Tetrapoda	ANCESTRAL SPECIES	25	ENSGT00940000160064.b	ENSGT00940000155192	ENSGT00530000064550.A	ENSGT00940000153912.B	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b #7	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00940000163989.a.b	ENSGT00940000175002	ENSGT00940000156633 #14	ENSGT00940000159025 #16	ENSGT00510000046787.e.a #22	ENSGT00390000017018.b	ENSGT00390000011365.b	ENSGT00940000160368	ENSGT01030000235199	ENSGT00940000160508	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000160757	ENSGT00940000159886	ENSGT00390000000113.A.d	ENSGT00390000000113.A.c	ENSGT00940000153768.a	ENSGT00530000063506.A
Amniota	ANCESTRAL SPECIES	2	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00940000163989.a.b	ENSGT00610000087446	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00390000014810.b	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Mammalia	ANCESTRAL SPECIES	1	ENSGT00570000079168.b.b.b #7	ENSGT00950000183033.a.a.c.b ##8	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00610000087446	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00940000165877
Theria	ANCESTRAL SPECIES	6	ENSGT00940000162273	ENSGT00950000183033.a.a.c.b ##8	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Eutheria	ANCESTRAL SPECIES	2	ENSGT00570000079168.b.b.b #7	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000175002	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00900000143450	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00610000087446	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00900000143450	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Primates	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000153675.a.a.b.e.b	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000153675.a.a.b.e.b	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Marmoset	MODERN SPECIES	15	GPRIN3 (ENSCJAG00000022026) #7	FAM13A (ENSCJAG00000006632) #8	HERC3 (ENSCJAG00000006525) #9	NAP1L5 (ENSCJAG00000068187) #10	PYURF (ENSCJAG00000081652) #11	HERC5 (ENSCJAG00000006474) #12	HERC6 (ENSCJAG00000006441) #13	PPM1K (ENSCJAG00000006428) #14	ENSCJAG00000006370 #15	PKD2 (ENSCJAG00000006321) #16	SPP1 (ENSCJAG00000006299) #17	MEPE (ENSCJAG00000006293) #18	IBSP (ENSCJAG00000006284) #19	DMP1 (ENSCJAG00000006215) #20	DSPP (ENSCJAG00000040393) #21	SPARCL1 (ENSCJAG00000006192) #22	NUDT9 (ENSCJAG00000006159) #23	HSD17B11 (ENSCJAG00000006150) #24	HSD17B13 (ENSCJAG00000006120) #25	ENSCJAG00000070202 #26	KLHL8 (ENSCJAG00000006088) #27	AFF1 (ENSCJAG00000006047) #28	ENSCJAG00000083232 #29	ENSCJAG00000078087 #30	ENSCJAG00000075317 #31	C4orf36 (ENSCJAG00000070848) #32	SLC10A6 (ENSCJAG00000006010) #33	ENSCJAG00000077823 #34	PTPN13 (ENSCJAG00000005723) #35	MAPK10 (ENSCJAG00000005621) #36	ARHGAP24 (ENSCJAG00000005600) #37
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00950000183175.B.b	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000153675.a.a.b.e.b	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Capuchin	MODERN SPECIES	177		TIGD2 (ENSCCAG00000005186)	FAM13A (ENSCCAG00000038125) #8	HERC3 (ENSCCAG00000027581) #9	PYURF (ENSCCAG00000025549) #11	HERC5 (ENSCCAG00000019767) #12	HERC6 (ENSCCAG00000035110) #13	PPM1K (ENSCCAG00000033821) #14	ENSCCAG00000029905 #15	PKD2 (ENSCCAG00000033897) #16	SPP1 (ENSCCAG00000033672) #17	MEPE (ENSCCAG00000036917) #18	IBSP (ENSCCAG00000029190) #19	DMP1 (ENSCCAG00000021738) #20	DSPP (ENSCCAG00000026109) #21	SPARCL1 (ENSCCAG00000028187) #22	NUDT9 (ENSCCAG00000030376) #23	ENSCCAG00000005825	HSD17B11 (ENSCCAG00000016570) #24	HSD17B13 (ENSCCAG00000027281) #25	KLHL8 (ENSCCAG00000019808) #27	AFF1 (ENSCCAG00000027623) #28	C4orf36 (ENSCCAG00000029092) #32	SLC10A6 (ENSCCAG00000034275) #33	PTPN13 (ENSCCAG00000028694) #35	MAPK10 (ENSCCAG00000020883) #36	ARHGAP24 (ENSCCAG00000024836) #37
Bolivian squirrel monkey	MODERN SPECIES	51	FAM13A (ENSSBOG00000022461) #8	HERC3 (ENSSBOG00000023004) #9	ENSSBOG00000028700	PYURF (ENSSBOG00000022328) #11	HERC5 (ENSSBOG00000036207) #12	HERC6 (ENSSBOG00000031841) #13	PPM1K (ENSSBOG00000023972) #14	ENSSBOG00000028929 #15	PKD2 (ENSSBOG00000022615) #16	SPP1 (ENSSBOG00000019758) #17	ENSSBOG00000012030	MEPE (ENSSBOG00000031405) #18	IBSP (ENSSBOG00000031488) #19	DMP1 (ENSSBOG00000027395) #20	DSPP (ENSSBOG00000025289) #21	SPARCL1 (ENSSBOG00000027855) #22	HSD17B11 (ENSSBOG00000034492) #24	HSD17B13 (ENSSBOG00000023206) #25	KLHL8 (ENSSBOG00000021069) #27	AFF1 (ENSSBOG00000035401) #28	C4orf36 (ENSSBOG00000035411) #32	SLC10A6 (ENSSBOG00000035397) #33	ENSSBOG00000025416	PTPN13 (ENSSBOG00000034136) #35	ENSSBOG00000021152	MAPK10 (ENSSBOG00000029248) #36	ARHGAP24 (ENSSBOG00000036059) #37	WDFY3 (ENSSBOG00000026656)	CDS1 (ENSSBOG00000025353)	NKX6-1 (ENSSBOG00000032034)	GPAT3 (ENSSBOG00000033661)
Mas night monkey	MODERN SPECIES	674	FAM13A (ENSANAG00000031344) #8	HERC3 (ENSANAG00000022838) #9	NAP1L5 (ENSANAG00000007129) #10	PYURF (ENSANAG00000029857) #11	PIGY (ENSANAG00000009282)	HERC5 (ENSANAG00000024422) #12	HERC6 (ENSANAG00000028341) #13	PPM1K (ENSANAG00000022825) #14	ENSANAG00000030638 #15	PKD2 (ENSANAG00000029381) #16	SPP1 (ENSANAG00000034840) #17	MEPE (ENSANAG00000031783) #18	IBSP (ENSANAG00000037860) #19	DMP1 (ENSANAG00000035613) #20	DSPP (ENSANAG00000038291) #21	SPARCL1 (ENSANAG00000037502) #22	NUDT9 (ENSANAG00000027203) #23	ENSANAG00000019492	HSD17B11 (ENSANAG00000032652) #24	HSD17B13 (ENSANAG00000038096) #25	KLHL8 (ENSANAG00000028175) #27	ENSANAG00000034267	AFF1 (ENSANAG00000017095) #28	C4orf36 (ENSANAG00000015388) #32	ENSANAG00000011451	SLC10A6 (ENSANAG00000019632) #33	PTPN13 (ENSANAG00000033639) #35	ENSANAG00000026989	MAPK10 (ENSANAG00000016888) #36	ENSANAG00000022867	ENSANAG00000028685
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000015889.j #11	ENSGT00610000087446	ENSGT00390000015889.i #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549 #32	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000015889.j #11	ENSGT00610000087446	ENSGT00390000015889.i #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549 #32	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.i #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000153112.A	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549 #32	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.i #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT01020000230401.a.a.a.i.a.a	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000153112.A	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549 #32	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223
Pan	ANCESTRAL SPECIES	7	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.i #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT01020000230401.a.a.a.i.a.a	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000153112.A	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000183183.b.a.y.b	ENSGT00390000015549 #32	ENSGT00940000169357	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000160193	ENSGT00940000157266
Chimpanzee	MODERN SPECIES	17	FAM13A (ENSPTRG00000016278) #8	NAP1L5 (ENSPTRG00000016277) #10	HERC3 (ENSPTRG00000051169) #9	PYURF (ENSPTRG00000016275) #11	HERC5 (ENSPTRG00000016273) #12	HERC6 (ENSPTRG00000016272) #13	PPM1K (ENSPTRG00000016271) #14	ABCG2 (ENSPTRG00000016270)	PKD2 (ENSPTRG00000016267) #16	SPP1 (ENSPTRG00000016266) #17	ENSPTRG00000048010	MEPE (ENSPTRG00000016264) #18	IBSP (ENSPTRG00000016263) #19	DMP1 (ENSPTRG00000016262) #20	DSPP (ENSPTRG00000016261) #21	SPARCL1 (ENSPTRG00000016260) #22	NUDT9 (ENSPTRG00000016259) #23	HSD17B11 (ENSPTRG00000022658) #24	HSD17B13 (ENSPTRG00000016258) #25	ENSPTRG00000046435	KLHL8 (ENSPTRG00000016256) #27	AFF1 (ENSPTRG00000016255) #28	ENSPTRG00000050251	C4H4orf36 (ENSPTRG00000016254) #32	ENSPTRG00000043177	SLC10A6 (ENSPTRG00000016253) #33	PTPN13 (ENSPTRG00000016249) #35	MAPK10 (ENSPTRG00000016244) #36	ARHGAP24 (ENSPTRG00000016243) #37	GABRG1 (ENSPTRG00000016024)	GABRA2 (ENSPTRG00000016026)
Bonobo	MODERN SPECIES	17	FAM13A (ENSPPAG00000001057) #8	ENSPPAG00000040579 #10	HERC3 (ENSPPAG00000028738) #9	PYURF (ENSPPAG00000024990) #11	HERC5 (ENSPPAG00000029422) #12	HERC6 (ENSPPAG00000013440) #13	PPM1K (ENSPPAG00000042478) #14	ABCG2 (ENSPPAG00000024257)	ENSPPAG00000012455	PKD2 (ENSPPAG00000031097) #16	SPP1 (ENSPPAG00000040172) #17	ENSPPAG00000031090	MEPE (ENSPPAG00000041299) #18	IBSP (ENSPPAG00000038769) #19	DMP1 (ENSPPAG00000040896) #20	SPARCL1 (ENSPPAG00000033615) #22	NUDT9 (ENSPPAG00000042541) #23	HSD17B11 (ENSPPAG00000013061) #24	HSD17B13 (ENSPPAG00000042548) #25	KLHL8 (ENSPPAG00000030051) #27	AFF1 (ENSPPAG00000029196) #28	ENSPPAG00000028030	C4orf36 (ENSPPAG00000043538) #32	ENSPPAG00000037218	SLC10A6 (ENSPPAG00000007271) #33	PTPN13 (ENSPPAG00000037012) #35	MAPK10 (ENSPPAG00000042829) #36	ARHGAP24 (ENSPPAG00000036857) #37	GABRG1 (ENSPPAG00000027800)	GABRA2 (ENSPPAG00000028343)	COX7B2 (ENSPPAG00000017844)
Human	MODERN SPECIES	16	NAP1L5 (ENSG00000177432) #10	HERC3 (ENSG00000138641) #9	HERC3 (ENSG00000287542)	PIGY (ENSG00000255072)	PYURF (ENSG00000145337) #11	HERC5 (ENSG00000138646) #12	HERC6 (ENSG00000138642) #13	PPM1K (ENSG00000163644) #14	ABCG2 (ENSG00000118777)	PKD2 (ENSG00000118762) #16	SPP1 (ENSG00000118785) #17	MEPE (ENSG00000152595) #18	IBSP (ENSG00000029559) #19	DMP1 (ENSG00000152592) #20	DSPP (ENSG00000152591) #21	SPARCL1 (ENSG00000152583) #22	NUDT9 (ENSG00000170502) #23	HSD17B11 (ENSG00000198189) #24	HSD17B13 (ENSG00000170509) #25	KLHL8 (ENSG00000145332) #27	AFF1 (ENSG00000172493) #28	ENSG00000285458	C4orf36 (ENSG00000163633) #32	SLC10A6 (ENSG00000145283) #33	PTPN13 (ENSG00000163629) #35	MAPK10 (ENSG00000109339) #36	ARHGAP24 (ENSG00000138639) #37	WDFY3 (ENSG00000163625)	CDS1 (ENSG00000163624)	NKX6-1 (ENSG00000163623)	GPAT3 (ENSG00000138678)
Gorilla	MODERN SPECIES	17	FAM13A (ENSGGOG00000024484) #8	ENSGGOG00000023308 #10	HERC3 (ENSGGOG00000009326) #9	PYURF (ENSGGOG00000028205) #11	HERC5 (ENSGGOG00000010944) #12	HERC6 (ENSGGOG00000010928) #13	PPM1K (ENSGGOG00000002763) #14	ENSGGOG00000002002 #15	PKD2 (ENSGGOG00000003323) #16	SPP1 (ENSGGOG00000005577) #17	ENSGGOG00000006185	MEPE (ENSGGOG00000009745) #18	IBSP (ENSGGOG00000007024) #19	DMP1 (ENSGGOG00000026902) #20	DSPP (ENSGGOG00000024325) #21	SPARCL1 (ENSGGOG00000015425) #22	NUDT9 (ENSGGOG00000014777) #23	HSD17B11 (ENSGGOG00000014710) #24	HSD17B13 (ENSGGOG00000002954) #25	ENSGGOG00000022570	KLHL8 (ENSGGOG00000014648) #27	AFF1 (ENSGGOG00000008497) #28	ENSGGOG00000037353	C4orf36 (ENSGGOG00000005547) #32	SLC10A6 (ENSGGOG00000007512) #33	PTPN13 (ENSGGOG00000025765) #35	MAPK10 (ENSGGOG00000003141) #36	ARHGAP24 (ENSGGOG00000006266) #37	WDFY3 (ENSGGOG00000006370)	CDS1 (ENSGGOG00000002418)	NKX6-1 (ENSGGOG00000008459)
Orangutan	MODERN SPECIES	17	GPRIN3 (ENSPPYG00000014931) #7	TIGD2 (ENSPPYG00000014930)	FAM13A (ENSPPYG00000014928) #8	NAP1L5 (ENSPPYG00000038351) #10	HERC3 (ENSPPYG00000014927) #9	ENSPPYG00000014926 #11	HERC5 (ENSPPYG00000014925) #12	HERC6 (ENSPPYG00000014924) #13	PPM1K (ENSPPYG00000038477) #14	ENSPPYG00000014922 #15	PKD2 (ENSPPYG00000014921) #16	SPP1 (ENSPPYG00000037006) #17	MEPE (ENSPPYG00000014919) #18	IBSP (ENSPPYG00000014918) #19	DMP1 (ENSPPYG00000014917) #20	SPARCL1 (ENSPPYG00000014915) #22	NUDT9 (ENSPPYG00000014914) #23	HSD17B11 (ENSPPYG00000014913) #24	HSD17B13 (ENSPPYG00000014912) #25	ENSPPYG00000039765	KLHL8 (ENSPPYG00000014911) #27	AFF1 (ENSPPYG00000014910) #28	C4orf36 (ENSPPYG00000014909) #32	SLC10A6 (ENSPPYG00000040769) #33	PTPN13 (ENSPPYG00000014908) #35	MAPK10 (ENSPPYG00000014907) #36	ARHGAP24 (ENSPPYG00000014906) #37	WDFY3 (ENSPPYG00000014903)	CDS1 (ENSPPYG00000014902)	NKX6-1 (ENSPPYG00000014901)	GPAT3 (ENSPPYG00000014900)
Gibbon	MODERN SPECIES	24	ENSNLEG00000018566 #10	HERC3 (ENSNLEG00000009752) #9	ENSNLEG00000009750 #11	PIGY (ENSNLEG00000018565)	HERC5 (ENSNLEG00000009725) #12	HERC6 (ENSNLEG00000009683) #13	PPM1K (ENSNLEG00000009677) #14	ENSNLEG00000009615 #15	PKD2 (ENSNLEG00000009602) #16	SPP1 (ENSNLEG00000009599) #17	ENSNLEG00000032534	MEPE (ENSNLEG00000009593) #18	IBSP (ENSNLEG00000009587) #19	DMP1 (ENSNLEG00000009581) #20	DSPP (ENSNLEG00000009572) #21	SPARCL1 (ENSNLEG00000009544) #22	NUDT9 (ENSNLEG00000032434) #23	HSD17B11 (ENSNLEG00000033296) #24	HSD17B13 (ENSNLEG00000009489) #25	KLHL8 (ENSNLEG00000009463) #27	AFF1 (ENSNLEG00000009429) #28	ENSNLEG00000027926	C4orf36 (ENSNLEG00000030589) #32	ENSNLEG00000033518	SLC10A6 (ENSNLEG00000009412) #33	PTPN13 (ENSNLEG00000009323) #35	MAPK10 (ENSNLEG00000009285) #36	ARHGAP24 (ENSNLEG00000009269) #37	WDFY3 (ENSNLEG00000009171)	CDS1 (ENSNLEG00000009160)	ENSNLEG00000028024
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a #8	ENSGT00940000153593.c.b.e	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00910000147838	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000153593.c.b.e	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000154826.nb.a.a	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.j #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000153593.c.b.e	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000154826.nb.a.a	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.j #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Macaca	ANCESTRAL SPECIES	18	ENSGT00950000183033.a.b.a #8	ENSGT00940000153593.c.b.e	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.j #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT01100000263539.b.b.b.b.a.a.b.a.a.a	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.j #35	ENSGT00940000155133.b.i #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000156935	ENSGT00390000014817	ENSGT00390000008110	ENSGT00390000013532
Crab-eating macaque	MODERN SPECIES	15	FAM13A (ENSMFAG00000033016) #8	ENSMFAG00000048227	HERC3 (ENSMFAG00000031659) #9	HERC5 (ENSMFAG00000045729) #12	HERC6 (ENSMFAG00000040004) #13	PPM1K (ENSMFAG00000030885) #14	PYURF (ENSMFAG00000002664) #11	ENSMFAG00000042464 #15	ENSMFAG00000053787	ENSMFAG00000043652 #16	SPP1 (ENSMFAG00000038158) #17	ENSMFAG00000063129	MEPE (ENSMFAG00000042632) #18	IBSP (ENSMFAG00000029098) #19	DMP1 (ENSMFAG00000002413) #20	SPARCL1 (ENSMFAG00000031337) #22	NUDT9 (ENSMFAG00000002084) #23	HSD17B11 (ENSMFAG00000038343) #24	HSD17B13 (ENSMFAG00000040860) #25	KLHL8 (ENSMFAG00000041071) #27	AFF1 (ENSMFAG00000037700) #28	ENSMFAG00000061398	C4orf36 (ENSMFAG00000049033) #32	SLC10A6 (ENSMFAG00000003336) #33	PTPN13 (ENSMFAG00000001116) #35	ENSMFAG00000057457 #35	MAPK10 (ENSMFAG00000001537) #36	ENSMFAG00000065494	ARHGAP24 (ENSMFAG00000032831) #37	DCUN1D4 (ENSMFAG00000003049)	LRRC66 (ENSMFAG00000035332)
Rhesus	MODERN SPECIES	15	FAM13A (ENSMMUG00000010141) #8	NAP1L5 (ENSMMUG00000058544) #10	HERC3 (ENSMMUG00000010138) #9	PIGY (ENSMMUG00000010318) #11	HERC5 (ENSMMUG00000010316) #12	HERC6 (ENSMMUG00000010314) #13	ENSMMUG00000062799	PPM1K (ENSMMUG00000004561) #14	ABCG2 (ENSMMUG00000008797) #15	PKD2 (ENSMMUG00000008795) #16	SPP1 (ENSMMUG00000008793) #17	ENSMMUG00000058934	MEPE (ENSMMUG00000011110) #18	IBSP (ENSMMUG00000011111) #19	DMP1 (ENSMMUG00000011114) #20	SPARCL1 (ENSMMUG00000019047) #22	NUDT9 (ENSMMUG00000019043) #23	HSD17B11 (ENSMMUG00000019041) #24	HSD17B13 (ENSMMUG00000019040) #25	KLHL8 (ENSMMUG00000014080) #27	ENSMMUG00000051677 ##31	AFF1 (ENSMMUG00000014076) #28	C5H4orf36 (ENSMMUG00000059657) #32	SLC10A6 (ENSMMUG00000003734) #33	PTPN13 (ENSMMUG00000003726) #35	ENSMMUG00000063428	MAPK10 (ENSMMUG00000008342) #36	ARHGAP24 (ENSMMUG00000008341) #37	ENSMMUG00000051109 ##29	DCUN1D4 (ENSMMUG00000008579)	LRRC66 (ENSMMUG00000018939)
Pig-tailed macaque	MODERN SPECIES	560	FAM13A (ENSMNEG00000034375) #8	ENSMNEG00000019048	HERC3 (ENSMNEG00000045189) #9	NAP1L5 (ENSMNEG00000042035) #10	PYURF (ENSMNEG00000040100) #11	HERC5 (ENSMNEG00000040366) #12	HERC6 (ENSMNEG00000043508) #13	PPM1K (ENSMNEG00000039204) #14	ENSMNEG00000035519 #15	PKD2 (ENSMNEG00000029251) #16	SPP1 (ENSMNEG00000043112) #17	MEPE (ENSMNEG00000025404) #18	IBSP (ENSMNEG00000041631) #19	DMP1 (ENSMNEG00000031482) #20	DSPP (ENSMNEG00000028809) #21	SPARCL1 (ENSMNEG00000028043) #22	NUDT9 (ENSMNEG00000033450) #23	HSD17B11 (ENSMNEG00000029758) #24	HSD17B13 (ENSMNEG00000043671) #25	KLHL8 (ENSMNEG00000030082) #27	AFF1 (ENSMNEG00000031536) #28	C4orf36 (ENSMNEG00000029673) #32	SLC10A6 (ENSMNEG00000040873) #33	PTPN13 (ENSMNEG00000030866) #35	MAPK10 (ENSMNEG00000043177) #36	ARHGAP24 (ENSMNEG00000007102) #37
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000154826.nb.a.a	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.j #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223.o	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Olive baboon	MODERN SPECIES	13	ENSPANG00000011877	FAM13A (ENSPANG00000018305) #8	NAP1L5 (ENSPANG00000000430) #10	HERC3 (ENSPANG00000011209) #9	PYURF (ENSPANG00000041123) #11	HERC5 (ENSPANG00000014742) #12	HERC6 (ENSPANG00000021686) #13	PPM1K (ENSPANG00000017893) #14	ENSPANG00000045201	PKD2 (ENSPANG00000008259) #16	ENSPANG00000019860 #15	SPP1 (ENSPANG00000017630) #17	MEPE (ENSPANG00000019861) #18	IBSP (ENSPANG00000008567) #19	DMP1 (ENSPANG00000014206) #20	SPARCL1 (ENSPANG00000014207) #22	NUDT9 (ENSPANG00000012884) #23	ENSPANG00000050649	ENSPANG00000050843	HSD17B11 (ENSPANG00000011210) #24	HSD17B13 (ENSPANG00000007692) #25	KLHL8 (ENSPANG00000011211) #27	AFF1 (ENSPANG00000016722) #28	C4orf36 (ENSPANG00000047799) #32	SLC10A6 (ENSPANG00000008483) #33	PTPN13 (ENSPANG00000016948) #35	MAPK10 (ENSPANG00000021440) #36	ARHGAP24 (ENSPANG00000008484) #37	ENSPANG00000038403	WDFY3 (ENSPANG00000022290)	ENSPANG00000020530
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.j #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223.o	ENSGT00940000160897	ENSGT01030000234574.B.c.a.c	ENSGT00530000063424.b
Drill	MODERN SPECIES	1048			FAM13A (ENSMLEG00000001517) #8	HERC3 (ENSMLEG00000034801) #9	NAP1L5 (ENSMLEG00000042654) #10	PYURF (ENSMLEG00000043013) #11	HERC5 (ENSMLEG00000041218) #12	HERC6 (ENSMLEG00000038794) #13	PPM1K (ENSMLEG00000033146) #14	ENSMLEG00000031872 #15	ENSMLEG00000038448 #16	SPP1 (ENSMLEG00000029827) #17	MEPE (ENSMLEG00000032058) #18	IBSP (ENSMLEG00000028238) #19	DMP1 (ENSMLEG00000043383) #20	SPARCL1 (ENSMLEG00000035957) #22	NUDT9 (ENSMLEG00000039145) #23	HSD17B11 (ENSMLEG00000038541) #24	HSD17B13 (ENSMLEG00000037103) #25	KLHL8 (ENSMLEG00000030301) #27	AFF1 (ENSMLEG00000039099) #28	C4orf36 (ENSMLEG00000026188) #32	SLC10A6 (ENSMLEG00000000063) #33	PTPN13 (ENSMLEG00000028941) #35
Sooty mangabey	MODERN SPECIES	507	FAM13A (ENSCATG00000040672) #8	ENSCATG00000019340	HERC3 (ENSCATG00000018920) #9	NAP1L5 (ENSCATG00000039043) #10	PYURF (ENSCATG00000043821) #11	HERC5 (ENSCATG00000038271) #12	HERC6 (ENSCATG00000045034) #13	PPM1K (ENSCATG00000041000) #14	ENSCATG00000037267 #15	PKD2 (ENSCATG00000043739) #16	SPP1 (ENSCATG00000036269) #17	MEPE (ENSCATG00000042357) #18	IBSP (ENSCATG00000040962) #19	DMP1 (ENSCATG00000035040) #20	DSPP (ENSCATG00000039736) #21	SPARCL1 (ENSCATG00000045171) #22	NUDT9 (ENSCATG00000040205) #23	HSD17B11 (ENSCATG00000040665) #24	HSD17B13 (ENSCATG00000025627) #25	KLHL8 (ENSCATG00000039730) #27	AFF1 (ENSCATG00000039501) #28	C4orf36 (ENSCATG00000036591) #32	SLC10A6 (ENSCATG00000032176) #33	PTPN13 (ENSCATG00000017113) #35	MAPK10 (ENSCATG00000043627) #36	ARHGAP24 (ENSCATG00000038010) #37	ENSCATG00000004763	WDFY3 (ENSCATG00000028669)	CDS1 (ENSCATG00000037354)	NKX6-1 (ENSCATG00000020976)	GPAT3 (ENSCATG00000031129)
Vervet Monkey	MODERN SPECIES	26	TIGD2 (ENSCSAG00000000410)	FAM13A (ENSCSAG00000004234) #8	NAP1L5 (ENSCSAG00000000411) #10	HERC3 (ENSCSAG00000004279) #9	PYURF (ENSCSAG00000004289) #11	HERC5 (ENSCSAG00000004292) #12	HERC6 (ENSCSAG00000004295) #13	PPM1K (ENSCSAG00000004297) #14	ENSCSAG00000000412	ENSCSAG00000004301 #15	PKD2 (ENSCSAG00000004305) #16	SPP1 (ENSCSAG00000004308) #17	MEPE (ENSCSAG00000004309) #18	IBSP (ENSCSAG00000004313) #19	DMP1 (ENSCSAG00000004318) #20	SPARCL1 (ENSCSAG00000004320) #22	NUDT9 (ENSCSAG00000004323) #23	HSD17B11 (ENSCSAG00000004327) #24	HSD17B13 (ENSCSAG00000004328) #25	KLHL8 (ENSCSAG00000004331) #27	AFF1 (ENSCSAG00000004333) #28	C4orf36 (ENSCSAG00000004334) #32	SLC10A6 (ENSCSAG00000004337) #33	PTPN13 (ENSCSAG00000004340) #35	ENSCSAG00000000413	MAPK10 (ENSCSAG00000004343) #36	ARHGAP24 (ENSCSAG00000004344) #37	ENSCSAG00000004347 #37	WDFY3 (ENSCSAG00000004361)	CDS1 (ENSCSAG00000004368)	NKX6-1 (ENSCSAG00000004373)
Rhinopithecus	ANCESTRAL SPECIES	390												ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000154351.k.b.a.a	ENSGT00940000155133.b #35
Black snub-nosed monkey	MODERN SPECIES	196												MEPE (ENSRBIG00000040929) #18	IBSP (ENSRBIG00000034976) #19	DMP1 (ENSRBIG00000026541) #20	DSPP (ENSRBIG00000035721) #21	SPARCL1 (ENSRBIG00000029051) #22	NUDT9 (ENSRBIG00000032559) #23	HSD17B11 (ENSRBIG00000041793) #24
Golden snub-nosed monkey	MODERN SPECIES	2401														DMP1 (ENSRROG00000040143) #20	ENSRROG00000038954	SPARCL1 (ENSRROG00000030085) #22	NUDT9 (ENSRROG00000039332) #23	HSD17B11 (ENSRROG00000033725) #24	HSD17B13 (ENSRROG00000029372) #25	KLHL8 (ENSRROG00000045332) #27	AFF1 (ENSRROG00000045716) #28	ENSRROG00000043938	C4orf36 (ENSRROG00000042196) #32	SLC10A6 (ENSRROG00000024030) #33	PTPN13 (ENSRROG00000028522) #35	ENSRROG00000031297	ENSRROG00000043961
Tarsier	MODERN SPECIES	6665												MEPE (ENSTSYG00000032520) #18	IBSP (ENSTSYG00000031045) #19	DMP1 (ENSTSYG00000035202) #20	DSPP (ENSTSYG00000028838) #21	SPARCL1 (ENSTSYG00000009223) #22	NUDT9 (ENSTSYG00000009191) #23	HSD17B11 (ENSTSYG00000005711) #24
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509.a #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f
Lemuriformes	ANCESTRAL SPECIES	52	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446.o	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509.a #17	ENSGT00390000002509.b #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f
Mouse lemur	MODERN SPECIES	21	ENSMICG00000005634	GPRIN3 (ENSMICG00000036743) #7	FAM13A (ENSMICG00000004166) #8	NAP1L5 (ENSMICG00000030185) #10	HERC3 (ENSMICG00000004118) #9	PYURF (ENSMICG00000038671) #11	ENSMICG00000027712 #12	ENSMICG00000045611 #14	ENSMICG00000003935 #15	ENSMICG00000047698 #16	SPP1 (ENSMICG00000042086) #17	MEPE (ENSMICG00000015496) #18	IBSP (ENSMICG00000042390) #19	ENSMICG00000046330 #20	DSPP (ENSMICG00000031483) #21	SPARCL1 (ENSMICG00000026718) #22	NUDT9 (ENSMICG00000046445) #23	HSD17B11 (ENSMICG00000001078) #24	HSD17B13 (ENSMICG00000008918) #25	KLHL8 (ENSMICG00000006479) #27	ENSMICG00000033298	ENSMICG00000038573	ENSMICG00000041648	TRIM7 (ENSMICG00000028707)	ENSMICG00000032858	RACK1 (ENSMICG00000014201)	TRIM52 (ENSMICG00000043353)	ZNF354B (ENSMICG00000035274)	PROP1 (ENSMICG00000027568)	FRMD4B (ENSMICG00000045910)	ENSMICG00000046450
Lemuriformes_a	ANCESTRAL SPECIES	64	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446.o	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509.a #17	ENSGT00390000002509.b #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b.f
Greater bamboo lemur	MODERN SPECIES	64			CCSER1 (ENSPSMG00000016313)	ENSPSMG00000016319	PPM1K (ENSPSMG00000016350) #14	ABCG2 (ENSPSMG00000016426)	ENSPSMG00000016441	PKD2 (ENSPSMG00000016463) #16	ENSPSMG00000016471 #17	ENSPSMG00000016478 #17	MEPE (ENSPSMG00000016484) #18	ENSPSMG00000016488	IBSP (ENSPSMG00000016491) #19	DMP1 (ENSPSMG00000016501) #20	DSPP (ENSPSMG00000016539) #21	SPARCL1 (ENSPSMG00000016553) #22	NUDT9 (ENSPSMG00000016567) #23	HSD17B11 (ENSPSMG00000016611) #24	HSD17B13 (ENSPSMG00000016633) #25	KLHL8 (ENSPSMG00000016695) #27	AFF1 (ENSPSMG00000016833) #28	C4orf36 (ENSPSMG00000016893) #32	SLC10A6 (ENSPSMG00000016898) #33	PTPN13 (ENSPSMG00000017328) #35	MAPK10 (ENSPSMG00000017774) #36	ENSPSMG00000017824	ARHGAP24 (ENSPSMG00000017866) #37	ENSPSMG00000017913	WDFY3 (ENSPSMG00000018028)	CDS1 (ENSPSMG00000018082)	NKX6-1 (ENSPSMG00000018100)
Coquerels sifaka	MODERN SPECIES	371	CCSER1 (ENSPCOG00000017946)	MMRN1 (ENSPCOG00000017828)	SNCA (ENSPCOG00000021411)	FAM13A (ENSPCOG00000013790) #8	HERC3 (ENSPCOG00000019350) #9	PYURF (ENSPCOG00000016509) #11	HERC5 (ENSPCOG00000021926) #12	ENSPCOG00000016223 #13	PPM1K (ENSPCOG00000027984) #14	ENSPCOG00000020069 #15	PKD2 (ENSPCOG00000019291) #16	SPP1 (ENSPCOG00000006026) #17	MEPE (ENSPCOG00000028720) #18	IBSP (ENSPCOG00000018630) #19	DMP1 (ENSPCOG00000023727) #20	SPARCL1 (ENSPCOG00000023448) #22	NUDT9 (ENSPCOG00000028049) #23	HSD17B11 (ENSPCOG00000024521) #24	ENSPCOG00000003550	HSD17B13 (ENSPCOG00000016156) #25	KLHL8 (ENSPCOG00000018983) #27	AFF1 (ENSPCOG00000027339) #28	C4orf36 (ENSPCOG00000023888) #32	SLC10A6 (ENSPCOG00000026098) #33	PTPN13 (ENSPCOG00000023990) #35	ENSPCOG00000017982	MAPK10 (ENSPCOG00000023059) #36	ARHGAP24 (ENSPCOG00000000502) #37	WDFY3 (ENSPCOG00000022708)	CDS1 (ENSPCOG00000017585)	NKX6-1 (ENSPCOG00000026560)
Bushbaby	MODERN SPECIES	154	FAM13A (ENSOGAG00000003314) #8	HERC3 (ENSOGAG00000003310) #9	NAP1L5 (ENSOGAG00000006132) #10	PYURF (ENSOGAG00000002822) #11	PIGY (ENSOGAG00000025258)	HERC5 (ENSOGAG00000017226) #12	HERC6 (ENSOGAG00000017223) #13	PPM1K (ENSOGAG00000017222) #14	ENSOGAG00000017221 #15	PKD2 (ENSOGAG00000011193) #16	SPP1 (ENSOGAG00000011188) #17	MEPE (ENSOGAG00000011187) #18	IBSP (ENSOGAG00000011181) #19	DMP1 (ENSOGAG00000032756) #20	DSPP (ENSOGAG00000030776) #21	SPARCL1 (ENSOGAG00000009645) #22	NUDT9 (ENSOGAG00000009642) #23	HSD17B11 (ENSOGAG00000009636) #24	HSD17B13 (ENSOGAG00000009634) #25	KLHL8 (ENSOGAG00000009630) #27	ENSOGAG00000031299	ENSOGAG00000009622 #28	SLC10A6 (ENSOGAG00000004425) #33	ENSOGAG00000030382 #35	ENSOGAG00000027610	MAPK10 (ENSOGAG00000014897) #36	ARHGAP24 (ENSOGAG00000014895) #37	ENSOGAG00000015396	CDS1 (ENSOGAG00000032846)	NKX6-1 (ENSOGAG00000000028)	GPAT3 (ENSOGAG00000003516)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00610000087446	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00900000143450	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Tree shrew	MODERN SPECIES	3869																SPARCL1 (ENSTBEG00000009791) #22	NUDT9 (ENSTBEG00000009678) #23	HSD17B11 (ENSTBEG00000017604) #24	HSD17B13 (ENSTBEG00000017515) #25
Glires	ANCESTRAL SPECIES	8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00610000087446	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00900000143450	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Lagomorpha	ANCESTRAL SPECIES	129						ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157350	ENSGT00390000003791	ENSGT00530000063424.b	ENSGT01030000234574.B.c.a	ENSGT00940000160897	ENSGT00940000158223	ENSGT00940000155680.d	ENSGT00950000183015.D #37	ENSGT00940000153692.A #36	ENSGT00940000155133.b #35	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00390000015549 #32
Rabbit	MODERN SPECIES	6	ENSOCUG00000015872 #12	ENSOCUG00000037061	HERC6 (ENSOCUG00000029688) #13	PPM1K (ENSOCUG00000003452) #14	ENSOCUG00000011389 #15	ENSOCUG00000031046	ENSOCUG00000037789 #15	PKD2 (ENSOCUG00000002396) #16	SPP1 (ENSOCUG00000022536) #17	MEPE (ENSOCUG00000001850) #18	ENSOCUG00000037120	IBSP (ENSOCUG00000001046) #19	DMP1 (ENSOCUG00000011753) #20	ENSOCUG00000032976	ENSOCUG00000022074 #21	SPARCL1 (ENSOCUG00000006131) #22	NUDT9 (ENSOCUG00000002670) #23	HSD17B11 (ENSOCUG00000007237) #24	HSD17B13 (ENSOCUG00000007232) #25	ENSOCUG00000035440	HELQ (ENSOCUG00000013294)	ENSOCUG00000031430	ABRAXAS1 (ENSOCUG00000013327)	ENSOCUG00000034356	GPAT3 (ENSOCUG00000012071)	ENSOCUG00000030881	ENSOCUG00000027309	ENSOCUG00000034961	NKX6-1 (ENSOCUG00000028183)	CDS1 (ENSOCUG00000017147)	WDFY3 (ENSOCUG00000017155)
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000158189 #9	ENSGT00610000087446	ENSGT00390000015889 #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000160729.g #15	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00900000143450	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Rodentia_A	ANCESTRAL SPECIES	20									ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hystricomorpha	ANCESTRAL SPECIES	61	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000160368	ENSGT00390000011365.b.f	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hystricomorpha_a	ANCESTRAL SPECIES	68	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000160368	ENSGT00390000011365.b.f	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000160368	ENSGT00390000011365.b.f	ENSGT00390000017018.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Long-tailed chinchilla	MODERN SPECIES	181	AREG (ENSCLAG00000005654)	BTC (ENSCLAG00000005737)	PARM1 (ENSCLAG00000005786)	ENSCLAG00000006211	RCHY1 (ENSCLAG00000006290)	THAP6 (ENSCLAG00000002864)	ODAPH (ENSCLAG00000002892)	CDKL2 (ENSCLAG00000002974)	G3BP2 (ENSCLAG00000003285)	USO1 (ENSCLAG00000003502)	ENSCLAG00000003868	PKD2 (ENSCLAG00000003929) #16	SPP1 (ENSCLAG00000004133) #17	IBSP (ENSCLAG00000004300) #19	DMP1 (ENSCLAG00000004368) #20	SPARCL1 (ENSCLAG00000004209) #22	ENSCLAG00000004292	NUDT9 (ENSCLAG00000004808) #23	HSD17B11 (ENSCLAG00000004877) #24	HSD17B13 (ENSCLAG00000004944) #25	KLHL8 (ENSCLAG00000005233) #27	AFF1 (ENSCLAG00000005537) #28	C4orf36 (ENSCLAG00000005964) #32	SLC10A6 (ENSCLAG00000006091) #33	PTPN13 (ENSCLAG00000006187) #35	MAPK10 (ENSCLAG00000007752) #36	ARHGAP24 (ENSCLAG00000004468) #37	WDFY3 (ENSCLAG00000004977)	CDS1 (ENSCLAG00000006900)	GPAT3 (ENSCLAG00000007713)	ABRAXAS1 (ENSCLAG00000008039)
Degu	MODERN SPECIES	69	PARM1 (ENSODEG00000006846)	RCHY1 (ENSODEG00000010052)	ENSODEG00000007180	ENSODEG00000006617	CDKL2 (ENSODEG00000007091)	ENSODEG00000006601	USO1 (ENSODEG00000007153)	ENSODEG00000007348	PPEF2 (ENSODEG00000007849)	PKD2 (ENSODEG00000007292) #16	SPP1 (ENSODEG00000007013) #17	ENSODEG00000006542	IBSP (ENSODEG00000008571) #19	ENSODEG00000008931	DMP1 (ENSODEG00000007123) #20	SPARCL1 (ENSODEG00000008441) #22	ENSODEG00000007537 #23	ENSODEG00000019391	HSD17B11 (ENSODEG00000007389) #24	HSD17B13 (ENSODEG00000008266) #25	ENSODEG00000006945 #27	ENSODEG00000007146	AFF1 (ENSODEG00000007407) #28	C4orf36 (ENSODEG00000007345) #32	SLC10A6 (ENSODEG00000011019) #33	PTPN13 (ENSODEG00000007351) #35	ENSODEG00000019627	ENSODEG00000009245	ENSODEG00000007996	ENSODEG00000008176	ENSODEG00000019462
Guinea pig	MODERN SPECIES	33								CDKL2 (ENSCPOG00000000399)	G3BP2 (ENSCPOG00000012052)	USO1 (ENSCPOG00000012058)	PPEF2 (ENSCPOG00000007202)	PKD2 (ENSCPOG00000014588) #16	SPP1 (ENSCPOG00000014587) #17	IBSP (ENSCPOG00000035416) #19	DMP1 (ENSCPOG00000009517) #20	SPARCL1 (ENSCPOG00000001455) #22	NUDT9 (ENSCPOG00000009689) #23	HSD17B11 (ENSCPOG00000038248) #24	HSD17B13 (ENSCPOG00000014141) #25	KLHL8 (ENSCPOG00000001491) #27	AFF1 (ENSCPOG00000034568) #28	ENSCPOG00000024866	C4orf36 (ENSCPOG00000003504) #32	SLC10A6 (ENSCPOG00000010363) #33	PTPN13 (ENSCPOG00000007122) #35	MAPK10 (ENSCPOG00000013605) #36	ARHGAP24 (ENSCPOG00000012796) #37	WDFY3 (ENSCPOG00000006746)	CDS1 (ENSCPOG00000030064)	GPAT3 (ENSCPOG00000014802)	ABRAXAS1 (ENSCPOG00000001374)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000017025	THAP6 (ENSHGLG00000043261)	ENSHGLG00000013662	CDKL2 (ENSHGLG00000013277)	G3BP2 (ENSHGLG00000043631)	USO1 (ENSHGLG00000014182)	ENSHGLG00000014204	ENSHGLG00000010362	ENSHGLG00000009525	ENSHGLG00000012710 #16	SPP1 (ENSHGLG00000012567) #17	MEPE (ENSHGLG00000049259) #18	IBSP (ENSHGLG00000011597) #19	DMP1 (ENSHGLG00000047355) #20	ENSHGLG00000041536 #21	SPARCL1 (ENSHGLG00000011108) #22	ENSHGLG00000010648	NUDT9 (ENSHGLG00000010306) #23	HSD17B11 (ENSHGLG00000009549) #24	ENSHGLG00000008840 #25	ENSHGLG00000008487	ENSHGLG00000032120	ENSHGLG00000008155 #27	AFF1 (ENSHGLG00000001384) #28	ENSHGLG00000045541	ENSHGLG00000001308 #32	SLC10A6 (ENSHGLG00000001287) #33	ENSHGLG00000001145 #35	ENSHGLG00000005605	ENSHGLG00000019806	ENSHGLG00000034553
Sciuridae	ANCESTRAL SPECIES	19									ENSGT00940000160729.h.c.a #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Marmotini	ANCESTRAL SPECIES	47									ENSGT00940000160729.h.c.a.b #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Marmotini_b	ANCESTRAL SPECIES	252									ENSGT00940000160729.h.c.a.b #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112
Squirrel	MODERN SPECIES	501										ENSSTOG00000000345 #15	ENSSTOG00000003921 #16	SPP1 (ENSSTOG00000020566) #17	IBSP (ENSSTOG00000001433) #19	DMP1 (ENSSTOG00000024087) #20	DSPP (ENSSTOG00000026093) #21	SPARCL1 (ENSSTOG00000015113) #22	ENSSTOG00000033468	NUDT9 (ENSSTOG00000015105) #23
Arctic ground squirrel	MODERN SPECIES	688								PKD2 (ENSUPAG00010003807) #16	SPP1 (ENSUPAG00010003822) #17	MEPE (ENSUPAG00010003873) #18	IBSP (ENSUPAG00010003876) #19	ENSUPAG00010003887	DMP1 (ENSUPAG00010003903) #20	DSPP (ENSUPAG00010003914) #21	NUDT9 (ENSUPAG00010003929) #23	SPARCL1 (ENSUPAG00010003943) #22	ENSUPAG00010003970	ENSUPAG00010003988 #24
Alpin marmot	MODERN SPECIES	59	PARM1 (ENSMMMG00000006960)	BTC (ENSMMMG00000006965)	AREG (ENSMMMG00000006974)	EREG (ENSMMMG00000006986)	EPGN (ENSMMMG00000006994)	MTHFD2L (ENSMMMG00000007011)	ENSMMMG00000007039	ENSMMMG00000007047	PKD2 (ENSMMMG00000007053) #16	SPP1 (ENSMMMG00000007069) #17	MEPE (ENSMMMG00000007106) #18	IBSP (ENSMMMG00000007115) #19	ENSMMMG00000007131	DMP1 (ENSMMMG00000007142) #20	DSPP (ENSMMMG00000007171) #21	ENSMMMG00000007183 #22	ENSMMMG00000007192	NUDT9 (ENSMMMG00000007237) #23	ENSMMMG00000007336 #24	HSD17B13 (ENSMMMG00000007353) #25	KLHL8 (ENSMMMG00000007382) #27	AFF1 (ENSMMMG00000007447) #28	C4orf36 (ENSMMMG00000007592) #32	SLC10A6 (ENSMMMG00000007611) #33	PTPN13 (ENSMMMG00000007644) #35
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005011669 #13	ENSSVLG00005011933	ENSSVLG00005011981 #15	ENSSVLG00005012160	ENSSVLG00005012281 #15	ENSSVLG00005012923 #15	PPM1K (ENSSVLG00005013073) #14	ENSSVLG00005013226	ENSSVLG00005013446	PKD2 (ENSSVLG00005013606) #16	SPP1 (ENSSVLG00005013941) #17	MEPE (ENSSVLG00005014128) #18	IBSP (ENSSVLG00005014230) #19	DMP1 (ENSSVLG00005014323) #20	DSPP (ENSSVLG00005014439) #21	SPARCL1 (ENSSVLG00005014496) #22	NUDT9 (ENSSVLG00005014673) #23	HSD17B11 (ENSSVLG00005014755) #24	HSD17B13 (ENSSVLG00005014916) #25	ENSSVLG00005015085	ENSSVLG00005015156 #27	AFF1 (ENSSVLG00005015438) #28	C4orf36 (ENSSVLG00005015848) #32	SLC10A6 (ENSSVLG00005015893) #33	PTPN13 (ENSSVLG00005016102) #35	MAPK10 (ENSSVLG00005018125) #36	ARHGAP24 (ENSSVLG00005018879) #37	WDFY3 (ENSSVLG00005019113)	CDS1 (ENSSVLG00005019388)	NKX6-1 (ENSSVLG00005019440)	ENSSVLG00005019498
Rodentia_B	ANCESTRAL SPECIES	19					ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000160729.g #15	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00900000143450	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Kangaroo rat	MODERN SPECIES	442				Ptpn13 (ENSDORG00000009744) #35	Slc10a6 (ENSDORG00000005191) #33	ENSDORG00000026599	1700016H13Rik (ENSDORG00000029011) #32	Aff1 (ENSDORG00000013881) #28	ENSDORG00000028863 #27	ENSDORG00000024277	Hsd17b13 (ENSDORG00000024644) #25	Hsd17b11 (ENSDORG00000014496) #24	Ibsp (ENSDORG00000029980) #19	Dmp1 (ENSDORG00000002208) #20	Dspp (ENSDORG00000027245) #21	Sparcl1 (ENSDORG00000015935) #22	Gm17660 (ENSDORG00000026156)	ENSDORG00000005571 #23	Pkd2 (ENSDORG00000000341) #16	Abcg2 (ENSDORG00000011528) #15	ENSDORG00000001261 #14	Herc6 (ENSDORG00000012896) #13	Map9 (ENSDORG00000025943)	Gucy1a1 (ENSDORG00000004395)	Gucy1b1 (ENSDORG00000004396)	Asic5 (ENSDORG00000004397)	Tdo2 (ENSDORG00000000529)	Ctso (ENSDORG00000002411)	Pdgfc (ENSDORG00000010339)	Glrb (ENSDORG00000007381)	Gria2 (ENSDORG00000004405)
Myomorpha	ANCESTRAL SPECIES	19								ENSGT00710000106792.h	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Muroidea	ANCESTRAL SPECIES	17								ENSGT00710000106792.h	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT01060000248660	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000163522.A.g.b	ENSGT00710000106792.h	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Cricetidae	ANCESTRAL SPECIES	14	ENSGT01060000248660	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000163522.A.g.b	ENSGT00710000106792.h	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000155048	ENSGT00510000047967	ENSGT00390000005497	ENSGT00950000183004.a.a.a.a	ENSGT00390000011228.b.a	ENSGT00940000160985	ENSGT00940000157869	ENSGT00710000106792.h	ENSGT00940000160729.h #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Chinese hamster chok1gshd	MODERN SPECIES	76	ENSCGRG00001016036	Fam3d (ENSCGRG00001000168)	Fam107a (ENSCGRG00001022141)	Acox2 (ENSCGRG00001013444)	Kctd6 (ENSCGRG00001009848)	ENSCGRG00001000571	Abcg3 (ENSCGRG00001004887)	ENSCGRG00001023071	Thoc2l (ENSCGRG00001009811)	Pkd2 (ENSCGRG00001016312) #16	Spp1 (ENSCGRG00001012247) #17	Dspp (ENSCGRG00001007381) #21	Mepe (ENSCGRG00001019599) #18	Ibsp (ENSCGRG00001016273) #19	Dmp1 (ENSCGRG00001013845) #20	Sparcl1 (ENSCGRG00001009590) #22	Gm17660 (ENSCGRG00001013296)	Nudt9 (ENSCGRG00001011849) #23	Hsd17b11 (ENSCGRG00001007844) #24	Hsd17b13 (ENSCGRG00001005914) #25	ENSCGRG00001023510	Klhl8 (ENSCGRG00001018481) #27	Aff1 (ENSCGRG00001015769) #28	1700016H13Rik (ENSCGRG00001009503) #32	Slc10a6 (ENSCGRG00001004482) #33	Ptpn13 (ENSCGRG00001022752) #35	ENSCGRG00001000851	ENSCGRG00001000121	Mapk10 (ENSCGRG00001014731) #36	Arhgap24 (ENSCGRG00001022938) #37	Wdfy3 (ENSCGRG00001020063)
Golden Hamster	MODERN SPECIES	679	ENSMAUG00000011303	Fhit (ENSMAUG00000008107)	Cfap20dc (ENSMAUG00000000388)	Fam3d (ENSMAUG00000019297)	Fam107a (ENSMAUG00000014387)	Acox2 (ENSMAUG00000013454)	Kctd6 (ENSMAUG00000012810)	ENSMAUG00000010500	ENSMAUG00000012640 #15	Pkd2 (ENSMAUG00000006073) #16	Spp1 (ENSMAUG00000018138) #17	Mepe (ENSMAUG00000017270) #18	Ibsp (ENSMAUG00000016877) #19	Dmp1 (ENSMAUG00000005904) #20	Dspp (ENSMAUG00000003984) #21	Sparcl1 (ENSMAUG00000001180) #22	Gm17660 (ENSMAUG00000000460)	Nudt9 (ENSMAUG00000008475) #23	Hsd17b11 (ENSMAUG00000008255) #24	Hsd17b13 (ENSMAUG00000000594) #25	Klhl8 (ENSMAUG00000018112) #27	Aff1 (ENSMAUG00000010241) #28	1700016H13Rik (ENSMAUG00000008304) #32	Slc10a6 (ENSMAUG00000006807) #33	Ptpn13 (ENSMAUG00000000699) #35	Mapk10 (ENSMAUG00000017023) #36	Arhgap24 (ENSMAUG00000014737) #37	Wdfy3 (ENSMAUG00000008899)	Cds1 (ENSMAUG00000000198)	Nkx6-1 (ENSMAUG00000019458)	ENSMAUG00000015928
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000158258	ENSGT01060000248660	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000163522.A.g.b	ENSGT00710000106792.h	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Prairie vole	MODERN SPECIES	349	ENSMOCG00000012017	Zfp326 (ENSMOCG00000002827)	Lrrc8d (ENSMOCG00000022324)	Lrrc8c (ENSMOCG00000017993)	Lrrc8b (ENSMOCG00000015261)	ENSMOCG00000000462	Abcg3 (ENSMOCG00000016328)	ENSMOCG00000012561	Thoc2l (ENSMOCG00000019406)	Pkd2 (ENSMOCG00000017862) #16	ENSMOCG00000001601 #17	Mepe (ENSMOCG00000013370) #18	Ibsp (ENSMOCG00000004131) #19	Dmp1 (ENSMOCG00000010313) #20	ENSMOCG00000005741 #21	Sparcl1 (ENSMOCG00000020685) #22	Gm17660 (ENSMOCG00000000931)	Nudt9 (ENSMOCG00000013057) #23	Hsd17b11 (ENSMOCG00000010971) #24	Hsd17b13 (ENSMOCG00000022291) #25	Klhl8 (ENSMOCG00000010742) #27	Aff1 (ENSMOCG00000017389) #28	1700016H13Rik (ENSMOCG00000015080) #32	Slc10a6 (ENSMOCG00000003945) #33	Ptpn13 (ENSMOCG00000021839) #35	ENSMOCG00000018036	Mapk10 (ENSMOCG00000014375) #36	Arhgap24 (ENSMOCG00000002718) #37	Wdfy3 (ENSMOCG00000001865)	Cds1 (ENSMOCG00000003586)	Nkx6-1 (ENSMOCG00000001725)
Northern American deer mouse	MODERN SPECIES	1	Lrrc8d (ENSPEMG00000021996)	Lrrc8c (ENSPEMG00000013757)	Lrrc8b (ENSPEMG00000005562)	ENSPEMG00000021964	ENSPEMG00000031325	ENSPEMG00000030651 #15	ENSPEMG00000011871	Thoc2l (ENSPEMG00000011125)	ENSPEMG00000026974	Pkd2 (ENSPEMG00000010682) #16	Spp1 (ENSPEMG00000009651) #17	Mepe (ENSPEMG00000009010) #18	Ibsp (ENSPEMG00000025223) #19	Dmp1 (ENSPEMG00000006834) #20	Dspp (ENSPEMG00000025899) #21	ENSPEMG00000004426 #22	Gm17660 (ENSPEMG00000000070)	Nudt9 (ENSPEMG00000018648) #23	Hsd17b11 (ENSPEMG00000016965) #24	Hsd17b13 (ENSPEMG00000014885) #25	Klhl8 (ENSPEMG00000011568) #27	Aff1 (ENSPEMG00000000785) #28	1700016H13Rik (ENSPEMG00000026458) #32	Slc10a6 (ENSPEMG00000016611) #33	Ptpn13 (ENSPEMG00000016673) #35	Mapk10 (ENSPEMG00000011205) #36	Arhgap24 (ENSPEMG00000007830) #37	Wdfy3 (ENSPEMG00000016957)	ENSPEMG00000025914	Cds1 (ENSPEMG00000017042)	Nkx6-1 (ENSPEMG00000015701)
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265	ENSGT00940000162658.a.b	ENSGT00940000154469.a.a.a.a.b.a	ENSGT00710000106792.h	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mus	ANCESTRAL SPECIES	14	ENSGT00940000158258	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265.m	ENSGT00940000154265.n.b.a.a.a	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265.m	ENSGT00940000154265.n.b.a.a.a	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Mouse	MODERN SPECIES	14	Gbp10 (ENSMUSG00000105096)	Gm43302 (ENSMUSG00000079362)	Gbp4 (ENSMUSG00000079363)	Gbp9 (ENSMUSG00000029298)	Gbp8 (ENSMUSG00000034438)	Abcg3 (ENSMUSG00000029299)	Zfp951 (ENSMUSG00000072774)	Zfp33b (ENSMUSG00000120166)	Thoc2l (ENSMUSG00000097392)	Pkd2 (ENSMUSG00000034462) #16	Spp1 (ENSMUSG00000029304) #17	Mepe (ENSMUSG00000053863) #18	Ibsp (ENSMUSG00000029306) #19	Dmp1 (ENSMUSG00000029307) #20	Dspp (ENSMUSG00000053268) #21	Sparcl1 (ENSMUSG00000029309) #22	Gm17660 (ENSMUSG00000091034)	Nudt9 (ENSMUSG00000029310) #23	Hsd17b11 (ENSMUSG00000029311) #24	Hsd17b13 (ENSMUSG00000034528) #25	Klhl8 (ENSMUSG00000029312) #27	Aff1 (ENSMUSG00000029313) #28	1700016H13Rik (ENSMUSG00000029320) #32	Slc10a6 (ENSMUSG00000029321) #33	Ptpn13 (ENSMUSG00000034573) #35	Mapk10 (ENSMUSG00000046709) #36	Arhgap24 (ENSMUSG00000057315) #37	Wdfy3 (ENSMUSG00000043940)	Cds1 (ENSMUSG00000029330)	Nkx6-1 (ENSMUSG00000035187)	Gpat3 (ENSMUSG00000029314)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000158258	ENSGT00940000158611	ENSGT00530000063777.b	ENSGT00940000154043.B	ENSGT00940000159250	ENSGT00940000160703	ENSGT00940000154265.m	ENSGT00940000162658.a.b	ENSGT00710000106792.h	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00700000106112	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Steppe mouse	MODERN SPECIES	2874									Thoc2l (ENSMSIG00000005173)	Pkd2 (ENSMSIG00000005183) #16	Spp1 (ENSMSIG00000005255) #17	Mepe (ENSMSIG00000005264) #18	Ibsp (ENSMSIG00000005280) #19	Dmp1 (ENSMSIG00000005309) #20	Dspp (ENSMSIG00000005338) #21	Sparcl1 (ENSMSIG00000005405) #22	Gm17660 (ENSMSIG00000005443)	Nudt9 (ENSMSIG00000005518) #23	Hsd17b13 (ENSMSIG00000005577) #25	Klhl8 (ENSMSIG00000005685) #27	Aff1 (ENSMSIG00000005805) #28	1700016H13Rik (ENSMSIG00000005958) #32	Slc10a6 (ENSMSIG00000006002) #33	Ptpn13 (ENSMSIG00000006045) #35
spretus	MODERN SPECIES	14	Lrrc8d (MGP_SPRETEiJ_G0028490)	Lrrc8c (MGP_SPRETEiJ_G0028489)	Lrrc8b (MGP_SPRETEiJ_G0028488)	MGP_SPRETEiJ_G0028487	MGP_SPRETEiJ_G0028485	MGP_SPRETEiJ_G0028484	MGP_SPRETEiJ_G0028482	Abcg3 (MGP_SPRETEiJ_G0028481)	Thoc2l (MGP_SPRETEiJ_G0028479)	Pkd2 (MGP_SPRETEiJ_G0028478) #16	Spp1 (MGP_SPRETEiJ_G0028477) #17	Mepe (MGP_SPRETEiJ_G0028476) #18	Ibsp (MGP_SPRETEiJ_G0028475) #19	Dmp1 (MGP_SPRETEiJ_G0028474) #20	Dspp (MGP_SPRETEiJ_G0028473) #21	Sparcl1 (MGP_SPRETEiJ_G0028472) #22	Gm17660 (MGP_SPRETEiJ_G0028471)	Nudt9 (MGP_SPRETEiJ_G0028470) #23	Hsd17b11 (MGP_SPRETEiJ_G0028469) #24	Hsd17b13 (MGP_SPRETEiJ_G0028468) #25	Klhl8 (MGP_SPRETEiJ_G0028467) #27	Aff1 (MGP_SPRETEiJ_G0028466) #28	1700016H13Rik (MGP_SPRETEiJ_G0028465) #32	Slc10a6 (MGP_SPRETEiJ_G0028464) #33	Ptpn13 (MGP_SPRETEiJ_G0028463) #35	Mapk10 (MGP_SPRETEiJ_G0028462) #36	Arhgap24 (MGP_SPRETEiJ_G0028461) #37	Wdfy3 (MGP_SPRETEiJ_G0028460)	Cds1 (MGP_SPRETEiJ_G0028459)	Nkx6-1 (MGP_SPRETEiJ_G0028458)	Gpat3 (MGP_SPRETEiJ_G0028457)
Ryukyu mouse	MODERN SPECIES	14	Lrrc8c (MGP_CAROLIEiJ_G0027491)	Lrrc8b (MGP_CAROLIEiJ_G0027490)	MGP_CAROLIEiJ_G0027489	MGP_CAROLIEiJ_G0027488	Gbp6 (MGP_CAROLIEiJ_G0027487)	MGP_CAROLIEiJ_G0027485	MGP_CAROLIEiJ_G0027484	Abcg3 (MGP_CAROLIEiJ_G0027483)	Thoc2l (MGP_CAROLIEiJ_G0027482)	Pkd2 (MGP_CAROLIEiJ_G0027481) #16	Spp1 (MGP_CAROLIEiJ_G0027480) #17	Mepe (MGP_CAROLIEiJ_G0027479) #18	Ibsp (MGP_CAROLIEiJ_G0027478) #19	Dmp1 (MGP_CAROLIEiJ_G0027477) #20	Dspp (MGP_CAROLIEiJ_G0027476) #21	Sparcl1 (MGP_CAROLIEiJ_G0027475) #22	Gm17660 (MGP_CAROLIEiJ_G0027474)	Nudt9 (MGP_CAROLIEiJ_G0027473) #23	Hsd17b11 (MGP_CAROLIEiJ_G0027472) #24	Hsd17b13 (MGP_CAROLIEiJ_G0027471) #25	Klhl8 (MGP_CAROLIEiJ_G0027470) #27	Aff1 (MGP_CAROLIEiJ_G0027469) #28	1700016H13Rik (MGP_CAROLIEiJ_G0027468) #32	Slc10a6 (MGP_CAROLIEiJ_G0027467) #33	Ptpn13 (MGP_CAROLIEiJ_G0027466) #35	Mapk10 (MGP_CAROLIEiJ_G0027465) #36	Arhgap24 (MGP_CAROLIEiJ_G0027464) #37	Wdfy3 (MGP_CAROLIEiJ_G0027463)	Cds1 (MGP_CAROLIEiJ_G0027462)	Nkx6-1 (MGP_CAROLIEiJ_G0027461)	Gpat3 (MGP_CAROLIEiJ_G0027460)
Shrew mouse	MODERN SPECIES	4	Hfm1 (MGP_PahariEiJ_G0017268)	Zfp644 (MGP_PahariEiJ_G0017267)	Barhl2 (MGP_PahariEiJ_G0017266)	MGP_PahariEiJ_G0017265	Lrrc8d (MGP_PahariEiJ_G0017264)	Lrrc8c (MGP_PahariEiJ_G0017263)	Lrrc8b (MGP_PahariEiJ_G0017262)	MGP_PahariEiJ_G0017261	Thoc2l (MGP_PahariEiJ_G0017260)	Pkd2 (MGP_PahariEiJ_G0017259) #16	Spp1 (MGP_PahariEiJ_G0017258) #17	Mepe (MGP_PahariEiJ_G0017257) #18	Ibsp (MGP_PahariEiJ_G0017256) #19	Dmp1 (MGP_PahariEiJ_G0017255) #20	Dspp (MGP_PahariEiJ_G0017254) #21	Sparcl1 (MGP_PahariEiJ_G0017253) #22	Gm17660 (MGP_PahariEiJ_G0017252)	Nudt9 (MGP_PahariEiJ_G0017251) #23	MGP_PahariEiJ_G0017250 #24	Hsd17b13 (MGP_PahariEiJ_G0017249) #25	Klhl8 (MGP_PahariEiJ_G0017248) #27	Aff1 (MGP_PahariEiJ_G0017247) #28	1700016H13Rik (MGP_PahariEiJ_G0017246) #32	Slc10a6 (MGP_PahariEiJ_G0017245) #33	Ptpn13 (MGP_PahariEiJ_G0017244) #35	Mapk10 (MGP_PahariEiJ_G0017243) #36	Arhgap24 (MGP_PahariEiJ_G0017242) #37	MGP_PahariEiJ_G0017241	Cds1 (MGP_PahariEiJ_G0017240)	Nkx6-1 (MGP_PahariEiJ_G0017239)	Gpat3 (MGP_PahariEiJ_G0017238)
Rat	MODERN SPECIES	5	ENSRNOG00000067007	Gbp6 (ENSRNOG00000068418)	Abcg3 (ENSRNOG00000070774)	Abcg3l3 (ENSRNOG00000069246)	LOC100366030 (ENSRNOG00000049446)	LOC108348123 (ENSRNOG00000043048)	Zfp951 (ENSRNOG00000037421)	Abcg3l1 (ENSRNOG00000069481)	Thoc2l (ENSRNOG00000042340)	Pkd2 (ENSRNOG00000002146) #16	Spp1 (ENSRNOG00000043451) #17	Mepe (ENSRNOG00000002154) #18	Ibsp (ENSRNOG00000002158) #19	Dmp1 (ENSRNOG00000002167) #20	Dspp (ENSRNOG00000002168) #21	Sparcl1 (ENSRNOG00000015093) #22	Scpppq1 (ENSRNOG00000050047)	Nudt9 (ENSRNOG00000002186) #23	Hsd17b11 (ENSRNOG00000002210) #24	Hsd17b13 (ENSRNOG00000002212) #25	Klhl8 (ENSRNOG00000002214) #27	ENSRNOG00000066604	Aff1 (ENSRNOG00000002232) #28	Aff1-as1 (ENSRNOG00000060245) #32	Slc10a6 (ENSRNOG00000002057) #33	Ptpn13 (ENSRNOG00000002061) #35	Ndufb4l1 (ENSRNOG00000034289)	Mapk10 (ENSRNOG00000002079) #36	LOC120096563 (ENSRNOG00000050982)	ENSRNOG00000068459	Arhgap24 (ENSRNOG00000056944) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1601														Dmp1 (ENSNGAG00000009719) #20	Dspp (ENSNGAG00000012207) #21	Sparcl1 (ENSNGAG00000013980) #22	Gm17660 (ENSNGAG00000017913)	Nudt9 (ENSNGAG00000019950) #23	Hsd17b11 (ENSNGAG00000006813) #24	Hsd17b13 (ENSNGAG00000011798) #25	ENSNGAG00000018962 #27	ENSNGAG00000014096 #28	1700016H13Rik (ENSNGAG00000019259) #32	Slc10a6 (ENSNGAG00000000716) #33	Ptpn13 (ENSNGAG00000011185) #35	Mapk10 (ENSNGAG00000009045) #36	Arhgap24 (ENSNGAG00000000035) #37	ENSNGAG00000017344	Wdfy3 (ENSNGAG00000010212)	Cds1 (ENSNGAG00000006898)	ENSNGAG00000012142
Lesser Egyptian jerboa	MODERN SPECIES	85	ENSJJAG00000014366	Tspan5 (ENSJJAG00000018655)	Rap1gds1 (ENSJJAG00000018234)	ENSJJAG00000016218	ENSJJAG00000010217	Unc5c (ENSJJAG00000022036)	Bmpr1b (ENSJJAG00000012811)	ENSJJAG00000003858	ENSJJAG00000024379	Thoc2l (ENSJJAG00000008784)	Pkd2 (ENSJJAG00000023331) #16	Spp1 (ENSJJAG00000018568) #17	Ibsp (ENSJJAG00000000975) #19	Dmp1 (ENSJJAG00000014935) #20	ENSJJAG00000009966 #21	Sparcl1 (ENSJJAG00000000660) #22	Gm17660 (ENSJJAG00000010984)	Nudt9 (ENSJJAG00000011040) #23	Hsd17b11 (ENSJJAG00000017142) #24	Hsd17b13 (ENSJJAG00000006835) #25	ENSJJAG00000011705 #27	Aff1 (ENSJJAG00000022877) #28	1700016H13Rik (ENSJJAG00000007723) #32	Slc10a6 (ENSJJAG00000011681) #33	Ptpn13 (ENSJJAG00000011075) #35	Mapk10 (ENSJJAG00000022409) #36	Arhgap24 (ENSJJAG00000013242) #37	ENSJJAG00000016275	Wdfy3 (ENSJJAG00000016637)	Cds1 (ENSJJAG00000019458)	ENSJJAG00000008039
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000175002	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a #22
Hedgehog	MODERN SPECIES	4766																SPARCL1 (ENSEEUG00000001763) #22
Common shrew	MODERN SPECIES	3689																SPARCL1 (ENSSARG00000010408) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000175002	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Suina	ANCESTRAL SPECIES	22	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Chacoan peccary	MODERN SPECIES	142	TIGD2 (ENSCWAG00000016360)	FAM13A (ENSCWAG00000016443) #8	HERC3 (ENSCWAG00000017308) #9	NAP1L5 (ENSCWAG00000017359) #10	PYURF (ENSCWAG00000017377) #11	ENSCWAG00000017417 #12	HERC6 (ENSCWAG00000017553) #13	PPM1K (ENSCWAG00000017943) #14	ABCG2 (ENSCWAG00000018068)	PKD2 (ENSCWAG00000018149) #16	SPP1 (ENSCWAG00000018219) #17	MEPE (ENSCWAG00000018384) #18	IBSP (ENSCWAG00000018436) #19	DMP1 (ENSCWAG00000018475) #20	ENSCWAG00000018555 #21	SPARCL1 (ENSCWAG00000018606) #22	NUDT9 (ENSCWAG00000018721) #23	HSD17B11 (ENSCWAG00000018762) #24	HSD17B13 (ENSCWAG00000018808) #25	KLHL8 (ENSCWAG00000018874) #27	AFF1 (ENSCWAG00000019010) #28	ENSCWAG00000020279	C4orf36 (ENSCWAG00000020284) #32	ENSCWAG00000020289	SLC10A6 (ENSCWAG00000020294) #33	PTPN13 (ENSCWAG00000007867) #35	MAPK10 (ENSCWAG00000008717) #36	ARHGAP24 (ENSCWAG00000009694) #37	ENSCWAG00000009954	WDFY3 (ENSCWAG00000010017)	CDS1 (ENSCWAG00000010940)
Pig	MODERN SPECIES	16	FAM13A (ENSSSCG00000026196) #8	HERC3 (ENSSSCG00000009208) #9	ENSSSCG00000009211	HERC5 (ENSSSCG00000030548) #12	HERC6 (ENSSSCG00000021712) #13	ENSSSCG00000048526	PPM1K (ENSSSCG00000038867) #14	ABCG2 (ENSSSCG00000009215)	ENSSSCG00000055653	PKD2 (ENSSSCG00000009217) #16	SPP1 (ENSSSCG00000009216) #17	MEPE (ENSSSCG00000028730) #18	IBSP (ENSSSCG00000009219) #19	DMP1 (ENSSSCG00000009220) #20	ENSSSCG00000009221 #21	SPARCL1 (ENSSSCG00000009222) #22	NUDT9 (ENSSSCG00000053724) #23	HSD17B11 (ENSSSCG00000009225) #24	HSD17B13 (ENSSSCG00000057393) #25	KLHL8 (ENSSSCG00000009226) #27	AFF1 (ENSSSCG00000023593) #28	ENSSSCG00000043871	C4orf36 (ENSSSCG00000032190) #32	SLC10A6 (ENSSSCG00000028952) #33	PTPN13 (ENSSSCG00000026655) #35	MAPK10 (ENSSSCG00000009228) #36	ENSSSCG00000058771	ARHGAP24 (ENSSSCG00000009229) #37	WDFY3 (ENSSSCG00000009230)	CDS1 (ENSSSCG00000009231)	NKX6-1 (ENSSSCG00000009232)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00960000190929	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000158189 #9	ENSGT00390000015889.o.b.a.a #11	ENSGT00610000087446.e	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT01100000264116	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00390000015889.o.b.a.a #11	ENSGT00390000015889.o.b.a.b #11	ENSGT00610000087446.e	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT01100000264116	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773
Odontoceti_a	ANCESTRAL SPECIES	26	ENSGT00570000079168.b.b.b #7	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b.a.a #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729.a #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773	ENSGT00390000003125
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000017443.m.a	ENSGT00570000079168.b.b.b #7	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b.a.a #11	ENSGT00940000162703 #12	ENSGT00940000156633 #14	ENSGT00940000160729.a #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT01100000266223	ENSGT00770000121728	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b	ENSGT00390000010773	ENSGT00390000003125
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00570000079168.b.b.b #7	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.o.b.a.a #11	ENSGT00940000162703 #12	ENSGT00940000156633 #14	ENSGT00940000160729.a #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT01100000266223	ENSGT00770000121728	ENSGT00940000166403.b.a	ENSGT00940000160886.a.a.a	ENSGT00940000159346	ENSGT00390000004179	ENSGT00940000161766	ENSGT00940000160268	ENSGT00390000004697	ENSGT00940000156495	ENSGT00940000156418	ENSGT00390000012736	ENSGT00390000009391.a	ENSGT00940000154672.i.b
Narwhal	MODERN SPECIES	307	TIGD2 (ENSMMNG00015011054)	ENSMMNG00015011038	FAM13A (ENSMMNG00015010904) #8	NAP1L5 (ENSMMNG00015010819) #10	HERC3 (ENSMMNG00015010732) #9	ENSMMNG00015010704 #11	HERC5 (ENSMMNG00015010595) #12	PPM1K (ENSMMNG00015010529) #14	ENSMMNG00015010427 #15	PKD2 (ENSMMNG00015010375) #16	SPP1 (ENSMMNG00015010339) #17	MEPE (ENSMMNG00015010312) #18	IBSP (ENSMMNG00015010295) #19	DMP1 (ENSMMNG00015010277) #20	ENSMMNG00015010260 #21	SPARCL1 (ENSMMNG00015010232) #22	NUDT9 (ENSMMNG00015010205) #23	ENSMMNG00015010191	SMIM31 (ENSMMNG00015010178)	ENSMMNG00015010166	ENSMMNG00015010157	MARCHF1 (ENSMMNG00015010133)	TMA16 (ENSMMNG00015010097)	NPY5R (ENSMMNG00015010079)	NPY1R (ENSMMNG00015010072)	NAF1 (ENSMMNG00015010060)	FSTL5 (ENSMMNG00015009982)	RAPGEF2 (ENSMMNG00015009895)	C4orf45 (ENSMMNG00015009860)	FNIP2 (ENSMMNG00015013476)	ENSMMNG00015013450
Beluga whale	MODERN SPECIES	13	ENSDLEG00000000521	GPRIN3 (ENSDLEG00000000510) #7	FAM13A (ENSDLEG00000000334) #8	NAP1L5 (ENSDLEG00000000280) #10	HERC3 (ENSDLEG00000000176) #9	ENSDLEG00000004711 #11	HERC5 (ENSDLEG00000004491) #12	PPM1K (ENSDLEG00000004439) #14	ABCG2 (ENSDLEG00000004291) #15	PKD2 (ENSDLEG00000004214) #16	SPP1 (ENSDLEG00000004195) #17	MEPE (ENSDLEG00000004183) #18	IBSP (ENSDLEG00000004177) #19	DMP1 (ENSDLEG00000004170) #20	ENSDLEG00000004155 #21	SPARCL1 (ENSDLEG00000004137) #22	NUDT9 (ENSDLEG00000004125) #23	ENSDLEG00000004121	ENSDLEG00000004116	ENSDLEG00000004102	MARCH1 (ENSDLEG00000004098)	ENSDLEG00000004095	TMA16 (ENSDLEG00000004088)	NPY5R (ENSDLEG00000004085)	NPY1R (ENSDLEG00000004078)	NAF1 (ENSDLEG00000004067)	ENSDLEG00000004059	ENSDLEG00000004050	FSTL5 (ENSDLEG00000004031)	RAPGEF2 (ENSDLEG00000003915)	ENSDLEG00000003878
Vaquita	MODERN SPECIES	16	GPRIN3 (ENSPSNG00000000984) #7	FAM13A (ENSPSNG00000001226) #8	HERC3 (ENSPSNG00000001484) #9	NAP1L5 (ENSPSNG00000001558) #10	ENSPSNG00000001581 #11	ENSPSNG00000001604 #12	ENSPSNG00000001627 #12	PPM1K (ENSPSNG00000001678) #14	ENSPSNG00000001718 #15	PKD2 (ENSPSNG00000001761) #16	SPP1 (ENSPSNG00000001823) #17	MEPE (ENSPSNG00000001894) #18	IBSP (ENSPSNG00000001916) #19	DMP1 (ENSPSNG00000001944) #20	ENSPSNG00000001960	SPARCL1 (ENSPSNG00000001983) #22	NUDT9 (ENSPSNG00000002014) #23	ENSPSNG00000002041	SMIM31 (ENSPSNG00000002054)	ENSPSNG00000002066	MARCHF1 (ENSPSNG00000002101)	ENSPSNG00000002131	TMA16 (ENSPSNG00000002152)	NPY5R (ENSPSNG00000002172)	NPY1R (ENSPSNG00000002184)	NAF1 (ENSPSNG00000002202)	FSTL5 (ENSPSNG00000002264)	RAPGEF2 (ENSPSNG00000002798)	ENSPSNG00000003526	C4orf45 (ENSPSNG00000003555)	FNIP2 (ENSPSNG00000003659)
Dolphin	MODERN SPECIES	2635																SPARCL1 (ENSTTRG00000004209) #22	NUDT9 (ENSTTRG00000004207) #23	ENSTTRG00000004203 #24
Sperm whale	MODERN SPECIES	18	FAM13A (ENSPCTG00005002764) #8	NAP1L5 (ENSPCTG00005002699) #10	HERC3 (ENSPCTG00005002665) #9	PYURF (ENSPCTG00005002646) #11	PIGY (ENSPCTG00005002636)	HERC5 (ENSPCTG00005002573) #12	PPM1K (ENSPCTG00005002532) #14	ABCG2 (ENSPCTG00005002498)	ENSPCTG00005002475	PKD2 (ENSPCTG00005002432) #16	SPP1 (ENSPCTG00005002383) #17	MEPE (ENSPCTG00005002360) #18	IBSP (ENSPCTG00005002349) #19	DMP1 (ENSPCTG00005002286) #20	ENSPCTG00005002264 #21	SPARCL1 (ENSPCTG00005002237) #22	NUDT9 (ENSPCTG00005002214) #23	APELA (ENSPCTG00005002196)	SMIM31 (ENSPCTG00005002184)	MARCH1 (ENSPCTG00005002160)	TMA16 (ENSPCTG00005002143)	NPY5R (ENSPCTG00005002132)	NPY1R (ENSPCTG00005002122)	NAF1 (ENSPCTG00005002113)	FSTL5 (ENSPCTG00005002028)	RAPGEF2 (ENSPCTG00005001911)	C4orf45 (ENSPCTG00005001862)	FNIP2 (ENSPCTG00005001615)	PPID (ENSPCTG00005001500)	ETFDH (ENSPCTG00005001436)	C7H4orf46 (ENSPCTG00005001404)
Blue whale	MODERN SPECIES	16	TIGD2 (ENSBMSG00010005929)	FAM13A (ENSBMSG00010005710) #8	NAP1L5 (ENSBMSG00010005642) #10	ENSBMSG00010005639 #9	ENSBMSG00010005628 #11	ENSBMSG00010005623	HERC5 (ENSBMSG00010005586) #12	PPM1K (ENSBMSG00010005504) #14	ENSBMSG00010005495 #15	ENSBMSG00010005487	PKD2 (ENSBMSG00010005474) #16	SPP1 (ENSBMSG00010005446) #17	MEPE (ENSBMSG00010005430) #18	IBSP (ENSBMSG00010005424) #19	DMP1 (ENSBMSG00010005409) #20	SPARCL1 (ENSBMSG00010005387) #22	NUDT9 (ENSBMSG00010005371) #23	ENSBMSG00010005361	SMIM31 (ENSBMSG00010005356)	ENSBMSG00010005350	MARCHF1 (ENSBMSG00010005336)	ENSBMSG00010005317	NPY5R (ENSBMSG00010005278)	NPY1R (ENSBMSG00010005263)	ENSBMSG00010005252	ENSBMSG00010005245	FSTL5 (ENSBMSG00010005190)	ENSBMSG00010005166	ENSBMSG00010005157	ENSBMSG00010005149	RAPGEF2 (ENSBMSG00010005109)
Pecora	ANCESTRAL SPECIES	15	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Percora_a	ANCESTRAL SPECIES	18	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00390000006247.e.a	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000000483.b	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00390000006247.e.a	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153112.D.c.a	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897
Goat	MODERN SPECIES	25	NSG1 (ENSCHIG00000008294)	STX18 (ENSCHIG00000020439)	MSX1 (ENSCHIG00000014094)	CYTL1 (ENSCHIG00000001722)	STK32B (ENSCHIG00000021477)	EVC2 (ENSCHIG00000014543)	EVC (ENSCHIG00000024455)	CRMP1 (ENSCHIG00000017354)	ENSCHIG00000008410	JAKMIP1 (ENSCHIG00000022605)	ENSCHIG00000014433	WFS1 (ENSCHIG00000025731)	PPP2R2C (ENSCHIG00000016344)	DMP1 (ENSCHIG00000024137) #20	DSPP (ENSCHIG00000016631) #21	SPARCL1 (ENSCHIG00000007139) #22	NUDT9 (ENSCHIG00000020346) #23	HSD17B11 (ENSCHIG00000011780) #24	HSD17B13 (ENSCHIG00000020775) #25	KLHL8 (ENSCHIG00000015495) #27	AFF1 (ENSCHIG00000008450) #28	C4orf36 (ENSCHIG00000020322) #32	SLC10A6 (ENSCHIG00000014126) #33	ENSCHIG00000001076	PTPN13 (ENSCHIG00000021006) #35	ENSCHIG00000013818	ENSCHIG00000003527	ENSCHIG00000018060	MAPK10 (ENSCHIG00000012374) #36	ARHGAP24 (ENSCHIG00000022792) #37	ENSCHIG00000024192
Rambouillet Sheep	MODERN SPECIES	22	MSX1 (ENSOARG00020024231)	CYTL1 (ENSOARG00020024206)	STK32B (ENSOARG00020024051)	EVC2 (ENSOARG00020024014)	EVC (ENSOARG00020023672)	CRMP1 (ENSOARG00020023499)	ENSOARG00020023479	ENSOARG00020023467	JAKMIP1 (ENSOARG00020023163)	WFS1 (ENSOARG00020023129)	PPP2R2C (ENSOARG00020023090)	ENSOARG00020022932	ENSOARG00020022892	DMP1 (ENSOARG00020022854) #20	DSPP (ENSOARG00020022784) #21	SPARCL1 (ENSOARG00020022579) #22	NUDT9 (ENSOARG00020022482) #23	ENSOARG00020022244 #25	ENSOARG00020021968 #27	AFF1 (ENSOARG00020021386) #28	C4orf36 (ENSOARG00020021226) #32	SLC10A6 (ENSOARG00020021292) #33	PTPN13 (ENSOARG00020019325) #35	ENSOARG00020019244	MAPK10 (ENSOARG00020018223) #36	ARHGAP24 (ENSOARG00020017927) #37	ENSOARG00020017855	WDFY3 (ENSOARG00020015498)	CDS1 (ENSOARG00020015132)	NKX6-1 (ENSOARG00020015056)	GPAT3 (ENSOARG00020014882)
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000014853	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00390000006247.e.a	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Bos	ANCESTRAL SPECIES	15	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00940000158464.k	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.n #35	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00940000158464.k	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.n.a #35	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223
Hybrid Bos Indicus	MODERN SPECIES	25	STK32B (ENSBIXG00005002027)	ENSBIXG00005014592	EVC2 (ENSBIXG00005014669)	ENSBIXG00005014684	EVC (ENSBIXG00005014829)	CRMP1 (ENSBIXG00005002160)	ENSBIXG00005014962	JAKMIP1 (ENSBIXG00005015199)	ENSBIXG00005015285	WFS1 (ENSBIXG00005015314)	PPP2R2C (ENSBIXG00005015372)	ENSBIXG00005015774	ENSBIXG00005016537	DMP1 (ENSBIXG00005016673) #20	ENSBIXG00005016723 #21	SPARCL1 (ENSBIXG00005007329) #22	NUDT9 (ENSBIXG00005016830) #23	ENSBIXG00005016839	HSD17B11 (ENSBIXG00005005731) #24	ENSBIXG00005016946	KLHL8 (ENSBIXG00005017118) #27	AFF1 (ENSBIXG00005017161) #28	C4orf36 (ENSBIXG00005017196) #32	ENSBIXG00005017214	ENSBIXG00005002799	SLC10A6 (ENSBIXG00005017247) #33	ENSBIXG00005017276	ENSBIXG00005017372 #35	ENSBIXG00005002829	ENSBIXG00005005513	MAPK10 (ENSBIXG00005018360) #36
Cow	MODERN SPECIES	25	MSX1 (ENSBTAG00000010875)	CYTL1 (ENSBTAG00000011163)	STK32B (ENSBTAG00000015409)	EVC2 (ENSBTAG00000004277)	EVC (ENSBTAG00000004287)	CRMP1 (ENSBTAG00000004292)	ENSBTAG00000021729	JAKMIP1 (ENSBTAG00000011170)	ENSBTAG00000054994	WFS1 (ENSBTAG00000046671)	PPP2R2C (ENSBTAG00000020598)	ENSBTAG00000006508	ENSBTAG00000017829	DMP1 (ENSBTAG00000019132) #20	DSPP (ENSBTAG00000045714) #21	SPARCL1 (ENSBTAG00000004094) #22	NUDT9 (ENSBTAG00000011354) #23	ENSBTAG00000052418	HSD17B11 (ENSBTAG00000006307) #24	HSD17B13 (ENSBTAG00000031679) #25	ENSBTAG00000047432	KLHL8 (ENSBTAG00000002455) #27	AFF1 (ENSBTAG00000018488) #28	C4orf36 (ENSBTAG00000051915) #32	ENSBTAG00000050963	ENSBTAG00000047514 #33	PTPN13 (ENSBTAG00000014947) #35	ENSBTAG00000050276	ENSBTAG00000045839	MAPK10 (ENSBTAG00000020048) #36	ARHGAP24 (ENSBTAG00000003959) #37
Bos_a	ANCESTRAL SPECIES	21	ENSGT00940000161623	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00940000154127.B	ENSGT01030000234527.A.a.b.b.b	ENSGT00390000003220	ENSGT00940000153713.B.c	ENSGT00940000158464.k	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT01030000234638.b.a.b.q.a.b	ENSGT01030000234638.b.a.b.q.a.a	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT01100000263481.n.a.b.a.b.b.a.a.a.b.a.a.a.b.b	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b.n #35	ENSGT00550000075088.a.a.ob.b	ENSGT00390000006247.e.a	ENSGT00940000154222.d.b.d.g.a.a	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d
Domestic yak	MODERN SPECIES	25	CYTL1 (ENSBGRG00000010429)	STK32B (ENSBGRG00000010525)	EVC2 (ENSBGRG00000010733)	EVC (ENSBGRG00000011517)	ENSBGRG00000012265	CRMP1 (ENSBGRG00000012288)	C4orf50 (ENSBGRG00000012490)	JAKMIP1 (ENSBGRG00000012631)	ENSBGRG00000013050	WFS1 (ENSBGRG00000013121)	PPP2R2C (ENSBGRG00000013226)	ENSBGRG00000013414	ENSBGRG00000013725	DMP1 (ENSBGRG00000014603) #20	ENSBGRG00000014783 #21	SPARCL1 (ENSBGRG00000014840) #22	NUDT9 (ENSBGRG00000014966) #23	HSD17B11 (ENSBGRG00000015134) #24	ENSBGRG00000015430	KLHL8 (ENSBGRG00000015486) #27	AFF1 (ENSBGRG00000015861) #28	C4orf36 (ENSBGRG00000016444) #32	SLC10A6 (ENSBGRG00000016493) #33	PTPN13 (ENSBGRG00000016575) #35	ENSBGRG00000016870	ENSBGRG00000016888	MAPK10 (ENSBGRG00000017007) #36	ARHGAP24 (ENSBGRG00000018148) #37	ENSBGRG00000018396	WDFY3 (ENSBGRG00000018444)	ENSBGRG00000020638
Wild yak	MODERN SPECIES	1666															DSPP (ENSBMUG00000025197) #21	SPARCL1 (ENSBMUG00000025191) #22	NUDT9 (ENSBMUG00000025184) #23	HSD17B11 (ENSBMUG00000025178) #24	HSD17B13 (ENSBMUG00000025176) #25	ENSBMUG00000025168	KLHL8 (ENSBMUG00000025163) #27	AFF1 (ENSBMUG00000025155) #28
American bison	MODERN SPECIES	2926															DSPP (ENSBBBG00000023372) #21	SPARCL1 (ENSBBBG00000023397) #22	NUDT9 (ENSBBBG00000023429) #23	HSD17B11 (ENSBBBG00000023455) #24	HSD17B13 (ENSBBBG00000023490) #25	ENSBBBG00000023511	KLHL8 (ENSBBBG00000023566) #27	AFF1 (ENSBBBG00000006166) #28	C4orf36 (ENSBBBG00000023619) #32	SLC10A6 (ENSBBBG00000023627) #33	PTPN13 (ENSBBBG00000000291) #35	ENSBBBG00000008209	ENSBBBG00000006300
Siberian musk deer	MODERN SPECIES	1273	NSG1 (ENSMMSG00000022287)	STX18 (ENSMMSG00000022315)	MSX1 (ENSMMSG00000022332)	CYTL1 (ENSMMSG00000022341)	STK32B (ENSMMSG00000022366)	EVC2 (ENSMMSG00000014469)	EVC (ENSMMSG00000014574)	CRMP1 (ENSMMSG00000014696)	ENSMMSG00000014897	JAKMIP1 (ENSMMSG00000014962)	WFS1 (ENSMMSG00000015467)	PPP2R2C (ENSMMSG00000015500)	ENSMMSG00000015548	DMP1 (ENSMMSG00000015722) #20	ENSMMSG00000015791 #21	SPARCL1 (ENSMMSG00000015840) #22	NUDT9 (ENSMMSG00000015898) #23	HSD17B11 (ENSMMSG00000015946) #24	HSD17B13 (ENSMMSG00000016012) #25	KLHL8 (ENSMMSG00000016116) #27	AFF1 (ENSMMSG00000016294) #28	C4orf36 (ENSMMSG00000016405) #32	SLC10A6 (ENSMMSG00000016456) #33	PTPN13 (ENSMMSG00000016540) #35	MAPK10 (ENSMMSG00000016767) #36	ARHGAP24 (ENSMMSG00000017490) #37	WDFY3 (ENSMMSG00000017648)	CDS1 (ENSMMSG00000018080)	NKX6-1 (ENSMMSG00000018122)
Yarkand deer	MODERN SPECIES	29	MSX1 (ENSCHYG00000020422)	CYTL1 (ENSCHYG00000020364)	STK32B (ENSCHYG00000020103)	EVC2 (ENSCHYG00000019186)	EVC (ENSCHYG00000019037)	CRMP1 (ENSCHYG00000018819)	ENSCHYG00000018775	JAKMIP1 (ENSCHYG00000018225)	ENSCHYG00000018159	WFS1 (ENSCHYG00000018113)	PPP2R2C (ENSCHYG00000017967)	ENSCHYG00000017283	ENSCHYG00000016162	DMP1 (ENSCHYG00000015748) #20	ENSCHYG00000015331 #21	SPARCL1 (ENSCHYG00000015173) #22	ENSCHYG00000014882 #23	ENSCHYG00000014859	HSD17B11 (ENSCHYG00000014635) #24	HSD17B13 (ENSCHYG00000014556) #25	KLHL8 (ENSCHYG00000014019) #27	AFF1 (ENSCHYG00000013429) #28	C4orf36 (ENSCHYG00000013363) #32	SLC10A6 (ENSCHYG00000013255) #33	PTPN13 (ENSCHYG00000011843) #35	ENSCHYG00000011708	ENSCHYG00000011686	ENSCHYG00000011591	ENSCHYG00000011569	MAPK10 (ENSCHYG00000010214) #36	ARHGAP24 (ENSCHYG00000009997) #37
Camelidae	ANCESTRAL SPECIES	44	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.o.b #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Alpaca	MODERN SPECIES	1539													MEPE (ENSVPAG00000004019) #18	IBSP (ENSVPAG00000004018) #19	DMP1 (ENSVPAG00000004015) #20	SPARCL1 (ENSVPAG00000004014) #22	NUDT9 (ENSVPAG00000004012) #23	HSD17B11 (ENSVPAG00000004011) #24	HSD17B13 (ENSVPAG00000004010) #25	KLHL8 (ENSVPAG00000004009) #27	AFF1 (ENSVPAG00000004007) #28	C4orf36 (ENSVPAG00000004006) #32
Arabian camel	MODERN SPECIES	11	TIGD2 (ENSCDRG00005001330)	FAM13A (ENSCDRG00005000724) #8	NAP1L5 (ENSCDRG00005000636) #10	HERC3 (ENSCDRG00005000574) #9	PYURF (ENSCDRG00005000542) #11	HERC5 (ENSCDRG00005000439) #12	HERC6 (ENSCDRG00005000240) #13	PPM1K (ENSCDRG00005000180) #14	ABCG2 (ENSCDRG00005000132)	ENSCDRG00005000091 #16	SPP1 (ENSCDRG00005007782) #17	MEPE (ENSCDRG00005007644) #18	IBSP (ENSCDRG00005007598) #19	DMP1 (ENSCDRG00005007545) #20	ENSCDRG00005007492 #21	SPARCL1 (ENSCDRG00005007410) #22	NUDT9 (ENSCDRG00005007374) #23	HSD17B11 (ENSCDRG00005007280) #24	HSD17B13 (ENSCDRG00005007167) #25	KLHL8 (ENSCDRG00005006939) #27	AFF1 (ENSCDRG00005006432) #28	C4orf36 (ENSCDRG00005006366) #32	SLC10A6 (ENSCDRG00005006339) #33	ENSCDRG00005006322	PTPN13 (ENSCDRG00005005955) #35	MAPK10 (ENSCDRG00005005394) #36	ARHGAP24 (ENSCDRG00005005261) #37	ENSCDRG00005005241	WDFY3 (ENSCDRG00005004624)	CDS1 (ENSCDRG00005004562)	ENSCDRG00005004541
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00390000015889.p #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Carnivora	ANCESTRAL SPECIES	5	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000158189 #9	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Ursidae	ANCESTRAL SPECIES	17	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00390000011666.n.a	ENSGT00940000175002	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Ursus	ANCESTRAL SPECIES	78	ENSGT00940000158189.c #9	ENSGT00390000015889.o.b #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00390000011666.n.a	ENSGT00940000175002	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37
Polar bear	MODERN SPECIES	285												MEPE (ENSUMAG00000025453) #18	IBSP (ENSUMAG00000025452) #19	DMP1 (ENSUMAG00000025451) #20	DSPP (ENSUMAG00000025449) #21	SPARCL1 (ENSUMAG00000025448) #22	NUDT9 (ENSUMAG00000025447) #23	HSD17B11 (ENSUMAG00000025445) #24	HSD17B13 (ENSUMAG00000025444) #25	KLHL8 (ENSUMAG00000025441) #27	AFF1 (ENSUMAG00000025433) #28	C4orf36 (ENSUMAG00000025430) #32	SLC10A6 (ENSUMAG00000025429) #33	PTPN13 (ENSUMAG00000024943) #35	MAPK10 (ENSUMAG00000024932) #36	ENSUMAG00000024931	ARHGAP24 (ENSUMAG00000024930) #37	ENSUMAG00000024929
American black bear	MODERN SPECIES	1544																SPARCL1 (ENSUAMG00000025818) #22	NUDT9 (ENSUAMG00000025816) #23	HSD17B11 (ENSUAMG00000025815) #24	HSD17B13 (ENSUAMG00000025814) #25	ENSUAMG00000025810
Giant Panda	MODERN SPECIES	2	HERC3 (ENSAMEG00000002929) #9	NAP1L5 (ENSAMEG00000020110) #10	ENSAMEG00000023876 #11	PIGY (ENSAMEG00000030156)	HERC5 (ENSAMEG00000003022) #12	HERC6 (ENSAMEG00000003054) #13	ENSAMEG00000020111	PPM1K (ENSAMEG00000003084) #14	ABCG2 (ENSAMEG00000003095)	PKD2 (ENSAMEG00000003126) #16	SPP1 (ENSAMEG00000003156) #17	MEPE (ENSAMEG00000003176) #18	IBSP (ENSAMEG00000003185) #19	DMP1 (ENSAMEG00000003211) #20	DSPP (ENSAMEG00000030550) #21	SPARCL1 (ENSAMEG00000003222) #22	NUDT9 (ENSAMEG00000003244) #23	HSD17B11 (ENSAMEG00000003269) #24	HSD17B13 (ENSAMEG00000003284) #25	KLHL8 (ENSAMEG00000003314) #27	AFF1 (ENSAMEG00000003337) #28	C4orf36 (ENSAMEG00000029259) #32	SLC10A6 (ENSAMEG00000003408) #33	PTPN13 (ENSAMEG00000003426) #35	ENSAMEG00000020112	ENSAMEG00000024509	MAPK10 (ENSAMEG00000003514) #36	ARHGAP24 (ENSAMEG00000003558) #37	ENSAMEG00000029199	WDFY3 (ENSAMEG00000003579)	CDS1 (ENSAMEG00000003633)
Mustelinae	ANCESTRAL SPECIES	50	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.o.b #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37
Ferret	MODERN SPECIES	214	ENSMPUG00000019098	TIGD2 (ENSMPUG00000019104)	FAM13A (ENSMPUG00000002154) #8	HERC3 (ENSMPUG00000002161) #9	NAP1L5 (ENSMPUG00000002166) #10	HERC5 (ENSMPUG00000002169) #12	HERC6 (ENSMPUG00000002187) #13	PPM1K (ENSMPUG00000002192) #14	ENSMPUG00000002193 #15	PKD2 (ENSMPUG00000002232) #16	SPP1 (ENSMPUG00000002233) #17	MEPE (ENSMPUG00000002234) #18	IBSP (ENSMPUG00000002238) #19	DMP1 (ENSMPUG00000002241) #20	DSPP (ENSMPUG00000002243) #21	SPARCL1 (ENSMPUG00000002250) #22	NUDT9 (ENSMPUG00000002258) #23	HSD17B11 (ENSMPUG00000002261) #24	KLHL8 (ENSMPUG00000002266) #27	AFF1 (ENSMPUG00000002270) #28	C4orf36 (ENSMPUG00000002275) #32	SLC10A6 (ENSMPUG00000002278) #33	PTPN13 (ENSMPUG00000002281) #35	MAPK10 (ENSMPUG00000002290) #36	ARHGAP24 (ENSMPUG00000002295) #37
American mink	MODERN SPECIES	390														DMP1 (ENSNVIG00000024864) #20	ENSNVIG00000024866 #21	SPARCL1 (ENSNVIG00000024868) #22	NUDT9 (ENSNVIG00000024870) #23	HSD17B11 (ENSNVIG00000024872) #24	HSD17B13 (ENSNVIG00000024873) #25	KLHL8 (ENSNVIG00000024877) #27	AFF1 (ENSNVIG00000024881) #28	CD036 (ENSNVIG00000024883) #32	SOAT (ENSNVIG00000024884) #33	PTPN13 (ENSNVIG00000024886) #35	ENSNVIG00000024896	ENSNVIG00000024897
Canidae	ANCESTRAL SPECIES	40	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00910000147952	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00950000182922.a.a.a.b.a.b.a.b.a.c	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT00940000155440.d.j
Dog	MODERN SPECIES	25	FAM13A (ENSCAFG00845018414) #8	NAP1L5 (ENSCAFG00845018141) #10	HERC3 (ENSCAFG00845017244) #9	PYURF (ENSCAFG00845017065) #11	HERC5 (ENSCAFG00845016977) #12	HERC6 (ENSCAFG00845016852) #13	PPM1K (ENSCAFG00845016529) #14	ABCG2 (ENSCAFG00845016353)	PKD2 (ENSCAFG00845016245) #16	SPP1 (ENSCAFG00845016131) #17	MEPE (ENSCAFG00845015931) #18	IBSP (ENSCAFG00845015862) #19	ENSCAFG00845015806	DMP1 (ENSCAFG00845015764) #20	DSPP (ENSCAFG00845015696) #21	SPARCL1 (ENSCAFG00845015583) #22	NUDT9 (ENSCAFG00845015495) #23	HSD17B13 (ENSCAFG00845015328) #24	ENSCAFG00845015190	KLHL8 (ENSCAFG00845015090) #27	AFF1 (ENSCAFG00845014804) #28	C4orf36 (ENSCAFG00845024944) #32	SLC10A6 (ENSCAFG00845024905) #33	PTPN13 (ENSCAFG00845024290) #35	ENSCAFG00845024181	ENSCAFG00845024149	MAPK10 (ENSCAFG00845023201) #36	ENSCAFG00845022736	ARHGAP24 (ENSCAFG00845022578) #37	WDFY3 (ENSCAFG00845022217)	CDS1 (ENSCAFG00845022114)
Dingo	MODERN SPECIES	342	ENSCAFG00020004515 #8	HERC3 (ENSCAFG00020004591) #9	NAP1L5 (ENSCAFG00020007002) #10	ENSCAFG00020007012 #11	HERC5 (ENSCAFG00020007018) #12	HERC6 (ENSCAFG00020007136) #13	PPM1K (ENSCAFG00020007240) #14	ABCG2 (ENSCAFG00020007278)	ENSCAFG00020008067	PKD2 (ENSCAFG00020008069) #16	SPP1 (ENSCAFG00020008078) #17	MEPE (ENSCAFG00020008084) #18	IBSP (ENSCAFG00020008106) #19	DMP1 (ENSCAFG00020008108) #20	DSPP (ENSCAFG00020008112) #21	SPARCL1 (ENSCAFG00020008125) #22	NUDT9 (ENSCAFG00020008135) #23	HSD17B11 (ENSCAFG00020008138) #24	HSD17B13 (ENSCAFG00020008141) #25	ENSCAFG00020008146	KLHL8 (ENSCAFG00020008159) #27	AFF1 (ENSCAFG00020008224) #28	SLC10A6 (ENSCAFG00020008242) #33	PTPN13 (ENSCAFG00020008350) #35	ENSCAFG00020009916	MAPK10 (ENSCAFG00020009946) #36	ARHGAP24 (ENSCAFG00020010087) #37	WDFY3 (ENSCAFG00020010121)	CDS1 (ENSCAFG00020010454)	NKX6-1 (ENSCAFG00020010474)	ENSCAFG00020010476
Red fox	MODERN SPECIES	27	HERC3 (ENSVVUG00000007845) #9	NAP1L5 (ENSVVUG00000007916) #10	ENSVVUG00000007920	ENSVVUG00000007923 #11	HERC5 (ENSVVUG00000007941) #12	HERC6 (ENSVVUG00000008207) #13	PPM1K (ENSVVUG00000008232) #14	ABCG2 (ENSVVUG00000008238)	ENSVVUG00000008260	PKD2 (ENSVVUG00000008312) #16	SPP1 (ENSVVUG00000009167) #17	MEPE (ENSVVUG00000009185) #18	IBSP (ENSVVUG00000009187) #19	DMP1 (ENSVVUG00000009195) #20	ENSVVUG00000009196 #21	SPARCL1 (ENSVVUG00000009202) #22	NUDT9 (ENSVVUG00000009210) #23	HSD17B11 (ENSVVUG00000009214) #24	HSD17B13 (ENSVVUG00000009228) #25	KLHL8 (ENSVVUG00000009232) #27	AFF1 (ENSVVUG00000009263) #28	C4orf36 (ENSVVUG00000009294) #32	SLC10A6 (ENSVVUG00000009303) #33	PTPN13 (ENSVVUG00000009481) #35	ENSVVUG00000013206	MAPK10 (ENSVVUG00000013277) #36	ARHGAP24 (ENSVVUG00000013997) #37	ENSVVUG00000014011	ENSVVUG00000014016	WDFY3 (ENSVVUG00000014061)	CDS1 (ENSVVUG00000014709)
Felidae	ANCESTRAL SPECIES	4	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509.c #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00390000005534.b.b.c.b.a.a.b.a.a	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509.c #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
Tiger	MODERN SPECIES	44	HERC3 (ENSPTIG00000018458) #9	NAP1L5 (ENSPTIG00000001643) #10	PYURF (ENSPTIG00000020767) #11	PIGY (ENSPTIG00000001673)	ENSPTIG00000002645 #12	HERC6 (ENSPTIG00000005611) #13	ENSPTIG00000016771	PPM1K (ENSPTIG00000017091) #14	ENSPTIG00000018743 #15	ENSPTIG00000020828 #16	SPP1 (ENSPTIG00000021399) #17	MEPE (ENSPTIG00000021972) #18	IBSP (ENSPTIG00000022053) #19	DMP1 (ENSPTIG00000022087) #20	DSPP (ENSPTIG00000022109) #21	SPARCL1 (ENSPTIG00000001327) #22	NUDT9 (ENSPTIG00000006560) #23	HSD17B11 (ENSPTIG00000007742) #24	HSD17B13 (ENSPTIG00000009196) #25	KLHL8 (ENSPTIG00000010495) #27	AFF1 (ENSPTIG00000011838) #28	ENSPTIG00000015329	C4orf36 (ENSPTIG00000015620) #32	SLC10A6 (ENSPTIG00000016093) #33	PTPN13 (ENSPTIG00000016360) #35	MAPK10 (ENSPTIG00000019645) #36	ARHGAP24 (ENSPTIG00000005664) #37	WDFY3 (ENSPTIG00000008434)	CDS1 (ENSPTIG00000018182)	ENSPTIG00000018677	GPAT3 (ENSPTIG00000018848)
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000158189 #9	ENSGT00730000111564 #10	ENSGT00390000015889.o.b #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00390000005534.b.b.c.b.a.a.b.a.a	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509.c #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000009819.a.b.a.a.a.a.a	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a
leopard	MODERN SPECIES	2	ENSPPRG00000023341	HERC3 (ENSPPRG00000022020) #9	PYURF (ENSPPRG00000018858) #11	PIGY (ENSPPRG00000020697)	HERC5 (ENSPPRG00000018278) #12	HERC6 (ENSPPRG00000014051) #13	ENSPPRG00000011197	PPM1K (ENSPPRG00000009659) #14	ENSPPRG00000008848 #15	PKD2 (ENSPPRG00000007565) #16	ENSPPRG00000006977 #17	MEPE (ENSPPRG00000004532) #18	IBSP (ENSPPRG00000003951) #19	DMP1 (ENSPPRG00000003749) #20	DSPP (ENSPPRG00000003345) #21	SPARCL1 (ENSPPRG00000002980) #22	NUDT9 (ENSPPRG00000001877) #23	HSD17B11 (ENSPPRG00000001352) #24	HSD17B13 (ENSPPRG00000000914) #25	KLHL8 (ENSPPRG00000022636) #27	AFF1 (ENSPPRG00000023590) #28	C4orf36 (ENSPPRG00000020551) #32	SLC10A6 (ENSPPRG00000018990) #33	PTPN13 (ENSPPRG00000017293) #35	MAPK10 (ENSPPRG00000004716) #36	ENSPPRG00000003351	ARHGAP24 (ENSPPRG00000003142) #37	WDFY3 (ENSPPRG00000022861)	CDS1 (ENSPPRG00000014316)	NKX6-1 (ENSPPRG00000013390)	GPAT3 (ENSPPRG00000013201)
lion	MODERN SPECIES	4	FAM13A (ENSPLOG00000005414) #8	HERC3 (ENSPLOG00000005770) #9	NAP1L5 (ENSPLOG00000005898) #10	PYURF (ENSPLOG00000005924) #11	HERC5 (ENSPLOG00000005967) #12	HERC6 (ENSPLOG00000006131) #13	ENSPLOG00000006336	PPM1K (ENSPLOG00000006359) #14	ENSPLOG00000006408 #15	PKD2 (ENSPLOG00000006456) #16	SPP1 (ENSPLOG00000006547) #17	MEPE (ENSPLOG00000006654) #18	IBSP (ENSPLOG00000006687) #19	DMP1 (ENSPLOG00000006728) #20	ENSPLOG00000006784 #21	SPARCL1 (ENSPLOG00000006828) #22	NUDT9 (ENSPLOG00000006898) #23	HSD17B11 (ENSPLOG00000006951) #24	HSD17B13 (ENSPLOG00000006994) #25	KLHL8 (ENSPLOG00000007059) #27	AFF1 (ENSPLOG00000007207) #28	ENSPLOG00000007406	C4orf36 (ENSPLOG00000007423) #32	SLC10A6 (ENSPLOG00000007456) #33	PTPN13 (ENSPLOG00000007651) #35	MAPK10 (ENSPLOG00000008731) #36	ARHGAP24 (ENSPLOG00000009317) #37	WDFY3 (ENSPLOG00000009473)	CDS1 (ENSPLOG00000009762)	NKX6-1 (ENSPLOG00000009814)	GPAT3 (ENSPLOG00000009847)
Cat	MODERN SPECIES	235	FAM13A (ENSFCAG00000015497) #8	HERC3 (ENSFCAG00000030844) #9	NAP1L5 (ENSFCAG00000022618) #10	ENSFCAG00000031593 #11	ENSFCAG00000023946	HERC5 (ENSFCAG00000006163) #12	HERC6 (ENSFCAG00000008727) #13	PPM1K (ENSFCAG00000039463) #14	ABCG2 (ENSFCAG00000002841) #15	PKD2 (ENSFCAG00000002839) #16	SPP1 (ENSFCAG00000044995) #17	MEPE (ENSFCAG00000009103) #18	IBSP (ENSFCAG00000036214) #19	DMP1 (ENSFCAG00000046729) #20	DSPP (ENSFCAG00000025835) #21	SPARCL1 (ENSFCAG00000013900) #22	NUDT9 (ENSFCAG00000003315) #23	HSD17B11 (ENSFCAG00000030181) #24	KLHL8 (ENSFCAG00000013928) #27	AFF1 (ENSFCAG00000029806) #28	C4orf36 (ENSFCAG00000036309) #32	SLC10A6 (ENSFCAG00000031386) #33	PTPN13 (ENSFCAG00000018332) #35	MAPK10 (ENSFCAG00000002234) #36	ARHGAP24 (ENSFCAG00000028582) #37	ENSFCAG00000022178	WDFY3 (ENSFCAG00000002946)	CDS1 (ENSFCAG00000028459)	NKX6-1 (ENSFCAG00000028918)	GPAT3 (ENSFCAG00000019375)	ENSFCAG00000049574
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.p #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.p #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.p #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b	ENSGT00390000003791
Greater horseshoe bat	MODERN SPECIES	23	ENSRFEG00010004474 #12	HERC6 (ENSRFEG00010004443) #13	ENSRFEG00010004429	ENSRFEG00010004423	PPM1K (ENSRFEG00010004404) #14	ENSRFEG00010004388	ENSRFEG00010004373 #15	ENSRFEG00010004347 #15	ENSRFEG00010004238 #15	PKD2 (ENSRFEG00010004160) #16	SPP1 (ENSRFEG00010004130) #17	MEPE (ENSRFEG00010004107) #18	IBSP (ENSRFEG00010004083) #19	DMP1 (ENSRFEG00010004052) #20	DSPP (ENSRFEG00010004032) #21	SPARCL1 (ENSRFEG00010004013) #22	NUDT9 (ENSRFEG00010003996) #23	HSD17B11 (ENSRFEG00010003976) #24	KLHL8 (ENSRFEG00010003941) #27	AFF1 (ENSRFEG00010003846) #28	C4orf36 (ENSRFEG00010003812) #32	SLC10A6 (ENSRFEG00010003798) #33	PTPN13 (ENSRFEG00010003712) #35	ENSRFEG00010003614	MAPK10 (ENSRFEG00010003450) #36	ENSRFEG00010003378	ARHGAP24 (ENSRFEG00010003345) #37	ENSRFEG00010003308	WDFY3 (ENSRFEG00010003045)	CDS1 (ENSRFEG00010002893)	NKX6-1 (ENSRFEG00010002866)
Microbat	MODERN SPECIES	949	ENSMLUG00000027952 #12	ENSMLUG00000026890	HERC6 (ENSMLUG00000012209) #13	PPM1K (ENSMLUG00000008111) #14	ENSMLUG00000029738	ENSMLUG00000016050 #15	ENSMLUG00000028298	ENSMLUG00000028011 #15	PKD2 (ENSMLUG00000010300) #16	SPP1 (ENSMLUG00000010286) #17	MEPE (ENSMLUG00000010133) #18	IBSP (ENSMLUG00000010116) #19	DMP1 (ENSMLUG00000005713) #20	ENSMLUG00000029911	DSPP (ENSMLUG00000022580) #21	SPARCL1 (ENSMLUG00000007646) #22	NUDT9 (ENSMLUG00000007624) #23	HSD17B11 (ENSMLUG00000007606) #24	KLHL8 (ENSMLUG00000016977) #27	AFF1 (ENSMLUG00000000293) #28	SLC10A6 (ENSMLUG00000002142) #33	PTPN13 (ENSMLUG00000002103) #35	MAPK10 (ENSMLUG00000014822) #36	ARHGAP24 (ENSMLUG00000014817) #37	WDFY3 (ENSMLUG00000011620)	CDS1 (ENSMLUG00000011596)	NKX6-1 (ENSMLUG00000012584)	ENSMLUG00000023867	GPAT3 (ENSMLUG00000017070)	ABRAXAS1 (ENSMLUG00000017061)	MRPS18C (ENSMLUG00000017057)
Megabat	MODERN SPECIES	1415																SPARCL1 (ENSPVAG00000009345) #22
Equus	ANCESTRAL SPECIES	12	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00730000111564 #10	ENSGT00940000158189 #9	ENSGT00390000015889.p #11	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Donkey	MODERN SPECIES	22	TIGD2 (ENSEASG00005025658)	FAM13A (ENSEASG00005012503) #8	NAP1L5 (ENSEASG00005012607) #10	HERC3 (ENSEASG00005012596) #9	PYURF (ENSEASG00005034657) #11	HERC5 (ENSEASG00005012643) #12	HERC6 (ENSEASG00005012691) #13	PPM1K (ENSEASG00005012713) #14	ENSEASG00005012717 #15	PKD2 (ENSEASG00005012725) #16	SPP1 (ENSEASG00005012730) #17	MEPE (ENSEASG00005012732) #18	IBSP (ENSEASG00005012734) #19	DMP1 (ENSEASG00005012738) #20	DSPP (ENSEASG00005012740) #21	SPARCL1 (ENSEASG00005012743) #22	NUDT9 (ENSEASG00005012745) #23	HSD17B11 (ENSEASG00005012747) #24	HSD17B13 (ENSEASG00005012750) #25	ENSEASG00005012752	KLHL8 (ENSEASG00005012755) #27	AFF1 (ENSEASG00005012760) #28	C4orf36 (ENSEASG00005038157) #32	SLC10A6 (ENSEASG00005029221) #33	PTPN13 (ENSEASG00005012776) #35	ENSEASG00005034628	MAPK10 (ENSEASG00005012811) #36	ARHGAP24 (ENSEASG00005013101) #37	WDFY3 (ENSEASG00005013124)	CDS1 (ENSEASG00005013203)	NKX6-1 (ENSEASG00005031030)
Horse	MODERN SPECIES	22	TIGD2 (ENSECAG00000018362)	FAM13A (ENSECAG00000019173) #8	ENSECAG00000052307	HERC3 (ENSECAG00000011129) #9	NAP1L5 (ENSECAG00000001741) #10	HERC5 (ENSECAG00000015395) #12	HERC6 (ENSECAG00000019411) #13	PPM1K (ENSECAG00000005000) #14	ABCG2 (ENSECAG00000009773) #15	PKD2 (ENSECAG00000024033) #16	SPP1 (ENSECAG00000017191) #17	MEPE (ENSECAG00000024351) #18	IBSP (ENSECAG00000024478) #19	DMP1 (ENSECAG00000004158) #20	DSPP (ENSECAG00000007608) #21	SPARCL1 (ENSECAG00000009280) #22	NUDT9 (ENSECAG00000019556) #23	HSD17B11 (ENSECAG00000008173) #24	ENSECAG00000049673	ENSECAG00000053823	HSD17B13 (ENSECAG00000012765) #25	KLHL8 (ENSECAG00000017829) #27	ENSECAG00000050121	AFF1 (ENSECAG00000003619) #28	C3H4orf36 (ENSECAG00000012119) #32	SLC10A6 (ENSECAG00000012685) #33	PTPN13 (ENSECAG00000015663) #35	MAPK10 (ENSECAG00000017280) #36	ARHGAP24 (ENSECAG00000012825) #37	ENSECAG00000033662 #37	ENSECAG00000046931
Atlantogenata	ANCESTRAL SPECIES	25	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Afrotheria	ANCESTRAL SPECIES	35	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b #7	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00730000111489 #21	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Afrotheria_a	ANCESTRAL SPECIES	35	ENSGT01030000234633.C.b	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b #7	ENSGT00940000162273	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00390000015549 #32	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a	ENSGT00530000063424.b
Elephant	MODERN SPECIES	302	ENSLAFG00000026731	GPRIN3 (ENSLAFG00000025610) #7	TIGD2 (ENSLAFG00000031840)	ENSLAFG00000006124 #8	HERC3 (ENSLAFG00000005544) #9	PYURF (ENSLAFG00000001207) #11	HERC5 (ENSLAFG00000011856) #12	HERC6 (ENSLAFG00000002305) #13	PPM1K (ENSLAFG00000013249) #14	ENSLAFG00000000187 #15	PKD2 (ENSLAFG00000003921) #16	SPP1 (ENSLAFG00000006514) #17	MEPE (ENSLAFG00000022668) #18	IBSP (ENSLAFG00000015238) #19	DMP1 (ENSLAFG00000004781) #20	SPARCL1 (ENSLAFG00000011395) #22	NUDT9 (ENSLAFG00000011391) #23	HSD17B11 (ENSLAFG00000026758) #24	HSD17B13 (ENSLAFG00000004869) #25	KLHL8 (ENSLAFG00000015896) #27	ENSLAFG00000025818	ENSLAFG00000015880 #28	ENSLAFG00000027149 #28	C4orf36 (ENSLAFG00000014505) #32	SLC10A6 (ENSLAFG00000014503) #33	PTPN13 (ENSLAFG00000014491) #35	MAPK10 (ENSLAFG00000012079) #36	ARHGAP24 (ENSLAFG00000012071) #37	WDFY3 (ENSLAFG00000013162)	CDS1 (ENSLAFG00000013159)	ENSLAFG00000030127
Tenrec	MODERN SPECIES	4611																SPARCL1 (ENSETEG00000004154) #22
Xenarthra	ANCESTRAL SPECIES	587												ENSGT00940000160729 #15	ENSGT00940000159025 #16	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27
Sloth	MODERN SPECIES	4238																SPARCL1 (ENSCHOG00000002544) #22
Armadillo	MODERN SPECIES	2098										ENSDNOG00000005656 #15	PKD2 (ENSDNOG00000005635) #16	MEPE (ENSDNOG00000036663) #18	IBSP (ENSDNOG00000041199) #19	ENSDNOG00000036664 #21	ENSDNOG00000032333	SPARCL1 (ENSDNOG00000014000) #22	NUDT9 (ENSDNOG00000049236) #23	HSD17B11 (ENSDNOG00000042281) #24	KLHL8 (ENSDNOG00000012256) #27
Platypus	MODERN SPECIES	3	SMIM43 (ENSOANG00000047440)	EXOSC9 (ENSOANG00000015114)	CCNA2 (ENSOANG00000044822)	BBS7 (ENSOANG00000015116)	TRPC3 (ENSOANG00000015117)	BLTP1 (ENSOANG00000015120)	ADAD1 (ENSOANG00000015125)	ENSOANG00000013637	BBS12 (ENSOANG00000013636)	FGF2 (ENSOANG00000048457)	ABCG2 (ENSOANG00000013633)	PKD2 (ENSOANG00000013631) #16	SPP1 (ENSOANG00000042157) #17	IBSP (ENSOANG00000043554) #19	ENSOANG00000013628 #20	ENSOANG00000015354 #22	NUDT9 (ENSOANG00000009493) #23	HSD17B11 (ENSOANG00000013627) #24	KLHL8 (ENSOANG00000013625) #27	AFF1 (ENSOANG00000013624) #28	ENSOANG00000029338 #32	PTPN13 (ENSOANG00000006229) #35	SLC10A6 (ENSOANG00000037189) #33	MAPK10 (ENSOANG00000006227) #36	ARHGAP24 (ENSOANG00000006226) #37	WDFY3 (ENSOANG00000006219)	CDS1 (ENSOANG00000006213)	NKX6-1 (ENSOANG00000049849)	ERGIC3 (ENSOANG00000044234)	GPAT3 (ENSOANG00000015003)	MSR1 (ENSOANG00000015004)
Sauria	ANCESTRAL SPECIES	6	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00940000160856 #24	ENSGT00390000017405 #23	ENSGT00940000161743 #25	ENSGT00390000014810.b	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00950000182808.a.a.a.a.b #33	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000163989.a.a	ENSGT00390000015889 #11	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00390000014810.b	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00610000087446	ENSGT00940000162703 #12	ENSGT00940000163989.a.a	ENSGT00390000015889 #11	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00390000014810.b	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a
Aves	ANCESTRAL SPECIES	51	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Neognathae	ANCESTRAL SPECIES	41	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Galloanserae	ANCESTRAL SPECIES	34	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000011365.b	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00940000173785	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856.h #24	ENSGT00940000160856.g #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Japanese quail	MODERN SPECIES	22	ENSCJPG00005009976	G3BP2 (ENSCJPG00005009977)	BMP2K (ENSCJPG00005009978)	PAQR3 (ENSCJPG00005009979)	ANTXR2 (ENSCJPG00005009983)	PRDM8 (ENSCJPG00005009988)	FGF5 (ENSCJPG00005009989)	BMP3 (ENSCJPG00005009992)	RASGEF1B (ENSCJPG00005009993)	PRKG2 (ENSCJPG00005009999)	PKD2 (ENSCJPG00005010000) #16	SPP1 (ENSCJPG00005010001) #17	ENSCJPG00005010004 #18	IBSP (ENSCJPG00005010005) #19	ENSCJPG00005010006	SPARCL1 (ENSCJPG00005010007) #22	NUDT9 (ENSCJPG00005010008) #23	ENSCJPG00005010009 #24	ENSCJPG00005010028 #24	KLHL8 (ENSCJPG00005010034) #27	AFF1 (ENSCJPG00005010035) #28	PTPN13 (ENSCJPG00005010036) #35	MAPK10 (ENSCJPG00005010037) #36	ARHGAP24 (ENSCJPG00005010039) #37	COPS4 (ENSCJPG00005010040)	LIN54 (ENSCJPG00005010041)	THAP9 (ENSCJPG00005010042)	SEC31A (ENSCJPG00005010043)	SCD5 (ENSCJPG00005010044)	TMEM150C (ENSCJPG00005010047)	ENOPH1 (ENSCJPG00005010048)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000011365.b	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000010702 #18	ENSGT00940000173410	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856.h #24	ENSGT00940000160856.g #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Chicken	MODERN SPECIES	33	AREG (ENSGALG00010003223)	USO1 (ENSGALG00010002441)	G3BP2 (ENSGALG00010002459)	BMP2K (ENSGALG00010003165)	PAQR3 (ENSGALG00010003171)	ANTXR2 (ENSGALG00010003189)	PRDM8 (ENSGALG00010002796)	FGF5 (ENSGALG00010002801)	BMP3 (ENSGALG00010002819)	RASGEF1B (ENSGALG00010002880)	PRKG2 (ENSGALG00010003198)	PKD2 (ENSGALG00010003204) #16	SPP1 (ENSGALG00010003220) #17	MEPE (ENSGALG00010002469) #18	IBSP (ENSGALG00010002428) #20	SPARCL1 (ENSGALG00010003771) #22	NUDT9 (ENSGALG00010003788) #23	ENSGALG00010004976 #24	ENSGALG00010003797 #24	KLHL8 (ENSGALG00010003816) #27	ENSGALG00010004505 #28	PTPN13 (ENSGALG00010003823) #35	MAPK10 (ENSGALG00010003834) #36	ARHGAP24 (ENSGALG00010003878) #37	COPS4 (ENSGALG00010003894)	LIN54 (ENSGALG00010003899)	THAP9 (ENSGALG00010003910)	SEC31A (ENSGALG00010003925)	SCD5 (ENSGALG00010003948)	TMEM150C (ENSGALG00010003981)	ENOPH1 (ENSGALG00010003988)
Turkey	MODERN SPECIES	24	SCD5 (ENSMGAG00000008016)	ENSMGAG00000022538	ENSMGAG00000007943	ENSMGAG00000007913	ENSMGAG00000016550	COPS4 (ENSMGAG00000007890)	ENSMGAG00000007859 #37	ENSMGAG00000007800 #36	ENSMGAG00000017609 #35	ENSMGAG00000007675 #35	ENSMGAG00000022999 #24	ENSMGAG00000007557 #24	ENSMGAG00000007610 #27	AFF1 (ENSMGAG00000007646) #28	ENSMGAG00000022067	ENSMGAG00000007541 #22	ENSMGAG00000007547 #23	ENSMGAG00000022528	ENSMGAG00000019649 #20	ENSMGAG00000007496 #17	ENSMGAG00000007518	ENSMGAG00000007522 #19	PKD2 (ENSMGAG00000007470) #16	ENSMGAG00000007424	ENSMGAG00000007408	ENSMGAG00000007405	ENSMGAG00000007399	ENSMGAG00000018376	ENSMGAG00000007307	ENSMGAG00000007258	ENSMGAG00000007285
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000157548	ENSGT00940000155291	ENSGT00940000156320	ENSGT00890000139463.b.b.b	ENSGT00940000158449	ENSGT00390000016547	ENSGT00940000159775	ENSGT00940000155816.b	ENSGT00940000159393	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT00390000003175.a.b	ENSGT00940000162090.a	ENSGT01030000234578.A.a	ENSGT00940000154426	ENSGT00440000039914
Pink-footed goose	MODERN SPECIES	133	BMP2K (ENSABRG00000007090)	PAQR3 (ENSABRG00000007085)	ANTXR2 (ENSABRG00000007073)	PRDM8 (ENSABRG00000007068)	FGF5 (ENSABRG00000007009)	CFAP299 (ENSABRG00000006980)	BMP3 (ENSABRG00000006973)	RASGEF1B (ENSABRG00000006928)	PRKG2 (ENSABRG00000006902)	ABCG2 (ENSABRG00000006889)	PKD2 (ENSABRG00000006874) #16	SPP1 (ENSABRG00000006867) #17	ENSABRG00000006864	IBSP (ENSABRG00000006858) #19	ENSABRG00000006846 #20	SPARCL1 (ENSABRG00000006836) #22	NUDT9 (ENSABRG00000006827) #23
Duck	MODERN SPECIES	22	EREG (ENSAPLG00000012982)	AREG (ENSAPLG00000017459)	USO1 (ENSAPLG00000013128)	ENSAPLG00000023742	G3BP2 (ENSAPLG00000013777)	BMP2K (ENSAPLG00000014134)	PAQR3 (ENSAPLG00000018923)	ANTXR2 (ENSAPLG00000014640)	CFAP299 (ENSAPLG00000015021)	BMP3 (ENSAPLG00000015075)	RASGEF1B (ENSAPLG00000015111)	PRKG2 (ENSAPLG00000015473)	PKD2 (ENSAPLG00000002737) #16	ENSAPLG00000003038	ENSAPLG00000028651 #20	SPARCL1 (ENSAPLG00000003209) #22	ENSAPLG00000021509	ENSAPLG00000029063 #24	ENSAPLG00000029297 #24	KLHL8 (ENSAPLG00000003622) #27	AFF1 (ENSAPLG00000004059) #28	ENSAPLG00000020567 #35	ENSAPLG00000028936 #35	MAPK10 (ENSAPLG00000005856) #36	ARHGAP24 (ENSAPLG00000006223) #37	COPS4 (ENSAPLG00000009737)	ENSAPLG00000029432	LIN54 (ENSAPLG00000009904)	ENSAPLG00000027320	SEC31A (ENSAPLG00000010192)	HNRNPDL (ENSAPLG00000011774)
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT01030000235152.b	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000153510.b	ENSGT00940000155881	ENSGT01030000235152.b	ENSGT00940000161474.b.a	ENSGT00390000003175.a.b	ENSGT00940000162090	ENSGT01030000234578.A.a	ENSGT00440000039914
Golden eagle	MODERN SPECIES		CDS1 (ENSACCG00020001800)	ENSACCG00020001530	ENSACCG00020001498	ABRAXAS1 (ENSACCG00020001477)	ENSACCG00020001460	HELQ (ENSACCG00020001377)	HPSE (ENSACCG00020001279)	COQ2 (ENSACCG00020001262)	PLAC8 (ENSACCG00020001242)	MKS1 (ENSACCG00020001222)	ABCG2 (ENSACCG00020001203)	PKD2 (ENSACCG00020001186) #16	SPP1 (ENSACCG00020001167) #17	IBSP (ENSACCG00020001159) #19	ENSACCG00020001144	SPARCL1 (ENSACCG00020001124) #22	NUDT9 (ENSACCG00020001102) #23	HSD17B11 (ENSACCG00020001036) #24	KLHL8 (ENSACCG00020000913) #27	AFF1 (ENSACCG00020000855) #28	PTPN13 (ENSACCG00020000760) #35	MAPK10 (ENSACCG00020000508) #36	ARHGAP24 (ENSACCG00020000481) #37	COPS4 (ENSACCG00020000442)	LIN54 (ENSACCG00020000408)	THAP9 (ENSACCG00020000344)	SEC31A (ENSACCG00020000311)	SCD5 (ENSACCG00020000289)	TMEM150C (ENSACCG00020000287)	ENOPH1 (ENSACCG00020000285)	HNRNPDL (ENSACCG00020000282)
Kakapo	MODERN SPECIES	24	ENSSHBG00005011685	ENSSHBG00005011661	ABRAXAS1 (ENSSHBG00005011622)	ENSSHBG00005011599	HELQ (ENSSHBG00005011559)	HPSE (ENSSHBG00005011497)	COQ2 (ENSSHBG00005011445)	PLAC8 (ENSSHBG00005011413)	ENSSHBG00005011399	ABCG2 (ENSSHBG00005011359)	PKD2 (ENSSHBG00005010402) #16	SPP1 (ENSSHBG00005000720) #17	ENSSHBG00005000710	IBSP (ENSSHBG00005000684) #19	DMP1 (ENSSHBG00005015505) #20	SPARCL1 (ENSSHBG00005015499) #22	NUDT9 (ENSSHBG00005015494) #23	ENSSHBG00005015489 #24	ENSSHBG00005015484 #24	KLHL8 (ENSSHBG00005015480) #27	AFF1 (ENSSHBG00005015467) #28	PTPN13 (ENSSHBG00005015414) #35	MAPK10 (ENSSHBG00005015385) #36	ARHGAP24 (ENSSHBG00005015377) #37	COPS4 (ENSSHBG00005015370)	LIN54 (ENSSHBG00005015363)	ENSSHBG00005015348	THAP9 (ENSSHBG00005015342)	SEC31A (ENSSHBG00005015303)	SCD5 (ENSSHBG00005015283)	TMEM150C (ENSSHBG00005015275)
Passeriformes	ANCESTRAL SPECIES	4	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000010702 #18	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00940000156733	ENSGT00940000156801	ENSGT00940000158403	ENSGT00940000157587	ENSGT00390000016264	ENSGT00390000017043	ENSGT00940000156171	ENSGT00940000157878	ENSGT00940000156589	ENSGT00940000161998	ENSGT00950000182915.a.a.b	ENSGT00390000008828
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000002485 #19	ENSGT00940000173785	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27	ENSGT00940000156733	ENSGT00940000156801	ENSGT00940000158403	ENSGT00940000157587.i	ENSGT00390000016264	ENSGT00390000017043	ENSGT00940000156171.b	ENSGT00940000157878	ENSGT00940000156589	ENSGT00940000161998	ENSGT00950000182915.a.a.b	ENSGT00390000008828
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000157329.u.a	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000002485 #19	ENSGT00940000173785	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350	ENSGT00390000004874.a.b	ENSGT00940000153771.B	ENSGT00940000157329.u.b	ENSGT00940000162658.a.b.a	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00940000173410	ENSGT00390000002485 #19	ENSGT00940000173785	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00940000157583 #27
Zebra finch	MODERN SPECIES	25	NKX6-1 (ENSTGUG00000002130)	ENSTGUG00000002133	ABRAXAS1 (ENSTGUG00000002146)	ENSTGUG00000024201	ENSTGUG00000028005	HELQ (ENSTGUG00000002154)	HPSE (ENSTGUG00000002169)	COQ2 (ENSTGUG00000002188)	PLAC8 (ENSTGUG00000002199)	ABCG2 (ENSTGUG00000002200)	PKD2 (ENSTGUG00000002213) #16	SPP1 (ENSTGUG00000002233) #17	ENSTGUG00000023586	IBSP (ENSTGUG00000002236) #19	ENSTGUG00000022654	SPARCL1 (ENSTGUG00000002242) #22	NUDT9 (ENSTGUG00000002249) #23	HSD17B11 (ENSTGUG00000002260) #24	KLHL8 (ENSTGUG00000002275) #27	ENSTGUG00000002283	MAML3 (ENSTGUG00000002284)	SCOC (ENSTGUG00000026865)	ENSTGUG00000002287	ELMOD2 (ENSTGUG00000028132)	TBC1D9 (ENSTGUG00000002325)	RNF150 (ENSTGUG00000029099)	ZNF330 (ENSTGUG00000002360)	ENSTGUG00000002368	ENSTGUG00000025612	INPP4B (ENSTGUG00000021408)	USP38 (ENSTGUG00000002389)
Common canary	MODERN SPECIES	2	ENSSCAG00000015336	ENSSCAG00000015341	ABRAXAS1 (ENSSCAG00000015343)	ENSSCAG00000015345	HELQ (ENSSCAG00000015353)	HPSE (ENSSCAG00000015375)	COQ2 (ENSSCAG00000015382)	PLAC8 (ENSSCAG00000015390)	ABCG2 (ENSSCAG00000015393)	PKD2 (ENSSCAG00000015406) #16	ENSSCAG00000015440 #17	ENSSCAG00000015441	ENSSCAG00000015443	IBSP (ENSSCAG00000015445) #19	ENSSCAG00000000014	ENSSCAG00000000016 #22	NUDT9 (ENSSCAG00000000018) #23	HSD17B11 (ENSSCAG00000000023) #24	ENSSCAG00000000061	ENSSCAG00000000343	ENSSCAG00000000347	KLHL8 (ENSSCAG00000000353) #27	ENSSCAG00000000364
Medium ground finch	MODERN SPECIES	7	CDS1 (ENSGFOG00000006846)	ENSGFOG00000006833	ENSGFOG00000006825	ABRAXAS1 (ENSGFOG00000006816)	ENSGFOG00000006813	HELQ (ENSGFOG00000006634)	HPSE (ENSGFOG00000006616)	COQ2 (ENSGFOG00000006608)	PLAC8 (ENSGFOG00000006599)	ENSGFOG00000006591	ABCG2 (ENSGFOG00000006578)	PKD2 (ENSGFOG00000005660) #16	SPP1 (ENSGFOG00000005629) #17	IBSP (ENSGFOG00000005618) #19	ENSGFOG00000005607	SPARCL1 (ENSGFOG00000005588) #22	NUDT9 (ENSGFOG00000005581) #23	ENSGFOG00000005576	HSD17B11 (ENSGFOG00000005567) #24	KLHL8 (ENSGFOG00000005557) #27	BMP3 (ENSGFOG00000005554)	FGF5 (ENSGFOG00000005491)	ANTXR2 (ENSGFOG00000005469)	ENSGFOG00000005463	PAQR3 (ENSGFOG00000005443)	BMP2K (ENSGFOG00000005407)
Flycatcher	MODERN SPECIES	22	HPSE (ENSFALG00000005222)	COQ2 (ENSFALG00000028054)	PLAC8 (ENSFALG00000005191)	ENSFALG00000023494	ENSFALG00000026639	ABCG2 (ENSFALG00000005172)	ENSFALG00000023090	ENSFALG00000025706	PKD2 (ENSFALG00000005139) #16	SPP1 (ENSFALG00000005111) #17	ENSFALG00000027951	ENSFALG00000026766	ENSFALG00000025272	IBSP (ENSFALG00000005087) #19	ENSFALG00000027885	SPARCL1 (ENSFALG00000005055) #22	NUDT9 (ENSFALG00000024339) #23	HSD17B11 (ENSFALG00000005021) #24	KLHL8 (ENSFALG00000005003) #27	SMARCA5 (ENSFALG00000004987)	GAB1 (ENSFALG00000004978)	USP38 (ENSFALG00000004974)	INPP4B (ENSFALG00000004964)	IL15 (ENSFALG00000027447)	ZNF330 (ENSFALG00000022973)	ENSFALG00000027544	ENSFALG00000004942	TBC1D9 (ENSFALG00000004931)	ELMOD2 (ENSFALG00000004921)	MGAT4D (ENSFALG00000004911)	CLGN (ENSFALG00000004907)
Great tit	MODERN SPECIES	23	ENSPMJG00000008386	ABRAXAS1 (ENSPMJG00000008385)	ENSPMJG00000008384	HELQ (ENSPMJG00000008381)	HPSE (ENSPMJG00000008379)	COQ2 (ENSPMJG00000008378)	PLAC8 (ENSPMJG00000008376)	ENSPMJG00000008375	ABCG2 (ENSPMJG00000008371)	PKD2 (ENSPMJG00000008367) #16	SPP1 (ENSPMJG00000008342) #17	ENSPMJG00000008338	ENSPMJG00000008336 #18	IBSP (ENSPMJG00000008335) #19	DMP1 (ENSPMJG00000008332) #20	SPARCL1 (ENSPMJG00000008329) #22	NUDT9 (ENSPMJG00000008327) #23	ENSPMJG00000008325 #24	ENSPMJG00000008324 #24	KLHL8 (ENSPMJG00000008322) #27	SMARCA5 (ENSPMJG00000008316)	GAB1 (ENSPMJG00000008314)	USP38 (ENSPMJG00000008289)	INPP4B (ENSPMJG00000008257)	IL15 (ENSPMJG00000008228)	ZNF330 (ENSPMJG00000008227)	ENSPMJG00000008225	RNF150 (ENSPMJG00000008224)	TBC1D9 (ENSPMJG00000008167)	ELMOD2 (ENSPMJG00000008165)	MGAT4D (ENSPMJG00000008164)
African ostrich	MODERN SPECIES	662												ABCG2 (ENSSCUG00000007033)	PKD2 (ENSSCUG00000007052) #16	ENSSCUG00000007059 #17	DMP1 (ENSSCUG00000007060) #20	SPARCL1 (ENSSCUG00000007063) #22	NUDT9 (ENSSCUG00000007070) #23	HSD17B11 (ENSSCUG00000007073) #24	KLHL8 (ENSSCUG00000007076) #27	AFF1 (ENSSCUG00000007080) #28	ENSSCUG00000007087	PTPN13 (ENSSCUG00000007090) #35	MAPK10 (ENSSCUG00000007107) #36	ARHGAP24 (ENSSCUG00000007112) #37	COPS4 (ENSSCUG00000007121)	LIN54 (ENSSCUG00000007125)	THAP9 (ENSSCUG00000007127)	SEC31A (ENSSCUG00000007129)	SCD5 (ENSSCUG00000007138)	TMEM150C (ENSSCUG00000007139)	ENOPH1 (ENSSCUG00000007140)
Australian saltwater crocodile	MODERN SPECIES	65	SNCA (ENSCPRG00005013003)	GPRIN3 (ENSCPRG00005013008) #7	ENSCPRG00005013013 #8	ENSCPRG00005013018 #8	HERC3 (ENSCPRG00005013035) #9	ENSCPRG00005013063	PYURF (ENSCPRG00005013066) #11	HERC6 (ENSCPRG00005013075) #13	PPM1K (ENSCPRG00005013096) #14	ENSCPRG00005013100	ENSCPRG00005013114	PKD2 (ENSCPRG00005013148) #16	SPP1 (ENSCPRG00005013275) #17	IBSP (ENSCPRG00005013280) #19	DMP1 (ENSCPRG00005013287) #20	SPARCL1 (ENSCPRG00005013294) #22	NUDT9 (ENSCPRG00005013342) #23	HSD17B11 (ENSCPRG00005013349) #24	ENSCPRG00005013353	KLHL8 (ENSCPRG00005013360) #27	AFF1 (ENSCPRG00005013372) #28	PTPN13 (ENSCPRG00005013391) #35	MAPK10 (ENSCPRG00005013428) #36	ARHGAP24 (ENSCPRG00005013430) #37	ENSCPRG00005013431	ENSCPRG00005013439	ENSCPRG00005013441	LIN54 (ENSCPRG00005013448)	THAP9 (ENSCPRG00005013454)	SEC31A (ENSCPRG00005013624)	SCD5 (ENSCPRG00005014907)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00570000079168.b.b.b #7	ENSGT00950000183033.a.a.c.b ##8	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00390000015889 #11	ENSGT00610000087446	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00390000002485 #19	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00390000014810.b	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b
Testudinoidea	ANCESTRAL SPECIES	34	ENSGT00950000183033.a.a.c.b ##8	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00940000165755	ENSGT00390000015889.a #11	ENSGT00940000163989.a.a	ENSGT00390000015889.b #11	ENSGT00610000087446	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350
Emydidae	ANCESTRAL SPECIES	27	ENSGT00950000183175.B.b	ENSGT00570000079168.b.b.b #7	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00390000015889.a #11	ENSGT00940000163989.a.a	ENSGT00390000015889.b #11	ENSGT00610000087446	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000160856 #24	ENSGT00390000014810.b	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965
Three-toed box turtle	MODERN SPECIES	377	SNCA (ENSTMTG00000007335)	GPRIN3 (ENSTMTG00000007402) #7	ENSTMTG00000007424 #8	ENSTMTG00000007435 #8	HERC3 (ENSTMTG00000007487) #9	ENSTMTG00000007790 #11	ENSTMTG00000007800 #13	ENSTMTG00000007829 #13	PPM1K (ENSTMTG00000007860) #14	ENSTMTG00000007889	ENSTMTG00000008085	PKD2 (ENSTMTG00000008154) #16	ENSTMTG00000008471	ENSTMTG00000008479	ENSTMTG00000008510 #20	SPARCL1 (ENSTMTG00000003385) #22	NUDT9 (ENSTMTG00000003447) #23	HSD17B11 (ENSTMTG00000003476) #24	ENSTMTG00000003528	KLHL8 (ENSTMTG00000003551) #27	AFF1 (ENSTMTG00000003589) #28	PTPN13 (ENSTMTG00000004005) #35	MAPK10 (ENSTMTG00000008092) #36	ARHGAP24 (ENSTMTG00000011532) #37	WDFY3 (ENSTMTG00000011583)	CDS1 (ENSTMTG00000011826)	ENSTMTG00000011867	GPAT3 (ENSTMTG00000011880)	ABRAXAS1 (ENSTMTG00000011906)	ENSTMTG00000011934	HELQ (ENSTMTG00000011954)
painted turtle	MODERN SPECIES	2431	GPRIN3 (ENSCPBG00000004935) #7	ENSCPBG00000004943 #8	ENSCPBG00000004984 #8	HERC3 (ENSCPBG00000005002) #9	ENSCPBG00000005019	PYURF (ENSCPBG00000005028) #11	PIGY (ENSCPBG00000005034)	HERC6 (ENSCPBG00000005044) #13	ENSCPBG00000005087	PPM1K (ENSCPBG00000005094) #14	ENSCPBG00000005107	ENSCPBG00000005114	PKD2 (ENSCPBG00000005129) #16	SPP1 (ENSCPBG00000005175) #17	ENSCPBG00000005183 #20	SPARCL1 (ENSCPBG00000005198) #22	NUDT9 (ENSCPBG00000005216) #23	HSD17B11 (ENSCPBG00000005232) #24	ENSCPBG00000005364	KLHL8 (ENSCPBG00000005370) #27	AFF1 (ENSCPBG00000005382) #28	ENSCPBG00000005400	PTPN13 (ENSCPBG00000005412) #35	MAPK10 (ENSCPBG00000005448) #36	ARHGAP24 (ENSCPBG00000005490) #37	ENSCPBG00000005522	WDFY3 (ENSCPBG00000005618)	ENSCPBG00000005949	NKX6-1 (ENSCPBG00000007754)	GPAT3 (ENSCPBG00000007766)	ABRAXAS1 (ENSCPBG00000007774)
Testudinidae	ANCESTRAL SPECIES	39	ENSGT00950000183033.a.a.c.b ##8	ENSGT00950000183033.a.b.a #8	ENSGT00940000158189 #9	ENSGT00390000015889.b #11	ENSGT00610000087446	ENSGT00940000165755	ENSGT00390000015889.a #11	ENSGT00940000162279 #13	ENSGT00940000156633 #14	ENSGT00940000162658.a.b.a	ENSGT00940000162658.a.b.b	ENSGT00940000159025 #16	ENSGT00390000002509 #17	ENSGT01000000220672	ENSGT00730000111375 #20	ENSGT00510000046787.e.a #22	ENSGT00390000017405 #23	ENSGT00940000161743 #25	ENSGT00940000157583 #27	ENSGT00950000182974.a.b #28	ENSGT00960000189615	ENSGT00940000155133.b #35	ENSGT00940000153692.A #36	ENSGT00950000183015.D #37	ENSGT00940000155680.d	ENSGT00940000158223.m	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT00530000063424.b	ENSGT00940000165965	ENSGT00940000157350
Abingdon island giant tortoise	MODERN SPECIES	2140									ENSCABG00000003458 #13	ENSCABG00000003465	PPM1K (ENSCABG00000003469) #14	ENSCABG00000003470	ENSCABG00000003473	PKD2 (ENSCABG00000003483) #16	ENSCABG00000003652 #17	SPARCL1 (ENSCABG00000003668) #22	NUDT9 (ENSCABG00000003753) #23	HSD17B13 (ENSCABG00000003755) #25	KLHL8 (ENSCABG00000003756) #27	AFF1 (ENSCABG00000003762) #28	ENSCABG00000003789	ENSCABG00000003796	ENSCABG00000003798 #35	ENSCABG00000003802 #35	MAPK10 (ENSCABG00000003904) #36	ARHGAP24 (ENSCABG00000005865) #37
Goode s thornscrub tortoise	MODERN SPECIES	19	MMRN1 (ENSGEVG00005010519)	SNCA (ENSGEVG00005010556)	GPRIN3 (ENSGEVG00005010604) #7	ENSGEVG00005010636 ##8	FAM13A (ENSGEVG00005010679) #8	HERC3 (ENSGEVG00005010789) #9	ENSGEVG00005010915	PYURF (ENSGEVG00005010978) #11	HERC6 (ENSGEVG00005011042) #13	PPM1K (ENSGEVG00005011360) #14	ENSGEVG00005011425	ENSGEVG00005011501	PKD2 (ENSGEVG00005000452) #16	ENSGEVG00005000695	DMP1 (ENSGEVG00005000699) #20	SPARCL1 (ENSGEVG00005000722) #22	NUDT9 (ENSGEVG00005000747) #23	HSD17B11 (ENSGEVG00005000766) #24	ENSGEVG00005000782	KLHL8 (ENSGEVG00005000828) #27	AFF1 (ENSGEVG00005000895) #28	ENSGEVG00005000968	ENSGEVG00005000978	PTPN13 (ENSGEVG00005001136) #35	MAPK10 (ENSGEVG00005001905) #36	ARHGAP24 (ENSGEVG00005002926) #37	WDFY3 (ENSGEVG00005003027)	ENSGEVG00005003099	CDS1 (ENSGEVG00005003115)	ENSGEVG00005003134	GPAT3 (ENSGEVG00005003150)
Anura	ANCESTRAL SPECIES																	ENSGT00510000046787.e.a #22
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000008945	ENSLLEG00000008968	ENSLLEG00000009002	ENSLLEG00000009203	ENSLLEG00000009217	PPM1K (ENSLLEG00000009273) #14	ENSLLEG00000009637	ABCG2 (ENSLLEG00000009698)	ENSLLEG00000010218	PKD2 (ENSLLEG00000010255) #16	ENSLLEG00000010370	ENSLLEG00000010390	ENSLLEG00000010408	ENSLLEG00000010470	ENSLLEG00000010504	ENSLLEG00000010545 #22	ENSLLEG00000010669	ENSLLEG00000010909	ENSLLEG00000011251	ENSLLEG00000011438	USO1 (ENSLLEG00000011584)	ENSLLEG00000012313	ENSLLEG00000012342	G3BP2 (ENSLLEG00000012387)	ENSLLEG00000012572	CDKL2 (ENSLLEG00000012670)	ENSLLEG00000013161	ENSLLEG00000013169	PARM1 (ENSLLEG00000013179)	ENSLLEG00000013204	BTC (ENSLLEG00000013228)