Rodentia	ANCESTRAL SPECIES		ENSGT00940000162684	ENSGT00940000162370	ENSGT00940000156840.b ##8	ENSGT00940000164799	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000163522.A	ENSGT00940000156840.b ##8	ENSGT00940000162297	ENSGT00940000156840.a.b #8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000154265	ENSGT00940000162684	ENSGT00940000163522.A.h	ENSGT00940000162297	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000163522.A.h	ENSGT00940000163522.B	ENSGT00940000156840.a.b #8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.g.a #16	ENSGT00940000157555.h ##18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000156840.b.x ##8	ENSGT00940000163522.A.g.a	ENSGT00940000156840.b.w ##8	ENSGT00940000156840.a.b #8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.h ##18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000156840.b.w ##8	ENSGT00940000156840.b.x ##8	ENSGT00940000156840.a.b #8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.g.a #16	ENSGT00940000157555.g.b #18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892.j #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000156840.b.w ##8	ENSGT00940000156840.b.x ##8	ENSGT00940000156840.a.b #8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.g.a #16	ENSGT00940000157555.g.b #18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892.j #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000028796 #7	ENSPEMG00000031096 #8	Kyat3 (ENSPEMG00000020874) #9	Gtf2b (ENSPEMG00000024196) #10	Pkn2 (ENSPEMG00000020406) #11	Lmo4 (ENSPEMG00000020893) #12	Hs2st1 (ENSPEMG00000020842) #13	Selenof (ENSPEMG00000020473) #14	Sh3glb1 (ENSPEMG00000030955) #15	ENSPEMG00000022101 #16	ENSPEMG00000022445 #17	ENSPEMG00000021736 #18	ENSPEMG00000007919 #19	Clca1 (ENSPEMG00000023001) #20	Clca2 (ENSPEMG00000021862) #21	Odf2l (ENSPEMG00000022035) #22	Col24a1 (ENSPEMG00000010634) #23	Znhit6 (ENSPEMG00000022716) #24	Ccn1 (ENSPEMG00000000386) #25	ENSPEMG00000031409 #26	Ddah1 (ENSPEMG00000027558) #27	Bcl10 (ENSPEMG00000026389) #28	ENSPEMG00000028265 #29	Syde2 (ENSPEMG00000022180) #30	Dnai3 (ENSPEMG00000023437) #31	Mcoln3 (ENSPEMG00000014566) #32	Mcoln2 (ENSPEMG00000015343) #33	Lpar3 (ENSPEMG00000022406) #34	Ssx2ip (ENSPEMG00000023032) #35	Ctbs (ENSPEMG00000006184) #36	Spata1 (ENSPEMG00000023282) #37
Prairie vole	MODERN SPECIES	8	ENSMOCG00000018710	ENSMOCG00000005605	Kyat3 (ENSMOCG00000022796) #9	ENSMOCG00000013457 #10	Pkn2 (ENSMOCG00000002664) #11	Lmo4 (ENSMOCG00000012271) #12	Hs2st1 (ENSMOCG00000021551) #13	Selenof (ENSMOCG00000002490) #14	Sh3glb1 (ENSMOCG00000013092) #15	ENSMOCG00000000717 #16	ENSMOCG00000005395 #18	ENSMOCG00000016514 #19	ENSMOCG00000009777	Clca1 (ENSMOCG00000015412) #20	Clca2 (ENSMOCG00000021161) #21	Odf2l (ENSMOCG00000013411) #22	Col24a1 (ENSMOCG00000010555) #23	Znhit6 (ENSMOCG00000011010) #24	Ccn1 (ENSMOCG00000013502) #25	ENSMOCG00000009612 #26	Ddah1 (ENSMOCG00000018589) #27	Bcl10 (ENSMOCG00000004469) #28	2410004B18Rik (ENSMOCG00000000971) #29	Syde2 (ENSMOCG00000011613) #30	Dnai3 (ENSMOCG00000004827) #31	Mcoln3 (ENSMOCG00000011948) #32	Mcoln2 (ENSMOCG00000005258) #33	Lpar3 (ENSMOCG00000012201) #34	Ssx2ip (ENSMOCG00000014448) #35	Ctbs (ENSMOCG00000020087) #36	ENSMOCG00000022893 #37
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000162297.l	ENSGT00940000162297.k	ENSGT00940000163522.A.g.a	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.g.a #16	ENSGT00940000157555.g.b #18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892.j #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Chinese hamster chok1gshd	MODERN SPECIES	219				Gtf2b (ENSCGRG00001022382) #10	Pkn2 (ENSCGRG00001016380) #11	Lmo4 (ENSCGRG00001023324) #12	ENSCGRG00001007720	Hs2st1 (ENSCGRG00001010979) #13	Selenof (ENSCGRG00001004806) #14	Sh3glb1 (ENSCGRG00001002284) #15	ENSCGRG00001022589 #16	ENSCGRG00001018022 #18	ENSCGRG00001017040 #19	Clca1 (ENSCGRG00001016411) #20	Clca2 (ENSCGRG00001014297) #21	Odf2l (ENSCGRG00001012670) #22	Col24a1 (ENSCGRG00001021909) #23	Znhit6 (ENSCGRG00001018263) #24	Ccn1 (ENSCGRG00001017662) #25	ENSCGRG00001016514 #26	Ddah1 (ENSCGRG00001019335) #27	Bcl10 (ENSCGRG00001018169) #28	2410004B18Rik (ENSCGRG00001015888) #29	Syde2 (ENSCGRG00001014086) #30	ENSCGRG00001011030 #31	Mcoln3 (ENSCGRG00001004877) #32	Mcoln2 (ENSCGRG00001001707) #33	Lpar3 (ENSCGRG00001024413) #34	Ssx2ip (ENSCGRG00001019268) #35	Ctbs (ENSCGRG00001014407) #36	Spata1 (ENSCGRG00001008771) #37
Golden Hamster	MODERN SPECIES	735	Gbp2 (ENSMAUG00000014482)	ENSMAUG00000001511	Kyat3 (ENSMAUG00000020779) #9	Gtf2b (ENSMAUG00000013321) #10	ENSMAUG00000009813 #11	ENSMAUG00000016021 #11	Lmo4 (ENSMAUG00000012795) #12	Hs2st1 (ENSMAUG00000009309) #13	Selenof (ENSMAUG00000002011) #14	ENSMAUG00000008381 #15	ENSMAUG00000018947 #16	ENSMAUG00000017339 #18	ENSMAUG00000014124 #19	Clca1 (ENSMAUG00000020334) #20	Clca2 (ENSMAUG00000020634) #21	Odf2l (ENSMAUG00000001252) #22	Col24a1 (ENSMAUG00000010161) #23	ENSMAUG00000020898 #24	Ccn1 (ENSMAUG00000006075) #25	ENSMAUG00000017168 #26	Ddah1 (ENSMAUG00000012623) #27	ENSMAUG00000011334 #28	2410004B18Rik (ENSMAUG00000019352) #29	Syde2 (ENSMAUG00000017505) #30	Dnai3 (ENSMAUG00000005774) #31	Mcoln3 (ENSMAUG00000018992) #32	Mcoln2 (ENSMAUG00000006761) #33	Ssx2ip (ENSMAUG00000013155) #35	ENSMAUG00000008498	Spata1 (ENSMAUG00000008313) #37	ENSMAUG00000019525
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000163522.A.g.a	ENSGT00940000156840.b.w ##8	ENSGT00940000156840.a.b #8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.h.a ##18	ENSGT00940000157555.h.b ##18	ENSGT00940000160416 #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Mus	ANCESTRAL SPECIES	7	ENSGT00940000163522.B	ENSGT00940000162297.l	ENSGT00940000162297.k	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.h.a ##18	ENSGT00940000157555.h.b ##18	ENSGT00940000160416.m #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000163522.B	ENSGT00940000162297.l	ENSGT00940000162297.k	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.h.a ##18	ENSGT00940000157555.h.b ##18	ENSGT00940000160416.m #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000162297.l	ENSGT00940000162297.k	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.h.a.a ##18	ENSGT00940000157555.h.b ##18	ENSGT00940000160416.n #19	ENSGT00940000160416.m #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Mouse	MODERN SPECIES	12	Gbp2 (ENSMUSG00000028270)	Kyat3 (ENSMUSG00000040213) #9	Gtf2b (ENSMUSG00000028271) #10	Pkn2 (ENSMUSG00000004591) #11	Lmo4 (ENSMUSG00000028266) #12	Hs2st1 (ENSMUSG00000040151) #13	Selenof (ENSMUSG00000037072) #14	Sh3glb1 (ENSMUSG00000037062) #15	Clca3a1 (ENSMUSG00000056025) ##18	Clca3a2 (ENSMUSG00000028262) ##18	Clca3b (ENSMUSG00000037033) ##18	Clca4b (ENSMUSG00000074195) #19	Clca4a (ENSMUSG00000068547) #19	Clca1 (ENSMUSG00000028255) #20	Clca2 (ENSMUSG00000036960) #21	Odf2l (ENSMUSG00000028256) #22	Col24a1 (ENSMUSG00000028197) #23	Znhit6 (ENSMUSG00000074182) #24	Ccn1 (ENSMUSG00000028195) #25	Ddah1 (ENSMUSG00000028194) #27	Bcl10 (ENSMUSG00000028191) #28	2410004B18Rik (ENSMUSG00000036873) #29	Syde2 (ENSMUSG00000036863) #30	Dnai3 (ENSMUSG00000043020) #31	Mcoln3 (ENSMUSG00000036853) #32	Mcoln2 (ENSMUSG00000011008) #33	Lpar3 (ENSMUSG00000036832) #34	Ssx2ip (ENSMUSG00000036825) #35	Ctbs (ENSMUSG00000028189) #36	Spata1 (ENSMUSG00000028188) #37	Gng5 (ENSMUSG00000068523)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000163522.B	ENSGT00940000162297.l	ENSGT00940000162297.k	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555.h.a.a ##18	ENSGT00940000157555.h.b ##18	ENSGT00940000160416.m #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000163583 #23	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
spretus	MODERN SPECIES	12	Gbp7 (MGP_SPRETEiJ_G0026648)	Gbp3 (MGP_SPRETEiJ_G0026649)	MGP_SPRETEiJ_G0026650	Gbp2 (MGP_SPRETEiJ_G0026651)	Kyat3 (MGP_SPRETEiJ_G0026652) #9	Gtf2b (MGP_SPRETEiJ_G0026653) #10	Pkn2 (MGP_SPRETEiJ_G0026654) #11	Lmo4 (MGP_SPRETEiJ_G0026655) #12	Hs2st1 (MGP_SPRETEiJ_G0026656) #13	MGP_SPRETEiJ_G0026657	Sh3glb1 (MGP_SPRETEiJ_G0026658) #15	MGP_SPRETEiJ_G0026659 ##18	Clca3b (MGP_SPRETEiJ_G0026660) ##18	Clca1 (MGP_SPRETEiJ_G0026661) #20	Clca2 (MGP_SPRETEiJ_G0026662) #21	Odf2l (MGP_SPRETEiJ_G0026663) #22	Col24a1 (MGP_SPRETEiJ_G0026664) #23	Znhit6 (MGP_SPRETEiJ_G0026665) #24	Ccn1 (MGP_SPRETEiJ_G0026666) #25	Ddah1 (MGP_SPRETEiJ_G0026667) #27	MGP_SPRETEiJ_G0026668 #28	2410004B18Rik (MGP_SPRETEiJ_G0026669) #29	Syde2 (MGP_SPRETEiJ_G0026670) #30	Dnai3 (MGP_SPRETEiJ_G0026671) #31	MGP_SPRETEiJ_G0026672 #32	Mcoln2 (MGP_SPRETEiJ_G0026673) #33	Lpar3 (MGP_SPRETEiJ_G0026674) #34	Ssx2ip (MGP_SPRETEiJ_G0026675) #35	Ctbs (MGP_SPRETEiJ_G0026676) #36	Spata1 (MGP_SPRETEiJ_G0026677) #37	MGP_SPRETEiJ_G0026678
Steppe mouse	MODERN SPECIES	2329										Clca3b (ENSMSIG00000002446) ##18	ENSMSIG00000002349 #19	Clca4b (ENSMSIG00000002255) #19	ENSMSIG00000002173 #19	Clca1 (ENSMSIG00000002085) #20	Clca2 (ENSMSIG00000001987) #21	Odf2l (ENSMSIG00000001842) #22
Ryukyu mouse	MODERN SPECIES	12	Gbp2 (MGP_CAROLIEiJ_G0025696)	Kyat3 (MGP_CAROLIEiJ_G0025697) #9	Gtf2b (MGP_CAROLIEiJ_G0025698) #10	Pkn2 (MGP_CAROLIEiJ_G0025699) #11	Lmo4 (MGP_CAROLIEiJ_G0025700) #12	Hs2st1 (MGP_CAROLIEiJ_G0025701) #13	MGP_CAROLIEiJ_G0025702	Sh3glb1 (MGP_CAROLIEiJ_G0025703) #15	MGP_CAROLIEiJ_G0025704 ##18	MGP_CAROLIEiJ_G0025705 ##18	Clca3b (MGP_CAROLIEiJ_G0025706) ##18	MGP_CAROLIEiJ_G0025707 #19	MGP_CAROLIEiJ_G0025708 #19	Clca1 (MGP_CAROLIEiJ_G0025709) #20	Clca2 (MGP_CAROLIEiJ_G0025710) #21	Odf2l (MGP_CAROLIEiJ_G0025711) #22	Col24a1 (MGP_CAROLIEiJ_G0025712) #23	Znhit6 (MGP_CAROLIEiJ_G0025713) #24	Ccn1 (MGP_CAROLIEiJ_G0025714) #25	Ddah1 (MGP_CAROLIEiJ_G0025715) #27	2410004B18Rik (MGP_CAROLIEiJ_G0025716) #29	Syde2 (MGP_CAROLIEiJ_G0025717) #30	Dnai3 (MGP_CAROLIEiJ_G0025718) #31	Mcoln3 (MGP_CAROLIEiJ_G0025719) #32	Mcoln2 (MGP_CAROLIEiJ_G0025720) #33	Lpar3 (MGP_CAROLIEiJ_G0025721) #34	Ssx2ip (MGP_CAROLIEiJ_G0025722) #35	Ctbs (MGP_CAROLIEiJ_G0025723) #36	Spata1 (MGP_CAROLIEiJ_G0025724) #37	MGP_CAROLIEiJ_G0025725	Rpf1 (MGP_CAROLIEiJ_G0025726)
Shrew mouse	MODERN SPECIES	17	Gbp2 (MGP_PahariEiJ_G0027145)	Kyat3 (MGP_PahariEiJ_G0027147) #9	Gtf2b (MGP_PahariEiJ_G0027148) #10	Pkn2 (MGP_PahariEiJ_G0027149) #11	Lmo4 (MGP_PahariEiJ_G0027150) #12	Hs2st1 (MGP_PahariEiJ_G0027151) #13	MGP_PahariEiJ_G0027152	Sh3glb1 (MGP_PahariEiJ_G0027153) #15	MGP_PahariEiJ_G0027154 ##18	MGP_PahariEiJ_G0027155 ##18	Clca3b (MGP_PahariEiJ_G0027156) ##18	MGP_PahariEiJ_G0027157 #19	MGP_PahariEiJ_G0027158 #19	Clca1 (MGP_PahariEiJ_G0027159) #20	Clca2 (MGP_PahariEiJ_G0027160) #21	Odf2l (MGP_PahariEiJ_G0027161) #22	Col24a1 (MGP_PahariEiJ_G0027162) #23	Znhit6 (MGP_PahariEiJ_G0027163) #24	Ccn1 (MGP_PahariEiJ_G0027164) #25	Ddah1 (MGP_PahariEiJ_G0027165) #27	Bcl10 (MGP_PahariEiJ_G0027166) #28	2410004B18Rik (MGP_PahariEiJ_G0027167) #29	Syde2 (MGP_PahariEiJ_G0027168) #30	Dnai3 (MGP_PahariEiJ_G0027169) #31	Mcoln3 (MGP_PahariEiJ_G0027170) #32	Mcoln2 (MGP_PahariEiJ_G0027171) #33	Lpar3 (MGP_PahariEiJ_G0027172) #34	Ssx2ip (MGP_PahariEiJ_G0027173) #35	Ctbs (MGP_PahariEiJ_G0027174) #36	Spata1 (MGP_PahariEiJ_G0027175) #37	MGP_PahariEiJ_G0027176
Rat	MODERN SPECIES	11	Gbp3 (ENSRNOG00000036885) ##8	Gbp1-ps1 (ENSRNOG00000023943) ##8	Gbp6-ps2 (ENSRNOG00000070399)	Kyat3 (ENSRNOG00000043426) #9	Gtf2b (ENSRNOG00000011135) #10	Pkn2 (ENSRNOG00000011317) #11	Lmo4 (ENSRNOG00000009205) #12	Hs2st1 (ENSRNOG00000012549) #13	Selenof (ENSRNOG00000055257) #14	Sh3glb1 (ENSRNOG00000012957) #15	Clca5 (ENSRNOG00000013334) ##18	Clca4l (ENSRNOG00000036877) ##18	Clca4 (ENSRNOG00000029889) #19	Clca1 (ENSRNOG00000060831) #20	Clca2 (ENSRNOG00000013771) #21	Odf2l (ENSRNOG00000014059) #22	Col24a1 (ENSRNOG00000014143) #23	Znhit6 (ENSRNOG00000030049) #24	Ccn1 (ENSRNOG00000014350) #25	Ddah1 (ENSRNOG00000014613) #27	Bcl10 (ENSRNOG00000042389) #28	C2h1orf52 (ENSRNOG00000014857) #29	Syde2 (ENSRNOG00000026186) #30	Dnai3 (ENSRNOG00000014893) #31	Mcoln3 (ENSRNOG00000015024) #32	Mcoln2 (ENSRNOG00000015089) #33	Lpar3 (ENSRNOG00000064204) #34	Ssx2ip (ENSRNOG00000015425) #35	Ctbs (ENSRNOG00000015573) #36	Spata1 (ENSRNOG00000015678) #37	ENSRNOG00000068715
Upper Galilee mountains blind mole rat	MODERN SPECIES	1893								ENSNGAG00000017891	ENSNGAG00000011552	Sh3glb1 (ENSNGAG00000008323) #15	ENSNGAG00000022151 #16	ENSNGAG00000020840 ##18	ENSNGAG00000021773 #19	Clca1 (ENSNGAG00000020353) #20	Clca2 (ENSNGAG00000017320) #21	Odf2l (ENSNGAG00000018510) #22	ENSNGAG00000015725	Znhit6 (ENSNGAG00000007630) #24	Ccn1 (ENSNGAG00000001335) #25	ENSNGAG00000003738	Ddah1 (ENSNGAG00000018033) #27	Bcl10 (ENSNGAG00000015335) #28	2410004B18Rik (ENSNGAG00000014421) #29	Syde2 (ENSNGAG00000012962) #30	Dnai3 (ENSNGAG00000011144) #31	Mcoln3 (ENSNGAG00000018883) #32	Mcoln2 (ENSNGAG00000016270) #33	Lpar3 (ENSNGAG00000020209) #34	Ssx2ip (ENSNGAG00000001910) #35	Ctbs (ENSNGAG00000008828) #36	Spata1 (ENSNGAG00000019652) #37
Lesser Egyptian jerboa	MODERN SPECIES	52	Gbp5 (ENSJJAG00000002928)	Gbp7 (ENSJJAG00000016280)	ENSJJAG00000015984	Kyat3 (ENSJJAG00000023537) #9	ENSJJAG00000017747 #10	ENSJJAG00000018524 #11	ENSJJAG00000011358 #11	Lmo4 (ENSJJAG00000012847) #12	Hs2st1 (ENSJJAG00000000519) #13	ENSJJAG00000009914	Sh3glb1 (ENSJJAG00000018470) #15	ENSJJAG00000018844 #18	ENSJJAG00000023348 #19	Clca1 (ENSJJAG00000008764) #20	Clca2 (ENSJJAG00000012700) #21	Odf2l (ENSJJAG00000007954) #22	ENSJJAG00000020958	Znhit6 (ENSJJAG00000021153) #24	Ccn1 (ENSJJAG00000018163) #25	ENSJJAG00000012670 #26	Ddah1 (ENSJJAG00000016256) #27	Bcl10 (ENSJJAG00000001473) #28	2410004B18Rik (ENSJJAG00000011597) #29	Syde2 (ENSJJAG00000018610) #30	Dnai3 (ENSJJAG00000023564) #31	Mcoln3 (ENSJJAG00000023078) #32	Mcoln2 (ENSJJAG00000014832) #33	Lpar3 (ENSJJAG00000021688) #34	Ssx2ip (ENSJJAG00000010467) #35	Ctbs (ENSJJAG00000018386) #36	ENSJJAG00000006619 #37
Kangaroo rat	MODERN SPECIES	358	Gja8 (ENSDORG00000000930)	ENSDORG00000016000	Bcl9 (ENSDORG00000003296)	Chd1l (ENSDORG00000013555)	ENSDORG00000001332	ENSDORG00000000256	Prkab2 (ENSDORG00000027473)	ENSDORG00000024515	Sec22b (ENSDORG00000023311)	Notch2 (ENSDORG00000001171)	Reg4 (ENSDORG00000009271)	Hmgcs2 (ENSDORG00000008532)	Phgdh (ENSDORG00000008531)	Clca1 (ENSDORG00000008434) #20	Clca2 (ENSDORG00000009200) #21	Odf2l (ENSDORG00000009195) #22	ENSDORG00000015616	Znhit6 (ENSDORG00000029755) #24	Ccn1 (ENSDORG00000005602) #25	Ddah1 (ENSDORG00000013259) #27	ENSDORG00000028780 #28	2410004B18Rik (ENSDORG00000012509) #29	Syde2 (ENSDORG00000005799) #30	Dnai3 (ENSDORG00000015030) #31	Mcoln3 (ENSDORG00000014635) #32	Mcoln2 (ENSDORG00000014631) #33	Lpar3 (ENSDORG00000014630) #34	Ssx2ip (ENSDORG00000015060) #35	Ctbs (ENSDORG00000015059) #36	ENSDORG00000029065 #37	ENSDORG00000029873 #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000162370	ENSGT00940000156840.b ##8	ENSGT00940000164799	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416.p #19	ENSGT00940000160416.o #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00940000162684	ENSGT00940000154265	ENSGT00940000156840.b ##8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416.p #19	ENSGT00940000160416.o #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00940000154265	ENSGT00940000156840.b ##8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416.o.f #19	ENSGT00940000160416.p #19	ENSGT00940000160416.o.e #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00940000162370	ENSGT00940000163522.A	ENSGT00940000154265	ENSGT00940000156840.b ##8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416.o.e #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00940000160313.k	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36	ENSGT00390000003298 #37
Long-tailed chinchilla	MODERN SPECIES	130	ENSCLAG00000009272 ##8	KYAT3 (ENSCLAG00000009697) #9	ENSCLAG00000009967	GTF2B (ENSCLAG00000003857) #10	PKN2 (ENSCLAG00000003946) #11	LMO4 (ENSCLAG00000004652) #12	HS2ST1 (ENSCLAG00000004928) #13	SELENOF (ENSCLAG00000004997) #14	SH3GLB1 (ENSCLAG00000005868) #15	ENSCLAG00000009271 #18	ENSCLAG00000009598 #18	ENSCLAG00000010819 #19	ENSCLAG00000007523 #19	CLCA1 (ENSCLAG00000008032) #20	CLCA2 (ENSCLAG00000004004) #21	ODF2L (ENSCLAG00000004825) #22	ENSCLAG00000006341	COL24A1 (ENSCLAG00000009364)	ENSCLAG00000011135	ZNHIT6 (ENSCLAG00000011251) #24	CCN1 (ENSCLAG00000015005) #25	ENSCLAG00000017789	DDAH1 (ENSCLAG00000003885) #27	BCL10 (ENSCLAG00000003932) #28	C1orf52 (ENSCLAG00000003961) #29	SYDE2 (ENSCLAG00000004038) #30	DNAI3 (ENSCLAG00000004279) #31	MCOLN3 (ENSCLAG00000004543) #32	MCOLN2 (ENSCLAG00000004888) #33	LPAR3 (ENSCLAG00000005453) #34	SSX2IP (ENSCLAG00000012846) #35
Degu	MODERN SPECIES	150	ENSODEG00000005921 #11	PKN2 (ENSODEG00000006053) #11	ENSODEG00000002715	ENSODEG00000002725	LMO4 (ENSODEG00000002768) #12	ENSODEG00000018964	HS2ST1 (ENSODEG00000002834) #13	ENSODEG00000002901	ENSODEG00000002911	SH3GLB1 (ENSODEG00000003003) #15	ENSODEG00000002661 #18	ENSODEG00000002677 #18	ENSODEG00000002712 #19	ENSODEG00000002790 #19	CLCA2 (ENSODEG00000002864) #21	ODF2L (ENSODEG00000002955) #22	ENSODEG00000003023	COL24A1 (ENSODEG00000003113)	ZNHIT6 (ENSODEG00000003486) #24	CCN1 (ENSODEG00000003521) #25	ENSODEG00000018975	DDAH1 (ENSODEG00000003545) #27	BCL10 (ENSODEG00000003555) #28	ENSODEG00000003582 #29	ENSODEG00000003641	SYDE2 (ENSODEG00000003681) #30	DNAI3 (ENSODEG00000003772) #31	MCOLN3 (ENSODEG00000004499) #32	MCOLN2 (ENSODEG00000004650) #33	LPAR3 (ENSODEG00000004676) #34	ENSODEG00000019111
Guinea pig	MODERN SPECIES	2	TXNIP (ENSCPOG00000027326)	HJV (ENSCPOG00000010745)	KYAT3 (ENSCPOG00000009695) #9	GTF2B (ENSCPOG00000014028) #10	PKN2 (ENSCPOG00000000537) #11	LMO4 (ENSCPOG00000012113) #12	HS2ST1 (ENSCPOG00000005010) #13	SELENOF (ENSCPOG00000037223) #14	SH3GLB1 (ENSCPOG00000015176) #15	ENSCPOG00000015253 #18	ENSCPOG00000039214 #19	ENSCPOG00000001098 #19	ENSCPOG00000014950 #19	CLCA1 (ENSCPOG00000014947) #20	CLCA2 (ENSCPOG00000014944) #21	ODF2L (ENSCPOG00000004605) #22	COL24A1 (ENSCPOG00000001259)	ZNHIT6 (ENSCPOG00000001258) #24	CCN1 (ENSCPOG00000010120) #25	ENSCPOG00000034357 #26	DDAH1 (ENSCPOG00000035239) #27	BCL10 (ENSCPOG00000033375) #28	C1orf52 (ENSCPOG00000011795) #29	SYDE2 (ENSCPOG00000001552) #30	DNAI3 (ENSCPOG00000001550) #31	MCOLN3 (ENSCPOG00000030466) #32	MCOLN2 (ENSCPOG00000006755) #33	LPAR3 (ENSCPOG00000035050) #34	SSX2IP (ENSCPOG00000012045) #35	CTBS (ENSCPOG00000009243) #36	ENSCPOG00000033072 #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	10	GBP1 (ENSHGLG00000008509) ##8	CCBL2 (ENSHGLG00000004456) #9	GTF2B (ENSHGLG00000045614) #10	PKN2 (ENSHGLG00000006153) #11	LMO4 (ENSHGLG00000038005) #12	HS2ST1 (ENSHGLG00000008512) #13	SELENOF (ENSHGLG00000044599) #14	ENSHGLG00000006117 #15	ENSHGLG00000007822 #18	ENSHGLG00000035709 #19	ENSHGLG00000012115 #19	ENSHGLG00000015121	ENSHGLG00000037078 #19	CLCA1 (ENSHGLG00000015470) #20	CLCA2 (ENSHGLG00000015413) #21	ENSHGLG00000010829 #22	COL24A1 (ENSHGLG00000004244)	ENSHGLG00000036484	ZNHIT6 (ENSHGLG00000007009) #24	CCN1 (ENSHGLG00000007980) #25	DDAH1 (ENSHGLG00000047230) #27	ENSHGLG00000033883	ENSHGLG00000041300	BCL10 (ENSHGLG00000004369) #28	C1orf52 (ENSHGLG00000004452) #29	ENSHGLG00000039413	SYDE2 (ENSHGLG00000005398) #30	ENSHGLG00000006816 #31	ENSHGLG00000047666	MCOLN3 (ENSHGLG00000009140) #32	ENSHGLG00000005122 #33
Naked mole-rat female	MODERN SPECIES	11	ARF6 (ENSHGLG00000040454)	NEMF (ENSHGLG00000014110)	KLHDC2 (ENSHGLG00000014323)	KLHDC1 (ENSHGLG00000014487)	POLE2 (ENSHGLG00000015308)	ENSHGLG00000032032	ENSHGLG00000010009	MGAT2 (ENSHGLG00000020857)	ENSHGLG00000035140	ENSHGLG00000013547	RPS29 (ENSHGLG00000033323)	ENSHGLG00000047775	ENSHGLG00000038797	ENSHGLG00000033780	ENSHGLG00000017089	ENSHGLG00000036645 #22	ENSHGLG00000016763	ENSHGLG00000032093	ENSHGLG00000048747	ENSHGLG00000048597	ENSHGLG00000040429	ENSHGLG00000019549	ENSHGLG00000000611	ENSHGLG00000016363	FANCM (ENSHGLG00000013787)	ENSHGLG00000012727	FKBP3 (ENSHGLG00000012484)	ENSHGLG00000012015	ENSHGLG00000036376	TOGARAM1 (ENSHGLG00000014098)	KLHL28 (ENSHGLG00000045138)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000048158	ENSHGLG00000008066	ENSHGLG00000009411	ENSHGLG00000038882	ENSHGLG00000049879	ENSHGLG00000009383	PDSS1 (ENSHGLG00000004870)	APBB1IP (ENSHGLG00000006286)	GAD2 (ENSHGLG00000007030)	MYO3A (ENSHGLG00000008329)	ENSHGLG00000048157	ENSHGLG00000004801	ENSHGLG00000040816	ENSHGLG00000034504	ENSHGLG00000044474	ENSHGLG00000047037 #22	ENSHGLG00000044566	ENSHGLG00000045437	ENSHGLG00000004916	ENKUR (ENSHGLG00000005349)	ARHGAP21 (ENSHGLG00000008443)	ENSHGLG00000036882	ENSHGLG00000008277	ENSHGLG00000011626	ENSHGLG00000038637	ENSHGLG00000013293	MSRB2 (ENSHGLG00000009558)	ARMC3 (ENSHGLG00000010508)	PIP4K2A (ENSHGLG00000041790)	ENSHGLG00000047021	BMI1 (ENSHGLG00000032421)
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000163522.A	ENSGT00940000156840.b ##8	ENSGT00940000164799	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416.p #19	ENSGT00940000160416.o #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00940000168548	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36
Marmotini	ANCESTRAL SPECIES		ENSGT00940000163522.A.d	ENSGT00940000163522.A.c.a	ENSGT00940000156840.b ##8	ENSGT00940000155827 #9	ENSGT00390000006671 #10	ENSGT00940000154339 #11	ENSGT00940000157730 #12	ENSGT00530000063408.B #13	ENSGT00940000154284.a #14	ENSGT00940000155667 #15	ENSGT00940000157555 #18	ENSGT00940000160416.p #19	ENSGT00940000160416.o.a #19	ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00940000168548	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000003718.d.kd.b	ENSGT00390000017398 #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35
Marmotini_b	ANCESTRAL SPECIES	166														ENSGT00940000154682.C #20	ENSGT00940000161548 #21	ENSGT00530000063497.b #22	ENSGT00940000162448	ENSGT00390000017201 #24	ENSGT00940000155151.b #25	ENSGT00960000186747 #26	ENSGT00940000157892 #27	ENSGT00490000043442 #28	ENSGT00390000003718.d.kd.b	ENSGT00390000017398.i #29	ENSGT01030000234635.a.a.a.a #30	ENSGT00940000156924 #31	ENSGT00950000183036.a.a #32	ENSGT00950000183036.a.b #33	ENSGT01050000244941.B.d #34	ENSGT00390000007688 #35	ENSGT00390000012891 #36
Arctic ground squirrel	MODERN SPECIES	330														CLCA1 (ENSUPAG00010012033) #20	CLCA2 (ENSUPAG00010011985) #21	ODF2L (ENSUPAG00010011819) #22	ENSUPAG00010011804	ZNHIT6 (ENSUPAG00010011778) #24	CCN1 (ENSUPAG00010011774) #25	ENSUPAG00010011773 #26	DDAH1 (ENSUPAG00010011761) #27	BCL10 (ENSUPAG00010011755) #28	ENSUPAG00010011746	ENSUPAG00010011740 #29	SYDE2 (ENSUPAG00010011732) #30	DNAI3 (ENSUPAG00010011711) #31	MCOLN3 (ENSUPAG00010011700) #32	MCOLN2 (ENSUPAG00010011678) #33	LPAR3 (ENSUPAG00010011664) #34	SSX2IP (ENSUPAG00010011627) #35	CTBS (ENSUPAG00010011611) #36
Squirrel	MODERN SPECIES	464															CLCA2 (ENSSTOG00000001512) #21	ODF2L (ENSSTOG00000001496) #22	ENSSTOG00000009458
Alpin marmot	MODERN SPECIES	96	GBP1 (ENSMMMG00000006605) ##8	KYAT3 (ENSMMMG00000006615) #9	GTF2B (ENSMMMG00000006649) #10	PKN2 (ENSMMMG00000006656) #11	LMO4 (ENSMMMG00000006756) #12	HS2ST1 (ENSMMMG00000006768) #13	SELENOF (ENSMMMG00000006786) #14	SH3GLB1 (ENSMMMG00000006806) #15	ENSMMMG00000006864	ENSMMMG00000006866 #18	ENSMMMG00000006883 #19	ENSMMMG00000007100 #19	ENSMMMG00000008525 #19	CLCA1 (ENSMMMG00000008544) #20	CLCA2 (ENSMMMG00000008561) #21	ODF2L (ENSMMMG00000008590) #22	ENSMMMG00000008742	ENSMMMG00000008750	ENSMMMG00000008758	ZNHIT6 (ENSMMMG00000008767) #24	CCN1 (ENSMMMG00000008796) #25	ENSMMMG00000008810 #26	DDAH1 (ENSMMMG00000008813) #27	ENSMMMG00000008820 #28	ENSMMMG00000008825	C1orf52 (ENSMMMG00000008832) #29	SYDE2 (ENSMMMG00000008839) #30	DNAI3 (ENSMMMG00000008854) #31	MCOLN3 (ENSMMMG00000008888) #32	MCOLN2 (ENSMMMG00000008910) #33	LPAR3 (ENSMMMG00000008955) #34
Eurasian red squirrel	MODERN SPECIES		GTF2B (ENSSVLG00005002028) #10	ENSSVLG00005002015	PKN2 (ENSSVLG00005001961) #11	ENSSVLG00005001932	LMO4 (ENSSVLG00005001906) #12	ENSSVLG00005001891	HS2ST1 (ENSSVLG00005001867) #13	ENSSVLG00005001852	SELENOF (ENSSVLG00005001833) #14	SH3GLB1 (ENSSVLG00005001770) #15	ENSSVLG00005001691 #18	ENSSVLG00005001399 #19	ENSSVLG00005001134 #19	CLCA1 (ENSSVLG00005001099) #20	CLCA2 (ENSSVLG00005001063) #21	ODF2L (ENSSVLG00005001026) #22	ENSSVLG00005000969	ENSSVLG00005000957	COL24A1 (ENSSVLG00005000916)	ENSSVLG00005000886	ZNHIT6 (ENSSVLG00005000846) #24	ENSSVLG00005000810	CCN1 (ENSSVLG00005000795) #25	ENSSVLG00005000783 #26	ENSSVLG00005000769	DDAH1 (ENSSVLG00005000747) #27	ENSSVLG00005000713	ENSSVLG00005000702	BCL10 (ENSSVLG00005000684) #28	C1orf52 (ENSSVLG00005000674) #29	GABARAP (ENSSVLG00005000657)