Gnathostomata	ANCESTRAL SPECIES																	ENSGT00390000003107.b #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00390000003107.b #22
Sarcopterygii	ANCESTRAL SPECIES	43	ENSGT00940000153117.B	ENSGT00440000039837	ENSGT00940000154790.b	ENSGT00930000151014	ENSGT00940000159815	ENSGT00940000160164	ENSGT00940000160358 #13	ENSGT00940000166395	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000157969	ENSGT00940000161850	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000161006 #36	ENSGT00940000175873	ENSGT00940000159603	ENSGT00940000157351	ENSGT00390000006233.c.b	ENSGT00410000025615	ENSGT00940000158204	ENSGT00940000164753	ENSGT00550000075065	ENSGT00940000159703	ENSGT00940000160070	ENSGT00950000183044.a.a.a	ENSGT00950000182933.A.a.a	ENSGT00390000002725	ENSGT00940000156853
Tetrapoda	ANCESTRAL SPECIES	71	ENSGT00940000153117.B	ENSGT00440000039837	ENSGT00940000154790.b	ENSGT00930000151014	ENSGT00940000159815	ENSGT00940000160164	ENSGT00940000160358 #13	ENSGT00940000166395	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000177245	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000161006 #36	ENSGT00940000158785	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00950000183024.a.b.b	ENSGT00950000183095.a.b.a.b.a	ENSGT00390000017583	ENSGT00940000159485	ENSGT00970000193421.A	ENSGT00940000154553.a.a	ENSGT01030000234635.a.b.a.b.b.a.b	ENSGT00940000161295	ENSGT00390000012863	ENSGT00390000012948.a
Amniota	ANCESTRAL SPECIES	34	ENSGT00940000159555	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b #7	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000177245	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000158721	ENSGT01100000263564.a	ENSGT00530000063950.a.b	ENSGT00550000075007	ENSGT00940000160011	ENSGT00940000165053	ENSGT00950000182985.a.b	ENSGT00940000160348	ENSGT00390000009423.b	ENSGT00940000160509	ENSGT00940000164056	ENSGT00940000158234	ENSGT00940000153881.b	ENSGT00940000156343	ENSGT00390000014810.a
Mammalia	ANCESTRAL SPECIES	75	ENSGT00950000182772.A.a.a.b #7	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000177245	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00390000017608 #21	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00940000161740 #34	ENSGT00950000183135.A.a #33	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00940000171396
Theria	ANCESTRAL SPECIES	27	ENSGT00940000171396	ENSGT00940000154133.B #35	ENSGT00940000161740 #34	ENSGT00950000183135.A.a #33	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00940000162120 #31	ENSGT00940000162453 #30	ENSGT00390000017045 #29	ENSGT00500000044869.a.b #28	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00570000080851 #24	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00390000017608 #21	ENSGT00940000161988 #20	ENSGT00940000153887.B #19	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00390000009795 #17	ENSGT00940000156765 #16	ENSGT00940000160599 #14	ENSGT00940000160358 #13	ENSGT00390000011275 #12	ENSGT00450000040362 #11	ENSGT00940000160551 #10	ENSGT00950000182970.C #9	ENSGT00940000162356 #8	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b #7
Eutheria	ANCESTRAL SPECIES	29	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608 #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Primates	ANCESTRAL SPECIES	15	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Macaca	ANCESTRAL SPECIES	12	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Pig-tailed macaque	MODERN SPECIES	551	CKM (ENSMNEG00000034259) #7	KLC3 (ENSMNEG00000040957) #8	ERCC2 (ENSMNEG00000042641) #9	PPP1R13L (ENSMNEG00000034033) #10	POLR1G (ENSMNEG00000028086) #11	ERCC1 (ENSMNEG00000012554) #12	FOSB (ENSMNEG00000038931) #13	RTN2 (ENSMNEG00000034805) #14	PPM1N (ENSMNEG00000033670) #15	VASP (ENSMNEG00000031417) #16	OPA3 (ENSMNEG00000040409) #17	GPR4 (ENSMNEG00000002892) #18	ENSMNEG00000042527 #19	GIPR (ENSMNEG00000035353) #20	ENSMNEG00000039787 #21	QPCTL (ENSMNEG00000035757) #22	FBXO46 (ENSMNEG00000027865) #23	MEIOSIN (ENSMNEG00000043184) #24	SIX5 (ENSMNEG00000032313) #25	DMPK (ENSMNEG00000037335) #26	DMWD (ENSMNEG00000031944) #27	RSPH6A (ENSMNEG00000040843) #28	SYMPK (ENSMNEG00000019439) #29	FOXA3 (ENSMNEG00000040470) #30	IRF2BP1 (ENSMNEG00000017409) #31	MYPOP (ENSMNEG00000031648) #32	NANOS2 (ENSMNEG00000004633) #33	NOVA2 (ENSMNEG00000040253) #34	CCDC61 (ENSMNEG00000035233) #35	PGLYRP1 (ENSMNEG00000011734) #36	ENSMNEG00000023075 #37
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.a.a.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00990000210495	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000028171	ENSMFAG00000062481	KLC3 (ENSMFAG00000041224) #8	ERCC2 (ENSMFAG00000037898) #9	ENSMFAG00000056756 #10	POLR1G (ENSMFAG00000006908) #11	ERCC1 (ENSMFAG00000001814) #12	ENSMFAG00000064222	FOSB (ENSMFAG00000038029) #13	RTN2 (ENSMFAG00000002551) #14	PPM1N (ENSMFAG00000040939) #15	VASP (ENSMFAG00000036820) #16	OPA3 (ENSMFAG00000045575) #17	EML2 (ENSMFAG00000001217) #19	GIPR (ENSMFAG00000043015) #20	QPCTL (ENSMFAG00000009032) #22	FBXO46 (ENSMFAG00000004080) #23	MEIOSIN (ENSMFAG00000038095) #24	ENSMFAG00000054039	DMPK (ENSMFAG00000037913) #26	DMWD (ENSMFAG00000033696) #27	RSPH6A (ENSMFAG00000029233) #28	SYMPK (ENSMFAG00000038558) #29	FOXA3 (ENSMFAG00000040557) #30	IRF2BP1 (ENSMFAG00000061076) #31	NANOS2 (ENSMFAG00000017215) #33	NOVA2 (ENSMFAG00000043672) #34	CCDC61 (ENSMFAG00000035042) #35	PGLYRP1 (ENSMFAG00000032464) #36	ENSMFAG00000001824 #37	IGFL3 (ENSMFAG00000003659) ##37
Rhesus	MODERN SPECIES	10	ERCC2 (ENSMMUG00000014419) #9	PPP1R13L (ENSMMUG00000000715) #10	POLR1G (ENSMMUG00000000717) #11	ERCC1 (ENSMMUG00000000718) #12	ENSMMUG00000049515	FOSB (ENSMMUG00000014430) #13	RTN2 (ENSMMUG00000011716) #14	PPM1N (ENSMMUG00000011715) #15	VASP (ENSMMUG00000022938) #16	OPA3 (ENSMMUG00000053242) #17	ENSMMUG00000058115	GPR4 (ENSMMUG00000019031) #18	ENSMMUG00000019032 #19	GIPR (ENSMMUG00000006936) #20	SNRPD2 (ENSMMUG00000006937) #21	QPCTL (ENSMMUG00000006940) #22	FBXO46 (ENSMMUG00000021360) #23	MEIOSIN (ENSMMUG00000049025) #24	SIX5 (ENSMMUG00000051573) #25	DMPK (ENSMMUG00000016457) #27	RSPH6A (ENSMMUG00000006590) #28	ENSMMUG00000056347	SYMPK (ENSMMUG00000015428) #29	FOXA3 (ENSMMUG00000015438) #30	MYPOP (ENSMMUG00000049820) #32	NANOS2 (ENSMMUG00000008103) #33	NOVA2 (ENSMMUG00000004085) #34	CCDC61 (ENSMMUG00000008741) #35	PGLYRP1 (ENSMMUG00000008742) #36	ENSMMUG00000041352 #37	IGFL3 (ENSMMUG00000063797) ##37
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Olive baboon	MODERN SPECIES	12	SNRNP70 (ENSPANG00000004068)	KCNA7 (ENSPANG00000010667)	NTF4 (ENSPANG00000005193)	PPP1R13L (ENSPANG00000008539) #10	POLR1G (ENSPANG00000014599) #11	ERCC1 (ENSPANG00000014628) #12	FOSB (ENSPANG00000002665) #13	RTN2 (ENSPANG00000009463) #14	PPM1N (ENSPANG00000005403) #15	VASP (ENSPANG00000019931) #16	OPA3 (ENSPANG00000031982) #17	GPR4 (ENSPANG00000013282) #18	EML2 (ENSPANG00000007941) #19	GIPR (ENSPANG00000014706) #20	ENSPANG00000008802 #21	QPCTL (ENSPANG00000016116) #22	FBXO46 (ENSPANG00000002640) #23	MEIOSIN (ENSPANG00000018287) #24	SIX5 (ENSPANG00000005316) #25	DMPK (ENSPANG00000002664) #26	DMWD (ENSPANG00000001288) #27	RSPH6A (ENSPANG00000011597) #28	SYMPK (ENSPANG00000019930) #29	FOXA3 (ENSPANG00000034535) #30	IRF2BP1 (ENSPANG00000002641) #31	MYPOP (ENSPANG00000046784) #32	NANOS2 (ENSPANG00000009327) #33	NOVA2 (ENSPANG00000023868) #34	CCDC61 (ENSPANG00000009365) #35	PGLYRP1 (ENSPANG00000048485) #36	IGFL3 (ENSPANG00000019926) ##37
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Drill	MODERN SPECIES	494	KLC3 (ENSMLEG00000040381) #8	ERCC2 (ENSMLEG00000043492) #9	ENSMLEG00000031086 #10	POLR1G (ENSMLEG00000043530) #11	ERCC1 (ENSMLEG00000029656) #12	FOSB (ENSMLEG00000033569) #13	RTN2 (ENSMLEG00000031919) #14	ENSMLEG00000013387 #15	VASP (ENSMLEG00000041511) #16	OPA3 (ENSMLEG00000040108) #17	ENSMLEG00000031803	GPR4 (ENSMLEG00000003807) #18	ENSMLEG00000030229 #19	GIPR (ENSMLEG00000043576) #20	SNRPD2 (ENSMLEG00000033961) #21	QPCTL (ENSMLEG00000013540) #22	ENSMLEG00000038790	MEIOSIN (ENSMLEG00000038011) #24	ENSMLEG00000037131 #25	DMPK (ENSMLEG00000039408) #26	DMWD (ENSMLEG00000020384) #27	RSPH6A (ENSMLEG00000038849) #28	SYMPK (ENSMLEG00000040508) #29	FOXA3 (ENSMLEG00000036460) #30	MYPOP (ENSMLEG00000034017) #32	NANOS2 (ENSMLEG00000001810) #33	NOVA2 (ENSMLEG00000030389) #34	ENSMLEG00000043809 #35	PGLYRP1 (ENSMLEG00000039016) #36	ENSMLEG00000040495	IGFL3 (ENSMLEG00000035741) ##37
Sooty mangabey	MODERN SPECIES	228	KLC3 (ENSCATG00000043270) #8	ENSCATG00000044649 #9	ENSCATG00000031579 #9	PPP1R13L (ENSCATG00000034656) #10	POLR1G (ENSCATG00000030677) #11	ERCC1 (ENSCATG00000015252) #12	FOSB (ENSCATG00000042659) #13	RTN2 (ENSCATG00000038527) #14	PPM1N (ENSCATG00000038667) #15	VASP (ENSCATG00000042996) #16	OPA3 (ENSCATG00000032509) #17	GPR4 (ENSCATG00000015059) #18	EML2 (ENSCATG00000044498) #19	GIPR (ENSCATG00000039010) #20	ENSCATG00000031591 #21	QPCTL (ENSCATG00000035425) #22	FBXO46 (ENSCATG00000019580) #23	MEIOSIN (ENSCATG00000014100) #24	SIX5 (ENSCATG00000034595) #25	DMPK (ENSCATG00000044065) #26	DMWD (ENSCATG00000041290) #27	RSPH6A (ENSCATG00000031236) #28	SYMPK (ENSCATG00000045107) #29	FOXA3 (ENSCATG00000040589) #30	IRF2BP1 (ENSCATG00000019478) #31	MYPOP (ENSCATG00000044811) #32	NANOS2 (ENSCATG00000018951) #33	NOVA2 (ENSCATG00000045122) #34	CCDC61 (ENSCATG00000033104) #35	PGLYRP1 (ENSCATG00000018338) #36	IGFL4 (ENSCATG00000019969) #37
Vervet Monkey	MODERN SPECIES	25	CKM (ENSCSAG00000003204) #7	KLC3 (ENSCSAG00000003201) #8	ERCC2 (ENSCSAG00000003189) #9	ENSCSAG00000003187 #10	PPP1R13L (ENSCSAG00000003183) #10	POLR1G (ENSCSAG00000003181) #11	ERCC1 (ENSCSAG00000003179) #12	ENSCSAG00000003176 #13	RTN2 (ENSCSAG00000003175) #14	PPM1N (ENSCSAG00000003172) #15	VASP (ENSCSAG00000003169) #16	OPA3 (ENSCSAG00000003168) #17	GPR4 (ENSCSAG00000019626) #18	GIPR (ENSCSAG00000003163) #20	SNRPD2 (ENSCSAG00000003157) #21	QPCTL (ENSCSAG00000003156) #22	FBXO46 (ENSCSAG00000019627) #23	MEIOSIN (ENSCSAG00000003154) #24	SIX5 (ENSCSAG00000003151) #25	DMPK (ENSCSAG00000003146) #26	DMWD (ENSCSAG00000003130) #27	RSPH6A (ENSCSAG00000003122) #28	SYMPK (ENSCSAG00000003115) #29	FOXA3 (ENSCSAG00000003110) #30	IRF2BP1 (ENSCSAG00000019628) #31	MYPOP (ENSCSAG00000003108) #32	NANOS2 (ENSCSAG00000019629) #33	NOVA2 (ENSCSAG00000003105) #34	CCDC61 (ENSCSAG00000003098) #35	PGLYRP1 (ENSCSAG00000003083) #36	IGFL4 (ENSCSAG00000003076) #37
Rhinopithecus	ANCESTRAL SPECIES	16	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765.p #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Golden snub-nosed monkey	MODERN SPECIES	2027	KLC3 (ENSRROG00000006762) #8	ERCC2 (ENSRROG00000040423) #9	ENSRROG00000041629 #10	POLR1G (ENSRROG00000043410) #11	ERCC1 (ENSRROG00000043870) #12	FOSB (ENSRROG00000014678) #13	ENSRROG00000044485	RTN2 (ENSRROG00000038364) #14	PPM1N (ENSRROG00000029244) #15	VASP (ENSRROG00000044619) #16	OPA3 (ENSRROG00000034269) #17	GPR4 (ENSRROG00000019999) #18	EML2 (ENSRROG00000035796) #19	GIPR (ENSRROG00000031321) #20	SNRPD2 (ENSRROG00000034764) #21	QPCTL (ENSRROG00000043413) #22	FBXO46 (ENSRROG00000027737) #23	MEIOSIN (ENSRROG00000037479) #24	SIX5 (ENSRROG00000026145) #25	DMPK (ENSRROG00000037325) #26	DMWD (ENSRROG00000036990) #27	RSPH6A (ENSRROG00000038540) #28	SYMPK (ENSRROG00000024834) #29	FOXA3 (ENSRROG00000041934) #30	IRF2BP1 (ENSRROG00000024812) #31	MYPOP (ENSRROG00000031078) #32	NANOS2 (ENSRROG00000014903) #33	NOVA2 (ENSRROG00000037399) #34	CCDC61 (ENSRROG00000032654) #35	PGLYRP1 (ENSRROG00000035762) #36	IGFL4 (ENSRROG00000043261) #37
Black snub-nosed monkey	MODERN SPECIES	477	CKM (ENSRBIG00000040733) #7	KLC3 (ENSRBIG00000029912) #8	ERCC2 (ENSRBIG00000031575) #9	ENSRBIG00000028434 #10	POLR1G (ENSRBIG00000040738) #11	ERCC1 (ENSRBIG00000043956) #12	FOSB (ENSRBIG00000028796) #13	ENSRBIG00000034412 #14	PPM1N (ENSRBIG00000033587) #15	ENSRBIG00000034996 #16	OPA3 (ENSRBIG00000038135) #17	GPR4 (ENSRBIG00000032340) #18	EML2 (ENSRBIG00000027020) #19	GIPR (ENSRBIG00000044071) #20	ENSRBIG00000040969 #21	QPCTL (ENSRBIG00000037229) #22	FBXO46 (ENSRBIG00000013409) #23	MEIOSIN (ENSRBIG00000043746) #24	SIX5 (ENSRBIG00000013549) #25	DMPK (ENSRBIG00000033839) #26	DMWD (ENSRBIG00000038254) #27	RSPH6A (ENSRBIG00000044850) #28	SYMPK (ENSRBIG00000040963) #29	FOXA3 (ENSRBIG00000037992) #30	IRF2BP1 (ENSRBIG00000025631) #31	MYPOP (ENSRBIG00000035669) #32	NANOS2 (ENSRBIG00000023726) #33	CCDC61 (ENSRBIG00000027796) #35	PGLYRP1 (ENSRBIG00000041217) #36	IGFL4 (ENSRBIG00000017354) #37	ENSRBIG00000026369
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000013067.a.a	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Hominidae	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Pan	ANCESTRAL SPECIES	9	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Chimpanzee	MODERN SPECIES	10	CKM (ENSPTRG00000011147) #7	KLC3 (ENSPTRG00000011148) #8	ERCC2 (ENSPTRG00000011149) #9	PPP1R13L (ENSPTRG00000011150) #10	POLR1G (ENSPTRG00000011151) #11	ERCC1 (ENSPTRG00000011152) #12	FOSB (ENSPTRG00000046160) #13	RTN2 (ENSPTRG00000047264) #14	PPM1N (ENSPTRG00000047461) #15	VASP (ENSPTRG00000046601) #16	OPA3 (ENSPTRG00000045719) #17	GPR4 (ENSPTRG00000051128) #18	ENSPTRG00000048889 #19	GIPR (ENSPTRG00000050104) #20	SNRPD2 (ENSPTRG00000011162) #21	QPCTL (ENSPTRG00000011163) #22	FBXO46 (ENSPTRG00000038848) #23	MEIOSIN (ENSPTRG00000041781) #24	SIX5 (ENSPTRG00000033681) #25	DMPK (ENSPTRG00000011166) #26	DMWD (ENSPTRG00000011165) #27	RSPH6A (ENSPTRG00000011168) #28	SYMPK (ENSPTRG00000011169) #29	FOXA3 (ENSPTRG00000011170) #30	IRF2BP1 (ENSPTRG00000011171) #31	MYPOP (ENSPTRG00000028972) #32	NANOS2 (ENSPTRG00000011172) #33	NOVA2 (ENSPTRG00000011173) #34	CCDC61 (ENSPTRG00000039834) #35	PGLYRP1 (ENSPTRG00000011175) #36	IGFL4 (ENSPTRG00000051124) #37
Bonobo	MODERN SPECIES	10	CKM (ENSPPAG00000037821) #7	KLC3 (ENSPPAG00000043966) #8	ERCC2 (ENSPPAG00000044005) #9	ENSPPAG00000036951 #10	POLR1G (ENSPPAG00000004958) #11	ERCC1 (ENSPPAG00000043568) #12	FOSB (ENSPPAG00000035998) #13	RTN2 (ENSPPAG00000038328) #14	ENSPPAG00000030480 #15	VASP (ENSPPAG00000037088) #16	ENSPPAG00000040725 #17	GPR4 (ENSPPAG00000008436) #18	ENSPPAG00000013251 #19	GIPR (ENSPPAG00000030152) #20	SNRPD2 (ENSPPAG00000038031) #21	QPCTL (ENSPPAG00000028397) #22	FBXO46 (ENSPPAG00000022797) #23	MEIOSIN (ENSPPAG00000042669) #24	ENSPPAG00000037802 #25	DMPK (ENSPPAG00000043247) #26	DMWD (ENSPPAG00000037733) #27	RSPH6A (ENSPPAG00000043932) #28	SYMPK (ENSPPAG00000043204) #29	FOXA3 (ENSPPAG00000042745) #30	MYPOP (ENSPPAG00000017638) #32	NANOS2 (ENSPPAG00000020568) #33	ENSPPAG00000035049 #34	ENSPPAG00000030915 #35	PGLYRP1 (ENSPPAG00000039034) #36	IGFL4 (ENSPPAG00000040782) #37	IGFL3 (ENSPPAG00000022284) ##37
Human	MODERN SPECIES	10	CKM (ENSG00000104879) #7	KLC3 (ENSG00000104892) #8	ERCC2 (ENSG00000104884) #9	PPP1R13L (ENSG00000104881) #10	POLR1G (ENSG00000117877) #11	ERCC1 (ENSG00000012061) #12	FOSB (ENSG00000125740) #13	RTN2 (ENSG00000125744) #14	PPM1N (ENSG00000213889) #15	VASP (ENSG00000125753) #16	OPA3 (ENSG00000125741) #17	GPR4 (ENSG00000177464) #18	EML2 (ENSG00000125746) #19	GIPR (ENSG00000010310) #20	SNRPD2 (ENSG00000125743) #21	QPCTL (ENSG00000011478) #22	FBXO46 (ENSG00000177051) #23	MEIOSIN (ENSG00000237452) #24	SIX5 (ENSG00000177045) #25	DMPK (ENSG00000104936) #26	ENSG00000268434	DMWD (ENSG00000185800) #27	RSPH6A (ENSG00000104941) #28	SYMPK (ENSG00000125755) #29	FOXA3 (ENSG00000170608) #30	IRF2BP1 (ENSG00000170604) #31	MYPOP (ENSG00000176182) #32	NANOS2 (ENSG00000188425) #33	NOVA2 (ENSG00000104967) #34	CCDC61 (ENSG00000104983) #35	PGLYRP1 (ENSG00000008438) #36
Gorilla	MODERN SPECIES	10	MARK4 (ENSGGOG00000008801)	CKM (ENSGGOG00000008806) #7	KLC3 (ENSGGOG00000015830) #8	ERCC2 (ENSGGOG00000015842) #9	ENSGGOG00000015872 #11	ERCC1 (ENSGGOG00000014332) #12	FOSB (ENSGGOG00000010952) #13	RTN2 (ENSGGOG00000009863) #14	PPM1N (ENSGGOG00000000024) #15	VASP (ENSGGOG00000009879) #16	ENSGGOG00000009890 #17	GPR4 (ENSGGOG00000043968) #18	ENSGGOG00000015482 #19	GIPR (ENSGGOG00000016144) #20	SNRPD2 (ENSGGOG00000002350) #21	QPCTL (ENSGGOG00000002353) #22	FBXO46 (ENSGGOG00000027287) #23	BHMG1 (ENSGGOG00000036840) #24	SIX5 (ENSGGOG00000007958) #25	DMPK (ENSGGOG00000007967) #26	DMWD (ENSGGOG00000007982) #27	RSPH6A (ENSGGOG00000003405) #28	SYMPK (ENSGGOG00000003410) #29	FOXA3 (ENSGGOG00000003972) #30	IRF2BP1 (ENSGGOG00000023972) #31	MYPOP (ENSGGOG00000017080) #32	NANOS2 (ENSGGOG00000013447) #33	NOVA2 (ENSGGOG00000000325) #34	ENSGGOG00000011115 #35	PGLYRP1 (ENSGGOG00000011126) #36	IGFL4 (ENSGGOG00000027623) #37
Orangutan	MODERN SPECIES	10	CKM (ENSPPYG00000010114) #7	KLC3 (ENSPPYG00000010116) #8	ERCC2 (ENSPPYG00000010117) #9	PPP1R13L (ENSPPYG00000010118) #10	POLR1G (ENSPPYG00000010119) #11	ERCC1 (ENSPPYG00000010120) #12	FOSB (ENSPPYG00000010121) #13	RTN2 (ENSPPYG00000010122) #14	PPM1N (ENSPPYG00000030671) #15	VASP (ENSPPYG00000010124) #16	ENSPPYG00000032022 #17	GPR4 (ENSPPYG00000010126) #18	ENSPPYG00000010127 #19	GIPR (ENSPPYG00000010128) #20	ENSPPYG00000010129 #21	QPCTL (ENSPPYG00000010130) #22	FBXO46 (ENSPPYG00000041185) #23	MEIOSIN (ENSPPYG00000036674) #24	SIX5 (ENSPPYG00000010131) #25	DMPK (ENSPPYG00000010132) #26	DMWD (ENSPPYG00000010133) #27	RSPH6A (ENSPPYG00000010134) #28	SYMPK (ENSPPYG00000010135) #29	FOXA3 (ENSPPYG00000010580) #30	IRF2BP1 (ENSPPYG00000010136) #31	ENSPPYG00000031914 #32	NANOS2 (ENSPPYG00000010138) #33	NOVA2 (ENSPPYG00000010139) #34	CCDC61 (ENSPPYG00000010140) #35	PGLYRP1 (ENSPPYG00000010141) #36	IGFL4 (ENSPPYG00000010142) #37
Gibbon	MODERN SPECIES	7	ENSNLEG00000001978 #7	ENSNLEG00000035942	ENSNLEG00000001990 #8	ENSNLEG00000001994 #9	ENSNLEG00000002011 #10	POLR1G (ENSNLEG00000035363) #11	ENSNLEG00000002069 #12	FOSB (ENSNLEG00000002090) #13	RTN2 (ENSNLEG00000002100) #14	PPM1N (ENSNLEG00000002225) #15	VASP (ENSNLEG00000002237) #16	ENSNLEG00000002240 #17	GPR4 (ENSNLEG00000030194) #18	ENSNLEG00000002246 #19	SNRPD2 (ENSNLEG00000002274) #21	ENSNLEG00000002287 #22	ENSNLEG00000031904	MEIOSIN (ENSNLEG00000002294) #24	ENSNLEG00000002295 #25	DMPK (ENSNLEG00000002298) #26	DMWD (ENSNLEG00000002321) #27	RSPH6A (ENSNLEG00000002328) #28	SYMPK (ENSNLEG00000002369) #29	FOXA3 (ENSNLEG00000002392) #30	IRF2BP1 (ENSNLEG00000018408) #31	MYPOP (ENSNLEG00000002401) #32	ENSNLEG00000002399 #34	CCDC61 (ENSNLEG00000002402) #35	PGLYRP1 (ENSNLEG00000002422) #36	IGFL4 (ENSNLEG00000002438) #37	IGFL3 (ENSNLEG00000002440) ##37
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.C.c ##37
Cebidae	ANCESTRAL SPECIES	8	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765.k #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb.d #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.C.c ##37
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765.k #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb.d #21	ENSGT00390000017608.b.nb.c.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.C.c ##37	ENSGT00940000161745
Capuchin	MODERN SPECIES	296	CKM (ENSCCAG00000021924) #7	KLC3 (ENSCCAG00000023117) #8	ERCC2 (ENSCCAG00000019831) #9	PPP1R13L (ENSCCAG00000033595) #10	POLR1G (ENSCCAG00000024253) #11	ERCC1 (ENSCCAG00000019653) #12	FOSB (ENSCCAG00000025333) #13	RTN2 (ENSCCAG00000029809) #14	PPM1N (ENSCCAG00000033653) #15	ENSCCAG00000029400 #16	OPA3 (ENSCCAG00000027564) #17	GPR4 (ENSCCAG00000014726) #18	EML2 (ENSCCAG00000030345) #19	GIPR (ENSCCAG00000026591) #20	SNRPD2 (ENSCCAG00000035396) #21	QPCTL (ENSCCAG00000006394) #22	ENSCCAG00000004615 #23	MEIOSIN (ENSCCAG00000026595) #24	SIX5 (ENSCCAG00000021156) #25	DMPK (ENSCCAG00000000286) #26	DMWD (ENSCCAG00000035234) #27	RSPH6A (ENSCCAG00000026332) #28	SYMPK (ENSCCAG00000036309) #29	FOXA3 (ENSCCAG00000025829) #30	IRF2BP1 (ENSCCAG00000019148) #31	MYPOP (ENSCCAG00000026331) #32	NOVA2 (ENSCCAG00000037311) #34	CCDC61 (ENSCCAG00000028796) #35	PGLYRP1 (ENSCCAG00000032492) #36	IGFL1 (ENSCCAG00000020676) ##37	HIF3A (ENSCCAG00000028768)
Marmoset	MODERN SPECIES	14	CKM (ENSCJAG00000045755) #7	KLC3 (ENSCJAG00000012757) #8	ERCC2 (ENSCJAG00000012716) #9	PPP1R13L (ENSCJAG00000012693) #10	POLR1G (ENSCJAG00000012689) #11	ERCC1 (ENSCJAG00000038856) #12	FOSB (ENSCJAG00000012636) #13	RTN2 (ENSCJAG00000012569) #14	PPM1N (ENSCJAG00000012560) #15	ENSCJAG00000012536 #16	OPA3 (ENSCJAG00000045305) #17	GPR4 (ENSCJAG00000047762) #18	EML2 (ENSCJAG00000012469) #19	GIPR (ENSCJAG00000012422) #20	ENSCJAG00000019291 #21	QPCTL (ENSCJAG00000082509) #22	FBXO46 (ENSCJAG00000012379) #23	SIX5 (ENSCJAG00000012372) #25	DMPK (ENSCJAG00000012303) #26	DMWD (ENSCJAG00000012286) #27	RSPH6A (ENSCJAG00000053794) #28	SYMPK (ENSCJAG00000012172) #29	FOXA3 (ENSCJAG00000073792) #30	IRF2BP1 (ENSCJAG00000038370) #31	MYPOP (ENSCJAG00000063769) #32	NANOS2 (ENSCJAG00000012141) #33	ENSCJAG00000074719	NOVA2 (ENSCJAG00000012121) #34	CCDC61 (ENSCJAG00000012104) #35	PGLYRP1 (ENSCJAG00000012095) #36	IGFL1 (ENSCJAG00000012086) ##37
Mas night monkey	MODERN SPECIES	1284	CKM (ENSANAG00000029385) #7	ENSANAG00000020750 #8	ERCC2 (ENSANAG00000022694) #9	PPP1R13L (ENSANAG00000023805) #10	POLR1G (ENSANAG00000022477) #11	ERCC1 (ENSANAG00000029523) #12	FOSB (ENSANAG00000035322) #13	RTN2 (ENSANAG00000032309) #14	PPM1N (ENSANAG00000022999) #15	ENSANAG00000034983 #16	OPA3 (ENSANAG00000023653) #17	GPR4 (ENSANAG00000019611) #18	ENSANAG00000029331 #19	GIPR (ENSANAG00000033440) #20	ENSANAG00000019777 ##21	QPCTL (ENSANAG00000035587) #22	FBXO46 (ENSANAG00000019304) #23	MEIOSIN (ENSANAG00000020001) #24	SIX5 (ENSANAG00000029935) #25	DMPK (ENSANAG00000020485) #26	DMWD (ENSANAG00000030434) #27	RSPH6A (ENSANAG00000020023) #28	SYMPK (ENSANAG00000021087) #29	FOXA3 (ENSANAG00000036063) #30	IRF2BP1 (ENSANAG00000019622) #31	MYPOP (ENSANAG00000034331) #32	NOVA2 (ENSANAG00000022520) #34	CCDC61 (ENSANAG00000024615) #35	PGLYRP1 (ENSANAG00000036439) #36	IGFL1 (ENSANAG00000034626) ##37	ENSANAG00000005209
Tarsier	MODERN SPECIES	5896								RTN2 (ENSTSYG00000011843) #14	PPM1N (ENSTSYG00000033134) #15	VASP (ENSTSYG00000036518) #16	OPA3 (ENSTSYG00000026684) #17	GPR4 (ENSTSYG00000025502) #18	EML2 (ENSTSYG00000007846) #19	GIPR (ENSTSYG00000028924) #20	SNRPD2 (ENSTSYG00000011207) #21	QPCTL (ENSTSYG00000025557) #22	MEIOSIN (ENSTSYG00000025912) #24	SIX5 (ENSTSYG00000027214) #25
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.nb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Greater bamboo lemur	MODERN SPECIES	79	CKM (ENSPSMG00000025058) #7	KLC3 (ENSPSMG00000025052) #8	ERCC2 (ENSPSMG00000025033) #9	PPP1R13L (ENSPSMG00000025002) #10	POLR1G (ENSPSMG00000024991) #11	ERCC1 (ENSPSMG00000024982) #12	FOSB (ENSPSMG00000024967) #13	RTN2 (ENSPSMG00000024946) #14	PPM1N (ENSPSMG00000024901) #15	VASP (ENSPSMG00000024889) #16	OPA3 (ENSPSMG00000024888) #17	GPR4 (ENSPSMG00000024886) #18	EML2 (ENSPSMG00000024861) #19	GIPR (ENSPSMG00000024806) #20	ENSPSMG00000024780 #21	QPCTL (ENSPSMG00000024775) #22	FBXO46 (ENSPSMG00000024762) #23	MEIOSIN (ENSPSMG00000024755) #24	SIX5 (ENSPSMG00000024751) #25	DMPK (ENSPSMG00000024718) #26	DMWD (ENSPSMG00000024609) #27	RSPH6A (ENSPSMG00000024602) #28	SYMPK (ENSPSMG00000024583) #29	FOXA3 (ENSPSMG00000024546) #30	IRF2BP1 (ENSPSMG00000024544) #31	ENSPSMG00000024542	NANOS2 (ENSPSMG00000024540) #33	NOVA2 (ENSPSMG00000024538) #34	CCDC61 (ENSPSMG00000024535) #35
Coquerels sifaka	MODERN SPECIES	568	CKM (ENSPCOG00000025111) #7	KLC3 (ENSPCOG00000019370) #8	ERCC2 (ENSPCOG00000016671) #9	PPP1R13L (ENSPCOG00000022581) #10	POLR1G (ENSPCOG00000028780) #11	ERCC1 (ENSPCOG00000028786) #12	FOSB (ENSPCOG00000008886) #13	RTN2 (ENSPCOG00000004285) #14	PPM1N (ENSPCOG00000022242) #15	VASP (ENSPCOG00000013513) #16	OPA3 (ENSPCOG00000017860) #17	GPR4 (ENSPCOG00000000191) #18	EML2 (ENSPCOG00000018079) #19	GIPR (ENSPCOG00000021969) #20	SNRPD2 (ENSPCOG00000028811) #21	QPCTL (ENSPCOG00000018844) #22	FBXO46 (ENSPCOG00000000122) #23	MEIOSIN (ENSPCOG00000016822) #24	SIX5 (ENSPCOG00000013322) #25	DMPK (ENSPCOG00000021802) #26	DMWD (ENSPCOG00000019486) #27	RSPH6A (ENSPCOG00000014359) #28	SYMPK (ENSPCOG00000023740) #29	FOXA3 (ENSPCOG00000022077) #30	IRF2BP1 (ENSPCOG00000007598) #31	MYPOP (ENSPCOG00000020339) #32	NOVA2 (ENSPCOG00000022693) #34	CCDC61 (ENSPCOG00000024920) #35	PGLYRP1 (ENSPCOG00000027266) #36	IGFL1 (ENSPCOG00000013757) ##37	HIF3A (ENSPCOG00000022775)
Mouse lemur	MODERN SPECIES	14	CKM (ENSMICG00000000625) #7	KLC3 (ENSMICG00000000630) #8	ERCC2 (ENSMICG00000000635) #9	PPP1R13L (ENSMICG00000001794) #10	POLR1G (ENSMICG00000031258) #11	ERCC1 (ENSMICG00000001806) #12	FOSB (ENSMICG00000001809) #13	RTN2 (ENSMICG00000003139) #14	PPM1N (ENSMICG00000029291) #15	VASP (ENSMICG00000044750) #16	OPA3 (ENSMICG00000046590) #17	GPR4 (ENSMICG00000046993) #18	EML2 (ENSMICG00000001822) #19	GIPR (ENSMICG00000001830) #20	SNRPD2 (ENSMICG00000031545) #21	QPCTL (ENSMICG00000001842) #22	FBXO46 (ENSMICG00000028138) #23	MEIOSIN (ENSMICG00000036620) #24	SIX5 (ENSMICG00000042264) #25	DMPK (ENSMICG00000001848) #26	ENSMICG00000047465 #27	RSPH6A (ENSMICG00000001866) #28	SYMPK (ENSMICG00000001871) #29	FOXA3 (ENSMICG00000038321) #30	IRF2BP1 (ENSMICG00000001894) #31	MYPOP (ENSMICG00000045279) #32	NOVA2 (ENSMICG00000028720) #34	CCDC61 (ENSMICG00000003511) #35	PGLYRP1 (ENSMICG00000033644) #36	IGFL1 (ENSMICG00000028260) ##37	HIF3A (ENSMICG00000016033)
Bushbaby	MODERN SPECIES	267	CKM (ENSOGAG00000007832) #7	KLC3 (ENSOGAG00000027807) #8	ERCC2 (ENSOGAG00000007834) #9	PPP1R13L (ENSOGAG00000013774) #10	POLR1G (ENSOGAG00000013782) #11	ERCC1 (ENSOGAG00000030471) #12	FOSB (ENSOGAG00000013790) #13	RTN2 (ENSOGAG00000033252) #14	PPM1N (ENSOGAG00000033341) #15	VASP (ENSOGAG00000011276) #16	OPA3 (ENSOGAG00000033310) #17	GPR4 (ENSOGAG00000029132) #18	EML2 (ENSOGAG00000033974) #19	GIPR (ENSOGAG00000012568) #20	SNRPD2 (ENSOGAG00000030128) #21	QPCTL (ENSOGAG00000003952) #22	FBXO46 (ENSOGAG00000033472) #23	SIX5 (ENSOGAG00000013460) #25	DMPK (ENSOGAG00000013463) #26	DMWD (ENSOGAG00000033214) #27	RSPH6A (ENSOGAG00000013480) #28	SYMPK (ENSOGAG00000013483) #29	FOXA3 (ENSOGAG00000030286) #30	IRF2BP1 (ENSOGAG00000030584) #31	MYPOP (ENSOGAG00000013500) #32	NANOS2 (ENSOGAG00000032290) #33	NOVA2 (ENSOGAG00000028973) #34	CCDC61 (ENSOGAG00000007302) #35	PGLYRP1 (ENSOGAG00000007305) #36	ENSOGAG00000032211 #37	HIF3A (ENSOGAG00000008187)
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Tree shrew	MODERN SPECIES	5965														GIPR (ENSTBEG00000001355) #20	SNRPD2 (ENSTBEG00000001752) #21	QPCTL (ENSTBEG00000001949) #22
Glires	ANCESTRAL SPECIES	6	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Lagomorpha	ANCESTRAL SPECIES	178	ENSGT00940000159555	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00450000040362 #11	ENSGT00980000200098	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22
Rabbit	MODERN SPECIES	736		ENSOCUG00000024723	CKM (ENSOCUG00000027154) #7	ERCC2 (ENSOCUG00000025269) #9	ENSOCUG00000025376 #11	ENSOCUG00000024047	FOSB (ENSOCUG00000023019) #13	RTN2 (ENSOCUG00000023342) #14	PPM1N (ENSOCUG00000024100) #15	ENSOCUG00000026899 #16	OPA3 (ENSOCUG00000007949) #17	GPR4 (ENSOCUG00000037302) #18	EML2 (ENSOCUG00000021801) #19	GIPR (ENSOCUG00000011885) #20	SNRPD2 (ENSOCUG00000022402) #21	QPCTL (ENSOCUG00000016066) #22
Pika	MODERN SPECIES	859											VASP (ENSOPRG00000008231) #16	OPA3 (ENSOPRG00000008253) #17	EML2 (ENSOPRG00000008272) #19	GIPR (ENSOPRG00000008298) #20	SNRPD2 (ENSOPRG00000008321) #21	QPCTL (ENSOPRG00000008326) #22
Rodentia	ANCESTRAL SPECIES	8	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Muroidea	ANCESTRAL SPECIES	18	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Cricetidae	ANCESTRAL SPECIES	29	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Cricetinae	ANCESTRAL SPECIES	42	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Chinese hamster chok1gshd	MODERN SPECIES	328	Mark4 (ENSCGRG00001017090)	Ckm (ENSCGRG00001017465) #7	Klc3 (ENSCGRG00001022712) #8	Ercc2 (ENSCGRG00001013953) #9	Ppp1r13l (ENSCGRG00001020832) #10	Polr1g (ENSCGRG00001023584) #11	Ercc1 (ENSCGRG00001000712) #12	Fosb (ENSCGRG00001009723) #13	Rtn2 (ENSCGRG00001023308) #14	Ppm1n (ENSCGRG00001001627) #15	Vasp (ENSCGRG00001008576) #16	Opa3 (ENSCGRG00001016230) #17	Gpr4 (ENSCGRG00001013541) #18	Eml2 (ENSCGRG00001001692) #19	Gipr (ENSCGRG00001000434) #20	Qpctl (ENSCGRG00001000786) #22	Fbxo46 (ENSCGRG00001014313) #23	Meiosin (ENSCGRG00001020518) #24	Six5 (ENSCGRG00001017935) #25	Dmpk (ENSCGRG00001006164) #26	Dmwd (ENSCGRG00001012273) #27	Rsph6a (ENSCGRG00001015748) #28	Sympk (ENSCGRG00001010086) #29	Foxa3 (ENSCGRG00001011296) #30	Irf2bp1 (ENSCGRG00001014712) #31	Mypop (ENSCGRG00001011751) #32	Nanos2 (ENSCGRG00001013726) #33	Nova2 (ENSCGRG00001013374) #34	Pglyrp1 (ENSCGRG00001014568) #36	ENSCGRG00001015639	ENSCGRG00001016889
Golden Hamster	MODERN SPECIES	834	ENSMAUG00000020514	Ckm (ENSMAUG00000009932) #7	Klc3 (ENSMAUG00000017859) #8	Ercc2 (ENSMAUG00000000724) #9	Ppp1r13l (ENSMAUG00000020292) #10	Polr1g (ENSMAUG00000007876) #11	Ercc1 (ENSMAUG00000014855) #12	Fosb (ENSMAUG00000000999) #13	ENSMAUG00000018994 #14	Ppm1n (ENSMAUG00000011353) #15	Vasp (ENSMAUG00000018921) #16	Opa3 (ENSMAUG00000015768) #17	Eml2 (ENSMAUG00000016205) #19	Gipr (ENSMAUG00000021032) #20	Snrpd2 (ENSMAUG00000018849) #21	Qpctl (ENSMAUG00000014498) #22	Fbxo46 (ENSMAUG00000019697) #23	Meiosin (ENSMAUG00000016220) #24	Six5 (ENSMAUG00000017419) #25	ENSMAUG00000009219 #26	Sympk (ENSMAUG00000015657) #29	Rsph6a (ENSMAUG00000016903) #28	Foxa3 (ENSMAUG00000007869) #30	Irf2bp1 (ENSMAUG00000002822) #31	ENSMAUG00000019605	Mypop (ENSMAUG00000018164) #32	Nova2 (ENSMAUG00000014038) #34	ENSMAUG00000003976 #35	Pglyrp1 (ENSMAUG00000009434) #36	ENSMAUG00000014730	ENSMAUG00000014769
Cricetidae_B	ANCESTRAL SPECIES	41	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Prairie vole	MODERN SPECIES	157	Ckm (ENSMOCG00000020442) #7	Klc3 (ENSMOCG00000003970) #8	Ercc2 (ENSMOCG00000013611) #9	Ppp1r13l (ENSMOCG00000001158) #10	Polr1g (ENSMOCG00000013766) #11	Ercc1 (ENSMOCG00000012206) #12	Fosb (ENSMOCG00000001596) #13	ENSMOCG00000018978 #14	Ppm1n (ENSMOCG00000011572) #15	Vasp (ENSMOCG00000001451) #16	Opa3 (ENSMOCG00000013947) #17	Gpr4 (ENSMOCG00000001007) #18	Eml2 (ENSMOCG00000013139) #19	Gipr (ENSMOCG00000015992) #20	Snrpd2 (ENSMOCG00000017080) #21	Qpctl (ENSMOCG00000015780) #22	Fbxo46 (ENSMOCG00000019977) #23	Meiosin (ENSMOCG00000014656) #24	Six5 (ENSMOCG00000004062) #25	ENSMOCG00000013066 #26	Dmwd (ENSMOCG00000017387) #27	Rsph6a (ENSMOCG00000000271) #28	Sympk (ENSMOCG00000008388) #29	Foxa3 (ENSMOCG00000002412) #30	Irf2bp1 (ENSMOCG00000002955) #31	ENSMOCG00000000161	Mypop (ENSMOCG00000015120) #32	Nanos2 (ENSMOCG00000001985) #33	Nova2 (ENSMOCG00000018489) #34	ENSMOCG00000019652 #35	Pglyrp1 (ENSMOCG00000009253) #36
Northern American deer mouse	MODERN SPECIES		ENSPEMG00000019188	Klc3 (ENSPEMG00000014005) #8	Ercc2 (ENSPEMG00000008225) #9	Ppp1r13l (ENSPEMG00000007393) #10	Polr1g (ENSPEMG00000018578) #11	Ercc1 (ENSPEMG00000000638) #12	Fosb (ENSPEMG00000016150) #13	Rtn2 (ENSPEMG00000012056) #14	Ppm1n (ENSPEMG00000014264) #15	Vasp (ENSPEMG00000001352) #16	Opa3 (ENSPEMG00000024608) #17	Gpr4 (ENSPEMG00000000584) #18	Eml2 (ENSPEMG00000008721) #19	Gipr (ENSPEMG00000014106) #20	Snrpd2 (ENSPEMG00000004117) #21	Qpctl (ENSPEMG00000016557) #22	Fbxo46 (ENSPEMG00000012576) #23	Meiosin (ENSPEMG00000011376) #24	Six5 (ENSPEMG00000014887) #25	Dmpk (ENSPEMG00000030626) #26	Dmwd (ENSPEMG00000018276) #27	Rsph6a (ENSPEMG00000009606) #28	Sympk (ENSPEMG00000007564) #29	Foxa3 (ENSPEMG00000016723) #30	Irf2bp1 (ENSPEMG00000009598) #31	Mypop (ENSPEMG00000012458) #32	Nanos2 (ENSPEMG00000014999) #33	ENSPEMG00000030568	Nova2 (ENSPEMG00000025491) #34	Ccdc61 (ENSPEMG00000016005) #35	Pglyrp1 (ENSPEMG00000030075) #36
Murinae	ANCESTRAL SPECIES	19	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Mus	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740.g.b #34	ENSGT00940000161740.g.a #34	ENSGT00940000154133.B #35
Mus_A	ANCESTRAL SPECIES	1	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045.i #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740.g.b #34	ENSGT00940000161740.g.a #34	ENSGT00940000154133.B #35
Mus_B	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045.i #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740.g.b #34	ENSGT00940000161740.g.a #34	ENSGT00940000154133.B #35
Mus_C	ANCESTRAL SPECIES	15	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045.i #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740.g.b #34	ENSGT00940000161740.g.a #34	ENSGT00940000154133.B #35
spretus	MODERN SPECIES	16	Ckm (MGP_SPRETEiJ_G0030373) #7	Klc3 (MGP_SPRETEiJ_G0030372) #8	Ercc2 (MGP_SPRETEiJ_G0030371) #9	Ppp1r13l (MGP_SPRETEiJ_G0030370) #10	Polr1g (MGP_SPRETEiJ_G0030369) #11	Ercc1 (MGP_SPRETEiJ_G0030368) #12	Fosb (MGP_SPRETEiJ_G0030367) #13	Rtn2 (MGP_SPRETEiJ_G0030366) #14	Ppm1n (MGP_SPRETEiJ_G0030365) #15	Vasp (MGP_SPRETEiJ_G0030364) #16	Opa3 (MGP_SPRETEiJ_G0030363) #17	Gpr4 (MGP_SPRETEiJ_G0030362) #18	Eml2 (MGP_SPRETEiJ_G0030361) #19	Gipr (MGP_SPRETEiJ_G0030360) #20	MGP_SPRETEiJ_G0030359 #21	Qpctl (MGP_SPRETEiJ_G0030358) #22	Fbxo46 (MGP_SPRETEiJ_G0030357) #23	Meiosin (MGP_SPRETEiJ_G0030356) #24	Six5 (MGP_SPRETEiJ_G0030355) #25	Dmpk (MGP_SPRETEiJ_G0030354) #26	Dmwd (MGP_SPRETEiJ_G0030353) #27	Rsph6a (MGP_SPRETEiJ_G0030352) #28	MGP_SPRETEiJ_G0030351 #29	Foxa3 (MGP_SPRETEiJ_G0030350) #30	Irf2bp1 (MGP_SPRETEiJ_G0030349) #31	Mypop (MGP_SPRETEiJ_G0030348) #32	Nanos2 (MGP_SPRETEiJ_G0030347) #33	MGP_SPRETEiJ_G0030346 #34	Nova2 (MGP_SPRETEiJ_G0030345) #34	Ccdc61 (MGP_SPRETEiJ_G0030344) #35	Pglyrp1 (MGP_SPRETEiJ_G0030343) #36
Steppe mouse	MODERN SPECIES	2900	Ckm (ENSMSIG00000006180) #7	Klc3 (ENSMSIG00000006063) #8	Ercc2 (ENSMSIG00000005841) #9	Ppp1r13l (ENSMSIG00000005801) #10	Polr1g (ENSMSIG00000005787) #11	Ercc1 (ENSMSIG00000005763) #12	Fosb (ENSMSIG00000005600) #13	Rtn2 (ENSMSIG00000005554) #14	Ppm1n (ENSMSIG00000005528) #15	Vasp (ENSMSIG00000005496) #16	Opa3 (ENSMSIG00000005466) #17	Gpr4 (ENSMSIG00000005462) #18	Eml2 (ENSMSIG00000005175) #19	Gipr (ENSMSIG00000005108) #20	Snrpd2 (ENSMSIG00000005096) #21	Qpctl (ENSMSIG00000005068) #22	Fbxo46 (ENSMSIG00000005049) #23	Meiosin (ENSMSIG00000004995) #24	Six5 (ENSMSIG00000004988) #25	Dmpk (ENSMSIG00000004700) #26	ENSMSIG00000004668 #27	Rsph6a (ENSMSIG00000004641) #28	Sympk (ENSMSIG00000004528) #29	Foxa3 (ENSMSIG00000004505) #30	Irf2bp1 (ENSMSIG00000004499) #31	ENSMSIG00000004494	Mypop (ENSMSIG00000004475) #32	Nanos2 (ENSMSIG00000004468) #33	ENSMSIG00000004448 #34	ENSMSIG00000004443 #34
Mouse	MODERN SPECIES	16	Ckm (ENSMUSG00000030399) #7	Klc3 (ENSMUSG00000040714) #8	Ercc2 (ENSMUSG00000030400) #9	Ppp1r13l (ENSMUSG00000040734) #10	Polr1g (ENSMUSG00000047649) #11	Ercc1 (ENSMUSG00000003549) #12	Fosb (ENSMUSG00000003545) #13	Rtn2 (ENSMUSG00000030401) #14	Ppm1n (ENSMUSG00000030402) #15	Vasp (ENSMUSG00000030403) #16	Opa3 (ENSMUSG00000052214) #17	Gpr4 (ENSMUSG00000044317) #18	Eml2 (ENSMUSG00000040811) #19	Gipr (ENSMUSG00000030406) #20	Snrpd2 (ENSMUSG00000040824) #21	Qpctl (ENSMUSG00000030407) #22	Fbxo46 (ENSMUSG00000050428) #23	Meiosin (ENSMUSG00000085601) #24	Six5 (ENSMUSG00000040841) #25	Dmpk (ENSMUSG00000030409) #26	Dmwd (ENSMUSG00000030410) #27	Rsph6a (ENSMUSG00000040866) #28	Sympk (ENSMUSG00000023118) #29	Foxa3 (ENSMUSG00000040891) #30	Irf2bp1 (ENSMUSG00000044030) #31	Mypop (ENSMUSG00000048481) #32	Nanos2 (ENSMUSG00000051965) #33	Nova2 (ENSMUSG00000030411) #34	Ccdc61 (ENSMUSG00000074358) #35	Pglyrp1 (ENSMUSG00000030413) #36	Mill2 (ENSMUSG00000040987)
Ryukyu mouse	MODERN SPECIES	16	Ckm (MGP_CAROLIEiJ_G0029289) #7	Klc3 (MGP_CAROLIEiJ_G0029288) #8	Ercc2 (MGP_CAROLIEiJ_G0029287) #9	Ppp1r13l (MGP_CAROLIEiJ_G0029286) #10	Polr1g (MGP_CAROLIEiJ_G0029285) #11	Ercc1 (MGP_CAROLIEiJ_G0029284) #12	Fosb (MGP_CAROLIEiJ_G0029283) #13	Rtn2 (MGP_CAROLIEiJ_G0029282) #14	Ppm1n (MGP_CAROLIEiJ_G0029281) #15	Vasp (MGP_CAROLIEiJ_G0029280) #16	Opa3 (MGP_CAROLIEiJ_G0029279) #17	Gpr4 (MGP_CAROLIEiJ_G0029278) #18	Eml2 (MGP_CAROLIEiJ_G0029277) #19	Gipr (MGP_CAROLIEiJ_G0029276) #20	Snrpd2 (MGP_CAROLIEiJ_G0029275) #21	Qpctl (MGP_CAROLIEiJ_G0029274) #22	Fbxo46 (MGP_CAROLIEiJ_G0029273) #23	Meiosin (MGP_CAROLIEiJ_G0029272) #24	Six5 (MGP_CAROLIEiJ_G0029271) #25	Dmpk (MGP_CAROLIEiJ_G0029270) #26	Dmwd (MGP_CAROLIEiJ_G0029269) #27	Rsph6a (MGP_CAROLIEiJ_G0029268) #28	Sympk (MGP_CAROLIEiJ_G0029267) #29	Foxa3 (MGP_CAROLIEiJ_G0029266) #30	Irf2bp1 (MGP_CAROLIEiJ_G0029265) #31	Mypop (MGP_CAROLIEiJ_G0029264) #32	Nanos2 (MGP_CAROLIEiJ_G0029263) #33	MGP_CAROLIEiJ_G0029261 #34	MGP_CAROLIEiJ_G0029262 #34	Ccdc61 (MGP_CAROLIEiJ_G0029260) #35	Pglyrp1 (MGP_CAROLIEiJ_G0029259) #36
Shrew mouse	MODERN SPECIES	10	MGP_PahariEiJ_G0021150	Ckm (MGP_PahariEiJ_G0021149) #7	Klc3 (MGP_PahariEiJ_G0021148) #8	Ercc2 (MGP_PahariEiJ_G0021147) #9	Ppp1r13l (MGP_PahariEiJ_G0021146) #10	Ercc1 (MGP_PahariEiJ_G0021144) #12	Fosb (MGP_PahariEiJ_G0021143) #13	Rtn2 (MGP_PahariEiJ_G0021142) #14	Ppm1n (MGP_PahariEiJ_G0021141) #15	Vasp (MGP_PahariEiJ_G0021140) #16	Opa3 (MGP_PahariEiJ_G0021139) #17	Gpr4 (MGP_PahariEiJ_G0021138) #18	Eml2 (MGP_PahariEiJ_G0021137) #19	Gipr (MGP_PahariEiJ_G0021136) #20	Snrpd2 (MGP_PahariEiJ_G0021135) #21	Qpctl (MGP_PahariEiJ_G0021134) #22	Fbxo46 (MGP_PahariEiJ_G0021133) #23	Meiosin (MGP_PahariEiJ_G0021132) #24	Six5 (MGP_PahariEiJ_G0021131) #25	Dmpk (MGP_PahariEiJ_G0021130) #26	Dmwd (MGP_PahariEiJ_G0021129) #27	Rsph6a (MGP_PahariEiJ_G0021128) #28	Sympk (MGP_PahariEiJ_G0021127) #29	Foxa3 (MGP_PahariEiJ_G0021126) #30	Irf2bp1 (MGP_PahariEiJ_G0021125) #31	Mypop (MGP_PahariEiJ_G0021124) #32	Nanos2 (MGP_PahariEiJ_G0021123) #33	MGP_PahariEiJ_G0021122 #34	Nova2 (MGP_PahariEiJ_G0021121) #34	Ccdc61 (MGP_PahariEiJ_G0021120) #35	Pglyrp1 (MGP_PahariEiJ_G0021119) #36
Rat	MODERN SPECIES		Klc3 (ENSRNOG00000018101) #8	Ercc2 (ENSRNOG00000017753) #9	Ppp1r13l (ENSRNOG00000025350) #10	Polr1g (ENSRNOG00000016825) #11	Ercc1 (ENSRNOG00000017839) #12	Fosb (ENSRNOG00000046667) #13	Rtn2 (ENSRNOG00000016603) #14	Ppm1n (ENSRNOG00000058133) #15	Vasp (ENSRNOG00000016367) #16	Opa3 (ENSRNOG00000064373) #17	Opa3 (ENSRNOG00000025890)	Gpr4 (ENSRNOG00000016362) #18	Eml2 (ENSRNOG00000030127) #19	Gipr (ENSRNOG00000015860) #20	Snrpd2 (ENSRNOG00000015844) #21	Qpctl (ENSRNOG00000015413) #22	Fbxo46 (ENSRNOG00000008815) #23	Meiosin (ENSRNOG00000067421) #24	Six5 (ENSRNOG00000060146) #25	Dmpk (ENSRNOG00000015085) #26	Dmwd (ENSRNOG00000014984) #27	Rsph6a (ENSRNOG00000061526) #28	Sympk (ENSRNOG00000014353) #29	Foxa3 (ENSRNOG00000014256) #30	Irf2bp1 (ENSRNOG00000014252) #31	AC110846.1 (ENSRNOG00000038087)	Mypop (ENSRNOG00000014132) #32	Nanos2 (ENSRNOG00000038088) #33	Nova2 (ENSRNOG00000013847) #34	Ccdc61 (ENSRNOG00000013767) #35	Pglyrp1 (ENSRNOG00000013395) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1616	Mark4 (ENSNGAG00000012653)	Ckm (ENSNGAG00000000066) #7	Klc3 (ENSNGAG00000007710) #8	Ercc2 (ENSNGAG00000017688) #9	Ppp1r13l (ENSNGAG00000000621) #10	Polr1g (ENSNGAG00000015313) #11	Ercc1 (ENSNGAG00000018219) #12	Fosb (ENSNGAG00000020712) #13	Rtn2 (ENSNGAG00000001176) #14	Vasp (ENSNGAG00000012981) #16	Opa3 (ENSNGAG00000015660) #17	Gpr4 (ENSNGAG00000009194) #18	Eml2 (ENSNGAG00000016674) #19	Gipr (ENSNGAG00000014088) #20	ENSNGAG00000010411 #21	Qpctl (ENSNGAG00000012368) #22	Fbxo46 (ENSNGAG00000017717) #23	Meiosin (ENSNGAG00000006560) #24	Six5 (ENSNGAG00000010611) #25	ENSNGAG00000013526 #26	Dmwd (ENSNGAG00000019523) #27	Rsph6a (ENSNGAG00000020845) #28	Sympk (ENSNGAG00000000820) #29	Foxa3 (ENSNGAG00000018714) #30	Irf2bp1 (ENSNGAG00000016131) #31	Mypop (ENSNGAG00000010823) #32	Nova2 (ENSNGAG00000014104) #34	ENSNGAG00000015060 #35	Pglyrp1 (ENSNGAG00000012535) #36	ENSNGAG00000016192
Lesser Egyptian jerboa	MODERN SPECIES	277															Snrpd2 (ENSJJAG00000002622) #21	Qpctl (ENSJJAG00000002781) #22	Fbxo46 (ENSJJAG00000011631) #23	ENSJJAG00000003426 #24	Six5 (ENSJJAG00000003876) #25	ENSJJAG00000004112 #26	Dmwd (ENSJJAG00000004567) #27	Sympk (ENSJJAG00000006633) #29	Foxa3 (ENSJJAG00000006780) #30	Irf2bp1 (ENSJJAG00000011679) #31	Mypop (ENSJJAG00000007992) #32	Nova2 (ENSJJAG00000000944) #34
Kangaroo rat	MODERN SPECIES	475	Mark4 (ENSDORG00000013282)	ENSDORG00000023785	Ckm (ENSDORG00000013288) #7	Klc3 (ENSDORG00000008004) #8	Ercc2 (ENSDORG00000008002) #9	Ppp1r13l (ENSDORG00000008001) #10	ENSDORG00000027052 #11	Ercc1 (ENSDORG00000007999) #12	Fosb (ENSDORG00000008112) #13	Rtn2 (ENSDORG00000008114) #14	Ppm1n (ENSDORG00000008119) #15	Vasp (ENSDORG00000008121) #16	Opa3 (ENSDORG00000024215) #17	Eml2 (ENSDORG00000008122) #19	Gipr (ENSDORG00000001717) #20	Qpctl (ENSDORG00000001733) #22	Fbxo46 (ENSDORG00000029689) #23	Six5 (ENSDORG00000026570) #25	Dmpk (ENSDORG00000013775) #26	Rsph6a (ENSDORG00000013782) #28	Dmwd (ENSDORG00000013780) #27	ENSDORG00000007530 #29	Foxa3 (ENSDORG00000023140) #30	Irf2bp1 (ENSDORG00000015094) #31	Mypop (ENSDORG00000015093) #32	Nova2 (ENSDORG00000026568) #34	Ccdc61 (ENSDORG00000010042) #35	Pglyrp1 (ENSDORG00000027993) #36	Hif3a (ENSDORG00000004664)	Ppp5c (ENSDORG00000004665)	ENSDORG00000023802
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.C ##37
Guinea pig	MODERN SPECIES	80	ENSCPOG00000039314	KLC3 (ENSCPOG00000015599) #8	ERCC2 (ENSCPOG00000015600) #9	PPP1R13L (ENSCPOG00000015602) #10	ENSCPOG00000036376	POLR1G (ENSCPOG00000033293) #11	ERCC1 (ENSCPOG00000015606) #12	FOSB (ENSCPOG00000015608) #13	RTN2 (ENSCPOG00000011382) #14	PPM1N (ENSCPOG00000034457) #15	VASP (ENSCPOG00000010236) #16	OPA3 (ENSCPOG00000035437) #17	EML2 (ENSCPOG00000013465) #19	GIPR (ENSCPOG00000002438) #20	ENSCPOG00000035154 #21	QPCTL (ENSCPOG00000019359) #22	ENSCPOG00000022016	FBXO46 (ENSCPOG00000021847) #23	MEIOSIN (ENSCPOG00000031479) #24	SIX5 (ENSCPOG00000014282) #25	DMPK (ENSCPOG00000015082) #26	DMWD (ENSCPOG00000037744) #27	RSPH6A (ENSCPOG00000023899) #28	SYMPK (ENSCPOG00000010434) #29	FOXA3 (ENSCPOG00000024661) #30	MYPOP (ENSCPOG00000012168) #32	NANOS2 (ENSCPOG00000014969) #33	ENSCPOG00000020582 #34	CCDC61 (ENSCPOG00000000061) #35	PGLYRP1 (ENSCPOG00000032784) #36	ENSCPOG00000024181 ##37
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00940000161745
Long-tailed chinchilla	MODERN SPECIES	281								RTN2 (ENSCLAG00000001554) #14	PPM1N (ENSCLAG00000001615) #15	VASP (ENSCLAG00000001737) #16	OPA3 (ENSCLAG00000000726) #17	GPR4 (ENSCLAG00000017535) #18	EML2 (ENSCLAG00000000732) #19	GIPR (ENSCLAG00000001135) #20	SNRPD2 (ENSCLAG00000000931) #21	QPCTL (ENSCLAG00000000941) #22	FBXO46 (ENSCLAG00000001009) #23	MEIOSIN (ENSCLAG00000000408) #24	SIX5 (ENSCLAG00000000557) #25	DMPK (ENSCLAG00000000761) #26	DMWD (ENSCLAG00000002306) #27	RSPH6A (ENSCLAG00000002444) #28	SYMPK (ENSCLAG00000001206) #29	FOXA3 (ENSCLAG00000001661) #30	IRF2BP1 (ENSCLAG00000001668) #31	MYPOP (ENSCLAG00000001704) #32	NANOS2 (ENSCLAG00000001832) #33	ENSCLAG00000000991 #34	ENSCLAG00000001044 #35	PGLYRP1 (ENSCLAG00000001072) #36	HIF3A (ENSCLAG00000001139)
Degu	MODERN SPECIES	238	CKM (ENSODEG00000008279) #7	KLC3 (ENSODEG00000009706) #8	ERCC2 (ENSODEG00000008340) #9	PPP1R13L (ENSODEG00000008375) #10	POLR1G (ENSODEG00000007587) #11	ERCC1 (ENSODEG00000007322) #12	FOSB (ENSODEG00000009394) #13	RTN2 (ENSODEG00000007986) #14	PPM1N (ENSODEG00000009338) #15	VASP (ENSODEG00000007915) #16	OPA3 (ENSODEG00000009423) #17	GPR4 (ENSODEG00000019587) #18	EML2 (ENSODEG00000007963) #19	GIPR (ENSODEG00000010030) #20	ENSODEG00000008857 #21	QPCTL (ENSODEG00000012513) #22	FBXO46 (ENSODEG00000019705) #23	ENSODEG00000008118 #24	SIX5 (ENSODEG00000007948) #25	DMPK (ENSODEG00000008697) #26	DMWD (ENSODEG00000007827) #27	RSPH6A (ENSODEG00000006796) #28	ENSODEG00000019416	SYMPK (ENSODEG00000007519) #29	FOXA3 (ENSODEG00000007265) #30	IRF2BP1 (ENSODEG00000019485) #31	MYPOP (ENSODEG00000006759) #32	NOVA2 (ENSODEG00000008485) #34	CCDC61 (ENSODEG00000007872) #35	PGLYRP1 (ENSODEG00000006980) #36	HIF3A (ENSODEG00000007136)
Naked mole-rat female	MODERN SPECIES	21	ERCC2 (ENSHGLG00000018685) #9	PPP1R13L (ENSHGLG00000002359) #10	POLR1G (ENSHGLG00000002795) #11	ERCC1 (ENSHGLG00000003045) #12	FOSB (ENSHGLG00000004044) #13	RTN2 (ENSHGLG00000002943) #14	ENSHGLG00000042028 #15	ENSHGLG00000033452 #13	ENSHGLG00000041051 #15	VASP (ENSHGLG00000018306) #16	OPA3 (ENSHGLG00000016016) #17	GPR4 (ENSHGLG00000036046) #18	EML2 (ENSHGLG00000018598) #19	GIPR (ENSHGLG00000015458) #20	ENSHGLG00000015364 #21	QPCTL (ENSHGLG00000009596) #22	FBXO46 (ENSHGLG00000046481) #23	MEIOSIN (ENSHGLG00000005115) #24	ENSHGLG00000039927 #25	ENSHGLG00000036477	DMPK (ENSHGLG00000006955) #26	DMWD (ENSHGLG00000005355) #27	RSPH6A (ENSHGLG00000009028) #28	SYMPK (ENSHGLG00000005228) #29	FOXA3 (ENSHGLG00000019353) #30	IRF2BP1 (ENSHGLG00000021426) #31	MYPOP (ENSHGLG00000017201) #32	ENSHGLG00000049227	NANOS2 (ENSHGLG00000038379) #33	NOVA2 (ENSHGLG00000016103) #34	CCDC61 (ENSHGLG00000016189) #35
Sciuridae	ANCESTRAL SPECIES	5	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C.t #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Marmotini	ANCESTRAL SPECIES	7	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C.t #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Marmotini_b	ANCESTRAL SPECIES	49	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C.t #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.qb #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Squirrel	MODERN SPECIES	306	CKM (ENSSTOG00000011537) #7	KLC3 (ENSSTOG00000020494) #8	ERCC2 (ENSSTOG00000001106) #9	PPP1R13L (ENSSTOG00000001130) #10	POLR1G (ENSSTOG00000002799) #11	ERCC1 (ENSSTOG00000002805) #12	FOSB (ENSSTOG00000028949) #13	RTN2 (ENSSTOG00000002816) #14	PPM1N (ENSSTOG00000002827) #15	VASP (ENSSTOG00000027705) #16	OPA3 (ENSSTOG00000029170) #17	GPR4 (ENSSTOG00000022015) #18	EML2 (ENSSTOG00000013316) #19	GIPR (ENSSTOG00000028727) #20	SNRPD2 (ENSSTOG00000024377) #21	QPCTL (ENSSTOG00000013895) #22	FBXO46 (ENSSTOG00000023556) #23	SIX5 (ENSSTOG00000028295) #25	DMPK (ENSSTOG00000001508) #26	DMWD (ENSSTOG00000006139) #27	RSPH6A (ENSSTOG00000001528) #28	SYMPK (ENSSTOG00000001534) #29	FOXA3 (ENSSTOG00000027457) #30	IRF2BP1 (ENSSTOG00000028673) #31	NANOS2 (ENSSTOG00000021724) #33	NOVA2 (ENSSTOG00000022126) #34	CCDC61 (ENSSTOG00000007497) #35	PGLYRP1 (ENSSTOG00000020188) #36	ENSSTOG00000031132
Arctic ground squirrel	MODERN SPECIES	297	CKM (ENSUPAG00010021720) #7	KLC3 (ENSUPAG00010021708) #8	ERCC2 (ENSUPAG00010021698) #9	PPP1R13L (ENSUPAG00010021693) #10	POLR1G (ENSUPAG00010021691) #11	ERCC1 (ENSUPAG00010021686) #12	FOSB (ENSUPAG00010021666) #13	RTN2 (ENSUPAG00010021664) #14	PPM1N (ENSUPAG00010021657) #15	VASP (ENSUPAG00010021647) #16	OPA3 (ENSUPAG00010021642) #17	GPR4 (ENSUPAG00010021640) #18	EML2 (ENSUPAG00010021623) #19	GIPR (ENSUPAG00010021609) #20	SNRPD2 (ENSUPAG00010021605) #21	QPCTL (ENSUPAG00010021602) #22	FBXO46 (ENSUPAG00010021600) #23	MEIOSIN (ENSUPAG00010021596) #24	SIX5 (ENSUPAG00010021595) #25	DMPK (ENSUPAG00010021540) #26	DMWD (ENSUPAG00010021530) #27	RSPH6A (ENSUPAG00010021524) #28	SYMPK (ENSUPAG00010021507) #29	FOXA3 (ENSUPAG00010021496) #30	IRF2BP1 (ENSUPAG00010021494) #31	MYPOP (ENSUPAG00010021489) #32	ENSUPAG00010021483	ENSUPAG00010021480 #33	NOVA2 (ENSUPAG00010021477) #34	CCDC61 (ENSUPAG00010021470) #35	PGLYRP1 (ENSUPAG00010021468) #36
Alpin marmot	MODERN SPECIES	45	CKM (ENSMMMG00000014494) #7	KLC3 (ENSMMMG00000014476) #8	ERCC2 (ENSMMMG00000014338) #9	ENSMMMG00000014331 #10	POLR1G (ENSMMMG00000014326) #11	ERCC1 (ENSMMMG00000014315) #12	FOSB (ENSMMMG00000014298) #13	RTN2 (ENSMMMG00000014268) #14	ENSMMMG00000014265 #15	VASP (ENSMMMG00000014235) #16	OPA3 (ENSMMMG00000014232) #17	GPR4 (ENSMMMG00000014230) #18	EML2 (ENSMMMG00000014164) #19	GIPR (ENSMMMG00000014147) #20	ENSMMMG00000014144 #21	QPCTL (ENSMMMG00000014131) #22	FBXO46 (ENSMMMG00000014127) #23	MEIOSIN (ENSMMMG00000014100) #24	ENSMMMG00000014098 #25	DMPK (ENSMMMG00000013984) #26	RSPH6A (ENSMMMG00000013966) #28	SYMPK (ENSMMMG00000013938) #29	FOXA3 (ENSMMMG00000013927) #30	IRF2BP1 (ENSMMMG00000013923) #31	MYPOP (ENSMMMG00000013910) #32	NOVA2 (ENSMMMG00000013905) #34	CCDC61 (ENSMMMG00000013890) #35	PGLYRP1 (ENSMMMG00000013886) #36	NANOS2 (ENSMMMG00000013883) #33	ENSMMMG00000013880	ENSMMMG00000013872 #37
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005021426	KLC3 (ENSSVLG00005021449) #8	ERCC2 (ENSSVLG00005021679) #9	PPP1R13L (ENSSVLG00005021997) #10	POLR1G (ENSSVLG00005022037) #11	ERCC1 (ENSSVLG00005022100) #12	FOSB (ENSSVLG00005022289) #13	RTN2 (ENSSVLG00005022524) #14	PPM1N (ENSSVLG00005022665) #15	VASP (ENSSVLG00005022815) #16	OPA3 (ENSSVLG00005022913) #17	GPR4 (ENSSVLG00005022943) #18	EML2 (ENSSVLG00005023025) #19	GIPR (ENSSVLG00005023358) #20	ENSSVLG00005023631 #21	QPCTL (ENSSVLG00005023664) #22	FBXO46 (ENSSVLG00005023711) #23	MEIOSIN (ENSSVLG00005023736) #24	SIX5 (ENSSVLG00005023801) #25	DMPK (ENSSVLG00005023879) #26	ENSSVLG00005024059 #27	RSPH6A (ENSSVLG00005024118) #28	SYMPK (ENSSVLG00005024212) #29	FOXA3 (ENSSVLG00005024238) #30	IRF2BP1 (ENSSVLG00005024265) #31	MYPOP (ENSSVLG00005024286) #32	NANOS2 (ENSSVLG00005024317) #33	ENSSVLG00005024334	NOVA2 (ENSSVLG00005024343) #34	CCDC61 (ENSSVLG00005024368) #35	PGLYRP1 (ENSSVLG00005024391) #36
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396	ENSGT00940000161006 #36
Eulipotyphla	ANCESTRAL SPECIES	855														ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22
Common shrew	MODERN SPECIES	1830														GIPR (ENSSARG00000009137) #20	SNRPD2 (ENSSARG00000009167) #21	QPCTL (ENSSARG00000009178) #22
Hedgehog	MODERN SPECIES	2495																ENSEEUG00000006599 #22
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Suina	ANCESTRAL SPECIES	2	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Chacoan peccary	MODERN SPECIES	799	CKM (ENSCWAG00000007339) #7	KLC3 (ENSCWAG00000007378) #8	ERCC2 (ENSCWAG00000007442) #9	PPP1R13L (ENSCWAG00000007629) #10	POLR1G (ENSCWAG00000006042) #11	ERCC1 (ENSCWAG00000006073) #12	FOSB (ENSCWAG00000006321) #13	RTN2 (ENSCWAG00000006684) #14	PPM1N (ENSCWAG00000006758) #15	VASP (ENSCWAG00000006847) #16	OPA3 (ENSCWAG00000006875) #17	GPR4 (ENSCWAG00000006910) #18	EML2 (ENSCWAG00000006972) #19	GIPR (ENSCWAG00000007383) #20	SNRPD2 (ENSCWAG00000007655) #21	QPCTL (ENSCWAG00000007680) #22	FBXO46 (ENSCWAG00000007733) #23	SIX5 (ENSCWAG00000007894) #25	DMPK (ENSCWAG00000008009) #26	DMWD (ENSCWAG00000008169) #27	RSPH6A (ENSCWAG00000008233) #28	SYMPK (ENSCWAG00000008306) #29	FOXA3 (ENSCWAG00000008358) #30	IRF2BP1 (ENSCWAG00000008392) #31	MYPOP (ENSCWAG00000008415) #32	ENSCWAG00000008443	NANOS2 (ENSCWAG00000008461) #33	NOVA2 (ENSCWAG00000008485) #34	CCDC61 (ENSCWAG00000008530) #35	PGLYRP1 (ENSCWAG00000008579) #36	HIF3A (ENSCWAG00000008758)
Pig	MODERN SPECIES	14	CKM (ENSSSCG00000036132) #7	KLC3 (ENSSSCG00000039864) #8	ERCC2 (ENSSSCG00000039929) #9	PPP1R13L (ENSSSCG00000036542) #10	POLR1G (ENSSSCG00000020754) #11	ERCC1 (ENSSSCG00000055289) #12	FOSB (ENSSSCG00000031616) #13	RTN2 (ENSSSCG00000036870) #14	PPM1N (ENSSSCG00000037001) #15	VASP (ENSSSCG00000036317) #16	OPA3 (ENSSSCG00000058475) #17	GPR4 (ENSSSCG00000037184) #18	EML2 (ENSSSCG00000038229) #19	GIPR (ENSSSCG00000021053) #20	SNRPD2 (ENSSSCG00000033500) #21	QPCTL (ENSSSCG00000032819) #22	FBXO46 (ENSSSCG00000038367) #23	MEIOSIN (ENSSSCG00000039916) #24	SIX5 (ENSSSCG00000035791) #25	DMPK (ENSSSCG00000038969) #26	DMWD (ENSSSCG00000038738) #27	RSPH6A (ENSSSCG00000040714) #28	SYMPK (ENSSSCG00000003093) #29	FOXA3 (ENSSSCG00000003092) #30	MYPOP (ENSSSCG00000038739) #32	ENSSSCG00000035767	NANOS2 (ENSSSCG00000003096) #33	NOVA2 (ENSSSCG00000035029) #34	CCDC61 (ENSSSCG00000003100) #35	PGLYRP1 (ENSSSCG00000038688) #36	ENSSSCG00000046511
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Cetacea	ANCESTRAL SPECIES	6	ENSGT01030000235762	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Odontoceti	ANCESTRAL SPECIES	6	ENSGT01030000235762	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT01030000235762	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT01030000235762	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161745
Monodontidae	ANCESTRAL SPECIES	3	ENSGT01030000235762	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161745
Narwhal	MODERN SPECIES	296	ENSMMNG00015006648	KLC3 (ENSMMNG00015006659) #8	ERCC2 (ENSMMNG00015006706) #9	PPP1R13L (ENSMMNG00015006754) #10	POLR1G (ENSMMNG00015006785) #11	ERCC1 (ENSMMNG00015006840) #12	FOSB (ENSMMNG00015006909) #13	RTN2 (ENSMMNG00015006960) #14	PPM1N (ENSMMNG00015007023) #15	VASP (ENSMMNG00015007042) #16	OPA3 (ENSMMNG00015007066) #17	GPR4 (ENSMMNG00015007074) #18	EML2 (ENSMMNG00015007133) #19	GIPR (ENSMMNG00015007342) #20	ENSMMNG00015007488 #21	QPCTL (ENSMMNG00015007522) #22	FBXO46 (ENSMMNG00015007550) #23	MEIOSIN (ENSMMNG00015007567) #24	SIX5 (ENSMMNG00015007599) #25	DMPK (ENSMMNG00015007633) #26	DMWD (ENSMMNG00015007676) #27	RSPH6A (ENSMMNG00015007710) #28	SYMPK (ENSMMNG00015007752) #29	FOXA3 (ENSMMNG00015007790) #30	IRF2BP1 (ENSMMNG00015007799) #31	MYPOP (ENSMMNG00015007811) #32	ENSMMNG00015007819	NANOS2 (ENSMMNG00015007835) #33	NOVA2 (ENSMMNG00015007847) #34	CCDC61 (ENSMMNG00015007871) #35	HIF3A (ENSMMNG00015007921)
Beluga whale	MODERN SPECIES	14	CKM (ENSDLEG00000000888) #7	ENSDLEG00000000880	KLC3 (ENSDLEG00000000859) #8	ERCC2 (ENSDLEG00000000789) #9	PPP1R13L (ENSDLEG00000000687) #10	CD3EAP (ENSDLEG00000000625) #11	ERCC1 (ENSDLEG00000000601) #12	FOSB (ENSDLEG00000000573) #13	RTN2 (ENSDLEG00000000550) #14	ENSDLEG00000000541 #15	VASP (ENSDLEG00000000495) #16	OPA3 (ENSDLEG00000000472) #17	EML2 (ENSDLEG00000000275) #19	GIPR (ENSDLEG00000000221) #20	SNRPD2 (ENSDLEG00000000188) #21	QPCTL (ENSDLEG00000000148) #22	FBXO46 (ENSDLEG00000000130) #23	SIX5 (ENSDLEG00000000119) #25	DMPK (ENSDLEG00000000090) #26	DMWD (ENSDLEG00000000077) #27	RSPH6A (ENSDLEG00000004133) #28	SYMPK (ENSDLEG00000004122) #29	FOXA3 (ENSDLEG00000004115) #30	IRF2BP1 (ENSDLEG00000004112) #31	MYPOP (ENSDLEG00000004110) #32	ENSDLEG00000004104	NANOS2 (ENSDLEG00000004101) #33	NOVA2 (ENSDLEG00000004096) #34	CCDC61 (ENSDLEG00000004090) #35	HIF3A (ENSDLEG00000004077)	PPP5C (ENSDLEG00000004066)
Vaquita	MODERN SPECIES	10	ENSPSNG00000009068	KLC3 (ENSPSNG00000008893) #8	ERCC2 (ENSPSNG00000008714) #9	PPP1R13L (ENSPSNG00000008669) #10	POLR1G (ENSPSNG00000008629) #11	ERCC1 (ENSPSNG00000008412) #12	FOSB (ENSPSNG00000008236) #13	RTN2 (ENSPSNG00000008107) #14	PPM1N (ENSPSNG00000008040) #15	VASP (ENSPSNG00000008004) #16	OPA3 (ENSPSNG00000007984) #17	GPR4 (ENSPSNG00000007964) #18	EML2 (ENSPSNG00000007601) #19	GIPR (ENSPSNG00000007181) #20	ENSPSNG00000007055 #21	QPCTL (ENSPSNG00000006987) #22	FBXO46 (ENSPSNG00000006942) #23	SIX5 (ENSPSNG00000006825) #25	DMWD (ENSPSNG00000006737) #27	ENSPSNG00000006688 #28	SYMPK (ENSPSNG00000006567) #29	FOXA3 (ENSPSNG00000006380) #30	IRF2BP1 (ENSPSNG00000006350) #31	ENSPSNG00000006334	MYPOP (ENSPSNG00000006305) #32	NANOS2 (ENSPSNG00000006285) #33	NOVA2 (ENSPSNG00000006243) #34	CCDC61 (ENSPSNG00000006217) #35	HIF3A (ENSPSNG00000006147)	PPP5C (ENSPSNG00000006084)	PNMA8A (ENSPSNG00000006045)
Dolphin	MODERN SPECIES	2108												GPR4 (ENSTTRG00000014282) #18	EML2 (ENSTTRG00000014285) #19	GIPR (ENSTTRG00000014291) #20	SNRPD2 (ENSTTRG00000014299) #21	QPCTL (ENSTTRG00000014300) #22	SIX5 (ENSTTRG00000014303) #25	DMPK (ENSTTRG00000014304) #26	DMWD (ENSTTRG00000014307) #27	RSPH6A (ENSTTRG00000014308) #28	SYMPK (ENSTTRG00000014311) #29	FOXA3 (ENSTTRG00000014312) #30	IRF2BP1 (ENSTTRG00000014313) #31	MYPOP (ENSTTRG00000014314) #32	NANOS2 (ENSTTRG00000014315) #33
Sperm whale	MODERN SPECIES	24												OPA3 (ENSPCTG00005014977) #17	EML2 (ENSPCTG00005014306) #19	GIPR (ENSPCTG00005013545) #20	SNRPD2 (ENSPCTG00005013438) #21	QPCTL (ENSPCTG00005013345) #22	FBXO46 (ENSPCTG00005013309) #23	MEIOSIN (ENSPCTG00005013085) #24	SIX5 (ENSPCTG00005013002) #25	DMPK (ENSPCTG00005012889) #26	DMWD (ENSPCTG00005012784) #27	RSPH6A (ENSPCTG00005012600) #28	SYMPK (ENSPCTG00005012494) #29	FOXA3 (ENSPCTG00005022331) #30	IRF2BP1 (ENSPCTG00005022328) #31	MYPOP (ENSPCTG00005022327) #32	NANOS2 (ENSPCTG00005022323) #33
Blue whale	MODERN SPECIES	10	ENSBMSG00010016434	KLC3 (ENSBMSG00010016396) #8	ERCC2 (ENSBMSG00010016132) #9	PPP1R13L (ENSBMSG00010016007) #10	POLR1G (ENSBMSG00010015986) #11	ERCC1 (ENSBMSG00010015851) #12	FOSB (ENSBMSG00010015683) #13	RTN2 (ENSBMSG00010015497) #14	PPM1N (ENSBMSG00010015387) #15	VASP (ENSBMSG00010015338) #16	OPA3 (ENSBMSG00010015309) #17	GPR4 (ENSBMSG00010015297) #18	EML2 (ENSBMSG00010015025) #19	GIPR (ENSBMSG00010014763) #20	SNRPD2 (ENSBMSG00010014687) #21	QPCTL (ENSBMSG00010014644) #22	FBXO46 (ENSBMSG00010014606) #23	MEIOSIN (ENSBMSG00010014548) #24	SIX5 (ENSBMSG00010014523) #25	DMPK (ENSBMSG00010014458) #26	DMWD (ENSBMSG00010014405) #27	ENSBMSG00010014352 #28	SYMPK (ENSBMSG00010014199) #29	FOXA3 (ENSBMSG00010014125) #30	IRF2BP1 (ENSBMSG00010014111) #31	ENSBMSG00010014093	MYPOP (ENSBMSG00010014070) #32	NANOS2 (ENSBMSG00010014044) #33	NOVA2 (ENSBMSG00010021172) #34	CCDC61 (ENSBMSG00010021160) #35	PGLYRP1 (ENSBMSG00010021143) #36
Pecora	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Yarkand deer	MODERN SPECIES	27	KLC3 (ENSCHYG00000003518) #8	ERCC2 (ENSCHYG00000003567) #9	PPP1R13L (ENSCHYG00000003620) #10	POLR1G (ENSCHYG00000008868) #11	ERCC1 (ENSCHYG00000008940) #12	FOSB (ENSCHYG00000009403) #13	RTN2 (ENSCHYG00000009668) #14	PPM1N (ENSCHYG00000009858) #15	VASP (ENSCHYG00000009950) #16	OPA3 (ENSCHYG00000010190) #17	ENSCHYG00000010242	GPR4 (ENSCHYG00000010273) #18	EML2 (ENSCHYG00000010342) #19	GIPR (ENSCHYG00000011385) #20	SNRPD2 (ENSCHYG00000011477) #21	QPCTL (ENSCHYG00000011523) #22	FBXO46 (ENSCHYG00000011575) #23	MEIOSIN (ENSCHYG00000011599) #24	SIX5 (ENSCHYG00000011699) #25	DMPK (ENSCHYG00000011768) #26	DMWD (ENSCHYG00000012422) #27	RSPH6A (ENSCHYG00000012525) #28	SYMPK (ENSCHYG00000012597) #29	FOXA3 (ENSCHYG00000012937) #30	IRF2BP1 (ENSCHYG00000012957) #31	MYPOP (ENSCHYG00000012965) #32	NANOS2 (ENSCHYG00000012987) #33	NOVA2 (ENSCHYG00000013004) #34	ENSCHYG00000013047	PGLYRP1 (ENSCHYG00000013331) #36	ENSCHYG00000013392 ##37
Percora_a	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Bovidae	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Caprinae	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.C ##37
Goat	MODERN SPECIES	9	KLC3 (ENSCHIG00000026294) #8	ERCC2 (ENSCHIG00000022980) #9	PPP1R13L (ENSCHIG00000025842) #10	ERCC1 (ENSCHIG00000025635) #12	POLR1G (ENSCHIG00000022038) #11	FOSB (ENSCHIG00000003296) #13	RTN2 (ENSCHIG00000014657) #14	PPM1N (ENSCHIG00000021371) #15	VASP (ENSCHIG00000012132) #16	OPA3 (ENSCHIG00000017112) #17	ENSCHIG00000010098	GPR4 (ENSCHIG00000005655) #18	EML2 (ENSCHIG00000013582) #19	GIPR (ENSCHIG00000020718) #20	ENSCHIG00000015755 #21	QPCTL (ENSCHIG00000027222) #22	FBXO46 (ENSCHIG00000008535) #23	SIX5 (ENSCHIG00000022800) #25	DMPK (ENSCHIG00000015894) #26	DMWD (ENSCHIG00000023485) #27	RSPH6A (ENSCHIG00000012473) #28	SYMPK (ENSCHIG00000026784) #29	FOXA3 (ENSCHIG00000011232) #30	IRF2BP1 (ENSCHIG00000002525) #31	MYPOP (ENSCHIG00000019016) #32	NANOS2 (ENSCHIG00000012637) #33	NOVA2 (ENSCHIG00000010547) #34	CCDC61 (ENSCHIG00000024140) #35	PGLYRP1 (ENSCHIG00000013020) #36	IGFL1 (ENSCHIG00000023173) ##37	HIF3A (ENSCHIG00000018939)
Rambouillet Sheep	MODERN SPECIES	5	KLC3 (ENSOARG00020006917) #8	ERCC2 (ENSOARG00020007166) #9	ENSOARG00020007820	PPP1R13L (ENSOARG00020007840) #10	POLR1G (ENSOARG00020007892) #11	ERCC1 (ENSOARG00020007969) #12	FOSB (ENSOARG00020008243) #13	RTN2 (ENSOARG00020008656) #14	PPM1N (ENSOARG00020008873) #15	VASP (ENSOARG00020009004) #16	OPA3 (ENSOARG00020009064) #17	GPR4 (ENSOARG00020009088) #18	EML2 (ENSOARG00020009160) #19	GIPR (ENSOARG00020010483) #20	SNRPD2 (ENSOARG00020011522) #21	QPCTL (ENSOARG00020011576) #22	FBXO46 (ENSOARG00020011686) #23	SIX5 (ENSOARG00020011904) #25	DMPK (ENSOARG00020011948) #26	DMWD (ENSOARG00020012078) #27	RSPH6A (ENSOARG00020012229) #28	SYMPK (ENSOARG00020012293) #29	FOXA3 (ENSOARG00020012489) #30	MYPOP (ENSOARG00020012637) #32	ENSOARG00020012685	NANOS2 (ENSOARG00020012700) #33	NOVA2 (ENSOARG00020012718) #34	CCDC61 (ENSOARG00020012803) #35	PGLYRP1 (ENSOARG00020012949) #36	IGFL1 (ENSOARG00020012997) ##37	HIF3A (ENSOARG00020013117)
Bovinae	ANCESTRAL SPECIES	3	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120.i #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Bos	ANCESTRAL SPECIES	4	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120.i #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Bos_b	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120.i #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Hybrid Bos Indicus	MODERN SPECIES	9	MARK4 (ENSBIXG00005021933)	CKM (ENSBIXG00005022002) #7	KLC3 (ENSBIXG00005022032) #8	ERCC2 (ENSBIXG00005022070) #9	PPP1R13L (ENSBIXG00005022122) #10	POLR1G (ENSBIXG00005007166) #11	ERCC1 (ENSBIXG00005022223) #12	FOSB (ENSBIXG00005022400) #13	RTN2 (ENSBIXG00005022451) #14	PPM1N (ENSBIXG00005022517) #15	VASP (ENSBIXG00005022552) #16	ENSBIXG00005022571 #17	EML2 (ENSBIXG00005022960) #19	GIPR (ENSBIXG00005023073) #20	SNRPD2 (ENSBIXG00005006167) #21	QPCTL (ENSBIXG00005003947) #22	FBXO46 (ENSBIXG00005003957) #23	MEIOSIN (ENSBIXG00005023205) #24	SIX5 (ENSBIXG00005023223) #25	DMPK (ENSBIXG00005003978) #26	DMWD (ENSBIXG00005023338) #27	RSPH6A (ENSBIXG00005023393) #28	SYMPK (ENSBIXG00005023428) #29	FOXA3 (ENSBIXG00005023439) #30	ENSBIXG00005023453 #31	MYPOP (ENSBIXG00005023469) #32	NANOS2 (ENSBIXG00005023479) #33	NOVA2 (ENSBIXG00005023501) #34	CCDC61 (ENSBIXG00005004038) #35	PGLYRP1 (ENSBIXG00005023625) #36	ENSBIXG00005023638
Cow	MODERN SPECIES	9	KLC3 (ENSBTAG00000002070) #8	ERCC2 (ENSBTAG00000002072) #9	PPP1R13L (ENSBTAG00000020689) #10	POLR1G (ENSBTAG00000023601) #11	ERCC1 (ENSBTAG00000017355) #12	FOSB (ENSBTAG00000008182) #13	RTN2 (ENSBTAG00000008185) #14	PPM1N (ENSBTAG00000014187) #15	VASP (ENSBTAG00000019604) #16	ENSBTAG00000049026 #17	OPA3 (ENSBTAG00000019605) #17	GPR4 (ENSBTAG00000018398) #18	EML2 (ENSBTAG00000015764) #19	GIPR (ENSBTAG00000005527) #20	SNRPD2 (ENSBTAG00000012177) #21	QPCTL (ENSBTAG00000012176) #22	FBXO46 (ENSBTAG00000048966) #23	SIX5 (ENSBTAG00000013346) #25	DMPK (ENSBTAG00000013347) #26	DMWD (ENSBTAG00000021417) #27	RSPH6A (ENSBTAG00000012097) #28	SYMPK (ENSBTAG00000012101) #29	FOXA3 (ENSBTAG00000012104) #30	ENSBTAG00000050077 #31	MYPOP (ENSBTAG00000045708) #32	ENSBTAG00000054722	NANOS2 (ENSBTAG00000047505) #33	NOVA2 (ENSBTAG00000013157) #34	CCDC61 (ENSBTAG00000005819) #35	PGLYRP1 (ENSBTAG00000002635) #36	ENSBTAG00000023367
Bos_a	ANCESTRAL SPECIES	16	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120.i #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.C ##37
Wild yak	MODERN SPECIES	1165	KLC3 (ENSBMUG00000020258) #8	ENSBMUG00000020276 #9	ENSBMUG00000020297 #9	PPP1R13L (ENSBMUG00000020329) #10	POLR1G (ENSBMUG00000020360) #11	ERCC1 (ENSBMUG00000020439) #12	FOSB (ENSBMUG00000020469) #13	RTN2 (ENSBMUG00000020491) #14	PPM1N (ENSBMUG00000020510) #15	VASP (ENSBMUG00000020524) #16	OPA3 (ENSBMUG00000020538) #17	GPR4 (ENSBMUG00000020549) #18	EML2 (ENSBMUG00000020571) #19	GIPR (ENSBMUG00000020673) #20	SNRPD2 (ENSBMUG00000020701) #21	QPCTL (ENSBMUG00000020734) #22	MEIOSIN (ENSBMUG00000020774) #24	ENSBMUG00000000137 #25
Domestic yak	MODERN SPECIES	12	MARK4 (ENSBGRG00000023592)	CKM (ENSBGRG00000023521) #7	KLC3 (ENSBGRG00000023303) #8	ERCC2 (ENSBGRG00000022782) #9	POLR1G (ENSBGRG00000022695) #11	ERCC1 (ENSBGRG00000022455) #12	FOSB (ENSBGRG00000022164) #13	RTN2 (ENSBGRG00000022025) #14	PPM1N (ENSBGRG00000021919) #15	VASP (ENSBGRG00000021830) #16	OPA3 (ENSBGRG00000021767) #17	GPR4 (ENSBGRG00000021757) #18	EML2 (ENSBGRG00000021380) #19	GIPR (ENSBGRG00000021139) #20	SNRPD2 (ENSBGRG00000021083) #21	QPCTL (ENSBGRG00000021008) #22	FBXO46 (ENSBGRG00000020994) #23	MEIOSIN (ENSBGRG00000020860) #24	SIX5 (ENSBGRG00000020815) #25	DMWD (ENSBGRG00000019948) #27	RSPH6A (ENSBGRG00000019805) #28	SYMPK (ENSBGRG00000019603) #29	FOXA3 (ENSBGRG00000019533) #30	IRF2BP1 (ENSBGRG00000019522) #31	MYPOP (ENSBGRG00000019478) #32	NANOS2 (ENSBGRG00000019460) #33	NOVA2 (ENSBGRG00000019401) #34	CCDC61 (ENSBGRG00000019266) #35	PGLYRP1 (ENSBGRG00000019198) #36	IGFL1 (ENSBGRG00000019136) ##37	HIF3A (ENSBGRG00000018647)
American bison	MODERN SPECIES	3227	CKM (ENSBBBG00000003808) #7	KLC3 (ENSBBBG00000003490) #8	ERCC2 (ENSBBBG00000001271) #9	PPP1R13L (ENSBBBG00000015318) #10	POLR1G (ENSBBBG00000015276) #11	ERCC1 (ENSBBBG00000015250) #12	FOSB (ENSBBBG00000003755) #13	RTN2 (ENSBBBG00000003740) #14	PPM1N (ENSBBBG00000015044) #15	VASP (ENSBBBG00000015011) #16	OPA3 (ENSBBBG00000003720) #17	GPR4 (ENSBBBG00000003575) #18	EML2 (ENSBBBG00000014978) #19	GIPR (ENSBBBG00000000834) #20	SNRPD2 (ENSBBBG00000000935) #21	QPCTL (ENSBBBG00000000961) #22	FBXO46 (ENSBBBG00000001009) #23	MEIOSIN (ENSBBBG00000001018) #24	ENSBBBG00000001050 #25	DMPK (ENSBBBG00000001064) #26	DMWD (ENSBBBG00000001216) #27	RSPH6A (ENSBBBG00000003680) #28	SYMPK (ENSBBBG00000014863) #29	FOXA3 (ENSBBBG00000014845) #30	IRF2BP1 (ENSBBBG00000014836) #31	NANOS2 (ENSBBBG00000014825) #33	NOVA2 (ENSBBBG00000014819) #34	CCDC61 (ENSBBBG00000002834) #35	PGLYRP1 (ENSBBBG00000006949) #36	ENSBBBG00000009057	IGFL1 (ENSBBBG00000014765) ##37
Siberian musk deer	MODERN SPECIES	124	ERCC2 (ENSMMSG00000003542) #9	PPP1R13L (ENSMMSG00000003509) #10	POLR1G (ENSMMSG00000003491) #11	ERCC1 (ENSMMSG00000003423) #12	FOSB (ENSMMSG00000003347) #13	RTN2 (ENSMMSG00000003303) #14	ENSMMSG00000003289 #15	ENSMMSG00000003279 #15	VASP (ENSMMSG00000003264) #16	ENSMMSG00000003249	OPA3 (ENSMMSG00000003240) #17	GPR4 (ENSMMSG00000003234) #18	EML2 (ENSMMSG00000003108) #19	GIPR (ENSMMSG00000002994) #20	ENSMMSG00000002952 #21	QPCTL (ENSMMSG00000002929) #22	FBXO46 (ENSMMSG00000002912) #23	SIX5 (ENSMMSG00000002869) #25	DMPK (ENSMMSG00000002626) #26	DMWD (ENSMMSG00000002577) #27	RSPH6A (ENSMMSG00000002561) #28	SYMPK (ENSMMSG00000002514) #29	FOXA3 (ENSMMSG00000002476) #30	IRF2BP1 (ENSMMSG00000002468) #31	MYPOP (ENSMMSG00000002452) #32	ENSMMSG00000002435	NANOS2 (ENSMMSG00000002428) #33	NOVA2 (ENSMMSG00000002415) #34	CCDC61 (ENSMMSG00000002366) #35	PGLYRP1 (ENSMMSG00000002338) #36	IGFL1 (ENSMMSG00000002324) ##37
Camelidae	ANCESTRAL SPECIES	15	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00990000210495	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35
Arabian camel	MODERN SPECIES	35	CKM (ENSCDRG00005007135) #7	KLC3 (ENSCDRG00005007396) #8	ERCC2 (ENSCDRG00005007441) #9	PPP1R13L (ENSCDRG00005007577) #10	POLR1G (ENSCDRG00005007827) #11	ERCC1 (ENSCDRG00005007850) #12	FOSB (ENSCDRG00005008193) #13	RTN2 (ENSCDRG00005008404) #14	ENSCDRG00005008614 #15	VASP (ENSCDRG00005008655) #16	OPA3 (ENSCDRG00005008699) #17	GPR4 (ENSCDRG00005008750) #18	EML2 (ENSCDRG00005008817) #19	GIPR (ENSCDRG00005009575) #20	SNRPD2 (ENSCDRG00005009839) #21	QPCTL (ENSCDRG00005009916) #22	FBXO46 (ENSCDRG00005010007) #23	MEIOSIN (ENSCDRG00005010033) #24	ENSCDRG00005010165	ENSCDRG00005010261 #25	DMPK (ENSCDRG00005010303) #26	DMWD (ENSCDRG00005010785) #27	RSPH6A (ENSCDRG00005010837) #28	SYMPK (ENSCDRG00005011023) #29	FOXA3 (ENSCDRG00005011166) #30	IRF2BP1 (ENSCDRG00005011195) #31	MYPOP (ENSCDRG00005011260) #32	ENSCDRG00005011280	ENSCDRG00005011302 #33	NOVA2 (ENSCDRG00005011316) #34	CCDC61 (ENSCDRG00005011347) #35
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Chiroptera	ANCESTRAL SPECIES	16	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Greater horseshoe bat	MODERN SPECIES	6	CKM (ENSRFEG00010006512) #7	ENSRFEG00010006537	KLC3 (ENSRFEG00010006568) #8	ERCC2 (ENSRFEG00010006620) #9	PPP1R13L (ENSRFEG00010006729) #10	POLR1G (ENSRFEG00010006762) #11	ERCC1 (ENSRFEG00010006811) #12	FOSB (ENSRFEG00010006945) #13	RTN2 (ENSRFEG00010007128) #14	VASP (ENSRFEG00010007608) #16	OPA3 (ENSRFEG00010007786) #17	GPR4 (ENSRFEG00010007847) #18	EML2 (ENSRFEG00010007875) #19	GIPR (ENSRFEG00010008371) #20	ENSRFEG00010008870 #21	QPCTL (ENSRFEG00010008930) #22	MEIOSIN (ENSRFEG00010009004) #24	SIX5 (ENSRFEG00010009093) #25	DMPK (ENSRFEG00010009224) #26	DMWD (ENSRFEG00010009798) #27	RSPH6A (ENSRFEG00010009900) #28	SYMPK (ENSRFEG00010010076) #29	FOXA3 (ENSRFEG00010010122) #30	IRF2BP1 (ENSRFEG00010010157) #31	MYPOP (ENSRFEG00010010173) #32	ENSRFEG00010010211	NANOS2 (ENSRFEG00010010225) #33	NOVA2 (ENSRFEG00010010242) #34	CCDC61 (ENSRFEG00010010279) #35	PGLYRP1 (ENSRFEG00010010376) #36	IGFL4 (ENSRFEG00010010411) #37
Microbat	MODERN SPECIES	1739											OPA3 (ENSMLUG00000024648) #17	GPR4 (ENSMLUG00000001447) #18	EML2 (ENSMLUG00000001278) #19	GIPR (ENSMLUG00000001295) #20	ENSMLUG00000001306 #21	QPCTL (ENSMLUG00000001310) #22	FBXO46 (ENSMLUG00000025419) #23	SIX5 (ENSMLUG00000001318) #25	DMPK (ENSMLUG00000001323) #26	DMWD (ENSMLUG00000001343) #27
Megabat	MODERN SPECIES	470	KLC3 (ENSPVAG00000001327) #8	ERCC2 (ENSPVAG00000001328) #9	PPP1R13L (ENSPVAG00000001329) #10	POLR1G (ENSPVAG00000001330) #11	ERCC1 (ENSPVAG00000001331) #12	FOSB (ENSPVAG00000001332) #13	RTN2 (ENSPVAG00000001333) #14	PPM1N (ENSPVAG00000001334) #15	ENSPVAG00000001335 #15	VASP (ENSPVAG00000001336) #16	OPA3 (ENSPVAG00000001338) #17	GPR4 (ENSPVAG00000001339) #18	EML2 (ENSPVAG00000001340) #19	GIPR (ENSPVAG00000001343) #20	SNRPD2 (ENSPVAG00000001345) #21	QPCTL (ENSPVAG00000001346) #22	SIX5 (ENSPVAG00000001347) #25	DMPK (ENSPVAG00000001349) #26	DMWD (ENSPVAG00000001352) #27	RSPH6A (ENSPVAG00000001354) #28	SYMPK (ENSPVAG00000001355) #29	FOXA3 (ENSPVAG00000001359) #30	IRF2BP1 (ENSPVAG00000001361) #31	MYPOP (ENSPVAG00000001362) #32	NANOS2 (ENSPVAG00000001363) #33
Equus	ANCESTRAL SPECIES	1	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006.g #36
Horse	MODERN SPECIES	1	CKM (ENSECAG00000022433) #7	KLC3 (ENSECAG00000022555) #8	ERCC2 (ENSECAG00000036849) #9	PPP1R13L (ENSECAG00000024828) #10	POLR1G (ENSECAG00000032490) #11	ERCC1 (ENSECAG00000011385) #12	FOSB (ENSECAG00000018002) #13	RTN2 (ENSECAG00000022897) #14	PPM1N (ENSECAG00000005419) #15	VASP (ENSECAG00000007818) #16	OPA3 (ENSECAG00000014284) #17	GPR4 (ENSECAG00000045714) #18	EML2 (ENSECAG00000018032) #19	GIPR (ENSECAG00000015923) #20	SNRPD2 (ENSECAG00000007824) #21	QPCTL (ENSECAG00000009265) #22	FBXO46 (ENSECAG00000032958) #23	MEIOSIN (ENSECAG00000036481) #24	DMPK (ENSECAG00000016750) #26	RSPH6A (ENSECAG00000019005) #28	SYMPK (ENSECAG00000008163) #29	FOXA3 (ENSECAG00000005936) #30	IRF2BP1 (ENSECAG00000005987) #31	NANOS2 (ENSECAG00000006033) #33	ENSECAG00000054420	NOVA2 (ENSECAG00000024041) #34	CCDC61 (ENSECAG00000009015) #35	ENSECAG00000032321 #36	ENSECAG00000039739 #36	ENSECAG00000029300 ##37	ENSECAG00000012514
Donkey	MODERN SPECIES	18	CKM (ENSEASG00005004121) #7	KLC3 (ENSEASG00005013822) #8	ERCC2 (ENSEASG00005013856) #9	PPP1R13L (ENSEASG00005014187) #10	POLR1G (ENSEASG00005014188) #11	ERCC1 (ENSEASG00005014190) #12	FOSB (ENSEASG00005025490) #13	RTN2 (ENSEASG00005014192) #14	ENSEASG00005037630 #15	VASP (ENSEASG00005014200) #16	ENSEASG00005028592 #17	GPR4 (ENSEASG00005028869) #18	EML2 (ENSEASG00005014204) #19	GIPR (ENSEASG00005014208) #20	ENSEASG00005014210 #21	QPCTL (ENSEASG00005014212) #22	FBXO46 (ENSEASG00005029424) #23	MEIOSIN (ENSEASG00005014215) #24	SIX5 (ENSEASG00005014218) #25	DMPK (ENSEASG00005014220) #26	DMWD (ENSEASG00005014223) #27	RSPH6A (ENSEASG00005014225) #28	SYMPK (ENSEASG00005014227) #29	FOXA3 (ENSEASG00005037896) #30	IRF2BP1 (ENSEASG00005014232) #31	MYPOP (ENSEASG00005028554) #32	ENSEASG00005014234	NANOS2 (ENSEASG00005014235) #33	NOVA2 (ENSEASG00005038406) #34	CCDC61 (ENSEASG00005027854) #35	ENSEASG00005025557 #36
Carnivora	ANCESTRAL SPECIES	2	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396
Caniformia	ANCESTRAL SPECIES	1	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Ursidae	ANCESTRAL SPECIES	30	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00950000186179	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Ursus	ANCESTRAL SPECIES	13	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00950000186179	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B.a.a #37
American black bear	MODERN SPECIES	655												EML2 (ENSUAMG00000023177) #19	ENSUAMG00000023176 #19	GIPR (ENSUAMG00000023174) #20	ENSUAMG00000023173 #21	QPCTL (ENSUAMG00000023172) #22	FBXO46 (ENSUAMG00000023171) #23
Polar bear	MODERN SPECIES	115	ENSUMAG00000023480 #8	ERCC2 (ENSUMAG00000023492) #9	ENSUMAG00000023583	POLR1G (ENSUMAG00000023587) #11	ERCC1 (ENSUMAG00000023588) #12	FOSB (ENSUMAG00000023589) #13	RTN2 (ENSUMAG00000023591) #14	ENSUMAG00000023592 #15	VASP (ENSUMAG00000023593) #16	ENSUMAG00000023595 #17	OPA3 (ENSUMAG00000023597) #17	GPR4 (ENSUMAG00000023598) #18	EML2 (ENSUMAG00000023616) #19	GIPR (ENSUMAG00000023684) #20	SNRPD2 (ENSUMAG00000023685) #21	QPCTL (ENSUMAG00000023687) #22	ENSUMAG00000023690 #23	DMPK (ENSUMAG00000023693) #26	RSPH6A (ENSUMAG00000023697) #28	SYMPK (ENSUMAG00000023698) #29	NANOS2 (ENSUMAG00000023699) #33	CCDC61 (ENSUMAG00000023701) #35	PGLYRP1 (ENSUMAG00000023702) #36	ENSUMAG00000023704 #37	ENSUMAG00000023706	ENSUMAG00000023707 #37	HIF3A (ENSUMAG00000023708)	PPP5C (ENSUMAG00000023710)	PNMA8A (ENSUMAG00000023711)	PNMA8C (ENSUMAG00000023712)	CCDC8 (ENSUMAG00000023713)
Giant Panda	MODERN SPECIES	3	EXOC3L2 (ENSAMEG00000029605)	KLC3 (ENSAMEG00000012526) #8	ERCC2 (ENSAMEG00000012464) #9	ENSAMEG00000023626	PPP1R13L (ENSAMEG00000012444) #10	POLR1G (ENSAMEG00000012438) #11	ERCC1 (ENSAMEG00000012418) #12	FOSB (ENSAMEG00000012405) #13	PPM1N (ENSAMEG00000012379) #15	VASP (ENSAMEG00000000957) #16	ENSAMEG00000012385 #14	GPR4 (ENSAMEG00000030728) #18	EML2 (ENSAMEG00000000872) #19	GIPR (ENSAMEG00000000819) #20	ENSAMEG00000000818 #21	QPCTL (ENSAMEG00000000797) #22	FBXO46 (ENSAMEG00000025250) #23	ENSAMEG00000027887 #24	SIX5 (ENSAMEG00000025878) #25	DMPK (ENSAMEG00000000775) #26	DMWD (ENSAMEG00000026871) #27	SYMPK (ENSAMEG00000000680) #29	FOXA3 (ENSAMEG00000031395) #30	IRF2BP1 (ENSAMEG00000029242) #31	MYPOP (ENSAMEG00000025217) #32	ENSAMEG00000027611	NANOS2 (ENSAMEG00000000660) #33	CCDC61 (ENSAMEG00000000629) #35	PGLYRP1 (ENSAMEG00000000626) #36	ENSAMEG00000008655 #37	HIF3A (ENSAMEG00000008615)
Mustelinae	ANCESTRAL SPECIES	7	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
American mink	MODERN SPECIES	135	ENSNVIG00000008342	KLC3 (ENSNVIG00000008354) #8	ERCC2 (ENSNVIG00000008419) #9	PPP1R13L (ENSNVIG00000008571) #10	POLR1G (ENSNVIG00000008637) #11	ERCC1 (ENSNVIG00000008650) #12	FOSB (ENSNVIG00000008682) #13	RTN2 (ENSNVIG00000008748) #14	PPM1N (ENSNVIG00000008818) #15	VASP (ENSNVIG00000008886) #16	OPA3 (ENSNVIG00000008924) #17	GPR4 (ENSNVIG00000008931) #18	EML2 (ENSNVIG00000008942) #19	GIPR (ENSNVIG00000009001) #20	SNRPD2 (ENSNVIG00000009077) #21	QPCTL (ENSNVIG00000009114) #22	FBXO46 (ENSNVIG00000009137) #23	MEIOSIN (ENSNVIG00000009144) #24	SIX5 (ENSNVIG00000009150) #25	DMPK (ENSNVIG00000009169) #26	DMWD (ENSNVIG00000009289) #27	RSPH6A (ENSNVIG00000009330) #28	SYMPK (ENSNVIG00000009342) #29	FOXA3 (ENSNVIG00000009388) #30	IRF2BP1 (ENSNVIG00000009402) #31	MYPOP (ENSNVIG00000009413) #32	ENSNVIG00000009418	NANOS2 (ENSNVIG00000009419) #33	NOVA2 (ENSNVIG00000009425) #34	CCDC61 (ENSNVIG00000009441) #35	PGLYRP1 (ENSNVIG00000009479) #36
Ferret	MODERN SPECIES	291	MARK4 (ENSMPUG00000006053)	CKM (ENSMPUG00000006049) #7	KLC3 (ENSMPUG00000006006) #8	ERCC2 (ENSMPUG00000005989) #9	PPP1R13L (ENSMPUG00000005975) #10	POLR1G (ENSMPUG00000005965) #11	ERCC1 (ENSMPUG00000005947) #12	FOSB (ENSMPUG00000005914) #13	RTN2 (ENSMPUG00000005903) #14	PPM1N (ENSMPUG00000005895) #15	VASP (ENSMPUG00000005880) #16	OPA3 (ENSMPUG00000005872) #17	EML2 (ENSMPUG00000005855) #19	GIPR (ENSMPUG00000005756) #20	SNRPD2 (ENSMPUG00000005733) #21	QPCTL (ENSMPUG00000005727) #22	FBXO46 (ENSMPUG00000019374) #23	MEIOSIN (ENSMPUG00000005720) #24	SIX5 (ENSMPUG00000005715) #25	DMPK (ENSMPUG00000005629) #26	DMWD (ENSMPUG00000005593) #27	RSPH6A (ENSMPUG00000005534) #28	SYMPK (ENSMPUG00000005505) #29	FOXA3 (ENSMPUG00000005501) #30	IRF2BP1 (ENSMPUG00000019372) #31	MYPOP (ENSMPUG00000005494) #32	NANOS2 (ENSMPUG00000019371) #33	NOVA2 (ENSMPUG00000005444) #34	CCDC61 (ENSMPUG00000005428) #35	PGLYRP1 (ENSMPUG00000005395) #36	ENSMPUG00000005385 #37
Canidae	ANCESTRAL SPECIES	5	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275.d #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Canis_lupus	ANCESTRAL SPECIES		ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275.d #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Dingo	MODERN SPECIES	125	CKM (ENSCAFG00020012218) #7	KLC3 (ENSCAFG00020012214) #8	ERCC2 (ENSCAFG00020011390) #9	PPP1R13L (ENSCAFG00020011344) #10	POLR1G (ENSCAFG00020011342) #11	ERCC1 (ENSCAFG00020011298) #12	FOSB (ENSCAFG00020011287) #13	RTN2 (ENSCAFG00020011246) #14	PPM1N (ENSCAFG00020011228) #15	ENSCAFG00020011202 #16	OPA3 (ENSCAFG00020011195) #17	GPR4 (ENSCAFG00020011193) #18	EML2 (ENSCAFG00020003779) #19	GIPR (ENSCAFG00020003543) #20	ENSCAFG00020003532 #21	QPCTL (ENSCAFG00020003527) #22	FBXO46 (ENSCAFG00020003524) #23	MEIOSIN (ENSCAFG00020003516) #24	SIX5 (ENSCAFG00020003514) #25	DMPK (ENSCAFG00020002021) #26	DMWD (ENSCAFG00020001886) #27	RSPH6A (ENSCAFG00020001834) #28	SYMPK (ENSCAFG00020001815) #29	FOXA3 (ENSCAFG00020001802) #30	IRF2BP1 (ENSCAFG00020001798) #31	MYPOP (ENSCAFG00020001794) #32	ENSCAFG00020001778	NANOS2 (ENSCAFG00020001772) #33	NOVA2 (ENSCAFG00020001763) #34	CCDC61 (ENSCAFG00020001761) #35	PGLYRP1 (ENSCAFG00020001739) #36
Dog	MODERN SPECIES		CKM (ENSCAFG00845005622) #7	KLC3 (ENSCAFG00845005524) #8	ERCC2 (ENSCAFG00845005380) #9	ENSCAFG00845005341	PPP1R13L (ENSCAFG00845005302) #10	POLR1G (ENSCAFG00845005277) #11	ERCC1 (ENSCAFG00845005241) #12	FOSB (ENSCAFG00845005191) #13	RTN2 (ENSCAFG00845005157) #14	PPM1N (ENSCAFG00845005133) #15	VASP (ENSCAFG00845005094) #16	OPA3 (ENSCAFG00845005041) #17	GPR4 (ENSCAFG00845005035) #18	EML2 (ENSCAFG00845004953) #19	GIPR (ENSCAFG00845004894) #20	QPCTL (ENSCAFG00845004866) #22	FBXO46 (ENSCAFG00845004849) #23	MEIOSIN (ENSCAFG00845004838) #24	SIX5 (ENSCAFG00845004815) #25	DMPK (ENSCAFG00845004793) #26	DMWD (ENSCAFG00845004767) #27	SYMPK (ENSCAFG00845004681) #29	FOXA3 (ENSCAFG00845004638) #30	IRF2BP1 (ENSCAFG00845004633) #31	NANOS2 (ENSCAFG00845004625) #33	NOVA2 (ENSCAFG00845004618) #34	CCDC61 (ENSCAFG00845004579) #35	PGLYRP1 (ENSCAFG00845004551) #36	ENSCAFG00845004536	ENSCAFG00845004529 #37	HIF3A (ENSCAFG00845004467)
Red fox	MODERN SPECIES	101	ENSVVUG00000004131	ENSVVUG00000004122 #10	ENSVVUG00000004117 #10	CD3EAP (ENSVVUG00000004115) #11	ERCC1 (ENSVVUG00000004091) #12	FOSB (ENSVVUG00000004082) #13	RTN2 (ENSVVUG00000004056) #14	PPM1N (ENSVVUG00000004040) #15	VASP (ENSVVUG00000004020) #16	ENSVVUG00000004018 #17	OPA3 (ENSVVUG00000004015) #17	GPR4 (ENSVVUG00000004011) #18	EML2 (ENSVVUG00000003317) #19	GIPR (ENSVVUG00000003197) #20	ENSVVUG00000003181 #21	QPCTL (ENSVVUG00000003169) #22	FBXO46 (ENSVVUG00000003160) #23	MEIOSIN (ENSVVUG00000003147) #24	SIX5 (ENSVVUG00000003131) #25	DMPK (ENSVVUG00000003094) #26	DMWD (ENSVVUG00000003082) #27	RSPH6A (ENSVVUG00000003045) #28	SYMPK (ENSVVUG00000003024) #29	FOXA3 (ENSVVUG00000003017) #30	IRF2BP1 (ENSVVUG00000003011) #31	MYPOP (ENSVVUG00000003001) #32	ENSVVUG00000002998	NANOS2 (ENSVVUG00000002993) #33	ENSVVUG00000002971 #34	CCDC61 (ENSVVUG00000002894) #35	PGLYRP1 (ENSVVUG00000002874) #36
Felidae	ANCESTRAL SPECIES	7	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000171396
Panthera	ANCESTRAL SPECIES	20	ENSGT01030000234877	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608.b #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B.a.a #37
lion	MODERN SPECIES	15							FOSB (ENSPLOG00000020191) #13	RTN2 (ENSPLOG00000020402) #14	PPM1N (ENSPLOG00000020494) #15	VASP (ENSPLOG00000020525) #16	OPA3 (ENSPLOG00000020572) #17	GPR4 (ENSPLOG00000020587) #18	EML2 (ENSPLOG00000020666) #19	GIPR (ENSPLOG00000020929) #20	SNRPD2 (ENSPLOG00000021167) #21	QPCTL (ENSPLOG00000021202) #22	FBXO46 (ENSPLOG00000021240) #23	ENSPLOG00000021304	DMPK (ENSPLOG00000021360) #26	DMWD (ENSPLOG00000021521) #27	RSPH6A (ENSPLOG00000021574) #28	SYMPK (ENSPLOG00000021677) #29	FOXA3 (ENSPLOG00000021787) #30	IRF2BP1 (ENSPLOG00000021798) #31	MYPOP (ENSPLOG00000021806) #32	NANOS2 (ENSPLOG00000021823) #33	NOVA2 (ENSPLOG00000021834) #34	CCDC61 (ENSPLOG00000021860) #35	PGLYRP1 (ENSPLOG00000021909) #36	ENSPLOG00000021927 #37	ENSPLOG00000005466 #37
leopard	MODERN SPECIES	103	CKM (ENSPPRG00000023495) #7	KLC3 (ENSPPRG00000022836) #8	ERCC2 (ENSPPRG00000000507) #9	PPP1R13L (ENSPPRG00000001485) #10	POLR1G (ENSPPRG00000001954) #11	ERCC1 (ENSPPRG00000003321) #12	FOSB (ENSPPRG00000004058) #13	RTN2 (ENSPPRG00000004264) #14	PPM1N (ENSPPRG00000005053) #15	VASP (ENSPPRG00000008102) #16	ENSPPRG00000008284 #17	OPA3 (ENSPPRG00000009051) #17	GPR4 (ENSPPRG00000015030) #18	EML2 (ENSPPRG00000010239) #19	GIPR (ENSPPRG00000011461) #20	QPCTL (ENSPPRG00000011974) #22	SNRPD2 (ENSPPRG00000012309) #21	FBXO46 (ENSPPRG00000015053) #23	SIX5 (ENSPPRG00000014758) #25	DMPK (ENSPPRG00000002974) #26	DMWD (ENSPPRG00000003246) #27	RSPH6A (ENSPPRG00000003549) #28	FOXA3 (ENSPPRG00000004095) #30	SYMPK (ENSPPRG00000004282) #29	MYPOP (ENSPPRG00000005447) #32	ENSPPRG00000005594	NANOS2 (ENSPPRG00000015211) #33	NOVA2 (ENSPPRG00000005941) #34	CCDC61 (ENSPPRG00000006512) #35	PGLYRP1 (ENSPPRG00000006608) #36	ENSPPRG00000006656 #37
Tiger	MODERN SPECIES	558												GPR4 (ENSPTIG00000010675) #18	EML2 (ENSPTIG00000020612) #19	GIPR (ENSPTIG00000005235) #20	ENSPTIG00000006666 #21	QPCTL (ENSPTIG00000007157) #22
Cat	MODERN SPECIES	246	CKM (ENSFCAG00000002672) #7	KLC3 (ENSFCAG00000002676) #8	ERCC2 (ENSFCAG00000002679) #9	PPP1R13L (ENSFCAG00000033518) #10	POLR1G (ENSFCAG00000043166) #11	ERCC1 (ENSFCAG00000007439) #12	FOSB (ENSFCAG00000030571) #13	RTN2 (ENSFCAG00000007430) #14	PPM1N (ENSFCAG00000007428) #15	VASP (ENSFCAG00000007424) #16	OPA3 (ENSFCAG00000030677) #17	GPR4 (ENSFCAG00000031197) #18	EML2 (ENSFCAG00000007330) #19	GIPR (ENSFCAG00000007332) #20	SNRPD2 (ENSFCAG00000022530) #21	QPCTL (ENSFCAG00000012476) #22	MEIOSIN (ENSFCAG00000038247) #24	SIX5 (ENSFCAG00000030970) #25	DMPK (ENSFCAG00000007334) #26	FBXO46 (ENSFCAG00000007335) #23	SYMPK (ENSFCAG00000007337) #29	FOXA3 (ENSFCAG00000027946) #30	MYPOP (ENSFCAG00000028262) #32	NANOS2 (ENSFCAG00000027661) #33	NOVA2 (ENSFCAG00000024784) #34	CCDC61 (ENSFCAG00000009510) #35	ENSFCAG00000051879	PGLYRP1 (ENSFCAG00000028691) #36	ENSFCAG00000044207 #37	ENSFCAG00000025239 #37	HIF3A (ENSFCAG00000014181)
Atlantogenata	ANCESTRAL SPECIES	48	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608 #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37
Xenarthra	ANCESTRAL SPECIES	122								ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608 #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00570000080851 #24	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00940000162120 #31	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	4293								FOSB (ENSDNOG00000008748) #13	RTN2 (ENSDNOG00000031191) #14	VASP (ENSDNOG00000023706) #16	OPA3 (ENSDNOG00000034189) #17	GPR4 (ENSDNOG00000043810) #18	EML2 (ENSDNOG00000046547) #19	ENSDNOG00000037844 #20	SNRPD2 (ENSDNOG00000002365) #21	ENSDNOG00000046083 #22	FBXO46 (ENSDNOG00000032421) #23	MEIOSIN (ENSDNOG00000037324) #24	SIX5 (ENSDNOG00000035763) #25	ENSDNOG00000037350 #26	ENSDNOG00000047818 #26	RSPH6A (ENSDNOG00000016145) #28	SYMPK (ENSDNOG00000016149) #29	FOXA3 (ENSDNOG00000032062) #30	IRF2BP1 (ENSDNOG00000016864) #31	MYPOP (ENSDNOG00000044809) #32	NANOS2 (ENSDNOG00000044718) #33	NOVA2 (ENSDNOG00000031258) #34	CCDC61 (ENSDNOG00000023673) #35	PGLYRP1 (ENSDNOG00000033764) #36
Armadillo	MODERN SPECIES	349													ENSDNOG00000037127	ENSDNOG00000009594	GDNF (ENSDNOG00000046868)	ENSDNOG00000038461 #22	WDR70 (ENSDNOG00000041272)	NUP155 (ENSDNOG00000011282)	CPLANE1 (ENSDNOG00000039178)	NIPBL (ENSDNOG00000010864)	SLC1A3 (ENSDNOG00000046806)
Sloth	MODERN SPECIES	612																QPCTL (ENSCHOG00000008333) #22
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00940000159555	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608 #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37	ENSGT00390000009557.C ##37	ENSGT00940000161745
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00940000159555	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000162356 #8	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000162694 #15	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00940000153887.B #19	ENSGT00940000161988 #20	ENSGT00390000017608 #21	ENSGT00390000003107.b #22	ENSGT00530000064222.a #23	ENSGT00940000162237 #25	ENSGT00940000162019 #26	ENSGT00390000007686.a #27	ENSGT00500000044869.a.b #28	ENSGT00390000017045 #29	ENSGT00940000162453 #30	ENSGT00450000040421 #32	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00940000154133.B #35	ENSGT00940000161006 #36	ENSGT00390000009557.B #37	ENSGT00390000009557.C ##37	ENSGT00940000161745
Elephant	MODERN SPECIES	375	MARK4 (ENSLAFG00000011196)	CKM (ENSLAFG00000022873) #7	ERCC2 (ENSLAFG00000006888) #9	PPP1R13L (ENSLAFG00000001823) #10	POLR1G (ENSLAFG00000001827) #11	ERCC1 (ENSLAFG00000001829) #12	FOSB (ENSLAFG00000008834) #13	RTN2 (ENSLAFG00000028220) #14	VASP (ENSLAFG00000026860) #16	ENSLAFG00000027518 #17	ENSLAFG00000028620 #17	EML2 (ENSLAFG00000031949) #19	GIPR (ENSLAFG00000027053) #20	FBXO46 (ENSLAFG00000027244) #23	SNRPD2 (ENSLAFG00000004205) #21	QPCTL (ENSLAFG00000004208) #22	SIX5 (ENSLAFG00000030935) #25	DMPK (ENSLAFG00000010771) #26	DMWD (ENSLAFG00000014916) #27	RSPH6A (ENSLAFG00000008722) #28	SYMPK (ENSLAFG00000008726) #29	FOXA3 (ENSLAFG00000030436) #30	NANOS2 (ENSLAFG00000014090) #33	NOVA2 (ENSLAFG00000025917) #34	CCDC61 (ENSLAFG00000003784) #35	ENSLAFG00000011331 #36	IGFL4 (ENSLAFG00000001349) #37	ENSLAFG00000022007 #36	ENSLAFG00000027748 #37	ENSLAFG00000028116 #37	ENSLAFG00000028836 #37
Hyrax	MODERN SPECIES	1936													EML2 (ENSPCAG00000016696) #19	GIPR (ENSPCAG00000016776) #20	SNRPD2 (ENSPCAG00000016818) #21	QPCTL (ENSPCAG00000016828) #22
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00940000171396	ENSGT00940000154133.B #35	ENSGT00940000161740 #34	ENSGT00950000183135.A.a #33	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00940000162120 #31	ENSGT00940000162453 #30	ENSGT00390000017045 #29	ENSGT00500000044869.a.b #28	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00570000080851 #24	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00390000017608 #21	ENSGT00940000161988 #20	ENSGT00940000177245	ENSGT00940000153887.B #19	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00390000009795 #17	ENSGT00940000156765 #16	ENSGT00940000160599 #14	ENSGT00940000160358 #13	ENSGT00390000011275 #12	ENSGT00450000040362 #11	ENSGT00940000160551 #10	ENSGT00950000182970.C #9	ENSGT00940000162356 #8	ENSGT00950000182772.A.a.a.b #7
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000171396	ENSGT00940000154133.B #35	ENSGT00940000161740 #34	ENSGT00950000183135.A.a #33	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00940000162120 #31	ENSGT00940000162453 #30	ENSGT00390000017045 #29	ENSGT00500000044869.a.b #28	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00570000080851 #24	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00390000017608 #21	ENSGT00940000161988 #20	ENSGT00940000177245	ENSGT00940000153887.B #19	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00390000009795 #17	ENSGT00940000156765 #16	ENSGT00940000160599 #14	ENSGT00940000160358 #13	ENSGT00390000011275 #12	ENSGT00450000040362 #11	ENSGT00940000160551 #10	ENSGT00950000182970.C #9	ENSGT00940000162356 #8	ENSGT00950000182772.A.a.a.b #7
Diprotodontia	ANCESTRAL SPECIES	58	ENSGT00940000171396	ENSGT00940000154133.B #35	ENSGT00940000161740 #34	ENSGT00950000183135.A.a #33	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00940000162120 #31	ENSGT00940000162453 #30	ENSGT00390000017045 #29	ENSGT00500000044869.a.b #28	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00570000080851 #24	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00390000017608 #21	ENSGT00940000161988 #20	ENSGT00940000177245	ENSGT00940000153887.B #19	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00390000009795 #17	ENSGT00940000156765 #16	ENSGT00940000160599 #14
Diprotodontia_a	ANCESTRAL SPECIES	56	ENSGT00940000171396	ENSGT00940000154133.B #35	ENSGT00940000161740 #34	ENSGT00950000183135.A.a #33	ENSGT00450000040421 #32	ENSGT00860000136302	ENSGT00940000162120 #31	ENSGT00940000162453 #30	ENSGT00390000017045 #29	ENSGT00500000044869.a.b #28	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00570000080851 #24	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00390000017608 #21	ENSGT00940000161988 #20	ENSGT00940000177245	ENSGT00940000153887.B #19	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00390000009795 #17	ENSGT00940000156765 #16	ENSGT00940000160599 #14
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1158	ENSVURG00010021540	ENSVURG00010021538 #36	ENSVURG00010021533	ENSVURG00010021526 #35	ENSVURG00010021522 #34	ENSVURG00010021516 #33	ENSVURG00010021512 #32	ENSVURG00010021509 #31	ENSVURG00010021505 #30	ENSVURG00010021491 #29	ENSVURG00010021485 #28	ENSVURG00010021481 #27	ENSVURG00010021471 #26	ENSVURG00010021465 #25	ENSVURG00010021462 #23	ENSVURG00010021459 #22	ENSVURG00010021455 #21	ENSVURG00010021450 #20	ENSVURG00010021446	ENSVURG00010021438 #19	ENSVURG00010021437 #18	ENSVURG00010021434 #17	ENSVURG00010021427 #16	ENSVURG00010021416 #14
Common wonbat	MODERN SPECIES	1158	ENSVURG00010004245	ENSVURG00010004241	ENSVURG00010004231 #36	ENSVURG00010004226 #35	ENSVURG00010004223 #34	ENSVURG00010004212 #33	ENSVURG00010004210 #32	ENSVURG00010004203 #31	ENSVURG00010004196 #30	ENSVURG00010004161 #29	ENSVURG00010004141 #28	ENSVURG00010004126 #27	ENSVURG00010004121 #26	ENSVURG00010004112 #25	ENSVURG00010004100 #23	ENSVURG00010004092 #22	ENSVURG00010004074 #21	ENSVURG00010004012 #20	ENSVURG00010003997	ENSVURG00010003972 #19	ENSVURG00010003964 #18	ENSVURG00010003961 #17	ENSVURG00010003948 #16	ENSVURG00010003940 #14	ENSVURG00010003924 #14	ENSVURG00010003911	ENSVURG00010003906	ENSVURG00010003882	ENSVURG00010003876	ENSVURG00010003863	CYP2S1 (ENSVURG00010003843)
koala	MODERN SPECIES	398	ENSPCIG00000022769 #36	CCDC61 (ENSPCIG00000032572) #35	NOVA2 (ENSPCIG00000007632) #34	ENSPCIG00000007637 #33	ENSPCIG00000036648 #32	ENSPCIG00000007640	IRF2BP1 (ENSPCIG00000007642) #31	FOXA3 (ENSPCIG00000007644) #30	SYMPK (ENSPCIG00000024476) #29	RSPH6A (ENSPCIG00000024486) #28	DMWD (ENSPCIG00000022992) #27	DMPK (ENSPCIG00000022991) #26	SIX5 (ENSPCIG00000022990) #25	ENSPCIG00000022989 #24	FBXO46 (ENSPCIG00000022988) #23	QPCTL (ENSPCIG00000022987) #22	SNRPD2 (ENSPCIG00000022986) #21	GIPR (ENSPCIG00000022980) #20	EML2 (ENSPCIG00000022971) #19	GPR4 (ENSPCIG00000022968) #18	OPA3 (ENSPCIG00000037324) #17	VASP (ENSPCIG00000022959) #16	RTN2 (ENSPCIG00000022955) #14
Wallaby	MODERN SPECIES	14963																QPCTL (ENSMEUG00000002612) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000029336	ENSSHAG00000021410	ENSSHAG00000027850	ENSSHAG00000016916 #36	CCDC61 (ENSSHAG00000023008) #35	NOVA2 (ENSSHAG00000025441) #34	NANOS2 (ENSSHAG00000017034) #33	ENSSHAG00000028617 #30	SYMPK (ENSSHAG00000003139) #29	RSPH6A (ENSSHAG00000001287) #28	DMWD (ENSSHAG00000000776) #27	DMPK (ENSSHAG00000000724) #26	SIX5 (ENSSHAG00000024498) #25	ENSSHAG00000001754 #24	ENSSHAG00000028308 #23	ENSSHAG00000023843 #22	ENSSHAG00000029129 #21	GIPR (ENSSHAG00000030736) #20	EML2 (ENSSHAG00000002041) #19	VASP (ENSSHAG00000003369) #16	RTN2 (ENSSHAG00000003830) #14	FOSB (ENSSHAG00000032198) #13	ENSSHAG00000003117 #12	PPP1R13L (ENSSHAG00000002660) #10	ERCC2 (ENSSHAG00000002169) #9	KLC3 (ENSSHAG00000001691) #8	CKM (ENSSHAG00000002132) #7	ENSSHAG00000002976	EXOC3L2 (ENSSHAG00000004086)	ENSSHAG00000004430	TRAPPC6A (ENSSHAG00000005027)
Opossum	MODERN SPECIES	3	ENSMODG00000038293	ENSMODG00000023670	ENSMODG00000021519	PGLYRP1 (ENSMODG00000021527) #36	ENSMODG00000021528 #35	ENSMODG00000050472 #34	NANOS2 (ENSMODG00000048699) #33	MYPOP (ENSMODG00000021531) #32	IRF2BP1 (ENSMODG00000021532) #31	FOXA3 (ENSMODG00000021533) #30	SYMPK (ENSMODG00000021534) #29	ENSMODG00000021535 #26	SIX5 (ENSMODG00000041693) #25	ENSMODG00000045504 #24	FBXO46 (ENSMODG00000028665) #23	QPCTL (ENSMODG00000021538) #22	SNRPD2 (ENSMODG00000021539) #21	GIPR (ENSMODG00000021540) #20	ENSMODG00000044027	EML2 (ENSMODG00000021541) #19	GPR4 (ENSMODG00000023661) #18	OPA3 (ENSMODG00000021542) #17	RTN2 (ENSMODG00000021544) #14	FOSB (ENSMODG00000021545) #13	ENSMODG00000021546 #12	ENSMODG00000041059 #11	PPP1R13L (ENSMODG00000021548) #10	ERCC2 (ENSMODG00000021549) #9	ENSMODG00000039168	KLK11 (ENSMODG00000006536)	KLK9 (ENSMODG00000006506)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	16	ENSOANG00000036797 #11	ENSOANG00000049944 #12	SNRPD2 (ENSOANG00000000813) #21	FOSB (ENSOANG00000047430) #13	ENSOANG00000038061 #14	ENSOANG00000043601 #14	ENSOANG00000050926	ENSOANG00000047387 #16	OPA3 (ENSOANG00000036874) #17	GPR4 (ENSOANG00000050364) #18	EML2 (ENSOANG00000013704) #19	ENSOANG00000040612	ENSOANG00000037211 #22	ENSOANG00000038729 #25	ENSOANG00000044527 #26	ENSOANG00000014943 #22	ENSOANG00000050748 #25	ENSOANG00000028407 #26	DMWD (ENSOANG00000037436) #27	ENSOANG00000042786 #28	SYMPK (ENSOANG00000036849) #29	FOXA3 (ENSOANG00000042207) #30	ENSOANG00000042668	NOVA2 (ENSOANG00000040576) #34	ENSOANG00000049441 #36	ENSOANG00000038949	PPP5C (ENSOANG00000011946)	ENSOANG00000036554	ENSOANG00000049385	ENSOANG00000041777	ENSOANG00000046092
Platypus	MODERN SPECIES	16	ENSOANG00000006354 #9	ENSOANG00000002088 #9	ENSOANG00000041617 #10	ENSOANG00000036797 #11	ENSOANG00000049944 #12	SNRPD2 (ENSOANG00000000813) #21	FOSB (ENSOANG00000047430) #13	ENSOANG00000038061 #14	ENSOANG00000043601 #14	ENSOANG00000050926	ENSOANG00000047387 #16	OPA3 (ENSOANG00000036874) #17	GPR4 (ENSOANG00000050364) #18	EML2 (ENSOANG00000013704) #19	ENSOANG00000040612	ENSOANG00000037211 #22	ENSOANG00000038729 #25	ENSOANG00000044527 #26	ENSOANG00000014943 #22	ENSOANG00000050748 #25	ENSOANG00000028407 #26	DMWD (ENSOANG00000037436) #27	ENSOANG00000042786 #28	SYMPK (ENSOANG00000036849) #29	FOXA3 (ENSOANG00000042207) #30	ENSOANG00000042668	NOVA2 (ENSOANG00000040576) #34	ENSOANG00000049441 #36	ENSOANG00000038949	PPP5C (ENSOANG00000011946)	ENSOANG00000036554
Sauria	ANCESTRAL SPECIES	34	ENSGT00940000159555	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b #7	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00390000011275 #12	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156070.b	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000153792.A	ENSGT01030000235120	ENSGT00390000001278.a	ENSGT00550000074807.c	ENSGT00940000161595	ENSGT00940000157514.a	ENSGT00940000162381	ENSGT00390000018436.b	ENSGT00940000166514	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308
Lepidosauria	ANCESTRAL SPECIES	39															ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000153792.A	ENSGT00550000074807.c	ENSGT00940000161595	ENSGT00940000157514.a	ENSGT00940000162381	ENSGT00390000018436.b	ENSGT00940000166514	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT01050000246816	ENSGT00940000159343	ENSGT00390000009409	ENSGT00940000160308	ENSGT00940000155288.b
Episquamata	ANCESTRAL SPECIES	7	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT01030000234555.a.b	ENSGT00390000017608 #21
Toxicofera	ANCESTRAL SPECIES	22	ENSGT00940000159883	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851 #24	ENSGT01030000234555.a.b
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000155288.b	ENSGT00940000160308.eb	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378.s.a.a.b	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237.b #25	ENSGT00950000185426	ENSGT00940000158292.a.e	ENSGT00570000080851 #24	ENSGT01030000234555.a.b
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378.s.a.a.b.a	ENSGT01050000246816	ENSGT00940000160378.s.a.a.b.b	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237.b #25	ENSGT00940000180177	ENSGT00940000162237.a #25	ENSGT00570000080851 #24	ENSGT01030000234555.a.b	ENSGT00390000017608 #21
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378.s.a.a.b.a	ENSGT01050000246816	ENSGT00940000160378.s.a.a.b.b	ENSGT00940000160378.s.b	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT00940000153792.A	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000180177	ENSGT00940000162237.a #25	ENSGT01030000234555.a.b	ENSGT00390000017608 #21	ENSGT00940000161745.d	ENSGT00940000158785	ENSGT00950000182980.a.b.a.a.a
Eastern brown snake	MODERN SPECIES	77	ENSPTXG00000012442	EIF3K (ENSPTXG00000012439)	ACTN4 (ENSPTXG00000012365)	ENSPTXG00000012363	ENSPTXG00000012361	ECH1 (ENSPTXG00000012357)	HNRNPL (ENSPTXG00000012356)	ENSPTXG00000017255	ENSPTXG00000017251	ENSPTXG00000017244	SIRT2 (ENSPTXG00000017240)	NFKBIB (ENSPTXG00000017236)	SARS2 (ENSPTXG00000017130)	ENSPTXG00000017124	FBXO46 (ENSPTXG00000017123) #23	QPCTL (ENSPTXG00000016820) #22	CCDC61 (ENSPTXG00000016815) #35	NOVA2 (ENSPTXG00000016809) #34	MYPOP (ENSPTXG00000016806) #32	IRF2BP1 (ENSPTXG00000016804) #31	ENSPTXG00000016802	SYMPK (ENSPTXG00000016761) #29	DMWD (ENSPTXG00000016737) #27	ENSPTXG00000016734	SIX5 (ENSPTXG00000016732) #25	ENSPTXG00000016729	ENSPTXG00000016727	SNRPD2 (ENSPTXG00000016725) #21	HIF3A (ENSPTXG00000016722)	PPP5C (ENSPTXG00000016719)	ENSPTXG00000016715
Mainland tiger snake	MODERN SPECIES	559																QPCTL (ENSNSUG00000017401) #22	NANOS2 (ENSNSUG00000017398) #33	NOVA2 (ENSNSUG00000017397) #34	MYPOP (ENSNSUG00000017396) #32	IRF2BP1 (ENSNSUG00000017394) #31	ENSNSUG00000017393	SYMPK (ENSNSUG00000017317) #29
Blue-lipped sea krait	MODERN SPECIES	3486															FBXO46 (ENSLLTG00000004413) #23	QPCTL (ENSLLTG00000004460) #22	CCDC61 (ENSLLTG00000006036) #35	NANOS2 (ENSLLTG00000006045) #33
Indian cobra	MODERN SPECIES	11	ENSNNAG00000015628	ENSNNAG00000015639	ENSNNAG00000015648	ENSNNAG00000015667	ENSNNAG00000015675	ENSNNAG00000015721	HNRNPL (ENSNNAG00000015748)	ENSNNAG00000015799	ENSNNAG00000015826	ENSNNAG00000015848	SIRT2 (ENSNNAG00000015878)	NFKBIB (ENSNNAG00000016134)	SARS2 (ENSNNAG00000016160)	ENSNNAG00000016340	FBXO46 (ENSNNAG00000016374) #23	QPCTL (ENSNNAG00000016428) #22	ENSNNAG00000016438 #35	NOVA2 (ENSNNAG00000016444) #34	ENSNNAG00000016452	MYPOP (ENSNNAG00000016459) #32	IRF2BP1 (ENSNNAG00000016466) #31	ENSNNAG00000016474	ENSNNAG00000016484 #29	DMWD (ENSNNAG00000016502) #27	DMPK (ENSNNAG00000016522) #26	ENSNNAG00000016566 #29	ENSNNAG00000016585 #25	ENSNNAG00000016590	ENSNNAG00000016595	ENSNNAG00000016598	SNRPD2 (ENSNNAG00000016603) #21
Lizard	MODERN SPECIES	547																ENSACAG00000003661 #22
Laterata	ANCESTRAL SPECIES	17	ENSGT00940000155288.b	ENSGT00940000160308	ENSGT00390000009409	ENSGT00940000159343	ENSGT00940000160378	ENSGT00940000159610	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000166514	ENSGT00390000018436.b	ENSGT00940000162381	ENSGT00940000157514.a	ENSGT00940000161595	ENSGT01030000235120	ENSGT00940000153792.A	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00940000158292.a.e	ENSGT00570000080851 #24	ENSGT01030000234555.a.b	ENSGT00390000017608 #21
Argentine black and white tegu	MODERN SPECIES	59	EIF3K (ENSSMRG00000015080)	ACTN4 (ENSSMRG00000015081)	ENSSMRG00000015082	LGALS4 (ENSSMRG00000015083)	ECH1 (ENSSMRG00000015084)	HNRNPL (ENSSMRG00000015085)	ENSSMRG00000015086	ENSSMRG00000015087	ENSSMRG00000015246	SIRT2 (ENSSMRG00000015247)	NFKBIB (ENSSMRG00000015249)	ENSSMRG00000015251	SARS2 (ENSSMRG00000015252)	ENSSMRG00000015255	FBXO46 (ENSSMRG00000015257) #23	QPCTL (ENSSMRG00000015258) #22	CCDC61 (ENSSMRG00000015259) #35	NANOS2 (ENSSMRG00000015261) #33	NOVA2 (ENSSMRG00000015264) #34	MYPOP (ENSSMRG00000015265) #32	IRF2BP1 (ENSSMRG00000015268) #31	ENSSMRG00000015300	SYMPK (ENSSMRG00000015301) #29	DMWD (ENSSMRG00000015307) #27	DMPK (ENSSMRG00000015308) #26	SIX5 (ENSSMRG00000015310) #25	ENSSMRG00000015311	ENSSMRG00000015316	SNRPD2 (ENSSMRG00000015318) #21	ENSSMRG00000015320	HIF3A (ENSSMRG00000015322)
Common wall lizard	MODERN SPECIES	16	ECH1 (ENSPMRG00000012178)	HNRNPL (ENSPMRG00000012182)	ENSPMRG00000012186	ENSPMRG00000012190	ENSPMRG00000012196	ENSPMRG00000012199	SIRT2 (ENSPMRG00000012202)	NFKBIB (ENSPMRG00000012209)	ENSPMRG00000012216	ENSPMRG00000012225	ENSPMRG00000012284	ENSPMRG00000012287	ENSPMRG00000012296	ENSPMRG00000012318	FBXO46 (ENSPMRG00000012326) #23	QPCTL (ENSPMRG00000012336) #22	CCDC61 (ENSPMRG00000012345) #35	NANOS2 (ENSPMRG00000012351) #33	NOVA2 (ENSPMRG00000008480) #34	ENSPMRG00000008493	MYPOP (ENSPMRG00000008500) #32	IRF2BP1 (ENSPMRG00000008505) #31	ENSPMRG00000008509	SYMPK (ENSPMRG00000008517) #29	DMWD (ENSPMRG00000008538) #27	ENSPMRG00000008551 #26	ENSPMRG00000008574 #25	ENSPMRG00000008581	ENSPMRG00000008593 #24	ENSPMRG00000008612	ENSPMRG00000008617 #21
tuatara	MODERN SPECIES	800													SAMD12 (ENSSPUG00000011689)	ENSSPUG00000011679	EXT1 (ENSSPUG00000011651)	ENSSPUG00000011643 #22	MED30 (ENSSPUG00000011634)	SLC30A8 (ENSSPUG00000011606)	RAD21 (ENSSPUG00000011584)	UTP23 (ENSSPUG00000011572)	EIF3H (ENSSPUG00000011563)
Archelosauria	ANCESTRAL SPECIES	33	ENSGT00940000160551 #10	ENSGT00950000182970.C #9	ENSGT00950000182772.A.a.a.b #7	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01090000261113	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156070.b	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #21	ENSGT00940000167604
Cryptodira	ANCESTRAL SPECIES	35	ENSGT01030000234613.b.b	ENSGT01090000261113	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156070.b	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00390000010750.b	ENSGT00390000000190	ENSGT00940000156783	ENSGT00940000157969	ENSGT00940000161850	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00950000185426	ENSGT01030000234555.a.b	ENSGT00390000017608 #21	ENSGT00940000167604
Testudinoidea	ANCESTRAL SPECIES	30	ENSGT00950000182970.C #9	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156070.b	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000161006.l.a #36	ENSGT00940000161006.l.b #36	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000162237 #25	ENSGT00950000185426	ENSGT01030000234555.a.b
Emydidae	ANCESTRAL SPECIES	77	ENSGT00650000093443.x	ENSGT00940000162258.v	ENSGT00390000012948.a	ENSGT00390000008756	ENSGT00940000163913	ENSGT00940000160551 #10	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000153887.B #19	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000161006.l.a.b #36	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203
painted turtle	MODERN SPECIES	1215													EML2 (ENSCPBG00000004855) #19	ENSCPBG00000004691	FBXO46 (ENSCPBG00000004665) #23	QPCTL (ENSCPBG00000004646) #22	ENSCPBG00000004638 #36
Three-toed box turtle	MODERN SPECIES	252	ENSTMTG00000007039	ENSTMTG00000007035	PPP1R13L (ENSTMTG00000006938) #10	ENSTMTG00000006907	ENSTMTG00000006897	CKM (ENSTMTG00000006864) #7	ENSTMTG00000006854	ENSTMTG00000006830	EXOC3L2 (ENSTMTG00000006808)	ENSTMTG00000006798	FOSB (ENSTMTG00000006785) #13	ENSTMTG00000006752 #14	EML2 (ENSTMTG00000003755) #19	ENSTMTG00000003421	ENSTMTG00000003409 #23	QPCTL (ENSTMTG00000003398) #22	ENSTMTG00000003368	NOVA2 (ENSTMTG00000003357) #34	MYPOP (ENSTMTG00000003346) #32	IRF2BP1 (ENSTMTG00000003331) #31	ENSTMTG00000008031	SYMPK (ENSTMTG00000007982) #29	DMWD (ENSTMTG00000007911) #27	ENSTMTG00000007894	ENSTMTG00000007873	SNRPD2 (ENSTMTG00000007862) #21	ENSTMTG00000007849	HIF3A (ENSTMTG00000007833)	PPP5C (ENSTMTG00000007809)	PTGIR (ENSTMTG00000007799)	GNG8 (ENSTMTG00000007787)
Testudinidae	ANCESTRAL SPECIES	36	ENSGT00940000167306	ENSGT01030000234877	ENSGT00950000182772.A.a.a.b #7	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000156265.x.b.a.a.b	ENSGT01100000263552.h.b.s.a.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156070.b	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000161006.l.a #36	ENSGT00940000162008	ENSGT00940000161006.l.b #36	ENSGT00940000154133.B #35	ENSGT00950000183135.A.a #33	ENSGT00940000161740 #34	ENSGT00860000136302	ENSGT00450000040421 #32	ENSGT00940000162120 #31	ENSGT00940000166203	ENSGT00390000017045 #29	ENSGT00390000007686.a #27	ENSGT00940000162019 #26	ENSGT00940000180177	ENSGT00940000162237 #25
Goode s thornscrub tortoise	MODERN SPECIES	134	MARK4 (ENSGEVG00005014914)	EXOC3L2 (ENSGEVG00005014812)	ENSGEVG00005014723	ENSGEVG00005014700	FOSB (ENSGEVG00005014621) #13	ENSGEVG00005014552 #14	ENSGEVG00005014505 #14	ENSGEVG00005014415	VASP (ENSGEVG00005014375) #16	OPA3 (ENSGEVG00005014359) #17	GPR4 (ENSGEVG00005014339) #18	EML2 (ENSGEVG00005010764) #19	ENSGEVG00005009904	ENSGEVG00005009827	FBXO46 (ENSGEVG00005009811) #23	QPCTL (ENSGEVG00005009703) #22	ENSGEVG00005009649 #36	PRLHR (ENSGEVG00005009601)	ENSGEVG00005009560 #36	ENSGEVG00005009334 #36	CCDC61 (ENSGEVG00005009259) #35	ENSGEVG00005009198 #33	NOVA2 (ENSGEVG00005009144) #34	MYPOP (ENSGEVG00005009011) #32	IRF2BP1 (ENSGEVG00005008960) #31	ENSGEVG00005008917	ENSGEVG00005008883	ENSGEVG00005008841	SYMPK (ENSGEVG00005008656) #29	DMWD (ENSGEVG00005008598) #27	DMPK (ENSGEVG00005008534) #26
Abingdon island giant tortoise	MODERN SPECIES	2009	ENSCABG00000008040	CKM (ENSCABG00000008042) #7	MARK4 (ENSCABG00000008045)	EXOC3L2 (ENSCABG00000008050)	ENSCABG00000008051	ENSCABG00000008052	ENSCABG00000008054	ENSCABG00000008055	FOSB (ENSCABG00000008056) #13	ENSCABG00000008057 #14	ENSCABG00000008059	ENSCABG00000008061 #16	ENSCABG00000008063	EML2 (ENSCABG00000008161) #19	ENSCABG00000013274	QPCTL (ENSCABG00000013296) #22	ENSCABG00000013500 #36	ENSCABG00000013501 #36	PRLHR (ENSCABG00000013502)	ENSCABG00000013503 #36	CCDC61 (ENSCABG00000013504) #35	ENSCABG00000013505	ENSCABG00000013507 #33	NOVA2 (ENSCABG00000013508) #34	MYPOP (ENSCABG00000013509) #32	ENSCABG00000013510	IRF2BP1 (ENSCABG00000013511) #31	ENSCABG00000013512	SYMPK (ENSCABG00000013513) #29	DMWD (ENSCABG00000013516) #27	ENSCABG00000013518 #26
Archosauria	ANCESTRAL SPECIES	62	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275 #12	ENSGT00940000160551 #10	ENSGT00950000182970.C #9	ENSGT00950000182772.A.a.a.b #7	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT01090000261113	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22
Aves	ANCESTRAL SPECIES	62	ENSGT00940000157454	ENSGT00650000093443.x	ENSGT00940000162258.z	ENSGT00390000011275 #12	ENSGT00940000160551 #10	ENSGT00950000182970.C #9	ENSGT00950000182772.A.a.a.b #7	ENSGT01030000234877	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22
Neognathae	DUPLICATION
Neognathae	ANCESTRAL SPECIES																	ENSGT00390000003107.b.g #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00390000003107.b.g #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00390000003107.b.g #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00390000003107.b.g #22
Turkey	MODERN SPECIES	554																ENSMGAG00000021004 #22
Neognathae	ANCESTRAL SPECIES	65									ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22
Neognathae_b	ANCESTRAL SPECIES	43	ENSGT00940000159792.C	ENSGT00550000075103	ENSGT00940000153792.A	ENSGT00940000161595	ENSGT00940000157514.a	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22
Passeriformes	ANCESTRAL SPECIES	74							ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22
Passeriformes_d	ANCESTRAL SPECIES	71							ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22
Passeriformes_g	ANCESTRAL SPECIES	58	ENSGT00940000159256	ENSGT00940000159112.b	ENSGT00390000005826.a.a	ENSGT00390000002548	ENSGT00940000158344.b	ENSGT00390000014682	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22
Passeroidea	ANCESTRAL SPECIES	60	ENSGT00940000159256	ENSGT00940000159112.b	ENSGT00390000005826.a.a	ENSGT00390000002548	ENSGT00940000158344.b	ENSGT00390000014682	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	90	ENSTGUG00000022424	ENSTGUG00000019023	ENSTGUG00000028954	ENSTGUG00000028171	ENSTGUG00000018913	ENSTGUG00000020962	ENSTGUG00000022571	ENSTGUG00000022044	ENSTGUG00000023141	ENSTGUG00000019740	ENSTGUG00000022191 #13	ENSTGUG00000028322	ENSTGUG00000026297 #17	ENSTGUG00000029438	FBXO46 (ENSTGUG00000029559) #23	ENSTGUG00000025499 #22	ENSTGUG00000021178	ENSTGUG00000023076	ENSTGUG00000029511	ENSTGUG00000025665	ENSTGUG00000024556	ENSTGUG00000029576	ENSTGUG00000022495	ENSTGUG00000026939	MRPS12 (ENSTGUG00000016491)	ENSTGUG00000027465	ENSTGUG00000021348
Zebra finch	MODERN SPECIES	90	ENSTGUG00000028463	ENSTGUG00000026521	ENSTGUG00000023185	ENSTGUG00000029586	ENSTGUG00000026943	ENSTGUG00000028656	ENSTGUG00000028622	ENSTGUG00000026946	ENSTGUG00000022867	ENSTGUG00000022886	ENSTGUG00000028095 #13	ENSTGUG00000027110 #14	ENSTGUG00000018974 #16	ENSTGUG00000029604 #17	ENSTGUG00000020070	ENSTGUG00000020383 #22	ENSTGUG00000027646	ENSTGUG00000027343	ENSTGUG00000028606	ENSTGUG00000019908	ENSTGUG00000026374	ENSTGUG00000022003	ENSTGUG00000019354	SYCN (ENSTGUG00000029525)	ENSTGUG00000025269	ENSTGUG00000022145	ENSTGUG00000020470	ENSTGUG00000023990
Neognathae_c	ANCESTRAL SPECIES	45	ENSGT00940000159792.C	ENSGT00550000075103	ENSGT00940000153792.A	ENSGT00940000161595	ENSGT00940000157514.a	ENSGT01030000234642.a.b.b.d.b.d	ENSGT00940000159610	ENSGT00940000160378	ENSGT00940000159555	ENSGT01030000234613.b.b	ENSGT00940000160358 #13	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT00530000064222.a #23	ENSGT00390000003107.b.h #22	ENSGT00940000157189	ENSGT00390000005773	ENSGT00950000183059.b.b	ENSGT00940000161512
Kakapo	MODERN SPECIES	71	PAK4 (ENSSHBG00005001125)	MRPS12 (ENSSHBG00005018776)	SARS2 (ENSSHBG00005001124)	NFKBIB (ENSSHBG00005018760)	SIRT2 (ENSSHBG00005018744)	HNRNPL (ENSSHBG00005018724)	ECH1 (ENSSHBG00005018716)	MARK4 (ENSSHBG00005018679)	EXOC3L2 (ENSSHBG00005018658)	FOSB (ENSSHBG00005018651) #13	ENSSHBG00005018647 #14	ENSSHBG00005018643 #16	OPA3 (ENSSHBG00005018640) #17	ENSSHBG00005018634	FBXO46 (ENSSHBG00005018628) #23	QPCTL (ENSSHBG00005018624) #22	AKT2 (ENSSHBG00005018621)	C19orf47 (ENSSHBG00005018611)	PLD3 (ENSSHBG00005018603)	HIPK4 (ENSSHBG00005018571)	LTBP4 (ENSSHBG00005018518)	SPTBN4 (ENSSHBG00005015713)	BLVRB (ENSSHBG00005015555)	ACTN4 (ENSSHBG00005015546)	EIF3K (ENSSHBG00005015536)
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	48							EXOC3L2 (ENSACCG00020016691)	ENSACCG00020016697	ENSACCG00020016699 #13	ENSACCG00020016706 #14	ENSACCG00020016707	ENSACCG00020016713 #16	OPA3 (ENSACCG00020016719) #17	ENSACCG00020016724	ENSACCG00020016727 #23	ENSACCG00020016730 #22	ENSACCG00020016737	ENSACCG00020016744 #13	ENSACCG00020016748 #14	ENSACCG00020016752	ENSACCG00020016757 #23	ENSACCG00020016762 #22	ENSACCG00020016766	C19orf47 (ENSACCG00020016772)	ENSACCG00020016776
Golden eagle	MODERN SPECIES	48	EXOC3L2 (ENSACCG00020016691)	ENSACCG00020016697	ENSACCG00020016699 #13	ENSACCG00020016706 #14	ENSACCG00020016707	ENSACCG00020016713 #16	OPA3 (ENSACCG00020016719) #17	ENSACCG00020016724	ENSACCG00020016727 #23	ENSACCG00020016730 #22	ENSACCG00020016737	ENSACCG00020016744 #13	ENSACCG00020016748 #14	ENSACCG00020016752	ENSACCG00020016757 #23	ENSACCG00020016762 #22	ENSACCG00020016766	C19orf47 (ENSACCG00020016772)	ENSACCG00020016776
Galloanserae	ANCESTRAL SPECIES																	ENSGT00390000003107.b.h #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00390000003107.b.h #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00390000003107.b.h #22
Turkey	MODERN SPECIES	827																ENSMGAG00000019555 #22
Anura	ANCESTRAL SPECIES	86	ENSGT00940000161740 #34	ENSGT01030000234613.b.b	ENSGT00940000159555	ENSGT00950000182772.A.a.a.b #7	ENSGT00950000182970.C #9	ENSGT00940000160551 #10	ENSGT00450000040362 #11	ENSGT00940000160358 #13	ENSGT00940000166395	ENSGT00940000160599 #14	ENSGT00940000156765 #16	ENSGT00390000009795 #17	ENSGT01100000263537.b.b.c.a.a #18	ENSGT00940000153887.B #19	ENSGT00530000064222.a #23	ENSGT00390000003107.b #22	ENSGT00940000161006.b #36	ENSGT00390000017608 #21	ENSGT00940000175813	ENSGT00940000158785	ENSGT01050000244902.b.d	ENSGT01100000263497.D	ENSGT00390000017583	ENSGT00940000159485	ENSGT00970000193421.A	ENSGT01030000234635.a.b.a.b.b.a.b
Leishan spiny toad	MODERN SPECIES	12	ENSLLEG00000024989	VASP (ENSLLEG00000025032) #16	OPA3 (ENSLLEG00000025207) #17	GPR4 (ENSLLEG00000025247) #18	EML2 (ENSLLEG00000025283) #19	ENSLLEG00000025452	ENSLLEG00000025522	ENSLLEG00000025546	ENSLLEG00000025576	ENSLLEG00000025619	ENSLLEG00000025687	ENSLLEG00000025765	ENSLLEG00000025800	ENSLLEG00000025854	FBXO46 (ENSLLEG00000025901) #23	QPCTL (ENSLLEG00000025916) #22	ENSLLEG00000025969 #36	ENSLLEG00000026008 #36	SNRPD2 (ENSLLEG00000026048) #21	ENSLLEG00000026124	ENSLLEG00000026147	ENSLLEG00000026307	ENSLLEG00000027489	PTGIR (ENSLLEG00000027509)	GNG8 (ENSLLEG00000027593)	FKRP (ENSLLEG00000027613)	SLC1A5 (ENSLLEG00000027633)	ENSLLEG00000027768	AP2S1 (ENSLLEG00000027801)	ENSLLEG00000027953	ENSLLEG00000027996
Frog	MODERN SPECIES	8	exoc3l2 (ENSXETG00000040252)	mark4 (ENSXETG00000019104)	ENSXETG00000037947	ckm (ENSXETG00000019108) #7	ercc2 (ENSXETG00000018229) #9	ppp1r13l (ENSXETG00000018235) #10	ENSXETG00000039831 #11	fosb (ENSXETG00000035471) #13	rtn2 (ENSXETG00000024454) #14	opa3 (ENSXETG00000018240) #17	gpr4 (ENSXETG00000033328) #18	vasp (ENSXETG00000018239) #16	eml1 (ENSXETG00000018242) #19	gipr (ENSXETG00000018255)	fbxo46 (ENSXETG00000047788) #23	qpctl (ENSXETG00000018261) #22	pglyrp1 (ENSXETG00000018262) #36	snrpd2 (ENSXETG00000002173) #21	ENSXETG00000018263	meiosin (ENSXETG00000048668)	ppp5c (ENSXETG00000018265)	ptgir (ENSXETG00000018270)	dact3 (ENSXETG00000037153)	fkrp (ENSXETG00000018274)	slc1a5 (ENSXETG00000018275)	ap2s1 (ENSXETG00000018283)	arhgap35 (ENSXETG00000018284)	atp11c (ENSXETG00000018290)	mcf2 (ENSXETG00000018322)	f9 (ENSXETG00000003472)	fgf13 (ENSXETG00000037165)
Coelacanth	MODERN SPECIES	324	CKM (ENSLACG00000014633) #7	ENSLACG00000022312	ENSLACG00000014371	ERCC2 (ENSLACG00000014155) #9	PPP1R13L (ENSLACG00000014022) #10	ENSLACG00000013798 #11	ENSLACG00000013574	ENSLACG00000013449	FOSB (ENSLACG00000013070) #13	VASP (ENSLACG00000011786) #16	OPA3 (ENSLACG00000011561) #17	GPR4 (ENSLACG00000010500) #18	EML2 (ENSLACG00000009810) #19	ENSLACG00000007720	FBXO46 (ENSLACG00000007162) #23	qpctla (ENSLACG00000006756) #22	PGLYRP1 (ENSLACG00000006458) #36	foxg1a (ENSLACG00000006063)	SNRPD2 (ENSLACG00000004720) #21	ENSLACG00000003614	ENSLACG00000001795
Actinopterygii	ANCESTRAL SPECIES	847																ENSGT00390000003107.b #22	ENSGT00940000166238
Neopterygii	ANCESTRAL SPECIES	167																ENSGT00390000003107.b #22	ENSGT00940000166238	ENSGT00940000156119	ENSGT01080000257562	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.a.b.a.a	ENSGT01050000244902.b.d	ENSGT00940000164695	ENSGT00940000160599 #14	ENSGT00940000165900	ENSGT00940000159399	ENSGT00970000193421.A
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	82	ENSGT00940000154133.B #35	ENSGT00940000160033	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00530000063583.a.a.b	ENSGT00940000159183	ENSGT00940000175813	ENSGT00390000003107.b.i #22	ENSGT00390000003107.b.j #22	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT01080000257562	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000162930	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Osteoglossiformes	ANCESTRAL SPECIES	202		ENSGT00940000154133.B #35	ENSGT00940000160033	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183.bb	ENSGT00940000175813	ENSGT00390000003107.b.i #22	ENSGT00940000158292.b	ENSGT00940000166238.b.a	ENSGT00940000156119	ENSGT01080000257562	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00390000018039	ENSGT00940000155666.d	ENSGT00940000157454	ENSGT00390000015102.a.a	ENSGT00950000182980.a.b.a.a.a	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
P. kingsleyae	MODERN SPECIES	139	ENSPKIG00000011534	ENSPKIG00000011432	ENSPKIG00000011350	ENSPKIG00000011321	clasrp (ENSPKIG00000011266)	znf296 (ENSPKIG00000011230)	ENSPKIG00000011153	fosb (ENSPKIG00000011100) #13	si:ch211-160d20.3 (ENSPKIG00000011066)	ttc9b (ENSPKIG00000011044)	MAP3K10 (ENSPKIG00000010997)	ENSPKIG00000010977	ENSPKIG00000010957	ENSPKIG00000010934	ENSPKIG00000010897	QPCTL (ENSPKIG00000010856) #22	six9 (ENSPKIG00000010841)	six5 (ENSPKIG00000010823)	ENSPKIG00000010746	tbcb (ENSPKIG00000010679)	ENSPKIG00000010652	clptm1 (ENSPKIG00000010548)	ENSPKIG00000010483	ENSPKIG00000010447	RELB (ENSPKIG00000010400)	mrpl28 (ENSPKIG00000010370)	gemin7 (ENSPKIG00000010356)	bmp16 (ENSPKIG00000010340)	ppp1r37 (ENSPKIG00000010325)	CALM3 (ENSPKIG00000010298)	PTGIR (ENSPKIG00000010282)
Asian bonytongue	MODERN SPECIES	1	itpkcb (ENSSFOG00015029484)	zgc:153119 (ENSSFOG00015006244)	snrpa (ENSSFOG00015006256)	ENSSFOG00015006284	ENSSFOG00015027974	ENSSFOG00015028256	clasrp (ENSSFOG00015006361)	ENSSFOG00015006337	znf296 (ENSSFOG00015030515)	ENSSFOG00015006406	fosb (ENSSFOG00015006443) #13	si:ch211-160d20.3 (ENSSFOG00015031471)	ttc9b (ENSSFOG00015027054)	MAP3K10 (ENSSFOG00015006515)	SIPA1L3 (ENSSFOG00015006579)	QPCTL (ENSSFOG00015006707) #22	six9 (ENSSFOG00015030551)	six5 (ENSSFOG00015006762)	tbcb (ENSSFOG00015006769)	ENSSFOG00015006784	ENSSFOG00015006775	clptm1 (ENSSFOG00015006801)	ENSSFOG00015006850	mrpl28 (ENSSFOG00015006866)	gemin7 (ENSSFOG00015029458)	bmp16 (ENSSFOG00015026725)	ppp1r37 (ENSSFOG00015006918)	ENSSFOG00015006993	PTGIR (ENSSFOG00015007014)	ppm1na (ENSSFOG00015007029)	rtn2a (ENSSFOG00015007054)
Clupeocephala	ANCESTRAL SPECIES	244												ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00940000175813	ENSGT00570000080851 #24	ENSGT00390000003107.b.i #22	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00940000163093.a.a	ENSGT00390000004396.g	ENSGT00940000165592.b	ENSGT00940000159524	ENSGT00940000158090	ENSGT00390000012955
Euteleosteomorpha	ANCESTRAL SPECIES	133					ENSGT00950000183107.a.b.b	ENSGT00940000162488.b.a	ENSGT00950000182832.D.b	ENSGT00950000183031.B	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a	ENSGT00940000155902.d	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00940000175813	ENSGT00570000080851 #24	ENSGT00390000003107.b.i #22	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g	ENSGT00940000165592.b	ENSGT00940000159524	ENSGT00940000158090	ENSGT00390000012955	ENSGT00940000159656.b
Protacanthopterygii	ANCESTRAL SPECIES	11	ENSGT00950000183097.a.a.a.f.a.b	ENSGT00390000012030.b.a	ENSGT00950000183107.a.b.b	ENSGT00940000162488.b.a	ENSGT00950000182832.D.b	ENSGT00950000183031.B	ENSGT00940000167119	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a	ENSGT00940000155902.d	ENSGT00990000203619.B.a.b	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00940000175813	ENSGT00570000080851 #24	ENSGT00390000003107.b.i #22	ENSGT01080000257562	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000159399.c.a	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g	ENSGT00940000165592.b	ENSGT00940000159524	ENSGT00940000158090	ENSGT00390000012955	ENSGT00940000154769.pb.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	590									ENSGT00950000183097.a.a.a.f.a.a.b	ENSGT00940000155902.d.c.b	ENSGT00990000203619.B.a.b.b	ENSGT00940000154133.B.f #35	ENSGT00940000160033.d.d	ENSGT00940000159183.v.b	ENSGT00940000175813	ENSGT00390000003107.b.i.a #22	ENSGT00940000177260.a	ENSGT01080000257562.a	ENSGT00610000087474	ENSGT00940000166868.a.f	ENSGT00940000164695.b.f	ENSGT00940000160599.t #14	ENSGT00940000159399.c.a.b	ENSGT00940000156028.t.e
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000164237.g	ENSGT00390000011425.A.d	ENSGT00940000156017.eb.a.b	ENSGT00950000183107.a.b.b.q.a	ENSGT00940000162488.b.a.b	ENSGT00950000182832.D.b.gc	ENSGT00950000183031.B	ENSGT00940000161737	ENSGT00950000183097.a.a.a.f.a.a.b	ENSGT00940000155902.d.c.b	ENSGT00990000203619.B.a.b.b	ENSGT00940000154133.B.f #35	ENSGT00940000160033.d.d	ENSGT00940000159183.v.b	ENSGT00940000175813	ENSGT00390000003107.b.i.a #22	ENSGT00940000177260.a	ENSGT01080000257562.a	ENSGT00610000087474	ENSGT00940000166868.a.f	ENSGT00940000164695.b.f	ENSGT00940000160599.t #14	ENSGT00940000159399.c.a.b	ENSGT00940000156028.t.e	ENSGT00940000163093.a.a	ENSGT00390000004396.g.f	ENSGT00940000159524.d	ENSGT00940000158090	ENSGT00390000012955.e	ENSGT00940000154769.pb.b.b	ENSGT01090000260005.a.b.a.b.b.j.b
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000164237.g	ENSGT00390000011425.A.d	ENSGT00940000156017.eb.a.b	ENSGT00950000183107.a.b.b.q.a	ENSGT00940000162488.b.a.b	ENSGT00950000182832.D.b.gc	ENSGT00950000183031.B	ENSGT00940000162863	ENSGT00950000183097.a.a.a.f.a.a.b	ENSGT00940000155902.d.c.b	ENSGT00990000203619.B.a.b.b	ENSGT00940000154133.B.f #35	ENSGT00940000160033.d.d	ENSGT00940000159183.v.b	ENSGT00940000175813	ENSGT00390000003107.b.i.a #22	ENSGT00940000177260.a	ENSGT01080000257562.a	ENSGT00610000087474	ENSGT00940000166868.a.f	ENSGT00940000164695.b.f	ENSGT00940000160599.t #14	ENSGT00940000159399.c.a.b	ENSGT00940000156028.t.e	ENSGT00940000163093.a.a	ENSGT00390000004396.g.f	ENSGT00940000159524.d	ENSGT00940000158090	ENSGT00390000012955.e	ENSGT00940000154769.pb.b.a.a	ENSGT01090000260005.a.b.a.b.b.j.b
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00940000164237.g	ENSGT00390000011425.A.d	ENSGT00940000156017.eb.a.b	ENSGT00950000183107.a.b.b.q.a	ENSGT00940000162488.b.a.b	ENSGT00950000182832.D.b.gc	ENSGT00950000183031.B	ENSGT00940000162863	ENSGT00950000183097.a.a.a.f.a.a.b	ENSGT00940000155902.d.c.b	ENSGT00990000203619.B.a.b.b	ENSGT00940000154133.B.f #35	ENSGT00940000160033.d.d	ENSGT00940000159183.v.b	ENSGT00940000175813	ENSGT00390000003107.b.i.a #22	ENSGT00940000177260.a	ENSGT01080000257562.a	ENSGT00610000087474	ENSGT00940000166868.a.f	ENSGT00940000164695.b.f	ENSGT00940000160599.t #14	ENSGT00940000159399.c.a.b	ENSGT00940000156028.t.e	ENSGT00940000163093.a.a	ENSGT00390000004396.g.f	ENSGT00940000159524.d	ENSGT00940000158090	ENSGT00390000012955.e	ENSGT00940000154769.pb.b.a.a	ENSGT01090000260005.a.b.a.b.b.j.b
Chinook salmon	MODERN SPECIES	33	agtr2 (ENSOTSG00005009260)	apool (ENSOTSG00005009261)	ENSOTSG00005009267	ENSOTSG00005009440	sh3bgrl (ENSOTSG00005009441)	BRWD3 (ENSOTSG00005009448)	TENT5D (ENSOTSG00005012086)	chmp1b (ENSOTSG00005012087)	rraga (ENSOTSG00005012090)	PLS3 (ENSOTSG00005012096)	ENSOTSG00005012255	ccdc61 (ENSOTSG00005012260) #35	ENSOTSG00005012263	ENSOTSG00005012266	ENSOTSG00005012268	QPCTL (ENSOTSG00005012271) #22	ENSOTSG00005012273	ENSOTSG00005012275	si:ch211-191j22.3 (ENSOTSG00005012276)	ENSOTSG00005012279	ENSOTSG00005012280	ppm1nb (ENSOTSG00005012282)	ENSOTSG00005012284	rtn2b (ENSOTSG00005012287) #14	RAB4B (ENSOTSG00005012292)	nectin3b (ENSOTSG00005012297)	ENSOTSG00005012298	ENSOTSG00005012299	ppme1 (ENSOTSG00005012301)	ucp2 (ENSOTSG00005012305)	dnajb13 (ENSOTSG00005012307)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005050392	ENSOKIG00005050425	SH3BGRL (ENSOKIG00005050429)	BRWD3 (ENSOKIG00005050476)	TENT5D (ENSOKIG00005050501)	CHMP1B (ENSOKIG00005050507)	rraga (ENSOKIG00005050509)	ENSOKIG00005050517	PLS3 (ENSOKIG00005050534)	ENSOKIG00005050561	ENSOKIG00005050564	ENSOKIG00005050567	ccdc61 (ENSOKIG00005050572) #35	ENSOKIG00005050576	ENSOKIG00005050579	QPCTL (ENSOKIG00005050582) #22	ENSOKIG00005050588	si:ch211-191j22.3 (ENSOKIG00005050591)	ENSOKIG00005050597	ppm1nb (ENSOKIG00005050602)	rtn2b (ENSOKIG00005050608) #14	RAB4B (ENSOKIG00005050612)	nectin3b (ENSOKIG00005050622)	ENSOKIG00005050627	ppme1 (ENSOKIG00005050644)	ucp2 (ENSOKIG00005050659)	dnajb13 (ENSOKIG00005011642)	mrpl48 (ENSOKIG00005011662)	RAB6A (ENSOKIG00005011698)	gjd1a (ENSOKIG00005011802)	nfkbib (ENSOKIG00005011818)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000046585	ENSOMYG00000046589	ENSOMYG00000046683	ENSOMYG00000056162	ENSOMYG00000046780	ENSOMYG00000070732	ENSOMYG00000003212	ENSOMYG00000003271	ENSOMYG00000003338	ENSOMYG00000003740	ENSOMYG00000003928	ENSOMYG00000003945	ccdc61 (ENSOMYG00000003992) #35	ENSOMYG00000004009	ENSOMYG00000004026	ENSOMYG00000004045 #22	ENSOMYG00000004057	si:ch211-191j22.3 (ENSOMYG00000055570)	ENSOMYG00000004110	ppm1nb (ENSOMYG00000004146)	rtn2b (ENSOMYG00000004155) #14	ENSOMYG00000059158	ENSOMYG00000004185	nectin3b (ENSOMYG00000004233)	ENSOMYG00000004260	PPME1 (ENSOMYG00000004387)	ucp2b (ENSOMYG00000004487)	dnajb13 (ENSOMYG00000004506)	mrpl48 (ENSOMYG00000004555)	rab6a (ENSOMYG00000004683)	gjd1a (ENSOMYG00000048609)
Salmo	ANCESTRAL SPECIES	13	ENSGT00530000063666.a.gb	ENSGT00940000164237.g	ENSGT00390000011425.A.d	ENSGT00940000156017.eb.a.b	ENSGT00950000183107.a.b.b.q.a	ENSGT00940000162488.b.a.b	ENSGT00950000182832.D.b.gc	ENSGT00950000183031.B	ENSGT00940000161737	ENSGT00950000183097.a.a.a.f.a.a.b	ENSGT00940000155902.d.c.b	ENSGT00990000203619.B.a.b.b	ENSGT00940000154133.B.f #35	ENSGT00940000160033.d.d	ENSGT00940000159183.v.b	ENSGT00390000003107.b.i.a #22	ENSGT01080000257562.a	ENSGT00610000087474	ENSGT00940000166868.a.f	ENSGT00940000164695.b.f	ENSGT00940000160599.t #14	ENSGT00940000159399.c.a.b	ENSGT00940000156028.t.e	ENSGT00940000163093.a.a	ENSGT00390000004396.g.f	ENSGT00940000159524.d	ENSGT00940000158090	ENSGT00390000012955.e	ENSGT00940000154769.pb.b.b	ENSGT01090000260005.a.b.a.b.b.j.b	ENSGT00940000159120.e.d
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000009440	ENSSSAG00000009423	ENSSSAG00000009395	ENSSSAG00000084290	ENSSSAG00000008163	ENSSSAG00000008096	ENSSSAG00000008058	rraga (ENSSSAG00000007986)	ENSSSAG00000007958	ENSSSAG00000005102	ENSSSAG00000004889	ccdc61 (ENSSSAG00000004839) #35	ENSSSAG00000004828	ENSSSAG00000119766	ENSSSAG00000004806	ENSSSAG00000004799 #22	si:ch211-191j22.3 (ENSSSAG00000095612)	ENSSSAG00000101297	ppm1nb (ENSSSAG00000004767)	rtn2b (ENSSSAG00000004754) #14	ENSSSAG00000004654	nectin3b (ENSSSAG00000098499)	ENSSSAG00000004621	PPME1 (ENSSSAG00000004579)	UCP2 (ENSSSAG00000004557)	dnajb13 (ENSSSAG00000004541)	mrpl48 (ENSSSAG00000004508)	rab6a (ENSSSAG00000004359)	ENSSSAG00000004321	ENSSSAG00000088660	ENSSSAG00000004311
River trout	MODERN SPECIES	6	apool (ENSSTUG00000023431)	ENSSTUG00000023313	ENSSTUG00000023305	sh3bgrl (ENSSTUG00000023208)	BRWD3 (ENSSTUG00000022462)	TENT5D (ENSSTUG00000022443)	chmp1b (ENSSTUG00000021989)	rraga (ENSSTUG00000021952)	nup62l (ENSSTUG00000021905)	PLS3 (ENSSTUG00000019482)	ATRX (ENSSTUG00000019370)	ENSSTUG00000019364	ccdc61 (ENSSTUG00000019310) #35	ENSSTUG00000019296	ENSSTUG00000019282	QPCTL (ENSSTUG00000019277) #22	ENSSTUG00000019267	si:ch211-191j22.3 (ENSSTUG00000019261)	ENSSTUG00000019253	ppm1nb (ENSSTUG00000019240)	rtn2b (ENSSTUG00000019227) #14	RAB4B (ENSSTUG00000019190)	nectin3b (ENSSTUG00000019176)	ENSSTUG00000019167	ucp2 (ENSSTUG00000019131)	dnajb13 (ENSSTUG00000018399)	mrpl48 (ENSSTUG00000018371)	rab6a (ENSSTUG00000018273)	gjd1a (ENSSTUG00000018252)	nfkbib (ENSSTUG00000018239)	ENSSTUG00000018214
Huchen	MODERN SPECIES	2	ENSHHUG00000016973	ENSHHUG00000016976	ENSHHUG00000016979	sh3bgrl (ENSHHUG00000016983)	ENSHHUG00000017069	ENSHHUG00000017162	chmp1b (ENSHHUG00000017165)	rraga (ENSHHUG00000017302)	ENSHHUG00000017324	PLS3 (ENSHHUG00000017418)	ENSHHUG00000017923	ENSHHUG00000017954	ccdc61 (ENSHHUG00000017958) #35	ENSHHUG00000017970	ENSHHUG00000017977	QPCTL (ENSHHUG00000017984) #22	ENSHHUG00000017991	ENSHHUG00000017994	si:ch211-191j22.3 (ENSHHUG00000017995)	ENSHHUG00000018000	ppm1nb (ENSHHUG00000018010)	rtn2b (ENSHHUG00000018012) #14	RAB4B (ENSHHUG00000018014)	nectin3b (ENSHHUG00000018074)	ENSHHUG00000018085
Salmoninae	ANCESTRAL SPECIES	38	ENSGT00390000011425.A.d	ENSGT00940000156017.eb.a.b	ENSGT00950000183107.a.b.b.q.a	ENSGT00940000162488.b.a.b	ENSGT00950000182832.D.b.gc	ENSGT00950000183031.B	ENSGT00940000161737	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a.a	ENSGT00940000155902.d.c.a	ENSGT00990000203619.B.a.b.a	ENSGT00940000154133.B.e #35	ENSGT00940000160033.d.c	ENSGT00940000159183.v.a	ENSGT00570000080851 #24	ENSGT00390000003107.b.i.b #22	ENSGT00940000177260.b	ENSGT01080000257562.b	ENSGT00940000166868.a.e	ENSGT00940000164695.b.e	ENSGT00940000160599.s #14	ENSGT00940000159399.c.a.a	ENSGT00940000156028.t.f	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g.e	ENSGT00940000165592.b	ENSGT00940000159524.c	ENSGT00390000012955.f	ENSGT00940000154769.pb.a	ENSGT01090000260005.a.b.a.b.b.j.a
Huchen	MODERN SPECIES	104	ENSHHUG00000018917	sh3bgrl (ENSHHUG00000018931)	ENSHHUG00000018982	TENT5D (ENSHHUG00000019177)	chmp1b (ENSHHUG00000019183)	rraga (ENSHHUG00000019315)	ENSHHUG00000019337	CNGA2 (ENSHHUG00000019376)	pls3 (ENSHHUG00000019584)	ENSHHUG00000020617	CYSLTR2 (ENSHHUG00000020696)	ccdc61 (ENSHHUG00000020700) #35	ENSHHUG00000020713	ENSHHUG00000020721	ENSHHUG00000020732 #24	QPCTL (ENSHHUG00000020754) #22	ENSHHUG00000020800	ENSHHUG00000020808	ENSHHUG00000020814	ppm1nb (ENSHHUG00000020819)	rtn2b (ENSHHUG00000020835) #14	RAB4B (ENSHHUG00000020848)	nectin3b (ENSHHUG00000020949)	diablob (ENSHHUG00000020956)
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00940000164237.h	ENSGT00390000011425.A.c	ENSGT00940000156017.eb.a.a	ENSGT00950000183107.a.b.b.q.b	ENSGT00940000162488.b.a.a	ENSGT00950000182832.D.b.fc	ENSGT00940000167119	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a.a	ENSGT00940000155902.d.c.a	ENSGT00990000203619.B.a.b.a	ENSGT00940000154133.B.e #35	ENSGT00940000160033.d.c	ENSGT00940000159183.v.a	ENSGT00570000080851 #24	ENSGT00390000003107.b.i.b #22	ENSGT01080000257562.b	ENSGT00940000166868.a.e	ENSGT00940000164695.b.e	ENSGT00940000160599.s #14	ENSGT00940000159399.c.a.a	ENSGT00940000156028.t.f	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g.e	ENSGT00940000165592.b	ENSGT00940000159524.c	ENSGT00390000012955.f	ENSGT00940000154769.pb.a	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000159120.e.c
Salmo	ANCESTRAL SPECIES	17	ENSGT00940000164237.h	ENSGT00390000011425.A.c	ENSGT00940000156017.eb.a.a	ENSGT00950000183107.a.b.b.q.b	ENSGT00940000162488.b.a.a	ENSGT00950000182832.D.b.fc	ENSGT00940000167119	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a.a	ENSGT00940000155902.d.c.a	ENSGT00990000203619.B.a.b.a	ENSGT00940000154133.B.e #35	ENSGT00940000160033.d.c	ENSGT00940000159183.v.a	ENSGT00570000080851 #24	ENSGT00390000003107.b.i.b #22	ENSGT01080000257562.b	ENSGT00940000166868.a.e	ENSGT00940000164695.b.e	ENSGT00940000160599.s #14	ENSGT00940000159399.c.a.a	ENSGT00940000156028.t.f	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g.e	ENSGT00940000165592.b	ENSGT00940000159524.c	ENSGT00390000012955.f	ENSGT00940000154769.pb.a	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000159120.e.c
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000005224	ENSSSAG00000005357	ENSSSAG00000091180	ENSSSAG00000006449	ENSSSAG00000102978	ENSSSAG00000006534	ENSSSAG00000084306	ENSSSAG00000006706	ENSSSAG00000039468	ENSSSAG00000004862	ENSSSAG00000106596	ccdc61 (ENSSSAG00000044264) #35	ENSSSAG00000044275	ENSSSAG00000044286	bhmg1 (ENSSSAG00000044298) #24	ENSSSAG00000044304 #22	ENSSSAG00000094380	ENSSSAG00000004781	ppm1n (ENSSSAG00000044339)	rtn2b (ENSSSAG00000044374) #14	ENSSSAG00000100820	ENSSSAG00000094912	nectin3b (ENSSSAG00000090297)	diablob (ENSSSAG00000044449)	ENSSSAG00000044461	ENSSSAG00000044470	ENSSSAG00000044487	ucp3 (ENSSSAG00000044557)	UCP2 (ENSSSAG00000044701)	mrpl48 (ENSSSAG00000044753)	ENSSSAG00000111731
River trout	MODERN SPECIES	10	ENSSTUG00000032150	ENSSTUG00000032128	sh3bgrl (ENSSTUG00000032098)	BRWD3 (ENSSTUG00000029632)	TENT5D (ENSSTUG00000029575)	chmp1b (ENSSTUG00000029498)	ENSSTUG00000029472	CNGA2 (ENSSTUG00000029087)	pls3 (ENSSTUG00000025373)	ENSSTUG00000025266	ATRX (ENSSTUG00000023778)	ENSSTUG00000023738	ccdc61 (ENSSTUG00000023723) #35	ENSSTUG00000023713	ENSSTUG00000023708	QPCTL (ENSSTUG00000023694) #22	ENSSTUG00000023689	ENSSTUG00000023650	ppm1nb (ENSSTUG00000023615)	rtn2b (ENSSTUG00000023611) #14	RAB4B (ENSSTUG00000023597)	nectin3b (ENSSTUG00000023587)	diablob (ENSSTUG00000023574)	or92a1 (ENSSTUG00000023565)	ppme1 (ENSSTUG00000023495)	ucp3 (ENSSTUG00000023453)	ucp2 (ENSSTUG00000023441)	mrpl48 (ENSSTUG00000023393)	RAB6A (ENSSTUG00000023351)	gjd1a (ENSSTUG00000023344)	nfkbib (ENSSTUG00000023334)
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT01050000244888.b.a.c.a.a	ENSGT00530000063666.a.fb	ENSGT00940000164237.h	ENSGT00390000011425.A.c	ENSGT00940000156017.eb.a.a	ENSGT00950000183107.a.b.b.q.b	ENSGT00940000162488.b.a.a	ENSGT00950000182832.D.b.fc	ENSGT00940000161737	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a.a	ENSGT00940000155902.d.c.a	ENSGT00990000203619.B.a.b.a	ENSGT00940000159183.v.a	ENSGT00570000080851 #24	ENSGT00390000003107.b.i.b #22	ENSGT01080000257562.b	ENSGT00940000166868.a.e	ENSGT00940000164695.b.e	ENSGT00940000160599.s #14	ENSGT00940000159399.c.a.a	ENSGT00940000156028.t.f	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g.e	ENSGT00940000165592.b	ENSGT00940000159524.c	ENSGT00390000012955.f.b	ENSGT00940000154769.pb.b.b	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000159120.e.c
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000002776	ENSOMYG00000002755	ENSOMYG00000002693	ENSOMYG00000002657	ENSOMYG00000002607	ENSOMYG00000002340	ENSOMYG00000002324	ENSOMYG00000061040	ENSOMYG00000002159	ENSOMYG00000001824	ENSOMYG00000001789	ENSOMYG00000045485	ENSOMYG00000045484	ENSOMYG00000045475	ENSOMYG00000045465	ENSOMYG00000045457 #22	ENSOMYG00000045454	ENSOMYG00000045451	ppm1nb (ENSOMYG00000045447)	rtn2b (ENSOMYG00000045439) #14	ENSOMYG00000045435	ENSOMYG00000059167	nectin3b (ENSOMYG00000045430)	diablob (ENSOMYG00000045427)	ENSOMYG00000045425	ENSOMYG00000045418	ucp3 (ENSOMYG00000045407)	ucp2a (ENSOMYG00000045400)	mrpl48 (ENSOMYG00000045394)	ENSOMYG00000045369	gjd1a (ENSOMYG00000045360)
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT01000000217261.a	ENSGT01050000244888.b.a.c.a.a	ENSGT00530000063666.a.fb	ENSGT00940000164237.h	ENSGT00390000011425.A.c	ENSGT00940000156017.eb.a.a	ENSGT00950000183107.a.b.b.q.b	ENSGT00940000162488.b.a.a	ENSGT00950000182832.D.b.fc	ENSGT00940000161737	ENSGT00940000155374.g.a	ENSGT00950000183097.a.a.a.f.a.a.a	ENSGT00940000155902.d.c.a	ENSGT00940000159183.v.a	ENSGT00570000080851 #24	ENSGT00390000003107.b.i.b #22	ENSGT01080000257562.b	ENSGT00940000166868.a.e	ENSGT00940000164695.b.e	ENSGT00940000160599.s #14	ENSGT00940000159399.c.a.a	ENSGT00940000156028.t.f	ENSGT00390000007237.s	ENSGT00940000163093.b	ENSGT00390000004396.g.e	ENSGT00940000165592.b	ENSGT00940000159524.c	ENSGT00390000012955.f.b	ENSGT00940000154769.pb.b.b	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000159120.e.c
Coho salmon	MODERN SPECIES	20	ENSOKIG00005027024	ENSOKIG00005027264	SH3BGRL (ENSOKIG00005027278)	BRWD3 (ENSOKIG00005027453)	TENT5D (ENSOKIG00005028714)	chmp1b (ENSOKIG00005028736)	ENSOKIG00005028840	CNGA2 (ENSOKIG00005028859)	pls3 (ENSOKIG00005028923)	ATRX (ENSOKIG00005029656)	ENSOKIG00005030543	ENSOKIG00005030562	ENSOKIG00005030581	ENSOKIG00005030592	ENSOKIG00005030616 #24	QPCTL (ENSOKIG00005030642) #22	ENSOKIG00005030678	ppm1nb (ENSOKIG00005030691)	rtn2b (ENSOKIG00005030707) #14	RAB4B (ENSOKIG00005030721)	nectin3b (ENSOKIG00005030748)	diablob (ENSOKIG00005030764)	ENSOKIG00005030800	PPME1 (ENSOKIG00005030854)	ucp3 (ENSOKIG00005030937)	ucp2 (ENSOKIG00005030961)	mrpl48 (ENSOKIG00005030984)	rab6a (ENSOKIG00005031044)	gjd1a (ENSOKIG00005031123)	nfkbib (ENSOKIG00005031144)	ENSOKIG00005031155
Chinook salmon	MODERN SPECIES	23	ENSOTSG00005009046	sh3bgrl (ENSOTSG00005047699)	BRWD3 (ENSOTSG00005047698)	TENT5D (ENSOTSG00005047694)	chmp1b (ENSOTSG00005047693)	nup62l (ENSOTSG00005047691)	CNGA2 (ENSOTSG00005047688)	PLS3 (ENSOTSG00005047468)	sec61b (ENSOTSG00005047458)	ENSOTSG00005047457	ATRX (ENSOTSG00005047455)	ENSOTSG00005047454	ENSOTSG00005047453	ENSOTSG00005047452	ENSOTSG00005047451 #24	QPCTL (ENSOTSG00005047449) #22	ENSOTSG00005047448	ENSOTSG00005047447	ppm1nb (ENSOTSG00005047446)	rtn2b (ENSOTSG00005047445) #14	RAB4B (ENSOTSG00005047443)	nectin3b (ENSOTSG00005047440)	diablob (ENSOTSG00005047439)	ENSOTSG00005047438	ppme1 (ENSOTSG00005047436)	ucp3 (ENSOTSG00005047433)	ucp2 (ENSOTSG00005047432)	mrpl48 (ENSOTSG00005047431)	rab6a (ENSOTSG00005047424)	gjd1a (ENSOTSG00005047423)	nfkbib (ENSOTSG00005047422)
Northern pike	MODERN SPECIES	6	sh3bgrl (ENSELUG00000009941)	ENSELUG00000028905	BRWD3 (ENSELUG00000009859)	TENT5D (ENSELUG00000026169)	chmp1b (ENSELUG00000009678)	rraga (ENSELUG00000009655)	ENSELUG00000009623	CNGA2 (ENSELUG00000009608)	pls3 (ENSELUG00000009594)	ENSELUG00000000351	ENSELUG00000009509	ccdc61 (ENSELUG00000009476) #35	ENSELUG00000009424	ENSELUG00000009408	ENSELUG00000009386 #24	QPCTL (ENSELUG00000001370) #22	ENSELUG00000009334	si:ch211-191j22.3 (ENSELUG00000031664)	ENSELUG00000009289	ppm1nb (ENSELUG00000009265)	rtn2b (ENSELUG00000009226) #14	RAB4B (ENSELUG00000031488)	nectin3b (ENSELUG00000009183)	diablob (ENSELUG00000009163)	or92a1 (ENSELUG00000009106)	ppme1 (ENSELUG00000009072)	ucp3 (ENSELUG00000009017)	ucp2 (ENSELUG00000008990)	dnajb13 (ENSELUG00000008963)	mrpl48 (ENSELUG00000008942)	rab6a (ENSELUG00000008876)
Otomorpha	ANCESTRAL SPECIES	628															ENSGT00570000080851 #24	ENSGT00390000003107.b.i #22	ENSGT00940000177260	ENSGT01080000257533
Otophysi	ANCESTRAL SPECIES	37	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00730000111146	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00940000175813	ENSGT00570000080851 #24	ENSGT00390000003107.b.i #22	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000161428	ENSGT00940000160457.a	ENSGT00940000168097	ENSGT01030000234640.b	ENSGT00950000183048.b.a.c	ENSGT00950000183023.A.h	ENSGT00950000183023.B.m.a	ENSGT00950000183023.B.m.b
Characiphysae	ANCESTRAL SPECIES	23	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00730000111146	ENSGT00390000002096	ENSGT00940000165259.a	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00940000175813	ENSGT00390000003107.b.i #22	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.b.j	ENSGT00940000161428	ENSGT00940000160457.a	ENSGT00510000046499	ENSGT01100000263522.B.b.l	ENSGT00940000167612.b	ENSGT00950000183048.b.b.c	ENSGT00950000183023.A.g.b
Channel catfish	MODERN SPECIES	9	c6 (ENSIPUG00000004907)	rgs7bpb (ENSIPUG00000004920)	rnf180 (ENSIPUG00000004929)	htr1ab (ENSIPUG00000004938)	ndr1 (ENSIPUG00000004944)	eif4ebp1 (ENSIPUG00000004953)	ENSIPUG00000004961	ANK1 (ENSIPUG00000004975)	FTSJ1 (ENSIPUG00000005052)	ENSIPUG00000005137	RICTOR (ENSIPUG00000005150)	lifrb (ENSIPUG00000005236)	ccdc61 (ENSIPUG00000005261) #35	ENSIPUG00000005300	bhmg1 (ENSIPUG00000005313)	qpctl (ENSIPUG00000005330) #22	ENSIPUG00000005354	ENSIPUG00000005371	ENSIPUG00000005378	ENSIPUG00000005404	ppm1n (ENSIPUG00000005418)	rtn2 (ENSIPUG00000005455) #14	nectin3b (ENSIPUG00000005476)	diablob (ENSIPUG00000005491)	nsg2 (ENSIPUG00000005503)	cpeb4 (ENSIPUG00000005518)	Bod1 (ENSIPUG00000005588)	STC2 (ENSIPUG00000005604)	BNIP1 (ENSIPUG00000005648)	crebrf (ENSIPUG00000005676)	ATP6V0E1 (ENSIPUG00000005718)
Characiphysae_b	ANCESTRAL SPECIES	21	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00730000111146	ENSGT00390000002096	ENSGT00940000165259.a	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00390000003107.b.i #22	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.b.j	ENSGT00940000161428	ENSGT00940000160457.a	ENSGT00510000046499	ENSGT01100000263522.B.b.l	ENSGT00940000167612.b	ENSGT00950000183048.b.b.c	ENSGT01030000234640.a.a.e
Characoidei	ANCESTRAL SPECIES	31	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b	ENSGT00730000111146	ENSGT00390000002096	ENSGT00940000165259.a	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00390000003107.b.i #22	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.b.j	ENSGT00940000161428	ENSGT00940000160457.a	ENSGT00940000168097
Red-bellied piranha	MODERN SPECIES	317	c7b (ENSPNAG00000015586)	c6 (ENSPNAG00000004954)	rgs7bpb (ENSPNAG00000015734)	rnf180b (ENSPNAG00000015805)	htr1ab (ENSPNAG00000015841)	ENSPNAG00000015861	eif4ebp1 (ENSPNAG00000015895)	ANK1 (ENSPNAG00000003412)	ftsj1 (ENSPNAG00000016330)	ENSPNAG00000016456	lifrb (ENSPNAG00000016562)	lifrb (ENSPNAG00000016610)	ccdc61 (ENSPNAG00000016698) #35	ENSPNAG00000016710	ENSPNAG00000016717	QPCTL (ENSPNAG00000016729) #22	ENSPNAG00000016745	si:ch211-191j22.3 (ENSPNAG00000016767)	ENSPNAG00000016790	ppm1nb (ENSPNAG00000016802)	rtn2b (ENSPNAG00000016860) #14	nectin3b (ENSPNAG00000003451)	diablob (ENSPNAG00000016886)	ENSPNAG00000016899	b9d2 (ENSPNAG00000003452)	ENSPNAG00000016944	ENSPNAG00000016957	cbr1l (ENSPNAG00000016977)
Mexicana tetra	MODERN SPECIES	5	c7b (ENSAMXG00000009027)	c6 (ENSAMXG00000009003)	rgs7bpb (ENSAMXG00000031535)	rnf180b (ENSAMXG00000008983)	htr1ab (ENSAMXG00000024875)	ndr1 (ENSAMXG00000034479)	eif4ebp1 (ENSAMXG00000033622)	ANK1 (ENSAMXG00000042031)	ftsj1 (ENSAMXG00000037663)	ENSAMXG00000002115	lifrb (ENSAMXG00000032048)	ccdc61 (ENSAMXG00000002319) #35	ENSAMXG00000041790	ENSAMXG00000027386	ENSAMXG00000035293	ENSAMXG00000039452 #22	ENSAMXG00000026106	si:ch211-191j22.3 (ENSAMXG00000036825)	ENSAMXG00000002478	ppm1nb (ENSAMXG00000039563)	rtn2b (ENSAMXG00000042351) #14	nectin3b (ENSAMXG00000002520)	diablob (ENSAMXG00000041613)	b9d2 (ENSAMXG00000038790)	ENSAMXG00000002558	ENSAMXG00000002607	cbr1l (ENSAMXG00000033906)	ENSAMXG00000033580	ENSAMXG00000002637	ENSAMXG00000041922	ENSAMXG00000041289
Electric eel	MODERN SPECIES	6						ENSEEEG00000002970	ENSEEEG00000002972	ENSEEEG00000002973	ENSEEEG00000002974	ENSEEEG00000002977	ftsj1 (ENSEEEG00000002980)	RICTOR (ENSEEEG00000002994)	lifrb (ENSEEEG00000003035)	ccdc61 (ENSEEEG00000003041) #35	ENSEEEG00000003043	ENSEEEG00000003045 #22	ENSEEEG00000003046	si:ch211-191j22.3 (ENSEEEG00000003048)	ENSEEEG00000003049	ppm1nb (ENSEEEG00000003052)	rtn2b (ENSEEEG00000003053) #14	nectin3b (ENSEEEG00000003054)	diablob (ENSEEEG00000003056)	b9d2 (ENSEEEG00000003058)	ENSEEEG00000003059	ENSEEEG00000003060	ENSEEEG00000003062	ENSEEEG00000003064	ENSEEEG00000003067	ENSEEEG00000003069	defbl1 (ENSEEEG00000003074)
Cyprinoidei	ANCESTRAL SPECIES	54	ENSGT00390000010075	ENSGT00940000165107.A	ENSGT00390000009130.b.d.b	ENSGT00940000156804.b	ENSGT00940000156814	ENSGT00940000153725.b.c	ENSGT00950000182909.a.e	ENSGT00940000154484.B.a.a	ENSGT00940000163919.b	ENSGT00940000159932.b	ENSGT00940000155760.t.b.c	ENSGT00730000111146	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00570000080851 #24	ENSGT00390000003107.b.i #22	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.a.a.a.a	ENSGT00940000163093.a.a.a.b.a	ENSGT00940000163093.a.a.a.b.b	ENSGT00940000161428	ENSGT00940000160457.a	ENSGT00510000046499.y	ENSGT00950000183023.A.h.d.b.b	ENSGT00950000183023.B.m.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	207	ENSGT00940000165107.A.d	ENSGT00940000156804.b.b	ENSGT00940000156814.a	ENSGT00940000153725.b.c.b	ENSGT00950000182909.a.e.a	ENSGT00940000154484.B.a.a.s.b	ENSGT00940000163919.b.b	ENSGT00940000159932.b.b	ENSGT00940000155760.t.b.c.b	ENSGT00730000111146.d	ENSGT00390000002096.g.b	ENSGT00940000165259.a.f	ENSGT00940000154133.B.g #35	ENSGT00940000160033.d.a	ENSGT00570000080851.c #24	ENSGT00390000003107.b.i.c #22	ENSGT01080000257533.a	ENSGT00610000087474.c	ENSGT00940000166868.a.a	ENSGT00940000164695.b.b	ENSGT00940000160599.q #14	ENSGT00940000156028.t.b	ENSGT00390000007237.s.b	ENSGT00950000183023.A.h.d.b.a.a.a	ENSGT00950000183023.A.h.d.b.a.a.b	ENSGT00950000183023.B.m.b.a	ENSGT00990000204702.a	ENSGT00940000163239.f	ENSGT00940000166571.b	ENSGT00390000016048	ENSGT00950000182944.A.a.b.a
Cyprininae_a	ANCESTRAL SPECIES	33	ENSGT00940000165107.A.d	ENSGT00940000156804.b.b	ENSGT00940000156814.a	ENSGT00950000182909.a.e.a	ENSGT00940000154484.B.a.a.s.b	ENSGT00940000163919.b.b	ENSGT00940000159932.b.b	ENSGT00940000155760.t.b.c.b	ENSGT00730000111146.d	ENSGT00390000002096.g.b	ENSGT00940000165259.a.f	ENSGT00940000154133.B.g #35	ENSGT00940000160033.d.a	ENSGT00940000155944.e.b	ENSGT00570000080851.c #24	ENSGT00390000003107.b.i.c #22	ENSGT01080000257533.a	ENSGT00610000087474.c	ENSGT00940000166868.a.a	ENSGT00940000164695.b.b	ENSGT00940000160599.q #14	ENSGT00940000156028.t.b	ENSGT00390000007237.s.b	ENSGT00940000163093.a.a.b	ENSGT00940000161428.f	ENSGT00940000160457.a.a	ENSGT00940000168097	ENSGT00950000183048.b.a.d.j	ENSGT00950000183023.A.h.d.b.a.a.a	ENSGT00950000183023.A.h.d.b.a.a.b	ENSGT00950000183023.B.m.b.a
Golden-line barbel	MODERN SPECIES	113	C6 (ENSSGRG00000047055)	rnf180b (ENSSGRG00000047176)	htr1ab (ENSSGRG00000047178)	ndr1 (ENSSGRG00000047180)	eif4ebp1 (ENSSGRG00000047181)	ANK1 (ENSSGRG00000047184)	ENSSGRG00000047192	ENSSGRG00000047193	ftsj1 (ENSSGRG00000047194)	ENSSGRG00000047200	lifrb (ENSSGRG00000047356)	ccdc61 (ENSSGRG00000047359) #35	ENSSGRG00000047361	ENSSGRG00000047362	ENSSGRG00000047364 #24	QPCTL (ENSSGRG00000047367) #22	ENSSGRG00000047370	si:ch211-191j22.3 (ENSSGRG00000047372)	ENSSGRG00000047373	ppm1nb (ENSSGRG00000047374)	rtn2b (ENSSGRG00000047375) #14	nectin3b (ENSSGRG00000047378)	diablob (ENSSGRG00000047380)	ENSSGRG00000047381	b9d2 (ENSSGRG00000047382)	ENSSGRG00000047383	ENSSGRG00000047385	ENSSGRG00000047418	ENSSGRG00000047419
Common carp reference	MODERN SPECIES	45	ENSCCRG00000032079	ghrb (ENSCCRG00000064776)	oxct1b (ENSCCRG00000010498)	ENSCCRG00000011078	ENSCCRG00000058122	rnf180b (ENSCCRG00000062640)	ndr1 (ENSCCRG00000037992)	ENSCCRG00000058976	ftsj1 (ENSCCRG00000046518)	ENSCCRG00000039490	lifrb (ENSCCRG00000039480)	ccdc61 (ENSCCRG00000039384) #35	ENSCCRG00000039381	ENSCCRG00000059011	ENSCCRG00000011232 #24	ENSCCRG00000011228 #22	ENSCCRG00000062053	si:ch211-191j22.3 (ENSCCRG00000058555)	ENSCCRG00000011221	ppm1nb (ENSCCRG00000011219)	rtn2b (ENSCCRG00000061235) #14	nectin3b (ENSCCRG00000022614)	diablob (ENSCCRG00000008992)	ENSCCRG00000076282	ENSCCRG00000001015	ENSCCRG00000008983	ENSCCRG00000067124	ENSCCRG00000056766	b9d2 (ENSCCRG00000063478)	ENSCCRG00000008975	cbr1l (ENSCCRG00000056610)
Cyprininae	ANCESTRAL SPECIES	144	ENSGT00940000156804.b.a	ENSGT00940000156814.b	ENSGT00940000153725.b.c.a	ENSGT00950000182909.a.e.b	ENSGT00940000154484.B.a.a.s.a	ENSGT00940000163919.b.a	ENSGT00940000159932.b.a	ENSGT00940000155760.t.b.c.a	ENSGT00730000111146.c	ENSGT00390000002096.g.a	ENSGT00940000165259.a.e	ENSGT00940000154133.B.h #35	ENSGT00940000160033.d.b	ENSGT00940000159183.ab	ENSGT00570000080851.d #24	ENSGT00390000003107.b.i.d #22	ENSGT01080000257533.b	ENSGT00610000087474.d	ENSGT00940000166868.a.b	ENSGT00940000164695.b.a	ENSGT00940000160599.r #14	ENSGT00940000156028.t.a	ENSGT00390000007237.s.a	ENSGT00940000163093.a.a.a.a	ENSGT00940000163093.a.a.a.b.a	ENSGT00940000163093.a.a.a.b.b	ENSGT00940000161428.e	ENSGT00940000160457.a.b	ENSGT00950000183048.b.a.d.i	ENSGT00950000183023.A.h.c.a.a	ENSGT00950000183023.A.h.c.b.a.a.a
Cyprininae_a	ANCESTRAL SPECIES	89	ENSGT00940000156804.b.a	ENSGT00940000156814.b	ENSGT00940000153725.b.c.a	ENSGT00950000182909.a.e.b	ENSGT00940000154484.B.a.a.s.a	ENSGT00940000163919.b.a	ENSGT00940000159932.b.a	ENSGT00940000155760.t.b.c.a	ENSGT00730000111146.c	ENSGT00390000002096.g.a	ENSGT00940000165259.a.e	ENSGT00940000154133.B.h #35	ENSGT00940000160033.d.b	ENSGT00940000159183.ab	ENSGT00570000080851.d #24	ENSGT00390000003107.b.i.d #22	ENSGT01080000257533.b	ENSGT00610000087474.d	ENSGT00940000166868.a.b	ENSGT00940000164695.b.a	ENSGT00940000160599.r #14	ENSGT00940000156028.t.a	ENSGT00390000007237.s.a	ENSGT00940000163093.a.a.a.a	ENSGT00940000163093.a.a.a.b.a	ENSGT00940000163093.a.a.a.b.b	ENSGT00940000161428.e	ENSGT00940000160457.a.b	ENSGT00950000183048.b.a.d.i	ENSGT00950000183023.A.h.c.a.a	ENSGT00950000183023.A.h.c.b.a.a.a
Golden-line barbel	MODERN SPECIES	144	oxct1b (ENSSGRG00000024966)	c7b (ENSSGRG00000024926)	ENSSGRG00000024919	rnf180b (ENSSGRG00000024917)	htr1ab (ENSSGRG00000024916)	ndr1 (ENSSGRG00000024915)	eif4ebp1 (ENSSGRG00000024914)	ENSSGRG00000024912	ENSSGRG00000024911	ENSSGRG00000024907	ftsj1 (ENSSGRG00000024898)	ENSSGRG00000024881	lifrb (ENSSGRG00000024869)	ccdc61 (ENSSGRG00000024866) #35	ENSSGRG00000024865	QPCTL (ENSSGRG00000024864) #22	si:ch211-191j22.3 (ENSSGRG00000024863)	ENSSGRG00000024862	ppm1nb (ENSSGRG00000024860)	nectin3b (ENSSGRG00000024858)
Common carp reference	MODERN SPECIES	38	ENSCCRG00000005229	ghrb (ENSCCRG00000005217)	oxct1b (ENSCCRG00000052819)	c7b (ENSCCRG00000004390)	rgs7bpb (ENSCCRG00000004319)	rnf180b (ENSCCRG00000011085)	ndr1 (ENSCCRG00000004305)	ENSCCRG00000037719	ftsj1 (ENSCCRG00000037770)	ENSCCRG00000039416	lifrb (ENSCCRG00000039393)	ccdc61 (ENSCCRG00000039477) #35	ENSCCRG00000039475	ENSCCRG00000039473	ENSCCRG00000055815 #24	ENSCCRG00000039471 #22	ENSCCRG00000066666	si:ch211-191j22.3 (ENSCCRG00000039469)	ENSCCRG00000039468	ppm1nb (ENSCCRG00000039467)	rtn2b (ENSCCRG00000053026) #14	nectin3b (ENSCCRG00000039464)	diablob (ENSCCRG00000039457)	ENSCCRG00000026914	ENSCCRG00000008906	ENSCCRG00000080655	ENSCCRG00000065299	or62b4 (ENSCCRG00000055223)	or62b5 (ENSCCRG00000080334)	or62a3 (ENSCCRG00000060080)	or62a1 (ENSCCRG00000011710)
Goldfish	MODERN SPECIES	40	ghrb (ENSCARG00000031258)	oxct1b (ENSCARG00000031279)	c7b (ENSCARG00000031471)	rgs7bpb (ENSCARG00000033209)	rnf180b (ENSCARG00000033243)	htr1ab (ENSCARG00000033290)	ndr1 (ENSCARG00000033304)	eif4ebp1 (ENSCARG00000033335)	ANK1 (ENSCARG00000033533)	ftsj1 (ENSCARG00000035891)	ENSCARG00000036055	lifrb (ENSCARG00000036854)	ENSCARG00000036906	ENSCARG00000036981	ENSCARG00000037000 #24	QPCTL (ENSCARG00000037014) #22	ENSCARG00000037032	si:ch211-191j22.3 (ENSCARG00000037047)	ENSCARG00000037073	ppm1nb (ENSCARG00000037098)	nectin3b (ENSCARG00000037129)	diablob (ENSCARG00000037185)	ENSCARG00000037201	b9d2 (ENSCARG00000037226)	ENSCARG00000037252	ENSCARG00000037308	ENSCARG00000037328	ENSCARG00000037351	ENSCARG00000037363	ENSCARG00000037383	or62b3 (ENSCARG00000037401)
Zebrafish	MODERN SPECIES	13	c7b (ENSDARG00000057121)	c6 (ENSDARG00000057113)	rgs7bpb (ENSDARG00000016742)	rnf180b (ENSDARG00000057101)	htr1ab (ENSDARG00000057098)	ndr1 (ENSDARG00000057096)	eif4ebp1 (ENSDARG00000043608)	ANK1 (ENSDARG00000074777)	ftsj1 (ENSDARG00000057089)	ENSDARG00000002020	lifrb (ENSDARG00000039863)	ccdc61 (ENSDARG00000062307) #35	ENSDARG00000002994	ENSDARG00000057039	ENSDARG00000094059 #24	ENSDARG00000062293 #22	ENSDARG00000092478	si:ch211-191j22.3 (ENSDARG00000095459)	ENSDARG00000057037	ppm1nb (ENSDARG00000057032)	rtn2b (ENSDARG00000057027) #14	nectin3b (ENSDARG00000006604)	diablob (ENSDARG00000014956)	ENSDARG00000105751	ENSDARG00000105735	ENSDARG00000105817	ENSDARG00000105741	ENSDARG00000105757	ENSDARG00000094819	ENSDARG00000105768	ENSDARG00000105798
Clupeiformes	ANCESTRAL SPECIES	18	ENSGT00940000154175	ENSGT00940000158694	ENSGT00940000166008	ENSGT00440000034259.b	ENSGT00940000154216.a	ENSGT00940000155453	ENSGT00940000153733.A	ENSGT00940000164751.b	ENSGT00940000153997.b.a.b.c.b	ENSGT00950000183202.b	ENSGT01040000240444.A.a.a.a.a.b	ENSGT00940000154133.B #35	ENSGT00940000160033.d	ENSGT00990000214195	ENSGT00940000175813	ENSGT00390000003107.b.i #22	ENSGT00940000177260	ENSGT01080000257533	ENSGT00610000087474	ENSGT00940000166868.a	ENSGT00940000164695.b	ENSGT00940000160599 #14	ENSGT00940000156028.t	ENSGT00390000007237.s	ENSGT00940000163093.a.a	ENSGT00940000164481.b.b.g	ENSGT00940000163093.b	ENSGT00940000161428	ENSGT00390000016213	ENSGT00390000004396.g	ENSGT00870000136506
Atlantic herring	MODERN SPECIES	24	RYR1 (ENSCHAG00000006784)	ncam1a (ENSCHAG00000008747)	ENSCHAG00000015711	ENSCHAG00000015732	ENSCHAG00000015755	ccdc90b (ENSCHAG00000015950)	alg8 (ENSCHAG00000015967)	guca1d (ENSCHAG00000016373)	dub (ENSCHAG00000016405)	rb1 (ENSCHAG00000016419)	LPAR6 (ENSCHAG00000016576)	ccdc61 (ENSCHAG00000016596) #35	ENSCHAG00000016626	ENSCHAG00000016639	ENSCHAG00000016648	QPCTL (ENSCHAG00000016655) #22	ENSCHAG00000016670	ENSCHAG00000016674	si:ch211-191j22.3 (ENSCHAG00000016680)	ENSCHAG00000016695	ppm1nb (ENSCHAG00000016773)	rtn2b (ENSCHAG00000016776) #14	nectin3b (ENSCHAG00000016784)	diablob (ENSCHAG00000016792)	ENSCHAG00000016797	ENSCHAG00000016807	b9d2 (ENSCHAG00000016816)	ENSCHAG00000016831	ENSCHAG00000016852	ENSCHAG00000016910	ENSCHAG00000017008
Osteoglossocephalai	ANCESTRAL SPECIES	82	ENSGT00940000160033	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00530000063583.a.a.b	ENSGT00940000159183	ENSGT00940000175813	ENSGT00390000003107.b.i #22	ENSGT00390000003107.b.j #22	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT01080000257562	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000162930	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260
Clupeocephala	ANCESTRAL SPECIES	117			ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00530000063583.a.a.b	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.a.b.a.a.e.b.a.a	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260	ENSGT00940000165900	ENSGT00940000159399
Otomorpha	ANCESTRAL SPECIES	116							ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000174677	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786	ENSGT00940000161966	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00950000183204.a.b	ENSGT00390000007968	ENSGT00940000156933.d.a	ENSGT00980000198620	ENSGT00390000006949
Otophysi	ANCESTRAL SPECIES	243	ENSGT00940000160551 #10	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000157165.e.a	ENSGT00390000010608	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000174677	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786
Characiphysae	ANCESTRAL SPECIES	66	ENSGT00940000160551 #10	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000157165.e.a	ENSGT00390000010608	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000174677	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000162283.b	ENSGT00940000154022.a.a	ENSGT00940000156734.b	ENSGT00390000004456	ENSGT00940000158268.a	ENSGT00440000037417.A
Characiphysae_b	ANCESTRAL SPECIES	72	ENSGT00940000160551 #10	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000157165.e.a	ENSGT00390000010608	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000174677	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000162283.b	ENSGT00940000154022.a.a	ENSGT00940000156734.b	ENSGT00390000004456	ENSGT00940000158268.a	ENSGT00440000037417.A
Characoidei	ANCESTRAL SPECIES	76	ENSGT00940000160551 #10	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000157165.e.a	ENSGT00390000010608	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000174677	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786	ENSGT00940000155568	ENSGT00940000165402	ENSGT00390000017790	ENSGT00940000158758	ENSGT00940000162283.b	ENSGT00940000154022.a.a	ENSGT00940000156734.b	ENSGT00390000004456	ENSGT00940000158268.a	ENSGT00440000037417.A
Red-bellied piranha	MODERN SPECIES	135					ENSPNAG00000019000	siae (ENSPNAG00000019007)	clasrp (ENSPNAG00000019075)	znf296 (ENSPNAG00000003573)	ENSPNAG00000019158	fosb (ENSPNAG00000019210) #13	si:ch211-160d20.3 (ENSPNAG00000019248)	ttc9b (ENSPNAG00000019267)	MAP3K10 (ENSPNAG00000019349)	ENSPNAG00000019365	SIPA1L3 (ENSPNAG00000019408)	qpctla (ENSPNAG00000019429) #22	six9 (ENSPNAG00000019447)	six5 (ENSPNAG00000019453)	tbcb (ENSPNAG00000019461)	yap1 (ENSPNAG00000019515)	ENSPNAG00000019548	arfgap2 (ENSPNAG00000019585)	ENSPNAG00000019630	pex16 (ENSPNAG00000019643)	ENSPNAG00000019654	large2 (ENSPNAG00000003607)	ENSPNAG00000019835	KIFC3 (ENSPNAG00000019956)	wt1b (ENSPNAG00000019996)	eif3m (ENSPNAG00000020059)	prrg4 (ENSPNAG00000020078)
Mexicana tetra	MODERN SPECIES	43	opa3 (ENSAMXG00000036325) #17	ppp1r13l (ENSAMXG00000004656) #10	TMEM91 (ENSAMXG00000004664)	exosc5 (ENSAMXG00000034946)	bckdha (ENSAMXG00000030349)	b3gat1a (ENSAMXG00000004678)	siae (ENSAMXG00000032392)	clasrp (ENSAMXG00000001136)	znf296 (ENSAMXG00000001129)	ENSAMXG00000032872	fosb (ENSAMXG00000037476) #13	si:ch211-160d20.3 (ENSAMXG00000034804)	ttc9b (ENSAMXG00000042123)	MAP3K10 (ENSAMXG00000015126)	SIPA1L3 (ENSAMXG00000031508)	qpctla (ENSAMXG00000015202) #22	six9 (ENSAMXG00000041788)	six5 (ENSAMXG00000015232)	tbcb (ENSAMXG00000038054)	yap1 (ENSAMXG00000015263)
Electric eel	MODERN SPECIES	190					ENSEEEG00000015856	siae (ENSEEEG00000015854)	clasrp (ENSEEEG00000015845)	ENSEEEG00000015842	ENSEEEG00000015841	ENSEEEG00000015840	fosb (ENSEEEG00000015837) #13	si:ch211-160d20.3 (ENSEEEG00000015836)	ttc9b (ENSEEEG00000015835)	MAP3K10 (ENSEEEG00000015820)	ENSEEEG00000015818	qpctla (ENSEEEG00000015786) #22	six9 (ENSEEEG00000015785)	six5 (ENSEEEG00000015784)	tbcb (ENSEEEG00000015783)	yap1 (ENSEEEG00000015782)	ENSEEEG00000015781	arfgap2 (ENSEEEG00000015744)	ENSEEEG00000015740	pex16 (ENSEEEG00000015735)	large2 (ENSEEEG00000015238)
Channel catfish	MODERN SPECIES	23	opa3 (ENSIPUG00000011714) #17	ppp1r13l (ENSIPUG00000011725) #10	TMEM91 (ENSIPUG00000011777)	Exosc5 (ENSIPUG00000011820)	bckdha (ENSIPUG00000011847)	b3gat1a (ENSIPUG00000011867)	siae (ENSIPUG00000011900)	clasrp (ENSIPUG00000011928)	znf296 (ENSIPUG00000011956)	ENSIPUG00000011968	fosb (ENSIPUG00000012056) #13	c4h19orf47 (ENSIPUG00000012092)	ttc9b (ENSIPUG00000012108)	map3k10 (ENSIPUG00000012119)	sipa1l3 (ENSIPUG00000012143)	qpctla (ENSIPUG00000012203) #22	six9 (ENSIPUG00000012212)	six5 (ENSIPUG00000012233)	tbcb (ENSIPUG00000012250)	yap1 (ENSIPUG00000012368)	cep126 (ENSIPUG00000012388)	arfgap2 (ENSIPUG00000012424)	ENSIPUG00000012466	pex16 (ENSIPUG00000012495)	large2 (ENSIPUG00000012569)	ENSIPUG00000012677	kifc3 (ENSIPUG00000012716)	wt1b (ENSIPUG00000012895)	eif3m (ENSIPUG00000012938)	prrg4 (ENSIPUG00000013041)	qser1 (ENSIPUG00000013066)
Cyprinoidei	ANCESTRAL SPECIES	10	ENSGT00390000009795 #17	ENSGT00940000160551 #10	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000157165.e.a	ENSGT00390000010608	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358.j #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786	ENSGT00390000013180	ENSGT00390000001927.a.a	ENSGT00530000064489	ENSGT00390000009140	ENSGT00940000153438.a.s	ENSGT00940000160199	ENSGT00940000159662.c.b	ENSGT00940000157667.c	ENSGT00940000158481.c	ENSGT00390000017249.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	30	ENSGT00940000155288.b.x.b.b	ENSGT00940000159883.c	ENSGT00390000009795.t #17	ENSGT00940000160551.b #10	ENSGT00950000183147.A.b.a.b	ENSGT00940000153348.C.g	ENSGT00530000063174.b.c	ENSGT00940000157165.e.a.b	ENSGT00940000153892.A.e	ENSGT00940000160667.a	ENSGT00940000166395.b	ENSGT00940000160358.j #13	ENSGT00390000005773.b	ENSGT00940000160518.h	ENSGT00940000159183.`b.b	ENSGT00390000003107.b.j.a #22	ENSGT00940000158292.b.b	ENSGT00940000166238.a.a	ENSGT00940000156119.b	ENSGT00510000046760.a.ab.g.b	ENSGT00390000013180.l	ENSGT00390000001927.a.a.e	ENSGT00530000064489.i	ENSGT00390000009140.a	ENSGT00940000153438.a.s.a.a	ENSGT00940000160199.b	ENSGT00940000159662.c.b.b	ENSGT00940000157667.c.a	ENSGT00940000158481.c.a	ENSGT00390000017249.f.c	ENSGT00940000154294.u
Goldfish	MODERN SPECIES	37	ryr1b (ENSCARG00000068568)	rasgrp4 (ENSCARG00000068500)	opa3 (ENSCARG00000068487) #17	ppp1r13l (ENSCARG00000068477) #10	TMEM91 (ENSCARG00000068464)	exosc5 (ENSCARG00000068451)	bckdha (ENSCARG00000068424)	b3gat1a (ENSCARG00000068400)	clasrp (ENSCARG00000068368)	znf296 (ENSCARG00000068332)	ENSCARG00000068309	fosb (ENSCARG00000068287) #13	si:ch211-160d20.3 (ENSCARG00000068259)	MAP3K10 (ENSCARG00000068241)	ENSCARG00000068126	qpctla (ENSCARG00000068101) #22	six9 (ENSCARG00000068093)	six5 (ENSCARG00000068083)	tbcb (ENSCARG00000068076)	yap1 (ENSCARG00000068036)	luzp2 (ENSCARG00000068020)	nucb2b (ENSCARG00000067885)	si:dkey-10o6.2 (ENSCARG00000067863)	nat10 (ENSCARG00000067705)	caprin1b (ENSCARG00000066643)	lmo2 (ENSCARG00000066588)	alx4b (ENSCARG00000066576)	tspan18b (ENSCARG00000066557)	cd82b (ENSCARG00000066549)	tp53i11b (ENSCARG00000066541)	ENSCARG00000066535
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00940000159883.c	ENSGT00390000009795.t #17	ENSGT00940000160551.b #10	ENSGT00950000183147.A.b.a.b	ENSGT00940000153348.C.g	ENSGT00530000063174.b.c	ENSGT00940000157165.e.a.b	ENSGT00940000153892.A.e	ENSGT00940000160667.a	ENSGT00940000166395.b	ENSGT00940000160358.j #13	ENSGT00390000005773.b	ENSGT00940000161494.h	ENSGT00940000160518.h	ENSGT00940000159183.`b.b	ENSGT00390000003107.b.j.a #22	ENSGT00940000158292.b.b	ENSGT00940000166238.a.a	ENSGT00940000156119.b	ENSGT00510000046760.a.ab.g.b	ENSGT00390000013180.k.b	ENSGT00390000001927.a.a.e	ENSGT00530000064489.i	ENSGT00390000009140.a	ENSGT00940000153438.a.s.a.a	ENSGT00940000160199.b	ENSGT00940000159662.c.b.b	ENSGT00940000157667.c.a	ENSGT00940000158481.c.a	ENSGT00390000017249.f.c	ENSGT00940000154294.u
Common carp reference	MODERN SPECIES	9	ENSCCRG00000030587	opa3 (ENSCCRG00000081683) #17	ppp1r13l (ENSCCRG00000036772) #10	TMEM91 (ENSCCRG00000036767)	exosc5 (ENSCCRG00000036757)	bckdha (ENSCCRG00000063296)	b3gat1a (ENSCCRG00000064741)	ENSCCRG00000073543	clasrp (ENSCCRG00000027716)	ENSCCRG00000078635	fosb (ENSCCRG00000079517) #13	si:ch211-160d20.3 (ENSCCRG00000062192)	ttc9b (ENSCCRG00000072946)	ENSCCRG00000008845	ENSCCRG00000072352	qpctla (ENSCCRG00000009135) #22	six9 (ENSCCRG00000062097)	six5 (ENSCCRG00000033089)	tbcb (ENSCCRG00000010484)	yap1 (ENSCCRG00000009350)	ENSCCRG00000068775	luzp2 (ENSCCRG00000046663)	nucb2b (ENSCCRG00000026384)	nat10 (ENSCCRG00000019057)	caprin1b (ENSCCRG00000019354)	lmo2 (ENSCCRG00000026374)	alx4b (ENSCCRG00000005580)	tspan18b (ENSCCRG00000044704)	cd82b (ENSCCRG00000054011)	tp53i11b (ENSCCRG00000064374)	ENSCCRG00000064958
Golden-line barbel	MODERN SPECIES	502	ppp1r13l (ENSSGRG00000024259) #10	TMEM91 (ENSSGRG00000024258)	exosc5 (ENSSGRG00000024257)	bckdha (ENSSGRG00000024234)	b3gat1a (ENSSGRG00000024206)	siae (ENSSGRG00000024202)	clasrp (ENSSGRG00000024141)	znf296 (ENSSGRG00000024139)	ENSSGRG00000024061	fosb (ENSSGRG00000024059) #13	si:ch211-160d20.3 (ENSSGRG00000024058)	ttc9b (ENSSGRG00000024057)	MAP3K10 (ENSSGRG00000024056)	ENSSGRG00000024053	ENSSGRG00000023966	qpctla (ENSSGRG00000023956) #22	six9 (ENSSGRG00000023955)	six5 (ENSSGRG00000023952)	tbcb (ENSSGRG00000023941)	yap1 (ENSSGRG00000023940)	ENSSGRG00000023939	luzp2 (ENSSGRG00000023936)	nucb2b (ENSSGRG00000023935)	si:dkey-10o6.2 (ENSSGRG00000023933)	si:dkey-10o6.2 (ENSSGRG00000023928)	nat10 (ENSSGRG00000022793)	lmo2 (ENSSGRG00000022773)	alx4b (ENSSGRG00000022772)	tspan18b (ENSSGRG00000022743)	tp53i11b (ENSSGRG00000022732)	ENSSGRG00000022729
Cyprininae	ANCESTRAL SPECIES	47	ENSGT00390000009795.s #17	ENSGT00940000160551.a #10	ENSGT00950000183147.A.b.a.a	ENSGT00940000153348.C.h	ENSGT00530000063174.b.d	ENSGT00940000157165.e.a.a	ENSGT00390000010608	ENSGT00940000153892.A.f	ENSGT00940000160667.b	ENSGT00940000166395.a	ENSGT00940000160358.i #13	ENSGT00390000005773.a	ENSGT00940000161494	ENSGT00940000160518.g	ENSGT00940000159183.`b.a	ENSGT00390000003107.b.j.b #22	ENSGT00940000158292.b.a	ENSGT00940000166238.a.b	ENSGT00940000156119.a	ENSGT00510000046760.a.ab.h	ENSGT00390000013786.b	ENSGT01060000253610	ENSGT00510000046760.a.ab.g.a	ENSGT00390000013786.a	ENSGT00390000013180.k.a.a	ENSGT00390000001927.a.a.f	ENSGT00530000064489.j	ENSGT00390000009140.b	ENSGT00940000153438.a.s.a.b	ENSGT00940000160199.a	ENSGT00940000159662.c.b.a
Cyprininae_a	ANCESTRAL SPECIES	133	ENSGT00390000009795.s #17	ENSGT00940000160551.a #10	ENSGT00950000183147.A.b.a.a	ENSGT00940000153348.C.h	ENSGT00530000063174.b.d	ENSGT00940000157165.e.a.a	ENSGT00390000010608	ENSGT00940000153892.A.f	ENSGT00940000160667.b	ENSGT00940000166395.a	ENSGT00940000160358.i #13	ENSGT00390000005773.a	ENSGT00940000161494.g	ENSGT00940000160518.g	ENSGT00940000159183.`b.a	ENSGT00390000003107.b.j.b #22	ENSGT00940000158292.b.a	ENSGT00940000166238.a.b	ENSGT00940000156119.a	ENSGT00510000046760.a.ab.h	ENSGT00390000013786.b	ENSGT01060000253610	ENSGT00510000046760.a.ab.g.a	ENSGT00390000013786.a	ENSGT00390000013180.k.a.a	ENSGT00390000001927.a.a.f	ENSGT00530000064489.j	ENSGT00390000009140.b	ENSGT00940000153438.a.s.a.b	ENSGT00940000160199.a	ENSGT00940000159662.c.b.a
Golden-line barbel	MODERN SPECIES	710	ppp1r13l (ENSSGRG00000052228) #10	TMEM91 (ENSSGRG00000052230)	exosc5 (ENSSGRG00000052231)	bckdha (ENSSGRG00000052232)	b3gat1a (ENSSGRG00000052250)	clasrp (ENSSGRG00000052261)	znf296 (ENSSGRG00000052264)	ENSSGRG00000052267	fosb (ENSSGRG00000052289) #13	si:ch211-160d20.3 (ENSSGRG00000052292)	ttc9b (ENSSGRG00000052296)	MAP3K10 (ENSSGRG00000052297)	ENSSGRG00000052298	ENSSGRG00000052299	ENSSGRG00000052302	qpctla (ENSSGRG00000052311) #22	six5 (ENSSGRG00000052312)	tbcb (ENSSGRG00000052313)	ENSSGRG00000052321	ENSSGRG00000052326
Common carp reference	MODERN SPECIES	19	rasgrp4 (ENSCCRG00000039633)	opa3 (ENSCCRG00000080317) #17	ppp1r13l (ENSCCRG00000079572) #10	TMEM91 (ENSCCRG00000059122)	exosc5 (ENSCCRG00000069190)	bckdha (ENSCCRG00000036779)	b3gat1a (ENSCCRG00000072321)	siae (ENSCCRG00000077901)	clasrp (ENSCCRG00000076450)	znf296 (ENSCCRG00000075718)	ENSCCRG00000063118	ENSCCRG00000081797 #13	si:ch211-160d20.3 (ENSCCRG00000008968)	ENSCCRG00000058889	ENSCCRG00000009759	qpctla (ENSCCRG00000009775) #22	six5 (ENSCCRG00000064988)	tbcb (ENSCCRG00000058208)	ENSCCRG00000070059	yap1 (ENSCCRG00000033074)	ENSCCRG00000062734	ENSCCRG00000060831	luzp2 (ENSCCRG00000017872)	nucb2b (ENSCCRG00000001895)	si:dkey-10o6.2 (ENSCCRG00000002297)	nat10 (ENSCCRG00000056635)	caprin1b (ENSCCRG00000069633)	lmo2 (ENSCCRG00000074657)	alx4b (ENSCCRG00000032454)	tspan18b (ENSCCRG00000005588)	cd82b (ENSCCRG00000060334)
Zebrafish	MODERN SPECIES	9	TMEM91 (ENSDARG00000068456)	exosc5 (ENSDARG00000040557)	bckdha (ENSDARG00000040555)	b3gat1a (ENSDARG00000040547)	siae (ENSDARG00000040527)	clasrp (ENSDARG00000061742)	znf296 (ENSDARG00000077897)	ENSDARG00000010758	fosb (ENSDARG00000055751) #13	C18H19orf47 (ENSDARG00000020611)	ttc9b (ENSDARG00000068421)	ENSDARG00000089627	ENSDARG00000055746	MAP3K10 (ENSDARG00000055672)	SIPA1L3 (ENSDARG00000061699)	qpctla (ENSDARG00000061691) #22	six9 (ENSDARG00000068407)	six5 (ENSDARG00000068406)	tbcb (ENSDARG00000068404)	ENSDARG00000095674	yap1 (ENSDARG00000068401)	ENSDARG00000068398	luzp2 (ENSDARG00000068247)	nucb2b (ENSDARG00000036291)	si:dkey-10o6.2 (ENSDARG00000074628)	nat10 (ENSDARG00000054259)	caprin1b (ENSDARG00000054272)	lmo2 (ENSDARG00000095019)	alx4b (ENSDARG00000074442)	ENSDARG00000093233	onecut1 (ENSDARG00000007982)
Clupeiformes	ANCESTRAL SPECIES	127								ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000166238.b.b.a	ENSGT00940000156119	ENSGT00510000046760.a.ab	ENSGT00390000013786	ENSGT01060000248588.a.d.a	ENSGT00940000159713	ENSGT00940000155492.a.b	ENSGT00940000158183	ENSGT00950000183204.a.b	ENSGT00390000007968	ENSGT00940000156933.d.a	ENSGT00390000006949	ENSGT00900000141067
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	10	timm50 (ENSDCDG00000007769)	ppm1da (ENSDCDG00000007766)	sars2 (ENSDCDG00000007716)	si:dkey-260j18.2 (ENSDCDG00000007691)	ENSDCDG00000007683	SIDT2 (ENSDCDG00000007635)	ENSDCDG00000007621	clasrp (ENSDCDG00000007576)	znf296 (ENSDCDG00000007509)	ENSDCDG00000005795	fosb (ENSDCDG00000005679) #13	si:ch211-160d20.3 (ENSDCDG00000005671)	ttc9b (ENSDCDG00000005667)	MAP3K10 (ENSDCDG00000034385)	SIPA1L3 (ENSDCDG00000034378)	qpctla (ENSDCDG00000034373) #22	six9 (ENSDCDG00000034370)	six5 (ENSDCDG00000034367)	tbcb (ENSDCDG00000034364)	ENSDCDG00000034363	yap1 (ENSDCDG00000034360)	ENSDCDG00000034354	ENSDCDG00000034302	pgr (ENSDCDG00000034288)	ARHGAP42 (ENSDCDG00000034216)	cntn5 (ENSDCDG00000032507)	FBXO40 (ENSDCDG00000032386)	ttc36 (ENSDCDG00000032385)	NECTIN1 (ENSDCDG00000032382)	TREH (ENSDCDG00000032359)	DDX6 (ENSDCDG00000032357)
Denticle herring	MODERN SPECIES	147															ENSDCDG00000007888	qpctla (ENSDCDG00000007908) #22	six9 (ENSDCDG00000007915)	six5 (ENSDCDG00000007922)	tbcb (ENSDCDG00000007929)
Atlantic herring	MODERN SPECIES	25	or71at1 (ENSCHAG00000016283)	ENSCHAG00000016307	ENSCHAG00000016322	ENSCHAG00000016328	ENSCHAG00000016340	ENSCHAG00000016351	ENSCHAG00000016366	ENSCHAG00000016410	ENSCHAG00000016428	ENSCHAG00000016443	ENSCHAG00000016457	ENSCHAG00000016463	ENSCHAG00000016477	ccdc9 (ENSCHAG00000016509)	pgr (ENSCHAG00000016525)	qpctla (ENSCHAG00000016740) #22	six5 (ENSCHAG00000016752)	ENSCHAG00000016756	si:ch211-160d20.3 (ENSCHAG00000016793)	ttc9b (ENSCHAG00000016799)	MAP3K10 (ENSCHAG00000016808)	ENSCHAG00000016813	ENSCHAG00000016857	ENSCHAG00000016863	si:dkey-260j18.2 (ENSCHAG00000016879)	sae1 (ENSCHAG00000016905)	ENSCHAG00000017069	clrn1 (ENSCHAG00000017084)	GPR171 (ENSCHAG00000017088)	ENSCHAG00000017107	P2RY14 (ENSCHAG00000017126)
Euteleosteomorpha	ANCESTRAL SPECIES	55	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00530000063583.a.a.b	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000162930	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260
Acanthomorphata	ANCESTRAL SPECIES	8	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.a.b	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00970000195560	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260	ENSGT00940000165900
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.a.b	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00970000195560	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00970000195560	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Tiger tail seahorse	MODERN SPECIES	357	gfm1 (ENSHCOG00000007638)	itpkcb (ENSHCOG00000000668)	zgc:153119 (ENSHCOG00000007578)	snrpa (ENSHCOG00000007571)	ENSHCOG00000007552	ENSHCOG00000000847	clasrp (ENSHCOG00000007529)	znf296 (ENSHCOG00000007509)	ENSHCOG00000007498	fosb (ENSHCOG00000007461) #13	si:ch211-160d20.3 (ENSHCOG00000000252)	ttc9b (ENSHCOG00000007422)	MAP3K10 (ENSHCOG00000007405)	SIPA1L3 (ENSHCOG00000007347)	rrm1 (ENSHCOG00000007337)	qpctla (ENSHCOG00000007323) #22	six5 (ENSHCOG00000007315)	tbcb (ENSHCOG00000000238)	clptm1 (ENSHCOG00000000707)	ENSHCOG00000007270	mrpl28 (ENSHCOG00000000219)	ppp1r37 (ENSHCOG00000007120)	ENSHCOG00000007061	bmp16 (ENSHCOG00000007049)	gemin7 (ENSHCOG00000007043)	calm3a (ENSHCOG00000007031)	PTGIR (ENSHCOG00000007014)	ENSHCOG00000007004	ppm1na (ENSHCOG00000006994)	rtn2a (ENSHCOG00000006977)	rhoub (ENSHCOG00000006961)
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Aplocheiloidei	ANCESTRAL SPECIES	8	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Mangrove rivulus	MODERN SPECIES	79	neu4 (ENSKMAG00000020812)	lxn (ENSKMAG00000020826)	itpkcb (ENSKMAG00000020833)	zgc:153119 (ENSKMAG00000020843)	snrpa (ENSKMAG00000020852)	ENSKMAG00000020885	clasrp (ENSKMAG00000020973)	znf296 (ENSKMAG00000021016)	ENSKMAG00000021028	fosb (ENSKMAG00000021052) #13	si:ch211-160d20.3 (ENSKMAG00000021074)	ENSKMAG00000021089	MAP3K10 (ENSKMAG00000021097)	SIPA1L3 (ENSKMAG00000021136)	rrm1 (ENSKMAG00000021216)	qpctla (ENSKMAG00000021237) #22	six9 (ENSKMAG00000021242)	six5 (ENSKMAG00000021248)	tbcb (ENSKMAG00000021257)	clptm1 (ENSKMAG00000021262)	ENSKMAG00000021271	mrpl28 (ENSKMAG00000021277)	ENSKMAG00000021287	ppp1r37 (ENSKMAG00000021296)	ENSKMAG00000021310	bmp16 (ENSKMAG00000021322)	gemin7 (ENSKMAG00000021331)	ENSKMAG00000021341	ENSKMAG00000021362	PTGIR (ENSKMAG00000021374)	ENSKMAG00000021377
Turquoise killifish	MODERN SPECIES	1615	GFM1 (ENSNFUG00015020297)	ITPKCB (ENSNFUG00015021216)	C18H19ORF54 (ENSNFUG00015021217)	SNRPA (ENSNFUG00015021220)	ENSNFUG00015021238	clasrp (ENSNFUG00015021243)	znf296 (ENSNFUG00015009017)	ENSNFUG00015009114	fosb (ENSNFUG00015009455) #13	C18H19ORF47 (ENSNFUG00015009460)	ttc9b (ENSNFUG00015009469)	MAP3K10 (ENSNFUG00015009477)	ENSNFUG00015009488	SIPA1L3 (ENSNFUG00015009516)	RRM1 (ENSNFUG00015009581)	qpctla (ENSNFUG00015009609) #22	six9 (ENSNFUG00015009685)	SIX4.3 (ENSNFUG00015009713)	tbcb (ENSNFUG00015009726)	clptm1 (ENSNFUG00015009826)	ENSNFUG00015009970	mrpl28 (ENSNFUG00015010032)	PPP1R37 (ENSNFUG00015010055)	ENSNFUG00015010100	ENSNFUG00015010123	Nfu_g_1_000575 (ENSNFUG00015010130)	ENSNFUG00015010136	GEMIN7 (ENSNFUG00015010141)	Nfu_g_1_007837 (ENSNFUG00015010167)	PTGIR (ENSNFUG00015010329)	PPM1NA (ENSNFUG00015010383)
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260	ENSGT00940000165900
Poecilia	ANCESTRAL SPECIES	2	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260	ENSGT00940000165900
NAME_6	ANCESTRAL SPECIES	75	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00740000115816.A	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Amazon molly	MODERN SPECIES	283	gfm1 (ENSPFOG00000011022)	ENSPFOG00000020377	itpkcb (ENSPFOG00000010937)	zgc:153119 (ENSPFOG00000010910)	snrpa (ENSPFOG00000010881)	ENSPFOG00000010837	clasrp (ENSPFOG00000010596)	ENSPFOG00000010569	ENSPFOG00000010342	fosb (ENSPFOG00000010300) #13	si:ch211-160d20.3 (ENSPFOG00000010239)	ttc9b (ENSPFOG00000010209)	MAP3K10 (ENSPFOG00000009993)	SIPA1L3 (ENSPFOG00000009920)	rrm1 (ENSPFOG00000009903)	qpctla (ENSPFOG00000009835) #22	six9 (ENSPFOG00000009821)	six5 (ENSPFOG00000009796)	tbcb (ENSPFOG00000009743)	clptm1 (ENSPFOG00000009570)	ENSPFOG00000022538	mrpl28 (ENSPFOG00000009485)	ENSPFOG00000009466	ppp1r37 (ENSPFOG00000009326)	bmp16 (ENSPFOG00000009315)	gemin7 (ENSPFOG00000009309)	ENSPFOG00000022404	ENSPFOG00000024002	ENSPFOG00000009278	PTGIR (ENSPFOG00000009272)	ENSPFOG00000024064
Sailfin molly	MODERN SPECIES	85	lxn (ENSPLAG00000019511)	gfm1 (ENSPLAG00000019585)	itpkcb (ENSPLAG00000019593)	zgc:153119 (ENSPLAG00000019599)	snrpa (ENSPLAG00000019608)	ENSPLAG00000000439	clasrp (ENSPLAG00000019619)	znf296 (ENSPLAG00000019623)	ENSPLAG00000019658	fosb (ENSPLAG00000019687) #13	si:ch211-160d20.3 (ENSPLAG00000019740)	ttc9b (ENSPLAG00000019756)	MAP3K10 (ENSPLAG00000019815)	SIPA1L3 (ENSPLAG00000019921)	rrm1 (ENSPLAG00000000790)	qpctla (ENSPLAG00000019951) #22	six9 (ENSPLAG00000019964)	six5 (ENSPLAG00000019984)	tbcb (ENSPLAG00000020007)	clptm1 (ENSPLAG00000020018)	ENSPLAG00000020036	mrpl28 (ENSPLAG00000020059)	ENSPLAG00000020072	ppp1r37 (ENSPLAG00000020124)	ENSPLAG00000020171	bmp16 (ENSPLAG00000020206)	gemin7 (ENSPLAG00000020214)
Guppy	MODERN SPECIES	443	gfm1 (ENSPREG00000001332)	itpkcb (ENSPREG00000001321)	zgc:153119 (ENSPREG00000001310)	snrpa (ENSPREG00000001279)	ENSPREG00000001265	ENSPREG00000001231	clasrp (ENSPREG00000001075)	znf296 (ENSPREG00000001061)	ENSPREG00000000933	fosb (ENSPREG00000000893) #13	si:ch211-160d20.3 (ENSPREG00000000803)	ttc9b (ENSPREG00000000778)	MAP3K10 (ENSPREG00000000770)	SIPA1L3 (ENSPREG00000000759)	rrm1 (ENSPREG00000000731)	qpctla (ENSPREG00000000703) #22	six9 (ENSPREG00000000683)	six5 (ENSPREG00000000679)	tbcb (ENSPREG00000000640)	clptm1 (ENSPREG00000000569)	ENSPREG00000000561	mrpl28 (ENSPREG00000022968)	ppp1r37 (ENSPREG00000022961)	ENSPREG00000022956	bmp16 (ENSPREG00000022947)	gemin7 (ENSPREG00000022938)	calm3a (ENSPREG00000022928)	PTGIR (ENSPREG00000022925)	ENSPREG00000022919	ppm1na (ENSPREG00000022913)	ENSPREG00000022893
Platyfish	MODERN SPECIES	9	gfm1 (ENSXMAG00000000261)	itpkcb (ENSXMAG00000018575)	zgc:153119 (ENSXMAG00000018577)	snrpa (ENSXMAG00000018580)	ENSXMAG00000023615	ENSXMAG00000022413	clasrp (ENSXMAG00000018599)	znf296 (ENSXMAG00000026001)	ENSXMAG00000018623	fosb (ENSXMAG00000018663) #13	si:ch211-160d20.3 (ENSXMAG00000018670)	ttc9b (ENSXMAG00000029324)	MAP3K10 (ENSXMAG00000018686)	SIPA1L3 (ENSXMAG00000021118)	rrm1 (ENSXMAG00000004335)	qpctla (ENSXMAG00000004319) #22	six9 (ENSXMAG00000004316)	six5 (ENSXMAG00000025473)	tbcb (ENSXMAG00000004309)	clptm1 (ENSXMAG00000004298)	ENSXMAG00000004297	mrpl28 (ENSXMAG00000004293)	ENSXMAG00000026593	ppp1r37 (ENSXMAG00000020834)	ENSXMAG00000019557	bmp16 (ENSXMAG00000026621)	gemin7 (ENSXMAG00000019556)	calm3b (ENSXMAG00000004263)	PTGIR (ENSXMAG00000025943)	ENSXMAG00000023012	ppm1na (ENSXMAG00000001773)
NAME_4	ANCESTRAL SPECIES	40	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039
Mummichog	MODERN SPECIES	2460	lxn (ENSFHEG00000006032)	gfm1 (ENSFHEG00000006091)	itpkcb (ENSFHEG00000006105)	zgc:153119 (ENSFHEG00000006124)	snrpa (ENSFHEG00000006165)	ENSFHEG00000006177	clasrp (ENSFHEG00000006269)	znf296 (ENSFHEG00000006291)	ENSFHEG00000006314	fosb (ENSFHEG00000006330) #13	ENSFHEG00000006350	si:ch211-160d20.3 (ENSFHEG00000006375)	ENSFHEG00000006383	SIPA1L3 (ENSFHEG00000006398)	rrm1 (ENSFHEG00000006424)	qpctla (ENSFHEG00000006441) #22	six9 (ENSFHEG00000006455)	six5 (ENSFHEG00000006483)	tbcb (ENSFHEG00000006511)	clptm1 (ENSFHEG00000006518)	ENSFHEG00000006528	mrpl28 (ENSFHEG00000006545)	ENSFHEG00000006554	ppp1r37 (ENSFHEG00000006595)	ENSFHEG00000006604	bmp16 (ENSFHEG00000006627)	gemin7 (ENSFHEG00000006645)
Sheepshead minnow	MODERN SPECIES	765												ttc9b (ENSCVAG00000004945)	MAP3K10 (ENSCVAG00000004957)	SIPA1L3 (ENSCVAG00000004984)	rrm1 (ENSCVAG00000004996)	qpctla (ENSCVAG00000005007) #22	six9 (ENSCVAG00000005019)	six5 (ENSCVAG00000005028)	tbcb (ENSCVAG00000000697)	clptm1 (ENSCVAG00000005098)	ENSCVAG00000005114	mrpl28 (ENSCVAG00000005123)	ENSCVAG00000005135	ppp1r37 (ENSCVAG00000005154)	ENSCVAG00000005165	bmp16 (ENSCVAG00000005189)	gemin7 (ENSCVAG00000005214)
Oryzias	ANCESTRAL SPECIES	8	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Oryzias_a	ANCESTRAL SPECIES	8	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Chinese medaka	MODERN SPECIES	925	neu4 (ENSOSIG00000009633)	lxn (ENSOSIG00000009631)	gfm1 (ENSOSIG00000008912)	itpkcb (ENSOSIG00000008904)	zgc:153119 (ENSOSIG00000008903)	snrpa (ENSOSIG00000008902)	clasrp (ENSOSIG00000008900)	znf296 (ENSOSIG00000008899)	ENSOSIG00000008898	fosb (ENSOSIG00000008897) #13	si:ch211-160d20.3 (ENSOSIG00000008896)	ttc9b (ENSOSIG00000008895)	ENSOSIG00000008894	SIPA1L3 (ENSOSIG00000008864)	rrm1 (ENSOSIG00000008860)	qpctla (ENSOSIG00000008857) #22	six9 (ENSOSIG00000008855)	six5 (ENSOSIG00000008854)	tbcb (ENSOSIG00000008853)	clptm1 (ENSOSIG00000007940)	ENSOSIG00000007928	mrpl28 (ENSOSIG00000007927)	ENSOSIG00000007924	ppp1r37 (ENSOSIG00000007921)	ENSOSIG00000007915	bmp16 (ENSOSIG00000007914)	gemin7 (ENSOSIG00000007912)	calm3b (ENSOSIG00000007750)	PTGIR (ENSOSIG00000007743)	ENSOSIG00000007740	ENSOSIG00000007736
Japanese Medaka HdrR	MODERN SPECIES	4	zgc:153119 (ENSORLG00000006507)	snrpa (ENSORLG00000006536)	ENSORLG00000006541	ENSORLG00000006544	ENSORLG00000022804	ENSORLG00000029793	clasrp (ENSORLG00000006568)	znf296 (ENSORLG00000028962)	ENSORLG00000006650	fosb (ENSORLG00000028302) #13	si:ch211-160d20.3 (ENSORLG00000006678)	ttc9b (ENSORLG00000006685)	MAP3K10 (ENSORLG00000006697)	ENSORLG00000006721	ENSORLG00000006731	qpctla (ENSORLG00000006752) #22	six9 (ENSORLG00000006757)	six5 (ENSORLG00000006762)	tbcb (ENSORLG00000006774)	clptm1 (ENSORLG00000006781)	ENSORLG00000029281	ENSORLG00000006786	mrpl28 (ENSORLG00000006806)	ENSORLG00000006812	ppp1r37 (ENSORLG00000006817)	ENSORLG00000006822	bmp16 (ENSORLG00000028570)	gemin7 (ENSORLG00000006826)	ENSORLG00000006842	PTGIR (ENSORLG00000006848)	ENSORLG00000006854
Oryzias_b	ANCESTRAL SPECIES	14	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Indian medaka	MODERN SPECIES	12	gfm1 (ENSOMEG00000012894)	itpkcb (ENSOMEG00000012955)	zgc:153119 (ENSOMEG00000012989)	snrpa (ENSOMEG00000013010)	ENSOMEG00000013024	ENSOMEG00000013038	clasrp (ENSOMEG00000013102)	znf296 (ENSOMEG00000013130)	ENSOMEG00000013205	fosb (ENSOMEG00000013238) #13	si:ch211-160d20.3 (ENSOMEG00000013265)	ttc9b (ENSOMEG00000013281)	MAP3K10 (ENSOMEG00000013309)	SIPA1L3 (ENSOMEG00000013380)	rrm1 (ENSOMEG00000013415)	qpctla (ENSOMEG00000013429) #22	six9 (ENSOMEG00000013448)	six5 (ENSOMEG00000013459)	tbcb (ENSOMEG00000013486)	clptm1 (ENSOMEG00000013516)	ENSOMEG00000013536	mrpl28 (ENSOMEG00000013553)	ENSOMEG00000013567	ppp1r37 (ENSOMEG00000013594)	ENSOMEG00000013642	bmp16 (ENSOMEG00000013665)	calm3a (ENSOMEG00000013695)	PTGIR (ENSOMEG00000013711)	ENSOMEG00000013732	ppm1na (ENSOMEG00000013743)	rtn2a (ENSOMEG00000000735)
Javanese ricefish	MODERN SPECIES	4	lxn (ENSOJAG00000004720)	gfm1 (ENSOJAG00000004064)	itpkcb (ENSOJAG00000003968)	zgc:153119 (ENSOJAG00000003961)	snrpa (ENSOJAG00000003931)	ENSOJAG00000003912	clasrp (ENSOJAG00000003853)	znf296 (ENSOJAG00000003749)	ENSOJAG00000003703	fosb (ENSOJAG00000003654) #13	si:ch211-160d20.3 (ENSOJAG00000003626)	ttc9b (ENSOJAG00000003617)	MAP3K10 (ENSOJAG00000003506)	SIPA1L3 (ENSOJAG00000003375)	rrm1 (ENSOJAG00000003362)	qpctla (ENSOJAG00000003352) #22	six9 (ENSOJAG00000003343)	six5 (ENSOJAG00000003337)	tbcb (ENSOJAG00000003330)	clptm1 (ENSOJAG00000003041)	ENSOJAG00000002987	mrpl28 (ENSOJAG00000002974)	ENSOJAG00000002968	ppp1r37 (ENSOJAG00000002937)	ENSOJAG00000002927	bmp16 (ENSOJAG00000002922)	gemin7 (ENSOJAG00000002917)	ENSOJAG00000002765	PTGIR (ENSOJAG00000002721)	ENSOJAG00000002717	ppm1na (ENSOJAG00000002711)
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Amphiprion	ANCESTRAL SPECIES	36	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000155602.r.a.b.d	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230
Clown anemonefish	MODERN SPECIES	1950													ENSAOCG00000010195	SIPA1L3 (ENSAOCG00000010252)	rrm1 (ENSAOCG00000010279)	qpctla (ENSAOCG00000010294) #22	six9 (ENSAOCG00000010316)	six5 (ENSAOCG00000010326)	klhl7 (ENSAOCG00000010341)
Orange clownfish	MODERN SPECIES	23	itpkcb (ENSAPEG00000024486)	zgc:153119 (ENSAPEG00000024482)	snrpa (ENSAPEG00000024469)	ENSAPEG00000024466	ENSAPEG00000024460	ENSAPEG00000024455	clasrp (ENSAPEG00000024441)	znf296 (ENSAPEG00000024436)	ENSAPEG00000024427	fosb (ENSAPEG00000024418) #13	si:ch211-160d20.3 (ENSAPEG00000024381)	ttc9b (ENSAPEG00000024376)	MAP3K10 (ENSAPEG00000024356)	SIPA1L3 (ENSAPEG00000024329)	rrm1 (ENSAPEG00000024324)	qpctla (ENSAPEG00000024314) #22	six9 (ENSAPEG00000024312)	six5 (ENSAPEG00000024305)	klhl7 (ENSAPEG00000024276)	tbcb (ENSAPEG00000024258)	clptm1 (ENSAPEG00000024248)	ENSAPEG00000024220
Spiny chromis	MODERN SPECIES	48	lxn (ENSAPOG00000016397)	gfm1 (ENSAPOG00000016489)	itpkcb (ENSAPOG00000016508)	zgc:153119 (ENSAPOG00000016520)	snrpa (ENSAPOG00000016549)	ENSAPOG00000016562	clasrp (ENSAPOG00000016578)	ENSAPOG00000016595	ENSAPOG00000016662	fosb (ENSAPOG00000016692) #13	si:ch211-160d20.3 (ENSAPOG00000016700)	ttc9b (ENSAPOG00000016707)	MAP3K10 (ENSAPOG00000016712)	SIPA1L3 (ENSAPOG00000016721)	rrm1 (ENSAPOG00000016739)	qpctla (ENSAPOG00000016752) #22	six9 (ENSAPOG00000016776)	six5 (ENSAPOG00000016780)	tbcb (ENSAPOG00000016810)	clptm1 (ENSAPOG00000016825)	ENSAPOG00000016851	mrpl28 (ENSAPOG00000016883)	ENSAPOG00000000460	ppp1r37 (ENSAPOG00000016897)	ENSAPOG00000016927	bmp16 (ENSAPOG00000016950)	gemin7 (ENSAPOG00000016954)	ENSAPOG00000016975	calm3a (ENSAPOG00000016996)	PTGIR (ENSAPOG00000000955)	ENSAPOG00000017041
Bicolor damselfish	MODERN SPECIES	988											ENSSPAG00000010955	ENSSPAG00000010971	ENSSPAG00000010985	ENSSPAG00000011001	rrm1 (ENSSPAG00000011022)	qpctla (ENSSPAG00000011034) #22	six9 (ENSSPAG00000011047)	six5 (ENSSPAG00000011058)	tbcb (ENSSPAG00000011079)	clptm1 (ENSSPAG00000011104)	ENSSPAG00000011134	mrpl28 (ENSSPAG00000011153)	ppp1r37 (ENSSPAG00000011177)	ENSSPAG00000011199	bmp16 (ENSSPAG00000011247)
Cichlidae	ANCESTRAL SPECIES	21	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230
Pseudocrenilabrinae	ANCESTRAL SPECIES	19	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000166839	ENSGT01050000244808.D	ENSGT00940000155435.A.a	ENSGT00940000177175	ENSGT00390000002766.b.a	ENSGT00390000005104	ENSGT00940000157030.c.b	ENSGT00940000165275.B	ENSGT01050000244891.C.c.a	ENSGT00940000165917
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	15	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000166839	ENSGT01050000244808.D	ENSGT00940000155435.A.a	ENSGT00940000177175	ENSGT00390000002766.b.a	ENSGT00390000005104	ENSGT00940000157030.c.b	ENSGT00940000165275.B	ENSGT01050000244891.C.c.a	ENSGT00940000165917
Haplochromini	ANCESTRAL SPECIES	15	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000166839	ENSGT01050000244808.D	ENSGT00940000155435.A.a	ENSGT00940000177175	ENSGT00390000002766.b.a	ENSGT00390000005104	ENSGT00940000157030.c.b	ENSGT00940000165275.B	ENSGT01050000244891.C.c.a	ENSGT00940000165917
Burton s mouthbrooder	MODERN SPECIES	382	gfm1 (ENSHBUG00000002120)	lxn (ENSHBUG00000002100)	itpkcb (ENSHBUG00000002094)	zgc:153119 (ENSHBUG00000002089)	snrpa (ENSHBUG00000002084)	ENSHBUG00000002065	clasrp (ENSHBUG00000002053)	znf296 (ENSHBUG00000002026)	ENSHBUG00000002011	fosb (ENSHBUG00000001982) #13	si:ch211-160d20.3 (ENSHBUG00000001967)	ttc9b (ENSHBUG00000001960)	MAP3K10 (ENSHBUG00000001947)	SIPA1L3 (ENSHBUG00000001930)	rrm1 (ENSHBUG00000001902)	qpctla (ENSHBUG00000001892) #22	six9 (ENSHBUG00000001886)	six5 (ENSHBUG00000001879)	tbcb (ENSHBUG00000001877)	clptm1 (ENSHBUG00000001865)	ENSHBUG00000001846	rabgef1l (ENSHBUG00000001831)	ENSHBUG00000001819	ENSHBUG00000001808	otol1b (ENSHBUG00000001804)	ENSHBUG00000001798	sptssb (ENSHBUG00000001794)	nmd3 (ENSHBUG00000001781)	PPM1L (ENSHBUG00000000014)	ENSHBUG00000001750	kpna4 (ENSHBUG00000001734)
Haplochromini_A	ANCESTRAL SPECIES	20	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00940000166839	ENSGT01050000244808.D	ENSGT00940000155435.A.a	ENSGT00940000177175	ENSGT00390000002766.b.a	ENSGT00390000005104	ENSGT00940000157030.c.b	ENSGT00940000165275.B	ENSGT01050000244891.C.c.a	ENSGT00940000165917
P. nyererei	MODERN SPECIES	412	lxn (ENSPNYG00000006130)	gfm1 (ENSPNYG00000006037)	itpkcb (ENSPNYG00000006145)	zgc:153119 (ENSPNYG00000006165)	snrpa (ENSPNYG00000006184)	ENSPNYG00000006214	clasrp (ENSPNYG00000006221)	znf296 (ENSPNYG00000006242)	ENSPNYG00000006261	fosb (ENSPNYG00000006293) #13	si:ch211-160d20.3 (ENSPNYG00000006313)	ttc9b (ENSPNYG00000006355)	MAP3K10 (ENSPNYG00000006376)	SIPA1L3 (ENSPNYG00000006392)	rrm1 (ENSPNYG00000006450)	qpctla (ENSPNYG00000006471) #22	six9 (ENSPNYG00000006478)	six5 (ENSPNYG00000006486)	tbcb (ENSPNYG00000006505)	clptm1 (ENSPNYG00000006528)	ENSPNYG00000006574	rabgef1l (ENSPNYG00000006634)	ENSPNYG00000006665	otol1b (ENSPNYG00000006696)	ENSPNYG00000006760	sptssb (ENSPNYG00000006767)	nmd3 (ENSPNYG00000006778)	PPM1L (ENSPNYG00000006822)	ENSPNYG00000006844	kpna4 (ENSPNYG00000006856)	ENSPNYG00000006904
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000179919	ENSGT00940000160230	ENSGT00940000166839	ENSGT01050000244808.D	ENSGT00940000155435.A.a	ENSGT00940000177175	ENSGT00390000002766.b.a	ENSGT00390000005104	ENSGT00940000157030.c.b	ENSGT00940000165275.B	ENSGT01050000244891.C.c.a
Eastern happy	MODERN SPECIES	5	lxn (ENSACLG00000016712)	gfm1 (ENSACLG00000016586)	itpkcb (ENSACLG00000016575)	zgc:153119 (ENSACLG00000016572)	snrpa (ENSACLG00000016447)	ENSACLG00000016441	clasrp (ENSACLG00000016357)	znf296 (ENSACLG00000016343)	ENSACLG00000016149	fosb (ENSACLG00000016103) #13	si:ch211-160d20.3 (ENSACLG00000016076)	ttc9b (ENSACLG00000016067)	MAP3K10 (ENSACLG00000016052)	SIPA1L3 (ENSACLG00000015945)	rrm1 (ENSACLG00000015920)	qpctla (ENSACLG00000015900) #22	six9 (ENSACLG00000015876)	six5 (ENSACLG00000015851)	tbcb (ENSACLG00000015793)	clptm1 (ENSACLG00000015760)	ENSACLG00000015743	ENSACLG00000015712	rabgef1l (ENSACLG00000015673)	ENSACLG00000015639	ENSACLG00000015589	ENSACLG00000015577	otol1b (ENSACLG00000015567)	sptssb (ENSACLG00000015561)	nmd3 (ENSACLG00000015520)	PPM1L (ENSACLG00000015427)	ENSACLG00000015415
Zebra mbuna	MODERN SPECIES	1096	gfm1 (ENSMZEG00005016639)	lxn (ENSMZEG00005016656)	itpkcb (ENSMZEG00005016674)	zgc:153119 (ENSMZEG00005016686)	snrpa (ENSMZEG00005016689)	ENSMZEG00005016693	clasrp (ENSMZEG00005016696)	znf296 (ENSMZEG00005016704)	ENSMZEG00005016711	fosb (ENSMZEG00005016726) #13	si:ch211-160d20.3 (ENSMZEG00005016733)	ttc9b (ENSMZEG00005016745)	MAP3K10 (ENSMZEG00005016746)	SIPA1L3 (ENSMZEG00005016755)	rrm1 (ENSMZEG00005016763)	qpctla (ENSMZEG00005016771) #22	six9 (ENSMZEG00005016776)	six5 (ENSMZEG00005016782)	tbcb (ENSMZEG00005016786)	clptm1 (ENSMZEG00005016791)	ENSMZEG00005016800	ENSMZEG00005016823	rabgef1l (ENSMZEG00005016830)	ENSMZEG00005016841	otol1b (ENSMZEG00005016878)	ENSMZEG00005016883	sptssb (ENSMZEG00005016885)	nmd3 (ENSMZEG00005016888)	PPM1L (ENSMZEG00005000169)	ENSMZEG00005000218	kpna4 (ENSMZEG00005000227)
Lyretail cichlid	MODERN SPECIES	327	lxn (ENSNBRG00000004692)	gfm1 (ENSNBRG00000004631)	itpkcb (ENSNBRG00000004601)	zgc:153119 (ENSNBRG00000004560)	snrpa (ENSNBRG00000004413)	ENSNBRG00000004392	clasrp (ENSNBRG00000004382)	znf296 (ENSNBRG00000004365)	ENSNBRG00000004303	fosb (ENSNBRG00000004286) #13	si:ch211-160d20.3 (ENSNBRG00000004277)	ttc9b (ENSNBRG00000004262)	MAP3K10 (ENSNBRG00000004219)	ENSNBRG00000003799	rrm1 (ENSNBRG00000003700)	qpctla (ENSNBRG00000003690) #22	six9 (ENSNBRG00000003673)	six5 (ENSNBRG00000003649)	tbcb (ENSNBRG00000003628)	clptm1 (ENSNBRG00000003615)	ENSNBRG00000003583	ENSNBRG00000003569	ENSNBRG00000003510	rabgef1l (ENSNBRG00000003467)	ENSNBRG00000003437	ENSNBRG00000003422	otol1b (ENSNBRG00000003401)	sptssb (ENSNBRG00000003387)	nmd3 (ENSNBRG00000003324)	PPM1L (ENSNBRG00000003292)	ENSNBRG00000003281
Nile tilapia	MODERN SPECIES	5	lxn (ENSONIG00000003780)	gfm1 (ENSONIG00000003772)	itpkcb (ENSONIG00000003768)	zgc:153119 (ENSONIG00000003767)	snrpa (ENSONIG00000003761)	clasrp (ENSONIG00000003756)	znf296 (ENSONIG00000032905)	ENSONIG00000003718	fosb (ENSONIG00000003711) #13	lg14h19orf47 (ENSONIG00000028370)	ttc9b (ENSONIG00000039097)	MAP3K10 (ENSONIG00000003698)	ENSONIG00000003689	ENSONIG00000032291	rrm1 (ENSONIG00000003688)	qpctla (ENSONIG00000037295) #22	six9 (ENSONIG00000003683)	six5 (ENSONIG00000003682)	tbcb (ENSONIG00000031444)	clptm1 (ENSONIG00000003676)	ENSONIG00000003675	ENSONIG00000003672	ENSONIG00000003665	ENSONIG00000003663	ENSONIG00000003662	otol1b (ENSONIG00000003660)	ENSONIG00000031290	sptssb (ENSONIG00000027952)	nmd3 (ENSONIG00000003643)	ENSONIG00000039738	PPM1L (ENSONIG00000003642)
Midas cichlid	MODERN SPECIES	1305	gfm1 (ENSACIG00000014465)	itpkcb (ENSACIG00000014436)	zgc:153119 (ENSACIG00000014410)	snrpa (ENSACIG00000014399)	ENSACIG00000014214	clasrp (ENSACIG00000014149)	ENSACIG00000014136	ENSACIG00000014088	fosb (ENSACIG00000014071) #13	si:ch211-160d20.3 (ENSACIG00000014000)	ttc9b (ENSACIG00000013988)	MAP3K10 (ENSACIG00000013953)	SIPA1L3 (ENSACIG00000013854)	rrm1 (ENSACIG00000013837)	ENSACIG00000013834	qpctla (ENSACIG00000013819) #22	six9 (ENSACIG00000013805)	six5 (ENSACIG00000013794)	tbcb (ENSACIG00000013778)	clptm1 (ENSACIG00000013655)	ENSACIG00000013603
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Climbing perch	MODERN SPECIES	4	ENSATEG00000013789	itpkcb (ENSATEG00000025567)	zgc:153119 (ENSATEG00000013752)	snrpa (ENSATEG00000029946)	ENSATEG00000013727	ENSATEG00000030006	clasrp (ENSATEG00000013691)	znf296 (ENSATEG00000013683)	ENSATEG00000013640	fosb (ENSATEG00000013600) #13	si:ch211-160d20.3 (ENSATEG00000013540)	ttc9b (ENSATEG00000029383)	ENSATEG00000013453	ENSATEG00000013302	ENSATEG00000013255	qpctla (ENSATEG00000013220) #22	six9 (ENSATEG00000013202)	six5 (ENSATEG00000013199)	tbcb (ENSATEG00000013182)	clptm1 (ENSATEG00000013128)	ENSATEG00000013107	mrpl28 (ENSATEG00000013085)	ENSATEG00000013073	ppp1r37 (ENSATEG00000013054)	ENSATEG00000013043	bmp16 (ENSATEG00000013021)	gemin7 (ENSATEG00000012989)	ENSATEG00000012960	ENSATEG00000012953	ENSATEG00000012941	ppm1na (ENSATEG00000012925)
Siamese fighting fish	MODERN SPECIES	4	neu4 (ENSBSLG00000003150)	gfm1 (ENSBSLG00000003878)	lxn (ENSBSLG00000004242)	itpkcb (ENSBSLG00000004247)	zgc:153119 (ENSBSLG00000004251)	snrpa (ENSBSLG00000004258)	clasrp (ENSBSLG00000004885)	znf296 (ENSBSLG00000005171)	ENSBSLG00000005190	fosb (ENSBSLG00000005252) #13	si:ch211-160d20.3 (ENSBSLG00000005276)	ttc9b (ENSBSLG00000005299)	MAP3K10 (ENSBSLG00000005369)	SIPA1L3 (ENSBSLG00000005425)	rrm1 (ENSBSLG00000005518)	qpctla (ENSBSLG00000005566) #22	six9 (ENSBSLG00000005576)	six5 (ENSBSLG00000005593)	tbcb (ENSBSLG00000005608)	clptm1 (ENSBSLG00000005653)	mrpl28 (ENSBSLG00000005893)	ENSBSLG00000005898	ppp1r37 (ENSBSLG00000006589)	ENSBSLG00000007081	bmp16 (ENSBSLG00000007088)	gemin7 (ENSBSLG00000007092)	ENSBSLG00000007117	PTGIR (ENSBSLG00000007204)	ENSBSLG00000007206	ppm1na (ENSBSLG00000007209)	rtn2a (ENSBSLG00000007224)
Zig-zag eel	MODERN SPECIES	4	itpkcb (ENSMAMG00000011747)	C19orf54 (ENSMAMG00000028664)	ENSMAMG00000011725	snrpa (ENSMAMG00000011714)	ENSMAMG00000026524	ENSMAMG00000011702	clasrp (ENSMAMG00000011689)	znf296 (ENSMAMG00000011681)	ENSMAMG00000011649	fosb (ENSMAMG00000024892) #13	si:ch211-160d20.3 (ENSMAMG00000011610)	ttc9b (ENSMAMG00000011608)	ENSMAMG00000011570	ENSMAMG00000011563	ENSMAMG00000011554	qpctla (ENSMAMG00000011548) #22	six9 (ENSMAMG00000027159)	six5 (ENSMAMG00000011533)	tbcb (ENSMAMG00000011522)	clptm1 (ENSMAMG00000011513)	ENSMAMG00000011497	mrpl28 (ENSMAMG00000011487)	ENSMAMG00000011482	ppp1r37 (ENSMAMG00000011469)	ENSMAMG00000011197	bmp16 (ENSMAMG00000011163)	gemin7 (ENSMAMG00000011153)	ENSMAMG00000011135	ENSMAMG00000011128	ENSMAMG00000011109	ENSMAMG00000025723
Carangaria	ANCESTRAL SPECIES	8	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Carangaria_A	ANCESTRAL SPECIES	10	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Seriola	ANCESTRAL SPECIES	111	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230
Yellowtail amberjack	MODERN SPECIES	2689	gfm1 (ENSSLDG00000020606)	lxn (ENSSLDG00000020665)	itpkcb (ENSSLDG00000020679)	zgc:153119 (ENSSLDG00000020691)	snrpa (ENSSLDG00000020705)	ENSSLDG00000020713	clasrp (ENSSLDG00000020726)	znf296 (ENSSLDG00000020752)	ENSSLDG00000020766	fosb (ENSSLDG00000020838) #13	si:ch211-160d20.3 (ENSSLDG00000020872)	ttc9b (ENSSLDG00000020904)	MAP3K10 (ENSSLDG00000020921)	SIPA1L3 (ENSSLDG00000020970)	rrm1 (ENSSLDG00000020994)	qpctla (ENSSLDG00000021007) #22	six9 (ENSSLDG00000021018)	six5 (ENSSLDG00000021028)	tbcb (ENSSLDG00000021038)	clptm1 (ENSSLDG00000021058)	ENSSLDG00000021101
Greater amberjack	MODERN SPECIES	226	lxn (ENSSDUG00000018717)	gfm1 (ENSSDUG00000018665)	itpkcb (ENSSDUG00000018639)	zgc:153119 (ENSSDUG00000018629)	snrpa (ENSSDUG00000018621)	ENSSDUG00000018611	clasrp (ENSSDUG00000018560)	ENSSDUG00000018545	ENSSDUG00000018512	fosb (ENSSDUG00000018487) #13	si:ch211-160d20.3 (ENSSDUG00000018469)	ttc9b (ENSSDUG00000018463)	MAP3K10 (ENSSDUG00000018439)	SIPA1L3 (ENSSDUG00000018397)	rrm1 (ENSSDUG00000018379)	qpctla (ENSSDUG00000018373) #22	six9 (ENSSDUG00000018348)	six5 (ENSSDUG00000018322)	tbcb (ENSSDUG00000018304)	clptm1 (ENSSDUG00000018278)	ENSSDUG00000018201
Barramundi perch	MODERN SPECIES	314	gfm1 (ENSLCAG00010006849)	itpkcb (ENSLCAG00010006787)	zgc:153119 (ENSLCAG00010006783)	snrpa (ENSLCAG00010006777)	ENSLCAG00010006771	clasrp (ENSLCAG00010006707)	znf296 (ENSLCAG00010006672)	ENSLCAG00010006654	fosb (ENSLCAG00010006641) #13	si:ch211-160d20.3 (ENSLCAG00010006629)	ttc9b (ENSLCAG00010006622)	MAP3K10 (ENSLCAG00010006587)	ENSLCAG00010006575	ENSLCAG00010006555	rrm1 (ENSLCAG00010006541)	qpctla (ENSLCAG00010006511) #22	six9 (ENSLCAG00010006491)	six5 (ENSLCAG00010006488)	tbcb (ENSLCAG00010006479)	clptm1 (ENSLCAG00010006408)	ENSLCAG00010006367	mrpl28 (ENSLCAG00010006359)
Pleuronectoidei	ANCESTRAL SPECIES	13	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000176186	ENSGT00970000198420	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Tongue sole	MODERN SPECIES	14	ENSCSEG00000016834	itpkcb (ENSCSEG00000016865)	zgc:153119 (ENSCSEG00000016876)	snrpa (ENSCSEG00000016885)	ENSCSEG00000016902	ENSCSEG00000016906	clasrp (ENSCSEG00000016914)	ENSCSEG00000016942	ENSCSEG00000016961	fosb (ENSCSEG00000016998) #13	si:ch211-160d20.3 (ENSCSEG00000017015)	ttc9b (ENSCSEG00000017019)	MAP3K10 (ENSCSEG00000017025)	SIPA1L3 (ENSCSEG00000017030)	rrm1 (ENSCSEG00000017062)	qpctla (ENSCSEG00000017073) #22	gfm1 (ENSCSEG00000017088)	lxn (ENSCSEG00000017122)	neu4 (ENSCSEG00000017140)	WDR53 (ENSCSEG00000017189)	srprb (ENSCSEG00000017194)	COL26A1 (ENSCSEG00000017240)	FUT4 (ENSCSEG00000017250)	cux1b (ENSCSEG00000017266)	ENSCSEG00000017320	SH2B2 (ENSCSEG00000017330)	ENSCSEG00000017357	bud23 (ENSCSEG00000017365)	STX1A (ENSCSEG00000017402)	ENSCSEG00000017622	aifm4 (ENSCSEG00000017641)
Turbot	MODERN SPECIES	15	neu4 (ENSSMAG00000013215)	ENSSMAG00000013268	GFM1 (ENSSMAG00000013221)	itpkcb (ENSSMAG00000013282)	zgc:153119 (ENSSMAG00000013292)	snrpa (ENSSMAG00000013304)	ENSSMAG00000013310	ENSSMAG00000021608	ENSSMAG00000013458	fosb (ENSSMAG00000022859) #13	si:ch211-160d20.3 (ENSSMAG00000033549)	ttc9b (ENSSMAG00000013743)	ENSSMAG00000013747	ENSSMAG00000013788	ENSSMAG00000013821	qpctla (ENSSMAG00000013839) #22	six5 (ENSSMAG00000013852)	tbcb (ENSSMAG00000013857)	clptm1 (ENSSMAG00000013869)	ENSSMAG00000013895	mrpl28 (ENSSMAG00000013912)	ENSSMAG00000013935	ppp1r37 (ENSSMAG00000013943)	ENSSMAG00000013968	bmp16 (ENSSMAG00000014001)	gemin7 (ENSSMAG00000014017)	ENSSMAG00000032057	calm3a (ENSSMAG00000034840)	ENSSMAG00000014044	ENSSMAG00000023018	ENSSMAG00000014108
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Perciformes	ANCESTRAL SPECIES	10	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00970000198420	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00550000074911	ENSGT00690000103941	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00970000198420	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Lumpfish	MODERN SPECIES	4	itpkcb (ENSCLMG00005016026)	zgc:153119 (ENSCLMG00005016025)	snrpa (ENSCLMG00005016024)	ENSCLMG00005016023	ENSCLMG00005016022	clasrp (ENSCLMG00005016015)	ENSCLMG00005016012	ENSCLMG00005016007	fosb (ENSCLMG00005016005) #13	si:ch211-160d20.3 (ENSCLMG00005016003)	ttc9b (ENSCLMG00005016001)	MAP3K10 (ENSCLMG00005015779)	ENSCLMG00005015757	ENSCLMG00005015756	RRM1 (ENSCLMG00005015755)	qpctla (ENSCLMG00005015754) #22	six9 (ENSCLMG00005015753)	six5 (ENSCLMG00005015752)	tbcb (ENSCLMG00005015750)	clptm1 (ENSCLMG00005015548)	ENSCLMG00005015546	mrpl28 (ENSCLMG00005015544)	ppp1r37 (ENSCLMG00005015351)	ENSCLMG00005015349	bmp16 (ENSCLMG00005015348)	gemin7 (ENSCLMG00005015347)	ENSCLMG00005015346	calm3a (ENSCLMG00005015297)	PTGIR (ENSCLMG00005015296)	ENSCLMG00005015295	ppm1na (ENSCLMG00005015264)
Stickleback	MODERN SPECIES		gfm1 (ENSGACG00000009864)	ENSGACG00000009863	itpkcb (ENSGACG00000009859)	zgc:153119 (ENSGACG00000009856)	snrpa (ENSGACG00000009838)	ENSGACG00000009835	ENSGACG00000009834	clasrp (ENSGACG00000009826)	ENSGACG00000009801	fosb (ENSGACG00000009792) #13	si:ch211-160d20.3 (ENSGACG00000009786)	ttc9b (ENSGACG00000009784)	MAP3K10 (ENSGACG00000009773)	SIPA1L3 (ENSGACG00000009761)	rrm1 (ENSGACG00000009741)	qpctla (ENSGACG00000009732) #22	six9 (ENSGACG00000009726)	six5 (ENSGACG00000009721)	tbcb (ENSGACG00000009693)	clptm1 (ENSGACG00000009668)	RELB (ENSGACG00000009656)	mrpl28 (ENSGACG00000009641)	ENSGACG00000009639	ppp1r37 (ENSGACG00000009629)	ENSGACG00000009625	bmp16 (ENSGACG00000009621)	gemin7 (ENSGACG00000009619)	ENSGACG00000009610	ENSGACG00000009604	PTGIR (ENSGACG00000009600)	ppm1na (ENSGACG00000009594)
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00970000198420	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
Pike perch	MODERN SPECIES	133	WDR53 (ENSSLUG00000009490)	neu4 (ENSSLUG00000009497)	gfm1 (ENSSLUG00000009543)	lxn (ENSSLUG00000010832)	itpkcb (ENSSLUG00000010835)	zgc:153119 (ENSSLUG00000010839)	snrpa (ENSSLUG00000010843)	clasrp (ENSSLUG00000010852)	ENSSLUG00000010871	fosb (ENSSLUG00000010881) #13	si:ch211-160d20.3 (ENSSLUG00000010883)	ttc9b (ENSSLUG00000010887)	MAP3K10 (ENSSLUG00000010889)	SIPA1L3 (ENSSLUG00000010903)	rrm1 (ENSSLUG00000010952)	qpctla (ENSSLUG00000010967) #22	six9 (ENSSLUG00000010982)	six5 (ENSSLUG00000010996)	tbcb (ENSSLUG00000011003)	clptm1 (ENSSLUG00000011013)	RELB (ENSSLUG00000011027)	mrpl28 (ENSSLUG00000011031)	ENSSLUG00000011033	ppp1r37 (ENSSLUG00000011048)	ENSSLUG00000011311	bmp16 (ENSSLUG00000011313)	gemin7 (ENSSLUG00000011316)	ENSSLUG00000011318	calm3a (ENSSLUG00000011325)	PTGIR (ENSSLUG00000011390)	ENSSLUG00000011393
Channel bull blenny	MODERN SPECIES	4	lxn (ENSCGOG00000010250)	gfm1 (ENSCGOG00000009848)	itpkcb (ENSCGOG00000009819)	zgc:153119 (ENSCGOG00000009814)	snrpa (ENSCGOG00000009785)	ENSCGOG00000009782	clasrp (ENSCGOG00000009636)	ENSCGOG00000009633	ENSCGOG00000009605	fosb (ENSCGOG00000009598) #13	si:ch211-160d20.3 (ENSCGOG00000009586)	ttc9b (ENSCGOG00000009584)	MAP3K10 (ENSCGOG00000009579)	SIPA1L3 (ENSCGOG00000009564)	rrm1 (ENSCGOG00000009549)	qpctla (ENSCGOG00000009543) #22	six9 (ENSCGOG00000009534)	six5 (ENSCGOG00000009530)	tbcb (ENSCGOG00000009526)	clptm1 (ENSCGOG00000009254)	ENSCGOG00000009248	mrpl28 (ENSCGOG00000009242)	ppp1r37 (ENSCGOG00000009023)	ENSCGOG00000008976	bmp16 (ENSCGOG00000008973)	gemin7 (ENSCGOG00000008969)	ENSCGOG00000008960	calm3a (ENSCGOG00000008787)	PTGIR (ENSCGOG00000008783)	ENSCGOG00000008778	ppm1na (ENSCGOG00000008707)
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255
European seabass	MODERN SPECIES	3	ENSDLAG00005001159	itpkcb (ENSDLAG00005001116)	ENSDLAG00005035057	snrpa (ENSDLAG00005001109)	clasrp (ENSDLAG00005000998)	znf296 (ENSDLAG00005000969)	ENSDLAG00005000961	fosb (ENSDLAG00005000957) #13	si:ch211-160d20.3 (ENSDLAG00005000954)	ttc9b (ENSDLAG00005034348)	ENSDLAG00005000951	ENSDLAG00005000900	ENSDLAG00005000877	six9 (ENSDLAG00005000868)	ENSDLAG00005030159	ENSDLAG00005029683 #22	clptm1 (ENSDLAG00005000842)	ENSDLAG00005000830	mrpl28 (ENSDLAG00005000825)	ENSDLAG00005000818	ppp1r37 (ENSDLAG00005000772)	ENSDLAG00005000758	bmp16 (ENSDLAG00005000755)	gemin7 (ENSDLAG00005000753)	ENSDLAG00005000747	calm3a (ENSDLAG00005000735)	ENSDLAG00005000729	ENSDLAG00005000727	ppm1na (ENSDLAG00005027240)	rtn2a (ENSDLAG00005000721)	rhoub (ENSDLAG00005000718)
Large yellow croaker	MODERN SPECIES	479	lxn (ENSLCRG00005004053)	gfm1 (ENSLCRG00005003672)	itpkcb (ENSLCRG00005003665)	zgc:153119 (ENSLCRG00005003664)	snrpa (ENSLCRG00005003660)	ENSLCRG00005003659	clasrp (ENSLCRG00005003647)	znf296 (ENSLCRG00005003645)	ENSLCRG00005003641	fosb (ENSLCRG00005003639) #13	si:ch211-160d20.3 (ENSLCRG00005003638)	ttc9b (ENSLCRG00005003637)	MAP3K10 (ENSLCRG00005003626)	SIPA1L3 (ENSLCRG00005003625)	rrm1 (ENSLCRG00005003624)	qpctla (ENSLCRG00005003621) #22	six9 (ENSLCRG00005003617)	six5 (ENSLCRG00005003615)	tbcb (ENSLCRG00005003612)	clptm1 (ENSLCRG00005002992)	ENSLCRG00005002970	mrpl28 (ENSLCRG00005002966)	ENSLCRG00005002964	ppp1r37 (ENSLCRG00005002828)	ENSLCRG00005002809	bmp16 (ENSLCRG00005002805)	gemin7 (ENSLCRG00005002804)	ENSLCRG00005002799	calm3a (ENSLCRG00005002706)	PTGIR (ENSLCRG00005002699)	ENSLCRG00005002691
Gilthead seabream	MODERN SPECIES	11	gfm1 (ENSSAUG00010011206)	ENSSAUG00010013319	itpkcb (ENSSAUG00010013321)	zgc:153119 (ENSSAUG00010013323)	snrpa (ENSSAUG00010013326)	ENSSAUG00010013328	clasrp (ENSSAUG00010013334)	znf296 (ENSSAUG00010013335)	ENSSAUG00010013339	fosb (ENSSAUG00010013351) #13	si:ch211-160d20.3 (ENSSAUG00010013355)	ttc9b (ENSSAUG00010013357)	MAP3K10 (ENSSAUG00010013359)	SIPA1L3 (ENSSAUG00010013365)	rrm1 (ENSSAUG00010013384)	qpctla (ENSSAUG00010013389) #22	six9 (ENSSAUG00010013391)	six5 (ENSSAUG00010013392)	tbcb (ENSSAUG00010013393)	clptm1 (ENSSAUG00010013398)	ENSSAUG00010013594	mrpl28 (ENSSAUG00010013627)	ENSSAUG00010013629	ENSSAUG00010013630	ppp1r37 (ENSSAUG00010013635)	ENSSAUG00010013745	bmp16 (ENSSAUG00010013747)	gemin7 (ENSSAUG00010013748)	ENSSAUG00010013752	calm3a (ENSSAUG00010013755)	PTGIR (ENSSAUG00010013890)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	3436															ENSLBEG00000008637	qpctla (ENSLBEG00000008659) #22
Ballan wrasse	MODERN SPECIES	85	ENSLBEG00000021391	gfm1 (ENSLBEG00000021315)	itpkcb (ENSLBEG00000021268)	zgc:153119 (ENSLBEG00000021241)	snrpa (ENSLBEG00000021206)	ENSLBEG00000021184	clasrp (ENSLBEG00000021054)	znf296 (ENSLBEG00000021012)	ENSLBEG00000020968	fosb (ENSLBEG00000020922) #13	si:ch211-160d20.3 (ENSLBEG00000020892)	ttc9b (ENSLBEG00000020881)	MAP3K10 (ENSLBEG00000020790)	SIPA1L3 (ENSLBEG00000020711)	rrm1 (ENSLBEG00000020680)	qpctla (ENSLBEG00000020656) #22	six9 (ENSLBEG00000020636)	six5 (ENSLBEG00000020607)	tbcb (ENSLBEG00000020576)	clptm1 (ENSLBEG00000020545)	ENSLBEG00000020525	mrpl28 (ENSLBEG00000020499)	ENSLBEG00000020482	ppp1r37 (ENSLBEG00000020442)	ENSLBEG00000020425	bmp16 (ENSLBEG00000020398)	gemin7 (ENSLBEG00000020367)
Tetraodontidae	ANCESTRAL SPECIES	10	ENSGT00530000063813.b	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00940000159183	ENSGT00910000144246.b.c.a	ENSGT00390000003107.b.j #22	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000153118	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00940000166868.b	ENSGT00950000182980.a.b.b.a.b.b	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a
Fugu	MODERN SPECIES	2	ENSTRUG00000013711	ENSTRUG00000005429	ENSTRUG00000025692	ENSTRUG00000022026	ENSTRUG00000025454	ift80 (ENSTRUG00000007555)	smc4 (ENSTRUG00000006919)	ENSTRUG00000023902	kpna4 (ENSTRUG00000006532)	ENSTRUG00000006444	PPM1L (ENSTRUG00000006341)	nmd3 (ENSTRUG00000005958)	sptssb (ENSTRUG00000005949)	ENSTRUG00000007971	rrm1 (ENSTRUG00000025075)	qpctla (ENSTRUG00000005097) #22	il12a (ENSTRUG00000005051)	schip1 (ENSTRUG00000004730)	MFSD1 (ENSTRUG00000003984)	ENSTRUG00000003287	ENSTRUG00000021517	p2ry12 (ENSTRUG00000029128)	ENSTRUG00000030386	IGSF10 (ENSTRUG00000003114)	AADAC (ENSTRUG00000002562)	SUCNR1 (ENSTRUG00000002395)	MBNL1 (ENSTRUG00000022652)	P2RY1 (ENSTRUG00000001676)	RAP2B (ENSTRUG00000013947)	ARHGEF26 (ENSTRUG00000001394)	dhx36 (ENSTRUG00000001230)
Tetraodon	MODERN SPECIES	8	lxn (ENSTNIG00000007728)	gfm1 (ENSTNIG00000007729)	itpkcb (ENSTNIG00000007730)	zgc:153119 (ENSTNIG00000007731)	snrpa (ENSTNIG00000007732)	ENSTNIG00000001695	ENSTNIG00000007733	clasrp (ENSTNIG00000007734)	znf296 (ENSTNIG00000001568)	fosb (ENSTNIG00000007735) #13	si:ch211-160d20.3 (ENSTNIG00000007736)	ttc9b (ENSTNIG00000007737)	MAP3K10 (ENSTNIG00000007738)	SIPA1L3 (ENSTNIG00000007739)	rrm1 (ENSTNIG00000007740)	qpctla (ENSTNIG00000007741) #22	six5 (ENSTNIG00000007742)	tbcb (ENSTNIG00000007743)	clptm1 (ENSTNIG00000007744)	RELB (ENSTNIG00000007745)	mrpl28 (ENSTNIG00000007746)	ENSTNIG00000000961	ppp1r37 (ENSTNIG00000007747)	ENSTNIG00000007748	bmp16 (ENSTNIG00000007749)	calm3b (ENSTNIG00000007750)	PTGIR (ENSTNIG00000001391)	ppm1na (ENSTNIG00000007751)	rtn2a (ENSTNIG00000000564)	rhoub (ENSTNIG00000007752)	rab4b (ENSTNIG00000007753)
Pinecone sodierfish	MODERN SPECIES	4	neu4 (ENSMMDG00005008456)	lxn (ENSMMDG00005008453)	gfm1 (ENSMMDG00005006954)	itpkcb (ENSMMDG00005006936)	zgc:153119 (ENSMMDG00005006935)	snrpa (ENSMMDG00005006933)	ENSMMDG00005006930	clasrp (ENSMMDG00005006909)	znf296 (ENSMMDG00005006905)	ENSMMDG00005006750	fosb (ENSMMDG00005006738) #13	si:ch211-160d20.3 (ENSMMDG00005006736)	ttc9b (ENSMMDG00005006734)	MAP3K10 (ENSMMDG00005006720)	rrm1 (ENSMMDG00005006713)	qpctla (ENSMMDG00005006712) #22	ENSMMDG00005006711	ENSMMDG00005006709	tbcb (ENSMMDG00005006708)	clptm1 (ENSMMDG00005005563)	ENSMMDG00005005543	mrpl28 (ENSMMDG00005005538)	ppp1r37 (ENSMMDG00005005222)	bmp16 (ENSMMDG00005004472)	gemin7 (ENSMMDG00005014211)	ENSMMDG00005014207	calm3a (ENSMMDG00005014140)	PTGIR (ENSMMDG00005014135)	ENSMMDG00005014132	ppm1na (ENSMMDG00005014038)	ENSMMDG00005014036
Cod	MODERN SPECIES	7	ENSGMOG00000010161	itpkcb (ENSGMOG00000025135)	zgc:153119 (ENSGMOG00000033186)	snrpa (ENSGMOG00000010128)	ENSGMOG00000033386	ENSGMOG00000030397	clasrp (ENSGMOG00000007125)	znf296 (ENSGMOG00000029576)	fosb (ENSGMOG00000026411) #13	ENSGMOG00000023238	si:ch211-160d20.3 (ENSGMOG00000024198)	ttc9b (ENSGMOG00000029823)	ENSGMOG00000022368	ENSGMOG00000008076	ENSGMOG00000008073	qpctla (ENSGMOG00000008069) #22	six9 (ENSGMOG00000022851)	six5 (ENSGMOG00000036551)	tbcb (ENSGMOG00000008064)	ENSGMOG00000008056	ENSGMOG00000014662	ENSGMOG00000015396	ENSGMOG00000025754	ENSGMOG00000002758	ENSGMOG00000004979	ENSGMOG00000024729	ENSGMOG00000027223	ENSGMOG00000005925	ENSGMOG00000031972	ENSGMOG00000024980	ENSGMOG00000030227
Protacanthopterygii	ANCESTRAL SPECIES	7	ENSGT00550000074911	ENSGT00940000160033.c	ENSGT00390000012368	ENSGT00390000007046.b.a.b	ENSGT00940000166445	ENSGT00940000181113	ENSGT00940000153892.A	ENSGT00940000160667	ENSGT00940000166395	ENSGT00940000160358 #13	ENSGT00390000005773	ENSGT00940000161494	ENSGT00940000160518	ENSGT00530000063583.a.a.b	ENSGT00940000159183	ENSGT00390000003107.b.j #22	ENSGT00940000158292.b	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B	ENSGT00940000160230	ENSGT00390000017359	ENSGT00940000156484.a	ENSGT00940000157454	ENSGT00940000155666.d	ENSGT00390000018039	ENSGT00950000182980.a.b.b.a.b.b.c	ENSGT01050000244902.b.d	ENSGT00940000167255	ENSGT00940000164695.a	ENSGT00940000167260
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	26	ENSGT00940000160033.c.e	ENSGT00390000012368	ENSGT00390000007046.b.a.b.c	ENSGT00940000166445.a.a	ENSGT00940000181113	ENSGT00940000166445.b	ENSGT00940000153892.A.g.a	ENSGT00940000166395.c.a.a	ENSGT00940000166395.d	ENSGT00940000160358.l.a #13	ENSGT00390000005773.d	ENSGT00940000161494.i.b	ENSGT00940000160518.b	ENSGT00530000063583.a.a.b	ENSGT00940000159183.u.a	ENSGT00390000003107.b.j.g #22	ENSGT00940000158292.b.f	ENSGT00940000167410	ENSGT01010000224936	ENSGT00530000063461.B.a	ENSGT00940000160230.m.b	ENSGT00390000017359.k	ENSGT00940000156484.a.c	ENSGT00940000157454.rc.b	ENSGT00940000155666.d.a	ENSGT00390000018039.p	ENSGT00950000182980.a.b.b.a.b.b.c.b	ENSGT01050000244902.b.d.e	ENSGT00940000167255	ENSGT00940000164695.a.g	ENSGT00940000167260.c
Salmoninae_a	ANCESTRAL SPECIES	19	ENSGT00390000012368	ENSGT00390000007046.b.a.b.c	ENSGT00940000166445.a.a	ENSGT00940000166445.b	ENSGT00940000153892.A.g.a	ENSGT00940000160667.e.a	ENSGT00940000166395.c.a.a	ENSGT00940000160358.l.a #13	ENSGT00940000166395.c.b	ENSGT00940000160358.k.b #13	ENSGT00390000005773.d	ENSGT00940000161494.j	ENSGT00940000160518.b	ENSGT00530000063583.a.a.b	ENSGT00940000159183.u.a	ENSGT00390000003107.b.j.g #22	ENSGT00940000158292.b.f	ENSGT00940000166238.a.d	ENSGT00940000167410	ENSGT01010000224936	ENSGT00530000063461.B.a	ENSGT00940000160230.m.a.a	ENSGT00390000017359.k	ENSGT00940000156484.a.c	ENSGT00940000157454.rc.b	ENSGT00940000155666.d.a	ENSGT00390000018039.p	ENSGT00950000182980.a.b.b.a.b.b.c.b	ENSGT01050000244902.b.d.e	ENSGT00940000167255	ENSGT00940000164695.a.g
Salmo	ANCESTRAL SPECIES	7	ENSGT00940000160033.c.e	ENSGT00390000012368.g	ENSGT00390000007046.b.a.b.c	ENSGT00940000166445.a.a	ENSGT00940000166445.b	ENSGT00940000153892.A.g.a	ENSGT00940000160667.e.a	ENSGT00940000166395.c.a.a	ENSGT00940000160358.l.a #13	ENSGT00940000160358.k.b #13	ENSGT00390000005773.d	ENSGT00940000161494.i.b	ENSGT00940000160518.b	ENSGT00530000063583.a.a.b	ENSGT00940000159183.u.a	ENSGT00390000003107.b.j.g #22	ENSGT00940000158292.b.f	ENSGT00940000167410	ENSGT01010000224936	ENSGT00530000063461.B.a	ENSGT00940000160230.m.b	ENSGT00390000017359.k	ENSGT00940000156484.a.c	ENSGT00940000157454.rc.b	ENSGT00940000155666.d.a	ENSGT00390000018039.p	ENSGT00940000164310	ENSGT01050000244902.b.d.e	ENSGT00940000167255	ENSGT00940000164695.a.g	ENSGT00940000167260.c
Atlantic salmon	MODERN SPECIES	12	snrpa (ENSSSAG00000092131)	ENSSSAG00000082985	ENSSSAG00000071001	clasrp (ENSSSAG00000089556)	znf296 (ENSSSAG00000107701)	ENSSSAG00000116840	ENSSSAG00000107905	ENSSSAG00000094378	ENSSSAG00000105572	fosb (ENSSSAG00000082224) #13	si:ch211-160d20.3 (ENSSSAG00000110319)	ttc9b (ENSSSAG00000102019)	ENSSSAG00000086137	ENSSSAG00000111446	ENSSSAG00000092226	qpctla (ENSSSAG00000105705) #22	six9 (ENSSSAG00000005368)	ENSSSAG00000089760	ENSSSAG00000118598	clptm1 (ENSSSAG00000099001)	ENSSSAG00000121301	ENSSSAG00000092258	RM28 (ENSSSAG00000120657)	ENSSSAG00000119715	ppp1r37 (ENSSSAG00000120388)	bmp16 (ENSSSAG00000108574)	gemin7 (ENSSSAG00000099823)	ENSSSAG00000097830	ENSSSAG00000005656	ENSSSAG00000096827	ENSSSAG00000083390
River trout	MODERN SPECIES	18	hmbsb (ENSSTUG00000008111)	ARCN1 (ENSSTUG00000008175)	lxn (ENSSTUG00000008233)	ENSSTUG00000008245	itpkcb (ENSSTUG00000008267)	zgc:153119 (ENSSTUG00000008278)	snrpa (ENSSTUG00000008285)	ENSSTUG00000008294	znf296 (ENSSTUG00000008298)	ENSSTUG00000008312	fosb (ENSSTUG00000008418) #13	si:ch211-160d20.3 (ENSSTUG00000008436)	ttc9b (ENSSTUG00000008447)	MAP3K10 (ENSSTUG00000008456)	SIPA1L3 (ENSSTUG00000008489)	qpctla (ENSSTUG00000008678) #22	six9 (ENSSTUG00000008686)	ENSSTUG00000008690	ENSSTUG00000008698	clptm1 (ENSSTUG00000008777)	ENSSTUG00000009239	mrpl28 (ENSSTUG00000009251)	ENSSTUG00000009266	ppp1r37 (ENSSTUG00000009279)	bmp16 (ENSSTUG00000009389)	gemin7 (ENSSTUG00000009400)	ENSSTUG00000009441	PTGIR (ENSSTUG00000009559)	ENSSTUG00000009568	rtn2a (ENSSTUG00000009580)	ppm1na (ENSSTUG00000009641)
Oncorhynchus	ANCESTRAL SPECIES	24	ENSGT00940000160033.c.e	ENSGT00390000012368	ENSGT00390000007046.b.a.b.c	ENSGT00940000166445.a.a	ENSGT00940000166445.b	ENSGT00940000153892.A.g.a	ENSGT00940000160667.e.a	ENSGT00940000166395.c.a.a	ENSGT00940000166395.c.b	ENSGT00940000160358.k.b #13	ENSGT00390000005773.d	ENSGT00940000161494.j.b	ENSGT00940000160518.b	ENSGT00940000174677	ENSGT00940000159183.u.a	ENSGT00390000003107.b.j.g #22	ENSGT00940000158292.b.f	ENSGT00940000166238.a.d	ENSGT01010000224936	ENSGT00530000063461.B.a	ENSGT00940000160230.m.a.a	ENSGT00390000017359.k	ENSGT00940000156484.a.c	ENSGT00940000157454.rc.b	ENSGT00940000155666.d.a	ENSGT00390000018039.p	ENSGT00950000182980.a.b.b.a.b.b.c.b	ENSGT01050000244902.b.d.e	ENSGT00940000167255	ENSGT00940000164695.a.g	ENSGT00940000167260.c
Oncorhynchus_a	ANCESTRAL SPECIES	59	ENSGT00550000074911.d	ENSGT00940000160033.c.e	ENSGT00390000012368	ENSGT00390000007046.b.a.b.c	ENSGT00940000166445.a.a	ENSGT00940000153892.A.g.a	ENSGT00940000160667.e.a	ENSGT00940000166395.c.a.a	ENSGT00940000166395.c.b	ENSGT00940000160358.k.b #13	ENSGT00390000005773.d	ENSGT00940000161494.j.b	ENSGT00940000160518.b	ENSGT00940000174677	ENSGT00940000159183.u.a	ENSGT00390000003107.b.j.g #22	ENSGT00940000158292.b.f	ENSGT00940000166238.a.d	ENSGT01010000224936	ENSGT00530000063461.B.a	ENSGT00940000160230.m.a.a	ENSGT00390000017359.k	ENSGT00940000156484.a.c	ENSGT00940000157454.rc.b	ENSGT00940000155666.d.a	ENSGT00390000018039.p	ENSGT00950000182980.a.b.b.a.b.b.c.b	ENSGT01050000244902.b.d.e	ENSGT00940000167255	ENSGT00940000164695.a.g	ENSGT00940000167260.c
Coho salmon	MODERN SPECIES	6	ARCN1 (ENSOKIG00005008076)	ENSOKIG00005008650	ENSOKIG00005008678	itpkcb (ENSOKIG00005008706)	zgc:153119 (ENSOKIG00005008729)	snrpa (ENSOKIG00005008738)	clasrp (ENSOKIG00005008778)	znf296 (ENSOKIG00005008863)	ENSOKIG00005008881	ENSOKIG00005008926	fosb (ENSOKIG00005009064) #13	si:ch211-160d20.3 (ENSOKIG00005009070)	ttc9b (ENSOKIG00005009081)	MAP3K10 (ENSOKIG00005009084)	SIPA1L3 (ENSOKIG00005009109)	qpctla (ENSOKIG00005009379) #22	six9 (ENSOKIG00005009386)	six5 (ENSOKIG00005009396)	ENSOKIG00005009406	clptm1 (ENSOKIG00005009484)	ENSOKIG00005010103	mrpl28 (ENSOKIG00005010118)	ENSOKIG00005010132	ppp1r37 (ENSOKIG00005010148)	bmp16 (ENSOKIG00005010205)	gemin7 (ENSOKIG00005010213)	ENSOKIG00005010216	ENSOKIG00005010225	PTGIR (ENSOKIG00005010261)	ENSOKIG00005010262	ppm1na (ENSOKIG00005010273)
Chinook salmon	MODERN SPECIES	2890	hmbsb (ENSOTSG00005022298)	lxn (ENSOTSG00005022350)	itpkcb (ENSOTSG00005022351)	zgc:153119 (ENSOTSG00005022352)	snrpa (ENSOTSG00005022353)	ENSOTSG00005022354	clasrp (ENSOTSG00005022355)	ENSOTSG00005022361	ENSOTSG00005022362	fosb (ENSOTSG00005022364) #13	si:ch211-160d20.3 (ENSOTSG00005022365)	ttc9b (ENSOTSG00005022366)	MAP3K10 (ENSOTSG00005022368)	ENSOTSG00005022369	SIPA1L3 (ENSOTSG00005022371)	qpctla (ENSOTSG00005022656) #22	six9 (ENSOTSG00005022658)	six5 (ENSOTSG00005022659)	ENSOTSG00005022660	clptm1 (ENSOTSG00005022668)	ENSOTSG00005024084	mrpl28 (ENSOTSG00005024086)	ENSOTSG00005024087	ppp1r37 (ENSOTSG00005024088)	bmp16 (ENSOTSG00005024153)	gemin7 (ENSOTSG00005024156)	wdr89 (ENSOTSG00005024157)
Rainbow trout	MODERN SPECIES	19	ENSOMYG00000021192	itpkcb (ENSOMYG00000021223)	zgc:153119 (ENSOMYG00000021241)	snrpa (ENSOMYG00000021260)	ENSOMYG00000066483	clasrp (ENSOMYG00000021327)	znf296 (ENSOMYG00000021387)	ENSOMYG00000067445	ENSOMYG00000021494	fosb (ENSOMYG00000021583) #13	si:ch211-160d20.3 (ENSOMYG00000021601)	ttc9b (ENSOMYG00000021609)	ENSOMYG00000021615	ENSOMYG00000048634	ENSOMYG00000021727	qpctla (ENSOMYG00000021787) #22	six9 (ENSOMYG00000021795)	six5 (ENSOMYG00000021802)	clptm1 (ENSOMYG00000021855)	ENSOMYG00000052183	ENSOMYG00000021944	mrpl28 (ENSOMYG00000021960)	ENSOMYG00000021974	ppp1r37 (ENSOMYG00000022054)	bmp16 (ENSOMYG00000022166)	gemin7 (ENSOMYG00000022172)	ENSOMYG00000022241	ENSOMYG00000022323	ENSOMYG00000022332	ppm1na (ENSOMYG00000022344)	RTN2 (ENSOMYG00000022377)
Huchen	MODERN SPECIES	31	snrpa (ENSHHUG00000002838)	ENSHHUG00000002861	ENSHHUG00000002864	ENSHHUG00000002879	clasrp (ENSHHUG00000002893)	ENSHHUG00000002919	ENSHHUG00000002931	ENSHHUG00000003030	fosb (ENSHHUG00000003106) #13	ENSHHUG00000003119	si:ch211-160d20.3 (ENSHHUG00000003122)	ttc9b (ENSHHUG00000003130)	MAP3K10 (ENSHHUG00000003138)	ENSHHUG00000003419	SIPA1L3 (ENSHHUG00000003454)	qpctla (ENSHHUG00000003623) #22	six9 (ENSHHUG00000003626)	ENSHHUG00000003630	ENSHHUG00000003632	clptm1 (ENSHHUG00000003638)	ENSHHUG00000003796	mrpl28 (ENSHHUG00000003803)	ENSHHUG00000003816	ppp1r37 (ENSHHUG00000003826)	bmp16 (ENSHHUG00000003835)	gemin7 (ENSHHUG00000003837)	ENSHHUG00000003845	PTGIR (ENSHHUG00000004308)	ENSHHUG00000004312	ppm1na (ENSHHUG00000004316)	rtn2a (ENSHHUG00000004319)
Salmoninae	ANCESTRAL SPECIES	228	ENSGT00550000074911.c	ENSGT00940000160033.c.f	ENSGT00390000007046.b.a.b.d	ENSGT00940000166445.a.b	ENSGT00940000153892.A.g.b	ENSGT00940000160667	ENSGT00940000166395.c.a.b	ENSGT00940000160358.l.b #13	ENSGT00940000166395.c.b	ENSGT00940000160358.k #13	ENSGT00390000005773.c	ENSGT00940000161494.i.a	ENSGT00940000161494.j	ENSGT00940000160518.a	ENSGT00940000159183.u.b	ENSGT00390000003107.b.j.h #22	ENSGT00940000158292.b.e	ENSGT00940000166238.a	ENSGT00940000156119	ENSGT00530000063461.B.b	ENSGT00940000160230.m.a.b	ENSGT00390000017359.l	ENSGT00940000156484.a.d	ENSGT00940000157454.rc.a	ENSGT00940000155666.d.b	ENSGT00390000018039.o	ENSGT00950000182980.a.b.b.a.b.b.c.a	ENSGT01050000244902.b.d.f	ENSGT00940000164695.a.h	ENSGT00940000167260.d	ENSGT00940000165900.c
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00390000009083.m.a.a	ENSGT00390000017207.i.a.g	ENSGT00530000063813.b.l	ENSGT00550000074911.c	ENSGT00940000160033.c.f	ENSGT00390000007046.b.a.b.d	ENSGT00940000166445.a.b	ENSGT00940000153892.A.g.b	ENSGT00940000160667.e.b	ENSGT00940000166395.c.a.b	ENSGT00940000160358.k.a #13	ENSGT00390000005773.c	ENSGT00940000161494.i.a	ENSGT00940000160518.a	ENSGT00940000159183.u.b	ENSGT00390000003107.b.j.h #22	ENSGT00940000158292.b.e	ENSGT00940000166238.a.c	ENSGT00940000156119	ENSGT00530000063461.B.b	ENSGT00940000160230.m.a.b	ENSGT00390000017359.l	ENSGT00940000156484.a.d	ENSGT00940000157454.rc.a	ENSGT00940000155666.d.b	ENSGT00390000018039.o	ENSGT00950000182980.a.b.b.a.b.b.c.a	ENSGT01050000244902.b.d.f	ENSGT00940000164695.a.h	ENSGT00940000167260.d	ENSGT00940000165900.c
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00390000009083.m.a.a	ENSGT00390000017207.i.a.g	ENSGT00530000063813.b.l	ENSGT00550000074911.c	ENSGT00940000160033.c.f	ENSGT00390000007046.b.a.b.d	ENSGT00940000166445.a.b	ENSGT00940000153892.A.g.b	ENSGT00940000160667.e.b	ENSGT00940000166395.c.a.b	ENSGT00940000160358.k.a #13	ENSGT00390000005773.c	ENSGT00940000161494.j.a	ENSGT00940000160518.a	ENSGT00940000159183.u.b	ENSGT00390000003107.b.j.h #22	ENSGT00940000158292.b.e	ENSGT00940000166238.a.c	ENSGT00940000156119	ENSGT00530000063461.B.b	ENSGT00940000160230.m.a.b	ENSGT00390000017359.l	ENSGT00940000156484.a.d	ENSGT00940000157454.rc.a	ENSGT00940000155666.d.b	ENSGT00950000182980.a.b.b.a.b.b.c.a	ENSGT01050000244902.b.d.f	ENSGT00940000164695.a.h	ENSGT00940000167260.d	ENSGT00940000165900.c	ENSGT00940000159399.c.b.a
Rainbow trout	MODERN SPECIES	16	ENSOMYG00000019920	ENSOMYG00000020024	ENSOMYG00000020081	ENSOMYG00000020298	ENSOMYG00000020310	clasrp (ENSOMYG00000020329)	znf296 (ENSOMYG00000020366)	ENSOMYG00000020371	fosb (ENSOMYG00000020392) #13	si:ch211-160d20.3 (ENSOMYG00000020409)	ENSOMYG00000049426	ttc9b (ENSOMYG00000020420)	ENSOMYG00000020429	ENSOMYG00000054962	ENSOMYG00000020470	qpctla (ENSOMYG00000052763) #22	six9 (ENSOMYG00000020796)	six5 (ENSOMYG00000020805)	tbcb (ENSOMYG00000020812)	clptm1 (ENSOMYG00000020917)	ENSOMYG00000029822	mrpl28 (ENSOMYG00000029790)	ENSOMYG00000029779	ENSOMYG00000029724	bmp16 (ENSOMYG00000029577)	ENSOMYG00000057538	ENSOMYG00000074800	ENSOMYG00000029527	ENSOMYG00000029461	ppm1na (ENSOMYG00000029447)	rtn2a (ENSOMYG00000029432)
Huchen	MODERN SPECIES	176	gfm1 (ENSHHUG00000034058)	itpkcb (ENSHHUG00000034046)	snrpa (ENSHHUG00000034030)	ENSHHUG00000034026	ENSHHUG00000034023	ENSHHUG00000034013	clasrp (ENSHHUG00000034006)	ENSHHUG00000034000	ENSHHUG00000033975	ENSHHUG00000033892	fosb (ENSHHUG00000033886) #13	si:ch211-160d20.3 (ENSHHUG00000033882)	ttc9b (ENSHHUG00000033877)	MAP3K10 (ENSHHUG00000033767)	SIPA1L3 (ENSHHUG00000033665)	qpctla (ENSHHUG00000033633) #22	six9 (ENSHHUG00000033628)	six5 (ENSHHUG00000033626)	tbcb (ENSHHUG00000033618)	clptm1 (ENSHHUG00000033506)	ENSHHUG00000033503	ENSHHUG00000033497
Northern pike	MODERN SPECIES		lxn (ENSELUG00000014745)	gfm1 (ENSELUG00000014728)	itpkcb (ENSELUG00000014694)	zgc:153119 (ENSELUG00000014679)	snrpa (ENSELUG00000014644)	clasrp (ENSELUG00000014585)	znf296 (ENSELUG00000014521)	ENSELUG00000014512	fosb (ENSELUG00000014466) #13	si:ch211-160d20.3 (ENSELUG00000014444)	ttc9b (ENSELUG00000014424)	MAP3K10 (ENSELUG00000014411)	ENSELUG00000014393	SIPA1L3 (ENSELUG00000014332)	ENSELUG00000028314	qpctla (ENSELUG00000014266) #22	six9 (ENSELUG00000014253)	six5 (ENSELUG00000014235)	tbcb (ENSELUG00000014206)	clptm1 (ENSELUG00000014159)	ENSELUG00000000515	mrpl28 (ENSELUG00000014104)	ENSELUG00000014075	ppp1r37 (ENSELUG00000000513)	bmp16 (ENSELUG00000014051)	gemin7 (ENSELUG00000014034)	ENSELUG00000014007	PTGIR (ENSELUG00000013943)	ENSELUG00000013934	ppm1na (ENSELUG00000013890)	rtn2a (ENSELUG00000013859)
Spotted gar	MODERN SPECIES	658	ENSLOCG00000017723	polr1g (ENSLOCG00000014803) #11	nova2 (ENSLOCG00000014804)	foxa3 (ENSLOCG00000014809)	PLD3 (ENSLOCG00000014810)	HIPK4 (ENSLOCG00000014812)	ENSLOCG00000014813	polr2i (ENSLOCG00000014818)	ENSLOCG00000014822	pglyrp5 (ENSLOCG00000014823) #36	ENSLOCG00000017724	snrpd2 (ENSLOCG00000014824) #21	ENSLOCG00000014827	ppp5c (ENSLOCG00000014828)	wdr62 (ENSLOCG00000014830)	qpctla (ENSLOCG00000014833) #22	ENSLOCG00000014838	six5 (ENSLOCG00000014840)	tbcb (ENSLOCG00000014843)	ENSLOCG00000017725	clptm1 (ENSLOCG00000014846)	RELB (ENSLOCG00000014849)	mrpl28 (ENSLOCG00000014850)	ENSLOCG00000014853	ENSLOCG00000014855	si:ch211-191j22.3 (ENSLOCG00000014856)	ppp1r37 (ENSLOCG00000014857)	bmp16 (ENSLOCG00000014862)	gemin7 (ENSLOCG00000017726)	ENSLOCG00000014864	ENSLOCG00000014867
Reedfish	MODERN SPECIES		ENSECRG00000000067	SIPA1L3 (ENSECRG00000000066)	MAP3K10 (ENSECRG00000000065)	ttc9b (ENSECRG00000000064)	si:ch211-160d20.3 (ENSECRG00000000063)	ccnp (ENSECRG00000000062)	akt2 (ENSECRG00000000061)	polr2i (ENSECRG00000000060)	ENSECRG00000000059	pglyrp5 (ENSECRG00000000058) #36	snrpd2 (ENSECRG00000000056) #21	ENSECRG00000000055	ENSECRG00000000054 #16	ENSECRG00000000053 #35	ENSECRG00000000052	qpctla (ENSECRG00000000051) #22	six5 (ENSECRG00000000050)	hif1al (ENSECRG00000000049)	opa3 (ENSECRG00000000048) #17	ENSECRG00000000046	clptm1 (ENSECRG00000000045)	tbcb (ENSECRG00000000044)	ENSECRG00000000043	ENSECRG00000000042 ##28	RSPH4A (ENSECRG00000000041) ##28	SYMPK (ENSECRG00000000040) #29	gemin7 (ENSECRG00000000039)	bmp16 (ENSECRG00000000038)	PTGIR (ENSECRG00000000037)	ENSECRG00000000036	ENSECRG00000000035