLMG00005005437	ENSCLMG00005005434	ENSCLMG00005005433	cnga1a (ENSCLMG00005005432)	TACR3 (ENSCLMG00005005241)	bdh2 (ENSCLMG00005005238)	ENSCLMG00005004048	cisd2 (ENSCLMG00005004046)	suclg1 (ENSCLMG00005004045)	LRRTM1 (ENSCLMG00005004041)	ctnna2 (ENSCLMG00005003050)	ADRA1D (ENSCLMG00005002967)	ENSCLMG00005002962	mettl14 (ENSCLMG00005002849)
Stickleback	MODERN SPECIES	4	psmd5 (ENSGACG00000017809)	SLC22A7 (ENSGACG00000017814)	dhx15 (ENSGACG00000017826)	SOD3 (ENSGACG00000017840)	ccdc149b (ENSGACG00000017841)	lgi2b (ENSGACG00000017845)	mttp (ENSGACG00000017850)	tspan5b (ENSGACG00000017858)	ACER2 (ENSGACG00000017860)	rps6 (ENSGACG00000017861)	ENSGACG00000017870	SMU1 (ENSGACG00000017872)	dnaja1 (ENSGACG00000017879)	aptx (ENSGACG00000017887)	ENSGACG00000017889	sparcl1 (ENSGACG00000017892) ##22	odam (ENSGACG00000017898)	cnga1a (ENSGACG00000017900)	TACR3 (ENSGACG00000017903)	bdh2 (ENSGACG00000017906)	ENSGACG00000017922	cisd2 (ENSGACG00000017930)	suclg1 (ENSGACG00000017932)	ctnna2 (ENSGACG00000017985)	LRRTM1 (ENSGACG00000017992)	ADRA1D (ENSGACG00000017994)	ENSGACG00000017996	ENSGACG00000018001	mettl14 (ENSGACG00000018009)	PRSS12 (ENSGACG00000018013)	ENSGACG00000018022
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773
Channel bull blenny	MODERN SPECIES		ENSCGOG00000018447	ENSCGOG00000018450	dhx15 (ENSCGOG00000018474)	SOD3 (ENSCGOG00000019346)	ccdc149b (ENSCGOG00000019266)	lgi2b (ENSCGOG00000019348)	mttp (ENSCGOG00000019361)	TSPAN5 (ENSCGOG00000000162)	ACER2 (ENSCGOG00000000261)	rps6 (ENSCGOG00000000268)	ENSCGOG00000000279	ENSCGOG00000000282	SMU1 (ENSCGOG00000000296)	dnaja1 (ENSCGOG00000000315)	aptx (ENSCGOG00000000316)	sparcl1 (ENSCGOG00000000317) ##22	odam (ENSCGOG00000000320)	ENSCGOG00000000324	ENSCGOG00000000328	scpp5 (ENSCGOG00000000332)	cnga1a (ENSCGOG00000000336)	TACR3 (ENSCGOG00000000342)	bdh2 (ENSCGOG00000000375)	ENSCGOG00000000405	cisd2 (ENSCGOG00000000443)	suclg1 (ENSCGOG00000000489)	ctnna2 (ENSCGOG00000000736)	LRRTM1 (ENSCGOG00000001246)	ADRA1D (ENSCGOG00000001249)	ENSCGOG00000001251	ENSCGOG00000001254
Pike perch	MODERN SPECIES	45	ENSSLUG00000017259	dhx15 (ENSSLUG00000016366)	SOD3 (ENSSLUG00000016313)	ccdc149b (ENSSLUG00000016306)	lgi2b (ENSSLUG00000016265)	C4orf54 (ENSSLUG00000016249)	mttp (ENSSLUG00000014901)	tspan5b (ENSSLUG00000014762)	ACER2 (ENSSLUG00000014747)	ENSSLUG00000014740	rps6 (ENSSLUG00000014713)	ENSSLUG00000014701	SMU1 (ENSSLUG00000014681)	dnaja1 (ENSSLUG00000014665)	aptx (ENSSLUG00000014656)	sparcl1 (ENSSLUG00000014651) ##22	odam (ENSSLUG00000014644)	ENSSLUG00000014639	ENSSLUG00000014634	ENSSLUG00000014631	cnga1a (ENSSLUG00000014626)	TACR3 (ENSSLUG00000014476)	bdh2 (ENSSLUG00000014451)	ENSSLUG00000014432	cisd2 (ENSSLUG00000014428)	suclg1 (ENSSLUG00000014350)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000179599	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.d
European seabass	MODERN SPECIES	20	SOD3 (ENSDLAG00005033522)	CCDC149 (ENSDLAG00005002018)	LGI2 (ENSDLAG00005002000)	ENSDLAG00005001989	ENSDLAG00005001997	ENSDLAG00005001795	ENSDLAG00005001724	ENSDLAG00005031100	ENSDLAG00005001699	rps6 (ENSDLAG00005001669)	ENSDLAG00005001655	SMU1 (ENSDLAG00005001623)	dnaja1 (ENSDLAG00005001607)	APTX (ENSDLAG00005001582)	ENSDLAG00005001571	ENSDLAG00005001560 ##22	odam (ENSDLAG00005001549)	ENSDLAG00005001540	ENSDLAG00005034495	scpp5 (ENSDLAG00005001517)	cnga1a (ENSDLAG00005001510)	TACR3 (ENSDLAG00005001481)	bdh2 (ENSDLAG00005001375)	ENSDLAG00005026321	cisd2 (ENSDLAG00005026320)	suclg1 (ENSDLAG00005026319)	ENSDLAG00005033412	ctnna2 (ENSDLAG00005026311)	ENSDLAG00005026305	ENSDLAG00005026304	ENSDLAG00005005187
Large yellow croaker	MODERN SPECIES	481	dhx15 (ENSLCRG00005012047)	sod3 (ENSLCRG00005012033)	ccdc149b (ENSLCRG00005011913)	lgi2b (ENSLCRG00005011907)	C4orf54 (ENSLCRG00005011905)	mttp (ENSLCRG00005010184)	tspan5b (ENSLCRG00005010157)	ACER2 (ENSLCRG00005010154)	ENSLCRG00005010151	rps6 (ENSLCRG00005010141)	ENSLCRG00005010139	SMU1 (ENSLCRG00005010138)	dnaja1 (ENSLCRG00005010136)	aptx (ENSLCRG00005010135)	ENSLCRG00005010133	ENSLCRG00005010131 ##22	odam (ENSLCRG00005010130)	ENSLCRG00005010129	ENSLCRG00005010128	ENSLCRG00005010127	cnga1a (ENSLCRG00005010125)	ENSLCRG00005010124	ADRA1D (ENSLCRG00005010123)	LRRTM1 (ENSLCRG00005010122)	ctnna2 (ENSLCRG00005009175)	cisd2 (ENSLCRG00005009143)	suclg1 (ENSLCRG00005009107)	cisd2 (ENSLCRG00005009102)	ENSLCRG00005008969	bdh2 (ENSLCRG00005008955)	TACR3 (ENSLCRG00005008938)
Gilthead seabream	MODERN SPECIES		slc22a7b.1 (ENSSAUG00010015239)	ENSSAUG00010015243	dhx15 (ENSSAUG00010015340)	SOD3 (ENSSAUG00010015634)	ccdc149b (ENSSAUG00010015638)	lgi2b (ENSSAUG00010015645)	mttp (ENSSAUG00010015720)	ENSSAUG00010017833	ACER2 (ENSSAUG00010017874)	rps6 (ENSSAUG00010017877)	ENSSAUG00010017880	SMU1 (ENSSAUG00010017881)	dnaja1 (ENSSAUG00010017883)	aptx (ENSSAUG00010017893)	ENSSAUG00010017895	sparcl1 (ENSSAUG00010017897) ##22	odam (ENSSAUG00010017903)	ENSSAUG00010017905	ENSSAUG00010017911	scpp5 (ENSSAUG00010017912)	cnga1a (ENSSAUG00010017915)	TACR3 (ENSSAUG00010017918)	bdh2 (ENSSAUG00010017950)	ENSSAUG00010017960	cisd2 (ENSSAUG00010017977)	suclg1 (ENSSAUG00010017983)	ENSSAUG00010017999	ctnna2 (ENSSAUG00010018035)	ENSSAUG00010018861	ENSSAUG00010018862	ADRA1D (ENSSAUG00010018863)
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00550000075003	ENSGT00940000158131
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00550000075003	ENSGT00940000158131
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000154922.b.v.b	ENSGT00940000154922.b.v.a	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00550000075003	ENSGT00940000158131
Mangrove rivulus	MODERN SPECIES		ENSKMAG00000000131	dhx15 (ENSKMAG00000000130)	SOD3 (ENSKMAG00000000129)	ccdc149b (ENSKMAG00000000128)	lgi2b (ENSKMAG00000000127)	ENSKMAG00000000126	mttp (ENSKMAG00000000125)	ENSKMAG00000000124	ACER2 (ENSKMAG00000000123)	rps6 (ENSKMAG00000000122)	ENSKMAG00000000121	spag6 (ENSKMAG00000000120)	SMU1 (ENSKMAG00000000119)	dnaja1 (ENSKMAG00000000118)	aptx (ENSKMAG00000000117)	ENSKMAG00000000116 ##22	odam (ENSKMAG00000000115)	scpp5 (ENSKMAG00000000114)	cnga1a (ENSKMAG00000000113)	TACR3 (ENSKMAG00000000112)	bdh2 (ENSKMAG00000000111)	ENSKMAG00000000110	cisd2 (ENSKMAG00000000109)	suclg1 (ENSKMAG00000000108)	LRRTM1 (ENSKMAG00000000107)	ctnna2 (ENSKMAG00000000106)	ADRA1D (ENSKMAG00000000105)	ENSKMAG00000000104	mettl14 (ENSKMAG00000000103)	PRSS12 (ENSKMAG00000000102)	ENSKMAG00000000101
Turquoise killifish	MODERN SPECIES	1611	sgms2a (ENSNFUG00015001970)	CYP2U1 (ENSNFUG00015001961)	CCDC149B (ENSNFUG00015001942)	LGI2B (ENSNFUG00015001914)	C4orf54 (ENSNFUG00015001904)	ENSNFUG00015001897	MTP (ENSNFUG00015001750)	TSPAN5 (ENSNFUG00015001722)	ACER2 (ENSNFUG00015001712)	RPS6 (ENSNFUG00015001705)	PLIN1 (ENSNFUG00015001701)	SMU1 (ENSNFUG00015001675)	DNAJA1L (ENSNFUG00015001639)	APTX (ENSNFUG00015001623)	ENSNFUG00015001619	SPARCL1 (ENSNFUG00015001609) ##22	odam (ENSNFUG00015001604)	ENSNFUG00015001584	ENSNFUG00015001575	cnga1a (ENSNFUG00015001567)	ENSNFUG00015001562	TACR3 (ENSNFUG00015001541)	bdh2 (ENSNFUG00015001532)	SLC9B2 (ENSNFUG00015001499)	CISD2 (ENSNFUG00015001471)	SUCLG1 (ENSNFUG00015001449)	ENSNFUG00015001443	ENSNFUG00015001440	ENSNFUG00015001439	LRRTM1 (ENSNFUG00015001436)	ctnna2 (ENSNFUG00015001311)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00740000115955.D	ENSGT00550000075003	ENSGT00940000158131
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00740000115955.D	ENSGT00550000075003	ENSGT00940000158131
Poecilia	ANCESTRAL SPECIES	6	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00950000183052.b.c.b.b.b.a.b.b.a.b.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00740000115955.D	ENSGT00550000075003	ENSGT00940000158131
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00950000183052.b.c.b.b.b.a.b.b.a.b.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000182429	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00740000115955.D	ENSGT00550000075003
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	296	ENSPFOG00000020385	mttp (ENSPFOG00000003943)	tspan5b (ENSPFOG00000004326)	ACER2 (ENSPFOG00000004542)	rps6 (ENSPFOG00000004680)	ENSPFOG00000004741	ENSPFOG00000004777	SMU1 (ENSPFOG00000004788)	dnaja1 (ENSPFOG00000004920)	aptx (ENSPFOG00000004992)	ENSPFOG00000005019	sparcl1 (ENSPFOG00000005061) ##22	dnaja1 (ENSPFOG00000005099)	aptx (ENSPFOG00000005131)	ENSPFOG00000023226	sparcl1 (ENSPFOG00000005161) ##22	ENSPFOG00000024459	odam (ENSPFOG00000005258)	ENSPFOG00000005315	scpp5 (ENSPFOG00000005320)	cnga1a (ENSPFOG00000005330)	ENSPFOG00000005374	bdh2 (ENSPFOG00000022157)	ENSPFOG00000005436	cisd2 (ENSPFOG00000005678)	suclg1 (ENSPFOG00000005681)	ENSPFOG00000020386	ctnna2 (ENSPFOG00000005755)	LRRTM1 (ENSPFOG00000020387)	ENSPFOG00000005837	ADRA1D (ENSPFOG00000005849)
Amazon molly	MODERN SPECIES	296	dhx15 (ENSPFOG00000003634)	SOD3 (ENSPFOG00000020384)	ccdc149b (ENSPFOG00000003844)	lgi2b (ENSPFOG00000003854)	ENSPFOG00000020385	mttp (ENSPFOG00000003943)	tspan5b (ENSPFOG00000004326)	ACER2 (ENSPFOG00000004542)	rps6 (ENSPFOG00000004680)	ENSPFOG00000004741	ENSPFOG00000004777	SMU1 (ENSPFOG00000004788)	dnaja1 (ENSPFOG00000004920)	aptx (ENSPFOG00000004992)	ENSPFOG00000005019	sparcl1 (ENSPFOG00000005061) ##22	dnaja1 (ENSPFOG00000005099)	aptx (ENSPFOG00000005131)	ENSPFOG00000023226	sparcl1 (ENSPFOG00000005161) ##22	ENSPFOG00000024459	odam (ENSPFOG00000005258)	ENSPFOG00000005315	scpp5 (ENSPFOG00000005320)	cnga1a (ENSPFOG00000005330)	ENSPFOG00000005374	bdh2 (ENSPFOG00000022157)	ENSPFOG00000005436	cisd2 (ENSPFOG00000005678)	suclg1 (ENSPFOG00000005681)	ENSPFOG00000020386
Sailfin molly	MODERN SPECIES	3268																sparcl1 (ENSPLAG00000003564) ##22
Guppy	MODERN SPECIES	439	dhx15 (ENSPREG00000004656)	SOD3 (ENSPREG00000004644)	ccdc149b (ENSPREG00000004627)	lgi2b (ENSPREG00000004594)	ENSPREG00000004582	mttp (ENSPREG00000004546)	tspan5b (ENSPREG00000004513)	ACER2 (ENSPREG00000004503)	rps6 (ENSPREG00000004484)	ENSPREG00000004472	ENSPREG00000004446	SMU1 (ENSPREG00000004424)	dnaja1 (ENSPREG00000004402)	aptx (ENSPREG00000004375)	ENSPREG00000004361	sparcl1 (ENSPREG00000004346) ##22	ENSPREG00000004322	tbck (ENSPREG00000004214)	EEF1A1 (ENSPREG00000004165)	ENSPREG00000004085	ENSPREG00000004028	ENSPREG00000003965	krt97 (ENSPREG00000003948)	KRT222 (ENSPREG00000003924)	ENSPREG00000003902	ccr7 (ENSPREG00000003896)	SMARCE1 (ENSPREG00000003882)	IGFBP4 (ENSPREG00000003872)	ENSPREG00000003847	MLLT6 (ENSPREG00000003817)	ENSPREG00000003793
Platyfish	MODERN SPECIES	19	slc22a7b.1 (ENSXMAG00000005710)	ENSXMAG00000005712	ENSXMAG00000005714	SOD3 (ENSXMAG00000005743)	ccdc149b (ENSXMAG00000005739)	lgi2b (ENSXMAG00000005745)	ENSXMAG00000023009	mttp (ENSXMAG00000005761)	tspan5b (ENSXMAG00000005800)	ACER2 (ENSXMAG00000005820)	rps6 (ENSXMAG00000005833)	ENSXMAG00000005840	SMU1 (ENSXMAG00000005844)	dnaja1 (ENSXMAG00000005855)	aptx (ENSXMAG00000022086)	sparcl1 (ENSXMAG00000005879) ##22	odam (ENSXMAG00000005905)	ENSXMAG00000028631	scpp5 (ENSXMAG00000028166)	cnga1a (ENSXMAG00000005912)	ENSXMAG00000025288	bdh2 (ENSXMAG00000025338)	ENSXMAG00000005936	cisd2 (ENSXMAG00000005961)	suclg1 (ENSXMAG00000005966)	ENSXMAG00000023963	LRRTM1 (ENSXMAG00000020008)	ctnna2 (ENSXMAG00000004800)	ADRA1D (ENSXMAG00000004797)	ENSXMAG00000020007	ENSXMAG00000026999
NAME_4	ANCESTRAL SPECIES	44	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138
Mummichog	MODERN SPECIES	371	ENSFHEG00000021631	ENSFHEG00000021590	dhx15 (ENSFHEG00000021568)	SOD3 (ENSFHEG00000021548)	ccdc149b (ENSFHEG00000021531)	lgi2b (ENSFHEG00000021520)	ENSFHEG00000021470	mttp (ENSFHEG00000021466)	tspan5b (ENSFHEG00000021453)	ACER2 (ENSFHEG00000021443)	rps6 (ENSFHEG00000021406)	ENSFHEG00000021368	ENSFHEG00000021358	ENSFHEG00000021343	aptx (ENSFHEG00000021328)	ENSFHEG00000021292 ##22	ENSFHEG00000021263
Sheepshead minnow	MODERN SPECIES	825	ENSCVAG00000011615	dhx15 (ENSCVAG00000011673)	SOD3 (ENSCVAG00000011680)	ccdc149b (ENSCVAG00000011690)	lgi2b (ENSCVAG00000011706)	ENSCVAG00000011711	mttp (ENSCVAG00000011755)	tspan5b (ENSCVAG00000011780)	ACER2 (ENSCVAG00000011794)	ENSCVAG00000011809	rps6 (ENSCVAG00000011832)	ENSCVAG00000011841	SMU1 (ENSCVAG00000011918)	dnaja1 (ENSCVAG00000011925)	aptx (ENSCVAG00000011942)	ENSCVAG00000011952 ##22	ENSCVAG00000011981
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000157168
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00940000178602	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000179599	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Javanese ricefish	MODERN SPECIES		ENSOJAG00000012171	slc22a7b.1 (ENSOJAG00000000062)	ENSOJAG00000000127	dhx15 (ENSOJAG00000000187)	SOD3 (ENSOJAG00000000199)	ccdc149b (ENSOJAG00000000208)	lgi2b (ENSOJAG00000000215)	mttp (ENSOJAG00000000236)	ENSOJAG00000000276	ACER2 (ENSOJAG00000000289)	rps6 (ENSOJAG00000000300)	ENSOJAG00000000311	SMU1 (ENSOJAG00000000328)	dnaja1 (ENSOJAG00000000395)	aptx (ENSOJAG00000000444)	sparcl1 (ENSOJAG00000000459) ##22	ENSOJAG00000000468	ENSOJAG00000000475	tacr3l (ENSOJAG00000000477)	acy3.2 (ENSOJAG00000000486)	cldnd1b (ENSOJAG00000000494)	ENSOJAG00000000502	ENSOJAG00000000513	ENSOJAG00000000535	pds5a (ENSOJAG00000000640)	rhoh (ENSOJAG00000000762)	CHRNA9 (ENSOJAG00000000772)	ENSOJAG00000000779	DRD5 (ENSOJAG00000000782)	slit2 (ENSOJAG00000001090)	ENSOJAG00000002426
Indian medaka	MODERN SPECIES	21	primpol (ENSOMEG00000007379)	acsl1a (ENSOMEG00000007460)	helt (ENSOMEG00000007487)	slc25a4 (ENSOMEG00000007501)	ENSOMEG00000007518	mttp (ENSOMEG00000007589)	ENSOMEG00000007653	ACER2 (ENSOMEG00000007693)	ENSOMEG00000007706	rps6 (ENSOMEG00000007732)	ENSOMEG00000007754	SMU1 (ENSOMEG00000007796)	dnaja1 (ENSOMEG00000007835)	aptx (ENSOMEG00000007875)	ENSOMEG00000007883	sparcl1 (ENSOMEG00000007910) ##22	odam (ENSOMEG00000007928)	ENSOMEG00000007940	scpp5 (ENSOMEG00000007954)	cnga1a (ENSOMEG00000007986)	TACR3 (ENSOMEG00000008412)	bdh2 (ENSOMEG00000008604)	ENSOMEG00000008651	cisd2 (ENSOMEG00000008665)	suclg1 (ENSOMEG00000008705)	LRRTM1 (ENSOMEG00000008738)	ctnna2 (ENSOMEG00000008786)	ADRA1D (ENSOMEG00000008810)	ENSOMEG00000008846	mettl14 (ENSOMEG00000008909)	PRSS12 (ENSOMEG00000008977)
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT00390000017452	ENSGT00940000160184.c.b	ENSGT00530000063713.b.a	ENSGT00940000157511	ENSGT00940000159443	ENSGT00390000017281	ENSGT00950000182942.a.a	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000157168
Japanese Medaka HdrR	MODERN SPECIES		mogs (ENSORLG00000026440)	ENSORLG00000028130	FBXO41 (ENSORLG00000006366)	smox (ENSORLG00000006356)	rnf24 (ENSORLG00000006343)	ENSORLG00000006331	glb1 (ENSORLG00000020297)	ACER2 (ENSORLG00000006319)	ENSORLG00000029643	rps6 (ENSORLG00000006304)	ENSORLG00000006290	SMU1 (ENSORLG00000006283)	dnaja1 (ENSORLG00000006260)	aptx (ENSORLG00000006237)	ENSORLG00000006212	sparcl1 (ENSORLG00000006207) ##22	odam (ENSORLG00000006190)	scpp5 (ENSORLG00000019321)	cnga1a (ENSORLG00000024168)	tacr3a (ENSORLG00000006145)	bdh2 (ENSORLG00000006131)	ENSORLG00000025365	ENSORLG00000023021	bdh2 (ENSORLG00000025911)	ENSORLG00000006118	cisd2 (ENSORLG00000006106)	SUCLG1 (ENSORLG00000006097)	LRRTM1 (ENSORLG00000024732)	ctnna2 (ENSORLG00000026159)	ADRA1D (ENSORLG00000006056)	ENSORLG00000019804
Chinese medaka	MODERN SPECIES	1094	pdcd4a (ENSOSIG00000012297)	mogs (ENSOSIG00000012288)	ENSOSIG00000012286	FBXO41 (ENSOSIG00000012285)	smox (ENSOSIG00000012284)	rnf24 (ENSOSIG00000012280)	ccdc86 (ENSOSIG00000012278)	glb1 (ENSOSIG00000012178)	ENSOSIG00000012173	rps6 (ENSOSIG00000012171)	ENSOSIG00000012169	SMU1 (ENSOSIG00000012161)	dnaja1 (ENSOSIG00000012156)	aptx (ENSOSIG00000012124)	ENSOSIG00000012120	sparcl1 (ENSOSIG00000012117) ##22	ENSOSIG00000012114
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Burton s mouthbrooder	MODERN SPECIES	780							ENSHBUG00000020876	ENSHBUG00000020917	ACER2 (ENSHBUG00000020940)	ENSHBUG00000020957	rps6 (ENSHBUG00000020973)	ENSHBUG00000021001	SMU1 (ENSHBUG00000021012)	dnaja1 (ENSHBUG00000021033)	aptx (ENSHBUG00000021058)	sparcl1 (ENSHBUG00000021096) ##22	ENSHBUG00000021108
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00550000075003	ENSGT00940000158131
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005022586	dhx15 (ENSMZEG00005022589)	SOD3 (ENSMZEG00005022596)	ccdc149b (ENSMZEG00005022597)	lgi2b (ENSMZEG00005022600)	C4orf54 (ENSMZEG00005022603)	mttp (ENSMZEG00005022604)	ENSMZEG00005022608	ACER2 (ENSMZEG00005022611)	ENSMZEG00005022612	rps6 (ENSMZEG00005022614)	ENSMZEG00005022616	SMU1 (ENSMZEG00005022617)	dnaja1 (ENSMZEG00005022620)	aptx (ENSMZEG00005022621)	sparcl1 (ENSMZEG00005022624) ##22	odam (ENSMZEG00005022628)	ENSMZEG00005022629	ENSMZEG00005022632	scpp5 (ENSMZEG00005022633)	cnga1a (ENSMZEG00005022635)	TACR3 (ENSMZEG00005022642)	bdh2 (ENSMZEG00005023604)	ENSMZEG00005023608	cisd2 (ENSMZEG00005023611)	suclg1 (ENSMZEG00005023612)	ctnna2 (ENSMZEG00005023618)	LRRTM1 (ENSMZEG00005023622)	ADRA1D (ENSMZEG00005023624)	ENSMZEG00005023626	ENSMZEG00005023627
Eastern happy	MODERN SPECIES	18	dhx15 (ENSACLG00000019362)	SOD3 (ENSACLG00000019351)	ccdc149b (ENSACLG00000019248)	lgi2b (ENSACLG00000019199)	ENSACLG00000019187	ENSACLG00000019175	mttp (ENSACLG00000019157)	ENSACLG00000019117	ENSACLG00000019110	ACER2 (ENSACLG00000019085)	rps6 (ENSACLG00000019061)	ENSACLG00000018986	SMU1 (ENSACLG00000018944)	dnaja1 (ENSACLG00000018913)	aptx (ENSACLG00000018887)	sparcl1 (ENSACLG00000018827) ##22	odam (ENSACLG00000018796)	ENSACLG00000018781	scpp5 (ENSACLG00000018756)	cnga1a (ENSACLG00000018687)	TACR3 (ENSACLG00000018656)	bdh2 (ENSACLG00000018576)	ENSACLG00000018482	cisd2 (ENSACLG00000018463)	suclg1 (ENSACLG00000018417)	ENSACLG00000018404	ENSACLG00000018383	ENSACLG00000018373	ENSACLG00000018360	LRRTM1 (ENSACLG00000018353)	ctnna2 (ENSACLG00000018180)
P. nyererei	MODERN SPECIES	317	dhx15 (ENSPNYG00000008089)	SOD3 (ENSPNYG00000008074)	ccdc149b (ENSPNYG00000008026)	ENSPNYG00000007962	lgi2b (ENSPNYG00000007946)	C4orf54 (ENSPNYG00000007937)	mttp (ENSPNYG00000007889)	ENSPNYG00000007862	ACER2 (ENSPNYG00000007836)	ENSPNYG00000007815	rps6 (ENSPNYG00000007790)	ENSPNYG00000007765	SMU1 (ENSPNYG00000007730)	dnaja1 (ENSPNYG00000007699)	aptx (ENSPNYG00000007675)	sparcl1 (ENSPNYG00000007638) ##22	ENSPNYG00000007605
Lyretail cichlid	MODERN SPECIES	301	ENSNBRG00000013806	dhx15 (ENSNBRG00000013821)	SOD3 (ENSNBRG00000013879)	ccdc149b (ENSNBRG00000013887)	lgi2b (ENSNBRG00000013916)	ENSNBRG00000013939	mttp (ENSNBRG00000013964)	tspan5b (ENSNBRG00000013995)	ACER2 (ENSNBRG00000014021)	ENSNBRG00000014038	rps6 (ENSNBRG00000014048)	ENSNBRG00000014065	SMU1 (ENSNBRG00000014101)	dnaja1 (ENSNBRG00000014175)	aptx (ENSNBRG00000014199)	sparcl1 (ENSNBRG00000014220) ##22	odam (ENSNBRG00000014244)	ENSNBRG00000014259	ENSNBRG00000014273	ENSNBRG00000014281	scpp5 (ENSNBRG00000014290)	cnga1a (ENSNBRG00000014310)	TACR3 (ENSNBRG00000014315)	bdh2 (ENSNBRG00000014330)	ENSNBRG00000014347	cisd2 (ENSNBRG00000014387)	suclg1 (ENSNBRG00000014398)	ctnna2 (ENSNBRG00000014418)	LRRTM1 (ENSNBRG00000014476)	ADRA1D (ENSNBRG00000014484)	ENSNBRG00000014496
Nile tilapia	MODERN SPECIES	18	ENSONIG00000017614	slc22a7b.1 (ENSONIG00000017616)	dhx15 (ENSONIG00000031154)	dhx15 (ENSONIG00000014504)	SOD3 (ENSONIG00000014507)	ccdc149b (ENSONIG00000036211)	LGI2 (ENSONIG00000014508)	ENSONIG00000029346	tspan5b (ENSONIG00000019859)	ACER2 (ENSONIG00000014526)	rps6 (ENSONIG00000039034)	ENSONIG00000014533	SMU1 (ENSONIG00000014535)	dnaja1 (ENSONIG00000037453)	aptx (ENSONIG00000014541)	sparcl1 (ENSONIG00000014544) ##22	odam (ENSONIG00000014550)	scpp5 (ENSONIG00000014557)	cnga1a (ENSONIG00000014559)	tacr3a (ENSONIG00000039363)	bdh2 (ENSONIG00000014564)	ENSONIG00000034335	cisd2 (ENSONIG00000041801)	suclg1 (ENSONIG00000014566)	ENSONIG00000040364	ctnna2 (ENSONIG00000014573)	LRRTM1 (ENSONIG00000020971)	ADRA1D (ENSONIG00000014583)	ENSONIG00000014584	mettl14 (ENSONIG00000014586)	PRSS12 (ENSONIG00000014590)
Midas cichlid	MODERN SPECIES	122		dhx15 (ENSACIG00000002385)	SOD3 (ENSACIG00000002372)	ccdc149b (ENSACIG00000002323)	lgi2b (ENSACIG00000002304)	ENSACIG00000002294	mttp (ENSACIG00000002260)	tspan5b (ENSACIG00000002239)	ACER2 (ENSACIG00000002224)	ENSACIG00000002217	rps6 (ENSACIG00000002210)	ENSACIG00000002199	SMU1 (ENSACIG00000002076)	dnaja1 (ENSACIG00000002055)	aptx (ENSACIG00000002035)	ENSACIG00000002013 ##22	odam (ENSACIG00000001992)	ENSACIG00000001984	scpp5 (ENSACIG00000001958)	cnga1a (ENSACIG00000001936)	TACR3 (ENSACIG00000001663)	bdh2 (ENSACIG00000001616)	ENSACIG00000001577	cisd2 (ENSACIG00000001566)	suclg1 (ENSACIG00000001544)	LRRTM1 (ENSACIG00000001535)	ctnna2 (ENSACIG00000001489)	ADRA1D (ENSACIG00000001471)	ENSACIG00000001446
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000177191	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00940000164993.h	ENSGT01030000234558.C.p	ENSGT00940000156012	ENSGT00940000155854.b.a.a	ENSGT00940000166091	ENSGT00950000182920.b.a.a	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00730000112195	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000177159.c.a.a.a	ENSGT00940000172773
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000154922.b.v.a	ENSGT00940000154922.b.u.b	ENSGT00940000155800.a.b	ENSGT00940000162224	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00730000111645.b	ENSGT00390000011412	ENSGT00940000155429.a.b	ENSGT00730000110920.b.a.b	ENSGT00390000009819.a.a	ENSGT00940000169889	ENSGT00940000155007.n.b	ENSGT00940000153558	ENSGT00940000156806	ENSGT00510000046787.e.a ##22	ENSGT00400000023138	ENSGT00940000177216	ENSGT00390000005736	ENSGT00940000156074.a.b	ENSGT00940000153745.b.e.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000172773	ENSGT00940000177159.c.a.b
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000016697	ENSAPEG00000016761	dhx15 (ENSAPEG00000016808)	SOD3 (ENSAPEG00000016865)	ccdc149b (ENSAPEG00000016870)	lgi2b (ENSAPEG00000016900)	C4orf54 (ENSAPEG00000016922)	mttp (ENSAPEG00000016933)	tspan5b (ENSAPEG00000016992)	ACER2 (ENSAPEG00000017032)	rps6 (ENSAPEG00000017080)	ENSAPEG00000017099	SMU1 (ENSAPEG00000017118)	dnaja1 (ENSAPEG00000017232)	aptx (ENSAPEG00000017253)	sparcl1 (ENSAPEG00000017290) ##22	odam (ENSAPEG00000017333)	ENSAPEG00000017366	scpp5 (ENSAPEG00000017382)	cnga1a (ENSAPEG00000017400)	TACR3 (ENSAPEG00000017414)	bdh2 (ENSAPEG00000017429)	ENSAPEG00000017479	cisd2 (ENSAPEG00000017513)	suclg1 (ENSAPEG00000017532)	ctnna2 (ENSAPEG00000017594)	LRRTM1 (ENSAPEG00000017639)	ADRA1D (ENSAPEG00000017644)	ENSAPEG00000017653	ENSAPEG00000017674	ENSAPEG00000017686
Clown anemonefish	MODERN SPECIES	1832										ACER2 (ENSAOCG00000010071)	rps6 (ENSAOCG00000010086)	ENSAOCG00000010098	SMU1 (ENSAOCG00000010141)	dnaja1 (ENSAOCG00000000630)	aptx (ENSAOCG00000000634)	sparcl1 (ENSAOCG00000010318) ##22	ENSAOCG00000010370	ENSAOCG00000010380	ENSAOCG00000010393
Spiny chromis	MODERN SPECIES	1284							mttp (ENSAPOG00000008574)	ENSAPOG00000008617	ACER2 (ENSAPOG00000008651)	rps6 (ENSAPOG00000008677)	ENSAPOG00000008704	SMU1 (ENSAPOG00000000855)	dnaja1 (ENSAPOG00000008755)	aptx (ENSAPOG00000008785)	ENSAPOG00000008808	sparcl1 (ENSAPOG00000008850) ##22	ENSAPOG00000000246	ENSAPOG00000008890
Bicolor damselfish	MODERN SPECIES	247	dhx15 (ENSSPAG00000020952)	SOD3 (ENSSPAG00000020943)	ccdc149b (ENSSPAG00000020919)	lgi2b (ENSSPAG00000020896)	C4orf54 (ENSSPAG00000020894)	mttp (ENSSPAG00000020603)	tspan5b (ENSSPAG00000020562)	ACER2 (ENSSPAG00000020540)	ENSSPAG00000020534	rps6 (ENSSPAG00000020516)	ENSSPAG00000020497	SMU1 (ENSSPAG00000020431)	dnaja1 (ENSSPAG00000020402)	aptx (ENSSPAG00000020373)	ENSSPAG00000020363	sparcl1 (ENSSPAG00000020274) ##22	ENSSPAG00000020251
Tiger tail seahorse	MODERN SPECIES	257	dhx15 (ENSHCOG00000018653)	SOD3 (ENSHCOG00000018629)	ccdc149b (ENSHCOG00000018623)	lgi2b (ENSHCOG00000018588)	ENSHCOG00000018516	mttp (ENSHCOG00000018507)	ENSHCOG00000018463	ACER2 (ENSHCOG00000018420)	rps6 (ENSHCOG00000018405)	ENSHCOG00000018386	ENSHCOG00000018358	SMU1 (ENSHCOG00000018344)	dnaja1 (ENSHCOG00000000486)	aptx (ENSHCOG00000018216)	ENSHCOG00000018191	sparcl1 (ENSHCOG00000018185) ##22	ENSHCOG00000018166	cnga1a (ENSHCOG00000018140)	ENSHCOG00000018082	bdh2 (ENSHCOG00000018061)	ENSHCOG00000018029	cisd2 (ENSHCOG00000017967)	suclg1 (ENSHCOG00000017954)	ctnna2 (ENSHCOG00000017925)	LRRTM1 (ENSHCOG00000017874)	ADRA1D (ENSHCOG00000017866)	ENSHCOG00000017850	mettl14 (ENSHCOG00000017822)	PRSS12 (ENSHCOG00000017771)	ENSHCOG00000017731	ENSHCOG00000017691
Pinecone sodierfish	MODERN SPECIES		dhx15 (ENSMMDG00005020969)	SOD3 (ENSMMDG00005021031)	ccdc149b (ENSMMDG00005021035)	lgi2b (ENSMMDG00005021041)	C4orf54 (ENSMMDG00005021059)	mttp (ENSMMDG00005000076)	tspan5b (ENSMMDG00005000077)	ACER2 (ENSMMDG00005000078)	rps6 (ENSMMDG00005000085)	ENSMMDG00005000096	ENSMMDG00005000100	SMU1 (ENSMMDG00005000107)	dnaja1 (ENSMMDG00005000127)	aptx (ENSMMDG00005000160)	ENSMMDG00005000171	sparcl1 (ENSMMDG00005000193) ##22	ENSMMDG00005000265	odam (ENSMMDG00005000273)	ENSMMDG00005000285	scpp5 (ENSMMDG00005000291)	cnga1a (ENSMMDG00005000299)	TACR3 (ENSMMDG00005000329)	bdh2 (ENSMMDG00005000449)	ENSMMDG00005000470	cisd2 (ENSMMDG00005000504)	suclg1 (ENSMMDG00005000516)	ENSMMDG00005000563	ENSMMDG00005000568	ctnna2 (ENSMMDG00005000625)	LRRTM1 (ENSMMDG00005000996)	CTNNA2 (ENSMMDG00005001000)
Cod	MODERN SPECIES	16	ENSGMOG00000012480	ENSGMOG00000012478	DHX15 (ENSGMOG00000012481)	SOD3 (ENSGMOG00000012483)	CCDC149 (ENSGMOG00000012486)	LGI2 (ENSGMOG00000012488)	ENSGMOG00000030284	ENSGMOG00000012490	ENSGMOG00000000895	SMU1 (ENSGMOG00000012501)	ENSGMOG00000012497	ENSGMOG00000022834	DNAJA1 (ENSGMOG00000012503)	APTX (ENSGMOG00000012505)	ENSGMOG00000031353	ENSGMOG00000012509 ##22	odam (ENSGMOG00000036717)	scpp5 (ENSGMOG00000033377)	cnga1a (ENSGMOG00000007969)	ENSGMOG00000023792	bdh2 (ENSGMOG00000009338)	ENSGMOG00000009344	cisd2 (ENSGMOG00000009357)	ENSGMOG00000030120	ctnna2 (ENSGMOG00000019375)	ENSGMOG00000007136	ENSGMOG00000020001	ENSGMOG00000020002	ENSGMOG00000025176	ENSGMOG00000024829	ENSGMOG00000028689
Protacanthopterygii	ANCESTRAL SPECIES	40	ENSGT00940000155512.q.a	ENSGT00940000153745.b.e.b	ENSGT00940000156074.a.b	ENSGT00940000155521.b	ENSGT00940000164636	ENSGT00940000156432.a	ENSGT00940000156323.c.a	ENSGT00530000063614.a.b	ENSGT00940000175947	ENSGT00490000043413	ENSGT00940000155905.a	ENSGT00940000155128.a.b.a.b	ENSGT00950000183040.A.b.g	ENSGT00390000000973.a.b	ENSGT00940000164052	ENSGT00510000046787.e.a ##22	ENSGT00940000182397	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b	ENSGT00950000183027.b.a ##37	ENSGT00940000156337.d	ENSGT00800000124172.j	ENSGT00940000157483	ENSGT00940000158285	ENSGT00730000111184	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000010356	ENSGT00940000154622.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	159	ENSGT00530000063614.a.b.o	ENSGT00490000043413	ENSGT00940000155905.a.g.b	ENSGT00940000155128.a.b.a.b.c	ENSGT00950000183040.A.b.g.a	ENSGT00390000000973.a.b.h.a	ENSGT00510000046908.a.b.b ##30	ENSGT00940000155905.a.g.a	ENSGT00940000155128.a.b.a.b.d	ENSGT00950000183040.A.b.g.b	ENSGT00390000000973.a.b.h.b	ENSGT00510000046908.a.b.a ##30	ENSGT00390000012242.b.a	ENSGT00510000046787.e.a.h ##22	ENSGT00940000182397.b	ENSGT00510000046787.e.a.g ##22	ENSGT00940000182397.a	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b.a	ENSGT00950000183027.b.a.b ##37	ENSGT00940000156337.d.f	ENSGT00800000124172.j.b	ENSGT00940000157483.e	ENSGT00940000158285.e	ENSGT00730000111184	ENSGT00950000182866.D.d.a.c.a.i.a.b.b	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000010356
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT00940000156660.c	ENSGT00390000013285.g.f	ENSGT00940000153745.b.e.b	ENSGT00940000156074.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000164636	ENSGT00940000156432.a.d	ENSGT00530000063614.a.b.p	ENSGT00490000043413.t	ENSGT00940000155905.a.g.b	ENSGT00940000155128.a.b.a.b.c	ENSGT00950000183040.A.b.g.a	ENSGT00390000000973.a.b.h.a	ENSGT00510000046908.a.b.b ##30	ENSGT00390000012242.b.a.c	ENSGT00510000046787.e.a.g ##22	ENSGT00940000182397.a	ENSGT00990000208074.c.b	ENSGT00400000023138.a	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b.a	ENSGT00950000183027.b.a.b ##37	ENSGT00940000156337.d.e.b	ENSGT00800000124172.j.b	ENSGT00940000157483.e	ENSGT00940000158285.e	ENSGT00730000111184	ENSGT00950000182866.D.d.a.c.a.i.a.b.b	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000010356
Oncorhynchus	ANCESTRAL SPECIES	52	ENSGT00390000013285.g.f	ENSGT00940000153745.b.e.b	ENSGT00940000156074.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000164636	ENSGT00940000156432.a.d	ENSGT00530000063614.a.b.p	ENSGT00490000043413.t	ENSGT00940000155905.a.g.b	ENSGT00940000155128.a.b.a.b.c	ENSGT00950000183040.A.b.g.a	ENSGT00390000000973.a.b.h.a	ENSGT00510000046908.a.b.b ##30	ENSGT00940000164052.a	ENSGT00390000012242.b.a.c	ENSGT00510000046787.e.a.g ##22	ENSGT00940000182397.a	ENSGT00990000208074.c.b	ENSGT00400000023138.a	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b.a	ENSGT00950000183027.b.a.b ##37	ENSGT00940000156337.d.e.b	ENSGT00800000124172.j.b	ENSGT00940000157483.e	ENSGT00940000158285.e	ENSGT00730000111184	ENSGT00950000182866.D.d.a.c.a.i.a.b.b	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000010356
Oncorhynchus_a	ANCESTRAL SPECIES	52	ENSGT00940000156660.c	ENSGT00390000013285.g.f	ENSGT00940000153745.b.e.b	ENSGT00940000156074.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000164636	ENSGT00940000156432.a.d	ENSGT00530000063614.a.b.p	ENSGT00490000043413.t	ENSGT00940000155905.a.g.b	ENSGT00940000155128.a.b.a.b.c	ENSGT00950000183040.A.b.g.a	ENSGT00390000000973.a.b.h.a	ENSGT00510000046908.a.b.b ##30	ENSGT00390000012242.b.a.c	ENSGT00510000046787.e.a.g ##22	ENSGT00940000182397.a	ENSGT00990000208074.c.b	ENSGT00400000023138.a	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b.a	ENSGT00950000183027.b.a.b ##37	ENSGT00940000156337.d.e.b	ENSGT00800000124172.j.b	ENSGT00940000157483.e	ENSGT00940000158285.e	ENSGT00730000111184	ENSGT00950000182866.D.d.a.c.a.i.a.b.b	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000010356
Coho salmon	MODERN SPECIES	3	cisd2 (ENSOKIG00005019887)	ENSOKIG00005019799	TACR3 (ENSOKIG00005019778)	cnga1a (ENSOKIG00005019763)	ENSOKIG00005019756	ENSOKIG00005019686	sfrp2 (ENSOKIG00005019671)	TMEM131L (ENSOKIG00005019636)	mnd1 (ENSOKIG00005019609)	trim2a (ENSOKIG00005018765)	FHDC1 (ENSOKIG00005018669)	arfip1 (ENSOKIG00005018642)	FAM193A (ENSOKIG00005018499)	ENSOKIG00005018480	CGA (ENSOKIG00005018462)	ENSOKIG00005018452 ##22	ENSOKIG00005018444	ENSOKIG00005028088	ENSOKIG00005028081	ENSOKIG00005028056	SYNPO2 (ENSOKIG00005027993)	myoz2b (ENSOKIG00005027977) ##37	USP53 (ENSOKIG00005027954)	fabp2 (ENSOKIG00005027933)	gucy1b1 (ENSOKIG00005027780)	gucy1a1 (ENSOKIG00005027757)	map9 (ENSOKIG00005027737)	ENSOKIG00005027726	NXPE3 (ENSOKIG00005027715)	ufsp2 (ENSOKIG00005027584)	ankrd37 (ENSOKIG00005027570)
Chinook salmon	MODERN SPECIES	27	suclg1 (ENSOTSG00005019261)	cisd2 (ENSOTSG00005019259)	ENSOTSG00005019257	TACR3 (ENSOTSG00005019256)	cnga1a (ENSOTSG00005019254)	ENSOTSG00005019251	sfrp2 (ENSOTSG00005019249)	TMEM131L (ENSOTSG00005019247)	mnd1 (ENSOTSG00005019240)	trim2a (ENSOTSG00005019185)	FHDC1 (ENSOTSG00005019184)	arfip1 (ENSOTSG00005019183)	FAM193A (ENSOTSG00005018985)	TNIP2 (ENSOTSG00005018984) ##30	CGA (ENSOTSG00005018982)	sparcl1 (ENSOTSG00005018508) ##22	scpp9 (ENSOTSG00005018502)	ENSOTSG00005018499	scpp5 (ENSOTSG00005018483)	SYNPO2 (ENSOTSG00005018471)	myoz2b (ENSOTSG00005018465) ##37	USP53 (ENSOTSG00005018458)	fabp2 (ENSOTSG00005018455)	gucy1b1 (ENSOTSG00005018361)	gucy1a1 (ENSOTSG00005018356)	map9 (ENSOTSG00005018353)	nxpe3 (ENSOTSG00005018349)	ufsp2 (ENSOTSG00005018344)	ankrd37 (ENSOTSG00005018341)	ENSOTSG00005018339	slc25a4 (ENSOTSG00005018337)
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000065534	cnga1a (ENSOMYG00000004893)	ENSOMYG00000004874	ENSOMYG00000004842	ENSOMYG00000072787	TMEM131L (ENSOMYG00000004786)	MND1 (ENSOMYG00000004686)	trim2a (ENSOMYG00000004571)	FHDC1 (ENSOMYG00000004388)	ENSOMYG00000062302	arfip1 (ENSOMYG00000004341)	ENSOMYG00000004109	ENSOMYG00000003746	GTH alpha (ENSOMYG00000003650)	ENSOMYG00000056495	ENSOMYG00000003503 ##22	ENSOMYG00000063427	ENSOMYG00000003368	ENSOMYG00000070271	ENSOMYG00000003226	SYNPO2 (ENSOMYG00000041187)	ENSOMYG00000071716	myoz2b (ENSOMYG00000041179) ##37	USP53 (ENSOMYG00000041173)	ENSOMYG00000075813	fabp2 (ENSOMYG00000041163)	ENSOMYG00000063280	gucy1b1 (ENSOMYG00000041152)	gucy1a1 (ENSOMYG00000041145)	map9 (ENSOMYG00000041140)	ENSOMYG00000050587
Salmo	ANCESTRAL SPECIES	59	ENSGT00940000156660.c	ENSGT00390000013285.g.f	ENSGT00940000153745.b.e.b	ENSGT00940000156074.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.b.b.a.b.b	ENSGT00940000164636	ENSGT00940000156432.a.d	ENSGT00530000063614.a.b.p	ENSGT00490000043413.t	ENSGT00940000155905.a.g.b	ENSGT00940000155128.a.b.a.b.c	ENSGT00950000183040.A.b.g.a	ENSGT00390000000973.a.b.h.a	ENSGT00510000046908.a.b.b ##30	ENSGT00390000012242.b.a.c	ENSGT00510000046787.e.a.g ##22	ENSGT00940000182397.a	ENSGT00990000208074.c.b	ENSGT00400000023138.a	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b.a	ENSGT00950000183027.b.a.b ##37	ENSGT00940000156337.d.f	ENSGT00800000124172.j.b	ENSGT00940000157483.e	ENSGT00940000158285.e	ENSGT00730000111184	ENSGT00950000182866.D.d.a.c.a.i.a.b.b	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00390000010356
River trout	MODERN SPECIES	33	ENSSTUG00000017266	TACR3 (ENSSTUG00000017330)	cnga1a (ENSSTUG00000017357)	ENSSTUG00000017380	ENSSTUG00000017384	sfrp2 (ENSSTUG00000017443)	TMEM131L (ENSSTUG00000017449)	mnd1 (ENSSTUG00000017491)	ENSSTUG00000017517	trim2a (ENSSTUG00000017539)	FHDC1 (ENSSTUG00000018000)	arfip1 (ENSSTUG00000018024)	FAM193A (ENSSTUG00000018064)	ENSSTUG00000018340 ##30	CGA (ENSSTUG00000018376)	sparcl1 (ENSSTUG00000018389) ##22	ENSSTUG00000018407	SYNPO2 (ENSSTUG00000018412)	myoz2b (ENSSTUG00000018459) ##37	ENSSTUG00000018474	fabp2 (ENSSTUG00000018492)	gucy1b1 (ENSSTUG00000018498)	gucy1a1 (ENSSTUG00000018547)	map9 (ENSSTUG00000018554)	ENSSTUG00000018587	nxpe3 (ENSSTUG00000018605)	ufsp2 (ENSSTUG00000018625)	ankrd37 (ENSSTUG00000018841)	cfap97 (ENSSTUG00000018844)	slc25a4 (ENSSTUG00000018852)	helt (ENSSTUG00000018870)
Atlantic salmon	MODERN SPECIES	23	cisd2a (ENSSSAG00000004742)	ENSSSAG00000008184	cnga1a (ENSSSAG00000004920)	ENSSSAG00000104718	ENSSSAG00000099911	ENSSSAG00000004954	ENSSSAG00000099124	ENSSSAG00000005054	mnd1 (ENSSSAG00000005065)	trim2a (ENSSSAG00000008703)	FHDC1 (ENSSSAG00000005268)	arfip1 (ENSSSAG00000005299)	ENSSSAG00000005348	TNIP2 (ENSSSAG00000005559)	ENSSSAG00000005565	ENSSSAG00000005576 ##22	ENSSSAG00000005598	scpp9 (ENSSSAG00000005609)	ENSSSAG00000086248	scpp5 (ENSSSAG00000098895)	scpp5 (ENSSSAG00000005671)	scpp5 (ENSSSAG00000005652)	ENSSSAG00000005679	MYOZ2 (ENSSSAG00000005695) ##37	gucy1b1 (ENSSSAG00000005775)	ENSSSAG00000005859	map9 (ENSSSAG00000005872)	ENSSSAG00000005880	ufsp2 (ENSSSAG00000005892)	ankrd37 (ENSSSAG00000120002)	cfap97 (ENSSSAG00000005936)
Huchen	MODERN SPECIES	1543												FAM193A (ENSHHUG00000034085)	ENSHHUG00000034087	ENSHHUG00000034092 ##30	CGA (ENSHHUG00000034096)	sparcl1 (ENSHHUG00000034102) ##22	ENSHHUG00000034110	ENSHHUG00000034123
Salmoninae	ANCESTRAL SPECIES	159	ENSGT00940000156432.a.c	ENSGT00940000156323.c.a	ENSGT00530000063614.a.b.o	ENSGT00490000043413	ENSGT00940000155905.a.g.b	ENSGT00940000155128.a.b.a.b.c	ENSGT00950000183040.A.b.g.a	ENSGT00390000000973.a.b.h.a	ENSGT00510000046908.a.b.b ##30	ENSGT00940000155905.a.g.a	ENSGT00940000155128.a.b.a.b.d	ENSGT00950000183040.A.b.g.b	ENSGT00390000000973.a.b.h.b	ENSGT00510000046908.a.b.a ##30	ENSGT00390000012242.b.a	ENSGT00510000046787.e.a.h ##22	ENSGT00940000182397.b	ENSGT00510000046787.e.a.g ##22	ENSGT00940000182397.a	ENSGT00990000208074	ENSGT00400000023138	ENSGT00390000005736	ENSGT00950000183054.a.a.a.b.a	ENSGT00950000183027.b.a.b ##37	ENSGT00940000156337.d.f	ENSGT00800000124172.j.b	ENSGT00940000157483.e	ENSGT00940000158285.e	ENSGT00730000111184	ENSGT00950000182866.D.d.a.c.a.i.a.b.b	ENSGT00940000157115
Salmoninae_a	ANCESTRAL SPECIES	54	ENSGT01030000234543.A.a.g.a	ENSGT00940000156351.l.b	ENSGT00940000156660.d	ENSGT00390000013285.g.e	ENSGT00940000155512.q.a	ENSGT00940000156432.a.c	ENSGT00940000156323.c.a	ENSGT00530000063614.a.b.o	ENSGT00490000043413.s	ENSGT00940000155905.a.g.a	ENSGT00940000155128.a.b.a.b.d	ENSGT00950000183040.A.b.g.b	ENSGT00390000000973.a.b.h.b	ENSGT00510000046908.a.b.a ##30	ENSGT00390000012242.b.a.d	ENSGT00510000046787.e.a.h ##22	ENSGT00400000023138.b	ENSGT00950000183054.a.a.a.b.b	ENSGT00950000183027.b.a.a ##37	ENSGT00940000156337.d.e.a	ENSGT00800000124172.j.a	ENSGT00940000157483.f	ENSGT00940000158285.f	ENSGT00940000154622.a.a.q	ENSGT00940000160388.a	ENSGT00940000154508.a.a.s.a.c	ENSGT00940000153232.a.b.a.f	ENSGT00520000055589.d.a.b.e	ENSGT00940000155800.a.b.d.a	ENSGT00940000155800.a.b.d.b	ENSGT00940000162224
Salmo	ANCESTRAL SPECIES	82	ENSGT00940000156351.l.b	ENSGT00940000156660.d	ENSGT00390000013285.g.e	ENSGT00940000156721.x	ENSGT00940000155512.q.a	ENSGT00940000156432.a.c	ENSGT00940000156323.c.a	ENSGT00530000063614.a.b.o	ENSGT00490000043413.s	ENSGT00940000155905.a.g.a	ENSGT00940000155128.a.b.a.b.d	ENSGT00950000183040.A.b.g.b	ENSGT00390000000973.a.b.h.b	ENSGT00510000046908.a.b.a ##30	ENSGT00390000012242.b.a.d	ENSGT00510000046787.e.a.h ##22	ENSGT00940000182397.b	ENSGT00990000208074.d	ENSGT00400000023138.b	ENSGT00950000183054.a.a.a.b.b	ENSGT00950000183027.b.a.a ##37	ENSGT00800000124172.j.a	ENSGT00940000156337.d.e.a	ENSGT00940000157483.f	ENSGT00940000158285.f	ENSGT00940000154622.a.a.q	ENSGT00940000160388.a	ENSGT00940000154508.a.a.s.a.c	ENSGT00940000153232.a.b.a.f	ENSGT00520000055589.d.a.b.e	ENSGT00730000111645.b.b
Atlantic salmon	MODERN SPECIES	27	suclg1 (ENSSSAG00000008139)	ENSSSAG00000103581	ENSSSAG00000008170	ENSSSAG00000004771	ENSSSAG00000008411	ENSSSAG00000008519	ENSSSAG00000093980	TMEM131L (ENSSSAG00000008551)	MND1 (ENSSSAG00000098498)	trim2a (ENSSSAG00000005112)	FHDC1 (ENSSSAG00000009410)	arfip1 (ENSSSAG00000009445)	ENSSSAG00000009541	ENSSSAG00000015561 ##30	ENSSSAG00000096347	sparcl1 (ENSSSAG00000015611) ##22	ENSSSAG00000015621	ENSSSAG00000015632	ENSSSAG00000015643	SYNPO2 (ENSSSAG00000015661)	myoz2b (ENSSSAG00000015710) ##37	fabp2 (ENSSSAG00000015783)	USP53 (ENSSSAG00000015750)	ENSSSAG00000111189	ENSSSAG00000114147	ENSSSAG00000015934	gucy1a1 (ENSSSAG00000039183)	slc25a4 (ENSSSAG00000039228)	HELT (ENSSSAG00000039295)	acsl1a (ENSSSAG00000039945)	CASP3 (ENSSSAG00000057265)
River trout	MODERN SPECIES	2	suclg1 (ENSSTUG00000046010)	cisd2 (ENSSTUG00000046004)	ENSSTUG00000045937	bdh2 (ENSSTUG00000045915)	ENSSTUG00000045871	sfrp2 (ENSSTUG00000045860)	ENSSTUG00000045853	TMEM131L (ENSSTUG00000045824)	mnd1 (ENSSTUG00000045811)	trim2a (ENSSTUG00000045373)	FHDC1 (ENSSTUG00000045308)	arfip1 (ENSSTUG00000045286)	FAM193A (ENSSTUG00000045185)	TNIP2 (ENSSTUG00000045168) ##30	CGA (ENSSTUG00000045157)	sparcl1 (ENSSTUG00000044989) ##22	ENSSTUG00000044965	ENSSTUG00000044949	ENSSTUG00000044932	ENSSTUG00000044927	myoz2b (ENSSTUG00000044888) ##37	USP53 (ENSSTUG00000044867)	gucy1b1 (ENSSTUG00000044675)	gucy1a1 (ENSSTUG00000044656)	slc25a4 (ENSSTUG00000044649)	helt (ENSSTUG00000044635)	acsl1a (ENSSTUG00000036598)	ENSSTUG00000036427	casp3a (ENSSTUG00000036417)	ENSSTUG00000036414	STOX2 (ENSSTUG00000036408)
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000153986.a.d	ENSGT00940000157933.g	ENSGT00390000013481.c.a.d.a	ENSGT00390000002030	ENSGT00940000166202.g	ENSGT00990000210155	ENSGT00390000004208.i.a.b.a	ENSGT00940000158876.i.a	ENSGT00940000154859.fb	ENSGT00990000210199	ENSGT00940000155128.a.b.a.b.d	ENSGT00950000183040.A.b.g.b	ENSGT00390000000973.a.b.h.b	ENSGT00510000046908.a.b.a ##30	ENSGT00390000012242.b.a.d	ENSGT00510000046787.e.a.h ##22	ENSGT00990000208074.c.a	ENSGT00400000023138.b	ENSGT00950000183054.a.a.a.b.b	ENSGT00950000183027.b.a.a ##37	ENSGT00940000156337.d.e.a	ENSGT00800000124172.j.a	ENSGT00940000157483.f	ENSGT00940000158285.f	ENSGT00940000154622.a.a.q	ENSGT00940000160388.a	ENSGT00940000154508.a.a.s.a.c	ENSGT00940000153232.a.b.a.f	ENSGT00520000055589.d.a.b.e	ENSGT00940000155800.a.b.d.a	ENSGT00940000172047.a
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000153986.a.d	ENSGT00940000157933.g	ENSGT00390000013481.c.a.d.a	ENSGT00390000002030	ENSGT00940000166202.g	ENSGT00990000210155	ENSGT00390000004208.i.a.b.a	ENSGT00940000158876.i.a	ENSGT00940000154859.fb	ENSGT00990000210199	ENSGT00940000155128.a.b.a.b.d	ENSGT00950000183040.A.b.g.b	ENSGT00390000000973.a.b.h.b	ENSGT00510000046908.a.b.a ##30	ENSGT00390000012242.b.a.d	ENSGT00510000046787.e.a.h ##22	ENSGT00990000208074.c.a	ENSGT00400000023138.b	ENSGT00950000183054.a.a.a.b.b	ENSGT00950000183027.b.a.a ##37	ENSGT00940000156337.d.e.a	ENSGT00800000124172.j.a	ENSGT00940000157483.f	ENSGT00940000158285.f	ENSGT00940000154622.a.a.q	ENSGT00940000160388.a	ENSGT00940000154508.a.a.s.a.c	ENSGT00940000153232.a.b.a.f	ENSGT00520000055589.d.a.b.e	ENSGT00940000155800.a.b.d.a	ENSGT00940000172047.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	66	rtknb (ENSOTSG00005037106)	ENSOTSG00005037108	ENSOTSG00005037109	ENSOTSG00005037111	ENSOTSG00005037112	ENSOTSG00005037113	babam2 (ENSOTSG00005037115)	fosl2 (ENSOTSG00005037116)	styx (ENSOTSG00005037117)	ENSOTSG00005037146	FHDC1 (ENSOTSG00005037147)	arfip1 (ENSOTSG00005037150)	FAM193A (ENSOTSG00005037151)	ENSOTSG00005037161 ##30	CGA (ENSOTSG00005037163)	sparcl1 (ENSOTSG00005037165) ##22	ENSOTSG00005037166	ENSOTSG00005037167	ENSOTSG00005037168	myoz2b (ENSOTSG00005037170) ##37	USP53 (ENSOTSG00005037172)	fabp2 (ENSOTSG00005037173)	gucy1b1 (ENSOTSG00005037177)	slc25a4 (ENSOTSG00005037227)	helt (ENSOTSG00005037231)	acsl1a (ENSOTSG00005037275)	casp3a (ENSOTSG00005043795)	STOX2 (ENSOTSG00005043798)	dhx15 (ENSOTSG00005043802)	ENSOTSG00005043803	mttp (ENSOTSG00005043810)
Chinook salmon	MODERN SPECIES	2	gch1 (ENSOTSG00005010990)	wdhd1 (ENSOTSG00005010960)	ENSOTSG00005014489	ENSOTSG00005014488	ENSOTSG00005014486	rbks (ENSOTSG00005014485)	babam2 (ENSOTSG00005014484)	fosl2 (ENSOTSG00005014482)	styx (ENSOTSG00005014464)	ENSOTSG00005014459	FHDC1 (ENSOTSG00005014452)	arfip1 (ENSOTSG00005014449)	FAM193A (ENSOTSG00005014421)	ENSOTSG00005014418 ##30	CGA (ENSOTSG00005014417)	sparcl1 (ENSOTSG00005014416) ##22	ENSOTSG00005014415	ENSOTSG00005014413	ENSOTSG00005014412	myoz2b (ENSOTSG00005014409) ##37	ENSOTSG00005014405	fabp2 (ENSOTSG00005014401)	gucy1b1 (ENSOTSG00005014372)	gucy1a1 (ENSOTSG00005014365)	slc25a4 (ENSOTSG00005014364)	helt (ENSOTSG00005014362)	acsl1a (ENSOTSG00005007564)	casp3a (ENSOTSG00005007527)	STOX2 (ENSOTSG00005007526)	dhx15 (ENSOTSG00005007523)	ENSOTSG00005007521
Coho salmon	MODERN SPECIES	27	ENSOKIG00005038175	gpr137c (ENSOKIG00005038156)	SAMD4A (ENSOKIG00005038128)	gch1 (ENSOKIG00005038108)	wdhd1 (ENSOKIG00005037951)	socs4 (ENSOKIG00005037886)	rbks (ENSOKIG00005037840)	BABAM2 (ENSOKIG00005037690)	fosl2 (ENSOKIG00005037653)	STYX (ENSOKIG00005037525)	FHDC1 (ENSOKIG00005037495)	ENSOKIG00005037453	FAM193A (ENSOKIG00005037086)	ENSOKIG00005037030 ##30	CGA (ENSOKIG00005036956)	sparcl1 (ENSOKIG00005036912) ##22	ENSOKIG00005036899	ENSOKIG00005036871	myoz2b (ENSOKIG00005036847) ##37	USP53 (ENSOKIG00005036822)	fabp2 (ENSOKIG00005036808)	gucy1b1 (ENSOKIG00005036704)	gucy1a1 (ENSOKIG00005036689)	slc25a4 (ENSOKIG00005036661)	HELT (ENSOKIG00005036636)	acsl1a (ENSOKIG00005031438)	ENSOKIG00005031059	CASP3 (ENSOKIG00005031011)	STOX2 (ENSOKIG00005030999)	DHX15 (ENSOKIG00005030356)	ENSOKIG00005030281
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000064408	SAMD4A (ENSOMYG00000012050)	gch1 (ENSOMYG00000012083)	wdhd1 (ENSOMYG00000011988)	socs4 (ENSOMYG00000011911)	ENSOMYG00000009512	ENSOMYG00000009563	ENSOMYG00000009579	ENSOMYG00000009639	ENSOMYG00000068377	ENSOMYG00000009754	ENSOMYG00000009799	ENSOMYG00000009885	ENSOMYG00000010005	ENSOMYG00000060900	ENSOMYG00000010062 ##22	ENSOMYG00000010095	SYNPO2 (ENSOMYG00000010135)	myoz2b (ENSOMYG00000010157) ##37	ENSOMYG00000010182	fabp2 (ENSOMYG00000010191)	ENSOMYG00000069434	gucy1b1 (ENSOMYG00000010367)	gucy1a1 (ENSOMYG00000010457)	slc25a4 (ENSOMYG00000010464)	HELT (ENSOMYG00000010473)	acsl1a (ENSOMYG00000010854)	ENSOMYG00000068196	CASP3 (ENSOMYG00000013103)	ENSOMYG00000013087	ENSOMYG00000013159
Huchen	MODERN SPECIES	1627										zgc:195282 (ENSHHUG00000045948)	FHDC1 (ENSHHUG00000045950)	arfip1 (ENSHHUG00000045962)	FAM193A (ENSHHUG00000045973)	ENSHHUG00000046018 ##30	CGA (ENSHHUG00000046030)	sparcl1 (ENSHHUG00000046031) ##22	ENSHHUG00000046037	ENSHHUG00000046043	ENSHHUG00000046048	myoz2b (ENSHHUG00000046051) ##37	ENSHHUG00000046053	ENSHHUG00000046055	fabp2 (ENSHHUG00000046057)	gucy1b1 (ENSHHUG00000046063)	gucy1a1 (ENSHHUG00000046092)
Northern pike	MODERN SPECIES	24	ENSELUG00000003896	ENSELUG00000031973	cnga1a (ENSELUG00000003913)	ENSELUG00000025340	ENSELUG00000001628	sfrp2 (ENSELUG00000001439)	TMEM131L (ENSELUG00000004037)	ENSELUG00000034332	mnd1 (ENSELUG00000004076)	trim2a (ENSELUG00000004122)	FHDC1 (ENSELUG00000004162)	arfip1 (ENSELUG00000004198)	FAM193A (ENSELUG00000004310)	ENSELUG00000004362 ##30	ENSELUG00000030260	sparcl1 (ENSELUG00000004416) ##22	ENSELUG00000004446	ENSELUG00000028366	ENSELUG00000034076	ENSELUG00000026610	ENSELUG00000012910	SYNPO2 (ENSELUG00000004457)	myoz2 (ENSELUG00000029471) ##37	USP53 (ENSELUG00000004528)	fabp2 (ENSELUG00000032130)	gucy1b1 (ENSELUG00000004589)	gucy1a1 (ENSELUG00000004621)	acsl1a (ENSELUG00000000135)	helt (ENSELUG00000000136)	ENSELUG00000004756	slc25a4 (ENSELUG00000004766)
Osteoglossiformes	ANCESTRAL SPECIES	220	ENSGT00940000165059.A	ENSGT00940000158602	ENSGT00390000006915.d.j.a	ENSGT00940000158368.i	ENSGT00940000154593.a.b	ENSGT00390000009873	ENSGT00940000158356	ENSGT00940000160772.i	ENSGT00390000009191	ENSGT00940000154466	ENSGT00940000158105.i	ENSGT00940000155038.tc	ENSGT00390000000973.a.b.i	ENSGT00510000046908.a.b ##30	ENSGT00940000181360	ENSGT00510000046787.e.a ##22	ENSGT01000000220882	ENSGT00940000156074.a.b	ENSGT00940000153745.b	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a.e.a
Asian bonytongue	MODERN SPECIES	7	asb5b (ENSSFOG00015027571)	wdr17 (ENSSFOG00015020006)	GPM6A (ENSSFOG00015019961)	glra3 (ENSSFOG00015019945)	hpgd (ENSSFOG00015019878)	cep44 (ENSSFOG00015019847)	fbxo8 (ENSSFOG00015025727)	hand2 (ENSSFOG00015019807)	SCRG1 (ENSSFOG00015029537)	hmgb2a (ENSSFOG00015019784)	galnt7 (ENSSFOG00015019762)	galntl6 (ENSSFOG00015019733)	FAM193A (ENSSFOG00015019654)	TNIP2 (ENSSFOG00015019632) ##30	ENSSFOG00015024835	sparcl1 (ENSSFOG00015019600) ##22	ENSSFOG00015019590	cnga1a (ENSSFOG00015019582)	tacr3a (ENSSFOG00015025707)	bdh2 (ENSSFOG00015019240)	ENSSFOG00015019213	ENSSFOG00015030099	cisd2 (ENSSFOG00015019208)	suclg1 (ENSSFOG00015019188)	ctnna2 (ENSSFOG00015019134)	LRRTM1 (ENSSFOG00015019180)	ADRA1D (ENSSFOG00015019108)	ENSSFOG00015030470	ENSSFOG00015019059	smox (ENSSFOG00015019038)	RNF24 (ENSSFOG00015019018)
P. kingsleyae	MODERN SPECIES	6	asb5b (ENSPKIG00000009671)	wdr17 (ENSPKIG00000009737)	GPM6A (ENSPKIG00000009850)	glra3 (ENSPKIG00000009922)	hpgd (ENSPKIG00000010035)	cep44 (ENSPKIG00000010095)	fbxo8 (ENSPKIG00000010171)	hand2 (ENSPKIG00000010209)	SCRG1 (ENSPKIG00000010226)	hmgb2a (ENSPKIG00000010260)	galnt7 (ENSPKIG00000010314)	galntl6 (ENSPKIG00000010410)	FAM193A (ENSPKIG00000010534)	ENSPKIG00000010651 ##30	ENSPKIG00000010675	sparcl1 (ENSPKIG00000010703) ##22	ENSPKIG00000010743	ENSPKIG00000010758	cnga1a (ENSPKIG00000010788)	ENSPKIG00000010824	bdh2 (ENSPKIG00000010846)	cisd2 (ENSPKIG00000010875)	suclg1 (ENSPKIG00000010907)	ctnna2 (ENSPKIG00000010980)	LRRTM1 (ENSPKIG00000011082)	ADRA1D (ENSPKIG00000011098)	ENSPKIG00000011109	ENSPKIG00000011130	smox (ENSPKIG00000011205)	rnf24 (ENSPKIG00000011272)	FBXO41 (ENSPKIG00000011332)
Spotted gar	MODERN SPECIES	670	wdr17 (ENSLOCG00000013618)	gpm6aa (ENSLOCG00000013615)	glra3 (ENSLOCG00000013603)	hpgd (ENSLOCG00000013597)	cep44 (ENSLOCG00000013590)	fbxo8 (ENSLOCG00000013587)	hand2 (ENSLOCG00000013581)	hmgb2a (ENSLOCG00000013578)	galnt7 (ENSLOCG00000013565)	galntl6 (ENSLOCG00000013556)	FAM193A (ENSLOCG00000013548)	ENSLOCG00000013545 ##30	ENSLOCG00000013541	ENSLOCG00000013538	ENSLOCG00000013532	sparcl1 (ENSLOCG00000013522) ##22	ENSLOCG00000013517	ENSLOCG00000013511	ENSLOCG00000013509	ENSLOCG00000013504	ENSLOCG00000013500 #22	uso1 (ENSLOCG00000013485)	g3bp2a (ENSLOCG00000013470) ##20	CDKL2 (ENSLOCG00000013464)	ENSLOCG00000013461	pkd2 (ENSLOCG00000013447)	abcg2a (ENSLOCG00000013438)	ppm1kb (ENSLOCG00000013435)	ENSLOCG00000013433	mtap (ENSLOCG00000013426)	RIGI (ENSLOCG00000013422)
Reedfish	MODERN SPECIES	27	wdr17 (ENSECRG00000016860)	gpm6aa (ENSECRG00000016736)	glra3 (ENSECRG00000016525)	hpgd (ENSECRG00000016454)	cep44 (ENSECRG00000016427)	fbxo8 (ENSECRG00000016398)	hand2 (ENSECRG00000016377)	SCRG1 (ENSECRG00000016365)	hmgb2a (ENSECRG00000016345)	galnt7 (ENSECRG00000015660)	ENSECRG00000015568	galntl6 (ENSECRG00000015478)	FAM193A (ENSECRG00000015411)	ENSECRG00000015372 ##30	ENSECRG00000015231	ENSECRG00000015106 ##22	ENSECRG00000015045
Sarcopterygii	ANCESTRAL SPECIES	133																ENSGT00510000046787.e.a ##22	ENSGT00390000017018.b	ENSGT00390000011365.b ##20	ENSGT00940000160368	ENSGT00940000159025	ENSGT00940000156633	ENSGT00940000175002	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00950000183175.B.b	ENSGT01030000234633.C.b	ENSGT00940000153912.B
Tetrapoda	ANCESTRAL SPECIES	25	ENSGT00940000160064.b	ENSGT00940000155192	ENSGT00530000064550.A	ENSGT00940000153912.B	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00940000163989.a.b	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000159025	ENSGT00510000046787.e.a ##22	ENSGT00390000017018.b	ENSGT00390000011365.b ##20	ENSGT00940000160368	ENSGT01030000235199	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A
Amniota	ANCESTRAL SPECIES	2	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00940000163989.a.b	ENSGT00610000087446	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Sauria	ANCESTRAL SPECIES	6	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00940000160856	ENSGT00390000017405	ENSGT00940000161743	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000158189	ENSGT00940000165755	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000163989.a.a	ENSGT00390000015889	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00390000014810.b	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000158189	ENSGT00940000165755	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000163989.a.a	ENSGT00390000015889	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a
Aves	ANCESTRAL SPECIES	51	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Neognathae	ANCESTRAL SPECIES	41	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Galloanserae	ANCESTRAL SPECIES	34	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000011365.b ##20	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00940000173785	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856.h	ENSGT00940000160856.g	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Japanese quail	MODERN SPECIES	22	ENSCJPG00005009976	G3BP2 (ENSCJPG00005009977) ##20	BMP2K (ENSCJPG00005009978)	PAQR3 (ENSCJPG00005009979)	ANTXR2 (ENSCJPG00005009983)	PRDM8 (ENSCJPG00005009988)	FGF5 (ENSCJPG00005009989)	BMP3 (ENSCJPG00005009992)	RASGEF1B (ENSCJPG00005009993)	PRKG2 (ENSCJPG00005009999)	PKD2 (ENSCJPG00005010000)	SPP1 (ENSCJPG00005010001)	ENSCJPG00005010004	IBSP (ENSCJPG00005010005)	ENSCJPG00005010006	SPARCL1 (ENSCJPG00005010007) ##22	NUDT9 (ENSCJPG00005010008)	ENSCJPG00005010009	ENSCJPG00005010028	KLHL8 (ENSCJPG00005010034)	AFF1 (ENSCJPG00005010035)	PTPN13 (ENSCJPG00005010036)	MAPK10 (ENSCJPG00005010037)	ARHGAP24 (ENSCJPG00005010039)	COPS4 (ENSCJPG00005010040)	LIN54 (ENSCJPG00005010041)	THAP9 (ENSCJPG00005010042)	SEC31A (ENSCJPG00005010043)	SCD5 (ENSCJPG00005010044)	TMEM150C (ENSCJPG00005010047)	ENOPH1 (ENSCJPG00005010048)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000011365.b ##20	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00940000173410	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856.h	ENSGT00940000160856.g	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Chicken	MODERN SPECIES	33	AREG (ENSGALG00010003223)	USO1 (ENSGALG00010002441)	G3BP2 (ENSGALG00010002459) ##20	BMP2K (ENSGALG00010003165)	PAQR3 (ENSGALG00010003171)	ANTXR2 (ENSGALG00010003189)	PRDM8 (ENSGALG00010002796)	FGF5 (ENSGALG00010002801)	BMP3 (ENSGALG00010002819)	RASGEF1B (ENSGALG00010002880)	PRKG2 (ENSGALG00010003198)	PKD2 (ENSGALG00010003204)	SPP1 (ENSGALG00010003220)	MEPE (ENSGALG00010002469)	IBSP (ENSGALG00010002428)	SPARCL1 (ENSGALG00010003771) ##22	NUDT9 (ENSGALG00010003788)	ENSGALG00010004976	ENSGALG00010003797	KLHL8 (ENSGALG00010003816)	ENSGALG00010004505	PTPN13 (ENSGALG00010003823)	MAPK10 (ENSGALG00010003834)	ARHGAP24 (ENSGALG00010003878)	COPS4 (ENSGALG00010003894)	LIN54 (ENSGALG00010003899)	THAP9 (ENSGALG00010003910)	SEC31A (ENSGALG00010003925)	SCD5 (ENSGALG00010003948)	TMEM150C (ENSGALG00010003981)	ENOPH1 (ENSGALG00010003988)
Turkey	MODERN SPECIES	24	SCD5 (ENSMGAG00000008016)	ENSMGAG00000022538	ENSMGAG00000007943	ENSMGAG00000007913	ENSMGAG00000016550	COPS4 (ENSMGAG00000007890)	ENSMGAG00000007859	ENSMGAG00000007800	ENSMGAG00000017609	ENSMGAG00000007675	ENSMGAG00000022999	ENSMGAG00000007557	ENSMGAG00000007610	AFF1 (ENSMGAG00000007646)	ENSMGAG00000022067	ENSMGAG00000007541 ##22	ENSMGAG00000007547	ENSMGAG00000022528	ENSMGAG00000019649	ENSMGAG00000007496	ENSMGAG00000007518	ENSMGAG00000007522	PKD2 (ENSMGAG00000007470)	ENSMGAG00000007424	ENSMGAG00000007408	ENSMGAG00000007405	ENSMGAG00000007399	ENSMGAG00000018376	ENSMGAG00000007307	ENSMGAG00000007258	ENSMGAG00000007285
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090.a	ENSGT01030000234578.A.a	ENSGT00940000154426	ENSGT00440000039914
Pink-footed goose	MODERN SPECIES	133	BMP2K (ENSABRG00000007090)	PAQR3 (ENSABRG00000007085)	ANTXR2 (ENSABRG00000007073)	PRDM8 (ENSABRG00000007068)	FGF5 (ENSABRG00000007009)	CFAP299 (ENSABRG00000006980)	BMP3 (ENSABRG00000006973)	RASGEF1B (ENSABRG00000006928)	PRKG2 (ENSABRG00000006902)	ABCG2 (ENSABRG00000006889)	PKD2 (ENSABRG00000006874)	SPP1 (ENSABRG00000006867)	ENSABRG00000006864	IBSP (ENSABRG00000006858)	ENSABRG00000006846	SPARCL1 (ENSABRG00000006836) ##22	NUDT9 (ENSABRG00000006827)
Duck	MODERN SPECIES	22	EREG (ENSAPLG00000012982)	AREG (ENSAPLG00000017459)	USO1 (ENSAPLG00000013128)	ENSAPLG00000023742	G3BP2 (ENSAPLG00000013777) ##20	BMP2K (ENSAPLG00000014134)	PAQR3 (ENSAPLG00000018923)	ANTXR2 (ENSAPLG00000014640)	CFAP299 (ENSAPLG00000015021)	BMP3 (ENSAPLG00000015075)	RASGEF1B (ENSAPLG00000015111)	PRKG2 (ENSAPLG00000015473)	PKD2 (ENSAPLG00000002737)	ENSAPLG00000003038	ENSAPLG00000028651	SPARCL1 (ENSAPLG00000003209) ##22	ENSAPLG00000021509	ENSAPLG00000029063	ENSAPLG00000029297	KLHL8 (ENSAPLG00000003622)	AFF1 (ENSAPLG00000004059)	ENSAPLG00000020567	ENSAPLG00000028936	MAPK10 (ENSAPLG00000005856)	ARHGAP24 (ENSAPLG00000006223)	COPS4 (ENSAPLG00000009737)	ENSAPLG00000029432	LIN54 (ENSAPLG00000009904)	ENSAPLG00000027320	SEC31A (ENSAPLG00000010192)	HNRNPDL (ENSAPLG00000011774)
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT01030000235152.b	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT01030000235152.b	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Golden eagle	MODERN SPECIES		CDS1 (ENSACCG00020001800)	ENSACCG00020001530	ENSACCG00020001498	ABRAXAS1 (ENSACCG00020001477)	ENSACCG00020001460	HELQ (ENSACCG00020001377)	HPSE (ENSACCG00020001279)	COQ2 (ENSACCG00020001262)	PLAC8 (ENSACCG00020001242)	MKS1 (ENSACCG00020001222)	ABCG2 (ENSACCG00020001203)	PKD2 (ENSACCG00020001186)	SPP1 (ENSACCG00020001167)	IBSP (ENSACCG00020001159)	ENSACCG00020001144	SPARCL1 (ENSACCG00020001124) ##22	NUDT9 (ENSACCG00020001102)	HSD17B11 (ENSACCG00020001036)	KLHL8 (ENSACCG00020000913)	AFF1 (ENSACCG00020000855)	PTPN13 (ENSACCG00020000760)	MAPK10 (ENSACCG00020000508)	ARHGAP24 (ENSACCG00020000481)	COPS4 (ENSACCG00020000442)	LIN54 (ENSACCG00020000408)	THAP9 (ENSACCG00020000344)	SEC31A (ENSACCG00020000311)	SCD5 (ENSACCG00020000289)	TMEM150C (ENSACCG00020000287)	ENOPH1 (ENSACCG00020000285)	HNRNPDL (ENSACCG00020000282)
Kakapo	MODERN SPECIES	24	ENSSHBG00005011685	ENSSHBG00005011661	ABRAXAS1 (ENSSHBG00005011622)	ENSSHBG00005011599	HELQ (ENSSHBG00005011559)	HPSE (ENSSHBG00005011497)	COQ2 (ENSSHBG00005011445)	PLAC8 (ENSSHBG00005011413)	ENSSHBG00005011399	ABCG2 (ENSSHBG00005011359)	PKD2 (ENSSHBG00005010402)	SPP1 (ENSSHBG00005000720)	ENSSHBG00005000710	IBSP (ENSSHBG00005000684)	DMP1 (ENSSHBG00005015505)	SPARCL1 (ENSSHBG00005015499) ##22	NUDT9 (ENSSHBG00005015494)	ENSSHBG00005015489	ENSSHBG00005015484	KLHL8 (ENSSHBG00005015480)	AFF1 (ENSSHBG00005015467)	PTPN13 (ENSSHBG00005015414)	MAPK10 (ENSSHBG00005015385)	ARHGAP24 (ENSSHBG00005015377)	COPS4 (ENSSHBG00005015370)	LIN54 (ENSSHBG00005015363)	ENSSHBG00005015348	THAP9 (ENSSHBG00005015342)	SEC31A (ENSSHBG00005015303)	SCD5 (ENSSHBG00005015283)	TMEM150C (ENSSHBG00005015275)
Passeriformes	ANCESTRAL SPECIES	4	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00940000156733	ENSGT00940000156801	ENSGT00940000158403	ENSGT00940000157587	ENSGT00390000016264	ENSGT00390000017043	ENSGT00940000156171	ENSGT00940000157878	ENSGT00940000156589	ENSGT00940000161998	ENSGT00950000182915.a.a.b	ENSGT00390000008828
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00940000173785	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00940000156733	ENSGT00940000156801	ENSGT00940000158403	ENSGT00940000157587.i	ENSGT00390000016264	ENSGT00390000017043	ENSGT00940000156171.b	ENSGT00940000157878	ENSGT00940000156589	ENSGT00940000161998	ENSGT00950000182915.a.a.b	ENSGT00390000008828
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00940000173785	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000162658.a.b.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00940000173410	ENSGT00390000002485	ENSGT00940000173785	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583
Zebra finch	MODERN SPECIES	25	NKX6-1 (ENSTGUG00000002130)	ENSTGUG00000002133	ABRAXAS1 (ENSTGUG00000002146)	ENSTGUG00000024201	ENSTGUG00000028005	HELQ (ENSTGUG00000002154)	HPSE (ENSTGUG00000002169)	COQ2 (ENSTGUG00000002188)	PLAC8 (ENSTGUG00000002199)	ABCG2 (ENSTGUG00000002200)	PKD2 (ENSTGUG00000002213)	SPP1 (ENSTGUG00000002233)	ENSTGUG00000023586	IBSP (ENSTGUG00000002236)	ENSTGUG00000022654	SPARCL1 (ENSTGUG00000002242) ##22	NUDT9 (ENSTGUG00000002249)	HSD17B11 (ENSTGUG00000002260)	KLHL8 (ENSTGUG00000002275)	ENSTGUG00000002283	MAML3 (ENSTGUG00000002284)	SCOC (ENSTGUG00000026865)	ENSTGUG00000002287	ELMOD2 (ENSTGUG00000028132)	TBC1D9 (ENSTGUG00000002325)	RNF150 (ENSTGUG00000029099)	ZNF330 (ENSTGUG00000002360)	ENSTGUG00000002368	ENSTGUG00000025612	INPP4B (ENSTGUG00000021408)	USP38 (ENSTGUG00000002389)
Common canary	MODERN SPECIES	2	ENSSCAG00000015336	ENSSCAG00000015341	ABRAXAS1 (ENSSCAG00000015343)	ENSSCAG00000015345	HELQ (ENSSCAG00000015353)	HPSE (ENSSCAG00000015375)	COQ2 (ENSSCAG00000015382)	PLAC8 (ENSSCAG00000015390)	ABCG2 (ENSSCAG00000015393)	PKD2 (ENSSCAG00000015406)	ENSSCAG00000015440	ENSSCAG00000015441	ENSSCAG00000015443	IBSP (ENSSCAG00000015445)	ENSSCAG00000000014	ENSSCAG00000000016 ##22	NUDT9 (ENSSCAG00000000018)	HSD17B11 (ENSSCAG00000000023)	ENSSCAG00000000061	ENSSCAG00000000343	ENSSCAG00000000347	KLHL8 (ENSSCAG00000000353)	ENSSCAG00000000364
Medium ground finch	MODERN SPECIES	7	CDS1 (ENSGFOG00000006846)	ENSGFOG00000006833	ENSGFOG00000006825	ABRAXAS1 (ENSGFOG00000006816)	ENSGFOG00000006813	HELQ (ENSGFOG00000006634)	HPSE (ENSGFOG00000006616)	COQ2 (ENSGFOG00000006608)	PLAC8 (ENSGFOG00000006599)	ENSGFOG00000006591	ABCG2 (ENSGFOG00000006578)	PKD2 (ENSGFOG00000005660)	SPP1 (ENSGFOG00000005629)	IBSP (ENSGFOG00000005618)	ENSGFOG00000005607	SPARCL1 (ENSGFOG00000005588) ##22	NUDT9 (ENSGFOG00000005581)	ENSGFOG00000005576	HSD17B11 (ENSGFOG00000005567)	KLHL8 (ENSGFOG00000005557)	BMP3 (ENSGFOG00000005554)	FGF5 (ENSGFOG00000005491)	ANTXR2 (ENSGFOG00000005469)	ENSGFOG00000005463	PAQR3 (ENSGFOG00000005443)	BMP2K (ENSGFOG00000005407)
Flycatcher	MODERN SPECIES	22	HPSE (ENSFALG00000005222)	COQ2 (ENSFALG00000028054)	PLAC8 (ENSFALG00000005191)	ENSFALG00000023494	ENSFALG00000026639	ABCG2 (ENSFALG00000005172)	ENSFALG00000023090	ENSFALG00000025706	PKD2 (ENSFALG00000005139)	SPP1 (ENSFALG00000005111)	ENSFALG00000027951	ENSFALG00000026766	ENSFALG00000025272	IBSP (ENSFALG00000005087)	ENSFALG00000027885	SPARCL1 (ENSFALG00000005055) ##22	NUDT9 (ENSFALG00000024339)	HSD17B11 (ENSFALG00000005021)	KLHL8 (ENSFALG00000005003)	SMARCA5 (ENSFALG00000004987)	GAB1 (ENSFALG00000004978)	USP38 (ENSFALG00000004974)	INPP4B (ENSFALG00000004964)	IL15 (ENSFALG00000027447)	ZNF330 (ENSFALG00000022973)	ENSFALG00000027544	ENSFALG00000004942	TBC1D9 (ENSFALG00000004931)	ELMOD2 (ENSFALG00000004921)	MGAT4D (ENSFALG00000004911)	CLGN (ENSFALG00000004907)
Great tit	MODERN SPECIES	23	ENSPMJG00000008386	ABRAXAS1 (ENSPMJG00000008385)	ENSPMJG00000008384	HELQ (ENSPMJG00000008381)	HPSE (ENSPMJG00000008379)	COQ2 (ENSPMJG00000008378)	PLAC8 (ENSPMJG00000008376)	ENSPMJG00000008375	ABCG2 (ENSPMJG00000008371)	PKD2 (ENSPMJG00000008367)	SPP1 (ENSPMJG00000008342)	ENSPMJG00000008338	ENSPMJG00000008336	IBSP (ENSPMJG00000008335)	DMP1 (ENSPMJG00000008332)	SPARCL1 (ENSPMJG00000008329) ##22	NUDT9 (ENSPMJG00000008327)	ENSPMJG00000008325	ENSPMJG00000008324	KLHL8 (ENSPMJG00000008322)	SMARCA5 (ENSPMJG00000008316)	GAB1 (ENSPMJG00000008314)	USP38 (ENSPMJG00000008289)	INPP4B (ENSPMJG00000008257)	IL15 (ENSPMJG00000008228)	ZNF330 (ENSPMJG00000008227)	ENSPMJG00000008225	RNF150 (ENSPMJG00000008224)	TBC1D9 (ENSPMJG00000008167)	ELMOD2 (ENSPMJG00000008165)	MGAT4D (ENSPMJG00000008164)
African ostrich	MODERN SPECIES	662												ABCG2 (ENSSCUG00000007033)	PKD2 (ENSSCUG00000007052)	ENSSCUG00000007059	DMP1 (ENSSCUG00000007060)	SPARCL1 (ENSSCUG00000007063) ##22	NUDT9 (ENSSCUG00000007070)	HSD17B11 (ENSSCUG00000007073)	KLHL8 (ENSSCUG00000007076)	AFF1 (ENSSCUG00000007080)	ENSSCUG00000007087	PTPN13 (ENSSCUG00000007090)	MAPK10 (ENSSCUG00000007107)	ARHGAP24 (ENSSCUG00000007112)	COPS4 (ENSSCUG00000007121)	LIN54 (ENSSCUG00000007125)	THAP9 (ENSSCUG00000007127)	SEC31A (ENSSCUG00000007129)	SCD5 (ENSSCUG00000007138)	TMEM150C (ENSSCUG00000007139)	ENOPH1 (ENSSCUG00000007140)
Australian saltwater crocodile	MODERN SPECIES	65	SNCA (ENSCPRG00005013003)	GPRIN3 (ENSCPRG00005013008)	ENSCPRG00005013013	ENSCPRG00005013018	HERC3 (ENSCPRG00005013035)	ENSCPRG00005013063	PYURF (ENSCPRG00005013066)	HERC6 (ENSCPRG00005013075)	PPM1K (ENSCPRG00005013096)	ENSCPRG00005013100	ENSCPRG00005013114	PKD2 (ENSCPRG00005013148)	SPP1 (ENSCPRG00005013275)	IBSP (ENSCPRG00005013280)	DMP1 (ENSCPRG00005013287)	SPARCL1 (ENSCPRG00005013294) ##22	NUDT9 (ENSCPRG00005013342)	HSD17B11 (ENSCPRG00005013349)	ENSCPRG00005013353	KLHL8 (ENSCPRG00005013360)	AFF1 (ENSCPRG00005013372)	PTPN13 (ENSCPRG00005013391)	MAPK10 (ENSCPRG00005013428)	ARHGAP24 (ENSCPRG00005013430)	ENSCPRG00005013431	ENSCPRG00005013439	ENSCPRG00005013441	LIN54 (ENSCPRG00005013448)	THAP9 (ENSCPRG00005013454)	SEC31A (ENSCPRG00005013624)	SCD5 (ENSCPRG00005014907)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00390000014810.b	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b
Testudinoidea	ANCESTRAL SPECIES	34	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00390000015889.a	ENSGT00940000163989.a.a	ENSGT00390000015889.b	ENSGT00610000087446	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350
Emydidae	ANCESTRAL SPECIES	27	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889.a	ENSGT00940000163989.a.a	ENSGT00390000015889.b	ENSGT00610000087446	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00390000014810.b	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965
Three-toed box turtle	MODERN SPECIES	377	SNCA (ENSTMTG00000007335)	GPRIN3 (ENSTMTG00000007402)	ENSTMTG00000007424	ENSTMTG00000007435	HERC3 (ENSTMTG00000007487)	ENSTMTG00000007790	ENSTMTG00000007800	ENSTMTG00000007829	PPM1K (ENSTMTG00000007860)	ENSTMTG00000007889	ENSTMTG00000008085	PKD2 (ENSTMTG00000008154)	ENSTMTG00000008471	ENSTMTG00000008479	ENSTMTG00000008510	SPARCL1 (ENSTMTG00000003385) ##22	NUDT9 (ENSTMTG00000003447)	HSD17B11 (ENSTMTG00000003476)	ENSTMTG00000003528	KLHL8 (ENSTMTG00000003551)	AFF1 (ENSTMTG00000003589)	PTPN13 (ENSTMTG00000004005)	MAPK10 (ENSTMTG00000008092)	ARHGAP24 (ENSTMTG00000011532)	WDFY3 (ENSTMTG00000011583)	CDS1 (ENSTMTG00000011826)	ENSTMTG00000011867	GPAT3 (ENSTMTG00000011880)	ABRAXAS1 (ENSTMTG00000011906)	ENSTMTG00000011934	HELQ (ENSTMTG00000011954)
painted turtle	MODERN SPECIES	2431	GPRIN3 (ENSCPBG00000004935)	ENSCPBG00000004943	ENSCPBG00000004984	HERC3 (ENSCPBG00000005002)	ENSCPBG00000005019	PYURF (ENSCPBG00000005028)	PIGY (ENSCPBG00000005034)	HERC6 (ENSCPBG00000005044)	ENSCPBG00000005087	PPM1K (ENSCPBG00000005094)	ENSCPBG00000005107	ENSCPBG00000005114	PKD2 (ENSCPBG00000005129)	SPP1 (ENSCPBG00000005175)	ENSCPBG00000005183	SPARCL1 (ENSCPBG00000005198) ##22	NUDT9 (ENSCPBG00000005216)	HSD17B11 (ENSCPBG00000005232)	ENSCPBG00000005364	KLHL8 (ENSCPBG00000005370)	AFF1 (ENSCPBG00000005382)	ENSCPBG00000005400	PTPN13 (ENSCPBG00000005412)	MAPK10 (ENSCPBG00000005448)	ARHGAP24 (ENSCPBG00000005490)	ENSCPBG00000005522	WDFY3 (ENSCPBG00000005618)	ENSCPBG00000005949	NKX6-1 (ENSCPBG00000007754)	GPAT3 (ENSCPBG00000007766)	ABRAXAS1 (ENSCPBG00000007774)
Testudinidae	ANCESTRAL SPECIES	39	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889.b	ENSGT00610000087446	ENSGT00940000165755	ENSGT00390000015889.a	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT01000000220672	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00960000189615	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350
Abingdon island giant tortoise	MODERN SPECIES	2140									ENSCABG00000003458	ENSCABG00000003465	PPM1K (ENSCABG00000003469)	ENSCABG00000003470	ENSCABG00000003473	PKD2 (ENSCABG00000003483)	ENSCABG00000003652	SPARCL1 (ENSCABG00000003668) ##22	NUDT9 (ENSCABG00000003753)	HSD17B13 (ENSCABG00000003755)	KLHL8 (ENSCABG00000003756)	AFF1 (ENSCABG00000003762)	ENSCABG00000003789	ENSCABG00000003796	ENSCABG00000003798	ENSCABG00000003802	MAPK10 (ENSCABG00000003904)	ARHGAP24 (ENSCABG00000005865)
Goode s thornscrub tortoise	MODERN SPECIES	19	MMRN1 (ENSGEVG00005010519)	SNCA (ENSGEVG00005010556)	GPRIN3 (ENSGEVG00005010604)	ENSGEVG00005010636	FAM13A (ENSGEVG00005010679)	HERC3 (ENSGEVG00005010789)	ENSGEVG00005010915	PYURF (ENSGEVG00005010978)	HERC6 (ENSGEVG00005011042)	PPM1K (ENSGEVG00005011360)	ENSGEVG00005011425	ENSGEVG00005011501	PKD2 (ENSGEVG00005000452)	ENSGEVG00005000695	DMP1 (ENSGEVG00005000699)	SPARCL1 (ENSGEVG00005000722) ##22	NUDT9 (ENSGEVG00005000747)	HSD17B11 (ENSGEVG00005000766)	ENSGEVG00005000782	KLHL8 (ENSGEVG00005000828)	AFF1 (ENSGEVG00005000895)	ENSGEVG00005000968	ENSGEVG00005000978	PTPN13 (ENSGEVG00005001136)	MAPK10 (ENSGEVG00005001905)	ARHGAP24 (ENSGEVG00005002926)	WDFY3 (ENSGEVG00005003027)	ENSGEVG00005003099	CDS1 (ENSGEVG00005003115)	ENSGEVG00005003134	GPAT3 (ENSGEVG00005003150)
Mammalia	ANCESTRAL SPECIES	1	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00610000087446	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165877
Theria	ANCESTRAL SPECIES	6	ENSGT00940000162273	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Eutheria	ANCESTRAL SPECIES	2	ENSGT00570000079168.b.b.b	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a ##22
Hedgehog	MODERN SPECIES	4766																SPARCL1 (ENSEEUG00000001763) ##22
Common shrew	MODERN SPECIES	3689																SPARCL1 (ENSSARG00000010408) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Suina	ANCESTRAL SPECIES	22	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Chacoan peccary	MODERN SPECIES	142	TIGD2 (ENSCWAG00000016360)	FAM13A (ENSCWAG00000016443)	HERC3 (ENSCWAG00000017308)	NAP1L5 (ENSCWAG00000017359)	PYURF (ENSCWAG00000017377)	ENSCWAG00000017417	HERC6 (ENSCWAG00000017553)	PPM1K (ENSCWAG00000017943)	ABCG2 (ENSCWAG00000018068)	PKD2 (ENSCWAG00000018149)	SPP1 (ENSCWAG00000018219)	MEPE (ENSCWAG00000018384)	IBSP (ENSCWAG00000018436)	DMP1 (ENSCWAG00000018475)	ENSCWAG00000018555	SPARCL1 (ENSCWAG00000018606) ##22	NUDT9 (ENSCWAG00000018721)	HSD17B11 (ENSCWAG00000018762)	HSD17B13 (ENSCWAG00000018808)	KLHL8 (ENSCWAG00000018874)	AFF1 (ENSCWAG00000019010)	ENSCWAG00000020279	C4orf36 (ENSCWAG00000020284)	ENSCWAG00000020289	SLC10A6 (ENSCWAG00000020294)	PTPN13 (ENSCWAG00000007867)	MAPK10 (ENSCWAG00000008717)	ARHGAP24 (ENSCWAG00000009694)	ENSCWAG00000009954	WDFY3 (ENSCWAG00000010017)	CDS1 (ENSCWAG00000010940)
Pig	MODERN SPECIES	16	FAM13A (ENSSSCG00000026196)	HERC3 (ENSSSCG00000009208)	ENSSSCG00000009211	HERC5 (ENSSSCG00000030548)	HERC6 (ENSSSCG00000021712)	ENSSSCG00000048526	PPM1K (ENSSSCG00000038867)	ABCG2 (ENSSSCG00000009215)	ENSSSCG00000055653	PKD2 (ENSSSCG00000009217)	SPP1 (ENSSSCG00000009216)	MEPE (ENSSSCG00000028730)	IBSP (ENSSSCG00000009219)	DMP1 (ENSSSCG00000009220)	ENSSSCG00000009221	SPARCL1 (ENSSSCG00000009222) ##22	NUDT9 (ENSSSCG00000053724)	HSD17B11 (ENSSSCG00000009225)	HSD17B13 (ENSSSCG00000057393)	KLHL8 (ENSSSCG00000009226)	AFF1 (ENSSSCG00000023593)	ENSSSCG00000043871	C4orf36 (ENSSSCG00000032190)	SLC10A6 (ENSSSCG00000028952)	PTPN13 (ENSSSCG00000026655)	MAPK10 (ENSSSCG00000009228)	ENSSSCG00000058771	ARHGAP24 (ENSSSCG00000009229)	WDFY3 (ENSSSCG00000009230)	CDS1 (ENSSSCG00000009231)	NKX6-1 (ENSSSCG00000009232)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000158189	ENSGT00390000015889.o.b.a.a	ENSGT00610000087446.e	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT01100000264116	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00390000015889.o.b.a.a	ENSGT00390000015889.o.b.a.b	ENSGT00610000087446.e	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT01100000264116	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773
Odontoceti_a	ANCESTRAL SPECIES	26	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b.a.a	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773	ENSGT00390000003125
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000017443.m.a	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b.a.a	ENSGT00940000162703	ENSGT00940000156633	ENSGT00940000160729.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT01100000266223	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773	ENSGT00390000003125
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00570000079168.b.b.b	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.o.b.a.a	ENSGT00940000162703	ENSGT00940000156633	ENSGT00940000160729.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT01100000266223	ENSGT00770000121728	ENSGT00940000166403.b.a	ENSGT00940000160886.a.a.a	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b
Narwhal	MODERN SPECIES	307	TIGD2 (ENSMMNG00015011054)	ENSMMNG00015011038	FAM13A (ENSMMNG00015010904)	NAP1L5 (ENSMMNG00015010819)	HERC3 (ENSMMNG00015010732)	ENSMMNG00015010704	HERC5 (ENSMMNG00015010595)	PPM1K (ENSMMNG00015010529)	ENSMMNG00015010427	PKD2 (ENSMMNG00015010375)	SPP1 (ENSMMNG00015010339)	MEPE (ENSMMNG00015010312)	IBSP (ENSMMNG00015010295)	DMP1 (ENSMMNG00015010277)	ENSMMNG00015010260	SPARCL1 (ENSMMNG00015010232) ##22	NUDT9 (ENSMMNG00015010205)	ENSMMNG00015010191	SMIM31 (ENSMMNG00015010178)	ENSMMNG00015010166	ENSMMNG00015010157	MARCHF1 (ENSMMNG00015010133)	TMA16 (ENSMMNG00015010097)	NPY5R (ENSMMNG00015010079)	NPY1R (ENSMMNG00015010072)	NAF1 (ENSMMNG00015010060)	FSTL5 (ENSMMNG00015009982)	RAPGEF2 (ENSMMNG00015009895)	C4orf45 (ENSMMNG00015009860)	FNIP2 (ENSMMNG00015013476)	ENSMMNG00015013450
Beluga whale	MODERN SPECIES	13	ENSDLEG00000000521	GPRIN3 (ENSDLEG00000000510)	FAM13A (ENSDLEG00000000334)	NAP1L5 (ENSDLEG00000000280)	HERC3 (ENSDLEG00000000176)	ENSDLEG00000004711	HERC5 (ENSDLEG00000004491)	PPM1K (ENSDLEG00000004439)	ABCG2 (ENSDLEG00000004291)	PKD2 (ENSDLEG00000004214)	SPP1 (ENSDLEG00000004195)	MEPE (ENSDLEG00000004183)	IBSP (ENSDLEG00000004177)	DMP1 (ENSDLEG00000004170)	ENSDLEG00000004155	SPARCL1 (ENSDLEG00000004137) ##22	NUDT9 (ENSDLEG00000004125)	ENSDLEG00000004121	ENSDLEG00000004116	ENSDLEG00000004102	MARCH1 (ENSDLEG00000004098)	ENSDLEG00000004095	TMA16 (ENSDLEG00000004088)	NPY5R (ENSDLEG00000004085)	NPY1R (ENSDLEG00000004078)	NAF1 (ENSDLEG00000004067)	ENSDLEG00000004059	ENSDLEG00000004050	FSTL5 (ENSDLEG00000004031)	RAPGEF2 (ENSDLEG00000003915)	ENSDLEG00000003878
Vaquita	MODERN SPECIES	16	GPRIN3 (ENSPSNG00000000984)	FAM13A (ENSPSNG00000001226)	HERC3 (ENSPSNG00000001484)	NAP1L5 (ENSPSNG00000001558)	ENSPSNG00000001581	ENSPSNG00000001604	ENSPSNG00000001627	PPM1K (ENSPSNG00000001678)	ENSPSNG00000001718	PKD2 (ENSPSNG00000001761)	SPP1 (ENSPSNG00000001823)	MEPE (ENSPSNG00000001894)	IBSP (ENSPSNG00000001916)	DMP1 (ENSPSNG00000001944)	ENSPSNG00000001960	SPARCL1 (ENSPSNG00000001983) ##22	NUDT9 (ENSPSNG00000002014)	ENSPSNG00000002041	SMIM31 (ENSPSNG00000002054)	ENSPSNG00000002066	MARCHF1 (ENSPSNG00000002101)	ENSPSNG00000002131	TMA16 (ENSPSNG00000002152)	NPY5R (ENSPSNG00000002172)	NPY1R (ENSPSNG00000002184)	NAF1 (ENSPSNG00000002202)	FSTL5 (ENSPSNG00000002264)	RAPGEF2 (ENSPSNG00000002798)	ENSPSNG00000003526	C4orf45 (ENSPSNG00000003555)	FNIP2 (ENSPSNG00000003659)
Dolphin	MODERN SPECIES	2635																SPARCL1 (ENSTTRG00000004209) ##22	NUDT9 (ENSTTRG00000004207)	ENSTTRG00000004203
Sperm whale	MODERN SPECIES	18	FAM13A (ENSPCTG00005002764)	NAP1L5 (ENSPCTG00005002699)	HERC3 (ENSPCTG00005002665)	PYURF (ENSPCTG00005002646)	PIGY (ENSPCTG00005002636)	HERC5 (ENSPCTG00005002573)	PPM1K (ENSPCTG00005002532)	ABCG2 (ENSPCTG00005002498)	ENSPCTG00005002475	PKD2 (ENSPCTG00005002432)	SPP1 (ENSPCTG00005002383)	MEPE (ENSPCTG00005002360)	IBSP (ENSPCTG00005002349)	DMP1 (ENSPCTG00005002286)	ENSPCTG00005002264	SPARCL1 (ENSPCTG00005002237) ##22	NUDT9 (ENSPCTG00005002214)	APELA (ENSPCTG00005002196)	SMIM31 (ENSPCTG00005002184)	MARCH1 (ENSPCTG00005002160)	TMA16 (ENSPCTG00005002143)	NPY5R (ENSPCTG00005002132)	NPY1R (ENSPCTG00005002122)	NAF1 (ENSPCTG00005002113)	FSTL5 (ENSPCTG00005002028)	RAPGEF2 (ENSPCTG00005001911)	C4orf45 (ENSPCTG00005001862)	FNIP2 (ENSPCTG00005001615)	PPID (ENSPCTG00005001500)	ETFDH (ENSPCTG00005001436)	C7H4orf46 (ENSPCTG00005001404)
Blue whale	MODERN SPECIES	16	TIGD2 (ENSBMSG00010005929)	FAM13A (ENSBMSG00010005710)	NAP1L5 (ENSBMSG00010005642)	ENSBMSG00010005639	ENSBMSG00010005628	ENSBMSG00010005623	HERC5 (ENSBMSG00010005586)	PPM1K (ENSBMSG00010005504)	ENSBMSG00010005495	ENSBMSG00010005487	PKD2 (ENSBMSG00010005474)	SPP1 (ENSBMSG00010005446)	MEPE (ENSBMSG00010005430)	IBSP (ENSBMSG00010005424)	DMP1 (ENSBMSG00010005409)	SPARCL1 (ENSBMSG00010005387) ##22	NUDT9 (ENSBMSG00010005371)	ENSBMSG00010005361	SMIM31 (ENSBMSG00010005356)	ENSBMSG00010005350	MARCHF1 (ENSBMSG00010005336)	ENSBMSG00010005317	NPY5R (ENSBMSG00010005278)	NPY1R (ENSBMSG00010005263)	ENSBMSG00010005252	ENSBMSG00010005245	FSTL5 (ENSBMSG00010005190)	ENSBMSG00010005166	ENSBMSG00010005157	ENSBMSG00010005149	RAPGEF2 (ENSBMSG00010005109)
Pecora	ANCESTRAL SPECIES	15	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Percora_a	ANCESTRAL SPECIES	18	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000153112.D.c.a	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Goat	MODERN SPECIES	25	NSG1 (ENSCHIG00000008294)	STX18 (ENSCHIG00000020439)	MSX1 (ENSCHIG00000014094)	CYTL1 (ENSCHIG00000001722)	STK32B (ENSCHIG00000021477)	EVC2 (ENSCHIG00000014543)	EVC (ENSCHIG00000024455)	CRMP1 (ENSCHIG00000017354)	ENSCHIG00000008410	JAKMIP1 (ENSCHIG00000022605)	ENSCHIG00000014433	WFS1 (ENSCHIG00000025731)	PPP2R2C (ENSCHIG00000016344)	DMP1 (ENSCHIG00000024137)	DSPP (ENSCHIG00000016631)	SPARCL1 (ENSCHIG00000007139) ##22	NUDT9 (ENSCHIG00000020346)	HSD17B11 (ENSCHIG00000011780)	HSD17B13 (ENSCHIG00000020775)	KLHL8 (ENSCHIG00000015495)	AFF1 (ENSCHIG00000008450)	C4orf36 (ENSCHIG00000020322)	SLC10A6 (ENSCHIG00000014126)	ENSCHIG00000001076	PTPN13 (ENSCHIG00000021006)	ENSCHIG00000013818	ENSCHIG00000003527	ENSCHIG00000018060	MAPK10 (ENSCHIG00000012374)	ARHGAP24 (ENSCHIG00000022792)	ENSCHIG00000024192
Rambouillet Sheep	MODERN SPECIES	22	MSX1 (ENSOARG00020024231)	CYTL1 (ENSOARG00020024206)	STK32B (ENSOARG00020024051)	EVC2 (ENSOARG00020024014)	EVC (ENSOARG00020023672)	CRMP1 (ENSOARG00020023499)	ENSOARG00020023479	ENSOARG00020023467	JAKMIP1 (ENSOARG00020023163)	WFS1 (ENSOARG00020023129)	PPP2R2C (ENSOARG00020023090)	ENSOARG00020022932	ENSOARG00020022892	DMP1 (ENSOARG00020022854)	DSPP (ENSOARG00020022784)	SPARCL1 (ENSOARG00020022579) ##22	NUDT9 (ENSOARG00020022482)	ENSOARG00020022244	ENSOARG00020021968	AFF1 (ENSOARG00020021386)	C4orf36 (ENSOARG00020021226)	SLC10A6 (ENSOARG00020021292)	PTPN13 (ENSOARG00020019325)	ENSOARG00020019244	MAPK10 (ENSOARG00020018223)	ARHGAP24 (ENSOARG00020017927)	ENSOARG00020017855	WDFY3 (ENSOARG00020015498)	CDS1 (ENSOARG00020015132)	NKX6-1 (ENSOARG00020015056)	GPAT3 (ENSOARG00020014882)
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Bos	ANCESTRAL SPECIES	15	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00940000158464.k	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.n	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00940000158464.k	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.n.a	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223
Hybrid Bos Indicus	MODERN SPECIES	25	STK32B (ENSBIXG00005002027)	ENSBIXG00005014592	EVC2 (ENSBIXG00005014669)	ENSBIXG00005014684	EVC (ENSBIXG00005014829)	CRMP1 (ENSBIXG00005002160)	ENSBIXG00005014962	JAKMIP1 (ENSBIXG00005015199)	ENSBIXG00005015285	WFS1 (ENSBIXG00005015314)	PPP2R2C (ENSBIXG00005015372)	ENSBIXG00005015774	ENSBIXG00005016537	DMP1 (ENSBIXG00005016673)	ENSBIXG00005016723	SPARCL1 (ENSBIXG00005007329) ##22	NUDT9 (ENSBIXG00005016830)	ENSBIXG00005016839	HSD17B11 (ENSBIXG00005005731)	ENSBIXG00005016946	KLHL8 (ENSBIXG00005017118)	AFF1 (ENSBIXG00005017161)	C4orf36 (ENSBIXG00005017196)	ENSBIXG00005017214	ENSBIXG00005002799	SLC10A6 (ENSBIXG00005017247)	ENSBIXG00005017276	ENSBIXG00005017372	ENSBIXG00005002829	ENSBIXG00005005513	MAPK10 (ENSBIXG00005018360)
Cow	MODERN SPECIES	25	MSX1 (ENSBTAG00000010875)	CYTL1 (ENSBTAG00000011163)	STK32B (ENSBTAG00000015409)	EVC2 (ENSBTAG00000004277)	EVC (ENSBTAG00000004287)	CRMP1 (ENSBTAG00000004292)	ENSBTAG00000021729	JAKMIP1 (ENSBTAG00000011170)	ENSBTAG00000054994	WFS1 (ENSBTAG00000046671)	PPP2R2C (ENSBTAG00000020598)	ENSBTAG00000006508	ENSBTAG00000017829	DMP1 (ENSBTAG00000019132)	DSPP (ENSBTAG00000045714)	SPARCL1 (ENSBTAG00000004094) ##22	NUDT9 (ENSBTAG00000011354)	ENSBTAG00000052418	HSD17B11 (ENSBTAG00000006307)	HSD17B13 (ENSBTAG00000031679)	ENSBTAG00000047432	KLHL8 (ENSBTAG00000002455)	AFF1 (ENSBTAG00000018488)	C4orf36 (ENSBTAG00000051915)	ENSBTAG00000050963	ENSBTAG00000047514	PTPN13 (ENSBTAG00000014947)	ENSBTAG00000050276	ENSBTAG00000045839	MAPK10 (ENSBTAG00000020048)	ARHGAP24 (ENSBTAG00000003959)
Bos_a	ANCESTRAL SPECIES	21	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00940000158464.k	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.n	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000154222.d.b.d.g.a.a	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d
Domestic yak	MODERN SPECIES	25	CYTL1 (ENSBGRG00000010429)	STK32B (ENSBGRG00000010525)	EVC2 (ENSBGRG00000010733)	EVC (ENSBGRG00000011517)	ENSBGRG00000012265	CRMP1 (ENSBGRG00000012288)	C4orf50 (ENSBGRG00000012490)	JAKMIP1 (ENSBGRG00000012631)	ENSBGRG00000013050	WFS1 (ENSBGRG00000013121)	PPP2R2C (ENSBGRG00000013226)	ENSBGRG00000013414	ENSBGRG00000013725	DMP1 (ENSBGRG00000014603)	ENSBGRG00000014783	SPARCL1 (ENSBGRG00000014840) ##22	NUDT9 (ENSBGRG00000014966)	HSD17B11 (ENSBGRG00000015134)	ENSBGRG00000015430	KLHL8 (ENSBGRG00000015486)	AFF1 (ENSBGRG00000015861)	C4orf36 (ENSBGRG00000016444)	SLC10A6 (ENSBGRG00000016493)	PTPN13 (ENSBGRG00000016575)	ENSBGRG00000016870	ENSBGRG00000016888	MAPK10 (ENSBGRG00000017007)	ARHGAP24 (ENSBGRG00000018148)	ENSBGRG00000018396	WDFY3 (ENSBGRG00000018444)	ENSBGRG00000020638
Wild yak	MODERN SPECIES	1666															DSPP (ENSBMUG00000025197)	SPARCL1 (ENSBMUG00000025191) ##22	NUDT9 (ENSBMUG00000025184)	HSD17B11 (ENSBMUG00000025178)	HSD17B13 (ENSBMUG00000025176)	ENSBMUG00000025168	KLHL8 (ENSBMUG00000025163)	AFF1 (ENSBMUG00000025155)
American bison	MODERN SPECIES	2926															DSPP (ENSBBBG00000023372)	SPARCL1 (ENSBBBG00000023397) ##22	NUDT9 (ENSBBBG00000023429)	HSD17B11 (ENSBBBG00000023455)	HSD17B13 (ENSBBBG00000023490)	ENSBBBG00000023511	KLHL8 (ENSBBBG00000023566)	AFF1 (ENSBBBG00000006166)	C4orf36 (ENSBBBG00000023619)	SLC10A6 (ENSBBBG00000023627)	PTPN13 (ENSBBBG00000000291)	ENSBBBG00000008209	ENSBBBG00000006300
Siberian musk deer	MODERN SPECIES	1273	NSG1 (ENSMMSG00000022287)	STX18 (ENSMMSG00000022315)	MSX1 (ENSMMSG00000022332)	CYTL1 (ENSMMSG00000022341)	STK32B (ENSMMSG00000022366)	EVC2 (ENSMMSG00000014469)	EVC (ENSMMSG00000014574)	CRMP1 (ENSMMSG00000014696)	ENSMMSG00000014897	JAKMIP1 (ENSMMSG00000014962)	WFS1 (ENSMMSG00000015467)	PPP2R2C (ENSMMSG00000015500)	ENSMMSG00000015548	DMP1 (ENSMMSG00000015722)	ENSMMSG00000015791	SPARCL1 (ENSMMSG00000015840) ##22	NUDT9 (ENSMMSG00000015898)	HSD17B11 (ENSMMSG00000015946)	HSD17B13 (ENSMMSG00000016012)	KLHL8 (ENSMMSG00000016116)	AFF1 (ENSMMSG00000016294)	C4orf36 (ENSMMSG00000016405)	SLC10A6 (ENSMMSG00000016456)	PTPN13 (ENSMMSG00000016540)	MAPK10 (ENSMMSG00000016767)	ARHGAP24 (ENSMMSG00000017490)	WDFY3 (ENSMMSG00000017648)	CDS1 (ENSMMSG00000018080)	NKX6-1 (ENSMMSG00000018122)
Yarkand deer	MODERN SPECIES	29	MSX1 (ENSCHYG00000020422)	CYTL1 (ENSCHYG00000020364)	STK32B (ENSCHYG00000020103)	EVC2 (ENSCHYG00000019186)	EVC (ENSCHYG00000019037)	CRMP1 (ENSCHYG00000018819)	ENSCHYG00000018775	JAKMIP1 (ENSCHYG00000018225)	ENSCHYG00000018159	WFS1 (ENSCHYG00000018113)	PPP2R2C (ENSCHYG00000017967)	ENSCHYG00000017283	ENSCHYG00000016162	DMP1 (ENSCHYG00000015748)	ENSCHYG00000015331	SPARCL1 (ENSCHYG00000015173) ##22	ENSCHYG00000014882	ENSCHYG00000014859	HSD17B11 (ENSCHYG00000014635)	HSD17B13 (ENSCHYG00000014556)	KLHL8 (ENSCHYG00000014019)	AFF1 (ENSCHYG00000013429)	C4orf36 (ENSCHYG00000013363)	SLC10A6 (ENSCHYG00000013255)	PTPN13 (ENSCHYG00000011843)	ENSCHYG00000011708	ENSCHYG00000011686	ENSCHYG00000011591	ENSCHYG00000011569	MAPK10 (ENSCHYG00000010214)	ARHGAP24 (ENSCHYG00000009997)
Camelidae	ANCESTRAL SPECIES	44	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.o.b	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Alpaca	MODERN SPECIES	1539													MEPE (ENSVPAG00000004019)	IBSP (ENSVPAG00000004018)	DMP1 (ENSVPAG00000004015)	SPARCL1 (ENSVPAG00000004014) ##22	NUDT9 (ENSVPAG00000004012)	HSD17B11 (ENSVPAG00000004011)	HSD17B13 (ENSVPAG00000004010)	KLHL8 (ENSVPAG00000004009)	AFF1 (ENSVPAG00000004007)	C4orf36 (ENSVPAG00000004006)
Arabian camel	MODERN SPECIES	11	TIGD2 (ENSCDRG00005001330)	FAM13A (ENSCDRG00005000724)	NAP1L5 (ENSCDRG00005000636)	HERC3 (ENSCDRG00005000574)	PYURF (ENSCDRG00005000542)	HERC5 (ENSCDRG00005000439)	HERC6 (ENSCDRG00005000240)	PPM1K (ENSCDRG00005000180)	ABCG2 (ENSCDRG00005000132)	ENSCDRG00005000091	SPP1 (ENSCDRG00005007782)	MEPE (ENSCDRG00005007644)	IBSP (ENSCDRG00005007598)	DMP1 (ENSCDRG00005007545)	ENSCDRG00005007492	SPARCL1 (ENSCDRG00005007410) ##22	NUDT9 (ENSCDRG00005007374)	HSD17B11 (ENSCDRG00005007280)	HSD17B13 (ENSCDRG00005007167)	KLHL8 (ENSCDRG00005006939)	AFF1 (ENSCDRG00005006432)	C4orf36 (ENSCDRG00005006366)	SLC10A6 (ENSCDRG00005006339)	ENSCDRG00005006322	PTPN13 (ENSCDRG00005005955)	MAPK10 (ENSCDRG00005005394)	ARHGAP24 (ENSCDRG00005005261)	ENSCDRG00005005241	WDFY3 (ENSCDRG00005004624)	CDS1 (ENSCDRG00005004562)	ENSCDRG00005004541
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00390000015889.p	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Carnivora	ANCESTRAL SPECIES	5	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000158189	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Ursidae	ANCESTRAL SPECIES	17	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00390000011666.n.a	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Ursus	ANCESTRAL SPECIES	78	ENSGT00940000158189.c	ENSGT00390000015889.o.b	ENSGT00940000162703	ENSGT00940000162279	ENSGT00390000011666.n.a	ENSGT00940000175002	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D
Polar bear	MODERN SPECIES	285												MEPE (ENSUMAG00000025453)	IBSP (ENSUMAG00000025452)	DMP1 (ENSUMAG00000025451)	DSPP (ENSUMAG00000025449)	SPARCL1 (ENSUMAG00000025448) ##22	NUDT9 (ENSUMAG00000025447)	HSD17B11 (ENSUMAG00000025445)	HSD17B13 (ENSUMAG00000025444)	KLHL8 (ENSUMAG00000025441)	AFF1 (ENSUMAG00000025433)	C4orf36 (ENSUMAG00000025430)	SLC10A6 (ENSUMAG00000025429)	PTPN13 (ENSUMAG00000024943)	MAPK10 (ENSUMAG00000024932)	ENSUMAG00000024931	ARHGAP24 (ENSUMAG00000024930)	ENSUMAG00000024929
American black bear	MODERN SPECIES	1544																SPARCL1 (ENSUAMG00000025818) ##22	NUDT9 (ENSUAMG00000025816)	HSD17B11 (ENSUAMG00000025815)	HSD17B13 (ENSUAMG00000025814)	ENSUAMG00000025810
Giant Panda	MODERN SPECIES	2	HERC3 (ENSAMEG00000002929)	NAP1L5 (ENSAMEG00000020110)	ENSAMEG00000023876	PIGY (ENSAMEG00000030156)	HERC5 (ENSAMEG00000003022)	HERC6 (ENSAMEG00000003054)	ENSAMEG00000020111	PPM1K (ENSAMEG00000003084)	ABCG2 (ENSAMEG00000003095)	PKD2 (ENSAMEG00000003126)	SPP1 (ENSAMEG00000003156)	MEPE (ENSAMEG00000003176)	IBSP (ENSAMEG00000003185)	DMP1 (ENSAMEG00000003211)	DSPP (ENSAMEG00000030550)	SPARCL1 (ENSAMEG00000003222) ##22	NUDT9 (ENSAMEG00000003244)	HSD17B11 (ENSAMEG00000003269)	HSD17B13 (ENSAMEG00000003284)	KLHL8 (ENSAMEG00000003314)	AFF1 (ENSAMEG00000003337)	C4orf36 (ENSAMEG00000029259)	SLC10A6 (ENSAMEG00000003408)	PTPN13 (ENSAMEG00000003426)	ENSAMEG00000020112	ENSAMEG00000024509	MAPK10 (ENSAMEG00000003514)	ARHGAP24 (ENSAMEG00000003558)	ENSAMEG00000029199	WDFY3 (ENSAMEG00000003579)	CDS1 (ENSAMEG00000003633)
Mustelinae	ANCESTRAL SPECIES	50	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.o.b	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D
Ferret	MODERN SPECIES	214	ENSMPUG00000019098	TIGD2 (ENSMPUG00000019104)	FAM13A (ENSMPUG00000002154)	HERC3 (ENSMPUG00000002161)	NAP1L5 (ENSMPUG00000002166)	HERC5 (ENSMPUG00000002169)	HERC6 (ENSMPUG00000002187)	PPM1K (ENSMPUG00000002192)	ENSMPUG00000002193	PKD2 (ENSMPUG00000002232)	SPP1 (ENSMPUG00000002233)	MEPE (ENSMPUG00000002234)	IBSP (ENSMPUG00000002238)	DMP1 (ENSMPUG00000002241)	DSPP (ENSMPUG00000002243)	SPARCL1 (ENSMPUG00000002250) ##22	NUDT9 (ENSMPUG00000002258)	HSD17B11 (ENSMPUG00000002261)	KLHL8 (ENSMPUG00000002266)	AFF1 (ENSMPUG00000002270)	C4orf36 (ENSMPUG00000002275)	SLC10A6 (ENSMPUG00000002278)	PTPN13 (ENSMPUG00000002281)	MAPK10 (ENSMPUG00000002290)	ARHGAP24 (ENSMPUG00000002295)
American mink	MODERN SPECIES	390														DMP1 (ENSNVIG00000024864)	ENSNVIG00000024866	SPARCL1 (ENSNVIG00000024868) ##22	NUDT9 (ENSNVIG00000024870)	HSD17B11 (ENSNVIG00000024872)	HSD17B13 (ENSNVIG00000024873)	KLHL8 (ENSNVIG00000024877)	AFF1 (ENSNVIG00000024881)	CD036 (ENSNVIG00000024883)	SOAT (ENSNVIG00000024884)	PTPN13 (ENSNVIG00000024886)	ENSNVIG00000024896	ENSNVIG00000024897
Canidae	ANCESTRAL SPECIES	40	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00950000182922.a.a.a.b.a.b.a.b.a.c	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT00940000155440.d.j
Dog	MODERN SPECIES	25	FAM13A (ENSCAFG00845018414)	NAP1L5 (ENSCAFG00845018141)	HERC3 (ENSCAFG00845017244)	PYURF (ENSCAFG00845017065)	HERC5 (ENSCAFG00845016977)	HERC6 (ENSCAFG00845016852)	PPM1K (ENSCAFG00845016529)	ABCG2 (ENSCAFG00845016353)	PKD2 (ENSCAFG00845016245)	SPP1 (ENSCAFG00845016131)	MEPE (ENSCAFG00845015931)	IBSP (ENSCAFG00845015862)	ENSCAFG00845015806	DMP1 (ENSCAFG00845015764)	DSPP (ENSCAFG00845015696)	SPARCL1 (ENSCAFG00845015583) ##22	NUDT9 (ENSCAFG00845015495)	HSD17B13 (ENSCAFG00845015328)	ENSCAFG00845015190	KLHL8 (ENSCAFG00845015090)	AFF1 (ENSCAFG00845014804)	C4orf36 (ENSCAFG00845024944)	SLC10A6 (ENSCAFG00845024905)	PTPN13 (ENSCAFG00845024290)	ENSCAFG00845024181	ENSCAFG00845024149	MAPK10 (ENSCAFG00845023201)	ENSCAFG00845022736	ARHGAP24 (ENSCAFG00845022578)	WDFY3 (ENSCAFG00845022217)	CDS1 (ENSCAFG00845022114)
Dingo	MODERN SPECIES	342	ENSCAFG00020004515	HERC3 (ENSCAFG00020004591)	NAP1L5 (ENSCAFG00020007002)	ENSCAFG00020007012	HERC5 (ENSCAFG00020007018)	HERC6 (ENSCAFG00020007136)	PPM1K (ENSCAFG00020007240)	ABCG2 (ENSCAFG00020007278)	ENSCAFG00020008067	PKD2 (ENSCAFG00020008069)	SPP1 (ENSCAFG00020008078)	MEPE (ENSCAFG00020008084)	IBSP (ENSCAFG00020008106)	DMP1 (ENSCAFG00020008108)	DSPP (ENSCAFG00020008112)	SPARCL1 (ENSCAFG00020008125) ##22	NUDT9 (ENSCAFG00020008135)	HSD17B11 (ENSCAFG00020008138)	HSD17B13 (ENSCAFG00020008141)	ENSCAFG00020008146	KLHL8 (ENSCAFG00020008159)	AFF1 (ENSCAFG00020008224)	SLC10A6 (ENSCAFG00020008242)	PTPN13 (ENSCAFG00020008350)	ENSCAFG00020009916	MAPK10 (ENSCAFG00020009946)	ARHGAP24 (ENSCAFG00020010087)	WDFY3 (ENSCAFG00020010121)	CDS1 (ENSCAFG00020010454)	NKX6-1 (ENSCAFG00020010474)	ENSCAFG00020010476
Red fox	MODERN SPECIES	27	HERC3 (ENSVVUG00000007845)	NAP1L5 (ENSVVUG00000007916)	ENSVVUG00000007920	ENSVVUG00000007923	HERC5 (ENSVVUG00000007941)	HERC6 (ENSVVUG00000008207)	PPM1K (ENSVVUG00000008232)	ABCG2 (ENSVVUG00000008238)	ENSVVUG00000008260	PKD2 (ENSVVUG00000008312)	SPP1 (ENSVVUG00000009167)	MEPE (ENSVVUG00000009185)	IBSP (ENSVVUG00000009187)	DMP1 (ENSVVUG00000009195)	ENSVVUG00000009196	SPARCL1 (ENSVVUG00000009202) ##22	NUDT9 (ENSVVUG00000009210)	HSD17B11 (ENSVVUG00000009214)	HSD17B13 (ENSVVUG00000009228)	KLHL8 (ENSVVUG00000009232)	AFF1 (ENSVVUG00000009263)	C4orf36 (ENSVVUG00000009294)	SLC10A6 (ENSVVUG00000009303)	PTPN13 (ENSVVUG00000009481)	ENSVVUG00000013206	MAPK10 (ENSVVUG00000013277)	ARHGAP24 (ENSVVUG00000013997)	ENSVVUG00000014011	ENSVVUG00000014016	WDFY3 (ENSVVUG00000014061)	CDS1 (ENSVVUG00000014709)
Felidae	ANCESTRAL SPECIES	4	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509.c	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00390000005534.b.b.c.b.a.a.b.a.a	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509.c	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Tiger	MODERN SPECIES	44	HERC3 (ENSPTIG00000018458)	NAP1L5 (ENSPTIG00000001643)	PYURF (ENSPTIG00000020767)	PIGY (ENSPTIG00000001673)	ENSPTIG00000002645	HERC6 (ENSPTIG00000005611)	ENSPTIG00000016771	PPM1K (ENSPTIG00000017091)	ENSPTIG00000018743	ENSPTIG00000020828	SPP1 (ENSPTIG00000021399)	MEPE (ENSPTIG00000021972)	IBSP (ENSPTIG00000022053)	DMP1 (ENSPTIG00000022087)	DSPP (ENSPTIG00000022109)	SPARCL1 (ENSPTIG00000001327) ##22	NUDT9 (ENSPTIG00000006560)	HSD17B11 (ENSPTIG00000007742)	HSD17B13 (ENSPTIG00000009196)	KLHL8 (ENSPTIG00000010495)	AFF1 (ENSPTIG00000011838)	ENSPTIG00000015329	C4orf36 (ENSPTIG00000015620)	SLC10A6 (ENSPTIG00000016093)	PTPN13 (ENSPTIG00000016360)	MAPK10 (ENSPTIG00000019645)	ARHGAP24 (ENSPTIG00000005664)	WDFY3 (ENSPTIG00000008434)	CDS1 (ENSPTIG00000018182)	ENSPTIG00000018677	GPAT3 (ENSPTIG00000018848)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889.o.b	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00390000005534.b.b.c.b.a.a.b.a.a	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509.c	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
leopard	MODERN SPECIES	2	ENSPPRG00000023341	HERC3 (ENSPPRG00000022020)	PYURF (ENSPPRG00000018858)	PIGY (ENSPPRG00000020697)	HERC5 (ENSPPRG00000018278)	HERC6 (ENSPPRG00000014051)	ENSPPRG00000011197	PPM1K (ENSPPRG00000009659)	ENSPPRG00000008848	PKD2 (ENSPPRG00000007565)	ENSPPRG00000006977	MEPE (ENSPPRG00000004532)	IBSP (ENSPPRG00000003951)	DMP1 (ENSPPRG00000003749)	DSPP (ENSPPRG00000003345)	SPARCL1 (ENSPPRG00000002980) ##22	NUDT9 (ENSPPRG00000001877)	HSD17B11 (ENSPPRG00000001352)	HSD17B13 (ENSPPRG00000000914)	KLHL8 (ENSPPRG00000022636)	AFF1 (ENSPPRG00000023590)	C4orf36 (ENSPPRG00000020551)	SLC10A6 (ENSPPRG00000018990)	PTPN13 (ENSPPRG00000017293)	MAPK10 (ENSPPRG00000004716)	ENSPPRG00000003351	ARHGAP24 (ENSPPRG00000003142)	WDFY3 (ENSPPRG00000022861)	CDS1 (ENSPPRG00000014316)	NKX6-1 (ENSPPRG00000013390)	GPAT3 (ENSPPRG00000013201)
lion	MODERN SPECIES	4	FAM13A (ENSPLOG00000005414)	HERC3 (ENSPLOG00000005770)	NAP1L5 (ENSPLOG00000005898)	PYURF (ENSPLOG00000005924)	HERC5 (ENSPLOG00000005967)	HERC6 (ENSPLOG00000006131)	ENSPLOG00000006336	PPM1K (ENSPLOG00000006359)	ENSPLOG00000006408	PKD2 (ENSPLOG00000006456)	SPP1 (ENSPLOG00000006547)	MEPE (ENSPLOG00000006654)	IBSP (ENSPLOG00000006687)	DMP1 (ENSPLOG00000006728)	ENSPLOG00000006784	SPARCL1 (ENSPLOG00000006828) ##22	NUDT9 (ENSPLOG00000006898)	HSD17B11 (ENSPLOG00000006951)	HSD17B13 (ENSPLOG00000006994)	KLHL8 (ENSPLOG00000007059)	AFF1 (ENSPLOG00000007207)	ENSPLOG00000007406	C4orf36 (ENSPLOG00000007423)	SLC10A6 (ENSPLOG00000007456)	PTPN13 (ENSPLOG00000007651)	MAPK10 (ENSPLOG00000008731)	ARHGAP24 (ENSPLOG00000009317)	WDFY3 (ENSPLOG00000009473)	CDS1 (ENSPLOG00000009762)	NKX6-1 (ENSPLOG00000009814)	GPAT3 (ENSPLOG00000009847)
Cat	MODERN SPECIES	235	FAM13A (ENSFCAG00000015497)	HERC3 (ENSFCAG00000030844)	NAP1L5 (ENSFCAG00000022618)	ENSFCAG00000031593	ENSFCAG00000023946	HERC5 (ENSFCAG00000006163)	HERC6 (ENSFCAG00000008727)	PPM1K (ENSFCAG00000039463)	ABCG2 (ENSFCAG00000002841)	PKD2 (ENSFCAG00000002839)	SPP1 (ENSFCAG00000044995)	MEPE (ENSFCAG00000009103)	IBSP (ENSFCAG00000036214)	DMP1 (ENSFCAG00000046729)	DSPP (ENSFCAG00000025835)	SPARCL1 (ENSFCAG00000013900) ##22	NUDT9 (ENSFCAG00000003315)	HSD17B11 (ENSFCAG00000030181)	KLHL8 (ENSFCAG00000013928)	AFF1 (ENSFCAG00000029806)	C4orf36 (ENSFCAG00000036309)	SLC10A6 (ENSFCAG00000031386)	PTPN13 (ENSFCAG00000018332)	MAPK10 (ENSFCAG00000002234)	ARHGAP24 (ENSFCAG00000028582)	ENSFCAG00000022178	WDFY3 (ENSFCAG00000002946)	CDS1 (ENSFCAG00000028459)	NKX6-1 (ENSFCAG00000028918)	GPAT3 (ENSFCAG00000019375)	ENSFCAG00000049574
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.p	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.p	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.p	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791
Greater horseshoe bat	MODERN SPECIES	23	ENSRFEG00010004474	HERC6 (ENSRFEG00010004443)	ENSRFEG00010004429	ENSRFEG00010004423	PPM1K (ENSRFEG00010004404)	ENSRFEG00010004388	ENSRFEG00010004373	ENSRFEG00010004347	ENSRFEG00010004238	PKD2 (ENSRFEG00010004160)	SPP1 (ENSRFEG00010004130)	MEPE (ENSRFEG00010004107)	IBSP (ENSRFEG00010004083)	DMP1 (ENSRFEG00010004052)	DSPP (ENSRFEG00010004032)	SPARCL1 (ENSRFEG00010004013) ##22	NUDT9 (ENSRFEG00010003996)	HSD17B11 (ENSRFEG00010003976)	KLHL8 (ENSRFEG00010003941)	AFF1 (ENSRFEG00010003846)	C4orf36 (ENSRFEG00010003812)	SLC10A6 (ENSRFEG00010003798)	PTPN13 (ENSRFEG00010003712)	ENSRFEG00010003614	MAPK10 (ENSRFEG00010003450)	ENSRFEG00010003378	ARHGAP24 (ENSRFEG00010003345)	ENSRFEG00010003308	WDFY3 (ENSRFEG00010003045)	CDS1 (ENSRFEG00010002893)	NKX6-1 (ENSRFEG00010002866)
Microbat	MODERN SPECIES	949	ENSMLUG00000027952	ENSMLUG00000026890	HERC6 (ENSMLUG00000012209)	PPM1K (ENSMLUG00000008111)	ENSMLUG00000029738	ENSMLUG00000016050	ENSMLUG00000028298	ENSMLUG00000028011	PKD2 (ENSMLUG00000010300)	SPP1 (ENSMLUG00000010286)	MEPE (ENSMLUG00000010133)	IBSP (ENSMLUG00000010116)	DMP1 (ENSMLUG00000005713)	ENSMLUG00000029911	DSPP (ENSMLUG00000022580)	SPARCL1 (ENSMLUG00000007646) ##22	NUDT9 (ENSMLUG00000007624)	HSD17B11 (ENSMLUG00000007606)	KLHL8 (ENSMLUG00000016977)	AFF1 (ENSMLUG00000000293)	SLC10A6 (ENSMLUG00000002142)	PTPN13 (ENSMLUG00000002103)	MAPK10 (ENSMLUG00000014822)	ARHGAP24 (ENSMLUG00000014817)	WDFY3 (ENSMLUG00000011620)	CDS1 (ENSMLUG00000011596)	NKX6-1 (ENSMLUG00000012584)	ENSMLUG00000023867	GPAT3 (ENSMLUG00000017070)	ABRAXAS1 (ENSMLUG00000017061)	MRPS18C (ENSMLUG00000017057)
Megabat	MODERN SPECIES	1415																SPARCL1 (ENSPVAG00000009345) ##22
Equus	ANCESTRAL SPECIES	12	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.p	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Donkey	MODERN SPECIES	22	TIGD2 (ENSEASG00005025658)	FAM13A (ENSEASG00005012503)	NAP1L5 (ENSEASG00005012607)	HERC3 (ENSEASG00005012596)	PYURF (ENSEASG00005034657)	HERC5 (ENSEASG00005012643)	HERC6 (ENSEASG00005012691)	PPM1K (ENSEASG00005012713)	ENSEASG00005012717	PKD2 (ENSEASG00005012725)	SPP1 (ENSEASG00005012730)	MEPE (ENSEASG00005012732)	IBSP (ENSEASG00005012734)	DMP1 (ENSEASG00005012738)	DSPP (ENSEASG00005012740)	SPARCL1 (ENSEASG00005012743) ##22	NUDT9 (ENSEASG00005012745)	HSD17B11 (ENSEASG00005012747)	HSD17B13 (ENSEASG00005012750)	ENSEASG00005012752	KLHL8 (ENSEASG00005012755)	AFF1 (ENSEASG00005012760)	C4orf36 (ENSEASG00005038157)	SLC10A6 (ENSEASG00005029221)	PTPN13 (ENSEASG00005012776)	ENSEASG00005034628	MAPK10 (ENSEASG00005012811)	ARHGAP24 (ENSEASG00005013101)	WDFY3 (ENSEASG00005013124)	CDS1 (ENSEASG00005013203)	NKX6-1 (ENSEASG00005031030)
Horse	MODERN SPECIES	22	TIGD2 (ENSECAG00000018362)	FAM13A (ENSECAG00000019173)	ENSECAG00000052307	HERC3 (ENSECAG00000011129)	NAP1L5 (ENSECAG00000001741)	HERC5 (ENSECAG00000015395)	HERC6 (ENSECAG00000019411)	PPM1K (ENSECAG00000005000)	ABCG2 (ENSECAG00000009773)	PKD2 (ENSECAG00000024033)	SPP1 (ENSECAG00000017191)	MEPE (ENSECAG00000024351)	IBSP (ENSECAG00000024478)	DMP1 (ENSECAG00000004158)	DSPP (ENSECAG00000007608)	SPARCL1 (ENSECAG00000009280) ##22	NUDT9 (ENSECAG00000019556)	HSD17B11 (ENSECAG00000008173)	ENSECAG00000049673	ENSECAG00000053823	HSD17B13 (ENSECAG00000012765)	KLHL8 (ENSECAG00000017829)	ENSECAG00000050121	AFF1 (ENSECAG00000003619)	C3H4orf36 (ENSECAG00000012119)	SLC10A6 (ENSECAG00000012685)	PTPN13 (ENSECAG00000015663)	MAPK10 (ENSECAG00000017280)	ARHGAP24 (ENSECAG00000012825)	ENSECAG00000033662	ENSECAG00000046931
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00730000111564	ENSGT00940000158189	ENSGT00610000087446	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Primates	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000015889.j	ENSGT00610000087446	ENSGT00390000015889.i	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000015889.j	ENSGT00610000087446	ENSGT00390000015889.i	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.i	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000153112.A	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.i	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025	ENSGT00390000002509	ENSGT01020000230401.a.a.a.i.a.a	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000153112.A	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223
Pan	ANCESTRAL SPECIES	7	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889.i	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025	ENSGT00390000002509	ENSGT01020000230401.a.a.a.i.a.a	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000153112.A	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000160193	ENSGT00940000157266
Chimpanzee	MODERN SPECIES	17	FAM13A (ENSPTRG00000016278)	NAP1L5 (ENSPTRG00000016277)	HERC3 (ENSPTRG00000051169)	PYURF (ENSPTRG00000016275)	HERC5 (ENSPTRG00000016273)	HERC6 (ENSPTRG00000016272)	PPM1K (ENSPTRG00000016271)	ABCG2 (ENSPTRG00000016270)	PKD2 (ENSPTRG00000016267)	SPP1 (ENSPTRG00000016266)	ENSPTRG00000048010	MEPE (ENSPTRG00000016264)	IBSP (ENSPTRG00000016263)	DMP1 (ENSPTRG00000016262)	DSPP (ENSPTRG00000016261)	SPARCL1 (ENSPTRG00000016260) ##22	NUDT9 (ENSPTRG00000016259)	HSD17B11 (ENSPTRG00000022658)	HSD17B13 (ENSPTRG00000016258)	ENSPTRG00000046435	KLHL8 (ENSPTRG00000016256)	AFF1 (ENSPTRG00000016255)	ENSPTRG00000050251	C4H4orf36 (ENSPTRG00000016254)	ENSPTRG00000043177	SLC10A6 (ENSPTRG00000016253)	PTPN13 (ENSPTRG00000016249)	MAPK10 (ENSPTRG00000016244)	ARHGAP24 (ENSPTRG00000016243)	GABRG1 (ENSPTRG00000016024)	GABRA2 (ENSPTRG00000016026)
Bonobo	MODERN SPECIES	17	FAM13A (ENSPPAG00000001057)	ENSPPAG00000040579	HERC3 (ENSPPAG00000028738)	PYURF (ENSPPAG00000024990)	HERC5 (ENSPPAG00000029422)	HERC6 (ENSPPAG00000013440)	PPM1K (ENSPPAG00000042478)	ABCG2 (ENSPPAG00000024257)	ENSPPAG00000012455	PKD2 (ENSPPAG00000031097)	SPP1 (ENSPPAG00000040172)	ENSPPAG00000031090	MEPE (ENSPPAG00000041299)	IBSP (ENSPPAG00000038769)	DMP1 (ENSPPAG00000040896)	SPARCL1 (ENSPPAG00000033615) ##22	NUDT9 (ENSPPAG00000042541)	HSD17B11 (ENSPPAG00000013061)	HSD17B13 (ENSPPAG00000042548)	KLHL8 (ENSPPAG00000030051)	AFF1 (ENSPPAG00000029196)	ENSPPAG00000028030	C4orf36 (ENSPPAG00000043538)	ENSPPAG00000037218	SLC10A6 (ENSPPAG00000007271)	PTPN13 (ENSPPAG00000037012)	MAPK10 (ENSPPAG00000042829)	ARHGAP24 (ENSPPAG00000036857)	GABRG1 (ENSPPAG00000027800)	GABRA2 (ENSPPAG00000028343)	COX7B2 (ENSPPAG00000017844)
Human	MODERN SPECIES	16	NAP1L5 (ENSG00000177432)	HERC3 (ENSG00000138641)	HERC3 (ENSG00000287542)	PIGY (ENSG00000255072)	PYURF (ENSG00000145337)	HERC5 (ENSG00000138646)	HERC6 (ENSG00000138642)	PPM1K (ENSG00000163644)	ABCG2 (ENSG00000118777)	PKD2 (ENSG00000118762)	SPP1 (ENSG00000118785)	MEPE (ENSG00000152595)	IBSP (ENSG00000029559)	DMP1 (ENSG00000152592)	DSPP (ENSG00000152591)	SPARCL1 (ENSG00000152583) ##22	NUDT9 (ENSG00000170502)	HSD17B11 (ENSG00000198189)	HSD17B13 (ENSG00000170509)	KLHL8 (ENSG00000145332)	AFF1 (ENSG00000172493)	ENSG00000285458	C4orf36 (ENSG00000163633)	SLC10A6 (ENSG00000145283)	PTPN13 (ENSG00000163629)	MAPK10 (ENSG00000109339)	ARHGAP24 (ENSG00000138639)	WDFY3 (ENSG00000163625)	CDS1 (ENSG00000163624)	NKX6-1 (ENSG00000163623)	GPAT3 (ENSG00000138678)
Gorilla	MODERN SPECIES	17	FAM13A (ENSGGOG00000024484)	ENSGGOG00000023308	HERC3 (ENSGGOG00000009326)	PYURF (ENSGGOG00000028205)	HERC5 (ENSGGOG00000010944)	HERC6 (ENSGGOG00000010928)	PPM1K (ENSGGOG00000002763)	ENSGGOG00000002002	PKD2 (ENSGGOG00000003323)	SPP1 (ENSGGOG00000005577)	ENSGGOG00000006185	MEPE (ENSGGOG00000009745)	IBSP (ENSGGOG00000007024)	DMP1 (ENSGGOG00000026902)	DSPP (ENSGGOG00000024325)	SPARCL1 (ENSGGOG00000015425) ##22	NUDT9 (ENSGGOG00000014777)	HSD17B11 (ENSGGOG00000014710)	HSD17B13 (ENSGGOG00000002954)	ENSGGOG00000022570	KLHL8 (ENSGGOG00000014648)	AFF1 (ENSGGOG00000008497)	ENSGGOG00000037353	C4orf36 (ENSGGOG00000005547)	SLC10A6 (ENSGGOG00000007512)	PTPN13 (ENSGGOG00000025765)	MAPK10 (ENSGGOG00000003141)	ARHGAP24 (ENSGGOG00000006266)	WDFY3 (ENSGGOG00000006370)	CDS1 (ENSGGOG00000002418)	NKX6-1 (ENSGGOG00000008459)
Orangutan	MODERN SPECIES	17	GPRIN3 (ENSPPYG00000014931)	TIGD2 (ENSPPYG00000014930)	FAM13A (ENSPPYG00000014928)	NAP1L5 (ENSPPYG00000038351)	HERC3 (ENSPPYG00000014927)	ENSPPYG00000014926	HERC5 (ENSPPYG00000014925)	HERC6 (ENSPPYG00000014924)	PPM1K (ENSPPYG00000038477)	ENSPPYG00000014922	PKD2 (ENSPPYG00000014921)	SPP1 (ENSPPYG00000037006)	MEPE (ENSPPYG00000014919)	IBSP (ENSPPYG00000014918)	DMP1 (ENSPPYG00000014917)	SPARCL1 (ENSPPYG00000014915) ##22	NUDT9 (ENSPPYG00000014914)	HSD17B11 (ENSPPYG00000014913)	HSD17B13 (ENSPPYG00000014912)	ENSPPYG00000039765	KLHL8 (ENSPPYG00000014911)	AFF1 (ENSPPYG00000014910)	C4orf36 (ENSPPYG00000014909)	SLC10A6 (ENSPPYG00000040769)	PTPN13 (ENSPPYG00000014908)	MAPK10 (ENSPPYG00000014907)	ARHGAP24 (ENSPPYG00000014906)	WDFY3 (ENSPPYG00000014903)	CDS1 (ENSPPYG00000014902)	NKX6-1 (ENSPPYG00000014901)	GPAT3 (ENSPPYG00000014900)
Gibbon	MODERN SPECIES	24	ENSNLEG00000018566	HERC3 (ENSNLEG00000009752)	ENSNLEG00000009750	PIGY (ENSNLEG00000018565)	HERC5 (ENSNLEG00000009725)	HERC6 (ENSNLEG00000009683)	PPM1K (ENSNLEG00000009677)	ENSNLEG00000009615	PKD2 (ENSNLEG00000009602)	SPP1 (ENSNLEG00000009599)	ENSNLEG00000032534	MEPE (ENSNLEG00000009593)	IBSP (ENSNLEG00000009587)	DMP1 (ENSNLEG00000009581)	DSPP (ENSNLEG00000009572)	SPARCL1 (ENSNLEG00000009544) ##22	NUDT9 (ENSNLEG00000032434)	HSD17B11 (ENSNLEG00000033296)	HSD17B13 (ENSNLEG00000009489)	KLHL8 (ENSNLEG00000009463)	AFF1 (ENSNLEG00000009429)	ENSNLEG00000027926	C4orf36 (ENSNLEG00000030589)	ENSNLEG00000033518	SLC10A6 (ENSNLEG00000009412)	PTPN13 (ENSNLEG00000009323)	MAPK10 (ENSNLEG00000009285)	ARHGAP24 (ENSNLEG00000009269)	WDFY3 (ENSNLEG00000009171)	CDS1 (ENSNLEG00000009160)	ENSNLEG00000028024
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a	ENSGT00940000153593.c.b.e	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000153593.c.b.e	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000154826.nb.a.a	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000153593.c.b.e	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000154826.nb.a.a	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Macaca	ANCESTRAL SPECIES	18	ENSGT00950000183033.a.b.a	ENSGT00940000153593.c.b.e	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT01100000263539.b.b.b.b.a.a.b.a.a.a	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000155133.b.i	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000156935	ENSGT00390000014817	ENSGT00390000008110	ENSGT00390000013532
Crab-eating macaque	MODERN SPECIES	15	FAM13A (ENSMFAG00000033016)	ENSMFAG00000048227	HERC3 (ENSMFAG00000031659)	HERC5 (ENSMFAG00000045729)	HERC6 (ENSMFAG00000040004)	PPM1K (ENSMFAG00000030885)	PYURF (ENSMFAG00000002664)	ENSMFAG00000042464	ENSMFAG00000053787	ENSMFAG00000043652	SPP1 (ENSMFAG00000038158)	ENSMFAG00000063129	MEPE (ENSMFAG00000042632)	IBSP (ENSMFAG00000029098)	DMP1 (ENSMFAG00000002413)	SPARCL1 (ENSMFAG00000031337) ##22	NUDT9 (ENSMFAG00000002084)	HSD17B11 (ENSMFAG00000038343)	HSD17B13 (ENSMFAG00000040860)	KLHL8 (ENSMFAG00000041071)	AFF1 (ENSMFAG00000037700)	ENSMFAG00000061398	C4orf36 (ENSMFAG00000049033)	SLC10A6 (ENSMFAG00000003336)	PTPN13 (ENSMFAG00000001116)	ENSMFAG00000057457	MAPK10 (ENSMFAG00000001537)	ENSMFAG00000065494	ARHGAP24 (ENSMFAG00000032831)	DCUN1D4 (ENSMFAG00000003049)	LRRC66 (ENSMFAG00000035332)
Rhesus	MODERN SPECIES	15	FAM13A (ENSMMUG00000010141)	NAP1L5 (ENSMMUG00000058544)	HERC3 (ENSMMUG00000010138)	PIGY (ENSMMUG00000010318)	HERC5 (ENSMMUG00000010316)	HERC6 (ENSMMUG00000010314)	ENSMMUG00000062799	PPM1K (ENSMMUG00000004561)	ABCG2 (ENSMMUG00000008797)	PKD2 (ENSMMUG00000008795)	SPP1 (ENSMMUG00000008793)	ENSMMUG00000058934	MEPE (ENSMMUG00000011110)	IBSP (ENSMMUG00000011111)	DMP1 (ENSMMUG00000011114)	SPARCL1 (ENSMMUG00000019047) ##22	NUDT9 (ENSMMUG00000019043)	HSD17B11 (ENSMMUG00000019041)	HSD17B13 (ENSMMUG00000019040)	KLHL8 (ENSMMUG00000014080)	ENSMMUG00000051677	AFF1 (ENSMMUG00000014076)	C5H4orf36 (ENSMMUG00000059657)	SLC10A6 (ENSMMUG00000003734)	PTPN13 (ENSMMUG00000003726)	ENSMMUG00000063428	MAPK10 (ENSMMUG00000008342)	ARHGAP24 (ENSMMUG00000008341)	ENSMMUG00000051109	DCUN1D4 (ENSMMUG00000008579)	LRRC66 (ENSMMUG00000018939)
Pig-tailed macaque	MODERN SPECIES	560	FAM13A (ENSMNEG00000034375)	ENSMNEG00000019048	HERC3 (ENSMNEG00000045189)	NAP1L5 (ENSMNEG00000042035)	PYURF (ENSMNEG00000040100)	HERC5 (ENSMNEG00000040366)	HERC6 (ENSMNEG00000043508)	PPM1K (ENSMNEG00000039204)	ENSMNEG00000035519	PKD2 (ENSMNEG00000029251)	SPP1 (ENSMNEG00000043112)	MEPE (ENSMNEG00000025404)	IBSP (ENSMNEG00000041631)	DMP1 (ENSMNEG00000031482)	DSPP (ENSMNEG00000028809)	SPARCL1 (ENSMNEG00000028043) ##22	NUDT9 (ENSMNEG00000033450)	HSD17B11 (ENSMNEG00000029758)	HSD17B13 (ENSMNEG00000043671)	KLHL8 (ENSMNEG00000030082)	AFF1 (ENSMNEG00000031536)	C4orf36 (ENSMNEG00000029673)	SLC10A6 (ENSMNEG00000040873)	PTPN13 (ENSMNEG00000030866)	MAPK10 (ENSMNEG00000043177)	ARHGAP24 (ENSMNEG00000007102)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000154826.nb.a.a	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.o	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Olive baboon	MODERN SPECIES	13	ENSPANG00000011877	FAM13A (ENSPANG00000018305)	NAP1L5 (ENSPANG00000000430)	HERC3 (ENSPANG00000011209)	PYURF (ENSPANG00000041123)	HERC5 (ENSPANG00000014742)	HERC6 (ENSPANG00000021686)	PPM1K (ENSPANG00000017893)	ENSPANG00000045201	PKD2 (ENSPANG00000008259)	ENSPANG00000019860	SPP1 (ENSPANG00000017630)	MEPE (ENSPANG00000019861)	IBSP (ENSPANG00000008567)	DMP1 (ENSPANG00000014206)	SPARCL1 (ENSPANG00000014207) ##22	NUDT9 (ENSPANG00000012884)	ENSPANG00000050649	ENSPANG00000050843	HSD17B11 (ENSPANG00000011210)	HSD17B13 (ENSPANG00000007692)	KLHL8 (ENSPANG00000011211)	AFF1 (ENSPANG00000016722)	C4orf36 (ENSPANG00000047799)	SLC10A6 (ENSPANG00000008483)	PTPN13 (ENSPANG00000016948)	MAPK10 (ENSPANG00000021440)	ARHGAP24 (ENSPANG00000008484)	ENSPANG00000038403	WDFY3 (ENSPANG00000022290)	ENSPANG00000020530
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b.j	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223.o	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Drill	MODERN SPECIES	1048			FAM13A (ENSMLEG00000001517)	HERC3 (ENSMLEG00000034801)	NAP1L5 (ENSMLEG00000042654)	PYURF (ENSMLEG00000043013)	HERC5 (ENSMLEG00000041218)	HERC6 (ENSMLEG00000038794)	PPM1K (ENSMLEG00000033146)	ENSMLEG00000031872	ENSMLEG00000038448	SPP1 (ENSMLEG00000029827)	MEPE (ENSMLEG00000032058)	IBSP (ENSMLEG00000028238)	DMP1 (ENSMLEG00000043383)	SPARCL1 (ENSMLEG00000035957) ##22	NUDT9 (ENSMLEG00000039145)	HSD17B11 (ENSMLEG00000038541)	HSD17B13 (ENSMLEG00000037103)	KLHL8 (ENSMLEG00000030301)	AFF1 (ENSMLEG00000039099)	C4orf36 (ENSMLEG00000026188)	SLC10A6 (ENSMLEG00000000063)	PTPN13 (ENSMLEG00000028941)
Sooty mangabey	MODERN SPECIES	507	FAM13A (ENSCATG00000040672)	ENSCATG00000019340	HERC3 (ENSCATG00000018920)	NAP1L5 (ENSCATG00000039043)	PYURF (ENSCATG00000043821)	HERC5 (ENSCATG00000038271)	HERC6 (ENSCATG00000045034)	PPM1K (ENSCATG00000041000)	ENSCATG00000037267	PKD2 (ENSCATG00000043739)	SPP1 (ENSCATG00000036269)	MEPE (ENSCATG00000042357)	IBSP (ENSCATG00000040962)	DMP1 (ENSCATG00000035040)	DSPP (ENSCATG00000039736)	SPARCL1 (ENSCATG00000045171) ##22	NUDT9 (ENSCATG00000040205)	HSD17B11 (ENSCATG00000040665)	HSD17B13 (ENSCATG00000025627)	KLHL8 (ENSCATG00000039730)	AFF1 (ENSCATG00000039501)	C4orf36 (ENSCATG00000036591)	SLC10A6 (ENSCATG00000032176)	PTPN13 (ENSCATG00000017113)	MAPK10 (ENSCATG00000043627)	ARHGAP24 (ENSCATG00000038010)	ENSCATG00000004763	WDFY3 (ENSCATG00000028669)	CDS1 (ENSCATG00000037354)	NKX6-1 (ENSCATG00000020976)	GPAT3 (ENSCATG00000031129)
Vervet Monkey	MODERN SPECIES	26	TIGD2 (ENSCSAG00000000410)	FAM13A (ENSCSAG00000004234)	NAP1L5 (ENSCSAG00000000411)	HERC3 (ENSCSAG00000004279)	PYURF (ENSCSAG00000004289)	HERC5 (ENSCSAG00000004292)	HERC6 (ENSCSAG00000004295)	PPM1K (ENSCSAG00000004297)	ENSCSAG00000000412	ENSCSAG00000004301	PKD2 (ENSCSAG00000004305)	SPP1 (ENSCSAG00000004308)	MEPE (ENSCSAG00000004309)	IBSP (ENSCSAG00000004313)	DMP1 (ENSCSAG00000004318)	SPARCL1 (ENSCSAG00000004320) ##22	NUDT9 (ENSCSAG00000004323)	HSD17B11 (ENSCSAG00000004327)	HSD17B13 (ENSCSAG00000004328)	KLHL8 (ENSCSAG00000004331)	AFF1 (ENSCSAG00000004333)	C4orf36 (ENSCSAG00000004334)	SLC10A6 (ENSCSAG00000004337)	PTPN13 (ENSCSAG00000004340)	ENSCSAG00000000413	MAPK10 (ENSCSAG00000004343)	ARHGAP24 (ENSCSAG00000004344)	ENSCSAG00000004347	WDFY3 (ENSCSAG00000004361)	CDS1 (ENSCSAG00000004368)	NKX6-1 (ENSCSAG00000004373)
Rhinopithecus	ANCESTRAL SPECIES	390												ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000154351.k.b.a.a	ENSGT00940000155133.b
Black snub-nosed monkey	MODERN SPECIES	196												MEPE (ENSRBIG00000040929)	IBSP (ENSRBIG00000034976)	DMP1 (ENSRBIG00000026541)	DSPP (ENSRBIG00000035721)	SPARCL1 (ENSRBIG00000029051) ##22	NUDT9 (ENSRBIG00000032559)	HSD17B11 (ENSRBIG00000041793)
Golden snub-nosed monkey	MODERN SPECIES	2401														DMP1 (ENSRROG00000040143)	ENSRROG00000038954	SPARCL1 (ENSRROG00000030085) ##22	NUDT9 (ENSRROG00000039332)	HSD17B11 (ENSRROG00000033725)	HSD17B13 (ENSRROG00000029372)	KLHL8 (ENSRROG00000045332)	AFF1 (ENSRROG00000045716)	ENSRROG00000043938	C4orf36 (ENSRROG00000042196)	SLC10A6 (ENSRROG00000024030)	PTPN13 (ENSRROG00000028522)	ENSRROG00000031297	ENSRROG00000043961
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000153675.a.a.b.e.b	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00730000111564	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000153675.a.a.b.e.b	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00950000183175.B.b	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000153675.a.a.b.e.b	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Capuchin	MODERN SPECIES	177		TIGD2 (ENSCCAG00000005186)	FAM13A (ENSCCAG00000038125)	HERC3 (ENSCCAG00000027581)	PYURF (ENSCCAG00000025549)	HERC5 (ENSCCAG00000019767)	HERC6 (ENSCCAG00000035110)	PPM1K (ENSCCAG00000033821)	ENSCCAG00000029905	PKD2 (ENSCCAG00000033897)	SPP1 (ENSCCAG00000033672)	MEPE (ENSCCAG00000036917)	IBSP (ENSCCAG00000029190)	DMP1 (ENSCCAG00000021738)	DSPP (ENSCCAG00000026109)	SPARCL1 (ENSCCAG00000028187) ##22	NUDT9 (ENSCCAG00000030376)	ENSCCAG00000005825	HSD17B11 (ENSCCAG00000016570)	HSD17B13 (ENSCCAG00000027281)	KLHL8 (ENSCCAG00000019808)	AFF1 (ENSCCAG00000027623)	C4orf36 (ENSCCAG00000029092)	SLC10A6 (ENSCCAG00000034275)	PTPN13 (ENSCCAG00000028694)	MAPK10 (ENSCCAG00000020883)	ARHGAP24 (ENSCCAG00000024836)
Bolivian squirrel monkey	MODERN SPECIES	51	FAM13A (ENSSBOG00000022461)	HERC3 (ENSSBOG00000023004)	ENSSBOG00000028700	PYURF (ENSSBOG00000022328)	HERC5 (ENSSBOG00000036207)	HERC6 (ENSSBOG00000031841)	PPM1K (ENSSBOG00000023972)	ENSSBOG00000028929	PKD2 (ENSSBOG00000022615)	SPP1 (ENSSBOG00000019758)	ENSSBOG00000012030	MEPE (ENSSBOG00000031405)	IBSP (ENSSBOG00000031488)	DMP1 (ENSSBOG00000027395)	DSPP (ENSSBOG00000025289)	SPARCL1 (ENSSBOG00000027855) ##22	HSD17B11 (ENSSBOG00000034492)	HSD17B13 (ENSSBOG00000023206)	KLHL8 (ENSSBOG00000021069)	AFF1 (ENSSBOG00000035401)	C4orf36 (ENSSBOG00000035411)	SLC10A6 (ENSSBOG00000035397)	ENSSBOG00000025416	PTPN13 (ENSSBOG00000034136)	ENSSBOG00000021152	MAPK10 (ENSSBOG00000029248)	ARHGAP24 (ENSSBOG00000036059)	WDFY3 (ENSSBOG00000026656)	CDS1 (ENSSBOG00000025353)	NKX6-1 (ENSSBOG00000032034)	GPAT3 (ENSSBOG00000033661)
Marmoset	MODERN SPECIES	15	GPRIN3 (ENSCJAG00000022026)	FAM13A (ENSCJAG00000006632)	HERC3 (ENSCJAG00000006525)	NAP1L5 (ENSCJAG00000068187)	PYURF (ENSCJAG00000081652)	HERC5 (ENSCJAG00000006474)	HERC6 (ENSCJAG00000006441)	PPM1K (ENSCJAG00000006428)	ENSCJAG00000006370	PKD2 (ENSCJAG00000006321)	SPP1 (ENSCJAG00000006299)	MEPE (ENSCJAG00000006293)	IBSP (ENSCJAG00000006284)	DMP1 (ENSCJAG00000006215)	DSPP (ENSCJAG00000040393)	SPARCL1 (ENSCJAG00000006192) ##22	NUDT9 (ENSCJAG00000006159)	HSD17B11 (ENSCJAG00000006150)	HSD17B13 (ENSCJAG00000006120)	ENSCJAG00000070202	KLHL8 (ENSCJAG00000006088)	AFF1 (ENSCJAG00000006047)	ENSCJAG00000083232	ENSCJAG00000078087	ENSCJAG00000075317	C4orf36 (ENSCJAG00000070848)	SLC10A6 (ENSCJAG00000006010)	ENSCJAG00000077823	PTPN13 (ENSCJAG00000005723)	MAPK10 (ENSCJAG00000005621)	ARHGAP24 (ENSCJAG00000005600)
Mas night monkey	MODERN SPECIES	674	FAM13A (ENSANAG00000031344)	HERC3 (ENSANAG00000022838)	NAP1L5 (ENSANAG00000007129)	PYURF (ENSANAG00000029857)	PIGY (ENSANAG00000009282)	HERC5 (ENSANAG00000024422)	HERC6 (ENSANAG00000028341)	PPM1K (ENSANAG00000022825)	ENSANAG00000030638	PKD2 (ENSANAG00000029381)	SPP1 (ENSANAG00000034840)	MEPE (ENSANAG00000031783)	IBSP (ENSANAG00000037860)	DMP1 (ENSANAG00000035613)	DSPP (ENSANAG00000038291)	SPARCL1 (ENSANAG00000037502) ##22	NUDT9 (ENSANAG00000027203)	ENSANAG00000019492	HSD17B11 (ENSANAG00000032652)	HSD17B13 (ENSANAG00000038096)	KLHL8 (ENSANAG00000028175)	ENSANAG00000034267	AFF1 (ENSANAG00000017095)	C4orf36 (ENSANAG00000015388)	ENSANAG00000011451	SLC10A6 (ENSANAG00000019632)	PTPN13 (ENSANAG00000033639)	ENSANAG00000026989	MAPK10 (ENSANAG00000016888)	ENSANAG00000022867	ENSANAG00000028685
Tarsier	MODERN SPECIES	6665												MEPE (ENSTSYG00000032520)	IBSP (ENSTSYG00000031045)	DMP1 (ENSTSYG00000035202)	DSPP (ENSTSYG00000028838)	SPARCL1 (ENSTSYG00000009223) ##22	NUDT9 (ENSTSYG00000009191)	HSD17B11 (ENSTSYG00000005711)
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00950000183033.a.b.a	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509.a	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f
Lemuriformes	ANCESTRAL SPECIES	52	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446.o	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509.a	ENSGT00390000002509.b	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f
Mouse lemur	MODERN SPECIES	21	ENSMICG00000005634	GPRIN3 (ENSMICG00000036743)	FAM13A (ENSMICG00000004166)	NAP1L5 (ENSMICG00000030185)	HERC3 (ENSMICG00000004118)	PYURF (ENSMICG00000038671)	ENSMICG00000027712	ENSMICG00000045611	ENSMICG00000003935	ENSMICG00000047698	SPP1 (ENSMICG00000042086)	MEPE (ENSMICG00000015496)	IBSP (ENSMICG00000042390)	ENSMICG00000046330	DSPP (ENSMICG00000031483)	SPARCL1 (ENSMICG00000026718) ##22	NUDT9 (ENSMICG00000046445)	HSD17B11 (ENSMICG00000001078)	HSD17B13 (ENSMICG00000008918)	KLHL8 (ENSMICG00000006479)	ENSMICG00000033298	ENSMICG00000038573	ENSMICG00000041648	TRIM7 (ENSMICG00000028707)	ENSMICG00000032858	RACK1 (ENSMICG00000014201)	TRIM52 (ENSMICG00000043353)	ZNF354B (ENSMICG00000035274)	PROP1 (ENSMICG00000027568)	FRMD4B (ENSMICG00000045910)	ENSMICG00000046450
Lemuriformes_a	ANCESTRAL SPECIES	64	ENSGT00730000111564	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446.o	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509.a	ENSGT00390000002509.b	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f
Greater bamboo lemur	MODERN SPECIES	64			CCSER1 (ENSPSMG00000016313)	ENSPSMG00000016319	PPM1K (ENSPSMG00000016350)	ABCG2 (ENSPSMG00000016426)	ENSPSMG00000016441	PKD2 (ENSPSMG00000016463)	ENSPSMG00000016471	ENSPSMG00000016478	MEPE (ENSPSMG00000016484)	ENSPSMG00000016488	IBSP (ENSPSMG00000016491)	DMP1 (ENSPSMG00000016501)	DSPP (ENSPSMG00000016539)	SPARCL1 (ENSPSMG00000016553) ##22	NUDT9 (ENSPSMG00000016567)	HSD17B11 (ENSPSMG00000016611)	HSD17B13 (ENSPSMG00000016633)	KLHL8 (ENSPSMG00000016695)	AFF1 (ENSPSMG00000016833)	C4orf36 (ENSPSMG00000016893)	SLC10A6 (ENSPSMG00000016898)	PTPN13 (ENSPSMG00000017328)	MAPK10 (ENSPSMG00000017774)	ENSPSMG00000017824	ARHGAP24 (ENSPSMG00000017866)	ENSPSMG00000017913	WDFY3 (ENSPSMG00000018028)	CDS1 (ENSPSMG00000018082)	NKX6-1 (ENSPSMG00000018100)
Coquerels sifaka	MODERN SPECIES	371	CCSER1 (ENSPCOG00000017946)	MMRN1 (ENSPCOG00000017828)	SNCA (ENSPCOG00000021411)	FAM13A (ENSPCOG00000013790)	HERC3 (ENSPCOG00000019350)	PYURF (ENSPCOG00000016509)	HERC5 (ENSPCOG00000021926)	ENSPCOG00000016223	PPM1K (ENSPCOG00000027984)	ENSPCOG00000020069	PKD2 (ENSPCOG00000019291)	SPP1 (ENSPCOG00000006026)	MEPE (ENSPCOG00000028720)	IBSP (ENSPCOG00000018630)	DMP1 (ENSPCOG00000023727)	SPARCL1 (ENSPCOG00000023448) ##22	NUDT9 (ENSPCOG00000028049)	HSD17B11 (ENSPCOG00000024521)	ENSPCOG00000003550	HSD17B13 (ENSPCOG00000016156)	KLHL8 (ENSPCOG00000018983)	AFF1 (ENSPCOG00000027339)	C4orf36 (ENSPCOG00000023888)	SLC10A6 (ENSPCOG00000026098)	PTPN13 (ENSPCOG00000023990)	ENSPCOG00000017982	MAPK10 (ENSPCOG00000023059)	ARHGAP24 (ENSPCOG00000000502)	WDFY3 (ENSPCOG00000022708)	CDS1 (ENSPCOG00000017585)	NKX6-1 (ENSPCOG00000026560)
Bushbaby	MODERN SPECIES	154	FAM13A (ENSOGAG00000003314)	HERC3 (ENSOGAG00000003310)	NAP1L5 (ENSOGAG00000006132)	PYURF (ENSOGAG00000002822)	PIGY (ENSOGAG00000025258)	HERC5 (ENSOGAG00000017226)	HERC6 (ENSOGAG00000017223)	PPM1K (ENSOGAG00000017222)	ENSOGAG00000017221	PKD2 (ENSOGAG00000011193)	SPP1 (ENSOGAG00000011188)	MEPE (ENSOGAG00000011187)	IBSP (ENSOGAG00000011181)	DMP1 (ENSOGAG00000032756)	DSPP (ENSOGAG00000030776)	SPARCL1 (ENSOGAG00000009645) ##22	NUDT9 (ENSOGAG00000009642)	HSD17B11 (ENSOGAG00000009636)	HSD17B13 (ENSOGAG00000009634)	KLHL8 (ENSOGAG00000009630)	ENSOGAG00000031299	ENSOGAG00000009622	SLC10A6 (ENSOGAG00000004425)	ENSOGAG00000030382	ENSOGAG00000027610	MAPK10 (ENSOGAG00000014897)	ARHGAP24 (ENSOGAG00000014895)	ENSOGAG00000015396	CDS1 (ENSOGAG00000032846)	NKX6-1 (ENSOGAG00000000028)	GPAT3 (ENSOGAG00000003516)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00730000111564	ENSGT00940000158189	ENSGT00610000087446	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Tree shrew	MODERN SPECIES	3869																SPARCL1 (ENSTBEG00000009791) ##22	NUDT9 (ENSTBEG00000009678)	HSD17B11 (ENSTBEG00000017604)	HSD17B13 (ENSTBEG00000017515)
Glires	ANCESTRAL SPECIES	8	ENSGT00730000111564	ENSGT00940000158189	ENSGT00610000087446	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Lagomorpha	ANCESTRAL SPECIES	129						ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157350	ENSGT00390000003791	ENSGT00530000063424.b	ENSGT01030000234574.B.c.a	ENSGT00940000160897	ENSGT00940000158223	ENSGT00940000155680.d	ENSGT00950000183015.D	ENSGT00940000153692.A	ENSGT00940000155133.b	ENSGT00950000182808.a.a.a.a.b	ENSGT00390000015549
Rabbit	MODERN SPECIES	6	ENSOCUG00000015872	ENSOCUG00000037061	HERC6 (ENSOCUG00000029688)	PPM1K (ENSOCUG00000003452)	ENSOCUG00000011389	ENSOCUG00000031046	ENSOCUG00000037789	PKD2 (ENSOCUG00000002396)	SPP1 (ENSOCUG00000022536)	MEPE (ENSOCUG00000001850)	ENSOCUG00000037120	IBSP (ENSOCUG00000001046)	DMP1 (ENSOCUG00000011753)	ENSOCUG00000032976	ENSOCUG00000022074	SPARCL1 (ENSOCUG00000006131) ##22	NUDT9 (ENSOCUG00000002670)	HSD17B11 (ENSOCUG00000007237)	HSD17B13 (ENSOCUG00000007232)	ENSOCUG00000035440	HELQ (ENSOCUG00000013294)	ENSOCUG00000031430	ABRAXAS1 (ENSOCUG00000013327)	ENSOCUG00000034356	GPAT3 (ENSOCUG00000012071)	ENSOCUG00000030881	ENSOCUG00000027309	ENSOCUG00000034961	NKX6-1 (ENSOCUG00000028183)	CDS1 (ENSOCUG00000017147)	WDFY3 (ENSOCUG00000017155)
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000158189	ENSGT00610000087446	ENSGT00390000015889	ENSGT00940000162703	ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Rodentia_A	ANCESTRAL SPECIES	20									ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hystricomorpha	ANCESTRAL SPECIES	61	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000160368	ENSGT00390000011365.b.f ##20	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hystricomorpha_a	ANCESTRAL SPECIES	68	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000160368	ENSGT00390000011365.b.f ##20	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000160368	ENSGT00390000011365.b.f ##20	ENSGT00390000017018.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Long-tailed chinchilla	MODERN SPECIES	181	AREG (ENSCLAG00000005654)	BTC (ENSCLAG00000005737)	PARM1 (ENSCLAG00000005786)	ENSCLAG00000006211	RCHY1 (ENSCLAG00000006290)	THAP6 (ENSCLAG00000002864)	ODAPH (ENSCLAG00000002892)	CDKL2 (ENSCLAG00000002974)	G3BP2 (ENSCLAG00000003285) ##20	USO1 (ENSCLAG00000003502)	ENSCLAG00000003868	PKD2 (ENSCLAG00000003929)	SPP1 (ENSCLAG00000004133)	IBSP (ENSCLAG00000004300)	DMP1 (ENSCLAG00000004368)	SPARCL1 (ENSCLAG00000004209) ##22	ENSCLAG00000004292	NUDT9 (ENSCLAG00000004808)	HSD17B11 (ENSCLAG00000004877)	HSD17B13 (ENSCLAG00000004944)	KLHL8 (ENSCLAG00000005233)	AFF1 (ENSCLAG00000005537)	C4orf36 (ENSCLAG00000005964)	SLC10A6 (ENSCLAG00000006091)	PTPN13 (ENSCLAG00000006187)	MAPK10 (ENSCLAG00000007752)	ARHGAP24 (ENSCLAG00000004468)	WDFY3 (ENSCLAG00000004977)	CDS1 (ENSCLAG00000006900)	GPAT3 (ENSCLAG00000007713)	ABRAXAS1 (ENSCLAG00000008039)
Degu	MODERN SPECIES	69	PARM1 (ENSODEG00000006846)	RCHY1 (ENSODEG00000010052)	ENSODEG00000007180	ENSODEG00000006617	CDKL2 (ENSODEG00000007091)	ENSODEG00000006601 ##20	USO1 (ENSODEG00000007153)	ENSODEG00000007348	PPEF2 (ENSODEG00000007849)	PKD2 (ENSODEG00000007292)	SPP1 (ENSODEG00000007013)	ENSODEG00000006542	IBSP (ENSODEG00000008571)	ENSODEG00000008931	DMP1 (ENSODEG00000007123)	SPARCL1 (ENSODEG00000008441) ##22	ENSODEG00000007537	ENSODEG00000019391	HSD17B11 (ENSODEG00000007389)	HSD17B13 (ENSODEG00000008266)	ENSODEG00000006945	ENSODEG00000007146	AFF1 (ENSODEG00000007407)	C4orf36 (ENSODEG00000007345)	SLC10A6 (ENSODEG00000011019)	PTPN13 (ENSODEG00000007351)	ENSODEG00000019627	ENSODEG00000009245	ENSODEG00000007996	ENSODEG00000008176	ENSODEG00000019462
Guinea pig	MODERN SPECIES	33								CDKL2 (ENSCPOG00000000399)	G3BP2 (ENSCPOG00000012052) ##20	USO1 (ENSCPOG00000012058)	PPEF2 (ENSCPOG00000007202)	PKD2 (ENSCPOG00000014588)	SPP1 (ENSCPOG00000014587)	IBSP (ENSCPOG00000035416)	DMP1 (ENSCPOG00000009517)	SPARCL1 (ENSCPOG00000001455) ##22	NUDT9 (ENSCPOG00000009689)	HSD17B11 (ENSCPOG00000038248)	HSD17B13 (ENSCPOG00000014141)	KLHL8 (ENSCPOG00000001491)	AFF1 (ENSCPOG00000034568)	ENSCPOG00000024866	C4orf36 (ENSCPOG00000003504)	SLC10A6 (ENSCPOG00000010363)	PTPN13 (ENSCPOG00000007122)	MAPK10 (ENSCPOG00000013605)	ARHGAP24 (ENSCPOG00000012796)	WDFY3 (ENSCPOG00000006746)	CDS1 (ENSCPOG00000030064)	GPAT3 (ENSCPOG00000014802)	ABRAXAS1 (ENSCPOG00000001374)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000017025	THAP6 (ENSHGLG00000043261)	ENSHGLG00000013662	CDKL2 (ENSHGLG00000013277)	G3BP2 (ENSHGLG00000043631) ##20	USO1 (ENSHGLG00000014182)	ENSHGLG00000014204	ENSHGLG00000010362	ENSHGLG00000009525	ENSHGLG00000012710	SPP1 (ENSHGLG00000012567)	MEPE (ENSHGLG00000049259)	IBSP (ENSHGLG00000011597)	DMP1 (ENSHGLG00000047355)	ENSHGLG00000041536	SPARCL1 (ENSHGLG00000011108) ##22	ENSHGLG00000010648	NUDT9 (ENSHGLG00000010306)	HSD17B11 (ENSHGLG00000009549)	ENSHGLG00000008840	ENSHGLG00000008487	ENSHGLG00000032120	ENSHGLG00000008155	AFF1 (ENSHGLG00000001384)	ENSHGLG00000045541	ENSHGLG00000001308	SLC10A6 (ENSHGLG00000001287)	ENSHGLG00000001145	ENSHGLG00000005605	ENSHGLG00000019806	ENSHGLG00000034553
Sciuridae	ANCESTRAL SPECIES	19									ENSGT00940000160729.h.c.a	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Marmotini	ANCESTRAL SPECIES	47									ENSGT00940000160729.h.c.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Marmotini_b	ANCESTRAL SPECIES	252									ENSGT00940000160729.h.c.a.b	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112
Squirrel	MODERN SPECIES	501										ENSSTOG00000000345	ENSSTOG00000003921	SPP1 (ENSSTOG00000020566)	IBSP (ENSSTOG00000001433)	DMP1 (ENSSTOG00000024087)	DSPP (ENSSTOG00000026093)	SPARCL1 (ENSSTOG00000015113) ##22	ENSSTOG00000033468	NUDT9 (ENSSTOG00000015105)
Arctic ground squirrel	MODERN SPECIES	688								PKD2 (ENSUPAG00010003807)	SPP1 (ENSUPAG00010003822)	MEPE (ENSUPAG00010003873)	IBSP (ENSUPAG00010003876)	ENSUPAG00010003887	DMP1 (ENSUPAG00010003903)	DSPP (ENSUPAG00010003914)	NUDT9 (ENSUPAG00010003929)	SPARCL1 (ENSUPAG00010003943) ##22	ENSUPAG00010003970	ENSUPAG00010003988
Alpin marmot	MODERN SPECIES	59	PARM1 (ENSMMMG00000006960)	BTC (ENSMMMG00000006965)	AREG (ENSMMMG00000006974)	EREG (ENSMMMG00000006986)	EPGN (ENSMMMG00000006994)	MTHFD2L (ENSMMMG00000007011)	ENSMMMG00000007039	ENSMMMG00000007047	PKD2 (ENSMMMG00000007053)	SPP1 (ENSMMMG00000007069)	MEPE (ENSMMMG00000007106)	IBSP (ENSMMMG00000007115)	ENSMMMG00000007131	DMP1 (ENSMMMG00000007142)	DSPP (ENSMMMG00000007171)	ENSMMMG00000007183 ##22	ENSMMMG00000007192	NUDT9 (ENSMMMG00000007237)	ENSMMMG00000007336	HSD17B13 (ENSMMMG00000007353)	KLHL8 (ENSMMMG00000007382)	AFF1 (ENSMMMG00000007447)	C4orf36 (ENSMMMG00000007592)	SLC10A6 (ENSMMMG00000007611)	PTPN13 (ENSMMMG00000007644)
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005011669	ENSSVLG00005011933	ENSSVLG00005011981	ENSSVLG00005012160	ENSSVLG00005012281	ENSSVLG00005012923	PPM1K (ENSSVLG00005013073)	ENSSVLG00005013226	ENSSVLG00005013446	PKD2 (ENSSVLG00005013606)	SPP1 (ENSSVLG00005013941)	MEPE (ENSSVLG00005014128)	IBSP (ENSSVLG00005014230)	DMP1 (ENSSVLG00005014323)	DSPP (ENSSVLG00005014439)	SPARCL1 (ENSSVLG00005014496) ##22	NUDT9 (ENSSVLG00005014673)	HSD17B11 (ENSSVLG00005014755)	HSD17B13 (ENSSVLG00005014916)	ENSSVLG00005015085	ENSSVLG00005015156	AFF1 (ENSSVLG00005015438)	C4orf36 (ENSSVLG00005015848)	SLC10A6 (ENSSVLG00005015893)	PTPN13 (ENSSVLG00005016102)	MAPK10 (ENSSVLG00005018125)	ARHGAP24 (ENSSVLG00005018879)	WDFY3 (ENSSVLG00005019113)	CDS1 (ENSSVLG00005019388)	NKX6-1 (ENSSVLG00005019440)	ENSSVLG00005019498
Rodentia_B	ANCESTRAL SPECIES	19					ENSGT00940000162279	ENSGT00960000190929	ENSGT00940000156633	ENSGT00940000160729.g	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00900000143450	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Kangaroo rat	MODERN SPECIES	442				Ptpn13 (ENSDORG00000009744)	Slc10a6 (ENSDORG00000005191)	ENSDORG00000026599	1700016H13Rik (ENSDORG00000029011)	Aff1 (ENSDORG00000013881)	ENSDORG00000028863	ENSDORG00000024277	Hsd17b13 (ENSDORG00000024644)	Hsd17b11 (ENSDORG00000014496)	Ibsp (ENSDORG00000029980)	Dmp1 (ENSDORG00000002208)	Dspp (ENSDORG00000027245)	Sparcl1 (ENSDORG00000015935) ##22	Gm17660 (ENSDORG00000026156)	ENSDORG00000005571	Pkd2 (ENSDORG00000000341)	Abcg2 (ENSDORG00000011528)	ENSDORG00000001261	Herc6 (ENSDORG00000012896)	Map9 (ENSDORG00000025943)	Gucy1a1 (ENSDORG00000004395)	Gucy1b1 (ENSDORG00000004396)	Asic5 (ENSDORG00000004397)	Tdo2 (ENSDORG00000000529)	Ctso (ENSDORG00000002411)	Pdgfc (ENSDORG00000010339)	Glrb (ENSDORG00000007381)	Gria2 (ENSDORG00000004405)
Myomorpha	ANCESTRAL SPECIES	19								ENSGT00710000106792.h	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Muroidea	ANCESTRAL SPECIES	17								ENSGT00710000106792.h	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT01060000248660	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000163522.A.g.b	ENSGT00710000106792.h	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Cricetidae	ANCESTRAL SPECIES	14	ENSGT01060000248660	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000163522.A.g.b	ENSGT00710000106792.h	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000155048	ENSGT00510000047967	ENSGT00390000005497	ENSGT00950000183004.a.a.a.a	ENSGT00390000011228.b.a	ENSGT00940000160985	ENSGT00940000157869	ENSGT00710000106792.h	ENSGT00940000160729.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Chinese hamster chok1gshd	MODERN SPECIES	76	ENSCGRG00001016036	Fam3d (ENSCGRG00001000168)	Fam107a (ENSCGRG00001022141)	Acox2 (ENSCGRG00001013444)	Kctd6 (ENSCGRG00001009848)	ENSCGRG00001000571	Abcg3 (ENSCGRG00001004887)	ENSCGRG00001023071	Thoc2l (ENSCGRG00001009811)	Pkd2 (ENSCGRG00001016312)	Spp1 (ENSCGRG00001012247)	Dspp (ENSCGRG00001007381)	Mepe (ENSCGRG00001019599)	Ibsp (ENSCGRG00001016273)	Dmp1 (ENSCGRG00001013845)	Sparcl1 (ENSCGRG00001009590) ##22	Gm17660 (ENSCGRG00001013296)	Nudt9 (ENSCGRG00001011849)	Hsd17b11 (ENSCGRG00001007844)	Hsd17b13 (ENSCGRG00001005914)	ENSCGRG00001023510	Klhl8 (ENSCGRG00001018481)	Aff1 (ENSCGRG00001015769)	1700016H13Rik (ENSCGRG00001009503)	Slc10a6 (ENSCGRG00001004482)	Ptpn13 (ENSCGRG00001022752)	ENSCGRG00001000851	ENSCGRG00001000121	Mapk10 (ENSCGRG00001014731)	Arhgap24 (ENSCGRG00001022938)	Wdfy3 (ENSCGRG00001020063)
Golden Hamster	MODERN SPECIES	679	ENSMAUG00000011303	Fhit (ENSMAUG00000008107)	Cfap20dc (ENSMAUG00000000388)	Fam3d (ENSMAUG00000019297)	Fam107a (ENSMAUG00000014387)	Acox2 (ENSMAUG00000013454)	Kctd6 (ENSMAUG00000012810)	ENSMAUG00000010500	ENSMAUG00000012640	Pkd2 (ENSMAUG00000006073)	Spp1 (ENSMAUG00000018138)	Mepe (ENSMAUG00000017270)	Ibsp (ENSMAUG00000016877)	Dmp1 (ENSMAUG00000005904)	Dspp (ENSMAUG00000003984)	Sparcl1 (ENSMAUG00000001180) ##22	Gm17660 (ENSMAUG00000000460)	Nudt9 (ENSMAUG00000008475)	Hsd17b11 (ENSMAUG00000008255)	Hsd17b13 (ENSMAUG00000000594)	Klhl8 (ENSMAUG00000018112)	Aff1 (ENSMAUG00000010241)	1700016H13Rik (ENSMAUG00000008304)	Slc10a6 (ENSMAUG00000006807)	Ptpn13 (ENSMAUG00000000699)	Mapk10 (ENSMAUG00000017023)	Arhgap24 (ENSMAUG00000014737)	Wdfy3 (ENSMAUG00000008899)	Cds1 (ENSMAUG00000000198)	Nkx6-1 (ENSMAUG00000019458)	ENSMAUG00000015928
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000158258	ENSGT01060000248660	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000163522.A.g.b	ENSGT00710000106792.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Prairie vole	MODERN SPECIES	349	ENSMOCG00000012017	Zfp326 (ENSMOCG00000002827)	Lrrc8d (ENSMOCG00000022324)	Lrrc8c (ENSMOCG00000017993)	Lrrc8b (ENSMOCG00000015261)	ENSMOCG00000000462	Abcg3 (ENSMOCG00000016328)	ENSMOCG00000012561	Thoc2l (ENSMOCG00000019406)	Pkd2 (ENSMOCG00000017862)	ENSMOCG00000001601	Mepe (ENSMOCG00000013370)	Ibsp (ENSMOCG00000004131)	Dmp1 (ENSMOCG00000010313)	ENSMOCG00000005741	Sparcl1 (ENSMOCG00000020685) ##22	Gm17660 (ENSMOCG00000000931)	Nudt9 (ENSMOCG00000013057)	Hsd17b11 (ENSMOCG00000010971)	Hsd17b13 (ENSMOCG00000022291)	Klhl8 (ENSMOCG00000010742)	Aff1 (ENSMOCG00000017389)	1700016H13Rik (ENSMOCG00000015080)	Slc10a6 (ENSMOCG00000003945)	Ptpn13 (ENSMOCG00000021839)	ENSMOCG00000018036	Mapk10 (ENSMOCG00000014375)	Arhgap24 (ENSMOCG00000002718)	Wdfy3 (ENSMOCG00000001865)	Cds1 (ENSMOCG00000003586)	Nkx6-1 (ENSMOCG00000001725)
Northern American deer mouse	MODERN SPECIES	1	Lrrc8d (ENSPEMG00000021996)	Lrrc8c (ENSPEMG00000013757)	Lrrc8b (ENSPEMG00000005562)	ENSPEMG00000021964	ENSPEMG00000031325	ENSPEMG00000030651	ENSPEMG00000011871	Thoc2l (ENSPEMG00000011125)	ENSPEMG00000026974	Pkd2 (ENSPEMG00000010682)	Spp1 (ENSPEMG00000009651)	Mepe (ENSPEMG00000009010)	Ibsp (ENSPEMG00000025223)	Dmp1 (ENSPEMG00000006834)	Dspp (ENSPEMG00000025899)	ENSPEMG00000004426 ##22	Gm17660 (ENSPEMG00000000070)	Nudt9 (ENSPEMG00000018648)	Hsd17b11 (ENSPEMG00000016965)	Hsd17b13 (ENSPEMG00000014885)	Klhl8 (ENSPEMG00000011568)	Aff1 (ENSPEMG00000000785)	1700016H13Rik (ENSPEMG00000026458)	Slc10a6 (ENSPEMG00000016611)	Ptpn13 (ENSPEMG00000016673)	Mapk10 (ENSPEMG00000011205)	Arhgap24 (ENSPEMG00000007830)	Wdfy3 (ENSPEMG00000016957)	ENSPEMG00000025914	Cds1 (ENSPEMG00000017042)	Nkx6-1 (ENSPEMG00000015701)
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265	ENSGT00940000162658.a.b	ENSGT00940000154469.a.a.a.a.b.a	ENSGT00710000106792.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mus	ANCESTRAL SPECIES	14	ENSGT00940000158258	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265.m	ENSGT00940000154265.n.b.a.a.a	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265.m	ENSGT00940000154265.n.b.a.a.a	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mouse	MODERN SPECIES	14	Gbp10 (ENSMUSG00000105096)	Gm43302 (ENSMUSG00000079362)	Gbp4 (ENSMUSG00000079363)	Gbp9 (ENSMUSG00000029298)	Gbp8 (ENSMUSG00000034438)	Abcg3 (ENSMUSG00000029299)	Zfp951 (ENSMUSG00000072774)	Zfp33b (ENSMUSG00000120166)	Thoc2l (ENSMUSG00000097392)	Pkd2 (ENSMUSG00000034462)	Spp1 (ENSMUSG00000029304)	Mepe (ENSMUSG00000053863)	Ibsp (ENSMUSG00000029306)	Dmp1 (ENSMUSG00000029307)	Dspp (ENSMUSG00000053268)	Sparcl1 (ENSMUSG00000029309) ##22	Gm17660 (ENSMUSG00000091034)	Nudt9 (ENSMUSG00000029310)	Hsd17b11 (ENSMUSG00000029311)	Hsd17b13 (ENSMUSG00000034528)	Klhl8 (ENSMUSG00000029312)	Aff1 (ENSMUSG00000029313)	1700016H13Rik (ENSMUSG00000029320)	Slc10a6 (ENSMUSG00000029321)	Ptpn13 (ENSMUSG00000034573)	Mapk10 (ENSMUSG00000046709)	Arhgap24 (ENSMUSG00000057315)	Wdfy3 (ENSMUSG00000043940)	Cds1 (ENSMUSG00000029330)	Nkx6-1 (ENSMUSG00000035187)	Gpat3 (ENSMUSG00000029314)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000158258	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265.m	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00700000106112	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Steppe mouse	MODERN SPECIES	2874									Thoc2l (ENSMSIG00000005173)	Pkd2 (ENSMSIG00000005183)	Spp1 (ENSMSIG00000005255)	Mepe (ENSMSIG00000005264)	Ibsp (ENSMSIG00000005280)	Dmp1 (ENSMSIG00000005309)	Dspp (ENSMSIG00000005338)	Sparcl1 (ENSMSIG00000005405) ##22	Gm17660 (ENSMSIG00000005443)	Nudt9 (ENSMSIG00000005518)	Hsd17b13 (ENSMSIG00000005577)	Klhl8 (ENSMSIG00000005685)	Aff1 (ENSMSIG00000005805)	1700016H13Rik (ENSMSIG00000005958)	Slc10a6 (ENSMSIG00000006002)	Ptpn13 (ENSMSIG00000006045)
spretus	MODERN SPECIES	14	Lrrc8d (MGP_SPRETEiJ_G0028490)	Lrrc8c (MGP_SPRETEiJ_G0028489)	Lrrc8b (MGP_SPRETEiJ_G0028488)	MGP_SPRETEiJ_G0028487	MGP_SPRETEiJ_G0028485	MGP_SPRETEiJ_G0028484	MGP_SPRETEiJ_G0028482	Abcg3 (MGP_SPRETEiJ_G0028481)	Thoc2l (MGP_SPRETEiJ_G0028479)	Pkd2 (MGP_SPRETEiJ_G0028478)	Spp1 (MGP_SPRETEiJ_G0028477)	Mepe (MGP_SPRETEiJ_G0028476)	Ibsp (MGP_SPRETEiJ_G0028475)	Dmp1 (MGP_SPRETEiJ_G0028474)	Dspp (MGP_SPRETEiJ_G0028473)	Sparcl1 (MGP_SPRETEiJ_G0028472) ##22	Gm17660 (MGP_SPRETEiJ_G0028471)	Nudt9 (MGP_SPRETEiJ_G0028470)	Hsd17b11 (MGP_SPRETEiJ_G0028469)	Hsd17b13 (MGP_SPRETEiJ_G0028468)	Klhl8 (MGP_SPRETEiJ_G0028467)	Aff1 (MGP_SPRETEiJ_G0028466)	1700016H13Rik (MGP_SPRETEiJ_G0028465)	Slc10a6 (MGP_SPRETEiJ_G0028464)	Ptpn13 (MGP_SPRETEiJ_G0028463)	Mapk10 (MGP_SPRETEiJ_G0028462)	Arhgap24 (MGP_SPRETEiJ_G0028461)	Wdfy3 (MGP_SPRETEiJ_G0028460)	Cds1 (MGP_SPRETEiJ_G0028459)	Nkx6-1 (MGP_SPRETEiJ_G0028458)	Gpat3 (MGP_SPRETEiJ_G0028457)
Ryukyu mouse	MODERN SPECIES	14	Lrrc8c (MGP_CAROLIEiJ_G0027491)	Lrrc8b (MGP_CAROLIEiJ_G0027490)	MGP_CAROLIEiJ_G0027489	MGP_CAROLIEiJ_G0027488	Gbp6 (MGP_CAROLIEiJ_G0027487)	MGP_CAROLIEiJ_G0027485	MGP_CAROLIEiJ_G0027484	Abcg3 (MGP_CAROLIEiJ_G0027483)	Thoc2l (MGP_CAROLIEiJ_G0027482)	Pkd2 (MGP_CAROLIEiJ_G0027481)	Spp1 (MGP_CAROLIEiJ_G0027480)	Mepe (MGP_CAROLIEiJ_G0027479)	Ibsp (MGP_CAROLIEiJ_G0027478)	Dmp1 (MGP_CAROLIEiJ_G0027477)	Dspp (MGP_CAROLIEiJ_G0027476)	Sparcl1 (MGP_CAROLIEiJ_G0027475) ##22	Gm17660 (MGP_CAROLIEiJ_G0027474)	Nudt9 (MGP_CAROLIEiJ_G0027473)	Hsd17b11 (MGP_CAROLIEiJ_G0027472)	Hsd17b13 (MGP_CAROLIEiJ_G0027471)	Klhl8 (MGP_CAROLIEiJ_G0027470)	Aff1 (MGP_CAROLIEiJ_G0027469)	1700016H13Rik (MGP_CAROLIEiJ_G0027468)	Slc10a6 (MGP_CAROLIEiJ_G0027467)	Ptpn13 (MGP_CAROLIEiJ_G0027466)	Mapk10 (MGP_CAROLIEiJ_G0027465)	Arhgap24 (MGP_CAROLIEiJ_G0027464)	Wdfy3 (MGP_CAROLIEiJ_G0027463)	Cds1 (MGP_CAROLIEiJ_G0027462)	Nkx6-1 (MGP_CAROLIEiJ_G0027461)	Gpat3 (MGP_CAROLIEiJ_G0027460)
Shrew mouse	MODERN SPECIES	4	Hfm1 (MGP_PahariEiJ_G0017268)	Zfp644 (MGP_PahariEiJ_G0017267)	Barhl2 (MGP_PahariEiJ_G0017266)	MGP_PahariEiJ_G0017265	Lrrc8d (MGP_PahariEiJ_G0017264)	Lrrc8c (MGP_PahariEiJ_G0017263)	Lrrc8b (MGP_PahariEiJ_G0017262)	MGP_PahariEiJ_G0017261	Thoc2l (MGP_PahariEiJ_G0017260)	Pkd2 (MGP_PahariEiJ_G0017259)	Spp1 (MGP_PahariEiJ_G0017258)	Mepe (MGP_PahariEiJ_G0017257)	Ibsp (MGP_PahariEiJ_G0017256)	Dmp1 (MGP_PahariEiJ_G0017255)	Dspp (MGP_PahariEiJ_G0017254)	Sparcl1 (MGP_PahariEiJ_G0017253) ##22	Gm17660 (MGP_PahariEiJ_G0017252)	Nudt9 (MGP_PahariEiJ_G0017251)	MGP_PahariEiJ_G0017250	Hsd17b13 (MGP_PahariEiJ_G0017249)	Klhl8 (MGP_PahariEiJ_G0017248)	Aff1 (MGP_PahariEiJ_G0017247)	1700016H13Rik (MGP_PahariEiJ_G0017246)	Slc10a6 (MGP_PahariEiJ_G0017245)	Ptpn13 (MGP_PahariEiJ_G0017244)	Mapk10 (MGP_PahariEiJ_G0017243)	Arhgap24 (MGP_PahariEiJ_G0017242)	MGP_PahariEiJ_G0017241	Cds1 (MGP_PahariEiJ_G0017240)	Nkx6-1 (MGP_PahariEiJ_G0017239)	Gpat3 (MGP_PahariEiJ_G0017238)
Rat	MODERN SPECIES	5	ENSRNOG00000067007	Gbp6 (ENSRNOG00000068418)	Abcg3 (ENSRNOG00000070774)	Abcg3l3 (ENSRNOG00000069246)	LOC100366030 (ENSRNOG00000049446)	LOC108348123 (ENSRNOG00000043048)	Zfp951 (ENSRNOG00000037421)	Abcg3l1 (ENSRNOG00000069481)	Thoc2l (ENSRNOG00000042340)	Pkd2 (ENSRNOG00000002146)	Spp1 (ENSRNOG00000043451)	Mepe (ENSRNOG00000002154)	Ibsp (ENSRNOG00000002158)	Dmp1 (ENSRNOG00000002167)	Dspp (ENSRNOG00000002168)	Sparcl1 (ENSRNOG00000015093) ##22	Scpppq1 (ENSRNOG00000050047)	Nudt9 (ENSRNOG00000002186)	Hsd17b11 (ENSRNOG00000002210)	Hsd17b13 (ENSRNOG00000002212)	Klhl8 (ENSRNOG00000002214)	ENSRNOG00000066604	Aff1 (ENSRNOG00000002232)	Aff1-as1 (ENSRNOG00000060245)	Slc10a6 (ENSRNOG00000002057)	Ptpn13 (ENSRNOG00000002061)	Ndufb4l1 (ENSRNOG00000034289)	Mapk10 (ENSRNOG00000002079)	LOC120096563 (ENSRNOG00000050982)	ENSRNOG00000068459	Arhgap24 (ENSRNOG00000056944)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1601														Dmp1 (ENSNGAG00000009719)	Dspp (ENSNGAG00000012207)	Sparcl1 (ENSNGAG00000013980) ##22	Gm17660 (ENSNGAG00000017913)	Nudt9 (ENSNGAG00000019950)	Hsd17b11 (ENSNGAG00000006813)	Hsd17b13 (ENSNGAG00000011798)	ENSNGAG00000018962	ENSNGAG00000014096	1700016H13Rik (ENSNGAG00000019259)	Slc10a6 (ENSNGAG00000000716)	Ptpn13 (ENSNGAG00000011185)	Mapk10 (ENSNGAG00000009045)	Arhgap24 (ENSNGAG00000000035)	ENSNGAG00000017344	Wdfy3 (ENSNGAG00000010212)	Cds1 (ENSNGAG00000006898)	ENSNGAG00000012142
Lesser Egyptian jerboa	MODERN SPECIES	85	ENSJJAG00000014366	Tspan5 (ENSJJAG00000018655)	Rap1gds1 (ENSJJAG00000018234)	ENSJJAG00000016218	ENSJJAG00000010217	Unc5c (ENSJJAG00000022036)	Bmpr1b (ENSJJAG00000012811)	ENSJJAG00000003858	ENSJJAG00000024379	Thoc2l (ENSJJAG00000008784)	Pkd2 (ENSJJAG00000023331)	Spp1 (ENSJJAG00000018568)	Ibsp (ENSJJAG00000000975)	Dmp1 (ENSJJAG00000014935)	ENSJJAG00000009966	Sparcl1 (ENSJJAG00000000660) ##22	Gm17660 (ENSJJAG00000010984)	Nudt9 (ENSJJAG00000011040)	Hsd17b11 (ENSJJAG00000017142)	Hsd17b13 (ENSJJAG00000006835)	ENSJJAG00000011705	Aff1 (ENSJJAG00000022877)	1700016H13Rik (ENSJJAG00000007723)	Slc10a6 (ENSJJAG00000011681)	Ptpn13 (ENSJJAG00000011075)	Mapk10 (ENSJJAG00000022409)	Arhgap24 (ENSJJAG00000013242)	ENSJJAG00000016275	Wdfy3 (ENSJJAG00000016637)	Cds1 (ENSJJAG00000019458)	ENSJJAG00000008039
Atlantogenata	ANCESTRAL SPECIES	25	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00390000015889	ENSGT00610000087446	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Afrotheria	ANCESTRAL SPECIES	35	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00730000111489	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Afrotheria_a	ANCESTRAL SPECIES	35	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b	ENSGT00940000162273	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000162703	ENSGT00940000162279	ENSGT00940000156633	ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000002509	ENSGT00390000010702	ENSGT00390000002485	ENSGT00730000111375	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000161743	ENSGT00940000157583	ENSGT00950000182974.a.b	ENSGT00390000015549	ENSGT00950000182808.a.a.a.a.b	ENSGT00940000155133.b	ENSGT00940000153692.A	ENSGT00950000183015.D	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Elephant	MODERN SPECIES	302	ENSLAFG00000026731	GPRIN3 (ENSLAFG00000025610)	TIGD2 (ENSLAFG00000031840)	ENSLAFG00000006124	HERC3 (ENSLAFG00000005544)	PYURF (ENSLAFG00000001207)	HERC5 (ENSLAFG00000011856)	HERC6 (ENSLAFG00000002305)	PPM1K (ENSLAFG00000013249)	ENSLAFG00000000187	PKD2 (ENSLAFG00000003921)	SPP1 (ENSLAFG00000006514)	MEPE (ENSLAFG00000022668)	IBSP (ENSLAFG00000015238)	DMP1 (ENSLAFG00000004781)	SPARCL1 (ENSLAFG00000011395) ##22	NUDT9 (ENSLAFG00000011391)	HSD17B11 (ENSLAFG00000026758)	HSD17B13 (ENSLAFG00000004869)	KLHL8 (ENSLAFG00000015896)	ENSLAFG00000025818	ENSLAFG00000015880	ENSLAFG00000027149	C4orf36 (ENSLAFG00000014505)	SLC10A6 (ENSLAFG00000014503)	PTPN13 (ENSLAFG00000014491)	MAPK10 (ENSLAFG00000012079)	ARHGAP24 (ENSLAFG00000012071)	WDFY3 (ENSLAFG00000013162)	CDS1 (ENSLAFG00000013159)	ENSLAFG00000030127
Tenrec	MODERN SPECIES	4611																SPARCL1 (ENSETEG00000004154) ##22
Xenarthra	ANCESTRAL SPECIES	587												ENSGT00940000160729	ENSGT00940000159025	ENSGT00390000010702	ENSGT00390000002485	ENSGT00510000046787.e.a ##22	ENSGT00390000017405	ENSGT00940000160856	ENSGT00940000157583
Sloth	MODERN SPECIES	4238																SPARCL1 (ENSCHOG00000002544) ##22
Armadillo	MODERN SPECIES	2098										ENSDNOG00000005656	PKD2 (ENSDNOG00000005635)	MEPE (ENSDNOG00000036663)	IBSP (ENSDNOG00000041199)	ENSDNOG00000036664	ENSDNOG00000032333	SPARCL1 (ENSDNOG00000014000) ##22	NUDT9 (ENSDNOG00000049236)	HSD17B11 (ENSDNOG00000042281)	KLHL8 (ENSDNOG00000012256)
Platypus	MODERN SPECIES	3	SMIM43 (ENSOANG00000047440)	EXOSC9 (ENSOANG00000015114)	CCNA2 (ENSOANG00000044822)	BBS7 (ENSOANG00000015116)	TRPC3 (ENSOANG00000015117)	BLTP1 (ENSOANG00000015120)	ADAD1 (ENSOANG00000015125)	ENSOANG00000013637	BBS12 (ENSOANG00000013636)	FGF2 (ENSOANG00000048457)	ABCG2 (ENSOANG00000013633)	PKD2 (ENSOANG00000013631)	SPP1 (ENSOANG00000042157)	IBSP (ENSOANG00000043554)	ENSOANG00000013628	ENSOANG00000015354 ##22	NUDT9 (ENSOANG00000009493)	HSD17B11 (ENSOANG00000013627)	KLHL8 (ENSOANG00000013625)	AFF1 (ENSOANG00000013624)	ENSOANG00000029338	PTPN13 (ENSOANG00000006229)	SLC10A6 (ENSOANG00000037189)	MAPK10 (ENSOANG00000006227)	ARHGAP24 (ENSOANG00000006226)	WDFY3 (ENSOANG00000006219)	CDS1 (ENSOANG00000006213)	NKX6-1 (ENSOANG00000049849)	ERGIC3 (ENSOANG00000044234)	GPAT3 (ENSOANG00000015003)	MSR1 (ENSOANG00000015004)
Anura	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a ##22
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000008945	ENSLLEG00000008968	ENSLLEG00000009002	ENSLLEG00000009203	ENSLLEG00000009217	PPM1K (ENSLLEG00000009273)	ENSLLEG00000009637	ABCG2 (ENSLLEG00000009698)	ENSLLEG00000010218	PKD2 (ENSLLEG00000010255)	ENSLLEG00000010370	ENSLLEG00000010390	ENSLLEG00000010408	ENSLLEG00000010470	ENSLLEG00000010504	ENSLLEG00000010545 ##22	ENSLLEG00000010669	ENSLLEG00000010909	ENSLLEG00000011251	ENSLLEG00000011438	USO1 (ENSLLEG00000011584)	ENSLLEG00000012313	ENSLLEG00000012342	G3BP2 (ENSLLEG00000012387) ##20	ENSLLEG00000012572	CDKL2 (ENSLLEG00000012670)	ENSLLEG00000013161	ENSLLEG00000013169	PARM1 (ENSLLEG00000013179)	ENSLLEG00000013204	BTC (ENSLLEG00000013228)
Coelacanth	MODERN SPECIES	2292																ENSLACG00000003548 ##22
Elephant shark	MODERN SPECIES	1506	rchy1 (ENSCMIG00000015460)	ENSCMIG00000015462	DGKQ (ENSCMIG00000015475)	wdr32 (ENSCMIG00000015495)	si:ch211-175m2.5 (ENSCMIG00000015498)	DCTN6 (ENSCMIG00000015504)	gtf2e2 (ENSCMIG00000015517)	smim18 (ENSCMIG00000015522)	B4GALT1 (ENSCMIG00000015524)	zgc:92045 (ENSCMIG00000015529)	SARAF (ENSCMIG00000015541)	gsr (ENSCMIG00000015565)	ENSCMIG00000015613	mboat4 (ENSCMIG00000015615)	pkd2 (ENSCMIG00000015649)	ENSCMIG00000015684 ##22	uso1 (ENSCMIG00000015735)	ENSCMIG00000015944	g3bp2a (ENSCMIG00000015948) ##20	CDKL2 (ENSCMIG00000015974)	NPFFR2 (ENSCMIG00000015981)	tnksb (ENSCMIG00000016031)	dusp4 (ENSCMIG00000016110)	ENSCMIG00000016114	ENSCMIG00000016116	ppa2 (ENSCMIG00000016120)	ENSCMIG00000016123	CXXC4 (ENSCMIG00000016127)	ENSCMIG00000016136	exosc3 (ENSCMIG00000016146)	PIGG (ENSCMIG00000016162)