Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00940000155186 #34	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00960000186730	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Mammalia	ANCESTRAL SPECIES	10	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00960000186730	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Theria	ANCESTRAL SPECIES	11	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00960000186730	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT00960000186730	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Primates	ANCESTRAL SPECIES	8	ENSGT00940000165033	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000262760	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00910000147249 #31	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Catarrhini	DUPLICATION
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00390000007473.h	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.n #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Hominidae	ANCESTRAL SPECIES	7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00390000007473.h	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.n #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000153052.c.b.a.a.a.a.b.b.a.a.a #11	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00390000007473.h	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.n.a.a #25	ENSGT00390000018509.a.n.b #27	ENSGT00390000018086.n.b ##25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000153052.c.b.a.a.a.a.b.b.a.a.a #11	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.n.a.a #25	ENSGT00390000018509.a.n.b #27	ENSGT00390000018086.n.b ##25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Pan	ANCESTRAL SPECIES	21	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000153052.c.b.a.a.a.a.b.b.a.a.a #11	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000154276.hb.a.e.b.b #16	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.n.a.a #25	ENSGT00390000018509.a.n.b #27	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183087.A.a.b.b.g.f	ENSGT00950000183049.A
Chimpanzee	MODERN SPECIES	18	SLF1 (ENSPTRG00000017079) #7	ENSPTRG00000051147 #8	KIAA0825 (ENSPTRG00000023210) #9	FAM172A (ENSPTRG00000017074) #10	ENSPTRG00000046378 #11	NR2F1 (ENSPTRG00000017073) #12	ARRDC3 (ENSPTRG00000017072) #13	ENSPTRG00000052572 #14	ADGRV1 (ENSPTRG00000017070) #15	ENSPTRG00000052859 #16	LYSMD3 (ENSPTRG00000017069) #17	POLR3G (ENSPTRG00000017068) #18	MBLAC2 (ENSPTRG00000017067) #19	CETN3 (ENSPTRG00000017066) #20	MEF2C (ENSPTRG00000024214) #21	TMEM161B (ENSPTRG00000017064) #22	CCNH (ENSPTRG00000017063) #23	RASA1 (ENSPTRG00000017062) #24	COX7C (ENSPTRG00000048661) #25	ENSPTRG00000001027 #26	ENSPTRG00000046359 #27	EDIL3 (ENSPTRG00000017057) #28	HAPLN1 (ENSPTRG00000017056) #29	VCAN (ENSPTRG00000017055) #30	ENSPTRG00000045929 #31	XRCC4 (ENSPTRG00000017054) #32	ENSPTRG00000044846 #33	TMEM167A (ENSPTRG00000044250) #34	ATP6AP1L (ENSPTRG00000050446) #35	RPS23 (ENSPTRG00000017052) #36	ATG10 (ENSPTRG00000017050) #37
Bonobo	MODERN SPECIES	18	ENSPPAG00000043061 #8	KIAA0825 (ENSPPAG00000029168) #9	FAM172A (ENSPPAG00000030542) #10	POU5F2 (ENSPPAG00000014596)	ENSPPAG00000042574 ##11	NR2F1 (ENSPPAG00000029692) #12	ARRDC3 (ENSPPAG00000034772) #13	ENSPPAG00000024964 #14	ADGRV1 (ENSPPAG00000034954) #15	ENSPPAG00000035937 #16	LYSMD3 (ENSPPAG00000036100) #17	POLR3G (ENSPPAG00000038891) #18	MBLAC2 (ENSPPAG00000030673) #19	CETN3 (ENSPPAG00000042285) #20	MEF2C (ENSPPAG00000039315) #21	TMEM161B (ENSPPAG00000034458) #22	CCNH (ENSPPAG00000034768) #23	RASA1 (ENSPPAG00000031210) #24	ENSPPAG00000033965 #25	ENSPPAG00000028873 #27	EDIL3 (ENSPPAG00000034784) #28	HAPLN1 (ENSPPAG00000037621) #29	VCAN (ENSPPAG00000026050) #30	ENSPPAG00000015511 #31	XRCC4 (ENSPPAG00000040322) #32	TMEM167A (ENSPPAG00000043917) #34	ENSPPAG00000038667 #35	RPS23 (ENSPPAG00000043006) #36	ATG10 (ENSPPAG00000033287) #37	ENSPPAG00000004621	ENSPPAG00000039772
Human	MODERN SPECIES	17	SKIC3 (ENSG00000198677)	FAM81B (ENSG00000153347)	MCTP1 (ENSG00000175471)	SLF1 (ENSG00000133302) #7	KIAA0825 (ENSG00000185261) #9	POU5F2 (ENSG00000248483)	FAM172A (ENSG00000113391) #10	NR2F1 (ENSG00000175745) #12	ARRDC3 (ENSG00000113369) #13	ADGRV1 (ENSG00000164199) #15	LYSMD3 (ENSG00000176018) #17	POLR3G (ENSG00000113356) #18	MBLAC2 (ENSG00000176055) #19	CETN3 (ENSG00000153140) #20	MEF2C (ENSG00000081189) #21	TMEM161B (ENSG00000164180) #22	CCNH (ENSG00000134480) #23	RASA1 (ENSG00000145715) #24	COX7C (ENSG00000127184) ##25	EDIL3 (ENSG00000164176) #28	HAPLN1 (ENSG00000145681) #29	VCAN (ENSG00000038427) #30	XRCC4 (ENSG00000152422) #32	TMEM167A (ENSG00000174695) #34	RPS23 (ENSG00000186468) #36	ATG10 (ENSG00000152348) #37	SSBP2 (ENSG00000145687)	ACOT12 (ENSG00000172497)	ZCCHC9 (ENSG00000131732)	CKMT2 (ENSG00000131730)	RASGRF2 (ENSG00000113319)
Gorilla	MODERN SPECIES	18	KIAA0825 (ENSGGOG00000003363) #9	ENSGGOG00000027925 #11	FAM172A (ENSGGOG00000010296) #10	ENSGGOG00000011470 #12	ENSGGOG00000024153	ENSGGOG00000043080	ARRDC3 (ENSGGOG00000004294) #13	ENSGGOG00000025546 #14	ENSGGOG00000043133	ADGRV1 (ENSGGOG00000010968) #15	LYSMD3 (ENSGGOG00000043192) #17	POLR3G (ENSGGOG00000000266) #18	MBLAC2 (ENSGGOG00000002845) #19	CETN3 (ENSGGOG00000009598) #20	MEF2C (ENSGGOG00000002856) #21	TMEM161B (ENSGGOG00000005684) #22	CCNH (ENSGGOG00000005172) #23	RASA1 (ENSGGOG00000001591) #24	ENSGGOG00000036539	COX7C (ENSGGOG00000012393) #25	ENSGGOG00000028128 #27	EDIL3 (ENSGGOG00000025465) #28	ENSGGOG00000043369	HAPLN1 (ENSGGOG00000028491) #29	VCAN (ENSGGOG00000016068) #30	ENSGGOG00000040035 #33	XRCC4 (ENSGGOG00000005197) #32	TMEM167A (ENSGGOG00000042218) #34	ENSGGOG00000013925 #35	RPS23 (ENSGGOG00000025014) #36	ENSGGOG00000026751
Orangutan	MODERN SPECIES	18	FAM81B (ENSPPYG00000015637)	MCTP1 (ENSPPYG00000015636)	SLF1 (ENSPPYG00000015634) #7	KIAA0825 (ENSPPYG00000015633) #9	FAM172A (ENSPPYG00000015631) #10	NR2F1 (ENSPPYG00000015629) #12	ENSPPYG00000031067	ARRDC3 (ENSPPYG00000015628) #13	ENSPPYG00000015627 #14	ADGRV1 (ENSPPYG00000015626) #15	ENSPPYG00000031868 #17	POLR3G (ENSPPYG00000015624) #18	MBLAC2 (ENSPPYG00000033594) #19	CETN3 (ENSPPYG00000015622) #20	MEF2C (ENSPPYG00000033322) #21	TMEM161B (ENSPPYG00000015620) #22	CCNH (ENSPPYG00000015619) #23	RASA1 (ENSPPYG00000015618) #24	ENSPPYG00000030583	COX7C (ENSPPYG00000015616) ##25	EDIL3 (ENSPPYG00000015615) #28	HAPLN1 (ENSPPYG00000015614) #29	VCAN (ENSPPYG00000015613) #30	XRCC4 (ENSPPYG00000015612) #32	TMEM167A (ENSPPYG00000031892) #34	ENSPPYG00000015609 #35	RPS23 (ENSPPYG00000030974) #36	ATG10 (ENSPPYG00000015607) #37	SSBP2 (ENSPPYG00000015606)	ENSPPYG00000015605	ZCCHC9 (ENSPPYG00000015604)
Gibbon	MODERN SPECIES	11	SLF1 (ENSNLEG00000013948) #7	KIAA0825 (ENSNLEG00000013928) #9	FAM172A (ENSNLEG00000013903) #10	NR2F1 (ENSNLEG00000013901) #12	ENSNLEG00000033731	ARRDC3 (ENSNLEG00000013887) #13	ENSNLEG00000033643 #14	ENSNLEG00000034584	ADGRV1 (ENSNLEG00000013776) #15	LYSMD3 (ENSNLEG00000013761) #17	ENSNLEG00000032117	POLR3G (ENSNLEG00000034746) #18	MBLAC2 (ENSNLEG00000013746) #19	CETN3 (ENSNLEG00000027875) #20	MEF2C (ENSNLEG00000013673) #21	TMEM161B (ENSNLEG00000013645) #22	CCNH (ENSNLEG00000013604) #23	RASA1 (ENSNLEG00000013467) #24	ENSNLEG00000033043	ENSNLEG00000027612 ##25	ENSNLEG00000013459 #27	ENSNLEG00000032525	EDIL3 (ENSNLEG00000013418) #28	ENSNLEG00000035592	HAPLN1 (ENSNLEG00000013393) #29	VCAN (ENSNLEG00000013300) #30	ENSNLEG00000032670 #33	XRCC4 (ENSNLEG00000013239) #32	TMEM167A (ENSNLEG00000013231) #34	ENSNLEG00000027406	ENSNLEG00000013214 #35
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00530000063169.a.b	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b.a #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00530000063169.a.b	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b.a #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00530000063169.a.b	ENSGT00910000147795	ENSGT00950000183105.B.b	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b.a #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37
Olive baboon	MODERN SPECIES	15	NR2F1 (ENSPANG00000007937) #12	ENSPANG00000038763	ENSPANG00000014974	ARRDC3 (ENSPANG00000016059) #13	ENSPANG00000031238 #14	ADGRV1 (ENSPANG00000026385) #15	LYSMD3 (ENSPANG00000008951) #17	POLR3G (ENSPANG00000006211) #18	MBLAC2 (ENSPANG00000001530) #19	CETN3 (ENSPANG00000010181) #20	ENSPANG00000046555	ENSPANG00000044443	MEF2C (ENSPANG00000010944) #21	ENSPANG00000037642	ENSPANG00000049972	TMEM161B (ENSPANG00000004600) #22	CCNH (ENSPANG00000023952) #23	RASA1 (ENSPANG00000017878) #24	ENSPANG00000040921 #25	ENSPANG00000051054	ENSPANG00000047004	ENSPANG00000038247	ENSPANG00000046816	EDIL3 (ENSPANG00000002875) #28	HAPLN1 (ENSPANG00000043592) #29	VCAN (ENSPANG00000000300) #30	XRCC4 (ENSPANG00000003281) #32	TMEM167A (ENSPANG00000049105) #34	ENSPANG00000030703 #35	RPS23 (ENSPANG00000013597) #36	ATG10 (ENSPANG00000003860) #37
Cercopithecinae_d	ANCESTRAL SPECIES	48	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00530000063169.a.b	ENSGT00910000147795	ENSGT00950000183105.B.b	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b.a #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Sooty mangabey	MODERN SPECIES	296	SLF1 (ENSCATG00000045157) #7	KIAA0825 (ENSCATG00000040813) #9	FAM172A (ENSCATG00000006158) #10	NR2F1 (ENSCATG00000045231) #12	ENSCATG00000044371	ENSCATG00000033426	ENSCATG00000037605	ARRDC3 (ENSCATG00000011987) #13	ENSCATG00000013474 #14	ADGRV1 (ENSCATG00000042370) #15	LYSMD3 (ENSCATG00000028915) #17	ENSCATG00000044864	MBLAC2 (ENSCATG00000019268) #19	CETN3 (ENSCATG00000031135) #20	MEF2C (ENSCATG00000041293) #21	TMEM161B (ENSCATG00000042980) #22	CCNH (ENSCATG00000041554) #23	RASA1 (ENSCATG00000014585) #24	ENSCATG00000034062 #25	ENSCATG00000035380	EDIL3 (ENSCATG00000036627) #28	HAPLN1 (ENSCATG00000037967) #29	VCAN (ENSCATG00000033955) #30	ENSCATG00000045056 #31	XRCC4 (ENSCATG00000031467) #32	TMEM167A (ENSCATG00000038227) #34	ENSCATG00000040706 #35	ENSCATG00000041062 ##36	ATG10 (ENSCATG00000032132) #37	SSBP2 (ENSCATG00000042579)	ACOT12 (ENSCATG00000041450)
Drill	MODERN SPECIES	700								ARRDC3 (ENSMLEG00000030625) #13	ENSMLEG00000001403 #14	ADGRV1 (ENSMLEG00000029683) #15	LYSMD3 (ENSMLEG00000040282) #17	POLR3G (ENSMLEG00000028512) #18	MBLAC2 (ENSMLEG00000036408) #19	CETN3 (ENSMLEG00000023585) #20	MEF2C (ENSMLEG00000034952) #21	TMEM161B (ENSMLEG00000034005) #22	CCNH (ENSMLEG00000031098) #23	RASA1 (ENSMLEG00000034154) #24
Macaca	ANCESTRAL SPECIES	7	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b.a #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00910000147249 #31	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000166143.A.a.b.b.b.b.a.b.a.a	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00940000170471.I.b	ENSGT00390000000672.a.b.e.a #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.o.b.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00390000004856.w.a.b	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Rhesus	MODERN SPECIES	16	ENSMMUG00000029933	ENSMMUG00000054299	ARRDC3 (ENSMMUG00000003569) #13	ENSMMUG00000055066	ENSMMUG00000052301 #14	ENSMMUG00000053152	ENSMMUG00000064649	ADGRV1 (ENSMMUG00000018976) #15	LYSMD3 (ENSMMUG00000018974) #17	POLR3G (ENSMMUG00000018972) #18	MBLAC2 (ENSMMUG00000056954) #19	CETN3 (ENSMMUG00000020180) #20	MEF2C (ENSMMUG00000019836) #21	ENSMMUG00000053232	ENSMMUG00000062486	TMEM161B (ENSMMUG00000009319) #22	CCNH (ENSMMUG00000003248) #23	RASA1 (ENSMMUG00000003245) #24	COX7C (ENSMMUG00000040409) #25	ENSMMUG00000063160	ENSMMUG00000039961	ENSMMUG00000051689	EDIL3 (ENSMMUG00000007661) #28	HAPLN1 (ENSMMUG00000061282) #29	VCAN (ENSMMUG00000011513) #30	XRCC4 (ENSMMUG00000064265) #32	TMEM167A (ENSMMUG00000046560) #34	ATP6AP1L (ENSMMUG00000029954) #35	RPS23 (ENSMMUG00000003578) #36	ATG10 (ENSMMUG00000003577) #37	SSBP2 (ENSMMUG00000017583)
Crab-eating macaque	MODERN SPECIES	16	ENSMFAG00000062433	KIAA0825 (ENSMFAG00000037289) #9	FAM172A (ENSMFAG00000001171) #10	NR2F1 (ENSMFAG00000042083) #12	ENSMFAG00000032506	ARRDC3 (ENSMFAG00000031762) #13	ENSMFAG00000049579	ADGRV1 (ENSMFAG00000032687) #15	LYSMD3 (ENSMFAG00000034572) #17	POLR3G (ENSMFAG00000057504) #18	MBLAC2 (ENSMFAG00000001314) #19	CETN3 (ENSMFAG00000036901) #20	ENSMFAG00000060678	MEF2C (ENSMFAG00000044479) #21	ENSMFAG00000058851	TMEM161B (ENSMFAG00000043023) #22	CCNH (ENSMFAG00000008721) #23	RASA1 (ENSMFAG00000037698) #24	COX7C (ENSMFAG00000035190) #25	ENSMFAG00000063591	ENSMFAG00000048019	ENSMFAG00000059027	EDIL3 (ENSMFAG00000039875) #28	HAPLN1 (ENSMFAG00000047220) #29	VCAN (ENSMFAG00000032675) #30	XRCC4 (ENSMFAG00000013259) #32	TMEM167A (ENSMFAG00000064295) #34	ENSMFAG00000030373	ENSMFAG00000045507 #35	RPS23 (ENSMFAG00000046092) #36	ATG10 (ENSMFAG00000031807) #37
Pig-tailed macaque	MODERN SPECIES	184	MCTP1 (ENSMNEG00000035465)	SLF1 (ENSMNEG00000043014) #7	KIAA0825 (ENSMNEG00000030601) #9	FAM172A (ENSMNEG00000039938) #10	NR2F1 (ENSMNEG00000026061) #12	ENSMNEG00000037005	ENSMNEG00000029794	ARRDC3 (ENSMNEG00000033108) #13	ENSMNEG00000021838 #14	ADGRV1 (ENSMNEG00000035423) #15	LYSMD3 (ENSMNEG00000041200) #17	POLR3G (ENSMNEG00000029715) #18	MBLAC2 (ENSMNEG00000040410) #19	CETN3 (ENSMNEG00000034706) #20	MEF2C (ENSMNEG00000035741) #21	TMEM161B (ENSMNEG00000044796) #22
Rhinopithecus	ANCESTRAL SPECIES	558									ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000148301	ENSGT00910000147866	ENSGT00390000000672.a.b.e.a #22
Golden snub-nosed monkey	MODERN SPECIES	3197													MEF2C (ENSRROG00000041017) #21	ENSRROG00000035001	ENSRROG00000021349	TMEM161B (ENSRROG00000042246) #22
Black snub-nosed monkey	MODERN SPECIES	1013									LYSMD3 (ENSRBIG00000029425) #17	POLR3G (ENSRBIG00000040918) #18	MBLAC2 (ENSRBIG00000033565) #19	ENSRBIG00000042602	ENSRBIG00000034437	MEF2C (ENSRBIG00000040542) #21	ENSRBIG00000040827	TMEM161B (ENSRBIG00000037063) #22	CCBE1 (ENSRBIG00000031340)	LMAN1 (ENSRBIG00000044275)	CPLX4 (ENSRBIG00000039168)	RAX (ENSRBIG00000031446)	GRP (ENSRBIG00000031803)	ENSRBIG00000031651	SEC11C (ENSRBIG00000025516)	ZNF532 (ENSRBIG00000039248)	MALT1 (ENSRBIG00000032078)	ALPK2 (ENSRBIG00000041653)	NEDD4L (ENSRBIG00000037432)	ENSRBIG00000043735	ATP8B1 (ENSRBIG00000035681)	NARS1 (ENSRBIG00000028813)	FECH (ENSRBIG00000038117)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	615																ENSCATG00000002144 ##22
Sooty mangabey	MODERN SPECIES	588																ENSCATG00000002945 ##22
Drill	MODERN SPECIES	471																ENSMLEG00000028056 ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.e.b ##22
Gorilla	MODERN SPECIES	1	ARHGAP12 (ENSGGOG00000012753)	KIF5B (ENSGGOG00000013417)	ENSGGOG00000040767	ENSGGOG00000043841	EPC1 (ENSGGOG00000008088)	ENSGGOG00000022296	CCDC7 (ENSGGOG00000004506)	ITGB1 (ENSGGOG00000006118)	NRP1 (ENSGGOG00000001496)	PARD3 (ENSGGOG00000005482)	CUL2 (ENSGGOG00000003348)	CREM (ENSGGOG00000003999)	CCNY (ENSGGOG00000004406)	GJD4 (ENSGGOG00000005857)	ANKRD30A (ENSGGOG00000016263)	ENSGGOG00000036120 ##22	ENSGGOG00000027469	ZNF248 (ENSGGOG00000016885)	ZNF25 (ENSGGOG00000023307)	ZNF33A (ENSGGOG00000014383)	ZNF37A (ENSGGOG00000006145)	ENSGGOG00000040734	ENSGGOG00000022600	ENSGGOG00000016162	ZNF33B (ENSGGOG00000012244)	ENSGGOG00000028401	ENSGGOG00000040776	RET (ENSGGOG00000003576)	CSGALNACT2 (ENSGGOG00000007891)	RASGEF1A (ENSGGOG00000004902)	FXYD4 (ENSGGOG00000010870)
Gibbon	MODERN SPECIES	8	ENSNLEG00000031664	NPFFR1 (ENSNLEG00000016116)	PPA1 (ENSNLEG00000016098)	ENSNLEG00000028866	ENSNLEG00000035168	ENSNLEG00000033145	ENSNLEG00000016088	ENSNLEG00000016058	ENSNLEG00000034853	ENSNLEG00000016053	ZFAND4 (ENSNLEG00000016016)	MARCHF8 (ENSNLEG00000015999)	ALOX5 (ENSNLEG00000015960)	ENSNLEG00000026876	ENSNLEG00000036104	ENSNLEG00000019103 ##22	ZNF22 (ENSNLEG00000031260)	ENSNLEG00000033659	RASSF4 (ENSNLEG00000015929)	ENSNLEG00000032751	TMEM72 (ENSNLEG00000032425)	ENSNLEG00000030653	ENSNLEG00000033185	ENSNLEG00000033245	ENSNLEG00000015913	ZNF32 (ENSNLEG00000035247)	ZNF485 (ENSNLEG00000015899)	ENSNLEG00000034314	ZNF239 (ENSNLEG00000015896)	ENSNLEG00000029427	HNRNPF (ENSNLEG00000019098)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f ##22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f ##22
Macaca	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f ##22
Pig-tailed macaque	MODERN SPECIES	397																ENSMNEG00000000207 ##22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.f ##22
Crab-eating macaque	MODERN SPECIES	161																ENSMFAG00000005470 ##22	ENSMFAG00000049431
Rhesus	MODERN SPECIES	19	CXCL12 (ENSMMUG00000012181)	ENSMMUG00000053760	ZNF32 (ENSMMUG00000062844)	ZNF485 (ENSMMUG00000061713)	ZNF239 (ENSMMUG00000054392)	ENSMMUG00000059075	ZNF487 (ENSMMUG00000064260)	ENSMMUG00000060451	ENSMMUG00000050447	HNRNPF (ENSMMUG00000020982)	FXYD4 (ENSMMUG00000050889)	ENSMMUG00000044393	RASGEF1A (ENSMMUG00000015406)	CSGALNACT2 (ENSMMUG00000015405)	RET (ENSMMUG00000015400)	ENSMMUG00000039818 ##22	ENSMMUG00000059272	ENSMMUG00000051698	BMS1 (ENSMMUG00000007426)	ENSMMUG00000055704	ENSMMUG00000040267	ANKRD30BL (ENSMMUG00000004397)	ENSMMUG00000047658	ENSMMUG00000005404	ZNF33B (ENSMMUG00000010528)	ENSMMUG00000063444	ENSMMUG00000002711	ENSMMUG00000064104	ENSMMUG00000053996	ZNF248 (ENSMMUG00000010741)	ENSMMUG00000063852
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00390000003924.r	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.q.b #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00910000147249 #31	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Mas night monkey	MODERN SPECIES	992	KIAA0825 (ENSANAG00000025687) #9	FAM172A (ENSANAG00000035869) #10	ENSANAG00000035483	NR2F1 (ENSANAG00000031992) #12	ENSANAG00000024012	ENSANAG00000033833	ENSANAG00000030581	ARRDC3 (ENSANAG00000025287) #13	ADGRV1 (ENSANAG00000015354) #15	LYSMD3 (ENSANAG00000026299) #17	POLR3G (ENSANAG00000005030) #18	MBLAC2 (ENSANAG00000025030) #19	CETN3 (ENSANAG00000023255) #20	MEF2C (ENSANAG00000037478) #21	ENSANAG00000019321	TMEM161B (ENSANAG00000027071) #22	CCNH (ENSANAG00000037104) #23	RASA1 (ENSANAG00000029874) #24	COX7C (ENSANAG00000030476) #25	EDIL3 (ENSANAG00000024200) #28	HAPLN1 (ENSANAG00000036107) #29	VCAN (ENSANAG00000027105) #30	XRCC4 (ENSANAG00000032084) #32	TMEM167A (ENSANAG00000036200) #34	ENSANAG00000035867	ENSANAG00000027961	ENSANAG00000033330 #35	RPS23 (ENSANAG00000019218) #36	ATG10 (ENSANAG00000029651) #37	SSBP2 (ENSANAG00000021537)	ACOT12 (ENSANAG00000032859)
Cebidae	ANCESTRAL SPECIES	6	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00390000003924.r	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.q.b #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00910000147249 #31	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C.c.a
Marmoset	MODERN SPECIES	11	ENSCJAG00000086719	KIAA0825 (ENSCJAG00000010418) #9	FAM172A (ENSCJAG00000010444) #10	NR2F1 (ENSCJAG00000010492) #12	ENSCJAG00000072601	ENSCJAG00000085926	ENSCJAG00000078673	ARRDC3 (ENSCJAG00000010525) #13	ADGRV1 (ENSCJAG00000010578) #15	LYSMD3 (ENSCJAG00000066019) #17	ENSCJAG00000010747	MBLAC2 (ENSCJAG00000039786) #19	CETN3 (ENSCJAG00000010761) #20	MEF2C (ENSCJAG00000010799) #21	ENSCJAG00000084377	TMEM161B (ENSCJAG00000041282) #22	CCNH (ENSCJAG00000010902) #23	RASA1 (ENSCJAG00000010941) #24	ENSCJAG00000087022 #25	ENSCJAG00000083390	ENSCJAG00000072368	ENSCJAG00000073835	EDIL3 (ENSCJAG00000040007) #28	ENSCJAG00000077518	ENSCJAG00000085055	HAPLN1 (ENSCJAG00000063471) #29	ENSCJAG00000078201	VCAN (ENSCJAG00000011161) #30	XRCC4 (ENSCJAG00000011227) #32	ENSCJAG00000077051 #34	ENSCJAG00000042632 #35
Cebidae_a	ANCESTRAL SPECIES	3	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00390000003924.r	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00910000146984 #14	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00940000164875 #18	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.q.b #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00910000147249 #31	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT01100000266943	ENSGT00940000161999.t.a.a.b.b.a	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Capuchin	MODERN SPECIES	16							ARRDC3 (ENSCCAG00000037612) #13	ENSCCAG00000034004 #14	ADGRV1 (ENSCCAG00000034134) #15	LYSMD3 (ENSCCAG00000032472) #17	POLR3G (ENSCCAG00000032288) #18	MBLAC2 (ENSCCAG00000027096) #19	CETN3 (ENSCCAG00000021491) #20	ENSCCAG00000030581	MEF2C (ENSCCAG00000015818) #21	TMEM161B (ENSCCAG00000025610) #22	ENSCCAG00000033383	CCNH (ENSCCAG00000031898) #23	RASA1 (ENSCCAG00000027537) #24	ENSCCAG00000012037	ENSCCAG00000034902	COX7C (ENSCCAG00000021409) #25	ENSCCAG00000036566	EDIL3 (ENSCCAG00000010698) #28	HAPLN1 (ENSCCAG00000023370) #29	ENSCCAG00000029740 #31	VCAN (ENSCCAG00000026158) #30	XRCC4 (ENSCCAG00000021185) #32	TMEM167A (ENSCCAG00000021704) #34	ENSCCAG00000035743	ENSCCAG00000037444
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	43	SLF1 (ENSSBOG00000025909) #7	ENSSBOG00000019818 #8	KIAA0825 (ENSSBOG00000032086) #9	FAM172A (ENSSBOG00000019860) #10	ENSSBOG00000034164	NR2F1 (ENSSBOG00000021749) #12	ARRDC3 (ENSSBOG00000022253) #13	ADGRV1 (ENSSBOG00000031018) #15	LYSMD3 (ENSSBOG00000036033) #17	ENSSBOG00000029447 #18	MBLAC2 (ENSSBOG00000022218) #19	CETN3 (ENSSBOG00000033177) #20	MEF2C (ENSSBOG00000018897) #21	ENSSBOG00000031181	ENSSBOG00000019037	TMEM161B (ENSSBOG00000024706) #22	ENSSBOG00000028202	CCNH (ENSSBOG00000019490) #23	RASA1 (ENSSBOG00000024025) #24	COX7C (ENSSBOG00000023483) #25	ENSSBOG00000022503	EDIL3 (ENSSBOG00000034196) #28	HAPLN1 (ENSSBOG00000020151) #29	VCAN (ENSSBOG00000030525) #30	XRCC4 (ENSSBOG00000033444) #32	TMEM167A (ENSSBOG00000031099) #34	ENSSBOG00000033727	ENSSBOG00000035740	ENSSBOG00000034795	ENSSBOG00000025673	ENSSBOG00000019560 #35
Bolivian squirrel monkey	MODERN SPECIES	42	RASL11A (ENSSBOG00000025363)	ENSSBOG00000031441	ENSSBOG00000023626	GPR12 (ENSSBOG00000015914)	WASF3 (ENSSBOG00000025202)	CDK8 (ENSSBOG00000031790)	RNF6 (ENSSBOG00000022531)	SHISA2 (ENSSBOG00000010466)	ATP8A2 (ENSSBOG00000019269)	NUP58 (ENSSBOG00000026929)	MTMR6 (ENSSBOG00000028806)	AMER2 (ENSSBOG00000031615)	ENSSBOG00000023677	CENPJ (ENSSBOG00000025606)	RNF17 (ENSSBOG00000021661)	ENSSBOG00000033552 #22	ATP12A (ENSSBOG00000020405)	TEKT4 (ENSSBOG00000034878)	ENSSBOG00000031599	ANKRD20A1 (ENSSBOG00000029403)	SPATA13 (ENSSBOG00000026058)	ENSSBOG00000034652	ENSSBOG00000025239	MIPEP (ENSSBOG00000033812)	TNFRSF19 (ENSSBOG00000022185)	ENSSBOG00000033586	ENSSBOG00000035620	SACS (ENSSBOG00000035759)	SGCG (ENSSBOG00000029754)	FGF9 (ENSSBOG00000003885)	MICU2 (ENSSBOG00000019033)
Tarsier	MODERN SPECIES	1561															MEF2C (ENSTSYG00000003647) #21	TMEM161B (ENSTSYG00000001394) #22
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Lemuriformes	ANCESTRAL SPECIES	65	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880.xb #15	ENSGT00940000154880.yb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00910000147325
Mouse lemur	MODERN SPECIES	3	FAM81B (ENSMICG00000006677)	MCTP1 (ENSMICG00000006657)	SLF1 (ENSMICG00000001017) #7	KIAA0825 (ENSMICG00000000340) #9	ENSMICG00000046930	FAM172A (ENSMICG00000030403) #10	NR2F1 (ENSMICG00000005642) #12	ARRDC3 (ENSMICG00000005415) #13	ENSMICG00000045296 #15	ENSMICG00000010440 #15	LYSMD3 (ENSMICG00000029640) #17	ENSMICG00000038307	MBLAC2 (ENSMICG00000031053) #19	ENSMICG00000010705 #20	MEF2C (ENSMICG00000034356) #21	TMEM161B (ENSMICG00000028658) #22	CCNH (ENSMICG00000009500) #23	RASA1 (ENSMICG00000009491) #24	EFNA5 (ENSMICG00000026448)	FBXL17 (ENSMICG00000031242)	FER (ENSMICG00000002614)	PJA2 (ENSMICG00000002616)	MAN2A1 (ENSMICG00000015033)	ENSMICG00000013901	TMEM232 (ENSMICG00000004950)	ENSMICG00000037995	TSLP (ENSMICG00000000642)	WDR36 (ENSMICG00000000645)	CAMK4 (ENSMICG00000028198)	C5orf34 (ENSMICG00000008192)	TMEM267 (ENSMICG00000006817)
Lemuriformes_a	ANCESTRAL SPECIES	128	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880.xb #15	ENSGT00940000154880.yb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000148301	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00910000147325
Greater bamboo lemur	MODERN SPECIES	442	PRMT9 (ENSPSMG00000025116)	ARHGAP10 (ENSPSMG00000025109)	NR3C2 (ENSPSMG00000025077)	FAM172A (ENSPSMG00000025037) #10	NR2F1 (ENSPSMG00000025005) #12	ENSPSMG00000024994	ARRDC3 (ENSPSMG00000024984) #13	ADGRV1 (ENSPSMG00000024970) #15	LYSMD3 (ENSPSMG00000024935) #17	ENSPSMG00000024930	MBLAC2 (ENSPSMG00000024924) #19	CETN3 (ENSPSMG00000024919) #20	MEF2C (ENSPSMG00000024852) #21	ENSPSMG00000024714	ENSPSMG00000024703	TMEM161B (ENSPSMG00000024693) #22	CCNH (ENSPSMG00000024642) #23	ENSPSMG00000024615	RASA1 (ENSPSMG00000024559) #24	COX7C (ENSPSMG00000024426) #25	ENSPSMG00000024419	ENSPSMG00000024417
Coquerels sifaka	MODERN SPECIES	319	SLF1 (ENSPCOG00000019438) #7	KIAA0825 (ENSPCOG00000021681) #9	FAM172A (ENSPCOG00000024072) #10	NR2F1 (ENSPCOG00000017525) #12	ENSPCOG00000028394	ENSPCOG00000019606	ARRDC3 (ENSPCOG00000017963) #13	ENSPCOG00000026419 #15	ENSPCOG00000016607 #15	LYSMD3 (ENSPCOG00000009535) #17	ENSPCOG00000023427	MBLAC2 (ENSPCOG00000024583) #19	CETN3 (ENSPCOG00000008573) #20	MEF2C (ENSPCOG00000015854) #21	ENSPCOG00000019704	TMEM161B (ENSPCOG00000014869) #22	RASA1 (ENSPCOG00000002214) #24	ENSPCOG00000024010 #25
Bushbaby	MODERN SPECIES	132	FAM81B (ENSOGAG00000004107)	MCTP1 (ENSOGAG00000004102)	SLF1 (ENSOGAG00000004098) #7	KIAA0825 (ENSOGAG00000004093) #9	FAM172A (ENSOGAG00000015189) #10	NR2F1 (ENSOGAG00000007017) #12	ENSOGAG00000026077	ARRDC3 (ENSOGAG00000003067) #13	ADGRV1 (ENSOGAG00000012173) #15	LYSMD3 (ENSOGAG00000005564) #17	ENSOGAG00000005560	MBLAC2 (ENSOGAG00000005559) #19	CETN3 (ENSOGAG00000002383) #20	MEF2C (ENSOGAG00000028682) #21	ENSOGAG00000034873	TMEM161B (ENSOGAG00000009547) #22	ENSOGAG00000031737	ENSOGAG00000027160	CCNH (ENSOGAG00000010421) #23	RASA1 (ENSOGAG00000000055) #24	ENSOGAG00000029577	ENSOGAG00000032711	EDIL3 (ENSOGAG00000015620) #28	HAPLN1 (ENSOGAG00000009053) #29	VCAN (ENSOGAG00000034403) #30	XRCC4 (ENSOGAG00000009045) #32	TMEM167A (ENSOGAG00000009040) #34	ENSOGAG00000008165 #35	ENSOGAG00000008163 ##36	ATG10 (ENSOGAG00000008161) #37	SSBP2 (ENSOGAG00000002548)
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00390000006564 #8	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##36
Tree shrew	MODERN SPECIES	3198																TMEM161B (ENSTBEG00000010286) #22
Glires	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT01100000263873	ENSGT00960000186730	ENSGT00550000074784.b ##36
Lagomorpha	ANCESTRAL SPECIES	52	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01100000265337	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Rabbit	MODERN SPECIES	2	MCTP1 (ENSOCUG00000038402)	SLF1 (ENSOCUG00000004299) #7	KIAA0825 (ENSOCUG00000001921) #9	FAM172A (ENSOCUG00000007299) #10	ENSOCUG00000036738	ENSOCUG00000034601	ENSOCUG00000038895	ENSOCUG00000022494	ARRDC3 (ENSOCUG00000004378) #13	ADGRV1 (ENSOCUG00000017411) #15	LYSMD3 (ENSOCUG00000023323) #17	ENSOCUG00000010624	MBLAC2 (ENSOCUG00000026716) #19	CETN3 (ENSOCUG00000005711) #20	MEF2C (ENSOCUG00000029354) #21	TMEM161B (ENSOCUG00000005147) #22	ENSOCUG00000033164	ENSOCUG00000035816	CCNH (ENSOCUG00000004659) #23	RASA1 (ENSOCUG00000004646) #24	ENSOCUG00000039253 #25	ENSOCUG00000006715	ENSOCUG00000002319	ENSOCUG00000029582	ENSOCUG00000029665	EDIL3 (ENSOCUG00000017338) #28	HAPLN1 (ENSOCUG00000002630) #29	VCAN (ENSOCUG00000002613) #30	XRCC4 (ENSOCUG00000015052) #32	ENSOCUG00000009326 #34	ENSOCUG00000014110 #35
Pika	MODERN SPECIES	8520																TMEM161B (ENSOPRG00000015403) #22
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT00960000186730	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00960000186730	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Kangaroo rat	MODERN SPECIES	347								ENSDORG00000028809	Arrdc3 (ENSDORG00000027054) #13	Adgrv1 (ENSDORG00000006226) #15	Lysmd3 (ENSDORG00000002417) #17	ENSDORG00000002414	Mblac2 (ENSDORG00000002413) #19	Cetn3 (ENSDORG00000007233) #20	Mef2c (ENSDORG00000026015) #21	Tmem161b (ENSDORG00000012482) #22	Ccnh (ENSDORG00000001438) #23	Rasa1 (ENSDORG00000001435) #24	ENSDORG00000004968	Edil3 (ENSDORG00000000456) #28	ENSDORG00000026224	Hapln1 (ENSDORG00000015896) #29	ENSDORG00000023517 #30	Xrcc4 (ENSDORG00000015883) #32	Tmem167 (ENSDORG00000026989) #34	Atp6ap1l (ENSDORG00000025510) #35	Rps23 (ENSDORG00000001813) #36	Atg10 (ENSDORG00000009893) #37	ENSDORG00000024485	Ssbp2 (ENSDORG00000001305)	Acot12 (ENSDORG00000001303)
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00960000186730	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Lesser Egyptian jerboa	MODERN SPECIES	45	Skic3 (ENSJJAG00000023939)	Mctp1 (ENSJJAG00000006669)	Slf1 (ENSJJAG00000020386) #7	ENSJJAG00000012582	Fam172a (ENSJJAG00000018331) #10	Nr2f1 (ENSJJAG00000014194) #12	Arrdc3 (ENSJJAG00000020311) #13	ENSJJAG00000012827 #15	ENSJJAG00000021631 #15	ENSJJAG00000009537 #15	Lysmd3 (ENSJJAG00000023942) #17	ENSJJAG00000001250	Mblac2 (ENSJJAG00000005655) #19	Cetn3 (ENSJJAG00000023827) #20	Mef2c (ENSJJAG00000013244) #21	Tmem161b (ENSJJAG00000024009) #22	ENSJJAG00000011002 #23	Rasa1 (ENSJJAG00000012863) #24	ENSJJAG00000003776 #25	ENSJJAG00000001446	ENSJJAG00000023444	ENSJJAG00000012743	Edil3 (ENSJJAG00000010032) #28	Hapln1 (ENSJJAG00000012871) #29	ENSJJAG00000017589 #30	Xrcc4 (ENSJJAG00000013678) #32	ENSJJAG00000019023 #34	Atp6ap1l (ENSJJAG00000015522) #35	Rps23 (ENSJJAG00000014219) #36	Atg10 (ENSJJAG00000013587) #37	Ssbp2 (ENSJJAG00000010960)
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00960000186730	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Upper Galilee mountains blind mole rat	MODERN SPECIES	1066															Mef2c (ENSNGAG00000000223) #21	Tmem161b (ENSNGAG00000010820) #22	ENSNGAG00000000735 #23	Rasa1 (ENSNGAG00000000049) #24	ENSNGAG00000001491 #25	ENSNGAG00000001102
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00960000186730.a	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102.c.a #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Cricetidae_B	ANCESTRAL SPECIES	40	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01070000254013	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102.c.a #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Northern American deer mouse	MODERN SPECIES	6	Gpr150 (ENSPEMG00000000751)	Arsk (ENSPEMG00000014304)	Skic3 (ENSPEMG00000018623)	Fam81b (ENSPEMG00000020666)	Mctp1 (ENSPEMG00000014096)	Slf1 (ENSPEMG00000022525) #7	2210408I21Rik (ENSPEMG00000008563) #9	Fam172a (ENSPEMG00000009604) #10	Arrdc3 (ENSPEMG00000015553) #13	Adgrv1 (ENSPEMG00000016353) #15	ENSPEMG00000031428 #17	Polr3g (ENSPEMG00000027458)	Mblac2 (ENSPEMG00000030070) #19	Cetn3 (ENSPEMG00000016510) #20	Mef2c (ENSPEMG00000019761) #21	Tmem161b (ENSPEMG00000010319) #22	ENSPEMG00000025602	ENSPEMG00000027221	Ccnh (ENSPEMG00000022235) #23	Rasa1 (ENSPEMG00000021170) #24	Cox7c (ENSPEMG00000021189) #25	ENSPEMG00000022756	ENSPEMG00000030262	Gtf2h2 (ENSPEMG00000023230)	Ocln (ENSPEMG00000014068)	Marveld2 (ENSPEMG00000010720)	Rad17 (ENSPEMG00000008160)	ENSPEMG00000026043	Ccdc125 (ENSPEMG00000022475)	ENSPEMG00000023049	Cdk7 (ENSPEMG00000001737)
Prairie vole	MODERN SPECIES	6	2210408I21Rik (ENSMOCG00000000720) #9	Pou5f2 (ENSMOCG00000012326)	Fam172a (ENSMOCG00000003613) #10	Nr2f1 (ENSMOCG00000013379) #12	ENSMOCG00000011944	ENSMOCG00000020099	ENSMOCG00000015077	Arrdc3 (ENSMOCG00000006099) #13	ENSMOCG00000018170 #15	ENSMOCG00000013307 #15	Lysmd3 (ENSMOCG00000020333) #17	Polr3g (ENSMOCG00000014935)	Mblac2 (ENSMOCG00000011064) #19	Cetn3 (ENSMOCG00000009624) #20	Mef2c (ENSMOCG00000010324) #21	Tmem161b (ENSMOCG00000017125) #22	Ccnh (ENSMOCG00000005334) #23	Rasa1 (ENSMOCG00000020205) #24	Cox7c (ENSMOCG00000017709) #25	ENSMOCG00000016800	Edil3 (ENSMOCG00000001973) #28	Hapln1 (ENSMOCG00000018799) #29	ENSMOCG00000000187 #30	Xrcc4 (ENSMOCG00000015137) #32	Tmem167 (ENSMOCG00000013381) #34	ENSMOCG00000010468	ENSMOCG00000002610	Atp6ap1l (ENSMOCG00000020532) #35	ENSMOCG00000017478 #36	Atg10 (ENSMOCG00000014675) #37	ENSMOCG00000011514
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.bc #15	ENSGT00940000154880.cc #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102.c.a #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Chinese hamster chok1gshd	MODERN SPECIES	1	Fam172a (ENSCGRG00001019984) #10	Pou5f2 (ENSCGRG00001019940)	Nr2f1 (ENSCGRG00001020383) #12	ENSCGRG00001024656	Arrdc3 (ENSCGRG00001024801) #13	ENSCGRG00001024885 #15	ENSCGRG00001020880	ENSCGRG00001017247 #15	Lysmd3 (ENSCGRG00001004064) #17	ENSCGRG00001004958	Mblac2 (ENSCGRG00001018393) #19	Cetn3 (ENSCGRG00001000920) #20	ENSCGRG00001003095	ENSCGRG00001007435	Mef2c (ENSCGRG00001006934) #21	Tmem161b (ENSCGRG00001023931) #22	Ccnh (ENSCGRG00001024363) #23	Rasa1 (ENSCGRG00001024641) #24	ENSCGRG00001007486	Cox7c (ENSCGRG00001016442) #25	ENSCGRG00001000944	ENSCGRG00001002366	Edil3 (ENSCGRG00001004897) #28	Hapln1 (ENSCGRG00001024344) #29	ENSCGRG00001014126 #30	Xrcc4 (ENSCGRG00001022340) #32	Tmem167 (ENSCGRG00001013866) #34	Atp6ap1l (ENSCGRG00001003786) #35	Rps23 (ENSCGRG00001005361) #36	Atg10 (ENSCGRG00001012356) #37	Ssbp2 (ENSCGRG00001010940)
Golden Hamster	MODERN SPECIES	620	Slf1 (ENSMAUG00000012672) #7	2210408I21Rik (ENSMAUG00000016282) #9	Pou5f2 (ENSMAUG00000021043)	Fam172a (ENSMAUG00000015076) #10	Nr2f1 (ENSMAUG00000008658) #12	Arrdc3 (ENSMAUG00000010410) #13	ENSMAUG00000010057	ENSMAUG00000008116 #15	ENSMAUG00000021704 #15	Lysmd3 (ENSMAUG00000001625) #17	ENSMAUG00000008528	Mblac2 (ENSMAUG00000019084) #19	Cetn3 (ENSMAUG00000021390) #20	Mef2c (ENSMAUG00000015018) #21	ENSMAUG00000015735	Tmem161b (ENSMAUG00000014575) #22	Ccnh (ENSMAUG00000017406) #23	Rasa1 (ENSMAUG00000011139) #24	Cox7c (ENSMAUG00000005056) #25	Edil3 (ENSMAUG00000009286) #28	ENSMAUG00000022083	Hapln1 (ENSMAUG00000008810) #29	ENSMAUG00000011125 #30	Xrcc4 (ENSMAUG00000006508) #32	Tmem167 (ENSMAUG00000000975) #34	ENSMAUG00000001668	Atp6ap1l (ENSMAUG00000001232) #35	ENSMAUG00000011243 #36	Atg10 (ENSMAUG00000011026) #37	Ssbp2 (ENSMAUG00000010660)	Acot12 (ENSMAUG00000019809)
Murinae	ANCESTRAL SPECIES	24	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01070000254013	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Mus	ANCESTRAL SPECIES	22	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01070000254013	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01070000254013	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000165493	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Mus_B	ANCESTRAL SPECIES	13	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01070000254013	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634.c #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000165493	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Mus_C	ANCESTRAL SPECIES	10	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01070000254013	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634.c #23	ENSGT00940000155846 #24	ENSGT01030000235102	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000165493	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
spretus	MODERN SPECIES	4	Arsk (MGP_SPRETEiJ_G0019617)	Skic3 (MGP_SPRETEiJ_G0019618)	Mctp1 (MGP_SPRETEiJ_G0019619)	Slf1 (MGP_SPRETEiJ_G0019620) #7	2210408I21Rik (MGP_SPRETEiJ_G0019621) #9	Fam172a (MGP_SPRETEiJ_G0019622) #10	Pou5f2 (MGP_SPRETEiJ_G0019623)	Nr2f1 (MGP_SPRETEiJ_G0019624) #12	Arrdc3 (MGP_SPRETEiJ_G0019625) #13	Adgrv1 (MGP_SPRETEiJ_G0019626) #15	Lysmd3 (MGP_SPRETEiJ_G0019627) #17	Polr3g (MGP_SPRETEiJ_G0019628)	Mblac2 (MGP_SPRETEiJ_G0019629) #19	Cetn3 (MGP_SPRETEiJ_G0019630) #20	Mef2c (MGP_SPRETEiJ_G0019631) #21	Tmem161b (MGP_SPRETEiJ_G0019632) #22	Ccnh (MGP_SPRETEiJ_G0019633) #23	Rasa1 (MGP_SPRETEiJ_G0019634) #24	MGP_SPRETEiJ_G0019635	Edil3 (MGP_SPRETEiJ_G0019636) #28	Hapln1 (MGP_SPRETEiJ_G0019637) #29	Vcan (MGP_SPRETEiJ_G0019638) #30	Xrcc4 (MGP_SPRETEiJ_G0019639) #32	Tmem167 (MGP_SPRETEiJ_G0019640) #34	MGP_SPRETEiJ_G0019641	Atp6ap1l (MGP_SPRETEiJ_G0019642) #35	Rps23 (MGP_SPRETEiJ_G0019643) #36	Atg10 (MGP_SPRETEiJ_G0019644) #37	MGP_SPRETEiJ_G0019645	Ssbp2 (MGP_SPRETEiJ_G0019646)	Acot12 (MGP_SPRETEiJ_G0019647)
Steppe mouse	MODERN SPECIES	3320					Arrdc3 (ENSMSIG00000019683) #13	ENSMSIG00000019668	Adgrv1 (ENSMSIG00000019252) #15	Lysmd3 (ENSMSIG00000019227) #17	Polr3g (ENSMSIG00000019198)	Mblac2 (ENSMSIG00000019189) #19	Cetn3 (ENSMSIG00000019161) #20	Mef2c (ENSMSIG00000018916) #21	ENSMSIG00000018899	ENSMSIG00000018875	ENSMSIG00000018837	Tmem161b (ENSMSIG00000018760) #22
Mouse	MODERN SPECIES	4	Skic3 (ENSMUSG00000033991)	Fam81b (ENSMUSG00000109228)	Mctp1 (ENSMUSG00000021596)	Slf1 (ENSMUSG00000021597) #7	2210408I21Rik (ENSMUSG00000071252) #9	Fam172a (ENSMUSG00000064138) #10	Pou5f2 (ENSMUSG00000093668)	Nr2f1 (ENSMUSG00000069171) #12	Arrdc3 (ENSMUSG00000074794) #13	Adgrv1 (ENSMUSG00000069170) #15	Lysmd3 (ENSMUSG00000035840) #17	Polr3g (ENSMUSG00000035834)	Mblac2 (ENSMUSG00000051098) #19	Cetn3 (ENSMUSG00000021537) #20	Mef2c (ENSMUSG00000005583) #21	Tmem161b (ENSMUSG00000035762) #22	Ccnh (ENSMUSG00000021548) #23	Rasa1 (ENSMUSG00000021549) #24	Cox7c (ENSMUSG00000017778) #25	Edil3 (ENSMUSG00000034488) #28	Hapln1 (ENSMUSG00000021613) #29	Vcan (ENSMUSG00000021614) #30	Xrcc4 (ENSMUSG00000021615) #32	Tmem167 (ENSMUSG00000012422) #34	Atp6ap1l (ENSMUSG00000078958) #35	Rps23 (ENSMUSG00000049517) #36	Atg10 (ENSMUSG00000021619) #37	Ssbp2 (ENSMUSG00000003992)	Acot12 (ENSMUSG00000021620)	Zcchc9 (ENSMUSG00000021621)	Ckmt2 (ENSMUSG00000021622)
Ryukyu mouse	MODERN SPECIES	4	Arsk (MGP_CAROLIEiJ_G0018734)	Skic3 (MGP_CAROLIEiJ_G0018735)	Mctp1 (MGP_CAROLIEiJ_G0018736)	Slf1 (MGP_CAROLIEiJ_G0018737) #7	2210408I21Rik (MGP_CAROLIEiJ_G0018738) #9	Fam172a (MGP_CAROLIEiJ_G0018739) #10	Pou5f2 (MGP_CAROLIEiJ_G0018740)	Nr2f1 (MGP_CAROLIEiJ_G0018741) #12	Arrdc3 (MGP_CAROLIEiJ_G0018742) #13	Adgrv1 (MGP_CAROLIEiJ_G0018743) #15	Lysmd3 (MGP_CAROLIEiJ_G0018744) #17	Polr3g (MGP_CAROLIEiJ_G0018745)	Mblac2 (MGP_CAROLIEiJ_G0018746) #19	Cetn3 (MGP_CAROLIEiJ_G0018747) #20	Mef2c (MGP_CAROLIEiJ_G0018748) #21	Tmem161b (MGP_CAROLIEiJ_G0018749) #22	Ccnh (MGP_CAROLIEiJ_G0018750) #23	Rasa1 (MGP_CAROLIEiJ_G0018751) #24	Cox7c (MGP_CAROLIEiJ_G0018752) #25	Edil3 (MGP_CAROLIEiJ_G0018753) #28	Hapln1 (MGP_CAROLIEiJ_G0018754) #29	Vcan (MGP_CAROLIEiJ_G0018755) #30	Xrcc4 (MGP_CAROLIEiJ_G0018756) #32	Tmem167 (MGP_CAROLIEiJ_G0018757) #34	MGP_CAROLIEiJ_G0018758	Atp6ap1l (MGP_CAROLIEiJ_G0018759) #35	Rps23 (MGP_CAROLIEiJ_G0018760) #36	Atg10 (MGP_CAROLIEiJ_G0018761) #37	Ssbp2 (MGP_CAROLIEiJ_G0018762)	Acot12 (MGP_CAROLIEiJ_G0018763)	Zcchc9 (MGP_CAROLIEiJ_G0018764)
Shrew mouse	MODERN SPECIES	2	Arsk (MGP_PahariEiJ_G0015813)	Skic3 (MGP_PahariEiJ_G0015814)	Mctp1 (MGP_PahariEiJ_G0015815)	Slf1 (MGP_PahariEiJ_G0015816) #7	MGP_PahariEiJ_G0015817 #9	Fam172a (MGP_PahariEiJ_G0015818) #10	Pou5f2 (MGP_PahariEiJ_G0015819)	Nr2f1 (MGP_PahariEiJ_G0015820) #12	Arrdc3 (MGP_PahariEiJ_G0015821) #13	Adgrv1 (MGP_PahariEiJ_G0015822) #15	Lysmd3 (MGP_PahariEiJ_G0015823) #17	Polr3g (MGP_PahariEiJ_G0015824)	Mblac2 (MGP_PahariEiJ_G0015825) #19	Cetn3 (MGP_PahariEiJ_G0015826) #20	Mef2c (MGP_PahariEiJ_G0015827) #21	Tmem161b (MGP_PahariEiJ_G0015828) #22	Ccnh (MGP_PahariEiJ_G0015829) #23	Rasa1 (MGP_PahariEiJ_G0015830) #24	Cox7c (MGP_PahariEiJ_G0015831) #25	Edil3 (MGP_PahariEiJ_G0015832) #28	Hapln1 (MGP_PahariEiJ_G0015833) #29	Vcan (MGP_PahariEiJ_G0015834) #30	Xrcc4 (MGP_PahariEiJ_G0015835) #32	Tmem167 (MGP_PahariEiJ_G0015836) #34	Vmn1r75 (MGP_PahariEiJ_G0015837)	Atp6ap1l (MGP_PahariEiJ_G0015838) #35	Rps23 (MGP_PahariEiJ_G0015839) #36	Atg10 (MGP_PahariEiJ_G0015840) #37	Ssbp2 (MGP_PahariEiJ_G0015841)	Acot12 (MGP_PahariEiJ_G0015842)	Zcchc9 (MGP_PahariEiJ_G0015843)
Rat	DUPLICATION
Rat	MODERN SPECIES	11	Rpl24-ps11 (ENSRNOG00000062253)	RGD1560883 (ENSRNOG00000045639) #9	Fam172a (ENSRNOG00000013844) #10	ENSRNOG00000066236	Nr2f1 (ENSRNOG00000014795) #12	Arrdc3 (ENSRNOG00000045649) #13	ENSRNOG00000069696	Adgrv1 (ENSRNOG00000016306) #15	Lysmd3 (ENSRNOG00000016298) #17	Polr3g (ENSRNOG00000016260)	Mblac2 (ENSRNOG00000016252) #19	Cetn3 (ENSRNOG00000050877) #20	LOC120100658 (ENSRNOG00000065778)	Mef2c (ENSRNOG00000033134) #21	AABR07007399.1 (ENSRNOG00000049010)	Tmem161b (ENSRNOG00000032414) #22	Ccnh (ENSRNOG00000031656) #23	Rasa1 (ENSRNOG00000029185) #24	Cox7c (ENSRNOG00000030237) #25	ENSRNOG00000064811	Edil3 (ENSRNOG00000033064) #28	ENSRNOG00000062828	Hapln1 (ENSRNOG00000032002) #29	Vcan (ENSRNOG00000029212) #30	Xrcc4 (ENSRNOG00000029966) #32	Tmem167a (ENSRNOG00000016686) #34	Atp6ap1l (ENSRNOG00000040201) #35	Rps23 (ENSRNOG00000016580) ##36	Atg10 (ENSRNOG00000016342) #37	Ssbp2 (ENSRNOG00000016213)	Acot12 (ENSRNOG00000061414)
Rat	DUPLICATION
Rat	MODERN SPECIES	5	AABR07015941.1 (ENSRNOG00000058474)	Eif6-ps1 (ENSRNOG00000058513)	Adcy1 (ENSRNOG00000059479)	Ccdc201 (ENSRNOG00000068472)	Igfbp1 (ENSRNOG00000058780)	Igfbp3 (ENSRNOG00000061910)	LOC686087 (ENSRNOG00000058316)	Tns3 (ENSRNOG00000025695)	LOC120096659 (ENSRNOG00000061615)	Pkd1l1 (ENSRNOG00000004865)	Hus1 (ENSRNOG00000005141)	Sun3 (ENSRNOG00000005105)	LOC688553 (ENSRNOG00000037632)	Upp1 (ENSRNOG00000004972)	Abca13 (ENSRNOG00000025645)	ENSRNOG00000067374 #22	LOC685655 (ENSRNOG00000069782) #22	LOC498414 (ENSRNOG00000030665)	Vwc2 (ENSRNOG00000049076)	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026)
Rat	MODERN SPECIES	5	Eif6-ps1 (ENSRNOG00000058513)	Adcy1 (ENSRNOG00000059479)	Ccdc201 (ENSRNOG00000068472)	Igfbp1 (ENSRNOG00000058780)	Igfbp3 (ENSRNOG00000061910)	LOC686087 (ENSRNOG00000058316)	Tns3 (ENSRNOG00000025695)	LOC120096659 (ENSRNOG00000061615)	Pkd1l1 (ENSRNOG00000004865)	Hus1 (ENSRNOG00000005141)	Sun3 (ENSRNOG00000005105)	LOC688553 (ENSRNOG00000037632)	Upp1 (ENSRNOG00000004972)	Abca13 (ENSRNOG00000025645)	ENSRNOG00000067374 #22	LOC685655 (ENSRNOG00000069782) #22	LOC498414 (ENSRNOG00000030665)	Vwc2 (ENSRNOG00000049076)	Zpbp (ENSRNOG00000027801)	Spata48 (ENSRNOG00000037621)	Ikzf1 (ENSRNOG00000004444)	Fignl1 (ENSRNOG00000004440)	Ddc (ENSRNOG00000004327)	Grb10 (ENSRNOG00000004290)	Cobl (ENSRNOG00000004281)	LOC100361025 (ENSRNOG00000004090)	Vstm2a (ENSRNOG00000005180)	Sec61g (ENSRNOG00000005203)	Egfr (ENSRNOG00000004332)	Fbxo48 (ENSRNOG00000023026)	Plek (ENSRNOG00000005214)
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT01100000263873	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Marmotini	ANCESTRAL SPECIES	23	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.hc #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	48														MEF2C (ENSMMMG00000008360) #21	ENSMMMG00000008337	ENSMMMG00000008322 #22	ENSMMMG00000008314 #22	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #23	RASA1 (ENSMMMG00000008245) #24	COX7C (ENSMMMG00000008226) #25	EDIL3 (ENSMMMG00000008149) #28	HAPLN1 (ENSMMMG00000008103) #29	ENSMMMG00000008014 #30	XRCC4 (ENSMMMG00000008004) #32	ENSMMMG00000007986 #34	ENSMMMG00000007968 #35	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953) #36	ATG10 (ENSMMMG00000007945) #37	SSBP2 (ENSMMMG00000007897)
Alpin marmot	MODERN SPECIES	48													MEF2C (ENSMMMG00000008360) #21	ENSMMMG00000008337	ENSMMMG00000008322 #22	ENSMMMG00000008314 #22	ENSMMMG00000008302	CCNH (ENSMMMG00000008287) #23	RASA1 (ENSMMMG00000008245) #24	COX7C (ENSMMMG00000008226) #25	EDIL3 (ENSMMMG00000008149) #28	HAPLN1 (ENSMMMG00000008103) #29	ENSMMMG00000008014 #30	XRCC4 (ENSMMMG00000008004) #32	ENSMMMG00000007986 #34	ENSMMMG00000007968 #35	ENSMMMG00000007958	RPS23 (ENSMMMG00000007953) #36	ATG10 (ENSMMMG00000007945) #37	SSBP2 (ENSMMMG00000007897)	ACOT12 (ENSMMMG00000007863)
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	89	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.hc #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.k #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00910000147325	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Arctic ground squirrel	MODERN SPECIES	407															ENSUPAG00010000519	ENSUPAG00010000475 #22	ENSUPAG00010000464	CCNH (ENSUPAG00010000452) #23	RASA1 (ENSUPAG00010000404) #24	COX7C (ENSUPAG00010000397) #25
Squirrel	MODERN SPECIES	69	NOSTRIN (ENSSTOG00000007406)	SPC25 (ENSSTOG00000007433)	G6PC2 (ENSSTOG00000007441)	ABCB11 (ENSSTOG00000007463)	DHRS9 (ENSSTOG00000009896)	LRP2 (ENSSTOG00000009904)	ENSSTOG00000019847	ARRDC3 (ENSSTOG00000020450) #13	ENSSTOG00000031315 #15	ENSSTOG00000034589 #15	LYSMD3 (ENSSTOG00000008678) #17	ENSSTOG00000008664	MBLAC2 (ENSSTOG00000023398) #19	CETN3 (ENSSTOG00000012271) #20	MEF2C (ENSSTOG00000001883) #21	ENSSTOG00000011141 #22	CCNH (ENSSTOG00000000659) #23	RASA1 (ENSSTOG00000000649) #24	COX7C (ENSSTOG00000034413) #25	ENSSTOG00000023841	ENSSTOG00000022943	EDIL3 (ENSSTOG00000003893) #28	HAPLN1 (ENSSTOG00000003875) #29	ENSSTOG00000026716 #30	XRCC4 (ENSSTOG00000023468) #32	ENSSTOG00000031235 #34	ENSSTOG00000005230 #35	ENSSTOG00000000824 ##36	ATG10 (ENSSTOG00000005212) #37	SSBP2 (ENSSTOG00000001418)	ACOT12 (ENSSTOG00000001413)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b.l #22
Squirrel	MODERN SPECIES	271			ENSSTOG00000019623	ENSSTOG00000004326	ENSSTOG00000023688	ENSSTOG00000027672	ENSSTOG00000032396	ENSSTOG00000022024	ENSSTOG00000028684	H1-5 (ENSSTOG00000006133)	ENSSTOG00000006125	ENSSTOG00000020367	ENSSTOG00000023857	ENSSTOG00000031850	ENSSTOG00000030706	ENSSTOG00000031831 #22	ENSSTOG00000034579	ENSSTOG00000030356	PRSS16 (ENSSTOG00000005984)	H2AC12 (ENSSTOG00000007236)	H2BC12 (ENSSTOG00000029261)	ENSSTOG00000023310	ENSSTOG00000026144	ENSSTOG00000028749	ENSSTOG00000030654	ENSSTOG00000033773	ENSSTOG00000023645	ENSSTOG00000029728	ENSSTOG00000033423	ENSSTOG00000030249	ABT1 (ENSSTOG00000024481)
Arctic ground squirrel	MODERN SPECIES	630			ENSUPAG00010011892	ENSUPAG00010011906	ENSUPAG00010011908	ENSUPAG00010011928	ENSUPAG00010011929	H1-5 (ENSUPAG00010011937)	ENSUPAG00010011938	ENSUPAG00010011944	ENSUPAG00010011950	ENSUPAG00010011953	ENSUPAG00010011956	ENSUPAG00010011960	ENSUPAG00010011966	ENSUPAG00010011971 #22	ENSUPAG00010011977	ENSUPAG00010011989	ENSUPAG00010011996	ENSUPAG00010012005	ENSUPAG00010012019	ENSUPAG00010012024	ENSUPAG00010012049	ENSUPAG00010012055	ENSUPAG00010012062	ENSUPAG00010012068	ENSUPAG00010012075	ENSUPAG00010012083	ENSUPAG00010012088	ENSUPAG00010012096	ENSUPAG00010012111
Eurasian red squirrel	MODERN SPECIES	15	KIAA0825 (ENSSVLG00005006731) #9	FAM172A (ENSSVLG00005006807) #10	ENSSVLG00005006919	NR2F1 (ENSSVLG00005006944) #12	ARRDC3 (ENSSVLG00005007017) #13	ENSSVLG00005007056	ADGRV1 (ENSSVLG00005007157) #15	ENSSVLG00005007509	LYSMD3 (ENSSVLG00005007523) #17	ENSSVLG00005007556	ENSSVLG00005007572	MBLAC2 (ENSSVLG00005007608) #19	CETN3 (ENSSVLG00005007638) #20	ENSSVLG00005007697	MEF2C (ENSSVLG00005007790) #21	TMEM161B (ENSSVLG00005007974) #22	CCNH (ENSSVLG00005008091) #23	RASA1 (ENSSVLG00005008223) #24	ENSSVLG00005008592 #25	EDIL3 (ENSSVLG00005008647) #28	HAPLN1 (ENSSVLG00005008777) #29	VCAN (ENSSVLG00005008932) #30	XRCC4 (ENSSVLG00005009326) #32	ENSSVLG00005009361 #34	ENSSVLG00005009400 #35	ENSSVLG00005009458 ##36	ATG10 (ENSSVLG00005009563) #37	SSBP2 (ENSSVLG00005009766)	ACOT12 (ENSSVLG00005010445)	ZCCHC9 (ENSSVLG00005010577)	CKMT2 (ENSSVLG00005010620)
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.gc #15	ENSGT00940000158711 #17	ENSGT01100000264660.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.gc #15	ENSGT00940000158711 #17	ENSGT01100000264660.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Hystricomorpha_b	ANCESTRAL SPECIES	50	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.gc #15	ENSGT00940000158711 #17	ENSGT01100000264660.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.x #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Long-tailed chinchilla	MODERN SPECIES	125	MCTP1 (ENSCLAG00000004952)	SLF1 (ENSCLAG00000005160) #7	KIAA0825 (ENSCLAG00000005311) #9	FAM172A (ENSCLAG00000005472) #10	NR2F1 (ENSCLAG00000005596) #12	ARRDC3 (ENSCLAG00000005661) #13	ENSCLAG00000005769 #15	ENSCLAG00000005851 #15	ENSCLAG00000006022 #15	LYSMD3 (ENSCLAG00000006052) #17	ENSCLAG00000006118	MBLAC2 (ENSCLAG00000006185) #19	CETN3 (ENSCLAG00000006215) #20	MEF2C (ENSCLAG00000003422) #21	ENSCLAG00000003728	TMEM161B (ENSCLAG00000003850) #22	CCNH (ENSCLAG00000004012) #23	RASA1 (ENSCLAG00000004110) #24	ENSCLAG00000004179 #25	EDIL3 (ENSCLAG00000004305) #28	HAPLN1 (ENSCLAG00000004483) #29	ENSCLAG00000004575 #30	XRCC4 (ENSCLAG00000004677) #32	TMEM167A (ENSCLAG00000004734) #34	Rps23 (ENSCLAG00000004798) #36	ENSCLAG00000004838	ATG10 (ENSCLAG00000004893) #37	SSBP2 (ENSCLAG00000004986)	ACOT12 (ENSCLAG00000005180)	ZCCHC9 (ENSCLAG00000005289)	CKMT2 (ENSCLAG00000005343)
Degu	MODERN SPECIES	170																TMEM161B (ENSODEG00000005530) #22	CCNH (ENSODEG00000005505) #23	RASA1 (ENSODEG00000005418) #24	ENSODEG00000019183	ENSODEG00000005383 #25	ENSODEG00000005376	ENSODEG00000005359	EDIL3 (ENSODEG00000005260) #28	HAPLN1 (ENSODEG00000005201) #29	ENSODEG00000005176 #30	ENSODEG00000005159	XRCC4 (ENSODEG00000005147) #32	ENSODEG00000005125 #34	ENSODEG00000005103 #35	RPS23 (ENSODEG00000005092) #36	ATG10 (ENSODEG00000005078) #37
Guinea pig	MODERN SPECIES	1	FAM81B (ENSCPOG00000005332)	MCTP1 (ENSCPOG00000005018)	SLF1 (ENSCPOG00000005012) #7	KIAA0825 (ENSCPOG00000002594) #9	FAM172A (ENSCPOG00000013935) #10	NR2F1 (ENSCPOG00000005883) #12	ARRDC3 (ENSCPOG00000002749) #13	ENSCPOG00000030916 #15	ENSCPOG00000004008 #15	ENSCPOG00000035017 #15	LYSMD3 (ENSCPOG00000031696) #17	ENSCPOG00000036643	MBLAC2 (ENSCPOG00000036054) #19	CETN3 (ENSCPOG00000023805) #20	MEF2C (ENSCPOG00000035485) #21	TMEM161B (ENSCPOG00000003613) #22	CCNH (ENSCPOG00000007894) #23	RASA1 (ENSCPOG00000007883) #24	COX7C (ENSCPOG00000037322) #25	EDIL3 (ENSCPOG00000006986) #28	HAPLN1 (ENSCPOG00000037148) #29	ENSCPOG00000039167 #30	XRCC4 (ENSCPOG00000012258) #32	TMEM167A (ENSCPOG00000026186) #34	ENSCPOG00000011131 #35	RPS23 (ENSCPOG00000037620) #36	ENSCPOG00000022705	ATG10 (ENSCPOG00000032098) #37	SSBP2 (ENSCPOG00000001712)	ACOT12 (ENSCPOG00000009718)	ZCCHC9 (ENSCPOG00000003947)
Naked mole-rat female	MODERN SPECIES	25	ENSHGLG00000049662	ENSHGLG00000009574 #13	ENSHGLG00000008871 #15	ENSHGLG00000043201	ENSHGLG00000048068	ENSHGLG00000042570 #15	ENSHGLG00000038073 #15	ENSHGLG00000036506	LYSMD3 (ENSHGLG00000039807) #17	ENSHGLG00000039707	MBLAC2 (ENSHGLG00000046616) #19	CETN3 (ENSHGLG00000036397) #20	MEF2C (ENSHGLG00000008715) #21	ENSHGLG00000042125	ENSHGLG00000002953	TMEM161B (ENSHGLG00000016157) #22	ENSHGLG00000012753	CCNH (ENSHGLG00000007779) #23	RASA1 (ENSHGLG00000005734) #24	ENSHGLG00000033884	COX7C (ENSHGLG00000032953) #25	EDIL3 (ENSHGLG00000013218) #28	HAPLN1 (ENSHGLG00000034114) #29	VCAN (ENSHGLG00000010244) #30	XRCC4 (ENSHGLG00000032875) #32	TMEM167A (ENSHGLG00000036731) #34	ENSHGLG00000036000 #35	ENSHGLG00000008165 ##36	ENSHGLG00000007844 #37
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000000672.a.b #22
Hedgehog	MODERN SPECIES	5758																TMEM161B (ENSEEUG00000014617) #22
Common shrew	MODERN SPECIES	4475																TMEM161B (ENSSARG00000012956) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.a.b ##36	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z #25	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.y.a #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Suina	ANCESTRAL SPECIES	11	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01100000264016	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z #25	ENSGT00390000018086.y.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Pig	MODERN SPECIES	10	SLF1 (ENSSSCG00000014163) #7	ENSSSCG00000062599	KIAA0825 (ENSSSCG00000014161) #9	FAM172A (ENSSSCG00000027608) #10	NR2F1 (ENSSSCG00000014157) #12	ENSSSCG00000046245	ENSSSCG00000056856	ARRDC3 (ENSSSCG00000014156) #13	ADGRV1 (ENSSSCG00000035025) #15	LYSMD3 (ENSSSCG00000024193) #17	ENSSSCG00000026233	MBLAC2 (ENSSSCG00000014152) #19	CETN3 (ENSSSCG00000014151) #20	MEF2C (ENSSSCG00000014149) #21	ENSSSCG00000050823	TMEM161B (ENSSSCG00000014148) #22	ENSSSCG00000048763	CCNH (ENSSSCG00000014147) #23	RASA1 (ENSSSCG00000014146) #24	ENSSSCG00000053558	COX7C (ENSSSCG00000040325) #25	ENSSSCG00000061130	EDIL3 (ENSSSCG00000026780) #28	HAPLN1 (ENSSSCG00000014137) #29	ENSSSCG00000038060	VCAN (ENSSSCG00000014136) #30	ENSSSCG00000045510	TMEM167A (ENSSSCG00000056442) #34	ENSSSCG00000057529	ENSSSCG00000047325	ENSSSCG00000014132 #35
Chacoan peccary	MODERN SPECIES	204	SKIC3 (ENSCWAG00000020750)	FAM81B (ENSCWAG00000020714)	MCTP1 (ENSCWAG00000019869)	SLF1 (ENSCWAG00000019739) #7	KIAA0825 (ENSCWAG00000019715) #9	ENSCWAG00000019685	FAM172A (ENSCWAG00000019628) #10	NR2F1 (ENSCWAG00000019554) #12	ARRDC3 (ENSCWAG00000019512) #13	ADGRV1 (ENSCWAG00000019126) #15	LYSMD3 (ENSCWAG00000019073) #17	ENSCWAG00000019055	MBLAC2 (ENSCWAG00000019036) #19	CETN3 (ENSCWAG00000019002) #20	MEF2C (ENSCWAG00000018755) #21	TMEM161B (ENSCWAG00000018662) #22	CCNH (ENSCWAG00000018608) #23	RASA1 (ENSCWAG00000018315) #24	COX7C (ENSCWAG00000018267) #25	EDIL3 (ENSCWAG00000018152) #28	HAPLN1 (ENSCWAG00000018099) #29	VCAN (ENSCWAG00000017930) #30	XRCC4 (ENSCWAG00000017866) #32	TMEM167A (ENSCWAG00000017841) #34	ENSCWAG00000017781 #35	RPS23 (ENSCWAG00000017751) #36	ATG10 (ENSCWAG00000017706) #37	SSBP2 (ENSCWAG00000017558)	ACOT12 (ENSCWAG00000017413)	ZCCHC9 (ENSCWAG00000017376)	CKMT2 (ENSCWAG00000017315)
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z #25	ENSGT00740000115534.a.b.f.a.b	ENSGT00390000018086.y.a #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Cetacea	ANCESTRAL SPECIES	1	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000154925.h	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00960000190376.a	ENSGT00940000157995 #20	ENSGT00510000047137.c.b	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.y.a #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00960000190376.a	ENSGT00940000157995 #20	ENSGT00510000047137.c.b	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.y.a #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00960000190376.a	ENSGT00940000157995 #20	ENSGT00510000047137.c.b	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.y.a #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.s.b #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00960000190376.a	ENSGT00940000157995 #20	ENSGT00510000047137.c.b	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.y.a.c #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.s.b #34	ENSGT00940000154612.n	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000154925.h	ENSGT00940000154383.h.b	ENSGT00940000155411.c #13	ENSGT01000000220781	ENSGT00940000154880.lb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00960000190376.a	ENSGT00940000157995 #20	ENSGT00510000047137.c.b	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.y.a.c #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000155186.s.b #34	ENSGT00940000154612.n	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Narwhal	MODERN SPECIES	298	FAM172A (ENSMMNG00015006089) #10	NR2F1 (ENSMMNG00015006059) #12	ENSMMNG00015006040	ENSMMNG00015006035	ARRDC3 (ENSMMNG00015006011) #13	ENSMMNG00015006000	ADGRV1 (ENSMMNG00015005901) #15	LYSMD3 (ENSMMNG00015005843) #17	ENSMMNG00015005829	MBLAC2 (ENSMMNG00015005814) #19	ENSMMNG00015005807	CETN3 (ENSMMNG00015005786) #20	ENSMMNG00015005764	MEF2C (ENSMMNG00015005678) #21	ENSMMNG00015005616	TMEM161B (ENSMMNG00015005563) #22	CCNH (ENSMMNG00015005516) #23	RASA1 (ENSMMNG00015005429) #24	ENSMMNG00015005384 #25	EDIL3 (ENSMMNG00015005343) #28	ENSMMNG00015005323	HAPLN1 (ENSMMNG00015005308) #29	VCAN (ENSMMNG00015005267) #30	ENSMMNG00015005224	XRCC4 (ENSMMNG00015005213) #32	ENSMMNG00015005197 #34	ENSMMNG00015009107	ENSMMNG00015009097 #35	ENSMMNG00015009087 #36	ATG10 (ENSMMNG00015009080) #37	SSBP2 (ENSMMNG00015009022)
Beluga whale	MODERN SPECIES	71	FAM172A (ENSDLEG00000012512) #10	NR2F1 (ENSDLEG00000012558) #12	ENSDLEG00000012567	ENSDLEG00000012573	ARRDC3 (ENSDLEG00000012589) #13	ENSDLEG00000012603	ENSDLEG00000012615 #15	ENSDLEG00000012741 #15	LYSMD3 (ENSDLEG00000012794) #17	POLR3G (ENSDLEG00000012841)	MBLAC2 (ENSDLEG00000012852) #19	ENSDLEG00000012856	CETN3 (ENSDLEG00000012868) #20	MEF2C (ENSDLEG00000012940) #21	ENSDLEG00000012966	TMEM161B (ENSDLEG00000012991) #22	CCNH (ENSDLEG00000013031) #23	RASA1 (ENSDLEG00000013059) #24	ENSDLEG00000013150 #25	EDIL3 (ENSDLEG00000013171) #28	HAPLN1 (ENSDLEG00000013237) #29	VCAN (ENSDLEG00000013258) #30	XRCC4 (ENSDLEG00000013308) #32	ENSDLEG00000013342 #34	ENSDLEG00000013363	RPS23 (ENSDLEG00000013381) ##36	ATG10 (ENSDLEG00000013394) #37	SSBP2 (ENSDLEG00000013445)	ACOT12 (ENSDLEG00000013510)	ZCCHC9 (ENSDLEG00000013535)	CKMT2 (ENSDLEG00000013554)
Vaquita	MODERN SPECIES	14	ENSPSNG00000001316	FAM172A (ENSPSNG00000001390) #10	ENSPSNG00000001456	NR2F1 (ENSPSNG00000001479) #12	ENSPSNG00000001514	ENSPSNG00000001530	ARRDC3 (ENSPSNG00000001549) #13	ADGRV1 (ENSPSNG00000001637) #15	LYSMD3 (ENSPSNG00000001854) #17	ENSPSNG00000001891	MBLAC2 (ENSPSNG00000001913) #19	ENSPSNG00000001923	CETN3 (ENSPSNG00000001948) #20	MEF2C (ENSPSNG00000002155) #21	ENSPSNG00000002482	TMEM161B (ENSPSNG00000002519) #22	CCNH (ENSPSNG00000002571) #23	RASA1 (ENSPSNG00000002638) #24	ENSPSNG00000002806 #25	EDIL3 (ENSPSNG00000002853) #28	ENSPSNG00000002915	HAPLN1 (ENSPSNG00000002928) #29	VCAN (ENSPSNG00000002974) #30	XRCC4 (ENSPSNG00000003042) #32	ENSPSNG00000003056	TMEM167A (ENSPSNG00000003071) #34	ENSPSNG00000003094	RPS23 (ENSPSNG00000003143) #36	ATG10 (ENSPSNG00000003163) #37	SSBP2 (ENSPSNG00000003238)	ACOT12 (ENSPSNG00000003353)
Dolphin	MODERN SPECIES	4850																TMEM161B (ENSTTRG00000006087) #22
Sperm whale	MODERN SPECIES	19	KIAA0825 (ENSPCTG00005007436) #9	ENSPCTG00005007392	FAM172A (ENSPCTG00005007280) #10	NR2F1 (ENSPCTG00005007190) #12	ENSPCTG00005007157	ENSPCTG00005007141	ARRDC3 (ENSPCTG00005007110) #13	ENSPCTG00005007095	ADGRV1 (ENSPCTG00005006712) #15	LYSMD3 (ENSPCTG00005006625) #17	POLR3G (ENSPCTG00005006608)	MBLAC2 (ENSPCTG00005006581) #19	CETN3 (ENSPCTG00005006544) #20	MEF2C (ENSPCTG00005006331) #21	ENSPCTG00005006281	TMEM161B (ENSPCTG00005006187) #22	ENSPCTG00005006131	ENSPCTG00005006111	CCNH (ENSPCTG00005006072) #23	RASA1 (ENSPCTG00005005901) #24	COX7C (ENSPCTG00005005822) #25	ENSPCTG00005005787	EDIL3 (ENSPCTG00005005744) #28	ENSPCTG00005005670	HAPLN1 (ENSPCTG00005005652) #29	VCAN (ENSPCTG00005005066) #30	XRCC4 (ENSPCTG00005004952) #32	ENSPCTG00005004922 #34	ENSPCTG00005004898 #35	RPS23 (ENSPCTG00005004877) #36	ENSPCTG00005004844
Blue whale	MODERN SPECIES	14	ENSBMSG00010001695	FAM172A (ENSBMSG00010001641) #10	NR2F1 (ENSBMSG00010001599) #12	ENSBMSG00010001583	ARRDC3 (ENSBMSG00010001576) #13	ENSBMSG00010001567	ENSBMSG00010001561	ADGRV1 (ENSBMSG00010001495) #15	LYSMD3 (ENSBMSG00010001422) #17	ENSBMSG00010001406	MBLAC2 (ENSBMSG00010001393) #19	ENSBMSG00010001381	CETN3 (ENSBMSG00010001364) #20	ENSBMSG00010001350	MEF2C (ENSBMSG00010000526) #21	TMEM161B (ENSBMSG00010000201) #22	ENSBMSG00010000148	CCNH (ENSBMSG00010000119) #23	RASA1 (ENSBMSG00010000084) #24	ENSBMSG00010000023 #25	EDIL3 (ENSBMSG00010007186) #28	ENSBMSG00010007170	HAPLN1 (ENSBMSG00010007160) #29	VCAN (ENSBMSG00010007115) #30	XRCC4 (ENSBMSG00010007092) #32	ENSBMSG00010007076 #34	RPS23 (ENSBMSG00010007033) #36	ATG10 (ENSBMSG00010007011) #37	SSBP2 (ENSBMSG00010006966)	ACOT12 (ENSBMSG00010006914)	ENSBMSG00010006899
Pecora	ANCESTRAL SPECIES		ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.h.a.b.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Percora_a	ANCESTRAL SPECIES		ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.h.a.b.a.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Bovidae	ANCESTRAL SPECIES		ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.h.a.b.a.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.h.a.b.a.a.a.b #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Goat	MODERN SPECIES	26	SKIC3 (ENSCHIG00000019341)	FAM81B (ENSCHIG00000011215)	MCTP1 (ENSCHIG00000011686)	SLF1 (ENSCHIG00000015215) #7	KIAA0825 (ENSCHIG00000016143) #9	FAM172A (ENSCHIG00000008440) #10	NR2F1 (ENSCHIG00000010694) #12	ARRDC3 (ENSCHIG00000026437) #13	ADGRV1 (ENSCHIG00000025783) #15	LYSMD3 (ENSCHIG00000003504) #17	ENSCHIG00000018071	MBLAC2 (ENSCHIG00000023453) #19	CETN3 (ENSCHIG00000016019) #20	ENSCHIG00000020592	MEF2C (ENSCHIG00000016206) #21	TMEM161B (ENSCHIG00000026629) #22	ENSCHIG00000009148	ENSCHIG00000011671	CCNH (ENSCHIG00000023767) #23	RASA1 (ENSCHIG00000014118) #24	ENSCHIG00000026992 #25	ENSCHIG00000018614 #16	EDIL3 (ENSCHIG00000020190) #28	HAPLN1 (ENSCHIG00000023635) #29	VCAN (ENSCHIG00000026117) #30	XRCC4 (ENSCHIG00000015879) #32	ENSCHIG00000010267	ENSCHIG00000012625 #34	ENSCHIG00000026375 #35	RPS23 (ENSCHIG00000014944) #36	ATG10 (ENSCHIG00000023237) #37
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020007207	FAM172A (ENSOARG00020007055) #10	NR2F1 (ENSOARG00020006905) #12	ENSOARG00020023877	ENSOARG00020023867	ARRDC3 (ENSOARG00020023796) #13	ENSOARG00020023738 #15	ENSOARG00020023494 #15	LYSMD3 (ENSOARG00020023468) #17	POLR3G (ENSOARG00020023448)	MBLAC2 (ENSOARG00020023430) #19	CETN3 (ENSOARG00020023394) #20	MEF2C (ENSOARG00020023218) #21	ENSOARG00020023187	ENSOARG00020023175	TMEM161B (ENSOARG00020022987) #22	CCNH (ENSOARG00020022925) #23	RASA1 (ENSOARG00020021922) #24	ENSOARG00020021822 #25	ENSOARG00020021797	EDIL3 (ENSOARG00020021700) #28	HAPLN1 (ENSOARG00020021646) #29	VCAN (ENSOARG00020021234) #30	XRCC4 (ENSOARG00020021156) #32	ENSOARG00020021132	TMEM167A (ENSOARG00020021065) #34	RPS23 (ENSOARG00020020958) #36	ENSOARG00020020926	ATG10 (ENSOARG00020020709) #37	SSBP2 (ENSOARG00020017360)	ACOT12 (ENSOARG00020017094)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00390000013276.o.b	ENSGT00940000157492.b #21	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t.c.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Bos	ANCESTRAL SPECIES	3	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00390000013276.o.b	ENSGT00940000157492.b #21	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t.c.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00990000212475	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00390000013276.o.b	ENSGT00940000157492.b #21	ENSGT00960000192799	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000011776.i.b.a	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t.c.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Wild yak	MODERN SPECIES	1832													MEF2C (ENSBMUG00000015696) #21	ENSBMUG00000015929	ENSBMUG00000015931	TMEM161B (ENSBMUG00000015973) #22	ENSBMUG00000015985	CCNH (ENSBMUG00000016014) #23	RASA1 (ENSBMUG00000016181) #24	ENSBMUG00000016224	ENSBMUG00000016244 #25
Domestic yak	MODERN SPECIES	27	ENSBGRG00000006911	FAM172A (ENSBGRG00000006622) #10	NR2F1 (ENSBGRG00000006526) #12	ENSBGRG00000006497	ENSBGRG00000006489	ARRDC3 (ENSBGRG00000006397) #13	ENSBGRG00000006380	ADGRV1 (ENSBGRG00000005790) #15	LYSMD3 (ENSBGRG00000005743) #17	ENSBGRG00000005682	MBLAC2 (ENSBGRG00000005658) #19	CETN3 (ENSBGRG00000005546) #20	ENSBGRG00000005517	ENSBGRG00000005495	MEF2C (ENSBGRG00000003562) #21	TMEM161B (ENSBGRG00000003465) #22	ENSBGRG00000003441	CCNH (ENSBGRG00000003393) #23	RASA1 (ENSBGRG00000003000) #24	ENSBGRG00000002911	ENSBGRG00000002891 #25	ENSBGRG00000002876	EDIL3 (ENSBGRG00000002823) #28	HAPLN1 (ENSBGRG00000002793) #29	ENSBGRG00000002717 #30	XRCC4 (ENSBGRG00000002672) #32	ENSBGRG00000002643 #34	ENSBGRG00000002629 #35	RPS23 (ENSBGRG00000002552) #36	ENSBGRG00000002531	ATG10 (ENSBGRG00000002509) #37
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00390000013276.o.b	ENSGT00940000157492.b #21	ENSGT00910000147866	ENSGT00390000000672.a.b #22	ENSGT00940000153147.m.a.a.a.a.a	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000011776.i.b.a	ENSGT00390000018086.z.h.a.b.a.a.a.c #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.t.c.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed.g #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Cow	MODERN SPECIES	26	SLF1 (ENSBTAG00000006107) #7	KIAA0825 (ENSBTAG00000003144) #9	FAM172A (ENSBTAG00000050195) #10	NR2F1 (ENSBTAG00000017599) #12	ARRDC3 (ENSBTAG00000007116) #13	ADGRV1 (ENSBTAG00000006031) #15	LYSMD3 (ENSBTAG00000027713) #17	POLR3G (ENSBTAG00000044077)	MBLAC2 (ENSBTAG00000013612) #19	ENSBTAG00000049440	CETN3 (ENSBTAG00000014373) #20	ENSBTAG00000050847	ENSBTAG00000003258	MEF2C (ENSBTAG00000020701) #21	ENSBTAG00000050008	TMEM161B (ENSBTAG00000008484) #22	ENSBTAG00000022762	CCNH (ENSBTAG00000009566) #23	ENSBTAG00000039523	RASA1 (ENSBTAG00000009565) #24	ENSBTAG00000037434	ENSBTAG00000039555 #25	EDIL3 (ENSBTAG00000044033) #28	HAPLN1 (ENSBTAG00000012411) #29	VCAN (ENSBTAG00000014906) #30	XRCC4 (ENSBTAG00000024275) #32	TMEM167A (ENSBTAG00000039591) #34	ATP6AP1L (ENSBTAG00000050733) #35	RPS23 (ENSBTAG00000013358) #36	ATG10 (ENSBTAG00000038117) #37	SSBP2 (ENSBTAG00000013856)
Hybrid Bos Indicus	MODERN SPECIES	26	FAM81B (ENSBIXG00005031156)	MCTP1 (ENSBIXG00005031181)	SLF1 (ENSBIXG00005031201) #7	KIAA0825 (ENSBIXG00005031212) #9	FAM172A (ENSBIXG00005031221) #10	ENSBIXG00005031231	NR2F1 (ENSBIXG00005031237) #12	ARRDC3 (ENSBIXG00005031257) #13	ADGRV1 (ENSBIXG00005031266) #15	LYSMD3 (ENSBIXG00005031273) #17	ENSBIXG00005031282	MBLAC2 (ENSBIXG00005031285) #19	CETN3 (ENSBIXG00005001585) #20	ENSBIXG00005001676	MEF2C (ENSBIXG00005005207) #21	TMEM161B (ENSBIXG00005028965) #22	ENSBIXG00005005066	CCNH (ENSBIXG00005028904) #23	RASA1 (ENSBIXG00005028839) #24	ENSBIXG00005006645	ENSBIXG00005002359	ENSBIXG00005002395 #25	ENSBIXG00005004944	ENSBIXG00005004939	EDIL3 (ENSBIXG00005028476) #28	HAPLN1 (ENSBIXG00005028378) #29	VCAN (ENSBIXG00005028318) #30	XRCC4 (ENSBIXG00005006967) #32	ENSBIXG00005028035 #34	ENSBIXG00005007595 #35	RPS23 (ENSBIXG00005027957) #36
American bison	MODERN SPECIES	3376	MCTP1 (ENSBBBG00000023391)	SLF1 (ENSBBBG00000023440) #7	KIAA0825 (ENSBBBG00000023466) #9	FAM172A (ENSBBBG00000023483) #10	NR2F1 (ENSBBBG00000023546) #12	ARRDC3 (ENSBBBG00000023568) #13	ADGRV1 (ENSBBBG00000006195) #15	LYSMD3 (ENSBBBG00000006198) #17	ENSBBBG00000023804	MBLAC2 (ENSBBBG00000023810) #19	ENSBBBG00000023818	CETN3 (ENSBBBG00000023843) #20	ENSBBBG00000023857	MEF2C (ENSBBBG00000011258) #21	ENSBBBG00000011292	TMEM161B (ENSBBBG00000011329) #22	ENSBBBG00000011338	ENSBBBG00000011354 #23	RASA1 (ENSBBBG00000009045) #24	ENSBBBG00000011444	ENSBBBG00000011455 #25
Siberian musk deer	MODERN SPECIES	64														MEF2C (ENSMMSG00000010714) #21	ENSMMSG00000010663	TMEM161B (ENSMMSG00000010530) #22	CCNH (ENSMMSG00000010425) #23	RASA1 (ENSMMSG00000009941) #24	ENSMMSG00000009859 #25	ENSMMSG00000009810	EDIL3 (ENSMMSG00000009709) #28	HAPLN1 (ENSMMSG00000009670) #29	VCAN (ENSMMSG00000009492) #30	XRCC4 (ENSMMSG00000009442) #32	TMEM167A (ENSMMSG00000009408) #34	ENSMMSG00000009376 #35	RPS23 (ENSMMSG00000009338) #36	ATG10 (ENSMMSG00000009261) #37	ENSMMSG00000009140	ACOT12 (ENSMMSG00000008994)	ZCCHC9 (ENSMMSG00000008961)
Yarkand deer	MODERN SPECIES	32	FAM81B (ENSCHYG00000004584)	MCTP1 (ENSCHYG00000004399)	SLF1 (ENSCHYG00000004263) #7	KIAA0825 (ENSCHYG00000004130) #9	FAM172A (ENSCHYG00000004013) #10	ARRDC3 (ENSCHYG00000003906) #13	ADGRV1 (ENSCHYG00000003763) #15	LYSMD3 (ENSCHYG00000003721) #17	ENSCHYG00000003644	MBLAC2 (ENSCHYG00000003631) #19	CETN3 (ENSCHYG00000003610) #20	ENSCHYG00000003593	ENSCHYG00000003578	MEF2C (ENSCHYG00000003492) #21	ENSCHYG00000003464	TMEM161B (ENSCHYG00000003346) #22	CCNH (ENSCHYG00000003238) #23	RASA1 (ENSCHYG00000003079) #24	ENSCHYG00000003033 #25	EDIL3 (ENSCHYG00000002937) #28	HAPLN1 (ENSCHYG00000002889) #29	VCAN (ENSCHYG00000002720) #30	XRCC4 (ENSCHYG00000002672) #32	ENSCHYG00000002651 #34	ENSCHYG00000002635	ENSCHYG00000002627 #35	RPS23 (ENSCHYG00000002604) #36	ATG10 (ENSCHYG00000002572) #37	ENSCHYG00000002550	ENSCHYG00000002539	SSBP2 (ENSCHYG00000002111)
Camelidae	ANCESTRAL SPECIES	1	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a.ed #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Arabian camel	MODERN SPECIES	22	FAM81B (ENSCDRG00005012550)	MCTP1 (ENSCDRG00005012739)	SLF1 (ENSCDRG00005013652) #7	KIAA0825 (ENSCDRG00005013715) #9	FAM172A (ENSCDRG00005013822) #10	POU5F2 (ENSCDRG00005013944)	NR2F1 (ENSCDRG00005014004) #12	ENSCDRG00005014036	ARRDC3 (ENSCDRG00005014088) #13	ADGRV1 (ENSCDRG00005014220) #15	LYSMD3 (ENSCDRG00005014481) #17	ENSCDRG00005014536	MBLAC2 (ENSCDRG00005014578) #19	CETN3 (ENSCDRG00005014609) #20	MEF2C (ENSCDRG00005014686) #21	TMEM161B (ENSCDRG00005015359) #22	CCNH (ENSCDRG00005015934) #23	RASA1 (ENSCDRG00005016008) #24	ENSCDRG00005016325 #25	EDIL3 (ENSCDRG00005016390) #28	ENSCDRG00005016462	HAPLN1 (ENSCDRG00005016491) #29	VCAN (ENSCDRG00005016571) #30	XRCC4 (ENSCDRG00005016772) #32	TMEM167A (ENSCDRG00005016802) #34	ENSCDRG00005016847 #35	RPS23 (ENSCDRG00005016870) ##36	ATG10 (ENSCDRG00005016936) #37	SSBP2 (ENSCDRG00005017010)	ACOT12 (ENSCDRG00005017206)	ZCCHC9 (ENSCDRG00005017268)
Alpaca	MODERN SPECIES	4530																TMEM161B (ENSVPAG00000009712) #22
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00390000006564 #8	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00940000165983	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT01030000234916	ENSGT00550000074784.a.b ##36
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.p #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.p #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Megabat	MODERN SPECIES	1893																TMEM161B (ENSPVAG00000011985) #22
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.p #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Microbat	MODERN SPECIES	937	SLF1 (ENSMLUG00000009211) #7	KIAA0825 (ENSMLUG00000008388) #9	FAM172A (ENSMLUG00000003067) #10	NR2F1 (ENSMLUG00000005238) #12	ENSMLUG00000026966	ENSMLUG00000023479	ENSMLUG00000028808	ARRDC3 (ENSMLUG00000009444) #13	ENSMLUG00000025001	ADGRV1 (ENSMLUG00000000281) #15	LYSMD3 (ENSMLUG00000030107) #17	ENSMLUG00000014954	MBLAC2 (ENSMLUG00000014952) #19	CETN3 (ENSMLUG00000029475) #20	MEF2C (ENSMLUG00000008230) #21	TMEM161B (ENSMLUG00000008633) #22	CCNH (ENSMLUG00000011533) #23	RASA1 (ENSMLUG00000011486) #24	ENSMLUG00000025365	ENSMLUG00000030456	COX7C (ENSMLUG00000026041) #25	ENSMLUG00000024030	ENSMLUG00000023755	EDIL3 (ENSMLUG00000011587) #28	HAPLN1 (ENSMLUG00000001603) #29	VCAN (ENSMLUG00000013757) #30	XRCC4 (ENSMLUG00000013754) #32	TMEM167A (ENSMLUG00000008924) #34	ENSMLUG00000013943 #35	ENSMLUG00000013939 ##36	ATG10 (ENSMLUG00000013935) #37
Greater horseshoe bat	MODERN SPECIES	25	SKIC3 (ENSRFEG00010007614)	FAM81B (ENSRFEG00010007483)	MCTP1 (ENSRFEG00010007150)	SLF1 (ENSRFEG00010007047) #7	KIAA0825 (ENSRFEG00010006998) #9	FAM172A (ENSRFEG00010021303) #10	NR2F1 (ENSRFEG00010021267) #12	ARRDC3 (ENSRFEG00010021249) #13	ENSRFEG00010021237	ADGRV1 (ENSRFEG00010021104) #15	LYSMD3 (ENSRFEG00010021070) #17	ENSRFEG00010021057	MBLAC2 (ENSRFEG00010021048) #19	CETN3 (ENSRFEG00010021029) #20	MEF2C (ENSRFEG00010020935) #21	TMEM161B (ENSRFEG00010020897) #22	CCNH (ENSRFEG00010020861) #23	RASA1 (ENSRFEG00010020705) #24	ENSRFEG00010020642 #25	ENSRFEG00010020631	EDIL3 (ENSRFEG00010020588) #28	HAPLN1 (ENSRFEG00010020554) #29	VCAN (ENSRFEG00010020306) #30	XRCC4 (ENSRFEG00010020264) #32	ENSRFEG00010020237 #34	ENSRFEG00010020195 #35	RPS23 (ENSRFEG00010020074) #36	ATG10 (ENSRFEG00010020034) #37	ENSRFEG00010019999	SSBP2 (ENSRFEG00010019877)	ZCCHC9 (ENSRFEG00010019818)
Equus	ANCESTRAL SPECIES	6	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000164293	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260253	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.p #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.b ##36	ENSGT01100000266343	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Donkey	MODERN SPECIES	2	SKIC3 (ENSEASG00005019460)	FAM81B (ENSEASG00005019474)	MCTP1 (ENSEASG00005019479)	SLF1 (ENSEASG00005019489) #7	KIAA0825 (ENSEASG00005019503) #9	ENSEASG00005019515	FAM172A (ENSEASG00005019511) #10	NR2F1 (ENSEASG00005019516) #12	ARRDC3 (ENSEASG00005019528) #13	ADGRV1 (ENSEASG00005019581) #15	LYSMD3 (ENSEASG00005035009) #17	ENSEASG00005031545	MBLAC2 (ENSEASG00005019649) #19	CETN3 (ENSEASG00005019651) #20	MEF2C (ENSEASG00005019654) #21	TMEM161B (ENSEASG00005019662) #22	CCNH (ENSEASG00005019665) #23	ENSEASG00005019674 #24	ENSEASG00005025821 #25	ENSEASG00005023790	ENSEASG00005017159	NUDT15 (ENSEASG00005017157)	SUCLA2 (ENSEASG00005017152)	HTR2A (ENSEASG00005017150)	ENSEASG00005017144	LRCH1 (ENSEASG00005017132)	RUBCNL (ENSEASG00005017123)	LRRC63 (ENSEASG00005034276)	LCP1 (ENSEASG00005017115)	CPB2 (ENSEASG00005017110)	ZC3H13 (ENSEASG00005017100)
Horse	MODERN SPECIES	5	SKIC3 (ENSECAG00000025048)	FAM81B (ENSECAG00000008942)	MCTP1 (ENSECAG00000010242)	SLF1 (ENSECAG00000015790) #7	KIAA0825 (ENSECAG00000018095) #9	FAM172A (ENSECAG00000018274) #10	NR2F1 (ENSECAG00000018508) #12	ARRDC3 (ENSECAG00000019506) #13	ADGRV1 (ENSECAG00000021057) #15	LYSMD3 (ENSECAG00000024495) #17	POLR3G (ENSECAG00000024548)	MBLAC2 (ENSECAG00000024647) #19	CETN3 (ENSECAG00000024704) #20	MEF2C (ENSECAG00000024716) #21	ENSECAG00000049214	TMEM161B (ENSECAG00000025094) #22	RASA1 (ENSECAG00000005203) #24	CCNH (ENSECAG00000001853) #23	ENSECAG00000030211 #25	EDIL3 (ENSECAG00000015388) #28	HAPLN1 (ENSECAG00000016477) #29	VCAN (ENSECAG00000019596) #30	XRCC4 (ENSECAG00000020269) #32	TMEM167A (ENSECAG00000026834) #34	ATP6AP1L (ENSECAG00000020318) #35	RPS23 (ENSECAG00000031968) ##36	ENSECAG00000035044	ATG10 (ENSECAG00000026970) #37	SSBP2 (ENSECAG00000020782)	ACOT12 (ENSECAG00000021196)	ZCCHC9 (ENSECAG00000023186)
Carnivora	ANCESTRAL SPECIES	8	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00940000165983	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00940000153064.b.d	ENSGT00950000183016.E.b.b.b	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k #25	ENSGT00990000209137	ENSGT00390000018086.z.j.b #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.b #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00940000153064.b.d.f.b.a	ENSGT00950000183016.E.b.b.b.o	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k.f #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.b #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00390000006564 #8	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00910000147795	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k.f #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.b #34	ENSGT01000000215143	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A
Tiger	MODERN SPECIES	134								ARRDC3 (ENSPTIG00000017076) #13	ENSPTIG00000017493 #15	ENSPTIG00000020703 #15	LYSMD3 (ENSPTIG00000018455) #17	ENSPTIG00000018989	MBLAC2 (ENSPTIG00000019976) #19	CETN3 (ENSPTIG00000020886) #20	MEF2C (ENSPTIG00000021723) #21	TMEM161B (ENSPTIG00000016989) #22	CCNH (ENSPTIG00000019590) #23	RASA1 (ENSPTIG00000001406) #24	COX7C (ENSPTIG00000012097) #25	EDIL3 (ENSPTIG00000013147) #28	HAPLN1 (ENSPTIG00000015518) #29	ENSPTIG00000015827 #30	XRCC4 (ENSPTIG00000018886) #32	TMEM167A (ENSPTIG00000020380) #34	ENSPTIG00000020576	ENSPTIG00000020744 #35	RPS23 (ENSPTIG00000021170) #36	ENSPTIG00000006771	ATG10 (ENSPTIG00000007429) #37	SSBP2 (ENSPTIG00000010302)	ACOT12 (ENSPTIG00000016875)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000156031	ENSGT00390000006564 #8	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00940000164415	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.k.f #25	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.b #34	ENSGT01000000215143	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A
leopard	MODERN SPECIES	40								ARRDC3 (ENSPPRG00000024372) #13	ADGRV1 (ENSPPRG00000019300) #15	LYSMD3 (ENSPPRG00000006547) #17	ENSPPRG00000006320	MBLAC2 (ENSPPRG00000006169) #19	CETN3 (ENSPPRG00000005808) #20	MEF2C (ENSPPRG00000004433) #21	ENSPPRG00000025023	TMEM161B (ENSPPRG00000025054) #22	CCNH (ENSPPRG00000019964) #23	RASA1 (ENSPPRG00000018762) #24	COX7C (ENSPPRG00000013235) #25	ENSPPRG00000013140	EDIL3 (ENSPPRG00000012668) #28	HAPLN1 (ENSPPRG00000011520) #29	ENSPPRG00000010678 #30	XRCC4 (ENSPPRG00000008800) #32	ENSPPRG00000008129 #34	ENSPPRG00000007337	ENSPPRG00000007261 #35	RPS23 (ENSPPRG00000006877) #36	ENSPPRG00000005949	ATG10 (ENSPPRG00000005547) #37	SSBP2 (ENSPPRG00000004684)
lion	MODERN SPECIES		KIAA0825 (ENSPLOG00000010605) #9	FAM172A (ENSPLOG00000010788) #10	ENSPLOG00000010993	NR2F1 (ENSPLOG00000011053) #12	ENSPLOG00000011163	ENSPLOG00000011209	ARRDC3 (ENSPLOG00000011242) #13	ADGRV1 (ENSPLOG00000011381) #15	LYSMD3 (ENSPLOG00000012246) #17	ENSPLOG00000012266	MBLAC2 (ENSPLOG00000012299) #19	ENSPLOG00000012328	CETN3 (ENSPLOG00000012412) #20	MEF2C (ENSPLOG00000012545) #21	ENSPLOG00000012737	TMEM161B (ENSPLOG00000012789) #22	CCNH (ENSPLOG00000012933) #23	RASA1 (ENSPLOG00000013077) #24	COX7C (ENSPLOG00000013360) #25	ENSPLOG00000013409	EDIL3 (ENSPLOG00000013439) #28	HAPLN1 (ENSPLOG00000013633) #29	VCAN (ENSPLOG00000013768) #30	ENSPLOG00000013906	XRCC4 (ENSPLOG00000013925) #32	ENSPLOG00000013980 #34	ENSPLOG00000014059 #35	ENSPLOG00000014144 #36	ATG10 (ENSPLOG00000014220) #37	SSBP2 (ENSPLOG00000000026)	ACOT12 (ENSPLOG00000000044)
Cat	MODERN SPECIES		FAM81B (ENSFCAG00000013183)	MCTP1 (ENSFCAG00000014397)	SLF1 (ENSFCAG00000024671) #7	KIAA0825 (ENSFCAG00000028992) #9	FAM172A (ENSFCAG00000025443) #10	NR2F1 (ENSFCAG00000034642) #12	ENSFCAG00000024804	ARRDC3 (ENSFCAG00000019203) #13	ADGRV1 (ENSFCAG00000012405) #15	LYSMD3 (ENSFCAG00000029406) #17	ENSFCAG00000032444	MBLAC2 (ENSFCAG00000029005) #19	ENSFCAG00000024204	CETN3 (ENSFCAG00000022808) #20	MEF2C (ENSFCAG00000011595) #21	TMEM161B (ENSFCAG00000031564) #22	ENSFCAG00000050982	ENSFCAG00000048547	CCNH (ENSFCAG00000004828) #23	RASA1 (ENSFCAG00000004825) #24	COX7C (ENSFCAG00000034705) #25	ENSFCAG00000022528	ENSFCAG00000050071	EDIL3 (ENSFCAG00000002497) #28	HAPLN1 (ENSFCAG00000037432) #29	VCAN (ENSFCAG00000023191) #30	XRCC4 (ENSFCAG00000029944) #32	ENSFCAG00000045423 #34	ENSFCAG00000046011 #35	RPS23 (ENSFCAG00000008839) #36	ENSFCAG00000022315
Caniformia	DUPLICATION
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.a #25	ENSGT00390000018086.z.j.b.a.b #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37
Canidae	ANCESTRAL SPECIES	52	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Dingo	MODERN SPECIES	138	ENSCAFG00020006390	ENSCAFG00020006377	ENSCAFG00020006374	FAM172A (ENSCAFG00020006210) #10	NR2F1 (ENSCAFG00020006158) #12	ENSCAFG00020006119	ENSCAFG00020006057	ARRDC3 (ENSCAFG00020006041) #13	ENSCAFG00020006021 #15	ENSCAFG00020006001 #15	LYSMD3 (ENSCAFG00020005998) #17	ENSCAFG00020005997	MBLAC2 (ENSCAFG00020005995) #19	CETN3 (ENSCAFG00020005994) #20	MEF2C (ENSCAFG00020005345) #21	ENSCAFG00020005193 #22	ENSCAFG00020005076 #22	ENSCAFG00020005035	ENSCAFG00020005033	CCNH (ENSCAFG00020004794) #23	RASA1 (ENSCAFG00020003475) #24	ENSCAFG00020003332 #25	ENSCAFG00020003329	ENSCAFG00020003311	ENSCAFG00020003308	ENSCAFG00020003294	ENSCAFG00020003272	EDIL3 (ENSCAFG00020003249) #28	HAPLN1 (ENSCAFG00020003233) #29	ENSCAFG00020003203 #30	ENSCAFG00020003191
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.b #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000155186.q.b #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37
Ursidae	ANCESTRAL SPECIES	16	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.b #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A.b	ENSGT00940000160328
Ursus	ANCESTRAL SPECIES	142	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24
Polar bear	MODERN SPECIES	227					ENSUMAG00000005531	ENSUMAG00000005517	FAM172A (ENSUMAG00000005442) #10	ARRDC3 (ENSUMAG00000005422) #13	ADGRV1 (ENSUMAG00000005360) #15	LYSMD3 (ENSUMAG00000005355) #17	ENSUMAG00000005328	MBLAC2 (ENSUMAG00000005321) #19	CETN3 (ENSUMAG00000005320) #20	MEF2C (ENSUMAG00000005305) #21	ENSUMAG00000005303	ENSUMAG00000005297 #22	TMEM161B (ENSUMAG00000005292) #22	ENSUMAG00000005284	CCNH (ENSUMAG00000005276) #23	RASA1 (ENSUMAG00000004678) #24	ENSUMAG00000004591	ENSUMAG00000004580 #25
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.a #25	ENSGT00390000018086.z.j.b.a.b #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.b #25	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000155186.q.b #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A.b
Ursidae	ANCESTRAL SPECIES	16	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.b #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C
Ursus	ANCESTRAL SPECIES	142	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c #10	ENSGT00940000155411.c #13	ENSGT00940000154880.rb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24
American black bear	DUPLICATION
American black bear	MODERN SPECIES	6232																ENSUAMG00000006197 #22	ENSUAMG00000006200 #22
American black bear	MODERN SPECIES	6232															ENSUAMG00000006197 #22	ENSUAMG00000006200 #22
Polar bear	MODERN SPECIES	227				ENSUMAG00000005531	ENSUMAG00000005517	FAM172A (ENSUMAG00000005442) #10	ARRDC3 (ENSUMAG00000005422) #13	ADGRV1 (ENSUMAG00000005360) #15	LYSMD3 (ENSUMAG00000005355) #17	ENSUMAG00000005328	MBLAC2 (ENSUMAG00000005321) #19	CETN3 (ENSUMAG00000005320) #20	MEF2C (ENSUMAG00000005305) #21	ENSUMAG00000005303	ENSUMAG00000005297 #22	TMEM161B (ENSUMAG00000005292) #22	ENSUMAG00000005284	CCNH (ENSUMAG00000005276) #23	RASA1 (ENSUMAG00000004678) #24	ENSUMAG00000004591	ENSUMAG00000004580 #25
Giant Panda	MODERN SPECIES	13	FAM81B (ENSAMEG00000010710)	MCTP1 (ENSAMEG00000007915)	SLF1 (ENSAMEG00000007872) #7	KIAA0825 (ENSAMEG00000007828) #9	FAM172A (ENSAMEG00000006805) #10	NR2F1 (ENSAMEG00000003437) #12	ARRDC3 (ENSAMEG00000010468) #13	ENSAMEG00000027330	ADGRV1 (ENSAMEG00000013179) #15	ENSAMEG00000028431	LYSMD3 (ENSAMEG00000013235) #17	MBLAC2 (ENSAMEG00000026891) #19	ENSAMEG00000013240	CETN3 (ENSAMEG00000013258) #20	MEF2C (ENSAMEG00000013271) #21	TMEM161B (ENSAMEG00000013309) #22	CCNH (ENSAMEG00000013328) #23	RASA1 (ENSAMEG00000013362) #24	COX7C (ENSAMEG00000013441) #25	EDIL3 (ENSAMEG00000004721) #28	HAPLN1 (ENSAMEG00000007517) #29	VCAN (ENSAMEG00000007464) #30	XRCC4 (ENSAMEG00000007459) #32	TMEM167A (ENSAMEG00000023466) #34	ENSAMEG00000027104 #35	RPS23 (ENSAMEG00000015966) #36	ENSAMEG00000028746	ATG10 (ENSAMEG00000015949) #37	SSBP2 (ENSAMEG00000015913)	ACOT12 (ENSAMEG00000015867)	CKMT2 (ENSAMEG00000015838)
Mustelinae	ANCESTRAL SPECIES	38	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000164293	ENSGT00940000157876 #12	ENSGT00940000165378	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01100000264971	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00990000209137	ENSGT00940000158144 #28	ENSGT01010000224334	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.b #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A.b	ENSGT00940000160328	ENSGT00950000183041.C
American mink	MODERN SPECIES	119									ADGRV1 (ENSNVIG00000018907) #15	LYSM3 (ENSNVIG00000018880) #17	ENSNVIG00000018871	MBLC2 (ENSNVIG00000018860) #19	CETN3 (ENSNVIG00000018832) #20	ENSNVIG00000018814	MEF2C (ENSNVIG00000018410) #21	T161B (ENSNVIG00000018318) #22	CCNH (ENSNVIG00000018301) #23	RASA1 (ENSNVIG00000018196) #24	ENSNVIG00000018181
Ferret	MODERN SPECIES	231							ARRDC3 (ENSMPUG00000007709) #13	ADGRV1 (ENSMPUG00000007722) #15	LYSMD3 (ENSMPUG00000007898) #17	ENSMPUG00000007905	MBLAC2 (ENSMPUG00000007938) #19	CETN3 (ENSMPUG00000007940) #20	ENSMPUG00000019825	MEF2C (ENSMPUG00000007964) #21	ENSMPUG00000019826	TMEM161B (ENSMPUG00000007974) #22	CCNH (ENSMPUG00000007985) #23	RASA1 (ENSMPUG00000007995) #24	ENSMPUG00000008011	EDIL3 (ENSMPUG00000008054) #28	ENSMPUG00000008068	HAPLN1 (ENSMPUG00000008073) #29	VCAN (ENSMPUG00000008080) #30	XRCC4 (ENSMPUG00000008093) #32	ENSMPUG00000008101 #35	RPS23 (ENSMPUG00000008114) #36	ATG10 (ENSMPUG00000008122) #37	ENSMPUG00000008145	ACOT12 (ENSMPUG00000008154)	ZCCHC9 (ENSMPUG00000008276)	CKMT2 (ENSMPUG00000008281)
Canidae	ANCESTRAL SPECIES	52	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01100000263873	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Red fox	MODERN SPECIES	11	MCTP1 (ENSVVUG00000022085)	ENSVVUG00000022095	SLF1 (ENSVVUG00000022098) #7	KIAA0825 (ENSVVUG00000022102) #9	FAM172A (ENSVVUG00000022112) #10	NR2F1 (ENSVVUG00000022129) #12	ENSVVUG00000022154	ENSVVUG00000022156	ARRDC3 (ENSVVUG00000022162) #13	ADGRV1 (ENSVVUG00000022179) #15	LYSMD3 (ENSVVUG00000022480) #17	POLR3G (ENSVVUG00000022482)	MBLAC2 (ENSVVUG00000022485) #19	CETN3 (ENSVVUG00000022496) #20	MEF2C (ENSVVUG00000022531) #21	TMEM161B (ENSVVUG00000022547) #22	CCNH (ENSVVUG00000022568) #23	RASA1 (ENSVVUG00000022666) #24	ENSVVUG00000023203	ENSVVUG00000023210 #25	EDIL3 (ENSVVUG00000023242) #28	HAPLN1 (ENSVVUG00000023246) #29	VCAN (ENSVVUG00000023253) #30	XRCC4 (ENSVVUG00000023262) #32	ENSVVUG00000023272 #34	ENSVVUG00000023284 #35	RPS23 (ENSVVUG00000023287) #36	ENSVVUG00000023289	ATG10 (ENSVVUG00000023291) #37	SSBP2 (ENSVVUG00000023314)	ACOT12 (ENSVVUG00000023325)
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129.a	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b.a #22	ENSGT00390000000672.a.b.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086.z.j.b.a.a #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186.q.a #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01100000263873	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Dog	MODERN SPECIES	22	TTC37 (ENSCAFG00845013946)	ENSCAFG00845013980	FAM81B (ENSCAFG00845014005)	MCTP1 (ENSCAFG00845014193)	SLF1 (ENSCAFG00845014666) #7	KIAA0825 (ENSCAFG00845014903) #9	FAM172A (ENSCAFG00845015282) #10	NR2F1 (ENSCAFG00845015564) #12	ARRDC3 (ENSCAFG00845015988) #13	ADGRV1 (ENSCAFG00845016226) #15	LYSMD3 (ENSCAFG00845016559) #17	POLR3G (ENSCAFG00845016615)	MBLAC2 (ENSCAFG00845016669) #19	CETN3 (ENSCAFG00845016793) #20	MEF2C (ENSCAFG00845017289) #21	TMEM161B (ENSCAFG00845018131) #22	CCNH (ENSCAFG00845018630) #23	RASA1 (ENSCAFG00845018838) #24	ENSCAFG00845019491 #25	ENSCAFG00845019654	ENSCAFG00845019702	EDIL3 (ENSCAFG00845019823) #28	HAPLN1 (ENSCAFG00845019962) #29	VCAN (ENSCAFG00845020098) #30	XRCC4 (ENSCAFG00845020506) #32	TMEM167A (ENSCAFG00845020637) #34	ENSCAFG00845020741 #35	RPS23 (ENSCAFG00845020943) ##36	ENSCAFG00845021041	ENSCAFG00845021100 #37	SSBP2 (ENSCAFG00845021264)
Dingo	MODERN SPECIES	138	ENSCAFG00020006377	ENSCAFG00020006374	FAM172A (ENSCAFG00020006210) #10	NR2F1 (ENSCAFG00020006158) #12	ENSCAFG00020006119	ENSCAFG00020006057	ARRDC3 (ENSCAFG00020006041) #13	ENSCAFG00020006021 #15	ENSCAFG00020006001 #15	LYSMD3 (ENSCAFG00020005998) #17	ENSCAFG00020005997	MBLAC2 (ENSCAFG00020005995) #19	CETN3 (ENSCAFG00020005994) #20	MEF2C (ENSCAFG00020005345) #21	ENSCAFG00020005193 #22	ENSCAFG00020005076 #22	ENSCAFG00020005035	ENSCAFG00020005033	CCNH (ENSCAFG00020004794) #23	RASA1 (ENSCAFG00020003475) #24	ENSCAFG00020003332 #25	ENSCAFG00020003329	ENSCAFG00020003311	ENSCAFG00020003308	ENSCAFG00020003294	ENSCAFG00020003272	EDIL3 (ENSCAFG00020003249) #28	HAPLN1 (ENSCAFG00020003233) #29	ENSCAFG00020003203 #30	ENSCAFG00020003191	XRCC4 (ENSCAFG00020003038) #32
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Xenarthra	ANCESTRAL SPECIES	95	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25
Sloth	MODERN SPECIES	5128																TMEM161B (ENSCHOG00000010716) #22
Armadillo	MODERN SPECIES	2764	ENSDNOG00000047445	ENSDNOG00000039372	ENSDNOG00000031852	ENSDNOG00000047212	ARRDC3 (ENSDNOG00000007684) #13	ENSDNOG00000038531 #15	ENSDNOG00000041520 #15	ENSDNOG00000007596 #15	LYSMD3 (ENSDNOG00000034583) #17	ENSDNOG00000004195	MBLAC2 (ENSDNOG00000036816) #19	CETN3 (ENSDNOG00000039817) #20	ENSDNOG00000047108	MEF2C (ENSDNOG00000000377) #21	ENSDNOG00000036264	TMEM161B (ENSDNOG00000004317) #22	ENSDNOG00000007765 #23	RASA1 (ENSDNOG00000036632) #24	ENSDNOG00000043218	ENSDNOG00000030811 #25	ENSDNOG00000038287
Afrotheria	ANCESTRAL SPECIES	12															ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Afrotheria_a	ANCESTRAL SPECIES	12															ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Elephant	MODERN SPECIES	526															MEF2C (ENSLAFG00000013761) #21	TMEM161B (ENSLAFG00000011097) #22	CCNH (ENSLAFG00000028032) #23	RASA1 (ENSLAFG00000011060) #24	COX7C (ENSLAFG00000017502) #25	EDIL3 (ENSLAFG00000017730) #28	HAPLN1 (ENSLAFG00000010769) #29	VCAN (ENSLAFG00000002716) #30	ENSLAFG00000011855	TMEM167A (ENSLAFG00000009206) #34	ENSLAFG00000013186 #35	RPS23 (ENSLAFG00000031506) ##36	ATG10 (ENSLAFG00000013183) #37	SSBP2 (ENSLAFG00000012776)	ACOT12 (ENSLAFG00000012765)	ZCCHC9 (ENSLAFG00000012763)	CKMT2 (ENSLAFG00000011587)
Hyrax	MODERN SPECIES	4732																TMEM161B (ENSPCAG00000000149) #22
Tenrec	MODERN SPECIES	5605																TMEM161B (ENSETEG00000014985) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00390000001347.t	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00390000001347.t	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.kb #15	ENSGT00940000154880.jb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00390000001347.t	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.kb #15	ENSGT00940000154880.jb #15	ENSGT00940000158711 #17	ENSGT01090000260129	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00390000001347.t	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
koala	MODERN SPECIES	5	MCTP1 (ENSPCIG00000028564)	SLF1 (ENSPCIG00000028575) #7	KIAA0825 (ENSPCIG00000028606) #9	FAM172A (ENSPCIG00000028612) #10	NR2F1 (ENSPCIG00000028615) #12	ENSPCIG00000028622	ENSPCIG00000028447	ARRDC3 (ENSPCIG00000025721) #13	ENSPCIG00000000909 #15	ENSPCIG00000010004 #15	LYSMD3 (ENSPCIG00000004346) #17	ENSPCIG00000004353	MBLAC2 (ENSPCIG00000004357) #19	CETN3 (ENSPCIG00000004360) #20	MEF2C (ENSPCIG00000029504) #21	TMEM161B (ENSPCIG00000029514) #22	CCNH (ENSPCIG00000029526) #23	RASA1 (ENSPCIG00000029535) #24	ENSPCIG00000002439 #25	ENSPCIG00000003752	ENSPCIG00000002455	ENSPCIG00000036658	EDIL3 (ENSPCIG00000006442) #28	HAPLN1 (ENSPCIG00000007780) #29	ENSPCIG00000029893 #30	XRCC4 (ENSPCIG00000029896) #32	ENSPCIG00000032700 #34	ENSPCIG00000029898	ENSPCIG00000029899	ENSPCIG00000029901 #35	ENSPCIG00000029902 #36
Common wonbat	MODERN SPECIES	1013					SLF1 (ENSVURG00010017424) #7	KIAA0825 (ENSVURG00010017453) #9	FAM172A (ENSVURG00010017490) #10	ARRDC3 (ENSVURG00010017623) #13	ENSVURG00010017634 #15	ENSVURG00010017653 #15	LYSMD3 (ENSVURG00010017677) #17	ENSVURG00010017685	MBLAC2 (ENSVURG00010017691) #19	CETN3 (ENSVURG00010017696) #20	MEF2C (ENSVURG00010017717) #21	TMEM161B (ENSVURG00010017759) #22	CCNH (ENSVURG00010017770) #23	RASA1 (ENSVURG00010017779) #24	ENSVURG00010017797 #25	ENSVURG00010017806	ENSVURG00010017815	ENSVURG00010017826	EDIL3 (ENSVURG00010017835) #28	HAPLN1 (ENSVURG00010017842) #29	ENSVURG00010017848 #30	XRCC4 (ENSVURG00010017856) #32	ENSVURG00010017862 #34	ENSVURG00010017874 #36	ATG10 (ENSVURG00010017892) #37	ENSVURG00010017901	SSBP2 (ENSVURG00010017922)
Wallaby	MODERN SPECIES	6974																TMEM161B (ENSMEUG00000012159) #22
Tasmanian devil	MODERN SPECIES		SLF1 (ENSSHAG00000009650) #7	KIAA0825 (ENSSHAG00000010647) #9	FAM172A (ENSSHAG00000013743) #10	NR2F1 (ENSSHAG00000028061) #12	ENSSHAG00000020799	ARRDC3 (ENSSHAG00000012554) #13	ENSSHAG00000001791	ENSSHAG00000002123	ENSSHAG00000028977 #15	LYSMD3 (ENSSHAG00000030429) #17	ENSSHAG00000006647	ENSSHAG00000024161 #19	CETN3 (ENSSHAG00000026337) #20	ENSSHAG00000023543	MEF2C (ENSSHAG00000010347) #21	TMEM161B (ENSSHAG00000032244) #22	ENSSHAG00000030553	CCNH (ENSSHAG00000016764) #23	RASA1 (ENSSHAG00000016807) #24	COX7C (ENSSHAG00000026810) #25	ENSSHAG00000006286	EDIL3 (ENSSHAG00000005209) #28	HAPLN1 (ENSSHAG00000022951) #29	ENSSHAG00000007330 #30	XRCC4 (ENSSHAG00000009690) #32	TMEM167A (ENSSHAG00000029456) #34	ENSSHAG00000007765 #35	ENSSHAG00000030156	ENSSHAG00000008347 ##36	ENSSHAG00000028481 #36	ENSSHAG00000008505 #37
Opossum	MODERN SPECIES	2	MCTP1 (ENSMODG00000020121)	SLF1 (ENSMODG00000020124) #7	KIAA0825 (ENSMODG00000020128) #9	ENSMODG00000044848	FAM172A (ENSMODG00000020131) #10	NR2F1 (ENSMODG00000020132) #12	ARRDC3 (ENSMODG00000020163) #13	ADGRV1 (ENSMODG00000020196) #15	ENSMODG00000020220 #17	ENSMODG00000020218	ENSMODG00000020221 #19	CETN3 (ENSMODG00000020222) #20	ENSMODG00000042795	MEF2C (ENSMODG00000020223) #21	ENSMODG00000020225	TMEM161B (ENSMODG00000020226) #22	CCNH (ENSMODG00000020228) #23	RASA1 (ENSMODG00000020235) #24	COX7C (ENSMODG00000037063) #25	ENSMODG00000024868	ENSMODG00000041038	ENSMODG00000045346	EDIL3 (ENSMODG00000020246) #28	HAPLN1 (ENSMODG00000038203) #29	ENSMODG00000020252 #30	XRCC4 (ENSMODG00000020253) #32	ENSMODG00000040896 #34	ENSMODG00000037212 #35	RPS23 (ENSMODG00000020255) #36	ENSMODG00000024865 #37	ENSMODG00000044614
Platypus	MODERN SPECIES		SKIC3 (ENSOANG00000011060)	ENSOANG00000011063	MCTP1 (ENSOANG00000011064)	SLF1 (ENSOANG00000011065) #7	KIAA0825 (ENSOANG00000011067) #9	FAM172A (ENSOANG00000011068) #10	NR2F1 (ENSOANG00000046139) #12	ARRDC3 (ENSOANG00000011069) #13	ENSOANG00000043317 #15	ENSOANG00000011071 #15	LYSMD3 (ENSOANG00000011072) #17	ENSOANG00000046173	MBLAC2 (ENSOANG00000047148) #19	ENSOANG00000011075 #20	MEF2C (ENSOANG00000011076) #21	TMEM161B (ENSOANG00000011078) #22	CCNH (ENSOANG00000014752) #23	RASA1 (ENSOANG00000014753) #24	COX7C (ENSOANG00000014755) #25	ENSOANG00000048884	EDIL3 (ENSOANG00000014759) #28	HAPLN1 (ENSOANG00000014760) #29	ENSOANG00000014761 #30	ENSOANG00000014765 #32	TMEM167A (ENSOANG00000014766) #34	ENSOANG00000031637 #35	ATG10 (ENSOANG00000020641) #37	SSBP2 (ENSOANG00000014767)	ACOT12 (ENSOANG00000014768)	ZCCHC9 (ENSOANG00000014769)	CKMT2 (ENSOANG00000014771)
Sauria	ANCESTRAL SPECIES	5	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A	ENSGT00390000000672.a.b #22	ENSGT00940000154136	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000241481	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT01040000240833
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000241481	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT01040000240833	ENSGT00550000074784.a.b ##36
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000241481	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Australian saltwater crocodile	MODERN SPECIES	29	ARSK (ENSCPRG00005003817)	SKIC3 (ENSCPRG00005003135)	FAM81B (ENSCPRG00005003053)	MCTP1 (ENSCPRG00005003011)	SLF1 (ENSCPRG00005002977) #7	KIAA0825 (ENSCPRG00005002937) #9	FAM172A (ENSCPRG00005002912) #10	NR2F1 (ENSCPRG00005002896) #12	ARRDC3 (ENSCPRG00005002885) #13	ADGRV1 (ENSCPRG00005002739) #15	LYSMD3 (ENSCPRG00005002691) #17	ENSCPRG00005002687	MBLAC2 (ENSCPRG00005002685) #19	CETN3 (ENSCPRG00005002682) #20	MEF2C (ENSCPRG00005002661) #21	TMEM161B (ENSCPRG00005002646) #22	CCNH (ENSCPRG00005002621) #23	RASA1 (ENSCPRG00005002296) #24	COX7C (ENSCPRG00005002239) #25	ENSCPRG00005002231	EDIL3 (ENSCPRG00005002211) #28	HAPLN1 (ENSCPRG00005002178) #29	VCAN (ENSCPRG00005002150) #30	XRCC4 (ENSCPRG00005002138) #32	TMEM167A (ENSCPRG00005002127) #34	ENSCPRG00005002117 #35	ENSCPRG00005002110 ##36	ENSCPRG00005002107	RPS23 (ENSCPRG00005002101) #36	ENSCPRG00005002095	ATG10 (ENSCPRG00005002089) #37
Aves	ANCESTRAL SPECIES	4	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
African ostrich	MODERN SPECIES	207	ENSSCUG00000002636	RFESD (ENSSCUG00000002633)	ARSK (ENSSCUG00000002627)	SKIC3 (ENSSCUG00000002619)	FAM81B (ENSSCUG00000002616)	MCTP1 (ENSSCUG00000002612)	SLF1 (ENSSCUG00000002609) #7	KIAA0825 (ENSSCUG00000002604) #9	ARRDC3 (ENSSCUG00000002587) #13	ADGRV1 (ENSSCUG00000002570) #15	LYSMD3 (ENSSCUG00000002560) #17	ENSSCUG00000002557	CETN3 (ENSSCUG00000002551) #20	ENSSCUG00000002548	MEF2C (ENSSCUG00000002542) #21	TMEM161B (ENSSCUG00000002535) #22	CCNH (ENSSCUG00000002531) #23	RASA1 (ENSSCUG00000002498) #24	ENSSCUG00000002478
Neognathae	ANCESTRAL SPECIES	19	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A.b	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Galloanserae	ANCESTRAL SPECIES	18	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A.b.a.a	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT01070000254325.a.b.a	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102.k.a #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Japanese quail	MODERN SPECIES	699	RFESD (ENSCJPG00005012760)	ARSK (ENSCJPG00005012761)	SKIC3 (ENSCJPG00005012762)	FAM81B (ENSCJPG00005012763)	MCTP1 (ENSCJPG00005012764)	SLF1 (ENSCJPG00005012768) #7	KIAA0825 (ENSCJPG00005012769) #9	FAM172A (ENSCJPG00005000113) #10	NR2F1 (ENSCJPG00005000146) #12	ARRDC3 (ENSCJPG00005000230) #13	ADGRV1 (ENSCJPG00005000279) #15	LYSMD3 (ENSCJPG00005000389) #17	ENSCJPG00005000390	CETN3 (ENSCJPG00005000396) #20	MEF2C (ENSCJPG00005000422) #21	TMEM161B (ENSCJPG00005000442) #22	CCNH (ENSCJPG00005000482) #23	RASA1 (ENSCJPG00005000488) #24	COX7C (ENSCJPG00005000502) #25	ENSCJPG00005000513	ENSCJPG00005000521 #35	RPS23 (ENSCJPG00005000525) #36	EDIL3 (ENSCJPG00005000531) #28	HAPLN1 (ENSCJPG00005000544) #29	VCAN (ENSCJPG00005000555) #30	XRCC4 (ENSCJPG00005000577) #32	TMEM167A (ENSCJPG00005000681) #34	ATG10 (ENSCJPG00005000682) #37	SSBP2 (ENSCJPG00005000692)	ACOT12 (ENSCJPG00005000706)	ZCCHC9 (ENSCJPG00005000711)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT01070000254325.a.b.a	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102.k.a #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT01030000234916	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Turkey	MODERN SPECIES	1299	ARSK (ENSMGAG00000008104)	SKIC3 (ENSMGAG00000016805)	FAM81B (ENSMGAG00000017108)	MCTP1 (ENSMGAG00000020039)	ENSMGAG00000019169 #7	KIAA0825 (ENSMGAG00000008159) #9	FAM172A (ENSMGAG00000018212) #10	ENSMGAG00000021056 #15	ENSMGAG00000004687 #13	ENSMGAG00000022052 #15	LYSMD3 (ENSMGAG00000008206) #17	ENSMGAG00000008203	MBLAC2 (ENSMGAG00000020818) #19	CETN3 (ENSMGAG00000016928) #20	MEF2C (ENSMGAG00000021783) #21	TMEM161B (ENSMGAG00000008210) #22	CCNH (ENSMGAG00000008253) #23	RASA1 (ENSMGAG00000008292) #24	COX7C (ENSMGAG00000019652) #25	ENSMGAG00000008654	EDIL3 (ENSMGAG00000022807) #28	HAPLN1 (ENSMGAG00000020012) #29	ENSMGAG00000020049 #30	ENSMGAG00000020009 #30	ENSMGAG00000017132 #30	XRCC4 (ENSMGAG00000018677) #32	ENSMGAG00000003952 #35	RPS23 (ENSMGAG00000016932) #36	ENSMGAG00000020585	SSBP2 (ENSMGAG00000020044)	ACOT12 (ENSMGAG00000021238)
Chicken	MODERN SPECIES	131	TTC37 (ENSGALG00010013132)	FAM81B (ENSGALG00010013142)	MCTP1 (ENSGALG00010013149)	SLF1 (ENSGALG00010013327) #7	KIAA0825 (ENSGALG00010013410) #9	FAM172A (ENSGALG00010013497) #10	NR2F1 (ENSGALG00010013574) #12	ENSGALG00010014336	ARRDC3 (ENSGALG00010012830) #13	ADGRV1 (ENSGALG00010013001) #15	LYSMD3 (ENSGALG00010013085) #17	ENSGALG00010013097	MBLAC2 (ENSGALG00010012587) #19	CETN3 (ENSGALG00010013696) #20	MEF2C (ENSGALG00010007430) #21	TMEM161B (ENSGALG00010005477) #22	ENSGALG00010006074	ENSGALG00010006600	ENSGALG00010006034	ENSGALG00010005451	ENSGALG00010005976	ENSGALG00010006265	ENSGALG00010005947	ENSGALG00010006364	ENSGALG00010005908	ENSGALG00010006044	CCNH (ENSGALG00010005887) #23	ENSGALG00010005899 #24	COX7C (ENSGALG00010006252) #25	ENSGALG00010006257	ENSGALG00010005481
Anatidae	ANCESTRAL SPECIES	102								ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT01080000257332.A.b.a.a.a.a.a.b	ENSGT00390000000672.a.b #22	ENSGT00960000189906.A	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25
Pink-footed goose	MODERN SPECIES	400																TMEM161B (ENSABRG00000014614) #22	ENSABRG00000014630
Duck	MODERN SPECIES	4281	ARSK (ENSAPLG00000005029)	SKIC3 (ENSAPLG00000004474)	FAM81B (ENSAPLG00000004389)	ENSAPLG00000019072	SLF1 (ENSAPLG00000004056) #7	KIAA0825 (ENSAPLG00000003907) #9	FAM172A (ENSAPLG00000004055) #10	ARRDC3 (ENSAPLG00000013315) #13	ADGRV1 (ENSAPLG00000008200) #15	LYSMD3 (ENSAPLG00000001247) #17	ENSAPLG00000008192	MBLAC2 (ENSAPLG00000001245) #19	CETN3 (ENSAPLG00000008041) #20	MEF2C (ENSAPLG00000011196) #21	ENSAPLG00000027924	TMEM161B (ENSAPLG00000010679) #22	ENSAPLG00000030736	CCNH (ENSAPLG00000005729) #23	RASA1 (ENSAPLG00000005627) #24	COX7C (ENSAPLG00000024728) #25	FRMPD1 (ENSAPLG00000014290)	ENSAPLG00000014388	DCAF10 (ENSAPLG00000010217)	ENSAPLG00000018153	POLR1E (ENSAPLG00000010340)	ZBTB5 (ENSAPLG00000001994)	GRHPR (ENSAPLG00000010737)	ZCCHC7 (ENSAPLG00000010747)	PAX5 (ENSAPLG00000010841)	ENSAPLG00000018109	ENSAPLG00000015923
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a.f
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00550000074784.a.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C
Golden eagle	MODERN SPECIES	91	ENSACCG00020012542	MCTP1 (ENSACCG00020012665)	SLF1 (ENSACCG00020012849) #7	ENSACCG00020012899	ENSACCG00020012920	FAM172A (ENSACCG00020013051) #10	NR2F1 (ENSACCG00020013131) #12	ARRDC3 (ENSACCG00020013149) #13	ENSACCG00020013174 #15	ENSACCG00020013302 #15	LYSMD3 (ENSACCG00020013378) #17	ENSACCG00020013396	MBLAC2 (ENSACCG00020013405) #19	CETN3 (ENSACCG00020013416) #20	MEF2C (ENSACCG00020013466) #21	TMEM161B (ENSACCG00020013554) #22	CCNH (ENSACCG00020013615) #23	RASA1 (ENSACCG00020013845) #24	COX7C (ENSACCG00020013971) #25	EDIL3 (ENSACCG00020013998) #28	HAPLN1 (ENSACCG00020014033) #29	VCAN (ENSACCG00020014055) #30	XRCC4 (ENSACCG00020014071) #32	TMEM167A (ENSACCG00020014094) #34	ENSACCG00020014107 #35	ENSACCG00020014125	ENSACCG00020014140 ##36	ATG10 (ENSACCG00020014163) #37	SSBP2 (ENSACCG00020014198)	ACOT12 (ENSACCG00020014240)	ZCCHC9 (ENSACCG00020014264)
Kakapo	MODERN SPECIES	19	ARSK (ENSSHBG00005002992)	ENSSHBG00005003009	SKIC3 (ENSSHBG00005003073)	MCTP1 (ENSSHBG00005003181)	SLF1 (ENSSHBG00005003296) #7	KIAA0825 (ENSSHBG00005003330) #9	FAM172A (ENSSHBG00005003361) #10	NR2F1 (ENSSHBG00005003375) #12	ENSSHBG00005003420 #13	ADGRV1 (ENSSHBG00005003448) #15	LYSMD3 (ENSSHBG00005003517) #17	ENSSHBG00005003528	MBLAC2 (ENSSHBG00005003534) #19	CETN3 (ENSSHBG00005003545) #20	MEF2C (ENSSHBG00005003556) #21	TMEM161B (ENSSHBG00005003651) #22	CCNH (ENSSHBG00005003674) #23	ENSSHBG00005003804 #24	COX7C (ENSSHBG00005004373) #25	EDIL3 (ENSSHBG00005001414) #28	ENSSHBG00005001456	HAPLN1 (ENSSHBG00005001483) #29	VCAN (ENSSHBG00005001512) #30	XRCC4 (ENSSHBG00005001575) #32	ENSSHBG00005001705	ENSSHBG00005001734 #35	RPS23 (ENSSHBG00005001774) ##36	ENSSHBG00005001802	ATG10 (ENSSHBG00005001819) #37	SSBP2 (ENSSHBG00005001883)	ENSSHBG00005001901
Passeriformes	ANCESTRAL SPECIES	38	ENSGT00940000176108	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a	ENSGT00390000008634 #23	ENSGT00940000155846.q #24
Great tit	MODERN SPECIES	642	PCSK5 (ENSPMJG00000006728)	ENSPMJG00000006698	ARSK (ENSPMJG00000006690)	SKIC3 (ENSPMJG00000006653)	MCTP1 (ENSPMJG00000006635)	SLF1 (ENSPMJG00000006589) #7	KIAA0825 (ENSPMJG00000006574) #9	FAM172A (ENSPMJG00000006455) #10	NR2F1 (ENSPMJG00000006410) #12	ARRDC3 (ENSPMJG00000006288) #13	ADGRV1 (ENSPMJG00000006174) #15	LYSMD3 (ENSPMJG00000006172) #17	MBLAC2 (ENSPMJG00000006171) #19	CETN3 (ENSPMJG00000006170) #20	MEF2C (ENSPMJG00000006158) #21	TMEM161B (ENSPMJG00000006155) #22	ENSPMJG00000006146	ENSPMJG00000006136	ENSPMJG00000006135	GRIN3A (ENSPMJG00000006124)	ENSPMJG00000006122	ENSPMJG00000005778	ALDOB (ENSPMJG00000005774)	ENSPMJG00000005759	ENSPMJG00000005756	PLPPR1 (ENSPMJG00000005754)	ENSPMJG00000005743	KCNN2 (ENSPMJG00000005733)	TRIM36 (ENSPMJG00000005711)	PGGT1B (ENSPMJG00000005704)	CCDC112 (ENSPMJG00000005699)
Passeriformes_d	ANCESTRAL SPECIES	36	ENSGT00940000155770	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031.b	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a.b	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00950000183112.b.a.b	ENSGT00410000028909	ENSGT00940000156579.q.b
Flycatcher	MODERN SPECIES	273																TMEM161B (ENSFALG00000010453) #22	ENSFALG00000015176	ENSFALG00000024263	CCNH (ENSFALG00000010462) #23	RASA1 (ENSFALG00000010471) #24	ENSFALG00000026498	ENSFALG00000023270	ENSFALG00000010499	ENSFALG00000019907	ENSFALG00000014835
Passeriformes_g	ANCESTRAL SPECIES	40	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031.b	ENSGT00940000156031.a	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a.b	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00950000183112.b.a.b	ENSGT00410000028909	ENSGT00940000156579.q.b
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	308																ENSGFOG00000002180 #22	ENSGFOG00000002198	CCNH (ENSGFOG00000002206) #23	ENSGFOG00000002237 #24	RGMB (ENSGFOG00000002505)	ENSGFOG00000002512
Medium ground finch	MODERN SPECIES	567																ENSGFOG00000011852 #22
Passeroidea	ANCESTRAL SPECIES	39	ENSGT00940000155770	ENSGT00940000158982	ENSGT00390000016407	ENSGT00940000156031.b	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c.b #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT01080000257494.A.a.a.b	ENSGT00390000008634 #23	ENSGT00940000155846.q #24	ENSGT00950000183112.b.a.b	ENSGT00410000028909	ENSGT00940000156579.q.b
Zebra finch	MODERN SPECIES	104	KIAA0825 (ENSTGUG00000000720) #9	FAM172A (ENSTGUG00000000715) #10	ENSTGUG00000000674	NR2F1 (ENSTGUG00000027507) #12	ENSTGUG00000028273	ARRDC3 (ENSTGUG00000000705) #13	ADGRV1 (ENSTGUG00000000694) #15	LYSMD3 (ENSTGUG00000024098) #17	ENSTGUG00000024571	MBLAC2 (ENSTGUG00000021825) #19	CETN3 (ENSTGUG00000000683) #20	ENSTGUG00000027756	ENSTGUG00000025281	MEF2C (ENSTGUG00000023398) #21	ENSTGUG00000025596	TMEM161B (ENSTGUG00000000669) #22	ENSTGUG00000021942	ENSTGUG00000028249	ENSTGUG00000006415	PCSK1 (ENSTGUG00000006229)	ENSTGUG00000006246	CDC25B (ENSTGUG00000006284)	ENSTGUG00000006307	FKTN (ENSTGUG00000006322)	TAL2 (ENSTGUG00000028281)	TMEM38B (ENSTGUG00000027549)	ENSTGUG00000020764	ZNF462 (ENSTGUG00000006352)	RAD23B (ENSTGUG00000006372)	KLF4 (ENSTGUG00000006403)	ENSTGUG00000026787
Common canary	DUPLICATION
Common canary	MODERN SPECIES	35	OSTF1 (ENSSCAG00000007747)	PCSK5 (ENSSCAG00000007736)	ARSK (ENSSCAG00000007732)	SKIC3 (ENSSCAG00000007721)	MCTP1 (ENSSCAG00000007672)	SLF1 (ENSSCAG00000007650) #7	KIAA0825 (ENSSCAG00000007637) #9	FAM172A (ENSSCAG00000007618) #10	ENSSCAG00000007608	ENSSCAG00000007604 #13	ADGRV1 (ENSSCAG00000007465) #15	LYSMD3 (ENSSCAG00000007433) #17	MBLAC2 (ENSSCAG00000007428) #19	CETN3 (ENSSCAG00000007424) #20	MEF2C (ENSSCAG00000007403) #21	ENSSCAG00000007385 #22	ENSSCAG00000007378	CCNH (ENSSCAG00000007375) #23	ENSSCAG00000007291 #24	ENSSCAG00000007249	RGMB (ENSSCAG00000007246)	ENSSCAG00000006064	RIOK2 (ENSSCAG00000005807)	GRIN3A (ENSSCAG00000005801)	ENSSCAG00000005788
Common canary	MODERN SPECIES	233																ENSSCAG00000005562 #22
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.a.b #10	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT00550000074784.a.a #36	ENSGT01040000240833	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Chinese turtle	MODERN SPECIES	1794					ENSPSIG00000010144 #10	NR2F1 (ENSPSIG00000010198) #12	ENSPSIG00000010496	ENSPSIG00000001379	ARRDC3 (ENSPSIG00000010705) #13	ADGRV1 (ENSPSIG00000011289) #15	LYSMD3 (ENSPSIG00000011799) #17	ENSPSIG00000011836	MBLAC2 (ENSPSIG00000001395) #19	CETN3 (ENSPSIG00000011904) #20	MEF2C (ENSPSIG00000012244) #21	TMEM161B (ENSPSIG00000012940) #22	ENSPSIG00000001410	CCNH (ENSPSIG00000012982) #23	RASA1 (ENSPSIG00000013601) #24
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.a.b #10	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000240833	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT01040000240833.a	ENSGT00550000074784.a.a #36	ENSGT01040000240833.b	ENSGT00550000074784.b ##36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Abingdon island giant tortoise	MODERN SPECIES	1065															MEF2C (ENSCABG00000008160) #21	TMEM161B (ENSCABG00000008150) #22
Goode s thornscrub tortoise	MODERN SPECIES	20	FAM81B (ENSGEVG00005005706)	MCTP1 (ENSGEVG00005005848)	SLF1 (ENSGEVG00005006161) #7	ENSGEVG00005006196	ENSGEVG00005006220	FAM172A (ENSGEVG00005006265) #10	NR2F1 (ENSGEVG00005006372) #12	ARRDC3 (ENSGEVG00005006404) #13	ENSGEVG00005006434	ADGRV1 (ENSGEVG00005006505) #15	LYSMD3 (ENSGEVG00005006783) #17	ENSGEVG00005006802	MBLAC2 (ENSGEVG00005006820) #19	CETN3 (ENSGEVG00005006845) #20	MEF2C (ENSGEVG00005006877) #21	TMEM161B (ENSGEVG00005006912) #22	CCNH (ENSGEVG00005006937) #23	RASA1 (ENSGEVG00005007316) #24	COX7C (ENSGEVG00005009127) #25	EDIL3 (ENSGEVG00005009290) #28	HAPLN1 (ENSGEVG00005010002) #29	ENSGEVG00005010195 #30	ENSGEVG00005010286 #30	XRCC4 (ENSGEVG00005010349) #32	TMEM167A (ENSGEVG00005010408) #34	ENSGEVG00005010430 #35	ENSGEVG00005010461	RPS23 (ENSGEVG00005010591) #36	ENSGEVG00005010649 ##36	ENSGEVG00005010746	ATG10 (ENSGEVG00005010800) #37
Emydidae	ANCESTRAL SPECIES	7	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.a.b #10	ENSGT00530000063907.c.a.a #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880.gb #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000240833	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
painted turtle	MODERN SPECIES	695			ENSCPBG00000010531 #10	NR2F1 (ENSCPBG00000010532) #12	ARRDC3 (ENSCPBG00000010539) #13	ENSCPBG00000010545 #15	ENSCPBG00000010563 #15	ENSCPBG00000010580	ENSCPBG00000010585 #15	RHOA (ENSCPBG00000010596)	LYSMD3 (ENSCPBG00000010597) #17	ENSCPBG00000010601	MBLAC2 (ENSCPBG00000010603) #19	CETN3 (ENSCPBG00000010605) #20	MEF2C (ENSCPBG00000010619) #21	TMEM161B (ENSCPBG00000010638) #22	CCNH (ENSCPBG00000010650) #23	RASA1 (ENSCPBG00000010658) #24	ENSCPBG00000010666	COX7C (ENSCPBG00000010669) #25	ENSCPBG00000010674	EDIL3 (ENSCPBG00000010684) #28	HAPLN1 (ENSCPBG00000010699) #29	VCAN (ENSCPBG00000010709) #30	XRCC4 (ENSCPBG00000010726) #32	TMEM167A (ENSCPBG00000010731) #34	ENSCPBG00000010740 #35	ENSCPBG00000010746 ##36	ENSCPBG00000010748	RPS23 (ENSCPBG00000010751) #36	ENSCPBG00000010753
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2240																ENSTMTG00000023101 #22
Three-toed box turtle	MODERN SPECIES	29	ENSTMTG00000013783	MCTP1 (ENSTMTG00000013441)	ENSTMTG00000013389 #7	ENSTMTG00000013375 #7	KIAA0825 (ENSTMTG00000013360) #9	FAM172A (ENSTMTG00000013334) #10	NR2F1 (ENSTMTG00000013324) #12	ARRDC3 (ENSTMTG00000013310) #13	ENSTMTG00000013290 #15	ENSTMTG00000013154 #15	LYSMD3 (ENSTMTG00000013133) #17	ENSTMTG00000013128	MBLAC2 (ENSTMTG00000013121) #19	CETN3 (ENSTMTG00000013112) #20	MEF2C (ENSTMTG00000013068) #21	ENSTMTG00000013044 #22	CCNH (ENSTMTG00000013023) #23	RASA1 (ENSTMTG00000012988) #24	COX7C (ENSTMTG00000012967) #25	EDIL3 (ENSTMTG00000012653) #28	HAPLN1 (ENSTMTG00000012604) #29	ENSTMTG00000012578 #30	ENSTMTG00000012555 #30	XRCC4 (ENSTMTG00000012541) #32	TMEM167A (ENSTMTG00000012521) #34	ENSTMTG00000012494	ENSTMTG00000012480 #35	ENSTMTG00000012462 #36	ATG10 (ENSTMTG00000012339) #37	SSBP2 (ENSTMTG00000012293)	ENSTMTG00000012276
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000154136	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000241481	ENSGT00550000074784.a.a #36	ENSGT01040000240833	ENSGT00390000000924 #37
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000241481	ENSGT00550000074784.a.a #36	ENSGT01040000240833	ENSGT00390000000924 #37	ENSGT00950000183049.A
Laterata	ANCESTRAL SPECIES	8	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00940000165033	ENSGT00940000165983	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01030000235264	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00950000183041.C	ENSGT00950000182772.B.a.a	ENSGT00940000155679
Common wall lizard	MODERN SPECIES	2	MCTP1 (ENSPMRG00000013144)	ENSPMRG00000013110 #7	ENSPMRG00000013080 #7	KIAA0825 (ENSPMRG00000013013) #9	FAM172A (ENSPMRG00000012980) #10	NR2F1 (ENSPMRG00000012967) #12	ARRDC3 (ENSPMRG00000012951) #13	ADGRV1 (ENSPMRG00000012759) #15	LYSMD3 (ENSPMRG00000012703) #17	ENSPMRG00000012701	MBLAC2 (ENSPMRG00000012699) #19	CETN3 (ENSPMRG00000012695) #20	ENSPMRG00000012694	MEF2C (ENSPMRG00000012686) #21	ENSPMRG00000012673	TMEM161B (ENSPMRG00000012659) #22	CCNH (ENSPMRG00000012638) #23	RASA1 (ENSPMRG00000012629) #24	COX7C (ENSPMRG00000012625) #25	EDIL3 (ENSPMRG00000012616) #28	HAPLN1 (ENSPMRG00000012609) #29	ENSPMRG00000012606	ENSPMRG00000012576 #30	ENSPMRG00000012564 #30	XRCC4 (ENSPMRG00000012553) #32	TMEM167A (ENSPMRG00000012546) #34	ENSPMRG00000012542 #35	ENSPMRG00000012537	ENSPMRG00000012535 ##36	RPS23 (ENSPMRG00000012532) #36	ENSPMRG00000012529
Argentine black and white tegu	MODERN SPECIES	10	FAM81B (ENSSMRG00000007900)	MCTP1 (ENSSMRG00000007859)	SLF1 (ENSSMRG00000007740) #7	ENSSMRG00000007737	ENSSMRG00000007735	FAM172A (ENSSMRG00000007712) #10	NR2F1 (ENSSMRG00000007704) #12	CETN3 (ENSSMRG00000007661) #20	ARRDC3 (ENSSMRG00000007657) #13	ADGRV1 (ENSSMRG00000007551) #15	LYSMD3 (ENSSMRG00000007513) #17	ENSSMRG00000007509	MBLAC2 (ENSSMRG00000007505) #19	ENSSMRG00000007503	MEF2C (ENSSMRG00000007471) #21	TMEM161B (ENSSMRG00000007438) #22	ENSSMRG00000007433	CCNH (ENSSMRG00000007424) #23	RASA1 (ENSSMRG00000007402) #24	COX7C (ENSSMRG00000007352) #25	EDIL3 (ENSSMRG00000007329) #28	ENSSMRG00000007280	HAPLN1 (ENSSMRG00000007276) #29	VCAN (ENSSMRG00000006719) #30	XRCC4 (ENSSMRG00000006677) #32	TMEM167A (ENSSMRG00000006663) #34	ENSSMRG00000006636 #35	ENSSMRG00000006627	ENSSMRG00000006633	RPS23 (ENSSMRG00000006623) #36	ATG10 (ENSSMRG00000006616) #37
Toxicofera	ANCESTRAL SPECIES	6	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT01030000235102	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b ##36	ENSGT01040000240833	ENSGT00550000074784.a.a #36	ENSGT00390000000924 #37	ENSGT00950000183049.A
Elapidae	ANCESTRAL SPECIES	7	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953.g #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT01030000235102	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b.b ##36	ENSGT00550000074784.b.a.a ##36	ENSGT01040000240833	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	1	SKIC3 (ENSNNAG00000000720)	ENSNNAG00000000778	MCTP1 (ENSNNAG00000000798)	ENSNNAG00000000933 #7	ENSNNAG00000000954 #7	KIAA0825 (ENSNNAG00000000974) #9	FAM172A (ENSNNAG00000001060) #10	NR2F1 (ENSNNAG00000001101) #12	ARRDC3 (ENSNNAG00000001125) #13	ADGRV1 (ENSNNAG00000001181) #15	LYSMD3 (ENSNNAG00000001322) #17	MBLAC2 (ENSNNAG00000001338) #19	CETN3 (ENSNNAG00000001354) #20	MEF2C (ENSNNAG00000001372) #21	ENSNNAG00000001402 #22	ENSNNAG00000001415 #22	CCNH (ENSNNAG00000001430) #23	RASA1 (ENSNNAG00000001568) #24	ENSNNAG00000002013	EDIL3 (ENSNNAG00000002046) #28	HAPLN1 (ENSNNAG00000002181) #29	ENSNNAG00000002196 #30	XRCC4 (ENSNNAG00000002227) #32	TMEM167A (ENSNNAG00000002280) #34	ENSNNAG00000002286	ENSNNAG00000002292 #35	ENSNNAG00000002308	ENSNNAG00000002327 ##36	ENSNNAG00000002336 ##36	ATG10 (ENSNNAG00000002344) #37	SSBP2 (ENSNNAG00000002360)
Indian cobra	MODERN SPECIES	1	ARSK (ENSNNAG00000000660)	SKIC3 (ENSNNAG00000000720)	ENSNNAG00000000778	MCTP1 (ENSNNAG00000000798)	ENSNNAG00000000933 #7	ENSNNAG00000000954 #7	KIAA0825 (ENSNNAG00000000974) #9	FAM172A (ENSNNAG00000001060) #10	NR2F1 (ENSNNAG00000001101) #12	ARRDC3 (ENSNNAG00000001125) #13	ADGRV1 (ENSNNAG00000001181) #15	LYSMD3 (ENSNNAG00000001322) #17	MBLAC2 (ENSNNAG00000001338) #19	CETN3 (ENSNNAG00000001354) #20	MEF2C (ENSNNAG00000001372) #21	ENSNNAG00000001402 #22	ENSNNAG00000001415 #22	CCNH (ENSNNAG00000001430) #23	RASA1 (ENSNNAG00000001568) #24	ENSNNAG00000002013	EDIL3 (ENSNNAG00000002046) #28	HAPLN1 (ENSNNAG00000002181) #29	ENSNNAG00000002196 #30	XRCC4 (ENSNNAG00000002227) #32	TMEM167A (ENSNNAG00000002280) #34	ENSNNAG00000002286	ENSNNAG00000002292 #35	ENSNNAG00000002308	ENSNNAG00000002327 ##36	ENSNNAG00000002336 ##36	ATG10 (ENSNNAG00000002344) #37
Elapidae_a	ANCESTRAL SPECIES	9	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953.g #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT01030000235102	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b.b ##36	ENSGT00550000074784.b.a.a ##36	ENSGT01040000240833.e	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953.g #7	ENSGT00610000086112 #9	ENSGT00530000063907.c.b #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT01030000235102	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT00550000074784.b.b ##36	ENSGT00550000074784.b.a.a ##36	ENSGT01040000240833.e	ENSGT00390000000924 #37	ENSGT00950000183049.A	ENSGT00940000160328
Eastern brown snake	MODERN SPECIES	2	FAM81B (ENSPTXG00000005139)	MCTP1 (ENSPTXG00000005122)	ENSPTXG00000005121 #7	ENSPTXG00000005120 #7	KIAA0825 (ENSPTXG00000005117) #9	FAM172A (ENSPTXG00000005114) #10	NR2F1 (ENSPTXG00000005112) #12	ENSPTXG00000005110	ARRDC3 (ENSPTXG00000005107) #13	ENSPTXG00000005106 #15	ENSPTXG00000005103 #15	LYSMD3 (ENSPTXG00000005102) #17	MBLAC2 (ENSPTXG00000005101) #19	CETN3 (ENSPTXG00000005100) #20	MEF2C (ENSPTXG00000005099) #21	TMEM161B (ENSPTXG00000005097) #22	CCNH (ENSPTXG00000005096) #23	RASA1 (ENSPTXG00000005095) #24	ENSPTXG00000005093	EDIL3 (ENSPTXG00000004710) #28	HAPLN1 (ENSPTXG00000004709) #29	ENSPTXG00000004708 #30	XRCC4 (ENSPTXG00000004688) #32	TMEM167A (ENSPTXG00000004687) #34	ENSPTXG00000004686	ENSPTXG00000004685 #35	ENSPTXG00000004684	ENSPTXG00000004683 ##36	ENSPTXG00000004682 ##36	ENSPTXG00000004681	ATG10 (ENSPTXG00000004680) #37
Mainland tiger snake	MODERN SPECIES	1	SKIC3 (ENSNSUG00000006204)	FAM81B (ENSNSUG00000006197)	MCTP1 (ENSNSUG00000006182)	ENSNSUG00000006180 #7	ENSNSUG00000006178 #7	KIAA0825 (ENSNSUG00000006158) #9	FAM172A (ENSNSUG00000006156) #10	NR2F1 (ENSNSUG00000006155) #12	ARRDC3 (ENSNSUG00000006123) #13	ENSNSUG00000006121 #15	ENSNSUG00000006114 #15	LYSMD3 (ENSNSUG00000006111) #17	MBLAC2 (ENSNSUG00000006110) #19	CETN3 (ENSNSUG00000006108) #20	MEF2C (ENSNSUG00000005871) #21	TMEM161B (ENSNSUG00000005819) #22	CCNH (ENSNSUG00000005790) #23	RASA1 (ENSNSUG00000004867) #24	ENSNSUG00000004862	ENSNSUG00000004860	EDIL3 (ENSNSUG00000004852) #28	HAPLN1 (ENSNSUG00000004848) #29	ENSNSUG00000004844 #30	XRCC4 (ENSNSUG00000004725) #32	TMEM167A (ENSNSUG00000004709) #34	ENSNSUG00000004706 #35	ENSNSUG00000004701 ##36	ENSNSUG00000004696	ATG10 (ENSNSUG00000004695) #37	SSBP2 (ENSNSUG00000004681)	ENSNSUG00000004679
Blue-lipped sea krait	MODERN SPECIES	6147																TMEM161B (ENSLLTG00000003270) #22
Lizard	MODERN SPECIES	1	KIAA0825 (ENSACAG00000013284) #9	ENSACAG00000036248	ENSACAG00000039274	FAM172A (ENSACAG00000013305) #10	ENSACAG00000042609	ENSACAG00000041925	ENSACAG00000036598	NR2F1 (ENSACAG00000013324) #12	ARRDC3 (ENSACAG00000013384) #13	ADGRV1 (ENSACAG00000013431) #15	LYSMD3 (ENSACAG00000035122) #17	MBLAC2 (ENSACAG00000013646) #19	ENSACAG00000038915	ENSACAG00000041753	MEF2C (ENSACAG00000000488) #21	TMEM161B (ENSACAG00000000583) #22	ENSACAG00000044209	CCNH (ENSACAG00000000627) #23	RASA1 (ENSACAG00000000769) #24	COX7C (ENSACAG00000001016) #25	ENSACAG00000009101	ENSACAG00000038280	EDIL3 (ENSACAG00000011454) #28	HAPLN1 (ENSACAG00000011432) #29	ENSACAG00000037910	VCAN (ENSACAG00000011195) #30	ENSACAG00000037657	XRCC4 (ENSACAG00000011160) #32	TMEM167A (ENSACAG00000011153) #34	ENSACAG00000037915 #35	ENSACAG00000011136
tuatara	MODERN SPECIES	1826															MEF2C (ENSSPUG00000007634) #21	TMEM161B (ENSSPUG00000008032) #22	CCNH (ENSSPUG00000008064) #23	RASA1 (ENSSPUG00000008166) #24
Anura	ANCESTRAL SPECIES	9	ENSGT00940000158982	ENSGT00390000016407	ENSGT00390000004985.a	ENSGT00940000156031	ENSGT00940000158953 #7	ENSGT00610000086112 #9	ENSGT00530000063907.c #10	ENSGT00940000157876 #12	ENSGT00940000155411.c #13	ENSGT00940000154880 #15	ENSGT00940000158711 #17	ENSGT01090000262566	ENSGT00390000017819 #19	ENSGT00940000157995 #20	ENSGT00940000157492.b #21	ENSGT00390000000672.a.b #22	ENSGT00390000008634 #23	ENSGT00940000155846 #24	ENSGT00390000018086 #25	ENSGT00940000158144 #28	ENSGT00940000159267 #29	ENSGT00940000156102 #30	ENSGT00390000017079 #32	ENSGT00940000155186 #34	ENSGT00940000158156 #35	ENSGT01090000262138	ENSGT00550000074784.b ##36	ENSGT00950000183049.A	ENSGT00940000160328	ENSGT00940000155679	ENSGT00550000074949
Frog	MODERN SPECIES		mctp1 (ENSXETG00000013380)	ENSXETG00000042832	slf1 (ENSXETG00000013387) #7	kiaa0825 (ENSXETG00000013392) #9	fam172a (ENSXETG00000011592) #10	ENSXETG00000049303	nr2f1 (ENSXETG00000011594) #12	arrdc3 (ENSXETG00000018085) #13	adgrv1 (ENSXETG00000019628) #15	lysmd3 (ENSXETG00000019627) #17	polr3g (ENSXETG00000037832)	ENSXETG00000047093	cetn3 (ENSXETG00000039666) #19	mef2c (ENSXETG00000007038) #21	ENSXETG00000042997	tmem161b (ENSXETG00000011719) #22	ccnh (ENSXETG00000011718) #23	rasa1 (ENSXETG00000011717) #24	ENSXETG00000040223	ENSXETG00000049068	cox7c (ENSXETG00000025081) #25	ENSXETG00000035340	edil3 (ENSXETG00000019793) #28	hapln1 (ENSXETG00000019797) #29	vcan (ENSXETG00000027815) #30	xrcc4 (ENSXETG00000027814) #32	tmem167a (ENSXETG00000027813) #34	ENSXETG00000039925	atp6ap1l (ENSXETG00000030377) #35	rps23 (ENSXETG00000027811) ##36	ENSXETG00000039289
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000003037	FAM172A (ENSLLEG00000002992) #10	NR2F1 (ENSLLEG00000002960) #12	ENSLLEG00000002913	ENSLLEG00000002903	ENSLLEG00000002897	ENSLLEG00000002894 #13	ADGRV1 (ENSLLEG00000002700) #15	LYSMD3 (ENSLLEG00000002640) #17	ENSLLEG00000002604	MBLAC2 (ENSLLEG00000002593) #19	CETN3 (ENSLLEG00000002555) #20	ENSLLEG00000002534	MEF2C (ENSLLEG00000002434) #21	ENSLLEG00000002375	TMEM161B (ENSLLEG00000002331) #22	ENSLLEG00000002303	CCNH (ENSLLEG00000002231) #23	RASA1 (ENSLLEG00000002067) #24	ENSLLEG00000002025	ENSLLEG00000002019	COX7C (ENSLLEG00000001998) #25	ENSLLEG00000001989	ENSLLEG00000001981	EDIL3 (ENSLLEG00000001894) #28	ENSLLEG00000001869	HAPLN1 (ENSLLEG00000001856) #29	ENSLLEG00000001847	ENSLLEG00000001829 #30	ENSLLEG00000001820	ENSLLEG00000001812