Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00390000006564	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT01030000234916	ENSGT00550000074784.a.b ##32	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##32
Glires	ANCESTRAL SPECIES	7	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT01030000234916	ENSGT00550000074784.a.b ##32	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##32
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT01030000234916	ENSGT00550000074784.a.b ##32	ENSGT00960000186730	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00960000186730	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00960000186730	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00960000186730	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00960000186730.a	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35
Murinae	ANCESTRAL SPECIES	24	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01070000254013 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Mus	ANCESTRAL SPECIES	22	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01070000254013 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01070000254013 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000165493	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01070000254013 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634.c #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000165493	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36
Mouse	MODERN SPECIES	4	Skic3 (ENSMUSG00000033991) #7	Fam81b (ENSMUSG00000109228) #8	Mctp1 (ENSMUSG00000021596) #9	Slf1 (ENSMUSG00000021597) #10	2210408I21Rik (ENSMUSG00000071252) #11	Fam172a (ENSMUSG00000064138) #12	Pou5f2 (ENSMUSG00000093668) #13	Nr2f1 (ENSMUSG00000069171) #14	Arrdc3 (ENSMUSG00000074794) #15	Adgrv1 (ENSMUSG00000069170) #16	Lysmd3 (ENSMUSG00000035840) #17	Polr3g (ENSMUSG00000035834) #18	Mblac2 (ENSMUSG00000051098) #19	Cetn3 (ENSMUSG00000021537) #20	Mef2c (ENSMUSG00000005583) #21	Tmem161b (ENSMUSG00000035762) #22	Ccnh (ENSMUSG00000021548) #23	Rasa1 (ENSMUSG00000021549) #24	Cox7c (ENSMUSG00000017778) #25	Edil3 (ENSMUSG00000034488) #26	Hapln1 (ENSMUSG00000021613) #27	Vcan (ENSMUSG00000021614) #28	Xrcc4 (ENSMUSG00000021615) #29	Tmem167 (ENSMUSG00000012422) #30	Atp6ap1l (ENSMUSG00000078958) #31	Rps23 (ENSMUSG00000049517) #32	Atg10 (ENSMUSG00000021619) #33	Ssbp2 (ENSMUSG00000003992) #34	Acot12 (ENSMUSG00000021620) #35	Zcchc9 (ENSMUSG00000021621) #36	Ckmt2 (ENSMUSG00000021622) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01070000254013 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634.c #23	ENSGT00940000155846 #24	ENSGT01030000235102	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000165493	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36
spretus	MODERN SPECIES	4	Arsk (MGP_SPRETEiJ_G0019617)	Skic3 (MGP_SPRETEiJ_G0019618) #7	Mctp1 (MGP_SPRETEiJ_G0019619) #9	Slf1 (MGP_SPRETEiJ_G0019620) #10	2210408I21Rik (MGP_SPRETEiJ_G0019621) #11	Fam172a (MGP_SPRETEiJ_G0019622) #12	Pou5f2 (MGP_SPRETEiJ_G0019623) #13	Nr2f1 (MGP_SPRETEiJ_G0019624) #14	Arrdc3 (MGP_SPRETEiJ_G0019625) #15	Adgrv1 (MGP_SPRETEiJ_G0019626) #16	Lysmd3 (MGP_SPRETEiJ_G0019627) #17	Polr3g (MGP_SPRETEiJ_G0019628) #18	Mblac2 (MGP_SPRETEiJ_G0019629) #19	Cetn3 (MGP_SPRETEiJ_G0019630) #20	Mef2c (MGP_SPRETEiJ_G0019631) #21	Tmem161b (MGP_SPRETEiJ_G0019632) #22	Ccnh (MGP_SPRETEiJ_G0019633) #23	Rasa1 (MGP_SPRETEiJ_G0019634) #24	MGP_SPRETEiJ_G0019635	Edil3 (MGP_SPRETEiJ_G0019636) #26	Hapln1 (MGP_SPRETEiJ_G0019637) #27	Vcan (MGP_SPRETEiJ_G0019638) #28	Xrcc4 (MGP_SPRETEiJ_G0019639) #29	Tmem167 (MGP_SPRETEiJ_G0019640) #30	MGP_SPRETEiJ_G0019641	Atp6ap1l (MGP_SPRETEiJ_G0019642) #31	Rps23 (MGP_SPRETEiJ_G0019643) #32	Atg10 (MGP_SPRETEiJ_G0019644) #33	MGP_SPRETEiJ_G0019645	Ssbp2 (MGP_SPRETEiJ_G0019646) #34	Acot12 (MGP_SPRETEiJ_G0019647) #35
Steppe mouse	MODERN SPECIES	3320					Arrdc3 (ENSMSIG00000019683) #15	ENSMSIG00000019668	Adgrv1 (ENSMSIG00000019252) #16	Lysmd3 (ENSMSIG00000019227) #17	Polr3g (ENSMSIG00000019198) #18	Mblac2 (ENSMSIG00000019189) #19	Cetn3 (ENSMSIG00000019161) #20	Mef2c (ENSMSIG00000018916) #21	ENSMSIG00000018899	ENSMSIG00000018875	ENSMSIG00000018837	Tmem161b (ENSMSIG00000018760) #22
Ryukyu mouse	MODERN SPECIES	4	Arsk (MGP_CAROLIEiJ_G0018734)	Skic3 (MGP_CAROLIEiJ_G0018735) #7	Mctp1 (MGP_CAROLIEiJ_G0018736) #9	Slf1 (MGP_CAROLIEiJ_G0018737) #10	2210408I21Rik (MGP_CAROLIEiJ_G0018738) #11	Fam172a (MGP_CAROLIEiJ_G0018739) #12	Pou5f2 (MGP_CAROLIEiJ_G0018740) #13	Nr2f1 (MGP_CAROLIEiJ_G0018741) #14	Arrdc3 (MGP_CAROLIEiJ_G0018742) #15	Adgrv1 (MGP_CAROLIEiJ_G0018743) #16	Lysmd3 (MGP_CAROLIEiJ_G0018744) #17	Polr3g (MGP_CAROLIEiJ_G0018745) #18	Mblac2 (MGP_CAROLIEiJ_G0018746) #19	Cetn3 (MGP_CAROLIEiJ_G0018747) #20	Mef2c (MGP_CAROLIEiJ_G0018748) #21	Tmem161b (MGP_CAROLIEiJ_G0018749) #22	Ccnh (MGP_CAROLIEiJ_G0018750) #23	Rasa1 (MGP_CAROLIEiJ_G0018751) #24	Cox7c (MGP_CAROLIEiJ_G0018752) #25	Edil3 (MGP_CAROLIEiJ_G0018753) #26	Hapln1 (MGP_CAROLIEiJ_G0018754) #27	Vcan (MGP_CAROLIEiJ_G0018755) #28	Xrcc4 (MGP_CAROLIEiJ_G0018756) #29	Tmem167 (MGP_CAROLIEiJ_G0018757) #30	MGP_CAROLIEiJ_G0018758	Atp6ap1l (MGP_CAROLIEiJ_G0018759) #31	Rps23 (MGP_CAROLIEiJ_G0018760) #32	Atg10 (MGP_CAROLIEiJ_G0018761) #33	Ssbp2 (MGP_CAROLIEiJ_G0018762) #34	Acot12 (MGP_CAROLIEiJ_G0018763) #35	Zcchc9 (MGP_CAROLIEiJ_G0018764) #36
Shrew mouse	MODERN SPECIES	2	Arsk (MGP_PahariEiJ_G0015813)	Skic3 (MGP_PahariEiJ_G0015814) #7	Mctp1 (MGP_PahariEiJ_G0015815) #9	Slf1 (MGP_PahariEiJ_G0015816) #10	MGP_PahariEiJ_G0015817 #11	Fam172a (MGP_PahariEiJ_G0015818) #12	Pou5f2 (MGP_PahariEiJ_G0015819) #13	Nr2f1 (MGP_PahariEiJ_G0015820) #14	Arrdc3 (MGP_PahariEiJ_G0015821) #15	Adgrv1 (MGP_PahariEiJ_G0015822) #16	Lysmd3 (MGP_PahariEiJ_G0015823) #17	Polr3g (MGP_PahariEiJ_G0015824) #18	Mblac2 (MGP_PahariEiJ_G0015825) #19	Cetn3 (MGP_PahariEiJ_G0015826) #20	Mef2c (MGP_PahariEiJ_G0015827) #21	Tmem161b (MGP_PahariEiJ_G0015828) #22	Ccnh (MGP_PahariEiJ_G0015829) #23	Rasa1 (MGP_PahariEiJ_G0015830) #24	Cox7c (MGP_PahariEiJ_G0015831) #25	Edil3 (MGP_PahariEiJ_G0015832) #26	Hapln1 (MGP_PahariEiJ_G0015833) #27	Vcan (MGP_PahariEiJ_G0015834) #28	Xrcc4 (MGP_PahariEiJ_G0015835) #29	Tmem167 (MGP_PahariEiJ_G0015836) #30	Vmn1r75 (MGP_PahariEiJ_G0015837)	Atp6ap1l (MGP_PahariEiJ_G0015838) #31	Rps23 (MGP_PahariEiJ_G0015839) #32	Atg10 (MGP_PahariEiJ_G0015840) #33	Ssbp2 (MGP_PahariEiJ_G0015841) #34	Acot12 (MGP_PahariEiJ_G0015842) #35	Zcchc9 (MGP_PahariEiJ_G0015843) #36
Rat	DUPLICATION
Rat	MODERN SPECIES	11	Rpl24-ps11 (ENSRNOG00000062253)	RGD1560883 (ENSRNOG00000045639) #11	Fam172a (ENSRNOG00000013844) #12	ENSRNOG00000066236	Nr2f1 (ENSRNOG00000014795) #14	Arrdc3 (ENSRNOG00000045649) #15	ENSRNOG00000069696	Adgrv1 (ENSRNOG00000016306) #16	Lysmd3 (ENSRNOG00000016298) #17	Polr3g (ENSRNOG00000016260) #18	Mblac2 (ENSRNOG00000016252) #19	Cetn3 (ENSRNOG00000050877) #20	LOC120100658 (ENSRNOG00000065778)	Mef2c (ENSRNOG00000033134) #21	AABR07007399.1 (ENSRNOG00000049010)	Tmem161b (ENSRNOG00000032414) #22	Ccnh (ENSRNOG00000031656) #23	Rasa1 (ENSRNOG00000029185) #24	Cox7c (ENSRNOG00000030237) #25	ENSRNOG00000064811	Edil3 (ENSRNOG00000033064) #26	ENSRNOG00000062828	Hapln1 (ENSRNOG00000032002) #27	Vcan (ENSRNOG00000029212) #28	Xrcc4 (ENSRNOG00000029966) #29	Tmem167a (ENSRNOG00000016686) #30	Atp6ap1l (ENSRNOG00000040201) #31	Rps23 (ENSRNOG00000016580) ##32	Atg10 (ENSRNOG00000016342) #33	Ssbp2 (ENSRNOG00000016213) #34	Acot12 (ENSRNOG00000061414) #35
Rat	DUPLICATION
Rat	MODERN SPECIES	5	AABR07015941.1 (ENSRNOG00000058474)	Eif6-ps1 (ENSRNOG00000058513)	Adcy1 (ENSRNOG00000059479)	Ccdc201 (ENSRNOG00000068472)	Igfbp1 (ENSRNOG00000058780)	Igfbp3 (ENSRNOG00000061910)	LOC686087 (ENSRNOG00000058316)	Tns3 (ENSRNOG00000025695)	LOC120096659 (ENSRNOG00000061615)	Pkd1l1 (ENSRNOG00000004865)	Hus1 (ENSRNOG00000005141)	Sun3 (ENSRNOG00000005105)	LOC688553 (ENSRNOG00000037632)	Upp1 (ENSRNOG00000004972)	Abca13 (ENSRNOG00000025645)	ENSRNOG00000067374 #22	LOC685655 (ENSRNOG00000069782) #22	LOC498414 (ENSRNOG00000030665)	Vwc2 (ENSRNOG00000049076)	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026)
Rat	MODERN SPECIES	5	Eif6-ps1 (ENSRNOG00000058513)	Adcy1 (ENSRNOG00000059479)	Ccdc201 (ENSRNOG00000068472)	Igfbp1 (ENSRNOG00000058780)	Igfbp3 (ENSRNOG00000061910)	LOC686087 (ENSRNOG00000058316)	Tns3 (ENSRNOG00000025695)	LOC120096659 (ENSRNOG00000061615)	Pkd1l1 (ENSRNOG00000004865)	Hus1 (ENSRNOG00000005141)	Sun3 (ENSRNOG00000005105)	LOC688553 (ENSRNOG00000037632)	Upp1 (ENSRNOG00000004972)	Abca13 (ENSRNOG00000025645)	ENSRNOG00000067374 #22	LOC685655 (ENSRNOG00000069782) #22	LOC498414 (ENSRNOG00000030665)	Vwc2 (ENSRNOG00000049076)	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026)	Plek (ENSRNOG00000005214)
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00940000164293 #13	ENSGT00530000063907.c #12	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102.c.a #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00940000164293 #13	ENSGT00530000063907.c #12	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01070000254013 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102.c.a #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Northern American deer mouse	MODERN SPECIES	6	Gpr150 (ENSPEMG00000000751)	Arsk (ENSPEMG00000014304)	Skic3 (ENSPEMG00000018623) #7	Fam81b (ENSPEMG00000020666) #8	Mctp1 (ENSPEMG00000014096) #9	Slf1 (ENSPEMG00000022525) #10	2210408I21Rik (ENSPEMG00000008563) #11	Fam172a (ENSPEMG00000009604) #12	Arrdc3 (ENSPEMG00000015553) #15	Adgrv1 (ENSPEMG00000016353) #16	ENSPEMG00000031428 #17	Polr3g (ENSPEMG00000027458) #18	Mblac2 (ENSPEMG00000030070) #19	Cetn3 (ENSPEMG00000016510) #20	Mef2c (ENSPEMG00000019761) #21	Tmem161b (ENSPEMG00000010319) #22	ENSPEMG00000025602	ENSPEMG00000027221	Ccnh (ENSPEMG00000022235) #23	Rasa1 (ENSPEMG00000021170) #24	Cox7c (ENSPEMG00000021189) #25	ENSPEMG00000022756	ENSPEMG00000030262	Gtf2h2 (ENSPEMG00000023230)	Ocln (ENSPEMG00000014068)	Marveld2 (ENSPEMG00000010720)	Rad17 (ENSPEMG00000008160)	ENSPEMG00000026043	Ccdc125 (ENSPEMG00000022475)	ENSPEMG00000023049	Cdk7 (ENSPEMG00000001737)
Prairie vole	MODERN SPECIES	6	2210408I21Rik (ENSMOCG00000000720) #11	Pou5f2 (ENSMOCG00000012326) #13	Fam172a (ENSMOCG00000003613) #12	Nr2f1 (ENSMOCG00000013379) #14	ENSMOCG00000011944	ENSMOCG00000020099	ENSMOCG00000015077	Arrdc3 (ENSMOCG00000006099) #15	ENSMOCG00000018170 #16	ENSMOCG00000013307 #16	Lysmd3 (ENSMOCG00000020333) #17	Polr3g (ENSMOCG00000014935) #18	Mblac2 (ENSMOCG00000011064) #19	Cetn3 (ENSMOCG00000009624) #20	Mef2c (ENSMOCG00000010324) #21	Tmem161b (ENSMOCG00000017125) #22	Ccnh (ENSMOCG00000005334) #23	Rasa1 (ENSMOCG00000020205) #24	Cox7c (ENSMOCG00000017709) #25	ENSMOCG00000016800	Edil3 (ENSMOCG00000001973) #26	Hapln1 (ENSMOCG00000018799) #27	ENSMOCG00000000187 #28	Xrcc4 (ENSMOCG00000015137) #29	Tmem167 (ENSMOCG00000013381) #30	ENSMOCG00000010468	ENSMOCG00000002610	Atp6ap1l (ENSMOCG00000020532) #31	ENSMOCG00000017478 #32	Atg10 (ENSMOCG00000014675) #33	ENSMOCG00000011514
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880.bc #16	ENSGT00940000154880.cc #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102.c.a #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Fam172a (ENSCGRG00001019984) #12	Pou5f2 (ENSCGRG00001019940) #13	Nr2f1 (ENSCGRG00001020383) #14	ENSCGRG00001024656	Arrdc3 (ENSCGRG00001024801) #15	ENSCGRG00001024885 #16	ENSCGRG00001020880	ENSCGRG00001017247 #16	Lysmd3 (ENSCGRG00001004064) #17	ENSCGRG00001004958	Mblac2 (ENSCGRG00001018393) #19	Cetn3 (ENSCGRG00001000920) #20	ENSCGRG00001003095	ENSCGRG00001007435	Mef2c (ENSCGRG00001006934) #21	Tmem161b (ENSCGRG00001023931) #22	Ccnh (ENSCGRG00001024363) #23	Rasa1 (ENSCGRG00001024641) #24	ENSCGRG00001007486	Cox7c (ENSCGRG00001016442) #25	ENSCGRG00001000944	ENSCGRG00001002366	Edil3 (ENSCGRG00001004897) #26	Hapln1 (ENSCGRG00001024344) #27	ENSCGRG00001014126 #28	Xrcc4 (ENSCGRG00001022340) #29	Tmem167 (ENSCGRG00001013866) #30	Atp6ap1l (ENSCGRG00001003786) #31	Rps23 (ENSCGRG00001005361) #32	Atg10 (ENSCGRG00001012356) #33	Ssbp2 (ENSCGRG00001010940) #34
Golden Hamster	MODERN SPECIES	620	Slf1 (ENSMAUG00000012672) #10	2210408I21Rik (ENSMAUG00000016282) #11	Pou5f2 (ENSMAUG00000021043) #13	Fam172a (ENSMAUG00000015076) #12	Nr2f1 (ENSMAUG00000008658) #14	Arrdc3 (ENSMAUG00000010410) #15	ENSMAUG00000010057	ENSMAUG00000008116 #16	ENSMAUG00000021704 #16	Lysmd3 (ENSMAUG00000001625) #17	ENSMAUG00000008528	Mblac2 (ENSMAUG00000019084) #19	Cetn3 (ENSMAUG00000021390) #20	Mef2c (ENSMAUG00000015018) #21	ENSMAUG00000015735	Tmem161b (ENSMAUG00000014575) #22	Ccnh (ENSMAUG00000017406) #23	Rasa1 (ENSMAUG00000011139) #24	Cox7c (ENSMAUG00000005056) #25	Edil3 (ENSMAUG00000009286) #26	ENSMAUG00000022083	Hapln1 (ENSMAUG00000008810) #27	ENSMAUG00000011125 #28	Xrcc4 (ENSMAUG00000006508) #29	Tmem167 (ENSMAUG00000000975) #30	ENSMAUG00000001668	Atp6ap1l (ENSMAUG00000001232) #31	ENSMAUG00000011243 #32	Atg10 (ENSMAUG00000011026) #33	Ssbp2 (ENSMAUG00000010660) #34	Acot12 (ENSMAUG00000019809) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1066															Mef2c (ENSNGAG00000000223) #21	Tmem161b (ENSNGAG00000010820) #22	ENSNGAG00000000735 #23	Rasa1 (ENSNGAG00000000049) #24	ENSNGAG00000001491 #25	ENSNGAG00000001102
Lesser Egyptian jerboa	MODERN SPECIES	45	Skic3 (ENSJJAG00000023939) #7	Mctp1 (ENSJJAG00000006669) #9	Slf1 (ENSJJAG00000020386) #10	ENSJJAG00000012582	Fam172a (ENSJJAG00000018331) #12	Nr2f1 (ENSJJAG00000014194) #14	Arrdc3 (ENSJJAG00000020311) #15	ENSJJAG00000012827 #16	ENSJJAG00000021631 #16	ENSJJAG00000009537 #16	Lysmd3 (ENSJJAG00000023942) #17	ENSJJAG00000001250	Mblac2 (ENSJJAG00000005655) #19	Cetn3 (ENSJJAG00000023827) #20	Mef2c (ENSJJAG00000013244) #21	Tmem161b (ENSJJAG00000024009) #22	ENSJJAG00000011002 #23	Rasa1 (ENSJJAG00000012863) #24	ENSJJAG00000003776 #25	ENSJJAG00000001446	ENSJJAG00000023444	ENSJJAG00000012743	Edil3 (ENSJJAG00000010032) #26	Hapln1 (ENSJJAG00000012871) #27	ENSJJAG00000017589 #28	Xrcc4 (ENSJJAG00000013678) #29	ENSJJAG00000019023 #30	Atp6ap1l (ENSJJAG00000015522) #31	Rps23 (ENSJJAG00000014219) #32	Atg10 (ENSJJAG00000013587) #33	Ssbp2 (ENSJJAG00000010960) #34
Kangaroo rat	MODERN SPECIES	347								ENSDORG00000028809	Arrdc3 (ENSDORG00000027054) #15	Adgrv1 (ENSDORG00000006226) #16	Lysmd3 (ENSDORG00000002417) #17	ENSDORG00000002414	Mblac2 (ENSDORG00000002413) #19	Cetn3 (ENSDORG00000007233) #20	Mef2c (ENSDORG00000026015) #21	Tmem161b (ENSDORG00000012482) #22	Ccnh (ENSDORG00000001438) #23	Rasa1 (ENSDORG00000001435) #24	ENSDORG00000004968	Edil3 (ENSDORG00000000456) #26	ENSDORG00000026224	Hapln1 (ENSDORG00000015896) #27	ENSDORG00000023517 #28	Xrcc4 (ENSDORG00000015883) #29	Tmem167 (ENSDORG00000026989) #30	Atp6ap1l (ENSDORG00000025510) #31	Rps23 (ENSDORG00000001813) #32	Atg10 (ENSDORG00000009893) #33	ENSDORG00000024485	Ssbp2 (ENSDORG00000001305) #34	Acot12 (ENSDORG00000001303) #35
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT01030000234916	ENSGT00550000074784.a.b ##32	ENSGT01100000263873	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Marmotini	ANCESTRAL SPECIES	23	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00940000164293 #13	ENSGT00530000063907.c #12	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880.hc #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	48														MEF2C (ENSMMMG00000008360) #21	ENSMMMG00000008337	ENSMMMG00000008322 #22	ENSMMMG00000008314 #22	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #23	RASA1 (ENSMMMG00000008245) #24	COX7C (ENSMMMG00000008226) #25	EDIL3 (ENSMMMG00000008149) #26	HAPLN1 (ENSMMMG00000008103) #27	ENSMMMG00000008014 #28	XRCC4 (ENSMMMG00000008004) #29	ENSMMMG00000007986 #30	ENSMMMG00000007968 #31	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953) #32	ATG10 (ENSMMMG00000007945) #33	SSBP2 (ENSMMMG00000007897) #34
Alpin marmot	MODERN SPECIES	48													MEF2C (ENSMMMG00000008360) #21	ENSMMMG00000008337	ENSMMMG00000008322 #22	ENSMMMG00000008314 #22	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #23	RASA1 (ENSMMMG00000008245) #24	COX7C (ENSMMMG00000008226) #25	EDIL3 (ENSMMMG00000008149) #26	HAPLN1 (ENSMMMG00000008103) #27	ENSMMMG00000008014 #28	XRCC4 (ENSMMMG00000008004) #29	ENSMMMG00000007986 #30	ENSMMMG00000007968 #31	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953) #32	ATG10 (ENSMMMG00000007945) #33	SSBP2 (ENSMMMG00000007897) #34	ACOT12 (ENSMMMG00000007863) #35
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	89	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880.hc #16	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.k #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00910000147325	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36
Arctic ground squirrel	MODERN SPECIES	407															ENSUPAG00010000519	ENSUPAG00010000475 #22	ENSUPAG00010000464	CCNH (ENSUPAG00010000452) #23	RASA1 (ENSUPAG00010000404) #24	COX7C (ENSUPAG00010000397) #25
Squirrel	MODERN SPECIES	69	NOSTRIN (ENSSTOG00000007406)	SPC25 (ENSSTOG00000007433)	G6PC2 (ENSSTOG00000007441)	ABCB11 (ENSSTOG00000007463)	DHRS9 (ENSSTOG00000009896)	LRP2 (ENSSTOG00000009904)	ENSSTOG00000019847	ARRDC3 (ENSSTOG00000020450) #15	ENSSTOG00000031315 #16	ENSSTOG00000034589 #16	LYSMD3 (ENSSTOG00000008678) #17	ENSSTOG00000008664	MBLAC2 (ENSSTOG00000023398) #19	CETN3 (ENSSTOG00000012271) #20	MEF2C (ENSSTOG00000001883) #21	ENSSTOG00000011141 #22	CCNH (ENSSTOG00000000659) #23	RASA1 (ENSSTOG00000000649) #24	COX7C (ENSSTOG00000034413) #25	ENSSTOG00000023841	ENSSTOG00000022943	EDIL3 (ENSSTOG00000003893) #26	HAPLN1 (ENSSTOG00000003875) #27	ENSSTOG00000026716 #28	XRCC4 (ENSSTOG00000023468) #29	ENSSTOG00000031235 #30	ENSSTOG00000005230 #31	ENSSTOG00000000824 ##32	ATG10 (ENSSTOG00000005212) #33	SSBP2 (ENSSTOG00000001418) #34	ACOT12 (ENSSTOG00000001413) #35
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.l #22
Squirrel	MODERN SPECIES	271			ENSSTOG00000019623	ENSSTOG00000004326	ENSSTOG00000023688	ENSSTOG00000027672	ENSSTOG00000032396	ENSSTOG00000022024	ENSSTOG00000028684	H1-5 (ENSSTOG00000006133)	ENSSTOG00000006125	ENSSTOG00000020367	ENSSTOG00000023857	ENSSTOG00000031850	ENSSTOG00000030706	ENSSTOG00000031831 #22	ENSSTOG00000034579	ENSSTOG00000030356	PRSS16 (ENSSTOG00000005984)	H2AC12 (ENSSTOG00000007236)	H2BC12 (ENSSTOG00000029261)	ENSSTOG00000023310	ENSSTOG00000026144	ENSSTOG00000028749	ENSSTOG00000030654	ENSSTOG00000033773	ENSSTOG00000023645	ENSSTOG00000029728	ENSSTOG00000033423	ENSSTOG00000030249	ABT1 (ENSSTOG00000024481)
Arctic ground squirrel	MODERN SPECIES	630			ENSUPAG00010011892	ENSUPAG00010011906	ENSUPAG00010011908	ENSUPAG00010011928	ENSUPAG00010011929	H1-5 (ENSUPAG00010011937)	ENSUPAG00010011938	ENSUPAG00010011944	ENSUPAG00010011950	ENSUPAG00010011953	ENSUPAG00010011956	ENSUPAG00010011960	ENSUPAG00010011966	ENSUPAG00010011971 #22	ENSUPAG00010011977	ENSUPAG00010011989	ENSUPAG00010011996	ENSUPAG00010012005	ENSUPAG00010012019	ENSUPAG00010012024	ENSUPAG00010012049	ENSUPAG00010012055	ENSUPAG00010012062	ENSUPAG00010012068	ENSUPAG00010012075	ENSUPAG00010012083	ENSUPAG00010012088	ENSUPAG00010012096	ENSUPAG00010012111
Eurasian red squirrel	MODERN SPECIES	15	KIAA0825 (ENSSVLG00005006731) #11	FAM172A (ENSSVLG00005006807) #12	ENSSVLG00005006919 #13	NR2F1 (ENSSVLG00005006944) #14	ARRDC3 (ENSSVLG00005007017) #15	ENSSVLG00005007056	ADGRV1 (ENSSVLG00005007157) #16	ENSSVLG00005007509	LYSMD3 (ENSSVLG00005007523) #17	ENSSVLG00005007556	ENSSVLG00005007572	MBLAC2 (ENSSVLG00005007608) #19	CETN3 (ENSSVLG00005007638) #20	ENSSVLG00005007697	MEF2C (ENSSVLG00005007790) #21	TMEM161B (ENSSVLG00005007974) #22	CCNH (ENSSVLG00005008091) #23	RASA1 (ENSSVLG00005008223) #24	ENSSVLG00005008592 #25	EDIL3 (ENSSVLG00005008647) #26	HAPLN1 (ENSSVLG00005008777) #27	VCAN (ENSSVLG00005008932) #28	XRCC4 (ENSSVLG00005009326) #29	ENSSVLG00005009361 #30	ENSSVLG00005009400 #31	ENSSVLG00005009458 ##32	ATG10 (ENSSVLG00005009563) #33	SSBP2 (ENSSVLG00005009766) #34	ACOT12 (ENSSVLG00005010445) #35	ZCCHC9 (ENSSVLG00005010577) #36	CKMT2 (ENSSVLG00005010620) #37
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880.gc #16	ENSGT00940000158711 #17	ENSGT01100000264660.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT01100000263873	ENSGT00550000074784.b ##32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880.gc #16	ENSGT00940000158711 #17	ENSGT01100000264660.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT01100000263873	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000164293 #13	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880.gc #16	ENSGT00940000158711 #17	ENSGT01100000264660.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Long-tailed chinchilla	MODERN SPECIES	125	MCTP1 (ENSCLAG00000004952) #9	SLF1 (ENSCLAG00000005160) #10	KIAA0825 (ENSCLAG00000005311) #11	FAM172A (ENSCLAG00000005472) #12	NR2F1 (ENSCLAG00000005596) #14	ARRDC3 (ENSCLAG00000005661) #15	ENSCLAG00000005769 #16	ENSCLAG00000005851 #16	ENSCLAG00000006022 #16	LYSMD3 (ENSCLAG00000006052) #17	ENSCLAG00000006118	MBLAC2 (ENSCLAG00000006185) #19	CETN3 (ENSCLAG00000006215) #20	MEF2C (ENSCLAG00000003422) #21	ENSCLAG00000003728	TMEM161B (ENSCLAG00000003850) #22	CCNH (ENSCLAG00000004012) #23	RASA1 (ENSCLAG00000004110) #24	ENSCLAG00000004179 #25	EDIL3 (ENSCLAG00000004305) #26	HAPLN1 (ENSCLAG00000004483) #27	ENSCLAG00000004575 #28	XRCC4 (ENSCLAG00000004677) #29	TMEM167A (ENSCLAG00000004734) #30	Rps23 (ENSCLAG00000004798) #32	ENSCLAG00000004838	ATG10 (ENSCLAG00000004893) #33	SSBP2 (ENSCLAG00000004986) #34	ACOT12 (ENSCLAG00000005180) #35	ZCCHC9 (ENSCLAG00000005289) #36	CKMT2 (ENSCLAG00000005343) #37
Degu	MODERN SPECIES	170																TMEM161B (ENSODEG00000005530) #22	CCNH (ENSODEG00000005505) #23	RASA1 (ENSODEG00000005418) #24	ENSODEG00000019183	ENSODEG00000005383 #25	ENSODEG00000005376	ENSODEG00000005359	EDIL3 (ENSODEG00000005260) #26	HAPLN1 (ENSODEG00000005201) #27	ENSODEG00000005176 #28	ENSODEG00000005159	XRCC4 (ENSODEG00000005147) #29	ENSODEG00000005125 #30	ENSODEG00000005103 #31	RPS23 (ENSODEG00000005092) #32	ATG10 (ENSODEG00000005078) #33
Guinea pig	MODERN SPECIES	1	FAM81B (ENSCPOG00000005332) #8	MCTP1 (ENSCPOG00000005018) #9	SLF1 (ENSCPOG00000005012) #10	KIAA0825 (ENSCPOG00000002594) #11	FAM172A (ENSCPOG00000013935) #12	NR2F1 (ENSCPOG00000005883) #14	ARRDC3 (ENSCPOG00000002749) #15	ENSCPOG00000030916 #16	ENSCPOG00000004008 #16	ENSCPOG00000035017 #16	LYSMD3 (ENSCPOG00000031696) #17	ENSCPOG00000036643	MBLAC2 (ENSCPOG00000036054) #19	CETN3 (ENSCPOG00000023805) #20	MEF2C (ENSCPOG00000035485) #21	TMEM161B (ENSCPOG00000003613) #22	CCNH (ENSCPOG00000007894) #23	RASA1 (ENSCPOG00000007883) #24	COX7C (ENSCPOG00000037322) ##25	EDIL3 (ENSCPOG00000006986) #26	HAPLN1 (ENSCPOG00000037148) #27	ENSCPOG00000039167 #28	XRCC4 (ENSCPOG00000012258) #29	TMEM167A (ENSCPOG00000026186) #30	ENSCPOG00000011131 #31	RPS23 (ENSCPOG00000037620) #32	ENSCPOG00000022705	ATG10 (ENSCPOG00000032098) #33	SSBP2 (ENSCPOG00000001712) #34	ACOT12 (ENSCPOG00000009718) #35	ZCCHC9 (ENSCPOG00000003947) #36
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000049662	ENSHGLG00000009574 #15	ENSHGLG00000008871 #16	ENSHGLG00000043201	ENSHGLG00000048068	ENSHGLG00000042570 #16	ENSHGLG00000038073 #16	ENSHGLG00000036506	LYSMD3 (ENSHGLG00000039807) #17	ENSHGLG00000039707	MBLAC2 (ENSHGLG00000046616) #19	CETN3 (ENSHGLG00000036397) #20	MEF2C (ENSHGLG00000008715) #21	ENSHGLG00000042125	ENSHGLG00000002953	TMEM161B (ENSHGLG00000016157) #22	ENSHGLG00000012753	CCNH (ENSHGLG00000007779) #23	RASA1 (ENSHGLG00000005734) #24	ENSHGLG00000033884	COX7C (ENSHGLG00000032953) #25	EDIL3 (ENSHGLG00000013218) #26	HAPLN1 (ENSHGLG00000034114) #27	VCAN (ENSHGLG00000010244) #28	XRCC4 (ENSHGLG00000032875) #29	TMEM167A (ENSHGLG00000036731) #30	ENSHGLG00000036000 #31	ENSHGLG00000008165 ##32	ENSHGLG00000007844 #33
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00940000158982	ENSGT00390000016407 #7	ENSGT00390000004985.a #8	ENSGT00940000156031 #9	ENSGT00940000158953 #10	ENSGT00610000086112 #11	ENSGT00530000063907.c #12	ENSGT00940000157876 #14	ENSGT00940000155411.c #15	ENSGT00940000154880 #16	ENSGT00940000158711 #17	ENSGT01100000265337	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #26	ENSGT00940000159267 #27	ENSGT00940000156102 #28	ENSGT00390000017079 #29	ENSGT00940000155186 #30	ENSGT00940000158156 #31	ENSGT00550000074784.a.a #32	ENSGT00390000000924 #33	ENSGT00950000183049.A #34	ENSGT00940000160328 #35	ENSGT00950000183041.C #36	ENSGT00950000182772.B.a.a #37
Rabbit	MODERN SPECIES	2	MCTP1 (ENSOCUG00000038402) #9	SLF1 (ENSOCUG00000004299) #10	KIAA0825 (ENSOCUG00000001921) #11	FAM172A (ENSOCUG00000007299) #12	ENSOCUG00000036738	ENSOCUG00000034601	ENSOCUG00000038895	ENSOCUG00000022494	ARRDC3 (ENSOCUG00000004378) #15	ADGRV1 (ENSOCUG00000017411) #16	LYSMD3 (ENSOCUG00000023323) #17	ENSOCUG00000010624	MBLAC2 (ENSOCUG00000026716) #19	CETN3 (ENSOCUG00000005711) #20	MEF2C (ENSOCUG00000029354) #21	TMEM161B (ENSOCUG00000005147) #22	ENSOCUG00000033164	ENSOCUG00000035816	CCNH (ENSOCUG00000004659) #23	RASA1 (ENSOCUG00000004646) #24	ENSOCUG00000039253 ##25	ENSOCUG00000006715	ENSOCUG00000002319	ENSOCUG00000029582	ENSOCUG00000029665	EDIL3 (ENSOCUG00000017338) #26	HAPLN1 (ENSOCUG00000002630) #27	VCAN (ENSOCUG00000002613) #28	XRCC4 (ENSOCUG00000015052) #29	ENSOCUG00000009326 #30	ENSOCUG00000014110 #31
Pika	MODERN SPECIES	8520																TMEM161B (ENSOPRG00000015403) #22
Tree shrew	MODERN SPECIES	3198																TMEM161B (ENSTBEG00000010286) #22